If more than 50 genes/sequences are provided as input, then the associated running time can take some time. Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes. After processing you will be send an email with a link to the created phylogenetic tree.
The selection modi are exclusive: please choose either Gene selection or Species selection.
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000911', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27780' => 'bna', 'A03p35380' => 'bna', 'A04p21160' => 'bna', 'A05p40570' => 'bna', 'A06p26900' => 'bna', 'A08p33230' => 'bna', 'A09p65960' => 'bna', 'A10p18290' => 'bna', 'Aa31LG1G12990' => 'aar', 'Aa31LG1G2980' => 'aar', 'Aa31LG4G14320' => 'aar', 'Aa31LG7G11800' => 'aar', 'Aa31sc36G50' => 'aar', 'Aa31sc36G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3721' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5459' => 'aag', 'Actinidia03028' => 'ach', 'Actinidia03753' => 'ach', 'Actinidia04187' => 'ach', 'Actinidia05509' => 'ach', 'Actinidia24180' => 'ach', 'Actinidia26906' => 'ach', 'Actinidia37097' => 'ach', 'Actinidia38249' => 'ach', 'Ah.01g003470' => 'amhyb', 'Ah.01g004580' => 'amhyb', 'Ah.01g014850' => 'amhyb', 'Ah.01g016830' => 'amhyb', 'Ah.14g088000' => 'amhyb', 'AL1G22980' => 'aly', 'AL3G18990' => 'aly', 'AL4G22440' => 'aly', 'AL4G33180' => 'aly', 'AL5G22920' => 'aly', 'AL6G33660' => 'aly', 'AL8G20720' => 'aly', 'Aqoxy1G00935' => 'aox', 'Aqoxy1G02094' => 'aox', 'Aqoxy2G01239' => 'aox', 'Aqoxy4G01870' => 'aox', 'Aqoxy7G00450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.36ZVTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71EM27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5D6C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH3WRE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3NCM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RIM768' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YB5YRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z36GDV' => 'arhy', 'AT1G08250' => 'ath', 'AT1G11790' => 'ath', 'AT2G27820' => 'ath', 'AT3G07630' => 'ath', 'AT3G44720' => 'ath', 'AT5G22630' => 'ath', 'ATR0693G304' => 'atr', 'ATR0794G109' => 'atr', 'ATR0820G120' => 'atr', 'ATR1159G064' => 'atr', 'Atru.chr10.2239' => 'acertr', 'Atru.chr3.3371' => 'acertr', 'Atru.chr6.3202' => 'acertr', 'AUR62006499' => 'cqu', 'AUR62012718' => 'cqu', 'AUR62021938' => 'cqu', 'AUR62023932' => 'cqu', 'AUR62025034' => 'cqu', 'AUR62025035' => 'cqu', 'AUR62038307' => 'cqu', 'AUR62043466' => 'cqu', 'BcaB02g10748' => 'bca', 'BcaB03g13231' => 'bca', 'BcaB03g14689' => 'bca', 'BcaB05g22716' => 'bca', 'BcaB06g28172' => 'bca', 'BcaB08g36413' => 'bca', 'BcaC01g02186' => 'bca', 'BcaC01g04272' => 'bca', 'BcaC02g08080' => 'bca', 'BcaC02g08227' => 'bca', 'BcaC03g13901' => 'bca', 'BcaC04g19593' => 'bca', 'BcaC04g20874' => 'bca', 'BcaC05g29557' => 'bca', 'BcaC06g35505' => 'bca', 'BcaC07g41954' => 'bca', 'BcaC07g41955' => 'bca', 'BcaC07g41956' => 'bca', 'BcaC07g42519' => 'bca', 'BcaC07g42520' => 'bca', 'BcaC07g42523' => 'bca', 'BcaC07g42524' => 'bca', 'BcaC07g42525' => 'bca', 'BcaC08g47480' => 'bca', 'BcaC08g47481' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00530' => 'bna', 'BolC2t07178H' => 'bol', 'BolC3t16567H' => 'bol', 'BolC4t27234H' => 'bol', 'BolC5t29728H' => 'bol', 'BolC5t34622H' => 'bol', 'BolC6t40321H' => 'bol', 'BolC7t42028H' => 'bol', 'BolC8t49125H' => 'bol', 'BolC8t52538H' => 'bol', 'BolC8t52539H' => 'bol', 'BolC9t56681H' => 'bol', 'BolC9t58266H' => 'bol', 'BolSC21t60294H' => 'bol', 'BraA02t05670Z' => 'bra', 'BraA03t12716Z' => 'bra', 'BraA04t17685Z' => 'bra', 'BraA05t22788Z' => 'bra', 'BraA06t24032Z' => 'bra', 'BraA06t25625Z' => 'bra', 'BraA07t27930Z' => 'bra', 'BraA08t35242Z' => 'bra', 'BraA09t38609Z' => 'bra', 'BraA10t43905Z' => 'bra', 'C02p11060' => 'bna', 'C03p42990' => 'bna', 'C03p67310' => 'bna', 'C04p56990' => 'bna', 'C04p58660' => 'bna', 'C05p09890' => 'bna', 'C05p59680' => 'bna', 'C06p19830' => 'bna', 'C06p53040' => 'bna', 'C07p15230' => 'bna', 'C08p50070' => 'bna', 'C08p50090' => 'bna', 'C09p38330' => 'bna', 'C09p53940' => 'bna', 'CAN.G1014.1' => 'can', 'CAN.G644.30' => 'can', 'CAN.G84.47' => 'can', 'CAN.G919.8' => 'can', 'CANSAT54G0113' => 'cansat', 'CANSAT54G1286' => 'cansat', 'CANSAT64G1020' => 'cansat', 'CARHR008080' => 'chi', 'CARHR008090' => 'chi', 'CARHR012130' => 'chi', 'CARHR038390' => 'chi', 'CARHR082330' => 'chi', 'CARHR120520' => 'chi', 'CARHR151470' => 'chi', 'CARHR190950' => 'chi', 'Carub.0001s0760' => 'cru', 'Carub.0001s1146' => 'cru', 'Carub.0003s0721' => 'cru', 'Carub.0004s0858' => 'cru', 'Carub.0005s1040' => 'cru', 'Carub.0006s2035' => 'cru', 'Carub.0015s0005' => 'cru', 'Ca_01607_v3' => 'car', 'Ca_01677_v3' => 'car', 'Ca_06087_v3' => 'car', 'Ca_19238_v3' => 'car', 'Ca_19373_v3' => 'car', 'Ca_21079_v3' => 'car', 'CBR_g54016' => 'cbr', 'CBR_g54018' => 'cbr', 'CBR_g54020' => 'cbr', 'Cc01_g09780' => 'ccan', 'Cc01_g11680' => 'ccan', 'Cc02_g15610' => 'ccan', 'Cc05_g04350' => 'ccan', 'Cc09_g01580' => 'ccan', 'CDE01G0795' => 'cde', 'CDE02G2024' => 'cde', 'CDE02G2260' => 'cde', 'CDE02G4561' => 'cde', 'CDE05G2733' => 'cde', 'CDE05G3422' => 'cde', 'CDE06G2003' => 'cde', 'CDE08G0576' => 'cde', 'CDE09G0048' => 'cde', 'CDE11G0805' => 'cde', 'Cfa003644' => 'cfa', 'Cfa006290' => 'cfa', 'Cfa010080' => 'cfa', 'Cfa011376' => 'cfa', 'Cfa011576' => 'cfa', 'Cfa011577' => 'cfa', 'Cfa014389' => 'cfa', 'Ciclev10006044m.g' => 'ccl', 'Ciclev10006954m.g' => 'ccl', 'Ciclev10015131m.g' => 'ccl', 'Ciclev10015580m.g' => 'ccl', 'Ciclev10028359m.g' => 'ccl', 'Ciclev10028573m.g' => 'ccl', 'CiPaw.03G159300' => 'cil', 'CiPaw.04G115100' => 'cil', 'CiPaw.09G092800' => 'cil', 'CiPaw.10G071800' => 'cil', 'CiPaw.13G105800' => 'cil', 'CiPaw.13G141000' => 'cil', 'CiPaw.14G103400' => 'cil', 'ClCG01G012700' => 'cla', 'ClCG01G012720' => 'cla', 'ClCG01G021920' => 'cla', 'ClCG02G008870' => 'cla', 'ClCG02G020840' => 'cla', 'ClCG02G021930' => 'cla', 'COL.COLO4_19302' => 'col', 'COL.COLO4_25262' => 'col', 'COL.COLO4_31788' => 'col', 'Cpa.g.c34684' => 'cpa', 'Cpa.g.c36520.1' => 'cpa', 'Cpa.g.c45626' => 'cpa', 'Cpa.g.sc121.17' => 'cpa', 'Cpa.g.sc13.22' => 'cpa', 'Cpa.g.sc87.88' => 'cpa', 'Cre06.g261800' => 'cre', 'CsaV3_1G014500' => 'csa', 'CsaV3_1G014510' => 'csa', 'CsaV3_2G034880' => 'csa', 'CsaV3_6G014760' => 'csa', 'CsaV3_6G021500' => 'csa', 'CsaV3_6G048980' => 'csa', 'CSS0002511' => 'camsi', 'CSS0007556' => 'camsi', 'CSS0008532' => 'camsi', 'CSS0009709' => 'camsi', 'CSS0010486' => 'camsi', 'CSS0016768' => 'camsi', 'CSS0023512' => 'camsi', 'CSS0025341' => 'camsi', 'CSS0027999' => 'camsi', 'CSS0028944' => 'camsi', 'CSS0032292' => 'camsi', 'CSS0032464' => 'camsi', 'CSS0037153' => 'camsi', 'CSS0039256' => 'camsi', 'CSS0048392' => 'camsi', 'CSS0050458' => 'camsi', 'DCAR_004224' => 'dca', 'DCAR_006147' => 'dca', 'DCAR_006465' => 'dca', 'DCAR_008159' => 'dca', 'DCAR_012164' => 'dca', 'DCAR_019764' => 'dca', 'Dinv05418' => 'din', 'Dinv10839' => 'din', 'Dinv12521' => 'din', 'Dinv13900' => 'din', 'Dinv29426' => 'din', 'Duzib150G0263' => 'dzi', 'Duzib168G1178' => 'dzi', 'Duzib168G1924' => 'dzi', 'Duzib170G0299' => 'dzi', 'Duzib170G0813' => 'dzi', 'Duzib235G1128' => 'dzi', 'Duzib248G1060' => 'dzi', 'ECA232G1910' => 'eca', 'ECA233G4621' => 'eca', 'ECA238G1216' => 'eca', 'ECA238G1784' => 'eca', 'ECA248G1242' => 'eca', 'EL10Ac8g20071' => 'bvu', 'EL10Ac9g21086' => 'bvu', 'EL10Ac9g22407' => 'bvu', 'EL10Ac9g22412' => 'bvu', 'Eucgr.A01119' => 'egr', 'Eucgr.E04043' => 'egr', 'Eucgr.J00428' => 'egr', 'Eucgr.J00958' => 'egr', 'FAN11G3091' => 'fan', 'FAN11G3651' => 'fan', 'FAN16G2566' => 'fan', 'FAN21G3155' => 'fan', 'FAN21G3400' => 'fan', 'FAN21G3543' => 'fan', 'FAN25G0234' => 'fan', 'FAN25G1422' => 'fan', 'FAN25G3392' => 'fan', 'FvH4_3g01940' => 'fve', 'FvH4_3g29870' => 'fve', 'FvH4_3g33680' => 'fve', 'Glyma.09G004200' => 'gma', 'Glyma.11G151288' => 'gma', 'Glyma.11G189100' => 'gma', 'Glyma.12G072500' => 'gma', 'Glyma.12G085500' => 'gma', 'Glyma.12G181800' => 'gma', 'Glyma.12G193000' => 'gma', 'Glyma.13G309300' => 'gma', 'Glyma.13G319000' => 'gma', 'Glyma.17G012600' => 'gma', 'Gohir.A06G148600' => 'ghi', 'Gohir.A07G115800' => 'ghi', 'Gohir.A08G003600' => 'ghi', 'Gohir.A09G093300' => 'ghi', 'Gohir.A09G105400' => 'ghi', 'Gohir.A09G105500' => 'ghi', 'Gohir.D06G154600' => 'ghi', 'Gohir.D07G120200' => 'ghi', 'Gohir.D08G013900' => 'ghi', 'Gohir.D09G093100' => 'ghi', 'Gohir.D09G102200' => 'ghi', 'Gohir.D09G102300' => 'ghi', 'Gorai.001G129400' => 'gra', 'Gorai.004G008200' => 'gra', 'Gorai.006G109800' => 'gra', 'Gorai.006G119500' => 'gra', 'Gorai.006G121300' => 'gra', 'Gorai.010G180700' => 'gra', 'GSVIVG01012716001' => 'vvi', 'GSVIVG01025118001' => 'vvi', 'GSVIVG01030439001' => 'vvi', 'GSVIVG01031397001' => 'vvi', 'HanXRQChr01g0004201' => 'han', 'HanXRQChr02g0054941' => 'han', 'HanXRQChr05g0141811' => 'han', 'HanXRQChr07g0197751' => 'han', 'HanXRQChr11g0346691' => 'han', 'HanXRQChr13g0396971' => 'han', 'HanXRQChr14g0432951' => 'han', 'HanXRQChr14g0452001' => 'han', 'HanXRQChr15g0496681' => 'han', 'HanXRQChr17g0557491' => 'han', 'HanXRQChr17g0557501' => 'han', 'Haze_06809' => 'cav', 'Haze_12852' => 'cav', 'Haze_15850' => 'cav', 'Haze_23446' => 'cav', 'Haze_23942' => 'cav', 'Haze_23943' => 'cav', 'Hma1.2p1_0091F.1_g046450' => 'hma', 'Hma1.2p1_0128F.1_g059910' => 'hma', 'Hma1.2p1_0249F.1_g102260' => 'hma', 'Hma1.2p1_0453F.1_g156190' => 'hma', 'Hma1.2p1_0695F.1_g204380' => 'hma', 'Hma1.2p1_0749F.1_g212650' => 'hma', 'Hma1.2p1_2156F.1_g315420' => 'hma', 'Hma1.2p1_2686F.1_g326940' => 'hma', 'HPP92_006428' => 'vpl', 'HPP92_012069' => 'vpl', 'HPP92_014129' => 'vpl', 'HPP92_014133' => 'vpl', 'HPP92_017315' => 'vpl', 'HPP92_026445' => 'vpl', 'HPP92_026446' => 'vpl', 'Hund00774' => 'sun', 'Hund07682' => 'sun', 'Hund21413' => 'sun', 'Hund23462' => 'sun', 'Hund23463' => 'sun', 'Lalb_Chr03g0027911' => 'lal', 'Lalb_Chr13g0304271' => 'lal', 'Lalb_Chr19g0137471' => 'lal', 'Lalb_Chr22g0350651' => 'lal', 'Lalb_Chr24g0395151' => 'lal', 'Lj1A1231T40' => 'lonja', 'Lj1A221T48' => 'lonja', 'Lj1C924T12' => 'lonja', 'Lj2C993G6' => 'lonja', 'Lj3g0005790' => 'lja', 'Lj3g0015432' => 'lja', 'Lj3g0017722' => 'lja', 'Lj3g0018497' => 'lja', 'Lj4g0025071' => 'lja', 'Lsat_1_v5_gn_1_129680' => 'lsa', 'Lsat_1_v5_gn_2_25321' => 'lsa', 'Lsat_1_v5_gn_2_95461' => 'lsa', 'Lsat_1_v5_gn_4_159620' => 'lsa', 'Lsat_1_v5_gn_6_41301' => 'lsa', 'Lsat_1_v5_gn_6_74660' => 'lsa', 'Lsat_1_v5_gn_7_11520' => 'lsa', 'Lsat_1_v5_gn_9_67680' => 'lsa', 'Manes.04G008300' => 'mes', 'Manes.04G008400' => 'mes', 'Manes.04G026500' => 'mes', 'Manes.10G135300' => 'mes', 'Manes.11G157300' => 'mes', 'Manes.12G074000' => 'mes', 'Manes.16G006200' => 'mes', 'Manes.17G026400' => 'mes', 'Mapoly0024s0086' => 'mpo', 'Mapoly0024s0087' => 'mpo', 'Mapoly0071s0057' => 'mpo', 'Mapoly0204s0012' => 'mpo', 'MBI04_g37681_MAGBIO' => 'mbi', 'MBI05_g17779_MAGBIO' => 'mbi', 'MBI12_g31184_MAGBIO' => 'mbi', 'MBI17_g11083_MAGBIO' => 'mbi', 'MBI18_g03883_MAGBIO' => 'mbi', 'MBI18_g28940_MAGBIO' => 'mbi', 'MCO01G690' => 'mco', 'MD03G1109900' => 'mdo', 'MD03G1134800' => 'mdo', 'MD05G1348000' => 'mdo', 'MD10G1322400' => 'mdo', 'MD11G1123300' => 'mdo', 'MD11G1157600' => 'mdo', 'Medtr2g084875' => 'mtr', 'Medtr2g088130' => 'mtr', 'Medtr4g055310' => 'mtr', 'Medtr4g061070' => 'mtr', 'Medtr4g132250' => 'mtr', 'MELO3C004795.2' => 'cme', 'MELO3C004797.2' => 'cme', 'MELO3C007396.2' => 'cme', 'MELO3C019277.2' => 'cme', 'MELO3C021449.2' => 'cme', 'MELO3C025736.2' => 'cme', 'Migut.D02175' => 'egut', 'Migut.H01573' => 'egut', 'Migut.M01327' => 'egut', 'Migut.N02513' => 'egut', 'MSTRG.14638' => 'ama', 'MSTRG.18632' => 'ama', 'MSTRG.7203' => 'ama', 'Nitab4.5_0000533g0140' => 'nta', 'Nitab4.5_0000888g0150' => 'nta', 'Nitab4.5_0001453g0040' => 'nta', 'Nitab4.5_0002827g0090' => 'nta', 'Nitab4.5_0003082g0040' => 'nta', 'Nitab4.5_0007799g0040' => 'nta', 'Nitab4.5_0008983g0010' => 'nta', 'Nitab4.5_0009017g0020' => 'nta', 'Nn1g02132' => 'nnu', 'Nn1g03492' => 'nnu', 'Nn1g03493' => 'nnu', 'Nn1g03494' => 'nnu', 'Nn1g07164' => 'nnu', 'Nn1g07291' => 'nnu', 'Nn2g10655' => 'nnu', 'Nn2g11652' => 'nnu', 'Nn2g14008' => 'nnu', 'Nn3g17476' => 'nnu', 'Nn3g17477' => 'nnu', 'Nn4g22370' => 'nnu', 'Nn4g25255' => 'nnu', 'Nn5g27755' => 'nnu', 'Nn6g34260' => 'nnu', 'Nn6g35041' => 'nnu', 'Oeu005924.1' => 'oeu', 'Oeu008383.1' => 'oeu', 'Oeu014928.1' => 'oeu', 'Oeu019889.1' => 'oeu', 'Oeu022271.1' => 'oeu', 'Oeu025271.1' => 'oeu', 'Oeu036302.1' => 'oeu', 'Oeu044100.1' => 'oeu', 'Os01g0528300' => 'osa', 'Os03g0286200' => 'osa', 'Os04g0406600' => 'osa', 'Os07g0512000' => 'osa', 'Os07g0694600' => 'osa', 'Os08g0411000' => 'osa', 'Os09g0565700' => 'osa', 'Os09g0566050' => 'osa', 'Os10g0523700' => 'osa', 'Peaxi162Scf00002g00514' => 'pax', 'Peaxi162Scf00047g01817' => 'pax', 'Peaxi162Scf00114g00001' => 'pax', 'Peaxi162Scf00147g00613' => 'pax', 'Peaxi162Scf00389g00425' => 'pax', 'PGR042G1139' => 'pgr', 'PGR042G3273' => 'pgr', 'PGR102G2180' => 'pgr', 'PGR119G0234' => 'pgr', 'PGR119G0668' => 'pgr', 'PGSC0003DMG400007122' => 'stu', 'PGSC0003DMG400016478' => 'stu', 'PGSC0003DMG400025374' => 'stu', 'PGSC0003DMG400026536' => 'stu', 'Phvul.003G079600' => 'pvu', 'Phvul.005G115600' => 'pvu', 'Phvul.005G127100' => 'pvu', 'Phvul.006G149500' => 'pvu', 'Phvul.006G149600' => 'pvu', 'Phvul.011G071800' => 'pvu', 'Phvul.011G090400' => 'pvu', 'Potri.004G013400' => 'ptr', 'Potri.004G188100' => 'ptr', 'Potri.008G195500' => 'ptr', 'Potri.009G148800' => 'ptr', 'Potri.011G004700' => 'ptr', 'Pp3c17_22810' => 'ppa', 'Pp3c18_4480' => 'ppa', 'Pp3c19_13030' => 'ppa', 'Pp3c1_33620' => 'ppa', 'Pp3c2_9380' => 'ppa', 'PRCOL_00001023' => 'pco', 'Prupe.3G216300' => 'ppe', 'Prupe.4G019500' => 'ppe', 'Prupe.6G092500' => 'ppe', 'Prupe.6G119200' => 'ppe', 'Psat0s1945g0080' => 'psa', 'Psat0s4167g0040' => 'psa', 'Psat1g185800' => 'psa', 'Psat4g006440' => 'psa', 'Psat4g006480' => 'psa', 'Psat4g168120' => 'psa', 'Psat5g255680' => 'psa', 'Psat5g261760' => 'psa', 'Psat7g222120' => 'psa', 'PSO063G7252' => 'pso', 'PSO170G4778' => 'pso', 'PSO210G2249' => 'pso', 'PSO339G2411' => 'pso', 'PSO339G2457' => 'pso', 'PSO339G2854' => 'pso', 'PSO339G4288' => 'pso', 'PSO339G4615' => 'pso', 'PSO384G2796' => 'pso', 'PSO384G2940' => 'pso', 'PSO384G4227' => 'pso', 'PSO478G1425' => 'pso', 'PSO541G3863' => 'pso', 'PSO675G0507' => 'pso', 'PSO782G0338' => 'pso', 'PSO832G0644' => 'pso', 'QL01p013664' => 'qlo', 'QL01p036598' => 'qlo', 'QL05p072984' => 'qlo', 'QL08p005768' => 'qlo', 'QL08p032743' => 'qlo', 'QL93p0073_0439' => 'qlo', 'QL93p0073_0444' => 'qlo', 'RcHm_v2.0_Chr5g0002851' => 'rch', 'RcHm_v2.0_Chr5g0055201' => 'rch', 'RcHm_v2.0_Chr5g0061191' => 'rch', 'RcHm_v2.0_Chr7g0203231' => 'rch', 'Rhsim01G0208100' => 'rsi', 'Rhsim01G0208200' => 'rsi', 'Rhsim02G0106500' => 'rsi', 'Rhsim03G0107900' => 'rsi', 'Rhsim06G0163400' => 'rsi', 'Rhsim13G0105200' => 'rsi', 'Sabra04G0006300' => 'sbr', 'Sabra04G0127000' => 'sbr', 'Sabra08G0148700' => 'sbr', 'Sabra09G0117400' => 'sbr', 'SalBow1G3326' => 'sbo', 'SalBow3G3228' => 'sbo', 'SalBow6G1634' => 'sbo', 'SalBow6G3603' => 'sbo', 'SalBow6G5266' => 'sbo', 'SalBow7G2265' => 'sbo', 'SalBow8G0850' => 'sbo', 'SalBow8G2592' => 'sbo', 'Sc05g0009240' => 'sci', 'Sc12g0002300' => 'sci', 'Sc21g0000100' => 'sci', 'Sc21g0004720' => 'sci', 'Sed0002949' => 'sed', 'Sed0004114' => 'sed', 'Sed0004306' => 'sed', 'Sed0006172' => 'sed', 'Sed0008413' => 'sed', 'Sed0013809' => 'sed', 'Sed0019556' => 'sed', 'SEGI_03570' => 'sgi', 'SEGI_07859' => 'sgi', 'SEGI_15042' => 'sgi', 'SEGI_16263' => 'sgi', 'SEGI_16552' => 'sgi', 'SEGI_24331' => 'sgi', 'SEGI_27316' => 'sgi', 'SEGI_29521' => 'sgi', 'SEGI_41342' => 'sgi', 'SGA_v2.0_scaffold27G11617' => 'sas', 'SGA_v2.0_scaffold316G48428' => 'sas', 'SGA_v2.0_scaffold49G18261' => 'sas', 'SGA_v2.0_scaffold7G03831' => 'sas', 'SGA_v2.0_scaffold93G28359' => 'sas', 'SHI02210' => 'shi', 'SHI06028' => 'shi', 'SHI06321' => 'shi', 'SMO111G0012' => 'smo', 'SMO228G0080' => 'smo', 'SMO356G0756' => 'smo', 'Solyc02g080620.3' => 'sly', 'Solyc06g074530.1' => 'sly', 'Solyc11g066890.1' => 'sly', 'Solyc11g072520.3' => 'sly', 'Sopen02g025330' => 'spe', 'Sopen06g031000' => 'spe', 'Sopen09g008240' => 'spe', 'Sopen09g025210' => 'spe', 'Sopen11g026600' => 'spe', 'Sopen11g030170' => 'spe', 'Sp1g10420' => 'spa', 'Sp3g06570' => 'spa', 'Sp4g10660' => 'spa', 'Sp5g16460' => 'spa', 'Sp6g22710' => 'spa', 'TAR365G0112' => 'tar', 'TAR369G0717' => 'tar', 'TAR374G0976' => 'tar', 'TAR623G1128' => 'tar', 'TAR626G1937' => 'tar', 'TAR627G0123' => 'tar', 'TAR628G0305' => 'tar', 'TAR636G1176' => 'tar', 'TAR636G2442' => 'tar', 'THA.LOC104800556' => 'tha', 'THA.LOC104809501' => 'tha', 'THA.LOC104815126' => 'tha', 'THA.LOC104815732' => 'tha', 'THA.LOC104823528' => 'tha', 'Thecc.02G365600' => 'tca', 'Thecc.06G222300' => 'tca', 'Thecc.09G261800' => 'tca', 'Thecc.09G291400' => 'tca', 'Thhalv10003028m.g' => 'esa', 'Thhalv10007886m.g' => 'esa', 'Thhalv10016085m.g' => 'esa', 'Thhalv10016681m.g' => 'esa', 'Thhalv10020951m.g' => 'esa', 'TPR.G15598' => 'tpr', 'TPR.G29305' => 'tpr', 'TPR.G32395' => 'tpr', 'TPR.G36998' => 'tpr', 'TPR.G4227' => 'tpr', 'TWI18G1433' => 'twi', 'TWI31G0755' => 'twi', 'TWI38G0912' => 'twi', 'TWI75G1097' => 'twi', 'TWI75G1619' => 'twi', 'TWI79G1336' => 'twi', 'unitig_0.g943' => 'ugi', 'unitig_0.g944' => 'ugi', 'unitig_22.g6646' => 'ugi', 'unitig_37.g12681' => 'ugi', 'unitig_8.g3290' => 'ugi', 'vmacro03278' => 'vma', 'vmacro12197' => 'vma', 'vmacro14478' => 'vma', 'vmacro15787' => 'vma', 'vmacro15789' => 'vma', 'vmacro15790' => 'vma', 'vmacro15806' => 'vma', 'vmacro22907' => 'vma', 'vmacro22908' => 'vma', 'vmacro22909' => 'vma', 'vmacro23108' => 'vma', 'VMungo0540G0540' => 'vmu', 'VMungo0540G2468' => 'vmu', 'VMungo1080G0390' => 'vmu', 'VMungo1080G1165' => 'vmu', 'VMungo1127G0170' => 'vmu', 'VMungo1127G2099' => 'vmu', 'VMungo1215G3013' => 'vmu', 'Zm00001eb013110' => 'zma', 'Zm00001eb084260' => 'zma', 'Zm00001eb096110' => 'zma', 'Zm00001eb217510' => 'zma', 'Zm00001eb322550' => 'zma', 'Zm00001eb390770' => 'zma', 'Zm00001eb397170' => 'zma', 'Zm00001eb404610' => 'zma', 'Zm00001eb421790' => 'zma' ), 'gf_id' => 'HOM05D000911', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000911' ), 'data_identifier' => 'HOM05D000911', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000911', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27780' => 'bna', 'A03p35380' => 'bna', 'A04p21160' => 'bna', 'A05p40570' => 'bna', 'A06p26900' => 'bna', 'A08p33230' => 'bna', 'A09p65960' => 'bna', 'A10p18290' => 'bna', 'Aa31LG1G12990' => 'aar', 'Aa31LG1G2980' => 'aar', 'Aa31LG4G14320' => 'aar', 'Aa31LG7G11800' => 'aar', 'Aa31sc36G50' => 'aar', 'Aa31sc36G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3721' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5459' => 'aag', 'Actinidia03028' => 'ach', 'Actinidia03753' => 'ach', 'Actinidia04187' => 'ach', 'Actinidia05509' => 'ach', 'Actinidia24180' => 'ach', 'Actinidia26906' => 'ach', 'Actinidia37097' => 'ach', 'Actinidia38249' => 'ach', 'Ah.01g003470' => 'amhyb', 'Ah.01g004580' => 'amhyb', 'Ah.01g014850' => 'amhyb', 'Ah.01g016830' => 'amhyb', 'Ah.14g088000' => 'amhyb', 'AL1G22980' => 'aly', 'AL3G18990' => 'aly', 'AL4G22440' => 'aly', 'AL4G33180' => 'aly', 'AL5G22920' => 'aly', 'AL6G33660' => 'aly', 'AL8G20720' => 'aly', 'Aqoxy1G00935' => 'aox', 'Aqoxy1G02094' => 'aox', 'Aqoxy2G01239' => 'aox', 'Aqoxy4G01870' => 'aox', 'Aqoxy7G00450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.36ZVTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71EM27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5D6C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH3WRE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3NCM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RIM768' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YB5YRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z36GDV' => 'arhy', 'AT1G08250' => 'ath', 'AT1G11790' => 'ath', 'AT2G27820' => 'ath', 'AT3G07630' => 'ath', 'AT3G44720' => 'ath', 'AT5G22630' => 'ath', 'ATR0693G304' => 'atr', 'ATR0794G109' => 'atr', 'ATR0820G120' => 'atr', 'ATR1159G064' => 'atr', 'Atru.chr10.2239' => 'acertr', 'Atru.chr3.3371' => 'acertr', 'Atru.chr6.3202' => 'acertr', 'AUR62006499' => 'cqu', 'AUR62012718' => 'cqu', 'AUR62021938' => 'cqu', 'AUR62023932' => 'cqu', 'AUR62025034' => 'cqu', 'AUR62025035' => 'cqu', 'AUR62038307' => 'cqu', 'AUR62043466' => 'cqu', 'BcaB02g10748' => 'bca', 'BcaB03g13231' => 'bca', 'BcaB03g14689' => 'bca', 'BcaB05g22716' => 'bca', 'BcaB06g28172' => 'bca', 'BcaB08g36413' => 'bca', 'BcaC01g02186' => 'bca', 'BcaC01g04272' => 'bca', 'BcaC02g08080' => 'bca', 'BcaC02g08227' => 'bca', 'BcaC03g13901' => 'bca', 'BcaC04g19593' => 'bca', 'BcaC04g20874' => 'bca', 'BcaC05g29557' => 'bca', 'BcaC06g35505' => 'bca', 'BcaC07g41954' => 'bca', 'BcaC07g41955' => 'bca', 'BcaC07g41956' => 'bca', 'BcaC07g42519' => 'bca', 'BcaC07g42520' => 'bca', 'BcaC07g42523' => 'bca', 'BcaC07g42524' => 'bca', 'BcaC07g42525' => 'bca', 'BcaC08g47480' => 'bca', 'BcaC08g47481' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00530' => 'bna', 'BolC2t07178H' => 'bol', 'BolC3t16567H' => 'bol', 'BolC4t27234H' => 'bol', 'BolC5t29728H' => 'bol', 'BolC5t34622H' => 'bol', 'BolC6t40321H' => 'bol', 'BolC7t42028H' => 'bol', 'BolC8t49125H' => 'bol', 'BolC8t52538H' => 'bol', 'BolC8t52539H' => 'bol', 'BolC9t56681H' => 'bol', 'BolC9t58266H' => 'bol', 'BolSC21t60294H' => 'bol', 'BraA02t05670Z' => 'bra', 'BraA03t12716Z' => 'bra', 'BraA04t17685Z' => 'bra', 'BraA05t22788Z' => 'bra', 'BraA06t24032Z' => 'bra', 'BraA06t25625Z' => 'bra', 'BraA07t27930Z' => 'bra', 'BraA08t35242Z' => 'bra', 'BraA09t38609Z' => 'bra', 'BraA10t43905Z' => 'bra', 'C02p11060' => 'bna', 'C03p42990' => 'bna', 'C03p67310' => 'bna', 'C04p56990' => 'bna', 'C04p58660' => 'bna', 'C05p09890' => 'bna', 'C05p59680' => 'bna', 'C06p19830' => 'bna', 'C06p53040' => 'bna', 'C07p15230' => 'bna', 'C08p50070' => 'bna', 'C08p50090' => 'bna', 'C09p38330' => 'bna', 'C09p53940' => 'bna', 'CAN.G1014.1' => 'can', 'CAN.G644.30' => 'can', 'CAN.G84.47' => 'can', 'CAN.G919.8' => 'can', 'CANSAT54G0113' => 'cansat', 'CANSAT54G1286' => 'cansat', 'CANSAT64G1020' => 'cansat', 'CARHR008080' => 'chi', 'CARHR008090' => 'chi', 'CARHR012130' => 'chi', 'CARHR038390' => 'chi', 'CARHR082330' => 'chi', 'CARHR120520' => 'chi', 'CARHR151470' => 'chi', 'CARHR190950' => 'chi', 'Carub.0001s0760' => 'cru', 'Carub.0001s1146' => 'cru', 'Carub.0003s0721' => 'cru', 'Carub.0004s0858' => 'cru', 'Carub.0005s1040' => 'cru', 'Carub.0006s2035' => 'cru', 'Carub.0015s0005' => 'cru', 'Ca_01607_v3' => 'car', 'Ca_01677_v3' => 'car', 'Ca_06087_v3' => 'car', 'Ca_19238_v3' => 'car', 'Ca_19373_v3' => 'car', 'Ca_21079_v3' => 'car', 'CBR_g54016' => 'cbr', 'CBR_g54018' => 'cbr', 'CBR_g54020' => 'cbr', 'Cc01_g09780' => 'ccan', 'Cc01_g11680' => 'ccan', 'Cc02_g15610' => 'ccan', 'Cc05_g04350' => 'ccan', 'Cc09_g01580' => 'ccan', 'CDE01G0795' => 'cde', 'CDE02G2024' => 'cde', 'CDE02G2260' => 'cde', 'CDE02G4561' => 'cde', 'CDE05G2733' => 'cde', 'CDE05G3422' => 'cde', 'CDE06G2003' => 'cde', 'CDE08G0576' => 'cde', 'CDE09G0048' => 'cde', 'CDE11G0805' => 'cde', 'Cfa003644' => 'cfa', 'Cfa006290' => 'cfa', 'Cfa010080' => 'cfa', 'Cfa011376' => 'cfa', 'Cfa011576' => 'cfa', 'Cfa011577' => 'cfa', 'Cfa014389' => 'cfa', 'Ciclev10006044m.g' => 'ccl', 'Ciclev10006954m.g' => 'ccl', 'Ciclev10015131m.g' => 'ccl', 'Ciclev10015580m.g' => 'ccl', 'Ciclev10028359m.g' => 'ccl', 'Ciclev10028573m.g' => 'ccl', 'CiPaw.03G159300' => 'cil', 'CiPaw.04G115100' => 'cil', 'CiPaw.09G092800' => 'cil', 'CiPaw.10G071800' => 'cil', 'CiPaw.13G105800' => 'cil', 'CiPaw.13G141000' => 'cil', 'CiPaw.14G103400' => 'cil', 'ClCG01G012700' => 'cla', 'ClCG01G012720' => 'cla', 'ClCG01G021920' => 'cla', 'ClCG02G008870' => 'cla', 'ClCG02G020840' => 'cla', 'ClCG02G021930' => 'cla', 'COL.COLO4_19302' => 'col', 'COL.COLO4_25262' => 'col', 'COL.COLO4_31788' => 'col', 'Cpa.g.c34684' => 'cpa', 'Cpa.g.c36520.1' => 'cpa', 'Cpa.g.c45626' => 'cpa', 'Cpa.g.sc121.17' => 'cpa', 'Cpa.g.sc13.22' => 'cpa', 'Cpa.g.sc87.88' => 'cpa', 'Cre06.g261800' => 'cre', 'CsaV3_1G014500' => 'csa', 'CsaV3_1G014510' => 'csa', 'CsaV3_2G034880' => 'csa', 'CsaV3_6G014760' => 'csa', 'CsaV3_6G021500' => 'csa', 'CsaV3_6G048980' => 'csa', 'CSS0002511' => 'camsi', 'CSS0007556' => 'camsi', 'CSS0008532' => 'camsi', 'CSS0009709' => 'camsi', 'CSS0010486' => 'camsi', 'CSS0016768' => 'camsi', 'CSS0023512' => 'camsi', 'CSS0025341' => 'camsi', 'CSS0027999' => 'camsi', 'CSS0028944' => 'camsi', 'CSS0032292' => 'camsi', 'CSS0032464' => 'camsi', 'CSS0037153' => 'camsi', 'CSS0039256' => 'camsi', 'CSS0048392' => 'camsi', 'CSS0050458' => 'camsi', 'DCAR_004224' => 'dca', 'DCAR_006147' => 'dca', 'DCAR_006465' => 'dca', 'DCAR_008159' => 'dca', 'DCAR_012164' => 'dca', 'DCAR_019764' => 'dca', 'Dinv05418' => 'din', 'Dinv10839' => 'din', 'Dinv12521' => 'din', 'Dinv13900' => 'din', 'Dinv29426' => 'din', 'Duzib150G0263' => 'dzi', 'Duzib168G1178' => 'dzi', 'Duzib168G1924' => 'dzi', 'Duzib170G0299' => 'dzi', 'Duzib170G0813' => 'dzi', 'Duzib235G1128' => 'dzi', 'Duzib248G1060' => 'dzi', 'ECA232G1910' => 'eca', 'ECA233G4621' => 'eca', 'ECA238G1216' => 'eca', 'ECA238G1784' => 'eca', 'ECA248G1242' => 'eca', 'EL10Ac8g20071' => 'bvu', 'EL10Ac9g21086' => 'bvu', 'EL10Ac9g22407' => 'bvu', 'EL10Ac9g22412' => 'bvu', 'Eucgr.A01119' => 'egr', 'Eucgr.E04043' => 'egr', 'Eucgr.J00428' => 'egr', 'Eucgr.J00958' => 'egr', 'FAN11G3091' => 'fan', 'FAN11G3651' => 'fan', 'FAN16G2566' => 'fan', 'FAN21G3155' => 'fan', 'FAN21G3400' => 'fan', 'FAN21G3543' => 'fan', 'FAN25G0234' => 'fan', 'FAN25G1422' => 'fan', 'FAN25G3392' => 'fan', 'FvH4_3g01940' => 'fve', 'FvH4_3g29870' => 'fve', 'FvH4_3g33680' => 'fve', 'Glyma.09G004200' => 'gma', 'Glyma.11G151288' => 'gma', 'Glyma.11G189100' => 'gma', 'Glyma.12G072500' => 'gma', 'Glyma.12G085500' => 'gma', 'Glyma.12G181800' => 'gma', 'Glyma.12G193000' => 'gma', 'Glyma.13G309300' => 'gma', 'Glyma.13G319000' => 'gma', 'Glyma.17G012600' => 'gma', 'Gohir.A06G148600' => 'ghi', 'Gohir.A07G115800' => 'ghi', 'Gohir.A08G003600' => 'ghi', 'Gohir.A09G093300' => 'ghi', 'Gohir.A09G105400' => 'ghi', 'Gohir.A09G105500' => 'ghi', 'Gohir.D06G154600' => 'ghi', 'Gohir.D07G120200' => 'ghi', 'Gohir.D08G013900' => 'ghi', 'Gohir.D09G093100' => 'ghi', 'Gohir.D09G102200' => 'ghi', 'Gohir.D09G102300' => 'ghi', 'Gorai.001G129400' => 'gra', 'Gorai.004G008200' => 'gra', 'Gorai.006G109800' => 'gra', 'Gorai.006G119500' => 'gra', 'Gorai.006G121300' => 'gra', 'Gorai.010G180700' => 'gra', 'GSVIVG01012716001' => 'vvi', 'GSVIVG01025118001' => 'vvi', 'GSVIVG01030439001' => 'vvi', 'GSVIVG01031397001' => 'vvi', 'HanXRQChr01g0004201' => 'han', 'HanXRQChr02g0054941' => 'han', 'HanXRQChr05g0141811' => 'han', 'HanXRQChr07g0197751' => 'han', 'HanXRQChr11g0346691' => 'han', 'HanXRQChr13g0396971' => 'han', 'HanXRQChr14g0432951' => 'han', 'HanXRQChr14g0452001' => 'han', 'HanXRQChr15g0496681' => 'han', 'HanXRQChr17g0557491' => 'han', 'HanXRQChr17g0557501' => 'han', 'Haze_06809' => 'cav', 'Haze_12852' => 'cav', 'Haze_15850' => 'cav', 'Haze_23446' => 'cav', 'Haze_23942' => 'cav', 'Haze_23943' => 'cav', 'Hma1.2p1_0091F.1_g046450' => 'hma', 'Hma1.2p1_0128F.1_g059910' => 'hma', 'Hma1.2p1_0249F.1_g102260' => 'hma', 'Hma1.2p1_0453F.1_g156190' => 'hma', 'Hma1.2p1_0695F.1_g204380' => 'hma', 'Hma1.2p1_0749F.1_g212650' => 'hma', 'Hma1.2p1_2156F.1_g315420' => 'hma', 'Hma1.2p1_2686F.1_g326940' => 'hma', 'HPP92_006428' => 'vpl', 'HPP92_012069' => 'vpl', 'HPP92_014129' => 'vpl', 'HPP92_014133' => 'vpl', 'HPP92_017315' => 'vpl', 'HPP92_026445' => 'vpl', 'HPP92_026446' => 'vpl', 'Hund00774' => 'sun', 'Hund07682' => 'sun', 'Hund21413' => 'sun', 'Hund23462' => 'sun', 'Hund23463' => 'sun', 'Lalb_Chr03g0027911' => 'lal', 'Lalb_Chr13g0304271' => 'lal', 'Lalb_Chr19g0137471' => 'lal', 'Lalb_Chr22g0350651' => 'lal', 'Lalb_Chr24g0395151' => 'lal', 'Lj1A1231T40' => 'lonja', 'Lj1A221T48' => 'lonja', 'Lj1C924T12' => 'lonja', 'Lj2C993G6' => 'lonja', 'Lj3g0005790' => 'lja', 'Lj3g0015432' => 'lja', 'Lj3g0017722' => 'lja', 'Lj3g0018497' => 'lja', 'Lj4g0025071' => 'lja', 'Lsat_1_v5_gn_1_129680' => 'lsa', 'Lsat_1_v5_gn_2_25321' => 'lsa', 'Lsat_1_v5_gn_2_95461' => 'lsa', 'Lsat_1_v5_gn_4_159620' => 'lsa', 'Lsat_1_v5_gn_6_41301' => 'lsa', 'Lsat_1_v5_gn_6_74660' => 'lsa', 'Lsat_1_v5_gn_7_11520' => 'lsa', 'Lsat_1_v5_gn_9_67680' => 'lsa', 'Manes.04G008300' => 'mes', 'Manes.04G008400' => 'mes', 'Manes.04G026500' => 'mes', 'Manes.10G135300' => 'mes', 'Manes.11G157300' => 'mes', 'Manes.12G074000' => 'mes', 'Manes.16G006200' => 'mes', 'Manes.17G026400' => 'mes', 'Mapoly0024s0086' => 'mpo', 'Mapoly0024s0087' => 'mpo', 'Mapoly0071s0057' => 'mpo', 'Mapoly0204s0012' => 'mpo', 'MBI04_g37681_MAGBIO' => 'mbi', 'MBI05_g17779_MAGBIO' => 'mbi', 'MBI12_g31184_MAGBIO' => 'mbi', 'MBI17_g11083_MAGBIO' => 'mbi', 'MBI18_g03883_MAGBIO' => 'mbi', 'MBI18_g28940_MAGBIO' => 'mbi', 'MCO01G690' => 'mco', 'MD03G1109900' => 'mdo', 'MD03G1134800' => 'mdo', 'MD05G1348000' => 'mdo', 'MD10G1322400' => 'mdo', 'MD11G1123300' => 'mdo', 'MD11G1157600' => 'mdo', 'Medtr2g084875' => 'mtr', 'Medtr2g088130' => 'mtr', 'Medtr4g055310' => 'mtr', 'Medtr4g061070' => 'mtr', 'Medtr4g132250' => 'mtr', 'MELO3C004795.2' => 'cme', 'MELO3C004797.2' => 'cme', 'MELO3C007396.2' => 'cme', 'MELO3C019277.2' => 'cme', 'MELO3C021449.2' => 'cme', 'MELO3C025736.2' => 'cme', 'Migut.D02175' => 'egut', 'Migut.H01573' => 'egut', 'Migut.M01327' => 'egut', 'Migut.N02513' => 'egut', 'MSTRG.14638' => 'ama', 'MSTRG.18632' => 'ama', 'MSTRG.7203' => 'ama', 'Nitab4.5_0000533g0140' => 'nta', 'Nitab4.5_0000888g0150' => 'nta', 'Nitab4.5_0001453g0040' => 'nta', 'Nitab4.5_0002827g0090' => 'nta', 'Nitab4.5_0003082g0040' => 'nta', 'Nitab4.5_0007799g0040' => 'nta', 'Nitab4.5_0008983g0010' => 'nta', 'Nitab4.5_0009017g0020' => 'nta', 'Nn1g02132' => 'nnu', 'Nn1g03492' => 'nnu', 'Nn1g03493' => 'nnu', 'Nn1g03494' => 'nnu', 'Nn1g07164' => 'nnu', 'Nn1g07291' => 'nnu', 'Nn2g10655' => 'nnu', 'Nn2g11652' => 'nnu', 'Nn2g14008' => 'nnu', 'Nn3g17476' => 'nnu', 'Nn3g17477' => 'nnu', 'Nn4g22370' => 'nnu', 'Nn4g25255' => 'nnu', 'Nn5g27755' => 'nnu', 'Nn6g34260' => 'nnu', 'Nn6g35041' => 'nnu', 'Oeu005924.1' => 'oeu', 'Oeu008383.1' => 'oeu', 'Oeu014928.1' => 'oeu', 'Oeu019889.1' => 'oeu', 'Oeu022271.1' => 'oeu', 'Oeu025271.1' => 'oeu', 'Oeu036302.1' => 'oeu', 'Oeu044100.1' => 'oeu', 'Os01g0528300' => 'osa', 'Os03g0286200' => 'osa', 'Os04g0406600' => 'osa', 'Os07g0512000' => 'osa', 'Os07g0694600' => 'osa', 'Os08g0411000' => 'osa', 'Os09g0565700' => 'osa', 'Os09g0566050' => 'osa', 'Os10g0523700' => 'osa', 'Peaxi162Scf00002g00514' => 'pax', 'Peaxi162Scf00047g01817' => 'pax', 'Peaxi162Scf00114g00001' => 'pax', 'Peaxi162Scf00147g00613' => 'pax', 'Peaxi162Scf00389g00425' => 'pax', 'PGR042G1139' => 'pgr', 'PGR042G3273' => 'pgr', 'PGR102G2180' => 'pgr', 'PGR119G0234' => 'pgr', 'PGR119G0668' => 'pgr', 'PGSC0003DMG400007122' => 'stu', 'PGSC0003DMG400016478' => 'stu', 'PGSC0003DMG400025374' => 'stu', 'PGSC0003DMG400026536' => 'stu', 'Phvul.003G079600' => 'pvu', 'Phvul.005G115600' => 'pvu', 'Phvul.005G127100' => 'pvu', 'Phvul.006G149500' => 'pvu', 'Phvul.006G149600' => 'pvu', 'Phvul.011G071800' => 'pvu', 'Phvul.011G090400' => 'pvu', 'Potri.004G013400' => 'ptr', 'Potri.004G188100' => 'ptr', 'Potri.008G195500' => 'ptr', 'Potri.009G148800' => 'ptr', 'Potri.011G004700' => 'ptr', 'Pp3c17_22810' => 'ppa', 'Pp3c18_4480' => 'ppa', 'Pp3c19_13030' => 'ppa', 'Pp3c1_33620' => 'ppa', 'Pp3c2_9380' => 'ppa', 'PRCOL_00001023' => 'pco', 'Prupe.3G216300' => 'ppe', 'Prupe.4G019500' => 'ppe', 'Prupe.6G092500' => 'ppe', 'Prupe.6G119200' => 'ppe', 'Psat0s1945g0080' => 'psa', 'Psat0s4167g0040' => 'psa', 'Psat1g185800' => 'psa', 'Psat4g006440' => 'psa', 'Psat4g006480' => 'psa', 'Psat4g168120' => 'psa', 'Psat5g255680' => 'psa', 'Psat5g261760' => 'psa', 'Psat7g222120' => 'psa', 'PSO063G7252' => 'pso', 'PSO170G4778' => 'pso', 'PSO210G2249' => 'pso', 'PSO339G2411' => 'pso', 'PSO339G2457' => 'pso', 'PSO339G2854' => 'pso', 'PSO339G4288' => 'pso', 'PSO339G4615' => 'pso', 'PSO384G2796' => 'pso', 'PSO384G2940' => 'pso', 'PSO384G4227' => 'pso', 'PSO478G1425' => 'pso', 'PSO541G3863' => 'pso', 'PSO675G0507' => 'pso', 'PSO782G0338' => 'pso', 'PSO832G0644' => 'pso', 'QL01p013664' => 'qlo', 'QL01p036598' => 'qlo', 'QL05p072984' => 'qlo', 'QL08p005768' => 'qlo', 'QL08p032743' => 'qlo', 'QL93p0073_0439' => 'qlo', 'QL93p0073_0444' => 'qlo', 'RcHm_v2.0_Chr5g0002851' => 'rch', 'RcHm_v2.0_Chr5g0055201' => 'rch', 'RcHm_v2.0_Chr5g0061191' => 'rch', 'RcHm_v2.0_Chr7g0203231' => 'rch', 'Rhsim01G0208100' => 'rsi', 'Rhsim01G0208200' => 'rsi', 'Rhsim02G0106500' => 'rsi', 'Rhsim03G0107900' => 'rsi', 'Rhsim06G0163400' => 'rsi', 'Rhsim13G0105200' => 'rsi', 'Sabra04G0006300' => 'sbr', 'Sabra04G0127000' => 'sbr', 'Sabra08G0148700' => 'sbr', 'Sabra09G0117400' => 'sbr', 'SalBow1G3326' => 'sbo', 'SalBow3G3228' => 'sbo', 'SalBow6G1634' => 'sbo', 'SalBow6G3603' => 'sbo', 'SalBow6G5266' => 'sbo', 'SalBow7G2265' => 'sbo', 'SalBow8G0850' => 'sbo', 'SalBow8G2592' => 'sbo', 'Sc05g0009240' => 'sci', 'Sc12g0002300' => 'sci', 'Sc21g0000100' => 'sci', 'Sc21g0004720' => 'sci', 'Sed0002949' => 'sed', 'Sed0004114' => 'sed', 'Sed0004306' => 'sed', 'Sed0006172' => 'sed', 'Sed0008413' => 'sed', 'Sed0013809' => 'sed', 'Sed0019556' => 'sed', 'SEGI_03570' => 'sgi', 'SEGI_07859' => 'sgi', 'SEGI_15042' => 'sgi', 'SEGI_16263' => 'sgi', 'SEGI_16552' => 'sgi', 'SEGI_24331' => 'sgi', 'SEGI_27316' => 'sgi', 'SEGI_29521' => 'sgi', 'SEGI_41342' => 'sgi', 'SGA_v2.0_scaffold27G11617' => 'sas', 'SGA_v2.0_scaffold316G48428' => 'sas', 'SGA_v2.0_scaffold49G18261' => 'sas', 'SGA_v2.0_scaffold7G03831' => 'sas', 'SGA_v2.0_scaffold93G28359' => 'sas', 'SHI02210' => 'shi', 'SHI06028' => 'shi', 'SHI06321' => 'shi', 'SMO111G0012' => 'smo', 'SMO228G0080' => 'smo', 'SMO356G0756' => 'smo', 'Solyc02g080620.3' => 'sly', 'Solyc06g074530.1' => 'sly', 'Solyc11g066890.1' => 'sly', 'Solyc11g072520.3' => 'sly', 'Sopen02g025330' => 'spe', 'Sopen06g031000' => 'spe', 'Sopen09g008240' => 'spe', 'Sopen09g025210' => 'spe', 'Sopen11g026600' => 'spe', 'Sopen11g030170' => 'spe', 'Sp1g10420' => 'spa', 'Sp3g06570' => 'spa', 'Sp4g10660' => 'spa', 'Sp5g16460' => 'spa', 'Sp6g22710' => 'spa', 'TAR365G0112' => 'tar', 'TAR369G0717' => 'tar', 'TAR374G0976' => 'tar', 'TAR623G1128' => 'tar', 'TAR626G1937' => 'tar', 'TAR627G0123' => 'tar', 'TAR628G0305' => 'tar', 'TAR636G1176' => 'tar', 'TAR636G2442' => 'tar', 'THA.LOC104800556' => 'tha', 'THA.LOC104809501' => 'tha', 'THA.LOC104815126' => 'tha', 'THA.LOC104815732' => 'tha', 'THA.LOC104823528' => 'tha', 'Thecc.02G365600' => 'tca', 'Thecc.06G222300' => 'tca', 'Thecc.09G261800' => 'tca', 'Thecc.09G291400' => 'tca', 'Thhalv10003028m.g' => 'esa', 'Thhalv10007886m.g' => 'esa', 'Thhalv10016085m.g' => 'esa', 'Thhalv10016681m.g' => 'esa', 'Thhalv10020951m.g' => 'esa', 'TPR.G15598' => 'tpr', 'TPR.G29305' => 'tpr', 'TPR.G32395' => 'tpr', 'TPR.G36998' => 'tpr', 'TPR.G4227' => 'tpr', 'TWI18G1433' => 'twi', 'TWI31G0755' => 'twi', 'TWI38G0912' => 'twi', 'TWI75G1097' => 'twi', 'TWI75G1619' => 'twi', 'TWI79G1336' => 'twi', 'unitig_0.g943' => 'ugi', 'unitig_0.g944' => 'ugi', 'unitig_22.g6646' => 'ugi', 'unitig_37.g12681' => 'ugi', 'unitig_8.g3290' => 'ugi', 'vmacro03278' => 'vma', 'vmacro12197' => 'vma', 'vmacro14478' => 'vma', 'vmacro15787' => 'vma', 'vmacro15789' => 'vma', 'vmacro15790' => 'vma', 'vmacro15806' => 'vma', 'vmacro22907' => 'vma', 'vmacro22908' => 'vma', 'vmacro22909' => 'vma', 'vmacro23108' => 'vma', 'VMungo0540G0540' => 'vmu', 'VMungo0540G2468' => 'vmu', 'VMungo1080G0390' => 'vmu', 'VMungo1080G1165' => 'vmu', 'VMungo1127G0170' => 'vmu', 'VMungo1127G2099' => 'vmu', 'VMungo1215G3013' => 'vmu', 'Zm00001eb013110' => 'zma', 'Zm00001eb084260' => 'zma', 'Zm00001eb096110' => 'zma', 'Zm00001eb217510' => 'zma', 'Zm00001eb322550' => 'zma', 'Zm00001eb390770' => 'zma', 'Zm00001eb397170' => 'zma', 'Zm00001eb404610' => 'zma', 'Zm00001eb421790' => 'zma' ) $gf_id = 'HOM05D000911' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000911' ) $data_identifier = 'HOM05D000911' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 16, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 5, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 6, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 8, 'nnu' => (int) 16, 'oeu' => (int) 8, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 5, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 16, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421790' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":"";
$selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":"";
$num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000911', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27780' => 'bna', 'A03p35380' => 'bna', 'A04p21160' => 'bna', 'A05p40570' => 'bna', 'A06p26900' => 'bna', 'A08p33230' => 'bna', 'A09p65960' => 'bna', 'A10p18290' => 'bna', 'Aa31LG1G12990' => 'aar', 'Aa31LG1G2980' => 'aar', 'Aa31LG4G14320' => 'aar', 'Aa31LG7G11800' => 'aar', 'Aa31sc36G50' => 'aar', 'Aa31sc36G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3721' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5459' => 'aag', 'Actinidia03028' => 'ach', 'Actinidia03753' => 'ach', 'Actinidia04187' => 'ach', 'Actinidia05509' => 'ach', 'Actinidia24180' => 'ach', 'Actinidia26906' => 'ach', 'Actinidia37097' => 'ach', 'Actinidia38249' => 'ach', 'Ah.01g003470' => 'amhyb', 'Ah.01g004580' => 'amhyb', 'Ah.01g014850' => 'amhyb', 'Ah.01g016830' => 'amhyb', 'Ah.14g088000' => 'amhyb', 'AL1G22980' => 'aly', 'AL3G18990' => 'aly', 'AL4G22440' => 'aly', 'AL4G33180' => 'aly', 'AL5G22920' => 'aly', 'AL6G33660' => 'aly', 'AL8G20720' => 'aly', 'Aqoxy1G00935' => 'aox', 'Aqoxy1G02094' => 'aox', 'Aqoxy2G01239' => 'aox', 'Aqoxy4G01870' => 'aox', 'Aqoxy7G00450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.36ZVTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71EM27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5D6C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH3WRE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3NCM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RIM768' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YB5YRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z36GDV' => 'arhy', 'AT1G08250' => 'ath', 'AT1G11790' => 'ath', 'AT2G27820' => 'ath', 'AT3G07630' => 'ath', 'AT3G44720' => 'ath', 'AT5G22630' => 'ath', 'ATR0693G304' => 'atr', 'ATR0794G109' => 'atr', 'ATR0820G120' => 'atr', 'ATR1159G064' => 'atr', 'Atru.chr10.2239' => 'acertr', 'Atru.chr3.3371' => 'acertr', 'Atru.chr6.3202' => 'acertr', 'AUR62006499' => 'cqu', 'AUR62012718' => 'cqu', 'AUR62021938' => 'cqu', 'AUR62023932' => 'cqu', 'AUR62025034' => 'cqu', 'AUR62025035' => 'cqu', 'AUR62038307' => 'cqu', 'AUR62043466' => 'cqu', 'BcaB02g10748' => 'bca', 'BcaB03g13231' => 'bca', 'BcaB03g14689' => 'bca', 'BcaB05g22716' => 'bca', 'BcaB06g28172' => 'bca', 'BcaB08g36413' => 'bca', 'BcaC01g02186' => 'bca', 'BcaC01g04272' => 'bca', 'BcaC02g08080' => 'bca', 'BcaC02g08227' => 'bca', 'BcaC03g13901' => 'bca', 'BcaC04g19593' => 'bca', 'BcaC04g20874' => 'bca', 'BcaC05g29557' => 'bca', 'BcaC06g35505' => 'bca', 'BcaC07g41954' => 'bca', 'BcaC07g41955' => 'bca', 'BcaC07g41956' => 'bca', 'BcaC07g42519' => 'bca', 'BcaC07g42520' => 'bca', 'BcaC07g42523' => 'bca', 'BcaC07g42524' => 'bca', 'BcaC07g42525' => 'bca', 'BcaC08g47480' => 'bca', 'BcaC08g47481' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00530' => 'bna', 'BolC2t07178H' => 'bol', 'BolC3t16567H' => 'bol', 'BolC4t27234H' => 'bol', 'BolC5t29728H' => 'bol', 'BolC5t34622H' => 'bol', 'BolC6t40321H' => 'bol', 'BolC7t42028H' => 'bol', 'BolC8t49125H' => 'bol', 'BolC8t52538H' => 'bol', 'BolC8t52539H' => 'bol', 'BolC9t56681H' => 'bol', 'BolC9t58266H' => 'bol', 'BolSC21t60294H' => 'bol', 'BraA02t05670Z' => 'bra', 'BraA03t12716Z' => 'bra', 'BraA04t17685Z' => 'bra', 'BraA05t22788Z' => 'bra', 'BraA06t24032Z' => 'bra', 'BraA06t25625Z' => 'bra', 'BraA07t27930Z' => 'bra', 'BraA08t35242Z' => 'bra', 'BraA09t38609Z' => 'bra', 'BraA10t43905Z' => 'bra', 'C02p11060' => 'bna', 'C03p42990' => 'bna', 'C03p67310' => 'bna', 'C04p56990' => 'bna', 'C04p58660' => 'bna', 'C05p09890' => 'bna', 'C05p59680' => 'bna', 'C06p19830' => 'bna', 'C06p53040' => 'bna', 'C07p15230' => 'bna', 'C08p50070' => 'bna', 'C08p50090' => 'bna', 'C09p38330' => 'bna', 'C09p53940' => 'bna', 'CAN.G1014.1' => 'can', 'CAN.G644.30' => 'can', 'CAN.G84.47' => 'can', 'CAN.G919.8' => 'can', 'CANSAT54G0113' => 'cansat', 'CANSAT54G1286' => 'cansat', 'CANSAT64G1020' => 'cansat', 'CARHR008080' => 'chi', 'CARHR008090' => 'chi', 'CARHR012130' => 'chi', 'CARHR038390' => 'chi', 'CARHR082330' => 'chi', 'CARHR120520' => 'chi', 'CARHR151470' => 'chi', 'CARHR190950' => 'chi', 'Carub.0001s0760' => 'cru', 'Carub.0001s1146' => 'cru', 'Carub.0003s0721' => 'cru', 'Carub.0004s0858' => 'cru', 'Carub.0005s1040' => 'cru', 'Carub.0006s2035' => 'cru', 'Carub.0015s0005' => 'cru', 'Ca_01607_v3' => 'car', 'Ca_01677_v3' => 'car', 'Ca_06087_v3' => 'car', 'Ca_19238_v3' => 'car', 'Ca_19373_v3' => 'car', 'Ca_21079_v3' => 'car', 'CBR_g54016' => 'cbr', 'CBR_g54018' => 'cbr', 'CBR_g54020' => 'cbr', 'Cc01_g09780' => 'ccan', 'Cc01_g11680' => 'ccan', 'Cc02_g15610' => 'ccan', 'Cc05_g04350' => 'ccan', 'Cc09_g01580' => 'ccan', 'CDE01G0795' => 'cde', 'CDE02G2024' => 'cde', 'CDE02G2260' => 'cde', 'CDE02G4561' => 'cde', 'CDE05G2733' => 'cde', 'CDE05G3422' => 'cde', 'CDE06G2003' => 'cde', 'CDE08G0576' => 'cde', 'CDE09G0048' => 'cde', 'CDE11G0805' => 'cde', 'Cfa003644' => 'cfa', 'Cfa006290' => 'cfa', 'Cfa010080' => 'cfa', 'Cfa011376' => 'cfa', 'Cfa011576' => 'cfa', 'Cfa011577' => 'cfa', 'Cfa014389' => 'cfa', 'Ciclev10006044m.g' => 'ccl', 'Ciclev10006954m.g' => 'ccl', 'Ciclev10015131m.g' => 'ccl', 'Ciclev10015580m.g' => 'ccl', 'Ciclev10028359m.g' => 'ccl', 'Ciclev10028573m.g' => 'ccl', 'CiPaw.03G159300' => 'cil', 'CiPaw.04G115100' => 'cil', 'CiPaw.09G092800' => 'cil', 'CiPaw.10G071800' => 'cil', 'CiPaw.13G105800' => 'cil', 'CiPaw.13G141000' => 'cil', 'CiPaw.14G103400' => 'cil', 'ClCG01G012700' => 'cla', 'ClCG01G012720' => 'cla', 'ClCG01G021920' => 'cla', 'ClCG02G008870' => 'cla', 'ClCG02G020840' => 'cla', 'ClCG02G021930' => 'cla', 'COL.COLO4_19302' => 'col', 'COL.COLO4_25262' => 'col', 'COL.COLO4_31788' => 'col', 'Cpa.g.c34684' => 'cpa', 'Cpa.g.c36520.1' => 'cpa', 'Cpa.g.c45626' => 'cpa', 'Cpa.g.sc121.17' => 'cpa', 'Cpa.g.sc13.22' => 'cpa', 'Cpa.g.sc87.88' => 'cpa', 'Cre06.g261800' => 'cre', 'CsaV3_1G014500' => 'csa', 'CsaV3_1G014510' => 'csa', 'CsaV3_2G034880' => 'csa', 'CsaV3_6G014760' => 'csa', 'CsaV3_6G021500' => 'csa', 'CsaV3_6G048980' => 'csa', 'CSS0002511' => 'camsi', 'CSS0007556' => 'camsi', 'CSS0008532' => 'camsi', 'CSS0009709' => 'camsi', 'CSS0010486' => 'camsi', 'CSS0016768' => 'camsi', 'CSS0023512' => 'camsi', 'CSS0025341' => 'camsi', 'CSS0027999' => 'camsi', 'CSS0028944' => 'camsi', 'CSS0032292' => 'camsi', 'CSS0032464' => 'camsi', 'CSS0037153' => 'camsi', 'CSS0039256' => 'camsi', 'CSS0048392' => 'camsi', 'CSS0050458' => 'camsi', 'DCAR_004224' => 'dca', 'DCAR_006147' => 'dca', 'DCAR_006465' => 'dca', 'DCAR_008159' => 'dca', 'DCAR_012164' => 'dca', 'DCAR_019764' => 'dca', 'Dinv05418' => 'din', 'Dinv10839' => 'din', 'Dinv12521' => 'din', 'Dinv13900' => 'din', 'Dinv29426' => 'din', 'Duzib150G0263' => 'dzi', 'Duzib168G1178' => 'dzi', 'Duzib168G1924' => 'dzi', 'Duzib170G0299' => 'dzi', 'Duzib170G0813' => 'dzi', 'Duzib235G1128' => 'dzi', 'Duzib248G1060' => 'dzi', 'ECA232G1910' => 'eca', 'ECA233G4621' => 'eca', 'ECA238G1216' => 'eca', 'ECA238G1784' => 'eca', 'ECA248G1242' => 'eca', 'EL10Ac8g20071' => 'bvu', 'EL10Ac9g21086' => 'bvu', 'EL10Ac9g22407' => 'bvu', 'EL10Ac9g22412' => 'bvu', 'Eucgr.A01119' => 'egr', 'Eucgr.E04043' => 'egr', 'Eucgr.J00428' => 'egr', 'Eucgr.J00958' => 'egr', 'FAN11G3091' => 'fan', 'FAN11G3651' => 'fan', 'FAN16G2566' => 'fan', 'FAN21G3155' => 'fan', 'FAN21G3400' => 'fan', 'FAN21G3543' => 'fan', 'FAN25G0234' => 'fan', 'FAN25G1422' => 'fan', 'FAN25G3392' => 'fan', 'FvH4_3g01940' => 'fve', 'FvH4_3g29870' => 'fve', 'FvH4_3g33680' => 'fve', 'Glyma.09G004200' => 'gma', 'Glyma.11G151288' => 'gma', 'Glyma.11G189100' => 'gma', 'Glyma.12G072500' => 'gma', 'Glyma.12G085500' => 'gma', 'Glyma.12G181800' => 'gma', 'Glyma.12G193000' => 'gma', 'Glyma.13G309300' => 'gma', 'Glyma.13G319000' => 'gma', 'Glyma.17G012600' => 'gma', 'Gohir.A06G148600' => 'ghi', 'Gohir.A07G115800' => 'ghi', 'Gohir.A08G003600' => 'ghi', 'Gohir.A09G093300' => 'ghi', 'Gohir.A09G105400' => 'ghi', 'Gohir.A09G105500' => 'ghi', 'Gohir.D06G154600' => 'ghi', 'Gohir.D07G120200' => 'ghi', 'Gohir.D08G013900' => 'ghi', 'Gohir.D09G093100' => 'ghi', 'Gohir.D09G102200' => 'ghi', 'Gohir.D09G102300' => 'ghi', 'Gorai.001G129400' => 'gra', 'Gorai.004G008200' => 'gra', 'Gorai.006G109800' => 'gra', 'Gorai.006G119500' => 'gra', 'Gorai.006G121300' => 'gra', 'Gorai.010G180700' => 'gra', 'GSVIVG01012716001' => 'vvi', 'GSVIVG01025118001' => 'vvi', 'GSVIVG01030439001' => 'vvi', 'GSVIVG01031397001' => 'vvi', 'HanXRQChr01g0004201' => 'han', 'HanXRQChr02g0054941' => 'han', 'HanXRQChr05g0141811' => 'han', 'HanXRQChr07g0197751' => 'han', 'HanXRQChr11g0346691' => 'han', 'HanXRQChr13g0396971' => 'han', 'HanXRQChr14g0432951' => 'han', 'HanXRQChr14g0452001' => 'han', 'HanXRQChr15g0496681' => 'han', 'HanXRQChr17g0557491' => 'han', 'HanXRQChr17g0557501' => 'han', 'Haze_06809' => 'cav', 'Haze_12852' => 'cav', 'Haze_15850' => 'cav', 'Haze_23446' => 'cav', 'Haze_23942' => 'cav', 'Haze_23943' => 'cav', 'Hma1.2p1_0091F.1_g046450' => 'hma', 'Hma1.2p1_0128F.1_g059910' => 'hma', 'Hma1.2p1_0249F.1_g102260' => 'hma', 'Hma1.2p1_0453F.1_g156190' => 'hma', 'Hma1.2p1_0695F.1_g204380' => 'hma', 'Hma1.2p1_0749F.1_g212650' => 'hma', 'Hma1.2p1_2156F.1_g315420' => 'hma', 'Hma1.2p1_2686F.1_g326940' => 'hma', 'HPP92_006428' => 'vpl', 'HPP92_012069' => 'vpl', 'HPP92_014129' => 'vpl', 'HPP92_014133' => 'vpl', 'HPP92_017315' => 'vpl', 'HPP92_026445' => 'vpl', 'HPP92_026446' => 'vpl', 'Hund00774' => 'sun', 'Hund07682' => 'sun', 'Hund21413' => 'sun', 'Hund23462' => 'sun', 'Hund23463' => 'sun', 'Lalb_Chr03g0027911' => 'lal', 'Lalb_Chr13g0304271' => 'lal', 'Lalb_Chr19g0137471' => 'lal', 'Lalb_Chr22g0350651' => 'lal', 'Lalb_Chr24g0395151' => 'lal', 'Lj1A1231T40' => 'lonja', 'Lj1A221T48' => 'lonja', 'Lj1C924T12' => 'lonja', 'Lj2C993G6' => 'lonja', 'Lj3g0005790' => 'lja', 'Lj3g0015432' => 'lja', 'Lj3g0017722' => 'lja', 'Lj3g0018497' => 'lja', 'Lj4g0025071' => 'lja', 'Lsat_1_v5_gn_1_129680' => 'lsa', 'Lsat_1_v5_gn_2_25321' => 'lsa', 'Lsat_1_v5_gn_2_95461' => 'lsa', 'Lsat_1_v5_gn_4_159620' => 'lsa', 'Lsat_1_v5_gn_6_41301' => 'lsa', 'Lsat_1_v5_gn_6_74660' => 'lsa', 'Lsat_1_v5_gn_7_11520' => 'lsa', 'Lsat_1_v5_gn_9_67680' => 'lsa', 'Manes.04G008300' => 'mes', 'Manes.04G008400' => 'mes', 'Manes.04G026500' => 'mes', 'Manes.10G135300' => 'mes', 'Manes.11G157300' => 'mes', 'Manes.12G074000' => 'mes', 'Manes.16G006200' => 'mes', 'Manes.17G026400' => 'mes', 'Mapoly0024s0086' => 'mpo', 'Mapoly0024s0087' => 'mpo', 'Mapoly0071s0057' => 'mpo', 'Mapoly0204s0012' => 'mpo', 'MBI04_g37681_MAGBIO' => 'mbi', 'MBI05_g17779_MAGBIO' => 'mbi', 'MBI12_g31184_MAGBIO' => 'mbi', 'MBI17_g11083_MAGBIO' => 'mbi', 'MBI18_g03883_MAGBIO' => 'mbi', 'MBI18_g28940_MAGBIO' => 'mbi', 'MCO01G690' => 'mco', 'MD03G1109900' => 'mdo', 'MD03G1134800' => 'mdo', 'MD05G1348000' => 'mdo', 'MD10G1322400' => 'mdo', 'MD11G1123300' => 'mdo', 'MD11G1157600' => 'mdo', 'Medtr2g084875' => 'mtr', 'Medtr2g088130' => 'mtr', 'Medtr4g055310' => 'mtr', 'Medtr4g061070' => 'mtr', 'Medtr4g132250' => 'mtr', 'MELO3C004795.2' => 'cme', 'MELO3C004797.2' => 'cme', 'MELO3C007396.2' => 'cme', 'MELO3C019277.2' => 'cme', 'MELO3C021449.2' => 'cme', 'MELO3C025736.2' => 'cme', 'Migut.D02175' => 'egut', 'Migut.H01573' => 'egut', 'Migut.M01327' => 'egut', 'Migut.N02513' => 'egut', 'MSTRG.14638' => 'ama', 'MSTRG.18632' => 'ama', 'MSTRG.7203' => 'ama', 'Nitab4.5_0000533g0140' => 'nta', 'Nitab4.5_0000888g0150' => 'nta', 'Nitab4.5_0001453g0040' => 'nta', 'Nitab4.5_0002827g0090' => 'nta', 'Nitab4.5_0003082g0040' => 'nta', 'Nitab4.5_0007799g0040' => 'nta', 'Nitab4.5_0008983g0010' => 'nta', 'Nitab4.5_0009017g0020' => 'nta', 'Nn1g02132' => 'nnu', 'Nn1g03492' => 'nnu', 'Nn1g03493' => 'nnu', 'Nn1g03494' => 'nnu', 'Nn1g07164' => 'nnu', 'Nn1g07291' => 'nnu', 'Nn2g10655' => 'nnu', 'Nn2g11652' => 'nnu', 'Nn2g14008' => 'nnu', 'Nn3g17476' => 'nnu', 'Nn3g17477' => 'nnu', 'Nn4g22370' => 'nnu', 'Nn4g25255' => 'nnu', 'Nn5g27755' => 'nnu', 'Nn6g34260' => 'nnu', 'Nn6g35041' => 'nnu', 'Oeu005924.1' => 'oeu', 'Oeu008383.1' => 'oeu', 'Oeu014928.1' => 'oeu', 'Oeu019889.1' => 'oeu', 'Oeu022271.1' => 'oeu', 'Oeu025271.1' => 'oeu', 'Oeu036302.1' => 'oeu', 'Oeu044100.1' => 'oeu', 'Os01g0528300' => 'osa', 'Os03g0286200' => 'osa', 'Os04g0406600' => 'osa', 'Os07g0512000' => 'osa', 'Os07g0694600' => 'osa', 'Os08g0411000' => 'osa', 'Os09g0565700' => 'osa', 'Os09g0566050' => 'osa', 'Os10g0523700' => 'osa', 'Peaxi162Scf00002g00514' => 'pax', 'Peaxi162Scf00047g01817' => 'pax', 'Peaxi162Scf00114g00001' => 'pax', 'Peaxi162Scf00147g00613' => 'pax', 'Peaxi162Scf00389g00425' => 'pax', 'PGR042G1139' => 'pgr', 'PGR042G3273' => 'pgr', 'PGR102G2180' => 'pgr', 'PGR119G0234' => 'pgr', 'PGR119G0668' => 'pgr', 'PGSC0003DMG400007122' => 'stu', 'PGSC0003DMG400016478' => 'stu', 'PGSC0003DMG400025374' => 'stu', 'PGSC0003DMG400026536' => 'stu', 'Phvul.003G079600' => 'pvu', 'Phvul.005G115600' => 'pvu', 'Phvul.005G127100' => 'pvu', 'Phvul.006G149500' => 'pvu', 'Phvul.006G149600' => 'pvu', 'Phvul.011G071800' => 'pvu', 'Phvul.011G090400' => 'pvu', 'Potri.004G013400' => 'ptr', 'Potri.004G188100' => 'ptr', 'Potri.008G195500' => 'ptr', 'Potri.009G148800' => 'ptr', 'Potri.011G004700' => 'ptr', 'Pp3c17_22810' => 'ppa', 'Pp3c18_4480' => 'ppa', 'Pp3c19_13030' => 'ppa', 'Pp3c1_33620' => 'ppa', 'Pp3c2_9380' => 'ppa', 'PRCOL_00001023' => 'pco', 'Prupe.3G216300' => 'ppe', 'Prupe.4G019500' => 'ppe', 'Prupe.6G092500' => 'ppe', 'Prupe.6G119200' => 'ppe', 'Psat0s1945g0080' => 'psa', 'Psat0s4167g0040' => 'psa', 'Psat1g185800' => 'psa', 'Psat4g006440' => 'psa', 'Psat4g006480' => 'psa', 'Psat4g168120' => 'psa', 'Psat5g255680' => 'psa', 'Psat5g261760' => 'psa', 'Psat7g222120' => 'psa', 'PSO063G7252' => 'pso', 'PSO170G4778' => 'pso', 'PSO210G2249' => 'pso', 'PSO339G2411' => 'pso', 'PSO339G2457' => 'pso', 'PSO339G2854' => 'pso', 'PSO339G4288' => 'pso', 'PSO339G4615' => 'pso', 'PSO384G2796' => 'pso', 'PSO384G2940' => 'pso', 'PSO384G4227' => 'pso', 'PSO478G1425' => 'pso', 'PSO541G3863' => 'pso', 'PSO675G0507' => 'pso', 'PSO782G0338' => 'pso', 'PSO832G0644' => 'pso', 'QL01p013664' => 'qlo', 'QL01p036598' => 'qlo', 'QL05p072984' => 'qlo', 'QL08p005768' => 'qlo', 'QL08p032743' => 'qlo', 'QL93p0073_0439' => 'qlo', 'QL93p0073_0444' => 'qlo', 'RcHm_v2.0_Chr5g0002851' => 'rch', 'RcHm_v2.0_Chr5g0055201' => 'rch', 'RcHm_v2.0_Chr5g0061191' => 'rch', 'RcHm_v2.0_Chr7g0203231' => 'rch', 'Rhsim01G0208100' => 'rsi', 'Rhsim01G0208200' => 'rsi', 'Rhsim02G0106500' => 'rsi', 'Rhsim03G0107900' => 'rsi', 'Rhsim06G0163400' => 'rsi', 'Rhsim13G0105200' => 'rsi', 'Sabra04G0006300' => 'sbr', 'Sabra04G0127000' => 'sbr', 'Sabra08G0148700' => 'sbr', 'Sabra09G0117400' => 'sbr', 'SalBow1G3326' => 'sbo', 'SalBow3G3228' => 'sbo', 'SalBow6G1634' => 'sbo', 'SalBow6G3603' => 'sbo', 'SalBow6G5266' => 'sbo', 'SalBow7G2265' => 'sbo', 'SalBow8G0850' => 'sbo', 'SalBow8G2592' => 'sbo', 'Sc05g0009240' => 'sci', 'Sc12g0002300' => 'sci', 'Sc21g0000100' => 'sci', 'Sc21g0004720' => 'sci', 'Sed0002949' => 'sed', 'Sed0004114' => 'sed', 'Sed0004306' => 'sed', 'Sed0006172' => 'sed', 'Sed0008413' => 'sed', 'Sed0013809' => 'sed', 'Sed0019556' => 'sed', 'SEGI_03570' => 'sgi', 'SEGI_07859' => 'sgi', 'SEGI_15042' => 'sgi', 'SEGI_16263' => 'sgi', 'SEGI_16552' => 'sgi', 'SEGI_24331' => 'sgi', 'SEGI_27316' => 'sgi', 'SEGI_29521' => 'sgi', 'SEGI_41342' => 'sgi', 'SGA_v2.0_scaffold27G11617' => 'sas', 'SGA_v2.0_scaffold316G48428' => 'sas', 'SGA_v2.0_scaffold49G18261' => 'sas', 'SGA_v2.0_scaffold7G03831' => 'sas', 'SGA_v2.0_scaffold93G28359' => 'sas', 'SHI02210' => 'shi', 'SHI06028' => 'shi', 'SHI06321' => 'shi', 'SMO111G0012' => 'smo', 'SMO228G0080' => 'smo', 'SMO356G0756' => 'smo', 'Solyc02g080620.3' => 'sly', 'Solyc06g074530.1' => 'sly', 'Solyc11g066890.1' => 'sly', 'Solyc11g072520.3' => 'sly', 'Sopen02g025330' => 'spe', 'Sopen06g031000' => 'spe', 'Sopen09g008240' => 'spe', 'Sopen09g025210' => 'spe', 'Sopen11g026600' => 'spe', 'Sopen11g030170' => 'spe', 'Sp1g10420' => 'spa', 'Sp3g06570' => 'spa', 'Sp4g10660' => 'spa', 'Sp5g16460' => 'spa', 'Sp6g22710' => 'spa', 'TAR365G0112' => 'tar', 'TAR369G0717' => 'tar', 'TAR374G0976' => 'tar', 'TAR623G1128' => 'tar', 'TAR626G1937' => 'tar', 'TAR627G0123' => 'tar', 'TAR628G0305' => 'tar', 'TAR636G1176' => 'tar', 'TAR636G2442' => 'tar', 'THA.LOC104800556' => 'tha', 'THA.LOC104809501' => 'tha', 'THA.LOC104815126' => 'tha', 'THA.LOC104815732' => 'tha', 'THA.LOC104823528' => 'tha', 'Thecc.02G365600' => 'tca', 'Thecc.06G222300' => 'tca', 'Thecc.09G261800' => 'tca', 'Thecc.09G291400' => 'tca', 'Thhalv10003028m.g' => 'esa', 'Thhalv10007886m.g' => 'esa', 'Thhalv10016085m.g' => 'esa', 'Thhalv10016681m.g' => 'esa', 'Thhalv10020951m.g' => 'esa', 'TPR.G15598' => 'tpr', 'TPR.G29305' => 'tpr', 'TPR.G32395' => 'tpr', 'TPR.G36998' => 'tpr', 'TPR.G4227' => 'tpr', 'TWI18G1433' => 'twi', 'TWI31G0755' => 'twi', 'TWI38G0912' => 'twi', 'TWI75G1097' => 'twi', 'TWI75G1619' => 'twi', 'TWI79G1336' => 'twi', 'unitig_0.g943' => 'ugi', 'unitig_0.g944' => 'ugi', 'unitig_22.g6646' => 'ugi', 'unitig_37.g12681' => 'ugi', 'unitig_8.g3290' => 'ugi', 'vmacro03278' => 'vma', 'vmacro12197' => 'vma', 'vmacro14478' => 'vma', 'vmacro15787' => 'vma', 'vmacro15789' => 'vma', 'vmacro15790' => 'vma', 'vmacro15806' => 'vma', 'vmacro22907' => 'vma', 'vmacro22908' => 'vma', 'vmacro22909' => 'vma', 'vmacro23108' => 'vma', 'VMungo0540G0540' => 'vmu', 'VMungo0540G2468' => 'vmu', 'VMungo1080G0390' => 'vmu', 'VMungo1080G1165' => 'vmu', 'VMungo1127G0170' => 'vmu', 'VMungo1127G2099' => 'vmu', 'VMungo1215G3013' => 'vmu', 'Zm00001eb013110' => 'zma', 'Zm00001eb084260' => 'zma', 'Zm00001eb096110' => 'zma', 'Zm00001eb217510' => 'zma', 'Zm00001eb322550' => 'zma', 'Zm00001eb390770' => 'zma', 'Zm00001eb397170' => 'zma', 'Zm00001eb404610' => 'zma', 'Zm00001eb421790' => 'zma' ), 'gf_id' => 'HOM05D000911', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000911' ), 'data_identifier' => 'HOM05D000911', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000911', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27780' => 'bna', 'A03p35380' => 'bna', 'A04p21160' => 'bna', 'A05p40570' => 'bna', 'A06p26900' => 'bna', 'A08p33230' => 'bna', 'A09p65960' => 'bna', 'A10p18290' => 'bna', 'Aa31LG1G12990' => 'aar', 'Aa31LG1G2980' => 'aar', 'Aa31LG4G14320' => 'aar', 'Aa31LG7G11800' => 'aar', 'Aa31sc36G50' => 'aar', 'Aa31sc36G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3721' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5459' => 'aag', 'Actinidia03028' => 'ach', 'Actinidia03753' => 'ach', 'Actinidia04187' => 'ach', 'Actinidia05509' => 'ach', 'Actinidia24180' => 'ach', 'Actinidia26906' => 'ach', 'Actinidia37097' => 'ach', 'Actinidia38249' => 'ach', 'Ah.01g003470' => 'amhyb', 'Ah.01g004580' => 'amhyb', 'Ah.01g014850' => 'amhyb', 'Ah.01g016830' => 'amhyb', 'Ah.14g088000' => 'amhyb', 'AL1G22980' => 'aly', 'AL3G18990' => 'aly', 'AL4G22440' => 'aly', 'AL4G33180' => 'aly', 'AL5G22920' => 'aly', 'AL6G33660' => 'aly', 'AL8G20720' => 'aly', 'Aqoxy1G00935' => 'aox', 'Aqoxy1G02094' => 'aox', 'Aqoxy2G01239' => 'aox', 'Aqoxy4G01870' => 'aox', 'Aqoxy7G00450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.36ZVTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71EM27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5D6C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH3WRE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3NCM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RIM768' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YB5YRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z36GDV' => 'arhy', 'AT1G08250' => 'ath', 'AT1G11790' => 'ath', 'AT2G27820' => 'ath', 'AT3G07630' => 'ath', 'AT3G44720' => 'ath', 'AT5G22630' => 'ath', 'ATR0693G304' => 'atr', 'ATR0794G109' => 'atr', 'ATR0820G120' => 'atr', 'ATR1159G064' => 'atr', 'Atru.chr10.2239' => 'acertr', 'Atru.chr3.3371' => 'acertr', 'Atru.chr6.3202' => 'acertr', 'AUR62006499' => 'cqu', 'AUR62012718' => 'cqu', 'AUR62021938' => 'cqu', 'AUR62023932' => 'cqu', 'AUR62025034' => 'cqu', 'AUR62025035' => 'cqu', 'AUR62038307' => 'cqu', 'AUR62043466' => 'cqu', 'BcaB02g10748' => 'bca', 'BcaB03g13231' => 'bca', 'BcaB03g14689' => 'bca', 'BcaB05g22716' => 'bca', 'BcaB06g28172' => 'bca', 'BcaB08g36413' => 'bca', 'BcaC01g02186' => 'bca', 'BcaC01g04272' => 'bca', 'BcaC02g08080' => 'bca', 'BcaC02g08227' => 'bca', 'BcaC03g13901' => 'bca', 'BcaC04g19593' => 'bca', 'BcaC04g20874' => 'bca', 'BcaC05g29557' => 'bca', 'BcaC06g35505' => 'bca', 'BcaC07g41954' => 'bca', 'BcaC07g41955' => 'bca', 'BcaC07g41956' => 'bca', 'BcaC07g42519' => 'bca', 'BcaC07g42520' => 'bca', 'BcaC07g42523' => 'bca', 'BcaC07g42524' => 'bca', 'BcaC07g42525' => 'bca', 'BcaC08g47480' => 'bca', 'BcaC08g47481' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00530' => 'bna', 'BolC2t07178H' => 'bol', 'BolC3t16567H' => 'bol', 'BolC4t27234H' => 'bol', 'BolC5t29728H' => 'bol', 'BolC5t34622H' => 'bol', 'BolC6t40321H' => 'bol', 'BolC7t42028H' => 'bol', 'BolC8t49125H' => 'bol', 'BolC8t52538H' => 'bol', 'BolC8t52539H' => 'bol', 'BolC9t56681H' => 'bol', 'BolC9t58266H' => 'bol', 'BolSC21t60294H' => 'bol', 'BraA02t05670Z' => 'bra', 'BraA03t12716Z' => 'bra', 'BraA04t17685Z' => 'bra', 'BraA05t22788Z' => 'bra', 'BraA06t24032Z' => 'bra', 'BraA06t25625Z' => 'bra', 'BraA07t27930Z' => 'bra', 'BraA08t35242Z' => 'bra', 'BraA09t38609Z' => 'bra', 'BraA10t43905Z' => 'bra', 'C02p11060' => 'bna', 'C03p42990' => 'bna', 'C03p67310' => 'bna', 'C04p56990' => 'bna', 'C04p58660' => 'bna', 'C05p09890' => 'bna', 'C05p59680' => 'bna', 'C06p19830' => 'bna', 'C06p53040' => 'bna', 'C07p15230' => 'bna', 'C08p50070' => 'bna', 'C08p50090' => 'bna', 'C09p38330' => 'bna', 'C09p53940' => 'bna', 'CAN.G1014.1' => 'can', 'CAN.G644.30' => 'can', 'CAN.G84.47' => 'can', 'CAN.G919.8' => 'can', 'CANSAT54G0113' => 'cansat', 'CANSAT54G1286' => 'cansat', 'CANSAT64G1020' => 'cansat', 'CARHR008080' => 'chi', 'CARHR008090' => 'chi', 'CARHR012130' => 'chi', 'CARHR038390' => 'chi', 'CARHR082330' => 'chi', 'CARHR120520' => 'chi', 'CARHR151470' => 'chi', 'CARHR190950' => 'chi', 'Carub.0001s0760' => 'cru', 'Carub.0001s1146' => 'cru', 'Carub.0003s0721' => 'cru', 'Carub.0004s0858' => 'cru', 'Carub.0005s1040' => 'cru', 'Carub.0006s2035' => 'cru', 'Carub.0015s0005' => 'cru', 'Ca_01607_v3' => 'car', 'Ca_01677_v3' => 'car', 'Ca_06087_v3' => 'car', 'Ca_19238_v3' => 'car', 'Ca_19373_v3' => 'car', 'Ca_21079_v3' => 'car', 'CBR_g54016' => 'cbr', 'CBR_g54018' => 'cbr', 'CBR_g54020' => 'cbr', 'Cc01_g09780' => 'ccan', 'Cc01_g11680' => 'ccan', 'Cc02_g15610' => 'ccan', 'Cc05_g04350' => 'ccan', 'Cc09_g01580' => 'ccan', 'CDE01G0795' => 'cde', 'CDE02G2024' => 'cde', 'CDE02G2260' => 'cde', 'CDE02G4561' => 'cde', 'CDE05G2733' => 'cde', 'CDE05G3422' => 'cde', 'CDE06G2003' => 'cde', 'CDE08G0576' => 'cde', 'CDE09G0048' => 'cde', 'CDE11G0805' => 'cde', 'Cfa003644' => 'cfa', 'Cfa006290' => 'cfa', 'Cfa010080' => 'cfa', 'Cfa011376' => 'cfa', 'Cfa011576' => 'cfa', 'Cfa011577' => 'cfa', 'Cfa014389' => 'cfa', 'Ciclev10006044m.g' => 'ccl', 'Ciclev10006954m.g' => 'ccl', 'Ciclev10015131m.g' => 'ccl', 'Ciclev10015580m.g' => 'ccl', 'Ciclev10028359m.g' => 'ccl', 'Ciclev10028573m.g' => 'ccl', 'CiPaw.03G159300' => 'cil', 'CiPaw.04G115100' => 'cil', 'CiPaw.09G092800' => 'cil', 'CiPaw.10G071800' => 'cil', 'CiPaw.13G105800' => 'cil', 'CiPaw.13G141000' => 'cil', 'CiPaw.14G103400' => 'cil', 'ClCG01G012700' => 'cla', 'ClCG01G012720' => 'cla', 'ClCG01G021920' => 'cla', 'ClCG02G008870' => 'cla', 'ClCG02G020840' => 'cla', 'ClCG02G021930' => 'cla', 'COL.COLO4_19302' => 'col', 'COL.COLO4_25262' => 'col', 'COL.COLO4_31788' => 'col', 'Cpa.g.c34684' => 'cpa', 'Cpa.g.c36520.1' => 'cpa', 'Cpa.g.c45626' => 'cpa', 'Cpa.g.sc121.17' => 'cpa', 'Cpa.g.sc13.22' => 'cpa', 'Cpa.g.sc87.88' => 'cpa', 'Cre06.g261800' => 'cre', 'CsaV3_1G014500' => 'csa', 'CsaV3_1G014510' => 'csa', 'CsaV3_2G034880' => 'csa', 'CsaV3_6G014760' => 'csa', 'CsaV3_6G021500' => 'csa', 'CsaV3_6G048980' => 'csa', 'CSS0002511' => 'camsi', 'CSS0007556' => 'camsi', 'CSS0008532' => 'camsi', 'CSS0009709' => 'camsi', 'CSS0010486' => 'camsi', 'CSS0016768' => 'camsi', 'CSS0023512' => 'camsi', 'CSS0025341' => 'camsi', 'CSS0027999' => 'camsi', 'CSS0028944' => 'camsi', 'CSS0032292' => 'camsi', 'CSS0032464' => 'camsi', 'CSS0037153' => 'camsi', 'CSS0039256' => 'camsi', 'CSS0048392' => 'camsi', 'CSS0050458' => 'camsi', 'DCAR_004224' => 'dca', 'DCAR_006147' => 'dca', 'DCAR_006465' => 'dca', 'DCAR_008159' => 'dca', 'DCAR_012164' => 'dca', 'DCAR_019764' => 'dca', 'Dinv05418' => 'din', 'Dinv10839' => 'din', 'Dinv12521' => 'din', 'Dinv13900' => 'din', 'Dinv29426' => 'din', 'Duzib150G0263' => 'dzi', 'Duzib168G1178' => 'dzi', 'Duzib168G1924' => 'dzi', 'Duzib170G0299' => 'dzi', 'Duzib170G0813' => 'dzi', 'Duzib235G1128' => 'dzi', 'Duzib248G1060' => 'dzi', 'ECA232G1910' => 'eca', 'ECA233G4621' => 'eca', 'ECA238G1216' => 'eca', 'ECA238G1784' => 'eca', 'ECA248G1242' => 'eca', 'EL10Ac8g20071' => 'bvu', 'EL10Ac9g21086' => 'bvu', 'EL10Ac9g22407' => 'bvu', 'EL10Ac9g22412' => 'bvu', 'Eucgr.A01119' => 'egr', 'Eucgr.E04043' => 'egr', 'Eucgr.J00428' => 'egr', 'Eucgr.J00958' => 'egr', 'FAN11G3091' => 'fan', 'FAN11G3651' => 'fan', 'FAN16G2566' => 'fan', 'FAN21G3155' => 'fan', 'FAN21G3400' => 'fan', 'FAN21G3543' => 'fan', 'FAN25G0234' => 'fan', 'FAN25G1422' => 'fan', 'FAN25G3392' => 'fan', 'FvH4_3g01940' => 'fve', 'FvH4_3g29870' => 'fve', 'FvH4_3g33680' => 'fve', 'Glyma.09G004200' => 'gma', 'Glyma.11G151288' => 'gma', 'Glyma.11G189100' => 'gma', 'Glyma.12G072500' => 'gma', 'Glyma.12G085500' => 'gma', 'Glyma.12G181800' => 'gma', 'Glyma.12G193000' => 'gma', 'Glyma.13G309300' => 'gma', 'Glyma.13G319000' => 'gma', 'Glyma.17G012600' => 'gma', 'Gohir.A06G148600' => 'ghi', 'Gohir.A07G115800' => 'ghi', 'Gohir.A08G003600' => 'ghi', 'Gohir.A09G093300' => 'ghi', 'Gohir.A09G105400' => 'ghi', 'Gohir.A09G105500' => 'ghi', 'Gohir.D06G154600' => 'ghi', 'Gohir.D07G120200' => 'ghi', 'Gohir.D08G013900' => 'ghi', 'Gohir.D09G093100' => 'ghi', 'Gohir.D09G102200' => 'ghi', 'Gohir.D09G102300' => 'ghi', 'Gorai.001G129400' => 'gra', 'Gorai.004G008200' => 'gra', 'Gorai.006G109800' => 'gra', 'Gorai.006G119500' => 'gra', 'Gorai.006G121300' => 'gra', 'Gorai.010G180700' => 'gra', 'GSVIVG01012716001' => 'vvi', 'GSVIVG01025118001' => 'vvi', 'GSVIVG01030439001' => 'vvi', 'GSVIVG01031397001' => 'vvi', 'HanXRQChr01g0004201' => 'han', 'HanXRQChr02g0054941' => 'han', 'HanXRQChr05g0141811' => 'han', 'HanXRQChr07g0197751' => 'han', 'HanXRQChr11g0346691' => 'han', 'HanXRQChr13g0396971' => 'han', 'HanXRQChr14g0432951' => 'han', 'HanXRQChr14g0452001' => 'han', 'HanXRQChr15g0496681' => 'han', 'HanXRQChr17g0557491' => 'han', 'HanXRQChr17g0557501' => 'han', 'Haze_06809' => 'cav', 'Haze_12852' => 'cav', 'Haze_15850' => 'cav', 'Haze_23446' => 'cav', 'Haze_23942' => 'cav', 'Haze_23943' => 'cav', 'Hma1.2p1_0091F.1_g046450' => 'hma', 'Hma1.2p1_0128F.1_g059910' => 'hma', 'Hma1.2p1_0249F.1_g102260' => 'hma', 'Hma1.2p1_0453F.1_g156190' => 'hma', 'Hma1.2p1_0695F.1_g204380' => 'hma', 'Hma1.2p1_0749F.1_g212650' => 'hma', 'Hma1.2p1_2156F.1_g315420' => 'hma', 'Hma1.2p1_2686F.1_g326940' => 'hma', 'HPP92_006428' => 'vpl', 'HPP92_012069' => 'vpl', 'HPP92_014129' => 'vpl', 'HPP92_014133' => 'vpl', 'HPP92_017315' => 'vpl', 'HPP92_026445' => 'vpl', 'HPP92_026446' => 'vpl', 'Hund00774' => 'sun', 'Hund07682' => 'sun', 'Hund21413' => 'sun', 'Hund23462' => 'sun', 'Hund23463' => 'sun', 'Lalb_Chr03g0027911' => 'lal', 'Lalb_Chr13g0304271' => 'lal', 'Lalb_Chr19g0137471' => 'lal', 'Lalb_Chr22g0350651' => 'lal', 'Lalb_Chr24g0395151' => 'lal', 'Lj1A1231T40' => 'lonja', 'Lj1A221T48' => 'lonja', 'Lj1C924T12' => 'lonja', 'Lj2C993G6' => 'lonja', 'Lj3g0005790' => 'lja', 'Lj3g0015432' => 'lja', 'Lj3g0017722' => 'lja', 'Lj3g0018497' => 'lja', 'Lj4g0025071' => 'lja', 'Lsat_1_v5_gn_1_129680' => 'lsa', 'Lsat_1_v5_gn_2_25321' => 'lsa', 'Lsat_1_v5_gn_2_95461' => 'lsa', 'Lsat_1_v5_gn_4_159620' => 'lsa', 'Lsat_1_v5_gn_6_41301' => 'lsa', 'Lsat_1_v5_gn_6_74660' => 'lsa', 'Lsat_1_v5_gn_7_11520' => 'lsa', 'Lsat_1_v5_gn_9_67680' => 'lsa', 'Manes.04G008300' => 'mes', 'Manes.04G008400' => 'mes', 'Manes.04G026500' => 'mes', 'Manes.10G135300' => 'mes', 'Manes.11G157300' => 'mes', 'Manes.12G074000' => 'mes', 'Manes.16G006200' => 'mes', 'Manes.17G026400' => 'mes', 'Mapoly0024s0086' => 'mpo', 'Mapoly0024s0087' => 'mpo', 'Mapoly0071s0057' => 'mpo', 'Mapoly0204s0012' => 'mpo', 'MBI04_g37681_MAGBIO' => 'mbi', 'MBI05_g17779_MAGBIO' => 'mbi', 'MBI12_g31184_MAGBIO' => 'mbi', 'MBI17_g11083_MAGBIO' => 'mbi', 'MBI18_g03883_MAGBIO' => 'mbi', 'MBI18_g28940_MAGBIO' => 'mbi', 'MCO01G690' => 'mco', 'MD03G1109900' => 'mdo', 'MD03G1134800' => 'mdo', 'MD05G1348000' => 'mdo', 'MD10G1322400' => 'mdo', 'MD11G1123300' => 'mdo', 'MD11G1157600' => 'mdo', 'Medtr2g084875' => 'mtr', 'Medtr2g088130' => 'mtr', 'Medtr4g055310' => 'mtr', 'Medtr4g061070' => 'mtr', 'Medtr4g132250' => 'mtr', 'MELO3C004795.2' => 'cme', 'MELO3C004797.2' => 'cme', 'MELO3C007396.2' => 'cme', 'MELO3C019277.2' => 'cme', 'MELO3C021449.2' => 'cme', 'MELO3C025736.2' => 'cme', 'Migut.D02175' => 'egut', 'Migut.H01573' => 'egut', 'Migut.M01327' => 'egut', 'Migut.N02513' => 'egut', 'MSTRG.14638' => 'ama', 'MSTRG.18632' => 'ama', 'MSTRG.7203' => 'ama', 'Nitab4.5_0000533g0140' => 'nta', 'Nitab4.5_0000888g0150' => 'nta', 'Nitab4.5_0001453g0040' => 'nta', 'Nitab4.5_0002827g0090' => 'nta', 'Nitab4.5_0003082g0040' => 'nta', 'Nitab4.5_0007799g0040' => 'nta', 'Nitab4.5_0008983g0010' => 'nta', 'Nitab4.5_0009017g0020' => 'nta', 'Nn1g02132' => 'nnu', 'Nn1g03492' => 'nnu', 'Nn1g03493' => 'nnu', 'Nn1g03494' => 'nnu', 'Nn1g07164' => 'nnu', 'Nn1g07291' => 'nnu', 'Nn2g10655' => 'nnu', 'Nn2g11652' => 'nnu', 'Nn2g14008' => 'nnu', 'Nn3g17476' => 'nnu', 'Nn3g17477' => 'nnu', 'Nn4g22370' => 'nnu', 'Nn4g25255' => 'nnu', 'Nn5g27755' => 'nnu', 'Nn6g34260' => 'nnu', 'Nn6g35041' => 'nnu', 'Oeu005924.1' => 'oeu', 'Oeu008383.1' => 'oeu', 'Oeu014928.1' => 'oeu', 'Oeu019889.1' => 'oeu', 'Oeu022271.1' => 'oeu', 'Oeu025271.1' => 'oeu', 'Oeu036302.1' => 'oeu', 'Oeu044100.1' => 'oeu', 'Os01g0528300' => 'osa', 'Os03g0286200' => 'osa', 'Os04g0406600' => 'osa', 'Os07g0512000' => 'osa', 'Os07g0694600' => 'osa', 'Os08g0411000' => 'osa', 'Os09g0565700' => 'osa', 'Os09g0566050' => 'osa', 'Os10g0523700' => 'osa', 'Peaxi162Scf00002g00514' => 'pax', 'Peaxi162Scf00047g01817' => 'pax', 'Peaxi162Scf00114g00001' => 'pax', 'Peaxi162Scf00147g00613' => 'pax', 'Peaxi162Scf00389g00425' => 'pax', 'PGR042G1139' => 'pgr', 'PGR042G3273' => 'pgr', 'PGR102G2180' => 'pgr', 'PGR119G0234' => 'pgr', 'PGR119G0668' => 'pgr', 'PGSC0003DMG400007122' => 'stu', 'PGSC0003DMG400016478' => 'stu', 'PGSC0003DMG400025374' => 'stu', 'PGSC0003DMG400026536' => 'stu', 'Phvul.003G079600' => 'pvu', 'Phvul.005G115600' => 'pvu', 'Phvul.005G127100' => 'pvu', 'Phvul.006G149500' => 'pvu', 'Phvul.006G149600' => 'pvu', 'Phvul.011G071800' => 'pvu', 'Phvul.011G090400' => 'pvu', 'Potri.004G013400' => 'ptr', 'Potri.004G188100' => 'ptr', 'Potri.008G195500' => 'ptr', 'Potri.009G148800' => 'ptr', 'Potri.011G004700' => 'ptr', 'Pp3c17_22810' => 'ppa', 'Pp3c18_4480' => 'ppa', 'Pp3c19_13030' => 'ppa', 'Pp3c1_33620' => 'ppa', 'Pp3c2_9380' => 'ppa', 'PRCOL_00001023' => 'pco', 'Prupe.3G216300' => 'ppe', 'Prupe.4G019500' => 'ppe', 'Prupe.6G092500' => 'ppe', 'Prupe.6G119200' => 'ppe', 'Psat0s1945g0080' => 'psa', 'Psat0s4167g0040' => 'psa', 'Psat1g185800' => 'psa', 'Psat4g006440' => 'psa', 'Psat4g006480' => 'psa', 'Psat4g168120' => 'psa', 'Psat5g255680' => 'psa', 'Psat5g261760' => 'psa', 'Psat7g222120' => 'psa', 'PSO063G7252' => 'pso', 'PSO170G4778' => 'pso', 'PSO210G2249' => 'pso', 'PSO339G2411' => 'pso', 'PSO339G2457' => 'pso', 'PSO339G2854' => 'pso', 'PSO339G4288' => 'pso', 'PSO339G4615' => 'pso', 'PSO384G2796' => 'pso', 'PSO384G2940' => 'pso', 'PSO384G4227' => 'pso', 'PSO478G1425' => 'pso', 'PSO541G3863' => 'pso', 'PSO675G0507' => 'pso', 'PSO782G0338' => 'pso', 'PSO832G0644' => 'pso', 'QL01p013664' => 'qlo', 'QL01p036598' => 'qlo', 'QL05p072984' => 'qlo', 'QL08p005768' => 'qlo', 'QL08p032743' => 'qlo', 'QL93p0073_0439' => 'qlo', 'QL93p0073_0444' => 'qlo', 'RcHm_v2.0_Chr5g0002851' => 'rch', 'RcHm_v2.0_Chr5g0055201' => 'rch', 'RcHm_v2.0_Chr5g0061191' => 'rch', 'RcHm_v2.0_Chr7g0203231' => 'rch', 'Rhsim01G0208100' => 'rsi', 'Rhsim01G0208200' => 'rsi', 'Rhsim02G0106500' => 'rsi', 'Rhsim03G0107900' => 'rsi', 'Rhsim06G0163400' => 'rsi', 'Rhsim13G0105200' => 'rsi', 'Sabra04G0006300' => 'sbr', 'Sabra04G0127000' => 'sbr', 'Sabra08G0148700' => 'sbr', 'Sabra09G0117400' => 'sbr', 'SalBow1G3326' => 'sbo', 'SalBow3G3228' => 'sbo', 'SalBow6G1634' => 'sbo', 'SalBow6G3603' => 'sbo', 'SalBow6G5266' => 'sbo', 'SalBow7G2265' => 'sbo', 'SalBow8G0850' => 'sbo', 'SalBow8G2592' => 'sbo', 'Sc05g0009240' => 'sci', 'Sc12g0002300' => 'sci', 'Sc21g0000100' => 'sci', 'Sc21g0004720' => 'sci', 'Sed0002949' => 'sed', 'Sed0004114' => 'sed', 'Sed0004306' => 'sed', 'Sed0006172' => 'sed', 'Sed0008413' => 'sed', 'Sed0013809' => 'sed', 'Sed0019556' => 'sed', 'SEGI_03570' => 'sgi', 'SEGI_07859' => 'sgi', 'SEGI_15042' => 'sgi', 'SEGI_16263' => 'sgi', 'SEGI_16552' => 'sgi', 'SEGI_24331' => 'sgi', 'SEGI_27316' => 'sgi', 'SEGI_29521' => 'sgi', 'SEGI_41342' => 'sgi', 'SGA_v2.0_scaffold27G11617' => 'sas', 'SGA_v2.0_scaffold316G48428' => 'sas', 'SGA_v2.0_scaffold49G18261' => 'sas', 'SGA_v2.0_scaffold7G03831' => 'sas', 'SGA_v2.0_scaffold93G28359' => 'sas', 'SHI02210' => 'shi', 'SHI06028' => 'shi', 'SHI06321' => 'shi', 'SMO111G0012' => 'smo', 'SMO228G0080' => 'smo', 'SMO356G0756' => 'smo', 'Solyc02g080620.3' => 'sly', 'Solyc06g074530.1' => 'sly', 'Solyc11g066890.1' => 'sly', 'Solyc11g072520.3' => 'sly', 'Sopen02g025330' => 'spe', 'Sopen06g031000' => 'spe', 'Sopen09g008240' => 'spe', 'Sopen09g025210' => 'spe', 'Sopen11g026600' => 'spe', 'Sopen11g030170' => 'spe', 'Sp1g10420' => 'spa', 'Sp3g06570' => 'spa', 'Sp4g10660' => 'spa', 'Sp5g16460' => 'spa', 'Sp6g22710' => 'spa', 'TAR365G0112' => 'tar', 'TAR369G0717' => 'tar', 'TAR374G0976' => 'tar', 'TAR623G1128' => 'tar', 'TAR626G1937' => 'tar', 'TAR627G0123' => 'tar', 'TAR628G0305' => 'tar', 'TAR636G1176' => 'tar', 'TAR636G2442' => 'tar', 'THA.LOC104800556' => 'tha', 'THA.LOC104809501' => 'tha', 'THA.LOC104815126' => 'tha', 'THA.LOC104815732' => 'tha', 'THA.LOC104823528' => 'tha', 'Thecc.02G365600' => 'tca', 'Thecc.06G222300' => 'tca', 'Thecc.09G261800' => 'tca', 'Thecc.09G291400' => 'tca', 'Thhalv10003028m.g' => 'esa', 'Thhalv10007886m.g' => 'esa', 'Thhalv10016085m.g' => 'esa', 'Thhalv10016681m.g' => 'esa', 'Thhalv10020951m.g' => 'esa', 'TPR.G15598' => 'tpr', 'TPR.G29305' => 'tpr', 'TPR.G32395' => 'tpr', 'TPR.G36998' => 'tpr', 'TPR.G4227' => 'tpr', 'TWI18G1433' => 'twi', 'TWI31G0755' => 'twi', 'TWI38G0912' => 'twi', 'TWI75G1097' => 'twi', 'TWI75G1619' => 'twi', 'TWI79G1336' => 'twi', 'unitig_0.g943' => 'ugi', 'unitig_0.g944' => 'ugi', 'unitig_22.g6646' => 'ugi', 'unitig_37.g12681' => 'ugi', 'unitig_8.g3290' => 'ugi', 'vmacro03278' => 'vma', 'vmacro12197' => 'vma', 'vmacro14478' => 'vma', 'vmacro15787' => 'vma', 'vmacro15789' => 'vma', 'vmacro15790' => 'vma', 'vmacro15806' => 'vma', 'vmacro22907' => 'vma', 'vmacro22908' => 'vma', 'vmacro22909' => 'vma', 'vmacro23108' => 'vma', 'VMungo0540G0540' => 'vmu', 'VMungo0540G2468' => 'vmu', 'VMungo1080G0390' => 'vmu', 'VMungo1080G1165' => 'vmu', 'VMungo1127G0170' => 'vmu', 'VMungo1127G2099' => 'vmu', 'VMungo1215G3013' => 'vmu', 'Zm00001eb013110' => 'zma', 'Zm00001eb084260' => 'zma', 'Zm00001eb096110' => 'zma', 'Zm00001eb217510' => 'zma', 'Zm00001eb322550' => 'zma', 'Zm00001eb390770' => 'zma', 'Zm00001eb397170' => 'zma', 'Zm00001eb404610' => 'zma', 'Zm00001eb421790' => 'zma' ) $gf_id = 'HOM05D000911' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000911' ) $data_identifier = 'HOM05D000911' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 16, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 5, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 6, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 8, 'nnu' => (int) 16, 'oeu' => (int) 8, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 5, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 16, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421790' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''
include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000911', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27780' => 'bna', 'A03p35380' => 'bna', 'A04p21160' => 'bna', 'A05p40570' => 'bna', 'A06p26900' => 'bna', 'A08p33230' => 'bna', 'A09p65960' => 'bna', 'A10p18290' => 'bna', 'Aa31LG1G12990' => 'aar', 'Aa31LG1G2980' => 'aar', 'Aa31LG4G14320' => 'aar', 'Aa31LG7G11800' => 'aar', 'Aa31sc36G50' => 'aar', 'Aa31sc36G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3721' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5459' => 'aag', 'Actinidia03028' => 'ach', 'Actinidia03753' => 'ach', 'Actinidia04187' => 'ach', 'Actinidia05509' => 'ach', 'Actinidia24180' => 'ach', 'Actinidia26906' => 'ach', 'Actinidia37097' => 'ach', 'Actinidia38249' => 'ach', 'Ah.01g003470' => 'amhyb', 'Ah.01g004580' => 'amhyb', 'Ah.01g014850' => 'amhyb', 'Ah.01g016830' => 'amhyb', 'Ah.14g088000' => 'amhyb', 'AL1G22980' => 'aly', 'AL3G18990' => 'aly', 'AL4G22440' => 'aly', 'AL4G33180' => 'aly', 'AL5G22920' => 'aly', 'AL6G33660' => 'aly', 'AL8G20720' => 'aly', 'Aqoxy1G00935' => 'aox', 'Aqoxy1G02094' => 'aox', 'Aqoxy2G01239' => 'aox', 'Aqoxy4G01870' => 'aox', 'Aqoxy7G00450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.36ZVTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71EM27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5D6C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH3WRE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3NCM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RIM768' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YB5YRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z36GDV' => 'arhy', 'AT1G08250' => 'ath', 'AT1G11790' => 'ath', 'AT2G27820' => 'ath', 'AT3G07630' => 'ath', 'AT3G44720' => 'ath', 'AT5G22630' => 'ath', 'ATR0693G304' => 'atr', 'ATR0794G109' => 'atr', 'ATR0820G120' => 'atr', 'ATR1159G064' => 'atr', 'Atru.chr10.2239' => 'acertr', 'Atru.chr3.3371' => 'acertr', 'Atru.chr6.3202' => 'acertr', 'AUR62006499' => 'cqu', 'AUR62012718' => 'cqu', 'AUR62021938' => 'cqu', 'AUR62023932' => 'cqu', 'AUR62025034' => 'cqu', 'AUR62025035' => 'cqu', 'AUR62038307' => 'cqu', 'AUR62043466' => 'cqu', 'BcaB02g10748' => 'bca', 'BcaB03g13231' => 'bca', 'BcaB03g14689' => 'bca', 'BcaB05g22716' => 'bca', 'BcaB06g28172' => 'bca', 'BcaB08g36413' => 'bca', 'BcaC01g02186' => 'bca', 'BcaC01g04272' => 'bca', 'BcaC02g08080' => 'bca', 'BcaC02g08227' => 'bca', 'BcaC03g13901' => 'bca', 'BcaC04g19593' => 'bca', 'BcaC04g20874' => 'bca', 'BcaC05g29557' => 'bca', 'BcaC06g35505' => 'bca', 'BcaC07g41954' => 'bca', 'BcaC07g41955' => 'bca', 'BcaC07g41956' => 'bca', 'BcaC07g42519' => 'bca', 'BcaC07g42520' => 'bca', 'BcaC07g42523' => 'bca', 'BcaC07g42524' => 'bca', 'BcaC07g42525' => 'bca', 'BcaC08g47480' => 'bca', 'BcaC08g47481' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00530' => 'bna', 'BolC2t07178H' => 'bol', 'BolC3t16567H' => 'bol', 'BolC4t27234H' => 'bol', 'BolC5t29728H' => 'bol', 'BolC5t34622H' => 'bol', 'BolC6t40321H' => 'bol', 'BolC7t42028H' => 'bol', 'BolC8t49125H' => 'bol', 'BolC8t52538H' => 'bol', 'BolC8t52539H' => 'bol', 'BolC9t56681H' => 'bol', 'BolC9t58266H' => 'bol', 'BolSC21t60294H' => 'bol', 'BraA02t05670Z' => 'bra', 'BraA03t12716Z' => 'bra', 'BraA04t17685Z' => 'bra', 'BraA05t22788Z' => 'bra', 'BraA06t24032Z' => 'bra', 'BraA06t25625Z' => 'bra', 'BraA07t27930Z' => 'bra', 'BraA08t35242Z' => 'bra', 'BraA09t38609Z' => 'bra', 'BraA10t43905Z' => 'bra', 'C02p11060' => 'bna', 'C03p42990' => 'bna', 'C03p67310' => 'bna', 'C04p56990' => 'bna', 'C04p58660' => 'bna', 'C05p09890' => 'bna', 'C05p59680' => 'bna', 'C06p19830' => 'bna', 'C06p53040' => 'bna', 'C07p15230' => 'bna', 'C08p50070' => 'bna', 'C08p50090' => 'bna', 'C09p38330' => 'bna', 'C09p53940' => 'bna', 'CAN.G1014.1' => 'can', 'CAN.G644.30' => 'can', 'CAN.G84.47' => 'can', 'CAN.G919.8' => 'can', 'CANSAT54G0113' => 'cansat', 'CANSAT54G1286' => 'cansat', 'CANSAT64G1020' => 'cansat', 'CARHR008080' => 'chi', 'CARHR008090' => 'chi', 'CARHR012130' => 'chi', 'CARHR038390' => 'chi', 'CARHR082330' => 'chi', 'CARHR120520' => 'chi', 'CARHR151470' => 'chi', 'CARHR190950' => 'chi', 'Carub.0001s0760' => 'cru', 'Carub.0001s1146' => 'cru', 'Carub.0003s0721' => 'cru', 'Carub.0004s0858' => 'cru', 'Carub.0005s1040' => 'cru', 'Carub.0006s2035' => 'cru', 'Carub.0015s0005' => 'cru', 'Ca_01607_v3' => 'car', 'Ca_01677_v3' => 'car', 'Ca_06087_v3' => 'car', 'Ca_19238_v3' => 'car', 'Ca_19373_v3' => 'car', 'Ca_21079_v3' => 'car', 'CBR_g54016' => 'cbr', 'CBR_g54018' => 'cbr', 'CBR_g54020' => 'cbr', 'Cc01_g09780' => 'ccan', 'Cc01_g11680' => 'ccan', 'Cc02_g15610' => 'ccan', 'Cc05_g04350' => 'ccan', 'Cc09_g01580' => 'ccan', 'CDE01G0795' => 'cde', 'CDE02G2024' => 'cde', 'CDE02G2260' => 'cde', 'CDE02G4561' => 'cde', 'CDE05G2733' => 'cde', 'CDE05G3422' => 'cde', 'CDE06G2003' => 'cde', 'CDE08G0576' => 'cde', 'CDE09G0048' => 'cde', 'CDE11G0805' => 'cde', 'Cfa003644' => 'cfa', 'Cfa006290' => 'cfa', 'Cfa010080' => 'cfa', 'Cfa011376' => 'cfa', 'Cfa011576' => 'cfa', 'Cfa011577' => 'cfa', 'Cfa014389' => 'cfa', 'Ciclev10006044m.g' => 'ccl', 'Ciclev10006954m.g' => 'ccl', 'Ciclev10015131m.g' => 'ccl', 'Ciclev10015580m.g' => 'ccl', 'Ciclev10028359m.g' => 'ccl', 'Ciclev10028573m.g' => 'ccl', 'CiPaw.03G159300' => 'cil', 'CiPaw.04G115100' => 'cil', 'CiPaw.09G092800' => 'cil', 'CiPaw.10G071800' => 'cil', 'CiPaw.13G105800' => 'cil', 'CiPaw.13G141000' => 'cil', 'CiPaw.14G103400' => 'cil', 'ClCG01G012700' => 'cla', 'ClCG01G012720' => 'cla', 'ClCG01G021920' => 'cla', 'ClCG02G008870' => 'cla', 'ClCG02G020840' => 'cla', 'ClCG02G021930' => 'cla', 'COL.COLO4_19302' => 'col', 'COL.COLO4_25262' => 'col', 'COL.COLO4_31788' => 'col', 'Cpa.g.c34684' => 'cpa', 'Cpa.g.c36520.1' => 'cpa', 'Cpa.g.c45626' => 'cpa', 'Cpa.g.sc121.17' => 'cpa', 'Cpa.g.sc13.22' => 'cpa', 'Cpa.g.sc87.88' => 'cpa', 'Cre06.g261800' => 'cre', 'CsaV3_1G014500' => 'csa', 'CsaV3_1G014510' => 'csa', 'CsaV3_2G034880' => 'csa', 'CsaV3_6G014760' => 'csa', 'CsaV3_6G021500' => 'csa', 'CsaV3_6G048980' => 'csa', 'CSS0002511' => 'camsi', 'CSS0007556' => 'camsi', 'CSS0008532' => 'camsi', 'CSS0009709' => 'camsi', 'CSS0010486' => 'camsi', 'CSS0016768' => 'camsi', 'CSS0023512' => 'camsi', 'CSS0025341' => 'camsi', 'CSS0027999' => 'camsi', 'CSS0028944' => 'camsi', 'CSS0032292' => 'camsi', 'CSS0032464' => 'camsi', 'CSS0037153' => 'camsi', 'CSS0039256' => 'camsi', 'CSS0048392' => 'camsi', 'CSS0050458' => 'camsi', 'DCAR_004224' => 'dca', 'DCAR_006147' => 'dca', 'DCAR_006465' => 'dca', 'DCAR_008159' => 'dca', 'DCAR_012164' => 'dca', 'DCAR_019764' => 'dca', 'Dinv05418' => 'din', 'Dinv10839' => 'din', 'Dinv12521' => 'din', 'Dinv13900' => 'din', 'Dinv29426' => 'din', 'Duzib150G0263' => 'dzi', 'Duzib168G1178' => 'dzi', 'Duzib168G1924' => 'dzi', 'Duzib170G0299' => 'dzi', 'Duzib170G0813' => 'dzi', 'Duzib235G1128' => 'dzi', 'Duzib248G1060' => 'dzi', 'ECA232G1910' => 'eca', 'ECA233G4621' => 'eca', 'ECA238G1216' => 'eca', 'ECA238G1784' => 'eca', 'ECA248G1242' => 'eca', 'EL10Ac8g20071' => 'bvu', 'EL10Ac9g21086' => 'bvu', 'EL10Ac9g22407' => 'bvu', 'EL10Ac9g22412' => 'bvu', 'Eucgr.A01119' => 'egr', 'Eucgr.E04043' => 'egr', 'Eucgr.J00428' => 'egr', 'Eucgr.J00958' => 'egr', 'FAN11G3091' => 'fan', 'FAN11G3651' => 'fan', 'FAN16G2566' => 'fan', 'FAN21G3155' => 'fan', 'FAN21G3400' => 'fan', 'FAN21G3543' => 'fan', 'FAN25G0234' => 'fan', 'FAN25G1422' => 'fan', 'FAN25G3392' => 'fan', 'FvH4_3g01940' => 'fve', 'FvH4_3g29870' => 'fve', 'FvH4_3g33680' => 'fve', 'Glyma.09G004200' => 'gma', 'Glyma.11G151288' => 'gma', 'Glyma.11G189100' => 'gma', 'Glyma.12G072500' => 'gma', 'Glyma.12G085500' => 'gma', 'Glyma.12G181800' => 'gma', 'Glyma.12G193000' => 'gma', 'Glyma.13G309300' => 'gma', 'Glyma.13G319000' => 'gma', 'Glyma.17G012600' => 'gma', 'Gohir.A06G148600' => 'ghi', 'Gohir.A07G115800' => 'ghi', 'Gohir.A08G003600' => 'ghi', 'Gohir.A09G093300' => 'ghi', 'Gohir.A09G105400' => 'ghi', 'Gohir.A09G105500' => 'ghi', 'Gohir.D06G154600' => 'ghi', 'Gohir.D07G120200' => 'ghi', 'Gohir.D08G013900' => 'ghi', 'Gohir.D09G093100' => 'ghi', 'Gohir.D09G102200' => 'ghi', 'Gohir.D09G102300' => 'ghi', 'Gorai.001G129400' => 'gra', 'Gorai.004G008200' => 'gra', 'Gorai.006G109800' => 'gra', 'Gorai.006G119500' => 'gra', 'Gorai.006G121300' => 'gra', 'Gorai.010G180700' => 'gra', 'GSVIVG01012716001' => 'vvi', 'GSVIVG01025118001' => 'vvi', 'GSVIVG01030439001' => 'vvi', 'GSVIVG01031397001' => 'vvi', 'HanXRQChr01g0004201' => 'han', 'HanXRQChr02g0054941' => 'han', 'HanXRQChr05g0141811' => 'han', 'HanXRQChr07g0197751' => 'han', 'HanXRQChr11g0346691' => 'han', 'HanXRQChr13g0396971' => 'han', 'HanXRQChr14g0432951' => 'han', 'HanXRQChr14g0452001' => 'han', 'HanXRQChr15g0496681' => 'han', 'HanXRQChr17g0557491' => 'han', 'HanXRQChr17g0557501' => 'han', 'Haze_06809' => 'cav', 'Haze_12852' => 'cav', 'Haze_15850' => 'cav', 'Haze_23446' => 'cav', 'Haze_23942' => 'cav', 'Haze_23943' => 'cav', 'Hma1.2p1_0091F.1_g046450' => 'hma', 'Hma1.2p1_0128F.1_g059910' => 'hma', 'Hma1.2p1_0249F.1_g102260' => 'hma', 'Hma1.2p1_0453F.1_g156190' => 'hma', 'Hma1.2p1_0695F.1_g204380' => 'hma', 'Hma1.2p1_0749F.1_g212650' => 'hma', 'Hma1.2p1_2156F.1_g315420' => 'hma', 'Hma1.2p1_2686F.1_g326940' => 'hma', 'HPP92_006428' => 'vpl', 'HPP92_012069' => 'vpl', 'HPP92_014129' => 'vpl', 'HPP92_014133' => 'vpl', 'HPP92_017315' => 'vpl', 'HPP92_026445' => 'vpl', 'HPP92_026446' => 'vpl', 'Hund00774' => 'sun', 'Hund07682' => 'sun', 'Hund21413' => 'sun', 'Hund23462' => 'sun', 'Hund23463' => 'sun', 'Lalb_Chr03g0027911' => 'lal', 'Lalb_Chr13g0304271' => 'lal', 'Lalb_Chr19g0137471' => 'lal', 'Lalb_Chr22g0350651' => 'lal', 'Lalb_Chr24g0395151' => 'lal', 'Lj1A1231T40' => 'lonja', 'Lj1A221T48' => 'lonja', 'Lj1C924T12' => 'lonja', 'Lj2C993G6' => 'lonja', 'Lj3g0005790' => 'lja', 'Lj3g0015432' => 'lja', 'Lj3g0017722' => 'lja', 'Lj3g0018497' => 'lja', 'Lj4g0025071' => 'lja', 'Lsat_1_v5_gn_1_129680' => 'lsa', 'Lsat_1_v5_gn_2_25321' => 'lsa', 'Lsat_1_v5_gn_2_95461' => 'lsa', 'Lsat_1_v5_gn_4_159620' => 'lsa', 'Lsat_1_v5_gn_6_41301' => 'lsa', 'Lsat_1_v5_gn_6_74660' => 'lsa', 'Lsat_1_v5_gn_7_11520' => 'lsa', 'Lsat_1_v5_gn_9_67680' => 'lsa', 'Manes.04G008300' => 'mes', 'Manes.04G008400' => 'mes', 'Manes.04G026500' => 'mes', 'Manes.10G135300' => 'mes', 'Manes.11G157300' => 'mes', 'Manes.12G074000' => 'mes', 'Manes.16G006200' => 'mes', 'Manes.17G026400' => 'mes', 'Mapoly0024s0086' => 'mpo', 'Mapoly0024s0087' => 'mpo', 'Mapoly0071s0057' => 'mpo', 'Mapoly0204s0012' => 'mpo', 'MBI04_g37681_MAGBIO' => 'mbi', 'MBI05_g17779_MAGBIO' => 'mbi', 'MBI12_g31184_MAGBIO' => 'mbi', 'MBI17_g11083_MAGBIO' => 'mbi', 'MBI18_g03883_MAGBIO' => 'mbi', 'MBI18_g28940_MAGBIO' => 'mbi', 'MCO01G690' => 'mco', 'MD03G1109900' => 'mdo', 'MD03G1134800' => 'mdo', 'MD05G1348000' => 'mdo', 'MD10G1322400' => 'mdo', 'MD11G1123300' => 'mdo', 'MD11G1157600' => 'mdo', 'Medtr2g084875' => 'mtr', 'Medtr2g088130' => 'mtr', 'Medtr4g055310' => 'mtr', 'Medtr4g061070' => 'mtr', 'Medtr4g132250' => 'mtr', 'MELO3C004795.2' => 'cme', 'MELO3C004797.2' => 'cme', 'MELO3C007396.2' => 'cme', 'MELO3C019277.2' => 'cme', 'MELO3C021449.2' => 'cme', 'MELO3C025736.2' => 'cme', 'Migut.D02175' => 'egut', 'Migut.H01573' => 'egut', 'Migut.M01327' => 'egut', 'Migut.N02513' => 'egut', 'MSTRG.14638' => 'ama', 'MSTRG.18632' => 'ama', 'MSTRG.7203' => 'ama', 'Nitab4.5_0000533g0140' => 'nta', 'Nitab4.5_0000888g0150' => 'nta', 'Nitab4.5_0001453g0040' => 'nta', 'Nitab4.5_0002827g0090' => 'nta', 'Nitab4.5_0003082g0040' => 'nta', 'Nitab4.5_0007799g0040' => 'nta', 'Nitab4.5_0008983g0010' => 'nta', 'Nitab4.5_0009017g0020' => 'nta', 'Nn1g02132' => 'nnu', 'Nn1g03492' => 'nnu', 'Nn1g03493' => 'nnu', 'Nn1g03494' => 'nnu', 'Nn1g07164' => 'nnu', 'Nn1g07291' => 'nnu', 'Nn2g10655' => 'nnu', 'Nn2g11652' => 'nnu', 'Nn2g14008' => 'nnu', 'Nn3g17476' => 'nnu', 'Nn3g17477' => 'nnu', 'Nn4g22370' => 'nnu', 'Nn4g25255' => 'nnu', 'Nn5g27755' => 'nnu', 'Nn6g34260' => 'nnu', 'Nn6g35041' => 'nnu', 'Oeu005924.1' => 'oeu', 'Oeu008383.1' => 'oeu', 'Oeu014928.1' => 'oeu', 'Oeu019889.1' => 'oeu', 'Oeu022271.1' => 'oeu', 'Oeu025271.1' => 'oeu', 'Oeu036302.1' => 'oeu', 'Oeu044100.1' => 'oeu', 'Os01g0528300' => 'osa', 'Os03g0286200' => 'osa', 'Os04g0406600' => 'osa', 'Os07g0512000' => 'osa', 'Os07g0694600' => 'osa', 'Os08g0411000' => 'osa', 'Os09g0565700' => 'osa', 'Os09g0566050' => 'osa', 'Os10g0523700' => 'osa', 'Peaxi162Scf00002g00514' => 'pax', 'Peaxi162Scf00047g01817' => 'pax', 'Peaxi162Scf00114g00001' => 'pax', 'Peaxi162Scf00147g00613' => 'pax', 'Peaxi162Scf00389g00425' => 'pax', 'PGR042G1139' => 'pgr', 'PGR042G3273' => 'pgr', 'PGR102G2180' => 'pgr', 'PGR119G0234' => 'pgr', 'PGR119G0668' => 'pgr', 'PGSC0003DMG400007122' => 'stu', 'PGSC0003DMG400016478' => 'stu', 'PGSC0003DMG400025374' => 'stu', 'PGSC0003DMG400026536' => 'stu', 'Phvul.003G079600' => 'pvu', 'Phvul.005G115600' => 'pvu', 'Phvul.005G127100' => 'pvu', 'Phvul.006G149500' => 'pvu', 'Phvul.006G149600' => 'pvu', 'Phvul.011G071800' => 'pvu', 'Phvul.011G090400' => 'pvu', 'Potri.004G013400' => 'ptr', 'Potri.004G188100' => 'ptr', 'Potri.008G195500' => 'ptr', 'Potri.009G148800' => 'ptr', 'Potri.011G004700' => 'ptr', 'Pp3c17_22810' => 'ppa', 'Pp3c18_4480' => 'ppa', 'Pp3c19_13030' => 'ppa', 'Pp3c1_33620' => 'ppa', 'Pp3c2_9380' => 'ppa', 'PRCOL_00001023' => 'pco', 'Prupe.3G216300' => 'ppe', 'Prupe.4G019500' => 'ppe', 'Prupe.6G092500' => 'ppe', 'Prupe.6G119200' => 'ppe', 'Psat0s1945g0080' => 'psa', 'Psat0s4167g0040' => 'psa', 'Psat1g185800' => 'psa', 'Psat4g006440' => 'psa', 'Psat4g006480' => 'psa', 'Psat4g168120' => 'psa', 'Psat5g255680' => 'psa', 'Psat5g261760' => 'psa', 'Psat7g222120' => 'psa', 'PSO063G7252' => 'pso', 'PSO170G4778' => 'pso', 'PSO210G2249' => 'pso', 'PSO339G2411' => 'pso', 'PSO339G2457' => 'pso', 'PSO339G2854' => 'pso', 'PSO339G4288' => 'pso', 'PSO339G4615' => 'pso', 'PSO384G2796' => 'pso', 'PSO384G2940' => 'pso', 'PSO384G4227' => 'pso', 'PSO478G1425' => 'pso', 'PSO541G3863' => 'pso', 'PSO675G0507' => 'pso', 'PSO782G0338' => 'pso', 'PSO832G0644' => 'pso', 'QL01p013664' => 'qlo', 'QL01p036598' => 'qlo', 'QL05p072984' => 'qlo', 'QL08p005768' => 'qlo', 'QL08p032743' => 'qlo', 'QL93p0073_0439' => 'qlo', 'QL93p0073_0444' => 'qlo', 'RcHm_v2.0_Chr5g0002851' => 'rch', 'RcHm_v2.0_Chr5g0055201' => 'rch', 'RcHm_v2.0_Chr5g0061191' => 'rch', 'RcHm_v2.0_Chr7g0203231' => 'rch', 'Rhsim01G0208100' => 'rsi', 'Rhsim01G0208200' => 'rsi', 'Rhsim02G0106500' => 'rsi', 'Rhsim03G0107900' => 'rsi', 'Rhsim06G0163400' => 'rsi', 'Rhsim13G0105200' => 'rsi', 'Sabra04G0006300' => 'sbr', 'Sabra04G0127000' => 'sbr', 'Sabra08G0148700' => 'sbr', 'Sabra09G0117400' => 'sbr', 'SalBow1G3326' => 'sbo', 'SalBow3G3228' => 'sbo', 'SalBow6G1634' => 'sbo', 'SalBow6G3603' => 'sbo', 'SalBow6G5266' => 'sbo', 'SalBow7G2265' => 'sbo', 'SalBow8G0850' => 'sbo', 'SalBow8G2592' => 'sbo', 'Sc05g0009240' => 'sci', 'Sc12g0002300' => 'sci', 'Sc21g0000100' => 'sci', 'Sc21g0004720' => 'sci', 'Sed0002949' => 'sed', 'Sed0004114' => 'sed', 'Sed0004306' => 'sed', 'Sed0006172' => 'sed', 'Sed0008413' => 'sed', 'Sed0013809' => 'sed', 'Sed0019556' => 'sed', 'SEGI_03570' => 'sgi', 'SEGI_07859' => 'sgi', 'SEGI_15042' => 'sgi', 'SEGI_16263' => 'sgi', 'SEGI_16552' => 'sgi', 'SEGI_24331' => 'sgi', 'SEGI_27316' => 'sgi', 'SEGI_29521' => 'sgi', 'SEGI_41342' => 'sgi', 'SGA_v2.0_scaffold27G11617' => 'sas', 'SGA_v2.0_scaffold316G48428' => 'sas', 'SGA_v2.0_scaffold49G18261' => 'sas', 'SGA_v2.0_scaffold7G03831' => 'sas', 'SGA_v2.0_scaffold93G28359' => 'sas', 'SHI02210' => 'shi', 'SHI06028' => 'shi', 'SHI06321' => 'shi', 'SMO111G0012' => 'smo', 'SMO228G0080' => 'smo', 'SMO356G0756' => 'smo', 'Solyc02g080620.3' => 'sly', 'Solyc06g074530.1' => 'sly', 'Solyc11g066890.1' => 'sly', 'Solyc11g072520.3' => 'sly', 'Sopen02g025330' => 'spe', 'Sopen06g031000' => 'spe', 'Sopen09g008240' => 'spe', 'Sopen09g025210' => 'spe', 'Sopen11g026600' => 'spe', 'Sopen11g030170' => 'spe', 'Sp1g10420' => 'spa', 'Sp3g06570' => 'spa', 'Sp4g10660' => 'spa', 'Sp5g16460' => 'spa', 'Sp6g22710' => 'spa', 'TAR365G0112' => 'tar', 'TAR369G0717' => 'tar', 'TAR374G0976' => 'tar', 'TAR623G1128' => 'tar', 'TAR626G1937' => 'tar', 'TAR627G0123' => 'tar', 'TAR628G0305' => 'tar', 'TAR636G1176' => 'tar', 'TAR636G2442' => 'tar', 'THA.LOC104800556' => 'tha', 'THA.LOC104809501' => 'tha', 'THA.LOC104815126' => 'tha', 'THA.LOC104815732' => 'tha', 'THA.LOC104823528' => 'tha', 'Thecc.02G365600' => 'tca', 'Thecc.06G222300' => 'tca', 'Thecc.09G261800' => 'tca', 'Thecc.09G291400' => 'tca', 'Thhalv10003028m.g' => 'esa', 'Thhalv10007886m.g' => 'esa', 'Thhalv10016085m.g' => 'esa', 'Thhalv10016681m.g' => 'esa', 'Thhalv10020951m.g' => 'esa', 'TPR.G15598' => 'tpr', 'TPR.G29305' => 'tpr', 'TPR.G32395' => 'tpr', 'TPR.G36998' => 'tpr', 'TPR.G4227' => 'tpr', 'TWI18G1433' => 'twi', 'TWI31G0755' => 'twi', 'TWI38G0912' => 'twi', 'TWI75G1097' => 'twi', 'TWI75G1619' => 'twi', 'TWI79G1336' => 'twi', 'unitig_0.g943' => 'ugi', 'unitig_0.g944' => 'ugi', 'unitig_22.g6646' => 'ugi', 'unitig_37.g12681' => 'ugi', 'unitig_8.g3290' => 'ugi', 'vmacro03278' => 'vma', 'vmacro12197' => 'vma', 'vmacro14478' => 'vma', 'vmacro15787' => 'vma', 'vmacro15789' => 'vma', 'vmacro15790' => 'vma', 'vmacro15806' => 'vma', 'vmacro22907' => 'vma', 'vmacro22908' => 'vma', 'vmacro22909' => 'vma', 'vmacro23108' => 'vma', 'VMungo0540G0540' => 'vmu', 'VMungo0540G2468' => 'vmu', 'VMungo1080G0390' => 'vmu', 'VMungo1080G1165' => 'vmu', 'VMungo1127G0170' => 'vmu', 'VMungo1127G2099' => 'vmu', 'VMungo1215G3013' => 'vmu', 'Zm00001eb013110' => 'zma', 'Zm00001eb084260' => 'zma', 'Zm00001eb096110' => 'zma', 'Zm00001eb217510' => 'zma', 'Zm00001eb322550' => 'zma', 'Zm00001eb390770' => 'zma', 'Zm00001eb397170' => 'zma', 'Zm00001eb404610' => 'zma', 'Zm00001eb421790' => 'zma' ), 'gf_id' => 'HOM05D000911', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000911' ), 'data_identifier' => 'HOM05D000911', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000911', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27780' => 'bna', 'A03p35380' => 'bna', 'A04p21160' => 'bna', 'A05p40570' => 'bna', 'A06p26900' => 'bna', 'A08p33230' => 'bna', 'A09p65960' => 'bna', 'A10p18290' => 'bna', 'Aa31LG1G12990' => 'aar', 'Aa31LG1G2980' => 'aar', 'Aa31LG4G14320' => 'aar', 'Aa31LG7G11800' => 'aar', 'Aa31sc36G50' => 'aar', 'Aa31sc36G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3721' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5459' => 'aag', 'Actinidia03028' => 'ach', 'Actinidia03753' => 'ach', 'Actinidia04187' => 'ach', 'Actinidia05509' => 'ach', 'Actinidia24180' => 'ach', 'Actinidia26906' => 'ach', 'Actinidia37097' => 'ach', 'Actinidia38249' => 'ach', 'Ah.01g003470' => 'amhyb', 'Ah.01g004580' => 'amhyb', 'Ah.01g014850' => 'amhyb', 'Ah.01g016830' => 'amhyb', 'Ah.14g088000' => 'amhyb', 'AL1G22980' => 'aly', 'AL3G18990' => 'aly', 'AL4G22440' => 'aly', 'AL4G33180' => 'aly', 'AL5G22920' => 'aly', 'AL6G33660' => 'aly', 'AL8G20720' => 'aly', 'Aqoxy1G00935' => 'aox', 'Aqoxy1G02094' => 'aox', 'Aqoxy2G01239' => 'aox', 'Aqoxy4G01870' => 'aox', 'Aqoxy7G00450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.36ZVTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71EM27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5D6C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH3WRE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3NCM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RIM768' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YB5YRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z36GDV' => 'arhy', 'AT1G08250' => 'ath', 'AT1G11790' => 'ath', 'AT2G27820' => 'ath', 'AT3G07630' => 'ath', 'AT3G44720' => 'ath', 'AT5G22630' => 'ath', 'ATR0693G304' => 'atr', 'ATR0794G109' => 'atr', 'ATR0820G120' => 'atr', 'ATR1159G064' => 'atr', 'Atru.chr10.2239' => 'acertr', 'Atru.chr3.3371' => 'acertr', 'Atru.chr6.3202' => 'acertr', 'AUR62006499' => 'cqu', 'AUR62012718' => 'cqu', 'AUR62021938' => 'cqu', 'AUR62023932' => 'cqu', 'AUR62025034' => 'cqu', 'AUR62025035' => 'cqu', 'AUR62038307' => 'cqu', 'AUR62043466' => 'cqu', 'BcaB02g10748' => 'bca', 'BcaB03g13231' => 'bca', 'BcaB03g14689' => 'bca', 'BcaB05g22716' => 'bca', 'BcaB06g28172' => 'bca', 'BcaB08g36413' => 'bca', 'BcaC01g02186' => 'bca', 'BcaC01g04272' => 'bca', 'BcaC02g08080' => 'bca', 'BcaC02g08227' => 'bca', 'BcaC03g13901' => 'bca', 'BcaC04g19593' => 'bca', 'BcaC04g20874' => 'bca', 'BcaC05g29557' => 'bca', 'BcaC06g35505' => 'bca', 'BcaC07g41954' => 'bca', 'BcaC07g41955' => 'bca', 'BcaC07g41956' => 'bca', 'BcaC07g42519' => 'bca', 'BcaC07g42520' => 'bca', 'BcaC07g42523' => 'bca', 'BcaC07g42524' => 'bca', 'BcaC07g42525' => 'bca', 'BcaC08g47480' => 'bca', 'BcaC08g47481' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00530' => 'bna', 'BolC2t07178H' => 'bol', 'BolC3t16567H' => 'bol', 'BolC4t27234H' => 'bol', 'BolC5t29728H' => 'bol', 'BolC5t34622H' => 'bol', 'BolC6t40321H' => 'bol', 'BolC7t42028H' => 'bol', 'BolC8t49125H' => 'bol', 'BolC8t52538H' => 'bol', 'BolC8t52539H' => 'bol', 'BolC9t56681H' => 'bol', 'BolC9t58266H' => 'bol', 'BolSC21t60294H' => 'bol', 'BraA02t05670Z' => 'bra', 'BraA03t12716Z' => 'bra', 'BraA04t17685Z' => 'bra', 'BraA05t22788Z' => 'bra', 'BraA06t24032Z' => 'bra', 'BraA06t25625Z' => 'bra', 'BraA07t27930Z' => 'bra', 'BraA08t35242Z' => 'bra', 'BraA09t38609Z' => 'bra', 'BraA10t43905Z' => 'bra', 'C02p11060' => 'bna', 'C03p42990' => 'bna', 'C03p67310' => 'bna', 'C04p56990' => 'bna', 'C04p58660' => 'bna', 'C05p09890' => 'bna', 'C05p59680' => 'bna', 'C06p19830' => 'bna', 'C06p53040' => 'bna', 'C07p15230' => 'bna', 'C08p50070' => 'bna', 'C08p50090' => 'bna', 'C09p38330' => 'bna', 'C09p53940' => 'bna', 'CAN.G1014.1' => 'can', 'CAN.G644.30' => 'can', 'CAN.G84.47' => 'can', 'CAN.G919.8' => 'can', 'CANSAT54G0113' => 'cansat', 'CANSAT54G1286' => 'cansat', 'CANSAT64G1020' => 'cansat', 'CARHR008080' => 'chi', 'CARHR008090' => 'chi', 'CARHR012130' => 'chi', 'CARHR038390' => 'chi', 'CARHR082330' => 'chi', 'CARHR120520' => 'chi', 'CARHR151470' => 'chi', 'CARHR190950' => 'chi', 'Carub.0001s0760' => 'cru', 'Carub.0001s1146' => 'cru', 'Carub.0003s0721' => 'cru', 'Carub.0004s0858' => 'cru', 'Carub.0005s1040' => 'cru', 'Carub.0006s2035' => 'cru', 'Carub.0015s0005' => 'cru', 'Ca_01607_v3' => 'car', 'Ca_01677_v3' => 'car', 'Ca_06087_v3' => 'car', 'Ca_19238_v3' => 'car', 'Ca_19373_v3' => 'car', 'Ca_21079_v3' => 'car', 'CBR_g54016' => 'cbr', 'CBR_g54018' => 'cbr', 'CBR_g54020' => 'cbr', 'Cc01_g09780' => 'ccan', 'Cc01_g11680' => 'ccan', 'Cc02_g15610' => 'ccan', 'Cc05_g04350' => 'ccan', 'Cc09_g01580' => 'ccan', 'CDE01G0795' => 'cde', 'CDE02G2024' => 'cde', 'CDE02G2260' => 'cde', 'CDE02G4561' => 'cde', 'CDE05G2733' => 'cde', 'CDE05G3422' => 'cde', 'CDE06G2003' => 'cde', 'CDE08G0576' => 'cde', 'CDE09G0048' => 'cde', 'CDE11G0805' => 'cde', 'Cfa003644' => 'cfa', 'Cfa006290' => 'cfa', 'Cfa010080' => 'cfa', 'Cfa011376' => 'cfa', 'Cfa011576' => 'cfa', 'Cfa011577' => 'cfa', 'Cfa014389' => 'cfa', 'Ciclev10006044m.g' => 'ccl', 'Ciclev10006954m.g' => 'ccl', 'Ciclev10015131m.g' => 'ccl', 'Ciclev10015580m.g' => 'ccl', 'Ciclev10028359m.g' => 'ccl', 'Ciclev10028573m.g' => 'ccl', 'CiPaw.03G159300' => 'cil', 'CiPaw.04G115100' => 'cil', 'CiPaw.09G092800' => 'cil', 'CiPaw.10G071800' => 'cil', 'CiPaw.13G105800' => 'cil', 'CiPaw.13G141000' => 'cil', 'CiPaw.14G103400' => 'cil', 'ClCG01G012700' => 'cla', 'ClCG01G012720' => 'cla', 'ClCG01G021920' => 'cla', 'ClCG02G008870' => 'cla', 'ClCG02G020840' => 'cla', 'ClCG02G021930' => 'cla', 'COL.COLO4_19302' => 'col', 'COL.COLO4_25262' => 'col', 'COL.COLO4_31788' => 'col', 'Cpa.g.c34684' => 'cpa', 'Cpa.g.c36520.1' => 'cpa', 'Cpa.g.c45626' => 'cpa', 'Cpa.g.sc121.17' => 'cpa', 'Cpa.g.sc13.22' => 'cpa', 'Cpa.g.sc87.88' => 'cpa', 'Cre06.g261800' => 'cre', 'CsaV3_1G014500' => 'csa', 'CsaV3_1G014510' => 'csa', 'CsaV3_2G034880' => 'csa', 'CsaV3_6G014760' => 'csa', 'CsaV3_6G021500' => 'csa', 'CsaV3_6G048980' => 'csa', 'CSS0002511' => 'camsi', 'CSS0007556' => 'camsi', 'CSS0008532' => 'camsi', 'CSS0009709' => 'camsi', 'CSS0010486' => 'camsi', 'CSS0016768' => 'camsi', 'CSS0023512' => 'camsi', 'CSS0025341' => 'camsi', 'CSS0027999' => 'camsi', 'CSS0028944' => 'camsi', 'CSS0032292' => 'camsi', 'CSS0032464' => 'camsi', 'CSS0037153' => 'camsi', 'CSS0039256' => 'camsi', 'CSS0048392' => 'camsi', 'CSS0050458' => 'camsi', 'DCAR_004224' => 'dca', 'DCAR_006147' => 'dca', 'DCAR_006465' => 'dca', 'DCAR_008159' => 'dca', 'DCAR_012164' => 'dca', 'DCAR_019764' => 'dca', 'Dinv05418' => 'din', 'Dinv10839' => 'din', 'Dinv12521' => 'din', 'Dinv13900' => 'din', 'Dinv29426' => 'din', 'Duzib150G0263' => 'dzi', 'Duzib168G1178' => 'dzi', 'Duzib168G1924' => 'dzi', 'Duzib170G0299' => 'dzi', 'Duzib170G0813' => 'dzi', 'Duzib235G1128' => 'dzi', 'Duzib248G1060' => 'dzi', 'ECA232G1910' => 'eca', 'ECA233G4621' => 'eca', 'ECA238G1216' => 'eca', 'ECA238G1784' => 'eca', 'ECA248G1242' => 'eca', 'EL10Ac8g20071' => 'bvu', 'EL10Ac9g21086' => 'bvu', 'EL10Ac9g22407' => 'bvu', 'EL10Ac9g22412' => 'bvu', 'Eucgr.A01119' => 'egr', 'Eucgr.E04043' => 'egr', 'Eucgr.J00428' => 'egr', 'Eucgr.J00958' => 'egr', 'FAN11G3091' => 'fan', 'FAN11G3651' => 'fan', 'FAN16G2566' => 'fan', 'FAN21G3155' => 'fan', 'FAN21G3400' => 'fan', 'FAN21G3543' => 'fan', 'FAN25G0234' => 'fan', 'FAN25G1422' => 'fan', 'FAN25G3392' => 'fan', 'FvH4_3g01940' => 'fve', 'FvH4_3g29870' => 'fve', 'FvH4_3g33680' => 'fve', 'Glyma.09G004200' => 'gma', 'Glyma.11G151288' => 'gma', 'Glyma.11G189100' => 'gma', 'Glyma.12G072500' => 'gma', 'Glyma.12G085500' => 'gma', 'Glyma.12G181800' => 'gma', 'Glyma.12G193000' => 'gma', 'Glyma.13G309300' => 'gma', 'Glyma.13G319000' => 'gma', 'Glyma.17G012600' => 'gma', 'Gohir.A06G148600' => 'ghi', 'Gohir.A07G115800' => 'ghi', 'Gohir.A08G003600' => 'ghi', 'Gohir.A09G093300' => 'ghi', 'Gohir.A09G105400' => 'ghi', 'Gohir.A09G105500' => 'ghi', 'Gohir.D06G154600' => 'ghi', 'Gohir.D07G120200' => 'ghi', 'Gohir.D08G013900' => 'ghi', 'Gohir.D09G093100' => 'ghi', 'Gohir.D09G102200' => 'ghi', 'Gohir.D09G102300' => 'ghi', 'Gorai.001G129400' => 'gra', 'Gorai.004G008200' => 'gra', 'Gorai.006G109800' => 'gra', 'Gorai.006G119500' => 'gra', 'Gorai.006G121300' => 'gra', 'Gorai.010G180700' => 'gra', 'GSVIVG01012716001' => 'vvi', 'GSVIVG01025118001' => 'vvi', 'GSVIVG01030439001' => 'vvi', 'GSVIVG01031397001' => 'vvi', 'HanXRQChr01g0004201' => 'han', 'HanXRQChr02g0054941' => 'han', 'HanXRQChr05g0141811' => 'han', 'HanXRQChr07g0197751' => 'han', 'HanXRQChr11g0346691' => 'han', 'HanXRQChr13g0396971' => 'han', 'HanXRQChr14g0432951' => 'han', 'HanXRQChr14g0452001' => 'han', 'HanXRQChr15g0496681' => 'han', 'HanXRQChr17g0557491' => 'han', 'HanXRQChr17g0557501' => 'han', 'Haze_06809' => 'cav', 'Haze_12852' => 'cav', 'Haze_15850' => 'cav', 'Haze_23446' => 'cav', 'Haze_23942' => 'cav', 'Haze_23943' => 'cav', 'Hma1.2p1_0091F.1_g046450' => 'hma', 'Hma1.2p1_0128F.1_g059910' => 'hma', 'Hma1.2p1_0249F.1_g102260' => 'hma', 'Hma1.2p1_0453F.1_g156190' => 'hma', 'Hma1.2p1_0695F.1_g204380' => 'hma', 'Hma1.2p1_0749F.1_g212650' => 'hma', 'Hma1.2p1_2156F.1_g315420' => 'hma', 'Hma1.2p1_2686F.1_g326940' => 'hma', 'HPP92_006428' => 'vpl', 'HPP92_012069' => 'vpl', 'HPP92_014129' => 'vpl', 'HPP92_014133' => 'vpl', 'HPP92_017315' => 'vpl', 'HPP92_026445' => 'vpl', 'HPP92_026446' => 'vpl', 'Hund00774' => 'sun', 'Hund07682' => 'sun', 'Hund21413' => 'sun', 'Hund23462' => 'sun', 'Hund23463' => 'sun', 'Lalb_Chr03g0027911' => 'lal', 'Lalb_Chr13g0304271' => 'lal', 'Lalb_Chr19g0137471' => 'lal', 'Lalb_Chr22g0350651' => 'lal', 'Lalb_Chr24g0395151' => 'lal', 'Lj1A1231T40' => 'lonja', 'Lj1A221T48' => 'lonja', 'Lj1C924T12' => 'lonja', 'Lj2C993G6' => 'lonja', 'Lj3g0005790' => 'lja', 'Lj3g0015432' => 'lja', 'Lj3g0017722' => 'lja', 'Lj3g0018497' => 'lja', 'Lj4g0025071' => 'lja', 'Lsat_1_v5_gn_1_129680' => 'lsa', 'Lsat_1_v5_gn_2_25321' => 'lsa', 'Lsat_1_v5_gn_2_95461' => 'lsa', 'Lsat_1_v5_gn_4_159620' => 'lsa', 'Lsat_1_v5_gn_6_41301' => 'lsa', 'Lsat_1_v5_gn_6_74660' => 'lsa', 'Lsat_1_v5_gn_7_11520' => 'lsa', 'Lsat_1_v5_gn_9_67680' => 'lsa', 'Manes.04G008300' => 'mes', 'Manes.04G008400' => 'mes', 'Manes.04G026500' => 'mes', 'Manes.10G135300' => 'mes', 'Manes.11G157300' => 'mes', 'Manes.12G074000' => 'mes', 'Manes.16G006200' => 'mes', 'Manes.17G026400' => 'mes', 'Mapoly0024s0086' => 'mpo', 'Mapoly0024s0087' => 'mpo', 'Mapoly0071s0057' => 'mpo', 'Mapoly0204s0012' => 'mpo', 'MBI04_g37681_MAGBIO' => 'mbi', 'MBI05_g17779_MAGBIO' => 'mbi', 'MBI12_g31184_MAGBIO' => 'mbi', 'MBI17_g11083_MAGBIO' => 'mbi', 'MBI18_g03883_MAGBIO' => 'mbi', 'MBI18_g28940_MAGBIO' => 'mbi', 'MCO01G690' => 'mco', 'MD03G1109900' => 'mdo', 'MD03G1134800' => 'mdo', 'MD05G1348000' => 'mdo', 'MD10G1322400' => 'mdo', 'MD11G1123300' => 'mdo', 'MD11G1157600' => 'mdo', 'Medtr2g084875' => 'mtr', 'Medtr2g088130' => 'mtr', 'Medtr4g055310' => 'mtr', 'Medtr4g061070' => 'mtr', 'Medtr4g132250' => 'mtr', 'MELO3C004795.2' => 'cme', 'MELO3C004797.2' => 'cme', 'MELO3C007396.2' => 'cme', 'MELO3C019277.2' => 'cme', 'MELO3C021449.2' => 'cme', 'MELO3C025736.2' => 'cme', 'Migut.D02175' => 'egut', 'Migut.H01573' => 'egut', 'Migut.M01327' => 'egut', 'Migut.N02513' => 'egut', 'MSTRG.14638' => 'ama', 'MSTRG.18632' => 'ama', 'MSTRG.7203' => 'ama', 'Nitab4.5_0000533g0140' => 'nta', 'Nitab4.5_0000888g0150' => 'nta', 'Nitab4.5_0001453g0040' => 'nta', 'Nitab4.5_0002827g0090' => 'nta', 'Nitab4.5_0003082g0040' => 'nta', 'Nitab4.5_0007799g0040' => 'nta', 'Nitab4.5_0008983g0010' => 'nta', 'Nitab4.5_0009017g0020' => 'nta', 'Nn1g02132' => 'nnu', 'Nn1g03492' => 'nnu', 'Nn1g03493' => 'nnu', 'Nn1g03494' => 'nnu', 'Nn1g07164' => 'nnu', 'Nn1g07291' => 'nnu', 'Nn2g10655' => 'nnu', 'Nn2g11652' => 'nnu', 'Nn2g14008' => 'nnu', 'Nn3g17476' => 'nnu', 'Nn3g17477' => 'nnu', 'Nn4g22370' => 'nnu', 'Nn4g25255' => 'nnu', 'Nn5g27755' => 'nnu', 'Nn6g34260' => 'nnu', 'Nn6g35041' => 'nnu', 'Oeu005924.1' => 'oeu', 'Oeu008383.1' => 'oeu', 'Oeu014928.1' => 'oeu', 'Oeu019889.1' => 'oeu', 'Oeu022271.1' => 'oeu', 'Oeu025271.1' => 'oeu', 'Oeu036302.1' => 'oeu', 'Oeu044100.1' => 'oeu', 'Os01g0528300' => 'osa', 'Os03g0286200' => 'osa', 'Os04g0406600' => 'osa', 'Os07g0512000' => 'osa', 'Os07g0694600' => 'osa', 'Os08g0411000' => 'osa', 'Os09g0565700' => 'osa', 'Os09g0566050' => 'osa', 'Os10g0523700' => 'osa', 'Peaxi162Scf00002g00514' => 'pax', 'Peaxi162Scf00047g01817' => 'pax', 'Peaxi162Scf00114g00001' => 'pax', 'Peaxi162Scf00147g00613' => 'pax', 'Peaxi162Scf00389g00425' => 'pax', 'PGR042G1139' => 'pgr', 'PGR042G3273' => 'pgr', 'PGR102G2180' => 'pgr', 'PGR119G0234' => 'pgr', 'PGR119G0668' => 'pgr', 'PGSC0003DMG400007122' => 'stu', 'PGSC0003DMG400016478' => 'stu', 'PGSC0003DMG400025374' => 'stu', 'PGSC0003DMG400026536' => 'stu', 'Phvul.003G079600' => 'pvu', 'Phvul.005G115600' => 'pvu', 'Phvul.005G127100' => 'pvu', 'Phvul.006G149500' => 'pvu', 'Phvul.006G149600' => 'pvu', 'Phvul.011G071800' => 'pvu', 'Phvul.011G090400' => 'pvu', 'Potri.004G013400' => 'ptr', 'Potri.004G188100' => 'ptr', 'Potri.008G195500' => 'ptr', 'Potri.009G148800' => 'ptr', 'Potri.011G004700' => 'ptr', 'Pp3c17_22810' => 'ppa', 'Pp3c18_4480' => 'ppa', 'Pp3c19_13030' => 'ppa', 'Pp3c1_33620' => 'ppa', 'Pp3c2_9380' => 'ppa', 'PRCOL_00001023' => 'pco', 'Prupe.3G216300' => 'ppe', 'Prupe.4G019500' => 'ppe', 'Prupe.6G092500' => 'ppe', 'Prupe.6G119200' => 'ppe', 'Psat0s1945g0080' => 'psa', 'Psat0s4167g0040' => 'psa', 'Psat1g185800' => 'psa', 'Psat4g006440' => 'psa', 'Psat4g006480' => 'psa', 'Psat4g168120' => 'psa', 'Psat5g255680' => 'psa', 'Psat5g261760' => 'psa', 'Psat7g222120' => 'psa', 'PSO063G7252' => 'pso', 'PSO170G4778' => 'pso', 'PSO210G2249' => 'pso', 'PSO339G2411' => 'pso', 'PSO339G2457' => 'pso', 'PSO339G2854' => 'pso', 'PSO339G4288' => 'pso', 'PSO339G4615' => 'pso', 'PSO384G2796' => 'pso', 'PSO384G2940' => 'pso', 'PSO384G4227' => 'pso', 'PSO478G1425' => 'pso', 'PSO541G3863' => 'pso', 'PSO675G0507' => 'pso', 'PSO782G0338' => 'pso', 'PSO832G0644' => 'pso', 'QL01p013664' => 'qlo', 'QL01p036598' => 'qlo', 'QL05p072984' => 'qlo', 'QL08p005768' => 'qlo', 'QL08p032743' => 'qlo', 'QL93p0073_0439' => 'qlo', 'QL93p0073_0444' => 'qlo', 'RcHm_v2.0_Chr5g0002851' => 'rch', 'RcHm_v2.0_Chr5g0055201' => 'rch', 'RcHm_v2.0_Chr5g0061191' => 'rch', 'RcHm_v2.0_Chr7g0203231' => 'rch', 'Rhsim01G0208100' => 'rsi', 'Rhsim01G0208200' => 'rsi', 'Rhsim02G0106500' => 'rsi', 'Rhsim03G0107900' => 'rsi', 'Rhsim06G0163400' => 'rsi', 'Rhsim13G0105200' => 'rsi', 'Sabra04G0006300' => 'sbr', 'Sabra04G0127000' => 'sbr', 'Sabra08G0148700' => 'sbr', 'Sabra09G0117400' => 'sbr', 'SalBow1G3326' => 'sbo', 'SalBow3G3228' => 'sbo', 'SalBow6G1634' => 'sbo', 'SalBow6G3603' => 'sbo', 'SalBow6G5266' => 'sbo', 'SalBow7G2265' => 'sbo', 'SalBow8G0850' => 'sbo', 'SalBow8G2592' => 'sbo', 'Sc05g0009240' => 'sci', 'Sc12g0002300' => 'sci', 'Sc21g0000100' => 'sci', 'Sc21g0004720' => 'sci', 'Sed0002949' => 'sed', 'Sed0004114' => 'sed', 'Sed0004306' => 'sed', 'Sed0006172' => 'sed', 'Sed0008413' => 'sed', 'Sed0013809' => 'sed', 'Sed0019556' => 'sed', 'SEGI_03570' => 'sgi', 'SEGI_07859' => 'sgi', 'SEGI_15042' => 'sgi', 'SEGI_16263' => 'sgi', 'SEGI_16552' => 'sgi', 'SEGI_24331' => 'sgi', 'SEGI_27316' => 'sgi', 'SEGI_29521' => 'sgi', 'SEGI_41342' => 'sgi', 'SGA_v2.0_scaffold27G11617' => 'sas', 'SGA_v2.0_scaffold316G48428' => 'sas', 'SGA_v2.0_scaffold49G18261' => 'sas', 'SGA_v2.0_scaffold7G03831' => 'sas', 'SGA_v2.0_scaffold93G28359' => 'sas', 'SHI02210' => 'shi', 'SHI06028' => 'shi', 'SHI06321' => 'shi', 'SMO111G0012' => 'smo', 'SMO228G0080' => 'smo', 'SMO356G0756' => 'smo', 'Solyc02g080620.3' => 'sly', 'Solyc06g074530.1' => 'sly', 'Solyc11g066890.1' => 'sly', 'Solyc11g072520.3' => 'sly', 'Sopen02g025330' => 'spe', 'Sopen06g031000' => 'spe', 'Sopen09g008240' => 'spe', 'Sopen09g025210' => 'spe', 'Sopen11g026600' => 'spe', 'Sopen11g030170' => 'spe', 'Sp1g10420' => 'spa', 'Sp3g06570' => 'spa', 'Sp4g10660' => 'spa', 'Sp5g16460' => 'spa', 'Sp6g22710' => 'spa', 'TAR365G0112' => 'tar', 'TAR369G0717' => 'tar', 'TAR374G0976' => 'tar', 'TAR623G1128' => 'tar', 'TAR626G1937' => 'tar', 'TAR627G0123' => 'tar', 'TAR628G0305' => 'tar', 'TAR636G1176' => 'tar', 'TAR636G2442' => 'tar', 'THA.LOC104800556' => 'tha', 'THA.LOC104809501' => 'tha', 'THA.LOC104815126' => 'tha', 'THA.LOC104815732' => 'tha', 'THA.LOC104823528' => 'tha', 'Thecc.02G365600' => 'tca', 'Thecc.06G222300' => 'tca', 'Thecc.09G261800' => 'tca', 'Thecc.09G291400' => 'tca', 'Thhalv10003028m.g' => 'esa', 'Thhalv10007886m.g' => 'esa', 'Thhalv10016085m.g' => 'esa', 'Thhalv10016681m.g' => 'esa', 'Thhalv10020951m.g' => 'esa', 'TPR.G15598' => 'tpr', 'TPR.G29305' => 'tpr', 'TPR.G32395' => 'tpr', 'TPR.G36998' => 'tpr', 'TPR.G4227' => 'tpr', 'TWI18G1433' => 'twi', 'TWI31G0755' => 'twi', 'TWI38G0912' => 'twi', 'TWI75G1097' => 'twi', 'TWI75G1619' => 'twi', 'TWI79G1336' => 'twi', 'unitig_0.g943' => 'ugi', 'unitig_0.g944' => 'ugi', 'unitig_22.g6646' => 'ugi', 'unitig_37.g12681' => 'ugi', 'unitig_8.g3290' => 'ugi', 'vmacro03278' => 'vma', 'vmacro12197' => 'vma', 'vmacro14478' => 'vma', 'vmacro15787' => 'vma', 'vmacro15789' => 'vma', 'vmacro15790' => 'vma', 'vmacro15806' => 'vma', 'vmacro22907' => 'vma', 'vmacro22908' => 'vma', 'vmacro22909' => 'vma', 'vmacro23108' => 'vma', 'VMungo0540G0540' => 'vmu', 'VMungo0540G2468' => 'vmu', 'VMungo1080G0390' => 'vmu', 'VMungo1080G1165' => 'vmu', 'VMungo1127G0170' => 'vmu', 'VMungo1127G2099' => 'vmu', 'VMungo1215G3013' => 'vmu', 'Zm00001eb013110' => 'zma', 'Zm00001eb084260' => 'zma', 'Zm00001eb096110' => 'zma', 'Zm00001eb217510' => 'zma', 'Zm00001eb322550' => 'zma', 'Zm00001eb390770' => 'zma', 'Zm00001eb397170' => 'zma', 'Zm00001eb404610' => 'zma', 'Zm00001eb421790' => 'zma' ) $gf_id = 'HOM05D000911' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000911' ) $data_identifier = 'HOM05D000911' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 16, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 5, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 6, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 8, 'nnu' => (int) 16, 'oeu' => (int) 8, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 5, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 16, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421790' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000911', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27780' => 'bna', 'A03p35380' => 'bna', 'A04p21160' => 'bna', 'A05p40570' => 'bna', 'A06p26900' => 'bna', 'A08p33230' => 'bna', 'A09p65960' => 'bna', 'A10p18290' => 'bna', 'Aa31LG1G12990' => 'aar', 'Aa31LG1G2980' => 'aar', 'Aa31LG4G14320' => 'aar', 'Aa31LG7G11800' => 'aar', 'Aa31sc36G50' => 'aar', 'Aa31sc36G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3721' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5459' => 'aag', 'Actinidia03028' => 'ach', 'Actinidia03753' => 'ach', 'Actinidia04187' => 'ach', 'Actinidia05509' => 'ach', 'Actinidia24180' => 'ach', 'Actinidia26906' => 'ach', 'Actinidia37097' => 'ach', 'Actinidia38249' => 'ach', 'Ah.01g003470' => 'amhyb', 'Ah.01g004580' => 'amhyb', 'Ah.01g014850' => 'amhyb', 'Ah.01g016830' => 'amhyb', 'Ah.14g088000' => 'amhyb', 'AL1G22980' => 'aly', 'AL3G18990' => 'aly', 'AL4G22440' => 'aly', 'AL4G33180' => 'aly', 'AL5G22920' => 'aly', 'AL6G33660' => 'aly', 'AL8G20720' => 'aly', 'Aqoxy1G00935' => 'aox', 'Aqoxy1G02094' => 'aox', 'Aqoxy2G01239' => 'aox', 'Aqoxy4G01870' => 'aox', 'Aqoxy7G00450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.36ZVTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71EM27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5D6C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH3WRE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3NCM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RIM768' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YB5YRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z36GDV' => 'arhy', 'AT1G08250' => 'ath', 'AT1G11790' => 'ath', 'AT2G27820' => 'ath', 'AT3G07630' => 'ath', 'AT3G44720' => 'ath', 'AT5G22630' => 'ath', 'ATR0693G304' => 'atr', 'ATR0794G109' => 'atr', 'ATR0820G120' => 'atr', 'ATR1159G064' => 'atr', 'Atru.chr10.2239' => 'acertr', 'Atru.chr3.3371' => 'acertr', 'Atru.chr6.3202' => 'acertr', 'AUR62006499' => 'cqu', 'AUR62012718' => 'cqu', 'AUR62021938' => 'cqu', 'AUR62023932' => 'cqu', 'AUR62025034' => 'cqu', 'AUR62025035' => 'cqu', 'AUR62038307' => 'cqu', 'AUR62043466' => 'cqu', 'BcaB02g10748' => 'bca', 'BcaB03g13231' => 'bca', 'BcaB03g14689' => 'bca', 'BcaB05g22716' => 'bca', 'BcaB06g28172' => 'bca', 'BcaB08g36413' => 'bca', 'BcaC01g02186' => 'bca', 'BcaC01g04272' => 'bca', 'BcaC02g08080' => 'bca', 'BcaC02g08227' => 'bca', 'BcaC03g13901' => 'bca', 'BcaC04g19593' => 'bca', 'BcaC04g20874' => 'bca', 'BcaC05g29557' => 'bca', 'BcaC06g35505' => 'bca', 'BcaC07g41954' => 'bca', 'BcaC07g41955' => 'bca', 'BcaC07g41956' => 'bca', 'BcaC07g42519' => 'bca', 'BcaC07g42520' => 'bca', 'BcaC07g42523' => 'bca', 'BcaC07g42524' => 'bca', 'BcaC07g42525' => 'bca', 'BcaC08g47480' => 'bca', 'BcaC08g47481' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00530' => 'bna', 'BolC2t07178H' => 'bol', 'BolC3t16567H' => 'bol', 'BolC4t27234H' => 'bol', 'BolC5t29728H' => 'bol', 'BolC5t34622H' => 'bol', 'BolC6t40321H' => 'bol', 'BolC7t42028H' => 'bol', 'BolC8t49125H' => 'bol', 'BolC8t52538H' => 'bol', 'BolC8t52539H' => 'bol', 'BolC9t56681H' => 'bol', 'BolC9t58266H' => 'bol', 'BolSC21t60294H' => 'bol', 'BraA02t05670Z' => 'bra', 'BraA03t12716Z' => 'bra', 'BraA04t17685Z' => 'bra', 'BraA05t22788Z' => 'bra', 'BraA06t24032Z' => 'bra', 'BraA06t25625Z' => 'bra', 'BraA07t27930Z' => 'bra', 'BraA08t35242Z' => 'bra', 'BraA09t38609Z' => 'bra', 'BraA10t43905Z' => 'bra', 'C02p11060' => 'bna', 'C03p42990' => 'bna', 'C03p67310' => 'bna', 'C04p56990' => 'bna', 'C04p58660' => 'bna', 'C05p09890' => 'bna', 'C05p59680' => 'bna', 'C06p19830' => 'bna', 'C06p53040' => 'bna', 'C07p15230' => 'bna', 'C08p50070' => 'bna', 'C08p50090' => 'bna', 'C09p38330' => 'bna', 'C09p53940' => 'bna', 'CAN.G1014.1' => 'can', 'CAN.G644.30' => 'can', 'CAN.G84.47' => 'can', 'CAN.G919.8' => 'can', 'CANSAT54G0113' => 'cansat', 'CANSAT54G1286' => 'cansat', 'CANSAT64G1020' => 'cansat', 'CARHR008080' => 'chi', 'CARHR008090' => 'chi', 'CARHR012130' => 'chi', 'CARHR038390' => 'chi', 'CARHR082330' => 'chi', 'CARHR120520' => 'chi', 'CARHR151470' => 'chi', 'CARHR190950' => 'chi', 'Carub.0001s0760' => 'cru', 'Carub.0001s1146' => 'cru', 'Carub.0003s0721' => 'cru', 'Carub.0004s0858' => 'cru', 'Carub.0005s1040' => 'cru', 'Carub.0006s2035' => 'cru', 'Carub.0015s0005' => 'cru', 'Ca_01607_v3' => 'car', 'Ca_01677_v3' => 'car', 'Ca_06087_v3' => 'car', 'Ca_19238_v3' => 'car', 'Ca_19373_v3' => 'car', 'Ca_21079_v3' => 'car', 'CBR_g54016' => 'cbr', 'CBR_g54018' => 'cbr', 'CBR_g54020' => 'cbr', 'Cc01_g09780' => 'ccan', 'Cc01_g11680' => 'ccan', 'Cc02_g15610' => 'ccan', 'Cc05_g04350' => 'ccan', 'Cc09_g01580' => 'ccan', 'CDE01G0795' => 'cde', 'CDE02G2024' => 'cde', 'CDE02G2260' => 'cde', 'CDE02G4561' => 'cde', 'CDE05G2733' => 'cde', 'CDE05G3422' => 'cde', 'CDE06G2003' => 'cde', 'CDE08G0576' => 'cde', 'CDE09G0048' => 'cde', 'CDE11G0805' => 'cde', 'Cfa003644' => 'cfa', 'Cfa006290' => 'cfa', 'Cfa010080' => 'cfa', 'Cfa011376' => 'cfa', 'Cfa011576' => 'cfa', 'Cfa011577' => 'cfa', 'Cfa014389' => 'cfa', 'Ciclev10006044m.g' => 'ccl', 'Ciclev10006954m.g' => 'ccl', 'Ciclev10015131m.g' => 'ccl', 'Ciclev10015580m.g' => 'ccl', 'Ciclev10028359m.g' => 'ccl', 'Ciclev10028573m.g' => 'ccl', 'CiPaw.03G159300' => 'cil', 'CiPaw.04G115100' => 'cil', 'CiPaw.09G092800' => 'cil', 'CiPaw.10G071800' => 'cil', 'CiPaw.13G105800' => 'cil', 'CiPaw.13G141000' => 'cil', 'CiPaw.14G103400' => 'cil', 'ClCG01G012700' => 'cla', 'ClCG01G012720' => 'cla', 'ClCG01G021920' => 'cla', 'ClCG02G008870' => 'cla', 'ClCG02G020840' => 'cla', 'ClCG02G021930' => 'cla', 'COL.COLO4_19302' => 'col', 'COL.COLO4_25262' => 'col', 'COL.COLO4_31788' => 'col', 'Cpa.g.c34684' => 'cpa', 'Cpa.g.c36520.1' => 'cpa', 'Cpa.g.c45626' => 'cpa', 'Cpa.g.sc121.17' => 'cpa', 'Cpa.g.sc13.22' => 'cpa', 'Cpa.g.sc87.88' => 'cpa', 'Cre06.g261800' => 'cre', 'CsaV3_1G014500' => 'csa', 'CsaV3_1G014510' => 'csa', 'CsaV3_2G034880' => 'csa', 'CsaV3_6G014760' => 'csa', 'CsaV3_6G021500' => 'csa', 'CsaV3_6G048980' => 'csa', 'CSS0002511' => 'camsi', 'CSS0007556' => 'camsi', 'CSS0008532' => 'camsi', 'CSS0009709' => 'camsi', 'CSS0010486' => 'camsi', 'CSS0016768' => 'camsi', 'CSS0023512' => 'camsi', 'CSS0025341' => 'camsi', 'CSS0027999' => 'camsi', 'CSS0028944' => 'camsi', 'CSS0032292' => 'camsi', 'CSS0032464' => 'camsi', 'CSS0037153' => 'camsi', 'CSS0039256' => 'camsi', 'CSS0048392' => 'camsi', 'CSS0050458' => 'camsi', 'DCAR_004224' => 'dca', 'DCAR_006147' => 'dca', 'DCAR_006465' => 'dca', 'DCAR_008159' => 'dca', 'DCAR_012164' => 'dca', 'DCAR_019764' => 'dca', 'Dinv05418' => 'din', 'Dinv10839' => 'din', 'Dinv12521' => 'din', 'Dinv13900' => 'din', 'Dinv29426' => 'din', 'Duzib150G0263' => 'dzi', 'Duzib168G1178' => 'dzi', 'Duzib168G1924' => 'dzi', 'Duzib170G0299' => 'dzi', 'Duzib170G0813' => 'dzi', 'Duzib235G1128' => 'dzi', 'Duzib248G1060' => 'dzi', 'ECA232G1910' => 'eca', 'ECA233G4621' => 'eca', 'ECA238G1216' => 'eca', 'ECA238G1784' => 'eca', 'ECA248G1242' => 'eca', 'EL10Ac8g20071' => 'bvu', 'EL10Ac9g21086' => 'bvu', 'EL10Ac9g22407' => 'bvu', 'EL10Ac9g22412' => 'bvu', 'Eucgr.A01119' => 'egr', 'Eucgr.E04043' => 'egr', 'Eucgr.J00428' => 'egr', 'Eucgr.J00958' => 'egr', 'FAN11G3091' => 'fan', 'FAN11G3651' => 'fan', 'FAN16G2566' => 'fan', 'FAN21G3155' => 'fan', 'FAN21G3400' => 'fan', 'FAN21G3543' => 'fan', 'FAN25G0234' => 'fan', 'FAN25G1422' => 'fan', 'FAN25G3392' => 'fan', 'FvH4_3g01940' => 'fve', 'FvH4_3g29870' => 'fve', 'FvH4_3g33680' => 'fve', 'Glyma.09G004200' => 'gma', 'Glyma.11G151288' => 'gma', 'Glyma.11G189100' => 'gma', 'Glyma.12G072500' => 'gma', 'Glyma.12G085500' => 'gma', 'Glyma.12G181800' => 'gma', 'Glyma.12G193000' => 'gma', 'Glyma.13G309300' => 'gma', 'Glyma.13G319000' => 'gma', 'Glyma.17G012600' => 'gma', 'Gohir.A06G148600' => 'ghi', 'Gohir.A07G115800' => 'ghi', 'Gohir.A08G003600' => 'ghi', 'Gohir.A09G093300' => 'ghi', 'Gohir.A09G105400' => 'ghi', 'Gohir.A09G105500' => 'ghi', 'Gohir.D06G154600' => 'ghi', 'Gohir.D07G120200' => 'ghi', 'Gohir.D08G013900' => 'ghi', 'Gohir.D09G093100' => 'ghi', 'Gohir.D09G102200' => 'ghi', 'Gohir.D09G102300' => 'ghi', 'Gorai.001G129400' => 'gra', 'Gorai.004G008200' => 'gra', 'Gorai.006G109800' => 'gra', 'Gorai.006G119500' => 'gra', 'Gorai.006G121300' => 'gra', 'Gorai.010G180700' => 'gra', 'GSVIVG01012716001' => 'vvi', 'GSVIVG01025118001' => 'vvi', 'GSVIVG01030439001' => 'vvi', 'GSVIVG01031397001' => 'vvi', 'HanXRQChr01g0004201' => 'han', 'HanXRQChr02g0054941' => 'han', 'HanXRQChr05g0141811' => 'han', 'HanXRQChr07g0197751' => 'han', 'HanXRQChr11g0346691' => 'han', 'HanXRQChr13g0396971' => 'han', 'HanXRQChr14g0432951' => 'han', 'HanXRQChr14g0452001' => 'han', 'HanXRQChr15g0496681' => 'han', 'HanXRQChr17g0557491' => 'han', 'HanXRQChr17g0557501' => 'han', 'Haze_06809' => 'cav', 'Haze_12852' => 'cav', 'Haze_15850' => 'cav', 'Haze_23446' => 'cav', 'Haze_23942' => 'cav', 'Haze_23943' => 'cav', 'Hma1.2p1_0091F.1_g046450' => 'hma', 'Hma1.2p1_0128F.1_g059910' => 'hma', 'Hma1.2p1_0249F.1_g102260' => 'hma', 'Hma1.2p1_0453F.1_g156190' => 'hma', 'Hma1.2p1_0695F.1_g204380' => 'hma', 'Hma1.2p1_0749F.1_g212650' => 'hma', 'Hma1.2p1_2156F.1_g315420' => 'hma', 'Hma1.2p1_2686F.1_g326940' => 'hma', 'HPP92_006428' => 'vpl', 'HPP92_012069' => 'vpl', 'HPP92_014129' => 'vpl', 'HPP92_014133' => 'vpl', 'HPP92_017315' => 'vpl', 'HPP92_026445' => 'vpl', 'HPP92_026446' => 'vpl', 'Hund00774' => 'sun', 'Hund07682' => 'sun', 'Hund21413' => 'sun', 'Hund23462' => 'sun', 'Hund23463' => 'sun', 'Lalb_Chr03g0027911' => 'lal', 'Lalb_Chr13g0304271' => 'lal', 'Lalb_Chr19g0137471' => 'lal', 'Lalb_Chr22g0350651' => 'lal', 'Lalb_Chr24g0395151' => 'lal', 'Lj1A1231T40' => 'lonja', 'Lj1A221T48' => 'lonja', 'Lj1C924T12' => 'lonja', 'Lj2C993G6' => 'lonja', 'Lj3g0005790' => 'lja', 'Lj3g0015432' => 'lja', 'Lj3g0017722' => 'lja', 'Lj3g0018497' => 'lja', 'Lj4g0025071' => 'lja', 'Lsat_1_v5_gn_1_129680' => 'lsa', 'Lsat_1_v5_gn_2_25321' => 'lsa', 'Lsat_1_v5_gn_2_95461' => 'lsa', 'Lsat_1_v5_gn_4_159620' => 'lsa', 'Lsat_1_v5_gn_6_41301' => 'lsa', 'Lsat_1_v5_gn_6_74660' => 'lsa', 'Lsat_1_v5_gn_7_11520' => 'lsa', 'Lsat_1_v5_gn_9_67680' => 'lsa', 'Manes.04G008300' => 'mes', 'Manes.04G008400' => 'mes', 'Manes.04G026500' => 'mes', 'Manes.10G135300' => 'mes', 'Manes.11G157300' => 'mes', 'Manes.12G074000' => 'mes', 'Manes.16G006200' => 'mes', 'Manes.17G026400' => 'mes', 'Mapoly0024s0086' => 'mpo', 'Mapoly0024s0087' => 'mpo', 'Mapoly0071s0057' => 'mpo', 'Mapoly0204s0012' => 'mpo', 'MBI04_g37681_MAGBIO' => 'mbi', 'MBI05_g17779_MAGBIO' => 'mbi', 'MBI12_g31184_MAGBIO' => 'mbi', 'MBI17_g11083_MAGBIO' => 'mbi', 'MBI18_g03883_MAGBIO' => 'mbi', 'MBI18_g28940_MAGBIO' => 'mbi', 'MCO01G690' => 'mco', 'MD03G1109900' => 'mdo', 'MD03G1134800' => 'mdo', 'MD05G1348000' => 'mdo', 'MD10G1322400' => 'mdo', 'MD11G1123300' => 'mdo', 'MD11G1157600' => 'mdo', 'Medtr2g084875' => 'mtr', 'Medtr2g088130' => 'mtr', 'Medtr4g055310' => 'mtr', 'Medtr4g061070' => 'mtr', 'Medtr4g132250' => 'mtr', 'MELO3C004795.2' => 'cme', 'MELO3C004797.2' => 'cme', 'MELO3C007396.2' => 'cme', 'MELO3C019277.2' => 'cme', 'MELO3C021449.2' => 'cme', 'MELO3C025736.2' => 'cme', 'Migut.D02175' => 'egut', 'Migut.H01573' => 'egut', 'Migut.M01327' => 'egut', 'Migut.N02513' => 'egut', 'MSTRG.14638' => 'ama', 'MSTRG.18632' => 'ama', 'MSTRG.7203' => 'ama', 'Nitab4.5_0000533g0140' => 'nta', 'Nitab4.5_0000888g0150' => 'nta', 'Nitab4.5_0001453g0040' => 'nta', 'Nitab4.5_0002827g0090' => 'nta', 'Nitab4.5_0003082g0040' => 'nta', 'Nitab4.5_0007799g0040' => 'nta', 'Nitab4.5_0008983g0010' => 'nta', 'Nitab4.5_0009017g0020' => 'nta', 'Nn1g02132' => 'nnu', 'Nn1g03492' => 'nnu', 'Nn1g03493' => 'nnu', 'Nn1g03494' => 'nnu', 'Nn1g07164' => 'nnu', 'Nn1g07291' => 'nnu', 'Nn2g10655' => 'nnu', 'Nn2g11652' => 'nnu', 'Nn2g14008' => 'nnu', 'Nn3g17476' => 'nnu', 'Nn3g17477' => 'nnu', 'Nn4g22370' => 'nnu', 'Nn4g25255' => 'nnu', 'Nn5g27755' => 'nnu', 'Nn6g34260' => 'nnu', 'Nn6g35041' => 'nnu', 'Oeu005924.1' => 'oeu', 'Oeu008383.1' => 'oeu', 'Oeu014928.1' => 'oeu', 'Oeu019889.1' => 'oeu', 'Oeu022271.1' => 'oeu', 'Oeu025271.1' => 'oeu', 'Oeu036302.1' => 'oeu', 'Oeu044100.1' => 'oeu', 'Os01g0528300' => 'osa', 'Os03g0286200' => 'osa', 'Os04g0406600' => 'osa', 'Os07g0512000' => 'osa', 'Os07g0694600' => 'osa', 'Os08g0411000' => 'osa', 'Os09g0565700' => 'osa', 'Os09g0566050' => 'osa', 'Os10g0523700' => 'osa', 'Peaxi162Scf00002g00514' => 'pax', 'Peaxi162Scf00047g01817' => 'pax', 'Peaxi162Scf00114g00001' => 'pax', 'Peaxi162Scf00147g00613' => 'pax', 'Peaxi162Scf00389g00425' => 'pax', 'PGR042G1139' => 'pgr', 'PGR042G3273' => 'pgr', 'PGR102G2180' => 'pgr', 'PGR119G0234' => 'pgr', 'PGR119G0668' => 'pgr', 'PGSC0003DMG400007122' => 'stu', 'PGSC0003DMG400016478' => 'stu', 'PGSC0003DMG400025374' => 'stu', 'PGSC0003DMG400026536' => 'stu', 'Phvul.003G079600' => 'pvu', 'Phvul.005G115600' => 'pvu', 'Phvul.005G127100' => 'pvu', 'Phvul.006G149500' => 'pvu', 'Phvul.006G149600' => 'pvu', 'Phvul.011G071800' => 'pvu', 'Phvul.011G090400' => 'pvu', 'Potri.004G013400' => 'ptr', 'Potri.004G188100' => 'ptr', 'Potri.008G195500' => 'ptr', 'Potri.009G148800' => 'ptr', 'Potri.011G004700' => 'ptr', 'Pp3c17_22810' => 'ppa', 'Pp3c18_4480' => 'ppa', 'Pp3c19_13030' => 'ppa', 'Pp3c1_33620' => 'ppa', 'Pp3c2_9380' => 'ppa', 'PRCOL_00001023' => 'pco', 'Prupe.3G216300' => 'ppe', 'Prupe.4G019500' => 'ppe', 'Prupe.6G092500' => 'ppe', 'Prupe.6G119200' => 'ppe', 'Psat0s1945g0080' => 'psa', 'Psat0s4167g0040' => 'psa', 'Psat1g185800' => 'psa', 'Psat4g006440' => 'psa', 'Psat4g006480' => 'psa', 'Psat4g168120' => 'psa', 'Psat5g255680' => 'psa', 'Psat5g261760' => 'psa', 'Psat7g222120' => 'psa', 'PSO063G7252' => 'pso', 'PSO170G4778' => 'pso', 'PSO210G2249' => 'pso', 'PSO339G2411' => 'pso', 'PSO339G2457' => 'pso', 'PSO339G2854' => 'pso', 'PSO339G4288' => 'pso', 'PSO339G4615' => 'pso', 'PSO384G2796' => 'pso', 'PSO384G2940' => 'pso', 'PSO384G4227' => 'pso', 'PSO478G1425' => 'pso', 'PSO541G3863' => 'pso', 'PSO675G0507' => 'pso', 'PSO782G0338' => 'pso', 'PSO832G0644' => 'pso', 'QL01p013664' => 'qlo', 'QL01p036598' => 'qlo', 'QL05p072984' => 'qlo', 'QL08p005768' => 'qlo', 'QL08p032743' => 'qlo', 'QL93p0073_0439' => 'qlo', 'QL93p0073_0444' => 'qlo', 'RcHm_v2.0_Chr5g0002851' => 'rch', 'RcHm_v2.0_Chr5g0055201' => 'rch', 'RcHm_v2.0_Chr5g0061191' => 'rch', 'RcHm_v2.0_Chr7g0203231' => 'rch', 'Rhsim01G0208100' => 'rsi', 'Rhsim01G0208200' => 'rsi', 'Rhsim02G0106500' => 'rsi', 'Rhsim03G0107900' => 'rsi', 'Rhsim06G0163400' => 'rsi', 'Rhsim13G0105200' => 'rsi', 'Sabra04G0006300' => 'sbr', 'Sabra04G0127000' => 'sbr', 'Sabra08G0148700' => 'sbr', 'Sabra09G0117400' => 'sbr', 'SalBow1G3326' => 'sbo', 'SalBow3G3228' => 'sbo', 'SalBow6G1634' => 'sbo', 'SalBow6G3603' => 'sbo', 'SalBow6G5266' => 'sbo', 'SalBow7G2265' => 'sbo', 'SalBow8G0850' => 'sbo', 'SalBow8G2592' => 'sbo', 'Sc05g0009240' => 'sci', 'Sc12g0002300' => 'sci', 'Sc21g0000100' => 'sci', 'Sc21g0004720' => 'sci', 'Sed0002949' => 'sed', 'Sed0004114' => 'sed', 'Sed0004306' => 'sed', 'Sed0006172' => 'sed', 'Sed0008413' => 'sed', 'Sed0013809' => 'sed', 'Sed0019556' => 'sed', 'SEGI_03570' => 'sgi', 'SEGI_07859' => 'sgi', 'SEGI_15042' => 'sgi', 'SEGI_16263' => 'sgi', 'SEGI_16552' => 'sgi', 'SEGI_24331' => 'sgi', 'SEGI_27316' => 'sgi', 'SEGI_29521' => 'sgi', 'SEGI_41342' => 'sgi', 'SGA_v2.0_scaffold27G11617' => 'sas', 'SGA_v2.0_scaffold316G48428' => 'sas', 'SGA_v2.0_scaffold49G18261' => 'sas', 'SGA_v2.0_scaffold7G03831' => 'sas', 'SGA_v2.0_scaffold93G28359' => 'sas', 'SHI02210' => 'shi', 'SHI06028' => 'shi', 'SHI06321' => 'shi', 'SMO111G0012' => 'smo', 'SMO228G0080' => 'smo', 'SMO356G0756' => 'smo', 'Solyc02g080620.3' => 'sly', 'Solyc06g074530.1' => 'sly', 'Solyc11g066890.1' => 'sly', 'Solyc11g072520.3' => 'sly', 'Sopen02g025330' => 'spe', 'Sopen06g031000' => 'spe', 'Sopen09g008240' => 'spe', 'Sopen09g025210' => 'spe', 'Sopen11g026600' => 'spe', 'Sopen11g030170' => 'spe', 'Sp1g10420' => 'spa', 'Sp3g06570' => 'spa', 'Sp4g10660' => 'spa', 'Sp5g16460' => 'spa', 'Sp6g22710' => 'spa', 'TAR365G0112' => 'tar', 'TAR369G0717' => 'tar', 'TAR374G0976' => 'tar', 'TAR623G1128' => 'tar', 'TAR626G1937' => 'tar', 'TAR627G0123' => 'tar', 'TAR628G0305' => 'tar', 'TAR636G1176' => 'tar', 'TAR636G2442' => 'tar', 'THA.LOC104800556' => 'tha', 'THA.LOC104809501' => 'tha', 'THA.LOC104815126' => 'tha', 'THA.LOC104815732' => 'tha', 'THA.LOC104823528' => 'tha', 'Thecc.02G365600' => 'tca', 'Thecc.06G222300' => 'tca', 'Thecc.09G261800' => 'tca', 'Thecc.09G291400' => 'tca', 'Thhalv10003028m.g' => 'esa', 'Thhalv10007886m.g' => 'esa', 'Thhalv10016085m.g' => 'esa', 'Thhalv10016681m.g' => 'esa', 'Thhalv10020951m.g' => 'esa', 'TPR.G15598' => 'tpr', 'TPR.G29305' => 'tpr', 'TPR.G32395' => 'tpr', 'TPR.G36998' => 'tpr', 'TPR.G4227' => 'tpr', 'TWI18G1433' => 'twi', 'TWI31G0755' => 'twi', 'TWI38G0912' => 'twi', 'TWI75G1097' => 'twi', 'TWI75G1619' => 'twi', 'TWI79G1336' => 'twi', 'unitig_0.g943' => 'ugi', 'unitig_0.g944' => 'ugi', 'unitig_22.g6646' => 'ugi', 'unitig_37.g12681' => 'ugi', 'unitig_8.g3290' => 'ugi', 'vmacro03278' => 'vma', 'vmacro12197' => 'vma', 'vmacro14478' => 'vma', 'vmacro15787' => 'vma', 'vmacro15789' => 'vma', 'vmacro15790' => 'vma', 'vmacro15806' => 'vma', 'vmacro22907' => 'vma', 'vmacro22908' => 'vma', 'vmacro22909' => 'vma', 'vmacro23108' => 'vma', 'VMungo0540G0540' => 'vmu', 'VMungo0540G2468' => 'vmu', 'VMungo1080G0390' => 'vmu', 'VMungo1080G1165' => 'vmu', 'VMungo1127G0170' => 'vmu', 'VMungo1127G2099' => 'vmu', 'VMungo1215G3013' => 'vmu', 'Zm00001eb013110' => 'zma', 'Zm00001eb084260' => 'zma', 'Zm00001eb096110' => 'zma', 'Zm00001eb217510' => 'zma', 'Zm00001eb322550' => 'zma', 'Zm00001eb390770' => 'zma', 'Zm00001eb397170' => 'zma', 'Zm00001eb404610' => 'zma', 'Zm00001eb421790' => 'zma' ), 'gf_id' => 'HOM05D000911', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000911' ), 'data_identifier' => 'HOM05D000911', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000911', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27780' => 'bna', 'A03p35380' => 'bna', 'A04p21160' => 'bna', 'A05p40570' => 'bna', 'A06p26900' => 'bna', 'A08p33230' => 'bna', 'A09p65960' => 'bna', 'A10p18290' => 'bna', 'Aa31LG1G12990' => 'aar', 'Aa31LG1G2980' => 'aar', 'Aa31LG4G14320' => 'aar', 'Aa31LG7G11800' => 'aar', 'Aa31sc36G50' => 'aar', 'Aa31sc36G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3721' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5459' => 'aag', 'Actinidia03028' => 'ach', 'Actinidia03753' => 'ach', 'Actinidia04187' => 'ach', 'Actinidia05509' => 'ach', 'Actinidia24180' => 'ach', 'Actinidia26906' => 'ach', 'Actinidia37097' => 'ach', 'Actinidia38249' => 'ach', 'Ah.01g003470' => 'amhyb', 'Ah.01g004580' => 'amhyb', 'Ah.01g014850' => 'amhyb', 'Ah.01g016830' => 'amhyb', 'Ah.14g088000' => 'amhyb', 'AL1G22980' => 'aly', 'AL3G18990' => 'aly', 'AL4G22440' => 'aly', 'AL4G33180' => 'aly', 'AL5G22920' => 'aly', 'AL6G33660' => 'aly', 'AL8G20720' => 'aly', 'Aqoxy1G00935' => 'aox', 'Aqoxy1G02094' => 'aox', 'Aqoxy2G01239' => 'aox', 'Aqoxy4G01870' => 'aox', 'Aqoxy7G00450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.36ZVTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71EM27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5D6C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH3WRE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3NCM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RIM768' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YB5YRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z36GDV' => 'arhy', 'AT1G08250' => 'ath', 'AT1G11790' => 'ath', 'AT2G27820' => 'ath', 'AT3G07630' => 'ath', 'AT3G44720' => 'ath', 'AT5G22630' => 'ath', 'ATR0693G304' => 'atr', 'ATR0794G109' => 'atr', 'ATR0820G120' => 'atr', 'ATR1159G064' => 'atr', 'Atru.chr10.2239' => 'acertr', 'Atru.chr3.3371' => 'acertr', 'Atru.chr6.3202' => 'acertr', 'AUR62006499' => 'cqu', 'AUR62012718' => 'cqu', 'AUR62021938' => 'cqu', 'AUR62023932' => 'cqu', 'AUR62025034' => 'cqu', 'AUR62025035' => 'cqu', 'AUR62038307' => 'cqu', 'AUR62043466' => 'cqu', 'BcaB02g10748' => 'bca', 'BcaB03g13231' => 'bca', 'BcaB03g14689' => 'bca', 'BcaB05g22716' => 'bca', 'BcaB06g28172' => 'bca', 'BcaB08g36413' => 'bca', 'BcaC01g02186' => 'bca', 'BcaC01g04272' => 'bca', 'BcaC02g08080' => 'bca', 'BcaC02g08227' => 'bca', 'BcaC03g13901' => 'bca', 'BcaC04g19593' => 'bca', 'BcaC04g20874' => 'bca', 'BcaC05g29557' => 'bca', 'BcaC06g35505' => 'bca', 'BcaC07g41954' => 'bca', 'BcaC07g41955' => 'bca', 'BcaC07g41956' => 'bca', 'BcaC07g42519' => 'bca', 'BcaC07g42520' => 'bca', 'BcaC07g42523' => 'bca', 'BcaC07g42524' => 'bca', 'BcaC07g42525' => 'bca', 'BcaC08g47480' => 'bca', 'BcaC08g47481' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00530' => 'bna', 'BolC2t07178H' => 'bol', 'BolC3t16567H' => 'bol', 'BolC4t27234H' => 'bol', 'BolC5t29728H' => 'bol', 'BolC5t34622H' => 'bol', 'BolC6t40321H' => 'bol', 'BolC7t42028H' => 'bol', 'BolC8t49125H' => 'bol', 'BolC8t52538H' => 'bol', 'BolC8t52539H' => 'bol', 'BolC9t56681H' => 'bol', 'BolC9t58266H' => 'bol', 'BolSC21t60294H' => 'bol', 'BraA02t05670Z' => 'bra', 'BraA03t12716Z' => 'bra', 'BraA04t17685Z' => 'bra', 'BraA05t22788Z' => 'bra', 'BraA06t24032Z' => 'bra', 'BraA06t25625Z' => 'bra', 'BraA07t27930Z' => 'bra', 'BraA08t35242Z' => 'bra', 'BraA09t38609Z' => 'bra', 'BraA10t43905Z' => 'bra', 'C02p11060' => 'bna', 'C03p42990' => 'bna', 'C03p67310' => 'bna', 'C04p56990' => 'bna', 'C04p58660' => 'bna', 'C05p09890' => 'bna', 'C05p59680' => 'bna', 'C06p19830' => 'bna', 'C06p53040' => 'bna', 'C07p15230' => 'bna', 'C08p50070' => 'bna', 'C08p50090' => 'bna', 'C09p38330' => 'bna', 'C09p53940' => 'bna', 'CAN.G1014.1' => 'can', 'CAN.G644.30' => 'can', 'CAN.G84.47' => 'can', 'CAN.G919.8' => 'can', 'CANSAT54G0113' => 'cansat', 'CANSAT54G1286' => 'cansat', 'CANSAT64G1020' => 'cansat', 'CARHR008080' => 'chi', 'CARHR008090' => 'chi', 'CARHR012130' => 'chi', 'CARHR038390' => 'chi', 'CARHR082330' => 'chi', 'CARHR120520' => 'chi', 'CARHR151470' => 'chi', 'CARHR190950' => 'chi', 'Carub.0001s0760' => 'cru', 'Carub.0001s1146' => 'cru', 'Carub.0003s0721' => 'cru', 'Carub.0004s0858' => 'cru', 'Carub.0005s1040' => 'cru', 'Carub.0006s2035' => 'cru', 'Carub.0015s0005' => 'cru', 'Ca_01607_v3' => 'car', 'Ca_01677_v3' => 'car', 'Ca_06087_v3' => 'car', 'Ca_19238_v3' => 'car', 'Ca_19373_v3' => 'car', 'Ca_21079_v3' => 'car', 'CBR_g54016' => 'cbr', 'CBR_g54018' => 'cbr', 'CBR_g54020' => 'cbr', 'Cc01_g09780' => 'ccan', 'Cc01_g11680' => 'ccan', 'Cc02_g15610' => 'ccan', 'Cc05_g04350' => 'ccan', 'Cc09_g01580' => 'ccan', 'CDE01G0795' => 'cde', 'CDE02G2024' => 'cde', 'CDE02G2260' => 'cde', 'CDE02G4561' => 'cde', 'CDE05G2733' => 'cde', 'CDE05G3422' => 'cde', 'CDE06G2003' => 'cde', 'CDE08G0576' => 'cde', 'CDE09G0048' => 'cde', 'CDE11G0805' => 'cde', 'Cfa003644' => 'cfa', 'Cfa006290' => 'cfa', 'Cfa010080' => 'cfa', 'Cfa011376' => 'cfa', 'Cfa011576' => 'cfa', 'Cfa011577' => 'cfa', 'Cfa014389' => 'cfa', 'Ciclev10006044m.g' => 'ccl', 'Ciclev10006954m.g' => 'ccl', 'Ciclev10015131m.g' => 'ccl', 'Ciclev10015580m.g' => 'ccl', 'Ciclev10028359m.g' => 'ccl', 'Ciclev10028573m.g' => 'ccl', 'CiPaw.03G159300' => 'cil', 'CiPaw.04G115100' => 'cil', 'CiPaw.09G092800' => 'cil', 'CiPaw.10G071800' => 'cil', 'CiPaw.13G105800' => 'cil', 'CiPaw.13G141000' => 'cil', 'CiPaw.14G103400' => 'cil', 'ClCG01G012700' => 'cla', 'ClCG01G012720' => 'cla', 'ClCG01G021920' => 'cla', 'ClCG02G008870' => 'cla', 'ClCG02G020840' => 'cla', 'ClCG02G021930' => 'cla', 'COL.COLO4_19302' => 'col', 'COL.COLO4_25262' => 'col', 'COL.COLO4_31788' => 'col', 'Cpa.g.c34684' => 'cpa', 'Cpa.g.c36520.1' => 'cpa', 'Cpa.g.c45626' => 'cpa', 'Cpa.g.sc121.17' => 'cpa', 'Cpa.g.sc13.22' => 'cpa', 'Cpa.g.sc87.88' => 'cpa', 'Cre06.g261800' => 'cre', 'CsaV3_1G014500' => 'csa', 'CsaV3_1G014510' => 'csa', 'CsaV3_2G034880' => 'csa', 'CsaV3_6G014760' => 'csa', 'CsaV3_6G021500' => 'csa', 'CsaV3_6G048980' => 'csa', 'CSS0002511' => 'camsi', 'CSS0007556' => 'camsi', 'CSS0008532' => 'camsi', 'CSS0009709' => 'camsi', 'CSS0010486' => 'camsi', 'CSS0016768' => 'camsi', 'CSS0023512' => 'camsi', 'CSS0025341' => 'camsi', 'CSS0027999' => 'camsi', 'CSS0028944' => 'camsi', 'CSS0032292' => 'camsi', 'CSS0032464' => 'camsi', 'CSS0037153' => 'camsi', 'CSS0039256' => 'camsi', 'CSS0048392' => 'camsi', 'CSS0050458' => 'camsi', 'DCAR_004224' => 'dca', 'DCAR_006147' => 'dca', 'DCAR_006465' => 'dca', 'DCAR_008159' => 'dca', 'DCAR_012164' => 'dca', 'DCAR_019764' => 'dca', 'Dinv05418' => 'din', 'Dinv10839' => 'din', 'Dinv12521' => 'din', 'Dinv13900' => 'din', 'Dinv29426' => 'din', 'Duzib150G0263' => 'dzi', 'Duzib168G1178' => 'dzi', 'Duzib168G1924' => 'dzi', 'Duzib170G0299' => 'dzi', 'Duzib170G0813' => 'dzi', 'Duzib235G1128' => 'dzi', 'Duzib248G1060' => 'dzi', 'ECA232G1910' => 'eca', 'ECA233G4621' => 'eca', 'ECA238G1216' => 'eca', 'ECA238G1784' => 'eca', 'ECA248G1242' => 'eca', 'EL10Ac8g20071' => 'bvu', 'EL10Ac9g21086' => 'bvu', 'EL10Ac9g22407' => 'bvu', 'EL10Ac9g22412' => 'bvu', 'Eucgr.A01119' => 'egr', 'Eucgr.E04043' => 'egr', 'Eucgr.J00428' => 'egr', 'Eucgr.J00958' => 'egr', 'FAN11G3091' => 'fan', 'FAN11G3651' => 'fan', 'FAN16G2566' => 'fan', 'FAN21G3155' => 'fan', 'FAN21G3400' => 'fan', 'FAN21G3543' => 'fan', 'FAN25G0234' => 'fan', 'FAN25G1422' => 'fan', 'FAN25G3392' => 'fan', 'FvH4_3g01940' => 'fve', 'FvH4_3g29870' => 'fve', 'FvH4_3g33680' => 'fve', 'Glyma.09G004200' => 'gma', 'Glyma.11G151288' => 'gma', 'Glyma.11G189100' => 'gma', 'Glyma.12G072500' => 'gma', 'Glyma.12G085500' => 'gma', 'Glyma.12G181800' => 'gma', 'Glyma.12G193000' => 'gma', 'Glyma.13G309300' => 'gma', 'Glyma.13G319000' => 'gma', 'Glyma.17G012600' => 'gma', 'Gohir.A06G148600' => 'ghi', 'Gohir.A07G115800' => 'ghi', 'Gohir.A08G003600' => 'ghi', 'Gohir.A09G093300' => 'ghi', 'Gohir.A09G105400' => 'ghi', 'Gohir.A09G105500' => 'ghi', 'Gohir.D06G154600' => 'ghi', 'Gohir.D07G120200' => 'ghi', 'Gohir.D08G013900' => 'ghi', 'Gohir.D09G093100' => 'ghi', 'Gohir.D09G102200' => 'ghi', 'Gohir.D09G102300' => 'ghi', 'Gorai.001G129400' => 'gra', 'Gorai.004G008200' => 'gra', 'Gorai.006G109800' => 'gra', 'Gorai.006G119500' => 'gra', 'Gorai.006G121300' => 'gra', 'Gorai.010G180700' => 'gra', 'GSVIVG01012716001' => 'vvi', 'GSVIVG01025118001' => 'vvi', 'GSVIVG01030439001' => 'vvi', 'GSVIVG01031397001' => 'vvi', 'HanXRQChr01g0004201' => 'han', 'HanXRQChr02g0054941' => 'han', 'HanXRQChr05g0141811' => 'han', 'HanXRQChr07g0197751' => 'han', 'HanXRQChr11g0346691' => 'han', 'HanXRQChr13g0396971' => 'han', 'HanXRQChr14g0432951' => 'han', 'HanXRQChr14g0452001' => 'han', 'HanXRQChr15g0496681' => 'han', 'HanXRQChr17g0557491' => 'han', 'HanXRQChr17g0557501' => 'han', 'Haze_06809' => 'cav', 'Haze_12852' => 'cav', 'Haze_15850' => 'cav', 'Haze_23446' => 'cav', 'Haze_23942' => 'cav', 'Haze_23943' => 'cav', 'Hma1.2p1_0091F.1_g046450' => 'hma', 'Hma1.2p1_0128F.1_g059910' => 'hma', 'Hma1.2p1_0249F.1_g102260' => 'hma', 'Hma1.2p1_0453F.1_g156190' => 'hma', 'Hma1.2p1_0695F.1_g204380' => 'hma', 'Hma1.2p1_0749F.1_g212650' => 'hma', 'Hma1.2p1_2156F.1_g315420' => 'hma', 'Hma1.2p1_2686F.1_g326940' => 'hma', 'HPP92_006428' => 'vpl', 'HPP92_012069' => 'vpl', 'HPP92_014129' => 'vpl', 'HPP92_014133' => 'vpl', 'HPP92_017315' => 'vpl', 'HPP92_026445' => 'vpl', 'HPP92_026446' => 'vpl', 'Hund00774' => 'sun', 'Hund07682' => 'sun', 'Hund21413' => 'sun', 'Hund23462' => 'sun', 'Hund23463' => 'sun', 'Lalb_Chr03g0027911' => 'lal', 'Lalb_Chr13g0304271' => 'lal', 'Lalb_Chr19g0137471' => 'lal', 'Lalb_Chr22g0350651' => 'lal', 'Lalb_Chr24g0395151' => 'lal', 'Lj1A1231T40' => 'lonja', 'Lj1A221T48' => 'lonja', 'Lj1C924T12' => 'lonja', 'Lj2C993G6' => 'lonja', 'Lj3g0005790' => 'lja', 'Lj3g0015432' => 'lja', 'Lj3g0017722' => 'lja', 'Lj3g0018497' => 'lja', 'Lj4g0025071' => 'lja', 'Lsat_1_v5_gn_1_129680' => 'lsa', 'Lsat_1_v5_gn_2_25321' => 'lsa', 'Lsat_1_v5_gn_2_95461' => 'lsa', 'Lsat_1_v5_gn_4_159620' => 'lsa', 'Lsat_1_v5_gn_6_41301' => 'lsa', 'Lsat_1_v5_gn_6_74660' => 'lsa', 'Lsat_1_v5_gn_7_11520' => 'lsa', 'Lsat_1_v5_gn_9_67680' => 'lsa', 'Manes.04G008300' => 'mes', 'Manes.04G008400' => 'mes', 'Manes.04G026500' => 'mes', 'Manes.10G135300' => 'mes', 'Manes.11G157300' => 'mes', 'Manes.12G074000' => 'mes', 'Manes.16G006200' => 'mes', 'Manes.17G026400' => 'mes', 'Mapoly0024s0086' => 'mpo', 'Mapoly0024s0087' => 'mpo', 'Mapoly0071s0057' => 'mpo', 'Mapoly0204s0012' => 'mpo', 'MBI04_g37681_MAGBIO' => 'mbi', 'MBI05_g17779_MAGBIO' => 'mbi', 'MBI12_g31184_MAGBIO' => 'mbi', 'MBI17_g11083_MAGBIO' => 'mbi', 'MBI18_g03883_MAGBIO' => 'mbi', 'MBI18_g28940_MAGBIO' => 'mbi', 'MCO01G690' => 'mco', 'MD03G1109900' => 'mdo', 'MD03G1134800' => 'mdo', 'MD05G1348000' => 'mdo', 'MD10G1322400' => 'mdo', 'MD11G1123300' => 'mdo', 'MD11G1157600' => 'mdo', 'Medtr2g084875' => 'mtr', 'Medtr2g088130' => 'mtr', 'Medtr4g055310' => 'mtr', 'Medtr4g061070' => 'mtr', 'Medtr4g132250' => 'mtr', 'MELO3C004795.2' => 'cme', 'MELO3C004797.2' => 'cme', 'MELO3C007396.2' => 'cme', 'MELO3C019277.2' => 'cme', 'MELO3C021449.2' => 'cme', 'MELO3C025736.2' => 'cme', 'Migut.D02175' => 'egut', 'Migut.H01573' => 'egut', 'Migut.M01327' => 'egut', 'Migut.N02513' => 'egut', 'MSTRG.14638' => 'ama', 'MSTRG.18632' => 'ama', 'MSTRG.7203' => 'ama', 'Nitab4.5_0000533g0140' => 'nta', 'Nitab4.5_0000888g0150' => 'nta', 'Nitab4.5_0001453g0040' => 'nta', 'Nitab4.5_0002827g0090' => 'nta', 'Nitab4.5_0003082g0040' => 'nta', 'Nitab4.5_0007799g0040' => 'nta', 'Nitab4.5_0008983g0010' => 'nta', 'Nitab4.5_0009017g0020' => 'nta', 'Nn1g02132' => 'nnu', 'Nn1g03492' => 'nnu', 'Nn1g03493' => 'nnu', 'Nn1g03494' => 'nnu', 'Nn1g07164' => 'nnu', 'Nn1g07291' => 'nnu', 'Nn2g10655' => 'nnu', 'Nn2g11652' => 'nnu', 'Nn2g14008' => 'nnu', 'Nn3g17476' => 'nnu', 'Nn3g17477' => 'nnu', 'Nn4g22370' => 'nnu', 'Nn4g25255' => 'nnu', 'Nn5g27755' => 'nnu', 'Nn6g34260' => 'nnu', 'Nn6g35041' => 'nnu', 'Oeu005924.1' => 'oeu', 'Oeu008383.1' => 'oeu', 'Oeu014928.1' => 'oeu', 'Oeu019889.1' => 'oeu', 'Oeu022271.1' => 'oeu', 'Oeu025271.1' => 'oeu', 'Oeu036302.1' => 'oeu', 'Oeu044100.1' => 'oeu', 'Os01g0528300' => 'osa', 'Os03g0286200' => 'osa', 'Os04g0406600' => 'osa', 'Os07g0512000' => 'osa', 'Os07g0694600' => 'osa', 'Os08g0411000' => 'osa', 'Os09g0565700' => 'osa', 'Os09g0566050' => 'osa', 'Os10g0523700' => 'osa', 'Peaxi162Scf00002g00514' => 'pax', 'Peaxi162Scf00047g01817' => 'pax', 'Peaxi162Scf00114g00001' => 'pax', 'Peaxi162Scf00147g00613' => 'pax', 'Peaxi162Scf00389g00425' => 'pax', 'PGR042G1139' => 'pgr', 'PGR042G3273' => 'pgr', 'PGR102G2180' => 'pgr', 'PGR119G0234' => 'pgr', 'PGR119G0668' => 'pgr', 'PGSC0003DMG400007122' => 'stu', 'PGSC0003DMG400016478' => 'stu', 'PGSC0003DMG400025374' => 'stu', 'PGSC0003DMG400026536' => 'stu', 'Phvul.003G079600' => 'pvu', 'Phvul.005G115600' => 'pvu', 'Phvul.005G127100' => 'pvu', 'Phvul.006G149500' => 'pvu', 'Phvul.006G149600' => 'pvu', 'Phvul.011G071800' => 'pvu', 'Phvul.011G090400' => 'pvu', 'Potri.004G013400' => 'ptr', 'Potri.004G188100' => 'ptr', 'Potri.008G195500' => 'ptr', 'Potri.009G148800' => 'ptr', 'Potri.011G004700' => 'ptr', 'Pp3c17_22810' => 'ppa', 'Pp3c18_4480' => 'ppa', 'Pp3c19_13030' => 'ppa', 'Pp3c1_33620' => 'ppa', 'Pp3c2_9380' => 'ppa', 'PRCOL_00001023' => 'pco', 'Prupe.3G216300' => 'ppe', 'Prupe.4G019500' => 'ppe', 'Prupe.6G092500' => 'ppe', 'Prupe.6G119200' => 'ppe', 'Psat0s1945g0080' => 'psa', 'Psat0s4167g0040' => 'psa', 'Psat1g185800' => 'psa', 'Psat4g006440' => 'psa', 'Psat4g006480' => 'psa', 'Psat4g168120' => 'psa', 'Psat5g255680' => 'psa', 'Psat5g261760' => 'psa', 'Psat7g222120' => 'psa', 'PSO063G7252' => 'pso', 'PSO170G4778' => 'pso', 'PSO210G2249' => 'pso', 'PSO339G2411' => 'pso', 'PSO339G2457' => 'pso', 'PSO339G2854' => 'pso', 'PSO339G4288' => 'pso', 'PSO339G4615' => 'pso', 'PSO384G2796' => 'pso', 'PSO384G2940' => 'pso', 'PSO384G4227' => 'pso', 'PSO478G1425' => 'pso', 'PSO541G3863' => 'pso', 'PSO675G0507' => 'pso', 'PSO782G0338' => 'pso', 'PSO832G0644' => 'pso', 'QL01p013664' => 'qlo', 'QL01p036598' => 'qlo', 'QL05p072984' => 'qlo', 'QL08p005768' => 'qlo', 'QL08p032743' => 'qlo', 'QL93p0073_0439' => 'qlo', 'QL93p0073_0444' => 'qlo', 'RcHm_v2.0_Chr5g0002851' => 'rch', 'RcHm_v2.0_Chr5g0055201' => 'rch', 'RcHm_v2.0_Chr5g0061191' => 'rch', 'RcHm_v2.0_Chr7g0203231' => 'rch', 'Rhsim01G0208100' => 'rsi', 'Rhsim01G0208200' => 'rsi', 'Rhsim02G0106500' => 'rsi', 'Rhsim03G0107900' => 'rsi', 'Rhsim06G0163400' => 'rsi', 'Rhsim13G0105200' => 'rsi', 'Sabra04G0006300' => 'sbr', 'Sabra04G0127000' => 'sbr', 'Sabra08G0148700' => 'sbr', 'Sabra09G0117400' => 'sbr', 'SalBow1G3326' => 'sbo', 'SalBow3G3228' => 'sbo', 'SalBow6G1634' => 'sbo', 'SalBow6G3603' => 'sbo', 'SalBow6G5266' => 'sbo', 'SalBow7G2265' => 'sbo', 'SalBow8G0850' => 'sbo', 'SalBow8G2592' => 'sbo', 'Sc05g0009240' => 'sci', 'Sc12g0002300' => 'sci', 'Sc21g0000100' => 'sci', 'Sc21g0004720' => 'sci', 'Sed0002949' => 'sed', 'Sed0004114' => 'sed', 'Sed0004306' => 'sed', 'Sed0006172' => 'sed', 'Sed0008413' => 'sed', 'Sed0013809' => 'sed', 'Sed0019556' => 'sed', 'SEGI_03570' => 'sgi', 'SEGI_07859' => 'sgi', 'SEGI_15042' => 'sgi', 'SEGI_16263' => 'sgi', 'SEGI_16552' => 'sgi', 'SEGI_24331' => 'sgi', 'SEGI_27316' => 'sgi', 'SEGI_29521' => 'sgi', 'SEGI_41342' => 'sgi', 'SGA_v2.0_scaffold27G11617' => 'sas', 'SGA_v2.0_scaffold316G48428' => 'sas', 'SGA_v2.0_scaffold49G18261' => 'sas', 'SGA_v2.0_scaffold7G03831' => 'sas', 'SGA_v2.0_scaffold93G28359' => 'sas', 'SHI02210' => 'shi', 'SHI06028' => 'shi', 'SHI06321' => 'shi', 'SMO111G0012' => 'smo', 'SMO228G0080' => 'smo', 'SMO356G0756' => 'smo', 'Solyc02g080620.3' => 'sly', 'Solyc06g074530.1' => 'sly', 'Solyc11g066890.1' => 'sly', 'Solyc11g072520.3' => 'sly', 'Sopen02g025330' => 'spe', 'Sopen06g031000' => 'spe', 'Sopen09g008240' => 'spe', 'Sopen09g025210' => 'spe', 'Sopen11g026600' => 'spe', 'Sopen11g030170' => 'spe', 'Sp1g10420' => 'spa', 'Sp3g06570' => 'spa', 'Sp4g10660' => 'spa', 'Sp5g16460' => 'spa', 'Sp6g22710' => 'spa', 'TAR365G0112' => 'tar', 'TAR369G0717' => 'tar', 'TAR374G0976' => 'tar', 'TAR623G1128' => 'tar', 'TAR626G1937' => 'tar', 'TAR627G0123' => 'tar', 'TAR628G0305' => 'tar', 'TAR636G1176' => 'tar', 'TAR636G2442' => 'tar', 'THA.LOC104800556' => 'tha', 'THA.LOC104809501' => 'tha', 'THA.LOC104815126' => 'tha', 'THA.LOC104815732' => 'tha', 'THA.LOC104823528' => 'tha', 'Thecc.02G365600' => 'tca', 'Thecc.06G222300' => 'tca', 'Thecc.09G261800' => 'tca', 'Thecc.09G291400' => 'tca', 'Thhalv10003028m.g' => 'esa', 'Thhalv10007886m.g' => 'esa', 'Thhalv10016085m.g' => 'esa', 'Thhalv10016681m.g' => 'esa', 'Thhalv10020951m.g' => 'esa', 'TPR.G15598' => 'tpr', 'TPR.G29305' => 'tpr', 'TPR.G32395' => 'tpr', 'TPR.G36998' => 'tpr', 'TPR.G4227' => 'tpr', 'TWI18G1433' => 'twi', 'TWI31G0755' => 'twi', 'TWI38G0912' => 'twi', 'TWI75G1097' => 'twi', 'TWI75G1619' => 'twi', 'TWI79G1336' => 'twi', 'unitig_0.g943' => 'ugi', 'unitig_0.g944' => 'ugi', 'unitig_22.g6646' => 'ugi', 'unitig_37.g12681' => 'ugi', 'unitig_8.g3290' => 'ugi', 'vmacro03278' => 'vma', 'vmacro12197' => 'vma', 'vmacro14478' => 'vma', 'vmacro15787' => 'vma', 'vmacro15789' => 'vma', 'vmacro15790' => 'vma', 'vmacro15806' => 'vma', 'vmacro22907' => 'vma', 'vmacro22908' => 'vma', 'vmacro22909' => 'vma', 'vmacro23108' => 'vma', 'VMungo0540G0540' => 'vmu', 'VMungo0540G2468' => 'vmu', 'VMungo1080G0390' => 'vmu', 'VMungo1080G1165' => 'vmu', 'VMungo1127G0170' => 'vmu', 'VMungo1127G2099' => 'vmu', 'VMungo1215G3013' => 'vmu', 'Zm00001eb013110' => 'zma', 'Zm00001eb084260' => 'zma', 'Zm00001eb096110' => 'zma', 'Zm00001eb217510' => 'zma', 'Zm00001eb322550' => 'zma', 'Zm00001eb390770' => 'zma', 'Zm00001eb397170' => 'zma', 'Zm00001eb404610' => 'zma', 'Zm00001eb421790' => 'zma' ) $gf_id = 'HOM05D000911' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000911' ) $data_identifier = 'HOM05D000911' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 16, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 5, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 6, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 8, 'nnu' => (int) 16, 'oeu' => (int) 8, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 5, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 16, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421790' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000911', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27780' => 'bna', 'A03p35380' => 'bna', 'A04p21160' => 'bna', 'A05p40570' => 'bna', 'A06p26900' => 'bna', 'A08p33230' => 'bna', 'A09p65960' => 'bna', 'A10p18290' => 'bna', 'Aa31LG1G12990' => 'aar', 'Aa31LG1G2980' => 'aar', 'Aa31LG4G14320' => 'aar', 'Aa31LG7G11800' => 'aar', 'Aa31sc36G50' => 'aar', 'Aa31sc36G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3721' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5459' => 'aag', 'Actinidia03028' => 'ach', 'Actinidia03753' => 'ach', 'Actinidia04187' => 'ach', 'Actinidia05509' => 'ach', 'Actinidia24180' => 'ach', 'Actinidia26906' => 'ach', 'Actinidia37097' => 'ach', 'Actinidia38249' => 'ach', 'Ah.01g003470' => 'amhyb', 'Ah.01g004580' => 'amhyb', 'Ah.01g014850' => 'amhyb', 'Ah.01g016830' => 'amhyb', 'Ah.14g088000' => 'amhyb', 'AL1G22980' => 'aly', 'AL3G18990' => 'aly', 'AL4G22440' => 'aly', 'AL4G33180' => 'aly', 'AL5G22920' => 'aly', 'AL6G33660' => 'aly', 'AL8G20720' => 'aly', 'Aqoxy1G00935' => 'aox', 'Aqoxy1G02094' => 'aox', 'Aqoxy2G01239' => 'aox', 'Aqoxy4G01870' => 'aox', 'Aqoxy7G00450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.36ZVTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71EM27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5D6C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH3WRE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3NCM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RIM768' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YB5YRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z36GDV' => 'arhy', 'AT1G08250' => 'ath', 'AT1G11790' => 'ath', 'AT2G27820' => 'ath', 'AT3G07630' => 'ath', 'AT3G44720' => 'ath', 'AT5G22630' => 'ath', 'ATR0693G304' => 'atr', 'ATR0794G109' => 'atr', 'ATR0820G120' => 'atr', 'ATR1159G064' => 'atr', 'Atru.chr10.2239' => 'acertr', 'Atru.chr3.3371' => 'acertr', 'Atru.chr6.3202' => 'acertr', 'AUR62006499' => 'cqu', 'AUR62012718' => 'cqu', 'AUR62021938' => 'cqu', 'AUR62023932' => 'cqu', 'AUR62025034' => 'cqu', 'AUR62025035' => 'cqu', 'AUR62038307' => 'cqu', 'AUR62043466' => 'cqu', 'BcaB02g10748' => 'bca', 'BcaB03g13231' => 'bca', 'BcaB03g14689' => 'bca', 'BcaB05g22716' => 'bca', 'BcaB06g28172' => 'bca', 'BcaB08g36413' => 'bca', 'BcaC01g02186' => 'bca', 'BcaC01g04272' => 'bca', 'BcaC02g08080' => 'bca', 'BcaC02g08227' => 'bca', 'BcaC03g13901' => 'bca', 'BcaC04g19593' => 'bca', 'BcaC04g20874' => 'bca', 'BcaC05g29557' => 'bca', 'BcaC06g35505' => 'bca', 'BcaC07g41954' => 'bca', 'BcaC07g41955' => 'bca', 'BcaC07g41956' => 'bca', 'BcaC07g42519' => 'bca', 'BcaC07g42520' => 'bca', 'BcaC07g42523' => 'bca', 'BcaC07g42524' => 'bca', 'BcaC07g42525' => 'bca', 'BcaC08g47480' => 'bca', 'BcaC08g47481' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00530' => 'bna', 'BolC2t07178H' => 'bol', 'BolC3t16567H' => 'bol', 'BolC4t27234H' => 'bol', 'BolC5t29728H' => 'bol', 'BolC5t34622H' => 'bol', 'BolC6t40321H' => 'bol', 'BolC7t42028H' => 'bol', 'BolC8t49125H' => 'bol', 'BolC8t52538H' => 'bol', 'BolC8t52539H' => 'bol', 'BolC9t56681H' => 'bol', 'BolC9t58266H' => 'bol', 'BolSC21t60294H' => 'bol', 'BraA02t05670Z' => 'bra', 'BraA03t12716Z' => 'bra', 'BraA04t17685Z' => 'bra', 'BraA05t22788Z' => 'bra', 'BraA06t24032Z' => 'bra', 'BraA06t25625Z' => 'bra', 'BraA07t27930Z' => 'bra', 'BraA08t35242Z' => 'bra', 'BraA09t38609Z' => 'bra', 'BraA10t43905Z' => 'bra', 'C02p11060' => 'bna', 'C03p42990' => 'bna', 'C03p67310' => 'bna', 'C04p56990' => 'bna', 'C04p58660' => 'bna', 'C05p09890' => 'bna', 'C05p59680' => 'bna', 'C06p19830' => 'bna', 'C06p53040' => 'bna', 'C07p15230' => 'bna', 'C08p50070' => 'bna', 'C08p50090' => 'bna', 'C09p38330' => 'bna', 'C09p53940' => 'bna', 'CAN.G1014.1' => 'can', 'CAN.G644.30' => 'can', 'CAN.G84.47' => 'can', 'CAN.G919.8' => 'can', 'CANSAT54G0113' => 'cansat', 'CANSAT54G1286' => 'cansat', 'CANSAT64G1020' => 'cansat', 'CARHR008080' => 'chi', 'CARHR008090' => 'chi', 'CARHR012130' => 'chi', 'CARHR038390' => 'chi', 'CARHR082330' => 'chi', 'CARHR120520' => 'chi', 'CARHR151470' => 'chi', 'CARHR190950' => 'chi', 'Carub.0001s0760' => 'cru', 'Carub.0001s1146' => 'cru', 'Carub.0003s0721' => 'cru', 'Carub.0004s0858' => 'cru', 'Carub.0005s1040' => 'cru', 'Carub.0006s2035' => 'cru', 'Carub.0015s0005' => 'cru', 'Ca_01607_v3' => 'car', 'Ca_01677_v3' => 'car', 'Ca_06087_v3' => 'car', 'Ca_19238_v3' => 'car', 'Ca_19373_v3' => 'car', 'Ca_21079_v3' => 'car', 'CBR_g54016' => 'cbr', 'CBR_g54018' => 'cbr', 'CBR_g54020' => 'cbr', 'Cc01_g09780' => 'ccan', 'Cc01_g11680' => 'ccan', 'Cc02_g15610' => 'ccan', 'Cc05_g04350' => 'ccan', 'Cc09_g01580' => 'ccan', 'CDE01G0795' => 'cde', 'CDE02G2024' => 'cde', 'CDE02G2260' => 'cde', 'CDE02G4561' => 'cde', 'CDE05G2733' => 'cde', 'CDE05G3422' => 'cde', 'CDE06G2003' => 'cde', 'CDE08G0576' => 'cde', 'CDE09G0048' => 'cde', 'CDE11G0805' => 'cde', 'Cfa003644' => 'cfa', 'Cfa006290' => 'cfa', 'Cfa010080' => 'cfa', 'Cfa011376' => 'cfa', 'Cfa011576' => 'cfa', 'Cfa011577' => 'cfa', 'Cfa014389' => 'cfa', 'Ciclev10006044m.g' => 'ccl', 'Ciclev10006954m.g' => 'ccl', 'Ciclev10015131m.g' => 'ccl', 'Ciclev10015580m.g' => 'ccl', 'Ciclev10028359m.g' => 'ccl', 'Ciclev10028573m.g' => 'ccl', 'CiPaw.03G159300' => 'cil', 'CiPaw.04G115100' => 'cil', 'CiPaw.09G092800' => 'cil', 'CiPaw.10G071800' => 'cil', 'CiPaw.13G105800' => 'cil', 'CiPaw.13G141000' => 'cil', 'CiPaw.14G103400' => 'cil', 'ClCG01G012700' => 'cla', 'ClCG01G012720' => 'cla', 'ClCG01G021920' => 'cla', 'ClCG02G008870' => 'cla', 'ClCG02G020840' => 'cla', 'ClCG02G021930' => 'cla', 'COL.COLO4_19302' => 'col', 'COL.COLO4_25262' => 'col', 'COL.COLO4_31788' => 'col', 'Cpa.g.c34684' => 'cpa', 'Cpa.g.c36520.1' => 'cpa', 'Cpa.g.c45626' => 'cpa', 'Cpa.g.sc121.17' => 'cpa', 'Cpa.g.sc13.22' => 'cpa', 'Cpa.g.sc87.88' => 'cpa', 'Cre06.g261800' => 'cre', 'CsaV3_1G014500' => 'csa', 'CsaV3_1G014510' => 'csa', 'CsaV3_2G034880' => 'csa', 'CsaV3_6G014760' => 'csa', 'CsaV3_6G021500' => 'csa', 'CsaV3_6G048980' => 'csa', 'CSS0002511' => 'camsi', 'CSS0007556' => 'camsi', 'CSS0008532' => 'camsi', 'CSS0009709' => 'camsi', 'CSS0010486' => 'camsi', 'CSS0016768' => 'camsi', 'CSS0023512' => 'camsi', 'CSS0025341' => 'camsi', 'CSS0027999' => 'camsi', 'CSS0028944' => 'camsi', 'CSS0032292' => 'camsi', 'CSS0032464' => 'camsi', 'CSS0037153' => 'camsi', 'CSS0039256' => 'camsi', 'CSS0048392' => 'camsi', 'CSS0050458' => 'camsi', 'DCAR_004224' => 'dca', 'DCAR_006147' => 'dca', 'DCAR_006465' => 'dca', 'DCAR_008159' => 'dca', 'DCAR_012164' => 'dca', 'DCAR_019764' => 'dca', 'Dinv05418' => 'din', 'Dinv10839' => 'din', 'Dinv12521' => 'din', 'Dinv13900' => 'din', 'Dinv29426' => 'din', 'Duzib150G0263' => 'dzi', 'Duzib168G1178' => 'dzi', 'Duzib168G1924' => 'dzi', 'Duzib170G0299' => 'dzi', 'Duzib170G0813' => 'dzi', 'Duzib235G1128' => 'dzi', 'Duzib248G1060' => 'dzi', 'ECA232G1910' => 'eca', 'ECA233G4621' => 'eca', 'ECA238G1216' => 'eca', 'ECA238G1784' => 'eca', 'ECA248G1242' => 'eca', 'EL10Ac8g20071' => 'bvu', 'EL10Ac9g21086' => 'bvu', 'EL10Ac9g22407' => 'bvu', 'EL10Ac9g22412' => 'bvu', 'Eucgr.A01119' => 'egr', 'Eucgr.E04043' => 'egr', 'Eucgr.J00428' => 'egr', 'Eucgr.J00958' => 'egr', 'FAN11G3091' => 'fan', 'FAN11G3651' => 'fan', 'FAN16G2566' => 'fan', 'FAN21G3155' => 'fan', 'FAN21G3400' => 'fan', 'FAN21G3543' => 'fan', 'FAN25G0234' => 'fan', 'FAN25G1422' => 'fan', 'FAN25G3392' => 'fan', 'FvH4_3g01940' => 'fve', 'FvH4_3g29870' => 'fve', 'FvH4_3g33680' => 'fve', 'Glyma.09G004200' => 'gma', 'Glyma.11G151288' => 'gma', 'Glyma.11G189100' => 'gma', 'Glyma.12G072500' => 'gma', 'Glyma.12G085500' => 'gma', 'Glyma.12G181800' => 'gma', 'Glyma.12G193000' => 'gma', 'Glyma.13G309300' => 'gma', 'Glyma.13G319000' => 'gma', 'Glyma.17G012600' => 'gma', 'Gohir.A06G148600' => 'ghi', 'Gohir.A07G115800' => 'ghi', 'Gohir.A08G003600' => 'ghi', 'Gohir.A09G093300' => 'ghi', 'Gohir.A09G105400' => 'ghi', 'Gohir.A09G105500' => 'ghi', 'Gohir.D06G154600' => 'ghi', 'Gohir.D07G120200' => 'ghi', 'Gohir.D08G013900' => 'ghi', 'Gohir.D09G093100' => 'ghi', 'Gohir.D09G102200' => 'ghi', 'Gohir.D09G102300' => 'ghi', 'Gorai.001G129400' => 'gra', 'Gorai.004G008200' => 'gra', 'Gorai.006G109800' => 'gra', 'Gorai.006G119500' => 'gra', 'Gorai.006G121300' => 'gra', 'Gorai.010G180700' => 'gra', 'GSVIVG01012716001' => 'vvi', 'GSVIVG01025118001' => 'vvi', 'GSVIVG01030439001' => 'vvi', 'GSVIVG01031397001' => 'vvi', 'HanXRQChr01g0004201' => 'han', 'HanXRQChr02g0054941' => 'han', 'HanXRQChr05g0141811' => 'han', 'HanXRQChr07g0197751' => 'han', 'HanXRQChr11g0346691' => 'han', 'HanXRQChr13g0396971' => 'han', 'HanXRQChr14g0432951' => 'han', 'HanXRQChr14g0452001' => 'han', 'HanXRQChr15g0496681' => 'han', 'HanXRQChr17g0557491' => 'han', 'HanXRQChr17g0557501' => 'han', 'Haze_06809' => 'cav', 'Haze_12852' => 'cav', 'Haze_15850' => 'cav', 'Haze_23446' => 'cav', 'Haze_23942' => 'cav', 'Haze_23943' => 'cav', 'Hma1.2p1_0091F.1_g046450' => 'hma', 'Hma1.2p1_0128F.1_g059910' => 'hma', 'Hma1.2p1_0249F.1_g102260' => 'hma', 'Hma1.2p1_0453F.1_g156190' => 'hma', 'Hma1.2p1_0695F.1_g204380' => 'hma', 'Hma1.2p1_0749F.1_g212650' => 'hma', 'Hma1.2p1_2156F.1_g315420' => 'hma', 'Hma1.2p1_2686F.1_g326940' => 'hma', 'HPP92_006428' => 'vpl', 'HPP92_012069' => 'vpl', 'HPP92_014129' => 'vpl', 'HPP92_014133' => 'vpl', 'HPP92_017315' => 'vpl', 'HPP92_026445' => 'vpl', 'HPP92_026446' => 'vpl', 'Hund00774' => 'sun', 'Hund07682' => 'sun', 'Hund21413' => 'sun', 'Hund23462' => 'sun', 'Hund23463' => 'sun', 'Lalb_Chr03g0027911' => 'lal', 'Lalb_Chr13g0304271' => 'lal', 'Lalb_Chr19g0137471' => 'lal', 'Lalb_Chr22g0350651' => 'lal', 'Lalb_Chr24g0395151' => 'lal', 'Lj1A1231T40' => 'lonja', 'Lj1A221T48' => 'lonja', 'Lj1C924T12' => 'lonja', 'Lj2C993G6' => 'lonja', 'Lj3g0005790' => 'lja', 'Lj3g0015432' => 'lja', 'Lj3g0017722' => 'lja', 'Lj3g0018497' => 'lja', 'Lj4g0025071' => 'lja', 'Lsat_1_v5_gn_1_129680' => 'lsa', 'Lsat_1_v5_gn_2_25321' => 'lsa', 'Lsat_1_v5_gn_2_95461' => 'lsa', 'Lsat_1_v5_gn_4_159620' => 'lsa', 'Lsat_1_v5_gn_6_41301' => 'lsa', 'Lsat_1_v5_gn_6_74660' => 'lsa', 'Lsat_1_v5_gn_7_11520' => 'lsa', 'Lsat_1_v5_gn_9_67680' => 'lsa', 'Manes.04G008300' => 'mes', 'Manes.04G008400' => 'mes', 'Manes.04G026500' => 'mes', 'Manes.10G135300' => 'mes', 'Manes.11G157300' => 'mes', 'Manes.12G074000' => 'mes', 'Manes.16G006200' => 'mes', 'Manes.17G026400' => 'mes', 'Mapoly0024s0086' => 'mpo', 'Mapoly0024s0087' => 'mpo', 'Mapoly0071s0057' => 'mpo', 'Mapoly0204s0012' => 'mpo', 'MBI04_g37681_MAGBIO' => 'mbi', 'MBI05_g17779_MAGBIO' => 'mbi', 'MBI12_g31184_MAGBIO' => 'mbi', 'MBI17_g11083_MAGBIO' => 'mbi', 'MBI18_g03883_MAGBIO' => 'mbi', 'MBI18_g28940_MAGBIO' => 'mbi', 'MCO01G690' => 'mco', 'MD03G1109900' => 'mdo', 'MD03G1134800' => 'mdo', 'MD05G1348000' => 'mdo', 'MD10G1322400' => 'mdo', 'MD11G1123300' => 'mdo', 'MD11G1157600' => 'mdo', 'Medtr2g084875' => 'mtr', 'Medtr2g088130' => 'mtr', 'Medtr4g055310' => 'mtr', 'Medtr4g061070' => 'mtr', 'Medtr4g132250' => 'mtr', 'MELO3C004795.2' => 'cme', 'MELO3C004797.2' => 'cme', 'MELO3C007396.2' => 'cme', 'MELO3C019277.2' => 'cme', 'MELO3C021449.2' => 'cme', 'MELO3C025736.2' => 'cme', 'Migut.D02175' => 'egut', 'Migut.H01573' => 'egut', 'Migut.M01327' => 'egut', 'Migut.N02513' => 'egut', 'MSTRG.14638' => 'ama', 'MSTRG.18632' => 'ama', 'MSTRG.7203' => 'ama', 'Nitab4.5_0000533g0140' => 'nta', 'Nitab4.5_0000888g0150' => 'nta', 'Nitab4.5_0001453g0040' => 'nta', 'Nitab4.5_0002827g0090' => 'nta', 'Nitab4.5_0003082g0040' => 'nta', 'Nitab4.5_0007799g0040' => 'nta', 'Nitab4.5_0008983g0010' => 'nta', 'Nitab4.5_0009017g0020' => 'nta', 'Nn1g02132' => 'nnu', 'Nn1g03492' => 'nnu', 'Nn1g03493' => 'nnu', 'Nn1g03494' => 'nnu', 'Nn1g07164' => 'nnu', 'Nn1g07291' => 'nnu', 'Nn2g10655' => 'nnu', 'Nn2g11652' => 'nnu', 'Nn2g14008' => 'nnu', 'Nn3g17476' => 'nnu', 'Nn3g17477' => 'nnu', 'Nn4g22370' => 'nnu', 'Nn4g25255' => 'nnu', 'Nn5g27755' => 'nnu', 'Nn6g34260' => 'nnu', 'Nn6g35041' => 'nnu', 'Oeu005924.1' => 'oeu', 'Oeu008383.1' => 'oeu', 'Oeu014928.1' => 'oeu', 'Oeu019889.1' => 'oeu', 'Oeu022271.1' => 'oeu', 'Oeu025271.1' => 'oeu', 'Oeu036302.1' => 'oeu', 'Oeu044100.1' => 'oeu', 'Os01g0528300' => 'osa', 'Os03g0286200' => 'osa', 'Os04g0406600' => 'osa', 'Os07g0512000' => 'osa', 'Os07g0694600' => 'osa', 'Os08g0411000' => 'osa', 'Os09g0565700' => 'osa', 'Os09g0566050' => 'osa', 'Os10g0523700' => 'osa', 'Peaxi162Scf00002g00514' => 'pax', 'Peaxi162Scf00047g01817' => 'pax', 'Peaxi162Scf00114g00001' => 'pax', 'Peaxi162Scf00147g00613' => 'pax', 'Peaxi162Scf00389g00425' => 'pax', 'PGR042G1139' => 'pgr', 'PGR042G3273' => 'pgr', 'PGR102G2180' => 'pgr', 'PGR119G0234' => 'pgr', 'PGR119G0668' => 'pgr', 'PGSC0003DMG400007122' => 'stu', 'PGSC0003DMG400016478' => 'stu', 'PGSC0003DMG400025374' => 'stu', 'PGSC0003DMG400026536' => 'stu', 'Phvul.003G079600' => 'pvu', 'Phvul.005G115600' => 'pvu', 'Phvul.005G127100' => 'pvu', 'Phvul.006G149500' => 'pvu', 'Phvul.006G149600' => 'pvu', 'Phvul.011G071800' => 'pvu', 'Phvul.011G090400' => 'pvu', 'Potri.004G013400' => 'ptr', 'Potri.004G188100' => 'ptr', 'Potri.008G195500' => 'ptr', 'Potri.009G148800' => 'ptr', 'Potri.011G004700' => 'ptr', 'Pp3c17_22810' => 'ppa', 'Pp3c18_4480' => 'ppa', 'Pp3c19_13030' => 'ppa', 'Pp3c1_33620' => 'ppa', 'Pp3c2_9380' => 'ppa', 'PRCOL_00001023' => 'pco', 'Prupe.3G216300' => 'ppe', 'Prupe.4G019500' => 'ppe', 'Prupe.6G092500' => 'ppe', 'Prupe.6G119200' => 'ppe', 'Psat0s1945g0080' => 'psa', 'Psat0s4167g0040' => 'psa', 'Psat1g185800' => 'psa', 'Psat4g006440' => 'psa', 'Psat4g006480' => 'psa', 'Psat4g168120' => 'psa', 'Psat5g255680' => 'psa', 'Psat5g261760' => 'psa', 'Psat7g222120' => 'psa', 'PSO063G7252' => 'pso', 'PSO170G4778' => 'pso', 'PSO210G2249' => 'pso', 'PSO339G2411' => 'pso', 'PSO339G2457' => 'pso', 'PSO339G2854' => 'pso', 'PSO339G4288' => 'pso', 'PSO339G4615' => 'pso', 'PSO384G2796' => 'pso', 'PSO384G2940' => 'pso', 'PSO384G4227' => 'pso', 'PSO478G1425' => 'pso', 'PSO541G3863' => 'pso', 'PSO675G0507' => 'pso', 'PSO782G0338' => 'pso', 'PSO832G0644' => 'pso', 'QL01p013664' => 'qlo', 'QL01p036598' => 'qlo', 'QL05p072984' => 'qlo', 'QL08p005768' => 'qlo', 'QL08p032743' => 'qlo', 'QL93p0073_0439' => 'qlo', 'QL93p0073_0444' => 'qlo', 'RcHm_v2.0_Chr5g0002851' => 'rch', 'RcHm_v2.0_Chr5g0055201' => 'rch', 'RcHm_v2.0_Chr5g0061191' => 'rch', 'RcHm_v2.0_Chr7g0203231' => 'rch', 'Rhsim01G0208100' => 'rsi', 'Rhsim01G0208200' => 'rsi', 'Rhsim02G0106500' => 'rsi', 'Rhsim03G0107900' => 'rsi', 'Rhsim06G0163400' => 'rsi', 'Rhsim13G0105200' => 'rsi', 'Sabra04G0006300' => 'sbr', 'Sabra04G0127000' => 'sbr', 'Sabra08G0148700' => 'sbr', 'Sabra09G0117400' => 'sbr', 'SalBow1G3326' => 'sbo', 'SalBow3G3228' => 'sbo', 'SalBow6G1634' => 'sbo', 'SalBow6G3603' => 'sbo', 'SalBow6G5266' => 'sbo', 'SalBow7G2265' => 'sbo', 'SalBow8G0850' => 'sbo', 'SalBow8G2592' => 'sbo', 'Sc05g0009240' => 'sci', 'Sc12g0002300' => 'sci', 'Sc21g0000100' => 'sci', 'Sc21g0004720' => 'sci', 'Sed0002949' => 'sed', 'Sed0004114' => 'sed', 'Sed0004306' => 'sed', 'Sed0006172' => 'sed', 'Sed0008413' => 'sed', 'Sed0013809' => 'sed', 'Sed0019556' => 'sed', 'SEGI_03570' => 'sgi', 'SEGI_07859' => 'sgi', 'SEGI_15042' => 'sgi', 'SEGI_16263' => 'sgi', 'SEGI_16552' => 'sgi', 'SEGI_24331' => 'sgi', 'SEGI_27316' => 'sgi', 'SEGI_29521' => 'sgi', 'SEGI_41342' => 'sgi', 'SGA_v2.0_scaffold27G11617' => 'sas', 'SGA_v2.0_scaffold316G48428' => 'sas', 'SGA_v2.0_scaffold49G18261' => 'sas', 'SGA_v2.0_scaffold7G03831' => 'sas', 'SGA_v2.0_scaffold93G28359' => 'sas', 'SHI02210' => 'shi', 'SHI06028' => 'shi', 'SHI06321' => 'shi', 'SMO111G0012' => 'smo', 'SMO228G0080' => 'smo', 'SMO356G0756' => 'smo', 'Solyc02g080620.3' => 'sly', 'Solyc06g074530.1' => 'sly', 'Solyc11g066890.1' => 'sly', 'Solyc11g072520.3' => 'sly', 'Sopen02g025330' => 'spe', 'Sopen06g031000' => 'spe', 'Sopen09g008240' => 'spe', 'Sopen09g025210' => 'spe', 'Sopen11g026600' => 'spe', 'Sopen11g030170' => 'spe', 'Sp1g10420' => 'spa', 'Sp3g06570' => 'spa', 'Sp4g10660' => 'spa', 'Sp5g16460' => 'spa', 'Sp6g22710' => 'spa', 'TAR365G0112' => 'tar', 'TAR369G0717' => 'tar', 'TAR374G0976' => 'tar', 'TAR623G1128' => 'tar', 'TAR626G1937' => 'tar', 'TAR627G0123' => 'tar', 'TAR628G0305' => 'tar', 'TAR636G1176' => 'tar', 'TAR636G2442' => 'tar', 'THA.LOC104800556' => 'tha', 'THA.LOC104809501' => 'tha', 'THA.LOC104815126' => 'tha', 'THA.LOC104815732' => 'tha', 'THA.LOC104823528' => 'tha', 'Thecc.02G365600' => 'tca', 'Thecc.06G222300' => 'tca', 'Thecc.09G261800' => 'tca', 'Thecc.09G291400' => 'tca', 'Thhalv10003028m.g' => 'esa', 'Thhalv10007886m.g' => 'esa', 'Thhalv10016085m.g' => 'esa', 'Thhalv10016681m.g' => 'esa', 'Thhalv10020951m.g' => 'esa', 'TPR.G15598' => 'tpr', 'TPR.G29305' => 'tpr', 'TPR.G32395' => 'tpr', 'TPR.G36998' => 'tpr', 'TPR.G4227' => 'tpr', 'TWI18G1433' => 'twi', 'TWI31G0755' => 'twi', 'TWI38G0912' => 'twi', 'TWI75G1097' => 'twi', 'TWI75G1619' => 'twi', 'TWI79G1336' => 'twi', 'unitig_0.g943' => 'ugi', 'unitig_0.g944' => 'ugi', 'unitig_22.g6646' => 'ugi', 'unitig_37.g12681' => 'ugi', 'unitig_8.g3290' => 'ugi', 'vmacro03278' => 'vma', 'vmacro12197' => 'vma', 'vmacro14478' => 'vma', 'vmacro15787' => 'vma', 'vmacro15789' => 'vma', 'vmacro15790' => 'vma', 'vmacro15806' => 'vma', 'vmacro22907' => 'vma', 'vmacro22908' => 'vma', 'vmacro22909' => 'vma', 'vmacro23108' => 'vma', 'VMungo0540G0540' => 'vmu', 'VMungo0540G2468' => 'vmu', 'VMungo1080G0390' => 'vmu', 'VMungo1080G1165' => 'vmu', 'VMungo1127G0170' => 'vmu', 'VMungo1127G2099' => 'vmu', 'VMungo1215G3013' => 'vmu', 'Zm00001eb013110' => 'zma', 'Zm00001eb084260' => 'zma', 'Zm00001eb096110' => 'zma', 'Zm00001eb217510' => 'zma', 'Zm00001eb322550' => 'zma', 'Zm00001eb390770' => 'zma', 'Zm00001eb397170' => 'zma', 'Zm00001eb404610' => 'zma', 'Zm00001eb421790' => 'zma' ), 'gf_id' => 'HOM05D000911', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000911' ), 'data_identifier' => 'HOM05D000911', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000911', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27780' => 'bna', 'A03p35380' => 'bna', 'A04p21160' => 'bna', 'A05p40570' => 'bna', 'A06p26900' => 'bna', 'A08p33230' => 'bna', 'A09p65960' => 'bna', 'A10p18290' => 'bna', 'Aa31LG1G12990' => 'aar', 'Aa31LG1G2980' => 'aar', 'Aa31LG4G14320' => 'aar', 'Aa31LG7G11800' => 'aar', 'Aa31sc36G50' => 'aar', 'Aa31sc36G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3721' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5459' => 'aag', 'Actinidia03028' => 'ach', 'Actinidia03753' => 'ach', 'Actinidia04187' => 'ach', 'Actinidia05509' => 'ach', 'Actinidia24180' => 'ach', 'Actinidia26906' => 'ach', 'Actinidia37097' => 'ach', 'Actinidia38249' => 'ach', 'Ah.01g003470' => 'amhyb', 'Ah.01g004580' => 'amhyb', 'Ah.01g014850' => 'amhyb', 'Ah.01g016830' => 'amhyb', 'Ah.14g088000' => 'amhyb', 'AL1G22980' => 'aly', 'AL3G18990' => 'aly', 'AL4G22440' => 'aly', 'AL4G33180' => 'aly', 'AL5G22920' => 'aly', 'AL6G33660' => 'aly', 'AL8G20720' => 'aly', 'Aqoxy1G00935' => 'aox', 'Aqoxy1G02094' => 'aox', 'Aqoxy2G01239' => 'aox', 'Aqoxy4G01870' => 'aox', 'Aqoxy7G00450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.36ZVTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71EM27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5D6C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH3WRE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3NCM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RIM768' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YB5YRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z36GDV' => 'arhy', 'AT1G08250' => 'ath', 'AT1G11790' => 'ath', 'AT2G27820' => 'ath', 'AT3G07630' => 'ath', 'AT3G44720' => 'ath', 'AT5G22630' => 'ath', 'ATR0693G304' => 'atr', 'ATR0794G109' => 'atr', 'ATR0820G120' => 'atr', 'ATR1159G064' => 'atr', 'Atru.chr10.2239' => 'acertr', 'Atru.chr3.3371' => 'acertr', 'Atru.chr6.3202' => 'acertr', 'AUR62006499' => 'cqu', 'AUR62012718' => 'cqu', 'AUR62021938' => 'cqu', 'AUR62023932' => 'cqu', 'AUR62025034' => 'cqu', 'AUR62025035' => 'cqu', 'AUR62038307' => 'cqu', 'AUR62043466' => 'cqu', 'BcaB02g10748' => 'bca', 'BcaB03g13231' => 'bca', 'BcaB03g14689' => 'bca', 'BcaB05g22716' => 'bca', 'BcaB06g28172' => 'bca', 'BcaB08g36413' => 'bca', 'BcaC01g02186' => 'bca', 'BcaC01g04272' => 'bca', 'BcaC02g08080' => 'bca', 'BcaC02g08227' => 'bca', 'BcaC03g13901' => 'bca', 'BcaC04g19593' => 'bca', 'BcaC04g20874' => 'bca', 'BcaC05g29557' => 'bca', 'BcaC06g35505' => 'bca', 'BcaC07g41954' => 'bca', 'BcaC07g41955' => 'bca', 'BcaC07g41956' => 'bca', 'BcaC07g42519' => 'bca', 'BcaC07g42520' => 'bca', 'BcaC07g42523' => 'bca', 'BcaC07g42524' => 'bca', 'BcaC07g42525' => 'bca', 'BcaC08g47480' => 'bca', 'BcaC08g47481' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00530' => 'bna', 'BolC2t07178H' => 'bol', 'BolC3t16567H' => 'bol', 'BolC4t27234H' => 'bol', 'BolC5t29728H' => 'bol', 'BolC5t34622H' => 'bol', 'BolC6t40321H' => 'bol', 'BolC7t42028H' => 'bol', 'BolC8t49125H' => 'bol', 'BolC8t52538H' => 'bol', 'BolC8t52539H' => 'bol', 'BolC9t56681H' => 'bol', 'BolC9t58266H' => 'bol', 'BolSC21t60294H' => 'bol', 'BraA02t05670Z' => 'bra', 'BraA03t12716Z' => 'bra', 'BraA04t17685Z' => 'bra', 'BraA05t22788Z' => 'bra', 'BraA06t24032Z' => 'bra', 'BraA06t25625Z' => 'bra', 'BraA07t27930Z' => 'bra', 'BraA08t35242Z' => 'bra', 'BraA09t38609Z' => 'bra', 'BraA10t43905Z' => 'bra', 'C02p11060' => 'bna', 'C03p42990' => 'bna', 'C03p67310' => 'bna', 'C04p56990' => 'bna', 'C04p58660' => 'bna', 'C05p09890' => 'bna', 'C05p59680' => 'bna', 'C06p19830' => 'bna', 'C06p53040' => 'bna', 'C07p15230' => 'bna', 'C08p50070' => 'bna', 'C08p50090' => 'bna', 'C09p38330' => 'bna', 'C09p53940' => 'bna', 'CAN.G1014.1' => 'can', 'CAN.G644.30' => 'can', 'CAN.G84.47' => 'can', 'CAN.G919.8' => 'can', 'CANSAT54G0113' => 'cansat', 'CANSAT54G1286' => 'cansat', 'CANSAT64G1020' => 'cansat', 'CARHR008080' => 'chi', 'CARHR008090' => 'chi', 'CARHR012130' => 'chi', 'CARHR038390' => 'chi', 'CARHR082330' => 'chi', 'CARHR120520' => 'chi', 'CARHR151470' => 'chi', 'CARHR190950' => 'chi', 'Carub.0001s0760' => 'cru', 'Carub.0001s1146' => 'cru', 'Carub.0003s0721' => 'cru', 'Carub.0004s0858' => 'cru', 'Carub.0005s1040' => 'cru', 'Carub.0006s2035' => 'cru', 'Carub.0015s0005' => 'cru', 'Ca_01607_v3' => 'car', 'Ca_01677_v3' => 'car', 'Ca_06087_v3' => 'car', 'Ca_19238_v3' => 'car', 'Ca_19373_v3' => 'car', 'Ca_21079_v3' => 'car', 'CBR_g54016' => 'cbr', 'CBR_g54018' => 'cbr', 'CBR_g54020' => 'cbr', 'Cc01_g09780' => 'ccan', 'Cc01_g11680' => 'ccan', 'Cc02_g15610' => 'ccan', 'Cc05_g04350' => 'ccan', 'Cc09_g01580' => 'ccan', 'CDE01G0795' => 'cde', 'CDE02G2024' => 'cde', 'CDE02G2260' => 'cde', 'CDE02G4561' => 'cde', 'CDE05G2733' => 'cde', 'CDE05G3422' => 'cde', 'CDE06G2003' => 'cde', 'CDE08G0576' => 'cde', 'CDE09G0048' => 'cde', 'CDE11G0805' => 'cde', 'Cfa003644' => 'cfa', 'Cfa006290' => 'cfa', 'Cfa010080' => 'cfa', 'Cfa011376' => 'cfa', 'Cfa011576' => 'cfa', 'Cfa011577' => 'cfa', 'Cfa014389' => 'cfa', 'Ciclev10006044m.g' => 'ccl', 'Ciclev10006954m.g' => 'ccl', 'Ciclev10015131m.g' => 'ccl', 'Ciclev10015580m.g' => 'ccl', 'Ciclev10028359m.g' => 'ccl', 'Ciclev10028573m.g' => 'ccl', 'CiPaw.03G159300' => 'cil', 'CiPaw.04G115100' => 'cil', 'CiPaw.09G092800' => 'cil', 'CiPaw.10G071800' => 'cil', 'CiPaw.13G105800' => 'cil', 'CiPaw.13G141000' => 'cil', 'CiPaw.14G103400' => 'cil', 'ClCG01G012700' => 'cla', 'ClCG01G012720' => 'cla', 'ClCG01G021920' => 'cla', 'ClCG02G008870' => 'cla', 'ClCG02G020840' => 'cla', 'ClCG02G021930' => 'cla', 'COL.COLO4_19302' => 'col', 'COL.COLO4_25262' => 'col', 'COL.COLO4_31788' => 'col', 'Cpa.g.c34684' => 'cpa', 'Cpa.g.c36520.1' => 'cpa', 'Cpa.g.c45626' => 'cpa', 'Cpa.g.sc121.17' => 'cpa', 'Cpa.g.sc13.22' => 'cpa', 'Cpa.g.sc87.88' => 'cpa', 'Cre06.g261800' => 'cre', 'CsaV3_1G014500' => 'csa', 'CsaV3_1G014510' => 'csa', 'CsaV3_2G034880' => 'csa', 'CsaV3_6G014760' => 'csa', 'CsaV3_6G021500' => 'csa', 'CsaV3_6G048980' => 'csa', 'CSS0002511' => 'camsi', 'CSS0007556' => 'camsi', 'CSS0008532' => 'camsi', 'CSS0009709' => 'camsi', 'CSS0010486' => 'camsi', 'CSS0016768' => 'camsi', 'CSS0023512' => 'camsi', 'CSS0025341' => 'camsi', 'CSS0027999' => 'camsi', 'CSS0028944' => 'camsi', 'CSS0032292' => 'camsi', 'CSS0032464' => 'camsi', 'CSS0037153' => 'camsi', 'CSS0039256' => 'camsi', 'CSS0048392' => 'camsi', 'CSS0050458' => 'camsi', 'DCAR_004224' => 'dca', 'DCAR_006147' => 'dca', 'DCAR_006465' => 'dca', 'DCAR_008159' => 'dca', 'DCAR_012164' => 'dca', 'DCAR_019764' => 'dca', 'Dinv05418' => 'din', 'Dinv10839' => 'din', 'Dinv12521' => 'din', 'Dinv13900' => 'din', 'Dinv29426' => 'din', 'Duzib150G0263' => 'dzi', 'Duzib168G1178' => 'dzi', 'Duzib168G1924' => 'dzi', 'Duzib170G0299' => 'dzi', 'Duzib170G0813' => 'dzi', 'Duzib235G1128' => 'dzi', 'Duzib248G1060' => 'dzi', 'ECA232G1910' => 'eca', 'ECA233G4621' => 'eca', 'ECA238G1216' => 'eca', 'ECA238G1784' => 'eca', 'ECA248G1242' => 'eca', 'EL10Ac8g20071' => 'bvu', 'EL10Ac9g21086' => 'bvu', 'EL10Ac9g22407' => 'bvu', 'EL10Ac9g22412' => 'bvu', 'Eucgr.A01119' => 'egr', 'Eucgr.E04043' => 'egr', 'Eucgr.J00428' => 'egr', 'Eucgr.J00958' => 'egr', 'FAN11G3091' => 'fan', 'FAN11G3651' => 'fan', 'FAN16G2566' => 'fan', 'FAN21G3155' => 'fan', 'FAN21G3400' => 'fan', 'FAN21G3543' => 'fan', 'FAN25G0234' => 'fan', 'FAN25G1422' => 'fan', 'FAN25G3392' => 'fan', 'FvH4_3g01940' => 'fve', 'FvH4_3g29870' => 'fve', 'FvH4_3g33680' => 'fve', 'Glyma.09G004200' => 'gma', 'Glyma.11G151288' => 'gma', 'Glyma.11G189100' => 'gma', 'Glyma.12G072500' => 'gma', 'Glyma.12G085500' => 'gma', 'Glyma.12G181800' => 'gma', 'Glyma.12G193000' => 'gma', 'Glyma.13G309300' => 'gma', 'Glyma.13G319000' => 'gma', 'Glyma.17G012600' => 'gma', 'Gohir.A06G148600' => 'ghi', 'Gohir.A07G115800' => 'ghi', 'Gohir.A08G003600' => 'ghi', 'Gohir.A09G093300' => 'ghi', 'Gohir.A09G105400' => 'ghi', 'Gohir.A09G105500' => 'ghi', 'Gohir.D06G154600' => 'ghi', 'Gohir.D07G120200' => 'ghi', 'Gohir.D08G013900' => 'ghi', 'Gohir.D09G093100' => 'ghi', 'Gohir.D09G102200' => 'ghi', 'Gohir.D09G102300' => 'ghi', 'Gorai.001G129400' => 'gra', 'Gorai.004G008200' => 'gra', 'Gorai.006G109800' => 'gra', 'Gorai.006G119500' => 'gra', 'Gorai.006G121300' => 'gra', 'Gorai.010G180700' => 'gra', 'GSVIVG01012716001' => 'vvi', 'GSVIVG01025118001' => 'vvi', 'GSVIVG01030439001' => 'vvi', 'GSVIVG01031397001' => 'vvi', 'HanXRQChr01g0004201' => 'han', 'HanXRQChr02g0054941' => 'han', 'HanXRQChr05g0141811' => 'han', 'HanXRQChr07g0197751' => 'han', 'HanXRQChr11g0346691' => 'han', 'HanXRQChr13g0396971' => 'han', 'HanXRQChr14g0432951' => 'han', 'HanXRQChr14g0452001' => 'han', 'HanXRQChr15g0496681' => 'han', 'HanXRQChr17g0557491' => 'han', 'HanXRQChr17g0557501' => 'han', 'Haze_06809' => 'cav', 'Haze_12852' => 'cav', 'Haze_15850' => 'cav', 'Haze_23446' => 'cav', 'Haze_23942' => 'cav', 'Haze_23943' => 'cav', 'Hma1.2p1_0091F.1_g046450' => 'hma', 'Hma1.2p1_0128F.1_g059910' => 'hma', 'Hma1.2p1_0249F.1_g102260' => 'hma', 'Hma1.2p1_0453F.1_g156190' => 'hma', 'Hma1.2p1_0695F.1_g204380' => 'hma', 'Hma1.2p1_0749F.1_g212650' => 'hma', 'Hma1.2p1_2156F.1_g315420' => 'hma', 'Hma1.2p1_2686F.1_g326940' => 'hma', 'HPP92_006428' => 'vpl', 'HPP92_012069' => 'vpl', 'HPP92_014129' => 'vpl', 'HPP92_014133' => 'vpl', 'HPP92_017315' => 'vpl', 'HPP92_026445' => 'vpl', 'HPP92_026446' => 'vpl', 'Hund00774' => 'sun', 'Hund07682' => 'sun', 'Hund21413' => 'sun', 'Hund23462' => 'sun', 'Hund23463' => 'sun', 'Lalb_Chr03g0027911' => 'lal', 'Lalb_Chr13g0304271' => 'lal', 'Lalb_Chr19g0137471' => 'lal', 'Lalb_Chr22g0350651' => 'lal', 'Lalb_Chr24g0395151' => 'lal', 'Lj1A1231T40' => 'lonja', 'Lj1A221T48' => 'lonja', 'Lj1C924T12' => 'lonja', 'Lj2C993G6' => 'lonja', 'Lj3g0005790' => 'lja', 'Lj3g0015432' => 'lja', 'Lj3g0017722' => 'lja', 'Lj3g0018497' => 'lja', 'Lj4g0025071' => 'lja', 'Lsat_1_v5_gn_1_129680' => 'lsa', 'Lsat_1_v5_gn_2_25321' => 'lsa', 'Lsat_1_v5_gn_2_95461' => 'lsa', 'Lsat_1_v5_gn_4_159620' => 'lsa', 'Lsat_1_v5_gn_6_41301' => 'lsa', 'Lsat_1_v5_gn_6_74660' => 'lsa', 'Lsat_1_v5_gn_7_11520' => 'lsa', 'Lsat_1_v5_gn_9_67680' => 'lsa', 'Manes.04G008300' => 'mes', 'Manes.04G008400' => 'mes', 'Manes.04G026500' => 'mes', 'Manes.10G135300' => 'mes', 'Manes.11G157300' => 'mes', 'Manes.12G074000' => 'mes', 'Manes.16G006200' => 'mes', 'Manes.17G026400' => 'mes', 'Mapoly0024s0086' => 'mpo', 'Mapoly0024s0087' => 'mpo', 'Mapoly0071s0057' => 'mpo', 'Mapoly0204s0012' => 'mpo', 'MBI04_g37681_MAGBIO' => 'mbi', 'MBI05_g17779_MAGBIO' => 'mbi', 'MBI12_g31184_MAGBIO' => 'mbi', 'MBI17_g11083_MAGBIO' => 'mbi', 'MBI18_g03883_MAGBIO' => 'mbi', 'MBI18_g28940_MAGBIO' => 'mbi', 'MCO01G690' => 'mco', 'MD03G1109900' => 'mdo', 'MD03G1134800' => 'mdo', 'MD05G1348000' => 'mdo', 'MD10G1322400' => 'mdo', 'MD11G1123300' => 'mdo', 'MD11G1157600' => 'mdo', 'Medtr2g084875' => 'mtr', 'Medtr2g088130' => 'mtr', 'Medtr4g055310' => 'mtr', 'Medtr4g061070' => 'mtr', 'Medtr4g132250' => 'mtr', 'MELO3C004795.2' => 'cme', 'MELO3C004797.2' => 'cme', 'MELO3C007396.2' => 'cme', 'MELO3C019277.2' => 'cme', 'MELO3C021449.2' => 'cme', 'MELO3C025736.2' => 'cme', 'Migut.D02175' => 'egut', 'Migut.H01573' => 'egut', 'Migut.M01327' => 'egut', 'Migut.N02513' => 'egut', 'MSTRG.14638' => 'ama', 'MSTRG.18632' => 'ama', 'MSTRG.7203' => 'ama', 'Nitab4.5_0000533g0140' => 'nta', 'Nitab4.5_0000888g0150' => 'nta', 'Nitab4.5_0001453g0040' => 'nta', 'Nitab4.5_0002827g0090' => 'nta', 'Nitab4.5_0003082g0040' => 'nta', 'Nitab4.5_0007799g0040' => 'nta', 'Nitab4.5_0008983g0010' => 'nta', 'Nitab4.5_0009017g0020' => 'nta', 'Nn1g02132' => 'nnu', 'Nn1g03492' => 'nnu', 'Nn1g03493' => 'nnu', 'Nn1g03494' => 'nnu', 'Nn1g07164' => 'nnu', 'Nn1g07291' => 'nnu', 'Nn2g10655' => 'nnu', 'Nn2g11652' => 'nnu', 'Nn2g14008' => 'nnu', 'Nn3g17476' => 'nnu', 'Nn3g17477' => 'nnu', 'Nn4g22370' => 'nnu', 'Nn4g25255' => 'nnu', 'Nn5g27755' => 'nnu', 'Nn6g34260' => 'nnu', 'Nn6g35041' => 'nnu', 'Oeu005924.1' => 'oeu', 'Oeu008383.1' => 'oeu', 'Oeu014928.1' => 'oeu', 'Oeu019889.1' => 'oeu', 'Oeu022271.1' => 'oeu', 'Oeu025271.1' => 'oeu', 'Oeu036302.1' => 'oeu', 'Oeu044100.1' => 'oeu', 'Os01g0528300' => 'osa', 'Os03g0286200' => 'osa', 'Os04g0406600' => 'osa', 'Os07g0512000' => 'osa', 'Os07g0694600' => 'osa', 'Os08g0411000' => 'osa', 'Os09g0565700' => 'osa', 'Os09g0566050' => 'osa', 'Os10g0523700' => 'osa', 'Peaxi162Scf00002g00514' => 'pax', 'Peaxi162Scf00047g01817' => 'pax', 'Peaxi162Scf00114g00001' => 'pax', 'Peaxi162Scf00147g00613' => 'pax', 'Peaxi162Scf00389g00425' => 'pax', 'PGR042G1139' => 'pgr', 'PGR042G3273' => 'pgr', 'PGR102G2180' => 'pgr', 'PGR119G0234' => 'pgr', 'PGR119G0668' => 'pgr', 'PGSC0003DMG400007122' => 'stu', 'PGSC0003DMG400016478' => 'stu', 'PGSC0003DMG400025374' => 'stu', 'PGSC0003DMG400026536' => 'stu', 'Phvul.003G079600' => 'pvu', 'Phvul.005G115600' => 'pvu', 'Phvul.005G127100' => 'pvu', 'Phvul.006G149500' => 'pvu', 'Phvul.006G149600' => 'pvu', 'Phvul.011G071800' => 'pvu', 'Phvul.011G090400' => 'pvu', 'Potri.004G013400' => 'ptr', 'Potri.004G188100' => 'ptr', 'Potri.008G195500' => 'ptr', 'Potri.009G148800' => 'ptr', 'Potri.011G004700' => 'ptr', 'Pp3c17_22810' => 'ppa', 'Pp3c18_4480' => 'ppa', 'Pp3c19_13030' => 'ppa', 'Pp3c1_33620' => 'ppa', 'Pp3c2_9380' => 'ppa', 'PRCOL_00001023' => 'pco', 'Prupe.3G216300' => 'ppe', 'Prupe.4G019500' => 'ppe', 'Prupe.6G092500' => 'ppe', 'Prupe.6G119200' => 'ppe', 'Psat0s1945g0080' => 'psa', 'Psat0s4167g0040' => 'psa', 'Psat1g185800' => 'psa', 'Psat4g006440' => 'psa', 'Psat4g006480' => 'psa', 'Psat4g168120' => 'psa', 'Psat5g255680' => 'psa', 'Psat5g261760' => 'psa', 'Psat7g222120' => 'psa', 'PSO063G7252' => 'pso', 'PSO170G4778' => 'pso', 'PSO210G2249' => 'pso', 'PSO339G2411' => 'pso', 'PSO339G2457' => 'pso', 'PSO339G2854' => 'pso', 'PSO339G4288' => 'pso', 'PSO339G4615' => 'pso', 'PSO384G2796' => 'pso', 'PSO384G2940' => 'pso', 'PSO384G4227' => 'pso', 'PSO478G1425' => 'pso', 'PSO541G3863' => 'pso', 'PSO675G0507' => 'pso', 'PSO782G0338' => 'pso', 'PSO832G0644' => 'pso', 'QL01p013664' => 'qlo', 'QL01p036598' => 'qlo', 'QL05p072984' => 'qlo', 'QL08p005768' => 'qlo', 'QL08p032743' => 'qlo', 'QL93p0073_0439' => 'qlo', 'QL93p0073_0444' => 'qlo', 'RcHm_v2.0_Chr5g0002851' => 'rch', 'RcHm_v2.0_Chr5g0055201' => 'rch', 'RcHm_v2.0_Chr5g0061191' => 'rch', 'RcHm_v2.0_Chr7g0203231' => 'rch', 'Rhsim01G0208100' => 'rsi', 'Rhsim01G0208200' => 'rsi', 'Rhsim02G0106500' => 'rsi', 'Rhsim03G0107900' => 'rsi', 'Rhsim06G0163400' => 'rsi', 'Rhsim13G0105200' => 'rsi', 'Sabra04G0006300' => 'sbr', 'Sabra04G0127000' => 'sbr', 'Sabra08G0148700' => 'sbr', 'Sabra09G0117400' => 'sbr', 'SalBow1G3326' => 'sbo', 'SalBow3G3228' => 'sbo', 'SalBow6G1634' => 'sbo', 'SalBow6G3603' => 'sbo', 'SalBow6G5266' => 'sbo', 'SalBow7G2265' => 'sbo', 'SalBow8G0850' => 'sbo', 'SalBow8G2592' => 'sbo', 'Sc05g0009240' => 'sci', 'Sc12g0002300' => 'sci', 'Sc21g0000100' => 'sci', 'Sc21g0004720' => 'sci', 'Sed0002949' => 'sed', 'Sed0004114' => 'sed', 'Sed0004306' => 'sed', 'Sed0006172' => 'sed', 'Sed0008413' => 'sed', 'Sed0013809' => 'sed', 'Sed0019556' => 'sed', 'SEGI_03570' => 'sgi', 'SEGI_07859' => 'sgi', 'SEGI_15042' => 'sgi', 'SEGI_16263' => 'sgi', 'SEGI_16552' => 'sgi', 'SEGI_24331' => 'sgi', 'SEGI_27316' => 'sgi', 'SEGI_29521' => 'sgi', 'SEGI_41342' => 'sgi', 'SGA_v2.0_scaffold27G11617' => 'sas', 'SGA_v2.0_scaffold316G48428' => 'sas', 'SGA_v2.0_scaffold49G18261' => 'sas', 'SGA_v2.0_scaffold7G03831' => 'sas', 'SGA_v2.0_scaffold93G28359' => 'sas', 'SHI02210' => 'shi', 'SHI06028' => 'shi', 'SHI06321' => 'shi', 'SMO111G0012' => 'smo', 'SMO228G0080' => 'smo', 'SMO356G0756' => 'smo', 'Solyc02g080620.3' => 'sly', 'Solyc06g074530.1' => 'sly', 'Solyc11g066890.1' => 'sly', 'Solyc11g072520.3' => 'sly', 'Sopen02g025330' => 'spe', 'Sopen06g031000' => 'spe', 'Sopen09g008240' => 'spe', 'Sopen09g025210' => 'spe', 'Sopen11g026600' => 'spe', 'Sopen11g030170' => 'spe', 'Sp1g10420' => 'spa', 'Sp3g06570' => 'spa', 'Sp4g10660' => 'spa', 'Sp5g16460' => 'spa', 'Sp6g22710' => 'spa', 'TAR365G0112' => 'tar', 'TAR369G0717' => 'tar', 'TAR374G0976' => 'tar', 'TAR623G1128' => 'tar', 'TAR626G1937' => 'tar', 'TAR627G0123' => 'tar', 'TAR628G0305' => 'tar', 'TAR636G1176' => 'tar', 'TAR636G2442' => 'tar', 'THA.LOC104800556' => 'tha', 'THA.LOC104809501' => 'tha', 'THA.LOC104815126' => 'tha', 'THA.LOC104815732' => 'tha', 'THA.LOC104823528' => 'tha', 'Thecc.02G365600' => 'tca', 'Thecc.06G222300' => 'tca', 'Thecc.09G261800' => 'tca', 'Thecc.09G291400' => 'tca', 'Thhalv10003028m.g' => 'esa', 'Thhalv10007886m.g' => 'esa', 'Thhalv10016085m.g' => 'esa', 'Thhalv10016681m.g' => 'esa', 'Thhalv10020951m.g' => 'esa', 'TPR.G15598' => 'tpr', 'TPR.G29305' => 'tpr', 'TPR.G32395' => 'tpr', 'TPR.G36998' => 'tpr', 'TPR.G4227' => 'tpr', 'TWI18G1433' => 'twi', 'TWI31G0755' => 'twi', 'TWI38G0912' => 'twi', 'TWI75G1097' => 'twi', 'TWI75G1619' => 'twi', 'TWI79G1336' => 'twi', 'unitig_0.g943' => 'ugi', 'unitig_0.g944' => 'ugi', 'unitig_22.g6646' => 'ugi', 'unitig_37.g12681' => 'ugi', 'unitig_8.g3290' => 'ugi', 'vmacro03278' => 'vma', 'vmacro12197' => 'vma', 'vmacro14478' => 'vma', 'vmacro15787' => 'vma', 'vmacro15789' => 'vma', 'vmacro15790' => 'vma', 'vmacro15806' => 'vma', 'vmacro22907' => 'vma', 'vmacro22908' => 'vma', 'vmacro22909' => 'vma', 'vmacro23108' => 'vma', 'VMungo0540G0540' => 'vmu', 'VMungo0540G2468' => 'vmu', 'VMungo1080G0390' => 'vmu', 'VMungo1080G1165' => 'vmu', 'VMungo1127G0170' => 'vmu', 'VMungo1127G2099' => 'vmu', 'VMungo1215G3013' => 'vmu', 'Zm00001eb013110' => 'zma', 'Zm00001eb084260' => 'zma', 'Zm00001eb096110' => 'zma', 'Zm00001eb217510' => 'zma', 'Zm00001eb322550' => 'zma', 'Zm00001eb390770' => 'zma', 'Zm00001eb397170' => 'zma', 'Zm00001eb404610' => 'zma', 'Zm00001eb421790' => 'zma' ) $gf_id = 'HOM05D000911' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000911' ) $data_identifier = 'HOM05D000911' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 16, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 5, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 6, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 8, 'nnu' => (int) 16, 'oeu' => (int) 8, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 5, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 16, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421790' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000911', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27780' => 'bna', 'A03p35380' => 'bna', 'A04p21160' => 'bna', 'A05p40570' => 'bna', 'A06p26900' => 'bna', 'A08p33230' => 'bna', 'A09p65960' => 'bna', 'A10p18290' => 'bna', 'Aa31LG1G12990' => 'aar', 'Aa31LG1G2980' => 'aar', 'Aa31LG4G14320' => 'aar', 'Aa31LG7G11800' => 'aar', 'Aa31sc36G50' => 'aar', 'Aa31sc36G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3721' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5459' => 'aag', 'Actinidia03028' => 'ach', 'Actinidia03753' => 'ach', 'Actinidia04187' => 'ach', 'Actinidia05509' => 'ach', 'Actinidia24180' => 'ach', 'Actinidia26906' => 'ach', 'Actinidia37097' => 'ach', 'Actinidia38249' => 'ach', 'Ah.01g003470' => 'amhyb', 'Ah.01g004580' => 'amhyb', 'Ah.01g014850' => 'amhyb', 'Ah.01g016830' => 'amhyb', 'Ah.14g088000' => 'amhyb', 'AL1G22980' => 'aly', 'AL3G18990' => 'aly', 'AL4G22440' => 'aly', 'AL4G33180' => 'aly', 'AL5G22920' => 'aly', 'AL6G33660' => 'aly', 'AL8G20720' => 'aly', 'Aqoxy1G00935' => 'aox', 'Aqoxy1G02094' => 'aox', 'Aqoxy2G01239' => 'aox', 'Aqoxy4G01870' => 'aox', 'Aqoxy7G00450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.36ZVTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71EM27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5D6C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH3WRE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3NCM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RIM768' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YB5YRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z36GDV' => 'arhy', 'AT1G08250' => 'ath', 'AT1G11790' => 'ath', 'AT2G27820' => 'ath', 'AT3G07630' => 'ath', 'AT3G44720' => 'ath', 'AT5G22630' => 'ath', 'ATR0693G304' => 'atr', 'ATR0794G109' => 'atr', 'ATR0820G120' => 'atr', 'ATR1159G064' => 'atr', 'Atru.chr10.2239' => 'acertr', 'Atru.chr3.3371' => 'acertr', 'Atru.chr6.3202' => 'acertr', 'AUR62006499' => 'cqu', 'AUR62012718' => 'cqu', 'AUR62021938' => 'cqu', 'AUR62023932' => 'cqu', 'AUR62025034' => 'cqu', 'AUR62025035' => 'cqu', 'AUR62038307' => 'cqu', 'AUR62043466' => 'cqu', 'BcaB02g10748' => 'bca', 'BcaB03g13231' => 'bca', 'BcaB03g14689' => 'bca', 'BcaB05g22716' => 'bca', 'BcaB06g28172' => 'bca', 'BcaB08g36413' => 'bca', 'BcaC01g02186' => 'bca', 'BcaC01g04272' => 'bca', 'BcaC02g08080' => 'bca', 'BcaC02g08227' => 'bca', 'BcaC03g13901' => 'bca', 'BcaC04g19593' => 'bca', 'BcaC04g20874' => 'bca', 'BcaC05g29557' => 'bca', 'BcaC06g35505' => 'bca', 'BcaC07g41954' => 'bca', 'BcaC07g41955' => 'bca', 'BcaC07g41956' => 'bca', 'BcaC07g42519' => 'bca', 'BcaC07g42520' => 'bca', 'BcaC07g42523' => 'bca', 'BcaC07g42524' => 'bca', 'BcaC07g42525' => 'bca', 'BcaC08g47480' => 'bca', 'BcaC08g47481' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00530' => 'bna', 'BolC2t07178H' => 'bol', 'BolC3t16567H' => 'bol', 'BolC4t27234H' => 'bol', 'BolC5t29728H' => 'bol', 'BolC5t34622H' => 'bol', 'BolC6t40321H' => 'bol', 'BolC7t42028H' => 'bol', 'BolC8t49125H' => 'bol', 'BolC8t52538H' => 'bol', 'BolC8t52539H' => 'bol', 'BolC9t56681H' => 'bol', 'BolC9t58266H' => 'bol', 'BolSC21t60294H' => 'bol', 'BraA02t05670Z' => 'bra', 'BraA03t12716Z' => 'bra', 'BraA04t17685Z' => 'bra', 'BraA05t22788Z' => 'bra', 'BraA06t24032Z' => 'bra', 'BraA06t25625Z' => 'bra', 'BraA07t27930Z' => 'bra', 'BraA08t35242Z' => 'bra', 'BraA09t38609Z' => 'bra', 'BraA10t43905Z' => 'bra', 'C02p11060' => 'bna', 'C03p42990' => 'bna', 'C03p67310' => 'bna', 'C04p56990' => 'bna', 'C04p58660' => 'bna', 'C05p09890' => 'bna', 'C05p59680' => 'bna', 'C06p19830' => 'bna', 'C06p53040' => 'bna', 'C07p15230' => 'bna', 'C08p50070' => 'bna', 'C08p50090' => 'bna', 'C09p38330' => 'bna', 'C09p53940' => 'bna', 'CAN.G1014.1' => 'can', 'CAN.G644.30' => 'can', 'CAN.G84.47' => 'can', 'CAN.G919.8' => 'can', 'CANSAT54G0113' => 'cansat', 'CANSAT54G1286' => 'cansat', 'CANSAT64G1020' => 'cansat', 'CARHR008080' => 'chi', 'CARHR008090' => 'chi', 'CARHR012130' => 'chi', 'CARHR038390' => 'chi', 'CARHR082330' => 'chi', 'CARHR120520' => 'chi', 'CARHR151470' => 'chi', 'CARHR190950' => 'chi', 'Carub.0001s0760' => 'cru', 'Carub.0001s1146' => 'cru', 'Carub.0003s0721' => 'cru', 'Carub.0004s0858' => 'cru', 'Carub.0005s1040' => 'cru', 'Carub.0006s2035' => 'cru', 'Carub.0015s0005' => 'cru', 'Ca_01607_v3' => 'car', 'Ca_01677_v3' => 'car', 'Ca_06087_v3' => 'car', 'Ca_19238_v3' => 'car', 'Ca_19373_v3' => 'car', 'Ca_21079_v3' => 'car', 'CBR_g54016' => 'cbr', 'CBR_g54018' => 'cbr', 'CBR_g54020' => 'cbr', 'Cc01_g09780' => 'ccan', 'Cc01_g11680' => 'ccan', 'Cc02_g15610' => 'ccan', 'Cc05_g04350' => 'ccan', 'Cc09_g01580' => 'ccan', 'CDE01G0795' => 'cde', 'CDE02G2024' => 'cde', 'CDE02G2260' => 'cde', 'CDE02G4561' => 'cde', 'CDE05G2733' => 'cde', 'CDE05G3422' => 'cde', 'CDE06G2003' => 'cde', 'CDE08G0576' => 'cde', 'CDE09G0048' => 'cde', 'CDE11G0805' => 'cde', 'Cfa003644' => 'cfa', 'Cfa006290' => 'cfa', 'Cfa010080' => 'cfa', 'Cfa011376' => 'cfa', 'Cfa011576' => 'cfa', 'Cfa011577' => 'cfa', 'Cfa014389' => 'cfa', 'Ciclev10006044m.g' => 'ccl', 'Ciclev10006954m.g' => 'ccl', 'Ciclev10015131m.g' => 'ccl', 'Ciclev10015580m.g' => 'ccl', 'Ciclev10028359m.g' => 'ccl', 'Ciclev10028573m.g' => 'ccl', 'CiPaw.03G159300' => 'cil', 'CiPaw.04G115100' => 'cil', 'CiPaw.09G092800' => 'cil', 'CiPaw.10G071800' => 'cil', 'CiPaw.13G105800' => 'cil', 'CiPaw.13G141000' => 'cil', 'CiPaw.14G103400' => 'cil', 'ClCG01G012700' => 'cla', 'ClCG01G012720' => 'cla', 'ClCG01G021920' => 'cla', 'ClCG02G008870' => 'cla', 'ClCG02G020840' => 'cla', 'ClCG02G021930' => 'cla', 'COL.COLO4_19302' => 'col', 'COL.COLO4_25262' => 'col', 'COL.COLO4_31788' => 'col', 'Cpa.g.c34684' => 'cpa', 'Cpa.g.c36520.1' => 'cpa', 'Cpa.g.c45626' => 'cpa', 'Cpa.g.sc121.17' => 'cpa', 'Cpa.g.sc13.22' => 'cpa', 'Cpa.g.sc87.88' => 'cpa', 'Cre06.g261800' => 'cre', 'CsaV3_1G014500' => 'csa', 'CsaV3_1G014510' => 'csa', 'CsaV3_2G034880' => 'csa', 'CsaV3_6G014760' => 'csa', 'CsaV3_6G021500' => 'csa', 'CsaV3_6G048980' => 'csa', 'CSS0002511' => 'camsi', 'CSS0007556' => 'camsi', 'CSS0008532' => 'camsi', 'CSS0009709' => 'camsi', 'CSS0010486' => 'camsi', 'CSS0016768' => 'camsi', 'CSS0023512' => 'camsi', 'CSS0025341' => 'camsi', 'CSS0027999' => 'camsi', 'CSS0028944' => 'camsi', 'CSS0032292' => 'camsi', 'CSS0032464' => 'camsi', 'CSS0037153' => 'camsi', 'CSS0039256' => 'camsi', 'CSS0048392' => 'camsi', 'CSS0050458' => 'camsi', 'DCAR_004224' => 'dca', 'DCAR_006147' => 'dca', 'DCAR_006465' => 'dca', 'DCAR_008159' => 'dca', 'DCAR_012164' => 'dca', 'DCAR_019764' => 'dca', 'Dinv05418' => 'din', 'Dinv10839' => 'din', 'Dinv12521' => 'din', 'Dinv13900' => 'din', 'Dinv29426' => 'din', 'Duzib150G0263' => 'dzi', 'Duzib168G1178' => 'dzi', 'Duzib168G1924' => 'dzi', 'Duzib170G0299' => 'dzi', 'Duzib170G0813' => 'dzi', 'Duzib235G1128' => 'dzi', 'Duzib248G1060' => 'dzi', 'ECA232G1910' => 'eca', 'ECA233G4621' => 'eca', 'ECA238G1216' => 'eca', 'ECA238G1784' => 'eca', 'ECA248G1242' => 'eca', 'EL10Ac8g20071' => 'bvu', 'EL10Ac9g21086' => 'bvu', 'EL10Ac9g22407' => 'bvu', 'EL10Ac9g22412' => 'bvu', 'Eucgr.A01119' => 'egr', 'Eucgr.E04043' => 'egr', 'Eucgr.J00428' => 'egr', 'Eucgr.J00958' => 'egr', 'FAN11G3091' => 'fan', 'FAN11G3651' => 'fan', 'FAN16G2566' => 'fan', 'FAN21G3155' => 'fan', 'FAN21G3400' => 'fan', 'FAN21G3543' => 'fan', 'FAN25G0234' => 'fan', 'FAN25G1422' => 'fan', 'FAN25G3392' => 'fan', 'FvH4_3g01940' => 'fve', 'FvH4_3g29870' => 'fve', 'FvH4_3g33680' => 'fve', 'Glyma.09G004200' => 'gma', 'Glyma.11G151288' => 'gma', 'Glyma.11G189100' => 'gma', 'Glyma.12G072500' => 'gma', 'Glyma.12G085500' => 'gma', 'Glyma.12G181800' => 'gma', 'Glyma.12G193000' => 'gma', 'Glyma.13G309300' => 'gma', 'Glyma.13G319000' => 'gma', 'Glyma.17G012600' => 'gma', 'Gohir.A06G148600' => 'ghi', 'Gohir.A07G115800' => 'ghi', 'Gohir.A08G003600' => 'ghi', 'Gohir.A09G093300' => 'ghi', 'Gohir.A09G105400' => 'ghi', 'Gohir.A09G105500' => 'ghi', 'Gohir.D06G154600' => 'ghi', 'Gohir.D07G120200' => 'ghi', 'Gohir.D08G013900' => 'ghi', 'Gohir.D09G093100' => 'ghi', 'Gohir.D09G102200' => 'ghi', 'Gohir.D09G102300' => 'ghi', 'Gorai.001G129400' => 'gra', 'Gorai.004G008200' => 'gra', 'Gorai.006G109800' => 'gra', 'Gorai.006G119500' => 'gra', 'Gorai.006G121300' => 'gra', 'Gorai.010G180700' => 'gra', 'GSVIVG01012716001' => 'vvi', 'GSVIVG01025118001' => 'vvi', 'GSVIVG01030439001' => 'vvi', 'GSVIVG01031397001' => 'vvi', 'HanXRQChr01g0004201' => 'han', 'HanXRQChr02g0054941' => 'han', 'HanXRQChr05g0141811' => 'han', 'HanXRQChr07g0197751' => 'han', 'HanXRQChr11g0346691' => 'han', 'HanXRQChr13g0396971' => 'han', 'HanXRQChr14g0432951' => 'han', 'HanXRQChr14g0452001' => 'han', 'HanXRQChr15g0496681' => 'han', 'HanXRQChr17g0557491' => 'han', 'HanXRQChr17g0557501' => 'han', 'Haze_06809' => 'cav', 'Haze_12852' => 'cav', 'Haze_15850' => 'cav', 'Haze_23446' => 'cav', 'Haze_23942' => 'cav', 'Haze_23943' => 'cav', 'Hma1.2p1_0091F.1_g046450' => 'hma', 'Hma1.2p1_0128F.1_g059910' => 'hma', 'Hma1.2p1_0249F.1_g102260' => 'hma', 'Hma1.2p1_0453F.1_g156190' => 'hma', 'Hma1.2p1_0695F.1_g204380' => 'hma', 'Hma1.2p1_0749F.1_g212650' => 'hma', 'Hma1.2p1_2156F.1_g315420' => 'hma', 'Hma1.2p1_2686F.1_g326940' => 'hma', 'HPP92_006428' => 'vpl', 'HPP92_012069' => 'vpl', 'HPP92_014129' => 'vpl', 'HPP92_014133' => 'vpl', 'HPP92_017315' => 'vpl', 'HPP92_026445' => 'vpl', 'HPP92_026446' => 'vpl', 'Hund00774' => 'sun', 'Hund07682' => 'sun', 'Hund21413' => 'sun', 'Hund23462' => 'sun', 'Hund23463' => 'sun', 'Lalb_Chr03g0027911' => 'lal', 'Lalb_Chr13g0304271' => 'lal', 'Lalb_Chr19g0137471' => 'lal', 'Lalb_Chr22g0350651' => 'lal', 'Lalb_Chr24g0395151' => 'lal', 'Lj1A1231T40' => 'lonja', 'Lj1A221T48' => 'lonja', 'Lj1C924T12' => 'lonja', 'Lj2C993G6' => 'lonja', 'Lj3g0005790' => 'lja', 'Lj3g0015432' => 'lja', 'Lj3g0017722' => 'lja', 'Lj3g0018497' => 'lja', 'Lj4g0025071' => 'lja', 'Lsat_1_v5_gn_1_129680' => 'lsa', 'Lsat_1_v5_gn_2_25321' => 'lsa', 'Lsat_1_v5_gn_2_95461' => 'lsa', 'Lsat_1_v5_gn_4_159620' => 'lsa', 'Lsat_1_v5_gn_6_41301' => 'lsa', 'Lsat_1_v5_gn_6_74660' => 'lsa', 'Lsat_1_v5_gn_7_11520' => 'lsa', 'Lsat_1_v5_gn_9_67680' => 'lsa', 'Manes.04G008300' => 'mes', 'Manes.04G008400' => 'mes', 'Manes.04G026500' => 'mes', 'Manes.10G135300' => 'mes', 'Manes.11G157300' => 'mes', 'Manes.12G074000' => 'mes', 'Manes.16G006200' => 'mes', 'Manes.17G026400' => 'mes', 'Mapoly0024s0086' => 'mpo', 'Mapoly0024s0087' => 'mpo', 'Mapoly0071s0057' => 'mpo', 'Mapoly0204s0012' => 'mpo', 'MBI04_g37681_MAGBIO' => 'mbi', 'MBI05_g17779_MAGBIO' => 'mbi', 'MBI12_g31184_MAGBIO' => 'mbi', 'MBI17_g11083_MAGBIO' => 'mbi', 'MBI18_g03883_MAGBIO' => 'mbi', 'MBI18_g28940_MAGBIO' => 'mbi', 'MCO01G690' => 'mco', 'MD03G1109900' => 'mdo', 'MD03G1134800' => 'mdo', 'MD05G1348000' => 'mdo', 'MD10G1322400' => 'mdo', 'MD11G1123300' => 'mdo', 'MD11G1157600' => 'mdo', 'Medtr2g084875' => 'mtr', 'Medtr2g088130' => 'mtr', 'Medtr4g055310' => 'mtr', 'Medtr4g061070' => 'mtr', 'Medtr4g132250' => 'mtr', 'MELO3C004795.2' => 'cme', 'MELO3C004797.2' => 'cme', 'MELO3C007396.2' => 'cme', 'MELO3C019277.2' => 'cme', 'MELO3C021449.2' => 'cme', 'MELO3C025736.2' => 'cme', 'Migut.D02175' => 'egut', 'Migut.H01573' => 'egut', 'Migut.M01327' => 'egut', 'Migut.N02513' => 'egut', 'MSTRG.14638' => 'ama', 'MSTRG.18632' => 'ama', 'MSTRG.7203' => 'ama', 'Nitab4.5_0000533g0140' => 'nta', 'Nitab4.5_0000888g0150' => 'nta', 'Nitab4.5_0001453g0040' => 'nta', 'Nitab4.5_0002827g0090' => 'nta', 'Nitab4.5_0003082g0040' => 'nta', 'Nitab4.5_0007799g0040' => 'nta', 'Nitab4.5_0008983g0010' => 'nta', 'Nitab4.5_0009017g0020' => 'nta', 'Nn1g02132' => 'nnu', 'Nn1g03492' => 'nnu', 'Nn1g03493' => 'nnu', 'Nn1g03494' => 'nnu', 'Nn1g07164' => 'nnu', 'Nn1g07291' => 'nnu', 'Nn2g10655' => 'nnu', 'Nn2g11652' => 'nnu', 'Nn2g14008' => 'nnu', 'Nn3g17476' => 'nnu', 'Nn3g17477' => 'nnu', 'Nn4g22370' => 'nnu', 'Nn4g25255' => 'nnu', 'Nn5g27755' => 'nnu', 'Nn6g34260' => 'nnu', 'Nn6g35041' => 'nnu', 'Oeu005924.1' => 'oeu', 'Oeu008383.1' => 'oeu', 'Oeu014928.1' => 'oeu', 'Oeu019889.1' => 'oeu', 'Oeu022271.1' => 'oeu', 'Oeu025271.1' => 'oeu', 'Oeu036302.1' => 'oeu', 'Oeu044100.1' => 'oeu', 'Os01g0528300' => 'osa', 'Os03g0286200' => 'osa', 'Os04g0406600' => 'osa', 'Os07g0512000' => 'osa', 'Os07g0694600' => 'osa', 'Os08g0411000' => 'osa', 'Os09g0565700' => 'osa', 'Os09g0566050' => 'osa', 'Os10g0523700' => 'osa', 'Peaxi162Scf00002g00514' => 'pax', 'Peaxi162Scf00047g01817' => 'pax', 'Peaxi162Scf00114g00001' => 'pax', 'Peaxi162Scf00147g00613' => 'pax', 'Peaxi162Scf00389g00425' => 'pax', 'PGR042G1139' => 'pgr', 'PGR042G3273' => 'pgr', 'PGR102G2180' => 'pgr', 'PGR119G0234' => 'pgr', 'PGR119G0668' => 'pgr', 'PGSC0003DMG400007122' => 'stu', 'PGSC0003DMG400016478' => 'stu', 'PGSC0003DMG400025374' => 'stu', 'PGSC0003DMG400026536' => 'stu', 'Phvul.003G079600' => 'pvu', 'Phvul.005G115600' => 'pvu', 'Phvul.005G127100' => 'pvu', 'Phvul.006G149500' => 'pvu', 'Phvul.006G149600' => 'pvu', 'Phvul.011G071800' => 'pvu', 'Phvul.011G090400' => 'pvu', 'Potri.004G013400' => 'ptr', 'Potri.004G188100' => 'ptr', 'Potri.008G195500' => 'ptr', 'Potri.009G148800' => 'ptr', 'Potri.011G004700' => 'ptr', 'Pp3c17_22810' => 'ppa', 'Pp3c18_4480' => 'ppa', 'Pp3c19_13030' => 'ppa', 'Pp3c1_33620' => 'ppa', 'Pp3c2_9380' => 'ppa', 'PRCOL_00001023' => 'pco', 'Prupe.3G216300' => 'ppe', 'Prupe.4G019500' => 'ppe', 'Prupe.6G092500' => 'ppe', 'Prupe.6G119200' => 'ppe', 'Psat0s1945g0080' => 'psa', 'Psat0s4167g0040' => 'psa', 'Psat1g185800' => 'psa', 'Psat4g006440' => 'psa', 'Psat4g006480' => 'psa', 'Psat4g168120' => 'psa', 'Psat5g255680' => 'psa', 'Psat5g261760' => 'psa', 'Psat7g222120' => 'psa', 'PSO063G7252' => 'pso', 'PSO170G4778' => 'pso', 'PSO210G2249' => 'pso', 'PSO339G2411' => 'pso', 'PSO339G2457' => 'pso', 'PSO339G2854' => 'pso', 'PSO339G4288' => 'pso', 'PSO339G4615' => 'pso', 'PSO384G2796' => 'pso', 'PSO384G2940' => 'pso', 'PSO384G4227' => 'pso', 'PSO478G1425' => 'pso', 'PSO541G3863' => 'pso', 'PSO675G0507' => 'pso', 'PSO782G0338' => 'pso', 'PSO832G0644' => 'pso', 'QL01p013664' => 'qlo', 'QL01p036598' => 'qlo', 'QL05p072984' => 'qlo', 'QL08p005768' => 'qlo', 'QL08p032743' => 'qlo', 'QL93p0073_0439' => 'qlo', 'QL93p0073_0444' => 'qlo', 'RcHm_v2.0_Chr5g0002851' => 'rch', 'RcHm_v2.0_Chr5g0055201' => 'rch', 'RcHm_v2.0_Chr5g0061191' => 'rch', 'RcHm_v2.0_Chr7g0203231' => 'rch', 'Rhsim01G0208100' => 'rsi', 'Rhsim01G0208200' => 'rsi', 'Rhsim02G0106500' => 'rsi', 'Rhsim03G0107900' => 'rsi', 'Rhsim06G0163400' => 'rsi', 'Rhsim13G0105200' => 'rsi', 'Sabra04G0006300' => 'sbr', 'Sabra04G0127000' => 'sbr', 'Sabra08G0148700' => 'sbr', 'Sabra09G0117400' => 'sbr', 'SalBow1G3326' => 'sbo', 'SalBow3G3228' => 'sbo', 'SalBow6G1634' => 'sbo', 'SalBow6G3603' => 'sbo', 'SalBow6G5266' => 'sbo', 'SalBow7G2265' => 'sbo', 'SalBow8G0850' => 'sbo', 'SalBow8G2592' => 'sbo', 'Sc05g0009240' => 'sci', 'Sc12g0002300' => 'sci', 'Sc21g0000100' => 'sci', 'Sc21g0004720' => 'sci', 'Sed0002949' => 'sed', 'Sed0004114' => 'sed', 'Sed0004306' => 'sed', 'Sed0006172' => 'sed', 'Sed0008413' => 'sed', 'Sed0013809' => 'sed', 'Sed0019556' => 'sed', 'SEGI_03570' => 'sgi', 'SEGI_07859' => 'sgi', 'SEGI_15042' => 'sgi', 'SEGI_16263' => 'sgi', 'SEGI_16552' => 'sgi', 'SEGI_24331' => 'sgi', 'SEGI_27316' => 'sgi', 'SEGI_29521' => 'sgi', 'SEGI_41342' => 'sgi', 'SGA_v2.0_scaffold27G11617' => 'sas', 'SGA_v2.0_scaffold316G48428' => 'sas', 'SGA_v2.0_scaffold49G18261' => 'sas', 'SGA_v2.0_scaffold7G03831' => 'sas', 'SGA_v2.0_scaffold93G28359' => 'sas', 'SHI02210' => 'shi', 'SHI06028' => 'shi', 'SHI06321' => 'shi', 'SMO111G0012' => 'smo', 'SMO228G0080' => 'smo', 'SMO356G0756' => 'smo', 'Solyc02g080620.3' => 'sly', 'Solyc06g074530.1' => 'sly', 'Solyc11g066890.1' => 'sly', 'Solyc11g072520.3' => 'sly', 'Sopen02g025330' => 'spe', 'Sopen06g031000' => 'spe', 'Sopen09g008240' => 'spe', 'Sopen09g025210' => 'spe', 'Sopen11g026600' => 'spe', 'Sopen11g030170' => 'spe', 'Sp1g10420' => 'spa', 'Sp3g06570' => 'spa', 'Sp4g10660' => 'spa', 'Sp5g16460' => 'spa', 'Sp6g22710' => 'spa', 'TAR365G0112' => 'tar', 'TAR369G0717' => 'tar', 'TAR374G0976' => 'tar', 'TAR623G1128' => 'tar', 'TAR626G1937' => 'tar', 'TAR627G0123' => 'tar', 'TAR628G0305' => 'tar', 'TAR636G1176' => 'tar', 'TAR636G2442' => 'tar', 'THA.LOC104800556' => 'tha', 'THA.LOC104809501' => 'tha', 'THA.LOC104815126' => 'tha', 'THA.LOC104815732' => 'tha', 'THA.LOC104823528' => 'tha', 'Thecc.02G365600' => 'tca', 'Thecc.06G222300' => 'tca', 'Thecc.09G261800' => 'tca', 'Thecc.09G291400' => 'tca', 'Thhalv10003028m.g' => 'esa', 'Thhalv10007886m.g' => 'esa', 'Thhalv10016085m.g' => 'esa', 'Thhalv10016681m.g' => 'esa', 'Thhalv10020951m.g' => 'esa', 'TPR.G15598' => 'tpr', 'TPR.G29305' => 'tpr', 'TPR.G32395' => 'tpr', 'TPR.G36998' => 'tpr', 'TPR.G4227' => 'tpr', 'TWI18G1433' => 'twi', 'TWI31G0755' => 'twi', 'TWI38G0912' => 'twi', 'TWI75G1097' => 'twi', 'TWI75G1619' => 'twi', 'TWI79G1336' => 'twi', 'unitig_0.g943' => 'ugi', 'unitig_0.g944' => 'ugi', 'unitig_22.g6646' => 'ugi', 'unitig_37.g12681' => 'ugi', 'unitig_8.g3290' => 'ugi', 'vmacro03278' => 'vma', 'vmacro12197' => 'vma', 'vmacro14478' => 'vma', 'vmacro15787' => 'vma', 'vmacro15789' => 'vma', 'vmacro15790' => 'vma', 'vmacro15806' => 'vma', 'vmacro22907' => 'vma', 'vmacro22908' => 'vma', 'vmacro22909' => 'vma', 'vmacro23108' => 'vma', 'VMungo0540G0540' => 'vmu', 'VMungo0540G2468' => 'vmu', 'VMungo1080G0390' => 'vmu', 'VMungo1080G1165' => 'vmu', 'VMungo1127G0170' => 'vmu', 'VMungo1127G2099' => 'vmu', 'VMungo1215G3013' => 'vmu', 'Zm00001eb013110' => 'zma', 'Zm00001eb084260' => 'zma', 'Zm00001eb096110' => 'zma', 'Zm00001eb217510' => 'zma', 'Zm00001eb322550' => 'zma', 'Zm00001eb390770' => 'zma', 'Zm00001eb397170' => 'zma', 'Zm00001eb404610' => 'zma', 'Zm00001eb421790' => 'zma' ), 'gf_id' => 'HOM05D000911', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000911' ), 'data_identifier' => 'HOM05D000911', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000911', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27780' => 'bna', 'A03p35380' => 'bna', 'A04p21160' => 'bna', 'A05p40570' => 'bna', 'A06p26900' => 'bna', 'A08p33230' => 'bna', 'A09p65960' => 'bna', 'A10p18290' => 'bna', 'Aa31LG1G12990' => 'aar', 'Aa31LG1G2980' => 'aar', 'Aa31LG4G14320' => 'aar', 'Aa31LG7G11800' => 'aar', 'Aa31sc36G50' => 'aar', 'Aa31sc36G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3721' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5459' => 'aag', 'Actinidia03028' => 'ach', 'Actinidia03753' => 'ach', 'Actinidia04187' => 'ach', 'Actinidia05509' => 'ach', 'Actinidia24180' => 'ach', 'Actinidia26906' => 'ach', 'Actinidia37097' => 'ach', 'Actinidia38249' => 'ach', 'Ah.01g003470' => 'amhyb', 'Ah.01g004580' => 'amhyb', 'Ah.01g014850' => 'amhyb', 'Ah.01g016830' => 'amhyb', 'Ah.14g088000' => 'amhyb', 'AL1G22980' => 'aly', 'AL3G18990' => 'aly', 'AL4G22440' => 'aly', 'AL4G33180' => 'aly', 'AL5G22920' => 'aly', 'AL6G33660' => 'aly', 'AL8G20720' => 'aly', 'Aqoxy1G00935' => 'aox', 'Aqoxy1G02094' => 'aox', 'Aqoxy2G01239' => 'aox', 'Aqoxy4G01870' => 'aox', 'Aqoxy7G00450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.36ZVTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71EM27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5D6C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH3WRE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3NCM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RIM768' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YB5YRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z36GDV' => 'arhy', 'AT1G08250' => 'ath', 'AT1G11790' => 'ath', 'AT2G27820' => 'ath', 'AT3G07630' => 'ath', 'AT3G44720' => 'ath', 'AT5G22630' => 'ath', 'ATR0693G304' => 'atr', 'ATR0794G109' => 'atr', 'ATR0820G120' => 'atr', 'ATR1159G064' => 'atr', 'Atru.chr10.2239' => 'acertr', 'Atru.chr3.3371' => 'acertr', 'Atru.chr6.3202' => 'acertr', 'AUR62006499' => 'cqu', 'AUR62012718' => 'cqu', 'AUR62021938' => 'cqu', 'AUR62023932' => 'cqu', 'AUR62025034' => 'cqu', 'AUR62025035' => 'cqu', 'AUR62038307' => 'cqu', 'AUR62043466' => 'cqu', 'BcaB02g10748' => 'bca', 'BcaB03g13231' => 'bca', 'BcaB03g14689' => 'bca', 'BcaB05g22716' => 'bca', 'BcaB06g28172' => 'bca', 'BcaB08g36413' => 'bca', 'BcaC01g02186' => 'bca', 'BcaC01g04272' => 'bca', 'BcaC02g08080' => 'bca', 'BcaC02g08227' => 'bca', 'BcaC03g13901' => 'bca', 'BcaC04g19593' => 'bca', 'BcaC04g20874' => 'bca', 'BcaC05g29557' => 'bca', 'BcaC06g35505' => 'bca', 'BcaC07g41954' => 'bca', 'BcaC07g41955' => 'bca', 'BcaC07g41956' => 'bca', 'BcaC07g42519' => 'bca', 'BcaC07g42520' => 'bca', 'BcaC07g42523' => 'bca', 'BcaC07g42524' => 'bca', 'BcaC07g42525' => 'bca', 'BcaC08g47480' => 'bca', 'BcaC08g47481' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00530' => 'bna', 'BolC2t07178H' => 'bol', 'BolC3t16567H' => 'bol', 'BolC4t27234H' => 'bol', 'BolC5t29728H' => 'bol', 'BolC5t34622H' => 'bol', 'BolC6t40321H' => 'bol', 'BolC7t42028H' => 'bol', 'BolC8t49125H' => 'bol', 'BolC8t52538H' => 'bol', 'BolC8t52539H' => 'bol', 'BolC9t56681H' => 'bol', 'BolC9t58266H' => 'bol', 'BolSC21t60294H' => 'bol', 'BraA02t05670Z' => 'bra', 'BraA03t12716Z' => 'bra', 'BraA04t17685Z' => 'bra', 'BraA05t22788Z' => 'bra', 'BraA06t24032Z' => 'bra', 'BraA06t25625Z' => 'bra', 'BraA07t27930Z' => 'bra', 'BraA08t35242Z' => 'bra', 'BraA09t38609Z' => 'bra', 'BraA10t43905Z' => 'bra', 'C02p11060' => 'bna', 'C03p42990' => 'bna', 'C03p67310' => 'bna', 'C04p56990' => 'bna', 'C04p58660' => 'bna', 'C05p09890' => 'bna', 'C05p59680' => 'bna', 'C06p19830' => 'bna', 'C06p53040' => 'bna', 'C07p15230' => 'bna', 'C08p50070' => 'bna', 'C08p50090' => 'bna', 'C09p38330' => 'bna', 'C09p53940' => 'bna', 'CAN.G1014.1' => 'can', 'CAN.G644.30' => 'can', 'CAN.G84.47' => 'can', 'CAN.G919.8' => 'can', 'CANSAT54G0113' => 'cansat', 'CANSAT54G1286' => 'cansat', 'CANSAT64G1020' => 'cansat', 'CARHR008080' => 'chi', 'CARHR008090' => 'chi', 'CARHR012130' => 'chi', 'CARHR038390' => 'chi', 'CARHR082330' => 'chi', 'CARHR120520' => 'chi', 'CARHR151470' => 'chi', 'CARHR190950' => 'chi', 'Carub.0001s0760' => 'cru', 'Carub.0001s1146' => 'cru', 'Carub.0003s0721' => 'cru', 'Carub.0004s0858' => 'cru', 'Carub.0005s1040' => 'cru', 'Carub.0006s2035' => 'cru', 'Carub.0015s0005' => 'cru', 'Ca_01607_v3' => 'car', 'Ca_01677_v3' => 'car', 'Ca_06087_v3' => 'car', 'Ca_19238_v3' => 'car', 'Ca_19373_v3' => 'car', 'Ca_21079_v3' => 'car', 'CBR_g54016' => 'cbr', 'CBR_g54018' => 'cbr', 'CBR_g54020' => 'cbr', 'Cc01_g09780' => 'ccan', 'Cc01_g11680' => 'ccan', 'Cc02_g15610' => 'ccan', 'Cc05_g04350' => 'ccan', 'Cc09_g01580' => 'ccan', 'CDE01G0795' => 'cde', 'CDE02G2024' => 'cde', 'CDE02G2260' => 'cde', 'CDE02G4561' => 'cde', 'CDE05G2733' => 'cde', 'CDE05G3422' => 'cde', 'CDE06G2003' => 'cde', 'CDE08G0576' => 'cde', 'CDE09G0048' => 'cde', 'CDE11G0805' => 'cde', 'Cfa003644' => 'cfa', 'Cfa006290' => 'cfa', 'Cfa010080' => 'cfa', 'Cfa011376' => 'cfa', 'Cfa011576' => 'cfa', 'Cfa011577' => 'cfa', 'Cfa014389' => 'cfa', 'Ciclev10006044m.g' => 'ccl', 'Ciclev10006954m.g' => 'ccl', 'Ciclev10015131m.g' => 'ccl', 'Ciclev10015580m.g' => 'ccl', 'Ciclev10028359m.g' => 'ccl', 'Ciclev10028573m.g' => 'ccl', 'CiPaw.03G159300' => 'cil', 'CiPaw.04G115100' => 'cil', 'CiPaw.09G092800' => 'cil', 'CiPaw.10G071800' => 'cil', 'CiPaw.13G105800' => 'cil', 'CiPaw.13G141000' => 'cil', 'CiPaw.14G103400' => 'cil', 'ClCG01G012700' => 'cla', 'ClCG01G012720' => 'cla', 'ClCG01G021920' => 'cla', 'ClCG02G008870' => 'cla', 'ClCG02G020840' => 'cla', 'ClCG02G021930' => 'cla', 'COL.COLO4_19302' => 'col', 'COL.COLO4_25262' => 'col', 'COL.COLO4_31788' => 'col', 'Cpa.g.c34684' => 'cpa', 'Cpa.g.c36520.1' => 'cpa', 'Cpa.g.c45626' => 'cpa', 'Cpa.g.sc121.17' => 'cpa', 'Cpa.g.sc13.22' => 'cpa', 'Cpa.g.sc87.88' => 'cpa', 'Cre06.g261800' => 'cre', 'CsaV3_1G014500' => 'csa', 'CsaV3_1G014510' => 'csa', 'CsaV3_2G034880' => 'csa', 'CsaV3_6G014760' => 'csa', 'CsaV3_6G021500' => 'csa', 'CsaV3_6G048980' => 'csa', 'CSS0002511' => 'camsi', 'CSS0007556' => 'camsi', 'CSS0008532' => 'camsi', 'CSS0009709' => 'camsi', 'CSS0010486' => 'camsi', 'CSS0016768' => 'camsi', 'CSS0023512' => 'camsi', 'CSS0025341' => 'camsi', 'CSS0027999' => 'camsi', 'CSS0028944' => 'camsi', 'CSS0032292' => 'camsi', 'CSS0032464' => 'camsi', 'CSS0037153' => 'camsi', 'CSS0039256' => 'camsi', 'CSS0048392' => 'camsi', 'CSS0050458' => 'camsi', 'DCAR_004224' => 'dca', 'DCAR_006147' => 'dca', 'DCAR_006465' => 'dca', 'DCAR_008159' => 'dca', 'DCAR_012164' => 'dca', 'DCAR_019764' => 'dca', 'Dinv05418' => 'din', 'Dinv10839' => 'din', 'Dinv12521' => 'din', 'Dinv13900' => 'din', 'Dinv29426' => 'din', 'Duzib150G0263' => 'dzi', 'Duzib168G1178' => 'dzi', 'Duzib168G1924' => 'dzi', 'Duzib170G0299' => 'dzi', 'Duzib170G0813' => 'dzi', 'Duzib235G1128' => 'dzi', 'Duzib248G1060' => 'dzi', 'ECA232G1910' => 'eca', 'ECA233G4621' => 'eca', 'ECA238G1216' => 'eca', 'ECA238G1784' => 'eca', 'ECA248G1242' => 'eca', 'EL10Ac8g20071' => 'bvu', 'EL10Ac9g21086' => 'bvu', 'EL10Ac9g22407' => 'bvu', 'EL10Ac9g22412' => 'bvu', 'Eucgr.A01119' => 'egr', 'Eucgr.E04043' => 'egr', 'Eucgr.J00428' => 'egr', 'Eucgr.J00958' => 'egr', 'FAN11G3091' => 'fan', 'FAN11G3651' => 'fan', 'FAN16G2566' => 'fan', 'FAN21G3155' => 'fan', 'FAN21G3400' => 'fan', 'FAN21G3543' => 'fan', 'FAN25G0234' => 'fan', 'FAN25G1422' => 'fan', 'FAN25G3392' => 'fan', 'FvH4_3g01940' => 'fve', 'FvH4_3g29870' => 'fve', 'FvH4_3g33680' => 'fve', 'Glyma.09G004200' => 'gma', 'Glyma.11G151288' => 'gma', 'Glyma.11G189100' => 'gma', 'Glyma.12G072500' => 'gma', 'Glyma.12G085500' => 'gma', 'Glyma.12G181800' => 'gma', 'Glyma.12G193000' => 'gma', 'Glyma.13G309300' => 'gma', 'Glyma.13G319000' => 'gma', 'Glyma.17G012600' => 'gma', 'Gohir.A06G148600' => 'ghi', 'Gohir.A07G115800' => 'ghi', 'Gohir.A08G003600' => 'ghi', 'Gohir.A09G093300' => 'ghi', 'Gohir.A09G105400' => 'ghi', 'Gohir.A09G105500' => 'ghi', 'Gohir.D06G154600' => 'ghi', 'Gohir.D07G120200' => 'ghi', 'Gohir.D08G013900' => 'ghi', 'Gohir.D09G093100' => 'ghi', 'Gohir.D09G102200' => 'ghi', 'Gohir.D09G102300' => 'ghi', 'Gorai.001G129400' => 'gra', 'Gorai.004G008200' => 'gra', 'Gorai.006G109800' => 'gra', 'Gorai.006G119500' => 'gra', 'Gorai.006G121300' => 'gra', 'Gorai.010G180700' => 'gra', 'GSVIVG01012716001' => 'vvi', 'GSVIVG01025118001' => 'vvi', 'GSVIVG01030439001' => 'vvi', 'GSVIVG01031397001' => 'vvi', 'HanXRQChr01g0004201' => 'han', 'HanXRQChr02g0054941' => 'han', 'HanXRQChr05g0141811' => 'han', 'HanXRQChr07g0197751' => 'han', 'HanXRQChr11g0346691' => 'han', 'HanXRQChr13g0396971' => 'han', 'HanXRQChr14g0432951' => 'han', 'HanXRQChr14g0452001' => 'han', 'HanXRQChr15g0496681' => 'han', 'HanXRQChr17g0557491' => 'han', 'HanXRQChr17g0557501' => 'han', 'Haze_06809' => 'cav', 'Haze_12852' => 'cav', 'Haze_15850' => 'cav', 'Haze_23446' => 'cav', 'Haze_23942' => 'cav', 'Haze_23943' => 'cav', 'Hma1.2p1_0091F.1_g046450' => 'hma', 'Hma1.2p1_0128F.1_g059910' => 'hma', 'Hma1.2p1_0249F.1_g102260' => 'hma', 'Hma1.2p1_0453F.1_g156190' => 'hma', 'Hma1.2p1_0695F.1_g204380' => 'hma', 'Hma1.2p1_0749F.1_g212650' => 'hma', 'Hma1.2p1_2156F.1_g315420' => 'hma', 'Hma1.2p1_2686F.1_g326940' => 'hma', 'HPP92_006428' => 'vpl', 'HPP92_012069' => 'vpl', 'HPP92_014129' => 'vpl', 'HPP92_014133' => 'vpl', 'HPP92_017315' => 'vpl', 'HPP92_026445' => 'vpl', 'HPP92_026446' => 'vpl', 'Hund00774' => 'sun', 'Hund07682' => 'sun', 'Hund21413' => 'sun', 'Hund23462' => 'sun', 'Hund23463' => 'sun', 'Lalb_Chr03g0027911' => 'lal', 'Lalb_Chr13g0304271' => 'lal', 'Lalb_Chr19g0137471' => 'lal', 'Lalb_Chr22g0350651' => 'lal', 'Lalb_Chr24g0395151' => 'lal', 'Lj1A1231T40' => 'lonja', 'Lj1A221T48' => 'lonja', 'Lj1C924T12' => 'lonja', 'Lj2C993G6' => 'lonja', 'Lj3g0005790' => 'lja', 'Lj3g0015432' => 'lja', 'Lj3g0017722' => 'lja', 'Lj3g0018497' => 'lja', 'Lj4g0025071' => 'lja', 'Lsat_1_v5_gn_1_129680' => 'lsa', 'Lsat_1_v5_gn_2_25321' => 'lsa', 'Lsat_1_v5_gn_2_95461' => 'lsa', 'Lsat_1_v5_gn_4_159620' => 'lsa', 'Lsat_1_v5_gn_6_41301' => 'lsa', 'Lsat_1_v5_gn_6_74660' => 'lsa', 'Lsat_1_v5_gn_7_11520' => 'lsa', 'Lsat_1_v5_gn_9_67680' => 'lsa', 'Manes.04G008300' => 'mes', 'Manes.04G008400' => 'mes', 'Manes.04G026500' => 'mes', 'Manes.10G135300' => 'mes', 'Manes.11G157300' => 'mes', 'Manes.12G074000' => 'mes', 'Manes.16G006200' => 'mes', 'Manes.17G026400' => 'mes', 'Mapoly0024s0086' => 'mpo', 'Mapoly0024s0087' => 'mpo', 'Mapoly0071s0057' => 'mpo', 'Mapoly0204s0012' => 'mpo', 'MBI04_g37681_MAGBIO' => 'mbi', 'MBI05_g17779_MAGBIO' => 'mbi', 'MBI12_g31184_MAGBIO' => 'mbi', 'MBI17_g11083_MAGBIO' => 'mbi', 'MBI18_g03883_MAGBIO' => 'mbi', 'MBI18_g28940_MAGBIO' => 'mbi', 'MCO01G690' => 'mco', 'MD03G1109900' => 'mdo', 'MD03G1134800' => 'mdo', 'MD05G1348000' => 'mdo', 'MD10G1322400' => 'mdo', 'MD11G1123300' => 'mdo', 'MD11G1157600' => 'mdo', 'Medtr2g084875' => 'mtr', 'Medtr2g088130' => 'mtr', 'Medtr4g055310' => 'mtr', 'Medtr4g061070' => 'mtr', 'Medtr4g132250' => 'mtr', 'MELO3C004795.2' => 'cme', 'MELO3C004797.2' => 'cme', 'MELO3C007396.2' => 'cme', 'MELO3C019277.2' => 'cme', 'MELO3C021449.2' => 'cme', 'MELO3C025736.2' => 'cme', 'Migut.D02175' => 'egut', 'Migut.H01573' => 'egut', 'Migut.M01327' => 'egut', 'Migut.N02513' => 'egut', 'MSTRG.14638' => 'ama', 'MSTRG.18632' => 'ama', 'MSTRG.7203' => 'ama', 'Nitab4.5_0000533g0140' => 'nta', 'Nitab4.5_0000888g0150' => 'nta', 'Nitab4.5_0001453g0040' => 'nta', 'Nitab4.5_0002827g0090' => 'nta', 'Nitab4.5_0003082g0040' => 'nta', 'Nitab4.5_0007799g0040' => 'nta', 'Nitab4.5_0008983g0010' => 'nta', 'Nitab4.5_0009017g0020' => 'nta', 'Nn1g02132' => 'nnu', 'Nn1g03492' => 'nnu', 'Nn1g03493' => 'nnu', 'Nn1g03494' => 'nnu', 'Nn1g07164' => 'nnu', 'Nn1g07291' => 'nnu', 'Nn2g10655' => 'nnu', 'Nn2g11652' => 'nnu', 'Nn2g14008' => 'nnu', 'Nn3g17476' => 'nnu', 'Nn3g17477' => 'nnu', 'Nn4g22370' => 'nnu', 'Nn4g25255' => 'nnu', 'Nn5g27755' => 'nnu', 'Nn6g34260' => 'nnu', 'Nn6g35041' => 'nnu', 'Oeu005924.1' => 'oeu', 'Oeu008383.1' => 'oeu', 'Oeu014928.1' => 'oeu', 'Oeu019889.1' => 'oeu', 'Oeu022271.1' => 'oeu', 'Oeu025271.1' => 'oeu', 'Oeu036302.1' => 'oeu', 'Oeu044100.1' => 'oeu', 'Os01g0528300' => 'osa', 'Os03g0286200' => 'osa', 'Os04g0406600' => 'osa', 'Os07g0512000' => 'osa', 'Os07g0694600' => 'osa', 'Os08g0411000' => 'osa', 'Os09g0565700' => 'osa', 'Os09g0566050' => 'osa', 'Os10g0523700' => 'osa', 'Peaxi162Scf00002g00514' => 'pax', 'Peaxi162Scf00047g01817' => 'pax', 'Peaxi162Scf00114g00001' => 'pax', 'Peaxi162Scf00147g00613' => 'pax', 'Peaxi162Scf00389g00425' => 'pax', 'PGR042G1139' => 'pgr', 'PGR042G3273' => 'pgr', 'PGR102G2180' => 'pgr', 'PGR119G0234' => 'pgr', 'PGR119G0668' => 'pgr', 'PGSC0003DMG400007122' => 'stu', 'PGSC0003DMG400016478' => 'stu', 'PGSC0003DMG400025374' => 'stu', 'PGSC0003DMG400026536' => 'stu', 'Phvul.003G079600' => 'pvu', 'Phvul.005G115600' => 'pvu', 'Phvul.005G127100' => 'pvu', 'Phvul.006G149500' => 'pvu', 'Phvul.006G149600' => 'pvu', 'Phvul.011G071800' => 'pvu', 'Phvul.011G090400' => 'pvu', 'Potri.004G013400' => 'ptr', 'Potri.004G188100' => 'ptr', 'Potri.008G195500' => 'ptr', 'Potri.009G148800' => 'ptr', 'Potri.011G004700' => 'ptr', 'Pp3c17_22810' => 'ppa', 'Pp3c18_4480' => 'ppa', 'Pp3c19_13030' => 'ppa', 'Pp3c1_33620' => 'ppa', 'Pp3c2_9380' => 'ppa', 'PRCOL_00001023' => 'pco', 'Prupe.3G216300' => 'ppe', 'Prupe.4G019500' => 'ppe', 'Prupe.6G092500' => 'ppe', 'Prupe.6G119200' => 'ppe', 'Psat0s1945g0080' => 'psa', 'Psat0s4167g0040' => 'psa', 'Psat1g185800' => 'psa', 'Psat4g006440' => 'psa', 'Psat4g006480' => 'psa', 'Psat4g168120' => 'psa', 'Psat5g255680' => 'psa', 'Psat5g261760' => 'psa', 'Psat7g222120' => 'psa', 'PSO063G7252' => 'pso', 'PSO170G4778' => 'pso', 'PSO210G2249' => 'pso', 'PSO339G2411' => 'pso', 'PSO339G2457' => 'pso', 'PSO339G2854' => 'pso', 'PSO339G4288' => 'pso', 'PSO339G4615' => 'pso', 'PSO384G2796' => 'pso', 'PSO384G2940' => 'pso', 'PSO384G4227' => 'pso', 'PSO478G1425' => 'pso', 'PSO541G3863' => 'pso', 'PSO675G0507' => 'pso', 'PSO782G0338' => 'pso', 'PSO832G0644' => 'pso', 'QL01p013664' => 'qlo', 'QL01p036598' => 'qlo', 'QL05p072984' => 'qlo', 'QL08p005768' => 'qlo', 'QL08p032743' => 'qlo', 'QL93p0073_0439' => 'qlo', 'QL93p0073_0444' => 'qlo', 'RcHm_v2.0_Chr5g0002851' => 'rch', 'RcHm_v2.0_Chr5g0055201' => 'rch', 'RcHm_v2.0_Chr5g0061191' => 'rch', 'RcHm_v2.0_Chr7g0203231' => 'rch', 'Rhsim01G0208100' => 'rsi', 'Rhsim01G0208200' => 'rsi', 'Rhsim02G0106500' => 'rsi', 'Rhsim03G0107900' => 'rsi', 'Rhsim06G0163400' => 'rsi', 'Rhsim13G0105200' => 'rsi', 'Sabra04G0006300' => 'sbr', 'Sabra04G0127000' => 'sbr', 'Sabra08G0148700' => 'sbr', 'Sabra09G0117400' => 'sbr', 'SalBow1G3326' => 'sbo', 'SalBow3G3228' => 'sbo', 'SalBow6G1634' => 'sbo', 'SalBow6G3603' => 'sbo', 'SalBow6G5266' => 'sbo', 'SalBow7G2265' => 'sbo', 'SalBow8G0850' => 'sbo', 'SalBow8G2592' => 'sbo', 'Sc05g0009240' => 'sci', 'Sc12g0002300' => 'sci', 'Sc21g0000100' => 'sci', 'Sc21g0004720' => 'sci', 'Sed0002949' => 'sed', 'Sed0004114' => 'sed', 'Sed0004306' => 'sed', 'Sed0006172' => 'sed', 'Sed0008413' => 'sed', 'Sed0013809' => 'sed', 'Sed0019556' => 'sed', 'SEGI_03570' => 'sgi', 'SEGI_07859' => 'sgi', 'SEGI_15042' => 'sgi', 'SEGI_16263' => 'sgi', 'SEGI_16552' => 'sgi', 'SEGI_24331' => 'sgi', 'SEGI_27316' => 'sgi', 'SEGI_29521' => 'sgi', 'SEGI_41342' => 'sgi', 'SGA_v2.0_scaffold27G11617' => 'sas', 'SGA_v2.0_scaffold316G48428' => 'sas', 'SGA_v2.0_scaffold49G18261' => 'sas', 'SGA_v2.0_scaffold7G03831' => 'sas', 'SGA_v2.0_scaffold93G28359' => 'sas', 'SHI02210' => 'shi', 'SHI06028' => 'shi', 'SHI06321' => 'shi', 'SMO111G0012' => 'smo', 'SMO228G0080' => 'smo', 'SMO356G0756' => 'smo', 'Solyc02g080620.3' => 'sly', 'Solyc06g074530.1' => 'sly', 'Solyc11g066890.1' => 'sly', 'Solyc11g072520.3' => 'sly', 'Sopen02g025330' => 'spe', 'Sopen06g031000' => 'spe', 'Sopen09g008240' => 'spe', 'Sopen09g025210' => 'spe', 'Sopen11g026600' => 'spe', 'Sopen11g030170' => 'spe', 'Sp1g10420' => 'spa', 'Sp3g06570' => 'spa', 'Sp4g10660' => 'spa', 'Sp5g16460' => 'spa', 'Sp6g22710' => 'spa', 'TAR365G0112' => 'tar', 'TAR369G0717' => 'tar', 'TAR374G0976' => 'tar', 'TAR623G1128' => 'tar', 'TAR626G1937' => 'tar', 'TAR627G0123' => 'tar', 'TAR628G0305' => 'tar', 'TAR636G1176' => 'tar', 'TAR636G2442' => 'tar', 'THA.LOC104800556' => 'tha', 'THA.LOC104809501' => 'tha', 'THA.LOC104815126' => 'tha', 'THA.LOC104815732' => 'tha', 'THA.LOC104823528' => 'tha', 'Thecc.02G365600' => 'tca', 'Thecc.06G222300' => 'tca', 'Thecc.09G261800' => 'tca', 'Thecc.09G291400' => 'tca', 'Thhalv10003028m.g' => 'esa', 'Thhalv10007886m.g' => 'esa', 'Thhalv10016085m.g' => 'esa', 'Thhalv10016681m.g' => 'esa', 'Thhalv10020951m.g' => 'esa', 'TPR.G15598' => 'tpr', 'TPR.G29305' => 'tpr', 'TPR.G32395' => 'tpr', 'TPR.G36998' => 'tpr', 'TPR.G4227' => 'tpr', 'TWI18G1433' => 'twi', 'TWI31G0755' => 'twi', 'TWI38G0912' => 'twi', 'TWI75G1097' => 'twi', 'TWI75G1619' => 'twi', 'TWI79G1336' => 'twi', 'unitig_0.g943' => 'ugi', 'unitig_0.g944' => 'ugi', 'unitig_22.g6646' => 'ugi', 'unitig_37.g12681' => 'ugi', 'unitig_8.g3290' => 'ugi', 'vmacro03278' => 'vma', 'vmacro12197' => 'vma', 'vmacro14478' => 'vma', 'vmacro15787' => 'vma', 'vmacro15789' => 'vma', 'vmacro15790' => 'vma', 'vmacro15806' => 'vma', 'vmacro22907' => 'vma', 'vmacro22908' => 'vma', 'vmacro22909' => 'vma', 'vmacro23108' => 'vma', 'VMungo0540G0540' => 'vmu', 'VMungo0540G2468' => 'vmu', 'VMungo1080G0390' => 'vmu', 'VMungo1080G1165' => 'vmu', 'VMungo1127G0170' => 'vmu', 'VMungo1127G2099' => 'vmu', 'VMungo1215G3013' => 'vmu', 'Zm00001eb013110' => 'zma', 'Zm00001eb084260' => 'zma', 'Zm00001eb096110' => 'zma', 'Zm00001eb217510' => 'zma', 'Zm00001eb322550' => 'zma', 'Zm00001eb390770' => 'zma', 'Zm00001eb397170' => 'zma', 'Zm00001eb404610' => 'zma', 'Zm00001eb421790' => 'zma' ) $gf_id = 'HOM05D000911' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000911' ) $data_identifier = 'HOM05D000911' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 16, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 5, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 6, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 8, 'nnu' => (int) 16, 'oeu' => (int) 8, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 5, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 16, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421790' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000911', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27780' => 'bna', 'A03p35380' => 'bna', 'A04p21160' => 'bna', 'A05p40570' => 'bna', 'A06p26900' => 'bna', 'A08p33230' => 'bna', 'A09p65960' => 'bna', 'A10p18290' => 'bna', 'Aa31LG1G12990' => 'aar', 'Aa31LG1G2980' => 'aar', 'Aa31LG4G14320' => 'aar', 'Aa31LG7G11800' => 'aar', 'Aa31sc36G50' => 'aar', 'Aa31sc36G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3721' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5459' => 'aag', 'Actinidia03028' => 'ach', 'Actinidia03753' => 'ach', 'Actinidia04187' => 'ach', 'Actinidia05509' => 'ach', 'Actinidia24180' => 'ach', 'Actinidia26906' => 'ach', 'Actinidia37097' => 'ach', 'Actinidia38249' => 'ach', 'Ah.01g003470' => 'amhyb', 'Ah.01g004580' => 'amhyb', 'Ah.01g014850' => 'amhyb', 'Ah.01g016830' => 'amhyb', 'Ah.14g088000' => 'amhyb', 'AL1G22980' => 'aly', 'AL3G18990' => 'aly', 'AL4G22440' => 'aly', 'AL4G33180' => 'aly', 'AL5G22920' => 'aly', 'AL6G33660' => 'aly', 'AL8G20720' => 'aly', 'Aqoxy1G00935' => 'aox', 'Aqoxy1G02094' => 'aox', 'Aqoxy2G01239' => 'aox', 'Aqoxy4G01870' => 'aox', 'Aqoxy7G00450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.36ZVTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71EM27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5D6C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH3WRE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3NCM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RIM768' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YB5YRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z36GDV' => 'arhy', 'AT1G08250' => 'ath', 'AT1G11790' => 'ath', 'AT2G27820' => 'ath', 'AT3G07630' => 'ath', 'AT3G44720' => 'ath', 'AT5G22630' => 'ath', 'ATR0693G304' => 'atr', 'ATR0794G109' => 'atr', 'ATR0820G120' => 'atr', 'ATR1159G064' => 'atr', 'Atru.chr10.2239' => 'acertr', 'Atru.chr3.3371' => 'acertr', 'Atru.chr6.3202' => 'acertr', 'AUR62006499' => 'cqu', 'AUR62012718' => 'cqu', 'AUR62021938' => 'cqu', 'AUR62023932' => 'cqu', 'AUR62025034' => 'cqu', 'AUR62025035' => 'cqu', 'AUR62038307' => 'cqu', 'AUR62043466' => 'cqu', 'BcaB02g10748' => 'bca', 'BcaB03g13231' => 'bca', 'BcaB03g14689' => 'bca', 'BcaB05g22716' => 'bca', 'BcaB06g28172' => 'bca', 'BcaB08g36413' => 'bca', 'BcaC01g02186' => 'bca', 'BcaC01g04272' => 'bca', 'BcaC02g08080' => 'bca', 'BcaC02g08227' => 'bca', 'BcaC03g13901' => 'bca', 'BcaC04g19593' => 'bca', 'BcaC04g20874' => 'bca', 'BcaC05g29557' => 'bca', 'BcaC06g35505' => 'bca', 'BcaC07g41954' => 'bca', 'BcaC07g41955' => 'bca', 'BcaC07g41956' => 'bca', 'BcaC07g42519' => 'bca', 'BcaC07g42520' => 'bca', 'BcaC07g42523' => 'bca', 'BcaC07g42524' => 'bca', 'BcaC07g42525' => 'bca', 'BcaC08g47480' => 'bca', 'BcaC08g47481' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00530' => 'bna', 'BolC2t07178H' => 'bol', 'BolC3t16567H' => 'bol', 'BolC4t27234H' => 'bol', 'BolC5t29728H' => 'bol', 'BolC5t34622H' => 'bol', 'BolC6t40321H' => 'bol', 'BolC7t42028H' => 'bol', 'BolC8t49125H' => 'bol', 'BolC8t52538H' => 'bol', 'BolC8t52539H' => 'bol', 'BolC9t56681H' => 'bol', 'BolC9t58266H' => 'bol', 'BolSC21t60294H' => 'bol', 'BraA02t05670Z' => 'bra', 'BraA03t12716Z' => 'bra', 'BraA04t17685Z' => 'bra', 'BraA05t22788Z' => 'bra', 'BraA06t24032Z' => 'bra', 'BraA06t25625Z' => 'bra', 'BraA07t27930Z' => 'bra', 'BraA08t35242Z' => 'bra', 'BraA09t38609Z' => 'bra', 'BraA10t43905Z' => 'bra', 'C02p11060' => 'bna', 'C03p42990' => 'bna', 'C03p67310' => 'bna', 'C04p56990' => 'bna', 'C04p58660' => 'bna', 'C05p09890' => 'bna', 'C05p59680' => 'bna', 'C06p19830' => 'bna', 'C06p53040' => 'bna', 'C07p15230' => 'bna', 'C08p50070' => 'bna', 'C08p50090' => 'bna', 'C09p38330' => 'bna', 'C09p53940' => 'bna', 'CAN.G1014.1' => 'can', 'CAN.G644.30' => 'can', 'CAN.G84.47' => 'can', 'CAN.G919.8' => 'can', 'CANSAT54G0113' => 'cansat', 'CANSAT54G1286' => 'cansat', 'CANSAT64G1020' => 'cansat', 'CARHR008080' => 'chi', 'CARHR008090' => 'chi', 'CARHR012130' => 'chi', 'CARHR038390' => 'chi', 'CARHR082330' => 'chi', 'CARHR120520' => 'chi', 'CARHR151470' => 'chi', 'CARHR190950' => 'chi', 'Carub.0001s0760' => 'cru', 'Carub.0001s1146' => 'cru', 'Carub.0003s0721' => 'cru', 'Carub.0004s0858' => 'cru', 'Carub.0005s1040' => 'cru', 'Carub.0006s2035' => 'cru', 'Carub.0015s0005' => 'cru', 'Ca_01607_v3' => 'car', 'Ca_01677_v3' => 'car', 'Ca_06087_v3' => 'car', 'Ca_19238_v3' => 'car', 'Ca_19373_v3' => 'car', 'Ca_21079_v3' => 'car', 'CBR_g54016' => 'cbr', 'CBR_g54018' => 'cbr', 'CBR_g54020' => 'cbr', 'Cc01_g09780' => 'ccan', 'Cc01_g11680' => 'ccan', 'Cc02_g15610' => 'ccan', 'Cc05_g04350' => 'ccan', 'Cc09_g01580' => 'ccan', 'CDE01G0795' => 'cde', 'CDE02G2024' => 'cde', 'CDE02G2260' => 'cde', 'CDE02G4561' => 'cde', 'CDE05G2733' => 'cde', 'CDE05G3422' => 'cde', 'CDE06G2003' => 'cde', 'CDE08G0576' => 'cde', 'CDE09G0048' => 'cde', 'CDE11G0805' => 'cde', 'Cfa003644' => 'cfa', 'Cfa006290' => 'cfa', 'Cfa010080' => 'cfa', 'Cfa011376' => 'cfa', 'Cfa011576' => 'cfa', 'Cfa011577' => 'cfa', 'Cfa014389' => 'cfa', 'Ciclev10006044m.g' => 'ccl', 'Ciclev10006954m.g' => 'ccl', 'Ciclev10015131m.g' => 'ccl', 'Ciclev10015580m.g' => 'ccl', 'Ciclev10028359m.g' => 'ccl', 'Ciclev10028573m.g' => 'ccl', 'CiPaw.03G159300' => 'cil', 'CiPaw.04G115100' => 'cil', 'CiPaw.09G092800' => 'cil', 'CiPaw.10G071800' => 'cil', 'CiPaw.13G105800' => 'cil', 'CiPaw.13G141000' => 'cil', 'CiPaw.14G103400' => 'cil', 'ClCG01G012700' => 'cla', 'ClCG01G012720' => 'cla', 'ClCG01G021920' => 'cla', 'ClCG02G008870' => 'cla', 'ClCG02G020840' => 'cla', 'ClCG02G021930' => 'cla', 'COL.COLO4_19302' => 'col', 'COL.COLO4_25262' => 'col', 'COL.COLO4_31788' => 'col', 'Cpa.g.c34684' => 'cpa', 'Cpa.g.c36520.1' => 'cpa', 'Cpa.g.c45626' => 'cpa', 'Cpa.g.sc121.17' => 'cpa', 'Cpa.g.sc13.22' => 'cpa', 'Cpa.g.sc87.88' => 'cpa', 'Cre06.g261800' => 'cre', 'CsaV3_1G014500' => 'csa', 'CsaV3_1G014510' => 'csa', 'CsaV3_2G034880' => 'csa', 'CsaV3_6G014760' => 'csa', 'CsaV3_6G021500' => 'csa', 'CsaV3_6G048980' => 'csa', 'CSS0002511' => 'camsi', 'CSS0007556' => 'camsi', 'CSS0008532' => 'camsi', 'CSS0009709' => 'camsi', 'CSS0010486' => 'camsi', 'CSS0016768' => 'camsi', 'CSS0023512' => 'camsi', 'CSS0025341' => 'camsi', 'CSS0027999' => 'camsi', 'CSS0028944' => 'camsi', 'CSS0032292' => 'camsi', 'CSS0032464' => 'camsi', 'CSS0037153' => 'camsi', 'CSS0039256' => 'camsi', 'CSS0048392' => 'camsi', 'CSS0050458' => 'camsi', 'DCAR_004224' => 'dca', 'DCAR_006147' => 'dca', 'DCAR_006465' => 'dca', 'DCAR_008159' => 'dca', 'DCAR_012164' => 'dca', 'DCAR_019764' => 'dca', 'Dinv05418' => 'din', 'Dinv10839' => 'din', 'Dinv12521' => 'din', 'Dinv13900' => 'din', 'Dinv29426' => 'din', 'Duzib150G0263' => 'dzi', 'Duzib168G1178' => 'dzi', 'Duzib168G1924' => 'dzi', 'Duzib170G0299' => 'dzi', 'Duzib170G0813' => 'dzi', 'Duzib235G1128' => 'dzi', 'Duzib248G1060' => 'dzi', 'ECA232G1910' => 'eca', 'ECA233G4621' => 'eca', 'ECA238G1216' => 'eca', 'ECA238G1784' => 'eca', 'ECA248G1242' => 'eca', 'EL10Ac8g20071' => 'bvu', 'EL10Ac9g21086' => 'bvu', 'EL10Ac9g22407' => 'bvu', 'EL10Ac9g22412' => 'bvu', 'Eucgr.A01119' => 'egr', 'Eucgr.E04043' => 'egr', 'Eucgr.J00428' => 'egr', 'Eucgr.J00958' => 'egr', 'FAN11G3091' => 'fan', 'FAN11G3651' => 'fan', 'FAN16G2566' => 'fan', 'FAN21G3155' => 'fan', 'FAN21G3400' => 'fan', 'FAN21G3543' => 'fan', 'FAN25G0234' => 'fan', 'FAN25G1422' => 'fan', 'FAN25G3392' => 'fan', 'FvH4_3g01940' => 'fve', 'FvH4_3g29870' => 'fve', 'FvH4_3g33680' => 'fve', 'Glyma.09G004200' => 'gma', 'Glyma.11G151288' => 'gma', 'Glyma.11G189100' => 'gma', 'Glyma.12G072500' => 'gma', 'Glyma.12G085500' => 'gma', 'Glyma.12G181800' => 'gma', 'Glyma.12G193000' => 'gma', 'Glyma.13G309300' => 'gma', 'Glyma.13G319000' => 'gma', 'Glyma.17G012600' => 'gma', 'Gohir.A06G148600' => 'ghi', 'Gohir.A07G115800' => 'ghi', 'Gohir.A08G003600' => 'ghi', 'Gohir.A09G093300' => 'ghi', 'Gohir.A09G105400' => 'ghi', 'Gohir.A09G105500' => 'ghi', 'Gohir.D06G154600' => 'ghi', 'Gohir.D07G120200' => 'ghi', 'Gohir.D08G013900' => 'ghi', 'Gohir.D09G093100' => 'ghi', 'Gohir.D09G102200' => 'ghi', 'Gohir.D09G102300' => 'ghi', 'Gorai.001G129400' => 'gra', 'Gorai.004G008200' => 'gra', 'Gorai.006G109800' => 'gra', 'Gorai.006G119500' => 'gra', 'Gorai.006G121300' => 'gra', 'Gorai.010G180700' => 'gra', 'GSVIVG01012716001' => 'vvi', 'GSVIVG01025118001' => 'vvi', 'GSVIVG01030439001' => 'vvi', 'GSVIVG01031397001' => 'vvi', 'HanXRQChr01g0004201' => 'han', 'HanXRQChr02g0054941' => 'han', 'HanXRQChr05g0141811' => 'han', 'HanXRQChr07g0197751' => 'han', 'HanXRQChr11g0346691' => 'han', 'HanXRQChr13g0396971' => 'han', 'HanXRQChr14g0432951' => 'han', 'HanXRQChr14g0452001' => 'han', 'HanXRQChr15g0496681' => 'han', 'HanXRQChr17g0557491' => 'han', 'HanXRQChr17g0557501' => 'han', 'Haze_06809' => 'cav', 'Haze_12852' => 'cav', 'Haze_15850' => 'cav', 'Haze_23446' => 'cav', 'Haze_23942' => 'cav', 'Haze_23943' => 'cav', 'Hma1.2p1_0091F.1_g046450' => 'hma', 'Hma1.2p1_0128F.1_g059910' => 'hma', 'Hma1.2p1_0249F.1_g102260' => 'hma', 'Hma1.2p1_0453F.1_g156190' => 'hma', 'Hma1.2p1_0695F.1_g204380' => 'hma', 'Hma1.2p1_0749F.1_g212650' => 'hma', 'Hma1.2p1_2156F.1_g315420' => 'hma', 'Hma1.2p1_2686F.1_g326940' => 'hma', 'HPP92_006428' => 'vpl', 'HPP92_012069' => 'vpl', 'HPP92_014129' => 'vpl', 'HPP92_014133' => 'vpl', 'HPP92_017315' => 'vpl', 'HPP92_026445' => 'vpl', 'HPP92_026446' => 'vpl', 'Hund00774' => 'sun', 'Hund07682' => 'sun', 'Hund21413' => 'sun', 'Hund23462' => 'sun', 'Hund23463' => 'sun', 'Lalb_Chr03g0027911' => 'lal', 'Lalb_Chr13g0304271' => 'lal', 'Lalb_Chr19g0137471' => 'lal', 'Lalb_Chr22g0350651' => 'lal', 'Lalb_Chr24g0395151' => 'lal', 'Lj1A1231T40' => 'lonja', 'Lj1A221T48' => 'lonja', 'Lj1C924T12' => 'lonja', 'Lj2C993G6' => 'lonja', 'Lj3g0005790' => 'lja', 'Lj3g0015432' => 'lja', 'Lj3g0017722' => 'lja', 'Lj3g0018497' => 'lja', 'Lj4g0025071' => 'lja', 'Lsat_1_v5_gn_1_129680' => 'lsa', 'Lsat_1_v5_gn_2_25321' => 'lsa', 'Lsat_1_v5_gn_2_95461' => 'lsa', 'Lsat_1_v5_gn_4_159620' => 'lsa', 'Lsat_1_v5_gn_6_41301' => 'lsa', 'Lsat_1_v5_gn_6_74660' => 'lsa', 'Lsat_1_v5_gn_7_11520' => 'lsa', 'Lsat_1_v5_gn_9_67680' => 'lsa', 'Manes.04G008300' => 'mes', 'Manes.04G008400' => 'mes', 'Manes.04G026500' => 'mes', 'Manes.10G135300' => 'mes', 'Manes.11G157300' => 'mes', 'Manes.12G074000' => 'mes', 'Manes.16G006200' => 'mes', 'Manes.17G026400' => 'mes', 'Mapoly0024s0086' => 'mpo', 'Mapoly0024s0087' => 'mpo', 'Mapoly0071s0057' => 'mpo', 'Mapoly0204s0012' => 'mpo', 'MBI04_g37681_MAGBIO' => 'mbi', 'MBI05_g17779_MAGBIO' => 'mbi', 'MBI12_g31184_MAGBIO' => 'mbi', 'MBI17_g11083_MAGBIO' => 'mbi', 'MBI18_g03883_MAGBIO' => 'mbi', 'MBI18_g28940_MAGBIO' => 'mbi', 'MCO01G690' => 'mco', 'MD03G1109900' => 'mdo', 'MD03G1134800' => 'mdo', 'MD05G1348000' => 'mdo', 'MD10G1322400' => 'mdo', 'MD11G1123300' => 'mdo', 'MD11G1157600' => 'mdo', 'Medtr2g084875' => 'mtr', 'Medtr2g088130' => 'mtr', 'Medtr4g055310' => 'mtr', 'Medtr4g061070' => 'mtr', 'Medtr4g132250' => 'mtr', 'MELO3C004795.2' => 'cme', 'MELO3C004797.2' => 'cme', 'MELO3C007396.2' => 'cme', 'MELO3C019277.2' => 'cme', 'MELO3C021449.2' => 'cme', 'MELO3C025736.2' => 'cme', 'Migut.D02175' => 'egut', 'Migut.H01573' => 'egut', 'Migut.M01327' => 'egut', 'Migut.N02513' => 'egut', 'MSTRG.14638' => 'ama', 'MSTRG.18632' => 'ama', 'MSTRG.7203' => 'ama', 'Nitab4.5_0000533g0140' => 'nta', 'Nitab4.5_0000888g0150' => 'nta', 'Nitab4.5_0001453g0040' => 'nta', 'Nitab4.5_0002827g0090' => 'nta', 'Nitab4.5_0003082g0040' => 'nta', 'Nitab4.5_0007799g0040' => 'nta', 'Nitab4.5_0008983g0010' => 'nta', 'Nitab4.5_0009017g0020' => 'nta', 'Nn1g02132' => 'nnu', 'Nn1g03492' => 'nnu', 'Nn1g03493' => 'nnu', 'Nn1g03494' => 'nnu', 'Nn1g07164' => 'nnu', 'Nn1g07291' => 'nnu', 'Nn2g10655' => 'nnu', 'Nn2g11652' => 'nnu', 'Nn2g14008' => 'nnu', 'Nn3g17476' => 'nnu', 'Nn3g17477' => 'nnu', 'Nn4g22370' => 'nnu', 'Nn4g25255' => 'nnu', 'Nn5g27755' => 'nnu', 'Nn6g34260' => 'nnu', 'Nn6g35041' => 'nnu', 'Oeu005924.1' => 'oeu', 'Oeu008383.1' => 'oeu', 'Oeu014928.1' => 'oeu', 'Oeu019889.1' => 'oeu', 'Oeu022271.1' => 'oeu', 'Oeu025271.1' => 'oeu', 'Oeu036302.1' => 'oeu', 'Oeu044100.1' => 'oeu', 'Os01g0528300' => 'osa', 'Os03g0286200' => 'osa', 'Os04g0406600' => 'osa', 'Os07g0512000' => 'osa', 'Os07g0694600' => 'osa', 'Os08g0411000' => 'osa', 'Os09g0565700' => 'osa', 'Os09g0566050' => 'osa', 'Os10g0523700' => 'osa', 'Peaxi162Scf00002g00514' => 'pax', 'Peaxi162Scf00047g01817' => 'pax', 'Peaxi162Scf00114g00001' => 'pax', 'Peaxi162Scf00147g00613' => 'pax', 'Peaxi162Scf00389g00425' => 'pax', 'PGR042G1139' => 'pgr', 'PGR042G3273' => 'pgr', 'PGR102G2180' => 'pgr', 'PGR119G0234' => 'pgr', 'PGR119G0668' => 'pgr', 'PGSC0003DMG400007122' => 'stu', 'PGSC0003DMG400016478' => 'stu', 'PGSC0003DMG400025374' => 'stu', 'PGSC0003DMG400026536' => 'stu', 'Phvul.003G079600' => 'pvu', 'Phvul.005G115600' => 'pvu', 'Phvul.005G127100' => 'pvu', 'Phvul.006G149500' => 'pvu', 'Phvul.006G149600' => 'pvu', 'Phvul.011G071800' => 'pvu', 'Phvul.011G090400' => 'pvu', 'Potri.004G013400' => 'ptr', 'Potri.004G188100' => 'ptr', 'Potri.008G195500' => 'ptr', 'Potri.009G148800' => 'ptr', 'Potri.011G004700' => 'ptr', 'Pp3c17_22810' => 'ppa', 'Pp3c18_4480' => 'ppa', 'Pp3c19_13030' => 'ppa', 'Pp3c1_33620' => 'ppa', 'Pp3c2_9380' => 'ppa', 'PRCOL_00001023' => 'pco', 'Prupe.3G216300' => 'ppe', 'Prupe.4G019500' => 'ppe', 'Prupe.6G092500' => 'ppe', 'Prupe.6G119200' => 'ppe', 'Psat0s1945g0080' => 'psa', 'Psat0s4167g0040' => 'psa', 'Psat1g185800' => 'psa', 'Psat4g006440' => 'psa', 'Psat4g006480' => 'psa', 'Psat4g168120' => 'psa', 'Psat5g255680' => 'psa', 'Psat5g261760' => 'psa', 'Psat7g222120' => 'psa', 'PSO063G7252' => 'pso', 'PSO170G4778' => 'pso', 'PSO210G2249' => 'pso', 'PSO339G2411' => 'pso', 'PSO339G2457' => 'pso', 'PSO339G2854' => 'pso', 'PSO339G4288' => 'pso', 'PSO339G4615' => 'pso', 'PSO384G2796' => 'pso', 'PSO384G2940' => 'pso', 'PSO384G4227' => 'pso', 'PSO478G1425' => 'pso', 'PSO541G3863' => 'pso', 'PSO675G0507' => 'pso', 'PSO782G0338' => 'pso', 'PSO832G0644' => 'pso', 'QL01p013664' => 'qlo', 'QL01p036598' => 'qlo', 'QL05p072984' => 'qlo', 'QL08p005768' => 'qlo', 'QL08p032743' => 'qlo', 'QL93p0073_0439' => 'qlo', 'QL93p0073_0444' => 'qlo', 'RcHm_v2.0_Chr5g0002851' => 'rch', 'RcHm_v2.0_Chr5g0055201' => 'rch', 'RcHm_v2.0_Chr5g0061191' => 'rch', 'RcHm_v2.0_Chr7g0203231' => 'rch', 'Rhsim01G0208100' => 'rsi', 'Rhsim01G0208200' => 'rsi', 'Rhsim02G0106500' => 'rsi', 'Rhsim03G0107900' => 'rsi', 'Rhsim06G0163400' => 'rsi', 'Rhsim13G0105200' => 'rsi', 'Sabra04G0006300' => 'sbr', 'Sabra04G0127000' => 'sbr', 'Sabra08G0148700' => 'sbr', 'Sabra09G0117400' => 'sbr', 'SalBow1G3326' => 'sbo', 'SalBow3G3228' => 'sbo', 'SalBow6G1634' => 'sbo', 'SalBow6G3603' => 'sbo', 'SalBow6G5266' => 'sbo', 'SalBow7G2265' => 'sbo', 'SalBow8G0850' => 'sbo', 'SalBow8G2592' => 'sbo', 'Sc05g0009240' => 'sci', 'Sc12g0002300' => 'sci', 'Sc21g0000100' => 'sci', 'Sc21g0004720' => 'sci', 'Sed0002949' => 'sed', 'Sed0004114' => 'sed', 'Sed0004306' => 'sed', 'Sed0006172' => 'sed', 'Sed0008413' => 'sed', 'Sed0013809' => 'sed', 'Sed0019556' => 'sed', 'SEGI_03570' => 'sgi', 'SEGI_07859' => 'sgi', 'SEGI_15042' => 'sgi', 'SEGI_16263' => 'sgi', 'SEGI_16552' => 'sgi', 'SEGI_24331' => 'sgi', 'SEGI_27316' => 'sgi', 'SEGI_29521' => 'sgi', 'SEGI_41342' => 'sgi', 'SGA_v2.0_scaffold27G11617' => 'sas', 'SGA_v2.0_scaffold316G48428' => 'sas', 'SGA_v2.0_scaffold49G18261' => 'sas', 'SGA_v2.0_scaffold7G03831' => 'sas', 'SGA_v2.0_scaffold93G28359' => 'sas', 'SHI02210' => 'shi', 'SHI06028' => 'shi', 'SHI06321' => 'shi', 'SMO111G0012' => 'smo', 'SMO228G0080' => 'smo', 'SMO356G0756' => 'smo', 'Solyc02g080620.3' => 'sly', 'Solyc06g074530.1' => 'sly', 'Solyc11g066890.1' => 'sly', 'Solyc11g072520.3' => 'sly', 'Sopen02g025330' => 'spe', 'Sopen06g031000' => 'spe', 'Sopen09g008240' => 'spe', 'Sopen09g025210' => 'spe', 'Sopen11g026600' => 'spe', 'Sopen11g030170' => 'spe', 'Sp1g10420' => 'spa', 'Sp3g06570' => 'spa', 'Sp4g10660' => 'spa', 'Sp5g16460' => 'spa', 'Sp6g22710' => 'spa', 'TAR365G0112' => 'tar', 'TAR369G0717' => 'tar', 'TAR374G0976' => 'tar', 'TAR623G1128' => 'tar', 'TAR626G1937' => 'tar', 'TAR627G0123' => 'tar', 'TAR628G0305' => 'tar', 'TAR636G1176' => 'tar', 'TAR636G2442' => 'tar', 'THA.LOC104800556' => 'tha', 'THA.LOC104809501' => 'tha', 'THA.LOC104815126' => 'tha', 'THA.LOC104815732' => 'tha', 'THA.LOC104823528' => 'tha', 'Thecc.02G365600' => 'tca', 'Thecc.06G222300' => 'tca', 'Thecc.09G261800' => 'tca', 'Thecc.09G291400' => 'tca', 'Thhalv10003028m.g' => 'esa', 'Thhalv10007886m.g' => 'esa', 'Thhalv10016085m.g' => 'esa', 'Thhalv10016681m.g' => 'esa', 'Thhalv10020951m.g' => 'esa', 'TPR.G15598' => 'tpr', 'TPR.G29305' => 'tpr', 'TPR.G32395' => 'tpr', 'TPR.G36998' => 'tpr', 'TPR.G4227' => 'tpr', 'TWI18G1433' => 'twi', 'TWI31G0755' => 'twi', 'TWI38G0912' => 'twi', 'TWI75G1097' => 'twi', 'TWI75G1619' => 'twi', 'TWI79G1336' => 'twi', 'unitig_0.g943' => 'ugi', 'unitig_0.g944' => 'ugi', 'unitig_22.g6646' => 'ugi', 'unitig_37.g12681' => 'ugi', 'unitig_8.g3290' => 'ugi', 'vmacro03278' => 'vma', 'vmacro12197' => 'vma', 'vmacro14478' => 'vma', 'vmacro15787' => 'vma', 'vmacro15789' => 'vma', 'vmacro15790' => 'vma', 'vmacro15806' => 'vma', 'vmacro22907' => 'vma', 'vmacro22908' => 'vma', 'vmacro22909' => 'vma', 'vmacro23108' => 'vma', 'VMungo0540G0540' => 'vmu', 'VMungo0540G2468' => 'vmu', 'VMungo1080G0390' => 'vmu', 'VMungo1080G1165' => 'vmu', 'VMungo1127G0170' => 'vmu', 'VMungo1127G2099' => 'vmu', 'VMungo1215G3013' => 'vmu', 'Zm00001eb013110' => 'zma', 'Zm00001eb084260' => 'zma', 'Zm00001eb096110' => 'zma', 'Zm00001eb217510' => 'zma', 'Zm00001eb322550' => 'zma', 'Zm00001eb390770' => 'zma', 'Zm00001eb397170' => 'zma', 'Zm00001eb404610' => 'zma', 'Zm00001eb421790' => 'zma' ), 'gf_id' => 'HOM05D000911', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000911' ), 'data_identifier' => 'HOM05D000911', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000911', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27780' => 'bna', 'A03p35380' => 'bna', 'A04p21160' => 'bna', 'A05p40570' => 'bna', 'A06p26900' => 'bna', 'A08p33230' => 'bna', 'A09p65960' => 'bna', 'A10p18290' => 'bna', 'Aa31LG1G12990' => 'aar', 'Aa31LG1G2980' => 'aar', 'Aa31LG4G14320' => 'aar', 'Aa31LG7G11800' => 'aar', 'Aa31sc36G50' => 'aar', 'Aa31sc36G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3721' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5459' => 'aag', 'Actinidia03028' => 'ach', 'Actinidia03753' => 'ach', 'Actinidia04187' => 'ach', 'Actinidia05509' => 'ach', 'Actinidia24180' => 'ach', 'Actinidia26906' => 'ach', 'Actinidia37097' => 'ach', 'Actinidia38249' => 'ach', 'Ah.01g003470' => 'amhyb', 'Ah.01g004580' => 'amhyb', 'Ah.01g014850' => 'amhyb', 'Ah.01g016830' => 'amhyb', 'Ah.14g088000' => 'amhyb', 'AL1G22980' => 'aly', 'AL3G18990' => 'aly', 'AL4G22440' => 'aly', 'AL4G33180' => 'aly', 'AL5G22920' => 'aly', 'AL6G33660' => 'aly', 'AL8G20720' => 'aly', 'Aqoxy1G00935' => 'aox', 'Aqoxy1G02094' => 'aox', 'Aqoxy2G01239' => 'aox', 'Aqoxy4G01870' => 'aox', 'Aqoxy7G00450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.36ZVTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71EM27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5D6C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH3WRE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3NCM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RIM768' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YB5YRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z36GDV' => 'arhy', 'AT1G08250' => 'ath', 'AT1G11790' => 'ath', 'AT2G27820' => 'ath', 'AT3G07630' => 'ath', 'AT3G44720' => 'ath', 'AT5G22630' => 'ath', 'ATR0693G304' => 'atr', 'ATR0794G109' => 'atr', 'ATR0820G120' => 'atr', 'ATR1159G064' => 'atr', 'Atru.chr10.2239' => 'acertr', 'Atru.chr3.3371' => 'acertr', 'Atru.chr6.3202' => 'acertr', 'AUR62006499' => 'cqu', 'AUR62012718' => 'cqu', 'AUR62021938' => 'cqu', 'AUR62023932' => 'cqu', 'AUR62025034' => 'cqu', 'AUR62025035' => 'cqu', 'AUR62038307' => 'cqu', 'AUR62043466' => 'cqu', 'BcaB02g10748' => 'bca', 'BcaB03g13231' => 'bca', 'BcaB03g14689' => 'bca', 'BcaB05g22716' => 'bca', 'BcaB06g28172' => 'bca', 'BcaB08g36413' => 'bca', 'BcaC01g02186' => 'bca', 'BcaC01g04272' => 'bca', 'BcaC02g08080' => 'bca', 'BcaC02g08227' => 'bca', 'BcaC03g13901' => 'bca', 'BcaC04g19593' => 'bca', 'BcaC04g20874' => 'bca', 'BcaC05g29557' => 'bca', 'BcaC06g35505' => 'bca', 'BcaC07g41954' => 'bca', 'BcaC07g41955' => 'bca', 'BcaC07g41956' => 'bca', 'BcaC07g42519' => 'bca', 'BcaC07g42520' => 'bca', 'BcaC07g42523' => 'bca', 'BcaC07g42524' => 'bca', 'BcaC07g42525' => 'bca', 'BcaC08g47480' => 'bca', 'BcaC08g47481' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00530' => 'bna', 'BolC2t07178H' => 'bol', 'BolC3t16567H' => 'bol', 'BolC4t27234H' => 'bol', 'BolC5t29728H' => 'bol', 'BolC5t34622H' => 'bol', 'BolC6t40321H' => 'bol', 'BolC7t42028H' => 'bol', 'BolC8t49125H' => 'bol', 'BolC8t52538H' => 'bol', 'BolC8t52539H' => 'bol', 'BolC9t56681H' => 'bol', 'BolC9t58266H' => 'bol', 'BolSC21t60294H' => 'bol', 'BraA02t05670Z' => 'bra', 'BraA03t12716Z' => 'bra', 'BraA04t17685Z' => 'bra', 'BraA05t22788Z' => 'bra', 'BraA06t24032Z' => 'bra', 'BraA06t25625Z' => 'bra', 'BraA07t27930Z' => 'bra', 'BraA08t35242Z' => 'bra', 'BraA09t38609Z' => 'bra', 'BraA10t43905Z' => 'bra', 'C02p11060' => 'bna', 'C03p42990' => 'bna', 'C03p67310' => 'bna', 'C04p56990' => 'bna', 'C04p58660' => 'bna', 'C05p09890' => 'bna', 'C05p59680' => 'bna', 'C06p19830' => 'bna', 'C06p53040' => 'bna', 'C07p15230' => 'bna', 'C08p50070' => 'bna', 'C08p50090' => 'bna', 'C09p38330' => 'bna', 'C09p53940' => 'bna', 'CAN.G1014.1' => 'can', 'CAN.G644.30' => 'can', 'CAN.G84.47' => 'can', 'CAN.G919.8' => 'can', 'CANSAT54G0113' => 'cansat', 'CANSAT54G1286' => 'cansat', 'CANSAT64G1020' => 'cansat', 'CARHR008080' => 'chi', 'CARHR008090' => 'chi', 'CARHR012130' => 'chi', 'CARHR038390' => 'chi', 'CARHR082330' => 'chi', 'CARHR120520' => 'chi', 'CARHR151470' => 'chi', 'CARHR190950' => 'chi', 'Carub.0001s0760' => 'cru', 'Carub.0001s1146' => 'cru', 'Carub.0003s0721' => 'cru', 'Carub.0004s0858' => 'cru', 'Carub.0005s1040' => 'cru', 'Carub.0006s2035' => 'cru', 'Carub.0015s0005' => 'cru', 'Ca_01607_v3' => 'car', 'Ca_01677_v3' => 'car', 'Ca_06087_v3' => 'car', 'Ca_19238_v3' => 'car', 'Ca_19373_v3' => 'car', 'Ca_21079_v3' => 'car', 'CBR_g54016' => 'cbr', 'CBR_g54018' => 'cbr', 'CBR_g54020' => 'cbr', 'Cc01_g09780' => 'ccan', 'Cc01_g11680' => 'ccan', 'Cc02_g15610' => 'ccan', 'Cc05_g04350' => 'ccan', 'Cc09_g01580' => 'ccan', 'CDE01G0795' => 'cde', 'CDE02G2024' => 'cde', 'CDE02G2260' => 'cde', 'CDE02G4561' => 'cde', 'CDE05G2733' => 'cde', 'CDE05G3422' => 'cde', 'CDE06G2003' => 'cde', 'CDE08G0576' => 'cde', 'CDE09G0048' => 'cde', 'CDE11G0805' => 'cde', 'Cfa003644' => 'cfa', 'Cfa006290' => 'cfa', 'Cfa010080' => 'cfa', 'Cfa011376' => 'cfa', 'Cfa011576' => 'cfa', 'Cfa011577' => 'cfa', 'Cfa014389' => 'cfa', 'Ciclev10006044m.g' => 'ccl', 'Ciclev10006954m.g' => 'ccl', 'Ciclev10015131m.g' => 'ccl', 'Ciclev10015580m.g' => 'ccl', 'Ciclev10028359m.g' => 'ccl', 'Ciclev10028573m.g' => 'ccl', 'CiPaw.03G159300' => 'cil', 'CiPaw.04G115100' => 'cil', 'CiPaw.09G092800' => 'cil', 'CiPaw.10G071800' => 'cil', 'CiPaw.13G105800' => 'cil', 'CiPaw.13G141000' => 'cil', 'CiPaw.14G103400' => 'cil', 'ClCG01G012700' => 'cla', 'ClCG01G012720' => 'cla', 'ClCG01G021920' => 'cla', 'ClCG02G008870' => 'cla', 'ClCG02G020840' => 'cla', 'ClCG02G021930' => 'cla', 'COL.COLO4_19302' => 'col', 'COL.COLO4_25262' => 'col', 'COL.COLO4_31788' => 'col', 'Cpa.g.c34684' => 'cpa', 'Cpa.g.c36520.1' => 'cpa', 'Cpa.g.c45626' => 'cpa', 'Cpa.g.sc121.17' => 'cpa', 'Cpa.g.sc13.22' => 'cpa', 'Cpa.g.sc87.88' => 'cpa', 'Cre06.g261800' => 'cre', 'CsaV3_1G014500' => 'csa', 'CsaV3_1G014510' => 'csa', 'CsaV3_2G034880' => 'csa', 'CsaV3_6G014760' => 'csa', 'CsaV3_6G021500' => 'csa', 'CsaV3_6G048980' => 'csa', 'CSS0002511' => 'camsi', 'CSS0007556' => 'camsi', 'CSS0008532' => 'camsi', 'CSS0009709' => 'camsi', 'CSS0010486' => 'camsi', 'CSS0016768' => 'camsi', 'CSS0023512' => 'camsi', 'CSS0025341' => 'camsi', 'CSS0027999' => 'camsi', 'CSS0028944' => 'camsi', 'CSS0032292' => 'camsi', 'CSS0032464' => 'camsi', 'CSS0037153' => 'camsi', 'CSS0039256' => 'camsi', 'CSS0048392' => 'camsi', 'CSS0050458' => 'camsi', 'DCAR_004224' => 'dca', 'DCAR_006147' => 'dca', 'DCAR_006465' => 'dca', 'DCAR_008159' => 'dca', 'DCAR_012164' => 'dca', 'DCAR_019764' => 'dca', 'Dinv05418' => 'din', 'Dinv10839' => 'din', 'Dinv12521' => 'din', 'Dinv13900' => 'din', 'Dinv29426' => 'din', 'Duzib150G0263' => 'dzi', 'Duzib168G1178' => 'dzi', 'Duzib168G1924' => 'dzi', 'Duzib170G0299' => 'dzi', 'Duzib170G0813' => 'dzi', 'Duzib235G1128' => 'dzi', 'Duzib248G1060' => 'dzi', 'ECA232G1910' => 'eca', 'ECA233G4621' => 'eca', 'ECA238G1216' => 'eca', 'ECA238G1784' => 'eca', 'ECA248G1242' => 'eca', 'EL10Ac8g20071' => 'bvu', 'EL10Ac9g21086' => 'bvu', 'EL10Ac9g22407' => 'bvu', 'EL10Ac9g22412' => 'bvu', 'Eucgr.A01119' => 'egr', 'Eucgr.E04043' => 'egr', 'Eucgr.J00428' => 'egr', 'Eucgr.J00958' => 'egr', 'FAN11G3091' => 'fan', 'FAN11G3651' => 'fan', 'FAN16G2566' => 'fan', 'FAN21G3155' => 'fan', 'FAN21G3400' => 'fan', 'FAN21G3543' => 'fan', 'FAN25G0234' => 'fan', 'FAN25G1422' => 'fan', 'FAN25G3392' => 'fan', 'FvH4_3g01940' => 'fve', 'FvH4_3g29870' => 'fve', 'FvH4_3g33680' => 'fve', 'Glyma.09G004200' => 'gma', 'Glyma.11G151288' => 'gma', 'Glyma.11G189100' => 'gma', 'Glyma.12G072500' => 'gma', 'Glyma.12G085500' => 'gma', 'Glyma.12G181800' => 'gma', 'Glyma.12G193000' => 'gma', 'Glyma.13G309300' => 'gma', 'Glyma.13G319000' => 'gma', 'Glyma.17G012600' => 'gma', 'Gohir.A06G148600' => 'ghi', 'Gohir.A07G115800' => 'ghi', 'Gohir.A08G003600' => 'ghi', 'Gohir.A09G093300' => 'ghi', 'Gohir.A09G105400' => 'ghi', 'Gohir.A09G105500' => 'ghi', 'Gohir.D06G154600' => 'ghi', 'Gohir.D07G120200' => 'ghi', 'Gohir.D08G013900' => 'ghi', 'Gohir.D09G093100' => 'ghi', 'Gohir.D09G102200' => 'ghi', 'Gohir.D09G102300' => 'ghi', 'Gorai.001G129400' => 'gra', 'Gorai.004G008200' => 'gra', 'Gorai.006G109800' => 'gra', 'Gorai.006G119500' => 'gra', 'Gorai.006G121300' => 'gra', 'Gorai.010G180700' => 'gra', 'GSVIVG01012716001' => 'vvi', 'GSVIVG01025118001' => 'vvi', 'GSVIVG01030439001' => 'vvi', 'GSVIVG01031397001' => 'vvi', 'HanXRQChr01g0004201' => 'han', 'HanXRQChr02g0054941' => 'han', 'HanXRQChr05g0141811' => 'han', 'HanXRQChr07g0197751' => 'han', 'HanXRQChr11g0346691' => 'han', 'HanXRQChr13g0396971' => 'han', 'HanXRQChr14g0432951' => 'han', 'HanXRQChr14g0452001' => 'han', 'HanXRQChr15g0496681' => 'han', 'HanXRQChr17g0557491' => 'han', 'HanXRQChr17g0557501' => 'han', 'Haze_06809' => 'cav', 'Haze_12852' => 'cav', 'Haze_15850' => 'cav', 'Haze_23446' => 'cav', 'Haze_23942' => 'cav', 'Haze_23943' => 'cav', 'Hma1.2p1_0091F.1_g046450' => 'hma', 'Hma1.2p1_0128F.1_g059910' => 'hma', 'Hma1.2p1_0249F.1_g102260' => 'hma', 'Hma1.2p1_0453F.1_g156190' => 'hma', 'Hma1.2p1_0695F.1_g204380' => 'hma', 'Hma1.2p1_0749F.1_g212650' => 'hma', 'Hma1.2p1_2156F.1_g315420' => 'hma', 'Hma1.2p1_2686F.1_g326940' => 'hma', 'HPP92_006428' => 'vpl', 'HPP92_012069' => 'vpl', 'HPP92_014129' => 'vpl', 'HPP92_014133' => 'vpl', 'HPP92_017315' => 'vpl', 'HPP92_026445' => 'vpl', 'HPP92_026446' => 'vpl', 'Hund00774' => 'sun', 'Hund07682' => 'sun', 'Hund21413' => 'sun', 'Hund23462' => 'sun', 'Hund23463' => 'sun', 'Lalb_Chr03g0027911' => 'lal', 'Lalb_Chr13g0304271' => 'lal', 'Lalb_Chr19g0137471' => 'lal', 'Lalb_Chr22g0350651' => 'lal', 'Lalb_Chr24g0395151' => 'lal', 'Lj1A1231T40' => 'lonja', 'Lj1A221T48' => 'lonja', 'Lj1C924T12' => 'lonja', 'Lj2C993G6' => 'lonja', 'Lj3g0005790' => 'lja', 'Lj3g0015432' => 'lja', 'Lj3g0017722' => 'lja', 'Lj3g0018497' => 'lja', 'Lj4g0025071' => 'lja', 'Lsat_1_v5_gn_1_129680' => 'lsa', 'Lsat_1_v5_gn_2_25321' => 'lsa', 'Lsat_1_v5_gn_2_95461' => 'lsa', 'Lsat_1_v5_gn_4_159620' => 'lsa', 'Lsat_1_v5_gn_6_41301' => 'lsa', 'Lsat_1_v5_gn_6_74660' => 'lsa', 'Lsat_1_v5_gn_7_11520' => 'lsa', 'Lsat_1_v5_gn_9_67680' => 'lsa', 'Manes.04G008300' => 'mes', 'Manes.04G008400' => 'mes', 'Manes.04G026500' => 'mes', 'Manes.10G135300' => 'mes', 'Manes.11G157300' => 'mes', 'Manes.12G074000' => 'mes', 'Manes.16G006200' => 'mes', 'Manes.17G026400' => 'mes', 'Mapoly0024s0086' => 'mpo', 'Mapoly0024s0087' => 'mpo', 'Mapoly0071s0057' => 'mpo', 'Mapoly0204s0012' => 'mpo', 'MBI04_g37681_MAGBIO' => 'mbi', 'MBI05_g17779_MAGBIO' => 'mbi', 'MBI12_g31184_MAGBIO' => 'mbi', 'MBI17_g11083_MAGBIO' => 'mbi', 'MBI18_g03883_MAGBIO' => 'mbi', 'MBI18_g28940_MAGBIO' => 'mbi', 'MCO01G690' => 'mco', 'MD03G1109900' => 'mdo', 'MD03G1134800' => 'mdo', 'MD05G1348000' => 'mdo', 'MD10G1322400' => 'mdo', 'MD11G1123300' => 'mdo', 'MD11G1157600' => 'mdo', 'Medtr2g084875' => 'mtr', 'Medtr2g088130' => 'mtr', 'Medtr4g055310' => 'mtr', 'Medtr4g061070' => 'mtr', 'Medtr4g132250' => 'mtr', 'MELO3C004795.2' => 'cme', 'MELO3C004797.2' => 'cme', 'MELO3C007396.2' => 'cme', 'MELO3C019277.2' => 'cme', 'MELO3C021449.2' => 'cme', 'MELO3C025736.2' => 'cme', 'Migut.D02175' => 'egut', 'Migut.H01573' => 'egut', 'Migut.M01327' => 'egut', 'Migut.N02513' => 'egut', 'MSTRG.14638' => 'ama', 'MSTRG.18632' => 'ama', 'MSTRG.7203' => 'ama', 'Nitab4.5_0000533g0140' => 'nta', 'Nitab4.5_0000888g0150' => 'nta', 'Nitab4.5_0001453g0040' => 'nta', 'Nitab4.5_0002827g0090' => 'nta', 'Nitab4.5_0003082g0040' => 'nta', 'Nitab4.5_0007799g0040' => 'nta', 'Nitab4.5_0008983g0010' => 'nta', 'Nitab4.5_0009017g0020' => 'nta', 'Nn1g02132' => 'nnu', 'Nn1g03492' => 'nnu', 'Nn1g03493' => 'nnu', 'Nn1g03494' => 'nnu', 'Nn1g07164' => 'nnu', 'Nn1g07291' => 'nnu', 'Nn2g10655' => 'nnu', 'Nn2g11652' => 'nnu', 'Nn2g14008' => 'nnu', 'Nn3g17476' => 'nnu', 'Nn3g17477' => 'nnu', 'Nn4g22370' => 'nnu', 'Nn4g25255' => 'nnu', 'Nn5g27755' => 'nnu', 'Nn6g34260' => 'nnu', 'Nn6g35041' => 'nnu', 'Oeu005924.1' => 'oeu', 'Oeu008383.1' => 'oeu', 'Oeu014928.1' => 'oeu', 'Oeu019889.1' => 'oeu', 'Oeu022271.1' => 'oeu', 'Oeu025271.1' => 'oeu', 'Oeu036302.1' => 'oeu', 'Oeu044100.1' => 'oeu', 'Os01g0528300' => 'osa', 'Os03g0286200' => 'osa', 'Os04g0406600' => 'osa', 'Os07g0512000' => 'osa', 'Os07g0694600' => 'osa', 'Os08g0411000' => 'osa', 'Os09g0565700' => 'osa', 'Os09g0566050' => 'osa', 'Os10g0523700' => 'osa', 'Peaxi162Scf00002g00514' => 'pax', 'Peaxi162Scf00047g01817' => 'pax', 'Peaxi162Scf00114g00001' => 'pax', 'Peaxi162Scf00147g00613' => 'pax', 'Peaxi162Scf00389g00425' => 'pax', 'PGR042G1139' => 'pgr', 'PGR042G3273' => 'pgr', 'PGR102G2180' => 'pgr', 'PGR119G0234' => 'pgr', 'PGR119G0668' => 'pgr', 'PGSC0003DMG400007122' => 'stu', 'PGSC0003DMG400016478' => 'stu', 'PGSC0003DMG400025374' => 'stu', 'PGSC0003DMG400026536' => 'stu', 'Phvul.003G079600' => 'pvu', 'Phvul.005G115600' => 'pvu', 'Phvul.005G127100' => 'pvu', 'Phvul.006G149500' => 'pvu', 'Phvul.006G149600' => 'pvu', 'Phvul.011G071800' => 'pvu', 'Phvul.011G090400' => 'pvu', 'Potri.004G013400' => 'ptr', 'Potri.004G188100' => 'ptr', 'Potri.008G195500' => 'ptr', 'Potri.009G148800' => 'ptr', 'Potri.011G004700' => 'ptr', 'Pp3c17_22810' => 'ppa', 'Pp3c18_4480' => 'ppa', 'Pp3c19_13030' => 'ppa', 'Pp3c1_33620' => 'ppa', 'Pp3c2_9380' => 'ppa', 'PRCOL_00001023' => 'pco', 'Prupe.3G216300' => 'ppe', 'Prupe.4G019500' => 'ppe', 'Prupe.6G092500' => 'ppe', 'Prupe.6G119200' => 'ppe', 'Psat0s1945g0080' => 'psa', 'Psat0s4167g0040' => 'psa', 'Psat1g185800' => 'psa', 'Psat4g006440' => 'psa', 'Psat4g006480' => 'psa', 'Psat4g168120' => 'psa', 'Psat5g255680' => 'psa', 'Psat5g261760' => 'psa', 'Psat7g222120' => 'psa', 'PSO063G7252' => 'pso', 'PSO170G4778' => 'pso', 'PSO210G2249' => 'pso', 'PSO339G2411' => 'pso', 'PSO339G2457' => 'pso', 'PSO339G2854' => 'pso', 'PSO339G4288' => 'pso', 'PSO339G4615' => 'pso', 'PSO384G2796' => 'pso', 'PSO384G2940' => 'pso', 'PSO384G4227' => 'pso', 'PSO478G1425' => 'pso', 'PSO541G3863' => 'pso', 'PSO675G0507' => 'pso', 'PSO782G0338' => 'pso', 'PSO832G0644' => 'pso', 'QL01p013664' => 'qlo', 'QL01p036598' => 'qlo', 'QL05p072984' => 'qlo', 'QL08p005768' => 'qlo', 'QL08p032743' => 'qlo', 'QL93p0073_0439' => 'qlo', 'QL93p0073_0444' => 'qlo', 'RcHm_v2.0_Chr5g0002851' => 'rch', 'RcHm_v2.0_Chr5g0055201' => 'rch', 'RcHm_v2.0_Chr5g0061191' => 'rch', 'RcHm_v2.0_Chr7g0203231' => 'rch', 'Rhsim01G0208100' => 'rsi', 'Rhsim01G0208200' => 'rsi', 'Rhsim02G0106500' => 'rsi', 'Rhsim03G0107900' => 'rsi', 'Rhsim06G0163400' => 'rsi', 'Rhsim13G0105200' => 'rsi', 'Sabra04G0006300' => 'sbr', 'Sabra04G0127000' => 'sbr', 'Sabra08G0148700' => 'sbr', 'Sabra09G0117400' => 'sbr', 'SalBow1G3326' => 'sbo', 'SalBow3G3228' => 'sbo', 'SalBow6G1634' => 'sbo', 'SalBow6G3603' => 'sbo', 'SalBow6G5266' => 'sbo', 'SalBow7G2265' => 'sbo', 'SalBow8G0850' => 'sbo', 'SalBow8G2592' => 'sbo', 'Sc05g0009240' => 'sci', 'Sc12g0002300' => 'sci', 'Sc21g0000100' => 'sci', 'Sc21g0004720' => 'sci', 'Sed0002949' => 'sed', 'Sed0004114' => 'sed', 'Sed0004306' => 'sed', 'Sed0006172' => 'sed', 'Sed0008413' => 'sed', 'Sed0013809' => 'sed', 'Sed0019556' => 'sed', 'SEGI_03570' => 'sgi', 'SEGI_07859' => 'sgi', 'SEGI_15042' => 'sgi', 'SEGI_16263' => 'sgi', 'SEGI_16552' => 'sgi', 'SEGI_24331' => 'sgi', 'SEGI_27316' => 'sgi', 'SEGI_29521' => 'sgi', 'SEGI_41342' => 'sgi', 'SGA_v2.0_scaffold27G11617' => 'sas', 'SGA_v2.0_scaffold316G48428' => 'sas', 'SGA_v2.0_scaffold49G18261' => 'sas', 'SGA_v2.0_scaffold7G03831' => 'sas', 'SGA_v2.0_scaffold93G28359' => 'sas', 'SHI02210' => 'shi', 'SHI06028' => 'shi', 'SHI06321' => 'shi', 'SMO111G0012' => 'smo', 'SMO228G0080' => 'smo', 'SMO356G0756' => 'smo', 'Solyc02g080620.3' => 'sly', 'Solyc06g074530.1' => 'sly', 'Solyc11g066890.1' => 'sly', 'Solyc11g072520.3' => 'sly', 'Sopen02g025330' => 'spe', 'Sopen06g031000' => 'spe', 'Sopen09g008240' => 'spe', 'Sopen09g025210' => 'spe', 'Sopen11g026600' => 'spe', 'Sopen11g030170' => 'spe', 'Sp1g10420' => 'spa', 'Sp3g06570' => 'spa', 'Sp4g10660' => 'spa', 'Sp5g16460' => 'spa', 'Sp6g22710' => 'spa', 'TAR365G0112' => 'tar', 'TAR369G0717' => 'tar', 'TAR374G0976' => 'tar', 'TAR623G1128' => 'tar', 'TAR626G1937' => 'tar', 'TAR627G0123' => 'tar', 'TAR628G0305' => 'tar', 'TAR636G1176' => 'tar', 'TAR636G2442' => 'tar', 'THA.LOC104800556' => 'tha', 'THA.LOC104809501' => 'tha', 'THA.LOC104815126' => 'tha', 'THA.LOC104815732' => 'tha', 'THA.LOC104823528' => 'tha', 'Thecc.02G365600' => 'tca', 'Thecc.06G222300' => 'tca', 'Thecc.09G261800' => 'tca', 'Thecc.09G291400' => 'tca', 'Thhalv10003028m.g' => 'esa', 'Thhalv10007886m.g' => 'esa', 'Thhalv10016085m.g' => 'esa', 'Thhalv10016681m.g' => 'esa', 'Thhalv10020951m.g' => 'esa', 'TPR.G15598' => 'tpr', 'TPR.G29305' => 'tpr', 'TPR.G32395' => 'tpr', 'TPR.G36998' => 'tpr', 'TPR.G4227' => 'tpr', 'TWI18G1433' => 'twi', 'TWI31G0755' => 'twi', 'TWI38G0912' => 'twi', 'TWI75G1097' => 'twi', 'TWI75G1619' => 'twi', 'TWI79G1336' => 'twi', 'unitig_0.g943' => 'ugi', 'unitig_0.g944' => 'ugi', 'unitig_22.g6646' => 'ugi', 'unitig_37.g12681' => 'ugi', 'unitig_8.g3290' => 'ugi', 'vmacro03278' => 'vma', 'vmacro12197' => 'vma', 'vmacro14478' => 'vma', 'vmacro15787' => 'vma', 'vmacro15789' => 'vma', 'vmacro15790' => 'vma', 'vmacro15806' => 'vma', 'vmacro22907' => 'vma', 'vmacro22908' => 'vma', 'vmacro22909' => 'vma', 'vmacro23108' => 'vma', 'VMungo0540G0540' => 'vmu', 'VMungo0540G2468' => 'vmu', 'VMungo1080G0390' => 'vmu', 'VMungo1080G1165' => 'vmu', 'VMungo1127G0170' => 'vmu', 'VMungo1127G2099' => 'vmu', 'VMungo1215G3013' => 'vmu', 'Zm00001eb013110' => 'zma', 'Zm00001eb084260' => 'zma', 'Zm00001eb096110' => 'zma', 'Zm00001eb217510' => 'zma', 'Zm00001eb322550' => 'zma', 'Zm00001eb390770' => 'zma', 'Zm00001eb397170' => 'zma', 'Zm00001eb404610' => 'zma', 'Zm00001eb421790' => 'zma' ) $gf_id = 'HOM05D000911' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000911' ) $data_identifier = 'HOM05D000911' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 16, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 5, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 6, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 8, 'nnu' => (int) 16, 'oeu' => (int) 8, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 5, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 16, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421790' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000911', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27780' => 'bna', 'A03p35380' => 'bna', 'A04p21160' => 'bna', 'A05p40570' => 'bna', 'A06p26900' => 'bna', 'A08p33230' => 'bna', 'A09p65960' => 'bna', 'A10p18290' => 'bna', 'Aa31LG1G12990' => 'aar', 'Aa31LG1G2980' => 'aar', 'Aa31LG4G14320' => 'aar', 'Aa31LG7G11800' => 'aar', 'Aa31sc36G50' => 'aar', 'Aa31sc36G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3721' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5459' => 'aag', 'Actinidia03028' => 'ach', 'Actinidia03753' => 'ach', 'Actinidia04187' => 'ach', 'Actinidia05509' => 'ach', 'Actinidia24180' => 'ach', 'Actinidia26906' => 'ach', 'Actinidia37097' => 'ach', 'Actinidia38249' => 'ach', 'Ah.01g003470' => 'amhyb', 'Ah.01g004580' => 'amhyb', 'Ah.01g014850' => 'amhyb', 'Ah.01g016830' => 'amhyb', 'Ah.14g088000' => 'amhyb', 'AL1G22980' => 'aly', 'AL3G18990' => 'aly', 'AL4G22440' => 'aly', 'AL4G33180' => 'aly', 'AL5G22920' => 'aly', 'AL6G33660' => 'aly', 'AL8G20720' => 'aly', 'Aqoxy1G00935' => 'aox', 'Aqoxy1G02094' => 'aox', 'Aqoxy2G01239' => 'aox', 'Aqoxy4G01870' => 'aox', 'Aqoxy7G00450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.36ZVTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71EM27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5D6C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH3WRE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3NCM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RIM768' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YB5YRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z36GDV' => 'arhy', 'AT1G08250' => 'ath', 'AT1G11790' => 'ath', 'AT2G27820' => 'ath', 'AT3G07630' => 'ath', 'AT3G44720' => 'ath', 'AT5G22630' => 'ath', 'ATR0693G304' => 'atr', 'ATR0794G109' => 'atr', 'ATR0820G120' => 'atr', 'ATR1159G064' => 'atr', 'Atru.chr10.2239' => 'acertr', 'Atru.chr3.3371' => 'acertr', 'Atru.chr6.3202' => 'acertr', 'AUR62006499' => 'cqu', 'AUR62012718' => 'cqu', 'AUR62021938' => 'cqu', 'AUR62023932' => 'cqu', 'AUR62025034' => 'cqu', 'AUR62025035' => 'cqu', 'AUR62038307' => 'cqu', 'AUR62043466' => 'cqu', 'BcaB02g10748' => 'bca', 'BcaB03g13231' => 'bca', 'BcaB03g14689' => 'bca', 'BcaB05g22716' => 'bca', 'BcaB06g28172' => 'bca', 'BcaB08g36413' => 'bca', 'BcaC01g02186' => 'bca', 'BcaC01g04272' => 'bca', 'BcaC02g08080' => 'bca', 'BcaC02g08227' => 'bca', 'BcaC03g13901' => 'bca', 'BcaC04g19593' => 'bca', 'BcaC04g20874' => 'bca', 'BcaC05g29557' => 'bca', 'BcaC06g35505' => 'bca', 'BcaC07g41954' => 'bca', 'BcaC07g41955' => 'bca', 'BcaC07g41956' => 'bca', 'BcaC07g42519' => 'bca', 'BcaC07g42520' => 'bca', 'BcaC07g42523' => 'bca', 'BcaC07g42524' => 'bca', 'BcaC07g42525' => 'bca', 'BcaC08g47480' => 'bca', 'BcaC08g47481' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00530' => 'bna', 'BolC2t07178H' => 'bol', 'BolC3t16567H' => 'bol', 'BolC4t27234H' => 'bol', 'BolC5t29728H' => 'bol', 'BolC5t34622H' => 'bol', 'BolC6t40321H' => 'bol', 'BolC7t42028H' => 'bol', 'BolC8t49125H' => 'bol', 'BolC8t52538H' => 'bol', 'BolC8t52539H' => 'bol', 'BolC9t56681H' => 'bol', 'BolC9t58266H' => 'bol', 'BolSC21t60294H' => 'bol', 'BraA02t05670Z' => 'bra', 'BraA03t12716Z' => 'bra', 'BraA04t17685Z' => 'bra', 'BraA05t22788Z' => 'bra', 'BraA06t24032Z' => 'bra', 'BraA06t25625Z' => 'bra', 'BraA07t27930Z' => 'bra', 'BraA08t35242Z' => 'bra', 'BraA09t38609Z' => 'bra', 'BraA10t43905Z' => 'bra', 'C02p11060' => 'bna', 'C03p42990' => 'bna', 'C03p67310' => 'bna', 'C04p56990' => 'bna', 'C04p58660' => 'bna', 'C05p09890' => 'bna', 'C05p59680' => 'bna', 'C06p19830' => 'bna', 'C06p53040' => 'bna', 'C07p15230' => 'bna', 'C08p50070' => 'bna', 'C08p50090' => 'bna', 'C09p38330' => 'bna', 'C09p53940' => 'bna', 'CAN.G1014.1' => 'can', 'CAN.G644.30' => 'can', 'CAN.G84.47' => 'can', 'CAN.G919.8' => 'can', 'CANSAT54G0113' => 'cansat', 'CANSAT54G1286' => 'cansat', 'CANSAT64G1020' => 'cansat', 'CARHR008080' => 'chi', 'CARHR008090' => 'chi', 'CARHR012130' => 'chi', 'CARHR038390' => 'chi', 'CARHR082330' => 'chi', 'CARHR120520' => 'chi', 'CARHR151470' => 'chi', 'CARHR190950' => 'chi', 'Carub.0001s0760' => 'cru', 'Carub.0001s1146' => 'cru', 'Carub.0003s0721' => 'cru', 'Carub.0004s0858' => 'cru', 'Carub.0005s1040' => 'cru', 'Carub.0006s2035' => 'cru', 'Carub.0015s0005' => 'cru', 'Ca_01607_v3' => 'car', 'Ca_01677_v3' => 'car', 'Ca_06087_v3' => 'car', 'Ca_19238_v3' => 'car', 'Ca_19373_v3' => 'car', 'Ca_21079_v3' => 'car', 'CBR_g54016' => 'cbr', 'CBR_g54018' => 'cbr', 'CBR_g54020' => 'cbr', 'Cc01_g09780' => 'ccan', 'Cc01_g11680' => 'ccan', 'Cc02_g15610' => 'ccan', 'Cc05_g04350' => 'ccan', 'Cc09_g01580' => 'ccan', 'CDE01G0795' => 'cde', 'CDE02G2024' => 'cde', 'CDE02G2260' => 'cde', 'CDE02G4561' => 'cde', 'CDE05G2733' => 'cde', 'CDE05G3422' => 'cde', 'CDE06G2003' => 'cde', 'CDE08G0576' => 'cde', 'CDE09G0048' => 'cde', 'CDE11G0805' => 'cde', 'Cfa003644' => 'cfa', 'Cfa006290' => 'cfa', 'Cfa010080' => 'cfa', 'Cfa011376' => 'cfa', 'Cfa011576' => 'cfa', 'Cfa011577' => 'cfa', 'Cfa014389' => 'cfa', 'Ciclev10006044m.g' => 'ccl', 'Ciclev10006954m.g' => 'ccl', 'Ciclev10015131m.g' => 'ccl', 'Ciclev10015580m.g' => 'ccl', 'Ciclev10028359m.g' => 'ccl', 'Ciclev10028573m.g' => 'ccl', 'CiPaw.03G159300' => 'cil', 'CiPaw.04G115100' => 'cil', 'CiPaw.09G092800' => 'cil', 'CiPaw.10G071800' => 'cil', 'CiPaw.13G105800' => 'cil', 'CiPaw.13G141000' => 'cil', 'CiPaw.14G103400' => 'cil', 'ClCG01G012700' => 'cla', 'ClCG01G012720' => 'cla', 'ClCG01G021920' => 'cla', 'ClCG02G008870' => 'cla', 'ClCG02G020840' => 'cla', 'ClCG02G021930' => 'cla', 'COL.COLO4_19302' => 'col', 'COL.COLO4_25262' => 'col', 'COL.COLO4_31788' => 'col', 'Cpa.g.c34684' => 'cpa', 'Cpa.g.c36520.1' => 'cpa', 'Cpa.g.c45626' => 'cpa', 'Cpa.g.sc121.17' => 'cpa', 'Cpa.g.sc13.22' => 'cpa', 'Cpa.g.sc87.88' => 'cpa', 'Cre06.g261800' => 'cre', 'CsaV3_1G014500' => 'csa', 'CsaV3_1G014510' => 'csa', 'CsaV3_2G034880' => 'csa', 'CsaV3_6G014760' => 'csa', 'CsaV3_6G021500' => 'csa', 'CsaV3_6G048980' => 'csa', 'CSS0002511' => 'camsi', 'CSS0007556' => 'camsi', 'CSS0008532' => 'camsi', 'CSS0009709' => 'camsi', 'CSS0010486' => 'camsi', 'CSS0016768' => 'camsi', 'CSS0023512' => 'camsi', 'CSS0025341' => 'camsi', 'CSS0027999' => 'camsi', 'CSS0028944' => 'camsi', 'CSS0032292' => 'camsi', 'CSS0032464' => 'camsi', 'CSS0037153' => 'camsi', 'CSS0039256' => 'camsi', 'CSS0048392' => 'camsi', 'CSS0050458' => 'camsi', 'DCAR_004224' => 'dca', 'DCAR_006147' => 'dca', 'DCAR_006465' => 'dca', 'DCAR_008159' => 'dca', 'DCAR_012164' => 'dca', 'DCAR_019764' => 'dca', 'Dinv05418' => 'din', 'Dinv10839' => 'din', 'Dinv12521' => 'din', 'Dinv13900' => 'din', 'Dinv29426' => 'din', 'Duzib150G0263' => 'dzi', 'Duzib168G1178' => 'dzi', 'Duzib168G1924' => 'dzi', 'Duzib170G0299' => 'dzi', 'Duzib170G0813' => 'dzi', 'Duzib235G1128' => 'dzi', 'Duzib248G1060' => 'dzi', 'ECA232G1910' => 'eca', 'ECA233G4621' => 'eca', 'ECA238G1216' => 'eca', 'ECA238G1784' => 'eca', 'ECA248G1242' => 'eca', 'EL10Ac8g20071' => 'bvu', 'EL10Ac9g21086' => 'bvu', 'EL10Ac9g22407' => 'bvu', 'EL10Ac9g22412' => 'bvu', 'Eucgr.A01119' => 'egr', 'Eucgr.E04043' => 'egr', 'Eucgr.J00428' => 'egr', 'Eucgr.J00958' => 'egr', 'FAN11G3091' => 'fan', 'FAN11G3651' => 'fan', 'FAN16G2566' => 'fan', 'FAN21G3155' => 'fan', 'FAN21G3400' => 'fan', 'FAN21G3543' => 'fan', 'FAN25G0234' => 'fan', 'FAN25G1422' => 'fan', 'FAN25G3392' => 'fan', 'FvH4_3g01940' => 'fve', 'FvH4_3g29870' => 'fve', 'FvH4_3g33680' => 'fve', 'Glyma.09G004200' => 'gma', 'Glyma.11G151288' => 'gma', 'Glyma.11G189100' => 'gma', 'Glyma.12G072500' => 'gma', 'Glyma.12G085500' => 'gma', 'Glyma.12G181800' => 'gma', 'Glyma.12G193000' => 'gma', 'Glyma.13G309300' => 'gma', 'Glyma.13G319000' => 'gma', 'Glyma.17G012600' => 'gma', 'Gohir.A06G148600' => 'ghi', 'Gohir.A07G115800' => 'ghi', 'Gohir.A08G003600' => 'ghi', 'Gohir.A09G093300' => 'ghi', 'Gohir.A09G105400' => 'ghi', 'Gohir.A09G105500' => 'ghi', 'Gohir.D06G154600' => 'ghi', 'Gohir.D07G120200' => 'ghi', 'Gohir.D08G013900' => 'ghi', 'Gohir.D09G093100' => 'ghi', 'Gohir.D09G102200' => 'ghi', 'Gohir.D09G102300' => 'ghi', 'Gorai.001G129400' => 'gra', 'Gorai.004G008200' => 'gra', 'Gorai.006G109800' => 'gra', 'Gorai.006G119500' => 'gra', 'Gorai.006G121300' => 'gra', 'Gorai.010G180700' => 'gra', 'GSVIVG01012716001' => 'vvi', 'GSVIVG01025118001' => 'vvi', 'GSVIVG01030439001' => 'vvi', 'GSVIVG01031397001' => 'vvi', 'HanXRQChr01g0004201' => 'han', 'HanXRQChr02g0054941' => 'han', 'HanXRQChr05g0141811' => 'han', 'HanXRQChr07g0197751' => 'han', 'HanXRQChr11g0346691' => 'han', 'HanXRQChr13g0396971' => 'han', 'HanXRQChr14g0432951' => 'han', 'HanXRQChr14g0452001' => 'han', 'HanXRQChr15g0496681' => 'han', 'HanXRQChr17g0557491' => 'han', 'HanXRQChr17g0557501' => 'han', 'Haze_06809' => 'cav', 'Haze_12852' => 'cav', 'Haze_15850' => 'cav', 'Haze_23446' => 'cav', 'Haze_23942' => 'cav', 'Haze_23943' => 'cav', 'Hma1.2p1_0091F.1_g046450' => 'hma', 'Hma1.2p1_0128F.1_g059910' => 'hma', 'Hma1.2p1_0249F.1_g102260' => 'hma', 'Hma1.2p1_0453F.1_g156190' => 'hma', 'Hma1.2p1_0695F.1_g204380' => 'hma', 'Hma1.2p1_0749F.1_g212650' => 'hma', 'Hma1.2p1_2156F.1_g315420' => 'hma', 'Hma1.2p1_2686F.1_g326940' => 'hma', 'HPP92_006428' => 'vpl', 'HPP92_012069' => 'vpl', 'HPP92_014129' => 'vpl', 'HPP92_014133' => 'vpl', 'HPP92_017315' => 'vpl', 'HPP92_026445' => 'vpl', 'HPP92_026446' => 'vpl', 'Hund00774' => 'sun', 'Hund07682' => 'sun', 'Hund21413' => 'sun', 'Hund23462' => 'sun', 'Hund23463' => 'sun', 'Lalb_Chr03g0027911' => 'lal', 'Lalb_Chr13g0304271' => 'lal', 'Lalb_Chr19g0137471' => 'lal', 'Lalb_Chr22g0350651' => 'lal', 'Lalb_Chr24g0395151' => 'lal', 'Lj1A1231T40' => 'lonja', 'Lj1A221T48' => 'lonja', 'Lj1C924T12' => 'lonja', 'Lj2C993G6' => 'lonja', 'Lj3g0005790' => 'lja', 'Lj3g0015432' => 'lja', 'Lj3g0017722' => 'lja', 'Lj3g0018497' => 'lja', 'Lj4g0025071' => 'lja', 'Lsat_1_v5_gn_1_129680' => 'lsa', 'Lsat_1_v5_gn_2_25321' => 'lsa', 'Lsat_1_v5_gn_2_95461' => 'lsa', 'Lsat_1_v5_gn_4_159620' => 'lsa', 'Lsat_1_v5_gn_6_41301' => 'lsa', 'Lsat_1_v5_gn_6_74660' => 'lsa', 'Lsat_1_v5_gn_7_11520' => 'lsa', 'Lsat_1_v5_gn_9_67680' => 'lsa', 'Manes.04G008300' => 'mes', 'Manes.04G008400' => 'mes', 'Manes.04G026500' => 'mes', 'Manes.10G135300' => 'mes', 'Manes.11G157300' => 'mes', 'Manes.12G074000' => 'mes', 'Manes.16G006200' => 'mes', 'Manes.17G026400' => 'mes', 'Mapoly0024s0086' => 'mpo', 'Mapoly0024s0087' => 'mpo', 'Mapoly0071s0057' => 'mpo', 'Mapoly0204s0012' => 'mpo', 'MBI04_g37681_MAGBIO' => 'mbi', 'MBI05_g17779_MAGBIO' => 'mbi', 'MBI12_g31184_MAGBIO' => 'mbi', 'MBI17_g11083_MAGBIO' => 'mbi', 'MBI18_g03883_MAGBIO' => 'mbi', 'MBI18_g28940_MAGBIO' => 'mbi', 'MCO01G690' => 'mco', 'MD03G1109900' => 'mdo', 'MD03G1134800' => 'mdo', 'MD05G1348000' => 'mdo', 'MD10G1322400' => 'mdo', 'MD11G1123300' => 'mdo', 'MD11G1157600' => 'mdo', 'Medtr2g084875' => 'mtr', 'Medtr2g088130' => 'mtr', 'Medtr4g055310' => 'mtr', 'Medtr4g061070' => 'mtr', 'Medtr4g132250' => 'mtr', 'MELO3C004795.2' => 'cme', 'MELO3C004797.2' => 'cme', 'MELO3C007396.2' => 'cme', 'MELO3C019277.2' => 'cme', 'MELO3C021449.2' => 'cme', 'MELO3C025736.2' => 'cme', 'Migut.D02175' => 'egut', 'Migut.H01573' => 'egut', 'Migut.M01327' => 'egut', 'Migut.N02513' => 'egut', 'MSTRG.14638' => 'ama', 'MSTRG.18632' => 'ama', 'MSTRG.7203' => 'ama', 'Nitab4.5_0000533g0140' => 'nta', 'Nitab4.5_0000888g0150' => 'nta', 'Nitab4.5_0001453g0040' => 'nta', 'Nitab4.5_0002827g0090' => 'nta', 'Nitab4.5_0003082g0040' => 'nta', 'Nitab4.5_0007799g0040' => 'nta', 'Nitab4.5_0008983g0010' => 'nta', 'Nitab4.5_0009017g0020' => 'nta', 'Nn1g02132' => 'nnu', 'Nn1g03492' => 'nnu', 'Nn1g03493' => 'nnu', 'Nn1g03494' => 'nnu', 'Nn1g07164' => 'nnu', 'Nn1g07291' => 'nnu', 'Nn2g10655' => 'nnu', 'Nn2g11652' => 'nnu', 'Nn2g14008' => 'nnu', 'Nn3g17476' => 'nnu', 'Nn3g17477' => 'nnu', 'Nn4g22370' => 'nnu', 'Nn4g25255' => 'nnu', 'Nn5g27755' => 'nnu', 'Nn6g34260' => 'nnu', 'Nn6g35041' => 'nnu', 'Oeu005924.1' => 'oeu', 'Oeu008383.1' => 'oeu', 'Oeu014928.1' => 'oeu', 'Oeu019889.1' => 'oeu', 'Oeu022271.1' => 'oeu', 'Oeu025271.1' => 'oeu', 'Oeu036302.1' => 'oeu', 'Oeu044100.1' => 'oeu', 'Os01g0528300' => 'osa', 'Os03g0286200' => 'osa', 'Os04g0406600' => 'osa', 'Os07g0512000' => 'osa', 'Os07g0694600' => 'osa', 'Os08g0411000' => 'osa', 'Os09g0565700' => 'osa', 'Os09g0566050' => 'osa', 'Os10g0523700' => 'osa', 'Peaxi162Scf00002g00514' => 'pax', 'Peaxi162Scf00047g01817' => 'pax', 'Peaxi162Scf00114g00001' => 'pax', 'Peaxi162Scf00147g00613' => 'pax', 'Peaxi162Scf00389g00425' => 'pax', 'PGR042G1139' => 'pgr', 'PGR042G3273' => 'pgr', 'PGR102G2180' => 'pgr', 'PGR119G0234' => 'pgr', 'PGR119G0668' => 'pgr', 'PGSC0003DMG400007122' => 'stu', 'PGSC0003DMG400016478' => 'stu', 'PGSC0003DMG400025374' => 'stu', 'PGSC0003DMG400026536' => 'stu', 'Phvul.003G079600' => 'pvu', 'Phvul.005G115600' => 'pvu', 'Phvul.005G127100' => 'pvu', 'Phvul.006G149500' => 'pvu', 'Phvul.006G149600' => 'pvu', 'Phvul.011G071800' => 'pvu', 'Phvul.011G090400' => 'pvu', 'Potri.004G013400' => 'ptr', 'Potri.004G188100' => 'ptr', 'Potri.008G195500' => 'ptr', 'Potri.009G148800' => 'ptr', 'Potri.011G004700' => 'ptr', 'Pp3c17_22810' => 'ppa', 'Pp3c18_4480' => 'ppa', 'Pp3c19_13030' => 'ppa', 'Pp3c1_33620' => 'ppa', 'Pp3c2_9380' => 'ppa', 'PRCOL_00001023' => 'pco', 'Prupe.3G216300' => 'ppe', 'Prupe.4G019500' => 'ppe', 'Prupe.6G092500' => 'ppe', 'Prupe.6G119200' => 'ppe', 'Psat0s1945g0080' => 'psa', 'Psat0s4167g0040' => 'psa', 'Psat1g185800' => 'psa', 'Psat4g006440' => 'psa', 'Psat4g006480' => 'psa', 'Psat4g168120' => 'psa', 'Psat5g255680' => 'psa', 'Psat5g261760' => 'psa', 'Psat7g222120' => 'psa', 'PSO063G7252' => 'pso', 'PSO170G4778' => 'pso', 'PSO210G2249' => 'pso', 'PSO339G2411' => 'pso', 'PSO339G2457' => 'pso', 'PSO339G2854' => 'pso', 'PSO339G4288' => 'pso', 'PSO339G4615' => 'pso', 'PSO384G2796' => 'pso', 'PSO384G2940' => 'pso', 'PSO384G4227' => 'pso', 'PSO478G1425' => 'pso', 'PSO541G3863' => 'pso', 'PSO675G0507' => 'pso', 'PSO782G0338' => 'pso', 'PSO832G0644' => 'pso', 'QL01p013664' => 'qlo', 'QL01p036598' => 'qlo', 'QL05p072984' => 'qlo', 'QL08p005768' => 'qlo', 'QL08p032743' => 'qlo', 'QL93p0073_0439' => 'qlo', 'QL93p0073_0444' => 'qlo', 'RcHm_v2.0_Chr5g0002851' => 'rch', 'RcHm_v2.0_Chr5g0055201' => 'rch', 'RcHm_v2.0_Chr5g0061191' => 'rch', 'RcHm_v2.0_Chr7g0203231' => 'rch', 'Rhsim01G0208100' => 'rsi', 'Rhsim01G0208200' => 'rsi', 'Rhsim02G0106500' => 'rsi', 'Rhsim03G0107900' => 'rsi', 'Rhsim06G0163400' => 'rsi', 'Rhsim13G0105200' => 'rsi', 'Sabra04G0006300' => 'sbr', 'Sabra04G0127000' => 'sbr', 'Sabra08G0148700' => 'sbr', 'Sabra09G0117400' => 'sbr', 'SalBow1G3326' => 'sbo', 'SalBow3G3228' => 'sbo', 'SalBow6G1634' => 'sbo', 'SalBow6G3603' => 'sbo', 'SalBow6G5266' => 'sbo', 'SalBow7G2265' => 'sbo', 'SalBow8G0850' => 'sbo', 'SalBow8G2592' => 'sbo', 'Sc05g0009240' => 'sci', 'Sc12g0002300' => 'sci', 'Sc21g0000100' => 'sci', 'Sc21g0004720' => 'sci', 'Sed0002949' => 'sed', 'Sed0004114' => 'sed', 'Sed0004306' => 'sed', 'Sed0006172' => 'sed', 'Sed0008413' => 'sed', 'Sed0013809' => 'sed', 'Sed0019556' => 'sed', 'SEGI_03570' => 'sgi', 'SEGI_07859' => 'sgi', 'SEGI_15042' => 'sgi', 'SEGI_16263' => 'sgi', 'SEGI_16552' => 'sgi', 'SEGI_24331' => 'sgi', 'SEGI_27316' => 'sgi', 'SEGI_29521' => 'sgi', 'SEGI_41342' => 'sgi', 'SGA_v2.0_scaffold27G11617' => 'sas', 'SGA_v2.0_scaffold316G48428' => 'sas', 'SGA_v2.0_scaffold49G18261' => 'sas', 'SGA_v2.0_scaffold7G03831' => 'sas', 'SGA_v2.0_scaffold93G28359' => 'sas', 'SHI02210' => 'shi', 'SHI06028' => 'shi', 'SHI06321' => 'shi', 'SMO111G0012' => 'smo', 'SMO228G0080' => 'smo', 'SMO356G0756' => 'smo', 'Solyc02g080620.3' => 'sly', 'Solyc06g074530.1' => 'sly', 'Solyc11g066890.1' => 'sly', 'Solyc11g072520.3' => 'sly', 'Sopen02g025330' => 'spe', 'Sopen06g031000' => 'spe', 'Sopen09g008240' => 'spe', 'Sopen09g025210' => 'spe', 'Sopen11g026600' => 'spe', 'Sopen11g030170' => 'spe', 'Sp1g10420' => 'spa', 'Sp3g06570' => 'spa', 'Sp4g10660' => 'spa', 'Sp5g16460' => 'spa', 'Sp6g22710' => 'spa', 'TAR365G0112' => 'tar', 'TAR369G0717' => 'tar', 'TAR374G0976' => 'tar', 'TAR623G1128' => 'tar', 'TAR626G1937' => 'tar', 'TAR627G0123' => 'tar', 'TAR628G0305' => 'tar', 'TAR636G1176' => 'tar', 'TAR636G2442' => 'tar', 'THA.LOC104800556' => 'tha', 'THA.LOC104809501' => 'tha', 'THA.LOC104815126' => 'tha', 'THA.LOC104815732' => 'tha', 'THA.LOC104823528' => 'tha', 'Thecc.02G365600' => 'tca', 'Thecc.06G222300' => 'tca', 'Thecc.09G261800' => 'tca', 'Thecc.09G291400' => 'tca', 'Thhalv10003028m.g' => 'esa', 'Thhalv10007886m.g' => 'esa', 'Thhalv10016085m.g' => 'esa', 'Thhalv10016681m.g' => 'esa', 'Thhalv10020951m.g' => 'esa', 'TPR.G15598' => 'tpr', 'TPR.G29305' => 'tpr', 'TPR.G32395' => 'tpr', 'TPR.G36998' => 'tpr', 'TPR.G4227' => 'tpr', 'TWI18G1433' => 'twi', 'TWI31G0755' => 'twi', 'TWI38G0912' => 'twi', 'TWI75G1097' => 'twi', 'TWI75G1619' => 'twi', 'TWI79G1336' => 'twi', 'unitig_0.g943' => 'ugi', 'unitig_0.g944' => 'ugi', 'unitig_22.g6646' => 'ugi', 'unitig_37.g12681' => 'ugi', 'unitig_8.g3290' => 'ugi', 'vmacro03278' => 'vma', 'vmacro12197' => 'vma', 'vmacro14478' => 'vma', 'vmacro15787' => 'vma', 'vmacro15789' => 'vma', 'vmacro15790' => 'vma', 'vmacro15806' => 'vma', 'vmacro22907' => 'vma', 'vmacro22908' => 'vma', 'vmacro22909' => 'vma', 'vmacro23108' => 'vma', 'VMungo0540G0540' => 'vmu', 'VMungo0540G2468' => 'vmu', 'VMungo1080G0390' => 'vmu', 'VMungo1080G1165' => 'vmu', 'VMungo1127G0170' => 'vmu', 'VMungo1127G2099' => 'vmu', 'VMungo1215G3013' => 'vmu', 'Zm00001eb013110' => 'zma', 'Zm00001eb084260' => 'zma', 'Zm00001eb096110' => 'zma', 'Zm00001eb217510' => 'zma', 'Zm00001eb322550' => 'zma', 'Zm00001eb390770' => 'zma', 'Zm00001eb397170' => 'zma', 'Zm00001eb404610' => 'zma', 'Zm00001eb421790' => 'zma' ), 'gf_id' => 'HOM05D000911', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000911' ), 'data_identifier' => 'HOM05D000911', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000911', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27780' => 'bna', 'A03p35380' => 'bna', 'A04p21160' => 'bna', 'A05p40570' => 'bna', 'A06p26900' => 'bna', 'A08p33230' => 'bna', 'A09p65960' => 'bna', 'A10p18290' => 'bna', 'Aa31LG1G12990' => 'aar', 'Aa31LG1G2980' => 'aar', 'Aa31LG4G14320' => 'aar', 'Aa31LG7G11800' => 'aar', 'Aa31sc36G50' => 'aar', 'Aa31sc36G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3721' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5459' => 'aag', 'Actinidia03028' => 'ach', 'Actinidia03753' => 'ach', 'Actinidia04187' => 'ach', 'Actinidia05509' => 'ach', 'Actinidia24180' => 'ach', 'Actinidia26906' => 'ach', 'Actinidia37097' => 'ach', 'Actinidia38249' => 'ach', 'Ah.01g003470' => 'amhyb', 'Ah.01g004580' => 'amhyb', 'Ah.01g014850' => 'amhyb', 'Ah.01g016830' => 'amhyb', 'Ah.14g088000' => 'amhyb', 'AL1G22980' => 'aly', 'AL3G18990' => 'aly', 'AL4G22440' => 'aly', 'AL4G33180' => 'aly', 'AL5G22920' => 'aly', 'AL6G33660' => 'aly', 'AL8G20720' => 'aly', 'Aqoxy1G00935' => 'aox', 'Aqoxy1G02094' => 'aox', 'Aqoxy2G01239' => 'aox', 'Aqoxy4G01870' => 'aox', 'Aqoxy7G00450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.36ZVTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71EM27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5D6C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH3WRE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3NCM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RIM768' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YB5YRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z36GDV' => 'arhy', 'AT1G08250' => 'ath', 'AT1G11790' => 'ath', 'AT2G27820' => 'ath', 'AT3G07630' => 'ath', 'AT3G44720' => 'ath', 'AT5G22630' => 'ath', 'ATR0693G304' => 'atr', 'ATR0794G109' => 'atr', 'ATR0820G120' => 'atr', 'ATR1159G064' => 'atr', 'Atru.chr10.2239' => 'acertr', 'Atru.chr3.3371' => 'acertr', 'Atru.chr6.3202' => 'acertr', 'AUR62006499' => 'cqu', 'AUR62012718' => 'cqu', 'AUR62021938' => 'cqu', 'AUR62023932' => 'cqu', 'AUR62025034' => 'cqu', 'AUR62025035' => 'cqu', 'AUR62038307' => 'cqu', 'AUR62043466' => 'cqu', 'BcaB02g10748' => 'bca', 'BcaB03g13231' => 'bca', 'BcaB03g14689' => 'bca', 'BcaB05g22716' => 'bca', 'BcaB06g28172' => 'bca', 'BcaB08g36413' => 'bca', 'BcaC01g02186' => 'bca', 'BcaC01g04272' => 'bca', 'BcaC02g08080' => 'bca', 'BcaC02g08227' => 'bca', 'BcaC03g13901' => 'bca', 'BcaC04g19593' => 'bca', 'BcaC04g20874' => 'bca', 'BcaC05g29557' => 'bca', 'BcaC06g35505' => 'bca', 'BcaC07g41954' => 'bca', 'BcaC07g41955' => 'bca', 'BcaC07g41956' => 'bca', 'BcaC07g42519' => 'bca', 'BcaC07g42520' => 'bca', 'BcaC07g42523' => 'bca', 'BcaC07g42524' => 'bca', 'BcaC07g42525' => 'bca', 'BcaC08g47480' => 'bca', 'BcaC08g47481' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00530' => 'bna', 'BolC2t07178H' => 'bol', 'BolC3t16567H' => 'bol', 'BolC4t27234H' => 'bol', 'BolC5t29728H' => 'bol', 'BolC5t34622H' => 'bol', 'BolC6t40321H' => 'bol', 'BolC7t42028H' => 'bol', 'BolC8t49125H' => 'bol', 'BolC8t52538H' => 'bol', 'BolC8t52539H' => 'bol', 'BolC9t56681H' => 'bol', 'BolC9t58266H' => 'bol', 'BolSC21t60294H' => 'bol', 'BraA02t05670Z' => 'bra', 'BraA03t12716Z' => 'bra', 'BraA04t17685Z' => 'bra', 'BraA05t22788Z' => 'bra', 'BraA06t24032Z' => 'bra', 'BraA06t25625Z' => 'bra', 'BraA07t27930Z' => 'bra', 'BraA08t35242Z' => 'bra', 'BraA09t38609Z' => 'bra', 'BraA10t43905Z' => 'bra', 'C02p11060' => 'bna', 'C03p42990' => 'bna', 'C03p67310' => 'bna', 'C04p56990' => 'bna', 'C04p58660' => 'bna', 'C05p09890' => 'bna', 'C05p59680' => 'bna', 'C06p19830' => 'bna', 'C06p53040' => 'bna', 'C07p15230' => 'bna', 'C08p50070' => 'bna', 'C08p50090' => 'bna', 'C09p38330' => 'bna', 'C09p53940' => 'bna', 'CAN.G1014.1' => 'can', 'CAN.G644.30' => 'can', 'CAN.G84.47' => 'can', 'CAN.G919.8' => 'can', 'CANSAT54G0113' => 'cansat', 'CANSAT54G1286' => 'cansat', 'CANSAT64G1020' => 'cansat', 'CARHR008080' => 'chi', 'CARHR008090' => 'chi', 'CARHR012130' => 'chi', 'CARHR038390' => 'chi', 'CARHR082330' => 'chi', 'CARHR120520' => 'chi', 'CARHR151470' => 'chi', 'CARHR190950' => 'chi', 'Carub.0001s0760' => 'cru', 'Carub.0001s1146' => 'cru', 'Carub.0003s0721' => 'cru', 'Carub.0004s0858' => 'cru', 'Carub.0005s1040' => 'cru', 'Carub.0006s2035' => 'cru', 'Carub.0015s0005' => 'cru', 'Ca_01607_v3' => 'car', 'Ca_01677_v3' => 'car', 'Ca_06087_v3' => 'car', 'Ca_19238_v3' => 'car', 'Ca_19373_v3' => 'car', 'Ca_21079_v3' => 'car', 'CBR_g54016' => 'cbr', 'CBR_g54018' => 'cbr', 'CBR_g54020' => 'cbr', 'Cc01_g09780' => 'ccan', 'Cc01_g11680' => 'ccan', 'Cc02_g15610' => 'ccan', 'Cc05_g04350' => 'ccan', 'Cc09_g01580' => 'ccan', 'CDE01G0795' => 'cde', 'CDE02G2024' => 'cde', 'CDE02G2260' => 'cde', 'CDE02G4561' => 'cde', 'CDE05G2733' => 'cde', 'CDE05G3422' => 'cde', 'CDE06G2003' => 'cde', 'CDE08G0576' => 'cde', 'CDE09G0048' => 'cde', 'CDE11G0805' => 'cde', 'Cfa003644' => 'cfa', 'Cfa006290' => 'cfa', 'Cfa010080' => 'cfa', 'Cfa011376' => 'cfa', 'Cfa011576' => 'cfa', 'Cfa011577' => 'cfa', 'Cfa014389' => 'cfa', 'Ciclev10006044m.g' => 'ccl', 'Ciclev10006954m.g' => 'ccl', 'Ciclev10015131m.g' => 'ccl', 'Ciclev10015580m.g' => 'ccl', 'Ciclev10028359m.g' => 'ccl', 'Ciclev10028573m.g' => 'ccl', 'CiPaw.03G159300' => 'cil', 'CiPaw.04G115100' => 'cil', 'CiPaw.09G092800' => 'cil', 'CiPaw.10G071800' => 'cil', 'CiPaw.13G105800' => 'cil', 'CiPaw.13G141000' => 'cil', 'CiPaw.14G103400' => 'cil', 'ClCG01G012700' => 'cla', 'ClCG01G012720' => 'cla', 'ClCG01G021920' => 'cla', 'ClCG02G008870' => 'cla', 'ClCG02G020840' => 'cla', 'ClCG02G021930' => 'cla', 'COL.COLO4_19302' => 'col', 'COL.COLO4_25262' => 'col', 'COL.COLO4_31788' => 'col', 'Cpa.g.c34684' => 'cpa', 'Cpa.g.c36520.1' => 'cpa', 'Cpa.g.c45626' => 'cpa', 'Cpa.g.sc121.17' => 'cpa', 'Cpa.g.sc13.22' => 'cpa', 'Cpa.g.sc87.88' => 'cpa', 'Cre06.g261800' => 'cre', 'CsaV3_1G014500' => 'csa', 'CsaV3_1G014510' => 'csa', 'CsaV3_2G034880' => 'csa', 'CsaV3_6G014760' => 'csa', 'CsaV3_6G021500' => 'csa', 'CsaV3_6G048980' => 'csa', 'CSS0002511' => 'camsi', 'CSS0007556' => 'camsi', 'CSS0008532' => 'camsi', 'CSS0009709' => 'camsi', 'CSS0010486' => 'camsi', 'CSS0016768' => 'camsi', 'CSS0023512' => 'camsi', 'CSS0025341' => 'camsi', 'CSS0027999' => 'camsi', 'CSS0028944' => 'camsi', 'CSS0032292' => 'camsi', 'CSS0032464' => 'camsi', 'CSS0037153' => 'camsi', 'CSS0039256' => 'camsi', 'CSS0048392' => 'camsi', 'CSS0050458' => 'camsi', 'DCAR_004224' => 'dca', 'DCAR_006147' => 'dca', 'DCAR_006465' => 'dca', 'DCAR_008159' => 'dca', 'DCAR_012164' => 'dca', 'DCAR_019764' => 'dca', 'Dinv05418' => 'din', 'Dinv10839' => 'din', 'Dinv12521' => 'din', 'Dinv13900' => 'din', 'Dinv29426' => 'din', 'Duzib150G0263' => 'dzi', 'Duzib168G1178' => 'dzi', 'Duzib168G1924' => 'dzi', 'Duzib170G0299' => 'dzi', 'Duzib170G0813' => 'dzi', 'Duzib235G1128' => 'dzi', 'Duzib248G1060' => 'dzi', 'ECA232G1910' => 'eca', 'ECA233G4621' => 'eca', 'ECA238G1216' => 'eca', 'ECA238G1784' => 'eca', 'ECA248G1242' => 'eca', 'EL10Ac8g20071' => 'bvu', 'EL10Ac9g21086' => 'bvu', 'EL10Ac9g22407' => 'bvu', 'EL10Ac9g22412' => 'bvu', 'Eucgr.A01119' => 'egr', 'Eucgr.E04043' => 'egr', 'Eucgr.J00428' => 'egr', 'Eucgr.J00958' => 'egr', 'FAN11G3091' => 'fan', 'FAN11G3651' => 'fan', 'FAN16G2566' => 'fan', 'FAN21G3155' => 'fan', 'FAN21G3400' => 'fan', 'FAN21G3543' => 'fan', 'FAN25G0234' => 'fan', 'FAN25G1422' => 'fan', 'FAN25G3392' => 'fan', 'FvH4_3g01940' => 'fve', 'FvH4_3g29870' => 'fve', 'FvH4_3g33680' => 'fve', 'Glyma.09G004200' => 'gma', 'Glyma.11G151288' => 'gma', 'Glyma.11G189100' => 'gma', 'Glyma.12G072500' => 'gma', 'Glyma.12G085500' => 'gma', 'Glyma.12G181800' => 'gma', 'Glyma.12G193000' => 'gma', 'Glyma.13G309300' => 'gma', 'Glyma.13G319000' => 'gma', 'Glyma.17G012600' => 'gma', 'Gohir.A06G148600' => 'ghi', 'Gohir.A07G115800' => 'ghi', 'Gohir.A08G003600' => 'ghi', 'Gohir.A09G093300' => 'ghi', 'Gohir.A09G105400' => 'ghi', 'Gohir.A09G105500' => 'ghi', 'Gohir.D06G154600' => 'ghi', 'Gohir.D07G120200' => 'ghi', 'Gohir.D08G013900' => 'ghi', 'Gohir.D09G093100' => 'ghi', 'Gohir.D09G102200' => 'ghi', 'Gohir.D09G102300' => 'ghi', 'Gorai.001G129400' => 'gra', 'Gorai.004G008200' => 'gra', 'Gorai.006G109800' => 'gra', 'Gorai.006G119500' => 'gra', 'Gorai.006G121300' => 'gra', 'Gorai.010G180700' => 'gra', 'GSVIVG01012716001' => 'vvi', 'GSVIVG01025118001' => 'vvi', 'GSVIVG01030439001' => 'vvi', 'GSVIVG01031397001' => 'vvi', 'HanXRQChr01g0004201' => 'han', 'HanXRQChr02g0054941' => 'han', 'HanXRQChr05g0141811' => 'han', 'HanXRQChr07g0197751' => 'han', 'HanXRQChr11g0346691' => 'han', 'HanXRQChr13g0396971' => 'han', 'HanXRQChr14g0432951' => 'han', 'HanXRQChr14g0452001' => 'han', 'HanXRQChr15g0496681' => 'han', 'HanXRQChr17g0557491' => 'han', 'HanXRQChr17g0557501' => 'han', 'Haze_06809' => 'cav', 'Haze_12852' => 'cav', 'Haze_15850' => 'cav', 'Haze_23446' => 'cav', 'Haze_23942' => 'cav', 'Haze_23943' => 'cav', 'Hma1.2p1_0091F.1_g046450' => 'hma', 'Hma1.2p1_0128F.1_g059910' => 'hma', 'Hma1.2p1_0249F.1_g102260' => 'hma', 'Hma1.2p1_0453F.1_g156190' => 'hma', 'Hma1.2p1_0695F.1_g204380' => 'hma', 'Hma1.2p1_0749F.1_g212650' => 'hma', 'Hma1.2p1_2156F.1_g315420' => 'hma', 'Hma1.2p1_2686F.1_g326940' => 'hma', 'HPP92_006428' => 'vpl', 'HPP92_012069' => 'vpl', 'HPP92_014129' => 'vpl', 'HPP92_014133' => 'vpl', 'HPP92_017315' => 'vpl', 'HPP92_026445' => 'vpl', 'HPP92_026446' => 'vpl', 'Hund00774' => 'sun', 'Hund07682' => 'sun', 'Hund21413' => 'sun', 'Hund23462' => 'sun', 'Hund23463' => 'sun', 'Lalb_Chr03g0027911' => 'lal', 'Lalb_Chr13g0304271' => 'lal', 'Lalb_Chr19g0137471' => 'lal', 'Lalb_Chr22g0350651' => 'lal', 'Lalb_Chr24g0395151' => 'lal', 'Lj1A1231T40' => 'lonja', 'Lj1A221T48' => 'lonja', 'Lj1C924T12' => 'lonja', 'Lj2C993G6' => 'lonja', 'Lj3g0005790' => 'lja', 'Lj3g0015432' => 'lja', 'Lj3g0017722' => 'lja', 'Lj3g0018497' => 'lja', 'Lj4g0025071' => 'lja', 'Lsat_1_v5_gn_1_129680' => 'lsa', 'Lsat_1_v5_gn_2_25321' => 'lsa', 'Lsat_1_v5_gn_2_95461' => 'lsa', 'Lsat_1_v5_gn_4_159620' => 'lsa', 'Lsat_1_v5_gn_6_41301' => 'lsa', 'Lsat_1_v5_gn_6_74660' => 'lsa', 'Lsat_1_v5_gn_7_11520' => 'lsa', 'Lsat_1_v5_gn_9_67680' => 'lsa', 'Manes.04G008300' => 'mes', 'Manes.04G008400' => 'mes', 'Manes.04G026500' => 'mes', 'Manes.10G135300' => 'mes', 'Manes.11G157300' => 'mes', 'Manes.12G074000' => 'mes', 'Manes.16G006200' => 'mes', 'Manes.17G026400' => 'mes', 'Mapoly0024s0086' => 'mpo', 'Mapoly0024s0087' => 'mpo', 'Mapoly0071s0057' => 'mpo', 'Mapoly0204s0012' => 'mpo', 'MBI04_g37681_MAGBIO' => 'mbi', 'MBI05_g17779_MAGBIO' => 'mbi', 'MBI12_g31184_MAGBIO' => 'mbi', 'MBI17_g11083_MAGBIO' => 'mbi', 'MBI18_g03883_MAGBIO' => 'mbi', 'MBI18_g28940_MAGBIO' => 'mbi', 'MCO01G690' => 'mco', 'MD03G1109900' => 'mdo', 'MD03G1134800' => 'mdo', 'MD05G1348000' => 'mdo', 'MD10G1322400' => 'mdo', 'MD11G1123300' => 'mdo', 'MD11G1157600' => 'mdo', 'Medtr2g084875' => 'mtr', 'Medtr2g088130' => 'mtr', 'Medtr4g055310' => 'mtr', 'Medtr4g061070' => 'mtr', 'Medtr4g132250' => 'mtr', 'MELO3C004795.2' => 'cme', 'MELO3C004797.2' => 'cme', 'MELO3C007396.2' => 'cme', 'MELO3C019277.2' => 'cme', 'MELO3C021449.2' => 'cme', 'MELO3C025736.2' => 'cme', 'Migut.D02175' => 'egut', 'Migut.H01573' => 'egut', 'Migut.M01327' => 'egut', 'Migut.N02513' => 'egut', 'MSTRG.14638' => 'ama', 'MSTRG.18632' => 'ama', 'MSTRG.7203' => 'ama', 'Nitab4.5_0000533g0140' => 'nta', 'Nitab4.5_0000888g0150' => 'nta', 'Nitab4.5_0001453g0040' => 'nta', 'Nitab4.5_0002827g0090' => 'nta', 'Nitab4.5_0003082g0040' => 'nta', 'Nitab4.5_0007799g0040' => 'nta', 'Nitab4.5_0008983g0010' => 'nta', 'Nitab4.5_0009017g0020' => 'nta', 'Nn1g02132' => 'nnu', 'Nn1g03492' => 'nnu', 'Nn1g03493' => 'nnu', 'Nn1g03494' => 'nnu', 'Nn1g07164' => 'nnu', 'Nn1g07291' => 'nnu', 'Nn2g10655' => 'nnu', 'Nn2g11652' => 'nnu', 'Nn2g14008' => 'nnu', 'Nn3g17476' => 'nnu', 'Nn3g17477' => 'nnu', 'Nn4g22370' => 'nnu', 'Nn4g25255' => 'nnu', 'Nn5g27755' => 'nnu', 'Nn6g34260' => 'nnu', 'Nn6g35041' => 'nnu', 'Oeu005924.1' => 'oeu', 'Oeu008383.1' => 'oeu', 'Oeu014928.1' => 'oeu', 'Oeu019889.1' => 'oeu', 'Oeu022271.1' => 'oeu', 'Oeu025271.1' => 'oeu', 'Oeu036302.1' => 'oeu', 'Oeu044100.1' => 'oeu', 'Os01g0528300' => 'osa', 'Os03g0286200' => 'osa', 'Os04g0406600' => 'osa', 'Os07g0512000' => 'osa', 'Os07g0694600' => 'osa', 'Os08g0411000' => 'osa', 'Os09g0565700' => 'osa', 'Os09g0566050' => 'osa', 'Os10g0523700' => 'osa', 'Peaxi162Scf00002g00514' => 'pax', 'Peaxi162Scf00047g01817' => 'pax', 'Peaxi162Scf00114g00001' => 'pax', 'Peaxi162Scf00147g00613' => 'pax', 'Peaxi162Scf00389g00425' => 'pax', 'PGR042G1139' => 'pgr', 'PGR042G3273' => 'pgr', 'PGR102G2180' => 'pgr', 'PGR119G0234' => 'pgr', 'PGR119G0668' => 'pgr', 'PGSC0003DMG400007122' => 'stu', 'PGSC0003DMG400016478' => 'stu', 'PGSC0003DMG400025374' => 'stu', 'PGSC0003DMG400026536' => 'stu', 'Phvul.003G079600' => 'pvu', 'Phvul.005G115600' => 'pvu', 'Phvul.005G127100' => 'pvu', 'Phvul.006G149500' => 'pvu', 'Phvul.006G149600' => 'pvu', 'Phvul.011G071800' => 'pvu', 'Phvul.011G090400' => 'pvu', 'Potri.004G013400' => 'ptr', 'Potri.004G188100' => 'ptr', 'Potri.008G195500' => 'ptr', 'Potri.009G148800' => 'ptr', 'Potri.011G004700' => 'ptr', 'Pp3c17_22810' => 'ppa', 'Pp3c18_4480' => 'ppa', 'Pp3c19_13030' => 'ppa', 'Pp3c1_33620' => 'ppa', 'Pp3c2_9380' => 'ppa', 'PRCOL_00001023' => 'pco', 'Prupe.3G216300' => 'ppe', 'Prupe.4G019500' => 'ppe', 'Prupe.6G092500' => 'ppe', 'Prupe.6G119200' => 'ppe', 'Psat0s1945g0080' => 'psa', 'Psat0s4167g0040' => 'psa', 'Psat1g185800' => 'psa', 'Psat4g006440' => 'psa', 'Psat4g006480' => 'psa', 'Psat4g168120' => 'psa', 'Psat5g255680' => 'psa', 'Psat5g261760' => 'psa', 'Psat7g222120' => 'psa', 'PSO063G7252' => 'pso', 'PSO170G4778' => 'pso', 'PSO210G2249' => 'pso', 'PSO339G2411' => 'pso', 'PSO339G2457' => 'pso', 'PSO339G2854' => 'pso', 'PSO339G4288' => 'pso', 'PSO339G4615' => 'pso', 'PSO384G2796' => 'pso', 'PSO384G2940' => 'pso', 'PSO384G4227' => 'pso', 'PSO478G1425' => 'pso', 'PSO541G3863' => 'pso', 'PSO675G0507' => 'pso', 'PSO782G0338' => 'pso', 'PSO832G0644' => 'pso', 'QL01p013664' => 'qlo', 'QL01p036598' => 'qlo', 'QL05p072984' => 'qlo', 'QL08p005768' => 'qlo', 'QL08p032743' => 'qlo', 'QL93p0073_0439' => 'qlo', 'QL93p0073_0444' => 'qlo', 'RcHm_v2.0_Chr5g0002851' => 'rch', 'RcHm_v2.0_Chr5g0055201' => 'rch', 'RcHm_v2.0_Chr5g0061191' => 'rch', 'RcHm_v2.0_Chr7g0203231' => 'rch', 'Rhsim01G0208100' => 'rsi', 'Rhsim01G0208200' => 'rsi', 'Rhsim02G0106500' => 'rsi', 'Rhsim03G0107900' => 'rsi', 'Rhsim06G0163400' => 'rsi', 'Rhsim13G0105200' => 'rsi', 'Sabra04G0006300' => 'sbr', 'Sabra04G0127000' => 'sbr', 'Sabra08G0148700' => 'sbr', 'Sabra09G0117400' => 'sbr', 'SalBow1G3326' => 'sbo', 'SalBow3G3228' => 'sbo', 'SalBow6G1634' => 'sbo', 'SalBow6G3603' => 'sbo', 'SalBow6G5266' => 'sbo', 'SalBow7G2265' => 'sbo', 'SalBow8G0850' => 'sbo', 'SalBow8G2592' => 'sbo', 'Sc05g0009240' => 'sci', 'Sc12g0002300' => 'sci', 'Sc21g0000100' => 'sci', 'Sc21g0004720' => 'sci', 'Sed0002949' => 'sed', 'Sed0004114' => 'sed', 'Sed0004306' => 'sed', 'Sed0006172' => 'sed', 'Sed0008413' => 'sed', 'Sed0013809' => 'sed', 'Sed0019556' => 'sed', 'SEGI_03570' => 'sgi', 'SEGI_07859' => 'sgi', 'SEGI_15042' => 'sgi', 'SEGI_16263' => 'sgi', 'SEGI_16552' => 'sgi', 'SEGI_24331' => 'sgi', 'SEGI_27316' => 'sgi', 'SEGI_29521' => 'sgi', 'SEGI_41342' => 'sgi', 'SGA_v2.0_scaffold27G11617' => 'sas', 'SGA_v2.0_scaffold316G48428' => 'sas', 'SGA_v2.0_scaffold49G18261' => 'sas', 'SGA_v2.0_scaffold7G03831' => 'sas', 'SGA_v2.0_scaffold93G28359' => 'sas', 'SHI02210' => 'shi', 'SHI06028' => 'shi', 'SHI06321' => 'shi', 'SMO111G0012' => 'smo', 'SMO228G0080' => 'smo', 'SMO356G0756' => 'smo', 'Solyc02g080620.3' => 'sly', 'Solyc06g074530.1' => 'sly', 'Solyc11g066890.1' => 'sly', 'Solyc11g072520.3' => 'sly', 'Sopen02g025330' => 'spe', 'Sopen06g031000' => 'spe', 'Sopen09g008240' => 'spe', 'Sopen09g025210' => 'spe', 'Sopen11g026600' => 'spe', 'Sopen11g030170' => 'spe', 'Sp1g10420' => 'spa', 'Sp3g06570' => 'spa', 'Sp4g10660' => 'spa', 'Sp5g16460' => 'spa', 'Sp6g22710' => 'spa', 'TAR365G0112' => 'tar', 'TAR369G0717' => 'tar', 'TAR374G0976' => 'tar', 'TAR623G1128' => 'tar', 'TAR626G1937' => 'tar', 'TAR627G0123' => 'tar', 'TAR628G0305' => 'tar', 'TAR636G1176' => 'tar', 'TAR636G2442' => 'tar', 'THA.LOC104800556' => 'tha', 'THA.LOC104809501' => 'tha', 'THA.LOC104815126' => 'tha', 'THA.LOC104815732' => 'tha', 'THA.LOC104823528' => 'tha', 'Thecc.02G365600' => 'tca', 'Thecc.06G222300' => 'tca', 'Thecc.09G261800' => 'tca', 'Thecc.09G291400' => 'tca', 'Thhalv10003028m.g' => 'esa', 'Thhalv10007886m.g' => 'esa', 'Thhalv10016085m.g' => 'esa', 'Thhalv10016681m.g' => 'esa', 'Thhalv10020951m.g' => 'esa', 'TPR.G15598' => 'tpr', 'TPR.G29305' => 'tpr', 'TPR.G32395' => 'tpr', 'TPR.G36998' => 'tpr', 'TPR.G4227' => 'tpr', 'TWI18G1433' => 'twi', 'TWI31G0755' => 'twi', 'TWI38G0912' => 'twi', 'TWI75G1097' => 'twi', 'TWI75G1619' => 'twi', 'TWI79G1336' => 'twi', 'unitig_0.g943' => 'ugi', 'unitig_0.g944' => 'ugi', 'unitig_22.g6646' => 'ugi', 'unitig_37.g12681' => 'ugi', 'unitig_8.g3290' => 'ugi', 'vmacro03278' => 'vma', 'vmacro12197' => 'vma', 'vmacro14478' => 'vma', 'vmacro15787' => 'vma', 'vmacro15789' => 'vma', 'vmacro15790' => 'vma', 'vmacro15806' => 'vma', 'vmacro22907' => 'vma', 'vmacro22908' => 'vma', 'vmacro22909' => 'vma', 'vmacro23108' => 'vma', 'VMungo0540G0540' => 'vmu', 'VMungo0540G2468' => 'vmu', 'VMungo1080G0390' => 'vmu', 'VMungo1080G1165' => 'vmu', 'VMungo1127G0170' => 'vmu', 'VMungo1127G2099' => 'vmu', 'VMungo1215G3013' => 'vmu', 'Zm00001eb013110' => 'zma', 'Zm00001eb084260' => 'zma', 'Zm00001eb096110' => 'zma', 'Zm00001eb217510' => 'zma', 'Zm00001eb322550' => 'zma', 'Zm00001eb390770' => 'zma', 'Zm00001eb397170' => 'zma', 'Zm00001eb404610' => 'zma', 'Zm00001eb421790' => 'zma' ) $gf_id = 'HOM05D000911' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000911' ) $data_identifier = 'HOM05D000911' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 16, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 5, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 6, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 8, 'nnu' => (int) 16, 'oeu' => (int) 8, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 5, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 16, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421790' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000911', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27780' => 'bna', 'A03p35380' => 'bna', 'A04p21160' => 'bna', 'A05p40570' => 'bna', 'A06p26900' => 'bna', 'A08p33230' => 'bna', 'A09p65960' => 'bna', 'A10p18290' => 'bna', 'Aa31LG1G12990' => 'aar', 'Aa31LG1G2980' => 'aar', 'Aa31LG4G14320' => 'aar', 'Aa31LG7G11800' => 'aar', 'Aa31sc36G50' => 'aar', 'Aa31sc36G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3721' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5459' => 'aag', 'Actinidia03028' => 'ach', 'Actinidia03753' => 'ach', 'Actinidia04187' => 'ach', 'Actinidia05509' => 'ach', 'Actinidia24180' => 'ach', 'Actinidia26906' => 'ach', 'Actinidia37097' => 'ach', 'Actinidia38249' => 'ach', 'Ah.01g003470' => 'amhyb', 'Ah.01g004580' => 'amhyb', 'Ah.01g014850' => 'amhyb', 'Ah.01g016830' => 'amhyb', 'Ah.14g088000' => 'amhyb', 'AL1G22980' => 'aly', 'AL3G18990' => 'aly', 'AL4G22440' => 'aly', 'AL4G33180' => 'aly', 'AL5G22920' => 'aly', 'AL6G33660' => 'aly', 'AL8G20720' => 'aly', 'Aqoxy1G00935' => 'aox', 'Aqoxy1G02094' => 'aox', 'Aqoxy2G01239' => 'aox', 'Aqoxy4G01870' => 'aox', 'Aqoxy7G00450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.36ZVTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71EM27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5D6C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH3WRE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3NCM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RIM768' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YB5YRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z36GDV' => 'arhy', 'AT1G08250' => 'ath', 'AT1G11790' => 'ath', 'AT2G27820' => 'ath', 'AT3G07630' => 'ath', 'AT3G44720' => 'ath', 'AT5G22630' => 'ath', 'ATR0693G304' => 'atr', 'ATR0794G109' => 'atr', 'ATR0820G120' => 'atr', 'ATR1159G064' => 'atr', 'Atru.chr10.2239' => 'acertr', 'Atru.chr3.3371' => 'acertr', 'Atru.chr6.3202' => 'acertr', 'AUR62006499' => 'cqu', 'AUR62012718' => 'cqu', 'AUR62021938' => 'cqu', 'AUR62023932' => 'cqu', 'AUR62025034' => 'cqu', 'AUR62025035' => 'cqu', 'AUR62038307' => 'cqu', 'AUR62043466' => 'cqu', 'BcaB02g10748' => 'bca', 'BcaB03g13231' => 'bca', 'BcaB03g14689' => 'bca', 'BcaB05g22716' => 'bca', 'BcaB06g28172' => 'bca', 'BcaB08g36413' => 'bca', 'BcaC01g02186' => 'bca', 'BcaC01g04272' => 'bca', 'BcaC02g08080' => 'bca', 'BcaC02g08227' => 'bca', 'BcaC03g13901' => 'bca', 'BcaC04g19593' => 'bca', 'BcaC04g20874' => 'bca', 'BcaC05g29557' => 'bca', 'BcaC06g35505' => 'bca', 'BcaC07g41954' => 'bca', 'BcaC07g41955' => 'bca', 'BcaC07g41956' => 'bca', 'BcaC07g42519' => 'bca', 'BcaC07g42520' => 'bca', 'BcaC07g42523' => 'bca', 'BcaC07g42524' => 'bca', 'BcaC07g42525' => 'bca', 'BcaC08g47480' => 'bca', 'BcaC08g47481' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00530' => 'bna', 'BolC2t07178H' => 'bol', 'BolC3t16567H' => 'bol', 'BolC4t27234H' => 'bol', 'BolC5t29728H' => 'bol', 'BolC5t34622H' => 'bol', 'BolC6t40321H' => 'bol', 'BolC7t42028H' => 'bol', 'BolC8t49125H' => 'bol', 'BolC8t52538H' => 'bol', 'BolC8t52539H' => 'bol', 'BolC9t56681H' => 'bol', 'BolC9t58266H' => 'bol', 'BolSC21t60294H' => 'bol', 'BraA02t05670Z' => 'bra', 'BraA03t12716Z' => 'bra', 'BraA04t17685Z' => 'bra', 'BraA05t22788Z' => 'bra', 'BraA06t24032Z' => 'bra', 'BraA06t25625Z' => 'bra', 'BraA07t27930Z' => 'bra', 'BraA08t35242Z' => 'bra', 'BraA09t38609Z' => 'bra', 'BraA10t43905Z' => 'bra', 'C02p11060' => 'bna', 'C03p42990' => 'bna', 'C03p67310' => 'bna', 'C04p56990' => 'bna', 'C04p58660' => 'bna', 'C05p09890' => 'bna', 'C05p59680' => 'bna', 'C06p19830' => 'bna', 'C06p53040' => 'bna', 'C07p15230' => 'bna', 'C08p50070' => 'bna', 'C08p50090' => 'bna', 'C09p38330' => 'bna', 'C09p53940' => 'bna', 'CAN.G1014.1' => 'can', 'CAN.G644.30' => 'can', 'CAN.G84.47' => 'can', 'CAN.G919.8' => 'can', 'CANSAT54G0113' => 'cansat', 'CANSAT54G1286' => 'cansat', 'CANSAT64G1020' => 'cansat', 'CARHR008080' => 'chi', 'CARHR008090' => 'chi', 'CARHR012130' => 'chi', 'CARHR038390' => 'chi', 'CARHR082330' => 'chi', 'CARHR120520' => 'chi', 'CARHR151470' => 'chi', 'CARHR190950' => 'chi', 'Carub.0001s0760' => 'cru', 'Carub.0001s1146' => 'cru', 'Carub.0003s0721' => 'cru', 'Carub.0004s0858' => 'cru', 'Carub.0005s1040' => 'cru', 'Carub.0006s2035' => 'cru', 'Carub.0015s0005' => 'cru', 'Ca_01607_v3' => 'car', 'Ca_01677_v3' => 'car', 'Ca_06087_v3' => 'car', 'Ca_19238_v3' => 'car', 'Ca_19373_v3' => 'car', 'Ca_21079_v3' => 'car', 'CBR_g54016' => 'cbr', 'CBR_g54018' => 'cbr', 'CBR_g54020' => 'cbr', 'Cc01_g09780' => 'ccan', 'Cc01_g11680' => 'ccan', 'Cc02_g15610' => 'ccan', 'Cc05_g04350' => 'ccan', 'Cc09_g01580' => 'ccan', 'CDE01G0795' => 'cde', 'CDE02G2024' => 'cde', 'CDE02G2260' => 'cde', 'CDE02G4561' => 'cde', 'CDE05G2733' => 'cde', 'CDE05G3422' => 'cde', 'CDE06G2003' => 'cde', 'CDE08G0576' => 'cde', 'CDE09G0048' => 'cde', 'CDE11G0805' => 'cde', 'Cfa003644' => 'cfa', 'Cfa006290' => 'cfa', 'Cfa010080' => 'cfa', 'Cfa011376' => 'cfa', 'Cfa011576' => 'cfa', 'Cfa011577' => 'cfa', 'Cfa014389' => 'cfa', 'Ciclev10006044m.g' => 'ccl', 'Ciclev10006954m.g' => 'ccl', 'Ciclev10015131m.g' => 'ccl', 'Ciclev10015580m.g' => 'ccl', 'Ciclev10028359m.g' => 'ccl', 'Ciclev10028573m.g' => 'ccl', 'CiPaw.03G159300' => 'cil', 'CiPaw.04G115100' => 'cil', 'CiPaw.09G092800' => 'cil', 'CiPaw.10G071800' => 'cil', 'CiPaw.13G105800' => 'cil', 'CiPaw.13G141000' => 'cil', 'CiPaw.14G103400' => 'cil', 'ClCG01G012700' => 'cla', 'ClCG01G012720' => 'cla', 'ClCG01G021920' => 'cla', 'ClCG02G008870' => 'cla', 'ClCG02G020840' => 'cla', 'ClCG02G021930' => 'cla', 'COL.COLO4_19302' => 'col', 'COL.COLO4_25262' => 'col', 'COL.COLO4_31788' => 'col', 'Cpa.g.c34684' => 'cpa', 'Cpa.g.c36520.1' => 'cpa', 'Cpa.g.c45626' => 'cpa', 'Cpa.g.sc121.17' => 'cpa', 'Cpa.g.sc13.22' => 'cpa', 'Cpa.g.sc87.88' => 'cpa', 'Cre06.g261800' => 'cre', 'CsaV3_1G014500' => 'csa', 'CsaV3_1G014510' => 'csa', 'CsaV3_2G034880' => 'csa', 'CsaV3_6G014760' => 'csa', 'CsaV3_6G021500' => 'csa', 'CsaV3_6G048980' => 'csa', 'CSS0002511' => 'camsi', 'CSS0007556' => 'camsi', 'CSS0008532' => 'camsi', 'CSS0009709' => 'camsi', 'CSS0010486' => 'camsi', 'CSS0016768' => 'camsi', 'CSS0023512' => 'camsi', 'CSS0025341' => 'camsi', 'CSS0027999' => 'camsi', 'CSS0028944' => 'camsi', 'CSS0032292' => 'camsi', 'CSS0032464' => 'camsi', 'CSS0037153' => 'camsi', 'CSS0039256' => 'camsi', 'CSS0048392' => 'camsi', 'CSS0050458' => 'camsi', 'DCAR_004224' => 'dca', 'DCAR_006147' => 'dca', 'DCAR_006465' => 'dca', 'DCAR_008159' => 'dca', 'DCAR_012164' => 'dca', 'DCAR_019764' => 'dca', 'Dinv05418' => 'din', 'Dinv10839' => 'din', 'Dinv12521' => 'din', 'Dinv13900' => 'din', 'Dinv29426' => 'din', 'Duzib150G0263' => 'dzi', 'Duzib168G1178' => 'dzi', 'Duzib168G1924' => 'dzi', 'Duzib170G0299' => 'dzi', 'Duzib170G0813' => 'dzi', 'Duzib235G1128' => 'dzi', 'Duzib248G1060' => 'dzi', 'ECA232G1910' => 'eca', 'ECA233G4621' => 'eca', 'ECA238G1216' => 'eca', 'ECA238G1784' => 'eca', 'ECA248G1242' => 'eca', 'EL10Ac8g20071' => 'bvu', 'EL10Ac9g21086' => 'bvu', 'EL10Ac9g22407' => 'bvu', 'EL10Ac9g22412' => 'bvu', 'Eucgr.A01119' => 'egr', 'Eucgr.E04043' => 'egr', 'Eucgr.J00428' => 'egr', 'Eucgr.J00958' => 'egr', 'FAN11G3091' => 'fan', 'FAN11G3651' => 'fan', 'FAN16G2566' => 'fan', 'FAN21G3155' => 'fan', 'FAN21G3400' => 'fan', 'FAN21G3543' => 'fan', 'FAN25G0234' => 'fan', 'FAN25G1422' => 'fan', 'FAN25G3392' => 'fan', 'FvH4_3g01940' => 'fve', 'FvH4_3g29870' => 'fve', 'FvH4_3g33680' => 'fve', 'Glyma.09G004200' => 'gma', 'Glyma.11G151288' => 'gma', 'Glyma.11G189100' => 'gma', 'Glyma.12G072500' => 'gma', 'Glyma.12G085500' => 'gma', 'Glyma.12G181800' => 'gma', 'Glyma.12G193000' => 'gma', 'Glyma.13G309300' => 'gma', 'Glyma.13G319000' => 'gma', 'Glyma.17G012600' => 'gma', 'Gohir.A06G148600' => 'ghi', 'Gohir.A07G115800' => 'ghi', 'Gohir.A08G003600' => 'ghi', 'Gohir.A09G093300' => 'ghi', 'Gohir.A09G105400' => 'ghi', 'Gohir.A09G105500' => 'ghi', 'Gohir.D06G154600' => 'ghi', 'Gohir.D07G120200' => 'ghi', 'Gohir.D08G013900' => 'ghi', 'Gohir.D09G093100' => 'ghi', 'Gohir.D09G102200' => 'ghi', 'Gohir.D09G102300' => 'ghi', 'Gorai.001G129400' => 'gra', 'Gorai.004G008200' => 'gra', 'Gorai.006G109800' => 'gra', 'Gorai.006G119500' => 'gra', 'Gorai.006G121300' => 'gra', 'Gorai.010G180700' => 'gra', 'GSVIVG01012716001' => 'vvi', 'GSVIVG01025118001' => 'vvi', 'GSVIVG01030439001' => 'vvi', 'GSVIVG01031397001' => 'vvi', 'HanXRQChr01g0004201' => 'han', 'HanXRQChr02g0054941' => 'han', 'HanXRQChr05g0141811' => 'han', 'HanXRQChr07g0197751' => 'han', 'HanXRQChr11g0346691' => 'han', 'HanXRQChr13g0396971' => 'han', 'HanXRQChr14g0432951' => 'han', 'HanXRQChr14g0452001' => 'han', 'HanXRQChr15g0496681' => 'han', 'HanXRQChr17g0557491' => 'han', 'HanXRQChr17g0557501' => 'han', 'Haze_06809' => 'cav', 'Haze_12852' => 'cav', 'Haze_15850' => 'cav', 'Haze_23446' => 'cav', 'Haze_23942' => 'cav', 'Haze_23943' => 'cav', 'Hma1.2p1_0091F.1_g046450' => 'hma', 'Hma1.2p1_0128F.1_g059910' => 'hma', 'Hma1.2p1_0249F.1_g102260' => 'hma', 'Hma1.2p1_0453F.1_g156190' => 'hma', 'Hma1.2p1_0695F.1_g204380' => 'hma', 'Hma1.2p1_0749F.1_g212650' => 'hma', 'Hma1.2p1_2156F.1_g315420' => 'hma', 'Hma1.2p1_2686F.1_g326940' => 'hma', 'HPP92_006428' => 'vpl', 'HPP92_012069' => 'vpl', 'HPP92_014129' => 'vpl', 'HPP92_014133' => 'vpl', 'HPP92_017315' => 'vpl', 'HPP92_026445' => 'vpl', 'HPP92_026446' => 'vpl', 'Hund00774' => 'sun', 'Hund07682' => 'sun', 'Hund21413' => 'sun', 'Hund23462' => 'sun', 'Hund23463' => 'sun', 'Lalb_Chr03g0027911' => 'lal', 'Lalb_Chr13g0304271' => 'lal', 'Lalb_Chr19g0137471' => 'lal', 'Lalb_Chr22g0350651' => 'lal', 'Lalb_Chr24g0395151' => 'lal', 'Lj1A1231T40' => 'lonja', 'Lj1A221T48' => 'lonja', 'Lj1C924T12' => 'lonja', 'Lj2C993G6' => 'lonja', 'Lj3g0005790' => 'lja', 'Lj3g0015432' => 'lja', 'Lj3g0017722' => 'lja', 'Lj3g0018497' => 'lja', 'Lj4g0025071' => 'lja', 'Lsat_1_v5_gn_1_129680' => 'lsa', 'Lsat_1_v5_gn_2_25321' => 'lsa', 'Lsat_1_v5_gn_2_95461' => 'lsa', 'Lsat_1_v5_gn_4_159620' => 'lsa', 'Lsat_1_v5_gn_6_41301' => 'lsa', 'Lsat_1_v5_gn_6_74660' => 'lsa', 'Lsat_1_v5_gn_7_11520' => 'lsa', 'Lsat_1_v5_gn_9_67680' => 'lsa', 'Manes.04G008300' => 'mes', 'Manes.04G008400' => 'mes', 'Manes.04G026500' => 'mes', 'Manes.10G135300' => 'mes', 'Manes.11G157300' => 'mes', 'Manes.12G074000' => 'mes', 'Manes.16G006200' => 'mes', 'Manes.17G026400' => 'mes', 'Mapoly0024s0086' => 'mpo', 'Mapoly0024s0087' => 'mpo', 'Mapoly0071s0057' => 'mpo', 'Mapoly0204s0012' => 'mpo', 'MBI04_g37681_MAGBIO' => 'mbi', 'MBI05_g17779_MAGBIO' => 'mbi', 'MBI12_g31184_MAGBIO' => 'mbi', 'MBI17_g11083_MAGBIO' => 'mbi', 'MBI18_g03883_MAGBIO' => 'mbi', 'MBI18_g28940_MAGBIO' => 'mbi', 'MCO01G690' => 'mco', 'MD03G1109900' => 'mdo', 'MD03G1134800' => 'mdo', 'MD05G1348000' => 'mdo', 'MD10G1322400' => 'mdo', 'MD11G1123300' => 'mdo', 'MD11G1157600' => 'mdo', 'Medtr2g084875' => 'mtr', 'Medtr2g088130' => 'mtr', 'Medtr4g055310' => 'mtr', 'Medtr4g061070' => 'mtr', 'Medtr4g132250' => 'mtr', 'MELO3C004795.2' => 'cme', 'MELO3C004797.2' => 'cme', 'MELO3C007396.2' => 'cme', 'MELO3C019277.2' => 'cme', 'MELO3C021449.2' => 'cme', 'MELO3C025736.2' => 'cme', 'Migut.D02175' => 'egut', 'Migut.H01573' => 'egut', 'Migut.M01327' => 'egut', 'Migut.N02513' => 'egut', 'MSTRG.14638' => 'ama', 'MSTRG.18632' => 'ama', 'MSTRG.7203' => 'ama', 'Nitab4.5_0000533g0140' => 'nta', 'Nitab4.5_0000888g0150' => 'nta', 'Nitab4.5_0001453g0040' => 'nta', 'Nitab4.5_0002827g0090' => 'nta', 'Nitab4.5_0003082g0040' => 'nta', 'Nitab4.5_0007799g0040' => 'nta', 'Nitab4.5_0008983g0010' => 'nta', 'Nitab4.5_0009017g0020' => 'nta', 'Nn1g02132' => 'nnu', 'Nn1g03492' => 'nnu', 'Nn1g03493' => 'nnu', 'Nn1g03494' => 'nnu', 'Nn1g07164' => 'nnu', 'Nn1g07291' => 'nnu', 'Nn2g10655' => 'nnu', 'Nn2g11652' => 'nnu', 'Nn2g14008' => 'nnu', 'Nn3g17476' => 'nnu', 'Nn3g17477' => 'nnu', 'Nn4g22370' => 'nnu', 'Nn4g25255' => 'nnu', 'Nn5g27755' => 'nnu', 'Nn6g34260' => 'nnu', 'Nn6g35041' => 'nnu', 'Oeu005924.1' => 'oeu', 'Oeu008383.1' => 'oeu', 'Oeu014928.1' => 'oeu', 'Oeu019889.1' => 'oeu', 'Oeu022271.1' => 'oeu', 'Oeu025271.1' => 'oeu', 'Oeu036302.1' => 'oeu', 'Oeu044100.1' => 'oeu', 'Os01g0528300' => 'osa', 'Os03g0286200' => 'osa', 'Os04g0406600' => 'osa', 'Os07g0512000' => 'osa', 'Os07g0694600' => 'osa', 'Os08g0411000' => 'osa', 'Os09g0565700' => 'osa', 'Os09g0566050' => 'osa', 'Os10g0523700' => 'osa', 'Peaxi162Scf00002g00514' => 'pax', 'Peaxi162Scf00047g01817' => 'pax', 'Peaxi162Scf00114g00001' => 'pax', 'Peaxi162Scf00147g00613' => 'pax', 'Peaxi162Scf00389g00425' => 'pax', 'PGR042G1139' => 'pgr', 'PGR042G3273' => 'pgr', 'PGR102G2180' => 'pgr', 'PGR119G0234' => 'pgr', 'PGR119G0668' => 'pgr', 'PGSC0003DMG400007122' => 'stu', 'PGSC0003DMG400016478' => 'stu', 'PGSC0003DMG400025374' => 'stu', 'PGSC0003DMG400026536' => 'stu', 'Phvul.003G079600' => 'pvu', 'Phvul.005G115600' => 'pvu', 'Phvul.005G127100' => 'pvu', 'Phvul.006G149500' => 'pvu', 'Phvul.006G149600' => 'pvu', 'Phvul.011G071800' => 'pvu', 'Phvul.011G090400' => 'pvu', 'Potri.004G013400' => 'ptr', 'Potri.004G188100' => 'ptr', 'Potri.008G195500' => 'ptr', 'Potri.009G148800' => 'ptr', 'Potri.011G004700' => 'ptr', 'Pp3c17_22810' => 'ppa', 'Pp3c18_4480' => 'ppa', 'Pp3c19_13030' => 'ppa', 'Pp3c1_33620' => 'ppa', 'Pp3c2_9380' => 'ppa', 'PRCOL_00001023' => 'pco', 'Prupe.3G216300' => 'ppe', 'Prupe.4G019500' => 'ppe', 'Prupe.6G092500' => 'ppe', 'Prupe.6G119200' => 'ppe', 'Psat0s1945g0080' => 'psa', 'Psat0s4167g0040' => 'psa', 'Psat1g185800' => 'psa', 'Psat4g006440' => 'psa', 'Psat4g006480' => 'psa', 'Psat4g168120' => 'psa', 'Psat5g255680' => 'psa', 'Psat5g261760' => 'psa', 'Psat7g222120' => 'psa', 'PSO063G7252' => 'pso', 'PSO170G4778' => 'pso', 'PSO210G2249' => 'pso', 'PSO339G2411' => 'pso', 'PSO339G2457' => 'pso', 'PSO339G2854' => 'pso', 'PSO339G4288' => 'pso', 'PSO339G4615' => 'pso', 'PSO384G2796' => 'pso', 'PSO384G2940' => 'pso', 'PSO384G4227' => 'pso', 'PSO478G1425' => 'pso', 'PSO541G3863' => 'pso', 'PSO675G0507' => 'pso', 'PSO782G0338' => 'pso', 'PSO832G0644' => 'pso', 'QL01p013664' => 'qlo', 'QL01p036598' => 'qlo', 'QL05p072984' => 'qlo', 'QL08p005768' => 'qlo', 'QL08p032743' => 'qlo', 'QL93p0073_0439' => 'qlo', 'QL93p0073_0444' => 'qlo', 'RcHm_v2.0_Chr5g0002851' => 'rch', 'RcHm_v2.0_Chr5g0055201' => 'rch', 'RcHm_v2.0_Chr5g0061191' => 'rch', 'RcHm_v2.0_Chr7g0203231' => 'rch', 'Rhsim01G0208100' => 'rsi', 'Rhsim01G0208200' => 'rsi', 'Rhsim02G0106500' => 'rsi', 'Rhsim03G0107900' => 'rsi', 'Rhsim06G0163400' => 'rsi', 'Rhsim13G0105200' => 'rsi', 'Sabra04G0006300' => 'sbr', 'Sabra04G0127000' => 'sbr', 'Sabra08G0148700' => 'sbr', 'Sabra09G0117400' => 'sbr', 'SalBow1G3326' => 'sbo', 'SalBow3G3228' => 'sbo', 'SalBow6G1634' => 'sbo', 'SalBow6G3603' => 'sbo', 'SalBow6G5266' => 'sbo', 'SalBow7G2265' => 'sbo', 'SalBow8G0850' => 'sbo', 'SalBow8G2592' => 'sbo', 'Sc05g0009240' => 'sci', 'Sc12g0002300' => 'sci', 'Sc21g0000100' => 'sci', 'Sc21g0004720' => 'sci', 'Sed0002949' => 'sed', 'Sed0004114' => 'sed', 'Sed0004306' => 'sed', 'Sed0006172' => 'sed', 'Sed0008413' => 'sed', 'Sed0013809' => 'sed', 'Sed0019556' => 'sed', 'SEGI_03570' => 'sgi', 'SEGI_07859' => 'sgi', 'SEGI_15042' => 'sgi', 'SEGI_16263' => 'sgi', 'SEGI_16552' => 'sgi', 'SEGI_24331' => 'sgi', 'SEGI_27316' => 'sgi', 'SEGI_29521' => 'sgi', 'SEGI_41342' => 'sgi', 'SGA_v2.0_scaffold27G11617' => 'sas', 'SGA_v2.0_scaffold316G48428' => 'sas', 'SGA_v2.0_scaffold49G18261' => 'sas', 'SGA_v2.0_scaffold7G03831' => 'sas', 'SGA_v2.0_scaffold93G28359' => 'sas', 'SHI02210' => 'shi', 'SHI06028' => 'shi', 'SHI06321' => 'shi', 'SMO111G0012' => 'smo', 'SMO228G0080' => 'smo', 'SMO356G0756' => 'smo', 'Solyc02g080620.3' => 'sly', 'Solyc06g074530.1' => 'sly', 'Solyc11g066890.1' => 'sly', 'Solyc11g072520.3' => 'sly', 'Sopen02g025330' => 'spe', 'Sopen06g031000' => 'spe', 'Sopen09g008240' => 'spe', 'Sopen09g025210' => 'spe', 'Sopen11g026600' => 'spe', 'Sopen11g030170' => 'spe', 'Sp1g10420' => 'spa', 'Sp3g06570' => 'spa', 'Sp4g10660' => 'spa', 'Sp5g16460' => 'spa', 'Sp6g22710' => 'spa', 'TAR365G0112' => 'tar', 'TAR369G0717' => 'tar', 'TAR374G0976' => 'tar', 'TAR623G1128' => 'tar', 'TAR626G1937' => 'tar', 'TAR627G0123' => 'tar', 'TAR628G0305' => 'tar', 'TAR636G1176' => 'tar', 'TAR636G2442' => 'tar', 'THA.LOC104800556' => 'tha', 'THA.LOC104809501' => 'tha', 'THA.LOC104815126' => 'tha', 'THA.LOC104815732' => 'tha', 'THA.LOC104823528' => 'tha', 'Thecc.02G365600' => 'tca', 'Thecc.06G222300' => 'tca', 'Thecc.09G261800' => 'tca', 'Thecc.09G291400' => 'tca', 'Thhalv10003028m.g' => 'esa', 'Thhalv10007886m.g' => 'esa', 'Thhalv10016085m.g' => 'esa', 'Thhalv10016681m.g' => 'esa', 'Thhalv10020951m.g' => 'esa', 'TPR.G15598' => 'tpr', 'TPR.G29305' => 'tpr', 'TPR.G32395' => 'tpr', 'TPR.G36998' => 'tpr', 'TPR.G4227' => 'tpr', 'TWI18G1433' => 'twi', 'TWI31G0755' => 'twi', 'TWI38G0912' => 'twi', 'TWI75G1097' => 'twi', 'TWI75G1619' => 'twi', 'TWI79G1336' => 'twi', 'unitig_0.g943' => 'ugi', 'unitig_0.g944' => 'ugi', 'unitig_22.g6646' => 'ugi', 'unitig_37.g12681' => 'ugi', 'unitig_8.g3290' => 'ugi', 'vmacro03278' => 'vma', 'vmacro12197' => 'vma', 'vmacro14478' => 'vma', 'vmacro15787' => 'vma', 'vmacro15789' => 'vma', 'vmacro15790' => 'vma', 'vmacro15806' => 'vma', 'vmacro22907' => 'vma', 'vmacro22908' => 'vma', 'vmacro22909' => 'vma', 'vmacro23108' => 'vma', 'VMungo0540G0540' => 'vmu', 'VMungo0540G2468' => 'vmu', 'VMungo1080G0390' => 'vmu', 'VMungo1080G1165' => 'vmu', 'VMungo1127G0170' => 'vmu', 'VMungo1127G2099' => 'vmu', 'VMungo1215G3013' => 'vmu', 'Zm00001eb013110' => 'zma', 'Zm00001eb084260' => 'zma', 'Zm00001eb096110' => 'zma', 'Zm00001eb217510' => 'zma', 'Zm00001eb322550' => 'zma', 'Zm00001eb390770' => 'zma', 'Zm00001eb397170' => 'zma', 'Zm00001eb404610' => 'zma', 'Zm00001eb421790' => 'zma' ), 'gf_id' => 'HOM05D000911', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000911' ), 'data_identifier' => 'HOM05D000911', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000911', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27780' => 'bna', 'A03p35380' => 'bna', 'A04p21160' => 'bna', 'A05p40570' => 'bna', 'A06p26900' => 'bna', 'A08p33230' => 'bna', 'A09p65960' => 'bna', 'A10p18290' => 'bna', 'Aa31LG1G12990' => 'aar', 'Aa31LG1G2980' => 'aar', 'Aa31LG4G14320' => 'aar', 'Aa31LG7G11800' => 'aar', 'Aa31sc36G50' => 'aar', 'Aa31sc36G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3721' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5459' => 'aag', 'Actinidia03028' => 'ach', 'Actinidia03753' => 'ach', 'Actinidia04187' => 'ach', 'Actinidia05509' => 'ach', 'Actinidia24180' => 'ach', 'Actinidia26906' => 'ach', 'Actinidia37097' => 'ach', 'Actinidia38249' => 'ach', 'Ah.01g003470' => 'amhyb', 'Ah.01g004580' => 'amhyb', 'Ah.01g014850' => 'amhyb', 'Ah.01g016830' => 'amhyb', 'Ah.14g088000' => 'amhyb', 'AL1G22980' => 'aly', 'AL3G18990' => 'aly', 'AL4G22440' => 'aly', 'AL4G33180' => 'aly', 'AL5G22920' => 'aly', 'AL6G33660' => 'aly', 'AL8G20720' => 'aly', 'Aqoxy1G00935' => 'aox', 'Aqoxy1G02094' => 'aox', 'Aqoxy2G01239' => 'aox', 'Aqoxy4G01870' => 'aox', 'Aqoxy7G00450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.36ZVTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71EM27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5D6C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH3WRE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3NCM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RIM768' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YB5YRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z36GDV' => 'arhy', 'AT1G08250' => 'ath', 'AT1G11790' => 'ath', 'AT2G27820' => 'ath', 'AT3G07630' => 'ath', 'AT3G44720' => 'ath', 'AT5G22630' => 'ath', 'ATR0693G304' => 'atr', 'ATR0794G109' => 'atr', 'ATR0820G120' => 'atr', 'ATR1159G064' => 'atr', 'Atru.chr10.2239' => 'acertr', 'Atru.chr3.3371' => 'acertr', 'Atru.chr6.3202' => 'acertr', 'AUR62006499' => 'cqu', 'AUR62012718' => 'cqu', 'AUR62021938' => 'cqu', 'AUR62023932' => 'cqu', 'AUR62025034' => 'cqu', 'AUR62025035' => 'cqu', 'AUR62038307' => 'cqu', 'AUR62043466' => 'cqu', 'BcaB02g10748' => 'bca', 'BcaB03g13231' => 'bca', 'BcaB03g14689' => 'bca', 'BcaB05g22716' => 'bca', 'BcaB06g28172' => 'bca', 'BcaB08g36413' => 'bca', 'BcaC01g02186' => 'bca', 'BcaC01g04272' => 'bca', 'BcaC02g08080' => 'bca', 'BcaC02g08227' => 'bca', 'BcaC03g13901' => 'bca', 'BcaC04g19593' => 'bca', 'BcaC04g20874' => 'bca', 'BcaC05g29557' => 'bca', 'BcaC06g35505' => 'bca', 'BcaC07g41954' => 'bca', 'BcaC07g41955' => 'bca', 'BcaC07g41956' => 'bca', 'BcaC07g42519' => 'bca', 'BcaC07g42520' => 'bca', 'BcaC07g42523' => 'bca', 'BcaC07g42524' => 'bca', 'BcaC07g42525' => 'bca', 'BcaC08g47480' => 'bca', 'BcaC08g47481' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00530' => 'bna', 'BolC2t07178H' => 'bol', 'BolC3t16567H' => 'bol', 'BolC4t27234H' => 'bol', 'BolC5t29728H' => 'bol', 'BolC5t34622H' => 'bol', 'BolC6t40321H' => 'bol', 'BolC7t42028H' => 'bol', 'BolC8t49125H' => 'bol', 'BolC8t52538H' => 'bol', 'BolC8t52539H' => 'bol', 'BolC9t56681H' => 'bol', 'BolC9t58266H' => 'bol', 'BolSC21t60294H' => 'bol', 'BraA02t05670Z' => 'bra', 'BraA03t12716Z' => 'bra', 'BraA04t17685Z' => 'bra', 'BraA05t22788Z' => 'bra', 'BraA06t24032Z' => 'bra', 'BraA06t25625Z' => 'bra', 'BraA07t27930Z' => 'bra', 'BraA08t35242Z' => 'bra', 'BraA09t38609Z' => 'bra', 'BraA10t43905Z' => 'bra', 'C02p11060' => 'bna', 'C03p42990' => 'bna', 'C03p67310' => 'bna', 'C04p56990' => 'bna', 'C04p58660' => 'bna', 'C05p09890' => 'bna', 'C05p59680' => 'bna', 'C06p19830' => 'bna', 'C06p53040' => 'bna', 'C07p15230' => 'bna', 'C08p50070' => 'bna', 'C08p50090' => 'bna', 'C09p38330' => 'bna', 'C09p53940' => 'bna', 'CAN.G1014.1' => 'can', 'CAN.G644.30' => 'can', 'CAN.G84.47' => 'can', 'CAN.G919.8' => 'can', 'CANSAT54G0113' => 'cansat', 'CANSAT54G1286' => 'cansat', 'CANSAT64G1020' => 'cansat', 'CARHR008080' => 'chi', 'CARHR008090' => 'chi', 'CARHR012130' => 'chi', 'CARHR038390' => 'chi', 'CARHR082330' => 'chi', 'CARHR120520' => 'chi', 'CARHR151470' => 'chi', 'CARHR190950' => 'chi', 'Carub.0001s0760' => 'cru', 'Carub.0001s1146' => 'cru', 'Carub.0003s0721' => 'cru', 'Carub.0004s0858' => 'cru', 'Carub.0005s1040' => 'cru', 'Carub.0006s2035' => 'cru', 'Carub.0015s0005' => 'cru', 'Ca_01607_v3' => 'car', 'Ca_01677_v3' => 'car', 'Ca_06087_v3' => 'car', 'Ca_19238_v3' => 'car', 'Ca_19373_v3' => 'car', 'Ca_21079_v3' => 'car', 'CBR_g54016' => 'cbr', 'CBR_g54018' => 'cbr', 'CBR_g54020' => 'cbr', 'Cc01_g09780' => 'ccan', 'Cc01_g11680' => 'ccan', 'Cc02_g15610' => 'ccan', 'Cc05_g04350' => 'ccan', 'Cc09_g01580' => 'ccan', 'CDE01G0795' => 'cde', 'CDE02G2024' => 'cde', 'CDE02G2260' => 'cde', 'CDE02G4561' => 'cde', 'CDE05G2733' => 'cde', 'CDE05G3422' => 'cde', 'CDE06G2003' => 'cde', 'CDE08G0576' => 'cde', 'CDE09G0048' => 'cde', 'CDE11G0805' => 'cde', 'Cfa003644' => 'cfa', 'Cfa006290' => 'cfa', 'Cfa010080' => 'cfa', 'Cfa011376' => 'cfa', 'Cfa011576' => 'cfa', 'Cfa011577' => 'cfa', 'Cfa014389' => 'cfa', 'Ciclev10006044m.g' => 'ccl', 'Ciclev10006954m.g' => 'ccl', 'Ciclev10015131m.g' => 'ccl', 'Ciclev10015580m.g' => 'ccl', 'Ciclev10028359m.g' => 'ccl', 'Ciclev10028573m.g' => 'ccl', 'CiPaw.03G159300' => 'cil', 'CiPaw.04G115100' => 'cil', 'CiPaw.09G092800' => 'cil', 'CiPaw.10G071800' => 'cil', 'CiPaw.13G105800' => 'cil', 'CiPaw.13G141000' => 'cil', 'CiPaw.14G103400' => 'cil', 'ClCG01G012700' => 'cla', 'ClCG01G012720' => 'cla', 'ClCG01G021920' => 'cla', 'ClCG02G008870' => 'cla', 'ClCG02G020840' => 'cla', 'ClCG02G021930' => 'cla', 'COL.COLO4_19302' => 'col', 'COL.COLO4_25262' => 'col', 'COL.COLO4_31788' => 'col', 'Cpa.g.c34684' => 'cpa', 'Cpa.g.c36520.1' => 'cpa', 'Cpa.g.c45626' => 'cpa', 'Cpa.g.sc121.17' => 'cpa', 'Cpa.g.sc13.22' => 'cpa', 'Cpa.g.sc87.88' => 'cpa', 'Cre06.g261800' => 'cre', 'CsaV3_1G014500' => 'csa', 'CsaV3_1G014510' => 'csa', 'CsaV3_2G034880' => 'csa', 'CsaV3_6G014760' => 'csa', 'CsaV3_6G021500' => 'csa', 'CsaV3_6G048980' => 'csa', 'CSS0002511' => 'camsi', 'CSS0007556' => 'camsi', 'CSS0008532' => 'camsi', 'CSS0009709' => 'camsi', 'CSS0010486' => 'camsi', 'CSS0016768' => 'camsi', 'CSS0023512' => 'camsi', 'CSS0025341' => 'camsi', 'CSS0027999' => 'camsi', 'CSS0028944' => 'camsi', 'CSS0032292' => 'camsi', 'CSS0032464' => 'camsi', 'CSS0037153' => 'camsi', 'CSS0039256' => 'camsi', 'CSS0048392' => 'camsi', 'CSS0050458' => 'camsi', 'DCAR_004224' => 'dca', 'DCAR_006147' => 'dca', 'DCAR_006465' => 'dca', 'DCAR_008159' => 'dca', 'DCAR_012164' => 'dca', 'DCAR_019764' => 'dca', 'Dinv05418' => 'din', 'Dinv10839' => 'din', 'Dinv12521' => 'din', 'Dinv13900' => 'din', 'Dinv29426' => 'din', 'Duzib150G0263' => 'dzi', 'Duzib168G1178' => 'dzi', 'Duzib168G1924' => 'dzi', 'Duzib170G0299' => 'dzi', 'Duzib170G0813' => 'dzi', 'Duzib235G1128' => 'dzi', 'Duzib248G1060' => 'dzi', 'ECA232G1910' => 'eca', 'ECA233G4621' => 'eca', 'ECA238G1216' => 'eca', 'ECA238G1784' => 'eca', 'ECA248G1242' => 'eca', 'EL10Ac8g20071' => 'bvu', 'EL10Ac9g21086' => 'bvu', 'EL10Ac9g22407' => 'bvu', 'EL10Ac9g22412' => 'bvu', 'Eucgr.A01119' => 'egr', 'Eucgr.E04043' => 'egr', 'Eucgr.J00428' => 'egr', 'Eucgr.J00958' => 'egr', 'FAN11G3091' => 'fan', 'FAN11G3651' => 'fan', 'FAN16G2566' => 'fan', 'FAN21G3155' => 'fan', 'FAN21G3400' => 'fan', 'FAN21G3543' => 'fan', 'FAN25G0234' => 'fan', 'FAN25G1422' => 'fan', 'FAN25G3392' => 'fan', 'FvH4_3g01940' => 'fve', 'FvH4_3g29870' => 'fve', 'FvH4_3g33680' => 'fve', 'Glyma.09G004200' => 'gma', 'Glyma.11G151288' => 'gma', 'Glyma.11G189100' => 'gma', 'Glyma.12G072500' => 'gma', 'Glyma.12G085500' => 'gma', 'Glyma.12G181800' => 'gma', 'Glyma.12G193000' => 'gma', 'Glyma.13G309300' => 'gma', 'Glyma.13G319000' => 'gma', 'Glyma.17G012600' => 'gma', 'Gohir.A06G148600' => 'ghi', 'Gohir.A07G115800' => 'ghi', 'Gohir.A08G003600' => 'ghi', 'Gohir.A09G093300' => 'ghi', 'Gohir.A09G105400' => 'ghi', 'Gohir.A09G105500' => 'ghi', 'Gohir.D06G154600' => 'ghi', 'Gohir.D07G120200' => 'ghi', 'Gohir.D08G013900' => 'ghi', 'Gohir.D09G093100' => 'ghi', 'Gohir.D09G102200' => 'ghi', 'Gohir.D09G102300' => 'ghi', 'Gorai.001G129400' => 'gra', 'Gorai.004G008200' => 'gra', 'Gorai.006G109800' => 'gra', 'Gorai.006G119500' => 'gra', 'Gorai.006G121300' => 'gra', 'Gorai.010G180700' => 'gra', 'GSVIVG01012716001' => 'vvi', 'GSVIVG01025118001' => 'vvi', 'GSVIVG01030439001' => 'vvi', 'GSVIVG01031397001' => 'vvi', 'HanXRQChr01g0004201' => 'han', 'HanXRQChr02g0054941' => 'han', 'HanXRQChr05g0141811' => 'han', 'HanXRQChr07g0197751' => 'han', 'HanXRQChr11g0346691' => 'han', 'HanXRQChr13g0396971' => 'han', 'HanXRQChr14g0432951' => 'han', 'HanXRQChr14g0452001' => 'han', 'HanXRQChr15g0496681' => 'han', 'HanXRQChr17g0557491' => 'han', 'HanXRQChr17g0557501' => 'han', 'Haze_06809' => 'cav', 'Haze_12852' => 'cav', 'Haze_15850' => 'cav', 'Haze_23446' => 'cav', 'Haze_23942' => 'cav', 'Haze_23943' => 'cav', 'Hma1.2p1_0091F.1_g046450' => 'hma', 'Hma1.2p1_0128F.1_g059910' => 'hma', 'Hma1.2p1_0249F.1_g102260' => 'hma', 'Hma1.2p1_0453F.1_g156190' => 'hma', 'Hma1.2p1_0695F.1_g204380' => 'hma', 'Hma1.2p1_0749F.1_g212650' => 'hma', 'Hma1.2p1_2156F.1_g315420' => 'hma', 'Hma1.2p1_2686F.1_g326940' => 'hma', 'HPP92_006428' => 'vpl', 'HPP92_012069' => 'vpl', 'HPP92_014129' => 'vpl', 'HPP92_014133' => 'vpl', 'HPP92_017315' => 'vpl', 'HPP92_026445' => 'vpl', 'HPP92_026446' => 'vpl', 'Hund00774' => 'sun', 'Hund07682' => 'sun', 'Hund21413' => 'sun', 'Hund23462' => 'sun', 'Hund23463' => 'sun', 'Lalb_Chr03g0027911' => 'lal', 'Lalb_Chr13g0304271' => 'lal', 'Lalb_Chr19g0137471' => 'lal', 'Lalb_Chr22g0350651' => 'lal', 'Lalb_Chr24g0395151' => 'lal', 'Lj1A1231T40' => 'lonja', 'Lj1A221T48' => 'lonja', 'Lj1C924T12' => 'lonja', 'Lj2C993G6' => 'lonja', 'Lj3g0005790' => 'lja', 'Lj3g0015432' => 'lja', 'Lj3g0017722' => 'lja', 'Lj3g0018497' => 'lja', 'Lj4g0025071' => 'lja', 'Lsat_1_v5_gn_1_129680' => 'lsa', 'Lsat_1_v5_gn_2_25321' => 'lsa', 'Lsat_1_v5_gn_2_95461' => 'lsa', 'Lsat_1_v5_gn_4_159620' => 'lsa', 'Lsat_1_v5_gn_6_41301' => 'lsa', 'Lsat_1_v5_gn_6_74660' => 'lsa', 'Lsat_1_v5_gn_7_11520' => 'lsa', 'Lsat_1_v5_gn_9_67680' => 'lsa', 'Manes.04G008300' => 'mes', 'Manes.04G008400' => 'mes', 'Manes.04G026500' => 'mes', 'Manes.10G135300' => 'mes', 'Manes.11G157300' => 'mes', 'Manes.12G074000' => 'mes', 'Manes.16G006200' => 'mes', 'Manes.17G026400' => 'mes', 'Mapoly0024s0086' => 'mpo', 'Mapoly0024s0087' => 'mpo', 'Mapoly0071s0057' => 'mpo', 'Mapoly0204s0012' => 'mpo', 'MBI04_g37681_MAGBIO' => 'mbi', 'MBI05_g17779_MAGBIO' => 'mbi', 'MBI12_g31184_MAGBIO' => 'mbi', 'MBI17_g11083_MAGBIO' => 'mbi', 'MBI18_g03883_MAGBIO' => 'mbi', 'MBI18_g28940_MAGBIO' => 'mbi', 'MCO01G690' => 'mco', 'MD03G1109900' => 'mdo', 'MD03G1134800' => 'mdo', 'MD05G1348000' => 'mdo', 'MD10G1322400' => 'mdo', 'MD11G1123300' => 'mdo', 'MD11G1157600' => 'mdo', 'Medtr2g084875' => 'mtr', 'Medtr2g088130' => 'mtr', 'Medtr4g055310' => 'mtr', 'Medtr4g061070' => 'mtr', 'Medtr4g132250' => 'mtr', 'MELO3C004795.2' => 'cme', 'MELO3C004797.2' => 'cme', 'MELO3C007396.2' => 'cme', 'MELO3C019277.2' => 'cme', 'MELO3C021449.2' => 'cme', 'MELO3C025736.2' => 'cme', 'Migut.D02175' => 'egut', 'Migut.H01573' => 'egut', 'Migut.M01327' => 'egut', 'Migut.N02513' => 'egut', 'MSTRG.14638' => 'ama', 'MSTRG.18632' => 'ama', 'MSTRG.7203' => 'ama', 'Nitab4.5_0000533g0140' => 'nta', 'Nitab4.5_0000888g0150' => 'nta', 'Nitab4.5_0001453g0040' => 'nta', 'Nitab4.5_0002827g0090' => 'nta', 'Nitab4.5_0003082g0040' => 'nta', 'Nitab4.5_0007799g0040' => 'nta', 'Nitab4.5_0008983g0010' => 'nta', 'Nitab4.5_0009017g0020' => 'nta', 'Nn1g02132' => 'nnu', 'Nn1g03492' => 'nnu', 'Nn1g03493' => 'nnu', 'Nn1g03494' => 'nnu', 'Nn1g07164' => 'nnu', 'Nn1g07291' => 'nnu', 'Nn2g10655' => 'nnu', 'Nn2g11652' => 'nnu', 'Nn2g14008' => 'nnu', 'Nn3g17476' => 'nnu', 'Nn3g17477' => 'nnu', 'Nn4g22370' => 'nnu', 'Nn4g25255' => 'nnu', 'Nn5g27755' => 'nnu', 'Nn6g34260' => 'nnu', 'Nn6g35041' => 'nnu', 'Oeu005924.1' => 'oeu', 'Oeu008383.1' => 'oeu', 'Oeu014928.1' => 'oeu', 'Oeu019889.1' => 'oeu', 'Oeu022271.1' => 'oeu', 'Oeu025271.1' => 'oeu', 'Oeu036302.1' => 'oeu', 'Oeu044100.1' => 'oeu', 'Os01g0528300' => 'osa', 'Os03g0286200' => 'osa', 'Os04g0406600' => 'osa', 'Os07g0512000' => 'osa', 'Os07g0694600' => 'osa', 'Os08g0411000' => 'osa', 'Os09g0565700' => 'osa', 'Os09g0566050' => 'osa', 'Os10g0523700' => 'osa', 'Peaxi162Scf00002g00514' => 'pax', 'Peaxi162Scf00047g01817' => 'pax', 'Peaxi162Scf00114g00001' => 'pax', 'Peaxi162Scf00147g00613' => 'pax', 'Peaxi162Scf00389g00425' => 'pax', 'PGR042G1139' => 'pgr', 'PGR042G3273' => 'pgr', 'PGR102G2180' => 'pgr', 'PGR119G0234' => 'pgr', 'PGR119G0668' => 'pgr', 'PGSC0003DMG400007122' => 'stu', 'PGSC0003DMG400016478' => 'stu', 'PGSC0003DMG400025374' => 'stu', 'PGSC0003DMG400026536' => 'stu', 'Phvul.003G079600' => 'pvu', 'Phvul.005G115600' => 'pvu', 'Phvul.005G127100' => 'pvu', 'Phvul.006G149500' => 'pvu', 'Phvul.006G149600' => 'pvu', 'Phvul.011G071800' => 'pvu', 'Phvul.011G090400' => 'pvu', 'Potri.004G013400' => 'ptr', 'Potri.004G188100' => 'ptr', 'Potri.008G195500' => 'ptr', 'Potri.009G148800' => 'ptr', 'Potri.011G004700' => 'ptr', 'Pp3c17_22810' => 'ppa', 'Pp3c18_4480' => 'ppa', 'Pp3c19_13030' => 'ppa', 'Pp3c1_33620' => 'ppa', 'Pp3c2_9380' => 'ppa', 'PRCOL_00001023' => 'pco', 'Prupe.3G216300' => 'ppe', 'Prupe.4G019500' => 'ppe', 'Prupe.6G092500' => 'ppe', 'Prupe.6G119200' => 'ppe', 'Psat0s1945g0080' => 'psa', 'Psat0s4167g0040' => 'psa', 'Psat1g185800' => 'psa', 'Psat4g006440' => 'psa', 'Psat4g006480' => 'psa', 'Psat4g168120' => 'psa', 'Psat5g255680' => 'psa', 'Psat5g261760' => 'psa', 'Psat7g222120' => 'psa', 'PSO063G7252' => 'pso', 'PSO170G4778' => 'pso', 'PSO210G2249' => 'pso', 'PSO339G2411' => 'pso', 'PSO339G2457' => 'pso', 'PSO339G2854' => 'pso', 'PSO339G4288' => 'pso', 'PSO339G4615' => 'pso', 'PSO384G2796' => 'pso', 'PSO384G2940' => 'pso', 'PSO384G4227' => 'pso', 'PSO478G1425' => 'pso', 'PSO541G3863' => 'pso', 'PSO675G0507' => 'pso', 'PSO782G0338' => 'pso', 'PSO832G0644' => 'pso', 'QL01p013664' => 'qlo', 'QL01p036598' => 'qlo', 'QL05p072984' => 'qlo', 'QL08p005768' => 'qlo', 'QL08p032743' => 'qlo', 'QL93p0073_0439' => 'qlo', 'QL93p0073_0444' => 'qlo', 'RcHm_v2.0_Chr5g0002851' => 'rch', 'RcHm_v2.0_Chr5g0055201' => 'rch', 'RcHm_v2.0_Chr5g0061191' => 'rch', 'RcHm_v2.0_Chr7g0203231' => 'rch', 'Rhsim01G0208100' => 'rsi', 'Rhsim01G0208200' => 'rsi', 'Rhsim02G0106500' => 'rsi', 'Rhsim03G0107900' => 'rsi', 'Rhsim06G0163400' => 'rsi', 'Rhsim13G0105200' => 'rsi', 'Sabra04G0006300' => 'sbr', 'Sabra04G0127000' => 'sbr', 'Sabra08G0148700' => 'sbr', 'Sabra09G0117400' => 'sbr', 'SalBow1G3326' => 'sbo', 'SalBow3G3228' => 'sbo', 'SalBow6G1634' => 'sbo', 'SalBow6G3603' => 'sbo', 'SalBow6G5266' => 'sbo', 'SalBow7G2265' => 'sbo', 'SalBow8G0850' => 'sbo', 'SalBow8G2592' => 'sbo', 'Sc05g0009240' => 'sci', 'Sc12g0002300' => 'sci', 'Sc21g0000100' => 'sci', 'Sc21g0004720' => 'sci', 'Sed0002949' => 'sed', 'Sed0004114' => 'sed', 'Sed0004306' => 'sed', 'Sed0006172' => 'sed', 'Sed0008413' => 'sed', 'Sed0013809' => 'sed', 'Sed0019556' => 'sed', 'SEGI_03570' => 'sgi', 'SEGI_07859' => 'sgi', 'SEGI_15042' => 'sgi', 'SEGI_16263' => 'sgi', 'SEGI_16552' => 'sgi', 'SEGI_24331' => 'sgi', 'SEGI_27316' => 'sgi', 'SEGI_29521' => 'sgi', 'SEGI_41342' => 'sgi', 'SGA_v2.0_scaffold27G11617' => 'sas', 'SGA_v2.0_scaffold316G48428' => 'sas', 'SGA_v2.0_scaffold49G18261' => 'sas', 'SGA_v2.0_scaffold7G03831' => 'sas', 'SGA_v2.0_scaffold93G28359' => 'sas', 'SHI02210' => 'shi', 'SHI06028' => 'shi', 'SHI06321' => 'shi', 'SMO111G0012' => 'smo', 'SMO228G0080' => 'smo', 'SMO356G0756' => 'smo', 'Solyc02g080620.3' => 'sly', 'Solyc06g074530.1' => 'sly', 'Solyc11g066890.1' => 'sly', 'Solyc11g072520.3' => 'sly', 'Sopen02g025330' => 'spe', 'Sopen06g031000' => 'spe', 'Sopen09g008240' => 'spe', 'Sopen09g025210' => 'spe', 'Sopen11g026600' => 'spe', 'Sopen11g030170' => 'spe', 'Sp1g10420' => 'spa', 'Sp3g06570' => 'spa', 'Sp4g10660' => 'spa', 'Sp5g16460' => 'spa', 'Sp6g22710' => 'spa', 'TAR365G0112' => 'tar', 'TAR369G0717' => 'tar', 'TAR374G0976' => 'tar', 'TAR623G1128' => 'tar', 'TAR626G1937' => 'tar', 'TAR627G0123' => 'tar', 'TAR628G0305' => 'tar', 'TAR636G1176' => 'tar', 'TAR636G2442' => 'tar', 'THA.LOC104800556' => 'tha', 'THA.LOC104809501' => 'tha', 'THA.LOC104815126' => 'tha', 'THA.LOC104815732' => 'tha', 'THA.LOC104823528' => 'tha', 'Thecc.02G365600' => 'tca', 'Thecc.06G222300' => 'tca', 'Thecc.09G261800' => 'tca', 'Thecc.09G291400' => 'tca', 'Thhalv10003028m.g' => 'esa', 'Thhalv10007886m.g' => 'esa', 'Thhalv10016085m.g' => 'esa', 'Thhalv10016681m.g' => 'esa', 'Thhalv10020951m.g' => 'esa', 'TPR.G15598' => 'tpr', 'TPR.G29305' => 'tpr', 'TPR.G32395' => 'tpr', 'TPR.G36998' => 'tpr', 'TPR.G4227' => 'tpr', 'TWI18G1433' => 'twi', 'TWI31G0755' => 'twi', 'TWI38G0912' => 'twi', 'TWI75G1097' => 'twi', 'TWI75G1619' => 'twi', 'TWI79G1336' => 'twi', 'unitig_0.g943' => 'ugi', 'unitig_0.g944' => 'ugi', 'unitig_22.g6646' => 'ugi', 'unitig_37.g12681' => 'ugi', 'unitig_8.g3290' => 'ugi', 'vmacro03278' => 'vma', 'vmacro12197' => 'vma', 'vmacro14478' => 'vma', 'vmacro15787' => 'vma', 'vmacro15789' => 'vma', 'vmacro15790' => 'vma', 'vmacro15806' => 'vma', 'vmacro22907' => 'vma', 'vmacro22908' => 'vma', 'vmacro22909' => 'vma', 'vmacro23108' => 'vma', 'VMungo0540G0540' => 'vmu', 'VMungo0540G2468' => 'vmu', 'VMungo1080G0390' => 'vmu', 'VMungo1080G1165' => 'vmu', 'VMungo1127G0170' => 'vmu', 'VMungo1127G2099' => 'vmu', 'VMungo1215G3013' => 'vmu', 'Zm00001eb013110' => 'zma', 'Zm00001eb084260' => 'zma', 'Zm00001eb096110' => 'zma', 'Zm00001eb217510' => 'zma', 'Zm00001eb322550' => 'zma', 'Zm00001eb390770' => 'zma', 'Zm00001eb397170' => 'zma', 'Zm00001eb404610' => 'zma', 'Zm00001eb421790' => 'zma' ) $gf_id = 'HOM05D000911' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000911' ) $data_identifier = 'HOM05D000911' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 16, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 5, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 6, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 8, 'nnu' => (int) 16, 'oeu' => (int) 8, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 5, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 16, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421790' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000911', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27780' => 'bna', 'A03p35380' => 'bna', 'A04p21160' => 'bna', 'A05p40570' => 'bna', 'A06p26900' => 'bna', 'A08p33230' => 'bna', 'A09p65960' => 'bna', 'A10p18290' => 'bna', 'Aa31LG1G12990' => 'aar', 'Aa31LG1G2980' => 'aar', 'Aa31LG4G14320' => 'aar', 'Aa31LG7G11800' => 'aar', 'Aa31sc36G50' => 'aar', 'Aa31sc36G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3721' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5459' => 'aag', 'Actinidia03028' => 'ach', 'Actinidia03753' => 'ach', 'Actinidia04187' => 'ach', 'Actinidia05509' => 'ach', 'Actinidia24180' => 'ach', 'Actinidia26906' => 'ach', 'Actinidia37097' => 'ach', 'Actinidia38249' => 'ach', 'Ah.01g003470' => 'amhyb', 'Ah.01g004580' => 'amhyb', 'Ah.01g014850' => 'amhyb', 'Ah.01g016830' => 'amhyb', 'Ah.14g088000' => 'amhyb', 'AL1G22980' => 'aly', 'AL3G18990' => 'aly', 'AL4G22440' => 'aly', 'AL4G33180' => 'aly', 'AL5G22920' => 'aly', 'AL6G33660' => 'aly', 'AL8G20720' => 'aly', 'Aqoxy1G00935' => 'aox', 'Aqoxy1G02094' => 'aox', 'Aqoxy2G01239' => 'aox', 'Aqoxy4G01870' => 'aox', 'Aqoxy7G00450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.36ZVTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71EM27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5D6C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH3WRE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3NCM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RIM768' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YB5YRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z36GDV' => 'arhy', 'AT1G08250' => 'ath', 'AT1G11790' => 'ath', 'AT2G27820' => 'ath', 'AT3G07630' => 'ath', 'AT3G44720' => 'ath', 'AT5G22630' => 'ath', 'ATR0693G304' => 'atr', 'ATR0794G109' => 'atr', 'ATR0820G120' => 'atr', 'ATR1159G064' => 'atr', 'Atru.chr10.2239' => 'acertr', 'Atru.chr3.3371' => 'acertr', 'Atru.chr6.3202' => 'acertr', 'AUR62006499' => 'cqu', 'AUR62012718' => 'cqu', 'AUR62021938' => 'cqu', 'AUR62023932' => 'cqu', 'AUR62025034' => 'cqu', 'AUR62025035' => 'cqu', 'AUR62038307' => 'cqu', 'AUR62043466' => 'cqu', 'BcaB02g10748' => 'bca', 'BcaB03g13231' => 'bca', 'BcaB03g14689' => 'bca', 'BcaB05g22716' => 'bca', 'BcaB06g28172' => 'bca', 'BcaB08g36413' => 'bca', 'BcaC01g02186' => 'bca', 'BcaC01g04272' => 'bca', 'BcaC02g08080' => 'bca', 'BcaC02g08227' => 'bca', 'BcaC03g13901' => 'bca', 'BcaC04g19593' => 'bca', 'BcaC04g20874' => 'bca', 'BcaC05g29557' => 'bca', 'BcaC06g35505' => 'bca', 'BcaC07g41954' => 'bca', 'BcaC07g41955' => 'bca', 'BcaC07g41956' => 'bca', 'BcaC07g42519' => 'bca', 'BcaC07g42520' => 'bca', 'BcaC07g42523' => 'bca', 'BcaC07g42524' => 'bca', 'BcaC07g42525' => 'bca', 'BcaC08g47480' => 'bca', 'BcaC08g47481' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00530' => 'bna', 'BolC2t07178H' => 'bol', 'BolC3t16567H' => 'bol', 'BolC4t27234H' => 'bol', 'BolC5t29728H' => 'bol', 'BolC5t34622H' => 'bol', 'BolC6t40321H' => 'bol', 'BolC7t42028H' => 'bol', 'BolC8t49125H' => 'bol', 'BolC8t52538H' => 'bol', 'BolC8t52539H' => 'bol', 'BolC9t56681H' => 'bol', 'BolC9t58266H' => 'bol', 'BolSC21t60294H' => 'bol', 'BraA02t05670Z' => 'bra', 'BraA03t12716Z' => 'bra', 'BraA04t17685Z' => 'bra', 'BraA05t22788Z' => 'bra', 'BraA06t24032Z' => 'bra', 'BraA06t25625Z' => 'bra', 'BraA07t27930Z' => 'bra', 'BraA08t35242Z' => 'bra', 'BraA09t38609Z' => 'bra', 'BraA10t43905Z' => 'bra', 'C02p11060' => 'bna', 'C03p42990' => 'bna', 'C03p67310' => 'bna', 'C04p56990' => 'bna', 'C04p58660' => 'bna', 'C05p09890' => 'bna', 'C05p59680' => 'bna', 'C06p19830' => 'bna', 'C06p53040' => 'bna', 'C07p15230' => 'bna', 'C08p50070' => 'bna', 'C08p50090' => 'bna', 'C09p38330' => 'bna', 'C09p53940' => 'bna', 'CAN.G1014.1' => 'can', 'CAN.G644.30' => 'can', 'CAN.G84.47' => 'can', 'CAN.G919.8' => 'can', 'CANSAT54G0113' => 'cansat', 'CANSAT54G1286' => 'cansat', 'CANSAT64G1020' => 'cansat', 'CARHR008080' => 'chi', 'CARHR008090' => 'chi', 'CARHR012130' => 'chi', 'CARHR038390' => 'chi', 'CARHR082330' => 'chi', 'CARHR120520' => 'chi', 'CARHR151470' => 'chi', 'CARHR190950' => 'chi', 'Carub.0001s0760' => 'cru', 'Carub.0001s1146' => 'cru', 'Carub.0003s0721' => 'cru', 'Carub.0004s0858' => 'cru', 'Carub.0005s1040' => 'cru', 'Carub.0006s2035' => 'cru', 'Carub.0015s0005' => 'cru', 'Ca_01607_v3' => 'car', 'Ca_01677_v3' => 'car', 'Ca_06087_v3' => 'car', 'Ca_19238_v3' => 'car', 'Ca_19373_v3' => 'car', 'Ca_21079_v3' => 'car', 'CBR_g54016' => 'cbr', 'CBR_g54018' => 'cbr', 'CBR_g54020' => 'cbr', 'Cc01_g09780' => 'ccan', 'Cc01_g11680' => 'ccan', 'Cc02_g15610' => 'ccan', 'Cc05_g04350' => 'ccan', 'Cc09_g01580' => 'ccan', 'CDE01G0795' => 'cde', 'CDE02G2024' => 'cde', 'CDE02G2260' => 'cde', 'CDE02G4561' => 'cde', 'CDE05G2733' => 'cde', 'CDE05G3422' => 'cde', 'CDE06G2003' => 'cde', 'CDE08G0576' => 'cde', 'CDE09G0048' => 'cde', 'CDE11G0805' => 'cde', 'Cfa003644' => 'cfa', 'Cfa006290' => 'cfa', 'Cfa010080' => 'cfa', 'Cfa011376' => 'cfa', 'Cfa011576' => 'cfa', 'Cfa011577' => 'cfa', 'Cfa014389' => 'cfa', 'Ciclev10006044m.g' => 'ccl', 'Ciclev10006954m.g' => 'ccl', 'Ciclev10015131m.g' => 'ccl', 'Ciclev10015580m.g' => 'ccl', 'Ciclev10028359m.g' => 'ccl', 'Ciclev10028573m.g' => 'ccl', 'CiPaw.03G159300' => 'cil', 'CiPaw.04G115100' => 'cil', 'CiPaw.09G092800' => 'cil', 'CiPaw.10G071800' => 'cil', 'CiPaw.13G105800' => 'cil', 'CiPaw.13G141000' => 'cil', 'CiPaw.14G103400' => 'cil', 'ClCG01G012700' => 'cla', 'ClCG01G012720' => 'cla', 'ClCG01G021920' => 'cla', 'ClCG02G008870' => 'cla', 'ClCG02G020840' => 'cla', 'ClCG02G021930' => 'cla', 'COL.COLO4_19302' => 'col', 'COL.COLO4_25262' => 'col', 'COL.COLO4_31788' => 'col', 'Cpa.g.c34684' => 'cpa', 'Cpa.g.c36520.1' => 'cpa', 'Cpa.g.c45626' => 'cpa', 'Cpa.g.sc121.17' => 'cpa', 'Cpa.g.sc13.22' => 'cpa', 'Cpa.g.sc87.88' => 'cpa', 'Cre06.g261800' => 'cre', 'CsaV3_1G014500' => 'csa', 'CsaV3_1G014510' => 'csa', 'CsaV3_2G034880' => 'csa', 'CsaV3_6G014760' => 'csa', 'CsaV3_6G021500' => 'csa', 'CsaV3_6G048980' => 'csa', 'CSS0002511' => 'camsi', 'CSS0007556' => 'camsi', 'CSS0008532' => 'camsi', 'CSS0009709' => 'camsi', 'CSS0010486' => 'camsi', 'CSS0016768' => 'camsi', 'CSS0023512' => 'camsi', 'CSS0025341' => 'camsi', 'CSS0027999' => 'camsi', 'CSS0028944' => 'camsi', 'CSS0032292' => 'camsi', 'CSS0032464' => 'camsi', 'CSS0037153' => 'camsi', 'CSS0039256' => 'camsi', 'CSS0048392' => 'camsi', 'CSS0050458' => 'camsi', 'DCAR_004224' => 'dca', 'DCAR_006147' => 'dca', 'DCAR_006465' => 'dca', 'DCAR_008159' => 'dca', 'DCAR_012164' => 'dca', 'DCAR_019764' => 'dca', 'Dinv05418' => 'din', 'Dinv10839' => 'din', 'Dinv12521' => 'din', 'Dinv13900' => 'din', 'Dinv29426' => 'din', 'Duzib150G0263' => 'dzi', 'Duzib168G1178' => 'dzi', 'Duzib168G1924' => 'dzi', 'Duzib170G0299' => 'dzi', 'Duzib170G0813' => 'dzi', 'Duzib235G1128' => 'dzi', 'Duzib248G1060' => 'dzi', 'ECA232G1910' => 'eca', 'ECA233G4621' => 'eca', 'ECA238G1216' => 'eca', 'ECA238G1784' => 'eca', 'ECA248G1242' => 'eca', 'EL10Ac8g20071' => 'bvu', 'EL10Ac9g21086' => 'bvu', 'EL10Ac9g22407' => 'bvu', 'EL10Ac9g22412' => 'bvu', 'Eucgr.A01119' => 'egr', 'Eucgr.E04043' => 'egr', 'Eucgr.J00428' => 'egr', 'Eucgr.J00958' => 'egr', 'FAN11G3091' => 'fan', 'FAN11G3651' => 'fan', 'FAN16G2566' => 'fan', 'FAN21G3155' => 'fan', 'FAN21G3400' => 'fan', 'FAN21G3543' => 'fan', 'FAN25G0234' => 'fan', 'FAN25G1422' => 'fan', 'FAN25G3392' => 'fan', 'FvH4_3g01940' => 'fve', 'FvH4_3g29870' => 'fve', 'FvH4_3g33680' => 'fve', 'Glyma.09G004200' => 'gma', 'Glyma.11G151288' => 'gma', 'Glyma.11G189100' => 'gma', 'Glyma.12G072500' => 'gma', 'Glyma.12G085500' => 'gma', 'Glyma.12G181800' => 'gma', 'Glyma.12G193000' => 'gma', 'Glyma.13G309300' => 'gma', 'Glyma.13G319000' => 'gma', 'Glyma.17G012600' => 'gma', 'Gohir.A06G148600' => 'ghi', 'Gohir.A07G115800' => 'ghi', 'Gohir.A08G003600' => 'ghi', 'Gohir.A09G093300' => 'ghi', 'Gohir.A09G105400' => 'ghi', 'Gohir.A09G105500' => 'ghi', 'Gohir.D06G154600' => 'ghi', 'Gohir.D07G120200' => 'ghi', 'Gohir.D08G013900' => 'ghi', 'Gohir.D09G093100' => 'ghi', 'Gohir.D09G102200' => 'ghi', 'Gohir.D09G102300' => 'ghi', 'Gorai.001G129400' => 'gra', 'Gorai.004G008200' => 'gra', 'Gorai.006G109800' => 'gra', 'Gorai.006G119500' => 'gra', 'Gorai.006G121300' => 'gra', 'Gorai.010G180700' => 'gra', 'GSVIVG01012716001' => 'vvi', 'GSVIVG01025118001' => 'vvi', 'GSVIVG01030439001' => 'vvi', 'GSVIVG01031397001' => 'vvi', 'HanXRQChr01g0004201' => 'han', 'HanXRQChr02g0054941' => 'han', 'HanXRQChr05g0141811' => 'han', 'HanXRQChr07g0197751' => 'han', 'HanXRQChr11g0346691' => 'han', 'HanXRQChr13g0396971' => 'han', 'HanXRQChr14g0432951' => 'han', 'HanXRQChr14g0452001' => 'han', 'HanXRQChr15g0496681' => 'han', 'HanXRQChr17g0557491' => 'han', 'HanXRQChr17g0557501' => 'han', 'Haze_06809' => 'cav', 'Haze_12852' => 'cav', 'Haze_15850' => 'cav', 'Haze_23446' => 'cav', 'Haze_23942' => 'cav', 'Haze_23943' => 'cav', 'Hma1.2p1_0091F.1_g046450' => 'hma', 'Hma1.2p1_0128F.1_g059910' => 'hma', 'Hma1.2p1_0249F.1_g102260' => 'hma', 'Hma1.2p1_0453F.1_g156190' => 'hma', 'Hma1.2p1_0695F.1_g204380' => 'hma', 'Hma1.2p1_0749F.1_g212650' => 'hma', 'Hma1.2p1_2156F.1_g315420' => 'hma', 'Hma1.2p1_2686F.1_g326940' => 'hma', 'HPP92_006428' => 'vpl', 'HPP92_012069' => 'vpl', 'HPP92_014129' => 'vpl', 'HPP92_014133' => 'vpl', 'HPP92_017315' => 'vpl', 'HPP92_026445' => 'vpl', 'HPP92_026446' => 'vpl', 'Hund00774' => 'sun', 'Hund07682' => 'sun', 'Hund21413' => 'sun', 'Hund23462' => 'sun', 'Hund23463' => 'sun', 'Lalb_Chr03g0027911' => 'lal', 'Lalb_Chr13g0304271' => 'lal', 'Lalb_Chr19g0137471' => 'lal', 'Lalb_Chr22g0350651' => 'lal', 'Lalb_Chr24g0395151' => 'lal', 'Lj1A1231T40' => 'lonja', 'Lj1A221T48' => 'lonja', 'Lj1C924T12' => 'lonja', 'Lj2C993G6' => 'lonja', 'Lj3g0005790' => 'lja', 'Lj3g0015432' => 'lja', 'Lj3g0017722' => 'lja', 'Lj3g0018497' => 'lja', 'Lj4g0025071' => 'lja', 'Lsat_1_v5_gn_1_129680' => 'lsa', 'Lsat_1_v5_gn_2_25321' => 'lsa', 'Lsat_1_v5_gn_2_95461' => 'lsa', 'Lsat_1_v5_gn_4_159620' => 'lsa', 'Lsat_1_v5_gn_6_41301' => 'lsa', 'Lsat_1_v5_gn_6_74660' => 'lsa', 'Lsat_1_v5_gn_7_11520' => 'lsa', 'Lsat_1_v5_gn_9_67680' => 'lsa', 'Manes.04G008300' => 'mes', 'Manes.04G008400' => 'mes', 'Manes.04G026500' => 'mes', 'Manes.10G135300' => 'mes', 'Manes.11G157300' => 'mes', 'Manes.12G074000' => 'mes', 'Manes.16G006200' => 'mes', 'Manes.17G026400' => 'mes', 'Mapoly0024s0086' => 'mpo', 'Mapoly0024s0087' => 'mpo', 'Mapoly0071s0057' => 'mpo', 'Mapoly0204s0012' => 'mpo', 'MBI04_g37681_MAGBIO' => 'mbi', 'MBI05_g17779_MAGBIO' => 'mbi', 'MBI12_g31184_MAGBIO' => 'mbi', 'MBI17_g11083_MAGBIO' => 'mbi', 'MBI18_g03883_MAGBIO' => 'mbi', 'MBI18_g28940_MAGBIO' => 'mbi', 'MCO01G690' => 'mco', 'MD03G1109900' => 'mdo', 'MD03G1134800' => 'mdo', 'MD05G1348000' => 'mdo', 'MD10G1322400' => 'mdo', 'MD11G1123300' => 'mdo', 'MD11G1157600' => 'mdo', 'Medtr2g084875' => 'mtr', 'Medtr2g088130' => 'mtr', 'Medtr4g055310' => 'mtr', 'Medtr4g061070' => 'mtr', 'Medtr4g132250' => 'mtr', 'MELO3C004795.2' => 'cme', 'MELO3C004797.2' => 'cme', 'MELO3C007396.2' => 'cme', 'MELO3C019277.2' => 'cme', 'MELO3C021449.2' => 'cme', 'MELO3C025736.2' => 'cme', 'Migut.D02175' => 'egut', 'Migut.H01573' => 'egut', 'Migut.M01327' => 'egut', 'Migut.N02513' => 'egut', 'MSTRG.14638' => 'ama', 'MSTRG.18632' => 'ama', 'MSTRG.7203' => 'ama', 'Nitab4.5_0000533g0140' => 'nta', 'Nitab4.5_0000888g0150' => 'nta', 'Nitab4.5_0001453g0040' => 'nta', 'Nitab4.5_0002827g0090' => 'nta', 'Nitab4.5_0003082g0040' => 'nta', 'Nitab4.5_0007799g0040' => 'nta', 'Nitab4.5_0008983g0010' => 'nta', 'Nitab4.5_0009017g0020' => 'nta', 'Nn1g02132' => 'nnu', 'Nn1g03492' => 'nnu', 'Nn1g03493' => 'nnu', 'Nn1g03494' => 'nnu', 'Nn1g07164' => 'nnu', 'Nn1g07291' => 'nnu', 'Nn2g10655' => 'nnu', 'Nn2g11652' => 'nnu', 'Nn2g14008' => 'nnu', 'Nn3g17476' => 'nnu', 'Nn3g17477' => 'nnu', 'Nn4g22370' => 'nnu', 'Nn4g25255' => 'nnu', 'Nn5g27755' => 'nnu', 'Nn6g34260' => 'nnu', 'Nn6g35041' => 'nnu', 'Oeu005924.1' => 'oeu', 'Oeu008383.1' => 'oeu', 'Oeu014928.1' => 'oeu', 'Oeu019889.1' => 'oeu', 'Oeu022271.1' => 'oeu', 'Oeu025271.1' => 'oeu', 'Oeu036302.1' => 'oeu', 'Oeu044100.1' => 'oeu', 'Os01g0528300' => 'osa', 'Os03g0286200' => 'osa', 'Os04g0406600' => 'osa', 'Os07g0512000' => 'osa', 'Os07g0694600' => 'osa', 'Os08g0411000' => 'osa', 'Os09g0565700' => 'osa', 'Os09g0566050' => 'osa', 'Os10g0523700' => 'osa', 'Peaxi162Scf00002g00514' => 'pax', 'Peaxi162Scf00047g01817' => 'pax', 'Peaxi162Scf00114g00001' => 'pax', 'Peaxi162Scf00147g00613' => 'pax', 'Peaxi162Scf00389g00425' => 'pax', 'PGR042G1139' => 'pgr', 'PGR042G3273' => 'pgr', 'PGR102G2180' => 'pgr', 'PGR119G0234' => 'pgr', 'PGR119G0668' => 'pgr', 'PGSC0003DMG400007122' => 'stu', 'PGSC0003DMG400016478' => 'stu', 'PGSC0003DMG400025374' => 'stu', 'PGSC0003DMG400026536' => 'stu', 'Phvul.003G079600' => 'pvu', 'Phvul.005G115600' => 'pvu', 'Phvul.005G127100' => 'pvu', 'Phvul.006G149500' => 'pvu', 'Phvul.006G149600' => 'pvu', 'Phvul.011G071800' => 'pvu', 'Phvul.011G090400' => 'pvu', 'Potri.004G013400' => 'ptr', 'Potri.004G188100' => 'ptr', 'Potri.008G195500' => 'ptr', 'Potri.009G148800' => 'ptr', 'Potri.011G004700' => 'ptr', 'Pp3c17_22810' => 'ppa', 'Pp3c18_4480' => 'ppa', 'Pp3c19_13030' => 'ppa', 'Pp3c1_33620' => 'ppa', 'Pp3c2_9380' => 'ppa', 'PRCOL_00001023' => 'pco', 'Prupe.3G216300' => 'ppe', 'Prupe.4G019500' => 'ppe', 'Prupe.6G092500' => 'ppe', 'Prupe.6G119200' => 'ppe', 'Psat0s1945g0080' => 'psa', 'Psat0s4167g0040' => 'psa', 'Psat1g185800' => 'psa', 'Psat4g006440' => 'psa', 'Psat4g006480' => 'psa', 'Psat4g168120' => 'psa', 'Psat5g255680' => 'psa', 'Psat5g261760' => 'psa', 'Psat7g222120' => 'psa', 'PSO063G7252' => 'pso', 'PSO170G4778' => 'pso', 'PSO210G2249' => 'pso', 'PSO339G2411' => 'pso', 'PSO339G2457' => 'pso', 'PSO339G2854' => 'pso', 'PSO339G4288' => 'pso', 'PSO339G4615' => 'pso', 'PSO384G2796' => 'pso', 'PSO384G2940' => 'pso', 'PSO384G4227' => 'pso', 'PSO478G1425' => 'pso', 'PSO541G3863' => 'pso', 'PSO675G0507' => 'pso', 'PSO782G0338' => 'pso', 'PSO832G0644' => 'pso', 'QL01p013664' => 'qlo', 'QL01p036598' => 'qlo', 'QL05p072984' => 'qlo', 'QL08p005768' => 'qlo', 'QL08p032743' => 'qlo', 'QL93p0073_0439' => 'qlo', 'QL93p0073_0444' => 'qlo', 'RcHm_v2.0_Chr5g0002851' => 'rch', 'RcHm_v2.0_Chr5g0055201' => 'rch', 'RcHm_v2.0_Chr5g0061191' => 'rch', 'RcHm_v2.0_Chr7g0203231' => 'rch', 'Rhsim01G0208100' => 'rsi', 'Rhsim01G0208200' => 'rsi', 'Rhsim02G0106500' => 'rsi', 'Rhsim03G0107900' => 'rsi', 'Rhsim06G0163400' => 'rsi', 'Rhsim13G0105200' => 'rsi', 'Sabra04G0006300' => 'sbr', 'Sabra04G0127000' => 'sbr', 'Sabra08G0148700' => 'sbr', 'Sabra09G0117400' => 'sbr', 'SalBow1G3326' => 'sbo', 'SalBow3G3228' => 'sbo', 'SalBow6G1634' => 'sbo', 'SalBow6G3603' => 'sbo', 'SalBow6G5266' => 'sbo', 'SalBow7G2265' => 'sbo', 'SalBow8G0850' => 'sbo', 'SalBow8G2592' => 'sbo', 'Sc05g0009240' => 'sci', 'Sc12g0002300' => 'sci', 'Sc21g0000100' => 'sci', 'Sc21g0004720' => 'sci', 'Sed0002949' => 'sed', 'Sed0004114' => 'sed', 'Sed0004306' => 'sed', 'Sed0006172' => 'sed', 'Sed0008413' => 'sed', 'Sed0013809' => 'sed', 'Sed0019556' => 'sed', 'SEGI_03570' => 'sgi', 'SEGI_07859' => 'sgi', 'SEGI_15042' => 'sgi', 'SEGI_16263' => 'sgi', 'SEGI_16552' => 'sgi', 'SEGI_24331' => 'sgi', 'SEGI_27316' => 'sgi', 'SEGI_29521' => 'sgi', 'SEGI_41342' => 'sgi', 'SGA_v2.0_scaffold27G11617' => 'sas', 'SGA_v2.0_scaffold316G48428' => 'sas', 'SGA_v2.0_scaffold49G18261' => 'sas', 'SGA_v2.0_scaffold7G03831' => 'sas', 'SGA_v2.0_scaffold93G28359' => 'sas', 'SHI02210' => 'shi', 'SHI06028' => 'shi', 'SHI06321' => 'shi', 'SMO111G0012' => 'smo', 'SMO228G0080' => 'smo', 'SMO356G0756' => 'smo', 'Solyc02g080620.3' => 'sly', 'Solyc06g074530.1' => 'sly', 'Solyc11g066890.1' => 'sly', 'Solyc11g072520.3' => 'sly', 'Sopen02g025330' => 'spe', 'Sopen06g031000' => 'spe', 'Sopen09g008240' => 'spe', 'Sopen09g025210' => 'spe', 'Sopen11g026600' => 'spe', 'Sopen11g030170' => 'spe', 'Sp1g10420' => 'spa', 'Sp3g06570' => 'spa', 'Sp4g10660' => 'spa', 'Sp5g16460' => 'spa', 'Sp6g22710' => 'spa', 'TAR365G0112' => 'tar', 'TAR369G0717' => 'tar', 'TAR374G0976' => 'tar', 'TAR623G1128' => 'tar', 'TAR626G1937' => 'tar', 'TAR627G0123' => 'tar', 'TAR628G0305' => 'tar', 'TAR636G1176' => 'tar', 'TAR636G2442' => 'tar', 'THA.LOC104800556' => 'tha', 'THA.LOC104809501' => 'tha', 'THA.LOC104815126' => 'tha', 'THA.LOC104815732' => 'tha', 'THA.LOC104823528' => 'tha', 'Thecc.02G365600' => 'tca', 'Thecc.06G222300' => 'tca', 'Thecc.09G261800' => 'tca', 'Thecc.09G291400' => 'tca', 'Thhalv10003028m.g' => 'esa', 'Thhalv10007886m.g' => 'esa', 'Thhalv10016085m.g' => 'esa', 'Thhalv10016681m.g' => 'esa', 'Thhalv10020951m.g' => 'esa', 'TPR.G15598' => 'tpr', 'TPR.G29305' => 'tpr', 'TPR.G32395' => 'tpr', 'TPR.G36998' => 'tpr', 'TPR.G4227' => 'tpr', 'TWI18G1433' => 'twi', 'TWI31G0755' => 'twi', 'TWI38G0912' => 'twi', 'TWI75G1097' => 'twi', 'TWI75G1619' => 'twi', 'TWI79G1336' => 'twi', 'unitig_0.g943' => 'ugi', 'unitig_0.g944' => 'ugi', 'unitig_22.g6646' => 'ugi', 'unitig_37.g12681' => 'ugi', 'unitig_8.g3290' => 'ugi', 'vmacro03278' => 'vma', 'vmacro12197' => 'vma', 'vmacro14478' => 'vma', 'vmacro15787' => 'vma', 'vmacro15789' => 'vma', 'vmacro15790' => 'vma', 'vmacro15806' => 'vma', 'vmacro22907' => 'vma', 'vmacro22908' => 'vma', 'vmacro22909' => 'vma', 'vmacro23108' => 'vma', 'VMungo0540G0540' => 'vmu', 'VMungo0540G2468' => 'vmu', 'VMungo1080G0390' => 'vmu', 'VMungo1080G1165' => 'vmu', 'VMungo1127G0170' => 'vmu', 'VMungo1127G2099' => 'vmu', 'VMungo1215G3013' => 'vmu', 'Zm00001eb013110' => 'zma', 'Zm00001eb084260' => 'zma', 'Zm00001eb096110' => 'zma', 'Zm00001eb217510' => 'zma', 'Zm00001eb322550' => 'zma', 'Zm00001eb390770' => 'zma', 'Zm00001eb397170' => 'zma', 'Zm00001eb404610' => 'zma', 'Zm00001eb421790' => 'zma' ), 'gf_id' => 'HOM05D000911', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000911' ), 'data_identifier' => 'HOM05D000911', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000911', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27780' => 'bna', 'A03p35380' => 'bna', 'A04p21160' => 'bna', 'A05p40570' => 'bna', 'A06p26900' => 'bna', 'A08p33230' => 'bna', 'A09p65960' => 'bna', 'A10p18290' => 'bna', 'Aa31LG1G12990' => 'aar', 'Aa31LG1G2980' => 'aar', 'Aa31LG4G14320' => 'aar', 'Aa31LG7G11800' => 'aar', 'Aa31sc36G50' => 'aar', 'Aa31sc36G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3721' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5459' => 'aag', 'Actinidia03028' => 'ach', 'Actinidia03753' => 'ach', 'Actinidia04187' => 'ach', 'Actinidia05509' => 'ach', 'Actinidia24180' => 'ach', 'Actinidia26906' => 'ach', 'Actinidia37097' => 'ach', 'Actinidia38249' => 'ach', 'Ah.01g003470' => 'amhyb', 'Ah.01g004580' => 'amhyb', 'Ah.01g014850' => 'amhyb', 'Ah.01g016830' => 'amhyb', 'Ah.14g088000' => 'amhyb', 'AL1G22980' => 'aly', 'AL3G18990' => 'aly', 'AL4G22440' => 'aly', 'AL4G33180' => 'aly', 'AL5G22920' => 'aly', 'AL6G33660' => 'aly', 'AL8G20720' => 'aly', 'Aqoxy1G00935' => 'aox', 'Aqoxy1G02094' => 'aox', 'Aqoxy2G01239' => 'aox', 'Aqoxy4G01870' => 'aox', 'Aqoxy7G00450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.36ZVTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71EM27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5D6C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH3WRE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3NCM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RIM768' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YB5YRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z36GDV' => 'arhy', 'AT1G08250' => 'ath', 'AT1G11790' => 'ath', 'AT2G27820' => 'ath', 'AT3G07630' => 'ath', 'AT3G44720' => 'ath', 'AT5G22630' => 'ath', 'ATR0693G304' => 'atr', 'ATR0794G109' => 'atr', 'ATR0820G120' => 'atr', 'ATR1159G064' => 'atr', 'Atru.chr10.2239' => 'acertr', 'Atru.chr3.3371' => 'acertr', 'Atru.chr6.3202' => 'acertr', 'AUR62006499' => 'cqu', 'AUR62012718' => 'cqu', 'AUR62021938' => 'cqu', 'AUR62023932' => 'cqu', 'AUR62025034' => 'cqu', 'AUR62025035' => 'cqu', 'AUR62038307' => 'cqu', 'AUR62043466' => 'cqu', 'BcaB02g10748' => 'bca', 'BcaB03g13231' => 'bca', 'BcaB03g14689' => 'bca', 'BcaB05g22716' => 'bca', 'BcaB06g28172' => 'bca', 'BcaB08g36413' => 'bca', 'BcaC01g02186' => 'bca', 'BcaC01g04272' => 'bca', 'BcaC02g08080' => 'bca', 'BcaC02g08227' => 'bca', 'BcaC03g13901' => 'bca', 'BcaC04g19593' => 'bca', 'BcaC04g20874' => 'bca', 'BcaC05g29557' => 'bca', 'BcaC06g35505' => 'bca', 'BcaC07g41954' => 'bca', 'BcaC07g41955' => 'bca', 'BcaC07g41956' => 'bca', 'BcaC07g42519' => 'bca', 'BcaC07g42520' => 'bca', 'BcaC07g42523' => 'bca', 'BcaC07g42524' => 'bca', 'BcaC07g42525' => 'bca', 'BcaC08g47480' => 'bca', 'BcaC08g47481' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00530' => 'bna', 'BolC2t07178H' => 'bol', 'BolC3t16567H' => 'bol', 'BolC4t27234H' => 'bol', 'BolC5t29728H' => 'bol', 'BolC5t34622H' => 'bol', 'BolC6t40321H' => 'bol', 'BolC7t42028H' => 'bol', 'BolC8t49125H' => 'bol', 'BolC8t52538H' => 'bol', 'BolC8t52539H' => 'bol', 'BolC9t56681H' => 'bol', 'BolC9t58266H' => 'bol', 'BolSC21t60294H' => 'bol', 'BraA02t05670Z' => 'bra', 'BraA03t12716Z' => 'bra', 'BraA04t17685Z' => 'bra', 'BraA05t22788Z' => 'bra', 'BraA06t24032Z' => 'bra', 'BraA06t25625Z' => 'bra', 'BraA07t27930Z' => 'bra', 'BraA08t35242Z' => 'bra', 'BraA09t38609Z' => 'bra', 'BraA10t43905Z' => 'bra', 'C02p11060' => 'bna', 'C03p42990' => 'bna', 'C03p67310' => 'bna', 'C04p56990' => 'bna', 'C04p58660' => 'bna', 'C05p09890' => 'bna', 'C05p59680' => 'bna', 'C06p19830' => 'bna', 'C06p53040' => 'bna', 'C07p15230' => 'bna', 'C08p50070' => 'bna', 'C08p50090' => 'bna', 'C09p38330' => 'bna', 'C09p53940' => 'bna', 'CAN.G1014.1' => 'can', 'CAN.G644.30' => 'can', 'CAN.G84.47' => 'can', 'CAN.G919.8' => 'can', 'CANSAT54G0113' => 'cansat', 'CANSAT54G1286' => 'cansat', 'CANSAT64G1020' => 'cansat', 'CARHR008080' => 'chi', 'CARHR008090' => 'chi', 'CARHR012130' => 'chi', 'CARHR038390' => 'chi', 'CARHR082330' => 'chi', 'CARHR120520' => 'chi', 'CARHR151470' => 'chi', 'CARHR190950' => 'chi', 'Carub.0001s0760' => 'cru', 'Carub.0001s1146' => 'cru', 'Carub.0003s0721' => 'cru', 'Carub.0004s0858' => 'cru', 'Carub.0005s1040' => 'cru', 'Carub.0006s2035' => 'cru', 'Carub.0015s0005' => 'cru', 'Ca_01607_v3' => 'car', 'Ca_01677_v3' => 'car', 'Ca_06087_v3' => 'car', 'Ca_19238_v3' => 'car', 'Ca_19373_v3' => 'car', 'Ca_21079_v3' => 'car', 'CBR_g54016' => 'cbr', 'CBR_g54018' => 'cbr', 'CBR_g54020' => 'cbr', 'Cc01_g09780' => 'ccan', 'Cc01_g11680' => 'ccan', 'Cc02_g15610' => 'ccan', 'Cc05_g04350' => 'ccan', 'Cc09_g01580' => 'ccan', 'CDE01G0795' => 'cde', 'CDE02G2024' => 'cde', 'CDE02G2260' => 'cde', 'CDE02G4561' => 'cde', 'CDE05G2733' => 'cde', 'CDE05G3422' => 'cde', 'CDE06G2003' => 'cde', 'CDE08G0576' => 'cde', 'CDE09G0048' => 'cde', 'CDE11G0805' => 'cde', 'Cfa003644' => 'cfa', 'Cfa006290' => 'cfa', 'Cfa010080' => 'cfa', 'Cfa011376' => 'cfa', 'Cfa011576' => 'cfa', 'Cfa011577' => 'cfa', 'Cfa014389' => 'cfa', 'Ciclev10006044m.g' => 'ccl', 'Ciclev10006954m.g' => 'ccl', 'Ciclev10015131m.g' => 'ccl', 'Ciclev10015580m.g' => 'ccl', 'Ciclev10028359m.g' => 'ccl', 'Ciclev10028573m.g' => 'ccl', 'CiPaw.03G159300' => 'cil', 'CiPaw.04G115100' => 'cil', 'CiPaw.09G092800' => 'cil', 'CiPaw.10G071800' => 'cil', 'CiPaw.13G105800' => 'cil', 'CiPaw.13G141000' => 'cil', 'CiPaw.14G103400' => 'cil', 'ClCG01G012700' => 'cla', 'ClCG01G012720' => 'cla', 'ClCG01G021920' => 'cla', 'ClCG02G008870' => 'cla', 'ClCG02G020840' => 'cla', 'ClCG02G021930' => 'cla', 'COL.COLO4_19302' => 'col', 'COL.COLO4_25262' => 'col', 'COL.COLO4_31788' => 'col', 'Cpa.g.c34684' => 'cpa', 'Cpa.g.c36520.1' => 'cpa', 'Cpa.g.c45626' => 'cpa', 'Cpa.g.sc121.17' => 'cpa', 'Cpa.g.sc13.22' => 'cpa', 'Cpa.g.sc87.88' => 'cpa', 'Cre06.g261800' => 'cre', 'CsaV3_1G014500' => 'csa', 'CsaV3_1G014510' => 'csa', 'CsaV3_2G034880' => 'csa', 'CsaV3_6G014760' => 'csa', 'CsaV3_6G021500' => 'csa', 'CsaV3_6G048980' => 'csa', 'CSS0002511' => 'camsi', 'CSS0007556' => 'camsi', 'CSS0008532' => 'camsi', 'CSS0009709' => 'camsi', 'CSS0010486' => 'camsi', 'CSS0016768' => 'camsi', 'CSS0023512' => 'camsi', 'CSS0025341' => 'camsi', 'CSS0027999' => 'camsi', 'CSS0028944' => 'camsi', 'CSS0032292' => 'camsi', 'CSS0032464' => 'camsi', 'CSS0037153' => 'camsi', 'CSS0039256' => 'camsi', 'CSS0048392' => 'camsi', 'CSS0050458' => 'camsi', 'DCAR_004224' => 'dca', 'DCAR_006147' => 'dca', 'DCAR_006465' => 'dca', 'DCAR_008159' => 'dca', 'DCAR_012164' => 'dca', 'DCAR_019764' => 'dca', 'Dinv05418' => 'din', 'Dinv10839' => 'din', 'Dinv12521' => 'din', 'Dinv13900' => 'din', 'Dinv29426' => 'din', 'Duzib150G0263' => 'dzi', 'Duzib168G1178' => 'dzi', 'Duzib168G1924' => 'dzi', 'Duzib170G0299' => 'dzi', 'Duzib170G0813' => 'dzi', 'Duzib235G1128' => 'dzi', 'Duzib248G1060' => 'dzi', 'ECA232G1910' => 'eca', 'ECA233G4621' => 'eca', 'ECA238G1216' => 'eca', 'ECA238G1784' => 'eca', 'ECA248G1242' => 'eca', 'EL10Ac8g20071' => 'bvu', 'EL10Ac9g21086' => 'bvu', 'EL10Ac9g22407' => 'bvu', 'EL10Ac9g22412' => 'bvu', 'Eucgr.A01119' => 'egr', 'Eucgr.E04043' => 'egr', 'Eucgr.J00428' => 'egr', 'Eucgr.J00958' => 'egr', 'FAN11G3091' => 'fan', 'FAN11G3651' => 'fan', 'FAN16G2566' => 'fan', 'FAN21G3155' => 'fan', 'FAN21G3400' => 'fan', 'FAN21G3543' => 'fan', 'FAN25G0234' => 'fan', 'FAN25G1422' => 'fan', 'FAN25G3392' => 'fan', 'FvH4_3g01940' => 'fve', 'FvH4_3g29870' => 'fve', 'FvH4_3g33680' => 'fve', 'Glyma.09G004200' => 'gma', 'Glyma.11G151288' => 'gma', 'Glyma.11G189100' => 'gma', 'Glyma.12G072500' => 'gma', 'Glyma.12G085500' => 'gma', 'Glyma.12G181800' => 'gma', 'Glyma.12G193000' => 'gma', 'Glyma.13G309300' => 'gma', 'Glyma.13G319000' => 'gma', 'Glyma.17G012600' => 'gma', 'Gohir.A06G148600' => 'ghi', 'Gohir.A07G115800' => 'ghi', 'Gohir.A08G003600' => 'ghi', 'Gohir.A09G093300' => 'ghi', 'Gohir.A09G105400' => 'ghi', 'Gohir.A09G105500' => 'ghi', 'Gohir.D06G154600' => 'ghi', 'Gohir.D07G120200' => 'ghi', 'Gohir.D08G013900' => 'ghi', 'Gohir.D09G093100' => 'ghi', 'Gohir.D09G102200' => 'ghi', 'Gohir.D09G102300' => 'ghi', 'Gorai.001G129400' => 'gra', 'Gorai.004G008200' => 'gra', 'Gorai.006G109800' => 'gra', 'Gorai.006G119500' => 'gra', 'Gorai.006G121300' => 'gra', 'Gorai.010G180700' => 'gra', 'GSVIVG01012716001' => 'vvi', 'GSVIVG01025118001' => 'vvi', 'GSVIVG01030439001' => 'vvi', 'GSVIVG01031397001' => 'vvi', 'HanXRQChr01g0004201' => 'han', 'HanXRQChr02g0054941' => 'han', 'HanXRQChr05g0141811' => 'han', 'HanXRQChr07g0197751' => 'han', 'HanXRQChr11g0346691' => 'han', 'HanXRQChr13g0396971' => 'han', 'HanXRQChr14g0432951' => 'han', 'HanXRQChr14g0452001' => 'han', 'HanXRQChr15g0496681' => 'han', 'HanXRQChr17g0557491' => 'han', 'HanXRQChr17g0557501' => 'han', 'Haze_06809' => 'cav', 'Haze_12852' => 'cav', 'Haze_15850' => 'cav', 'Haze_23446' => 'cav', 'Haze_23942' => 'cav', 'Haze_23943' => 'cav', 'Hma1.2p1_0091F.1_g046450' => 'hma', 'Hma1.2p1_0128F.1_g059910' => 'hma', 'Hma1.2p1_0249F.1_g102260' => 'hma', 'Hma1.2p1_0453F.1_g156190' => 'hma', 'Hma1.2p1_0695F.1_g204380' => 'hma', 'Hma1.2p1_0749F.1_g212650' => 'hma', 'Hma1.2p1_2156F.1_g315420' => 'hma', 'Hma1.2p1_2686F.1_g326940' => 'hma', 'HPP92_006428' => 'vpl', 'HPP92_012069' => 'vpl', 'HPP92_014129' => 'vpl', 'HPP92_014133' => 'vpl', 'HPP92_017315' => 'vpl', 'HPP92_026445' => 'vpl', 'HPP92_026446' => 'vpl', 'Hund00774' => 'sun', 'Hund07682' => 'sun', 'Hund21413' => 'sun', 'Hund23462' => 'sun', 'Hund23463' => 'sun', 'Lalb_Chr03g0027911' => 'lal', 'Lalb_Chr13g0304271' => 'lal', 'Lalb_Chr19g0137471' => 'lal', 'Lalb_Chr22g0350651' => 'lal', 'Lalb_Chr24g0395151' => 'lal', 'Lj1A1231T40' => 'lonja', 'Lj1A221T48' => 'lonja', 'Lj1C924T12' => 'lonja', 'Lj2C993G6' => 'lonja', 'Lj3g0005790' => 'lja', 'Lj3g0015432' => 'lja', 'Lj3g0017722' => 'lja', 'Lj3g0018497' => 'lja', 'Lj4g0025071' => 'lja', 'Lsat_1_v5_gn_1_129680' => 'lsa', 'Lsat_1_v5_gn_2_25321' => 'lsa', 'Lsat_1_v5_gn_2_95461' => 'lsa', 'Lsat_1_v5_gn_4_159620' => 'lsa', 'Lsat_1_v5_gn_6_41301' => 'lsa', 'Lsat_1_v5_gn_6_74660' => 'lsa', 'Lsat_1_v5_gn_7_11520' => 'lsa', 'Lsat_1_v5_gn_9_67680' => 'lsa', 'Manes.04G008300' => 'mes', 'Manes.04G008400' => 'mes', 'Manes.04G026500' => 'mes', 'Manes.10G135300' => 'mes', 'Manes.11G157300' => 'mes', 'Manes.12G074000' => 'mes', 'Manes.16G006200' => 'mes', 'Manes.17G026400' => 'mes', 'Mapoly0024s0086' => 'mpo', 'Mapoly0024s0087' => 'mpo', 'Mapoly0071s0057' => 'mpo', 'Mapoly0204s0012' => 'mpo', 'MBI04_g37681_MAGBIO' => 'mbi', 'MBI05_g17779_MAGBIO' => 'mbi', 'MBI12_g31184_MAGBIO' => 'mbi', 'MBI17_g11083_MAGBIO' => 'mbi', 'MBI18_g03883_MAGBIO' => 'mbi', 'MBI18_g28940_MAGBIO' => 'mbi', 'MCO01G690' => 'mco', 'MD03G1109900' => 'mdo', 'MD03G1134800' => 'mdo', 'MD05G1348000' => 'mdo', 'MD10G1322400' => 'mdo', 'MD11G1123300' => 'mdo', 'MD11G1157600' => 'mdo', 'Medtr2g084875' => 'mtr', 'Medtr2g088130' => 'mtr', 'Medtr4g055310' => 'mtr', 'Medtr4g061070' => 'mtr', 'Medtr4g132250' => 'mtr', 'MELO3C004795.2' => 'cme', 'MELO3C004797.2' => 'cme', 'MELO3C007396.2' => 'cme', 'MELO3C019277.2' => 'cme', 'MELO3C021449.2' => 'cme', 'MELO3C025736.2' => 'cme', 'Migut.D02175' => 'egut', 'Migut.H01573' => 'egut', 'Migut.M01327' => 'egut', 'Migut.N02513' => 'egut', 'MSTRG.14638' => 'ama', 'MSTRG.18632' => 'ama', 'MSTRG.7203' => 'ama', 'Nitab4.5_0000533g0140' => 'nta', 'Nitab4.5_0000888g0150' => 'nta', 'Nitab4.5_0001453g0040' => 'nta', 'Nitab4.5_0002827g0090' => 'nta', 'Nitab4.5_0003082g0040' => 'nta', 'Nitab4.5_0007799g0040' => 'nta', 'Nitab4.5_0008983g0010' => 'nta', 'Nitab4.5_0009017g0020' => 'nta', 'Nn1g02132' => 'nnu', 'Nn1g03492' => 'nnu', 'Nn1g03493' => 'nnu', 'Nn1g03494' => 'nnu', 'Nn1g07164' => 'nnu', 'Nn1g07291' => 'nnu', 'Nn2g10655' => 'nnu', 'Nn2g11652' => 'nnu', 'Nn2g14008' => 'nnu', 'Nn3g17476' => 'nnu', 'Nn3g17477' => 'nnu', 'Nn4g22370' => 'nnu', 'Nn4g25255' => 'nnu', 'Nn5g27755' => 'nnu', 'Nn6g34260' => 'nnu', 'Nn6g35041' => 'nnu', 'Oeu005924.1' => 'oeu', 'Oeu008383.1' => 'oeu', 'Oeu014928.1' => 'oeu', 'Oeu019889.1' => 'oeu', 'Oeu022271.1' => 'oeu', 'Oeu025271.1' => 'oeu', 'Oeu036302.1' => 'oeu', 'Oeu044100.1' => 'oeu', 'Os01g0528300' => 'osa', 'Os03g0286200' => 'osa', 'Os04g0406600' => 'osa', 'Os07g0512000' => 'osa', 'Os07g0694600' => 'osa', 'Os08g0411000' => 'osa', 'Os09g0565700' => 'osa', 'Os09g0566050' => 'osa', 'Os10g0523700' => 'osa', 'Peaxi162Scf00002g00514' => 'pax', 'Peaxi162Scf00047g01817' => 'pax', 'Peaxi162Scf00114g00001' => 'pax', 'Peaxi162Scf00147g00613' => 'pax', 'Peaxi162Scf00389g00425' => 'pax', 'PGR042G1139' => 'pgr', 'PGR042G3273' => 'pgr', 'PGR102G2180' => 'pgr', 'PGR119G0234' => 'pgr', 'PGR119G0668' => 'pgr', 'PGSC0003DMG400007122' => 'stu', 'PGSC0003DMG400016478' => 'stu', 'PGSC0003DMG400025374' => 'stu', 'PGSC0003DMG400026536' => 'stu', 'Phvul.003G079600' => 'pvu', 'Phvul.005G115600' => 'pvu', 'Phvul.005G127100' => 'pvu', 'Phvul.006G149500' => 'pvu', 'Phvul.006G149600' => 'pvu', 'Phvul.011G071800' => 'pvu', 'Phvul.011G090400' => 'pvu', 'Potri.004G013400' => 'ptr', 'Potri.004G188100' => 'ptr', 'Potri.008G195500' => 'ptr', 'Potri.009G148800' => 'ptr', 'Potri.011G004700' => 'ptr', 'Pp3c17_22810' => 'ppa', 'Pp3c18_4480' => 'ppa', 'Pp3c19_13030' => 'ppa', 'Pp3c1_33620' => 'ppa', 'Pp3c2_9380' => 'ppa', 'PRCOL_00001023' => 'pco', 'Prupe.3G216300' => 'ppe', 'Prupe.4G019500' => 'ppe', 'Prupe.6G092500' => 'ppe', 'Prupe.6G119200' => 'ppe', 'Psat0s1945g0080' => 'psa', 'Psat0s4167g0040' => 'psa', 'Psat1g185800' => 'psa', 'Psat4g006440' => 'psa', 'Psat4g006480' => 'psa', 'Psat4g168120' => 'psa', 'Psat5g255680' => 'psa', 'Psat5g261760' => 'psa', 'Psat7g222120' => 'psa', 'PSO063G7252' => 'pso', 'PSO170G4778' => 'pso', 'PSO210G2249' => 'pso', 'PSO339G2411' => 'pso', 'PSO339G2457' => 'pso', 'PSO339G2854' => 'pso', 'PSO339G4288' => 'pso', 'PSO339G4615' => 'pso', 'PSO384G2796' => 'pso', 'PSO384G2940' => 'pso', 'PSO384G4227' => 'pso', 'PSO478G1425' => 'pso', 'PSO541G3863' => 'pso', 'PSO675G0507' => 'pso', 'PSO782G0338' => 'pso', 'PSO832G0644' => 'pso', 'QL01p013664' => 'qlo', 'QL01p036598' => 'qlo', 'QL05p072984' => 'qlo', 'QL08p005768' => 'qlo', 'QL08p032743' => 'qlo', 'QL93p0073_0439' => 'qlo', 'QL93p0073_0444' => 'qlo', 'RcHm_v2.0_Chr5g0002851' => 'rch', 'RcHm_v2.0_Chr5g0055201' => 'rch', 'RcHm_v2.0_Chr5g0061191' => 'rch', 'RcHm_v2.0_Chr7g0203231' => 'rch', 'Rhsim01G0208100' => 'rsi', 'Rhsim01G0208200' => 'rsi', 'Rhsim02G0106500' => 'rsi', 'Rhsim03G0107900' => 'rsi', 'Rhsim06G0163400' => 'rsi', 'Rhsim13G0105200' => 'rsi', 'Sabra04G0006300' => 'sbr', 'Sabra04G0127000' => 'sbr', 'Sabra08G0148700' => 'sbr', 'Sabra09G0117400' => 'sbr', 'SalBow1G3326' => 'sbo', 'SalBow3G3228' => 'sbo', 'SalBow6G1634' => 'sbo', 'SalBow6G3603' => 'sbo', 'SalBow6G5266' => 'sbo', 'SalBow7G2265' => 'sbo', 'SalBow8G0850' => 'sbo', 'SalBow8G2592' => 'sbo', 'Sc05g0009240' => 'sci', 'Sc12g0002300' => 'sci', 'Sc21g0000100' => 'sci', 'Sc21g0004720' => 'sci', 'Sed0002949' => 'sed', 'Sed0004114' => 'sed', 'Sed0004306' => 'sed', 'Sed0006172' => 'sed', 'Sed0008413' => 'sed', 'Sed0013809' => 'sed', 'Sed0019556' => 'sed', 'SEGI_03570' => 'sgi', 'SEGI_07859' => 'sgi', 'SEGI_15042' => 'sgi', 'SEGI_16263' => 'sgi', 'SEGI_16552' => 'sgi', 'SEGI_24331' => 'sgi', 'SEGI_27316' => 'sgi', 'SEGI_29521' => 'sgi', 'SEGI_41342' => 'sgi', 'SGA_v2.0_scaffold27G11617' => 'sas', 'SGA_v2.0_scaffold316G48428' => 'sas', 'SGA_v2.0_scaffold49G18261' => 'sas', 'SGA_v2.0_scaffold7G03831' => 'sas', 'SGA_v2.0_scaffold93G28359' => 'sas', 'SHI02210' => 'shi', 'SHI06028' => 'shi', 'SHI06321' => 'shi', 'SMO111G0012' => 'smo', 'SMO228G0080' => 'smo', 'SMO356G0756' => 'smo', 'Solyc02g080620.3' => 'sly', 'Solyc06g074530.1' => 'sly', 'Solyc11g066890.1' => 'sly', 'Solyc11g072520.3' => 'sly', 'Sopen02g025330' => 'spe', 'Sopen06g031000' => 'spe', 'Sopen09g008240' => 'spe', 'Sopen09g025210' => 'spe', 'Sopen11g026600' => 'spe', 'Sopen11g030170' => 'spe', 'Sp1g10420' => 'spa', 'Sp3g06570' => 'spa', 'Sp4g10660' => 'spa', 'Sp5g16460' => 'spa', 'Sp6g22710' => 'spa', 'TAR365G0112' => 'tar', 'TAR369G0717' => 'tar', 'TAR374G0976' => 'tar', 'TAR623G1128' => 'tar', 'TAR626G1937' => 'tar', 'TAR627G0123' => 'tar', 'TAR628G0305' => 'tar', 'TAR636G1176' => 'tar', 'TAR636G2442' => 'tar', 'THA.LOC104800556' => 'tha', 'THA.LOC104809501' => 'tha', 'THA.LOC104815126' => 'tha', 'THA.LOC104815732' => 'tha', 'THA.LOC104823528' => 'tha', 'Thecc.02G365600' => 'tca', 'Thecc.06G222300' => 'tca', 'Thecc.09G261800' => 'tca', 'Thecc.09G291400' => 'tca', 'Thhalv10003028m.g' => 'esa', 'Thhalv10007886m.g' => 'esa', 'Thhalv10016085m.g' => 'esa', 'Thhalv10016681m.g' => 'esa', 'Thhalv10020951m.g' => 'esa', 'TPR.G15598' => 'tpr', 'TPR.G29305' => 'tpr', 'TPR.G32395' => 'tpr', 'TPR.G36998' => 'tpr', 'TPR.G4227' => 'tpr', 'TWI18G1433' => 'twi', 'TWI31G0755' => 'twi', 'TWI38G0912' => 'twi', 'TWI75G1097' => 'twi', 'TWI75G1619' => 'twi', 'TWI79G1336' => 'twi', 'unitig_0.g943' => 'ugi', 'unitig_0.g944' => 'ugi', 'unitig_22.g6646' => 'ugi', 'unitig_37.g12681' => 'ugi', 'unitig_8.g3290' => 'ugi', 'vmacro03278' => 'vma', 'vmacro12197' => 'vma', 'vmacro14478' => 'vma', 'vmacro15787' => 'vma', 'vmacro15789' => 'vma', 'vmacro15790' => 'vma', 'vmacro15806' => 'vma', 'vmacro22907' => 'vma', 'vmacro22908' => 'vma', 'vmacro22909' => 'vma', 'vmacro23108' => 'vma', 'VMungo0540G0540' => 'vmu', 'VMungo0540G2468' => 'vmu', 'VMungo1080G0390' => 'vmu', 'VMungo1080G1165' => 'vmu', 'VMungo1127G0170' => 'vmu', 'VMungo1127G2099' => 'vmu', 'VMungo1215G3013' => 'vmu', 'Zm00001eb013110' => 'zma', 'Zm00001eb084260' => 'zma', 'Zm00001eb096110' => 'zma', 'Zm00001eb217510' => 'zma', 'Zm00001eb322550' => 'zma', 'Zm00001eb390770' => 'zma', 'Zm00001eb397170' => 'zma', 'Zm00001eb404610' => 'zma', 'Zm00001eb421790' => 'zma' ) $gf_id = 'HOM05D000911' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000911' ) $data_identifier = 'HOM05D000911' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 16, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 5, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 6, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 8, 'nnu' => (int) 16, 'oeu' => (int) 8, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 5, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 16, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421790' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000911', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27780' => 'bna', 'A03p35380' => 'bna', 'A04p21160' => 'bna', 'A05p40570' => 'bna', 'A06p26900' => 'bna', 'A08p33230' => 'bna', 'A09p65960' => 'bna', 'A10p18290' => 'bna', 'Aa31LG1G12990' => 'aar', 'Aa31LG1G2980' => 'aar', 'Aa31LG4G14320' => 'aar', 'Aa31LG7G11800' => 'aar', 'Aa31sc36G50' => 'aar', 'Aa31sc36G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3721' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5459' => 'aag', 'Actinidia03028' => 'ach', 'Actinidia03753' => 'ach', 'Actinidia04187' => 'ach', 'Actinidia05509' => 'ach', 'Actinidia24180' => 'ach', 'Actinidia26906' => 'ach', 'Actinidia37097' => 'ach', 'Actinidia38249' => 'ach', 'Ah.01g003470' => 'amhyb', 'Ah.01g004580' => 'amhyb', 'Ah.01g014850' => 'amhyb', 'Ah.01g016830' => 'amhyb', 'Ah.14g088000' => 'amhyb', 'AL1G22980' => 'aly', 'AL3G18990' => 'aly', 'AL4G22440' => 'aly', 'AL4G33180' => 'aly', 'AL5G22920' => 'aly', 'AL6G33660' => 'aly', 'AL8G20720' => 'aly', 'Aqoxy1G00935' => 'aox', 'Aqoxy1G02094' => 'aox', 'Aqoxy2G01239' => 'aox', 'Aqoxy4G01870' => 'aox', 'Aqoxy7G00450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.36ZVTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71EM27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5D6C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH3WRE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3NCM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RIM768' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YB5YRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z36GDV' => 'arhy', 'AT1G08250' => 'ath', 'AT1G11790' => 'ath', 'AT2G27820' => 'ath', 'AT3G07630' => 'ath', 'AT3G44720' => 'ath', 'AT5G22630' => 'ath', 'ATR0693G304' => 'atr', 'ATR0794G109' => 'atr', 'ATR0820G120' => 'atr', 'ATR1159G064' => 'atr', 'Atru.chr10.2239' => 'acertr', 'Atru.chr3.3371' => 'acertr', 'Atru.chr6.3202' => 'acertr', 'AUR62006499' => 'cqu', 'AUR62012718' => 'cqu', 'AUR62021938' => 'cqu', 'AUR62023932' => 'cqu', 'AUR62025034' => 'cqu', 'AUR62025035' => 'cqu', 'AUR62038307' => 'cqu', 'AUR62043466' => 'cqu', 'BcaB02g10748' => 'bca', 'BcaB03g13231' => 'bca', 'BcaB03g14689' => 'bca', 'BcaB05g22716' => 'bca', 'BcaB06g28172' => 'bca', 'BcaB08g36413' => 'bca', 'BcaC01g02186' => 'bca', 'BcaC01g04272' => 'bca', 'BcaC02g08080' => 'bca', 'BcaC02g08227' => 'bca', 'BcaC03g13901' => 'bca', 'BcaC04g19593' => 'bca', 'BcaC04g20874' => 'bca', 'BcaC05g29557' => 'bca', 'BcaC06g35505' => 'bca', 'BcaC07g41954' => 'bca', 'BcaC07g41955' => 'bca', 'BcaC07g41956' => 'bca', 'BcaC07g42519' => 'bca', 'BcaC07g42520' => 'bca', 'BcaC07g42523' => 'bca', 'BcaC07g42524' => 'bca', 'BcaC07g42525' => 'bca', 'BcaC08g47480' => 'bca', 'BcaC08g47481' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00530' => 'bna', 'BolC2t07178H' => 'bol', 'BolC3t16567H' => 'bol', 'BolC4t27234H' => 'bol', 'BolC5t29728H' => 'bol', 'BolC5t34622H' => 'bol', 'BolC6t40321H' => 'bol', 'BolC7t42028H' => 'bol', 'BolC8t49125H' => 'bol', 'BolC8t52538H' => 'bol', 'BolC8t52539H' => 'bol', 'BolC9t56681H' => 'bol', 'BolC9t58266H' => 'bol', 'BolSC21t60294H' => 'bol', 'BraA02t05670Z' => 'bra', 'BraA03t12716Z' => 'bra', 'BraA04t17685Z' => 'bra', 'BraA05t22788Z' => 'bra', 'BraA06t24032Z' => 'bra', 'BraA06t25625Z' => 'bra', 'BraA07t27930Z' => 'bra', 'BraA08t35242Z' => 'bra', 'BraA09t38609Z' => 'bra', 'BraA10t43905Z' => 'bra', 'C02p11060' => 'bna', 'C03p42990' => 'bna', 'C03p67310' => 'bna', 'C04p56990' => 'bna', 'C04p58660' => 'bna', 'C05p09890' => 'bna', 'C05p59680' => 'bna', 'C06p19830' => 'bna', 'C06p53040' => 'bna', 'C07p15230' => 'bna', 'C08p50070' => 'bna', 'C08p50090' => 'bna', 'C09p38330' => 'bna', 'C09p53940' => 'bna', 'CAN.G1014.1' => 'can', 'CAN.G644.30' => 'can', 'CAN.G84.47' => 'can', 'CAN.G919.8' => 'can', 'CANSAT54G0113' => 'cansat', 'CANSAT54G1286' => 'cansat', 'CANSAT64G1020' => 'cansat', 'CARHR008080' => 'chi', 'CARHR008090' => 'chi', 'CARHR012130' => 'chi', 'CARHR038390' => 'chi', 'CARHR082330' => 'chi', 'CARHR120520' => 'chi', 'CARHR151470' => 'chi', 'CARHR190950' => 'chi', 'Carub.0001s0760' => 'cru', 'Carub.0001s1146' => 'cru', 'Carub.0003s0721' => 'cru', 'Carub.0004s0858' => 'cru', 'Carub.0005s1040' => 'cru', 'Carub.0006s2035' => 'cru', 'Carub.0015s0005' => 'cru', 'Ca_01607_v3' => 'car', 'Ca_01677_v3' => 'car', 'Ca_06087_v3' => 'car', 'Ca_19238_v3' => 'car', 'Ca_19373_v3' => 'car', 'Ca_21079_v3' => 'car', 'CBR_g54016' => 'cbr', 'CBR_g54018' => 'cbr', 'CBR_g54020' => 'cbr', 'Cc01_g09780' => 'ccan', 'Cc01_g11680' => 'ccan', 'Cc02_g15610' => 'ccan', 'Cc05_g04350' => 'ccan', 'Cc09_g01580' => 'ccan', 'CDE01G0795' => 'cde', 'CDE02G2024' => 'cde', 'CDE02G2260' => 'cde', 'CDE02G4561' => 'cde', 'CDE05G2733' => 'cde', 'CDE05G3422' => 'cde', 'CDE06G2003' => 'cde', 'CDE08G0576' => 'cde', 'CDE09G0048' => 'cde', 'CDE11G0805' => 'cde', 'Cfa003644' => 'cfa', 'Cfa006290' => 'cfa', 'Cfa010080' => 'cfa', 'Cfa011376' => 'cfa', 'Cfa011576' => 'cfa', 'Cfa011577' => 'cfa', 'Cfa014389' => 'cfa', 'Ciclev10006044m.g' => 'ccl', 'Ciclev10006954m.g' => 'ccl', 'Ciclev10015131m.g' => 'ccl', 'Ciclev10015580m.g' => 'ccl', 'Ciclev10028359m.g' => 'ccl', 'Ciclev10028573m.g' => 'ccl', 'CiPaw.03G159300' => 'cil', 'CiPaw.04G115100' => 'cil', 'CiPaw.09G092800' => 'cil', 'CiPaw.10G071800' => 'cil', 'CiPaw.13G105800' => 'cil', 'CiPaw.13G141000' => 'cil', 'CiPaw.14G103400' => 'cil', 'ClCG01G012700' => 'cla', 'ClCG01G012720' => 'cla', 'ClCG01G021920' => 'cla', 'ClCG02G008870' => 'cla', 'ClCG02G020840' => 'cla', 'ClCG02G021930' => 'cla', 'COL.COLO4_19302' => 'col', 'COL.COLO4_25262' => 'col', 'COL.COLO4_31788' => 'col', 'Cpa.g.c34684' => 'cpa', 'Cpa.g.c36520.1' => 'cpa', 'Cpa.g.c45626' => 'cpa', 'Cpa.g.sc121.17' => 'cpa', 'Cpa.g.sc13.22' => 'cpa', 'Cpa.g.sc87.88' => 'cpa', 'Cre06.g261800' => 'cre', 'CsaV3_1G014500' => 'csa', 'CsaV3_1G014510' => 'csa', 'CsaV3_2G034880' => 'csa', 'CsaV3_6G014760' => 'csa', 'CsaV3_6G021500' => 'csa', 'CsaV3_6G048980' => 'csa', 'CSS0002511' => 'camsi', 'CSS0007556' => 'camsi', 'CSS0008532' => 'camsi', 'CSS0009709' => 'camsi', 'CSS0010486' => 'camsi', 'CSS0016768' => 'camsi', 'CSS0023512' => 'camsi', 'CSS0025341' => 'camsi', 'CSS0027999' => 'camsi', 'CSS0028944' => 'camsi', 'CSS0032292' => 'camsi', 'CSS0032464' => 'camsi', 'CSS0037153' => 'camsi', 'CSS0039256' => 'camsi', 'CSS0048392' => 'camsi', 'CSS0050458' => 'camsi', 'DCAR_004224' => 'dca', 'DCAR_006147' => 'dca', 'DCAR_006465' => 'dca', 'DCAR_008159' => 'dca', 'DCAR_012164' => 'dca', 'DCAR_019764' => 'dca', 'Dinv05418' => 'din', 'Dinv10839' => 'din', 'Dinv12521' => 'din', 'Dinv13900' => 'din', 'Dinv29426' => 'din', 'Duzib150G0263' => 'dzi', 'Duzib168G1178' => 'dzi', 'Duzib168G1924' => 'dzi', 'Duzib170G0299' => 'dzi', 'Duzib170G0813' => 'dzi', 'Duzib235G1128' => 'dzi', 'Duzib248G1060' => 'dzi', 'ECA232G1910' => 'eca', 'ECA233G4621' => 'eca', 'ECA238G1216' => 'eca', 'ECA238G1784' => 'eca', 'ECA248G1242' => 'eca', 'EL10Ac8g20071' => 'bvu', 'EL10Ac9g21086' => 'bvu', 'EL10Ac9g22407' => 'bvu', 'EL10Ac9g22412' => 'bvu', 'Eucgr.A01119' => 'egr', 'Eucgr.E04043' => 'egr', 'Eucgr.J00428' => 'egr', 'Eucgr.J00958' => 'egr', 'FAN11G3091' => 'fan', 'FAN11G3651' => 'fan', 'FAN16G2566' => 'fan', 'FAN21G3155' => 'fan', 'FAN21G3400' => 'fan', 'FAN21G3543' => 'fan', 'FAN25G0234' => 'fan', 'FAN25G1422' => 'fan', 'FAN25G3392' => 'fan', 'FvH4_3g01940' => 'fve', 'FvH4_3g29870' => 'fve', 'FvH4_3g33680' => 'fve', 'Glyma.09G004200' => 'gma', 'Glyma.11G151288' => 'gma', 'Glyma.11G189100' => 'gma', 'Glyma.12G072500' => 'gma', 'Glyma.12G085500' => 'gma', 'Glyma.12G181800' => 'gma', 'Glyma.12G193000' => 'gma', 'Glyma.13G309300' => 'gma', 'Glyma.13G319000' => 'gma', 'Glyma.17G012600' => 'gma', 'Gohir.A06G148600' => 'ghi', 'Gohir.A07G115800' => 'ghi', 'Gohir.A08G003600' => 'ghi', 'Gohir.A09G093300' => 'ghi', 'Gohir.A09G105400' => 'ghi', 'Gohir.A09G105500' => 'ghi', 'Gohir.D06G154600' => 'ghi', 'Gohir.D07G120200' => 'ghi', 'Gohir.D08G013900' => 'ghi', 'Gohir.D09G093100' => 'ghi', 'Gohir.D09G102200' => 'ghi', 'Gohir.D09G102300' => 'ghi', 'Gorai.001G129400' => 'gra', 'Gorai.004G008200' => 'gra', 'Gorai.006G109800' => 'gra', 'Gorai.006G119500' => 'gra', 'Gorai.006G121300' => 'gra', 'Gorai.010G180700' => 'gra', 'GSVIVG01012716001' => 'vvi', 'GSVIVG01025118001' => 'vvi', 'GSVIVG01030439001' => 'vvi', 'GSVIVG01031397001' => 'vvi', 'HanXRQChr01g0004201' => 'han', 'HanXRQChr02g0054941' => 'han', 'HanXRQChr05g0141811' => 'han', 'HanXRQChr07g0197751' => 'han', 'HanXRQChr11g0346691' => 'han', 'HanXRQChr13g0396971' => 'han', 'HanXRQChr14g0432951' => 'han', 'HanXRQChr14g0452001' => 'han', 'HanXRQChr15g0496681' => 'han', 'HanXRQChr17g0557491' => 'han', 'HanXRQChr17g0557501' => 'han', 'Haze_06809' => 'cav', 'Haze_12852' => 'cav', 'Haze_15850' => 'cav', 'Haze_23446' => 'cav', 'Haze_23942' => 'cav', 'Haze_23943' => 'cav', 'Hma1.2p1_0091F.1_g046450' => 'hma', 'Hma1.2p1_0128F.1_g059910' => 'hma', 'Hma1.2p1_0249F.1_g102260' => 'hma', 'Hma1.2p1_0453F.1_g156190' => 'hma', 'Hma1.2p1_0695F.1_g204380' => 'hma', 'Hma1.2p1_0749F.1_g212650' => 'hma', 'Hma1.2p1_2156F.1_g315420' => 'hma', 'Hma1.2p1_2686F.1_g326940' => 'hma', 'HPP92_006428' => 'vpl', 'HPP92_012069' => 'vpl', 'HPP92_014129' => 'vpl', 'HPP92_014133' => 'vpl', 'HPP92_017315' => 'vpl', 'HPP92_026445' => 'vpl', 'HPP92_026446' => 'vpl', 'Hund00774' => 'sun', 'Hund07682' => 'sun', 'Hund21413' => 'sun', 'Hund23462' => 'sun', 'Hund23463' => 'sun', 'Lalb_Chr03g0027911' => 'lal', 'Lalb_Chr13g0304271' => 'lal', 'Lalb_Chr19g0137471' => 'lal', 'Lalb_Chr22g0350651' => 'lal', 'Lalb_Chr24g0395151' => 'lal', 'Lj1A1231T40' => 'lonja', 'Lj1A221T48' => 'lonja', 'Lj1C924T12' => 'lonja', 'Lj2C993G6' => 'lonja', 'Lj3g0005790' => 'lja', 'Lj3g0015432' => 'lja', 'Lj3g0017722' => 'lja', 'Lj3g0018497' => 'lja', 'Lj4g0025071' => 'lja', 'Lsat_1_v5_gn_1_129680' => 'lsa', 'Lsat_1_v5_gn_2_25321' => 'lsa', 'Lsat_1_v5_gn_2_95461' => 'lsa', 'Lsat_1_v5_gn_4_159620' => 'lsa', 'Lsat_1_v5_gn_6_41301' => 'lsa', 'Lsat_1_v5_gn_6_74660' => 'lsa', 'Lsat_1_v5_gn_7_11520' => 'lsa', 'Lsat_1_v5_gn_9_67680' => 'lsa', 'Manes.04G008300' => 'mes', 'Manes.04G008400' => 'mes', 'Manes.04G026500' => 'mes', 'Manes.10G135300' => 'mes', 'Manes.11G157300' => 'mes', 'Manes.12G074000' => 'mes', 'Manes.16G006200' => 'mes', 'Manes.17G026400' => 'mes', 'Mapoly0024s0086' => 'mpo', 'Mapoly0024s0087' => 'mpo', 'Mapoly0071s0057' => 'mpo', 'Mapoly0204s0012' => 'mpo', 'MBI04_g37681_MAGBIO' => 'mbi', 'MBI05_g17779_MAGBIO' => 'mbi', 'MBI12_g31184_MAGBIO' => 'mbi', 'MBI17_g11083_MAGBIO' => 'mbi', 'MBI18_g03883_MAGBIO' => 'mbi', 'MBI18_g28940_MAGBIO' => 'mbi', 'MCO01G690' => 'mco', 'MD03G1109900' => 'mdo', 'MD03G1134800' => 'mdo', 'MD05G1348000' => 'mdo', 'MD10G1322400' => 'mdo', 'MD11G1123300' => 'mdo', 'MD11G1157600' => 'mdo', 'Medtr2g084875' => 'mtr', 'Medtr2g088130' => 'mtr', 'Medtr4g055310' => 'mtr', 'Medtr4g061070' => 'mtr', 'Medtr4g132250' => 'mtr', 'MELO3C004795.2' => 'cme', 'MELO3C004797.2' => 'cme', 'MELO3C007396.2' => 'cme', 'MELO3C019277.2' => 'cme', 'MELO3C021449.2' => 'cme', 'MELO3C025736.2' => 'cme', 'Migut.D02175' => 'egut', 'Migut.H01573' => 'egut', 'Migut.M01327' => 'egut', 'Migut.N02513' => 'egut', 'MSTRG.14638' => 'ama', 'MSTRG.18632' => 'ama', 'MSTRG.7203' => 'ama', 'Nitab4.5_0000533g0140' => 'nta', 'Nitab4.5_0000888g0150' => 'nta', 'Nitab4.5_0001453g0040' => 'nta', 'Nitab4.5_0002827g0090' => 'nta', 'Nitab4.5_0003082g0040' => 'nta', 'Nitab4.5_0007799g0040' => 'nta', 'Nitab4.5_0008983g0010' => 'nta', 'Nitab4.5_0009017g0020' => 'nta', 'Nn1g02132' => 'nnu', 'Nn1g03492' => 'nnu', 'Nn1g03493' => 'nnu', 'Nn1g03494' => 'nnu', 'Nn1g07164' => 'nnu', 'Nn1g07291' => 'nnu', 'Nn2g10655' => 'nnu', 'Nn2g11652' => 'nnu', 'Nn2g14008' => 'nnu', 'Nn3g17476' => 'nnu', 'Nn3g17477' => 'nnu', 'Nn4g22370' => 'nnu', 'Nn4g25255' => 'nnu', 'Nn5g27755' => 'nnu', 'Nn6g34260' => 'nnu', 'Nn6g35041' => 'nnu', 'Oeu005924.1' => 'oeu', 'Oeu008383.1' => 'oeu', 'Oeu014928.1' => 'oeu', 'Oeu019889.1' => 'oeu', 'Oeu022271.1' => 'oeu', 'Oeu025271.1' => 'oeu', 'Oeu036302.1' => 'oeu', 'Oeu044100.1' => 'oeu', 'Os01g0528300' => 'osa', 'Os03g0286200' => 'osa', 'Os04g0406600' => 'osa', 'Os07g0512000' => 'osa', 'Os07g0694600' => 'osa', 'Os08g0411000' => 'osa', 'Os09g0565700' => 'osa', 'Os09g0566050' => 'osa', 'Os10g0523700' => 'osa', 'Peaxi162Scf00002g00514' => 'pax', 'Peaxi162Scf00047g01817' => 'pax', 'Peaxi162Scf00114g00001' => 'pax', 'Peaxi162Scf00147g00613' => 'pax', 'Peaxi162Scf00389g00425' => 'pax', 'PGR042G1139' => 'pgr', 'PGR042G3273' => 'pgr', 'PGR102G2180' => 'pgr', 'PGR119G0234' => 'pgr', 'PGR119G0668' => 'pgr', 'PGSC0003DMG400007122' => 'stu', 'PGSC0003DMG400016478' => 'stu', 'PGSC0003DMG400025374' => 'stu', 'PGSC0003DMG400026536' => 'stu', 'Phvul.003G079600' => 'pvu', 'Phvul.005G115600' => 'pvu', 'Phvul.005G127100' => 'pvu', 'Phvul.006G149500' => 'pvu', 'Phvul.006G149600' => 'pvu', 'Phvul.011G071800' => 'pvu', 'Phvul.011G090400' => 'pvu', 'Potri.004G013400' => 'ptr', 'Potri.004G188100' => 'ptr', 'Potri.008G195500' => 'ptr', 'Potri.009G148800' => 'ptr', 'Potri.011G004700' => 'ptr', 'Pp3c17_22810' => 'ppa', 'Pp3c18_4480' => 'ppa', 'Pp3c19_13030' => 'ppa', 'Pp3c1_33620' => 'ppa', 'Pp3c2_9380' => 'ppa', 'PRCOL_00001023' => 'pco', 'Prupe.3G216300' => 'ppe', 'Prupe.4G019500' => 'ppe', 'Prupe.6G092500' => 'ppe', 'Prupe.6G119200' => 'ppe', 'Psat0s1945g0080' => 'psa', 'Psat0s4167g0040' => 'psa', 'Psat1g185800' => 'psa', 'Psat4g006440' => 'psa', 'Psat4g006480' => 'psa', 'Psat4g168120' => 'psa', 'Psat5g255680' => 'psa', 'Psat5g261760' => 'psa', 'Psat7g222120' => 'psa', 'PSO063G7252' => 'pso', 'PSO170G4778' => 'pso', 'PSO210G2249' => 'pso', 'PSO339G2411' => 'pso', 'PSO339G2457' => 'pso', 'PSO339G2854' => 'pso', 'PSO339G4288' => 'pso', 'PSO339G4615' => 'pso', 'PSO384G2796' => 'pso', 'PSO384G2940' => 'pso', 'PSO384G4227' => 'pso', 'PSO478G1425' => 'pso', 'PSO541G3863' => 'pso', 'PSO675G0507' => 'pso', 'PSO782G0338' => 'pso', 'PSO832G0644' => 'pso', 'QL01p013664' => 'qlo', 'QL01p036598' => 'qlo', 'QL05p072984' => 'qlo', 'QL08p005768' => 'qlo', 'QL08p032743' => 'qlo', 'QL93p0073_0439' => 'qlo', 'QL93p0073_0444' => 'qlo', 'RcHm_v2.0_Chr5g0002851' => 'rch', 'RcHm_v2.0_Chr5g0055201' => 'rch', 'RcHm_v2.0_Chr5g0061191' => 'rch', 'RcHm_v2.0_Chr7g0203231' => 'rch', 'Rhsim01G0208100' => 'rsi', 'Rhsim01G0208200' => 'rsi', 'Rhsim02G0106500' => 'rsi', 'Rhsim03G0107900' => 'rsi', 'Rhsim06G0163400' => 'rsi', 'Rhsim13G0105200' => 'rsi', 'Sabra04G0006300' => 'sbr', 'Sabra04G0127000' => 'sbr', 'Sabra08G0148700' => 'sbr', 'Sabra09G0117400' => 'sbr', 'SalBow1G3326' => 'sbo', 'SalBow3G3228' => 'sbo', 'SalBow6G1634' => 'sbo', 'SalBow6G3603' => 'sbo', 'SalBow6G5266' => 'sbo', 'SalBow7G2265' => 'sbo', 'SalBow8G0850' => 'sbo', 'SalBow8G2592' => 'sbo', 'Sc05g0009240' => 'sci', 'Sc12g0002300' => 'sci', 'Sc21g0000100' => 'sci', 'Sc21g0004720' => 'sci', 'Sed0002949' => 'sed', 'Sed0004114' => 'sed', 'Sed0004306' => 'sed', 'Sed0006172' => 'sed', 'Sed0008413' => 'sed', 'Sed0013809' => 'sed', 'Sed0019556' => 'sed', 'SEGI_03570' => 'sgi', 'SEGI_07859' => 'sgi', 'SEGI_15042' => 'sgi', 'SEGI_16263' => 'sgi', 'SEGI_16552' => 'sgi', 'SEGI_24331' => 'sgi', 'SEGI_27316' => 'sgi', 'SEGI_29521' => 'sgi', 'SEGI_41342' => 'sgi', 'SGA_v2.0_scaffold27G11617' => 'sas', 'SGA_v2.0_scaffold316G48428' => 'sas', 'SGA_v2.0_scaffold49G18261' => 'sas', 'SGA_v2.0_scaffold7G03831' => 'sas', 'SGA_v2.0_scaffold93G28359' => 'sas', 'SHI02210' => 'shi', 'SHI06028' => 'shi', 'SHI06321' => 'shi', 'SMO111G0012' => 'smo', 'SMO228G0080' => 'smo', 'SMO356G0756' => 'smo', 'Solyc02g080620.3' => 'sly', 'Solyc06g074530.1' => 'sly', 'Solyc11g066890.1' => 'sly', 'Solyc11g072520.3' => 'sly', 'Sopen02g025330' => 'spe', 'Sopen06g031000' => 'spe', 'Sopen09g008240' => 'spe', 'Sopen09g025210' => 'spe', 'Sopen11g026600' => 'spe', 'Sopen11g030170' => 'spe', 'Sp1g10420' => 'spa', 'Sp3g06570' => 'spa', 'Sp4g10660' => 'spa', 'Sp5g16460' => 'spa', 'Sp6g22710' => 'spa', 'TAR365G0112' => 'tar', 'TAR369G0717' => 'tar', 'TAR374G0976' => 'tar', 'TAR623G1128' => 'tar', 'TAR626G1937' => 'tar', 'TAR627G0123' => 'tar', 'TAR628G0305' => 'tar', 'TAR636G1176' => 'tar', 'TAR636G2442' => 'tar', 'THA.LOC104800556' => 'tha', 'THA.LOC104809501' => 'tha', 'THA.LOC104815126' => 'tha', 'THA.LOC104815732' => 'tha', 'THA.LOC104823528' => 'tha', 'Thecc.02G365600' => 'tca', 'Thecc.06G222300' => 'tca', 'Thecc.09G261800' => 'tca', 'Thecc.09G291400' => 'tca', 'Thhalv10003028m.g' => 'esa', 'Thhalv10007886m.g' => 'esa', 'Thhalv10016085m.g' => 'esa', 'Thhalv10016681m.g' => 'esa', 'Thhalv10020951m.g' => 'esa', 'TPR.G15598' => 'tpr', 'TPR.G29305' => 'tpr', 'TPR.G32395' => 'tpr', 'TPR.G36998' => 'tpr', 'TPR.G4227' => 'tpr', 'TWI18G1433' => 'twi', 'TWI31G0755' => 'twi', 'TWI38G0912' => 'twi', 'TWI75G1097' => 'twi', 'TWI75G1619' => 'twi', 'TWI79G1336' => 'twi', 'unitig_0.g943' => 'ugi', 'unitig_0.g944' => 'ugi', 'unitig_22.g6646' => 'ugi', 'unitig_37.g12681' => 'ugi', 'unitig_8.g3290' => 'ugi', 'vmacro03278' => 'vma', 'vmacro12197' => 'vma', 'vmacro14478' => 'vma', 'vmacro15787' => 'vma', 'vmacro15789' => 'vma', 'vmacro15790' => 'vma', 'vmacro15806' => 'vma', 'vmacro22907' => 'vma', 'vmacro22908' => 'vma', 'vmacro22909' => 'vma', 'vmacro23108' => 'vma', 'VMungo0540G0540' => 'vmu', 'VMungo0540G2468' => 'vmu', 'VMungo1080G0390' => 'vmu', 'VMungo1080G1165' => 'vmu', 'VMungo1127G0170' => 'vmu', 'VMungo1127G2099' => 'vmu', 'VMungo1215G3013' => 'vmu', 'Zm00001eb013110' => 'zma', 'Zm00001eb084260' => 'zma', 'Zm00001eb096110' => 'zma', 'Zm00001eb217510' => 'zma', 'Zm00001eb322550' => 'zma', 'Zm00001eb390770' => 'zma', 'Zm00001eb397170' => 'zma', 'Zm00001eb404610' => 'zma', 'Zm00001eb421790' => 'zma' ), 'gf_id' => 'HOM05D000911', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000911' ), 'data_identifier' => 'HOM05D000911', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000911', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27780' => 'bna', 'A03p35380' => 'bna', 'A04p21160' => 'bna', 'A05p40570' => 'bna', 'A06p26900' => 'bna', 'A08p33230' => 'bna', 'A09p65960' => 'bna', 'A10p18290' => 'bna', 'Aa31LG1G12990' => 'aar', 'Aa31LG1G2980' => 'aar', 'Aa31LG4G14320' => 'aar', 'Aa31LG7G11800' => 'aar', 'Aa31sc36G50' => 'aar', 'Aa31sc36G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3721' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5459' => 'aag', 'Actinidia03028' => 'ach', 'Actinidia03753' => 'ach', 'Actinidia04187' => 'ach', 'Actinidia05509' => 'ach', 'Actinidia24180' => 'ach', 'Actinidia26906' => 'ach', 'Actinidia37097' => 'ach', 'Actinidia38249' => 'ach', 'Ah.01g003470' => 'amhyb', 'Ah.01g004580' => 'amhyb', 'Ah.01g014850' => 'amhyb', 'Ah.01g016830' => 'amhyb', 'Ah.14g088000' => 'amhyb', 'AL1G22980' => 'aly', 'AL3G18990' => 'aly', 'AL4G22440' => 'aly', 'AL4G33180' => 'aly', 'AL5G22920' => 'aly', 'AL6G33660' => 'aly', 'AL8G20720' => 'aly', 'Aqoxy1G00935' => 'aox', 'Aqoxy1G02094' => 'aox', 'Aqoxy2G01239' => 'aox', 'Aqoxy4G01870' => 'aox', 'Aqoxy7G00450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.36ZVTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71EM27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5D6C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH3WRE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3NCM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RIM768' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YB5YRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z36GDV' => 'arhy', 'AT1G08250' => 'ath', 'AT1G11790' => 'ath', 'AT2G27820' => 'ath', 'AT3G07630' => 'ath', 'AT3G44720' => 'ath', 'AT5G22630' => 'ath', 'ATR0693G304' => 'atr', 'ATR0794G109' => 'atr', 'ATR0820G120' => 'atr', 'ATR1159G064' => 'atr', 'Atru.chr10.2239' => 'acertr', 'Atru.chr3.3371' => 'acertr', 'Atru.chr6.3202' => 'acertr', 'AUR62006499' => 'cqu', 'AUR62012718' => 'cqu', 'AUR62021938' => 'cqu', 'AUR62023932' => 'cqu', 'AUR62025034' => 'cqu', 'AUR62025035' => 'cqu', 'AUR62038307' => 'cqu', 'AUR62043466' => 'cqu', 'BcaB02g10748' => 'bca', 'BcaB03g13231' => 'bca', 'BcaB03g14689' => 'bca', 'BcaB05g22716' => 'bca', 'BcaB06g28172' => 'bca', 'BcaB08g36413' => 'bca', 'BcaC01g02186' => 'bca', 'BcaC01g04272' => 'bca', 'BcaC02g08080' => 'bca', 'BcaC02g08227' => 'bca', 'BcaC03g13901' => 'bca', 'BcaC04g19593' => 'bca', 'BcaC04g20874' => 'bca', 'BcaC05g29557' => 'bca', 'BcaC06g35505' => 'bca', 'BcaC07g41954' => 'bca', 'BcaC07g41955' => 'bca', 'BcaC07g41956' => 'bca', 'BcaC07g42519' => 'bca', 'BcaC07g42520' => 'bca', 'BcaC07g42523' => 'bca', 'BcaC07g42524' => 'bca', 'BcaC07g42525' => 'bca', 'BcaC08g47480' => 'bca', 'BcaC08g47481' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00530' => 'bna', 'BolC2t07178H' => 'bol', 'BolC3t16567H' => 'bol', 'BolC4t27234H' => 'bol', 'BolC5t29728H' => 'bol', 'BolC5t34622H' => 'bol', 'BolC6t40321H' => 'bol', 'BolC7t42028H' => 'bol', 'BolC8t49125H' => 'bol', 'BolC8t52538H' => 'bol', 'BolC8t52539H' => 'bol', 'BolC9t56681H' => 'bol', 'BolC9t58266H' => 'bol', 'BolSC21t60294H' => 'bol', 'BraA02t05670Z' => 'bra', 'BraA03t12716Z' => 'bra', 'BraA04t17685Z' => 'bra', 'BraA05t22788Z' => 'bra', 'BraA06t24032Z' => 'bra', 'BraA06t25625Z' => 'bra', 'BraA07t27930Z' => 'bra', 'BraA08t35242Z' => 'bra', 'BraA09t38609Z' => 'bra', 'BraA10t43905Z' => 'bra', 'C02p11060' => 'bna', 'C03p42990' => 'bna', 'C03p67310' => 'bna', 'C04p56990' => 'bna', 'C04p58660' => 'bna', 'C05p09890' => 'bna', 'C05p59680' => 'bna', 'C06p19830' => 'bna', 'C06p53040' => 'bna', 'C07p15230' => 'bna', 'C08p50070' => 'bna', 'C08p50090' => 'bna', 'C09p38330' => 'bna', 'C09p53940' => 'bna', 'CAN.G1014.1' => 'can', 'CAN.G644.30' => 'can', 'CAN.G84.47' => 'can', 'CAN.G919.8' => 'can', 'CANSAT54G0113' => 'cansat', 'CANSAT54G1286' => 'cansat', 'CANSAT64G1020' => 'cansat', 'CARHR008080' => 'chi', 'CARHR008090' => 'chi', 'CARHR012130' => 'chi', 'CARHR038390' => 'chi', 'CARHR082330' => 'chi', 'CARHR120520' => 'chi', 'CARHR151470' => 'chi', 'CARHR190950' => 'chi', 'Carub.0001s0760' => 'cru', 'Carub.0001s1146' => 'cru', 'Carub.0003s0721' => 'cru', 'Carub.0004s0858' => 'cru', 'Carub.0005s1040' => 'cru', 'Carub.0006s2035' => 'cru', 'Carub.0015s0005' => 'cru', 'Ca_01607_v3' => 'car', 'Ca_01677_v3' => 'car', 'Ca_06087_v3' => 'car', 'Ca_19238_v3' => 'car', 'Ca_19373_v3' => 'car', 'Ca_21079_v3' => 'car', 'CBR_g54016' => 'cbr', 'CBR_g54018' => 'cbr', 'CBR_g54020' => 'cbr', 'Cc01_g09780' => 'ccan', 'Cc01_g11680' => 'ccan', 'Cc02_g15610' => 'ccan', 'Cc05_g04350' => 'ccan', 'Cc09_g01580' => 'ccan', 'CDE01G0795' => 'cde', 'CDE02G2024' => 'cde', 'CDE02G2260' => 'cde', 'CDE02G4561' => 'cde', 'CDE05G2733' => 'cde', 'CDE05G3422' => 'cde', 'CDE06G2003' => 'cde', 'CDE08G0576' => 'cde', 'CDE09G0048' => 'cde', 'CDE11G0805' => 'cde', 'Cfa003644' => 'cfa', 'Cfa006290' => 'cfa', 'Cfa010080' => 'cfa', 'Cfa011376' => 'cfa', 'Cfa011576' => 'cfa', 'Cfa011577' => 'cfa', 'Cfa014389' => 'cfa', 'Ciclev10006044m.g' => 'ccl', 'Ciclev10006954m.g' => 'ccl', 'Ciclev10015131m.g' => 'ccl', 'Ciclev10015580m.g' => 'ccl', 'Ciclev10028359m.g' => 'ccl', 'Ciclev10028573m.g' => 'ccl', 'CiPaw.03G159300' => 'cil', 'CiPaw.04G115100' => 'cil', 'CiPaw.09G092800' => 'cil', 'CiPaw.10G071800' => 'cil', 'CiPaw.13G105800' => 'cil', 'CiPaw.13G141000' => 'cil', 'CiPaw.14G103400' => 'cil', 'ClCG01G012700' => 'cla', 'ClCG01G012720' => 'cla', 'ClCG01G021920' => 'cla', 'ClCG02G008870' => 'cla', 'ClCG02G020840' => 'cla', 'ClCG02G021930' => 'cla', 'COL.COLO4_19302' => 'col', 'COL.COLO4_25262' => 'col', 'COL.COLO4_31788' => 'col', 'Cpa.g.c34684' => 'cpa', 'Cpa.g.c36520.1' => 'cpa', 'Cpa.g.c45626' => 'cpa', 'Cpa.g.sc121.17' => 'cpa', 'Cpa.g.sc13.22' => 'cpa', 'Cpa.g.sc87.88' => 'cpa', 'Cre06.g261800' => 'cre', 'CsaV3_1G014500' => 'csa', 'CsaV3_1G014510' => 'csa', 'CsaV3_2G034880' => 'csa', 'CsaV3_6G014760' => 'csa', 'CsaV3_6G021500' => 'csa', 'CsaV3_6G048980' => 'csa', 'CSS0002511' => 'camsi', 'CSS0007556' => 'camsi', 'CSS0008532' => 'camsi', 'CSS0009709' => 'camsi', 'CSS0010486' => 'camsi', 'CSS0016768' => 'camsi', 'CSS0023512' => 'camsi', 'CSS0025341' => 'camsi', 'CSS0027999' => 'camsi', 'CSS0028944' => 'camsi', 'CSS0032292' => 'camsi', 'CSS0032464' => 'camsi', 'CSS0037153' => 'camsi', 'CSS0039256' => 'camsi', 'CSS0048392' => 'camsi', 'CSS0050458' => 'camsi', 'DCAR_004224' => 'dca', 'DCAR_006147' => 'dca', 'DCAR_006465' => 'dca', 'DCAR_008159' => 'dca', 'DCAR_012164' => 'dca', 'DCAR_019764' => 'dca', 'Dinv05418' => 'din', 'Dinv10839' => 'din', 'Dinv12521' => 'din', 'Dinv13900' => 'din', 'Dinv29426' => 'din', 'Duzib150G0263' => 'dzi', 'Duzib168G1178' => 'dzi', 'Duzib168G1924' => 'dzi', 'Duzib170G0299' => 'dzi', 'Duzib170G0813' => 'dzi', 'Duzib235G1128' => 'dzi', 'Duzib248G1060' => 'dzi', 'ECA232G1910' => 'eca', 'ECA233G4621' => 'eca', 'ECA238G1216' => 'eca', 'ECA238G1784' => 'eca', 'ECA248G1242' => 'eca', 'EL10Ac8g20071' => 'bvu', 'EL10Ac9g21086' => 'bvu', 'EL10Ac9g22407' => 'bvu', 'EL10Ac9g22412' => 'bvu', 'Eucgr.A01119' => 'egr', 'Eucgr.E04043' => 'egr', 'Eucgr.J00428' => 'egr', 'Eucgr.J00958' => 'egr', 'FAN11G3091' => 'fan', 'FAN11G3651' => 'fan', 'FAN16G2566' => 'fan', 'FAN21G3155' => 'fan', 'FAN21G3400' => 'fan', 'FAN21G3543' => 'fan', 'FAN25G0234' => 'fan', 'FAN25G1422' => 'fan', 'FAN25G3392' => 'fan', 'FvH4_3g01940' => 'fve', 'FvH4_3g29870' => 'fve', 'FvH4_3g33680' => 'fve', 'Glyma.09G004200' => 'gma', 'Glyma.11G151288' => 'gma', 'Glyma.11G189100' => 'gma', 'Glyma.12G072500' => 'gma', 'Glyma.12G085500' => 'gma', 'Glyma.12G181800' => 'gma', 'Glyma.12G193000' => 'gma', 'Glyma.13G309300' => 'gma', 'Glyma.13G319000' => 'gma', 'Glyma.17G012600' => 'gma', 'Gohir.A06G148600' => 'ghi', 'Gohir.A07G115800' => 'ghi', 'Gohir.A08G003600' => 'ghi', 'Gohir.A09G093300' => 'ghi', 'Gohir.A09G105400' => 'ghi', 'Gohir.A09G105500' => 'ghi', 'Gohir.D06G154600' => 'ghi', 'Gohir.D07G120200' => 'ghi', 'Gohir.D08G013900' => 'ghi', 'Gohir.D09G093100' => 'ghi', 'Gohir.D09G102200' => 'ghi', 'Gohir.D09G102300' => 'ghi', 'Gorai.001G129400' => 'gra', 'Gorai.004G008200' => 'gra', 'Gorai.006G109800' => 'gra', 'Gorai.006G119500' => 'gra', 'Gorai.006G121300' => 'gra', 'Gorai.010G180700' => 'gra', 'GSVIVG01012716001' => 'vvi', 'GSVIVG01025118001' => 'vvi', 'GSVIVG01030439001' => 'vvi', 'GSVIVG01031397001' => 'vvi', 'HanXRQChr01g0004201' => 'han', 'HanXRQChr02g0054941' => 'han', 'HanXRQChr05g0141811' => 'han', 'HanXRQChr07g0197751' => 'han', 'HanXRQChr11g0346691' => 'han', 'HanXRQChr13g0396971' => 'han', 'HanXRQChr14g0432951' => 'han', 'HanXRQChr14g0452001' => 'han', 'HanXRQChr15g0496681' => 'han', 'HanXRQChr17g0557491' => 'han', 'HanXRQChr17g0557501' => 'han', 'Haze_06809' => 'cav', 'Haze_12852' => 'cav', 'Haze_15850' => 'cav', 'Haze_23446' => 'cav', 'Haze_23942' => 'cav', 'Haze_23943' => 'cav', 'Hma1.2p1_0091F.1_g046450' => 'hma', 'Hma1.2p1_0128F.1_g059910' => 'hma', 'Hma1.2p1_0249F.1_g102260' => 'hma', 'Hma1.2p1_0453F.1_g156190' => 'hma', 'Hma1.2p1_0695F.1_g204380' => 'hma', 'Hma1.2p1_0749F.1_g212650' => 'hma', 'Hma1.2p1_2156F.1_g315420' => 'hma', 'Hma1.2p1_2686F.1_g326940' => 'hma', 'HPP92_006428' => 'vpl', 'HPP92_012069' => 'vpl', 'HPP92_014129' => 'vpl', 'HPP92_014133' => 'vpl', 'HPP92_017315' => 'vpl', 'HPP92_026445' => 'vpl', 'HPP92_026446' => 'vpl', 'Hund00774' => 'sun', 'Hund07682' => 'sun', 'Hund21413' => 'sun', 'Hund23462' => 'sun', 'Hund23463' => 'sun', 'Lalb_Chr03g0027911' => 'lal', 'Lalb_Chr13g0304271' => 'lal', 'Lalb_Chr19g0137471' => 'lal', 'Lalb_Chr22g0350651' => 'lal', 'Lalb_Chr24g0395151' => 'lal', 'Lj1A1231T40' => 'lonja', 'Lj1A221T48' => 'lonja', 'Lj1C924T12' => 'lonja', 'Lj2C993G6' => 'lonja', 'Lj3g0005790' => 'lja', 'Lj3g0015432' => 'lja', 'Lj3g0017722' => 'lja', 'Lj3g0018497' => 'lja', 'Lj4g0025071' => 'lja', 'Lsat_1_v5_gn_1_129680' => 'lsa', 'Lsat_1_v5_gn_2_25321' => 'lsa', 'Lsat_1_v5_gn_2_95461' => 'lsa', 'Lsat_1_v5_gn_4_159620' => 'lsa', 'Lsat_1_v5_gn_6_41301' => 'lsa', 'Lsat_1_v5_gn_6_74660' => 'lsa', 'Lsat_1_v5_gn_7_11520' => 'lsa', 'Lsat_1_v5_gn_9_67680' => 'lsa', 'Manes.04G008300' => 'mes', 'Manes.04G008400' => 'mes', 'Manes.04G026500' => 'mes', 'Manes.10G135300' => 'mes', 'Manes.11G157300' => 'mes', 'Manes.12G074000' => 'mes', 'Manes.16G006200' => 'mes', 'Manes.17G026400' => 'mes', 'Mapoly0024s0086' => 'mpo', 'Mapoly0024s0087' => 'mpo', 'Mapoly0071s0057' => 'mpo', 'Mapoly0204s0012' => 'mpo', 'MBI04_g37681_MAGBIO' => 'mbi', 'MBI05_g17779_MAGBIO' => 'mbi', 'MBI12_g31184_MAGBIO' => 'mbi', 'MBI17_g11083_MAGBIO' => 'mbi', 'MBI18_g03883_MAGBIO' => 'mbi', 'MBI18_g28940_MAGBIO' => 'mbi', 'MCO01G690' => 'mco', 'MD03G1109900' => 'mdo', 'MD03G1134800' => 'mdo', 'MD05G1348000' => 'mdo', 'MD10G1322400' => 'mdo', 'MD11G1123300' => 'mdo', 'MD11G1157600' => 'mdo', 'Medtr2g084875' => 'mtr', 'Medtr2g088130' => 'mtr', 'Medtr4g055310' => 'mtr', 'Medtr4g061070' => 'mtr', 'Medtr4g132250' => 'mtr', 'MELO3C004795.2' => 'cme', 'MELO3C004797.2' => 'cme', 'MELO3C007396.2' => 'cme', 'MELO3C019277.2' => 'cme', 'MELO3C021449.2' => 'cme', 'MELO3C025736.2' => 'cme', 'Migut.D02175' => 'egut', 'Migut.H01573' => 'egut', 'Migut.M01327' => 'egut', 'Migut.N02513' => 'egut', 'MSTRG.14638' => 'ama', 'MSTRG.18632' => 'ama', 'MSTRG.7203' => 'ama', 'Nitab4.5_0000533g0140' => 'nta', 'Nitab4.5_0000888g0150' => 'nta', 'Nitab4.5_0001453g0040' => 'nta', 'Nitab4.5_0002827g0090' => 'nta', 'Nitab4.5_0003082g0040' => 'nta', 'Nitab4.5_0007799g0040' => 'nta', 'Nitab4.5_0008983g0010' => 'nta', 'Nitab4.5_0009017g0020' => 'nta', 'Nn1g02132' => 'nnu', 'Nn1g03492' => 'nnu', 'Nn1g03493' => 'nnu', 'Nn1g03494' => 'nnu', 'Nn1g07164' => 'nnu', 'Nn1g07291' => 'nnu', 'Nn2g10655' => 'nnu', 'Nn2g11652' => 'nnu', 'Nn2g14008' => 'nnu', 'Nn3g17476' => 'nnu', 'Nn3g17477' => 'nnu', 'Nn4g22370' => 'nnu', 'Nn4g25255' => 'nnu', 'Nn5g27755' => 'nnu', 'Nn6g34260' => 'nnu', 'Nn6g35041' => 'nnu', 'Oeu005924.1' => 'oeu', 'Oeu008383.1' => 'oeu', 'Oeu014928.1' => 'oeu', 'Oeu019889.1' => 'oeu', 'Oeu022271.1' => 'oeu', 'Oeu025271.1' => 'oeu', 'Oeu036302.1' => 'oeu', 'Oeu044100.1' => 'oeu', 'Os01g0528300' => 'osa', 'Os03g0286200' => 'osa', 'Os04g0406600' => 'osa', 'Os07g0512000' => 'osa', 'Os07g0694600' => 'osa', 'Os08g0411000' => 'osa', 'Os09g0565700' => 'osa', 'Os09g0566050' => 'osa', 'Os10g0523700' => 'osa', 'Peaxi162Scf00002g00514' => 'pax', 'Peaxi162Scf00047g01817' => 'pax', 'Peaxi162Scf00114g00001' => 'pax', 'Peaxi162Scf00147g00613' => 'pax', 'Peaxi162Scf00389g00425' => 'pax', 'PGR042G1139' => 'pgr', 'PGR042G3273' => 'pgr', 'PGR102G2180' => 'pgr', 'PGR119G0234' => 'pgr', 'PGR119G0668' => 'pgr', 'PGSC0003DMG400007122' => 'stu', 'PGSC0003DMG400016478' => 'stu', 'PGSC0003DMG400025374' => 'stu', 'PGSC0003DMG400026536' => 'stu', 'Phvul.003G079600' => 'pvu', 'Phvul.005G115600' => 'pvu', 'Phvul.005G127100' => 'pvu', 'Phvul.006G149500' => 'pvu', 'Phvul.006G149600' => 'pvu', 'Phvul.011G071800' => 'pvu', 'Phvul.011G090400' => 'pvu', 'Potri.004G013400' => 'ptr', 'Potri.004G188100' => 'ptr', 'Potri.008G195500' => 'ptr', 'Potri.009G148800' => 'ptr', 'Potri.011G004700' => 'ptr', 'Pp3c17_22810' => 'ppa', 'Pp3c18_4480' => 'ppa', 'Pp3c19_13030' => 'ppa', 'Pp3c1_33620' => 'ppa', 'Pp3c2_9380' => 'ppa', 'PRCOL_00001023' => 'pco', 'Prupe.3G216300' => 'ppe', 'Prupe.4G019500' => 'ppe', 'Prupe.6G092500' => 'ppe', 'Prupe.6G119200' => 'ppe', 'Psat0s1945g0080' => 'psa', 'Psat0s4167g0040' => 'psa', 'Psat1g185800' => 'psa', 'Psat4g006440' => 'psa', 'Psat4g006480' => 'psa', 'Psat4g168120' => 'psa', 'Psat5g255680' => 'psa', 'Psat5g261760' => 'psa', 'Psat7g222120' => 'psa', 'PSO063G7252' => 'pso', 'PSO170G4778' => 'pso', 'PSO210G2249' => 'pso', 'PSO339G2411' => 'pso', 'PSO339G2457' => 'pso', 'PSO339G2854' => 'pso', 'PSO339G4288' => 'pso', 'PSO339G4615' => 'pso', 'PSO384G2796' => 'pso', 'PSO384G2940' => 'pso', 'PSO384G4227' => 'pso', 'PSO478G1425' => 'pso', 'PSO541G3863' => 'pso', 'PSO675G0507' => 'pso', 'PSO782G0338' => 'pso', 'PSO832G0644' => 'pso', 'QL01p013664' => 'qlo', 'QL01p036598' => 'qlo', 'QL05p072984' => 'qlo', 'QL08p005768' => 'qlo', 'QL08p032743' => 'qlo', 'QL93p0073_0439' => 'qlo', 'QL93p0073_0444' => 'qlo', 'RcHm_v2.0_Chr5g0002851' => 'rch', 'RcHm_v2.0_Chr5g0055201' => 'rch', 'RcHm_v2.0_Chr5g0061191' => 'rch', 'RcHm_v2.0_Chr7g0203231' => 'rch', 'Rhsim01G0208100' => 'rsi', 'Rhsim01G0208200' => 'rsi', 'Rhsim02G0106500' => 'rsi', 'Rhsim03G0107900' => 'rsi', 'Rhsim06G0163400' => 'rsi', 'Rhsim13G0105200' => 'rsi', 'Sabra04G0006300' => 'sbr', 'Sabra04G0127000' => 'sbr', 'Sabra08G0148700' => 'sbr', 'Sabra09G0117400' => 'sbr', 'SalBow1G3326' => 'sbo', 'SalBow3G3228' => 'sbo', 'SalBow6G1634' => 'sbo', 'SalBow6G3603' => 'sbo', 'SalBow6G5266' => 'sbo', 'SalBow7G2265' => 'sbo', 'SalBow8G0850' => 'sbo', 'SalBow8G2592' => 'sbo', 'Sc05g0009240' => 'sci', 'Sc12g0002300' => 'sci', 'Sc21g0000100' => 'sci', 'Sc21g0004720' => 'sci', 'Sed0002949' => 'sed', 'Sed0004114' => 'sed', 'Sed0004306' => 'sed', 'Sed0006172' => 'sed', 'Sed0008413' => 'sed', 'Sed0013809' => 'sed', 'Sed0019556' => 'sed', 'SEGI_03570' => 'sgi', 'SEGI_07859' => 'sgi', 'SEGI_15042' => 'sgi', 'SEGI_16263' => 'sgi', 'SEGI_16552' => 'sgi', 'SEGI_24331' => 'sgi', 'SEGI_27316' => 'sgi', 'SEGI_29521' => 'sgi', 'SEGI_41342' => 'sgi', 'SGA_v2.0_scaffold27G11617' => 'sas', 'SGA_v2.0_scaffold316G48428' => 'sas', 'SGA_v2.0_scaffold49G18261' => 'sas', 'SGA_v2.0_scaffold7G03831' => 'sas', 'SGA_v2.0_scaffold93G28359' => 'sas', 'SHI02210' => 'shi', 'SHI06028' => 'shi', 'SHI06321' => 'shi', 'SMO111G0012' => 'smo', 'SMO228G0080' => 'smo', 'SMO356G0756' => 'smo', 'Solyc02g080620.3' => 'sly', 'Solyc06g074530.1' => 'sly', 'Solyc11g066890.1' => 'sly', 'Solyc11g072520.3' => 'sly', 'Sopen02g025330' => 'spe', 'Sopen06g031000' => 'spe', 'Sopen09g008240' => 'spe', 'Sopen09g025210' => 'spe', 'Sopen11g026600' => 'spe', 'Sopen11g030170' => 'spe', 'Sp1g10420' => 'spa', 'Sp3g06570' => 'spa', 'Sp4g10660' => 'spa', 'Sp5g16460' => 'spa', 'Sp6g22710' => 'spa', 'TAR365G0112' => 'tar', 'TAR369G0717' => 'tar', 'TAR374G0976' => 'tar', 'TAR623G1128' => 'tar', 'TAR626G1937' => 'tar', 'TAR627G0123' => 'tar', 'TAR628G0305' => 'tar', 'TAR636G1176' => 'tar', 'TAR636G2442' => 'tar', 'THA.LOC104800556' => 'tha', 'THA.LOC104809501' => 'tha', 'THA.LOC104815126' => 'tha', 'THA.LOC104815732' => 'tha', 'THA.LOC104823528' => 'tha', 'Thecc.02G365600' => 'tca', 'Thecc.06G222300' => 'tca', 'Thecc.09G261800' => 'tca', 'Thecc.09G291400' => 'tca', 'Thhalv10003028m.g' => 'esa', 'Thhalv10007886m.g' => 'esa', 'Thhalv10016085m.g' => 'esa', 'Thhalv10016681m.g' => 'esa', 'Thhalv10020951m.g' => 'esa', 'TPR.G15598' => 'tpr', 'TPR.G29305' => 'tpr', 'TPR.G32395' => 'tpr', 'TPR.G36998' => 'tpr', 'TPR.G4227' => 'tpr', 'TWI18G1433' => 'twi', 'TWI31G0755' => 'twi', 'TWI38G0912' => 'twi', 'TWI75G1097' => 'twi', 'TWI75G1619' => 'twi', 'TWI79G1336' => 'twi', 'unitig_0.g943' => 'ugi', 'unitig_0.g944' => 'ugi', 'unitig_22.g6646' => 'ugi', 'unitig_37.g12681' => 'ugi', 'unitig_8.g3290' => 'ugi', 'vmacro03278' => 'vma', 'vmacro12197' => 'vma', 'vmacro14478' => 'vma', 'vmacro15787' => 'vma', 'vmacro15789' => 'vma', 'vmacro15790' => 'vma', 'vmacro15806' => 'vma', 'vmacro22907' => 'vma', 'vmacro22908' => 'vma', 'vmacro22909' => 'vma', 'vmacro23108' => 'vma', 'VMungo0540G0540' => 'vmu', 'VMungo0540G2468' => 'vmu', 'VMungo1080G0390' => 'vmu', 'VMungo1080G1165' => 'vmu', 'VMungo1127G0170' => 'vmu', 'VMungo1127G2099' => 'vmu', 'VMungo1215G3013' => 'vmu', 'Zm00001eb013110' => 'zma', 'Zm00001eb084260' => 'zma', 'Zm00001eb096110' => 'zma', 'Zm00001eb217510' => 'zma', 'Zm00001eb322550' => 'zma', 'Zm00001eb390770' => 'zma', 'Zm00001eb397170' => 'zma', 'Zm00001eb404610' => 'zma', 'Zm00001eb421790' => 'zma' ) $gf_id = 'HOM05D000911' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000911' ) $data_identifier = 'HOM05D000911' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 16, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 5, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 6, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 8, 'nnu' => (int) 16, 'oeu' => (int) 8, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 5, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 16, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421790' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000911', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27780' => 'bna', 'A03p35380' => 'bna', 'A04p21160' => 'bna', 'A05p40570' => 'bna', 'A06p26900' => 'bna', 'A08p33230' => 'bna', 'A09p65960' => 'bna', 'A10p18290' => 'bna', 'Aa31LG1G12990' => 'aar', 'Aa31LG1G2980' => 'aar', 'Aa31LG4G14320' => 'aar', 'Aa31LG7G11800' => 'aar', 'Aa31sc36G50' => 'aar', 'Aa31sc36G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3721' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5459' => 'aag', 'Actinidia03028' => 'ach', 'Actinidia03753' => 'ach', 'Actinidia04187' => 'ach', 'Actinidia05509' => 'ach', 'Actinidia24180' => 'ach', 'Actinidia26906' => 'ach', 'Actinidia37097' => 'ach', 'Actinidia38249' => 'ach', 'Ah.01g003470' => 'amhyb', 'Ah.01g004580' => 'amhyb', 'Ah.01g014850' => 'amhyb', 'Ah.01g016830' => 'amhyb', 'Ah.14g088000' => 'amhyb', 'AL1G22980' => 'aly', 'AL3G18990' => 'aly', 'AL4G22440' => 'aly', 'AL4G33180' => 'aly', 'AL5G22920' => 'aly', 'AL6G33660' => 'aly', 'AL8G20720' => 'aly', 'Aqoxy1G00935' => 'aox', 'Aqoxy1G02094' => 'aox', 'Aqoxy2G01239' => 'aox', 'Aqoxy4G01870' => 'aox', 'Aqoxy7G00450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.36ZVTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71EM27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5D6C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH3WRE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3NCM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RIM768' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YB5YRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z36GDV' => 'arhy', 'AT1G08250' => 'ath', 'AT1G11790' => 'ath', 'AT2G27820' => 'ath', 'AT3G07630' => 'ath', 'AT3G44720' => 'ath', 'AT5G22630' => 'ath', 'ATR0693G304' => 'atr', 'ATR0794G109' => 'atr', 'ATR0820G120' => 'atr', 'ATR1159G064' => 'atr', 'Atru.chr10.2239' => 'acertr', 'Atru.chr3.3371' => 'acertr', 'Atru.chr6.3202' => 'acertr', 'AUR62006499' => 'cqu', 'AUR62012718' => 'cqu', 'AUR62021938' => 'cqu', 'AUR62023932' => 'cqu', 'AUR62025034' => 'cqu', 'AUR62025035' => 'cqu', 'AUR62038307' => 'cqu', 'AUR62043466' => 'cqu', 'BcaB02g10748' => 'bca', 'BcaB03g13231' => 'bca', 'BcaB03g14689' => 'bca', 'BcaB05g22716' => 'bca', 'BcaB06g28172' => 'bca', 'BcaB08g36413' => 'bca', 'BcaC01g02186' => 'bca', 'BcaC01g04272' => 'bca', 'BcaC02g08080' => 'bca', 'BcaC02g08227' => 'bca', 'BcaC03g13901' => 'bca', 'BcaC04g19593' => 'bca', 'BcaC04g20874' => 'bca', 'BcaC05g29557' => 'bca', 'BcaC06g35505' => 'bca', 'BcaC07g41954' => 'bca', 'BcaC07g41955' => 'bca', 'BcaC07g41956' => 'bca', 'BcaC07g42519' => 'bca', 'BcaC07g42520' => 'bca', 'BcaC07g42523' => 'bca', 'BcaC07g42524' => 'bca', 'BcaC07g42525' => 'bca', 'BcaC08g47480' => 'bca', 'BcaC08g47481' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00530' => 'bna', 'BolC2t07178H' => 'bol', 'BolC3t16567H' => 'bol', 'BolC4t27234H' => 'bol', 'BolC5t29728H' => 'bol', 'BolC5t34622H' => 'bol', 'BolC6t40321H' => 'bol', 'BolC7t42028H' => 'bol', 'BolC8t49125H' => 'bol', 'BolC8t52538H' => 'bol', 'BolC8t52539H' => 'bol', 'BolC9t56681H' => 'bol', 'BolC9t58266H' => 'bol', 'BolSC21t60294H' => 'bol', 'BraA02t05670Z' => 'bra', 'BraA03t12716Z' => 'bra', 'BraA04t17685Z' => 'bra', 'BraA05t22788Z' => 'bra', 'BraA06t24032Z' => 'bra', 'BraA06t25625Z' => 'bra', 'BraA07t27930Z' => 'bra', 'BraA08t35242Z' => 'bra', 'BraA09t38609Z' => 'bra', 'BraA10t43905Z' => 'bra', 'C02p11060' => 'bna', 'C03p42990' => 'bna', 'C03p67310' => 'bna', 'C04p56990' => 'bna', 'C04p58660' => 'bna', 'C05p09890' => 'bna', 'C05p59680' => 'bna', 'C06p19830' => 'bna', 'C06p53040' => 'bna', 'C07p15230' => 'bna', 'C08p50070' => 'bna', 'C08p50090' => 'bna', 'C09p38330' => 'bna', 'C09p53940' => 'bna', 'CAN.G1014.1' => 'can', 'CAN.G644.30' => 'can', 'CAN.G84.47' => 'can', 'CAN.G919.8' => 'can', 'CANSAT54G0113' => 'cansat', 'CANSAT54G1286' => 'cansat', 'CANSAT64G1020' => 'cansat', 'CARHR008080' => 'chi', 'CARHR008090' => 'chi', 'CARHR012130' => 'chi', 'CARHR038390' => 'chi', 'CARHR082330' => 'chi', 'CARHR120520' => 'chi', 'CARHR151470' => 'chi', 'CARHR190950' => 'chi', 'Carub.0001s0760' => 'cru', 'Carub.0001s1146' => 'cru', 'Carub.0003s0721' => 'cru', 'Carub.0004s0858' => 'cru', 'Carub.0005s1040' => 'cru', 'Carub.0006s2035' => 'cru', 'Carub.0015s0005' => 'cru', 'Ca_01607_v3' => 'car', 'Ca_01677_v3' => 'car', 'Ca_06087_v3' => 'car', 'Ca_19238_v3' => 'car', 'Ca_19373_v3' => 'car', 'Ca_21079_v3' => 'car', 'CBR_g54016' => 'cbr', 'CBR_g54018' => 'cbr', 'CBR_g54020' => 'cbr', 'Cc01_g09780' => 'ccan', 'Cc01_g11680' => 'ccan', 'Cc02_g15610' => 'ccan', 'Cc05_g04350' => 'ccan', 'Cc09_g01580' => 'ccan', 'CDE01G0795' => 'cde', 'CDE02G2024' => 'cde', 'CDE02G2260' => 'cde', 'CDE02G4561' => 'cde', 'CDE05G2733' => 'cde', 'CDE05G3422' => 'cde', 'CDE06G2003' => 'cde', 'CDE08G0576' => 'cde', 'CDE09G0048' => 'cde', 'CDE11G0805' => 'cde', 'Cfa003644' => 'cfa', 'Cfa006290' => 'cfa', 'Cfa010080' => 'cfa', 'Cfa011376' => 'cfa', 'Cfa011576' => 'cfa', 'Cfa011577' => 'cfa', 'Cfa014389' => 'cfa', 'Ciclev10006044m.g' => 'ccl', 'Ciclev10006954m.g' => 'ccl', 'Ciclev10015131m.g' => 'ccl', 'Ciclev10015580m.g' => 'ccl', 'Ciclev10028359m.g' => 'ccl', 'Ciclev10028573m.g' => 'ccl', 'CiPaw.03G159300' => 'cil', 'CiPaw.04G115100' => 'cil', 'CiPaw.09G092800' => 'cil', 'CiPaw.10G071800' => 'cil', 'CiPaw.13G105800' => 'cil', 'CiPaw.13G141000' => 'cil', 'CiPaw.14G103400' => 'cil', 'ClCG01G012700' => 'cla', 'ClCG01G012720' => 'cla', 'ClCG01G021920' => 'cla', 'ClCG02G008870' => 'cla', 'ClCG02G020840' => 'cla', 'ClCG02G021930' => 'cla', 'COL.COLO4_19302' => 'col', 'COL.COLO4_25262' => 'col', 'COL.COLO4_31788' => 'col', 'Cpa.g.c34684' => 'cpa', 'Cpa.g.c36520.1' => 'cpa', 'Cpa.g.c45626' => 'cpa', 'Cpa.g.sc121.17' => 'cpa', 'Cpa.g.sc13.22' => 'cpa', 'Cpa.g.sc87.88' => 'cpa', 'Cre06.g261800' => 'cre', 'CsaV3_1G014500' => 'csa', 'CsaV3_1G014510' => 'csa', 'CsaV3_2G034880' => 'csa', 'CsaV3_6G014760' => 'csa', 'CsaV3_6G021500' => 'csa', 'CsaV3_6G048980' => 'csa', 'CSS0002511' => 'camsi', 'CSS0007556' => 'camsi', 'CSS0008532' => 'camsi', 'CSS0009709' => 'camsi', 'CSS0010486' => 'camsi', 'CSS0016768' => 'camsi', 'CSS0023512' => 'camsi', 'CSS0025341' => 'camsi', 'CSS0027999' => 'camsi', 'CSS0028944' => 'camsi', 'CSS0032292' => 'camsi', 'CSS0032464' => 'camsi', 'CSS0037153' => 'camsi', 'CSS0039256' => 'camsi', 'CSS0048392' => 'camsi', 'CSS0050458' => 'camsi', 'DCAR_004224' => 'dca', 'DCAR_006147' => 'dca', 'DCAR_006465' => 'dca', 'DCAR_008159' => 'dca', 'DCAR_012164' => 'dca', 'DCAR_019764' => 'dca', 'Dinv05418' => 'din', 'Dinv10839' => 'din', 'Dinv12521' => 'din', 'Dinv13900' => 'din', 'Dinv29426' => 'din', 'Duzib150G0263' => 'dzi', 'Duzib168G1178' => 'dzi', 'Duzib168G1924' => 'dzi', 'Duzib170G0299' => 'dzi', 'Duzib170G0813' => 'dzi', 'Duzib235G1128' => 'dzi', 'Duzib248G1060' => 'dzi', 'ECA232G1910' => 'eca', 'ECA233G4621' => 'eca', 'ECA238G1216' => 'eca', 'ECA238G1784' => 'eca', 'ECA248G1242' => 'eca', 'EL10Ac8g20071' => 'bvu', 'EL10Ac9g21086' => 'bvu', 'EL10Ac9g22407' => 'bvu', 'EL10Ac9g22412' => 'bvu', 'Eucgr.A01119' => 'egr', 'Eucgr.E04043' => 'egr', 'Eucgr.J00428' => 'egr', 'Eucgr.J00958' => 'egr', 'FAN11G3091' => 'fan', 'FAN11G3651' => 'fan', 'FAN16G2566' => 'fan', 'FAN21G3155' => 'fan', 'FAN21G3400' => 'fan', 'FAN21G3543' => 'fan', 'FAN25G0234' => 'fan', 'FAN25G1422' => 'fan', 'FAN25G3392' => 'fan', 'FvH4_3g01940' => 'fve', 'FvH4_3g29870' => 'fve', 'FvH4_3g33680' => 'fve', 'Glyma.09G004200' => 'gma', 'Glyma.11G151288' => 'gma', 'Glyma.11G189100' => 'gma', 'Glyma.12G072500' => 'gma', 'Glyma.12G085500' => 'gma', 'Glyma.12G181800' => 'gma', 'Glyma.12G193000' => 'gma', 'Glyma.13G309300' => 'gma', 'Glyma.13G319000' => 'gma', 'Glyma.17G012600' => 'gma', 'Gohir.A06G148600' => 'ghi', 'Gohir.A07G115800' => 'ghi', 'Gohir.A08G003600' => 'ghi', 'Gohir.A09G093300' => 'ghi', 'Gohir.A09G105400' => 'ghi', 'Gohir.A09G105500' => 'ghi', 'Gohir.D06G154600' => 'ghi', 'Gohir.D07G120200' => 'ghi', 'Gohir.D08G013900' => 'ghi', 'Gohir.D09G093100' => 'ghi', 'Gohir.D09G102200' => 'ghi', 'Gohir.D09G102300' => 'ghi', 'Gorai.001G129400' => 'gra', 'Gorai.004G008200' => 'gra', 'Gorai.006G109800' => 'gra', 'Gorai.006G119500' => 'gra', 'Gorai.006G121300' => 'gra', 'Gorai.010G180700' => 'gra', 'GSVIVG01012716001' => 'vvi', 'GSVIVG01025118001' => 'vvi', 'GSVIVG01030439001' => 'vvi', 'GSVIVG01031397001' => 'vvi', 'HanXRQChr01g0004201' => 'han', 'HanXRQChr02g0054941' => 'han', 'HanXRQChr05g0141811' => 'han', 'HanXRQChr07g0197751' => 'han', 'HanXRQChr11g0346691' => 'han', 'HanXRQChr13g0396971' => 'han', 'HanXRQChr14g0432951' => 'han', 'HanXRQChr14g0452001' => 'han', 'HanXRQChr15g0496681' => 'han', 'HanXRQChr17g0557491' => 'han', 'HanXRQChr17g0557501' => 'han', 'Haze_06809' => 'cav', 'Haze_12852' => 'cav', 'Haze_15850' => 'cav', 'Haze_23446' => 'cav', 'Haze_23942' => 'cav', 'Haze_23943' => 'cav', 'Hma1.2p1_0091F.1_g046450' => 'hma', 'Hma1.2p1_0128F.1_g059910' => 'hma', 'Hma1.2p1_0249F.1_g102260' => 'hma', 'Hma1.2p1_0453F.1_g156190' => 'hma', 'Hma1.2p1_0695F.1_g204380' => 'hma', 'Hma1.2p1_0749F.1_g212650' => 'hma', 'Hma1.2p1_2156F.1_g315420' => 'hma', 'Hma1.2p1_2686F.1_g326940' => 'hma', 'HPP92_006428' => 'vpl', 'HPP92_012069' => 'vpl', 'HPP92_014129' => 'vpl', 'HPP92_014133' => 'vpl', 'HPP92_017315' => 'vpl', 'HPP92_026445' => 'vpl', 'HPP92_026446' => 'vpl', 'Hund00774' => 'sun', 'Hund07682' => 'sun', 'Hund21413' => 'sun', 'Hund23462' => 'sun', 'Hund23463' => 'sun', 'Lalb_Chr03g0027911' => 'lal', 'Lalb_Chr13g0304271' => 'lal', 'Lalb_Chr19g0137471' => 'lal', 'Lalb_Chr22g0350651' => 'lal', 'Lalb_Chr24g0395151' => 'lal', 'Lj1A1231T40' => 'lonja', 'Lj1A221T48' => 'lonja', 'Lj1C924T12' => 'lonja', 'Lj2C993G6' => 'lonja', 'Lj3g0005790' => 'lja', 'Lj3g0015432' => 'lja', 'Lj3g0017722' => 'lja', 'Lj3g0018497' => 'lja', 'Lj4g0025071' => 'lja', 'Lsat_1_v5_gn_1_129680' => 'lsa', 'Lsat_1_v5_gn_2_25321' => 'lsa', 'Lsat_1_v5_gn_2_95461' => 'lsa', 'Lsat_1_v5_gn_4_159620' => 'lsa', 'Lsat_1_v5_gn_6_41301' => 'lsa', 'Lsat_1_v5_gn_6_74660' => 'lsa', 'Lsat_1_v5_gn_7_11520' => 'lsa', 'Lsat_1_v5_gn_9_67680' => 'lsa', 'Manes.04G008300' => 'mes', 'Manes.04G008400' => 'mes', 'Manes.04G026500' => 'mes', 'Manes.10G135300' => 'mes', 'Manes.11G157300' => 'mes', 'Manes.12G074000' => 'mes', 'Manes.16G006200' => 'mes', 'Manes.17G026400' => 'mes', 'Mapoly0024s0086' => 'mpo', 'Mapoly0024s0087' => 'mpo', 'Mapoly0071s0057' => 'mpo', 'Mapoly0204s0012' => 'mpo', 'MBI04_g37681_MAGBIO' => 'mbi', 'MBI05_g17779_MAGBIO' => 'mbi', 'MBI12_g31184_MAGBIO' => 'mbi', 'MBI17_g11083_MAGBIO' => 'mbi', 'MBI18_g03883_MAGBIO' => 'mbi', 'MBI18_g28940_MAGBIO' => 'mbi', 'MCO01G690' => 'mco', 'MD03G1109900' => 'mdo', 'MD03G1134800' => 'mdo', 'MD05G1348000' => 'mdo', 'MD10G1322400' => 'mdo', 'MD11G1123300' => 'mdo', 'MD11G1157600' => 'mdo', 'Medtr2g084875' => 'mtr', 'Medtr2g088130' => 'mtr', 'Medtr4g055310' => 'mtr', 'Medtr4g061070' => 'mtr', 'Medtr4g132250' => 'mtr', 'MELO3C004795.2' => 'cme', 'MELO3C004797.2' => 'cme', 'MELO3C007396.2' => 'cme', 'MELO3C019277.2' => 'cme', 'MELO3C021449.2' => 'cme', 'MELO3C025736.2' => 'cme', 'Migut.D02175' => 'egut', 'Migut.H01573' => 'egut', 'Migut.M01327' => 'egut', 'Migut.N02513' => 'egut', 'MSTRG.14638' => 'ama', 'MSTRG.18632' => 'ama', 'MSTRG.7203' => 'ama', 'Nitab4.5_0000533g0140' => 'nta', 'Nitab4.5_0000888g0150' => 'nta', 'Nitab4.5_0001453g0040' => 'nta', 'Nitab4.5_0002827g0090' => 'nta', 'Nitab4.5_0003082g0040' => 'nta', 'Nitab4.5_0007799g0040' => 'nta', 'Nitab4.5_0008983g0010' => 'nta', 'Nitab4.5_0009017g0020' => 'nta', 'Nn1g02132' => 'nnu', 'Nn1g03492' => 'nnu', 'Nn1g03493' => 'nnu', 'Nn1g03494' => 'nnu', 'Nn1g07164' => 'nnu', 'Nn1g07291' => 'nnu', 'Nn2g10655' => 'nnu', 'Nn2g11652' => 'nnu', 'Nn2g14008' => 'nnu', 'Nn3g17476' => 'nnu', 'Nn3g17477' => 'nnu', 'Nn4g22370' => 'nnu', 'Nn4g25255' => 'nnu', 'Nn5g27755' => 'nnu', 'Nn6g34260' => 'nnu', 'Nn6g35041' => 'nnu', 'Oeu005924.1' => 'oeu', 'Oeu008383.1' => 'oeu', 'Oeu014928.1' => 'oeu', 'Oeu019889.1' => 'oeu', 'Oeu022271.1' => 'oeu', 'Oeu025271.1' => 'oeu', 'Oeu036302.1' => 'oeu', 'Oeu044100.1' => 'oeu', 'Os01g0528300' => 'osa', 'Os03g0286200' => 'osa', 'Os04g0406600' => 'osa', 'Os07g0512000' => 'osa', 'Os07g0694600' => 'osa', 'Os08g0411000' => 'osa', 'Os09g0565700' => 'osa', 'Os09g0566050' => 'osa', 'Os10g0523700' => 'osa', 'Peaxi162Scf00002g00514' => 'pax', 'Peaxi162Scf00047g01817' => 'pax', 'Peaxi162Scf00114g00001' => 'pax', 'Peaxi162Scf00147g00613' => 'pax', 'Peaxi162Scf00389g00425' => 'pax', 'PGR042G1139' => 'pgr', 'PGR042G3273' => 'pgr', 'PGR102G2180' => 'pgr', 'PGR119G0234' => 'pgr', 'PGR119G0668' => 'pgr', 'PGSC0003DMG400007122' => 'stu', 'PGSC0003DMG400016478' => 'stu', 'PGSC0003DMG400025374' => 'stu', 'PGSC0003DMG400026536' => 'stu', 'Phvul.003G079600' => 'pvu', 'Phvul.005G115600' => 'pvu', 'Phvul.005G127100' => 'pvu', 'Phvul.006G149500' => 'pvu', 'Phvul.006G149600' => 'pvu', 'Phvul.011G071800' => 'pvu', 'Phvul.011G090400' => 'pvu', 'Potri.004G013400' => 'ptr', 'Potri.004G188100' => 'ptr', 'Potri.008G195500' => 'ptr', 'Potri.009G148800' => 'ptr', 'Potri.011G004700' => 'ptr', 'Pp3c17_22810' => 'ppa', 'Pp3c18_4480' => 'ppa', 'Pp3c19_13030' => 'ppa', 'Pp3c1_33620' => 'ppa', 'Pp3c2_9380' => 'ppa', 'PRCOL_00001023' => 'pco', 'Prupe.3G216300' => 'ppe', 'Prupe.4G019500' => 'ppe', 'Prupe.6G092500' => 'ppe', 'Prupe.6G119200' => 'ppe', 'Psat0s1945g0080' => 'psa', 'Psat0s4167g0040' => 'psa', 'Psat1g185800' => 'psa', 'Psat4g006440' => 'psa', 'Psat4g006480' => 'psa', 'Psat4g168120' => 'psa', 'Psat5g255680' => 'psa', 'Psat5g261760' => 'psa', 'Psat7g222120' => 'psa', 'PSO063G7252' => 'pso', 'PSO170G4778' => 'pso', 'PSO210G2249' => 'pso', 'PSO339G2411' => 'pso', 'PSO339G2457' => 'pso', 'PSO339G2854' => 'pso', 'PSO339G4288' => 'pso', 'PSO339G4615' => 'pso', 'PSO384G2796' => 'pso', 'PSO384G2940' => 'pso', 'PSO384G4227' => 'pso', 'PSO478G1425' => 'pso', 'PSO541G3863' => 'pso', 'PSO675G0507' => 'pso', 'PSO782G0338' => 'pso', 'PSO832G0644' => 'pso', 'QL01p013664' => 'qlo', 'QL01p036598' => 'qlo', 'QL05p072984' => 'qlo', 'QL08p005768' => 'qlo', 'QL08p032743' => 'qlo', 'QL93p0073_0439' => 'qlo', 'QL93p0073_0444' => 'qlo', 'RcHm_v2.0_Chr5g0002851' => 'rch', 'RcHm_v2.0_Chr5g0055201' => 'rch', 'RcHm_v2.0_Chr5g0061191' => 'rch', 'RcHm_v2.0_Chr7g0203231' => 'rch', 'Rhsim01G0208100' => 'rsi', 'Rhsim01G0208200' => 'rsi', 'Rhsim02G0106500' => 'rsi', 'Rhsim03G0107900' => 'rsi', 'Rhsim06G0163400' => 'rsi', 'Rhsim13G0105200' => 'rsi', 'Sabra04G0006300' => 'sbr', 'Sabra04G0127000' => 'sbr', 'Sabra08G0148700' => 'sbr', 'Sabra09G0117400' => 'sbr', 'SalBow1G3326' => 'sbo', 'SalBow3G3228' => 'sbo', 'SalBow6G1634' => 'sbo', 'SalBow6G3603' => 'sbo', 'SalBow6G5266' => 'sbo', 'SalBow7G2265' => 'sbo', 'SalBow8G0850' => 'sbo', 'SalBow8G2592' => 'sbo', 'Sc05g0009240' => 'sci', 'Sc12g0002300' => 'sci', 'Sc21g0000100' => 'sci', 'Sc21g0004720' => 'sci', 'Sed0002949' => 'sed', 'Sed0004114' => 'sed', 'Sed0004306' => 'sed', 'Sed0006172' => 'sed', 'Sed0008413' => 'sed', 'Sed0013809' => 'sed', 'Sed0019556' => 'sed', 'SEGI_03570' => 'sgi', 'SEGI_07859' => 'sgi', 'SEGI_15042' => 'sgi', 'SEGI_16263' => 'sgi', 'SEGI_16552' => 'sgi', 'SEGI_24331' => 'sgi', 'SEGI_27316' => 'sgi', 'SEGI_29521' => 'sgi', 'SEGI_41342' => 'sgi', 'SGA_v2.0_scaffold27G11617' => 'sas', 'SGA_v2.0_scaffold316G48428' => 'sas', 'SGA_v2.0_scaffold49G18261' => 'sas', 'SGA_v2.0_scaffold7G03831' => 'sas', 'SGA_v2.0_scaffold93G28359' => 'sas', 'SHI02210' => 'shi', 'SHI06028' => 'shi', 'SHI06321' => 'shi', 'SMO111G0012' => 'smo', 'SMO228G0080' => 'smo', 'SMO356G0756' => 'smo', 'Solyc02g080620.3' => 'sly', 'Solyc06g074530.1' => 'sly', 'Solyc11g066890.1' => 'sly', 'Solyc11g072520.3' => 'sly', 'Sopen02g025330' => 'spe', 'Sopen06g031000' => 'spe', 'Sopen09g008240' => 'spe', 'Sopen09g025210' => 'spe', 'Sopen11g026600' => 'spe', 'Sopen11g030170' => 'spe', 'Sp1g10420' => 'spa', 'Sp3g06570' => 'spa', 'Sp4g10660' => 'spa', 'Sp5g16460' => 'spa', 'Sp6g22710' => 'spa', 'TAR365G0112' => 'tar', 'TAR369G0717' => 'tar', 'TAR374G0976' => 'tar', 'TAR623G1128' => 'tar', 'TAR626G1937' => 'tar', 'TAR627G0123' => 'tar', 'TAR628G0305' => 'tar', 'TAR636G1176' => 'tar', 'TAR636G2442' => 'tar', 'THA.LOC104800556' => 'tha', 'THA.LOC104809501' => 'tha', 'THA.LOC104815126' => 'tha', 'THA.LOC104815732' => 'tha', 'THA.LOC104823528' => 'tha', 'Thecc.02G365600' => 'tca', 'Thecc.06G222300' => 'tca', 'Thecc.09G261800' => 'tca', 'Thecc.09G291400' => 'tca', 'Thhalv10003028m.g' => 'esa', 'Thhalv10007886m.g' => 'esa', 'Thhalv10016085m.g' => 'esa', 'Thhalv10016681m.g' => 'esa', 'Thhalv10020951m.g' => 'esa', 'TPR.G15598' => 'tpr', 'TPR.G29305' => 'tpr', 'TPR.G32395' => 'tpr', 'TPR.G36998' => 'tpr', 'TPR.G4227' => 'tpr', 'TWI18G1433' => 'twi', 'TWI31G0755' => 'twi', 'TWI38G0912' => 'twi', 'TWI75G1097' => 'twi', 'TWI75G1619' => 'twi', 'TWI79G1336' => 'twi', 'unitig_0.g943' => 'ugi', 'unitig_0.g944' => 'ugi', 'unitig_22.g6646' => 'ugi', 'unitig_37.g12681' => 'ugi', 'unitig_8.g3290' => 'ugi', 'vmacro03278' => 'vma', 'vmacro12197' => 'vma', 'vmacro14478' => 'vma', 'vmacro15787' => 'vma', 'vmacro15789' => 'vma', 'vmacro15790' => 'vma', 'vmacro15806' => 'vma', 'vmacro22907' => 'vma', 'vmacro22908' => 'vma', 'vmacro22909' => 'vma', 'vmacro23108' => 'vma', 'VMungo0540G0540' => 'vmu', 'VMungo0540G2468' => 'vmu', 'VMungo1080G0390' => 'vmu', 'VMungo1080G1165' => 'vmu', 'VMungo1127G0170' => 'vmu', 'VMungo1127G2099' => 'vmu', 'VMungo1215G3013' => 'vmu', 'Zm00001eb013110' => 'zma', 'Zm00001eb084260' => 'zma', 'Zm00001eb096110' => 'zma', 'Zm00001eb217510' => 'zma', 'Zm00001eb322550' => 'zma', 'Zm00001eb390770' => 'zma', 'Zm00001eb397170' => 'zma', 'Zm00001eb404610' => 'zma', 'Zm00001eb421790' => 'zma' ), 'gf_id' => 'HOM05D000911', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000911' ), 'data_identifier' => 'HOM05D000911', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000911', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27780' => 'bna', 'A03p35380' => 'bna', 'A04p21160' => 'bna', 'A05p40570' => 'bna', 'A06p26900' => 'bna', 'A08p33230' => 'bna', 'A09p65960' => 'bna', 'A10p18290' => 'bna', 'Aa31LG1G12990' => 'aar', 'Aa31LG1G2980' => 'aar', 'Aa31LG4G14320' => 'aar', 'Aa31LG7G11800' => 'aar', 'Aa31sc36G50' => 'aar', 'Aa31sc36G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3721' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5459' => 'aag', 'Actinidia03028' => 'ach', 'Actinidia03753' => 'ach', 'Actinidia04187' => 'ach', 'Actinidia05509' => 'ach', 'Actinidia24180' => 'ach', 'Actinidia26906' => 'ach', 'Actinidia37097' => 'ach', 'Actinidia38249' => 'ach', 'Ah.01g003470' => 'amhyb', 'Ah.01g004580' => 'amhyb', 'Ah.01g014850' => 'amhyb', 'Ah.01g016830' => 'amhyb', 'Ah.14g088000' => 'amhyb', 'AL1G22980' => 'aly', 'AL3G18990' => 'aly', 'AL4G22440' => 'aly', 'AL4G33180' => 'aly', 'AL5G22920' => 'aly', 'AL6G33660' => 'aly', 'AL8G20720' => 'aly', 'Aqoxy1G00935' => 'aox', 'Aqoxy1G02094' => 'aox', 'Aqoxy2G01239' => 'aox', 'Aqoxy4G01870' => 'aox', 'Aqoxy7G00450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.36ZVTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71EM27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5D6C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH3WRE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3NCM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RIM768' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YB5YRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z36GDV' => 'arhy', 'AT1G08250' => 'ath', 'AT1G11790' => 'ath', 'AT2G27820' => 'ath', 'AT3G07630' => 'ath', 'AT3G44720' => 'ath', 'AT5G22630' => 'ath', 'ATR0693G304' => 'atr', 'ATR0794G109' => 'atr', 'ATR0820G120' => 'atr', 'ATR1159G064' => 'atr', 'Atru.chr10.2239' => 'acertr', 'Atru.chr3.3371' => 'acertr', 'Atru.chr6.3202' => 'acertr', 'AUR62006499' => 'cqu', 'AUR62012718' => 'cqu', 'AUR62021938' => 'cqu', 'AUR62023932' => 'cqu', 'AUR62025034' => 'cqu', 'AUR62025035' => 'cqu', 'AUR62038307' => 'cqu', 'AUR62043466' => 'cqu', 'BcaB02g10748' => 'bca', 'BcaB03g13231' => 'bca', 'BcaB03g14689' => 'bca', 'BcaB05g22716' => 'bca', 'BcaB06g28172' => 'bca', 'BcaB08g36413' => 'bca', 'BcaC01g02186' => 'bca', 'BcaC01g04272' => 'bca', 'BcaC02g08080' => 'bca', 'BcaC02g08227' => 'bca', 'BcaC03g13901' => 'bca', 'BcaC04g19593' => 'bca', 'BcaC04g20874' => 'bca', 'BcaC05g29557' => 'bca', 'BcaC06g35505' => 'bca', 'BcaC07g41954' => 'bca', 'BcaC07g41955' => 'bca', 'BcaC07g41956' => 'bca', 'BcaC07g42519' => 'bca', 'BcaC07g42520' => 'bca', 'BcaC07g42523' => 'bca', 'BcaC07g42524' => 'bca', 'BcaC07g42525' => 'bca', 'BcaC08g47480' => 'bca', 'BcaC08g47481' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00530' => 'bna', 'BolC2t07178H' => 'bol', 'BolC3t16567H' => 'bol', 'BolC4t27234H' => 'bol', 'BolC5t29728H' => 'bol', 'BolC5t34622H' => 'bol', 'BolC6t40321H' => 'bol', 'BolC7t42028H' => 'bol', 'BolC8t49125H' => 'bol', 'BolC8t52538H' => 'bol', 'BolC8t52539H' => 'bol', 'BolC9t56681H' => 'bol', 'BolC9t58266H' => 'bol', 'BolSC21t60294H' => 'bol', 'BraA02t05670Z' => 'bra', 'BraA03t12716Z' => 'bra', 'BraA04t17685Z' => 'bra', 'BraA05t22788Z' => 'bra', 'BraA06t24032Z' => 'bra', 'BraA06t25625Z' => 'bra', 'BraA07t27930Z' => 'bra', 'BraA08t35242Z' => 'bra', 'BraA09t38609Z' => 'bra', 'BraA10t43905Z' => 'bra', 'C02p11060' => 'bna', 'C03p42990' => 'bna', 'C03p67310' => 'bna', 'C04p56990' => 'bna', 'C04p58660' => 'bna', 'C05p09890' => 'bna', 'C05p59680' => 'bna', 'C06p19830' => 'bna', 'C06p53040' => 'bna', 'C07p15230' => 'bna', 'C08p50070' => 'bna', 'C08p50090' => 'bna', 'C09p38330' => 'bna', 'C09p53940' => 'bna', 'CAN.G1014.1' => 'can', 'CAN.G644.30' => 'can', 'CAN.G84.47' => 'can', 'CAN.G919.8' => 'can', 'CANSAT54G0113' => 'cansat', 'CANSAT54G1286' => 'cansat', 'CANSAT64G1020' => 'cansat', 'CARHR008080' => 'chi', 'CARHR008090' => 'chi', 'CARHR012130' => 'chi', 'CARHR038390' => 'chi', 'CARHR082330' => 'chi', 'CARHR120520' => 'chi', 'CARHR151470' => 'chi', 'CARHR190950' => 'chi', 'Carub.0001s0760' => 'cru', 'Carub.0001s1146' => 'cru', 'Carub.0003s0721' => 'cru', 'Carub.0004s0858' => 'cru', 'Carub.0005s1040' => 'cru', 'Carub.0006s2035' => 'cru', 'Carub.0015s0005' => 'cru', 'Ca_01607_v3' => 'car', 'Ca_01677_v3' => 'car', 'Ca_06087_v3' => 'car', 'Ca_19238_v3' => 'car', 'Ca_19373_v3' => 'car', 'Ca_21079_v3' => 'car', 'CBR_g54016' => 'cbr', 'CBR_g54018' => 'cbr', 'CBR_g54020' => 'cbr', 'Cc01_g09780' => 'ccan', 'Cc01_g11680' => 'ccan', 'Cc02_g15610' => 'ccan', 'Cc05_g04350' => 'ccan', 'Cc09_g01580' => 'ccan', 'CDE01G0795' => 'cde', 'CDE02G2024' => 'cde', 'CDE02G2260' => 'cde', 'CDE02G4561' => 'cde', 'CDE05G2733' => 'cde', 'CDE05G3422' => 'cde', 'CDE06G2003' => 'cde', 'CDE08G0576' => 'cde', 'CDE09G0048' => 'cde', 'CDE11G0805' => 'cde', 'Cfa003644' => 'cfa', 'Cfa006290' => 'cfa', 'Cfa010080' => 'cfa', 'Cfa011376' => 'cfa', 'Cfa011576' => 'cfa', 'Cfa011577' => 'cfa', 'Cfa014389' => 'cfa', 'Ciclev10006044m.g' => 'ccl', 'Ciclev10006954m.g' => 'ccl', 'Ciclev10015131m.g' => 'ccl', 'Ciclev10015580m.g' => 'ccl', 'Ciclev10028359m.g' => 'ccl', 'Ciclev10028573m.g' => 'ccl', 'CiPaw.03G159300' => 'cil', 'CiPaw.04G115100' => 'cil', 'CiPaw.09G092800' => 'cil', 'CiPaw.10G071800' => 'cil', 'CiPaw.13G105800' => 'cil', 'CiPaw.13G141000' => 'cil', 'CiPaw.14G103400' => 'cil', 'ClCG01G012700' => 'cla', 'ClCG01G012720' => 'cla', 'ClCG01G021920' => 'cla', 'ClCG02G008870' => 'cla', 'ClCG02G020840' => 'cla', 'ClCG02G021930' => 'cla', 'COL.COLO4_19302' => 'col', 'COL.COLO4_25262' => 'col', 'COL.COLO4_31788' => 'col', 'Cpa.g.c34684' => 'cpa', 'Cpa.g.c36520.1' => 'cpa', 'Cpa.g.c45626' => 'cpa', 'Cpa.g.sc121.17' => 'cpa', 'Cpa.g.sc13.22' => 'cpa', 'Cpa.g.sc87.88' => 'cpa', 'Cre06.g261800' => 'cre', 'CsaV3_1G014500' => 'csa', 'CsaV3_1G014510' => 'csa', 'CsaV3_2G034880' => 'csa', 'CsaV3_6G014760' => 'csa', 'CsaV3_6G021500' => 'csa', 'CsaV3_6G048980' => 'csa', 'CSS0002511' => 'camsi', 'CSS0007556' => 'camsi', 'CSS0008532' => 'camsi', 'CSS0009709' => 'camsi', 'CSS0010486' => 'camsi', 'CSS0016768' => 'camsi', 'CSS0023512' => 'camsi', 'CSS0025341' => 'camsi', 'CSS0027999' => 'camsi', 'CSS0028944' => 'camsi', 'CSS0032292' => 'camsi', 'CSS0032464' => 'camsi', 'CSS0037153' => 'camsi', 'CSS0039256' => 'camsi', 'CSS0048392' => 'camsi', 'CSS0050458' => 'camsi', 'DCAR_004224' => 'dca', 'DCAR_006147' => 'dca', 'DCAR_006465' => 'dca', 'DCAR_008159' => 'dca', 'DCAR_012164' => 'dca', 'DCAR_019764' => 'dca', 'Dinv05418' => 'din', 'Dinv10839' => 'din', 'Dinv12521' => 'din', 'Dinv13900' => 'din', 'Dinv29426' => 'din', 'Duzib150G0263' => 'dzi', 'Duzib168G1178' => 'dzi', 'Duzib168G1924' => 'dzi', 'Duzib170G0299' => 'dzi', 'Duzib170G0813' => 'dzi', 'Duzib235G1128' => 'dzi', 'Duzib248G1060' => 'dzi', 'ECA232G1910' => 'eca', 'ECA233G4621' => 'eca', 'ECA238G1216' => 'eca', 'ECA238G1784' => 'eca', 'ECA248G1242' => 'eca', 'EL10Ac8g20071' => 'bvu', 'EL10Ac9g21086' => 'bvu', 'EL10Ac9g22407' => 'bvu', 'EL10Ac9g22412' => 'bvu', 'Eucgr.A01119' => 'egr', 'Eucgr.E04043' => 'egr', 'Eucgr.J00428' => 'egr', 'Eucgr.J00958' => 'egr', 'FAN11G3091' => 'fan', 'FAN11G3651' => 'fan', 'FAN16G2566' => 'fan', 'FAN21G3155' => 'fan', 'FAN21G3400' => 'fan', 'FAN21G3543' => 'fan', 'FAN25G0234' => 'fan', 'FAN25G1422' => 'fan', 'FAN25G3392' => 'fan', 'FvH4_3g01940' => 'fve', 'FvH4_3g29870' => 'fve', 'FvH4_3g33680' => 'fve', 'Glyma.09G004200' => 'gma', 'Glyma.11G151288' => 'gma', 'Glyma.11G189100' => 'gma', 'Glyma.12G072500' => 'gma', 'Glyma.12G085500' => 'gma', 'Glyma.12G181800' => 'gma', 'Glyma.12G193000' => 'gma', 'Glyma.13G309300' => 'gma', 'Glyma.13G319000' => 'gma', 'Glyma.17G012600' => 'gma', 'Gohir.A06G148600' => 'ghi', 'Gohir.A07G115800' => 'ghi', 'Gohir.A08G003600' => 'ghi', 'Gohir.A09G093300' => 'ghi', 'Gohir.A09G105400' => 'ghi', 'Gohir.A09G105500' => 'ghi', 'Gohir.D06G154600' => 'ghi', 'Gohir.D07G120200' => 'ghi', 'Gohir.D08G013900' => 'ghi', 'Gohir.D09G093100' => 'ghi', 'Gohir.D09G102200' => 'ghi', 'Gohir.D09G102300' => 'ghi', 'Gorai.001G129400' => 'gra', 'Gorai.004G008200' => 'gra', 'Gorai.006G109800' => 'gra', 'Gorai.006G119500' => 'gra', 'Gorai.006G121300' => 'gra', 'Gorai.010G180700' => 'gra', 'GSVIVG01012716001' => 'vvi', 'GSVIVG01025118001' => 'vvi', 'GSVIVG01030439001' => 'vvi', 'GSVIVG01031397001' => 'vvi', 'HanXRQChr01g0004201' => 'han', 'HanXRQChr02g0054941' => 'han', 'HanXRQChr05g0141811' => 'han', 'HanXRQChr07g0197751' => 'han', 'HanXRQChr11g0346691' => 'han', 'HanXRQChr13g0396971' => 'han', 'HanXRQChr14g0432951' => 'han', 'HanXRQChr14g0452001' => 'han', 'HanXRQChr15g0496681' => 'han', 'HanXRQChr17g0557491' => 'han', 'HanXRQChr17g0557501' => 'han', 'Haze_06809' => 'cav', 'Haze_12852' => 'cav', 'Haze_15850' => 'cav', 'Haze_23446' => 'cav', 'Haze_23942' => 'cav', 'Haze_23943' => 'cav', 'Hma1.2p1_0091F.1_g046450' => 'hma', 'Hma1.2p1_0128F.1_g059910' => 'hma', 'Hma1.2p1_0249F.1_g102260' => 'hma', 'Hma1.2p1_0453F.1_g156190' => 'hma', 'Hma1.2p1_0695F.1_g204380' => 'hma', 'Hma1.2p1_0749F.1_g212650' => 'hma', 'Hma1.2p1_2156F.1_g315420' => 'hma', 'Hma1.2p1_2686F.1_g326940' => 'hma', 'HPP92_006428' => 'vpl', 'HPP92_012069' => 'vpl', 'HPP92_014129' => 'vpl', 'HPP92_014133' => 'vpl', 'HPP92_017315' => 'vpl', 'HPP92_026445' => 'vpl', 'HPP92_026446' => 'vpl', 'Hund00774' => 'sun', 'Hund07682' => 'sun', 'Hund21413' => 'sun', 'Hund23462' => 'sun', 'Hund23463' => 'sun', 'Lalb_Chr03g0027911' => 'lal', 'Lalb_Chr13g0304271' => 'lal', 'Lalb_Chr19g0137471' => 'lal', 'Lalb_Chr22g0350651' => 'lal', 'Lalb_Chr24g0395151' => 'lal', 'Lj1A1231T40' => 'lonja', 'Lj1A221T48' => 'lonja', 'Lj1C924T12' => 'lonja', 'Lj2C993G6' => 'lonja', 'Lj3g0005790' => 'lja', 'Lj3g0015432' => 'lja', 'Lj3g0017722' => 'lja', 'Lj3g0018497' => 'lja', 'Lj4g0025071' => 'lja', 'Lsat_1_v5_gn_1_129680' => 'lsa', 'Lsat_1_v5_gn_2_25321' => 'lsa', 'Lsat_1_v5_gn_2_95461' => 'lsa', 'Lsat_1_v5_gn_4_159620' => 'lsa', 'Lsat_1_v5_gn_6_41301' => 'lsa', 'Lsat_1_v5_gn_6_74660' => 'lsa', 'Lsat_1_v5_gn_7_11520' => 'lsa', 'Lsat_1_v5_gn_9_67680' => 'lsa', 'Manes.04G008300' => 'mes', 'Manes.04G008400' => 'mes', 'Manes.04G026500' => 'mes', 'Manes.10G135300' => 'mes', 'Manes.11G157300' => 'mes', 'Manes.12G074000' => 'mes', 'Manes.16G006200' => 'mes', 'Manes.17G026400' => 'mes', 'Mapoly0024s0086' => 'mpo', 'Mapoly0024s0087' => 'mpo', 'Mapoly0071s0057' => 'mpo', 'Mapoly0204s0012' => 'mpo', 'MBI04_g37681_MAGBIO' => 'mbi', 'MBI05_g17779_MAGBIO' => 'mbi', 'MBI12_g31184_MAGBIO' => 'mbi', 'MBI17_g11083_MAGBIO' => 'mbi', 'MBI18_g03883_MAGBIO' => 'mbi', 'MBI18_g28940_MAGBIO' => 'mbi', 'MCO01G690' => 'mco', 'MD03G1109900' => 'mdo', 'MD03G1134800' => 'mdo', 'MD05G1348000' => 'mdo', 'MD10G1322400' => 'mdo', 'MD11G1123300' => 'mdo', 'MD11G1157600' => 'mdo', 'Medtr2g084875' => 'mtr', 'Medtr2g088130' => 'mtr', 'Medtr4g055310' => 'mtr', 'Medtr4g061070' => 'mtr', 'Medtr4g132250' => 'mtr', 'MELO3C004795.2' => 'cme', 'MELO3C004797.2' => 'cme', 'MELO3C007396.2' => 'cme', 'MELO3C019277.2' => 'cme', 'MELO3C021449.2' => 'cme', 'MELO3C025736.2' => 'cme', 'Migut.D02175' => 'egut', 'Migut.H01573' => 'egut', 'Migut.M01327' => 'egut', 'Migut.N02513' => 'egut', 'MSTRG.14638' => 'ama', 'MSTRG.18632' => 'ama', 'MSTRG.7203' => 'ama', 'Nitab4.5_0000533g0140' => 'nta', 'Nitab4.5_0000888g0150' => 'nta', 'Nitab4.5_0001453g0040' => 'nta', 'Nitab4.5_0002827g0090' => 'nta', 'Nitab4.5_0003082g0040' => 'nta', 'Nitab4.5_0007799g0040' => 'nta', 'Nitab4.5_0008983g0010' => 'nta', 'Nitab4.5_0009017g0020' => 'nta', 'Nn1g02132' => 'nnu', 'Nn1g03492' => 'nnu', 'Nn1g03493' => 'nnu', 'Nn1g03494' => 'nnu', 'Nn1g07164' => 'nnu', 'Nn1g07291' => 'nnu', 'Nn2g10655' => 'nnu', 'Nn2g11652' => 'nnu', 'Nn2g14008' => 'nnu', 'Nn3g17476' => 'nnu', 'Nn3g17477' => 'nnu', 'Nn4g22370' => 'nnu', 'Nn4g25255' => 'nnu', 'Nn5g27755' => 'nnu', 'Nn6g34260' => 'nnu', 'Nn6g35041' => 'nnu', 'Oeu005924.1' => 'oeu', 'Oeu008383.1' => 'oeu', 'Oeu014928.1' => 'oeu', 'Oeu019889.1' => 'oeu', 'Oeu022271.1' => 'oeu', 'Oeu025271.1' => 'oeu', 'Oeu036302.1' => 'oeu', 'Oeu044100.1' => 'oeu', 'Os01g0528300' => 'osa', 'Os03g0286200' => 'osa', 'Os04g0406600' => 'osa', 'Os07g0512000' => 'osa', 'Os07g0694600' => 'osa', 'Os08g0411000' => 'osa', 'Os09g0565700' => 'osa', 'Os09g0566050' => 'osa', 'Os10g0523700' => 'osa', 'Peaxi162Scf00002g00514' => 'pax', 'Peaxi162Scf00047g01817' => 'pax', 'Peaxi162Scf00114g00001' => 'pax', 'Peaxi162Scf00147g00613' => 'pax', 'Peaxi162Scf00389g00425' => 'pax', 'PGR042G1139' => 'pgr', 'PGR042G3273' => 'pgr', 'PGR102G2180' => 'pgr', 'PGR119G0234' => 'pgr', 'PGR119G0668' => 'pgr', 'PGSC0003DMG400007122' => 'stu', 'PGSC0003DMG400016478' => 'stu', 'PGSC0003DMG400025374' => 'stu', 'PGSC0003DMG400026536' => 'stu', 'Phvul.003G079600' => 'pvu', 'Phvul.005G115600' => 'pvu', 'Phvul.005G127100' => 'pvu', 'Phvul.006G149500' => 'pvu', 'Phvul.006G149600' => 'pvu', 'Phvul.011G071800' => 'pvu', 'Phvul.011G090400' => 'pvu', 'Potri.004G013400' => 'ptr', 'Potri.004G188100' => 'ptr', 'Potri.008G195500' => 'ptr', 'Potri.009G148800' => 'ptr', 'Potri.011G004700' => 'ptr', 'Pp3c17_22810' => 'ppa', 'Pp3c18_4480' => 'ppa', 'Pp3c19_13030' => 'ppa', 'Pp3c1_33620' => 'ppa', 'Pp3c2_9380' => 'ppa', 'PRCOL_00001023' => 'pco', 'Prupe.3G216300' => 'ppe', 'Prupe.4G019500' => 'ppe', 'Prupe.6G092500' => 'ppe', 'Prupe.6G119200' => 'ppe', 'Psat0s1945g0080' => 'psa', 'Psat0s4167g0040' => 'psa', 'Psat1g185800' => 'psa', 'Psat4g006440' => 'psa', 'Psat4g006480' => 'psa', 'Psat4g168120' => 'psa', 'Psat5g255680' => 'psa', 'Psat5g261760' => 'psa', 'Psat7g222120' => 'psa', 'PSO063G7252' => 'pso', 'PSO170G4778' => 'pso', 'PSO210G2249' => 'pso', 'PSO339G2411' => 'pso', 'PSO339G2457' => 'pso', 'PSO339G2854' => 'pso', 'PSO339G4288' => 'pso', 'PSO339G4615' => 'pso', 'PSO384G2796' => 'pso', 'PSO384G2940' => 'pso', 'PSO384G4227' => 'pso', 'PSO478G1425' => 'pso', 'PSO541G3863' => 'pso', 'PSO675G0507' => 'pso', 'PSO782G0338' => 'pso', 'PSO832G0644' => 'pso', 'QL01p013664' => 'qlo', 'QL01p036598' => 'qlo', 'QL05p072984' => 'qlo', 'QL08p005768' => 'qlo', 'QL08p032743' => 'qlo', 'QL93p0073_0439' => 'qlo', 'QL93p0073_0444' => 'qlo', 'RcHm_v2.0_Chr5g0002851' => 'rch', 'RcHm_v2.0_Chr5g0055201' => 'rch', 'RcHm_v2.0_Chr5g0061191' => 'rch', 'RcHm_v2.0_Chr7g0203231' => 'rch', 'Rhsim01G0208100' => 'rsi', 'Rhsim01G0208200' => 'rsi', 'Rhsim02G0106500' => 'rsi', 'Rhsim03G0107900' => 'rsi', 'Rhsim06G0163400' => 'rsi', 'Rhsim13G0105200' => 'rsi', 'Sabra04G0006300' => 'sbr', 'Sabra04G0127000' => 'sbr', 'Sabra08G0148700' => 'sbr', 'Sabra09G0117400' => 'sbr', 'SalBow1G3326' => 'sbo', 'SalBow3G3228' => 'sbo', 'SalBow6G1634' => 'sbo', 'SalBow6G3603' => 'sbo', 'SalBow6G5266' => 'sbo', 'SalBow7G2265' => 'sbo', 'SalBow8G0850' => 'sbo', 'SalBow8G2592' => 'sbo', 'Sc05g0009240' => 'sci', 'Sc12g0002300' => 'sci', 'Sc21g0000100' => 'sci', 'Sc21g0004720' => 'sci', 'Sed0002949' => 'sed', 'Sed0004114' => 'sed', 'Sed0004306' => 'sed', 'Sed0006172' => 'sed', 'Sed0008413' => 'sed', 'Sed0013809' => 'sed', 'Sed0019556' => 'sed', 'SEGI_03570' => 'sgi', 'SEGI_07859' => 'sgi', 'SEGI_15042' => 'sgi', 'SEGI_16263' => 'sgi', 'SEGI_16552' => 'sgi', 'SEGI_24331' => 'sgi', 'SEGI_27316' => 'sgi', 'SEGI_29521' => 'sgi', 'SEGI_41342' => 'sgi', 'SGA_v2.0_scaffold27G11617' => 'sas', 'SGA_v2.0_scaffold316G48428' => 'sas', 'SGA_v2.0_scaffold49G18261' => 'sas', 'SGA_v2.0_scaffold7G03831' => 'sas', 'SGA_v2.0_scaffold93G28359' => 'sas', 'SHI02210' => 'shi', 'SHI06028' => 'shi', 'SHI06321' => 'shi', 'SMO111G0012' => 'smo', 'SMO228G0080' => 'smo', 'SMO356G0756' => 'smo', 'Solyc02g080620.3' => 'sly', 'Solyc06g074530.1' => 'sly', 'Solyc11g066890.1' => 'sly', 'Solyc11g072520.3' => 'sly', 'Sopen02g025330' => 'spe', 'Sopen06g031000' => 'spe', 'Sopen09g008240' => 'spe', 'Sopen09g025210' => 'spe', 'Sopen11g026600' => 'spe', 'Sopen11g030170' => 'spe', 'Sp1g10420' => 'spa', 'Sp3g06570' => 'spa', 'Sp4g10660' => 'spa', 'Sp5g16460' => 'spa', 'Sp6g22710' => 'spa', 'TAR365G0112' => 'tar', 'TAR369G0717' => 'tar', 'TAR374G0976' => 'tar', 'TAR623G1128' => 'tar', 'TAR626G1937' => 'tar', 'TAR627G0123' => 'tar', 'TAR628G0305' => 'tar', 'TAR636G1176' => 'tar', 'TAR636G2442' => 'tar', 'THA.LOC104800556' => 'tha', 'THA.LOC104809501' => 'tha', 'THA.LOC104815126' => 'tha', 'THA.LOC104815732' => 'tha', 'THA.LOC104823528' => 'tha', 'Thecc.02G365600' => 'tca', 'Thecc.06G222300' => 'tca', 'Thecc.09G261800' => 'tca', 'Thecc.09G291400' => 'tca', 'Thhalv10003028m.g' => 'esa', 'Thhalv10007886m.g' => 'esa', 'Thhalv10016085m.g' => 'esa', 'Thhalv10016681m.g' => 'esa', 'Thhalv10020951m.g' => 'esa', 'TPR.G15598' => 'tpr', 'TPR.G29305' => 'tpr', 'TPR.G32395' => 'tpr', 'TPR.G36998' => 'tpr', 'TPR.G4227' => 'tpr', 'TWI18G1433' => 'twi', 'TWI31G0755' => 'twi', 'TWI38G0912' => 'twi', 'TWI75G1097' => 'twi', 'TWI75G1619' => 'twi', 'TWI79G1336' => 'twi', 'unitig_0.g943' => 'ugi', 'unitig_0.g944' => 'ugi', 'unitig_22.g6646' => 'ugi', 'unitig_37.g12681' => 'ugi', 'unitig_8.g3290' => 'ugi', 'vmacro03278' => 'vma', 'vmacro12197' => 'vma', 'vmacro14478' => 'vma', 'vmacro15787' => 'vma', 'vmacro15789' => 'vma', 'vmacro15790' => 'vma', 'vmacro15806' => 'vma', 'vmacro22907' => 'vma', 'vmacro22908' => 'vma', 'vmacro22909' => 'vma', 'vmacro23108' => 'vma', 'VMungo0540G0540' => 'vmu', 'VMungo0540G2468' => 'vmu', 'VMungo1080G0390' => 'vmu', 'VMungo1080G1165' => 'vmu', 'VMungo1127G0170' => 'vmu', 'VMungo1127G2099' => 'vmu', 'VMungo1215G3013' => 'vmu', 'Zm00001eb013110' => 'zma', 'Zm00001eb084260' => 'zma', 'Zm00001eb096110' => 'zma', 'Zm00001eb217510' => 'zma', 'Zm00001eb322550' => 'zma', 'Zm00001eb390770' => 'zma', 'Zm00001eb397170' => 'zma', 'Zm00001eb404610' => 'zma', 'Zm00001eb421790' => 'zma' ) $gf_id = 'HOM05D000911' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000911' ) $data_identifier = 'HOM05D000911' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 16, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 5, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 6, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 8, 'nnu' => (int) 16, 'oeu' => (int) 8, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 5, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 16, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421790' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000911', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27780' => 'bna', 'A03p35380' => 'bna', 'A04p21160' => 'bna', 'A05p40570' => 'bna', 'A06p26900' => 'bna', 'A08p33230' => 'bna', 'A09p65960' => 'bna', 'A10p18290' => 'bna', 'Aa31LG1G12990' => 'aar', 'Aa31LG1G2980' => 'aar', 'Aa31LG4G14320' => 'aar', 'Aa31LG7G11800' => 'aar', 'Aa31sc36G50' => 'aar', 'Aa31sc36G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3721' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5459' => 'aag', 'Actinidia03028' => 'ach', 'Actinidia03753' => 'ach', 'Actinidia04187' => 'ach', 'Actinidia05509' => 'ach', 'Actinidia24180' => 'ach', 'Actinidia26906' => 'ach', 'Actinidia37097' => 'ach', 'Actinidia38249' => 'ach', 'Ah.01g003470' => 'amhyb', 'Ah.01g004580' => 'amhyb', 'Ah.01g014850' => 'amhyb', 'Ah.01g016830' => 'amhyb', 'Ah.14g088000' => 'amhyb', 'AL1G22980' => 'aly', 'AL3G18990' => 'aly', 'AL4G22440' => 'aly', 'AL4G33180' => 'aly', 'AL5G22920' => 'aly', 'AL6G33660' => 'aly', 'AL8G20720' => 'aly', 'Aqoxy1G00935' => 'aox', 'Aqoxy1G02094' => 'aox', 'Aqoxy2G01239' => 'aox', 'Aqoxy4G01870' => 'aox', 'Aqoxy7G00450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.36ZVTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71EM27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5D6C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH3WRE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3NCM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RIM768' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YB5YRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z36GDV' => 'arhy', 'AT1G08250' => 'ath', 'AT1G11790' => 'ath', 'AT2G27820' => 'ath', 'AT3G07630' => 'ath', 'AT3G44720' => 'ath', 'AT5G22630' => 'ath', 'ATR0693G304' => 'atr', 'ATR0794G109' => 'atr', 'ATR0820G120' => 'atr', 'ATR1159G064' => 'atr', 'Atru.chr10.2239' => 'acertr', 'Atru.chr3.3371' => 'acertr', 'Atru.chr6.3202' => 'acertr', 'AUR62006499' => 'cqu', 'AUR62012718' => 'cqu', 'AUR62021938' => 'cqu', 'AUR62023932' => 'cqu', 'AUR62025034' => 'cqu', 'AUR62025035' => 'cqu', 'AUR62038307' => 'cqu', 'AUR62043466' => 'cqu', 'BcaB02g10748' => 'bca', 'BcaB03g13231' => 'bca', 'BcaB03g14689' => 'bca', 'BcaB05g22716' => 'bca', 'BcaB06g28172' => 'bca', 'BcaB08g36413' => 'bca', 'BcaC01g02186' => 'bca', 'BcaC01g04272' => 'bca', 'BcaC02g08080' => 'bca', 'BcaC02g08227' => 'bca', 'BcaC03g13901' => 'bca', 'BcaC04g19593' => 'bca', 'BcaC04g20874' => 'bca', 'BcaC05g29557' => 'bca', 'BcaC06g35505' => 'bca', 'BcaC07g41954' => 'bca', 'BcaC07g41955' => 'bca', 'BcaC07g41956' => 'bca', 'BcaC07g42519' => 'bca', 'BcaC07g42520' => 'bca', 'BcaC07g42523' => 'bca', 'BcaC07g42524' => 'bca', 'BcaC07g42525' => 'bca', 'BcaC08g47480' => 'bca', 'BcaC08g47481' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00530' => 'bna', 'BolC2t07178H' => 'bol', 'BolC3t16567H' => 'bol', 'BolC4t27234H' => 'bol', 'BolC5t29728H' => 'bol', 'BolC5t34622H' => 'bol', 'BolC6t40321H' => 'bol', 'BolC7t42028H' => 'bol', 'BolC8t49125H' => 'bol', 'BolC8t52538H' => 'bol', 'BolC8t52539H' => 'bol', 'BolC9t56681H' => 'bol', 'BolC9t58266H' => 'bol', 'BolSC21t60294H' => 'bol', 'BraA02t05670Z' => 'bra', 'BraA03t12716Z' => 'bra', 'BraA04t17685Z' => 'bra', 'BraA05t22788Z' => 'bra', 'BraA06t24032Z' => 'bra', 'BraA06t25625Z' => 'bra', 'BraA07t27930Z' => 'bra', 'BraA08t35242Z' => 'bra', 'BraA09t38609Z' => 'bra', 'BraA10t43905Z' => 'bra', 'C02p11060' => 'bna', 'C03p42990' => 'bna', 'C03p67310' => 'bna', 'C04p56990' => 'bna', 'C04p58660' => 'bna', 'C05p09890' => 'bna', 'C05p59680' => 'bna', 'C06p19830' => 'bna', 'C06p53040' => 'bna', 'C07p15230' => 'bna', 'C08p50070' => 'bna', 'C08p50090' => 'bna', 'C09p38330' => 'bna', 'C09p53940' => 'bna', 'CAN.G1014.1' => 'can', 'CAN.G644.30' => 'can', 'CAN.G84.47' => 'can', 'CAN.G919.8' => 'can', 'CANSAT54G0113' => 'cansat', 'CANSAT54G1286' => 'cansat', 'CANSAT64G1020' => 'cansat', 'CARHR008080' => 'chi', 'CARHR008090' => 'chi', 'CARHR012130' => 'chi', 'CARHR038390' => 'chi', 'CARHR082330' => 'chi', 'CARHR120520' => 'chi', 'CARHR151470' => 'chi', 'CARHR190950' => 'chi', 'Carub.0001s0760' => 'cru', 'Carub.0001s1146' => 'cru', 'Carub.0003s0721' => 'cru', 'Carub.0004s0858' => 'cru', 'Carub.0005s1040' => 'cru', 'Carub.0006s2035' => 'cru', 'Carub.0015s0005' => 'cru', 'Ca_01607_v3' => 'car', 'Ca_01677_v3' => 'car', 'Ca_06087_v3' => 'car', 'Ca_19238_v3' => 'car', 'Ca_19373_v3' => 'car', 'Ca_21079_v3' => 'car', 'CBR_g54016' => 'cbr', 'CBR_g54018' => 'cbr', 'CBR_g54020' => 'cbr', 'Cc01_g09780' => 'ccan', 'Cc01_g11680' => 'ccan', 'Cc02_g15610' => 'ccan', 'Cc05_g04350' => 'ccan', 'Cc09_g01580' => 'ccan', 'CDE01G0795' => 'cde', 'CDE02G2024' => 'cde', 'CDE02G2260' => 'cde', 'CDE02G4561' => 'cde', 'CDE05G2733' => 'cde', 'CDE05G3422' => 'cde', 'CDE06G2003' => 'cde', 'CDE08G0576' => 'cde', 'CDE09G0048' => 'cde', 'CDE11G0805' => 'cde', 'Cfa003644' => 'cfa', 'Cfa006290' => 'cfa', 'Cfa010080' => 'cfa', 'Cfa011376' => 'cfa', 'Cfa011576' => 'cfa', 'Cfa011577' => 'cfa', 'Cfa014389' => 'cfa', 'Ciclev10006044m.g' => 'ccl', 'Ciclev10006954m.g' => 'ccl', 'Ciclev10015131m.g' => 'ccl', 'Ciclev10015580m.g' => 'ccl', 'Ciclev10028359m.g' => 'ccl', 'Ciclev10028573m.g' => 'ccl', 'CiPaw.03G159300' => 'cil', 'CiPaw.04G115100' => 'cil', 'CiPaw.09G092800' => 'cil', 'CiPaw.10G071800' => 'cil', 'CiPaw.13G105800' => 'cil', 'CiPaw.13G141000' => 'cil', 'CiPaw.14G103400' => 'cil', 'ClCG01G012700' => 'cla', 'ClCG01G012720' => 'cla', 'ClCG01G021920' => 'cla', 'ClCG02G008870' => 'cla', 'ClCG02G020840' => 'cla', 'ClCG02G021930' => 'cla', 'COL.COLO4_19302' => 'col', 'COL.COLO4_25262' => 'col', 'COL.COLO4_31788' => 'col', 'Cpa.g.c34684' => 'cpa', 'Cpa.g.c36520.1' => 'cpa', 'Cpa.g.c45626' => 'cpa', 'Cpa.g.sc121.17' => 'cpa', 'Cpa.g.sc13.22' => 'cpa', 'Cpa.g.sc87.88' => 'cpa', 'Cre06.g261800' => 'cre', 'CsaV3_1G014500' => 'csa', 'CsaV3_1G014510' => 'csa', 'CsaV3_2G034880' => 'csa', 'CsaV3_6G014760' => 'csa', 'CsaV3_6G021500' => 'csa', 'CsaV3_6G048980' => 'csa', 'CSS0002511' => 'camsi', 'CSS0007556' => 'camsi', 'CSS0008532' => 'camsi', 'CSS0009709' => 'camsi', 'CSS0010486' => 'camsi', 'CSS0016768' => 'camsi', 'CSS0023512' => 'camsi', 'CSS0025341' => 'camsi', 'CSS0027999' => 'camsi', 'CSS0028944' => 'camsi', 'CSS0032292' => 'camsi', 'CSS0032464' => 'camsi', 'CSS0037153' => 'camsi', 'CSS0039256' => 'camsi', 'CSS0048392' => 'camsi', 'CSS0050458' => 'camsi', 'DCAR_004224' => 'dca', 'DCAR_006147' => 'dca', 'DCAR_006465' => 'dca', 'DCAR_008159' => 'dca', 'DCAR_012164' => 'dca', 'DCAR_019764' => 'dca', 'Dinv05418' => 'din', 'Dinv10839' => 'din', 'Dinv12521' => 'din', 'Dinv13900' => 'din', 'Dinv29426' => 'din', 'Duzib150G0263' => 'dzi', 'Duzib168G1178' => 'dzi', 'Duzib168G1924' => 'dzi', 'Duzib170G0299' => 'dzi', 'Duzib170G0813' => 'dzi', 'Duzib235G1128' => 'dzi', 'Duzib248G1060' => 'dzi', 'ECA232G1910' => 'eca', 'ECA233G4621' => 'eca', 'ECA238G1216' => 'eca', 'ECA238G1784' => 'eca', 'ECA248G1242' => 'eca', 'EL10Ac8g20071' => 'bvu', 'EL10Ac9g21086' => 'bvu', 'EL10Ac9g22407' => 'bvu', 'EL10Ac9g22412' => 'bvu', 'Eucgr.A01119' => 'egr', 'Eucgr.E04043' => 'egr', 'Eucgr.J00428' => 'egr', 'Eucgr.J00958' => 'egr', 'FAN11G3091' => 'fan', 'FAN11G3651' => 'fan', 'FAN16G2566' => 'fan', 'FAN21G3155' => 'fan', 'FAN21G3400' => 'fan', 'FAN21G3543' => 'fan', 'FAN25G0234' => 'fan', 'FAN25G1422' => 'fan', 'FAN25G3392' => 'fan', 'FvH4_3g01940' => 'fve', 'FvH4_3g29870' => 'fve', 'FvH4_3g33680' => 'fve', 'Glyma.09G004200' => 'gma', 'Glyma.11G151288' => 'gma', 'Glyma.11G189100' => 'gma', 'Glyma.12G072500' => 'gma', 'Glyma.12G085500' => 'gma', 'Glyma.12G181800' => 'gma', 'Glyma.12G193000' => 'gma', 'Glyma.13G309300' => 'gma', 'Glyma.13G319000' => 'gma', 'Glyma.17G012600' => 'gma', 'Gohir.A06G148600' => 'ghi', 'Gohir.A07G115800' => 'ghi', 'Gohir.A08G003600' => 'ghi', 'Gohir.A09G093300' => 'ghi', 'Gohir.A09G105400' => 'ghi', 'Gohir.A09G105500' => 'ghi', 'Gohir.D06G154600' => 'ghi', 'Gohir.D07G120200' => 'ghi', 'Gohir.D08G013900' => 'ghi', 'Gohir.D09G093100' => 'ghi', 'Gohir.D09G102200' => 'ghi', 'Gohir.D09G102300' => 'ghi', 'Gorai.001G129400' => 'gra', 'Gorai.004G008200' => 'gra', 'Gorai.006G109800' => 'gra', 'Gorai.006G119500' => 'gra', 'Gorai.006G121300' => 'gra', 'Gorai.010G180700' => 'gra', 'GSVIVG01012716001' => 'vvi', 'GSVIVG01025118001' => 'vvi', 'GSVIVG01030439001' => 'vvi', 'GSVIVG01031397001' => 'vvi', 'HanXRQChr01g0004201' => 'han', 'HanXRQChr02g0054941' => 'han', 'HanXRQChr05g0141811' => 'han', 'HanXRQChr07g0197751' => 'han', 'HanXRQChr11g0346691' => 'han', 'HanXRQChr13g0396971' => 'han', 'HanXRQChr14g0432951' => 'han', 'HanXRQChr14g0452001' => 'han', 'HanXRQChr15g0496681' => 'han', 'HanXRQChr17g0557491' => 'han', 'HanXRQChr17g0557501' => 'han', 'Haze_06809' => 'cav', 'Haze_12852' => 'cav', 'Haze_15850' => 'cav', 'Haze_23446' => 'cav', 'Haze_23942' => 'cav', 'Haze_23943' => 'cav', 'Hma1.2p1_0091F.1_g046450' => 'hma', 'Hma1.2p1_0128F.1_g059910' => 'hma', 'Hma1.2p1_0249F.1_g102260' => 'hma', 'Hma1.2p1_0453F.1_g156190' => 'hma', 'Hma1.2p1_0695F.1_g204380' => 'hma', 'Hma1.2p1_0749F.1_g212650' => 'hma', 'Hma1.2p1_2156F.1_g315420' => 'hma', 'Hma1.2p1_2686F.1_g326940' => 'hma', 'HPP92_006428' => 'vpl', 'HPP92_012069' => 'vpl', 'HPP92_014129' => 'vpl', 'HPP92_014133' => 'vpl', 'HPP92_017315' => 'vpl', 'HPP92_026445' => 'vpl', 'HPP92_026446' => 'vpl', 'Hund00774' => 'sun', 'Hund07682' => 'sun', 'Hund21413' => 'sun', 'Hund23462' => 'sun', 'Hund23463' => 'sun', 'Lalb_Chr03g0027911' => 'lal', 'Lalb_Chr13g0304271' => 'lal', 'Lalb_Chr19g0137471' => 'lal', 'Lalb_Chr22g0350651' => 'lal', 'Lalb_Chr24g0395151' => 'lal', 'Lj1A1231T40' => 'lonja', 'Lj1A221T48' => 'lonja', 'Lj1C924T12' => 'lonja', 'Lj2C993G6' => 'lonja', 'Lj3g0005790' => 'lja', 'Lj3g0015432' => 'lja', 'Lj3g0017722' => 'lja', 'Lj3g0018497' => 'lja', 'Lj4g0025071' => 'lja', 'Lsat_1_v5_gn_1_129680' => 'lsa', 'Lsat_1_v5_gn_2_25321' => 'lsa', 'Lsat_1_v5_gn_2_95461' => 'lsa', 'Lsat_1_v5_gn_4_159620' => 'lsa', 'Lsat_1_v5_gn_6_41301' => 'lsa', 'Lsat_1_v5_gn_6_74660' => 'lsa', 'Lsat_1_v5_gn_7_11520' => 'lsa', 'Lsat_1_v5_gn_9_67680' => 'lsa', 'Manes.04G008300' => 'mes', 'Manes.04G008400' => 'mes', 'Manes.04G026500' => 'mes', 'Manes.10G135300' => 'mes', 'Manes.11G157300' => 'mes', 'Manes.12G074000' => 'mes', 'Manes.16G006200' => 'mes', 'Manes.17G026400' => 'mes', 'Mapoly0024s0086' => 'mpo', 'Mapoly0024s0087' => 'mpo', 'Mapoly0071s0057' => 'mpo', 'Mapoly0204s0012' => 'mpo', 'MBI04_g37681_MAGBIO' => 'mbi', 'MBI05_g17779_MAGBIO' => 'mbi', 'MBI12_g31184_MAGBIO' => 'mbi', 'MBI17_g11083_MAGBIO' => 'mbi', 'MBI18_g03883_MAGBIO' => 'mbi', 'MBI18_g28940_MAGBIO' => 'mbi', 'MCO01G690' => 'mco', 'MD03G1109900' => 'mdo', 'MD03G1134800' => 'mdo', 'MD05G1348000' => 'mdo', 'MD10G1322400' => 'mdo', 'MD11G1123300' => 'mdo', 'MD11G1157600' => 'mdo', 'Medtr2g084875' => 'mtr', 'Medtr2g088130' => 'mtr', 'Medtr4g055310' => 'mtr', 'Medtr4g061070' => 'mtr', 'Medtr4g132250' => 'mtr', 'MELO3C004795.2' => 'cme', 'MELO3C004797.2' => 'cme', 'MELO3C007396.2' => 'cme', 'MELO3C019277.2' => 'cme', 'MELO3C021449.2' => 'cme', 'MELO3C025736.2' => 'cme', 'Migut.D02175' => 'egut', 'Migut.H01573' => 'egut', 'Migut.M01327' => 'egut', 'Migut.N02513' => 'egut', 'MSTRG.14638' => 'ama', 'MSTRG.18632' => 'ama', 'MSTRG.7203' => 'ama', 'Nitab4.5_0000533g0140' => 'nta', 'Nitab4.5_0000888g0150' => 'nta', 'Nitab4.5_0001453g0040' => 'nta', 'Nitab4.5_0002827g0090' => 'nta', 'Nitab4.5_0003082g0040' => 'nta', 'Nitab4.5_0007799g0040' => 'nta', 'Nitab4.5_0008983g0010' => 'nta', 'Nitab4.5_0009017g0020' => 'nta', 'Nn1g02132' => 'nnu', 'Nn1g03492' => 'nnu', 'Nn1g03493' => 'nnu', 'Nn1g03494' => 'nnu', 'Nn1g07164' => 'nnu', 'Nn1g07291' => 'nnu', 'Nn2g10655' => 'nnu', 'Nn2g11652' => 'nnu', 'Nn2g14008' => 'nnu', 'Nn3g17476' => 'nnu', 'Nn3g17477' => 'nnu', 'Nn4g22370' => 'nnu', 'Nn4g25255' => 'nnu', 'Nn5g27755' => 'nnu', 'Nn6g34260' => 'nnu', 'Nn6g35041' => 'nnu', 'Oeu005924.1' => 'oeu', 'Oeu008383.1' => 'oeu', 'Oeu014928.1' => 'oeu', 'Oeu019889.1' => 'oeu', 'Oeu022271.1' => 'oeu', 'Oeu025271.1' => 'oeu', 'Oeu036302.1' => 'oeu', 'Oeu044100.1' => 'oeu', 'Os01g0528300' => 'osa', 'Os03g0286200' => 'osa', 'Os04g0406600' => 'osa', 'Os07g0512000' => 'osa', 'Os07g0694600' => 'osa', 'Os08g0411000' => 'osa', 'Os09g0565700' => 'osa', 'Os09g0566050' => 'osa', 'Os10g0523700' => 'osa', 'Peaxi162Scf00002g00514' => 'pax', 'Peaxi162Scf00047g01817' => 'pax', 'Peaxi162Scf00114g00001' => 'pax', 'Peaxi162Scf00147g00613' => 'pax', 'Peaxi162Scf00389g00425' => 'pax', 'PGR042G1139' => 'pgr', 'PGR042G3273' => 'pgr', 'PGR102G2180' => 'pgr', 'PGR119G0234' => 'pgr', 'PGR119G0668' => 'pgr', 'PGSC0003DMG400007122' => 'stu', 'PGSC0003DMG400016478' => 'stu', 'PGSC0003DMG400025374' => 'stu', 'PGSC0003DMG400026536' => 'stu', 'Phvul.003G079600' => 'pvu', 'Phvul.005G115600' => 'pvu', 'Phvul.005G127100' => 'pvu', 'Phvul.006G149500' => 'pvu', 'Phvul.006G149600' => 'pvu', 'Phvul.011G071800' => 'pvu', 'Phvul.011G090400' => 'pvu', 'Potri.004G013400' => 'ptr', 'Potri.004G188100' => 'ptr', 'Potri.008G195500' => 'ptr', 'Potri.009G148800' => 'ptr', 'Potri.011G004700' => 'ptr', 'Pp3c17_22810' => 'ppa', 'Pp3c18_4480' => 'ppa', 'Pp3c19_13030' => 'ppa', 'Pp3c1_33620' => 'ppa', 'Pp3c2_9380' => 'ppa', 'PRCOL_00001023' => 'pco', 'Prupe.3G216300' => 'ppe', 'Prupe.4G019500' => 'ppe', 'Prupe.6G092500' => 'ppe', 'Prupe.6G119200' => 'ppe', 'Psat0s1945g0080' => 'psa', 'Psat0s4167g0040' => 'psa', 'Psat1g185800' => 'psa', 'Psat4g006440' => 'psa', 'Psat4g006480' => 'psa', 'Psat4g168120' => 'psa', 'Psat5g255680' => 'psa', 'Psat5g261760' => 'psa', 'Psat7g222120' => 'psa', 'PSO063G7252' => 'pso', 'PSO170G4778' => 'pso', 'PSO210G2249' => 'pso', 'PSO339G2411' => 'pso', 'PSO339G2457' => 'pso', 'PSO339G2854' => 'pso', 'PSO339G4288' => 'pso', 'PSO339G4615' => 'pso', 'PSO384G2796' => 'pso', 'PSO384G2940' => 'pso', 'PSO384G4227' => 'pso', 'PSO478G1425' => 'pso', 'PSO541G3863' => 'pso', 'PSO675G0507' => 'pso', 'PSO782G0338' => 'pso', 'PSO832G0644' => 'pso', 'QL01p013664' => 'qlo', 'QL01p036598' => 'qlo', 'QL05p072984' => 'qlo', 'QL08p005768' => 'qlo', 'QL08p032743' => 'qlo', 'QL93p0073_0439' => 'qlo', 'QL93p0073_0444' => 'qlo', 'RcHm_v2.0_Chr5g0002851' => 'rch', 'RcHm_v2.0_Chr5g0055201' => 'rch', 'RcHm_v2.0_Chr5g0061191' => 'rch', 'RcHm_v2.0_Chr7g0203231' => 'rch', 'Rhsim01G0208100' => 'rsi', 'Rhsim01G0208200' => 'rsi', 'Rhsim02G0106500' => 'rsi', 'Rhsim03G0107900' => 'rsi', 'Rhsim06G0163400' => 'rsi', 'Rhsim13G0105200' => 'rsi', 'Sabra04G0006300' => 'sbr', 'Sabra04G0127000' => 'sbr', 'Sabra08G0148700' => 'sbr', 'Sabra09G0117400' => 'sbr', 'SalBow1G3326' => 'sbo', 'SalBow3G3228' => 'sbo', 'SalBow6G1634' => 'sbo', 'SalBow6G3603' => 'sbo', 'SalBow6G5266' => 'sbo', 'SalBow7G2265' => 'sbo', 'SalBow8G0850' => 'sbo', 'SalBow8G2592' => 'sbo', 'Sc05g0009240' => 'sci', 'Sc12g0002300' => 'sci', 'Sc21g0000100' => 'sci', 'Sc21g0004720' => 'sci', 'Sed0002949' => 'sed', 'Sed0004114' => 'sed', 'Sed0004306' => 'sed', 'Sed0006172' => 'sed', 'Sed0008413' => 'sed', 'Sed0013809' => 'sed', 'Sed0019556' => 'sed', 'SEGI_03570' => 'sgi', 'SEGI_07859' => 'sgi', 'SEGI_15042' => 'sgi', 'SEGI_16263' => 'sgi', 'SEGI_16552' => 'sgi', 'SEGI_24331' => 'sgi', 'SEGI_27316' => 'sgi', 'SEGI_29521' => 'sgi', 'SEGI_41342' => 'sgi', 'SGA_v2.0_scaffold27G11617' => 'sas', 'SGA_v2.0_scaffold316G48428' => 'sas', 'SGA_v2.0_scaffold49G18261' => 'sas', 'SGA_v2.0_scaffold7G03831' => 'sas', 'SGA_v2.0_scaffold93G28359' => 'sas', 'SHI02210' => 'shi', 'SHI06028' => 'shi', 'SHI06321' => 'shi', 'SMO111G0012' => 'smo', 'SMO228G0080' => 'smo', 'SMO356G0756' => 'smo', 'Solyc02g080620.3' => 'sly', 'Solyc06g074530.1' => 'sly', 'Solyc11g066890.1' => 'sly', 'Solyc11g072520.3' => 'sly', 'Sopen02g025330' => 'spe', 'Sopen06g031000' => 'spe', 'Sopen09g008240' => 'spe', 'Sopen09g025210' => 'spe', 'Sopen11g026600' => 'spe', 'Sopen11g030170' => 'spe', 'Sp1g10420' => 'spa', 'Sp3g06570' => 'spa', 'Sp4g10660' => 'spa', 'Sp5g16460' => 'spa', 'Sp6g22710' => 'spa', 'TAR365G0112' => 'tar', 'TAR369G0717' => 'tar', 'TAR374G0976' => 'tar', 'TAR623G1128' => 'tar', 'TAR626G1937' => 'tar', 'TAR627G0123' => 'tar', 'TAR628G0305' => 'tar', 'TAR636G1176' => 'tar', 'TAR636G2442' => 'tar', 'THA.LOC104800556' => 'tha', 'THA.LOC104809501' => 'tha', 'THA.LOC104815126' => 'tha', 'THA.LOC104815732' => 'tha', 'THA.LOC104823528' => 'tha', 'Thecc.02G365600' => 'tca', 'Thecc.06G222300' => 'tca', 'Thecc.09G261800' => 'tca', 'Thecc.09G291400' => 'tca', 'Thhalv10003028m.g' => 'esa', 'Thhalv10007886m.g' => 'esa', 'Thhalv10016085m.g' => 'esa', 'Thhalv10016681m.g' => 'esa', 'Thhalv10020951m.g' => 'esa', 'TPR.G15598' => 'tpr', 'TPR.G29305' => 'tpr', 'TPR.G32395' => 'tpr', 'TPR.G36998' => 'tpr', 'TPR.G4227' => 'tpr', 'TWI18G1433' => 'twi', 'TWI31G0755' => 'twi', 'TWI38G0912' => 'twi', 'TWI75G1097' => 'twi', 'TWI75G1619' => 'twi', 'TWI79G1336' => 'twi', 'unitig_0.g943' => 'ugi', 'unitig_0.g944' => 'ugi', 'unitig_22.g6646' => 'ugi', 'unitig_37.g12681' => 'ugi', 'unitig_8.g3290' => 'ugi', 'vmacro03278' => 'vma', 'vmacro12197' => 'vma', 'vmacro14478' => 'vma', 'vmacro15787' => 'vma', 'vmacro15789' => 'vma', 'vmacro15790' => 'vma', 'vmacro15806' => 'vma', 'vmacro22907' => 'vma', 'vmacro22908' => 'vma', 'vmacro22909' => 'vma', 'vmacro23108' => 'vma', 'VMungo0540G0540' => 'vmu', 'VMungo0540G2468' => 'vmu', 'VMungo1080G0390' => 'vmu', 'VMungo1080G1165' => 'vmu', 'VMungo1127G0170' => 'vmu', 'VMungo1127G2099' => 'vmu', 'VMungo1215G3013' => 'vmu', 'Zm00001eb013110' => 'zma', 'Zm00001eb084260' => 'zma', 'Zm00001eb096110' => 'zma', 'Zm00001eb217510' => 'zma', 'Zm00001eb322550' => 'zma', 'Zm00001eb390770' => 'zma', 'Zm00001eb397170' => 'zma', 'Zm00001eb404610' => 'zma', 'Zm00001eb421790' => 'zma' ), 'gf_id' => 'HOM05D000911', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000911' ), 'data_identifier' => 'HOM05D000911', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000911', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27780' => 'bna', 'A03p35380' => 'bna', 'A04p21160' => 'bna', 'A05p40570' => 'bna', 'A06p26900' => 'bna', 'A08p33230' => 'bna', 'A09p65960' => 'bna', 'A10p18290' => 'bna', 'Aa31LG1G12990' => 'aar', 'Aa31LG1G2980' => 'aar', 'Aa31LG4G14320' => 'aar', 'Aa31LG7G11800' => 'aar', 'Aa31sc36G50' => 'aar', 'Aa31sc36G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3721' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5459' => 'aag', 'Actinidia03028' => 'ach', 'Actinidia03753' => 'ach', 'Actinidia04187' => 'ach', 'Actinidia05509' => 'ach', 'Actinidia24180' => 'ach', 'Actinidia26906' => 'ach', 'Actinidia37097' => 'ach', 'Actinidia38249' => 'ach', 'Ah.01g003470' => 'amhyb', 'Ah.01g004580' => 'amhyb', 'Ah.01g014850' => 'amhyb', 'Ah.01g016830' => 'amhyb', 'Ah.14g088000' => 'amhyb', 'AL1G22980' => 'aly', 'AL3G18990' => 'aly', 'AL4G22440' => 'aly', 'AL4G33180' => 'aly', 'AL5G22920' => 'aly', 'AL6G33660' => 'aly', 'AL8G20720' => 'aly', 'Aqoxy1G00935' => 'aox', 'Aqoxy1G02094' => 'aox', 'Aqoxy2G01239' => 'aox', 'Aqoxy4G01870' => 'aox', 'Aqoxy7G00450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.36ZVTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71EM27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5D6C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH3WRE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3NCM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RIM768' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YB5YRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z36GDV' => 'arhy', 'AT1G08250' => 'ath', 'AT1G11790' => 'ath', 'AT2G27820' => 'ath', 'AT3G07630' => 'ath', 'AT3G44720' => 'ath', 'AT5G22630' => 'ath', 'ATR0693G304' => 'atr', 'ATR0794G109' => 'atr', 'ATR0820G120' => 'atr', 'ATR1159G064' => 'atr', 'Atru.chr10.2239' => 'acertr', 'Atru.chr3.3371' => 'acertr', 'Atru.chr6.3202' => 'acertr', 'AUR62006499' => 'cqu', 'AUR62012718' => 'cqu', 'AUR62021938' => 'cqu', 'AUR62023932' => 'cqu', 'AUR62025034' => 'cqu', 'AUR62025035' => 'cqu', 'AUR62038307' => 'cqu', 'AUR62043466' => 'cqu', 'BcaB02g10748' => 'bca', 'BcaB03g13231' => 'bca', 'BcaB03g14689' => 'bca', 'BcaB05g22716' => 'bca', 'BcaB06g28172' => 'bca', 'BcaB08g36413' => 'bca', 'BcaC01g02186' => 'bca', 'BcaC01g04272' => 'bca', 'BcaC02g08080' => 'bca', 'BcaC02g08227' => 'bca', 'BcaC03g13901' => 'bca', 'BcaC04g19593' => 'bca', 'BcaC04g20874' => 'bca', 'BcaC05g29557' => 'bca', 'BcaC06g35505' => 'bca', 'BcaC07g41954' => 'bca', 'BcaC07g41955' => 'bca', 'BcaC07g41956' => 'bca', 'BcaC07g42519' => 'bca', 'BcaC07g42520' => 'bca', 'BcaC07g42523' => 'bca', 'BcaC07g42524' => 'bca', 'BcaC07g42525' => 'bca', 'BcaC08g47480' => 'bca', 'BcaC08g47481' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00530' => 'bna', 'BolC2t07178H' => 'bol', 'BolC3t16567H' => 'bol', 'BolC4t27234H' => 'bol', 'BolC5t29728H' => 'bol', 'BolC5t34622H' => 'bol', 'BolC6t40321H' => 'bol', 'BolC7t42028H' => 'bol', 'BolC8t49125H' => 'bol', 'BolC8t52538H' => 'bol', 'BolC8t52539H' => 'bol', 'BolC9t56681H' => 'bol', 'BolC9t58266H' => 'bol', 'BolSC21t60294H' => 'bol', 'BraA02t05670Z' => 'bra', 'BraA03t12716Z' => 'bra', 'BraA04t17685Z' => 'bra', 'BraA05t22788Z' => 'bra', 'BraA06t24032Z' => 'bra', 'BraA06t25625Z' => 'bra', 'BraA07t27930Z' => 'bra', 'BraA08t35242Z' => 'bra', 'BraA09t38609Z' => 'bra', 'BraA10t43905Z' => 'bra', 'C02p11060' => 'bna', 'C03p42990' => 'bna', 'C03p67310' => 'bna', 'C04p56990' => 'bna', 'C04p58660' => 'bna', 'C05p09890' => 'bna', 'C05p59680' => 'bna', 'C06p19830' => 'bna', 'C06p53040' => 'bna', 'C07p15230' => 'bna', 'C08p50070' => 'bna', 'C08p50090' => 'bna', 'C09p38330' => 'bna', 'C09p53940' => 'bna', 'CAN.G1014.1' => 'can', 'CAN.G644.30' => 'can', 'CAN.G84.47' => 'can', 'CAN.G919.8' => 'can', 'CANSAT54G0113' => 'cansat', 'CANSAT54G1286' => 'cansat', 'CANSAT64G1020' => 'cansat', 'CARHR008080' => 'chi', 'CARHR008090' => 'chi', 'CARHR012130' => 'chi', 'CARHR038390' => 'chi', 'CARHR082330' => 'chi', 'CARHR120520' => 'chi', 'CARHR151470' => 'chi', 'CARHR190950' => 'chi', 'Carub.0001s0760' => 'cru', 'Carub.0001s1146' => 'cru', 'Carub.0003s0721' => 'cru', 'Carub.0004s0858' => 'cru', 'Carub.0005s1040' => 'cru', 'Carub.0006s2035' => 'cru', 'Carub.0015s0005' => 'cru', 'Ca_01607_v3' => 'car', 'Ca_01677_v3' => 'car', 'Ca_06087_v3' => 'car', 'Ca_19238_v3' => 'car', 'Ca_19373_v3' => 'car', 'Ca_21079_v3' => 'car', 'CBR_g54016' => 'cbr', 'CBR_g54018' => 'cbr', 'CBR_g54020' => 'cbr', 'Cc01_g09780' => 'ccan', 'Cc01_g11680' => 'ccan', 'Cc02_g15610' => 'ccan', 'Cc05_g04350' => 'ccan', 'Cc09_g01580' => 'ccan', 'CDE01G0795' => 'cde', 'CDE02G2024' => 'cde', 'CDE02G2260' => 'cde', 'CDE02G4561' => 'cde', 'CDE05G2733' => 'cde', 'CDE05G3422' => 'cde', 'CDE06G2003' => 'cde', 'CDE08G0576' => 'cde', 'CDE09G0048' => 'cde', 'CDE11G0805' => 'cde', 'Cfa003644' => 'cfa', 'Cfa006290' => 'cfa', 'Cfa010080' => 'cfa', 'Cfa011376' => 'cfa', 'Cfa011576' => 'cfa', 'Cfa011577' => 'cfa', 'Cfa014389' => 'cfa', 'Ciclev10006044m.g' => 'ccl', 'Ciclev10006954m.g' => 'ccl', 'Ciclev10015131m.g' => 'ccl', 'Ciclev10015580m.g' => 'ccl', 'Ciclev10028359m.g' => 'ccl', 'Ciclev10028573m.g' => 'ccl', 'CiPaw.03G159300' => 'cil', 'CiPaw.04G115100' => 'cil', 'CiPaw.09G092800' => 'cil', 'CiPaw.10G071800' => 'cil', 'CiPaw.13G105800' => 'cil', 'CiPaw.13G141000' => 'cil', 'CiPaw.14G103400' => 'cil', 'ClCG01G012700' => 'cla', 'ClCG01G012720' => 'cla', 'ClCG01G021920' => 'cla', 'ClCG02G008870' => 'cla', 'ClCG02G020840' => 'cla', 'ClCG02G021930' => 'cla', 'COL.COLO4_19302' => 'col', 'COL.COLO4_25262' => 'col', 'COL.COLO4_31788' => 'col', 'Cpa.g.c34684' => 'cpa', 'Cpa.g.c36520.1' => 'cpa', 'Cpa.g.c45626' => 'cpa', 'Cpa.g.sc121.17' => 'cpa', 'Cpa.g.sc13.22' => 'cpa', 'Cpa.g.sc87.88' => 'cpa', 'Cre06.g261800' => 'cre', 'CsaV3_1G014500' => 'csa', 'CsaV3_1G014510' => 'csa', 'CsaV3_2G034880' => 'csa', 'CsaV3_6G014760' => 'csa', 'CsaV3_6G021500' => 'csa', 'CsaV3_6G048980' => 'csa', 'CSS0002511' => 'camsi', 'CSS0007556' => 'camsi', 'CSS0008532' => 'camsi', 'CSS0009709' => 'camsi', 'CSS0010486' => 'camsi', 'CSS0016768' => 'camsi', 'CSS0023512' => 'camsi', 'CSS0025341' => 'camsi', 'CSS0027999' => 'camsi', 'CSS0028944' => 'camsi', 'CSS0032292' => 'camsi', 'CSS0032464' => 'camsi', 'CSS0037153' => 'camsi', 'CSS0039256' => 'camsi', 'CSS0048392' => 'camsi', 'CSS0050458' => 'camsi', 'DCAR_004224' => 'dca', 'DCAR_006147' => 'dca', 'DCAR_006465' => 'dca', 'DCAR_008159' => 'dca', 'DCAR_012164' => 'dca', 'DCAR_019764' => 'dca', 'Dinv05418' => 'din', 'Dinv10839' => 'din', 'Dinv12521' => 'din', 'Dinv13900' => 'din', 'Dinv29426' => 'din', 'Duzib150G0263' => 'dzi', 'Duzib168G1178' => 'dzi', 'Duzib168G1924' => 'dzi', 'Duzib170G0299' => 'dzi', 'Duzib170G0813' => 'dzi', 'Duzib235G1128' => 'dzi', 'Duzib248G1060' => 'dzi', 'ECA232G1910' => 'eca', 'ECA233G4621' => 'eca', 'ECA238G1216' => 'eca', 'ECA238G1784' => 'eca', 'ECA248G1242' => 'eca', 'EL10Ac8g20071' => 'bvu', 'EL10Ac9g21086' => 'bvu', 'EL10Ac9g22407' => 'bvu', 'EL10Ac9g22412' => 'bvu', 'Eucgr.A01119' => 'egr', 'Eucgr.E04043' => 'egr', 'Eucgr.J00428' => 'egr', 'Eucgr.J00958' => 'egr', 'FAN11G3091' => 'fan', 'FAN11G3651' => 'fan', 'FAN16G2566' => 'fan', 'FAN21G3155' => 'fan', 'FAN21G3400' => 'fan', 'FAN21G3543' => 'fan', 'FAN25G0234' => 'fan', 'FAN25G1422' => 'fan', 'FAN25G3392' => 'fan', 'FvH4_3g01940' => 'fve', 'FvH4_3g29870' => 'fve', 'FvH4_3g33680' => 'fve', 'Glyma.09G004200' => 'gma', 'Glyma.11G151288' => 'gma', 'Glyma.11G189100' => 'gma', 'Glyma.12G072500' => 'gma', 'Glyma.12G085500' => 'gma', 'Glyma.12G181800' => 'gma', 'Glyma.12G193000' => 'gma', 'Glyma.13G309300' => 'gma', 'Glyma.13G319000' => 'gma', 'Glyma.17G012600' => 'gma', 'Gohir.A06G148600' => 'ghi', 'Gohir.A07G115800' => 'ghi', 'Gohir.A08G003600' => 'ghi', 'Gohir.A09G093300' => 'ghi', 'Gohir.A09G105400' => 'ghi', 'Gohir.A09G105500' => 'ghi', 'Gohir.D06G154600' => 'ghi', 'Gohir.D07G120200' => 'ghi', 'Gohir.D08G013900' => 'ghi', 'Gohir.D09G093100' => 'ghi', 'Gohir.D09G102200' => 'ghi', 'Gohir.D09G102300' => 'ghi', 'Gorai.001G129400' => 'gra', 'Gorai.004G008200' => 'gra', 'Gorai.006G109800' => 'gra', 'Gorai.006G119500' => 'gra', 'Gorai.006G121300' => 'gra', 'Gorai.010G180700' => 'gra', 'GSVIVG01012716001' => 'vvi', 'GSVIVG01025118001' => 'vvi', 'GSVIVG01030439001' => 'vvi', 'GSVIVG01031397001' => 'vvi', 'HanXRQChr01g0004201' => 'han', 'HanXRQChr02g0054941' => 'han', 'HanXRQChr05g0141811' => 'han', 'HanXRQChr07g0197751' => 'han', 'HanXRQChr11g0346691' => 'han', 'HanXRQChr13g0396971' => 'han', 'HanXRQChr14g0432951' => 'han', 'HanXRQChr14g0452001' => 'han', 'HanXRQChr15g0496681' => 'han', 'HanXRQChr17g0557491' => 'han', 'HanXRQChr17g0557501' => 'han', 'Haze_06809' => 'cav', 'Haze_12852' => 'cav', 'Haze_15850' => 'cav', 'Haze_23446' => 'cav', 'Haze_23942' => 'cav', 'Haze_23943' => 'cav', 'Hma1.2p1_0091F.1_g046450' => 'hma', 'Hma1.2p1_0128F.1_g059910' => 'hma', 'Hma1.2p1_0249F.1_g102260' => 'hma', 'Hma1.2p1_0453F.1_g156190' => 'hma', 'Hma1.2p1_0695F.1_g204380' => 'hma', 'Hma1.2p1_0749F.1_g212650' => 'hma', 'Hma1.2p1_2156F.1_g315420' => 'hma', 'Hma1.2p1_2686F.1_g326940' => 'hma', 'HPP92_006428' => 'vpl', 'HPP92_012069' => 'vpl', 'HPP92_014129' => 'vpl', 'HPP92_014133' => 'vpl', 'HPP92_017315' => 'vpl', 'HPP92_026445' => 'vpl', 'HPP92_026446' => 'vpl', 'Hund00774' => 'sun', 'Hund07682' => 'sun', 'Hund21413' => 'sun', 'Hund23462' => 'sun', 'Hund23463' => 'sun', 'Lalb_Chr03g0027911' => 'lal', 'Lalb_Chr13g0304271' => 'lal', 'Lalb_Chr19g0137471' => 'lal', 'Lalb_Chr22g0350651' => 'lal', 'Lalb_Chr24g0395151' => 'lal', 'Lj1A1231T40' => 'lonja', 'Lj1A221T48' => 'lonja', 'Lj1C924T12' => 'lonja', 'Lj2C993G6' => 'lonja', 'Lj3g0005790' => 'lja', 'Lj3g0015432' => 'lja', 'Lj3g0017722' => 'lja', 'Lj3g0018497' => 'lja', 'Lj4g0025071' => 'lja', 'Lsat_1_v5_gn_1_129680' => 'lsa', 'Lsat_1_v5_gn_2_25321' => 'lsa', 'Lsat_1_v5_gn_2_95461' => 'lsa', 'Lsat_1_v5_gn_4_159620' => 'lsa', 'Lsat_1_v5_gn_6_41301' => 'lsa', 'Lsat_1_v5_gn_6_74660' => 'lsa', 'Lsat_1_v5_gn_7_11520' => 'lsa', 'Lsat_1_v5_gn_9_67680' => 'lsa', 'Manes.04G008300' => 'mes', 'Manes.04G008400' => 'mes', 'Manes.04G026500' => 'mes', 'Manes.10G135300' => 'mes', 'Manes.11G157300' => 'mes', 'Manes.12G074000' => 'mes', 'Manes.16G006200' => 'mes', 'Manes.17G026400' => 'mes', 'Mapoly0024s0086' => 'mpo', 'Mapoly0024s0087' => 'mpo', 'Mapoly0071s0057' => 'mpo', 'Mapoly0204s0012' => 'mpo', 'MBI04_g37681_MAGBIO' => 'mbi', 'MBI05_g17779_MAGBIO' => 'mbi', 'MBI12_g31184_MAGBIO' => 'mbi', 'MBI17_g11083_MAGBIO' => 'mbi', 'MBI18_g03883_MAGBIO' => 'mbi', 'MBI18_g28940_MAGBIO' => 'mbi', 'MCO01G690' => 'mco', 'MD03G1109900' => 'mdo', 'MD03G1134800' => 'mdo', 'MD05G1348000' => 'mdo', 'MD10G1322400' => 'mdo', 'MD11G1123300' => 'mdo', 'MD11G1157600' => 'mdo', 'Medtr2g084875' => 'mtr', 'Medtr2g088130' => 'mtr', 'Medtr4g055310' => 'mtr', 'Medtr4g061070' => 'mtr', 'Medtr4g132250' => 'mtr', 'MELO3C004795.2' => 'cme', 'MELO3C004797.2' => 'cme', 'MELO3C007396.2' => 'cme', 'MELO3C019277.2' => 'cme', 'MELO3C021449.2' => 'cme', 'MELO3C025736.2' => 'cme', 'Migut.D02175' => 'egut', 'Migut.H01573' => 'egut', 'Migut.M01327' => 'egut', 'Migut.N02513' => 'egut', 'MSTRG.14638' => 'ama', 'MSTRG.18632' => 'ama', 'MSTRG.7203' => 'ama', 'Nitab4.5_0000533g0140' => 'nta', 'Nitab4.5_0000888g0150' => 'nta', 'Nitab4.5_0001453g0040' => 'nta', 'Nitab4.5_0002827g0090' => 'nta', 'Nitab4.5_0003082g0040' => 'nta', 'Nitab4.5_0007799g0040' => 'nta', 'Nitab4.5_0008983g0010' => 'nta', 'Nitab4.5_0009017g0020' => 'nta', 'Nn1g02132' => 'nnu', 'Nn1g03492' => 'nnu', 'Nn1g03493' => 'nnu', 'Nn1g03494' => 'nnu', 'Nn1g07164' => 'nnu', 'Nn1g07291' => 'nnu', 'Nn2g10655' => 'nnu', 'Nn2g11652' => 'nnu', 'Nn2g14008' => 'nnu', 'Nn3g17476' => 'nnu', 'Nn3g17477' => 'nnu', 'Nn4g22370' => 'nnu', 'Nn4g25255' => 'nnu', 'Nn5g27755' => 'nnu', 'Nn6g34260' => 'nnu', 'Nn6g35041' => 'nnu', 'Oeu005924.1' => 'oeu', 'Oeu008383.1' => 'oeu', 'Oeu014928.1' => 'oeu', 'Oeu019889.1' => 'oeu', 'Oeu022271.1' => 'oeu', 'Oeu025271.1' => 'oeu', 'Oeu036302.1' => 'oeu', 'Oeu044100.1' => 'oeu', 'Os01g0528300' => 'osa', 'Os03g0286200' => 'osa', 'Os04g0406600' => 'osa', 'Os07g0512000' => 'osa', 'Os07g0694600' => 'osa', 'Os08g0411000' => 'osa', 'Os09g0565700' => 'osa', 'Os09g0566050' => 'osa', 'Os10g0523700' => 'osa', 'Peaxi162Scf00002g00514' => 'pax', 'Peaxi162Scf00047g01817' => 'pax', 'Peaxi162Scf00114g00001' => 'pax', 'Peaxi162Scf00147g00613' => 'pax', 'Peaxi162Scf00389g00425' => 'pax', 'PGR042G1139' => 'pgr', 'PGR042G3273' => 'pgr', 'PGR102G2180' => 'pgr', 'PGR119G0234' => 'pgr', 'PGR119G0668' => 'pgr', 'PGSC0003DMG400007122' => 'stu', 'PGSC0003DMG400016478' => 'stu', 'PGSC0003DMG400025374' => 'stu', 'PGSC0003DMG400026536' => 'stu', 'Phvul.003G079600' => 'pvu', 'Phvul.005G115600' => 'pvu', 'Phvul.005G127100' => 'pvu', 'Phvul.006G149500' => 'pvu', 'Phvul.006G149600' => 'pvu', 'Phvul.011G071800' => 'pvu', 'Phvul.011G090400' => 'pvu', 'Potri.004G013400' => 'ptr', 'Potri.004G188100' => 'ptr', 'Potri.008G195500' => 'ptr', 'Potri.009G148800' => 'ptr', 'Potri.011G004700' => 'ptr', 'Pp3c17_22810' => 'ppa', 'Pp3c18_4480' => 'ppa', 'Pp3c19_13030' => 'ppa', 'Pp3c1_33620' => 'ppa', 'Pp3c2_9380' => 'ppa', 'PRCOL_00001023' => 'pco', 'Prupe.3G216300' => 'ppe', 'Prupe.4G019500' => 'ppe', 'Prupe.6G092500' => 'ppe', 'Prupe.6G119200' => 'ppe', 'Psat0s1945g0080' => 'psa', 'Psat0s4167g0040' => 'psa', 'Psat1g185800' => 'psa', 'Psat4g006440' => 'psa', 'Psat4g006480' => 'psa', 'Psat4g168120' => 'psa', 'Psat5g255680' => 'psa', 'Psat5g261760' => 'psa', 'Psat7g222120' => 'psa', 'PSO063G7252' => 'pso', 'PSO170G4778' => 'pso', 'PSO210G2249' => 'pso', 'PSO339G2411' => 'pso', 'PSO339G2457' => 'pso', 'PSO339G2854' => 'pso', 'PSO339G4288' => 'pso', 'PSO339G4615' => 'pso', 'PSO384G2796' => 'pso', 'PSO384G2940' => 'pso', 'PSO384G4227' => 'pso', 'PSO478G1425' => 'pso', 'PSO541G3863' => 'pso', 'PSO675G0507' => 'pso', 'PSO782G0338' => 'pso', 'PSO832G0644' => 'pso', 'QL01p013664' => 'qlo', 'QL01p036598' => 'qlo', 'QL05p072984' => 'qlo', 'QL08p005768' => 'qlo', 'QL08p032743' => 'qlo', 'QL93p0073_0439' => 'qlo', 'QL93p0073_0444' => 'qlo', 'RcHm_v2.0_Chr5g0002851' => 'rch', 'RcHm_v2.0_Chr5g0055201' => 'rch', 'RcHm_v2.0_Chr5g0061191' => 'rch', 'RcHm_v2.0_Chr7g0203231' => 'rch', 'Rhsim01G0208100' => 'rsi', 'Rhsim01G0208200' => 'rsi', 'Rhsim02G0106500' => 'rsi', 'Rhsim03G0107900' => 'rsi', 'Rhsim06G0163400' => 'rsi', 'Rhsim13G0105200' => 'rsi', 'Sabra04G0006300' => 'sbr', 'Sabra04G0127000' => 'sbr', 'Sabra08G0148700' => 'sbr', 'Sabra09G0117400' => 'sbr', 'SalBow1G3326' => 'sbo', 'SalBow3G3228' => 'sbo', 'SalBow6G1634' => 'sbo', 'SalBow6G3603' => 'sbo', 'SalBow6G5266' => 'sbo', 'SalBow7G2265' => 'sbo', 'SalBow8G0850' => 'sbo', 'SalBow8G2592' => 'sbo', 'Sc05g0009240' => 'sci', 'Sc12g0002300' => 'sci', 'Sc21g0000100' => 'sci', 'Sc21g0004720' => 'sci', 'Sed0002949' => 'sed', 'Sed0004114' => 'sed', 'Sed0004306' => 'sed', 'Sed0006172' => 'sed', 'Sed0008413' => 'sed', 'Sed0013809' => 'sed', 'Sed0019556' => 'sed', 'SEGI_03570' => 'sgi', 'SEGI_07859' => 'sgi', 'SEGI_15042' => 'sgi', 'SEGI_16263' => 'sgi', 'SEGI_16552' => 'sgi', 'SEGI_24331' => 'sgi', 'SEGI_27316' => 'sgi', 'SEGI_29521' => 'sgi', 'SEGI_41342' => 'sgi', 'SGA_v2.0_scaffold27G11617' => 'sas', 'SGA_v2.0_scaffold316G48428' => 'sas', 'SGA_v2.0_scaffold49G18261' => 'sas', 'SGA_v2.0_scaffold7G03831' => 'sas', 'SGA_v2.0_scaffold93G28359' => 'sas', 'SHI02210' => 'shi', 'SHI06028' => 'shi', 'SHI06321' => 'shi', 'SMO111G0012' => 'smo', 'SMO228G0080' => 'smo', 'SMO356G0756' => 'smo', 'Solyc02g080620.3' => 'sly', 'Solyc06g074530.1' => 'sly', 'Solyc11g066890.1' => 'sly', 'Solyc11g072520.3' => 'sly', 'Sopen02g025330' => 'spe', 'Sopen06g031000' => 'spe', 'Sopen09g008240' => 'spe', 'Sopen09g025210' => 'spe', 'Sopen11g026600' => 'spe', 'Sopen11g030170' => 'spe', 'Sp1g10420' => 'spa', 'Sp3g06570' => 'spa', 'Sp4g10660' => 'spa', 'Sp5g16460' => 'spa', 'Sp6g22710' => 'spa', 'TAR365G0112' => 'tar', 'TAR369G0717' => 'tar', 'TAR374G0976' => 'tar', 'TAR623G1128' => 'tar', 'TAR626G1937' => 'tar', 'TAR627G0123' => 'tar', 'TAR628G0305' => 'tar', 'TAR636G1176' => 'tar', 'TAR636G2442' => 'tar', 'THA.LOC104800556' => 'tha', 'THA.LOC104809501' => 'tha', 'THA.LOC104815126' => 'tha', 'THA.LOC104815732' => 'tha', 'THA.LOC104823528' => 'tha', 'Thecc.02G365600' => 'tca', 'Thecc.06G222300' => 'tca', 'Thecc.09G261800' => 'tca', 'Thecc.09G291400' => 'tca', 'Thhalv10003028m.g' => 'esa', 'Thhalv10007886m.g' => 'esa', 'Thhalv10016085m.g' => 'esa', 'Thhalv10016681m.g' => 'esa', 'Thhalv10020951m.g' => 'esa', 'TPR.G15598' => 'tpr', 'TPR.G29305' => 'tpr', 'TPR.G32395' => 'tpr', 'TPR.G36998' => 'tpr', 'TPR.G4227' => 'tpr', 'TWI18G1433' => 'twi', 'TWI31G0755' => 'twi', 'TWI38G0912' => 'twi', 'TWI75G1097' => 'twi', 'TWI75G1619' => 'twi', 'TWI79G1336' => 'twi', 'unitig_0.g943' => 'ugi', 'unitig_0.g944' => 'ugi', 'unitig_22.g6646' => 'ugi', 'unitig_37.g12681' => 'ugi', 'unitig_8.g3290' => 'ugi', 'vmacro03278' => 'vma', 'vmacro12197' => 'vma', 'vmacro14478' => 'vma', 'vmacro15787' => 'vma', 'vmacro15789' => 'vma', 'vmacro15790' => 'vma', 'vmacro15806' => 'vma', 'vmacro22907' => 'vma', 'vmacro22908' => 'vma', 'vmacro22909' => 'vma', 'vmacro23108' => 'vma', 'VMungo0540G0540' => 'vmu', 'VMungo0540G2468' => 'vmu', 'VMungo1080G0390' => 'vmu', 'VMungo1080G1165' => 'vmu', 'VMungo1127G0170' => 'vmu', 'VMungo1127G2099' => 'vmu', 'VMungo1215G3013' => 'vmu', 'Zm00001eb013110' => 'zma', 'Zm00001eb084260' => 'zma', 'Zm00001eb096110' => 'zma', 'Zm00001eb217510' => 'zma', 'Zm00001eb322550' => 'zma', 'Zm00001eb390770' => 'zma', 'Zm00001eb397170' => 'zma', 'Zm00001eb404610' => 'zma', 'Zm00001eb421790' => 'zma' ) $gf_id = 'HOM05D000911' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000911' ) $data_identifier = 'HOM05D000911' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 16, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 5, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 6, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 8, 'nnu' => (int) 16, 'oeu' => (int) 8, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 5, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 16, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421790' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000911', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27780' => 'bna', 'A03p35380' => 'bna', 'A04p21160' => 'bna', 'A05p40570' => 'bna', 'A06p26900' => 'bna', 'A08p33230' => 'bna', 'A09p65960' => 'bna', 'A10p18290' => 'bna', 'Aa31LG1G12990' => 'aar', 'Aa31LG1G2980' => 'aar', 'Aa31LG4G14320' => 'aar', 'Aa31LG7G11800' => 'aar', 'Aa31sc36G50' => 'aar', 'Aa31sc36G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3721' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5459' => 'aag', 'Actinidia03028' => 'ach', 'Actinidia03753' => 'ach', 'Actinidia04187' => 'ach', 'Actinidia05509' => 'ach', 'Actinidia24180' => 'ach', 'Actinidia26906' => 'ach', 'Actinidia37097' => 'ach', 'Actinidia38249' => 'ach', 'Ah.01g003470' => 'amhyb', 'Ah.01g004580' => 'amhyb', 'Ah.01g014850' => 'amhyb', 'Ah.01g016830' => 'amhyb', 'Ah.14g088000' => 'amhyb', 'AL1G22980' => 'aly', 'AL3G18990' => 'aly', 'AL4G22440' => 'aly', 'AL4G33180' => 'aly', 'AL5G22920' => 'aly', 'AL6G33660' => 'aly', 'AL8G20720' => 'aly', 'Aqoxy1G00935' => 'aox', 'Aqoxy1G02094' => 'aox', 'Aqoxy2G01239' => 'aox', 'Aqoxy4G01870' => 'aox', 'Aqoxy7G00450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.36ZVTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71EM27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5D6C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH3WRE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3NCM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RIM768' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YB5YRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z36GDV' => 'arhy', 'AT1G08250' => 'ath', 'AT1G11790' => 'ath', 'AT2G27820' => 'ath', 'AT3G07630' => 'ath', 'AT3G44720' => 'ath', 'AT5G22630' => 'ath', 'ATR0693G304' => 'atr', 'ATR0794G109' => 'atr', 'ATR0820G120' => 'atr', 'ATR1159G064' => 'atr', 'Atru.chr10.2239' => 'acertr', 'Atru.chr3.3371' => 'acertr', 'Atru.chr6.3202' => 'acertr', 'AUR62006499' => 'cqu', 'AUR62012718' => 'cqu', 'AUR62021938' => 'cqu', 'AUR62023932' => 'cqu', 'AUR62025034' => 'cqu', 'AUR62025035' => 'cqu', 'AUR62038307' => 'cqu', 'AUR62043466' => 'cqu', 'BcaB02g10748' => 'bca', 'BcaB03g13231' => 'bca', 'BcaB03g14689' => 'bca', 'BcaB05g22716' => 'bca', 'BcaB06g28172' => 'bca', 'BcaB08g36413' => 'bca', 'BcaC01g02186' => 'bca', 'BcaC01g04272' => 'bca', 'BcaC02g08080' => 'bca', 'BcaC02g08227' => 'bca', 'BcaC03g13901' => 'bca', 'BcaC04g19593' => 'bca', 'BcaC04g20874' => 'bca', 'BcaC05g29557' => 'bca', 'BcaC06g35505' => 'bca', 'BcaC07g41954' => 'bca', 'BcaC07g41955' => 'bca', 'BcaC07g41956' => 'bca', 'BcaC07g42519' => 'bca', 'BcaC07g42520' => 'bca', 'BcaC07g42523' => 'bca', 'BcaC07g42524' => 'bca', 'BcaC07g42525' => 'bca', 'BcaC08g47480' => 'bca', 'BcaC08g47481' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00530' => 'bna', 'BolC2t07178H' => 'bol', 'BolC3t16567H' => 'bol', 'BolC4t27234H' => 'bol', 'BolC5t29728H' => 'bol', 'BolC5t34622H' => 'bol', 'BolC6t40321H' => 'bol', 'BolC7t42028H' => 'bol', 'BolC8t49125H' => 'bol', 'BolC8t52538H' => 'bol', 'BolC8t52539H' => 'bol', 'BolC9t56681H' => 'bol', 'BolC9t58266H' => 'bol', 'BolSC21t60294H' => 'bol', 'BraA02t05670Z' => 'bra', 'BraA03t12716Z' => 'bra', 'BraA04t17685Z' => 'bra', 'BraA05t22788Z' => 'bra', 'BraA06t24032Z' => 'bra', 'BraA06t25625Z' => 'bra', 'BraA07t27930Z' => 'bra', 'BraA08t35242Z' => 'bra', 'BraA09t38609Z' => 'bra', 'BraA10t43905Z' => 'bra', 'C02p11060' => 'bna', 'C03p42990' => 'bna', 'C03p67310' => 'bna', 'C04p56990' => 'bna', 'C04p58660' => 'bna', 'C05p09890' => 'bna', 'C05p59680' => 'bna', 'C06p19830' => 'bna', 'C06p53040' => 'bna', 'C07p15230' => 'bna', 'C08p50070' => 'bna', 'C08p50090' => 'bna', 'C09p38330' => 'bna', 'C09p53940' => 'bna', 'CAN.G1014.1' => 'can', 'CAN.G644.30' => 'can', 'CAN.G84.47' => 'can', 'CAN.G919.8' => 'can', 'CANSAT54G0113' => 'cansat', 'CANSAT54G1286' => 'cansat', 'CANSAT64G1020' => 'cansat', 'CARHR008080' => 'chi', 'CARHR008090' => 'chi', 'CARHR012130' => 'chi', 'CARHR038390' => 'chi', 'CARHR082330' => 'chi', 'CARHR120520' => 'chi', 'CARHR151470' => 'chi', 'CARHR190950' => 'chi', 'Carub.0001s0760' => 'cru', 'Carub.0001s1146' => 'cru', 'Carub.0003s0721' => 'cru', 'Carub.0004s0858' => 'cru', 'Carub.0005s1040' => 'cru', 'Carub.0006s2035' => 'cru', 'Carub.0015s0005' => 'cru', 'Ca_01607_v3' => 'car', 'Ca_01677_v3' => 'car', 'Ca_06087_v3' => 'car', 'Ca_19238_v3' => 'car', 'Ca_19373_v3' => 'car', 'Ca_21079_v3' => 'car', 'CBR_g54016' => 'cbr', 'CBR_g54018' => 'cbr', 'CBR_g54020' => 'cbr', 'Cc01_g09780' => 'ccan', 'Cc01_g11680' => 'ccan', 'Cc02_g15610' => 'ccan', 'Cc05_g04350' => 'ccan', 'Cc09_g01580' => 'ccan', 'CDE01G0795' => 'cde', 'CDE02G2024' => 'cde', 'CDE02G2260' => 'cde', 'CDE02G4561' => 'cde', 'CDE05G2733' => 'cde', 'CDE05G3422' => 'cde', 'CDE06G2003' => 'cde', 'CDE08G0576' => 'cde', 'CDE09G0048' => 'cde', 'CDE11G0805' => 'cde', 'Cfa003644' => 'cfa', 'Cfa006290' => 'cfa', 'Cfa010080' => 'cfa', 'Cfa011376' => 'cfa', 'Cfa011576' => 'cfa', 'Cfa011577' => 'cfa', 'Cfa014389' => 'cfa', 'Ciclev10006044m.g' => 'ccl', 'Ciclev10006954m.g' => 'ccl', 'Ciclev10015131m.g' => 'ccl', 'Ciclev10015580m.g' => 'ccl', 'Ciclev10028359m.g' => 'ccl', 'Ciclev10028573m.g' => 'ccl', 'CiPaw.03G159300' => 'cil', 'CiPaw.04G115100' => 'cil', 'CiPaw.09G092800' => 'cil', 'CiPaw.10G071800' => 'cil', 'CiPaw.13G105800' => 'cil', 'CiPaw.13G141000' => 'cil', 'CiPaw.14G103400' => 'cil', 'ClCG01G012700' => 'cla', 'ClCG01G012720' => 'cla', 'ClCG01G021920' => 'cla', 'ClCG02G008870' => 'cla', 'ClCG02G020840' => 'cla', 'ClCG02G021930' => 'cla', 'COL.COLO4_19302' => 'col', 'COL.COLO4_25262' => 'col', 'COL.COLO4_31788' => 'col', 'Cpa.g.c34684' => 'cpa', 'Cpa.g.c36520.1' => 'cpa', 'Cpa.g.c45626' => 'cpa', 'Cpa.g.sc121.17' => 'cpa', 'Cpa.g.sc13.22' => 'cpa', 'Cpa.g.sc87.88' => 'cpa', 'Cre06.g261800' => 'cre', 'CsaV3_1G014500' => 'csa', 'CsaV3_1G014510' => 'csa', 'CsaV3_2G034880' => 'csa', 'CsaV3_6G014760' => 'csa', 'CsaV3_6G021500' => 'csa', 'CsaV3_6G048980' => 'csa', 'CSS0002511' => 'camsi', 'CSS0007556' => 'camsi', 'CSS0008532' => 'camsi', 'CSS0009709' => 'camsi', 'CSS0010486' => 'camsi', 'CSS0016768' => 'camsi', 'CSS0023512' => 'camsi', 'CSS0025341' => 'camsi', 'CSS0027999' => 'camsi', 'CSS0028944' => 'camsi', 'CSS0032292' => 'camsi', 'CSS0032464' => 'camsi', 'CSS0037153' => 'camsi', 'CSS0039256' => 'camsi', 'CSS0048392' => 'camsi', 'CSS0050458' => 'camsi', 'DCAR_004224' => 'dca', 'DCAR_006147' => 'dca', 'DCAR_006465' => 'dca', 'DCAR_008159' => 'dca', 'DCAR_012164' => 'dca', 'DCAR_019764' => 'dca', 'Dinv05418' => 'din', 'Dinv10839' => 'din', 'Dinv12521' => 'din', 'Dinv13900' => 'din', 'Dinv29426' => 'din', 'Duzib150G0263' => 'dzi', 'Duzib168G1178' => 'dzi', 'Duzib168G1924' => 'dzi', 'Duzib170G0299' => 'dzi', 'Duzib170G0813' => 'dzi', 'Duzib235G1128' => 'dzi', 'Duzib248G1060' => 'dzi', 'ECA232G1910' => 'eca', 'ECA233G4621' => 'eca', 'ECA238G1216' => 'eca', 'ECA238G1784' => 'eca', 'ECA248G1242' => 'eca', 'EL10Ac8g20071' => 'bvu', 'EL10Ac9g21086' => 'bvu', 'EL10Ac9g22407' => 'bvu', 'EL10Ac9g22412' => 'bvu', 'Eucgr.A01119' => 'egr', 'Eucgr.E04043' => 'egr', 'Eucgr.J00428' => 'egr', 'Eucgr.J00958' => 'egr', 'FAN11G3091' => 'fan', 'FAN11G3651' => 'fan', 'FAN16G2566' => 'fan', 'FAN21G3155' => 'fan', 'FAN21G3400' => 'fan', 'FAN21G3543' => 'fan', 'FAN25G0234' => 'fan', 'FAN25G1422' => 'fan', 'FAN25G3392' => 'fan', 'FvH4_3g01940' => 'fve', 'FvH4_3g29870' => 'fve', 'FvH4_3g33680' => 'fve', 'Glyma.09G004200' => 'gma', 'Glyma.11G151288' => 'gma', 'Glyma.11G189100' => 'gma', 'Glyma.12G072500' => 'gma', 'Glyma.12G085500' => 'gma', 'Glyma.12G181800' => 'gma', 'Glyma.12G193000' => 'gma', 'Glyma.13G309300' => 'gma', 'Glyma.13G319000' => 'gma', 'Glyma.17G012600' => 'gma', 'Gohir.A06G148600' => 'ghi', 'Gohir.A07G115800' => 'ghi', 'Gohir.A08G003600' => 'ghi', 'Gohir.A09G093300' => 'ghi', 'Gohir.A09G105400' => 'ghi', 'Gohir.A09G105500' => 'ghi', 'Gohir.D06G154600' => 'ghi', 'Gohir.D07G120200' => 'ghi', 'Gohir.D08G013900' => 'ghi', 'Gohir.D09G093100' => 'ghi', 'Gohir.D09G102200' => 'ghi', 'Gohir.D09G102300' => 'ghi', 'Gorai.001G129400' => 'gra', 'Gorai.004G008200' => 'gra', 'Gorai.006G109800' => 'gra', 'Gorai.006G119500' => 'gra', 'Gorai.006G121300' => 'gra', 'Gorai.010G180700' => 'gra', 'GSVIVG01012716001' => 'vvi', 'GSVIVG01025118001' => 'vvi', 'GSVIVG01030439001' => 'vvi', 'GSVIVG01031397001' => 'vvi', 'HanXRQChr01g0004201' => 'han', 'HanXRQChr02g0054941' => 'han', 'HanXRQChr05g0141811' => 'han', 'HanXRQChr07g0197751' => 'han', 'HanXRQChr11g0346691' => 'han', 'HanXRQChr13g0396971' => 'han', 'HanXRQChr14g0432951' => 'han', 'HanXRQChr14g0452001' => 'han', 'HanXRQChr15g0496681' => 'han', 'HanXRQChr17g0557491' => 'han', 'HanXRQChr17g0557501' => 'han', 'Haze_06809' => 'cav', 'Haze_12852' => 'cav', 'Haze_15850' => 'cav', 'Haze_23446' => 'cav', 'Haze_23942' => 'cav', 'Haze_23943' => 'cav', 'Hma1.2p1_0091F.1_g046450' => 'hma', 'Hma1.2p1_0128F.1_g059910' => 'hma', 'Hma1.2p1_0249F.1_g102260' => 'hma', 'Hma1.2p1_0453F.1_g156190' => 'hma', 'Hma1.2p1_0695F.1_g204380' => 'hma', 'Hma1.2p1_0749F.1_g212650' => 'hma', 'Hma1.2p1_2156F.1_g315420' => 'hma', 'Hma1.2p1_2686F.1_g326940' => 'hma', 'HPP92_006428' => 'vpl', 'HPP92_012069' => 'vpl', 'HPP92_014129' => 'vpl', 'HPP92_014133' => 'vpl', 'HPP92_017315' => 'vpl', 'HPP92_026445' => 'vpl', 'HPP92_026446' => 'vpl', 'Hund00774' => 'sun', 'Hund07682' => 'sun', 'Hund21413' => 'sun', 'Hund23462' => 'sun', 'Hund23463' => 'sun', 'Lalb_Chr03g0027911' => 'lal', 'Lalb_Chr13g0304271' => 'lal', 'Lalb_Chr19g0137471' => 'lal', 'Lalb_Chr22g0350651' => 'lal', 'Lalb_Chr24g0395151' => 'lal', 'Lj1A1231T40' => 'lonja', 'Lj1A221T48' => 'lonja', 'Lj1C924T12' => 'lonja', 'Lj2C993G6' => 'lonja', 'Lj3g0005790' => 'lja', 'Lj3g0015432' => 'lja', 'Lj3g0017722' => 'lja', 'Lj3g0018497' => 'lja', 'Lj4g0025071' => 'lja', 'Lsat_1_v5_gn_1_129680' => 'lsa', 'Lsat_1_v5_gn_2_25321' => 'lsa', 'Lsat_1_v5_gn_2_95461' => 'lsa', 'Lsat_1_v5_gn_4_159620' => 'lsa', 'Lsat_1_v5_gn_6_41301' => 'lsa', 'Lsat_1_v5_gn_6_74660' => 'lsa', 'Lsat_1_v5_gn_7_11520' => 'lsa', 'Lsat_1_v5_gn_9_67680' => 'lsa', 'Manes.04G008300' => 'mes', 'Manes.04G008400' => 'mes', 'Manes.04G026500' => 'mes', 'Manes.10G135300' => 'mes', 'Manes.11G157300' => 'mes', 'Manes.12G074000' => 'mes', 'Manes.16G006200' => 'mes', 'Manes.17G026400' => 'mes', 'Mapoly0024s0086' => 'mpo', 'Mapoly0024s0087' => 'mpo', 'Mapoly0071s0057' => 'mpo', 'Mapoly0204s0012' => 'mpo', 'MBI04_g37681_MAGBIO' => 'mbi', 'MBI05_g17779_MAGBIO' => 'mbi', 'MBI12_g31184_MAGBIO' => 'mbi', 'MBI17_g11083_MAGBIO' => 'mbi', 'MBI18_g03883_MAGBIO' => 'mbi', 'MBI18_g28940_MAGBIO' => 'mbi', 'MCO01G690' => 'mco', 'MD03G1109900' => 'mdo', 'MD03G1134800' => 'mdo', 'MD05G1348000' => 'mdo', 'MD10G1322400' => 'mdo', 'MD11G1123300' => 'mdo', 'MD11G1157600' => 'mdo', 'Medtr2g084875' => 'mtr', 'Medtr2g088130' => 'mtr', 'Medtr4g055310' => 'mtr', 'Medtr4g061070' => 'mtr', 'Medtr4g132250' => 'mtr', 'MELO3C004795.2' => 'cme', 'MELO3C004797.2' => 'cme', 'MELO3C007396.2' => 'cme', 'MELO3C019277.2' => 'cme', 'MELO3C021449.2' => 'cme', 'MELO3C025736.2' => 'cme', 'Migut.D02175' => 'egut', 'Migut.H01573' => 'egut', 'Migut.M01327' => 'egut', 'Migut.N02513' => 'egut', 'MSTRG.14638' => 'ama', 'MSTRG.18632' => 'ama', 'MSTRG.7203' => 'ama', 'Nitab4.5_0000533g0140' => 'nta', 'Nitab4.5_0000888g0150' => 'nta', 'Nitab4.5_0001453g0040' => 'nta', 'Nitab4.5_0002827g0090' => 'nta', 'Nitab4.5_0003082g0040' => 'nta', 'Nitab4.5_0007799g0040' => 'nta', 'Nitab4.5_0008983g0010' => 'nta', 'Nitab4.5_0009017g0020' => 'nta', 'Nn1g02132' => 'nnu', 'Nn1g03492' => 'nnu', 'Nn1g03493' => 'nnu', 'Nn1g03494' => 'nnu', 'Nn1g07164' => 'nnu', 'Nn1g07291' => 'nnu', 'Nn2g10655' => 'nnu', 'Nn2g11652' => 'nnu', 'Nn2g14008' => 'nnu', 'Nn3g17476' => 'nnu', 'Nn3g17477' => 'nnu', 'Nn4g22370' => 'nnu', 'Nn4g25255' => 'nnu', 'Nn5g27755' => 'nnu', 'Nn6g34260' => 'nnu', 'Nn6g35041' => 'nnu', 'Oeu005924.1' => 'oeu', 'Oeu008383.1' => 'oeu', 'Oeu014928.1' => 'oeu', 'Oeu019889.1' => 'oeu', 'Oeu022271.1' => 'oeu', 'Oeu025271.1' => 'oeu', 'Oeu036302.1' => 'oeu', 'Oeu044100.1' => 'oeu', 'Os01g0528300' => 'osa', 'Os03g0286200' => 'osa', 'Os04g0406600' => 'osa', 'Os07g0512000' => 'osa', 'Os07g0694600' => 'osa', 'Os08g0411000' => 'osa', 'Os09g0565700' => 'osa', 'Os09g0566050' => 'osa', 'Os10g0523700' => 'osa', 'Peaxi162Scf00002g00514' => 'pax', 'Peaxi162Scf00047g01817' => 'pax', 'Peaxi162Scf00114g00001' => 'pax', 'Peaxi162Scf00147g00613' => 'pax', 'Peaxi162Scf00389g00425' => 'pax', 'PGR042G1139' => 'pgr', 'PGR042G3273' => 'pgr', 'PGR102G2180' => 'pgr', 'PGR119G0234' => 'pgr', 'PGR119G0668' => 'pgr', 'PGSC0003DMG400007122' => 'stu', 'PGSC0003DMG400016478' => 'stu', 'PGSC0003DMG400025374' => 'stu', 'PGSC0003DMG400026536' => 'stu', 'Phvul.003G079600' => 'pvu', 'Phvul.005G115600' => 'pvu', 'Phvul.005G127100' => 'pvu', 'Phvul.006G149500' => 'pvu', 'Phvul.006G149600' => 'pvu', 'Phvul.011G071800' => 'pvu', 'Phvul.011G090400' => 'pvu', 'Potri.004G013400' => 'ptr', 'Potri.004G188100' => 'ptr', 'Potri.008G195500' => 'ptr', 'Potri.009G148800' => 'ptr', 'Potri.011G004700' => 'ptr', 'Pp3c17_22810' => 'ppa', 'Pp3c18_4480' => 'ppa', 'Pp3c19_13030' => 'ppa', 'Pp3c1_33620' => 'ppa', 'Pp3c2_9380' => 'ppa', 'PRCOL_00001023' => 'pco', 'Prupe.3G216300' => 'ppe', 'Prupe.4G019500' => 'ppe', 'Prupe.6G092500' => 'ppe', 'Prupe.6G119200' => 'ppe', 'Psat0s1945g0080' => 'psa', 'Psat0s4167g0040' => 'psa', 'Psat1g185800' => 'psa', 'Psat4g006440' => 'psa', 'Psat4g006480' => 'psa', 'Psat4g168120' => 'psa', 'Psat5g255680' => 'psa', 'Psat5g261760' => 'psa', 'Psat7g222120' => 'psa', 'PSO063G7252' => 'pso', 'PSO170G4778' => 'pso', 'PSO210G2249' => 'pso', 'PSO339G2411' => 'pso', 'PSO339G2457' => 'pso', 'PSO339G2854' => 'pso', 'PSO339G4288' => 'pso', 'PSO339G4615' => 'pso', 'PSO384G2796' => 'pso', 'PSO384G2940' => 'pso', 'PSO384G4227' => 'pso', 'PSO478G1425' => 'pso', 'PSO541G3863' => 'pso', 'PSO675G0507' => 'pso', 'PSO782G0338' => 'pso', 'PSO832G0644' => 'pso', 'QL01p013664' => 'qlo', 'QL01p036598' => 'qlo', 'QL05p072984' => 'qlo', 'QL08p005768' => 'qlo', 'QL08p032743' => 'qlo', 'QL93p0073_0439' => 'qlo', 'QL93p0073_0444' => 'qlo', 'RcHm_v2.0_Chr5g0002851' => 'rch', 'RcHm_v2.0_Chr5g0055201' => 'rch', 'RcHm_v2.0_Chr5g0061191' => 'rch', 'RcHm_v2.0_Chr7g0203231' => 'rch', 'Rhsim01G0208100' => 'rsi', 'Rhsim01G0208200' => 'rsi', 'Rhsim02G0106500' => 'rsi', 'Rhsim03G0107900' => 'rsi', 'Rhsim06G0163400' => 'rsi', 'Rhsim13G0105200' => 'rsi', 'Sabra04G0006300' => 'sbr', 'Sabra04G0127000' => 'sbr', 'Sabra08G0148700' => 'sbr', 'Sabra09G0117400' => 'sbr', 'SalBow1G3326' => 'sbo', 'SalBow3G3228' => 'sbo', 'SalBow6G1634' => 'sbo', 'SalBow6G3603' => 'sbo', 'SalBow6G5266' => 'sbo', 'SalBow7G2265' => 'sbo', 'SalBow8G0850' => 'sbo', 'SalBow8G2592' => 'sbo', 'Sc05g0009240' => 'sci', 'Sc12g0002300' => 'sci', 'Sc21g0000100' => 'sci', 'Sc21g0004720' => 'sci', 'Sed0002949' => 'sed', 'Sed0004114' => 'sed', 'Sed0004306' => 'sed', 'Sed0006172' => 'sed', 'Sed0008413' => 'sed', 'Sed0013809' => 'sed', 'Sed0019556' => 'sed', 'SEGI_03570' => 'sgi', 'SEGI_07859' => 'sgi', 'SEGI_15042' => 'sgi', 'SEGI_16263' => 'sgi', 'SEGI_16552' => 'sgi', 'SEGI_24331' => 'sgi', 'SEGI_27316' => 'sgi', 'SEGI_29521' => 'sgi', 'SEGI_41342' => 'sgi', 'SGA_v2.0_scaffold27G11617' => 'sas', 'SGA_v2.0_scaffold316G48428' => 'sas', 'SGA_v2.0_scaffold49G18261' => 'sas', 'SGA_v2.0_scaffold7G03831' => 'sas', 'SGA_v2.0_scaffold93G28359' => 'sas', 'SHI02210' => 'shi', 'SHI06028' => 'shi', 'SHI06321' => 'shi', 'SMO111G0012' => 'smo', 'SMO228G0080' => 'smo', 'SMO356G0756' => 'smo', 'Solyc02g080620.3' => 'sly', 'Solyc06g074530.1' => 'sly', 'Solyc11g066890.1' => 'sly', 'Solyc11g072520.3' => 'sly', 'Sopen02g025330' => 'spe', 'Sopen06g031000' => 'spe', 'Sopen09g008240' => 'spe', 'Sopen09g025210' => 'spe', 'Sopen11g026600' => 'spe', 'Sopen11g030170' => 'spe', 'Sp1g10420' => 'spa', 'Sp3g06570' => 'spa', 'Sp4g10660' => 'spa', 'Sp5g16460' => 'spa', 'Sp6g22710' => 'spa', 'TAR365G0112' => 'tar', 'TAR369G0717' => 'tar', 'TAR374G0976' => 'tar', 'TAR623G1128' => 'tar', 'TAR626G1937' => 'tar', 'TAR627G0123' => 'tar', 'TAR628G0305' => 'tar', 'TAR636G1176' => 'tar', 'TAR636G2442' => 'tar', 'THA.LOC104800556' => 'tha', 'THA.LOC104809501' => 'tha', 'THA.LOC104815126' => 'tha', 'THA.LOC104815732' => 'tha', 'THA.LOC104823528' => 'tha', 'Thecc.02G365600' => 'tca', 'Thecc.06G222300' => 'tca', 'Thecc.09G261800' => 'tca', 'Thecc.09G291400' => 'tca', 'Thhalv10003028m.g' => 'esa', 'Thhalv10007886m.g' => 'esa', 'Thhalv10016085m.g' => 'esa', 'Thhalv10016681m.g' => 'esa', 'Thhalv10020951m.g' => 'esa', 'TPR.G15598' => 'tpr', 'TPR.G29305' => 'tpr', 'TPR.G32395' => 'tpr', 'TPR.G36998' => 'tpr', 'TPR.G4227' => 'tpr', 'TWI18G1433' => 'twi', 'TWI31G0755' => 'twi', 'TWI38G0912' => 'twi', 'TWI75G1097' => 'twi', 'TWI75G1619' => 'twi', 'TWI79G1336' => 'twi', 'unitig_0.g943' => 'ugi', 'unitig_0.g944' => 'ugi', 'unitig_22.g6646' => 'ugi', 'unitig_37.g12681' => 'ugi', 'unitig_8.g3290' => 'ugi', 'vmacro03278' => 'vma', 'vmacro12197' => 'vma', 'vmacro14478' => 'vma', 'vmacro15787' => 'vma', 'vmacro15789' => 'vma', 'vmacro15790' => 'vma', 'vmacro15806' => 'vma', 'vmacro22907' => 'vma', 'vmacro22908' => 'vma', 'vmacro22909' => 'vma', 'vmacro23108' => 'vma', 'VMungo0540G0540' => 'vmu', 'VMungo0540G2468' => 'vmu', 'VMungo1080G0390' => 'vmu', 'VMungo1080G1165' => 'vmu', 'VMungo1127G0170' => 'vmu', 'VMungo1127G2099' => 'vmu', 'VMungo1215G3013' => 'vmu', 'Zm00001eb013110' => 'zma', 'Zm00001eb084260' => 'zma', 'Zm00001eb096110' => 'zma', 'Zm00001eb217510' => 'zma', 'Zm00001eb322550' => 'zma', 'Zm00001eb390770' => 'zma', 'Zm00001eb397170' => 'zma', 'Zm00001eb404610' => 'zma', 'Zm00001eb421790' => 'zma' ), 'gf_id' => 'HOM05D000911', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000911' ), 'data_identifier' => 'HOM05D000911', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000911', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27780' => 'bna', 'A03p35380' => 'bna', 'A04p21160' => 'bna', 'A05p40570' => 'bna', 'A06p26900' => 'bna', 'A08p33230' => 'bna', 'A09p65960' => 'bna', 'A10p18290' => 'bna', 'Aa31LG1G12990' => 'aar', 'Aa31LG1G2980' => 'aar', 'Aa31LG4G14320' => 'aar', 'Aa31LG7G11800' => 'aar', 'Aa31sc36G50' => 'aar', 'Aa31sc36G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3721' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5459' => 'aag', 'Actinidia03028' => 'ach', 'Actinidia03753' => 'ach', 'Actinidia04187' => 'ach', 'Actinidia05509' => 'ach', 'Actinidia24180' => 'ach', 'Actinidia26906' => 'ach', 'Actinidia37097' => 'ach', 'Actinidia38249' => 'ach', 'Ah.01g003470' => 'amhyb', 'Ah.01g004580' => 'amhyb', 'Ah.01g014850' => 'amhyb', 'Ah.01g016830' => 'amhyb', 'Ah.14g088000' => 'amhyb', 'AL1G22980' => 'aly', 'AL3G18990' => 'aly', 'AL4G22440' => 'aly', 'AL4G33180' => 'aly', 'AL5G22920' => 'aly', 'AL6G33660' => 'aly', 'AL8G20720' => 'aly', 'Aqoxy1G00935' => 'aox', 'Aqoxy1G02094' => 'aox', 'Aqoxy2G01239' => 'aox', 'Aqoxy4G01870' => 'aox', 'Aqoxy7G00450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.36ZVTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71EM27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5D6C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH3WRE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3NCM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RIM768' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YB5YRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z36GDV' => 'arhy', 'AT1G08250' => 'ath', 'AT1G11790' => 'ath', 'AT2G27820' => 'ath', 'AT3G07630' => 'ath', 'AT3G44720' => 'ath', 'AT5G22630' => 'ath', 'ATR0693G304' => 'atr', 'ATR0794G109' => 'atr', 'ATR0820G120' => 'atr', 'ATR1159G064' => 'atr', 'Atru.chr10.2239' => 'acertr', 'Atru.chr3.3371' => 'acertr', 'Atru.chr6.3202' => 'acertr', 'AUR62006499' => 'cqu', 'AUR62012718' => 'cqu', 'AUR62021938' => 'cqu', 'AUR62023932' => 'cqu', 'AUR62025034' => 'cqu', 'AUR62025035' => 'cqu', 'AUR62038307' => 'cqu', 'AUR62043466' => 'cqu', 'BcaB02g10748' => 'bca', 'BcaB03g13231' => 'bca', 'BcaB03g14689' => 'bca', 'BcaB05g22716' => 'bca', 'BcaB06g28172' => 'bca', 'BcaB08g36413' => 'bca', 'BcaC01g02186' => 'bca', 'BcaC01g04272' => 'bca', 'BcaC02g08080' => 'bca', 'BcaC02g08227' => 'bca', 'BcaC03g13901' => 'bca', 'BcaC04g19593' => 'bca', 'BcaC04g20874' => 'bca', 'BcaC05g29557' => 'bca', 'BcaC06g35505' => 'bca', 'BcaC07g41954' => 'bca', 'BcaC07g41955' => 'bca', 'BcaC07g41956' => 'bca', 'BcaC07g42519' => 'bca', 'BcaC07g42520' => 'bca', 'BcaC07g42523' => 'bca', 'BcaC07g42524' => 'bca', 'BcaC07g42525' => 'bca', 'BcaC08g47480' => 'bca', 'BcaC08g47481' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00530' => 'bna', 'BolC2t07178H' => 'bol', 'BolC3t16567H' => 'bol', 'BolC4t27234H' => 'bol', 'BolC5t29728H' => 'bol', 'BolC5t34622H' => 'bol', 'BolC6t40321H' => 'bol', 'BolC7t42028H' => 'bol', 'BolC8t49125H' => 'bol', 'BolC8t52538H' => 'bol', 'BolC8t52539H' => 'bol', 'BolC9t56681H' => 'bol', 'BolC9t58266H' => 'bol', 'BolSC21t60294H' => 'bol', 'BraA02t05670Z' => 'bra', 'BraA03t12716Z' => 'bra', 'BraA04t17685Z' => 'bra', 'BraA05t22788Z' => 'bra', 'BraA06t24032Z' => 'bra', 'BraA06t25625Z' => 'bra', 'BraA07t27930Z' => 'bra', 'BraA08t35242Z' => 'bra', 'BraA09t38609Z' => 'bra', 'BraA10t43905Z' => 'bra', 'C02p11060' => 'bna', 'C03p42990' => 'bna', 'C03p67310' => 'bna', 'C04p56990' => 'bna', 'C04p58660' => 'bna', 'C05p09890' => 'bna', 'C05p59680' => 'bna', 'C06p19830' => 'bna', 'C06p53040' => 'bna', 'C07p15230' => 'bna', 'C08p50070' => 'bna', 'C08p50090' => 'bna', 'C09p38330' => 'bna', 'C09p53940' => 'bna', 'CAN.G1014.1' => 'can', 'CAN.G644.30' => 'can', 'CAN.G84.47' => 'can', 'CAN.G919.8' => 'can', 'CANSAT54G0113' => 'cansat', 'CANSAT54G1286' => 'cansat', 'CANSAT64G1020' => 'cansat', 'CARHR008080' => 'chi', 'CARHR008090' => 'chi', 'CARHR012130' => 'chi', 'CARHR038390' => 'chi', 'CARHR082330' => 'chi', 'CARHR120520' => 'chi', 'CARHR151470' => 'chi', 'CARHR190950' => 'chi', 'Carub.0001s0760' => 'cru', 'Carub.0001s1146' => 'cru', 'Carub.0003s0721' => 'cru', 'Carub.0004s0858' => 'cru', 'Carub.0005s1040' => 'cru', 'Carub.0006s2035' => 'cru', 'Carub.0015s0005' => 'cru', 'Ca_01607_v3' => 'car', 'Ca_01677_v3' => 'car', 'Ca_06087_v3' => 'car', 'Ca_19238_v3' => 'car', 'Ca_19373_v3' => 'car', 'Ca_21079_v3' => 'car', 'CBR_g54016' => 'cbr', 'CBR_g54018' => 'cbr', 'CBR_g54020' => 'cbr', 'Cc01_g09780' => 'ccan', 'Cc01_g11680' => 'ccan', 'Cc02_g15610' => 'ccan', 'Cc05_g04350' => 'ccan', 'Cc09_g01580' => 'ccan', 'CDE01G0795' => 'cde', 'CDE02G2024' => 'cde', 'CDE02G2260' => 'cde', 'CDE02G4561' => 'cde', 'CDE05G2733' => 'cde', 'CDE05G3422' => 'cde', 'CDE06G2003' => 'cde', 'CDE08G0576' => 'cde', 'CDE09G0048' => 'cde', 'CDE11G0805' => 'cde', 'Cfa003644' => 'cfa', 'Cfa006290' => 'cfa', 'Cfa010080' => 'cfa', 'Cfa011376' => 'cfa', 'Cfa011576' => 'cfa', 'Cfa011577' => 'cfa', 'Cfa014389' => 'cfa', 'Ciclev10006044m.g' => 'ccl', 'Ciclev10006954m.g' => 'ccl', 'Ciclev10015131m.g' => 'ccl', 'Ciclev10015580m.g' => 'ccl', 'Ciclev10028359m.g' => 'ccl', 'Ciclev10028573m.g' => 'ccl', 'CiPaw.03G159300' => 'cil', 'CiPaw.04G115100' => 'cil', 'CiPaw.09G092800' => 'cil', 'CiPaw.10G071800' => 'cil', 'CiPaw.13G105800' => 'cil', 'CiPaw.13G141000' => 'cil', 'CiPaw.14G103400' => 'cil', 'ClCG01G012700' => 'cla', 'ClCG01G012720' => 'cla', 'ClCG01G021920' => 'cla', 'ClCG02G008870' => 'cla', 'ClCG02G020840' => 'cla', 'ClCG02G021930' => 'cla', 'COL.COLO4_19302' => 'col', 'COL.COLO4_25262' => 'col', 'COL.COLO4_31788' => 'col', 'Cpa.g.c34684' => 'cpa', 'Cpa.g.c36520.1' => 'cpa', 'Cpa.g.c45626' => 'cpa', 'Cpa.g.sc121.17' => 'cpa', 'Cpa.g.sc13.22' => 'cpa', 'Cpa.g.sc87.88' => 'cpa', 'Cre06.g261800' => 'cre', 'CsaV3_1G014500' => 'csa', 'CsaV3_1G014510' => 'csa', 'CsaV3_2G034880' => 'csa', 'CsaV3_6G014760' => 'csa', 'CsaV3_6G021500' => 'csa', 'CsaV3_6G048980' => 'csa', 'CSS0002511' => 'camsi', 'CSS0007556' => 'camsi', 'CSS0008532' => 'camsi', 'CSS0009709' => 'camsi', 'CSS0010486' => 'camsi', 'CSS0016768' => 'camsi', 'CSS0023512' => 'camsi', 'CSS0025341' => 'camsi', 'CSS0027999' => 'camsi', 'CSS0028944' => 'camsi', 'CSS0032292' => 'camsi', 'CSS0032464' => 'camsi', 'CSS0037153' => 'camsi', 'CSS0039256' => 'camsi', 'CSS0048392' => 'camsi', 'CSS0050458' => 'camsi', 'DCAR_004224' => 'dca', 'DCAR_006147' => 'dca', 'DCAR_006465' => 'dca', 'DCAR_008159' => 'dca', 'DCAR_012164' => 'dca', 'DCAR_019764' => 'dca', 'Dinv05418' => 'din', 'Dinv10839' => 'din', 'Dinv12521' => 'din', 'Dinv13900' => 'din', 'Dinv29426' => 'din', 'Duzib150G0263' => 'dzi', 'Duzib168G1178' => 'dzi', 'Duzib168G1924' => 'dzi', 'Duzib170G0299' => 'dzi', 'Duzib170G0813' => 'dzi', 'Duzib235G1128' => 'dzi', 'Duzib248G1060' => 'dzi', 'ECA232G1910' => 'eca', 'ECA233G4621' => 'eca', 'ECA238G1216' => 'eca', 'ECA238G1784' => 'eca', 'ECA248G1242' => 'eca', 'EL10Ac8g20071' => 'bvu', 'EL10Ac9g21086' => 'bvu', 'EL10Ac9g22407' => 'bvu', 'EL10Ac9g22412' => 'bvu', 'Eucgr.A01119' => 'egr', 'Eucgr.E04043' => 'egr', 'Eucgr.J00428' => 'egr', 'Eucgr.J00958' => 'egr', 'FAN11G3091' => 'fan', 'FAN11G3651' => 'fan', 'FAN16G2566' => 'fan', 'FAN21G3155' => 'fan', 'FAN21G3400' => 'fan', 'FAN21G3543' => 'fan', 'FAN25G0234' => 'fan', 'FAN25G1422' => 'fan', 'FAN25G3392' => 'fan', 'FvH4_3g01940' => 'fve', 'FvH4_3g29870' => 'fve', 'FvH4_3g33680' => 'fve', 'Glyma.09G004200' => 'gma', 'Glyma.11G151288' => 'gma', 'Glyma.11G189100' => 'gma', 'Glyma.12G072500' => 'gma', 'Glyma.12G085500' => 'gma', 'Glyma.12G181800' => 'gma', 'Glyma.12G193000' => 'gma', 'Glyma.13G309300' => 'gma', 'Glyma.13G319000' => 'gma', 'Glyma.17G012600' => 'gma', 'Gohir.A06G148600' => 'ghi', 'Gohir.A07G115800' => 'ghi', 'Gohir.A08G003600' => 'ghi', 'Gohir.A09G093300' => 'ghi', 'Gohir.A09G105400' => 'ghi', 'Gohir.A09G105500' => 'ghi', 'Gohir.D06G154600' => 'ghi', 'Gohir.D07G120200' => 'ghi', 'Gohir.D08G013900' => 'ghi', 'Gohir.D09G093100' => 'ghi', 'Gohir.D09G102200' => 'ghi', 'Gohir.D09G102300' => 'ghi', 'Gorai.001G129400' => 'gra', 'Gorai.004G008200' => 'gra', 'Gorai.006G109800' => 'gra', 'Gorai.006G119500' => 'gra', 'Gorai.006G121300' => 'gra', 'Gorai.010G180700' => 'gra', 'GSVIVG01012716001' => 'vvi', 'GSVIVG01025118001' => 'vvi', 'GSVIVG01030439001' => 'vvi', 'GSVIVG01031397001' => 'vvi', 'HanXRQChr01g0004201' => 'han', 'HanXRQChr02g0054941' => 'han', 'HanXRQChr05g0141811' => 'han', 'HanXRQChr07g0197751' => 'han', 'HanXRQChr11g0346691' => 'han', 'HanXRQChr13g0396971' => 'han', 'HanXRQChr14g0432951' => 'han', 'HanXRQChr14g0452001' => 'han', 'HanXRQChr15g0496681' => 'han', 'HanXRQChr17g0557491' => 'han', 'HanXRQChr17g0557501' => 'han', 'Haze_06809' => 'cav', 'Haze_12852' => 'cav', 'Haze_15850' => 'cav', 'Haze_23446' => 'cav', 'Haze_23942' => 'cav', 'Haze_23943' => 'cav', 'Hma1.2p1_0091F.1_g046450' => 'hma', 'Hma1.2p1_0128F.1_g059910' => 'hma', 'Hma1.2p1_0249F.1_g102260' => 'hma', 'Hma1.2p1_0453F.1_g156190' => 'hma', 'Hma1.2p1_0695F.1_g204380' => 'hma', 'Hma1.2p1_0749F.1_g212650' => 'hma', 'Hma1.2p1_2156F.1_g315420' => 'hma', 'Hma1.2p1_2686F.1_g326940' => 'hma', 'HPP92_006428' => 'vpl', 'HPP92_012069' => 'vpl', 'HPP92_014129' => 'vpl', 'HPP92_014133' => 'vpl', 'HPP92_017315' => 'vpl', 'HPP92_026445' => 'vpl', 'HPP92_026446' => 'vpl', 'Hund00774' => 'sun', 'Hund07682' => 'sun', 'Hund21413' => 'sun', 'Hund23462' => 'sun', 'Hund23463' => 'sun', 'Lalb_Chr03g0027911' => 'lal', 'Lalb_Chr13g0304271' => 'lal', 'Lalb_Chr19g0137471' => 'lal', 'Lalb_Chr22g0350651' => 'lal', 'Lalb_Chr24g0395151' => 'lal', 'Lj1A1231T40' => 'lonja', 'Lj1A221T48' => 'lonja', 'Lj1C924T12' => 'lonja', 'Lj2C993G6' => 'lonja', 'Lj3g0005790' => 'lja', 'Lj3g0015432' => 'lja', 'Lj3g0017722' => 'lja', 'Lj3g0018497' => 'lja', 'Lj4g0025071' => 'lja', 'Lsat_1_v5_gn_1_129680' => 'lsa', 'Lsat_1_v5_gn_2_25321' => 'lsa', 'Lsat_1_v5_gn_2_95461' => 'lsa', 'Lsat_1_v5_gn_4_159620' => 'lsa', 'Lsat_1_v5_gn_6_41301' => 'lsa', 'Lsat_1_v5_gn_6_74660' => 'lsa', 'Lsat_1_v5_gn_7_11520' => 'lsa', 'Lsat_1_v5_gn_9_67680' => 'lsa', 'Manes.04G008300' => 'mes', 'Manes.04G008400' => 'mes', 'Manes.04G026500' => 'mes', 'Manes.10G135300' => 'mes', 'Manes.11G157300' => 'mes', 'Manes.12G074000' => 'mes', 'Manes.16G006200' => 'mes', 'Manes.17G026400' => 'mes', 'Mapoly0024s0086' => 'mpo', 'Mapoly0024s0087' => 'mpo', 'Mapoly0071s0057' => 'mpo', 'Mapoly0204s0012' => 'mpo', 'MBI04_g37681_MAGBIO' => 'mbi', 'MBI05_g17779_MAGBIO' => 'mbi', 'MBI12_g31184_MAGBIO' => 'mbi', 'MBI17_g11083_MAGBIO' => 'mbi', 'MBI18_g03883_MAGBIO' => 'mbi', 'MBI18_g28940_MAGBIO' => 'mbi', 'MCO01G690' => 'mco', 'MD03G1109900' => 'mdo', 'MD03G1134800' => 'mdo', 'MD05G1348000' => 'mdo', 'MD10G1322400' => 'mdo', 'MD11G1123300' => 'mdo', 'MD11G1157600' => 'mdo', 'Medtr2g084875' => 'mtr', 'Medtr2g088130' => 'mtr', 'Medtr4g055310' => 'mtr', 'Medtr4g061070' => 'mtr', 'Medtr4g132250' => 'mtr', 'MELO3C004795.2' => 'cme', 'MELO3C004797.2' => 'cme', 'MELO3C007396.2' => 'cme', 'MELO3C019277.2' => 'cme', 'MELO3C021449.2' => 'cme', 'MELO3C025736.2' => 'cme', 'Migut.D02175' => 'egut', 'Migut.H01573' => 'egut', 'Migut.M01327' => 'egut', 'Migut.N02513' => 'egut', 'MSTRG.14638' => 'ama', 'MSTRG.18632' => 'ama', 'MSTRG.7203' => 'ama', 'Nitab4.5_0000533g0140' => 'nta', 'Nitab4.5_0000888g0150' => 'nta', 'Nitab4.5_0001453g0040' => 'nta', 'Nitab4.5_0002827g0090' => 'nta', 'Nitab4.5_0003082g0040' => 'nta', 'Nitab4.5_0007799g0040' => 'nta', 'Nitab4.5_0008983g0010' => 'nta', 'Nitab4.5_0009017g0020' => 'nta', 'Nn1g02132' => 'nnu', 'Nn1g03492' => 'nnu', 'Nn1g03493' => 'nnu', 'Nn1g03494' => 'nnu', 'Nn1g07164' => 'nnu', 'Nn1g07291' => 'nnu', 'Nn2g10655' => 'nnu', 'Nn2g11652' => 'nnu', 'Nn2g14008' => 'nnu', 'Nn3g17476' => 'nnu', 'Nn3g17477' => 'nnu', 'Nn4g22370' => 'nnu', 'Nn4g25255' => 'nnu', 'Nn5g27755' => 'nnu', 'Nn6g34260' => 'nnu', 'Nn6g35041' => 'nnu', 'Oeu005924.1' => 'oeu', 'Oeu008383.1' => 'oeu', 'Oeu014928.1' => 'oeu', 'Oeu019889.1' => 'oeu', 'Oeu022271.1' => 'oeu', 'Oeu025271.1' => 'oeu', 'Oeu036302.1' => 'oeu', 'Oeu044100.1' => 'oeu', 'Os01g0528300' => 'osa', 'Os03g0286200' => 'osa', 'Os04g0406600' => 'osa', 'Os07g0512000' => 'osa', 'Os07g0694600' => 'osa', 'Os08g0411000' => 'osa', 'Os09g0565700' => 'osa', 'Os09g0566050' => 'osa', 'Os10g0523700' => 'osa', 'Peaxi162Scf00002g00514' => 'pax', 'Peaxi162Scf00047g01817' => 'pax', 'Peaxi162Scf00114g00001' => 'pax', 'Peaxi162Scf00147g00613' => 'pax', 'Peaxi162Scf00389g00425' => 'pax', 'PGR042G1139' => 'pgr', 'PGR042G3273' => 'pgr', 'PGR102G2180' => 'pgr', 'PGR119G0234' => 'pgr', 'PGR119G0668' => 'pgr', 'PGSC0003DMG400007122' => 'stu', 'PGSC0003DMG400016478' => 'stu', 'PGSC0003DMG400025374' => 'stu', 'PGSC0003DMG400026536' => 'stu', 'Phvul.003G079600' => 'pvu', 'Phvul.005G115600' => 'pvu', 'Phvul.005G127100' => 'pvu', 'Phvul.006G149500' => 'pvu', 'Phvul.006G149600' => 'pvu', 'Phvul.011G071800' => 'pvu', 'Phvul.011G090400' => 'pvu', 'Potri.004G013400' => 'ptr', 'Potri.004G188100' => 'ptr', 'Potri.008G195500' => 'ptr', 'Potri.009G148800' => 'ptr', 'Potri.011G004700' => 'ptr', 'Pp3c17_22810' => 'ppa', 'Pp3c18_4480' => 'ppa', 'Pp3c19_13030' => 'ppa', 'Pp3c1_33620' => 'ppa', 'Pp3c2_9380' => 'ppa', 'PRCOL_00001023' => 'pco', 'Prupe.3G216300' => 'ppe', 'Prupe.4G019500' => 'ppe', 'Prupe.6G092500' => 'ppe', 'Prupe.6G119200' => 'ppe', 'Psat0s1945g0080' => 'psa', 'Psat0s4167g0040' => 'psa', 'Psat1g185800' => 'psa', 'Psat4g006440' => 'psa', 'Psat4g006480' => 'psa', 'Psat4g168120' => 'psa', 'Psat5g255680' => 'psa', 'Psat5g261760' => 'psa', 'Psat7g222120' => 'psa', 'PSO063G7252' => 'pso', 'PSO170G4778' => 'pso', 'PSO210G2249' => 'pso', 'PSO339G2411' => 'pso', 'PSO339G2457' => 'pso', 'PSO339G2854' => 'pso', 'PSO339G4288' => 'pso', 'PSO339G4615' => 'pso', 'PSO384G2796' => 'pso', 'PSO384G2940' => 'pso', 'PSO384G4227' => 'pso', 'PSO478G1425' => 'pso', 'PSO541G3863' => 'pso', 'PSO675G0507' => 'pso', 'PSO782G0338' => 'pso', 'PSO832G0644' => 'pso', 'QL01p013664' => 'qlo', 'QL01p036598' => 'qlo', 'QL05p072984' => 'qlo', 'QL08p005768' => 'qlo', 'QL08p032743' => 'qlo', 'QL93p0073_0439' => 'qlo', 'QL93p0073_0444' => 'qlo', 'RcHm_v2.0_Chr5g0002851' => 'rch', 'RcHm_v2.0_Chr5g0055201' => 'rch', 'RcHm_v2.0_Chr5g0061191' => 'rch', 'RcHm_v2.0_Chr7g0203231' => 'rch', 'Rhsim01G0208100' => 'rsi', 'Rhsim01G0208200' => 'rsi', 'Rhsim02G0106500' => 'rsi', 'Rhsim03G0107900' => 'rsi', 'Rhsim06G0163400' => 'rsi', 'Rhsim13G0105200' => 'rsi', 'Sabra04G0006300' => 'sbr', 'Sabra04G0127000' => 'sbr', 'Sabra08G0148700' => 'sbr', 'Sabra09G0117400' => 'sbr', 'SalBow1G3326' => 'sbo', 'SalBow3G3228' => 'sbo', 'SalBow6G1634' => 'sbo', 'SalBow6G3603' => 'sbo', 'SalBow6G5266' => 'sbo', 'SalBow7G2265' => 'sbo', 'SalBow8G0850' => 'sbo', 'SalBow8G2592' => 'sbo', 'Sc05g0009240' => 'sci', 'Sc12g0002300' => 'sci', 'Sc21g0000100' => 'sci', 'Sc21g0004720' => 'sci', 'Sed0002949' => 'sed', 'Sed0004114' => 'sed', 'Sed0004306' => 'sed', 'Sed0006172' => 'sed', 'Sed0008413' => 'sed', 'Sed0013809' => 'sed', 'Sed0019556' => 'sed', 'SEGI_03570' => 'sgi', 'SEGI_07859' => 'sgi', 'SEGI_15042' => 'sgi', 'SEGI_16263' => 'sgi', 'SEGI_16552' => 'sgi', 'SEGI_24331' => 'sgi', 'SEGI_27316' => 'sgi', 'SEGI_29521' => 'sgi', 'SEGI_41342' => 'sgi', 'SGA_v2.0_scaffold27G11617' => 'sas', 'SGA_v2.0_scaffold316G48428' => 'sas', 'SGA_v2.0_scaffold49G18261' => 'sas', 'SGA_v2.0_scaffold7G03831' => 'sas', 'SGA_v2.0_scaffold93G28359' => 'sas', 'SHI02210' => 'shi', 'SHI06028' => 'shi', 'SHI06321' => 'shi', 'SMO111G0012' => 'smo', 'SMO228G0080' => 'smo', 'SMO356G0756' => 'smo', 'Solyc02g080620.3' => 'sly', 'Solyc06g074530.1' => 'sly', 'Solyc11g066890.1' => 'sly', 'Solyc11g072520.3' => 'sly', 'Sopen02g025330' => 'spe', 'Sopen06g031000' => 'spe', 'Sopen09g008240' => 'spe', 'Sopen09g025210' => 'spe', 'Sopen11g026600' => 'spe', 'Sopen11g030170' => 'spe', 'Sp1g10420' => 'spa', 'Sp3g06570' => 'spa', 'Sp4g10660' => 'spa', 'Sp5g16460' => 'spa', 'Sp6g22710' => 'spa', 'TAR365G0112' => 'tar', 'TAR369G0717' => 'tar', 'TAR374G0976' => 'tar', 'TAR623G1128' => 'tar', 'TAR626G1937' => 'tar', 'TAR627G0123' => 'tar', 'TAR628G0305' => 'tar', 'TAR636G1176' => 'tar', 'TAR636G2442' => 'tar', 'THA.LOC104800556' => 'tha', 'THA.LOC104809501' => 'tha', 'THA.LOC104815126' => 'tha', 'THA.LOC104815732' => 'tha', 'THA.LOC104823528' => 'tha', 'Thecc.02G365600' => 'tca', 'Thecc.06G222300' => 'tca', 'Thecc.09G261800' => 'tca', 'Thecc.09G291400' => 'tca', 'Thhalv10003028m.g' => 'esa', 'Thhalv10007886m.g' => 'esa', 'Thhalv10016085m.g' => 'esa', 'Thhalv10016681m.g' => 'esa', 'Thhalv10020951m.g' => 'esa', 'TPR.G15598' => 'tpr', 'TPR.G29305' => 'tpr', 'TPR.G32395' => 'tpr', 'TPR.G36998' => 'tpr', 'TPR.G4227' => 'tpr', 'TWI18G1433' => 'twi', 'TWI31G0755' => 'twi', 'TWI38G0912' => 'twi', 'TWI75G1097' => 'twi', 'TWI75G1619' => 'twi', 'TWI79G1336' => 'twi', 'unitig_0.g943' => 'ugi', 'unitig_0.g944' => 'ugi', 'unitig_22.g6646' => 'ugi', 'unitig_37.g12681' => 'ugi', 'unitig_8.g3290' => 'ugi', 'vmacro03278' => 'vma', 'vmacro12197' => 'vma', 'vmacro14478' => 'vma', 'vmacro15787' => 'vma', 'vmacro15789' => 'vma', 'vmacro15790' => 'vma', 'vmacro15806' => 'vma', 'vmacro22907' => 'vma', 'vmacro22908' => 'vma', 'vmacro22909' => 'vma', 'vmacro23108' => 'vma', 'VMungo0540G0540' => 'vmu', 'VMungo0540G2468' => 'vmu', 'VMungo1080G0390' => 'vmu', 'VMungo1080G1165' => 'vmu', 'VMungo1127G0170' => 'vmu', 'VMungo1127G2099' => 'vmu', 'VMungo1215G3013' => 'vmu', 'Zm00001eb013110' => 'zma', 'Zm00001eb084260' => 'zma', 'Zm00001eb096110' => 'zma', 'Zm00001eb217510' => 'zma', 'Zm00001eb322550' => 'zma', 'Zm00001eb390770' => 'zma', 'Zm00001eb397170' => 'zma', 'Zm00001eb404610' => 'zma', 'Zm00001eb421790' => 'zma' ) $gf_id = 'HOM05D000911' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000911' ) $data_identifier = 'HOM05D000911' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 16, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 5, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 6, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 8, 'nnu' => (int) 16, 'oeu' => (int) 8, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 5, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 16, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421790' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000911', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27780' => 'bna', 'A03p35380' => 'bna', 'A04p21160' => 'bna', 'A05p40570' => 'bna', 'A06p26900' => 'bna', 'A08p33230' => 'bna', 'A09p65960' => 'bna', 'A10p18290' => 'bna', 'Aa31LG1G12990' => 'aar', 'Aa31LG1G2980' => 'aar', 'Aa31LG4G14320' => 'aar', 'Aa31LG7G11800' => 'aar', 'Aa31sc36G50' => 'aar', 'Aa31sc36G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3721' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5459' => 'aag', 'Actinidia03028' => 'ach', 'Actinidia03753' => 'ach', 'Actinidia04187' => 'ach', 'Actinidia05509' => 'ach', 'Actinidia24180' => 'ach', 'Actinidia26906' => 'ach', 'Actinidia37097' => 'ach', 'Actinidia38249' => 'ach', 'Ah.01g003470' => 'amhyb', 'Ah.01g004580' => 'amhyb', 'Ah.01g014850' => 'amhyb', 'Ah.01g016830' => 'amhyb', 'Ah.14g088000' => 'amhyb', 'AL1G22980' => 'aly', 'AL3G18990' => 'aly', 'AL4G22440' => 'aly', 'AL4G33180' => 'aly', 'AL5G22920' => 'aly', 'AL6G33660' => 'aly', 'AL8G20720' => 'aly', 'Aqoxy1G00935' => 'aox', 'Aqoxy1G02094' => 'aox', 'Aqoxy2G01239' => 'aox', 'Aqoxy4G01870' => 'aox', 'Aqoxy7G00450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.36ZVTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71EM27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5D6C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH3WRE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3NCM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RIM768' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YB5YRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z36GDV' => 'arhy', 'AT1G08250' => 'ath', 'AT1G11790' => 'ath', 'AT2G27820' => 'ath', 'AT3G07630' => 'ath', 'AT3G44720' => 'ath', 'AT5G22630' => 'ath', 'ATR0693G304' => 'atr', 'ATR0794G109' => 'atr', 'ATR0820G120' => 'atr', 'ATR1159G064' => 'atr', 'Atru.chr10.2239' => 'acertr', 'Atru.chr3.3371' => 'acertr', 'Atru.chr6.3202' => 'acertr', 'AUR62006499' => 'cqu', 'AUR62012718' => 'cqu', 'AUR62021938' => 'cqu', 'AUR62023932' => 'cqu', 'AUR62025034' => 'cqu', 'AUR62025035' => 'cqu', 'AUR62038307' => 'cqu', 'AUR62043466' => 'cqu', 'BcaB02g10748' => 'bca', 'BcaB03g13231' => 'bca', 'BcaB03g14689' => 'bca', 'BcaB05g22716' => 'bca', 'BcaB06g28172' => 'bca', 'BcaB08g36413' => 'bca', 'BcaC01g02186' => 'bca', 'BcaC01g04272' => 'bca', 'BcaC02g08080' => 'bca', 'BcaC02g08227' => 'bca', 'BcaC03g13901' => 'bca', 'BcaC04g19593' => 'bca', 'BcaC04g20874' => 'bca', 'BcaC05g29557' => 'bca', 'BcaC06g35505' => 'bca', 'BcaC07g41954' => 'bca', 'BcaC07g41955' => 'bca', 'BcaC07g41956' => 'bca', 'BcaC07g42519' => 'bca', 'BcaC07g42520' => 'bca', 'BcaC07g42523' => 'bca', 'BcaC07g42524' => 'bca', 'BcaC07g42525' => 'bca', 'BcaC08g47480' => 'bca', 'BcaC08g47481' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00530' => 'bna', 'BolC2t07178H' => 'bol', 'BolC3t16567H' => 'bol', 'BolC4t27234H' => 'bol', 'BolC5t29728H' => 'bol', 'BolC5t34622H' => 'bol', 'BolC6t40321H' => 'bol', 'BolC7t42028H' => 'bol', 'BolC8t49125H' => 'bol', 'BolC8t52538H' => 'bol', 'BolC8t52539H' => 'bol', 'BolC9t56681H' => 'bol', 'BolC9t58266H' => 'bol', 'BolSC21t60294H' => 'bol', 'BraA02t05670Z' => 'bra', 'BraA03t12716Z' => 'bra', 'BraA04t17685Z' => 'bra', 'BraA05t22788Z' => 'bra', 'BraA06t24032Z' => 'bra', 'BraA06t25625Z' => 'bra', 'BraA07t27930Z' => 'bra', 'BraA08t35242Z' => 'bra', 'BraA09t38609Z' => 'bra', 'BraA10t43905Z' => 'bra', 'C02p11060' => 'bna', 'C03p42990' => 'bna', 'C03p67310' => 'bna', 'C04p56990' => 'bna', 'C04p58660' => 'bna', 'C05p09890' => 'bna', 'C05p59680' => 'bna', 'C06p19830' => 'bna', 'C06p53040' => 'bna', 'C07p15230' => 'bna', 'C08p50070' => 'bna', 'C08p50090' => 'bna', 'C09p38330' => 'bna', 'C09p53940' => 'bna', 'CAN.G1014.1' => 'can', 'CAN.G644.30' => 'can', 'CAN.G84.47' => 'can', 'CAN.G919.8' => 'can', 'CANSAT54G0113' => 'cansat', 'CANSAT54G1286' => 'cansat', 'CANSAT64G1020' => 'cansat', 'CARHR008080' => 'chi', 'CARHR008090' => 'chi', 'CARHR012130' => 'chi', 'CARHR038390' => 'chi', 'CARHR082330' => 'chi', 'CARHR120520' => 'chi', 'CARHR151470' => 'chi', 'CARHR190950' => 'chi', 'Carub.0001s0760' => 'cru', 'Carub.0001s1146' => 'cru', 'Carub.0003s0721' => 'cru', 'Carub.0004s0858' => 'cru', 'Carub.0005s1040' => 'cru', 'Carub.0006s2035' => 'cru', 'Carub.0015s0005' => 'cru', 'Ca_01607_v3' => 'car', 'Ca_01677_v3' => 'car', 'Ca_06087_v3' => 'car', 'Ca_19238_v3' => 'car', 'Ca_19373_v3' => 'car', 'Ca_21079_v3' => 'car', 'CBR_g54016' => 'cbr', 'CBR_g54018' => 'cbr', 'CBR_g54020' => 'cbr', 'Cc01_g09780' => 'ccan', 'Cc01_g11680' => 'ccan', 'Cc02_g15610' => 'ccan', 'Cc05_g04350' => 'ccan', 'Cc09_g01580' => 'ccan', 'CDE01G0795' => 'cde', 'CDE02G2024' => 'cde', 'CDE02G2260' => 'cde', 'CDE02G4561' => 'cde', 'CDE05G2733' => 'cde', 'CDE05G3422' => 'cde', 'CDE06G2003' => 'cde', 'CDE08G0576' => 'cde', 'CDE09G0048' => 'cde', 'CDE11G0805' => 'cde', 'Cfa003644' => 'cfa', 'Cfa006290' => 'cfa', 'Cfa010080' => 'cfa', 'Cfa011376' => 'cfa', 'Cfa011576' => 'cfa', 'Cfa011577' => 'cfa', 'Cfa014389' => 'cfa', 'Ciclev10006044m.g' => 'ccl', 'Ciclev10006954m.g' => 'ccl', 'Ciclev10015131m.g' => 'ccl', 'Ciclev10015580m.g' => 'ccl', 'Ciclev10028359m.g' => 'ccl', 'Ciclev10028573m.g' => 'ccl', 'CiPaw.03G159300' => 'cil', 'CiPaw.04G115100' => 'cil', 'CiPaw.09G092800' => 'cil', 'CiPaw.10G071800' => 'cil', 'CiPaw.13G105800' => 'cil', 'CiPaw.13G141000' => 'cil', 'CiPaw.14G103400' => 'cil', 'ClCG01G012700' => 'cla', 'ClCG01G012720' => 'cla', 'ClCG01G021920' => 'cla', 'ClCG02G008870' => 'cla', 'ClCG02G020840' => 'cla', 'ClCG02G021930' => 'cla', 'COL.COLO4_19302' => 'col', 'COL.COLO4_25262' => 'col', 'COL.COLO4_31788' => 'col', 'Cpa.g.c34684' => 'cpa', 'Cpa.g.c36520.1' => 'cpa', 'Cpa.g.c45626' => 'cpa', 'Cpa.g.sc121.17' => 'cpa', 'Cpa.g.sc13.22' => 'cpa', 'Cpa.g.sc87.88' => 'cpa', 'Cre06.g261800' => 'cre', 'CsaV3_1G014500' => 'csa', 'CsaV3_1G014510' => 'csa', 'CsaV3_2G034880' => 'csa', 'CsaV3_6G014760' => 'csa', 'CsaV3_6G021500' => 'csa', 'CsaV3_6G048980' => 'csa', 'CSS0002511' => 'camsi', 'CSS0007556' => 'camsi', 'CSS0008532' => 'camsi', 'CSS0009709' => 'camsi', 'CSS0010486' => 'camsi', 'CSS0016768' => 'camsi', 'CSS0023512' => 'camsi', 'CSS0025341' => 'camsi', 'CSS0027999' => 'camsi', 'CSS0028944' => 'camsi', 'CSS0032292' => 'camsi', 'CSS0032464' => 'camsi', 'CSS0037153' => 'camsi', 'CSS0039256' => 'camsi', 'CSS0048392' => 'camsi', 'CSS0050458' => 'camsi', 'DCAR_004224' => 'dca', 'DCAR_006147' => 'dca', 'DCAR_006465' => 'dca', 'DCAR_008159' => 'dca', 'DCAR_012164' => 'dca', 'DCAR_019764' => 'dca', 'Dinv05418' => 'din', 'Dinv10839' => 'din', 'Dinv12521' => 'din', 'Dinv13900' => 'din', 'Dinv29426' => 'din', 'Duzib150G0263' => 'dzi', 'Duzib168G1178' => 'dzi', 'Duzib168G1924' => 'dzi', 'Duzib170G0299' => 'dzi', 'Duzib170G0813' => 'dzi', 'Duzib235G1128' => 'dzi', 'Duzib248G1060' => 'dzi', 'ECA232G1910' => 'eca', 'ECA233G4621' => 'eca', 'ECA238G1216' => 'eca', 'ECA238G1784' => 'eca', 'ECA248G1242' => 'eca', 'EL10Ac8g20071' => 'bvu', 'EL10Ac9g21086' => 'bvu', 'EL10Ac9g22407' => 'bvu', 'EL10Ac9g22412' => 'bvu', 'Eucgr.A01119' => 'egr', 'Eucgr.E04043' => 'egr', 'Eucgr.J00428' => 'egr', 'Eucgr.J00958' => 'egr', 'FAN11G3091' => 'fan', 'FAN11G3651' => 'fan', 'FAN16G2566' => 'fan', 'FAN21G3155' => 'fan', 'FAN21G3400' => 'fan', 'FAN21G3543' => 'fan', 'FAN25G0234' => 'fan', 'FAN25G1422' => 'fan', 'FAN25G3392' => 'fan', 'FvH4_3g01940' => 'fve', 'FvH4_3g29870' => 'fve', 'FvH4_3g33680' => 'fve', 'Glyma.09G004200' => 'gma', 'Glyma.11G151288' => 'gma', 'Glyma.11G189100' => 'gma', 'Glyma.12G072500' => 'gma', 'Glyma.12G085500' => 'gma', 'Glyma.12G181800' => 'gma', 'Glyma.12G193000' => 'gma', 'Glyma.13G309300' => 'gma', 'Glyma.13G319000' => 'gma', 'Glyma.17G012600' => 'gma', 'Gohir.A06G148600' => 'ghi', 'Gohir.A07G115800' => 'ghi', 'Gohir.A08G003600' => 'ghi', 'Gohir.A09G093300' => 'ghi', 'Gohir.A09G105400' => 'ghi', 'Gohir.A09G105500' => 'ghi', 'Gohir.D06G154600' => 'ghi', 'Gohir.D07G120200' => 'ghi', 'Gohir.D08G013900' => 'ghi', 'Gohir.D09G093100' => 'ghi', 'Gohir.D09G102200' => 'ghi', 'Gohir.D09G102300' => 'ghi', 'Gorai.001G129400' => 'gra', 'Gorai.004G008200' => 'gra', 'Gorai.006G109800' => 'gra', 'Gorai.006G119500' => 'gra', 'Gorai.006G121300' => 'gra', 'Gorai.010G180700' => 'gra', 'GSVIVG01012716001' => 'vvi', 'GSVIVG01025118001' => 'vvi', 'GSVIVG01030439001' => 'vvi', 'GSVIVG01031397001' => 'vvi', 'HanXRQChr01g0004201' => 'han', 'HanXRQChr02g0054941' => 'han', 'HanXRQChr05g0141811' => 'han', 'HanXRQChr07g0197751' => 'han', 'HanXRQChr11g0346691' => 'han', 'HanXRQChr13g0396971' => 'han', 'HanXRQChr14g0432951' => 'han', 'HanXRQChr14g0452001' => 'han', 'HanXRQChr15g0496681' => 'han', 'HanXRQChr17g0557491' => 'han', 'HanXRQChr17g0557501' => 'han', 'Haze_06809' => 'cav', 'Haze_12852' => 'cav', 'Haze_15850' => 'cav', 'Haze_23446' => 'cav', 'Haze_23942' => 'cav', 'Haze_23943' => 'cav', 'Hma1.2p1_0091F.1_g046450' => 'hma', 'Hma1.2p1_0128F.1_g059910' => 'hma', 'Hma1.2p1_0249F.1_g102260' => 'hma', 'Hma1.2p1_0453F.1_g156190' => 'hma', 'Hma1.2p1_0695F.1_g204380' => 'hma', 'Hma1.2p1_0749F.1_g212650' => 'hma', 'Hma1.2p1_2156F.1_g315420' => 'hma', 'Hma1.2p1_2686F.1_g326940' => 'hma', 'HPP92_006428' => 'vpl', 'HPP92_012069' => 'vpl', 'HPP92_014129' => 'vpl', 'HPP92_014133' => 'vpl', 'HPP92_017315' => 'vpl', 'HPP92_026445' => 'vpl', 'HPP92_026446' => 'vpl', 'Hund00774' => 'sun', 'Hund07682' => 'sun', 'Hund21413' => 'sun', 'Hund23462' => 'sun', 'Hund23463' => 'sun', 'Lalb_Chr03g0027911' => 'lal', 'Lalb_Chr13g0304271' => 'lal', 'Lalb_Chr19g0137471' => 'lal', 'Lalb_Chr22g0350651' => 'lal', 'Lalb_Chr24g0395151' => 'lal', 'Lj1A1231T40' => 'lonja', 'Lj1A221T48' => 'lonja', 'Lj1C924T12' => 'lonja', 'Lj2C993G6' => 'lonja', 'Lj3g0005790' => 'lja', 'Lj3g0015432' => 'lja', 'Lj3g0017722' => 'lja', 'Lj3g0018497' => 'lja', 'Lj4g0025071' => 'lja', 'Lsat_1_v5_gn_1_129680' => 'lsa', 'Lsat_1_v5_gn_2_25321' => 'lsa', 'Lsat_1_v5_gn_2_95461' => 'lsa', 'Lsat_1_v5_gn_4_159620' => 'lsa', 'Lsat_1_v5_gn_6_41301' => 'lsa', 'Lsat_1_v5_gn_6_74660' => 'lsa', 'Lsat_1_v5_gn_7_11520' => 'lsa', 'Lsat_1_v5_gn_9_67680' => 'lsa', 'Manes.04G008300' => 'mes', 'Manes.04G008400' => 'mes', 'Manes.04G026500' => 'mes', 'Manes.10G135300' => 'mes', 'Manes.11G157300' => 'mes', 'Manes.12G074000' => 'mes', 'Manes.16G006200' => 'mes', 'Manes.17G026400' => 'mes', 'Mapoly0024s0086' => 'mpo', 'Mapoly0024s0087' => 'mpo', 'Mapoly0071s0057' => 'mpo', 'Mapoly0204s0012' => 'mpo', 'MBI04_g37681_MAGBIO' => 'mbi', 'MBI05_g17779_MAGBIO' => 'mbi', 'MBI12_g31184_MAGBIO' => 'mbi', 'MBI17_g11083_MAGBIO' => 'mbi', 'MBI18_g03883_MAGBIO' => 'mbi', 'MBI18_g28940_MAGBIO' => 'mbi', 'MCO01G690' => 'mco', 'MD03G1109900' => 'mdo', 'MD03G1134800' => 'mdo', 'MD05G1348000' => 'mdo', 'MD10G1322400' => 'mdo', 'MD11G1123300' => 'mdo', 'MD11G1157600' => 'mdo', 'Medtr2g084875' => 'mtr', 'Medtr2g088130' => 'mtr', 'Medtr4g055310' => 'mtr', 'Medtr4g061070' => 'mtr', 'Medtr4g132250' => 'mtr', 'MELO3C004795.2' => 'cme', 'MELO3C004797.2' => 'cme', 'MELO3C007396.2' => 'cme', 'MELO3C019277.2' => 'cme', 'MELO3C021449.2' => 'cme', 'MELO3C025736.2' => 'cme', 'Migut.D02175' => 'egut', 'Migut.H01573' => 'egut', 'Migut.M01327' => 'egut', 'Migut.N02513' => 'egut', 'MSTRG.14638' => 'ama', 'MSTRG.18632' => 'ama', 'MSTRG.7203' => 'ama', 'Nitab4.5_0000533g0140' => 'nta', 'Nitab4.5_0000888g0150' => 'nta', 'Nitab4.5_0001453g0040' => 'nta', 'Nitab4.5_0002827g0090' => 'nta', 'Nitab4.5_0003082g0040' => 'nta', 'Nitab4.5_0007799g0040' => 'nta', 'Nitab4.5_0008983g0010' => 'nta', 'Nitab4.5_0009017g0020' => 'nta', 'Nn1g02132' => 'nnu', 'Nn1g03492' => 'nnu', 'Nn1g03493' => 'nnu', 'Nn1g03494' => 'nnu', 'Nn1g07164' => 'nnu', 'Nn1g07291' => 'nnu', 'Nn2g10655' => 'nnu', 'Nn2g11652' => 'nnu', 'Nn2g14008' => 'nnu', 'Nn3g17476' => 'nnu', 'Nn3g17477' => 'nnu', 'Nn4g22370' => 'nnu', 'Nn4g25255' => 'nnu', 'Nn5g27755' => 'nnu', 'Nn6g34260' => 'nnu', 'Nn6g35041' => 'nnu', 'Oeu005924.1' => 'oeu', 'Oeu008383.1' => 'oeu', 'Oeu014928.1' => 'oeu', 'Oeu019889.1' => 'oeu', 'Oeu022271.1' => 'oeu', 'Oeu025271.1' => 'oeu', 'Oeu036302.1' => 'oeu', 'Oeu044100.1' => 'oeu', 'Os01g0528300' => 'osa', 'Os03g0286200' => 'osa', 'Os04g0406600' => 'osa', 'Os07g0512000' => 'osa', 'Os07g0694600' => 'osa', 'Os08g0411000' => 'osa', 'Os09g0565700' => 'osa', 'Os09g0566050' => 'osa', 'Os10g0523700' => 'osa', 'Peaxi162Scf00002g00514' => 'pax', 'Peaxi162Scf00047g01817' => 'pax', 'Peaxi162Scf00114g00001' => 'pax', 'Peaxi162Scf00147g00613' => 'pax', 'Peaxi162Scf00389g00425' => 'pax', 'PGR042G1139' => 'pgr', 'PGR042G3273' => 'pgr', 'PGR102G2180' => 'pgr', 'PGR119G0234' => 'pgr', 'PGR119G0668' => 'pgr', 'PGSC0003DMG400007122' => 'stu', 'PGSC0003DMG400016478' => 'stu', 'PGSC0003DMG400025374' => 'stu', 'PGSC0003DMG400026536' => 'stu', 'Phvul.003G079600' => 'pvu', 'Phvul.005G115600' => 'pvu', 'Phvul.005G127100' => 'pvu', 'Phvul.006G149500' => 'pvu', 'Phvul.006G149600' => 'pvu', 'Phvul.011G071800' => 'pvu', 'Phvul.011G090400' => 'pvu', 'Potri.004G013400' => 'ptr', 'Potri.004G188100' => 'ptr', 'Potri.008G195500' => 'ptr', 'Potri.009G148800' => 'ptr', 'Potri.011G004700' => 'ptr', 'Pp3c17_22810' => 'ppa', 'Pp3c18_4480' => 'ppa', 'Pp3c19_13030' => 'ppa', 'Pp3c1_33620' => 'ppa', 'Pp3c2_9380' => 'ppa', 'PRCOL_00001023' => 'pco', 'Prupe.3G216300' => 'ppe', 'Prupe.4G019500' => 'ppe', 'Prupe.6G092500' => 'ppe', 'Prupe.6G119200' => 'ppe', 'Psat0s1945g0080' => 'psa', 'Psat0s4167g0040' => 'psa', 'Psat1g185800' => 'psa', 'Psat4g006440' => 'psa', 'Psat4g006480' => 'psa', 'Psat4g168120' => 'psa', 'Psat5g255680' => 'psa', 'Psat5g261760' => 'psa', 'Psat7g222120' => 'psa', 'PSO063G7252' => 'pso', 'PSO170G4778' => 'pso', 'PSO210G2249' => 'pso', 'PSO339G2411' => 'pso', 'PSO339G2457' => 'pso', 'PSO339G2854' => 'pso', 'PSO339G4288' => 'pso', 'PSO339G4615' => 'pso', 'PSO384G2796' => 'pso', 'PSO384G2940' => 'pso', 'PSO384G4227' => 'pso', 'PSO478G1425' => 'pso', 'PSO541G3863' => 'pso', 'PSO675G0507' => 'pso', 'PSO782G0338' => 'pso', 'PSO832G0644' => 'pso', 'QL01p013664' => 'qlo', 'QL01p036598' => 'qlo', 'QL05p072984' => 'qlo', 'QL08p005768' => 'qlo', 'QL08p032743' => 'qlo', 'QL93p0073_0439' => 'qlo', 'QL93p0073_0444' => 'qlo', 'RcHm_v2.0_Chr5g0002851' => 'rch', 'RcHm_v2.0_Chr5g0055201' => 'rch', 'RcHm_v2.0_Chr5g0061191' => 'rch', 'RcHm_v2.0_Chr7g0203231' => 'rch', 'Rhsim01G0208100' => 'rsi', 'Rhsim01G0208200' => 'rsi', 'Rhsim02G0106500' => 'rsi', 'Rhsim03G0107900' => 'rsi', 'Rhsim06G0163400' => 'rsi', 'Rhsim13G0105200' => 'rsi', 'Sabra04G0006300' => 'sbr', 'Sabra04G0127000' => 'sbr', 'Sabra08G0148700' => 'sbr', 'Sabra09G0117400' => 'sbr', 'SalBow1G3326' => 'sbo', 'SalBow3G3228' => 'sbo', 'SalBow6G1634' => 'sbo', 'SalBow6G3603' => 'sbo', 'SalBow6G5266' => 'sbo', 'SalBow7G2265' => 'sbo', 'SalBow8G0850' => 'sbo', 'SalBow8G2592' => 'sbo', 'Sc05g0009240' => 'sci', 'Sc12g0002300' => 'sci', 'Sc21g0000100' => 'sci', 'Sc21g0004720' => 'sci', 'Sed0002949' => 'sed', 'Sed0004114' => 'sed', 'Sed0004306' => 'sed', 'Sed0006172' => 'sed', 'Sed0008413' => 'sed', 'Sed0013809' => 'sed', 'Sed0019556' => 'sed', 'SEGI_03570' => 'sgi', 'SEGI_07859' => 'sgi', 'SEGI_15042' => 'sgi', 'SEGI_16263' => 'sgi', 'SEGI_16552' => 'sgi', 'SEGI_24331' => 'sgi', 'SEGI_27316' => 'sgi', 'SEGI_29521' => 'sgi', 'SEGI_41342' => 'sgi', 'SGA_v2.0_scaffold27G11617' => 'sas', 'SGA_v2.0_scaffold316G48428' => 'sas', 'SGA_v2.0_scaffold49G18261' => 'sas', 'SGA_v2.0_scaffold7G03831' => 'sas', 'SGA_v2.0_scaffold93G28359' => 'sas', 'SHI02210' => 'shi', 'SHI06028' => 'shi', 'SHI06321' => 'shi', 'SMO111G0012' => 'smo', 'SMO228G0080' => 'smo', 'SMO356G0756' => 'smo', 'Solyc02g080620.3' => 'sly', 'Solyc06g074530.1' => 'sly', 'Solyc11g066890.1' => 'sly', 'Solyc11g072520.3' => 'sly', 'Sopen02g025330' => 'spe', 'Sopen06g031000' => 'spe', 'Sopen09g008240' => 'spe', 'Sopen09g025210' => 'spe', 'Sopen11g026600' => 'spe', 'Sopen11g030170' => 'spe', 'Sp1g10420' => 'spa', 'Sp3g06570' => 'spa', 'Sp4g10660' => 'spa', 'Sp5g16460' => 'spa', 'Sp6g22710' => 'spa', 'TAR365G0112' => 'tar', 'TAR369G0717' => 'tar', 'TAR374G0976' => 'tar', 'TAR623G1128' => 'tar', 'TAR626G1937' => 'tar', 'TAR627G0123' => 'tar', 'TAR628G0305' => 'tar', 'TAR636G1176' => 'tar', 'TAR636G2442' => 'tar', 'THA.LOC104800556' => 'tha', 'THA.LOC104809501' => 'tha', 'THA.LOC104815126' => 'tha', 'THA.LOC104815732' => 'tha', 'THA.LOC104823528' => 'tha', 'Thecc.02G365600' => 'tca', 'Thecc.06G222300' => 'tca', 'Thecc.09G261800' => 'tca', 'Thecc.09G291400' => 'tca', 'Thhalv10003028m.g' => 'esa', 'Thhalv10007886m.g' => 'esa', 'Thhalv10016085m.g' => 'esa', 'Thhalv10016681m.g' => 'esa', 'Thhalv10020951m.g' => 'esa', 'TPR.G15598' => 'tpr', 'TPR.G29305' => 'tpr', 'TPR.G32395' => 'tpr', 'TPR.G36998' => 'tpr', 'TPR.G4227' => 'tpr', 'TWI18G1433' => 'twi', 'TWI31G0755' => 'twi', 'TWI38G0912' => 'twi', 'TWI75G1097' => 'twi', 'TWI75G1619' => 'twi', 'TWI79G1336' => 'twi', 'unitig_0.g943' => 'ugi', 'unitig_0.g944' => 'ugi', 'unitig_22.g6646' => 'ugi', 'unitig_37.g12681' => 'ugi', 'unitig_8.g3290' => 'ugi', 'vmacro03278' => 'vma', 'vmacro12197' => 'vma', 'vmacro14478' => 'vma', 'vmacro15787' => 'vma', 'vmacro15789' => 'vma', 'vmacro15790' => 'vma', 'vmacro15806' => 'vma', 'vmacro22907' => 'vma', 'vmacro22908' => 'vma', 'vmacro22909' => 'vma', 'vmacro23108' => 'vma', 'VMungo0540G0540' => 'vmu', 'VMungo0540G2468' => 'vmu', 'VMungo1080G0390' => 'vmu', 'VMungo1080G1165' => 'vmu', 'VMungo1127G0170' => 'vmu', 'VMungo1127G2099' => 'vmu', 'VMungo1215G3013' => 'vmu', 'Zm00001eb013110' => 'zma', 'Zm00001eb084260' => 'zma', 'Zm00001eb096110' => 'zma', 'Zm00001eb217510' => 'zma', 'Zm00001eb322550' => 'zma', 'Zm00001eb390770' => 'zma', 'Zm00001eb397170' => 'zma', 'Zm00001eb404610' => 'zma', 'Zm00001eb421790' => 'zma' ), 'gf_id' => 'HOM05D000911', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000911' ), 'data_identifier' => 'HOM05D000911', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000911', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27780' => 'bna', 'A03p35380' => 'bna', 'A04p21160' => 'bna', 'A05p40570' => 'bna', 'A06p26900' => 'bna', 'A08p33230' => 'bna', 'A09p65960' => 'bna', 'A10p18290' => 'bna', 'Aa31LG1G12990' => 'aar', 'Aa31LG1G2980' => 'aar', 'Aa31LG4G14320' => 'aar', 'Aa31LG7G11800' => 'aar', 'Aa31sc36G50' => 'aar', 'Aa31sc36G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3721' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5459' => 'aag', 'Actinidia03028' => 'ach', 'Actinidia03753' => 'ach', 'Actinidia04187' => 'ach', 'Actinidia05509' => 'ach', 'Actinidia24180' => 'ach', 'Actinidia26906' => 'ach', 'Actinidia37097' => 'ach', 'Actinidia38249' => 'ach', 'Ah.01g003470' => 'amhyb', 'Ah.01g004580' => 'amhyb', 'Ah.01g014850' => 'amhyb', 'Ah.01g016830' => 'amhyb', 'Ah.14g088000' => 'amhyb', 'AL1G22980' => 'aly', 'AL3G18990' => 'aly', 'AL4G22440' => 'aly', 'AL4G33180' => 'aly', 'AL5G22920' => 'aly', 'AL6G33660' => 'aly', 'AL8G20720' => 'aly', 'Aqoxy1G00935' => 'aox', 'Aqoxy1G02094' => 'aox', 'Aqoxy2G01239' => 'aox', 'Aqoxy4G01870' => 'aox', 'Aqoxy7G00450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.36ZVTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71EM27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5D6C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH3WRE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3NCM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RIM768' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YB5YRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z36GDV' => 'arhy', 'AT1G08250' => 'ath', 'AT1G11790' => 'ath', 'AT2G27820' => 'ath', 'AT3G07630' => 'ath', 'AT3G44720' => 'ath', 'AT5G22630' => 'ath', 'ATR0693G304' => 'atr', 'ATR0794G109' => 'atr', 'ATR0820G120' => 'atr', 'ATR1159G064' => 'atr', 'Atru.chr10.2239' => 'acertr', 'Atru.chr3.3371' => 'acertr', 'Atru.chr6.3202' => 'acertr', 'AUR62006499' => 'cqu', 'AUR62012718' => 'cqu', 'AUR62021938' => 'cqu', 'AUR62023932' => 'cqu', 'AUR62025034' => 'cqu', 'AUR62025035' => 'cqu', 'AUR62038307' => 'cqu', 'AUR62043466' => 'cqu', 'BcaB02g10748' => 'bca', 'BcaB03g13231' => 'bca', 'BcaB03g14689' => 'bca', 'BcaB05g22716' => 'bca', 'BcaB06g28172' => 'bca', 'BcaB08g36413' => 'bca', 'BcaC01g02186' => 'bca', 'BcaC01g04272' => 'bca', 'BcaC02g08080' => 'bca', 'BcaC02g08227' => 'bca', 'BcaC03g13901' => 'bca', 'BcaC04g19593' => 'bca', 'BcaC04g20874' => 'bca', 'BcaC05g29557' => 'bca', 'BcaC06g35505' => 'bca', 'BcaC07g41954' => 'bca', 'BcaC07g41955' => 'bca', 'BcaC07g41956' => 'bca', 'BcaC07g42519' => 'bca', 'BcaC07g42520' => 'bca', 'BcaC07g42523' => 'bca', 'BcaC07g42524' => 'bca', 'BcaC07g42525' => 'bca', 'BcaC08g47480' => 'bca', 'BcaC08g47481' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00530' => 'bna', 'BolC2t07178H' => 'bol', 'BolC3t16567H' => 'bol', 'BolC4t27234H' => 'bol', 'BolC5t29728H' => 'bol', 'BolC5t34622H' => 'bol', 'BolC6t40321H' => 'bol', 'BolC7t42028H' => 'bol', 'BolC8t49125H' => 'bol', 'BolC8t52538H' => 'bol', 'BolC8t52539H' => 'bol', 'BolC9t56681H' => 'bol', 'BolC9t58266H' => 'bol', 'BolSC21t60294H' => 'bol', 'BraA02t05670Z' => 'bra', 'BraA03t12716Z' => 'bra', 'BraA04t17685Z' => 'bra', 'BraA05t22788Z' => 'bra', 'BraA06t24032Z' => 'bra', 'BraA06t25625Z' => 'bra', 'BraA07t27930Z' => 'bra', 'BraA08t35242Z' => 'bra', 'BraA09t38609Z' => 'bra', 'BraA10t43905Z' => 'bra', 'C02p11060' => 'bna', 'C03p42990' => 'bna', 'C03p67310' => 'bna', 'C04p56990' => 'bna', 'C04p58660' => 'bna', 'C05p09890' => 'bna', 'C05p59680' => 'bna', 'C06p19830' => 'bna', 'C06p53040' => 'bna', 'C07p15230' => 'bna', 'C08p50070' => 'bna', 'C08p50090' => 'bna', 'C09p38330' => 'bna', 'C09p53940' => 'bna', 'CAN.G1014.1' => 'can', 'CAN.G644.30' => 'can', 'CAN.G84.47' => 'can', 'CAN.G919.8' => 'can', 'CANSAT54G0113' => 'cansat', 'CANSAT54G1286' => 'cansat', 'CANSAT64G1020' => 'cansat', 'CARHR008080' => 'chi', 'CARHR008090' => 'chi', 'CARHR012130' => 'chi', 'CARHR038390' => 'chi', 'CARHR082330' => 'chi', 'CARHR120520' => 'chi', 'CARHR151470' => 'chi', 'CARHR190950' => 'chi', 'Carub.0001s0760' => 'cru', 'Carub.0001s1146' => 'cru', 'Carub.0003s0721' => 'cru', 'Carub.0004s0858' => 'cru', 'Carub.0005s1040' => 'cru', 'Carub.0006s2035' => 'cru', 'Carub.0015s0005' => 'cru', 'Ca_01607_v3' => 'car', 'Ca_01677_v3' => 'car', 'Ca_06087_v3' => 'car', 'Ca_19238_v3' => 'car', 'Ca_19373_v3' => 'car', 'Ca_21079_v3' => 'car', 'CBR_g54016' => 'cbr', 'CBR_g54018' => 'cbr', 'CBR_g54020' => 'cbr', 'Cc01_g09780' => 'ccan', 'Cc01_g11680' => 'ccan', 'Cc02_g15610' => 'ccan', 'Cc05_g04350' => 'ccan', 'Cc09_g01580' => 'ccan', 'CDE01G0795' => 'cde', 'CDE02G2024' => 'cde', 'CDE02G2260' => 'cde', 'CDE02G4561' => 'cde', 'CDE05G2733' => 'cde', 'CDE05G3422' => 'cde', 'CDE06G2003' => 'cde', 'CDE08G0576' => 'cde', 'CDE09G0048' => 'cde', 'CDE11G0805' => 'cde', 'Cfa003644' => 'cfa', 'Cfa006290' => 'cfa', 'Cfa010080' => 'cfa', 'Cfa011376' => 'cfa', 'Cfa011576' => 'cfa', 'Cfa011577' => 'cfa', 'Cfa014389' => 'cfa', 'Ciclev10006044m.g' => 'ccl', 'Ciclev10006954m.g' => 'ccl', 'Ciclev10015131m.g' => 'ccl', 'Ciclev10015580m.g' => 'ccl', 'Ciclev10028359m.g' => 'ccl', 'Ciclev10028573m.g' => 'ccl', 'CiPaw.03G159300' => 'cil', 'CiPaw.04G115100' => 'cil', 'CiPaw.09G092800' => 'cil', 'CiPaw.10G071800' => 'cil', 'CiPaw.13G105800' => 'cil', 'CiPaw.13G141000' => 'cil', 'CiPaw.14G103400' => 'cil', 'ClCG01G012700' => 'cla', 'ClCG01G012720' => 'cla', 'ClCG01G021920' => 'cla', 'ClCG02G008870' => 'cla', 'ClCG02G020840' => 'cla', 'ClCG02G021930' => 'cla', 'COL.COLO4_19302' => 'col', 'COL.COLO4_25262' => 'col', 'COL.COLO4_31788' => 'col', 'Cpa.g.c34684' => 'cpa', 'Cpa.g.c36520.1' => 'cpa', 'Cpa.g.c45626' => 'cpa', 'Cpa.g.sc121.17' => 'cpa', 'Cpa.g.sc13.22' => 'cpa', 'Cpa.g.sc87.88' => 'cpa', 'Cre06.g261800' => 'cre', 'CsaV3_1G014500' => 'csa', 'CsaV3_1G014510' => 'csa', 'CsaV3_2G034880' => 'csa', 'CsaV3_6G014760' => 'csa', 'CsaV3_6G021500' => 'csa', 'CsaV3_6G048980' => 'csa', 'CSS0002511' => 'camsi', 'CSS0007556' => 'camsi', 'CSS0008532' => 'camsi', 'CSS0009709' => 'camsi', 'CSS0010486' => 'camsi', 'CSS0016768' => 'camsi', 'CSS0023512' => 'camsi', 'CSS0025341' => 'camsi', 'CSS0027999' => 'camsi', 'CSS0028944' => 'camsi', 'CSS0032292' => 'camsi', 'CSS0032464' => 'camsi', 'CSS0037153' => 'camsi', 'CSS0039256' => 'camsi', 'CSS0048392' => 'camsi', 'CSS0050458' => 'camsi', 'DCAR_004224' => 'dca', 'DCAR_006147' => 'dca', 'DCAR_006465' => 'dca', 'DCAR_008159' => 'dca', 'DCAR_012164' => 'dca', 'DCAR_019764' => 'dca', 'Dinv05418' => 'din', 'Dinv10839' => 'din', 'Dinv12521' => 'din', 'Dinv13900' => 'din', 'Dinv29426' => 'din', 'Duzib150G0263' => 'dzi', 'Duzib168G1178' => 'dzi', 'Duzib168G1924' => 'dzi', 'Duzib170G0299' => 'dzi', 'Duzib170G0813' => 'dzi', 'Duzib235G1128' => 'dzi', 'Duzib248G1060' => 'dzi', 'ECA232G1910' => 'eca', 'ECA233G4621' => 'eca', 'ECA238G1216' => 'eca', 'ECA238G1784' => 'eca', 'ECA248G1242' => 'eca', 'EL10Ac8g20071' => 'bvu', 'EL10Ac9g21086' => 'bvu', 'EL10Ac9g22407' => 'bvu', 'EL10Ac9g22412' => 'bvu', 'Eucgr.A01119' => 'egr', 'Eucgr.E04043' => 'egr', 'Eucgr.J00428' => 'egr', 'Eucgr.J00958' => 'egr', 'FAN11G3091' => 'fan', 'FAN11G3651' => 'fan', 'FAN16G2566' => 'fan', 'FAN21G3155' => 'fan', 'FAN21G3400' => 'fan', 'FAN21G3543' => 'fan', 'FAN25G0234' => 'fan', 'FAN25G1422' => 'fan', 'FAN25G3392' => 'fan', 'FvH4_3g01940' => 'fve', 'FvH4_3g29870' => 'fve', 'FvH4_3g33680' => 'fve', 'Glyma.09G004200' => 'gma', 'Glyma.11G151288' => 'gma', 'Glyma.11G189100' => 'gma', 'Glyma.12G072500' => 'gma', 'Glyma.12G085500' => 'gma', 'Glyma.12G181800' => 'gma', 'Glyma.12G193000' => 'gma', 'Glyma.13G309300' => 'gma', 'Glyma.13G319000' => 'gma', 'Glyma.17G012600' => 'gma', 'Gohir.A06G148600' => 'ghi', 'Gohir.A07G115800' => 'ghi', 'Gohir.A08G003600' => 'ghi', 'Gohir.A09G093300' => 'ghi', 'Gohir.A09G105400' => 'ghi', 'Gohir.A09G105500' => 'ghi', 'Gohir.D06G154600' => 'ghi', 'Gohir.D07G120200' => 'ghi', 'Gohir.D08G013900' => 'ghi', 'Gohir.D09G093100' => 'ghi', 'Gohir.D09G102200' => 'ghi', 'Gohir.D09G102300' => 'ghi', 'Gorai.001G129400' => 'gra', 'Gorai.004G008200' => 'gra', 'Gorai.006G109800' => 'gra', 'Gorai.006G119500' => 'gra', 'Gorai.006G121300' => 'gra', 'Gorai.010G180700' => 'gra', 'GSVIVG01012716001' => 'vvi', 'GSVIVG01025118001' => 'vvi', 'GSVIVG01030439001' => 'vvi', 'GSVIVG01031397001' => 'vvi', 'HanXRQChr01g0004201' => 'han', 'HanXRQChr02g0054941' => 'han', 'HanXRQChr05g0141811' => 'han', 'HanXRQChr07g0197751' => 'han', 'HanXRQChr11g0346691' => 'han', 'HanXRQChr13g0396971' => 'han', 'HanXRQChr14g0432951' => 'han', 'HanXRQChr14g0452001' => 'han', 'HanXRQChr15g0496681' => 'han', 'HanXRQChr17g0557491' => 'han', 'HanXRQChr17g0557501' => 'han', 'Haze_06809' => 'cav', 'Haze_12852' => 'cav', 'Haze_15850' => 'cav', 'Haze_23446' => 'cav', 'Haze_23942' => 'cav', 'Haze_23943' => 'cav', 'Hma1.2p1_0091F.1_g046450' => 'hma', 'Hma1.2p1_0128F.1_g059910' => 'hma', 'Hma1.2p1_0249F.1_g102260' => 'hma', 'Hma1.2p1_0453F.1_g156190' => 'hma', 'Hma1.2p1_0695F.1_g204380' => 'hma', 'Hma1.2p1_0749F.1_g212650' => 'hma', 'Hma1.2p1_2156F.1_g315420' => 'hma', 'Hma1.2p1_2686F.1_g326940' => 'hma', 'HPP92_006428' => 'vpl', 'HPP92_012069' => 'vpl', 'HPP92_014129' => 'vpl', 'HPP92_014133' => 'vpl', 'HPP92_017315' => 'vpl', 'HPP92_026445' => 'vpl', 'HPP92_026446' => 'vpl', 'Hund00774' => 'sun', 'Hund07682' => 'sun', 'Hund21413' => 'sun', 'Hund23462' => 'sun', 'Hund23463' => 'sun', 'Lalb_Chr03g0027911' => 'lal', 'Lalb_Chr13g0304271' => 'lal', 'Lalb_Chr19g0137471' => 'lal', 'Lalb_Chr22g0350651' => 'lal', 'Lalb_Chr24g0395151' => 'lal', 'Lj1A1231T40' => 'lonja', 'Lj1A221T48' => 'lonja', 'Lj1C924T12' => 'lonja', 'Lj2C993G6' => 'lonja', 'Lj3g0005790' => 'lja', 'Lj3g0015432' => 'lja', 'Lj3g0017722' => 'lja', 'Lj3g0018497' => 'lja', 'Lj4g0025071' => 'lja', 'Lsat_1_v5_gn_1_129680' => 'lsa', 'Lsat_1_v5_gn_2_25321' => 'lsa', 'Lsat_1_v5_gn_2_95461' => 'lsa', 'Lsat_1_v5_gn_4_159620' => 'lsa', 'Lsat_1_v5_gn_6_41301' => 'lsa', 'Lsat_1_v5_gn_6_74660' => 'lsa', 'Lsat_1_v5_gn_7_11520' => 'lsa', 'Lsat_1_v5_gn_9_67680' => 'lsa', 'Manes.04G008300' => 'mes', 'Manes.04G008400' => 'mes', 'Manes.04G026500' => 'mes', 'Manes.10G135300' => 'mes', 'Manes.11G157300' => 'mes', 'Manes.12G074000' => 'mes', 'Manes.16G006200' => 'mes', 'Manes.17G026400' => 'mes', 'Mapoly0024s0086' => 'mpo', 'Mapoly0024s0087' => 'mpo', 'Mapoly0071s0057' => 'mpo', 'Mapoly0204s0012' => 'mpo', 'MBI04_g37681_MAGBIO' => 'mbi', 'MBI05_g17779_MAGBIO' => 'mbi', 'MBI12_g31184_MAGBIO' => 'mbi', 'MBI17_g11083_MAGBIO' => 'mbi', 'MBI18_g03883_MAGBIO' => 'mbi', 'MBI18_g28940_MAGBIO' => 'mbi', 'MCO01G690' => 'mco', 'MD03G1109900' => 'mdo', 'MD03G1134800' => 'mdo', 'MD05G1348000' => 'mdo', 'MD10G1322400' => 'mdo', 'MD11G1123300' => 'mdo', 'MD11G1157600' => 'mdo', 'Medtr2g084875' => 'mtr', 'Medtr2g088130' => 'mtr', 'Medtr4g055310' => 'mtr', 'Medtr4g061070' => 'mtr', 'Medtr4g132250' => 'mtr', 'MELO3C004795.2' => 'cme', 'MELO3C004797.2' => 'cme', 'MELO3C007396.2' => 'cme', 'MELO3C019277.2' => 'cme', 'MELO3C021449.2' => 'cme', 'MELO3C025736.2' => 'cme', 'Migut.D02175' => 'egut', 'Migut.H01573' => 'egut', 'Migut.M01327' => 'egut', 'Migut.N02513' => 'egut', 'MSTRG.14638' => 'ama', 'MSTRG.18632' => 'ama', 'MSTRG.7203' => 'ama', 'Nitab4.5_0000533g0140' => 'nta', 'Nitab4.5_0000888g0150' => 'nta', 'Nitab4.5_0001453g0040' => 'nta', 'Nitab4.5_0002827g0090' => 'nta', 'Nitab4.5_0003082g0040' => 'nta', 'Nitab4.5_0007799g0040' => 'nta', 'Nitab4.5_0008983g0010' => 'nta', 'Nitab4.5_0009017g0020' => 'nta', 'Nn1g02132' => 'nnu', 'Nn1g03492' => 'nnu', 'Nn1g03493' => 'nnu', 'Nn1g03494' => 'nnu', 'Nn1g07164' => 'nnu', 'Nn1g07291' => 'nnu', 'Nn2g10655' => 'nnu', 'Nn2g11652' => 'nnu', 'Nn2g14008' => 'nnu', 'Nn3g17476' => 'nnu', 'Nn3g17477' => 'nnu', 'Nn4g22370' => 'nnu', 'Nn4g25255' => 'nnu', 'Nn5g27755' => 'nnu', 'Nn6g34260' => 'nnu', 'Nn6g35041' => 'nnu', 'Oeu005924.1' => 'oeu', 'Oeu008383.1' => 'oeu', 'Oeu014928.1' => 'oeu', 'Oeu019889.1' => 'oeu', 'Oeu022271.1' => 'oeu', 'Oeu025271.1' => 'oeu', 'Oeu036302.1' => 'oeu', 'Oeu044100.1' => 'oeu', 'Os01g0528300' => 'osa', 'Os03g0286200' => 'osa', 'Os04g0406600' => 'osa', 'Os07g0512000' => 'osa', 'Os07g0694600' => 'osa', 'Os08g0411000' => 'osa', 'Os09g0565700' => 'osa', 'Os09g0566050' => 'osa', 'Os10g0523700' => 'osa', 'Peaxi162Scf00002g00514' => 'pax', 'Peaxi162Scf00047g01817' => 'pax', 'Peaxi162Scf00114g00001' => 'pax', 'Peaxi162Scf00147g00613' => 'pax', 'Peaxi162Scf00389g00425' => 'pax', 'PGR042G1139' => 'pgr', 'PGR042G3273' => 'pgr', 'PGR102G2180' => 'pgr', 'PGR119G0234' => 'pgr', 'PGR119G0668' => 'pgr', 'PGSC0003DMG400007122' => 'stu', 'PGSC0003DMG400016478' => 'stu', 'PGSC0003DMG400025374' => 'stu', 'PGSC0003DMG400026536' => 'stu', 'Phvul.003G079600' => 'pvu', 'Phvul.005G115600' => 'pvu', 'Phvul.005G127100' => 'pvu', 'Phvul.006G149500' => 'pvu', 'Phvul.006G149600' => 'pvu', 'Phvul.011G071800' => 'pvu', 'Phvul.011G090400' => 'pvu', 'Potri.004G013400' => 'ptr', 'Potri.004G188100' => 'ptr', 'Potri.008G195500' => 'ptr', 'Potri.009G148800' => 'ptr', 'Potri.011G004700' => 'ptr', 'Pp3c17_22810' => 'ppa', 'Pp3c18_4480' => 'ppa', 'Pp3c19_13030' => 'ppa', 'Pp3c1_33620' => 'ppa', 'Pp3c2_9380' => 'ppa', 'PRCOL_00001023' => 'pco', 'Prupe.3G216300' => 'ppe', 'Prupe.4G019500' => 'ppe', 'Prupe.6G092500' => 'ppe', 'Prupe.6G119200' => 'ppe', 'Psat0s1945g0080' => 'psa', 'Psat0s4167g0040' => 'psa', 'Psat1g185800' => 'psa', 'Psat4g006440' => 'psa', 'Psat4g006480' => 'psa', 'Psat4g168120' => 'psa', 'Psat5g255680' => 'psa', 'Psat5g261760' => 'psa', 'Psat7g222120' => 'psa', 'PSO063G7252' => 'pso', 'PSO170G4778' => 'pso', 'PSO210G2249' => 'pso', 'PSO339G2411' => 'pso', 'PSO339G2457' => 'pso', 'PSO339G2854' => 'pso', 'PSO339G4288' => 'pso', 'PSO339G4615' => 'pso', 'PSO384G2796' => 'pso', 'PSO384G2940' => 'pso', 'PSO384G4227' => 'pso', 'PSO478G1425' => 'pso', 'PSO541G3863' => 'pso', 'PSO675G0507' => 'pso', 'PSO782G0338' => 'pso', 'PSO832G0644' => 'pso', 'QL01p013664' => 'qlo', 'QL01p036598' => 'qlo', 'QL05p072984' => 'qlo', 'QL08p005768' => 'qlo', 'QL08p032743' => 'qlo', 'QL93p0073_0439' => 'qlo', 'QL93p0073_0444' => 'qlo', 'RcHm_v2.0_Chr5g0002851' => 'rch', 'RcHm_v2.0_Chr5g0055201' => 'rch', 'RcHm_v2.0_Chr5g0061191' => 'rch', 'RcHm_v2.0_Chr7g0203231' => 'rch', 'Rhsim01G0208100' => 'rsi', 'Rhsim01G0208200' => 'rsi', 'Rhsim02G0106500' => 'rsi', 'Rhsim03G0107900' => 'rsi', 'Rhsim06G0163400' => 'rsi', 'Rhsim13G0105200' => 'rsi', 'Sabra04G0006300' => 'sbr', 'Sabra04G0127000' => 'sbr', 'Sabra08G0148700' => 'sbr', 'Sabra09G0117400' => 'sbr', 'SalBow1G3326' => 'sbo', 'SalBow3G3228' => 'sbo', 'SalBow6G1634' => 'sbo', 'SalBow6G3603' => 'sbo', 'SalBow6G5266' => 'sbo', 'SalBow7G2265' => 'sbo', 'SalBow8G0850' => 'sbo', 'SalBow8G2592' => 'sbo', 'Sc05g0009240' => 'sci', 'Sc12g0002300' => 'sci', 'Sc21g0000100' => 'sci', 'Sc21g0004720' => 'sci', 'Sed0002949' => 'sed', 'Sed0004114' => 'sed', 'Sed0004306' => 'sed', 'Sed0006172' => 'sed', 'Sed0008413' => 'sed', 'Sed0013809' => 'sed', 'Sed0019556' => 'sed', 'SEGI_03570' => 'sgi', 'SEGI_07859' => 'sgi', 'SEGI_15042' => 'sgi', 'SEGI_16263' => 'sgi', 'SEGI_16552' => 'sgi', 'SEGI_24331' => 'sgi', 'SEGI_27316' => 'sgi', 'SEGI_29521' => 'sgi', 'SEGI_41342' => 'sgi', 'SGA_v2.0_scaffold27G11617' => 'sas', 'SGA_v2.0_scaffold316G48428' => 'sas', 'SGA_v2.0_scaffold49G18261' => 'sas', 'SGA_v2.0_scaffold7G03831' => 'sas', 'SGA_v2.0_scaffold93G28359' => 'sas', 'SHI02210' => 'shi', 'SHI06028' => 'shi', 'SHI06321' => 'shi', 'SMO111G0012' => 'smo', 'SMO228G0080' => 'smo', 'SMO356G0756' => 'smo', 'Solyc02g080620.3' => 'sly', 'Solyc06g074530.1' => 'sly', 'Solyc11g066890.1' => 'sly', 'Solyc11g072520.3' => 'sly', 'Sopen02g025330' => 'spe', 'Sopen06g031000' => 'spe', 'Sopen09g008240' => 'spe', 'Sopen09g025210' => 'spe', 'Sopen11g026600' => 'spe', 'Sopen11g030170' => 'spe', 'Sp1g10420' => 'spa', 'Sp3g06570' => 'spa', 'Sp4g10660' => 'spa', 'Sp5g16460' => 'spa', 'Sp6g22710' => 'spa', 'TAR365G0112' => 'tar', 'TAR369G0717' => 'tar', 'TAR374G0976' => 'tar', 'TAR623G1128' => 'tar', 'TAR626G1937' => 'tar', 'TAR627G0123' => 'tar', 'TAR628G0305' => 'tar', 'TAR636G1176' => 'tar', 'TAR636G2442' => 'tar', 'THA.LOC104800556' => 'tha', 'THA.LOC104809501' => 'tha', 'THA.LOC104815126' => 'tha', 'THA.LOC104815732' => 'tha', 'THA.LOC104823528' => 'tha', 'Thecc.02G365600' => 'tca', 'Thecc.06G222300' => 'tca', 'Thecc.09G261800' => 'tca', 'Thecc.09G291400' => 'tca', 'Thhalv10003028m.g' => 'esa', 'Thhalv10007886m.g' => 'esa', 'Thhalv10016085m.g' => 'esa', 'Thhalv10016681m.g' => 'esa', 'Thhalv10020951m.g' => 'esa', 'TPR.G15598' => 'tpr', 'TPR.G29305' => 'tpr', 'TPR.G32395' => 'tpr', 'TPR.G36998' => 'tpr', 'TPR.G4227' => 'tpr', 'TWI18G1433' => 'twi', 'TWI31G0755' => 'twi', 'TWI38G0912' => 'twi', 'TWI75G1097' => 'twi', 'TWI75G1619' => 'twi', 'TWI79G1336' => 'twi', 'unitig_0.g943' => 'ugi', 'unitig_0.g944' => 'ugi', 'unitig_22.g6646' => 'ugi', 'unitig_37.g12681' => 'ugi', 'unitig_8.g3290' => 'ugi', 'vmacro03278' => 'vma', 'vmacro12197' => 'vma', 'vmacro14478' => 'vma', 'vmacro15787' => 'vma', 'vmacro15789' => 'vma', 'vmacro15790' => 'vma', 'vmacro15806' => 'vma', 'vmacro22907' => 'vma', 'vmacro22908' => 'vma', 'vmacro22909' => 'vma', 'vmacro23108' => 'vma', 'VMungo0540G0540' => 'vmu', 'VMungo0540G2468' => 'vmu', 'VMungo1080G0390' => 'vmu', 'VMungo1080G1165' => 'vmu', 'VMungo1127G0170' => 'vmu', 'VMungo1127G2099' => 'vmu', 'VMungo1215G3013' => 'vmu', 'Zm00001eb013110' => 'zma', 'Zm00001eb084260' => 'zma', 'Zm00001eb096110' => 'zma', 'Zm00001eb217510' => 'zma', 'Zm00001eb322550' => 'zma', 'Zm00001eb390770' => 'zma', 'Zm00001eb397170' => 'zma', 'Zm00001eb404610' => 'zma', 'Zm00001eb421790' => 'zma' ) $gf_id = 'HOM05D000911' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000911' ) $data_identifier = 'HOM05D000911' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 16, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 5, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 6, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 8, 'nnu' => (int) 16, 'oeu' => (int) 8, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 5, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 16, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421790' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000911', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27780' => 'bna', 'A03p35380' => 'bna', 'A04p21160' => 'bna', 'A05p40570' => 'bna', 'A06p26900' => 'bna', 'A08p33230' => 'bna', 'A09p65960' => 'bna', 'A10p18290' => 'bna', 'Aa31LG1G12990' => 'aar', 'Aa31LG1G2980' => 'aar', 'Aa31LG4G14320' => 'aar', 'Aa31LG7G11800' => 'aar', 'Aa31sc36G50' => 'aar', 'Aa31sc36G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3721' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5459' => 'aag', 'Actinidia03028' => 'ach', 'Actinidia03753' => 'ach', 'Actinidia04187' => 'ach', 'Actinidia05509' => 'ach', 'Actinidia24180' => 'ach', 'Actinidia26906' => 'ach', 'Actinidia37097' => 'ach', 'Actinidia38249' => 'ach', 'Ah.01g003470' => 'amhyb', 'Ah.01g004580' => 'amhyb', 'Ah.01g014850' => 'amhyb', 'Ah.01g016830' => 'amhyb', 'Ah.14g088000' => 'amhyb', 'AL1G22980' => 'aly', 'AL3G18990' => 'aly', 'AL4G22440' => 'aly', 'AL4G33180' => 'aly', 'AL5G22920' => 'aly', 'AL6G33660' => 'aly', 'AL8G20720' => 'aly', 'Aqoxy1G00935' => 'aox', 'Aqoxy1G02094' => 'aox', 'Aqoxy2G01239' => 'aox', 'Aqoxy4G01870' => 'aox', 'Aqoxy7G00450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.36ZVTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71EM27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5D6C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH3WRE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3NCM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RIM768' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YB5YRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z36GDV' => 'arhy', 'AT1G08250' => 'ath', 'AT1G11790' => 'ath', 'AT2G27820' => 'ath', 'AT3G07630' => 'ath', 'AT3G44720' => 'ath', 'AT5G22630' => 'ath', 'ATR0693G304' => 'atr', 'ATR0794G109' => 'atr', 'ATR0820G120' => 'atr', 'ATR1159G064' => 'atr', 'Atru.chr10.2239' => 'acertr', 'Atru.chr3.3371' => 'acertr', 'Atru.chr6.3202' => 'acertr', 'AUR62006499' => 'cqu', 'AUR62012718' => 'cqu', 'AUR62021938' => 'cqu', 'AUR62023932' => 'cqu', 'AUR62025034' => 'cqu', 'AUR62025035' => 'cqu', 'AUR62038307' => 'cqu', 'AUR62043466' => 'cqu', 'BcaB02g10748' => 'bca', 'BcaB03g13231' => 'bca', 'BcaB03g14689' => 'bca', 'BcaB05g22716' => 'bca', 'BcaB06g28172' => 'bca', 'BcaB08g36413' => 'bca', 'BcaC01g02186' => 'bca', 'BcaC01g04272' => 'bca', 'BcaC02g08080' => 'bca', 'BcaC02g08227' => 'bca', 'BcaC03g13901' => 'bca', 'BcaC04g19593' => 'bca', 'BcaC04g20874' => 'bca', 'BcaC05g29557' => 'bca', 'BcaC06g35505' => 'bca', 'BcaC07g41954' => 'bca', 'BcaC07g41955' => 'bca', 'BcaC07g41956' => 'bca', 'BcaC07g42519' => 'bca', 'BcaC07g42520' => 'bca', 'BcaC07g42523' => 'bca', 'BcaC07g42524' => 'bca', 'BcaC07g42525' => 'bca', 'BcaC08g47480' => 'bca', 'BcaC08g47481' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00530' => 'bna', 'BolC2t07178H' => 'bol', 'BolC3t16567H' => 'bol', 'BolC4t27234H' => 'bol', 'BolC5t29728H' => 'bol', 'BolC5t34622H' => 'bol', 'BolC6t40321H' => 'bol', 'BolC7t42028H' => 'bol', 'BolC8t49125H' => 'bol', 'BolC8t52538H' => 'bol', 'BolC8t52539H' => 'bol', 'BolC9t56681H' => 'bol', 'BolC9t58266H' => 'bol', 'BolSC21t60294H' => 'bol', 'BraA02t05670Z' => 'bra', 'BraA03t12716Z' => 'bra', 'BraA04t17685Z' => 'bra', 'BraA05t22788Z' => 'bra', 'BraA06t24032Z' => 'bra', 'BraA06t25625Z' => 'bra', 'BraA07t27930Z' => 'bra', 'BraA08t35242Z' => 'bra', 'BraA09t38609Z' => 'bra', 'BraA10t43905Z' => 'bra', 'C02p11060' => 'bna', 'C03p42990' => 'bna', 'C03p67310' => 'bna', 'C04p56990' => 'bna', 'C04p58660' => 'bna', 'C05p09890' => 'bna', 'C05p59680' => 'bna', 'C06p19830' => 'bna', 'C06p53040' => 'bna', 'C07p15230' => 'bna', 'C08p50070' => 'bna', 'C08p50090' => 'bna', 'C09p38330' => 'bna', 'C09p53940' => 'bna', 'CAN.G1014.1' => 'can', 'CAN.G644.30' => 'can', 'CAN.G84.47' => 'can', 'CAN.G919.8' => 'can', 'CANSAT54G0113' => 'cansat', 'CANSAT54G1286' => 'cansat', 'CANSAT64G1020' => 'cansat', 'CARHR008080' => 'chi', 'CARHR008090' => 'chi', 'CARHR012130' => 'chi', 'CARHR038390' => 'chi', 'CARHR082330' => 'chi', 'CARHR120520' => 'chi', 'CARHR151470' => 'chi', 'CARHR190950' => 'chi', 'Carub.0001s0760' => 'cru', 'Carub.0001s1146' => 'cru', 'Carub.0003s0721' => 'cru', 'Carub.0004s0858' => 'cru', 'Carub.0005s1040' => 'cru', 'Carub.0006s2035' => 'cru', 'Carub.0015s0005' => 'cru', 'Ca_01607_v3' => 'car', 'Ca_01677_v3' => 'car', 'Ca_06087_v3' => 'car', 'Ca_19238_v3' => 'car', 'Ca_19373_v3' => 'car', 'Ca_21079_v3' => 'car', 'CBR_g54016' => 'cbr', 'CBR_g54018' => 'cbr', 'CBR_g54020' => 'cbr', 'Cc01_g09780' => 'ccan', 'Cc01_g11680' => 'ccan', 'Cc02_g15610' => 'ccan', 'Cc05_g04350' => 'ccan', 'Cc09_g01580' => 'ccan', 'CDE01G0795' => 'cde', 'CDE02G2024' => 'cde', 'CDE02G2260' => 'cde', 'CDE02G4561' => 'cde', 'CDE05G2733' => 'cde', 'CDE05G3422' => 'cde', 'CDE06G2003' => 'cde', 'CDE08G0576' => 'cde', 'CDE09G0048' => 'cde', 'CDE11G0805' => 'cde', 'Cfa003644' => 'cfa', 'Cfa006290' => 'cfa', 'Cfa010080' => 'cfa', 'Cfa011376' => 'cfa', 'Cfa011576' => 'cfa', 'Cfa011577' => 'cfa', 'Cfa014389' => 'cfa', 'Ciclev10006044m.g' => 'ccl', 'Ciclev10006954m.g' => 'ccl', 'Ciclev10015131m.g' => 'ccl', 'Ciclev10015580m.g' => 'ccl', 'Ciclev10028359m.g' => 'ccl', 'Ciclev10028573m.g' => 'ccl', 'CiPaw.03G159300' => 'cil', 'CiPaw.04G115100' => 'cil', 'CiPaw.09G092800' => 'cil', 'CiPaw.10G071800' => 'cil', 'CiPaw.13G105800' => 'cil', 'CiPaw.13G141000' => 'cil', 'CiPaw.14G103400' => 'cil', 'ClCG01G012700' => 'cla', 'ClCG01G012720' => 'cla', 'ClCG01G021920' => 'cla', 'ClCG02G008870' => 'cla', 'ClCG02G020840' => 'cla', 'ClCG02G021930' => 'cla', 'COL.COLO4_19302' => 'col', 'COL.COLO4_25262' => 'col', 'COL.COLO4_31788' => 'col', 'Cpa.g.c34684' => 'cpa', 'Cpa.g.c36520.1' => 'cpa', 'Cpa.g.c45626' => 'cpa', 'Cpa.g.sc121.17' => 'cpa', 'Cpa.g.sc13.22' => 'cpa', 'Cpa.g.sc87.88' => 'cpa', 'Cre06.g261800' => 'cre', 'CsaV3_1G014500' => 'csa', 'CsaV3_1G014510' => 'csa', 'CsaV3_2G034880' => 'csa', 'CsaV3_6G014760' => 'csa', 'CsaV3_6G021500' => 'csa', 'CsaV3_6G048980' => 'csa', 'CSS0002511' => 'camsi', 'CSS0007556' => 'camsi', 'CSS0008532' => 'camsi', 'CSS0009709' => 'camsi', 'CSS0010486' => 'camsi', 'CSS0016768' => 'camsi', 'CSS0023512' => 'camsi', 'CSS0025341' => 'camsi', 'CSS0027999' => 'camsi', 'CSS0028944' => 'camsi', 'CSS0032292' => 'camsi', 'CSS0032464' => 'camsi', 'CSS0037153' => 'camsi', 'CSS0039256' => 'camsi', 'CSS0048392' => 'camsi', 'CSS0050458' => 'camsi', 'DCAR_004224' => 'dca', 'DCAR_006147' => 'dca', 'DCAR_006465' => 'dca', 'DCAR_008159' => 'dca', 'DCAR_012164' => 'dca', 'DCAR_019764' => 'dca', 'Dinv05418' => 'din', 'Dinv10839' => 'din', 'Dinv12521' => 'din', 'Dinv13900' => 'din', 'Dinv29426' => 'din', 'Duzib150G0263' => 'dzi', 'Duzib168G1178' => 'dzi', 'Duzib168G1924' => 'dzi', 'Duzib170G0299' => 'dzi', 'Duzib170G0813' => 'dzi', 'Duzib235G1128' => 'dzi', 'Duzib248G1060' => 'dzi', 'ECA232G1910' => 'eca', 'ECA233G4621' => 'eca', 'ECA238G1216' => 'eca', 'ECA238G1784' => 'eca', 'ECA248G1242' => 'eca', 'EL10Ac8g20071' => 'bvu', 'EL10Ac9g21086' => 'bvu', 'EL10Ac9g22407' => 'bvu', 'EL10Ac9g22412' => 'bvu', 'Eucgr.A01119' => 'egr', 'Eucgr.E04043' => 'egr', 'Eucgr.J00428' => 'egr', 'Eucgr.J00958' => 'egr', 'FAN11G3091' => 'fan', 'FAN11G3651' => 'fan', 'FAN16G2566' => 'fan', 'FAN21G3155' => 'fan', 'FAN21G3400' => 'fan', 'FAN21G3543' => 'fan', 'FAN25G0234' => 'fan', 'FAN25G1422' => 'fan', 'FAN25G3392' => 'fan', 'FvH4_3g01940' => 'fve', 'FvH4_3g29870' => 'fve', 'FvH4_3g33680' => 'fve', 'Glyma.09G004200' => 'gma', 'Glyma.11G151288' => 'gma', 'Glyma.11G189100' => 'gma', 'Glyma.12G072500' => 'gma', 'Glyma.12G085500' => 'gma', 'Glyma.12G181800' => 'gma', 'Glyma.12G193000' => 'gma', 'Glyma.13G309300' => 'gma', 'Glyma.13G319000' => 'gma', 'Glyma.17G012600' => 'gma', 'Gohir.A06G148600' => 'ghi', 'Gohir.A07G115800' => 'ghi', 'Gohir.A08G003600' => 'ghi', 'Gohir.A09G093300' => 'ghi', 'Gohir.A09G105400' => 'ghi', 'Gohir.A09G105500' => 'ghi', 'Gohir.D06G154600' => 'ghi', 'Gohir.D07G120200' => 'ghi', 'Gohir.D08G013900' => 'ghi', 'Gohir.D09G093100' => 'ghi', 'Gohir.D09G102200' => 'ghi', 'Gohir.D09G102300' => 'ghi', 'Gorai.001G129400' => 'gra', 'Gorai.004G008200' => 'gra', 'Gorai.006G109800' => 'gra', 'Gorai.006G119500' => 'gra', 'Gorai.006G121300' => 'gra', 'Gorai.010G180700' => 'gra', 'GSVIVG01012716001' => 'vvi', 'GSVIVG01025118001' => 'vvi', 'GSVIVG01030439001' => 'vvi', 'GSVIVG01031397001' => 'vvi', 'HanXRQChr01g0004201' => 'han', 'HanXRQChr02g0054941' => 'han', 'HanXRQChr05g0141811' => 'han', 'HanXRQChr07g0197751' => 'han', 'HanXRQChr11g0346691' => 'han', 'HanXRQChr13g0396971' => 'han', 'HanXRQChr14g0432951' => 'han', 'HanXRQChr14g0452001' => 'han', 'HanXRQChr15g0496681' => 'han', 'HanXRQChr17g0557491' => 'han', 'HanXRQChr17g0557501' => 'han', 'Haze_06809' => 'cav', 'Haze_12852' => 'cav', 'Haze_15850' => 'cav', 'Haze_23446' => 'cav', 'Haze_23942' => 'cav', 'Haze_23943' => 'cav', 'Hma1.2p1_0091F.1_g046450' => 'hma', 'Hma1.2p1_0128F.1_g059910' => 'hma', 'Hma1.2p1_0249F.1_g102260' => 'hma', 'Hma1.2p1_0453F.1_g156190' => 'hma', 'Hma1.2p1_0695F.1_g204380' => 'hma', 'Hma1.2p1_0749F.1_g212650' => 'hma', 'Hma1.2p1_2156F.1_g315420' => 'hma', 'Hma1.2p1_2686F.1_g326940' => 'hma', 'HPP92_006428' => 'vpl', 'HPP92_012069' => 'vpl', 'HPP92_014129' => 'vpl', 'HPP92_014133' => 'vpl', 'HPP92_017315' => 'vpl', 'HPP92_026445' => 'vpl', 'HPP92_026446' => 'vpl', 'Hund00774' => 'sun', 'Hund07682' => 'sun', 'Hund21413' => 'sun', 'Hund23462' => 'sun', 'Hund23463' => 'sun', 'Lalb_Chr03g0027911' => 'lal', 'Lalb_Chr13g0304271' => 'lal', 'Lalb_Chr19g0137471' => 'lal', 'Lalb_Chr22g0350651' => 'lal', 'Lalb_Chr24g0395151' => 'lal', 'Lj1A1231T40' => 'lonja', 'Lj1A221T48' => 'lonja', 'Lj1C924T12' => 'lonja', 'Lj2C993G6' => 'lonja', 'Lj3g0005790' => 'lja', 'Lj3g0015432' => 'lja', 'Lj3g0017722' => 'lja', 'Lj3g0018497' => 'lja', 'Lj4g0025071' => 'lja', 'Lsat_1_v5_gn_1_129680' => 'lsa', 'Lsat_1_v5_gn_2_25321' => 'lsa', 'Lsat_1_v5_gn_2_95461' => 'lsa', 'Lsat_1_v5_gn_4_159620' => 'lsa', 'Lsat_1_v5_gn_6_41301' => 'lsa', 'Lsat_1_v5_gn_6_74660' => 'lsa', 'Lsat_1_v5_gn_7_11520' => 'lsa', 'Lsat_1_v5_gn_9_67680' => 'lsa', 'Manes.04G008300' => 'mes', 'Manes.04G008400' => 'mes', 'Manes.04G026500' => 'mes', 'Manes.10G135300' => 'mes', 'Manes.11G157300' => 'mes', 'Manes.12G074000' => 'mes', 'Manes.16G006200' => 'mes', 'Manes.17G026400' => 'mes', 'Mapoly0024s0086' => 'mpo', 'Mapoly0024s0087' => 'mpo', 'Mapoly0071s0057' => 'mpo', 'Mapoly0204s0012' => 'mpo', 'MBI04_g37681_MAGBIO' => 'mbi', 'MBI05_g17779_MAGBIO' => 'mbi', 'MBI12_g31184_MAGBIO' => 'mbi', 'MBI17_g11083_MAGBIO' => 'mbi', 'MBI18_g03883_MAGBIO' => 'mbi', 'MBI18_g28940_MAGBIO' => 'mbi', 'MCO01G690' => 'mco', 'MD03G1109900' => 'mdo', 'MD03G1134800' => 'mdo', 'MD05G1348000' => 'mdo', 'MD10G1322400' => 'mdo', 'MD11G1123300' => 'mdo', 'MD11G1157600' => 'mdo', 'Medtr2g084875' => 'mtr', 'Medtr2g088130' => 'mtr', 'Medtr4g055310' => 'mtr', 'Medtr4g061070' => 'mtr', 'Medtr4g132250' => 'mtr', 'MELO3C004795.2' => 'cme', 'MELO3C004797.2' => 'cme', 'MELO3C007396.2' => 'cme', 'MELO3C019277.2' => 'cme', 'MELO3C021449.2' => 'cme', 'MELO3C025736.2' => 'cme', 'Migut.D02175' => 'egut', 'Migut.H01573' => 'egut', 'Migut.M01327' => 'egut', 'Migut.N02513' => 'egut', 'MSTRG.14638' => 'ama', 'MSTRG.18632' => 'ama', 'MSTRG.7203' => 'ama', 'Nitab4.5_0000533g0140' => 'nta', 'Nitab4.5_0000888g0150' => 'nta', 'Nitab4.5_0001453g0040' => 'nta', 'Nitab4.5_0002827g0090' => 'nta', 'Nitab4.5_0003082g0040' => 'nta', 'Nitab4.5_0007799g0040' => 'nta', 'Nitab4.5_0008983g0010' => 'nta', 'Nitab4.5_0009017g0020' => 'nta', 'Nn1g02132' => 'nnu', 'Nn1g03492' => 'nnu', 'Nn1g03493' => 'nnu', 'Nn1g03494' => 'nnu', 'Nn1g07164' => 'nnu', 'Nn1g07291' => 'nnu', 'Nn2g10655' => 'nnu', 'Nn2g11652' => 'nnu', 'Nn2g14008' => 'nnu', 'Nn3g17476' => 'nnu', 'Nn3g17477' => 'nnu', 'Nn4g22370' => 'nnu', 'Nn4g25255' => 'nnu', 'Nn5g27755' => 'nnu', 'Nn6g34260' => 'nnu', 'Nn6g35041' => 'nnu', 'Oeu005924.1' => 'oeu', 'Oeu008383.1' => 'oeu', 'Oeu014928.1' => 'oeu', 'Oeu019889.1' => 'oeu', 'Oeu022271.1' => 'oeu', 'Oeu025271.1' => 'oeu', 'Oeu036302.1' => 'oeu', 'Oeu044100.1' => 'oeu', 'Os01g0528300' => 'osa', 'Os03g0286200' => 'osa', 'Os04g0406600' => 'osa', 'Os07g0512000' => 'osa', 'Os07g0694600' => 'osa', 'Os08g0411000' => 'osa', 'Os09g0565700' => 'osa', 'Os09g0566050' => 'osa', 'Os10g0523700' => 'osa', 'Peaxi162Scf00002g00514' => 'pax', 'Peaxi162Scf00047g01817' => 'pax', 'Peaxi162Scf00114g00001' => 'pax', 'Peaxi162Scf00147g00613' => 'pax', 'Peaxi162Scf00389g00425' => 'pax', 'PGR042G1139' => 'pgr', 'PGR042G3273' => 'pgr', 'PGR102G2180' => 'pgr', 'PGR119G0234' => 'pgr', 'PGR119G0668' => 'pgr', 'PGSC0003DMG400007122' => 'stu', 'PGSC0003DMG400016478' => 'stu', 'PGSC0003DMG400025374' => 'stu', 'PGSC0003DMG400026536' => 'stu', 'Phvul.003G079600' => 'pvu', 'Phvul.005G115600' => 'pvu', 'Phvul.005G127100' => 'pvu', 'Phvul.006G149500' => 'pvu', 'Phvul.006G149600' => 'pvu', 'Phvul.011G071800' => 'pvu', 'Phvul.011G090400' => 'pvu', 'Potri.004G013400' => 'ptr', 'Potri.004G188100' => 'ptr', 'Potri.008G195500' => 'ptr', 'Potri.009G148800' => 'ptr', 'Potri.011G004700' => 'ptr', 'Pp3c17_22810' => 'ppa', 'Pp3c18_4480' => 'ppa', 'Pp3c19_13030' => 'ppa', 'Pp3c1_33620' => 'ppa', 'Pp3c2_9380' => 'ppa', 'PRCOL_00001023' => 'pco', 'Prupe.3G216300' => 'ppe', 'Prupe.4G019500' => 'ppe', 'Prupe.6G092500' => 'ppe', 'Prupe.6G119200' => 'ppe', 'Psat0s1945g0080' => 'psa', 'Psat0s4167g0040' => 'psa', 'Psat1g185800' => 'psa', 'Psat4g006440' => 'psa', 'Psat4g006480' => 'psa', 'Psat4g168120' => 'psa', 'Psat5g255680' => 'psa', 'Psat5g261760' => 'psa', 'Psat7g222120' => 'psa', 'PSO063G7252' => 'pso', 'PSO170G4778' => 'pso', 'PSO210G2249' => 'pso', 'PSO339G2411' => 'pso', 'PSO339G2457' => 'pso', 'PSO339G2854' => 'pso', 'PSO339G4288' => 'pso', 'PSO339G4615' => 'pso', 'PSO384G2796' => 'pso', 'PSO384G2940' => 'pso', 'PSO384G4227' => 'pso', 'PSO478G1425' => 'pso', 'PSO541G3863' => 'pso', 'PSO675G0507' => 'pso', 'PSO782G0338' => 'pso', 'PSO832G0644' => 'pso', 'QL01p013664' => 'qlo', 'QL01p036598' => 'qlo', 'QL05p072984' => 'qlo', 'QL08p005768' => 'qlo', 'QL08p032743' => 'qlo', 'QL93p0073_0439' => 'qlo', 'QL93p0073_0444' => 'qlo', 'RcHm_v2.0_Chr5g0002851' => 'rch', 'RcHm_v2.0_Chr5g0055201' => 'rch', 'RcHm_v2.0_Chr5g0061191' => 'rch', 'RcHm_v2.0_Chr7g0203231' => 'rch', 'Rhsim01G0208100' => 'rsi', 'Rhsim01G0208200' => 'rsi', 'Rhsim02G0106500' => 'rsi', 'Rhsim03G0107900' => 'rsi', 'Rhsim06G0163400' => 'rsi', 'Rhsim13G0105200' => 'rsi', 'Sabra04G0006300' => 'sbr', 'Sabra04G0127000' => 'sbr', 'Sabra08G0148700' => 'sbr', 'Sabra09G0117400' => 'sbr', 'SalBow1G3326' => 'sbo', 'SalBow3G3228' => 'sbo', 'SalBow6G1634' => 'sbo', 'SalBow6G3603' => 'sbo', 'SalBow6G5266' => 'sbo', 'SalBow7G2265' => 'sbo', 'SalBow8G0850' => 'sbo', 'SalBow8G2592' => 'sbo', 'Sc05g0009240' => 'sci', 'Sc12g0002300' => 'sci', 'Sc21g0000100' => 'sci', 'Sc21g0004720' => 'sci', 'Sed0002949' => 'sed', 'Sed0004114' => 'sed', 'Sed0004306' => 'sed', 'Sed0006172' => 'sed', 'Sed0008413' => 'sed', 'Sed0013809' => 'sed', 'Sed0019556' => 'sed', 'SEGI_03570' => 'sgi', 'SEGI_07859' => 'sgi', 'SEGI_15042' => 'sgi', 'SEGI_16263' => 'sgi', 'SEGI_16552' => 'sgi', 'SEGI_24331' => 'sgi', 'SEGI_27316' => 'sgi', 'SEGI_29521' => 'sgi', 'SEGI_41342' => 'sgi', 'SGA_v2.0_scaffold27G11617' => 'sas', 'SGA_v2.0_scaffold316G48428' => 'sas', 'SGA_v2.0_scaffold49G18261' => 'sas', 'SGA_v2.0_scaffold7G03831' => 'sas', 'SGA_v2.0_scaffold93G28359' => 'sas', 'SHI02210' => 'shi', 'SHI06028' => 'shi', 'SHI06321' => 'shi', 'SMO111G0012' => 'smo', 'SMO228G0080' => 'smo', 'SMO356G0756' => 'smo', 'Solyc02g080620.3' => 'sly', 'Solyc06g074530.1' => 'sly', 'Solyc11g066890.1' => 'sly', 'Solyc11g072520.3' => 'sly', 'Sopen02g025330' => 'spe', 'Sopen06g031000' => 'spe', 'Sopen09g008240' => 'spe', 'Sopen09g025210' => 'spe', 'Sopen11g026600' => 'spe', 'Sopen11g030170' => 'spe', 'Sp1g10420' => 'spa', 'Sp3g06570' => 'spa', 'Sp4g10660' => 'spa', 'Sp5g16460' => 'spa', 'Sp6g22710' => 'spa', 'TAR365G0112' => 'tar', 'TAR369G0717' => 'tar', 'TAR374G0976' => 'tar', 'TAR623G1128' => 'tar', 'TAR626G1937' => 'tar', 'TAR627G0123' => 'tar', 'TAR628G0305' => 'tar', 'TAR636G1176' => 'tar', 'TAR636G2442' => 'tar', 'THA.LOC104800556' => 'tha', 'THA.LOC104809501' => 'tha', 'THA.LOC104815126' => 'tha', 'THA.LOC104815732' => 'tha', 'THA.LOC104823528' => 'tha', 'Thecc.02G365600' => 'tca', 'Thecc.06G222300' => 'tca', 'Thecc.09G261800' => 'tca', 'Thecc.09G291400' => 'tca', 'Thhalv10003028m.g' => 'esa', 'Thhalv10007886m.g' => 'esa', 'Thhalv10016085m.g' => 'esa', 'Thhalv10016681m.g' => 'esa', 'Thhalv10020951m.g' => 'esa', 'TPR.G15598' => 'tpr', 'TPR.G29305' => 'tpr', 'TPR.G32395' => 'tpr', 'TPR.G36998' => 'tpr', 'TPR.G4227' => 'tpr', 'TWI18G1433' => 'twi', 'TWI31G0755' => 'twi', 'TWI38G0912' => 'twi', 'TWI75G1097' => 'twi', 'TWI75G1619' => 'twi', 'TWI79G1336' => 'twi', 'unitig_0.g943' => 'ugi', 'unitig_0.g944' => 'ugi', 'unitig_22.g6646' => 'ugi', 'unitig_37.g12681' => 'ugi', 'unitig_8.g3290' => 'ugi', 'vmacro03278' => 'vma', 'vmacro12197' => 'vma', 'vmacro14478' => 'vma', 'vmacro15787' => 'vma', 'vmacro15789' => 'vma', 'vmacro15790' => 'vma', 'vmacro15806' => 'vma', 'vmacro22907' => 'vma', 'vmacro22908' => 'vma', 'vmacro22909' => 'vma', 'vmacro23108' => 'vma', 'VMungo0540G0540' => 'vmu', 'VMungo0540G2468' => 'vmu', 'VMungo1080G0390' => 'vmu', 'VMungo1080G1165' => 'vmu', 'VMungo1127G0170' => 'vmu', 'VMungo1127G2099' => 'vmu', 'VMungo1215G3013' => 'vmu', 'Zm00001eb013110' => 'zma', 'Zm00001eb084260' => 'zma', 'Zm00001eb096110' => 'zma', 'Zm00001eb217510' => 'zma', 'Zm00001eb322550' => 'zma', 'Zm00001eb390770' => 'zma', 'Zm00001eb397170' => 'zma', 'Zm00001eb404610' => 'zma', 'Zm00001eb421790' => 'zma' ), 'gf_id' => 'HOM05D000911', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000911' ), 'data_identifier' => 'HOM05D000911', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000911', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27780' => 'bna', 'A03p35380' => 'bna', 'A04p21160' => 'bna', 'A05p40570' => 'bna', 'A06p26900' => 'bna', 'A08p33230' => 'bna', 'A09p65960' => 'bna', 'A10p18290' => 'bna', 'Aa31LG1G12990' => 'aar', 'Aa31LG1G2980' => 'aar', 'Aa31LG4G14320' => 'aar', 'Aa31LG7G11800' => 'aar', 'Aa31sc36G50' => 'aar', 'Aa31sc36G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3721' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5459' => 'aag', 'Actinidia03028' => 'ach', 'Actinidia03753' => 'ach', 'Actinidia04187' => 'ach', 'Actinidia05509' => 'ach', 'Actinidia24180' => 'ach', 'Actinidia26906' => 'ach', 'Actinidia37097' => 'ach', 'Actinidia38249' => 'ach', 'Ah.01g003470' => 'amhyb', 'Ah.01g004580' => 'amhyb', 'Ah.01g014850' => 'amhyb', 'Ah.01g016830' => 'amhyb', 'Ah.14g088000' => 'amhyb', 'AL1G22980' => 'aly', 'AL3G18990' => 'aly', 'AL4G22440' => 'aly', 'AL4G33180' => 'aly', 'AL5G22920' => 'aly', 'AL6G33660' => 'aly', 'AL8G20720' => 'aly', 'Aqoxy1G00935' => 'aox', 'Aqoxy1G02094' => 'aox', 'Aqoxy2G01239' => 'aox', 'Aqoxy4G01870' => 'aox', 'Aqoxy7G00450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.36ZVTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71EM27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5D6C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH3WRE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3NCM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RIM768' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YB5YRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z36GDV' => 'arhy', 'AT1G08250' => 'ath', 'AT1G11790' => 'ath', 'AT2G27820' => 'ath', 'AT3G07630' => 'ath', 'AT3G44720' => 'ath', 'AT5G22630' => 'ath', 'ATR0693G304' => 'atr', 'ATR0794G109' => 'atr', 'ATR0820G120' => 'atr', 'ATR1159G064' => 'atr', 'Atru.chr10.2239' => 'acertr', 'Atru.chr3.3371' => 'acertr', 'Atru.chr6.3202' => 'acertr', 'AUR62006499' => 'cqu', 'AUR62012718' => 'cqu', 'AUR62021938' => 'cqu', 'AUR62023932' => 'cqu', 'AUR62025034' => 'cqu', 'AUR62025035' => 'cqu', 'AUR62038307' => 'cqu', 'AUR62043466' => 'cqu', 'BcaB02g10748' => 'bca', 'BcaB03g13231' => 'bca', 'BcaB03g14689' => 'bca', 'BcaB05g22716' => 'bca', 'BcaB06g28172' => 'bca', 'BcaB08g36413' => 'bca', 'BcaC01g02186' => 'bca', 'BcaC01g04272' => 'bca', 'BcaC02g08080' => 'bca', 'BcaC02g08227' => 'bca', 'BcaC03g13901' => 'bca', 'BcaC04g19593' => 'bca', 'BcaC04g20874' => 'bca', 'BcaC05g29557' => 'bca', 'BcaC06g35505' => 'bca', 'BcaC07g41954' => 'bca', 'BcaC07g41955' => 'bca', 'BcaC07g41956' => 'bca', 'BcaC07g42519' => 'bca', 'BcaC07g42520' => 'bca', 'BcaC07g42523' => 'bca', 'BcaC07g42524' => 'bca', 'BcaC07g42525' => 'bca', 'BcaC08g47480' => 'bca', 'BcaC08g47481' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00530' => 'bna', 'BolC2t07178H' => 'bol', 'BolC3t16567H' => 'bol', 'BolC4t27234H' => 'bol', 'BolC5t29728H' => 'bol', 'BolC5t34622H' => 'bol', 'BolC6t40321H' => 'bol', 'BolC7t42028H' => 'bol', 'BolC8t49125H' => 'bol', 'BolC8t52538H' => 'bol', 'BolC8t52539H' => 'bol', 'BolC9t56681H' => 'bol', 'BolC9t58266H' => 'bol', 'BolSC21t60294H' => 'bol', 'BraA02t05670Z' => 'bra', 'BraA03t12716Z' => 'bra', 'BraA04t17685Z' => 'bra', 'BraA05t22788Z' => 'bra', 'BraA06t24032Z' => 'bra', 'BraA06t25625Z' => 'bra', 'BraA07t27930Z' => 'bra', 'BraA08t35242Z' => 'bra', 'BraA09t38609Z' => 'bra', 'BraA10t43905Z' => 'bra', 'C02p11060' => 'bna', 'C03p42990' => 'bna', 'C03p67310' => 'bna', 'C04p56990' => 'bna', 'C04p58660' => 'bna', 'C05p09890' => 'bna', 'C05p59680' => 'bna', 'C06p19830' => 'bna', 'C06p53040' => 'bna', 'C07p15230' => 'bna', 'C08p50070' => 'bna', 'C08p50090' => 'bna', 'C09p38330' => 'bna', 'C09p53940' => 'bna', 'CAN.G1014.1' => 'can', 'CAN.G644.30' => 'can', 'CAN.G84.47' => 'can', 'CAN.G919.8' => 'can', 'CANSAT54G0113' => 'cansat', 'CANSAT54G1286' => 'cansat', 'CANSAT64G1020' => 'cansat', 'CARHR008080' => 'chi', 'CARHR008090' => 'chi', 'CARHR012130' => 'chi', 'CARHR038390' => 'chi', 'CARHR082330' => 'chi', 'CARHR120520' => 'chi', 'CARHR151470' => 'chi', 'CARHR190950' => 'chi', 'Carub.0001s0760' => 'cru', 'Carub.0001s1146' => 'cru', 'Carub.0003s0721' => 'cru', 'Carub.0004s0858' => 'cru', 'Carub.0005s1040' => 'cru', 'Carub.0006s2035' => 'cru', 'Carub.0015s0005' => 'cru', 'Ca_01607_v3' => 'car', 'Ca_01677_v3' => 'car', 'Ca_06087_v3' => 'car', 'Ca_19238_v3' => 'car', 'Ca_19373_v3' => 'car', 'Ca_21079_v3' => 'car', 'CBR_g54016' => 'cbr', 'CBR_g54018' => 'cbr', 'CBR_g54020' => 'cbr', 'Cc01_g09780' => 'ccan', 'Cc01_g11680' => 'ccan', 'Cc02_g15610' => 'ccan', 'Cc05_g04350' => 'ccan', 'Cc09_g01580' => 'ccan', 'CDE01G0795' => 'cde', 'CDE02G2024' => 'cde', 'CDE02G2260' => 'cde', 'CDE02G4561' => 'cde', 'CDE05G2733' => 'cde', 'CDE05G3422' => 'cde', 'CDE06G2003' => 'cde', 'CDE08G0576' => 'cde', 'CDE09G0048' => 'cde', 'CDE11G0805' => 'cde', 'Cfa003644' => 'cfa', 'Cfa006290' => 'cfa', 'Cfa010080' => 'cfa', 'Cfa011376' => 'cfa', 'Cfa011576' => 'cfa', 'Cfa011577' => 'cfa', 'Cfa014389' => 'cfa', 'Ciclev10006044m.g' => 'ccl', 'Ciclev10006954m.g' => 'ccl', 'Ciclev10015131m.g' => 'ccl', 'Ciclev10015580m.g' => 'ccl', 'Ciclev10028359m.g' => 'ccl', 'Ciclev10028573m.g' => 'ccl', 'CiPaw.03G159300' => 'cil', 'CiPaw.04G115100' => 'cil', 'CiPaw.09G092800' => 'cil', 'CiPaw.10G071800' => 'cil', 'CiPaw.13G105800' => 'cil', 'CiPaw.13G141000' => 'cil', 'CiPaw.14G103400' => 'cil', 'ClCG01G012700' => 'cla', 'ClCG01G012720' => 'cla', 'ClCG01G021920' => 'cla', 'ClCG02G008870' => 'cla', 'ClCG02G020840' => 'cla', 'ClCG02G021930' => 'cla', 'COL.COLO4_19302' => 'col', 'COL.COLO4_25262' => 'col', 'COL.COLO4_31788' => 'col', 'Cpa.g.c34684' => 'cpa', 'Cpa.g.c36520.1' => 'cpa', 'Cpa.g.c45626' => 'cpa', 'Cpa.g.sc121.17' => 'cpa', 'Cpa.g.sc13.22' => 'cpa', 'Cpa.g.sc87.88' => 'cpa', 'Cre06.g261800' => 'cre', 'CsaV3_1G014500' => 'csa', 'CsaV3_1G014510' => 'csa', 'CsaV3_2G034880' => 'csa', 'CsaV3_6G014760' => 'csa', 'CsaV3_6G021500' => 'csa', 'CsaV3_6G048980' => 'csa', 'CSS0002511' => 'camsi', 'CSS0007556' => 'camsi', 'CSS0008532' => 'camsi', 'CSS0009709' => 'camsi', 'CSS0010486' => 'camsi', 'CSS0016768' => 'camsi', 'CSS0023512' => 'camsi', 'CSS0025341' => 'camsi', 'CSS0027999' => 'camsi', 'CSS0028944' => 'camsi', 'CSS0032292' => 'camsi', 'CSS0032464' => 'camsi', 'CSS0037153' => 'camsi', 'CSS0039256' => 'camsi', 'CSS0048392' => 'camsi', 'CSS0050458' => 'camsi', 'DCAR_004224' => 'dca', 'DCAR_006147' => 'dca', 'DCAR_006465' => 'dca', 'DCAR_008159' => 'dca', 'DCAR_012164' => 'dca', 'DCAR_019764' => 'dca', 'Dinv05418' => 'din', 'Dinv10839' => 'din', 'Dinv12521' => 'din', 'Dinv13900' => 'din', 'Dinv29426' => 'din', 'Duzib150G0263' => 'dzi', 'Duzib168G1178' => 'dzi', 'Duzib168G1924' => 'dzi', 'Duzib170G0299' => 'dzi', 'Duzib170G0813' => 'dzi', 'Duzib235G1128' => 'dzi', 'Duzib248G1060' => 'dzi', 'ECA232G1910' => 'eca', 'ECA233G4621' => 'eca', 'ECA238G1216' => 'eca', 'ECA238G1784' => 'eca', 'ECA248G1242' => 'eca', 'EL10Ac8g20071' => 'bvu', 'EL10Ac9g21086' => 'bvu', 'EL10Ac9g22407' => 'bvu', 'EL10Ac9g22412' => 'bvu', 'Eucgr.A01119' => 'egr', 'Eucgr.E04043' => 'egr', 'Eucgr.J00428' => 'egr', 'Eucgr.J00958' => 'egr', 'FAN11G3091' => 'fan', 'FAN11G3651' => 'fan', 'FAN16G2566' => 'fan', 'FAN21G3155' => 'fan', 'FAN21G3400' => 'fan', 'FAN21G3543' => 'fan', 'FAN25G0234' => 'fan', 'FAN25G1422' => 'fan', 'FAN25G3392' => 'fan', 'FvH4_3g01940' => 'fve', 'FvH4_3g29870' => 'fve', 'FvH4_3g33680' => 'fve', 'Glyma.09G004200' => 'gma', 'Glyma.11G151288' => 'gma', 'Glyma.11G189100' => 'gma', 'Glyma.12G072500' => 'gma', 'Glyma.12G085500' => 'gma', 'Glyma.12G181800' => 'gma', 'Glyma.12G193000' => 'gma', 'Glyma.13G309300' => 'gma', 'Glyma.13G319000' => 'gma', 'Glyma.17G012600' => 'gma', 'Gohir.A06G148600' => 'ghi', 'Gohir.A07G115800' => 'ghi', 'Gohir.A08G003600' => 'ghi', 'Gohir.A09G093300' => 'ghi', 'Gohir.A09G105400' => 'ghi', 'Gohir.A09G105500' => 'ghi', 'Gohir.D06G154600' => 'ghi', 'Gohir.D07G120200' => 'ghi', 'Gohir.D08G013900' => 'ghi', 'Gohir.D09G093100' => 'ghi', 'Gohir.D09G102200' => 'ghi', 'Gohir.D09G102300' => 'ghi', 'Gorai.001G129400' => 'gra', 'Gorai.004G008200' => 'gra', 'Gorai.006G109800' => 'gra', 'Gorai.006G119500' => 'gra', 'Gorai.006G121300' => 'gra', 'Gorai.010G180700' => 'gra', 'GSVIVG01012716001' => 'vvi', 'GSVIVG01025118001' => 'vvi', 'GSVIVG01030439001' => 'vvi', 'GSVIVG01031397001' => 'vvi', 'HanXRQChr01g0004201' => 'han', 'HanXRQChr02g0054941' => 'han', 'HanXRQChr05g0141811' => 'han', 'HanXRQChr07g0197751' => 'han', 'HanXRQChr11g0346691' => 'han', 'HanXRQChr13g0396971' => 'han', 'HanXRQChr14g0432951' => 'han', 'HanXRQChr14g0452001' => 'han', 'HanXRQChr15g0496681' => 'han', 'HanXRQChr17g0557491' => 'han', 'HanXRQChr17g0557501' => 'han', 'Haze_06809' => 'cav', 'Haze_12852' => 'cav', 'Haze_15850' => 'cav', 'Haze_23446' => 'cav', 'Haze_23942' => 'cav', 'Haze_23943' => 'cav', 'Hma1.2p1_0091F.1_g046450' => 'hma', 'Hma1.2p1_0128F.1_g059910' => 'hma', 'Hma1.2p1_0249F.1_g102260' => 'hma', 'Hma1.2p1_0453F.1_g156190' => 'hma', 'Hma1.2p1_0695F.1_g204380' => 'hma', 'Hma1.2p1_0749F.1_g212650' => 'hma', 'Hma1.2p1_2156F.1_g315420' => 'hma', 'Hma1.2p1_2686F.1_g326940' => 'hma', 'HPP92_006428' => 'vpl', 'HPP92_012069' => 'vpl', 'HPP92_014129' => 'vpl', 'HPP92_014133' => 'vpl', 'HPP92_017315' => 'vpl', 'HPP92_026445' => 'vpl', 'HPP92_026446' => 'vpl', 'Hund00774' => 'sun', 'Hund07682' => 'sun', 'Hund21413' => 'sun', 'Hund23462' => 'sun', 'Hund23463' => 'sun', 'Lalb_Chr03g0027911' => 'lal', 'Lalb_Chr13g0304271' => 'lal', 'Lalb_Chr19g0137471' => 'lal', 'Lalb_Chr22g0350651' => 'lal', 'Lalb_Chr24g0395151' => 'lal', 'Lj1A1231T40' => 'lonja', 'Lj1A221T48' => 'lonja', 'Lj1C924T12' => 'lonja', 'Lj2C993G6' => 'lonja', 'Lj3g0005790' => 'lja', 'Lj3g0015432' => 'lja', 'Lj3g0017722' => 'lja', 'Lj3g0018497' => 'lja', 'Lj4g0025071' => 'lja', 'Lsat_1_v5_gn_1_129680' => 'lsa', 'Lsat_1_v5_gn_2_25321' => 'lsa', 'Lsat_1_v5_gn_2_95461' => 'lsa', 'Lsat_1_v5_gn_4_159620' => 'lsa', 'Lsat_1_v5_gn_6_41301' => 'lsa', 'Lsat_1_v5_gn_6_74660' => 'lsa', 'Lsat_1_v5_gn_7_11520' => 'lsa', 'Lsat_1_v5_gn_9_67680' => 'lsa', 'Manes.04G008300' => 'mes', 'Manes.04G008400' => 'mes', 'Manes.04G026500' => 'mes', 'Manes.10G135300' => 'mes', 'Manes.11G157300' => 'mes', 'Manes.12G074000' => 'mes', 'Manes.16G006200' => 'mes', 'Manes.17G026400' => 'mes', 'Mapoly0024s0086' => 'mpo', 'Mapoly0024s0087' => 'mpo', 'Mapoly0071s0057' => 'mpo', 'Mapoly0204s0012' => 'mpo', 'MBI04_g37681_MAGBIO' => 'mbi', 'MBI05_g17779_MAGBIO' => 'mbi', 'MBI12_g31184_MAGBIO' => 'mbi', 'MBI17_g11083_MAGBIO' => 'mbi', 'MBI18_g03883_MAGBIO' => 'mbi', 'MBI18_g28940_MAGBIO' => 'mbi', 'MCO01G690' => 'mco', 'MD03G1109900' => 'mdo', 'MD03G1134800' => 'mdo', 'MD05G1348000' => 'mdo', 'MD10G1322400' => 'mdo', 'MD11G1123300' => 'mdo', 'MD11G1157600' => 'mdo', 'Medtr2g084875' => 'mtr', 'Medtr2g088130' => 'mtr', 'Medtr4g055310' => 'mtr', 'Medtr4g061070' => 'mtr', 'Medtr4g132250' => 'mtr', 'MELO3C004795.2' => 'cme', 'MELO3C004797.2' => 'cme', 'MELO3C007396.2' => 'cme', 'MELO3C019277.2' => 'cme', 'MELO3C021449.2' => 'cme', 'MELO3C025736.2' => 'cme', 'Migut.D02175' => 'egut', 'Migut.H01573' => 'egut', 'Migut.M01327' => 'egut', 'Migut.N02513' => 'egut', 'MSTRG.14638' => 'ama', 'MSTRG.18632' => 'ama', 'MSTRG.7203' => 'ama', 'Nitab4.5_0000533g0140' => 'nta', 'Nitab4.5_0000888g0150' => 'nta', 'Nitab4.5_0001453g0040' => 'nta', 'Nitab4.5_0002827g0090' => 'nta', 'Nitab4.5_0003082g0040' => 'nta', 'Nitab4.5_0007799g0040' => 'nta', 'Nitab4.5_0008983g0010' => 'nta', 'Nitab4.5_0009017g0020' => 'nta', 'Nn1g02132' => 'nnu', 'Nn1g03492' => 'nnu', 'Nn1g03493' => 'nnu', 'Nn1g03494' => 'nnu', 'Nn1g07164' => 'nnu', 'Nn1g07291' => 'nnu', 'Nn2g10655' => 'nnu', 'Nn2g11652' => 'nnu', 'Nn2g14008' => 'nnu', 'Nn3g17476' => 'nnu', 'Nn3g17477' => 'nnu', 'Nn4g22370' => 'nnu', 'Nn4g25255' => 'nnu', 'Nn5g27755' => 'nnu', 'Nn6g34260' => 'nnu', 'Nn6g35041' => 'nnu', 'Oeu005924.1' => 'oeu', 'Oeu008383.1' => 'oeu', 'Oeu014928.1' => 'oeu', 'Oeu019889.1' => 'oeu', 'Oeu022271.1' => 'oeu', 'Oeu025271.1' => 'oeu', 'Oeu036302.1' => 'oeu', 'Oeu044100.1' => 'oeu', 'Os01g0528300' => 'osa', 'Os03g0286200' => 'osa', 'Os04g0406600' => 'osa', 'Os07g0512000' => 'osa', 'Os07g0694600' => 'osa', 'Os08g0411000' => 'osa', 'Os09g0565700' => 'osa', 'Os09g0566050' => 'osa', 'Os10g0523700' => 'osa', 'Peaxi162Scf00002g00514' => 'pax', 'Peaxi162Scf00047g01817' => 'pax', 'Peaxi162Scf00114g00001' => 'pax', 'Peaxi162Scf00147g00613' => 'pax', 'Peaxi162Scf00389g00425' => 'pax', 'PGR042G1139' => 'pgr', 'PGR042G3273' => 'pgr', 'PGR102G2180' => 'pgr', 'PGR119G0234' => 'pgr', 'PGR119G0668' => 'pgr', 'PGSC0003DMG400007122' => 'stu', 'PGSC0003DMG400016478' => 'stu', 'PGSC0003DMG400025374' => 'stu', 'PGSC0003DMG400026536' => 'stu', 'Phvul.003G079600' => 'pvu', 'Phvul.005G115600' => 'pvu', 'Phvul.005G127100' => 'pvu', 'Phvul.006G149500' => 'pvu', 'Phvul.006G149600' => 'pvu', 'Phvul.011G071800' => 'pvu', 'Phvul.011G090400' => 'pvu', 'Potri.004G013400' => 'ptr', 'Potri.004G188100' => 'ptr', 'Potri.008G195500' => 'ptr', 'Potri.009G148800' => 'ptr', 'Potri.011G004700' => 'ptr', 'Pp3c17_22810' => 'ppa', 'Pp3c18_4480' => 'ppa', 'Pp3c19_13030' => 'ppa', 'Pp3c1_33620' => 'ppa', 'Pp3c2_9380' => 'ppa', 'PRCOL_00001023' => 'pco', 'Prupe.3G216300' => 'ppe', 'Prupe.4G019500' => 'ppe', 'Prupe.6G092500' => 'ppe', 'Prupe.6G119200' => 'ppe', 'Psat0s1945g0080' => 'psa', 'Psat0s4167g0040' => 'psa', 'Psat1g185800' => 'psa', 'Psat4g006440' => 'psa', 'Psat4g006480' => 'psa', 'Psat4g168120' => 'psa', 'Psat5g255680' => 'psa', 'Psat5g261760' => 'psa', 'Psat7g222120' => 'psa', 'PSO063G7252' => 'pso', 'PSO170G4778' => 'pso', 'PSO210G2249' => 'pso', 'PSO339G2411' => 'pso', 'PSO339G2457' => 'pso', 'PSO339G2854' => 'pso', 'PSO339G4288' => 'pso', 'PSO339G4615' => 'pso', 'PSO384G2796' => 'pso', 'PSO384G2940' => 'pso', 'PSO384G4227' => 'pso', 'PSO478G1425' => 'pso', 'PSO541G3863' => 'pso', 'PSO675G0507' => 'pso', 'PSO782G0338' => 'pso', 'PSO832G0644' => 'pso', 'QL01p013664' => 'qlo', 'QL01p036598' => 'qlo', 'QL05p072984' => 'qlo', 'QL08p005768' => 'qlo', 'QL08p032743' => 'qlo', 'QL93p0073_0439' => 'qlo', 'QL93p0073_0444' => 'qlo', 'RcHm_v2.0_Chr5g0002851' => 'rch', 'RcHm_v2.0_Chr5g0055201' => 'rch', 'RcHm_v2.0_Chr5g0061191' => 'rch', 'RcHm_v2.0_Chr7g0203231' => 'rch', 'Rhsim01G0208100' => 'rsi', 'Rhsim01G0208200' => 'rsi', 'Rhsim02G0106500' => 'rsi', 'Rhsim03G0107900' => 'rsi', 'Rhsim06G0163400' => 'rsi', 'Rhsim13G0105200' => 'rsi', 'Sabra04G0006300' => 'sbr', 'Sabra04G0127000' => 'sbr', 'Sabra08G0148700' => 'sbr', 'Sabra09G0117400' => 'sbr', 'SalBow1G3326' => 'sbo', 'SalBow3G3228' => 'sbo', 'SalBow6G1634' => 'sbo', 'SalBow6G3603' => 'sbo', 'SalBow6G5266' => 'sbo', 'SalBow7G2265' => 'sbo', 'SalBow8G0850' => 'sbo', 'SalBow8G2592' => 'sbo', 'Sc05g0009240' => 'sci', 'Sc12g0002300' => 'sci', 'Sc21g0000100' => 'sci', 'Sc21g0004720' => 'sci', 'Sed0002949' => 'sed', 'Sed0004114' => 'sed', 'Sed0004306' => 'sed', 'Sed0006172' => 'sed', 'Sed0008413' => 'sed', 'Sed0013809' => 'sed', 'Sed0019556' => 'sed', 'SEGI_03570' => 'sgi', 'SEGI_07859' => 'sgi', 'SEGI_15042' => 'sgi', 'SEGI_16263' => 'sgi', 'SEGI_16552' => 'sgi', 'SEGI_24331' => 'sgi', 'SEGI_27316' => 'sgi', 'SEGI_29521' => 'sgi', 'SEGI_41342' => 'sgi', 'SGA_v2.0_scaffold27G11617' => 'sas', 'SGA_v2.0_scaffold316G48428' => 'sas', 'SGA_v2.0_scaffold49G18261' => 'sas', 'SGA_v2.0_scaffold7G03831' => 'sas', 'SGA_v2.0_scaffold93G28359' => 'sas', 'SHI02210' => 'shi', 'SHI06028' => 'shi', 'SHI06321' => 'shi', 'SMO111G0012' => 'smo', 'SMO228G0080' => 'smo', 'SMO356G0756' => 'smo', 'Solyc02g080620.3' => 'sly', 'Solyc06g074530.1' => 'sly', 'Solyc11g066890.1' => 'sly', 'Solyc11g072520.3' => 'sly', 'Sopen02g025330' => 'spe', 'Sopen06g031000' => 'spe', 'Sopen09g008240' => 'spe', 'Sopen09g025210' => 'spe', 'Sopen11g026600' => 'spe', 'Sopen11g030170' => 'spe', 'Sp1g10420' => 'spa', 'Sp3g06570' => 'spa', 'Sp4g10660' => 'spa', 'Sp5g16460' => 'spa', 'Sp6g22710' => 'spa', 'TAR365G0112' => 'tar', 'TAR369G0717' => 'tar', 'TAR374G0976' => 'tar', 'TAR623G1128' => 'tar', 'TAR626G1937' => 'tar', 'TAR627G0123' => 'tar', 'TAR628G0305' => 'tar', 'TAR636G1176' => 'tar', 'TAR636G2442' => 'tar', 'THA.LOC104800556' => 'tha', 'THA.LOC104809501' => 'tha', 'THA.LOC104815126' => 'tha', 'THA.LOC104815732' => 'tha', 'THA.LOC104823528' => 'tha', 'Thecc.02G365600' => 'tca', 'Thecc.06G222300' => 'tca', 'Thecc.09G261800' => 'tca', 'Thecc.09G291400' => 'tca', 'Thhalv10003028m.g' => 'esa', 'Thhalv10007886m.g' => 'esa', 'Thhalv10016085m.g' => 'esa', 'Thhalv10016681m.g' => 'esa', 'Thhalv10020951m.g' => 'esa', 'TPR.G15598' => 'tpr', 'TPR.G29305' => 'tpr', 'TPR.G32395' => 'tpr', 'TPR.G36998' => 'tpr', 'TPR.G4227' => 'tpr', 'TWI18G1433' => 'twi', 'TWI31G0755' => 'twi', 'TWI38G0912' => 'twi', 'TWI75G1097' => 'twi', 'TWI75G1619' => 'twi', 'TWI79G1336' => 'twi', 'unitig_0.g943' => 'ugi', 'unitig_0.g944' => 'ugi', 'unitig_22.g6646' => 'ugi', 'unitig_37.g12681' => 'ugi', 'unitig_8.g3290' => 'ugi', 'vmacro03278' => 'vma', 'vmacro12197' => 'vma', 'vmacro14478' => 'vma', 'vmacro15787' => 'vma', 'vmacro15789' => 'vma', 'vmacro15790' => 'vma', 'vmacro15806' => 'vma', 'vmacro22907' => 'vma', 'vmacro22908' => 'vma', 'vmacro22909' => 'vma', 'vmacro23108' => 'vma', 'VMungo0540G0540' => 'vmu', 'VMungo0540G2468' => 'vmu', 'VMungo1080G0390' => 'vmu', 'VMungo1080G1165' => 'vmu', 'VMungo1127G0170' => 'vmu', 'VMungo1127G2099' => 'vmu', 'VMungo1215G3013' => 'vmu', 'Zm00001eb013110' => 'zma', 'Zm00001eb084260' => 'zma', 'Zm00001eb096110' => 'zma', 'Zm00001eb217510' => 'zma', 'Zm00001eb322550' => 'zma', 'Zm00001eb390770' => 'zma', 'Zm00001eb397170' => 'zma', 'Zm00001eb404610' => 'zma', 'Zm00001eb421790' => 'zma' ) $gf_id = 'HOM05D000911' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000911' ) $data_identifier = 'HOM05D000911' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 16, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 5, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 6, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 8, 'nnu' => (int) 16, 'oeu' => (int) 8, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 5, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 16, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421790' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000911', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27780' => 'bna', 'A03p35380' => 'bna', 'A04p21160' => 'bna', 'A05p40570' => 'bna', 'A06p26900' => 'bna', 'A08p33230' => 'bna', 'A09p65960' => 'bna', 'A10p18290' => 'bna', 'Aa31LG1G12990' => 'aar', 'Aa31LG1G2980' => 'aar', 'Aa31LG4G14320' => 'aar', 'Aa31LG7G11800' => 'aar', 'Aa31sc36G50' => 'aar', 'Aa31sc36G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3721' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5459' => 'aag', 'Actinidia03028' => 'ach', 'Actinidia03753' => 'ach', 'Actinidia04187' => 'ach', 'Actinidia05509' => 'ach', 'Actinidia24180' => 'ach', 'Actinidia26906' => 'ach', 'Actinidia37097' => 'ach', 'Actinidia38249' => 'ach', 'Ah.01g003470' => 'amhyb', 'Ah.01g004580' => 'amhyb', 'Ah.01g014850' => 'amhyb', 'Ah.01g016830' => 'amhyb', 'Ah.14g088000' => 'amhyb', 'AL1G22980' => 'aly', 'AL3G18990' => 'aly', 'AL4G22440' => 'aly', 'AL4G33180' => 'aly', 'AL5G22920' => 'aly', 'AL6G33660' => 'aly', 'AL8G20720' => 'aly', 'Aqoxy1G00935' => 'aox', 'Aqoxy1G02094' => 'aox', 'Aqoxy2G01239' => 'aox', 'Aqoxy4G01870' => 'aox', 'Aqoxy7G00450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.36ZVTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71EM27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5D6C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH3WRE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3NCM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RIM768' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YB5YRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z36GDV' => 'arhy', 'AT1G08250' => 'ath', 'AT1G11790' => 'ath', 'AT2G27820' => 'ath', 'AT3G07630' => 'ath', 'AT3G44720' => 'ath', 'AT5G22630' => 'ath', 'ATR0693G304' => 'atr', 'ATR0794G109' => 'atr', 'ATR0820G120' => 'atr', 'ATR1159G064' => 'atr', 'Atru.chr10.2239' => 'acertr', 'Atru.chr3.3371' => 'acertr', 'Atru.chr6.3202' => 'acertr', 'AUR62006499' => 'cqu', 'AUR62012718' => 'cqu', 'AUR62021938' => 'cqu', 'AUR62023932' => 'cqu', 'AUR62025034' => 'cqu', 'AUR62025035' => 'cqu', 'AUR62038307' => 'cqu', 'AUR62043466' => 'cqu', 'BcaB02g10748' => 'bca', 'BcaB03g13231' => 'bca', 'BcaB03g14689' => 'bca', 'BcaB05g22716' => 'bca', 'BcaB06g28172' => 'bca', 'BcaB08g36413' => 'bca', 'BcaC01g02186' => 'bca', 'BcaC01g04272' => 'bca', 'BcaC02g08080' => 'bca', 'BcaC02g08227' => 'bca', 'BcaC03g13901' => 'bca', 'BcaC04g19593' => 'bca', 'BcaC04g20874' => 'bca', 'BcaC05g29557' => 'bca', 'BcaC06g35505' => 'bca', 'BcaC07g41954' => 'bca', 'BcaC07g41955' => 'bca', 'BcaC07g41956' => 'bca', 'BcaC07g42519' => 'bca', 'BcaC07g42520' => 'bca', 'BcaC07g42523' => 'bca', 'BcaC07g42524' => 'bca', 'BcaC07g42525' => 'bca', 'BcaC08g47480' => 'bca', 'BcaC08g47481' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00530' => 'bna', 'BolC2t07178H' => 'bol', 'BolC3t16567H' => 'bol', 'BolC4t27234H' => 'bol', 'BolC5t29728H' => 'bol', 'BolC5t34622H' => 'bol', 'BolC6t40321H' => 'bol', 'BolC7t42028H' => 'bol', 'BolC8t49125H' => 'bol', 'BolC8t52538H' => 'bol', 'BolC8t52539H' => 'bol', 'BolC9t56681H' => 'bol', 'BolC9t58266H' => 'bol', 'BolSC21t60294H' => 'bol', 'BraA02t05670Z' => 'bra', 'BraA03t12716Z' => 'bra', 'BraA04t17685Z' => 'bra', 'BraA05t22788Z' => 'bra', 'BraA06t24032Z' => 'bra', 'BraA06t25625Z' => 'bra', 'BraA07t27930Z' => 'bra', 'BraA08t35242Z' => 'bra', 'BraA09t38609Z' => 'bra', 'BraA10t43905Z' => 'bra', 'C02p11060' => 'bna', 'C03p42990' => 'bna', 'C03p67310' => 'bna', 'C04p56990' => 'bna', 'C04p58660' => 'bna', 'C05p09890' => 'bna', 'C05p59680' => 'bna', 'C06p19830' => 'bna', 'C06p53040' => 'bna', 'C07p15230' => 'bna', 'C08p50070' => 'bna', 'C08p50090' => 'bna', 'C09p38330' => 'bna', 'C09p53940' => 'bna', 'CAN.G1014.1' => 'can', 'CAN.G644.30' => 'can', 'CAN.G84.47' => 'can', 'CAN.G919.8' => 'can', 'CANSAT54G0113' => 'cansat', 'CANSAT54G1286' => 'cansat', 'CANSAT64G1020' => 'cansat', 'CARHR008080' => 'chi', 'CARHR008090' => 'chi', 'CARHR012130' => 'chi', 'CARHR038390' => 'chi', 'CARHR082330' => 'chi', 'CARHR120520' => 'chi', 'CARHR151470' => 'chi', 'CARHR190950' => 'chi', 'Carub.0001s0760' => 'cru', 'Carub.0001s1146' => 'cru', 'Carub.0003s0721' => 'cru', 'Carub.0004s0858' => 'cru', 'Carub.0005s1040' => 'cru', 'Carub.0006s2035' => 'cru', 'Carub.0015s0005' => 'cru', 'Ca_01607_v3' => 'car', 'Ca_01677_v3' => 'car', 'Ca_06087_v3' => 'car', 'Ca_19238_v3' => 'car', 'Ca_19373_v3' => 'car', 'Ca_21079_v3' => 'car', 'CBR_g54016' => 'cbr', 'CBR_g54018' => 'cbr', 'CBR_g54020' => 'cbr', 'Cc01_g09780' => 'ccan', 'Cc01_g11680' => 'ccan', 'Cc02_g15610' => 'ccan', 'Cc05_g04350' => 'ccan', 'Cc09_g01580' => 'ccan', 'CDE01G0795' => 'cde', 'CDE02G2024' => 'cde', 'CDE02G2260' => 'cde', 'CDE02G4561' => 'cde', 'CDE05G2733' => 'cde', 'CDE05G3422' => 'cde', 'CDE06G2003' => 'cde', 'CDE08G0576' => 'cde', 'CDE09G0048' => 'cde', 'CDE11G0805' => 'cde', 'Cfa003644' => 'cfa', 'Cfa006290' => 'cfa', 'Cfa010080' => 'cfa', 'Cfa011376' => 'cfa', 'Cfa011576' => 'cfa', 'Cfa011577' => 'cfa', 'Cfa014389' => 'cfa', 'Ciclev10006044m.g' => 'ccl', 'Ciclev10006954m.g' => 'ccl', 'Ciclev10015131m.g' => 'ccl', 'Ciclev10015580m.g' => 'ccl', 'Ciclev10028359m.g' => 'ccl', 'Ciclev10028573m.g' => 'ccl', 'CiPaw.03G159300' => 'cil', 'CiPaw.04G115100' => 'cil', 'CiPaw.09G092800' => 'cil', 'CiPaw.10G071800' => 'cil', 'CiPaw.13G105800' => 'cil', 'CiPaw.13G141000' => 'cil', 'CiPaw.14G103400' => 'cil', 'ClCG01G012700' => 'cla', 'ClCG01G012720' => 'cla', 'ClCG01G021920' => 'cla', 'ClCG02G008870' => 'cla', 'ClCG02G020840' => 'cla', 'ClCG02G021930' => 'cla', 'COL.COLO4_19302' => 'col', 'COL.COLO4_25262' => 'col', 'COL.COLO4_31788' => 'col', 'Cpa.g.c34684' => 'cpa', 'Cpa.g.c36520.1' => 'cpa', 'Cpa.g.c45626' => 'cpa', 'Cpa.g.sc121.17' => 'cpa', 'Cpa.g.sc13.22' => 'cpa', 'Cpa.g.sc87.88' => 'cpa', 'Cre06.g261800' => 'cre', 'CsaV3_1G014500' => 'csa', 'CsaV3_1G014510' => 'csa', 'CsaV3_2G034880' => 'csa', 'CsaV3_6G014760' => 'csa', 'CsaV3_6G021500' => 'csa', 'CsaV3_6G048980' => 'csa', 'CSS0002511' => 'camsi', 'CSS0007556' => 'camsi', 'CSS0008532' => 'camsi', 'CSS0009709' => 'camsi', 'CSS0010486' => 'camsi', 'CSS0016768' => 'camsi', 'CSS0023512' => 'camsi', 'CSS0025341' => 'camsi', 'CSS0027999' => 'camsi', 'CSS0028944' => 'camsi', 'CSS0032292' => 'camsi', 'CSS0032464' => 'camsi', 'CSS0037153' => 'camsi', 'CSS0039256' => 'camsi', 'CSS0048392' => 'camsi', 'CSS0050458' => 'camsi', 'DCAR_004224' => 'dca', 'DCAR_006147' => 'dca', 'DCAR_006465' => 'dca', 'DCAR_008159' => 'dca', 'DCAR_012164' => 'dca', 'DCAR_019764' => 'dca', 'Dinv05418' => 'din', 'Dinv10839' => 'din', 'Dinv12521' => 'din', 'Dinv13900' => 'din', 'Dinv29426' => 'din', 'Duzib150G0263' => 'dzi', 'Duzib168G1178' => 'dzi', 'Duzib168G1924' => 'dzi', 'Duzib170G0299' => 'dzi', 'Duzib170G0813' => 'dzi', 'Duzib235G1128' => 'dzi', 'Duzib248G1060' => 'dzi', 'ECA232G1910' => 'eca', 'ECA233G4621' => 'eca', 'ECA238G1216' => 'eca', 'ECA238G1784' => 'eca', 'ECA248G1242' => 'eca', 'EL10Ac8g20071' => 'bvu', 'EL10Ac9g21086' => 'bvu', 'EL10Ac9g22407' => 'bvu', 'EL10Ac9g22412' => 'bvu', 'Eucgr.A01119' => 'egr', 'Eucgr.E04043' => 'egr', 'Eucgr.J00428' => 'egr', 'Eucgr.J00958' => 'egr', 'FAN11G3091' => 'fan', 'FAN11G3651' => 'fan', 'FAN16G2566' => 'fan', 'FAN21G3155' => 'fan', 'FAN21G3400' => 'fan', 'FAN21G3543' => 'fan', 'FAN25G0234' => 'fan', 'FAN25G1422' => 'fan', 'FAN25G3392' => 'fan', 'FvH4_3g01940' => 'fve', 'FvH4_3g29870' => 'fve', 'FvH4_3g33680' => 'fve', 'Glyma.09G004200' => 'gma', 'Glyma.11G151288' => 'gma', 'Glyma.11G189100' => 'gma', 'Glyma.12G072500' => 'gma', 'Glyma.12G085500' => 'gma', 'Glyma.12G181800' => 'gma', 'Glyma.12G193000' => 'gma', 'Glyma.13G309300' => 'gma', 'Glyma.13G319000' => 'gma', 'Glyma.17G012600' => 'gma', 'Gohir.A06G148600' => 'ghi', 'Gohir.A07G115800' => 'ghi', 'Gohir.A08G003600' => 'ghi', 'Gohir.A09G093300' => 'ghi', 'Gohir.A09G105400' => 'ghi', 'Gohir.A09G105500' => 'ghi', 'Gohir.D06G154600' => 'ghi', 'Gohir.D07G120200' => 'ghi', 'Gohir.D08G013900' => 'ghi', 'Gohir.D09G093100' => 'ghi', 'Gohir.D09G102200' => 'ghi', 'Gohir.D09G102300' => 'ghi', 'Gorai.001G129400' => 'gra', 'Gorai.004G008200' => 'gra', 'Gorai.006G109800' => 'gra', 'Gorai.006G119500' => 'gra', 'Gorai.006G121300' => 'gra', 'Gorai.010G180700' => 'gra', 'GSVIVG01012716001' => 'vvi', 'GSVIVG01025118001' => 'vvi', 'GSVIVG01030439001' => 'vvi', 'GSVIVG01031397001' => 'vvi', 'HanXRQChr01g0004201' => 'han', 'HanXRQChr02g0054941' => 'han', 'HanXRQChr05g0141811' => 'han', 'HanXRQChr07g0197751' => 'han', 'HanXRQChr11g0346691' => 'han', 'HanXRQChr13g0396971' => 'han', 'HanXRQChr14g0432951' => 'han', 'HanXRQChr14g0452001' => 'han', 'HanXRQChr15g0496681' => 'han', 'HanXRQChr17g0557491' => 'han', 'HanXRQChr17g0557501' => 'han', 'Haze_06809' => 'cav', 'Haze_12852' => 'cav', 'Haze_15850' => 'cav', 'Haze_23446' => 'cav', 'Haze_23942' => 'cav', 'Haze_23943' => 'cav', 'Hma1.2p1_0091F.1_g046450' => 'hma', 'Hma1.2p1_0128F.1_g059910' => 'hma', 'Hma1.2p1_0249F.1_g102260' => 'hma', 'Hma1.2p1_0453F.1_g156190' => 'hma', 'Hma1.2p1_0695F.1_g204380' => 'hma', 'Hma1.2p1_0749F.1_g212650' => 'hma', 'Hma1.2p1_2156F.1_g315420' => 'hma', 'Hma1.2p1_2686F.1_g326940' => 'hma', 'HPP92_006428' => 'vpl', 'HPP92_012069' => 'vpl', 'HPP92_014129' => 'vpl', 'HPP92_014133' => 'vpl', 'HPP92_017315' => 'vpl', 'HPP92_026445' => 'vpl', 'HPP92_026446' => 'vpl', 'Hund00774' => 'sun', 'Hund07682' => 'sun', 'Hund21413' => 'sun', 'Hund23462' => 'sun', 'Hund23463' => 'sun', 'Lalb_Chr03g0027911' => 'lal', 'Lalb_Chr13g0304271' => 'lal', 'Lalb_Chr19g0137471' => 'lal', 'Lalb_Chr22g0350651' => 'lal', 'Lalb_Chr24g0395151' => 'lal', 'Lj1A1231T40' => 'lonja', 'Lj1A221T48' => 'lonja', 'Lj1C924T12' => 'lonja', 'Lj2C993G6' => 'lonja', 'Lj3g0005790' => 'lja', 'Lj3g0015432' => 'lja', 'Lj3g0017722' => 'lja', 'Lj3g0018497' => 'lja', 'Lj4g0025071' => 'lja', 'Lsat_1_v5_gn_1_129680' => 'lsa', 'Lsat_1_v5_gn_2_25321' => 'lsa', 'Lsat_1_v5_gn_2_95461' => 'lsa', 'Lsat_1_v5_gn_4_159620' => 'lsa', 'Lsat_1_v5_gn_6_41301' => 'lsa', 'Lsat_1_v5_gn_6_74660' => 'lsa', 'Lsat_1_v5_gn_7_11520' => 'lsa', 'Lsat_1_v5_gn_9_67680' => 'lsa', 'Manes.04G008300' => 'mes', 'Manes.04G008400' => 'mes', 'Manes.04G026500' => 'mes', 'Manes.10G135300' => 'mes', 'Manes.11G157300' => 'mes', 'Manes.12G074000' => 'mes', 'Manes.16G006200' => 'mes', 'Manes.17G026400' => 'mes', 'Mapoly0024s0086' => 'mpo', 'Mapoly0024s0087' => 'mpo', 'Mapoly0071s0057' => 'mpo', 'Mapoly0204s0012' => 'mpo', 'MBI04_g37681_MAGBIO' => 'mbi', 'MBI05_g17779_MAGBIO' => 'mbi', 'MBI12_g31184_MAGBIO' => 'mbi', 'MBI17_g11083_MAGBIO' => 'mbi', 'MBI18_g03883_MAGBIO' => 'mbi', 'MBI18_g28940_MAGBIO' => 'mbi', 'MCO01G690' => 'mco', 'MD03G1109900' => 'mdo', 'MD03G1134800' => 'mdo', 'MD05G1348000' => 'mdo', 'MD10G1322400' => 'mdo', 'MD11G1123300' => 'mdo', 'MD11G1157600' => 'mdo', 'Medtr2g084875' => 'mtr', 'Medtr2g088130' => 'mtr', 'Medtr4g055310' => 'mtr', 'Medtr4g061070' => 'mtr', 'Medtr4g132250' => 'mtr', 'MELO3C004795.2' => 'cme', 'MELO3C004797.2' => 'cme', 'MELO3C007396.2' => 'cme', 'MELO3C019277.2' => 'cme', 'MELO3C021449.2' => 'cme', 'MELO3C025736.2' => 'cme', 'Migut.D02175' => 'egut', 'Migut.H01573' => 'egut', 'Migut.M01327' => 'egut', 'Migut.N02513' => 'egut', 'MSTRG.14638' => 'ama', 'MSTRG.18632' => 'ama', 'MSTRG.7203' => 'ama', 'Nitab4.5_0000533g0140' => 'nta', 'Nitab4.5_0000888g0150' => 'nta', 'Nitab4.5_0001453g0040' => 'nta', 'Nitab4.5_0002827g0090' => 'nta', 'Nitab4.5_0003082g0040' => 'nta', 'Nitab4.5_0007799g0040' => 'nta', 'Nitab4.5_0008983g0010' => 'nta', 'Nitab4.5_0009017g0020' => 'nta', 'Nn1g02132' => 'nnu', 'Nn1g03492' => 'nnu', 'Nn1g03493' => 'nnu', 'Nn1g03494' => 'nnu', 'Nn1g07164' => 'nnu', 'Nn1g07291' => 'nnu', 'Nn2g10655' => 'nnu', 'Nn2g11652' => 'nnu', 'Nn2g14008' => 'nnu', 'Nn3g17476' => 'nnu', 'Nn3g17477' => 'nnu', 'Nn4g22370' => 'nnu', 'Nn4g25255' => 'nnu', 'Nn5g27755' => 'nnu', 'Nn6g34260' => 'nnu', 'Nn6g35041' => 'nnu', 'Oeu005924.1' => 'oeu', 'Oeu008383.1' => 'oeu', 'Oeu014928.1' => 'oeu', 'Oeu019889.1' => 'oeu', 'Oeu022271.1' => 'oeu', 'Oeu025271.1' => 'oeu', 'Oeu036302.1' => 'oeu', 'Oeu044100.1' => 'oeu', 'Os01g0528300' => 'osa', 'Os03g0286200' => 'osa', 'Os04g0406600' => 'osa', 'Os07g0512000' => 'osa', 'Os07g0694600' => 'osa', 'Os08g0411000' => 'osa', 'Os09g0565700' => 'osa', 'Os09g0566050' => 'osa', 'Os10g0523700' => 'osa', 'Peaxi162Scf00002g00514' => 'pax', 'Peaxi162Scf00047g01817' => 'pax', 'Peaxi162Scf00114g00001' => 'pax', 'Peaxi162Scf00147g00613' => 'pax', 'Peaxi162Scf00389g00425' => 'pax', 'PGR042G1139' => 'pgr', 'PGR042G3273' => 'pgr', 'PGR102G2180' => 'pgr', 'PGR119G0234' => 'pgr', 'PGR119G0668' => 'pgr', 'PGSC0003DMG400007122' => 'stu', 'PGSC0003DMG400016478' => 'stu', 'PGSC0003DMG400025374' => 'stu', 'PGSC0003DMG400026536' => 'stu', 'Phvul.003G079600' => 'pvu', 'Phvul.005G115600' => 'pvu', 'Phvul.005G127100' => 'pvu', 'Phvul.006G149500' => 'pvu', 'Phvul.006G149600' => 'pvu', 'Phvul.011G071800' => 'pvu', 'Phvul.011G090400' => 'pvu', 'Potri.004G013400' => 'ptr', 'Potri.004G188100' => 'ptr', 'Potri.008G195500' => 'ptr', 'Potri.009G148800' => 'ptr', 'Potri.011G004700' => 'ptr', 'Pp3c17_22810' => 'ppa', 'Pp3c18_4480' => 'ppa', 'Pp3c19_13030' => 'ppa', 'Pp3c1_33620' => 'ppa', 'Pp3c2_9380' => 'ppa', 'PRCOL_00001023' => 'pco', 'Prupe.3G216300' => 'ppe', 'Prupe.4G019500' => 'ppe', 'Prupe.6G092500' => 'ppe', 'Prupe.6G119200' => 'ppe', 'Psat0s1945g0080' => 'psa', 'Psat0s4167g0040' => 'psa', 'Psat1g185800' => 'psa', 'Psat4g006440' => 'psa', 'Psat4g006480' => 'psa', 'Psat4g168120' => 'psa', 'Psat5g255680' => 'psa', 'Psat5g261760' => 'psa', 'Psat7g222120' => 'psa', 'PSO063G7252' => 'pso', 'PSO170G4778' => 'pso', 'PSO210G2249' => 'pso', 'PSO339G2411' => 'pso', 'PSO339G2457' => 'pso', 'PSO339G2854' => 'pso', 'PSO339G4288' => 'pso', 'PSO339G4615' => 'pso', 'PSO384G2796' => 'pso', 'PSO384G2940' => 'pso', 'PSO384G4227' => 'pso', 'PSO478G1425' => 'pso', 'PSO541G3863' => 'pso', 'PSO675G0507' => 'pso', 'PSO782G0338' => 'pso', 'PSO832G0644' => 'pso', 'QL01p013664' => 'qlo', 'QL01p036598' => 'qlo', 'QL05p072984' => 'qlo', 'QL08p005768' => 'qlo', 'QL08p032743' => 'qlo', 'QL93p0073_0439' => 'qlo', 'QL93p0073_0444' => 'qlo', 'RcHm_v2.0_Chr5g0002851' => 'rch', 'RcHm_v2.0_Chr5g0055201' => 'rch', 'RcHm_v2.0_Chr5g0061191' => 'rch', 'RcHm_v2.0_Chr7g0203231' => 'rch', 'Rhsim01G0208100' => 'rsi', 'Rhsim01G0208200' => 'rsi', 'Rhsim02G0106500' => 'rsi', 'Rhsim03G0107900' => 'rsi', 'Rhsim06G0163400' => 'rsi', 'Rhsim13G0105200' => 'rsi', 'Sabra04G0006300' => 'sbr', 'Sabra04G0127000' => 'sbr', 'Sabra08G0148700' => 'sbr', 'Sabra09G0117400' => 'sbr', 'SalBow1G3326' => 'sbo', 'SalBow3G3228' => 'sbo', 'SalBow6G1634' => 'sbo', 'SalBow6G3603' => 'sbo', 'SalBow6G5266' => 'sbo', 'SalBow7G2265' => 'sbo', 'SalBow8G0850' => 'sbo', 'SalBow8G2592' => 'sbo', 'Sc05g0009240' => 'sci', 'Sc12g0002300' => 'sci', 'Sc21g0000100' => 'sci', 'Sc21g0004720' => 'sci', 'Sed0002949' => 'sed', 'Sed0004114' => 'sed', 'Sed0004306' => 'sed', 'Sed0006172' => 'sed', 'Sed0008413' => 'sed', 'Sed0013809' => 'sed', 'Sed0019556' => 'sed', 'SEGI_03570' => 'sgi', 'SEGI_07859' => 'sgi', 'SEGI_15042' => 'sgi', 'SEGI_16263' => 'sgi', 'SEGI_16552' => 'sgi', 'SEGI_24331' => 'sgi', 'SEGI_27316' => 'sgi', 'SEGI_29521' => 'sgi', 'SEGI_41342' => 'sgi', 'SGA_v2.0_scaffold27G11617' => 'sas', 'SGA_v2.0_scaffold316G48428' => 'sas', 'SGA_v2.0_scaffold49G18261' => 'sas', 'SGA_v2.0_scaffold7G03831' => 'sas', 'SGA_v2.0_scaffold93G28359' => 'sas', 'SHI02210' => 'shi', 'SHI06028' => 'shi', 'SHI06321' => 'shi', 'SMO111G0012' => 'smo', 'SMO228G0080' => 'smo', 'SMO356G0756' => 'smo', 'Solyc02g080620.3' => 'sly', 'Solyc06g074530.1' => 'sly', 'Solyc11g066890.1' => 'sly', 'Solyc11g072520.3' => 'sly', 'Sopen02g025330' => 'spe', 'Sopen06g031000' => 'spe', 'Sopen09g008240' => 'spe', 'Sopen09g025210' => 'spe', 'Sopen11g026600' => 'spe', 'Sopen11g030170' => 'spe', 'Sp1g10420' => 'spa', 'Sp3g06570' => 'spa', 'Sp4g10660' => 'spa', 'Sp5g16460' => 'spa', 'Sp6g22710' => 'spa', 'TAR365G0112' => 'tar', 'TAR369G0717' => 'tar', 'TAR374G0976' => 'tar', 'TAR623G1128' => 'tar', 'TAR626G1937' => 'tar', 'TAR627G0123' => 'tar', 'TAR628G0305' => 'tar', 'TAR636G1176' => 'tar', 'TAR636G2442' => 'tar', 'THA.LOC104800556' => 'tha', 'THA.LOC104809501' => 'tha', 'THA.LOC104815126' => 'tha', 'THA.LOC104815732' => 'tha', 'THA.LOC104823528' => 'tha', 'Thecc.02G365600' => 'tca', 'Thecc.06G222300' => 'tca', 'Thecc.09G261800' => 'tca', 'Thecc.09G291400' => 'tca', 'Thhalv10003028m.g' => 'esa', 'Thhalv10007886m.g' => 'esa', 'Thhalv10016085m.g' => 'esa', 'Thhalv10016681m.g' => 'esa', 'Thhalv10020951m.g' => 'esa', 'TPR.G15598' => 'tpr', 'TPR.G29305' => 'tpr', 'TPR.G32395' => 'tpr', 'TPR.G36998' => 'tpr', 'TPR.G4227' => 'tpr', 'TWI18G1433' => 'twi', 'TWI31G0755' => 'twi', 'TWI38G0912' => 'twi', 'TWI75G1097' => 'twi', 'TWI75G1619' => 'twi', 'TWI79G1336' => 'twi', 'unitig_0.g943' => 'ugi', 'unitig_0.g944' => 'ugi', 'unitig_22.g6646' => 'ugi', 'unitig_37.g12681' => 'ugi', 'unitig_8.g3290' => 'ugi', 'vmacro03278' => 'vma', 'vmacro12197' => 'vma', 'vmacro14478' => 'vma', 'vmacro15787' => 'vma', 'vmacro15789' => 'vma', 'vmacro15790' => 'vma', 'vmacro15806' => 'vma', 'vmacro22907' => 'vma', 'vmacro22908' => 'vma', 'vmacro22909' => 'vma', 'vmacro23108' => 'vma', 'VMungo0540G0540' => 'vmu', 'VMungo0540G2468' => 'vmu', 'VMungo1080G0390' => 'vmu', 'VMungo1080G1165' => 'vmu', 'VMungo1127G0170' => 'vmu', 'VMungo1127G2099' => 'vmu', 'VMungo1215G3013' => 'vmu', 'Zm00001eb013110' => 'zma', 'Zm00001eb084260' => 'zma', 'Zm00001eb096110' => 'zma', 'Zm00001eb217510' => 'zma', 'Zm00001eb322550' => 'zma', 'Zm00001eb390770' => 'zma', 'Zm00001eb397170' => 'zma', 'Zm00001eb404610' => 'zma', 'Zm00001eb421790' => 'zma' ), 'gf_id' => 'HOM05D000911', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000911' ), 'data_identifier' => 'HOM05D000911', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000911', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27780' => 'bna', 'A03p35380' => 'bna', 'A04p21160' => 'bna', 'A05p40570' => 'bna', 'A06p26900' => 'bna', 'A08p33230' => 'bna', 'A09p65960' => 'bna', 'A10p18290' => 'bna', 'Aa31LG1G12990' => 'aar', 'Aa31LG1G2980' => 'aar', 'Aa31LG4G14320' => 'aar', 'Aa31LG7G11800' => 'aar', 'Aa31sc36G50' => 'aar', 'Aa31sc36G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3721' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5459' => 'aag', 'Actinidia03028' => 'ach', 'Actinidia03753' => 'ach', 'Actinidia04187' => 'ach', 'Actinidia05509' => 'ach', 'Actinidia24180' => 'ach', 'Actinidia26906' => 'ach', 'Actinidia37097' => 'ach', 'Actinidia38249' => 'ach', 'Ah.01g003470' => 'amhyb', 'Ah.01g004580' => 'amhyb', 'Ah.01g014850' => 'amhyb', 'Ah.01g016830' => 'amhyb', 'Ah.14g088000' => 'amhyb', 'AL1G22980' => 'aly', 'AL3G18990' => 'aly', 'AL4G22440' => 'aly', 'AL4G33180' => 'aly', 'AL5G22920' => 'aly', 'AL6G33660' => 'aly', 'AL8G20720' => 'aly', 'Aqoxy1G00935' => 'aox', 'Aqoxy1G02094' => 'aox', 'Aqoxy2G01239' => 'aox', 'Aqoxy4G01870' => 'aox', 'Aqoxy7G00450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.36ZVTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71EM27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5D6C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH3WRE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3NCM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RIM768' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YB5YRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z36GDV' => 'arhy', 'AT1G08250' => 'ath', 'AT1G11790' => 'ath', 'AT2G27820' => 'ath', 'AT3G07630' => 'ath', 'AT3G44720' => 'ath', 'AT5G22630' => 'ath', 'ATR0693G304' => 'atr', 'ATR0794G109' => 'atr', 'ATR0820G120' => 'atr', 'ATR1159G064' => 'atr', 'Atru.chr10.2239' => 'acertr', 'Atru.chr3.3371' => 'acertr', 'Atru.chr6.3202' => 'acertr', 'AUR62006499' => 'cqu', 'AUR62012718' => 'cqu', 'AUR62021938' => 'cqu', 'AUR62023932' => 'cqu', 'AUR62025034' => 'cqu', 'AUR62025035' => 'cqu', 'AUR62038307' => 'cqu', 'AUR62043466' => 'cqu', 'BcaB02g10748' => 'bca', 'BcaB03g13231' => 'bca', 'BcaB03g14689' => 'bca', 'BcaB05g22716' => 'bca', 'BcaB06g28172' => 'bca', 'BcaB08g36413' => 'bca', 'BcaC01g02186' => 'bca', 'BcaC01g04272' => 'bca', 'BcaC02g08080' => 'bca', 'BcaC02g08227' => 'bca', 'BcaC03g13901' => 'bca', 'BcaC04g19593' => 'bca', 'BcaC04g20874' => 'bca', 'BcaC05g29557' => 'bca', 'BcaC06g35505' => 'bca', 'BcaC07g41954' => 'bca', 'BcaC07g41955' => 'bca', 'BcaC07g41956' => 'bca', 'BcaC07g42519' => 'bca', 'BcaC07g42520' => 'bca', 'BcaC07g42523' => 'bca', 'BcaC07g42524' => 'bca', 'BcaC07g42525' => 'bca', 'BcaC08g47480' => 'bca', 'BcaC08g47481' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00530' => 'bna', 'BolC2t07178H' => 'bol', 'BolC3t16567H' => 'bol', 'BolC4t27234H' => 'bol', 'BolC5t29728H' => 'bol', 'BolC5t34622H' => 'bol', 'BolC6t40321H' => 'bol', 'BolC7t42028H' => 'bol', 'BolC8t49125H' => 'bol', 'BolC8t52538H' => 'bol', 'BolC8t52539H' => 'bol', 'BolC9t56681H' => 'bol', 'BolC9t58266H' => 'bol', 'BolSC21t60294H' => 'bol', 'BraA02t05670Z' => 'bra', 'BraA03t12716Z' => 'bra', 'BraA04t17685Z' => 'bra', 'BraA05t22788Z' => 'bra', 'BraA06t24032Z' => 'bra', 'BraA06t25625Z' => 'bra', 'BraA07t27930Z' => 'bra', 'BraA08t35242Z' => 'bra', 'BraA09t38609Z' => 'bra', 'BraA10t43905Z' => 'bra', 'C02p11060' => 'bna', 'C03p42990' => 'bna', 'C03p67310' => 'bna', 'C04p56990' => 'bna', 'C04p58660' => 'bna', 'C05p09890' => 'bna', 'C05p59680' => 'bna', 'C06p19830' => 'bna', 'C06p53040' => 'bna', 'C07p15230' => 'bna', 'C08p50070' => 'bna', 'C08p50090' => 'bna', 'C09p38330' => 'bna', 'C09p53940' => 'bna', 'CAN.G1014.1' => 'can', 'CAN.G644.30' => 'can', 'CAN.G84.47' => 'can', 'CAN.G919.8' => 'can', 'CANSAT54G0113' => 'cansat', 'CANSAT54G1286' => 'cansat', 'CANSAT64G1020' => 'cansat', 'CARHR008080' => 'chi', 'CARHR008090' => 'chi', 'CARHR012130' => 'chi', 'CARHR038390' => 'chi', 'CARHR082330' => 'chi', 'CARHR120520' => 'chi', 'CARHR151470' => 'chi', 'CARHR190950' => 'chi', 'Carub.0001s0760' => 'cru', 'Carub.0001s1146' => 'cru', 'Carub.0003s0721' => 'cru', 'Carub.0004s0858' => 'cru', 'Carub.0005s1040' => 'cru', 'Carub.0006s2035' => 'cru', 'Carub.0015s0005' => 'cru', 'Ca_01607_v3' => 'car', 'Ca_01677_v3' => 'car', 'Ca_06087_v3' => 'car', 'Ca_19238_v3' => 'car', 'Ca_19373_v3' => 'car', 'Ca_21079_v3' => 'car', 'CBR_g54016' => 'cbr', 'CBR_g54018' => 'cbr', 'CBR_g54020' => 'cbr', 'Cc01_g09780' => 'ccan', 'Cc01_g11680' => 'ccan', 'Cc02_g15610' => 'ccan', 'Cc05_g04350' => 'ccan', 'Cc09_g01580' => 'ccan', 'CDE01G0795' => 'cde', 'CDE02G2024' => 'cde', 'CDE02G2260' => 'cde', 'CDE02G4561' => 'cde', 'CDE05G2733' => 'cde', 'CDE05G3422' => 'cde', 'CDE06G2003' => 'cde', 'CDE08G0576' => 'cde', 'CDE09G0048' => 'cde', 'CDE11G0805' => 'cde', 'Cfa003644' => 'cfa', 'Cfa006290' => 'cfa', 'Cfa010080' => 'cfa', 'Cfa011376' => 'cfa', 'Cfa011576' => 'cfa', 'Cfa011577' => 'cfa', 'Cfa014389' => 'cfa', 'Ciclev10006044m.g' => 'ccl', 'Ciclev10006954m.g' => 'ccl', 'Ciclev10015131m.g' => 'ccl', 'Ciclev10015580m.g' => 'ccl', 'Ciclev10028359m.g' => 'ccl', 'Ciclev10028573m.g' => 'ccl', 'CiPaw.03G159300' => 'cil', 'CiPaw.04G115100' => 'cil', 'CiPaw.09G092800' => 'cil', 'CiPaw.10G071800' => 'cil', 'CiPaw.13G105800' => 'cil', 'CiPaw.13G141000' => 'cil', 'CiPaw.14G103400' => 'cil', 'ClCG01G012700' => 'cla', 'ClCG01G012720' => 'cla', 'ClCG01G021920' => 'cla', 'ClCG02G008870' => 'cla', 'ClCG02G020840' => 'cla', 'ClCG02G021930' => 'cla', 'COL.COLO4_19302' => 'col', 'COL.COLO4_25262' => 'col', 'COL.COLO4_31788' => 'col', 'Cpa.g.c34684' => 'cpa', 'Cpa.g.c36520.1' => 'cpa', 'Cpa.g.c45626' => 'cpa', 'Cpa.g.sc121.17' => 'cpa', 'Cpa.g.sc13.22' => 'cpa', 'Cpa.g.sc87.88' => 'cpa', 'Cre06.g261800' => 'cre', 'CsaV3_1G014500' => 'csa', 'CsaV3_1G014510' => 'csa', 'CsaV3_2G034880' => 'csa', 'CsaV3_6G014760' => 'csa', 'CsaV3_6G021500' => 'csa', 'CsaV3_6G048980' => 'csa', 'CSS0002511' => 'camsi', 'CSS0007556' => 'camsi', 'CSS0008532' => 'camsi', 'CSS0009709' => 'camsi', 'CSS0010486' => 'camsi', 'CSS0016768' => 'camsi', 'CSS0023512' => 'camsi', 'CSS0025341' => 'camsi', 'CSS0027999' => 'camsi', 'CSS0028944' => 'camsi', 'CSS0032292' => 'camsi', 'CSS0032464' => 'camsi', 'CSS0037153' => 'camsi', 'CSS0039256' => 'camsi', 'CSS0048392' => 'camsi', 'CSS0050458' => 'camsi', 'DCAR_004224' => 'dca', 'DCAR_006147' => 'dca', 'DCAR_006465' => 'dca', 'DCAR_008159' => 'dca', 'DCAR_012164' => 'dca', 'DCAR_019764' => 'dca', 'Dinv05418' => 'din', 'Dinv10839' => 'din', 'Dinv12521' => 'din', 'Dinv13900' => 'din', 'Dinv29426' => 'din', 'Duzib150G0263' => 'dzi', 'Duzib168G1178' => 'dzi', 'Duzib168G1924' => 'dzi', 'Duzib170G0299' => 'dzi', 'Duzib170G0813' => 'dzi', 'Duzib235G1128' => 'dzi', 'Duzib248G1060' => 'dzi', 'ECA232G1910' => 'eca', 'ECA233G4621' => 'eca', 'ECA238G1216' => 'eca', 'ECA238G1784' => 'eca', 'ECA248G1242' => 'eca', 'EL10Ac8g20071' => 'bvu', 'EL10Ac9g21086' => 'bvu', 'EL10Ac9g22407' => 'bvu', 'EL10Ac9g22412' => 'bvu', 'Eucgr.A01119' => 'egr', 'Eucgr.E04043' => 'egr', 'Eucgr.J00428' => 'egr', 'Eucgr.J00958' => 'egr', 'FAN11G3091' => 'fan', 'FAN11G3651' => 'fan', 'FAN16G2566' => 'fan', 'FAN21G3155' => 'fan', 'FAN21G3400' => 'fan', 'FAN21G3543' => 'fan', 'FAN25G0234' => 'fan', 'FAN25G1422' => 'fan', 'FAN25G3392' => 'fan', 'FvH4_3g01940' => 'fve', 'FvH4_3g29870' => 'fve', 'FvH4_3g33680' => 'fve', 'Glyma.09G004200' => 'gma', 'Glyma.11G151288' => 'gma', 'Glyma.11G189100' => 'gma', 'Glyma.12G072500' => 'gma', 'Glyma.12G085500' => 'gma', 'Glyma.12G181800' => 'gma', 'Glyma.12G193000' => 'gma', 'Glyma.13G309300' => 'gma', 'Glyma.13G319000' => 'gma', 'Glyma.17G012600' => 'gma', 'Gohir.A06G148600' => 'ghi', 'Gohir.A07G115800' => 'ghi', 'Gohir.A08G003600' => 'ghi', 'Gohir.A09G093300' => 'ghi', 'Gohir.A09G105400' => 'ghi', 'Gohir.A09G105500' => 'ghi', 'Gohir.D06G154600' => 'ghi', 'Gohir.D07G120200' => 'ghi', 'Gohir.D08G013900' => 'ghi', 'Gohir.D09G093100' => 'ghi', 'Gohir.D09G102200' => 'ghi', 'Gohir.D09G102300' => 'ghi', 'Gorai.001G129400' => 'gra', 'Gorai.004G008200' => 'gra', 'Gorai.006G109800' => 'gra', 'Gorai.006G119500' => 'gra', 'Gorai.006G121300' => 'gra', 'Gorai.010G180700' => 'gra', 'GSVIVG01012716001' => 'vvi', 'GSVIVG01025118001' => 'vvi', 'GSVIVG01030439001' => 'vvi', 'GSVIVG01031397001' => 'vvi', 'HanXRQChr01g0004201' => 'han', 'HanXRQChr02g0054941' => 'han', 'HanXRQChr05g0141811' => 'han', 'HanXRQChr07g0197751' => 'han', 'HanXRQChr11g0346691' => 'han', 'HanXRQChr13g0396971' => 'han', 'HanXRQChr14g0432951' => 'han', 'HanXRQChr14g0452001' => 'han', 'HanXRQChr15g0496681' => 'han', 'HanXRQChr17g0557491' => 'han', 'HanXRQChr17g0557501' => 'han', 'Haze_06809' => 'cav', 'Haze_12852' => 'cav', 'Haze_15850' => 'cav', 'Haze_23446' => 'cav', 'Haze_23942' => 'cav', 'Haze_23943' => 'cav', 'Hma1.2p1_0091F.1_g046450' => 'hma', 'Hma1.2p1_0128F.1_g059910' => 'hma', 'Hma1.2p1_0249F.1_g102260' => 'hma', 'Hma1.2p1_0453F.1_g156190' => 'hma', 'Hma1.2p1_0695F.1_g204380' => 'hma', 'Hma1.2p1_0749F.1_g212650' => 'hma', 'Hma1.2p1_2156F.1_g315420' => 'hma', 'Hma1.2p1_2686F.1_g326940' => 'hma', 'HPP92_006428' => 'vpl', 'HPP92_012069' => 'vpl', 'HPP92_014129' => 'vpl', 'HPP92_014133' => 'vpl', 'HPP92_017315' => 'vpl', 'HPP92_026445' => 'vpl', 'HPP92_026446' => 'vpl', 'Hund00774' => 'sun', 'Hund07682' => 'sun', 'Hund21413' => 'sun', 'Hund23462' => 'sun', 'Hund23463' => 'sun', 'Lalb_Chr03g0027911' => 'lal', 'Lalb_Chr13g0304271' => 'lal', 'Lalb_Chr19g0137471' => 'lal', 'Lalb_Chr22g0350651' => 'lal', 'Lalb_Chr24g0395151' => 'lal', 'Lj1A1231T40' => 'lonja', 'Lj1A221T48' => 'lonja', 'Lj1C924T12' => 'lonja', 'Lj2C993G6' => 'lonja', 'Lj3g0005790' => 'lja', 'Lj3g0015432' => 'lja', 'Lj3g0017722' => 'lja', 'Lj3g0018497' => 'lja', 'Lj4g0025071' => 'lja', 'Lsat_1_v5_gn_1_129680' => 'lsa', 'Lsat_1_v5_gn_2_25321' => 'lsa', 'Lsat_1_v5_gn_2_95461' => 'lsa', 'Lsat_1_v5_gn_4_159620' => 'lsa', 'Lsat_1_v5_gn_6_41301' => 'lsa', 'Lsat_1_v5_gn_6_74660' => 'lsa', 'Lsat_1_v5_gn_7_11520' => 'lsa', 'Lsat_1_v5_gn_9_67680' => 'lsa', 'Manes.04G008300' => 'mes', 'Manes.04G008400' => 'mes', 'Manes.04G026500' => 'mes', 'Manes.10G135300' => 'mes', 'Manes.11G157300' => 'mes', 'Manes.12G074000' => 'mes', 'Manes.16G006200' => 'mes', 'Manes.17G026400' => 'mes', 'Mapoly0024s0086' => 'mpo', 'Mapoly0024s0087' => 'mpo', 'Mapoly0071s0057' => 'mpo', 'Mapoly0204s0012' => 'mpo', 'MBI04_g37681_MAGBIO' => 'mbi', 'MBI05_g17779_MAGBIO' => 'mbi', 'MBI12_g31184_MAGBIO' => 'mbi', 'MBI17_g11083_MAGBIO' => 'mbi', 'MBI18_g03883_MAGBIO' => 'mbi', 'MBI18_g28940_MAGBIO' => 'mbi', 'MCO01G690' => 'mco', 'MD03G1109900' => 'mdo', 'MD03G1134800' => 'mdo', 'MD05G1348000' => 'mdo', 'MD10G1322400' => 'mdo', 'MD11G1123300' => 'mdo', 'MD11G1157600' => 'mdo', 'Medtr2g084875' => 'mtr', 'Medtr2g088130' => 'mtr', 'Medtr4g055310' => 'mtr', 'Medtr4g061070' => 'mtr', 'Medtr4g132250' => 'mtr', 'MELO3C004795.2' => 'cme', 'MELO3C004797.2' => 'cme', 'MELO3C007396.2' => 'cme', 'MELO3C019277.2' => 'cme', 'MELO3C021449.2' => 'cme', 'MELO3C025736.2' => 'cme', 'Migut.D02175' => 'egut', 'Migut.H01573' => 'egut', 'Migut.M01327' => 'egut', 'Migut.N02513' => 'egut', 'MSTRG.14638' => 'ama', 'MSTRG.18632' => 'ama', 'MSTRG.7203' => 'ama', 'Nitab4.5_0000533g0140' => 'nta', 'Nitab4.5_0000888g0150' => 'nta', 'Nitab4.5_0001453g0040' => 'nta', 'Nitab4.5_0002827g0090' => 'nta', 'Nitab4.5_0003082g0040' => 'nta', 'Nitab4.5_0007799g0040' => 'nta', 'Nitab4.5_0008983g0010' => 'nta', 'Nitab4.5_0009017g0020' => 'nta', 'Nn1g02132' => 'nnu', 'Nn1g03492' => 'nnu', 'Nn1g03493' => 'nnu', 'Nn1g03494' => 'nnu', 'Nn1g07164' => 'nnu', 'Nn1g07291' => 'nnu', 'Nn2g10655' => 'nnu', 'Nn2g11652' => 'nnu', 'Nn2g14008' => 'nnu', 'Nn3g17476' => 'nnu', 'Nn3g17477' => 'nnu', 'Nn4g22370' => 'nnu', 'Nn4g25255' => 'nnu', 'Nn5g27755' => 'nnu', 'Nn6g34260' => 'nnu', 'Nn6g35041' => 'nnu', 'Oeu005924.1' => 'oeu', 'Oeu008383.1' => 'oeu', 'Oeu014928.1' => 'oeu', 'Oeu019889.1' => 'oeu', 'Oeu022271.1' => 'oeu', 'Oeu025271.1' => 'oeu', 'Oeu036302.1' => 'oeu', 'Oeu044100.1' => 'oeu', 'Os01g0528300' => 'osa', 'Os03g0286200' => 'osa', 'Os04g0406600' => 'osa', 'Os07g0512000' => 'osa', 'Os07g0694600' => 'osa', 'Os08g0411000' => 'osa', 'Os09g0565700' => 'osa', 'Os09g0566050' => 'osa', 'Os10g0523700' => 'osa', 'Peaxi162Scf00002g00514' => 'pax', 'Peaxi162Scf00047g01817' => 'pax', 'Peaxi162Scf00114g00001' => 'pax', 'Peaxi162Scf00147g00613' => 'pax', 'Peaxi162Scf00389g00425' => 'pax', 'PGR042G1139' => 'pgr', 'PGR042G3273' => 'pgr', 'PGR102G2180' => 'pgr', 'PGR119G0234' => 'pgr', 'PGR119G0668' => 'pgr', 'PGSC0003DMG400007122' => 'stu', 'PGSC0003DMG400016478' => 'stu', 'PGSC0003DMG400025374' => 'stu', 'PGSC0003DMG400026536' => 'stu', 'Phvul.003G079600' => 'pvu', 'Phvul.005G115600' => 'pvu', 'Phvul.005G127100' => 'pvu', 'Phvul.006G149500' => 'pvu', 'Phvul.006G149600' => 'pvu', 'Phvul.011G071800' => 'pvu', 'Phvul.011G090400' => 'pvu', 'Potri.004G013400' => 'ptr', 'Potri.004G188100' => 'ptr', 'Potri.008G195500' => 'ptr', 'Potri.009G148800' => 'ptr', 'Potri.011G004700' => 'ptr', 'Pp3c17_22810' => 'ppa', 'Pp3c18_4480' => 'ppa', 'Pp3c19_13030' => 'ppa', 'Pp3c1_33620' => 'ppa', 'Pp3c2_9380' => 'ppa', 'PRCOL_00001023' => 'pco', 'Prupe.3G216300' => 'ppe', 'Prupe.4G019500' => 'ppe', 'Prupe.6G092500' => 'ppe', 'Prupe.6G119200' => 'ppe', 'Psat0s1945g0080' => 'psa', 'Psat0s4167g0040' => 'psa', 'Psat1g185800' => 'psa', 'Psat4g006440' => 'psa', 'Psat4g006480' => 'psa', 'Psat4g168120' => 'psa', 'Psat5g255680' => 'psa', 'Psat5g261760' => 'psa', 'Psat7g222120' => 'psa', 'PSO063G7252' => 'pso', 'PSO170G4778' => 'pso', 'PSO210G2249' => 'pso', 'PSO339G2411' => 'pso', 'PSO339G2457' => 'pso', 'PSO339G2854' => 'pso', 'PSO339G4288' => 'pso', 'PSO339G4615' => 'pso', 'PSO384G2796' => 'pso', 'PSO384G2940' => 'pso', 'PSO384G4227' => 'pso', 'PSO478G1425' => 'pso', 'PSO541G3863' => 'pso', 'PSO675G0507' => 'pso', 'PSO782G0338' => 'pso', 'PSO832G0644' => 'pso', 'QL01p013664' => 'qlo', 'QL01p036598' => 'qlo', 'QL05p072984' => 'qlo', 'QL08p005768' => 'qlo', 'QL08p032743' => 'qlo', 'QL93p0073_0439' => 'qlo', 'QL93p0073_0444' => 'qlo', 'RcHm_v2.0_Chr5g0002851' => 'rch', 'RcHm_v2.0_Chr5g0055201' => 'rch', 'RcHm_v2.0_Chr5g0061191' => 'rch', 'RcHm_v2.0_Chr7g0203231' => 'rch', 'Rhsim01G0208100' => 'rsi', 'Rhsim01G0208200' => 'rsi', 'Rhsim02G0106500' => 'rsi', 'Rhsim03G0107900' => 'rsi', 'Rhsim06G0163400' => 'rsi', 'Rhsim13G0105200' => 'rsi', 'Sabra04G0006300' => 'sbr', 'Sabra04G0127000' => 'sbr', 'Sabra08G0148700' => 'sbr', 'Sabra09G0117400' => 'sbr', 'SalBow1G3326' => 'sbo', 'SalBow3G3228' => 'sbo', 'SalBow6G1634' => 'sbo', 'SalBow6G3603' => 'sbo', 'SalBow6G5266' => 'sbo', 'SalBow7G2265' => 'sbo', 'SalBow8G0850' => 'sbo', 'SalBow8G2592' => 'sbo', 'Sc05g0009240' => 'sci', 'Sc12g0002300' => 'sci', 'Sc21g0000100' => 'sci', 'Sc21g0004720' => 'sci', 'Sed0002949' => 'sed', 'Sed0004114' => 'sed', 'Sed0004306' => 'sed', 'Sed0006172' => 'sed', 'Sed0008413' => 'sed', 'Sed0013809' => 'sed', 'Sed0019556' => 'sed', 'SEGI_03570' => 'sgi', 'SEGI_07859' => 'sgi', 'SEGI_15042' => 'sgi', 'SEGI_16263' => 'sgi', 'SEGI_16552' => 'sgi', 'SEGI_24331' => 'sgi', 'SEGI_27316' => 'sgi', 'SEGI_29521' => 'sgi', 'SEGI_41342' => 'sgi', 'SGA_v2.0_scaffold27G11617' => 'sas', 'SGA_v2.0_scaffold316G48428' => 'sas', 'SGA_v2.0_scaffold49G18261' => 'sas', 'SGA_v2.0_scaffold7G03831' => 'sas', 'SGA_v2.0_scaffold93G28359' => 'sas', 'SHI02210' => 'shi', 'SHI06028' => 'shi', 'SHI06321' => 'shi', 'SMO111G0012' => 'smo', 'SMO228G0080' => 'smo', 'SMO356G0756' => 'smo', 'Solyc02g080620.3' => 'sly', 'Solyc06g074530.1' => 'sly', 'Solyc11g066890.1' => 'sly', 'Solyc11g072520.3' => 'sly', 'Sopen02g025330' => 'spe', 'Sopen06g031000' => 'spe', 'Sopen09g008240' => 'spe', 'Sopen09g025210' => 'spe', 'Sopen11g026600' => 'spe', 'Sopen11g030170' => 'spe', 'Sp1g10420' => 'spa', 'Sp3g06570' => 'spa', 'Sp4g10660' => 'spa', 'Sp5g16460' => 'spa', 'Sp6g22710' => 'spa', 'TAR365G0112' => 'tar', 'TAR369G0717' => 'tar', 'TAR374G0976' => 'tar', 'TAR623G1128' => 'tar', 'TAR626G1937' => 'tar', 'TAR627G0123' => 'tar', 'TAR628G0305' => 'tar', 'TAR636G1176' => 'tar', 'TAR636G2442' => 'tar', 'THA.LOC104800556' => 'tha', 'THA.LOC104809501' => 'tha', 'THA.LOC104815126' => 'tha', 'THA.LOC104815732' => 'tha', 'THA.LOC104823528' => 'tha', 'Thecc.02G365600' => 'tca', 'Thecc.06G222300' => 'tca', 'Thecc.09G261800' => 'tca', 'Thecc.09G291400' => 'tca', 'Thhalv10003028m.g' => 'esa', 'Thhalv10007886m.g' => 'esa', 'Thhalv10016085m.g' => 'esa', 'Thhalv10016681m.g' => 'esa', 'Thhalv10020951m.g' => 'esa', 'TPR.G15598' => 'tpr', 'TPR.G29305' => 'tpr', 'TPR.G32395' => 'tpr', 'TPR.G36998' => 'tpr', 'TPR.G4227' => 'tpr', 'TWI18G1433' => 'twi', 'TWI31G0755' => 'twi', 'TWI38G0912' => 'twi', 'TWI75G1097' => 'twi', 'TWI75G1619' => 'twi', 'TWI79G1336' => 'twi', 'unitig_0.g943' => 'ugi', 'unitig_0.g944' => 'ugi', 'unitig_22.g6646' => 'ugi', 'unitig_37.g12681' => 'ugi', 'unitig_8.g3290' => 'ugi', 'vmacro03278' => 'vma', 'vmacro12197' => 'vma', 'vmacro14478' => 'vma', 'vmacro15787' => 'vma', 'vmacro15789' => 'vma', 'vmacro15790' => 'vma', 'vmacro15806' => 'vma', 'vmacro22907' => 'vma', 'vmacro22908' => 'vma', 'vmacro22909' => 'vma', 'vmacro23108' => 'vma', 'VMungo0540G0540' => 'vmu', 'VMungo0540G2468' => 'vmu', 'VMungo1080G0390' => 'vmu', 'VMungo1080G1165' => 'vmu', 'VMungo1127G0170' => 'vmu', 'VMungo1127G2099' => 'vmu', 'VMungo1215G3013' => 'vmu', 'Zm00001eb013110' => 'zma', 'Zm00001eb084260' => 'zma', 'Zm00001eb096110' => 'zma', 'Zm00001eb217510' => 'zma', 'Zm00001eb322550' => 'zma', 'Zm00001eb390770' => 'zma', 'Zm00001eb397170' => 'zma', 'Zm00001eb404610' => 'zma', 'Zm00001eb421790' => 'zma' ) $gf_id = 'HOM05D000911' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000911' ) $data_identifier = 'HOM05D000911' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 16, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 5, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 6, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 8, 'nnu' => (int) 16, 'oeu' => (int) 8, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 5, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 16, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421790' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000911', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27780' => 'bna', 'A03p35380' => 'bna', 'A04p21160' => 'bna', 'A05p40570' => 'bna', 'A06p26900' => 'bna', 'A08p33230' => 'bna', 'A09p65960' => 'bna', 'A10p18290' => 'bna', 'Aa31LG1G12990' => 'aar', 'Aa31LG1G2980' => 'aar', 'Aa31LG4G14320' => 'aar', 'Aa31LG7G11800' => 'aar', 'Aa31sc36G50' => 'aar', 'Aa31sc36G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3721' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5459' => 'aag', 'Actinidia03028' => 'ach', 'Actinidia03753' => 'ach', 'Actinidia04187' => 'ach', 'Actinidia05509' => 'ach', 'Actinidia24180' => 'ach', 'Actinidia26906' => 'ach', 'Actinidia37097' => 'ach', 'Actinidia38249' => 'ach', 'Ah.01g003470' => 'amhyb', 'Ah.01g004580' => 'amhyb', 'Ah.01g014850' => 'amhyb', 'Ah.01g016830' => 'amhyb', 'Ah.14g088000' => 'amhyb', 'AL1G22980' => 'aly', 'AL3G18990' => 'aly', 'AL4G22440' => 'aly', 'AL4G33180' => 'aly', 'AL5G22920' => 'aly', 'AL6G33660' => 'aly', 'AL8G20720' => 'aly', 'Aqoxy1G00935' => 'aox', 'Aqoxy1G02094' => 'aox', 'Aqoxy2G01239' => 'aox', 'Aqoxy4G01870' => 'aox', 'Aqoxy7G00450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.36ZVTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71EM27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5D6C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH3WRE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3NCM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RIM768' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YB5YRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z36GDV' => 'arhy', 'AT1G08250' => 'ath', 'AT1G11790' => 'ath', 'AT2G27820' => 'ath', 'AT3G07630' => 'ath', 'AT3G44720' => 'ath', 'AT5G22630' => 'ath', 'ATR0693G304' => 'atr', 'ATR0794G109' => 'atr', 'ATR0820G120' => 'atr', 'ATR1159G064' => 'atr', 'Atru.chr10.2239' => 'acertr', 'Atru.chr3.3371' => 'acertr', 'Atru.chr6.3202' => 'acertr', 'AUR62006499' => 'cqu', 'AUR62012718' => 'cqu', 'AUR62021938' => 'cqu', 'AUR62023932' => 'cqu', 'AUR62025034' => 'cqu', 'AUR62025035' => 'cqu', 'AUR62038307' => 'cqu', 'AUR62043466' => 'cqu', 'BcaB02g10748' => 'bca', 'BcaB03g13231' => 'bca', 'BcaB03g14689' => 'bca', 'BcaB05g22716' => 'bca', 'BcaB06g28172' => 'bca', 'BcaB08g36413' => 'bca', 'BcaC01g02186' => 'bca', 'BcaC01g04272' => 'bca', 'BcaC02g08080' => 'bca', 'BcaC02g08227' => 'bca', 'BcaC03g13901' => 'bca', 'BcaC04g19593' => 'bca', 'BcaC04g20874' => 'bca', 'BcaC05g29557' => 'bca', 'BcaC06g35505' => 'bca', 'BcaC07g41954' => 'bca', 'BcaC07g41955' => 'bca', 'BcaC07g41956' => 'bca', 'BcaC07g42519' => 'bca', 'BcaC07g42520' => 'bca', 'BcaC07g42523' => 'bca', 'BcaC07g42524' => 'bca', 'BcaC07g42525' => 'bca', 'BcaC08g47480' => 'bca', 'BcaC08g47481' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00530' => 'bna', 'BolC2t07178H' => 'bol', 'BolC3t16567H' => 'bol', 'BolC4t27234H' => 'bol', 'BolC5t29728H' => 'bol', 'BolC5t34622H' => 'bol', 'BolC6t40321H' => 'bol', 'BolC7t42028H' => 'bol', 'BolC8t49125H' => 'bol', 'BolC8t52538H' => 'bol', 'BolC8t52539H' => 'bol', 'BolC9t56681H' => 'bol', 'BolC9t58266H' => 'bol', 'BolSC21t60294H' => 'bol', 'BraA02t05670Z' => 'bra', 'BraA03t12716Z' => 'bra', 'BraA04t17685Z' => 'bra', 'BraA05t22788Z' => 'bra', 'BraA06t24032Z' => 'bra', 'BraA06t25625Z' => 'bra', 'BraA07t27930Z' => 'bra', 'BraA08t35242Z' => 'bra', 'BraA09t38609Z' => 'bra', 'BraA10t43905Z' => 'bra', 'C02p11060' => 'bna', 'C03p42990' => 'bna', 'C03p67310' => 'bna', 'C04p56990' => 'bna', 'C04p58660' => 'bna', 'C05p09890' => 'bna', 'C05p59680' => 'bna', 'C06p19830' => 'bna', 'C06p53040' => 'bna', 'C07p15230' => 'bna', 'C08p50070' => 'bna', 'C08p50090' => 'bna', 'C09p38330' => 'bna', 'C09p53940' => 'bna', 'CAN.G1014.1' => 'can', 'CAN.G644.30' => 'can', 'CAN.G84.47' => 'can', 'CAN.G919.8' => 'can', 'CANSAT54G0113' => 'cansat', 'CANSAT54G1286' => 'cansat', 'CANSAT64G1020' => 'cansat', 'CARHR008080' => 'chi', 'CARHR008090' => 'chi', 'CARHR012130' => 'chi', 'CARHR038390' => 'chi', 'CARHR082330' => 'chi', 'CARHR120520' => 'chi', 'CARHR151470' => 'chi', 'CARHR190950' => 'chi', 'Carub.0001s0760' => 'cru', 'Carub.0001s1146' => 'cru', 'Carub.0003s0721' => 'cru', 'Carub.0004s0858' => 'cru', 'Carub.0005s1040' => 'cru', 'Carub.0006s2035' => 'cru', 'Carub.0015s0005' => 'cru', 'Ca_01607_v3' => 'car', 'Ca_01677_v3' => 'car', 'Ca_06087_v3' => 'car', 'Ca_19238_v3' => 'car', 'Ca_19373_v3' => 'car', 'Ca_21079_v3' => 'car', 'CBR_g54016' => 'cbr', 'CBR_g54018' => 'cbr', 'CBR_g54020' => 'cbr', 'Cc01_g09780' => 'ccan', 'Cc01_g11680' => 'ccan', 'Cc02_g15610' => 'ccan', 'Cc05_g04350' => 'ccan', 'Cc09_g01580' => 'ccan', 'CDE01G0795' => 'cde', 'CDE02G2024' => 'cde', 'CDE02G2260' => 'cde', 'CDE02G4561' => 'cde', 'CDE05G2733' => 'cde', 'CDE05G3422' => 'cde', 'CDE06G2003' => 'cde', 'CDE08G0576' => 'cde', 'CDE09G0048' => 'cde', 'CDE11G0805' => 'cde', 'Cfa003644' => 'cfa', 'Cfa006290' => 'cfa', 'Cfa010080' => 'cfa', 'Cfa011376' => 'cfa', 'Cfa011576' => 'cfa', 'Cfa011577' => 'cfa', 'Cfa014389' => 'cfa', 'Ciclev10006044m.g' => 'ccl', 'Ciclev10006954m.g' => 'ccl', 'Ciclev10015131m.g' => 'ccl', 'Ciclev10015580m.g' => 'ccl', 'Ciclev10028359m.g' => 'ccl', 'Ciclev10028573m.g' => 'ccl', 'CiPaw.03G159300' => 'cil', 'CiPaw.04G115100' => 'cil', 'CiPaw.09G092800' => 'cil', 'CiPaw.10G071800' => 'cil', 'CiPaw.13G105800' => 'cil', 'CiPaw.13G141000' => 'cil', 'CiPaw.14G103400' => 'cil', 'ClCG01G012700' => 'cla', 'ClCG01G012720' => 'cla', 'ClCG01G021920' => 'cla', 'ClCG02G008870' => 'cla', 'ClCG02G020840' => 'cla', 'ClCG02G021930' => 'cla', 'COL.COLO4_19302' => 'col', 'COL.COLO4_25262' => 'col', 'COL.COLO4_31788' => 'col', 'Cpa.g.c34684' => 'cpa', 'Cpa.g.c36520.1' => 'cpa', 'Cpa.g.c45626' => 'cpa', 'Cpa.g.sc121.17' => 'cpa', 'Cpa.g.sc13.22' => 'cpa', 'Cpa.g.sc87.88' => 'cpa', 'Cre06.g261800' => 'cre', 'CsaV3_1G014500' => 'csa', 'CsaV3_1G014510' => 'csa', 'CsaV3_2G034880' => 'csa', 'CsaV3_6G014760' => 'csa', 'CsaV3_6G021500' => 'csa', 'CsaV3_6G048980' => 'csa', 'CSS0002511' => 'camsi', 'CSS0007556' => 'camsi', 'CSS0008532' => 'camsi', 'CSS0009709' => 'camsi', 'CSS0010486' => 'camsi', 'CSS0016768' => 'camsi', 'CSS0023512' => 'camsi', 'CSS0025341' => 'camsi', 'CSS0027999' => 'camsi', 'CSS0028944' => 'camsi', 'CSS0032292' => 'camsi', 'CSS0032464' => 'camsi', 'CSS0037153' => 'camsi', 'CSS0039256' => 'camsi', 'CSS0048392' => 'camsi', 'CSS0050458' => 'camsi', 'DCAR_004224' => 'dca', 'DCAR_006147' => 'dca', 'DCAR_006465' => 'dca', 'DCAR_008159' => 'dca', 'DCAR_012164' => 'dca', 'DCAR_019764' => 'dca', 'Dinv05418' => 'din', 'Dinv10839' => 'din', 'Dinv12521' => 'din', 'Dinv13900' => 'din', 'Dinv29426' => 'din', 'Duzib150G0263' => 'dzi', 'Duzib168G1178' => 'dzi', 'Duzib168G1924' => 'dzi', 'Duzib170G0299' => 'dzi', 'Duzib170G0813' => 'dzi', 'Duzib235G1128' => 'dzi', 'Duzib248G1060' => 'dzi', 'ECA232G1910' => 'eca', 'ECA233G4621' => 'eca', 'ECA238G1216' => 'eca', 'ECA238G1784' => 'eca', 'ECA248G1242' => 'eca', 'EL10Ac8g20071' => 'bvu', 'EL10Ac9g21086' => 'bvu', 'EL10Ac9g22407' => 'bvu', 'EL10Ac9g22412' => 'bvu', 'Eucgr.A01119' => 'egr', 'Eucgr.E04043' => 'egr', 'Eucgr.J00428' => 'egr', 'Eucgr.J00958' => 'egr', 'FAN11G3091' => 'fan', 'FAN11G3651' => 'fan', 'FAN16G2566' => 'fan', 'FAN21G3155' => 'fan', 'FAN21G3400' => 'fan', 'FAN21G3543' => 'fan', 'FAN25G0234' => 'fan', 'FAN25G1422' => 'fan', 'FAN25G3392' => 'fan', 'FvH4_3g01940' => 'fve', 'FvH4_3g29870' => 'fve', 'FvH4_3g33680' => 'fve', 'Glyma.09G004200' => 'gma', 'Glyma.11G151288' => 'gma', 'Glyma.11G189100' => 'gma', 'Glyma.12G072500' => 'gma', 'Glyma.12G085500' => 'gma', 'Glyma.12G181800' => 'gma', 'Glyma.12G193000' => 'gma', 'Glyma.13G309300' => 'gma', 'Glyma.13G319000' => 'gma', 'Glyma.17G012600' => 'gma', 'Gohir.A06G148600' => 'ghi', 'Gohir.A07G115800' => 'ghi', 'Gohir.A08G003600' => 'ghi', 'Gohir.A09G093300' => 'ghi', 'Gohir.A09G105400' => 'ghi', 'Gohir.A09G105500' => 'ghi', 'Gohir.D06G154600' => 'ghi', 'Gohir.D07G120200' => 'ghi', 'Gohir.D08G013900' => 'ghi', 'Gohir.D09G093100' => 'ghi', 'Gohir.D09G102200' => 'ghi', 'Gohir.D09G102300' => 'ghi', 'Gorai.001G129400' => 'gra', 'Gorai.004G008200' => 'gra', 'Gorai.006G109800' => 'gra', 'Gorai.006G119500' => 'gra', 'Gorai.006G121300' => 'gra', 'Gorai.010G180700' => 'gra', 'GSVIVG01012716001' => 'vvi', 'GSVIVG01025118001' => 'vvi', 'GSVIVG01030439001' => 'vvi', 'GSVIVG01031397001' => 'vvi', 'HanXRQChr01g0004201' => 'han', 'HanXRQChr02g0054941' => 'han', 'HanXRQChr05g0141811' => 'han', 'HanXRQChr07g0197751' => 'han', 'HanXRQChr11g0346691' => 'han', 'HanXRQChr13g0396971' => 'han', 'HanXRQChr14g0432951' => 'han', 'HanXRQChr14g0452001' => 'han', 'HanXRQChr15g0496681' => 'han', 'HanXRQChr17g0557491' => 'han', 'HanXRQChr17g0557501' => 'han', 'Haze_06809' => 'cav', 'Haze_12852' => 'cav', 'Haze_15850' => 'cav', 'Haze_23446' => 'cav', 'Haze_23942' => 'cav', 'Haze_23943' => 'cav', 'Hma1.2p1_0091F.1_g046450' => 'hma', 'Hma1.2p1_0128F.1_g059910' => 'hma', 'Hma1.2p1_0249F.1_g102260' => 'hma', 'Hma1.2p1_0453F.1_g156190' => 'hma', 'Hma1.2p1_0695F.1_g204380' => 'hma', 'Hma1.2p1_0749F.1_g212650' => 'hma', 'Hma1.2p1_2156F.1_g315420' => 'hma', 'Hma1.2p1_2686F.1_g326940' => 'hma', 'HPP92_006428' => 'vpl', 'HPP92_012069' => 'vpl', 'HPP92_014129' => 'vpl', 'HPP92_014133' => 'vpl', 'HPP92_017315' => 'vpl', 'HPP92_026445' => 'vpl', 'HPP92_026446' => 'vpl', 'Hund00774' => 'sun', 'Hund07682' => 'sun', 'Hund21413' => 'sun', 'Hund23462' => 'sun', 'Hund23463' => 'sun', 'Lalb_Chr03g0027911' => 'lal', 'Lalb_Chr13g0304271' => 'lal', 'Lalb_Chr19g0137471' => 'lal', 'Lalb_Chr22g0350651' => 'lal', 'Lalb_Chr24g0395151' => 'lal', 'Lj1A1231T40' => 'lonja', 'Lj1A221T48' => 'lonja', 'Lj1C924T12' => 'lonja', 'Lj2C993G6' => 'lonja', 'Lj3g0005790' => 'lja', 'Lj3g0015432' => 'lja', 'Lj3g0017722' => 'lja', 'Lj3g0018497' => 'lja', 'Lj4g0025071' => 'lja', 'Lsat_1_v5_gn_1_129680' => 'lsa', 'Lsat_1_v5_gn_2_25321' => 'lsa', 'Lsat_1_v5_gn_2_95461' => 'lsa', 'Lsat_1_v5_gn_4_159620' => 'lsa', 'Lsat_1_v5_gn_6_41301' => 'lsa', 'Lsat_1_v5_gn_6_74660' => 'lsa', 'Lsat_1_v5_gn_7_11520' => 'lsa', 'Lsat_1_v5_gn_9_67680' => 'lsa', 'Manes.04G008300' => 'mes', 'Manes.04G008400' => 'mes', 'Manes.04G026500' => 'mes', 'Manes.10G135300' => 'mes', 'Manes.11G157300' => 'mes', 'Manes.12G074000' => 'mes', 'Manes.16G006200' => 'mes', 'Manes.17G026400' => 'mes', 'Mapoly0024s0086' => 'mpo', 'Mapoly0024s0087' => 'mpo', 'Mapoly0071s0057' => 'mpo', 'Mapoly0204s0012' => 'mpo', 'MBI04_g37681_MAGBIO' => 'mbi', 'MBI05_g17779_MAGBIO' => 'mbi', 'MBI12_g31184_MAGBIO' => 'mbi', 'MBI17_g11083_MAGBIO' => 'mbi', 'MBI18_g03883_MAGBIO' => 'mbi', 'MBI18_g28940_MAGBIO' => 'mbi', 'MCO01G690' => 'mco', 'MD03G1109900' => 'mdo', 'MD03G1134800' => 'mdo', 'MD05G1348000' => 'mdo', 'MD10G1322400' => 'mdo', 'MD11G1123300' => 'mdo', 'MD11G1157600' => 'mdo', 'Medtr2g084875' => 'mtr', 'Medtr2g088130' => 'mtr', 'Medtr4g055310' => 'mtr', 'Medtr4g061070' => 'mtr', 'Medtr4g132250' => 'mtr', 'MELO3C004795.2' => 'cme', 'MELO3C004797.2' => 'cme', 'MELO3C007396.2' => 'cme', 'MELO3C019277.2' => 'cme', 'MELO3C021449.2' => 'cme', 'MELO3C025736.2' => 'cme', 'Migut.D02175' => 'egut', 'Migut.H01573' => 'egut', 'Migut.M01327' => 'egut', 'Migut.N02513' => 'egut', 'MSTRG.14638' => 'ama', 'MSTRG.18632' => 'ama', 'MSTRG.7203' => 'ama', 'Nitab4.5_0000533g0140' => 'nta', 'Nitab4.5_0000888g0150' => 'nta', 'Nitab4.5_0001453g0040' => 'nta', 'Nitab4.5_0002827g0090' => 'nta', 'Nitab4.5_0003082g0040' => 'nta', 'Nitab4.5_0007799g0040' => 'nta', 'Nitab4.5_0008983g0010' => 'nta', 'Nitab4.5_0009017g0020' => 'nta', 'Nn1g02132' => 'nnu', 'Nn1g03492' => 'nnu', 'Nn1g03493' => 'nnu', 'Nn1g03494' => 'nnu', 'Nn1g07164' => 'nnu', 'Nn1g07291' => 'nnu', 'Nn2g10655' => 'nnu', 'Nn2g11652' => 'nnu', 'Nn2g14008' => 'nnu', 'Nn3g17476' => 'nnu', 'Nn3g17477' => 'nnu', 'Nn4g22370' => 'nnu', 'Nn4g25255' => 'nnu', 'Nn5g27755' => 'nnu', 'Nn6g34260' => 'nnu', 'Nn6g35041' => 'nnu', 'Oeu005924.1' => 'oeu', 'Oeu008383.1' => 'oeu', 'Oeu014928.1' => 'oeu', 'Oeu019889.1' => 'oeu', 'Oeu022271.1' => 'oeu', 'Oeu025271.1' => 'oeu', 'Oeu036302.1' => 'oeu', 'Oeu044100.1' => 'oeu', 'Os01g0528300' => 'osa', 'Os03g0286200' => 'osa', 'Os04g0406600' => 'osa', 'Os07g0512000' => 'osa', 'Os07g0694600' => 'osa', 'Os08g0411000' => 'osa', 'Os09g0565700' => 'osa', 'Os09g0566050' => 'osa', 'Os10g0523700' => 'osa', 'Peaxi162Scf00002g00514' => 'pax', 'Peaxi162Scf00047g01817' => 'pax', 'Peaxi162Scf00114g00001' => 'pax', 'Peaxi162Scf00147g00613' => 'pax', 'Peaxi162Scf00389g00425' => 'pax', 'PGR042G1139' => 'pgr', 'PGR042G3273' => 'pgr', 'PGR102G2180' => 'pgr', 'PGR119G0234' => 'pgr', 'PGR119G0668' => 'pgr', 'PGSC0003DMG400007122' => 'stu', 'PGSC0003DMG400016478' => 'stu', 'PGSC0003DMG400025374' => 'stu', 'PGSC0003DMG400026536' => 'stu', 'Phvul.003G079600' => 'pvu', 'Phvul.005G115600' => 'pvu', 'Phvul.005G127100' => 'pvu', 'Phvul.006G149500' => 'pvu', 'Phvul.006G149600' => 'pvu', 'Phvul.011G071800' => 'pvu', 'Phvul.011G090400' => 'pvu', 'Potri.004G013400' => 'ptr', 'Potri.004G188100' => 'ptr', 'Potri.008G195500' => 'ptr', 'Potri.009G148800' => 'ptr', 'Potri.011G004700' => 'ptr', 'Pp3c17_22810' => 'ppa', 'Pp3c18_4480' => 'ppa', 'Pp3c19_13030' => 'ppa', 'Pp3c1_33620' => 'ppa', 'Pp3c2_9380' => 'ppa', 'PRCOL_00001023' => 'pco', 'Prupe.3G216300' => 'ppe', 'Prupe.4G019500' => 'ppe', 'Prupe.6G092500' => 'ppe', 'Prupe.6G119200' => 'ppe', 'Psat0s1945g0080' => 'psa', 'Psat0s4167g0040' => 'psa', 'Psat1g185800' => 'psa', 'Psat4g006440' => 'psa', 'Psat4g006480' => 'psa', 'Psat4g168120' => 'psa', 'Psat5g255680' => 'psa', 'Psat5g261760' => 'psa', 'Psat7g222120' => 'psa', 'PSO063G7252' => 'pso', 'PSO170G4778' => 'pso', 'PSO210G2249' => 'pso', 'PSO339G2411' => 'pso', 'PSO339G2457' => 'pso', 'PSO339G2854' => 'pso', 'PSO339G4288' => 'pso', 'PSO339G4615' => 'pso', 'PSO384G2796' => 'pso', 'PSO384G2940' => 'pso', 'PSO384G4227' => 'pso', 'PSO478G1425' => 'pso', 'PSO541G3863' => 'pso', 'PSO675G0507' => 'pso', 'PSO782G0338' => 'pso', 'PSO832G0644' => 'pso', 'QL01p013664' => 'qlo', 'QL01p036598' => 'qlo', 'QL05p072984' => 'qlo', 'QL08p005768' => 'qlo', 'QL08p032743' => 'qlo', 'QL93p0073_0439' => 'qlo', 'QL93p0073_0444' => 'qlo', 'RcHm_v2.0_Chr5g0002851' => 'rch', 'RcHm_v2.0_Chr5g0055201' => 'rch', 'RcHm_v2.0_Chr5g0061191' => 'rch', 'RcHm_v2.0_Chr7g0203231' => 'rch', 'Rhsim01G0208100' => 'rsi', 'Rhsim01G0208200' => 'rsi', 'Rhsim02G0106500' => 'rsi', 'Rhsim03G0107900' => 'rsi', 'Rhsim06G0163400' => 'rsi', 'Rhsim13G0105200' => 'rsi', 'Sabra04G0006300' => 'sbr', 'Sabra04G0127000' => 'sbr', 'Sabra08G0148700' => 'sbr', 'Sabra09G0117400' => 'sbr', 'SalBow1G3326' => 'sbo', 'SalBow3G3228' => 'sbo', 'SalBow6G1634' => 'sbo', 'SalBow6G3603' => 'sbo', 'SalBow6G5266' => 'sbo', 'SalBow7G2265' => 'sbo', 'SalBow8G0850' => 'sbo', 'SalBow8G2592' => 'sbo', 'Sc05g0009240' => 'sci', 'Sc12g0002300' => 'sci', 'Sc21g0000100' => 'sci', 'Sc21g0004720' => 'sci', 'Sed0002949' => 'sed', 'Sed0004114' => 'sed', 'Sed0004306' => 'sed', 'Sed0006172' => 'sed', 'Sed0008413' => 'sed', 'Sed0013809' => 'sed', 'Sed0019556' => 'sed', 'SEGI_03570' => 'sgi', 'SEGI_07859' => 'sgi', 'SEGI_15042' => 'sgi', 'SEGI_16263' => 'sgi', 'SEGI_16552' => 'sgi', 'SEGI_24331' => 'sgi', 'SEGI_27316' => 'sgi', 'SEGI_29521' => 'sgi', 'SEGI_41342' => 'sgi', 'SGA_v2.0_scaffold27G11617' => 'sas', 'SGA_v2.0_scaffold316G48428' => 'sas', 'SGA_v2.0_scaffold49G18261' => 'sas', 'SGA_v2.0_scaffold7G03831' => 'sas', 'SGA_v2.0_scaffold93G28359' => 'sas', 'SHI02210' => 'shi', 'SHI06028' => 'shi', 'SHI06321' => 'shi', 'SMO111G0012' => 'smo', 'SMO228G0080' => 'smo', 'SMO356G0756' => 'smo', 'Solyc02g080620.3' => 'sly', 'Solyc06g074530.1' => 'sly', 'Solyc11g066890.1' => 'sly', 'Solyc11g072520.3' => 'sly', 'Sopen02g025330' => 'spe', 'Sopen06g031000' => 'spe', 'Sopen09g008240' => 'spe', 'Sopen09g025210' => 'spe', 'Sopen11g026600' => 'spe', 'Sopen11g030170' => 'spe', 'Sp1g10420' => 'spa', 'Sp3g06570' => 'spa', 'Sp4g10660' => 'spa', 'Sp5g16460' => 'spa', 'Sp6g22710' => 'spa', 'TAR365G0112' => 'tar', 'TAR369G0717' => 'tar', 'TAR374G0976' => 'tar', 'TAR623G1128' => 'tar', 'TAR626G1937' => 'tar', 'TAR627G0123' => 'tar', 'TAR628G0305' => 'tar', 'TAR636G1176' => 'tar', 'TAR636G2442' => 'tar', 'THA.LOC104800556' => 'tha', 'THA.LOC104809501' => 'tha', 'THA.LOC104815126' => 'tha', 'THA.LOC104815732' => 'tha', 'THA.LOC104823528' => 'tha', 'Thecc.02G365600' => 'tca', 'Thecc.06G222300' => 'tca', 'Thecc.09G261800' => 'tca', 'Thecc.09G291400' => 'tca', 'Thhalv10003028m.g' => 'esa', 'Thhalv10007886m.g' => 'esa', 'Thhalv10016085m.g' => 'esa', 'Thhalv10016681m.g' => 'esa', 'Thhalv10020951m.g' => 'esa', 'TPR.G15598' => 'tpr', 'TPR.G29305' => 'tpr', 'TPR.G32395' => 'tpr', 'TPR.G36998' => 'tpr', 'TPR.G4227' => 'tpr', 'TWI18G1433' => 'twi', 'TWI31G0755' => 'twi', 'TWI38G0912' => 'twi', 'TWI75G1097' => 'twi', 'TWI75G1619' => 'twi', 'TWI79G1336' => 'twi', 'unitig_0.g943' => 'ugi', 'unitig_0.g944' => 'ugi', 'unitig_22.g6646' => 'ugi', 'unitig_37.g12681' => 'ugi', 'unitig_8.g3290' => 'ugi', 'vmacro03278' => 'vma', 'vmacro12197' => 'vma', 'vmacro14478' => 'vma', 'vmacro15787' => 'vma', 'vmacro15789' => 'vma', 'vmacro15790' => 'vma', 'vmacro15806' => 'vma', 'vmacro22907' => 'vma', 'vmacro22908' => 'vma', 'vmacro22909' => 'vma', 'vmacro23108' => 'vma', 'VMungo0540G0540' => 'vmu', 'VMungo0540G2468' => 'vmu', 'VMungo1080G0390' => 'vmu', 'VMungo1080G1165' => 'vmu', 'VMungo1127G0170' => 'vmu', 'VMungo1127G2099' => 'vmu', 'VMungo1215G3013' => 'vmu', 'Zm00001eb013110' => 'zma', 'Zm00001eb084260' => 'zma', 'Zm00001eb096110' => 'zma', 'Zm00001eb217510' => 'zma', 'Zm00001eb322550' => 'zma', 'Zm00001eb390770' => 'zma', 'Zm00001eb397170' => 'zma', 'Zm00001eb404610' => 'zma', 'Zm00001eb421790' => 'zma' ), 'gf_id' => 'HOM05D000911', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000911' ), 'data_identifier' => 'HOM05D000911', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000911', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27780' => 'bna', 'A03p35380' => 'bna', 'A04p21160' => 'bna', 'A05p40570' => 'bna', 'A06p26900' => 'bna', 'A08p33230' => 'bna', 'A09p65960' => 'bna', 'A10p18290' => 'bna', 'Aa31LG1G12990' => 'aar', 'Aa31LG1G2980' => 'aar', 'Aa31LG4G14320' => 'aar', 'Aa31LG7G11800' => 'aar', 'Aa31sc36G50' => 'aar', 'Aa31sc36G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3721' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5459' => 'aag', 'Actinidia03028' => 'ach', 'Actinidia03753' => 'ach', 'Actinidia04187' => 'ach', 'Actinidia05509' => 'ach', 'Actinidia24180' => 'ach', 'Actinidia26906' => 'ach', 'Actinidia37097' => 'ach', 'Actinidia38249' => 'ach', 'Ah.01g003470' => 'amhyb', 'Ah.01g004580' => 'amhyb', 'Ah.01g014850' => 'amhyb', 'Ah.01g016830' => 'amhyb', 'Ah.14g088000' => 'amhyb', 'AL1G22980' => 'aly', 'AL3G18990' => 'aly', 'AL4G22440' => 'aly', 'AL4G33180' => 'aly', 'AL5G22920' => 'aly', 'AL6G33660' => 'aly', 'AL8G20720' => 'aly', 'Aqoxy1G00935' => 'aox', 'Aqoxy1G02094' => 'aox', 'Aqoxy2G01239' => 'aox', 'Aqoxy4G01870' => 'aox', 'Aqoxy7G00450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.36ZVTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71EM27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5D6C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH3WRE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3NCM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RIM768' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YB5YRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z36GDV' => 'arhy', 'AT1G08250' => 'ath', 'AT1G11790' => 'ath', 'AT2G27820' => 'ath', 'AT3G07630' => 'ath', 'AT3G44720' => 'ath', 'AT5G22630' => 'ath', 'ATR0693G304' => 'atr', 'ATR0794G109' => 'atr', 'ATR0820G120' => 'atr', 'ATR1159G064' => 'atr', 'Atru.chr10.2239' => 'acertr', 'Atru.chr3.3371' => 'acertr', 'Atru.chr6.3202' => 'acertr', 'AUR62006499' => 'cqu', 'AUR62012718' => 'cqu', 'AUR62021938' => 'cqu', 'AUR62023932' => 'cqu', 'AUR62025034' => 'cqu', 'AUR62025035' => 'cqu', 'AUR62038307' => 'cqu', 'AUR62043466' => 'cqu', 'BcaB02g10748' => 'bca', 'BcaB03g13231' => 'bca', 'BcaB03g14689' => 'bca', 'BcaB05g22716' => 'bca', 'BcaB06g28172' => 'bca', 'BcaB08g36413' => 'bca', 'BcaC01g02186' => 'bca', 'BcaC01g04272' => 'bca', 'BcaC02g08080' => 'bca', 'BcaC02g08227' => 'bca', 'BcaC03g13901' => 'bca', 'BcaC04g19593' => 'bca', 'BcaC04g20874' => 'bca', 'BcaC05g29557' => 'bca', 'BcaC06g35505' => 'bca', 'BcaC07g41954' => 'bca', 'BcaC07g41955' => 'bca', 'BcaC07g41956' => 'bca', 'BcaC07g42519' => 'bca', 'BcaC07g42520' => 'bca', 'BcaC07g42523' => 'bca', 'BcaC07g42524' => 'bca', 'BcaC07g42525' => 'bca', 'BcaC08g47480' => 'bca', 'BcaC08g47481' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00530' => 'bna', 'BolC2t07178H' => 'bol', 'BolC3t16567H' => 'bol', 'BolC4t27234H' => 'bol', 'BolC5t29728H' => 'bol', 'BolC5t34622H' => 'bol', 'BolC6t40321H' => 'bol', 'BolC7t42028H' => 'bol', 'BolC8t49125H' => 'bol', 'BolC8t52538H' => 'bol', 'BolC8t52539H' => 'bol', 'BolC9t56681H' => 'bol', 'BolC9t58266H' => 'bol', 'BolSC21t60294H' => 'bol', 'BraA02t05670Z' => 'bra', 'BraA03t12716Z' => 'bra', 'BraA04t17685Z' => 'bra', 'BraA05t22788Z' => 'bra', 'BraA06t24032Z' => 'bra', 'BraA06t25625Z' => 'bra', 'BraA07t27930Z' => 'bra', 'BraA08t35242Z' => 'bra', 'BraA09t38609Z' => 'bra', 'BraA10t43905Z' => 'bra', 'C02p11060' => 'bna', 'C03p42990' => 'bna', 'C03p67310' => 'bna', 'C04p56990' => 'bna', 'C04p58660' => 'bna', 'C05p09890' => 'bna', 'C05p59680' => 'bna', 'C06p19830' => 'bna', 'C06p53040' => 'bna', 'C07p15230' => 'bna', 'C08p50070' => 'bna', 'C08p50090' => 'bna', 'C09p38330' => 'bna', 'C09p53940' => 'bna', 'CAN.G1014.1' => 'can', 'CAN.G644.30' => 'can', 'CAN.G84.47' => 'can', 'CAN.G919.8' => 'can', 'CANSAT54G0113' => 'cansat', 'CANSAT54G1286' => 'cansat', 'CANSAT64G1020' => 'cansat', 'CARHR008080' => 'chi', 'CARHR008090' => 'chi', 'CARHR012130' => 'chi', 'CARHR038390' => 'chi', 'CARHR082330' => 'chi', 'CARHR120520' => 'chi', 'CARHR151470' => 'chi', 'CARHR190950' => 'chi', 'Carub.0001s0760' => 'cru', 'Carub.0001s1146' => 'cru', 'Carub.0003s0721' => 'cru', 'Carub.0004s0858' => 'cru', 'Carub.0005s1040' => 'cru', 'Carub.0006s2035' => 'cru', 'Carub.0015s0005' => 'cru', 'Ca_01607_v3' => 'car', 'Ca_01677_v3' => 'car', 'Ca_06087_v3' => 'car', 'Ca_19238_v3' => 'car', 'Ca_19373_v3' => 'car', 'Ca_21079_v3' => 'car', 'CBR_g54016' => 'cbr', 'CBR_g54018' => 'cbr', 'CBR_g54020' => 'cbr', 'Cc01_g09780' => 'ccan', 'Cc01_g11680' => 'ccan', 'Cc02_g15610' => 'ccan', 'Cc05_g04350' => 'ccan', 'Cc09_g01580' => 'ccan', 'CDE01G0795' => 'cde', 'CDE02G2024' => 'cde', 'CDE02G2260' => 'cde', 'CDE02G4561' => 'cde', 'CDE05G2733' => 'cde', 'CDE05G3422' => 'cde', 'CDE06G2003' => 'cde', 'CDE08G0576' => 'cde', 'CDE09G0048' => 'cde', 'CDE11G0805' => 'cde', 'Cfa003644' => 'cfa', 'Cfa006290' => 'cfa', 'Cfa010080' => 'cfa', 'Cfa011376' => 'cfa', 'Cfa011576' => 'cfa', 'Cfa011577' => 'cfa', 'Cfa014389' => 'cfa', 'Ciclev10006044m.g' => 'ccl', 'Ciclev10006954m.g' => 'ccl', 'Ciclev10015131m.g' => 'ccl', 'Ciclev10015580m.g' => 'ccl', 'Ciclev10028359m.g' => 'ccl', 'Ciclev10028573m.g' => 'ccl', 'CiPaw.03G159300' => 'cil', 'CiPaw.04G115100' => 'cil', 'CiPaw.09G092800' => 'cil', 'CiPaw.10G071800' => 'cil', 'CiPaw.13G105800' => 'cil', 'CiPaw.13G141000' => 'cil', 'CiPaw.14G103400' => 'cil', 'ClCG01G012700' => 'cla', 'ClCG01G012720' => 'cla', 'ClCG01G021920' => 'cla', 'ClCG02G008870' => 'cla', 'ClCG02G020840' => 'cla', 'ClCG02G021930' => 'cla', 'COL.COLO4_19302' => 'col', 'COL.COLO4_25262' => 'col', 'COL.COLO4_31788' => 'col', 'Cpa.g.c34684' => 'cpa', 'Cpa.g.c36520.1' => 'cpa', 'Cpa.g.c45626' => 'cpa', 'Cpa.g.sc121.17' => 'cpa', 'Cpa.g.sc13.22' => 'cpa', 'Cpa.g.sc87.88' => 'cpa', 'Cre06.g261800' => 'cre', 'CsaV3_1G014500' => 'csa', 'CsaV3_1G014510' => 'csa', 'CsaV3_2G034880' => 'csa', 'CsaV3_6G014760' => 'csa', 'CsaV3_6G021500' => 'csa', 'CsaV3_6G048980' => 'csa', 'CSS0002511' => 'camsi', 'CSS0007556' => 'camsi', 'CSS0008532' => 'camsi', 'CSS0009709' => 'camsi', 'CSS0010486' => 'camsi', 'CSS0016768' => 'camsi', 'CSS0023512' => 'camsi', 'CSS0025341' => 'camsi', 'CSS0027999' => 'camsi', 'CSS0028944' => 'camsi', 'CSS0032292' => 'camsi', 'CSS0032464' => 'camsi', 'CSS0037153' => 'camsi', 'CSS0039256' => 'camsi', 'CSS0048392' => 'camsi', 'CSS0050458' => 'camsi', 'DCAR_004224' => 'dca', 'DCAR_006147' => 'dca', 'DCAR_006465' => 'dca', 'DCAR_008159' => 'dca', 'DCAR_012164' => 'dca', 'DCAR_019764' => 'dca', 'Dinv05418' => 'din', 'Dinv10839' => 'din', 'Dinv12521' => 'din', 'Dinv13900' => 'din', 'Dinv29426' => 'din', 'Duzib150G0263' => 'dzi', 'Duzib168G1178' => 'dzi', 'Duzib168G1924' => 'dzi', 'Duzib170G0299' => 'dzi', 'Duzib170G0813' => 'dzi', 'Duzib235G1128' => 'dzi', 'Duzib248G1060' => 'dzi', 'ECA232G1910' => 'eca', 'ECA233G4621' => 'eca', 'ECA238G1216' => 'eca', 'ECA238G1784' => 'eca', 'ECA248G1242' => 'eca', 'EL10Ac8g20071' => 'bvu', 'EL10Ac9g21086' => 'bvu', 'EL10Ac9g22407' => 'bvu', 'EL10Ac9g22412' => 'bvu', 'Eucgr.A01119' => 'egr', 'Eucgr.E04043' => 'egr', 'Eucgr.J00428' => 'egr', 'Eucgr.J00958' => 'egr', 'FAN11G3091' => 'fan', 'FAN11G3651' => 'fan', 'FAN16G2566' => 'fan', 'FAN21G3155' => 'fan', 'FAN21G3400' => 'fan', 'FAN21G3543' => 'fan', 'FAN25G0234' => 'fan', 'FAN25G1422' => 'fan', 'FAN25G3392' => 'fan', 'FvH4_3g01940' => 'fve', 'FvH4_3g29870' => 'fve', 'FvH4_3g33680' => 'fve', 'Glyma.09G004200' => 'gma', 'Glyma.11G151288' => 'gma', 'Glyma.11G189100' => 'gma', 'Glyma.12G072500' => 'gma', 'Glyma.12G085500' => 'gma', 'Glyma.12G181800' => 'gma', 'Glyma.12G193000' => 'gma', 'Glyma.13G309300' => 'gma', 'Glyma.13G319000' => 'gma', 'Glyma.17G012600' => 'gma', 'Gohir.A06G148600' => 'ghi', 'Gohir.A07G115800' => 'ghi', 'Gohir.A08G003600' => 'ghi', 'Gohir.A09G093300' => 'ghi', 'Gohir.A09G105400' => 'ghi', 'Gohir.A09G105500' => 'ghi', 'Gohir.D06G154600' => 'ghi', 'Gohir.D07G120200' => 'ghi', 'Gohir.D08G013900' => 'ghi', 'Gohir.D09G093100' => 'ghi', 'Gohir.D09G102200' => 'ghi', 'Gohir.D09G102300' => 'ghi', 'Gorai.001G129400' => 'gra', 'Gorai.004G008200' => 'gra', 'Gorai.006G109800' => 'gra', 'Gorai.006G119500' => 'gra', 'Gorai.006G121300' => 'gra', 'Gorai.010G180700' => 'gra', 'GSVIVG01012716001' => 'vvi', 'GSVIVG01025118001' => 'vvi', 'GSVIVG01030439001' => 'vvi', 'GSVIVG01031397001' => 'vvi', 'HanXRQChr01g0004201' => 'han', 'HanXRQChr02g0054941' => 'han', 'HanXRQChr05g0141811' => 'han', 'HanXRQChr07g0197751' => 'han', 'HanXRQChr11g0346691' => 'han', 'HanXRQChr13g0396971' => 'han', 'HanXRQChr14g0432951' => 'han', 'HanXRQChr14g0452001' => 'han', 'HanXRQChr15g0496681' => 'han', 'HanXRQChr17g0557491' => 'han', 'HanXRQChr17g0557501' => 'han', 'Haze_06809' => 'cav', 'Haze_12852' => 'cav', 'Haze_15850' => 'cav', 'Haze_23446' => 'cav', 'Haze_23942' => 'cav', 'Haze_23943' => 'cav', 'Hma1.2p1_0091F.1_g046450' => 'hma', 'Hma1.2p1_0128F.1_g059910' => 'hma', 'Hma1.2p1_0249F.1_g102260' => 'hma', 'Hma1.2p1_0453F.1_g156190' => 'hma', 'Hma1.2p1_0695F.1_g204380' => 'hma', 'Hma1.2p1_0749F.1_g212650' => 'hma', 'Hma1.2p1_2156F.1_g315420' => 'hma', 'Hma1.2p1_2686F.1_g326940' => 'hma', 'HPP92_006428' => 'vpl', 'HPP92_012069' => 'vpl', 'HPP92_014129' => 'vpl', 'HPP92_014133' => 'vpl', 'HPP92_017315' => 'vpl', 'HPP92_026445' => 'vpl', 'HPP92_026446' => 'vpl', 'Hund00774' => 'sun', 'Hund07682' => 'sun', 'Hund21413' => 'sun', 'Hund23462' => 'sun', 'Hund23463' => 'sun', 'Lalb_Chr03g0027911' => 'lal', 'Lalb_Chr13g0304271' => 'lal', 'Lalb_Chr19g0137471' => 'lal', 'Lalb_Chr22g0350651' => 'lal', 'Lalb_Chr24g0395151' => 'lal', 'Lj1A1231T40' => 'lonja', 'Lj1A221T48' => 'lonja', 'Lj1C924T12' => 'lonja', 'Lj2C993G6' => 'lonja', 'Lj3g0005790' => 'lja', 'Lj3g0015432' => 'lja', 'Lj3g0017722' => 'lja', 'Lj3g0018497' => 'lja', 'Lj4g0025071' => 'lja', 'Lsat_1_v5_gn_1_129680' => 'lsa', 'Lsat_1_v5_gn_2_25321' => 'lsa', 'Lsat_1_v5_gn_2_95461' => 'lsa', 'Lsat_1_v5_gn_4_159620' => 'lsa', 'Lsat_1_v5_gn_6_41301' => 'lsa', 'Lsat_1_v5_gn_6_74660' => 'lsa', 'Lsat_1_v5_gn_7_11520' => 'lsa', 'Lsat_1_v5_gn_9_67680' => 'lsa', 'Manes.04G008300' => 'mes', 'Manes.04G008400' => 'mes', 'Manes.04G026500' => 'mes', 'Manes.10G135300' => 'mes', 'Manes.11G157300' => 'mes', 'Manes.12G074000' => 'mes', 'Manes.16G006200' => 'mes', 'Manes.17G026400' => 'mes', 'Mapoly0024s0086' => 'mpo', 'Mapoly0024s0087' => 'mpo', 'Mapoly0071s0057' => 'mpo', 'Mapoly0204s0012' => 'mpo', 'MBI04_g37681_MAGBIO' => 'mbi', 'MBI05_g17779_MAGBIO' => 'mbi', 'MBI12_g31184_MAGBIO' => 'mbi', 'MBI17_g11083_MAGBIO' => 'mbi', 'MBI18_g03883_MAGBIO' => 'mbi', 'MBI18_g28940_MAGBIO' => 'mbi', 'MCO01G690' => 'mco', 'MD03G1109900' => 'mdo', 'MD03G1134800' => 'mdo', 'MD05G1348000' => 'mdo', 'MD10G1322400' => 'mdo', 'MD11G1123300' => 'mdo', 'MD11G1157600' => 'mdo', 'Medtr2g084875' => 'mtr', 'Medtr2g088130' => 'mtr', 'Medtr4g055310' => 'mtr', 'Medtr4g061070' => 'mtr', 'Medtr4g132250' => 'mtr', 'MELO3C004795.2' => 'cme', 'MELO3C004797.2' => 'cme', 'MELO3C007396.2' => 'cme', 'MELO3C019277.2' => 'cme', 'MELO3C021449.2' => 'cme', 'MELO3C025736.2' => 'cme', 'Migut.D02175' => 'egut', 'Migut.H01573' => 'egut', 'Migut.M01327' => 'egut', 'Migut.N02513' => 'egut', 'MSTRG.14638' => 'ama', 'MSTRG.18632' => 'ama', 'MSTRG.7203' => 'ama', 'Nitab4.5_0000533g0140' => 'nta', 'Nitab4.5_0000888g0150' => 'nta', 'Nitab4.5_0001453g0040' => 'nta', 'Nitab4.5_0002827g0090' => 'nta', 'Nitab4.5_0003082g0040' => 'nta', 'Nitab4.5_0007799g0040' => 'nta', 'Nitab4.5_0008983g0010' => 'nta', 'Nitab4.5_0009017g0020' => 'nta', 'Nn1g02132' => 'nnu', 'Nn1g03492' => 'nnu', 'Nn1g03493' => 'nnu', 'Nn1g03494' => 'nnu', 'Nn1g07164' => 'nnu', 'Nn1g07291' => 'nnu', 'Nn2g10655' => 'nnu', 'Nn2g11652' => 'nnu', 'Nn2g14008' => 'nnu', 'Nn3g17476' => 'nnu', 'Nn3g17477' => 'nnu', 'Nn4g22370' => 'nnu', 'Nn4g25255' => 'nnu', 'Nn5g27755' => 'nnu', 'Nn6g34260' => 'nnu', 'Nn6g35041' => 'nnu', 'Oeu005924.1' => 'oeu', 'Oeu008383.1' => 'oeu', 'Oeu014928.1' => 'oeu', 'Oeu019889.1' => 'oeu', 'Oeu022271.1' => 'oeu', 'Oeu025271.1' => 'oeu', 'Oeu036302.1' => 'oeu', 'Oeu044100.1' => 'oeu', 'Os01g0528300' => 'osa', 'Os03g0286200' => 'osa', 'Os04g0406600' => 'osa', 'Os07g0512000' => 'osa', 'Os07g0694600' => 'osa', 'Os08g0411000' => 'osa', 'Os09g0565700' => 'osa', 'Os09g0566050' => 'osa', 'Os10g0523700' => 'osa', 'Peaxi162Scf00002g00514' => 'pax', 'Peaxi162Scf00047g01817' => 'pax', 'Peaxi162Scf00114g00001' => 'pax', 'Peaxi162Scf00147g00613' => 'pax', 'Peaxi162Scf00389g00425' => 'pax', 'PGR042G1139' => 'pgr', 'PGR042G3273' => 'pgr', 'PGR102G2180' => 'pgr', 'PGR119G0234' => 'pgr', 'PGR119G0668' => 'pgr', 'PGSC0003DMG400007122' => 'stu', 'PGSC0003DMG400016478' => 'stu', 'PGSC0003DMG400025374' => 'stu', 'PGSC0003DMG400026536' => 'stu', 'Phvul.003G079600' => 'pvu', 'Phvul.005G115600' => 'pvu', 'Phvul.005G127100' => 'pvu', 'Phvul.006G149500' => 'pvu', 'Phvul.006G149600' => 'pvu', 'Phvul.011G071800' => 'pvu', 'Phvul.011G090400' => 'pvu', 'Potri.004G013400' => 'ptr', 'Potri.004G188100' => 'ptr', 'Potri.008G195500' => 'ptr', 'Potri.009G148800' => 'ptr', 'Potri.011G004700' => 'ptr', 'Pp3c17_22810' => 'ppa', 'Pp3c18_4480' => 'ppa', 'Pp3c19_13030' => 'ppa', 'Pp3c1_33620' => 'ppa', 'Pp3c2_9380' => 'ppa', 'PRCOL_00001023' => 'pco', 'Prupe.3G216300' => 'ppe', 'Prupe.4G019500' => 'ppe', 'Prupe.6G092500' => 'ppe', 'Prupe.6G119200' => 'ppe', 'Psat0s1945g0080' => 'psa', 'Psat0s4167g0040' => 'psa', 'Psat1g185800' => 'psa', 'Psat4g006440' => 'psa', 'Psat4g006480' => 'psa', 'Psat4g168120' => 'psa', 'Psat5g255680' => 'psa', 'Psat5g261760' => 'psa', 'Psat7g222120' => 'psa', 'PSO063G7252' => 'pso', 'PSO170G4778' => 'pso', 'PSO210G2249' => 'pso', 'PSO339G2411' => 'pso', 'PSO339G2457' => 'pso', 'PSO339G2854' => 'pso', 'PSO339G4288' => 'pso', 'PSO339G4615' => 'pso', 'PSO384G2796' => 'pso', 'PSO384G2940' => 'pso', 'PSO384G4227' => 'pso', 'PSO478G1425' => 'pso', 'PSO541G3863' => 'pso', 'PSO675G0507' => 'pso', 'PSO782G0338' => 'pso', 'PSO832G0644' => 'pso', 'QL01p013664' => 'qlo', 'QL01p036598' => 'qlo', 'QL05p072984' => 'qlo', 'QL08p005768' => 'qlo', 'QL08p032743' => 'qlo', 'QL93p0073_0439' => 'qlo', 'QL93p0073_0444' => 'qlo', 'RcHm_v2.0_Chr5g0002851' => 'rch', 'RcHm_v2.0_Chr5g0055201' => 'rch', 'RcHm_v2.0_Chr5g0061191' => 'rch', 'RcHm_v2.0_Chr7g0203231' => 'rch', 'Rhsim01G0208100' => 'rsi', 'Rhsim01G0208200' => 'rsi', 'Rhsim02G0106500' => 'rsi', 'Rhsim03G0107900' => 'rsi', 'Rhsim06G0163400' => 'rsi', 'Rhsim13G0105200' => 'rsi', 'Sabra04G0006300' => 'sbr', 'Sabra04G0127000' => 'sbr', 'Sabra08G0148700' => 'sbr', 'Sabra09G0117400' => 'sbr', 'SalBow1G3326' => 'sbo', 'SalBow3G3228' => 'sbo', 'SalBow6G1634' => 'sbo', 'SalBow6G3603' => 'sbo', 'SalBow6G5266' => 'sbo', 'SalBow7G2265' => 'sbo', 'SalBow8G0850' => 'sbo', 'SalBow8G2592' => 'sbo', 'Sc05g0009240' => 'sci', 'Sc12g0002300' => 'sci', 'Sc21g0000100' => 'sci', 'Sc21g0004720' => 'sci', 'Sed0002949' => 'sed', 'Sed0004114' => 'sed', 'Sed0004306' => 'sed', 'Sed0006172' => 'sed', 'Sed0008413' => 'sed', 'Sed0013809' => 'sed', 'Sed0019556' => 'sed', 'SEGI_03570' => 'sgi', 'SEGI_07859' => 'sgi', 'SEGI_15042' => 'sgi', 'SEGI_16263' => 'sgi', 'SEGI_16552' => 'sgi', 'SEGI_24331' => 'sgi', 'SEGI_27316' => 'sgi', 'SEGI_29521' => 'sgi', 'SEGI_41342' => 'sgi', 'SGA_v2.0_scaffold27G11617' => 'sas', 'SGA_v2.0_scaffold316G48428' => 'sas', 'SGA_v2.0_scaffold49G18261' => 'sas', 'SGA_v2.0_scaffold7G03831' => 'sas', 'SGA_v2.0_scaffold93G28359' => 'sas', 'SHI02210' => 'shi', 'SHI06028' => 'shi', 'SHI06321' => 'shi', 'SMO111G0012' => 'smo', 'SMO228G0080' => 'smo', 'SMO356G0756' => 'smo', 'Solyc02g080620.3' => 'sly', 'Solyc06g074530.1' => 'sly', 'Solyc11g066890.1' => 'sly', 'Solyc11g072520.3' => 'sly', 'Sopen02g025330' => 'spe', 'Sopen06g031000' => 'spe', 'Sopen09g008240' => 'spe', 'Sopen09g025210' => 'spe', 'Sopen11g026600' => 'spe', 'Sopen11g030170' => 'spe', 'Sp1g10420' => 'spa', 'Sp3g06570' => 'spa', 'Sp4g10660' => 'spa', 'Sp5g16460' => 'spa', 'Sp6g22710' => 'spa', 'TAR365G0112' => 'tar', 'TAR369G0717' => 'tar', 'TAR374G0976' => 'tar', 'TAR623G1128' => 'tar', 'TAR626G1937' => 'tar', 'TAR627G0123' => 'tar', 'TAR628G0305' => 'tar', 'TAR636G1176' => 'tar', 'TAR636G2442' => 'tar', 'THA.LOC104800556' => 'tha', 'THA.LOC104809501' => 'tha', 'THA.LOC104815126' => 'tha', 'THA.LOC104815732' => 'tha', 'THA.LOC104823528' => 'tha', 'Thecc.02G365600' => 'tca', 'Thecc.06G222300' => 'tca', 'Thecc.09G261800' => 'tca', 'Thecc.09G291400' => 'tca', 'Thhalv10003028m.g' => 'esa', 'Thhalv10007886m.g' => 'esa', 'Thhalv10016085m.g' => 'esa', 'Thhalv10016681m.g' => 'esa', 'Thhalv10020951m.g' => 'esa', 'TPR.G15598' => 'tpr', 'TPR.G29305' => 'tpr', 'TPR.G32395' => 'tpr', 'TPR.G36998' => 'tpr', 'TPR.G4227' => 'tpr', 'TWI18G1433' => 'twi', 'TWI31G0755' => 'twi', 'TWI38G0912' => 'twi', 'TWI75G1097' => 'twi', 'TWI75G1619' => 'twi', 'TWI79G1336' => 'twi', 'unitig_0.g943' => 'ugi', 'unitig_0.g944' => 'ugi', 'unitig_22.g6646' => 'ugi', 'unitig_37.g12681' => 'ugi', 'unitig_8.g3290' => 'ugi', 'vmacro03278' => 'vma', 'vmacro12197' => 'vma', 'vmacro14478' => 'vma', 'vmacro15787' => 'vma', 'vmacro15789' => 'vma', 'vmacro15790' => 'vma', 'vmacro15806' => 'vma', 'vmacro22907' => 'vma', 'vmacro22908' => 'vma', 'vmacro22909' => 'vma', 'vmacro23108' => 'vma', 'VMungo0540G0540' => 'vmu', 'VMungo0540G2468' => 'vmu', 'VMungo1080G0390' => 'vmu', 'VMungo1080G1165' => 'vmu', 'VMungo1127G0170' => 'vmu', 'VMungo1127G2099' => 'vmu', 'VMungo1215G3013' => 'vmu', 'Zm00001eb013110' => 'zma', 'Zm00001eb084260' => 'zma', 'Zm00001eb096110' => 'zma', 'Zm00001eb217510' => 'zma', 'Zm00001eb322550' => 'zma', 'Zm00001eb390770' => 'zma', 'Zm00001eb397170' => 'zma', 'Zm00001eb404610' => 'zma', 'Zm00001eb421790' => 'zma' ) $gf_id = 'HOM05D000911' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000911' ) $data_identifier = 'HOM05D000911' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 16, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 5, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 6, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 8, 'nnu' => (int) 16, 'oeu' => (int) 8, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 5, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 16, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421790' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000911', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27780' => 'bna', 'A03p35380' => 'bna', 'A04p21160' => 'bna', 'A05p40570' => 'bna', 'A06p26900' => 'bna', 'A08p33230' => 'bna', 'A09p65960' => 'bna', 'A10p18290' => 'bna', 'Aa31LG1G12990' => 'aar', 'Aa31LG1G2980' => 'aar', 'Aa31LG4G14320' => 'aar', 'Aa31LG7G11800' => 'aar', 'Aa31sc36G50' => 'aar', 'Aa31sc36G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3721' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5459' => 'aag', 'Actinidia03028' => 'ach', 'Actinidia03753' => 'ach', 'Actinidia04187' => 'ach', 'Actinidia05509' => 'ach', 'Actinidia24180' => 'ach', 'Actinidia26906' => 'ach', 'Actinidia37097' => 'ach', 'Actinidia38249' => 'ach', 'Ah.01g003470' => 'amhyb', 'Ah.01g004580' => 'amhyb', 'Ah.01g014850' => 'amhyb', 'Ah.01g016830' => 'amhyb', 'Ah.14g088000' => 'amhyb', 'AL1G22980' => 'aly', 'AL3G18990' => 'aly', 'AL4G22440' => 'aly', 'AL4G33180' => 'aly', 'AL5G22920' => 'aly', 'AL6G33660' => 'aly', 'AL8G20720' => 'aly', 'Aqoxy1G00935' => 'aox', 'Aqoxy1G02094' => 'aox', 'Aqoxy2G01239' => 'aox', 'Aqoxy4G01870' => 'aox', 'Aqoxy7G00450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.36ZVTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71EM27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5D6C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH3WRE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3NCM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RIM768' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YB5YRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z36GDV' => 'arhy', 'AT1G08250' => 'ath', 'AT1G11790' => 'ath', 'AT2G27820' => 'ath', 'AT3G07630' => 'ath', 'AT3G44720' => 'ath', 'AT5G22630' => 'ath', 'ATR0693G304' => 'atr', 'ATR0794G109' => 'atr', 'ATR0820G120' => 'atr', 'ATR1159G064' => 'atr', 'Atru.chr10.2239' => 'acertr', 'Atru.chr3.3371' => 'acertr', 'Atru.chr6.3202' => 'acertr', 'AUR62006499' => 'cqu', 'AUR62012718' => 'cqu', 'AUR62021938' => 'cqu', 'AUR62023932' => 'cqu', 'AUR62025034' => 'cqu', 'AUR62025035' => 'cqu', 'AUR62038307' => 'cqu', 'AUR62043466' => 'cqu', 'BcaB02g10748' => 'bca', 'BcaB03g13231' => 'bca', 'BcaB03g14689' => 'bca', 'BcaB05g22716' => 'bca', 'BcaB06g28172' => 'bca', 'BcaB08g36413' => 'bca', 'BcaC01g02186' => 'bca', 'BcaC01g04272' => 'bca', 'BcaC02g08080' => 'bca', 'BcaC02g08227' => 'bca', 'BcaC03g13901' => 'bca', 'BcaC04g19593' => 'bca', 'BcaC04g20874' => 'bca', 'BcaC05g29557' => 'bca', 'BcaC06g35505' => 'bca', 'BcaC07g41954' => 'bca', 'BcaC07g41955' => 'bca', 'BcaC07g41956' => 'bca', 'BcaC07g42519' => 'bca', 'BcaC07g42520' => 'bca', 'BcaC07g42523' => 'bca', 'BcaC07g42524' => 'bca', 'BcaC07g42525' => 'bca', 'BcaC08g47480' => 'bca', 'BcaC08g47481' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00530' => 'bna', 'BolC2t07178H' => 'bol', 'BolC3t16567H' => 'bol', 'BolC4t27234H' => 'bol', 'BolC5t29728H' => 'bol', 'BolC5t34622H' => 'bol', 'BolC6t40321H' => 'bol', 'BolC7t42028H' => 'bol', 'BolC8t49125H' => 'bol', 'BolC8t52538H' => 'bol', 'BolC8t52539H' => 'bol', 'BolC9t56681H' => 'bol', 'BolC9t58266H' => 'bol', 'BolSC21t60294H' => 'bol', 'BraA02t05670Z' => 'bra', 'BraA03t12716Z' => 'bra', 'BraA04t17685Z' => 'bra', 'BraA05t22788Z' => 'bra', 'BraA06t24032Z' => 'bra', 'BraA06t25625Z' => 'bra', 'BraA07t27930Z' => 'bra', 'BraA08t35242Z' => 'bra', 'BraA09t38609Z' => 'bra', 'BraA10t43905Z' => 'bra', 'C02p11060' => 'bna', 'C03p42990' => 'bna', 'C03p67310' => 'bna', 'C04p56990' => 'bna', 'C04p58660' => 'bna', 'C05p09890' => 'bna', 'C05p59680' => 'bna', 'C06p19830' => 'bna', 'C06p53040' => 'bna', 'C07p15230' => 'bna', 'C08p50070' => 'bna', 'C08p50090' => 'bna', 'C09p38330' => 'bna', 'C09p53940' => 'bna', 'CAN.G1014.1' => 'can', 'CAN.G644.30' => 'can', 'CAN.G84.47' => 'can', 'CAN.G919.8' => 'can', 'CANSAT54G0113' => 'cansat', 'CANSAT54G1286' => 'cansat', 'CANSAT64G1020' => 'cansat', 'CARHR008080' => 'chi', 'CARHR008090' => 'chi', 'CARHR012130' => 'chi', 'CARHR038390' => 'chi', 'CARHR082330' => 'chi', 'CARHR120520' => 'chi', 'CARHR151470' => 'chi', 'CARHR190950' => 'chi', 'Carub.0001s0760' => 'cru', 'Carub.0001s1146' => 'cru', 'Carub.0003s0721' => 'cru', 'Carub.0004s0858' => 'cru', 'Carub.0005s1040' => 'cru', 'Carub.0006s2035' => 'cru', 'Carub.0015s0005' => 'cru', 'Ca_01607_v3' => 'car', 'Ca_01677_v3' => 'car', 'Ca_06087_v3' => 'car', 'Ca_19238_v3' => 'car', 'Ca_19373_v3' => 'car', 'Ca_21079_v3' => 'car', 'CBR_g54016' => 'cbr', 'CBR_g54018' => 'cbr', 'CBR_g54020' => 'cbr', 'Cc01_g09780' => 'ccan', 'Cc01_g11680' => 'ccan', 'Cc02_g15610' => 'ccan', 'Cc05_g04350' => 'ccan', 'Cc09_g01580' => 'ccan', 'CDE01G0795' => 'cde', 'CDE02G2024' => 'cde', 'CDE02G2260' => 'cde', 'CDE02G4561' => 'cde', 'CDE05G2733' => 'cde', 'CDE05G3422' => 'cde', 'CDE06G2003' => 'cde', 'CDE08G0576' => 'cde', 'CDE09G0048' => 'cde', 'CDE11G0805' => 'cde', 'Cfa003644' => 'cfa', 'Cfa006290' => 'cfa', 'Cfa010080' => 'cfa', 'Cfa011376' => 'cfa', 'Cfa011576' => 'cfa', 'Cfa011577' => 'cfa', 'Cfa014389' => 'cfa', 'Ciclev10006044m.g' => 'ccl', 'Ciclev10006954m.g' => 'ccl', 'Ciclev10015131m.g' => 'ccl', 'Ciclev10015580m.g' => 'ccl', 'Ciclev10028359m.g' => 'ccl', 'Ciclev10028573m.g' => 'ccl', 'CiPaw.03G159300' => 'cil', 'CiPaw.04G115100' => 'cil', 'CiPaw.09G092800' => 'cil', 'CiPaw.10G071800' => 'cil', 'CiPaw.13G105800' => 'cil', 'CiPaw.13G141000' => 'cil', 'CiPaw.14G103400' => 'cil', 'ClCG01G012700' => 'cla', 'ClCG01G012720' => 'cla', 'ClCG01G021920' => 'cla', 'ClCG02G008870' => 'cla', 'ClCG02G020840' => 'cla', 'ClCG02G021930' => 'cla', 'COL.COLO4_19302' => 'col', 'COL.COLO4_25262' => 'col', 'COL.COLO4_31788' => 'col', 'Cpa.g.c34684' => 'cpa', 'Cpa.g.c36520.1' => 'cpa', 'Cpa.g.c45626' => 'cpa', 'Cpa.g.sc121.17' => 'cpa', 'Cpa.g.sc13.22' => 'cpa', 'Cpa.g.sc87.88' => 'cpa', 'Cre06.g261800' => 'cre', 'CsaV3_1G014500' => 'csa', 'CsaV3_1G014510' => 'csa', 'CsaV3_2G034880' => 'csa', 'CsaV3_6G014760' => 'csa', 'CsaV3_6G021500' => 'csa', 'CsaV3_6G048980' => 'csa', 'CSS0002511' => 'camsi', 'CSS0007556' => 'camsi', 'CSS0008532' => 'camsi', 'CSS0009709' => 'camsi', 'CSS0010486' => 'camsi', 'CSS0016768' => 'camsi', 'CSS0023512' => 'camsi', 'CSS0025341' => 'camsi', 'CSS0027999' => 'camsi', 'CSS0028944' => 'camsi', 'CSS0032292' => 'camsi', 'CSS0032464' => 'camsi', 'CSS0037153' => 'camsi', 'CSS0039256' => 'camsi', 'CSS0048392' => 'camsi', 'CSS0050458' => 'camsi', 'DCAR_004224' => 'dca', 'DCAR_006147' => 'dca', 'DCAR_006465' => 'dca', 'DCAR_008159' => 'dca', 'DCAR_012164' => 'dca', 'DCAR_019764' => 'dca', 'Dinv05418' => 'din', 'Dinv10839' => 'din', 'Dinv12521' => 'din', 'Dinv13900' => 'din', 'Dinv29426' => 'din', 'Duzib150G0263' => 'dzi', 'Duzib168G1178' => 'dzi', 'Duzib168G1924' => 'dzi', 'Duzib170G0299' => 'dzi', 'Duzib170G0813' => 'dzi', 'Duzib235G1128' => 'dzi', 'Duzib248G1060' => 'dzi', 'ECA232G1910' => 'eca', 'ECA233G4621' => 'eca', 'ECA238G1216' => 'eca', 'ECA238G1784' => 'eca', 'ECA248G1242' => 'eca', 'EL10Ac8g20071' => 'bvu', 'EL10Ac9g21086' => 'bvu', 'EL10Ac9g22407' => 'bvu', 'EL10Ac9g22412' => 'bvu', 'Eucgr.A01119' => 'egr', 'Eucgr.E04043' => 'egr', 'Eucgr.J00428' => 'egr', 'Eucgr.J00958' => 'egr', 'FAN11G3091' => 'fan', 'FAN11G3651' => 'fan', 'FAN16G2566' => 'fan', 'FAN21G3155' => 'fan', 'FAN21G3400' => 'fan', 'FAN21G3543' => 'fan', 'FAN25G0234' => 'fan', 'FAN25G1422' => 'fan', 'FAN25G3392' => 'fan', 'FvH4_3g01940' => 'fve', 'FvH4_3g29870' => 'fve', 'FvH4_3g33680' => 'fve', 'Glyma.09G004200' => 'gma', 'Glyma.11G151288' => 'gma', 'Glyma.11G189100' => 'gma', 'Glyma.12G072500' => 'gma', 'Glyma.12G085500' => 'gma', 'Glyma.12G181800' => 'gma', 'Glyma.12G193000' => 'gma', 'Glyma.13G309300' => 'gma', 'Glyma.13G319000' => 'gma', 'Glyma.17G012600' => 'gma', 'Gohir.A06G148600' => 'ghi', 'Gohir.A07G115800' => 'ghi', 'Gohir.A08G003600' => 'ghi', 'Gohir.A09G093300' => 'ghi', 'Gohir.A09G105400' => 'ghi', 'Gohir.A09G105500' => 'ghi', 'Gohir.D06G154600' => 'ghi', 'Gohir.D07G120200' => 'ghi', 'Gohir.D08G013900' => 'ghi', 'Gohir.D09G093100' => 'ghi', 'Gohir.D09G102200' => 'ghi', 'Gohir.D09G102300' => 'ghi', 'Gorai.001G129400' => 'gra', 'Gorai.004G008200' => 'gra', 'Gorai.006G109800' => 'gra', 'Gorai.006G119500' => 'gra', 'Gorai.006G121300' => 'gra', 'Gorai.010G180700' => 'gra', 'GSVIVG01012716001' => 'vvi', 'GSVIVG01025118001' => 'vvi', 'GSVIVG01030439001' => 'vvi', 'GSVIVG01031397001' => 'vvi', 'HanXRQChr01g0004201' => 'han', 'HanXRQChr02g0054941' => 'han', 'HanXRQChr05g0141811' => 'han', 'HanXRQChr07g0197751' => 'han', 'HanXRQChr11g0346691' => 'han', 'HanXRQChr13g0396971' => 'han', 'HanXRQChr14g0432951' => 'han', 'HanXRQChr14g0452001' => 'han', 'HanXRQChr15g0496681' => 'han', 'HanXRQChr17g0557491' => 'han', 'HanXRQChr17g0557501' => 'han', 'Haze_06809' => 'cav', 'Haze_12852' => 'cav', 'Haze_15850' => 'cav', 'Haze_23446' => 'cav', 'Haze_23942' => 'cav', 'Haze_23943' => 'cav', 'Hma1.2p1_0091F.1_g046450' => 'hma', 'Hma1.2p1_0128F.1_g059910' => 'hma', 'Hma1.2p1_0249F.1_g102260' => 'hma', 'Hma1.2p1_0453F.1_g156190' => 'hma', 'Hma1.2p1_0695F.1_g204380' => 'hma', 'Hma1.2p1_0749F.1_g212650' => 'hma', 'Hma1.2p1_2156F.1_g315420' => 'hma', 'Hma1.2p1_2686F.1_g326940' => 'hma', 'HPP92_006428' => 'vpl', 'HPP92_012069' => 'vpl', 'HPP92_014129' => 'vpl', 'HPP92_014133' => 'vpl', 'HPP92_017315' => 'vpl', 'HPP92_026445' => 'vpl', 'HPP92_026446' => 'vpl', 'Hund00774' => 'sun', 'Hund07682' => 'sun', 'Hund21413' => 'sun', 'Hund23462' => 'sun', 'Hund23463' => 'sun', 'Lalb_Chr03g0027911' => 'lal', 'Lalb_Chr13g0304271' => 'lal', 'Lalb_Chr19g0137471' => 'lal', 'Lalb_Chr22g0350651' => 'lal', 'Lalb_Chr24g0395151' => 'lal', 'Lj1A1231T40' => 'lonja', 'Lj1A221T48' => 'lonja', 'Lj1C924T12' => 'lonja', 'Lj2C993G6' => 'lonja', 'Lj3g0005790' => 'lja', 'Lj3g0015432' => 'lja', 'Lj3g0017722' => 'lja', 'Lj3g0018497' => 'lja', 'Lj4g0025071' => 'lja', 'Lsat_1_v5_gn_1_129680' => 'lsa', 'Lsat_1_v5_gn_2_25321' => 'lsa', 'Lsat_1_v5_gn_2_95461' => 'lsa', 'Lsat_1_v5_gn_4_159620' => 'lsa', 'Lsat_1_v5_gn_6_41301' => 'lsa', 'Lsat_1_v5_gn_6_74660' => 'lsa', 'Lsat_1_v5_gn_7_11520' => 'lsa', 'Lsat_1_v5_gn_9_67680' => 'lsa', 'Manes.04G008300' => 'mes', 'Manes.04G008400' => 'mes', 'Manes.04G026500' => 'mes', 'Manes.10G135300' => 'mes', 'Manes.11G157300' => 'mes', 'Manes.12G074000' => 'mes', 'Manes.16G006200' => 'mes', 'Manes.17G026400' => 'mes', 'Mapoly0024s0086' => 'mpo', 'Mapoly0024s0087' => 'mpo', 'Mapoly0071s0057' => 'mpo', 'Mapoly0204s0012' => 'mpo', 'MBI04_g37681_MAGBIO' => 'mbi', 'MBI05_g17779_MAGBIO' => 'mbi', 'MBI12_g31184_MAGBIO' => 'mbi', 'MBI17_g11083_MAGBIO' => 'mbi', 'MBI18_g03883_MAGBIO' => 'mbi', 'MBI18_g28940_MAGBIO' => 'mbi', 'MCO01G690' => 'mco', 'MD03G1109900' => 'mdo', 'MD03G1134800' => 'mdo', 'MD05G1348000' => 'mdo', 'MD10G1322400' => 'mdo', 'MD11G1123300' => 'mdo', 'MD11G1157600' => 'mdo', 'Medtr2g084875' => 'mtr', 'Medtr2g088130' => 'mtr', 'Medtr4g055310' => 'mtr', 'Medtr4g061070' => 'mtr', 'Medtr4g132250' => 'mtr', 'MELO3C004795.2' => 'cme', 'MELO3C004797.2' => 'cme', 'MELO3C007396.2' => 'cme', 'MELO3C019277.2' => 'cme', 'MELO3C021449.2' => 'cme', 'MELO3C025736.2' => 'cme', 'Migut.D02175' => 'egut', 'Migut.H01573' => 'egut', 'Migut.M01327' => 'egut', 'Migut.N02513' => 'egut', 'MSTRG.14638' => 'ama', 'MSTRG.18632' => 'ama', 'MSTRG.7203' => 'ama', 'Nitab4.5_0000533g0140' => 'nta', 'Nitab4.5_0000888g0150' => 'nta', 'Nitab4.5_0001453g0040' => 'nta', 'Nitab4.5_0002827g0090' => 'nta', 'Nitab4.5_0003082g0040' => 'nta', 'Nitab4.5_0007799g0040' => 'nta', 'Nitab4.5_0008983g0010' => 'nta', 'Nitab4.5_0009017g0020' => 'nta', 'Nn1g02132' => 'nnu', 'Nn1g03492' => 'nnu', 'Nn1g03493' => 'nnu', 'Nn1g03494' => 'nnu', 'Nn1g07164' => 'nnu', 'Nn1g07291' => 'nnu', 'Nn2g10655' => 'nnu', 'Nn2g11652' => 'nnu', 'Nn2g14008' => 'nnu', 'Nn3g17476' => 'nnu', 'Nn3g17477' => 'nnu', 'Nn4g22370' => 'nnu', 'Nn4g25255' => 'nnu', 'Nn5g27755' => 'nnu', 'Nn6g34260' => 'nnu', 'Nn6g35041' => 'nnu', 'Oeu005924.1' => 'oeu', 'Oeu008383.1' => 'oeu', 'Oeu014928.1' => 'oeu', 'Oeu019889.1' => 'oeu', 'Oeu022271.1' => 'oeu', 'Oeu025271.1' => 'oeu', 'Oeu036302.1' => 'oeu', 'Oeu044100.1' => 'oeu', 'Os01g0528300' => 'osa', 'Os03g0286200' => 'osa', 'Os04g0406600' => 'osa', 'Os07g0512000' => 'osa', 'Os07g0694600' => 'osa', 'Os08g0411000' => 'osa', 'Os09g0565700' => 'osa', 'Os09g0566050' => 'osa', 'Os10g0523700' => 'osa', 'Peaxi162Scf00002g00514' => 'pax', 'Peaxi162Scf00047g01817' => 'pax', 'Peaxi162Scf00114g00001' => 'pax', 'Peaxi162Scf00147g00613' => 'pax', 'Peaxi162Scf00389g00425' => 'pax', 'PGR042G1139' => 'pgr', 'PGR042G3273' => 'pgr', 'PGR102G2180' => 'pgr', 'PGR119G0234' => 'pgr', 'PGR119G0668' => 'pgr', 'PGSC0003DMG400007122' => 'stu', 'PGSC0003DMG400016478' => 'stu', 'PGSC0003DMG400025374' => 'stu', 'PGSC0003DMG400026536' => 'stu', 'Phvul.003G079600' => 'pvu', 'Phvul.005G115600' => 'pvu', 'Phvul.005G127100' => 'pvu', 'Phvul.006G149500' => 'pvu', 'Phvul.006G149600' => 'pvu', 'Phvul.011G071800' => 'pvu', 'Phvul.011G090400' => 'pvu', 'Potri.004G013400' => 'ptr', 'Potri.004G188100' => 'ptr', 'Potri.008G195500' => 'ptr', 'Potri.009G148800' => 'ptr', 'Potri.011G004700' => 'ptr', 'Pp3c17_22810' => 'ppa', 'Pp3c18_4480' => 'ppa', 'Pp3c19_13030' => 'ppa', 'Pp3c1_33620' => 'ppa', 'Pp3c2_9380' => 'ppa', 'PRCOL_00001023' => 'pco', 'Prupe.3G216300' => 'ppe', 'Prupe.4G019500' => 'ppe', 'Prupe.6G092500' => 'ppe', 'Prupe.6G119200' => 'ppe', 'Psat0s1945g0080' => 'psa', 'Psat0s4167g0040' => 'psa', 'Psat1g185800' => 'psa', 'Psat4g006440' => 'psa', 'Psat4g006480' => 'psa', 'Psat4g168120' => 'psa', 'Psat5g255680' => 'psa', 'Psat5g261760' => 'psa', 'Psat7g222120' => 'psa', 'PSO063G7252' => 'pso', 'PSO170G4778' => 'pso', 'PSO210G2249' => 'pso', 'PSO339G2411' => 'pso', 'PSO339G2457' => 'pso', 'PSO339G2854' => 'pso', 'PSO339G4288' => 'pso', 'PSO339G4615' => 'pso', 'PSO384G2796' => 'pso', 'PSO384G2940' => 'pso', 'PSO384G4227' => 'pso', 'PSO478G1425' => 'pso', 'PSO541G3863' => 'pso', 'PSO675G0507' => 'pso', 'PSO782G0338' => 'pso', 'PSO832G0644' => 'pso', 'QL01p013664' => 'qlo', 'QL01p036598' => 'qlo', 'QL05p072984' => 'qlo', 'QL08p005768' => 'qlo', 'QL08p032743' => 'qlo', 'QL93p0073_0439' => 'qlo', 'QL93p0073_0444' => 'qlo', 'RcHm_v2.0_Chr5g0002851' => 'rch', 'RcHm_v2.0_Chr5g0055201' => 'rch', 'RcHm_v2.0_Chr5g0061191' => 'rch', 'RcHm_v2.0_Chr7g0203231' => 'rch', 'Rhsim01G0208100' => 'rsi', 'Rhsim01G0208200' => 'rsi', 'Rhsim02G0106500' => 'rsi', 'Rhsim03G0107900' => 'rsi', 'Rhsim06G0163400' => 'rsi', 'Rhsim13G0105200' => 'rsi', 'Sabra04G0006300' => 'sbr', 'Sabra04G0127000' => 'sbr', 'Sabra08G0148700' => 'sbr', 'Sabra09G0117400' => 'sbr', 'SalBow1G3326' => 'sbo', 'SalBow3G3228' => 'sbo', 'SalBow6G1634' => 'sbo', 'SalBow6G3603' => 'sbo', 'SalBow6G5266' => 'sbo', 'SalBow7G2265' => 'sbo', 'SalBow8G0850' => 'sbo', 'SalBow8G2592' => 'sbo', 'Sc05g0009240' => 'sci', 'Sc12g0002300' => 'sci', 'Sc21g0000100' => 'sci', 'Sc21g0004720' => 'sci', 'Sed0002949' => 'sed', 'Sed0004114' => 'sed', 'Sed0004306' => 'sed', 'Sed0006172' => 'sed', 'Sed0008413' => 'sed', 'Sed0013809' => 'sed', 'Sed0019556' => 'sed', 'SEGI_03570' => 'sgi', 'SEGI_07859' => 'sgi', 'SEGI_15042' => 'sgi', 'SEGI_16263' => 'sgi', 'SEGI_16552' => 'sgi', 'SEGI_24331' => 'sgi', 'SEGI_27316' => 'sgi', 'SEGI_29521' => 'sgi', 'SEGI_41342' => 'sgi', 'SGA_v2.0_scaffold27G11617' => 'sas', 'SGA_v2.0_scaffold316G48428' => 'sas', 'SGA_v2.0_scaffold49G18261' => 'sas', 'SGA_v2.0_scaffold7G03831' => 'sas', 'SGA_v2.0_scaffold93G28359' => 'sas', 'SHI02210' => 'shi', 'SHI06028' => 'shi', 'SHI06321' => 'shi', 'SMO111G0012' => 'smo', 'SMO228G0080' => 'smo', 'SMO356G0756' => 'smo', 'Solyc02g080620.3' => 'sly', 'Solyc06g074530.1' => 'sly', 'Solyc11g066890.1' => 'sly', 'Solyc11g072520.3' => 'sly', 'Sopen02g025330' => 'spe', 'Sopen06g031000' => 'spe', 'Sopen09g008240' => 'spe', 'Sopen09g025210' => 'spe', 'Sopen11g026600' => 'spe', 'Sopen11g030170' => 'spe', 'Sp1g10420' => 'spa', 'Sp3g06570' => 'spa', 'Sp4g10660' => 'spa', 'Sp5g16460' => 'spa', 'Sp6g22710' => 'spa', 'TAR365G0112' => 'tar', 'TAR369G0717' => 'tar', 'TAR374G0976' => 'tar', 'TAR623G1128' => 'tar', 'TAR626G1937' => 'tar', 'TAR627G0123' => 'tar', 'TAR628G0305' => 'tar', 'TAR636G1176' => 'tar', 'TAR636G2442' => 'tar', 'THA.LOC104800556' => 'tha', 'THA.LOC104809501' => 'tha', 'THA.LOC104815126' => 'tha', 'THA.LOC104815732' => 'tha', 'THA.LOC104823528' => 'tha', 'Thecc.02G365600' => 'tca', 'Thecc.06G222300' => 'tca', 'Thecc.09G261800' => 'tca', 'Thecc.09G291400' => 'tca', 'Thhalv10003028m.g' => 'esa', 'Thhalv10007886m.g' => 'esa', 'Thhalv10016085m.g' => 'esa', 'Thhalv10016681m.g' => 'esa', 'Thhalv10020951m.g' => 'esa', 'TPR.G15598' => 'tpr', 'TPR.G29305' => 'tpr', 'TPR.G32395' => 'tpr', 'TPR.G36998' => 'tpr', 'TPR.G4227' => 'tpr', 'TWI18G1433' => 'twi', 'TWI31G0755' => 'twi', 'TWI38G0912' => 'twi', 'TWI75G1097' => 'twi', 'TWI75G1619' => 'twi', 'TWI79G1336' => 'twi', 'unitig_0.g943' => 'ugi', 'unitig_0.g944' => 'ugi', 'unitig_22.g6646' => 'ugi', 'unitig_37.g12681' => 'ugi', 'unitig_8.g3290' => 'ugi', 'vmacro03278' => 'vma', 'vmacro12197' => 'vma', 'vmacro14478' => 'vma', 'vmacro15787' => 'vma', 'vmacro15789' => 'vma', 'vmacro15790' => 'vma', 'vmacro15806' => 'vma', 'vmacro22907' => 'vma', 'vmacro22908' => 'vma', 'vmacro22909' => 'vma', 'vmacro23108' => 'vma', 'VMungo0540G0540' => 'vmu', 'VMungo0540G2468' => 'vmu', 'VMungo1080G0390' => 'vmu', 'VMungo1080G1165' => 'vmu', 'VMungo1127G0170' => 'vmu', 'VMungo1127G2099' => 'vmu', 'VMungo1215G3013' => 'vmu', 'Zm00001eb013110' => 'zma', 'Zm00001eb084260' => 'zma', 'Zm00001eb096110' => 'zma', 'Zm00001eb217510' => 'zma', 'Zm00001eb322550' => 'zma', 'Zm00001eb390770' => 'zma', 'Zm00001eb397170' => 'zma', 'Zm00001eb404610' => 'zma', 'Zm00001eb421790' => 'zma' ), 'gf_id' => 'HOM05D000911', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000911' ), 'data_identifier' => 'HOM05D000911', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000911', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27780' => 'bna', 'A03p35380' => 'bna', 'A04p21160' => 'bna', 'A05p40570' => 'bna', 'A06p26900' => 'bna', 'A08p33230' => 'bna', 'A09p65960' => 'bna', 'A10p18290' => 'bna', 'Aa31LG1G12990' => 'aar', 'Aa31LG1G2980' => 'aar', 'Aa31LG4G14320' => 'aar', 'Aa31LG7G11800' => 'aar', 'Aa31sc36G50' => 'aar', 'Aa31sc36G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3721' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5459' => 'aag', 'Actinidia03028' => 'ach', 'Actinidia03753' => 'ach', 'Actinidia04187' => 'ach', 'Actinidia05509' => 'ach', 'Actinidia24180' => 'ach', 'Actinidia26906' => 'ach', 'Actinidia37097' => 'ach', 'Actinidia38249' => 'ach', 'Ah.01g003470' => 'amhyb', 'Ah.01g004580' => 'amhyb', 'Ah.01g014850' => 'amhyb', 'Ah.01g016830' => 'amhyb', 'Ah.14g088000' => 'amhyb', 'AL1G22980' => 'aly', 'AL3G18990' => 'aly', 'AL4G22440' => 'aly', 'AL4G33180' => 'aly', 'AL5G22920' => 'aly', 'AL6G33660' => 'aly', 'AL8G20720' => 'aly', 'Aqoxy1G00935' => 'aox', 'Aqoxy1G02094' => 'aox', 'Aqoxy2G01239' => 'aox', 'Aqoxy4G01870' => 'aox', 'Aqoxy7G00450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.36ZVTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71EM27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5D6C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH3WRE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3NCM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RIM768' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YB5YRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z36GDV' => 'arhy', 'AT1G08250' => 'ath', 'AT1G11790' => 'ath', 'AT2G27820' => 'ath', 'AT3G07630' => 'ath', 'AT3G44720' => 'ath', 'AT5G22630' => 'ath', 'ATR0693G304' => 'atr', 'ATR0794G109' => 'atr', 'ATR0820G120' => 'atr', 'ATR1159G064' => 'atr', 'Atru.chr10.2239' => 'acertr', 'Atru.chr3.3371' => 'acertr', 'Atru.chr6.3202' => 'acertr', 'AUR62006499' => 'cqu', 'AUR62012718' => 'cqu', 'AUR62021938' => 'cqu', 'AUR62023932' => 'cqu', 'AUR62025034' => 'cqu', 'AUR62025035' => 'cqu', 'AUR62038307' => 'cqu', 'AUR62043466' => 'cqu', 'BcaB02g10748' => 'bca', 'BcaB03g13231' => 'bca', 'BcaB03g14689' => 'bca', 'BcaB05g22716' => 'bca', 'BcaB06g28172' => 'bca', 'BcaB08g36413' => 'bca', 'BcaC01g02186' => 'bca', 'BcaC01g04272' => 'bca', 'BcaC02g08080' => 'bca', 'BcaC02g08227' => 'bca', 'BcaC03g13901' => 'bca', 'BcaC04g19593' => 'bca', 'BcaC04g20874' => 'bca', 'BcaC05g29557' => 'bca', 'BcaC06g35505' => 'bca', 'BcaC07g41954' => 'bca', 'BcaC07g41955' => 'bca', 'BcaC07g41956' => 'bca', 'BcaC07g42519' => 'bca', 'BcaC07g42520' => 'bca', 'BcaC07g42523' => 'bca', 'BcaC07g42524' => 'bca', 'BcaC07g42525' => 'bca', 'BcaC08g47480' => 'bca', 'BcaC08g47481' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00530' => 'bna', 'BolC2t07178H' => 'bol', 'BolC3t16567H' => 'bol', 'BolC4t27234H' => 'bol', 'BolC5t29728H' => 'bol', 'BolC5t34622H' => 'bol', 'BolC6t40321H' => 'bol', 'BolC7t42028H' => 'bol', 'BolC8t49125H' => 'bol', 'BolC8t52538H' => 'bol', 'BolC8t52539H' => 'bol', 'BolC9t56681H' => 'bol', 'BolC9t58266H' => 'bol', 'BolSC21t60294H' => 'bol', 'BraA02t05670Z' => 'bra', 'BraA03t12716Z' => 'bra', 'BraA04t17685Z' => 'bra', 'BraA05t22788Z' => 'bra', 'BraA06t24032Z' => 'bra', 'BraA06t25625Z' => 'bra', 'BraA07t27930Z' => 'bra', 'BraA08t35242Z' => 'bra', 'BraA09t38609Z' => 'bra', 'BraA10t43905Z' => 'bra', 'C02p11060' => 'bna', 'C03p42990' => 'bna', 'C03p67310' => 'bna', 'C04p56990' => 'bna', 'C04p58660' => 'bna', 'C05p09890' => 'bna', 'C05p59680' => 'bna', 'C06p19830' => 'bna', 'C06p53040' => 'bna', 'C07p15230' => 'bna', 'C08p50070' => 'bna', 'C08p50090' => 'bna', 'C09p38330' => 'bna', 'C09p53940' => 'bna', 'CAN.G1014.1' => 'can', 'CAN.G644.30' => 'can', 'CAN.G84.47' => 'can', 'CAN.G919.8' => 'can', 'CANSAT54G0113' => 'cansat', 'CANSAT54G1286' => 'cansat', 'CANSAT64G1020' => 'cansat', 'CARHR008080' => 'chi', 'CARHR008090' => 'chi', 'CARHR012130' => 'chi', 'CARHR038390' => 'chi', 'CARHR082330' => 'chi', 'CARHR120520' => 'chi', 'CARHR151470' => 'chi', 'CARHR190950' => 'chi', 'Carub.0001s0760' => 'cru', 'Carub.0001s1146' => 'cru', 'Carub.0003s0721' => 'cru', 'Carub.0004s0858' => 'cru', 'Carub.0005s1040' => 'cru', 'Carub.0006s2035' => 'cru', 'Carub.0015s0005' => 'cru', 'Ca_01607_v3' => 'car', 'Ca_01677_v3' => 'car', 'Ca_06087_v3' => 'car', 'Ca_19238_v3' => 'car', 'Ca_19373_v3' => 'car', 'Ca_21079_v3' => 'car', 'CBR_g54016' => 'cbr', 'CBR_g54018' => 'cbr', 'CBR_g54020' => 'cbr', 'Cc01_g09780' => 'ccan', 'Cc01_g11680' => 'ccan', 'Cc02_g15610' => 'ccan', 'Cc05_g04350' => 'ccan', 'Cc09_g01580' => 'ccan', 'CDE01G0795' => 'cde', 'CDE02G2024' => 'cde', 'CDE02G2260' => 'cde', 'CDE02G4561' => 'cde', 'CDE05G2733' => 'cde', 'CDE05G3422' => 'cde', 'CDE06G2003' => 'cde', 'CDE08G0576' => 'cde', 'CDE09G0048' => 'cde', 'CDE11G0805' => 'cde', 'Cfa003644' => 'cfa', 'Cfa006290' => 'cfa', 'Cfa010080' => 'cfa', 'Cfa011376' => 'cfa', 'Cfa011576' => 'cfa', 'Cfa011577' => 'cfa', 'Cfa014389' => 'cfa', 'Ciclev10006044m.g' => 'ccl', 'Ciclev10006954m.g' => 'ccl', 'Ciclev10015131m.g' => 'ccl', 'Ciclev10015580m.g' => 'ccl', 'Ciclev10028359m.g' => 'ccl', 'Ciclev10028573m.g' => 'ccl', 'CiPaw.03G159300' => 'cil', 'CiPaw.04G115100' => 'cil', 'CiPaw.09G092800' => 'cil', 'CiPaw.10G071800' => 'cil', 'CiPaw.13G105800' => 'cil', 'CiPaw.13G141000' => 'cil', 'CiPaw.14G103400' => 'cil', 'ClCG01G012700' => 'cla', 'ClCG01G012720' => 'cla', 'ClCG01G021920' => 'cla', 'ClCG02G008870' => 'cla', 'ClCG02G020840' => 'cla', 'ClCG02G021930' => 'cla', 'COL.COLO4_19302' => 'col', 'COL.COLO4_25262' => 'col', 'COL.COLO4_31788' => 'col', 'Cpa.g.c34684' => 'cpa', 'Cpa.g.c36520.1' => 'cpa', 'Cpa.g.c45626' => 'cpa', 'Cpa.g.sc121.17' => 'cpa', 'Cpa.g.sc13.22' => 'cpa', 'Cpa.g.sc87.88' => 'cpa', 'Cre06.g261800' => 'cre', 'CsaV3_1G014500' => 'csa', 'CsaV3_1G014510' => 'csa', 'CsaV3_2G034880' => 'csa', 'CsaV3_6G014760' => 'csa', 'CsaV3_6G021500' => 'csa', 'CsaV3_6G048980' => 'csa', 'CSS0002511' => 'camsi', 'CSS0007556' => 'camsi', 'CSS0008532' => 'camsi', 'CSS0009709' => 'camsi', 'CSS0010486' => 'camsi', 'CSS0016768' => 'camsi', 'CSS0023512' => 'camsi', 'CSS0025341' => 'camsi', 'CSS0027999' => 'camsi', 'CSS0028944' => 'camsi', 'CSS0032292' => 'camsi', 'CSS0032464' => 'camsi', 'CSS0037153' => 'camsi', 'CSS0039256' => 'camsi', 'CSS0048392' => 'camsi', 'CSS0050458' => 'camsi', 'DCAR_004224' => 'dca', 'DCAR_006147' => 'dca', 'DCAR_006465' => 'dca', 'DCAR_008159' => 'dca', 'DCAR_012164' => 'dca', 'DCAR_019764' => 'dca', 'Dinv05418' => 'din', 'Dinv10839' => 'din', 'Dinv12521' => 'din', 'Dinv13900' => 'din', 'Dinv29426' => 'din', 'Duzib150G0263' => 'dzi', 'Duzib168G1178' => 'dzi', 'Duzib168G1924' => 'dzi', 'Duzib170G0299' => 'dzi', 'Duzib170G0813' => 'dzi', 'Duzib235G1128' => 'dzi', 'Duzib248G1060' => 'dzi', 'ECA232G1910' => 'eca', 'ECA233G4621' => 'eca', 'ECA238G1216' => 'eca', 'ECA238G1784' => 'eca', 'ECA248G1242' => 'eca', 'EL10Ac8g20071' => 'bvu', 'EL10Ac9g21086' => 'bvu', 'EL10Ac9g22407' => 'bvu', 'EL10Ac9g22412' => 'bvu', 'Eucgr.A01119' => 'egr', 'Eucgr.E04043' => 'egr', 'Eucgr.J00428' => 'egr', 'Eucgr.J00958' => 'egr', 'FAN11G3091' => 'fan', 'FAN11G3651' => 'fan', 'FAN16G2566' => 'fan', 'FAN21G3155' => 'fan', 'FAN21G3400' => 'fan', 'FAN21G3543' => 'fan', 'FAN25G0234' => 'fan', 'FAN25G1422' => 'fan', 'FAN25G3392' => 'fan', 'FvH4_3g01940' => 'fve', 'FvH4_3g29870' => 'fve', 'FvH4_3g33680' => 'fve', 'Glyma.09G004200' => 'gma', 'Glyma.11G151288' => 'gma', 'Glyma.11G189100' => 'gma', 'Glyma.12G072500' => 'gma', 'Glyma.12G085500' => 'gma', 'Glyma.12G181800' => 'gma', 'Glyma.12G193000' => 'gma', 'Glyma.13G309300' => 'gma', 'Glyma.13G319000' => 'gma', 'Glyma.17G012600' => 'gma', 'Gohir.A06G148600' => 'ghi', 'Gohir.A07G115800' => 'ghi', 'Gohir.A08G003600' => 'ghi', 'Gohir.A09G093300' => 'ghi', 'Gohir.A09G105400' => 'ghi', 'Gohir.A09G105500' => 'ghi', 'Gohir.D06G154600' => 'ghi', 'Gohir.D07G120200' => 'ghi', 'Gohir.D08G013900' => 'ghi', 'Gohir.D09G093100' => 'ghi', 'Gohir.D09G102200' => 'ghi', 'Gohir.D09G102300' => 'ghi', 'Gorai.001G129400' => 'gra', 'Gorai.004G008200' => 'gra', 'Gorai.006G109800' => 'gra', 'Gorai.006G119500' => 'gra', 'Gorai.006G121300' => 'gra', 'Gorai.010G180700' => 'gra', 'GSVIVG01012716001' => 'vvi', 'GSVIVG01025118001' => 'vvi', 'GSVIVG01030439001' => 'vvi', 'GSVIVG01031397001' => 'vvi', 'HanXRQChr01g0004201' => 'han', 'HanXRQChr02g0054941' => 'han', 'HanXRQChr05g0141811' => 'han', 'HanXRQChr07g0197751' => 'han', 'HanXRQChr11g0346691' => 'han', 'HanXRQChr13g0396971' => 'han', 'HanXRQChr14g0432951' => 'han', 'HanXRQChr14g0452001' => 'han', 'HanXRQChr15g0496681' => 'han', 'HanXRQChr17g0557491' => 'han', 'HanXRQChr17g0557501' => 'han', 'Haze_06809' => 'cav', 'Haze_12852' => 'cav', 'Haze_15850' => 'cav', 'Haze_23446' => 'cav', 'Haze_23942' => 'cav', 'Haze_23943' => 'cav', 'Hma1.2p1_0091F.1_g046450' => 'hma', 'Hma1.2p1_0128F.1_g059910' => 'hma', 'Hma1.2p1_0249F.1_g102260' => 'hma', 'Hma1.2p1_0453F.1_g156190' => 'hma', 'Hma1.2p1_0695F.1_g204380' => 'hma', 'Hma1.2p1_0749F.1_g212650' => 'hma', 'Hma1.2p1_2156F.1_g315420' => 'hma', 'Hma1.2p1_2686F.1_g326940' => 'hma', 'HPP92_006428' => 'vpl', 'HPP92_012069' => 'vpl', 'HPP92_014129' => 'vpl', 'HPP92_014133' => 'vpl', 'HPP92_017315' => 'vpl', 'HPP92_026445' => 'vpl', 'HPP92_026446' => 'vpl', 'Hund00774' => 'sun', 'Hund07682' => 'sun', 'Hund21413' => 'sun', 'Hund23462' => 'sun', 'Hund23463' => 'sun', 'Lalb_Chr03g0027911' => 'lal', 'Lalb_Chr13g0304271' => 'lal', 'Lalb_Chr19g0137471' => 'lal', 'Lalb_Chr22g0350651' => 'lal', 'Lalb_Chr24g0395151' => 'lal', 'Lj1A1231T40' => 'lonja', 'Lj1A221T48' => 'lonja', 'Lj1C924T12' => 'lonja', 'Lj2C993G6' => 'lonja', 'Lj3g0005790' => 'lja', 'Lj3g0015432' => 'lja', 'Lj3g0017722' => 'lja', 'Lj3g0018497' => 'lja', 'Lj4g0025071' => 'lja', 'Lsat_1_v5_gn_1_129680' => 'lsa', 'Lsat_1_v5_gn_2_25321' => 'lsa', 'Lsat_1_v5_gn_2_95461' => 'lsa', 'Lsat_1_v5_gn_4_159620' => 'lsa', 'Lsat_1_v5_gn_6_41301' => 'lsa', 'Lsat_1_v5_gn_6_74660' => 'lsa', 'Lsat_1_v5_gn_7_11520' => 'lsa', 'Lsat_1_v5_gn_9_67680' => 'lsa', 'Manes.04G008300' => 'mes', 'Manes.04G008400' => 'mes', 'Manes.04G026500' => 'mes', 'Manes.10G135300' => 'mes', 'Manes.11G157300' => 'mes', 'Manes.12G074000' => 'mes', 'Manes.16G006200' => 'mes', 'Manes.17G026400' => 'mes', 'Mapoly0024s0086' => 'mpo', 'Mapoly0024s0087' => 'mpo', 'Mapoly0071s0057' => 'mpo', 'Mapoly0204s0012' => 'mpo', 'MBI04_g37681_MAGBIO' => 'mbi', 'MBI05_g17779_MAGBIO' => 'mbi', 'MBI12_g31184_MAGBIO' => 'mbi', 'MBI17_g11083_MAGBIO' => 'mbi', 'MBI18_g03883_MAGBIO' => 'mbi', 'MBI18_g28940_MAGBIO' => 'mbi', 'MCO01G690' => 'mco', 'MD03G1109900' => 'mdo', 'MD03G1134800' => 'mdo', 'MD05G1348000' => 'mdo', 'MD10G1322400' => 'mdo', 'MD11G1123300' => 'mdo', 'MD11G1157600' => 'mdo', 'Medtr2g084875' => 'mtr', 'Medtr2g088130' => 'mtr', 'Medtr4g055310' => 'mtr', 'Medtr4g061070' => 'mtr', 'Medtr4g132250' => 'mtr', 'MELO3C004795.2' => 'cme', 'MELO3C004797.2' => 'cme', 'MELO3C007396.2' => 'cme', 'MELO3C019277.2' => 'cme', 'MELO3C021449.2' => 'cme', 'MELO3C025736.2' => 'cme', 'Migut.D02175' => 'egut', 'Migut.H01573' => 'egut', 'Migut.M01327' => 'egut', 'Migut.N02513' => 'egut', 'MSTRG.14638' => 'ama', 'MSTRG.18632' => 'ama', 'MSTRG.7203' => 'ama', 'Nitab4.5_0000533g0140' => 'nta', 'Nitab4.5_0000888g0150' => 'nta', 'Nitab4.5_0001453g0040' => 'nta', 'Nitab4.5_0002827g0090' => 'nta', 'Nitab4.5_0003082g0040' => 'nta', 'Nitab4.5_0007799g0040' => 'nta', 'Nitab4.5_0008983g0010' => 'nta', 'Nitab4.5_0009017g0020' => 'nta', 'Nn1g02132' => 'nnu', 'Nn1g03492' => 'nnu', 'Nn1g03493' => 'nnu', 'Nn1g03494' => 'nnu', 'Nn1g07164' => 'nnu', 'Nn1g07291' => 'nnu', 'Nn2g10655' => 'nnu', 'Nn2g11652' => 'nnu', 'Nn2g14008' => 'nnu', 'Nn3g17476' => 'nnu', 'Nn3g17477' => 'nnu', 'Nn4g22370' => 'nnu', 'Nn4g25255' => 'nnu', 'Nn5g27755' => 'nnu', 'Nn6g34260' => 'nnu', 'Nn6g35041' => 'nnu', 'Oeu005924.1' => 'oeu', 'Oeu008383.1' => 'oeu', 'Oeu014928.1' => 'oeu', 'Oeu019889.1' => 'oeu', 'Oeu022271.1' => 'oeu', 'Oeu025271.1' => 'oeu', 'Oeu036302.1' => 'oeu', 'Oeu044100.1' => 'oeu', 'Os01g0528300' => 'osa', 'Os03g0286200' => 'osa', 'Os04g0406600' => 'osa', 'Os07g0512000' => 'osa', 'Os07g0694600' => 'osa', 'Os08g0411000' => 'osa', 'Os09g0565700' => 'osa', 'Os09g0566050' => 'osa', 'Os10g0523700' => 'osa', 'Peaxi162Scf00002g00514' => 'pax', 'Peaxi162Scf00047g01817' => 'pax', 'Peaxi162Scf00114g00001' => 'pax', 'Peaxi162Scf00147g00613' => 'pax', 'Peaxi162Scf00389g00425' => 'pax', 'PGR042G1139' => 'pgr', 'PGR042G3273' => 'pgr', 'PGR102G2180' => 'pgr', 'PGR119G0234' => 'pgr', 'PGR119G0668' => 'pgr', 'PGSC0003DMG400007122' => 'stu', 'PGSC0003DMG400016478' => 'stu', 'PGSC0003DMG400025374' => 'stu', 'PGSC0003DMG400026536' => 'stu', 'Phvul.003G079600' => 'pvu', 'Phvul.005G115600' => 'pvu', 'Phvul.005G127100' => 'pvu', 'Phvul.006G149500' => 'pvu', 'Phvul.006G149600' => 'pvu', 'Phvul.011G071800' => 'pvu', 'Phvul.011G090400' => 'pvu', 'Potri.004G013400' => 'ptr', 'Potri.004G188100' => 'ptr', 'Potri.008G195500' => 'ptr', 'Potri.009G148800' => 'ptr', 'Potri.011G004700' => 'ptr', 'Pp3c17_22810' => 'ppa', 'Pp3c18_4480' => 'ppa', 'Pp3c19_13030' => 'ppa', 'Pp3c1_33620' => 'ppa', 'Pp3c2_9380' => 'ppa', 'PRCOL_00001023' => 'pco', 'Prupe.3G216300' => 'ppe', 'Prupe.4G019500' => 'ppe', 'Prupe.6G092500' => 'ppe', 'Prupe.6G119200' => 'ppe', 'Psat0s1945g0080' => 'psa', 'Psat0s4167g0040' => 'psa', 'Psat1g185800' => 'psa', 'Psat4g006440' => 'psa', 'Psat4g006480' => 'psa', 'Psat4g168120' => 'psa', 'Psat5g255680' => 'psa', 'Psat5g261760' => 'psa', 'Psat7g222120' => 'psa', 'PSO063G7252' => 'pso', 'PSO170G4778' => 'pso', 'PSO210G2249' => 'pso', 'PSO339G2411' => 'pso', 'PSO339G2457' => 'pso', 'PSO339G2854' => 'pso', 'PSO339G4288' => 'pso', 'PSO339G4615' => 'pso', 'PSO384G2796' => 'pso', 'PSO384G2940' => 'pso', 'PSO384G4227' => 'pso', 'PSO478G1425' => 'pso', 'PSO541G3863' => 'pso', 'PSO675G0507' => 'pso', 'PSO782G0338' => 'pso', 'PSO832G0644' => 'pso', 'QL01p013664' => 'qlo', 'QL01p036598' => 'qlo', 'QL05p072984' => 'qlo', 'QL08p005768' => 'qlo', 'QL08p032743' => 'qlo', 'QL93p0073_0439' => 'qlo', 'QL93p0073_0444' => 'qlo', 'RcHm_v2.0_Chr5g0002851' => 'rch', 'RcHm_v2.0_Chr5g0055201' => 'rch', 'RcHm_v2.0_Chr5g0061191' => 'rch', 'RcHm_v2.0_Chr7g0203231' => 'rch', 'Rhsim01G0208100' => 'rsi', 'Rhsim01G0208200' => 'rsi', 'Rhsim02G0106500' => 'rsi', 'Rhsim03G0107900' => 'rsi', 'Rhsim06G0163400' => 'rsi', 'Rhsim13G0105200' => 'rsi', 'Sabra04G0006300' => 'sbr', 'Sabra04G0127000' => 'sbr', 'Sabra08G0148700' => 'sbr', 'Sabra09G0117400' => 'sbr', 'SalBow1G3326' => 'sbo', 'SalBow3G3228' => 'sbo', 'SalBow6G1634' => 'sbo', 'SalBow6G3603' => 'sbo', 'SalBow6G5266' => 'sbo', 'SalBow7G2265' => 'sbo', 'SalBow8G0850' => 'sbo', 'SalBow8G2592' => 'sbo', 'Sc05g0009240' => 'sci', 'Sc12g0002300' => 'sci', 'Sc21g0000100' => 'sci', 'Sc21g0004720' => 'sci', 'Sed0002949' => 'sed', 'Sed0004114' => 'sed', 'Sed0004306' => 'sed', 'Sed0006172' => 'sed', 'Sed0008413' => 'sed', 'Sed0013809' => 'sed', 'Sed0019556' => 'sed', 'SEGI_03570' => 'sgi', 'SEGI_07859' => 'sgi', 'SEGI_15042' => 'sgi', 'SEGI_16263' => 'sgi', 'SEGI_16552' => 'sgi', 'SEGI_24331' => 'sgi', 'SEGI_27316' => 'sgi', 'SEGI_29521' => 'sgi', 'SEGI_41342' => 'sgi', 'SGA_v2.0_scaffold27G11617' => 'sas', 'SGA_v2.0_scaffold316G48428' => 'sas', 'SGA_v2.0_scaffold49G18261' => 'sas', 'SGA_v2.0_scaffold7G03831' => 'sas', 'SGA_v2.0_scaffold93G28359' => 'sas', 'SHI02210' => 'shi', 'SHI06028' => 'shi', 'SHI06321' => 'shi', 'SMO111G0012' => 'smo', 'SMO228G0080' => 'smo', 'SMO356G0756' => 'smo', 'Solyc02g080620.3' => 'sly', 'Solyc06g074530.1' => 'sly', 'Solyc11g066890.1' => 'sly', 'Solyc11g072520.3' => 'sly', 'Sopen02g025330' => 'spe', 'Sopen06g031000' => 'spe', 'Sopen09g008240' => 'spe', 'Sopen09g025210' => 'spe', 'Sopen11g026600' => 'spe', 'Sopen11g030170' => 'spe', 'Sp1g10420' => 'spa', 'Sp3g06570' => 'spa', 'Sp4g10660' => 'spa', 'Sp5g16460' => 'spa', 'Sp6g22710' => 'spa', 'TAR365G0112' => 'tar', 'TAR369G0717' => 'tar', 'TAR374G0976' => 'tar', 'TAR623G1128' => 'tar', 'TAR626G1937' => 'tar', 'TAR627G0123' => 'tar', 'TAR628G0305' => 'tar', 'TAR636G1176' => 'tar', 'TAR636G2442' => 'tar', 'THA.LOC104800556' => 'tha', 'THA.LOC104809501' => 'tha', 'THA.LOC104815126' => 'tha', 'THA.LOC104815732' => 'tha', 'THA.LOC104823528' => 'tha', 'Thecc.02G365600' => 'tca', 'Thecc.06G222300' => 'tca', 'Thecc.09G261800' => 'tca', 'Thecc.09G291400' => 'tca', 'Thhalv10003028m.g' => 'esa', 'Thhalv10007886m.g' => 'esa', 'Thhalv10016085m.g' => 'esa', 'Thhalv10016681m.g' => 'esa', 'Thhalv10020951m.g' => 'esa', 'TPR.G15598' => 'tpr', 'TPR.G29305' => 'tpr', 'TPR.G32395' => 'tpr', 'TPR.G36998' => 'tpr', 'TPR.G4227' => 'tpr', 'TWI18G1433' => 'twi', 'TWI31G0755' => 'twi', 'TWI38G0912' => 'twi', 'TWI75G1097' => 'twi', 'TWI75G1619' => 'twi', 'TWI79G1336' => 'twi', 'unitig_0.g943' => 'ugi', 'unitig_0.g944' => 'ugi', 'unitig_22.g6646' => 'ugi', 'unitig_37.g12681' => 'ugi', 'unitig_8.g3290' => 'ugi', 'vmacro03278' => 'vma', 'vmacro12197' => 'vma', 'vmacro14478' => 'vma', 'vmacro15787' => 'vma', 'vmacro15789' => 'vma', 'vmacro15790' => 'vma', 'vmacro15806' => 'vma', 'vmacro22907' => 'vma', 'vmacro22908' => 'vma', 'vmacro22909' => 'vma', 'vmacro23108' => 'vma', 'VMungo0540G0540' => 'vmu', 'VMungo0540G2468' => 'vmu', 'VMungo1080G0390' => 'vmu', 'VMungo1080G1165' => 'vmu', 'VMungo1127G0170' => 'vmu', 'VMungo1127G2099' => 'vmu', 'VMungo1215G3013' => 'vmu', 'Zm00001eb013110' => 'zma', 'Zm00001eb084260' => 'zma', 'Zm00001eb096110' => 'zma', 'Zm00001eb217510' => 'zma', 'Zm00001eb322550' => 'zma', 'Zm00001eb390770' => 'zma', 'Zm00001eb397170' => 'zma', 'Zm00001eb404610' => 'zma', 'Zm00001eb421790' => 'zma' ) $gf_id = 'HOM05D000911' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000911' ) $data_identifier = 'HOM05D000911' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 16, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 5, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 6, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 8, 'nnu' => (int) 16, 'oeu' => (int) 8, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 5, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 16, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421790' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000911', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27780' => 'bna', 'A03p35380' => 'bna', 'A04p21160' => 'bna', 'A05p40570' => 'bna', 'A06p26900' => 'bna', 'A08p33230' => 'bna', 'A09p65960' => 'bna', 'A10p18290' => 'bna', 'Aa31LG1G12990' => 'aar', 'Aa31LG1G2980' => 'aar', 'Aa31LG4G14320' => 'aar', 'Aa31LG7G11800' => 'aar', 'Aa31sc36G50' => 'aar', 'Aa31sc36G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3721' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5459' => 'aag', 'Actinidia03028' => 'ach', 'Actinidia03753' => 'ach', 'Actinidia04187' => 'ach', 'Actinidia05509' => 'ach', 'Actinidia24180' => 'ach', 'Actinidia26906' => 'ach', 'Actinidia37097' => 'ach', 'Actinidia38249' => 'ach', 'Ah.01g003470' => 'amhyb', 'Ah.01g004580' => 'amhyb', 'Ah.01g014850' => 'amhyb', 'Ah.01g016830' => 'amhyb', 'Ah.14g088000' => 'amhyb', 'AL1G22980' => 'aly', 'AL3G18990' => 'aly', 'AL4G22440' => 'aly', 'AL4G33180' => 'aly', 'AL5G22920' => 'aly', 'AL6G33660' => 'aly', 'AL8G20720' => 'aly', 'Aqoxy1G00935' => 'aox', 'Aqoxy1G02094' => 'aox', 'Aqoxy2G01239' => 'aox', 'Aqoxy4G01870' => 'aox', 'Aqoxy7G00450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.36ZVTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71EM27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5D6C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH3WRE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3NCM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RIM768' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YB5YRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z36GDV' => 'arhy', 'AT1G08250' => 'ath', 'AT1G11790' => 'ath', 'AT2G27820' => 'ath', 'AT3G07630' => 'ath', 'AT3G44720' => 'ath', 'AT5G22630' => 'ath', 'ATR0693G304' => 'atr', 'ATR0794G109' => 'atr', 'ATR0820G120' => 'atr', 'ATR1159G064' => 'atr', 'Atru.chr10.2239' => 'acertr', 'Atru.chr3.3371' => 'acertr', 'Atru.chr6.3202' => 'acertr', 'AUR62006499' => 'cqu', 'AUR62012718' => 'cqu', 'AUR62021938' => 'cqu', 'AUR62023932' => 'cqu', 'AUR62025034' => 'cqu', 'AUR62025035' => 'cqu', 'AUR62038307' => 'cqu', 'AUR62043466' => 'cqu', 'BcaB02g10748' => 'bca', 'BcaB03g13231' => 'bca', 'BcaB03g14689' => 'bca', 'BcaB05g22716' => 'bca', 'BcaB06g28172' => 'bca', 'BcaB08g36413' => 'bca', 'BcaC01g02186' => 'bca', 'BcaC01g04272' => 'bca', 'BcaC02g08080' => 'bca', 'BcaC02g08227' => 'bca', 'BcaC03g13901' => 'bca', 'BcaC04g19593' => 'bca', 'BcaC04g20874' => 'bca', 'BcaC05g29557' => 'bca', 'BcaC06g35505' => 'bca', 'BcaC07g41954' => 'bca', 'BcaC07g41955' => 'bca', 'BcaC07g41956' => 'bca', 'BcaC07g42519' => 'bca', 'BcaC07g42520' => 'bca', 'BcaC07g42523' => 'bca', 'BcaC07g42524' => 'bca', 'BcaC07g42525' => 'bca', 'BcaC08g47480' => 'bca', 'BcaC08g47481' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00530' => 'bna', 'BolC2t07178H' => 'bol', 'BolC3t16567H' => 'bol', 'BolC4t27234H' => 'bol', 'BolC5t29728H' => 'bol', 'BolC5t34622H' => 'bol', 'BolC6t40321H' => 'bol', 'BolC7t42028H' => 'bol', 'BolC8t49125H' => 'bol', 'BolC8t52538H' => 'bol', 'BolC8t52539H' => 'bol', 'BolC9t56681H' => 'bol', 'BolC9t58266H' => 'bol', 'BolSC21t60294H' => 'bol', 'BraA02t05670Z' => 'bra', 'BraA03t12716Z' => 'bra', 'BraA04t17685Z' => 'bra', 'BraA05t22788Z' => 'bra', 'BraA06t24032Z' => 'bra', 'BraA06t25625Z' => 'bra', 'BraA07t27930Z' => 'bra', 'BraA08t35242Z' => 'bra', 'BraA09t38609Z' => 'bra', 'BraA10t43905Z' => 'bra', 'C02p11060' => 'bna', 'C03p42990' => 'bna', 'C03p67310' => 'bna', 'C04p56990' => 'bna', 'C04p58660' => 'bna', 'C05p09890' => 'bna', 'C05p59680' => 'bna', 'C06p19830' => 'bna', 'C06p53040' => 'bna', 'C07p15230' => 'bna', 'C08p50070' => 'bna', 'C08p50090' => 'bna', 'C09p38330' => 'bna', 'C09p53940' => 'bna', 'CAN.G1014.1' => 'can', 'CAN.G644.30' => 'can', 'CAN.G84.47' => 'can', 'CAN.G919.8' => 'can', 'CANSAT54G0113' => 'cansat', 'CANSAT54G1286' => 'cansat', 'CANSAT64G1020' => 'cansat', 'CARHR008080' => 'chi', 'CARHR008090' => 'chi', 'CARHR012130' => 'chi', 'CARHR038390' => 'chi', 'CARHR082330' => 'chi', 'CARHR120520' => 'chi', 'CARHR151470' => 'chi', 'CARHR190950' => 'chi', 'Carub.0001s0760' => 'cru', 'Carub.0001s1146' => 'cru', 'Carub.0003s0721' => 'cru', 'Carub.0004s0858' => 'cru', 'Carub.0005s1040' => 'cru', 'Carub.0006s2035' => 'cru', 'Carub.0015s0005' => 'cru', 'Ca_01607_v3' => 'car', 'Ca_01677_v3' => 'car', 'Ca_06087_v3' => 'car', 'Ca_19238_v3' => 'car', 'Ca_19373_v3' => 'car', 'Ca_21079_v3' => 'car', 'CBR_g54016' => 'cbr', 'CBR_g54018' => 'cbr', 'CBR_g54020' => 'cbr', 'Cc01_g09780' => 'ccan', 'Cc01_g11680' => 'ccan', 'Cc02_g15610' => 'ccan', 'Cc05_g04350' => 'ccan', 'Cc09_g01580' => 'ccan', 'CDE01G0795' => 'cde', 'CDE02G2024' => 'cde', 'CDE02G2260' => 'cde', 'CDE02G4561' => 'cde', 'CDE05G2733' => 'cde', 'CDE05G3422' => 'cde', 'CDE06G2003' => 'cde', 'CDE08G0576' => 'cde', 'CDE09G0048' => 'cde', 'CDE11G0805' => 'cde', 'Cfa003644' => 'cfa', 'Cfa006290' => 'cfa', 'Cfa010080' => 'cfa', 'Cfa011376' => 'cfa', 'Cfa011576' => 'cfa', 'Cfa011577' => 'cfa', 'Cfa014389' => 'cfa', 'Ciclev10006044m.g' => 'ccl', 'Ciclev10006954m.g' => 'ccl', 'Ciclev10015131m.g' => 'ccl', 'Ciclev10015580m.g' => 'ccl', 'Ciclev10028359m.g' => 'ccl', 'Ciclev10028573m.g' => 'ccl', 'CiPaw.03G159300' => 'cil', 'CiPaw.04G115100' => 'cil', 'CiPaw.09G092800' => 'cil', 'CiPaw.10G071800' => 'cil', 'CiPaw.13G105800' => 'cil', 'CiPaw.13G141000' => 'cil', 'CiPaw.14G103400' => 'cil', 'ClCG01G012700' => 'cla', 'ClCG01G012720' => 'cla', 'ClCG01G021920' => 'cla', 'ClCG02G008870' => 'cla', 'ClCG02G020840' => 'cla', 'ClCG02G021930' => 'cla', 'COL.COLO4_19302' => 'col', 'COL.COLO4_25262' => 'col', 'COL.COLO4_31788' => 'col', 'Cpa.g.c34684' => 'cpa', 'Cpa.g.c36520.1' => 'cpa', 'Cpa.g.c45626' => 'cpa', 'Cpa.g.sc121.17' => 'cpa', 'Cpa.g.sc13.22' => 'cpa', 'Cpa.g.sc87.88' => 'cpa', 'Cre06.g261800' => 'cre', 'CsaV3_1G014500' => 'csa', 'CsaV3_1G014510' => 'csa', 'CsaV3_2G034880' => 'csa', 'CsaV3_6G014760' => 'csa', 'CsaV3_6G021500' => 'csa', 'CsaV3_6G048980' => 'csa', 'CSS0002511' => 'camsi', 'CSS0007556' => 'camsi', 'CSS0008532' => 'camsi', 'CSS0009709' => 'camsi', 'CSS0010486' => 'camsi', 'CSS0016768' => 'camsi', 'CSS0023512' => 'camsi', 'CSS0025341' => 'camsi', 'CSS0027999' => 'camsi', 'CSS0028944' => 'camsi', 'CSS0032292' => 'camsi', 'CSS0032464' => 'camsi', 'CSS0037153' => 'camsi', 'CSS0039256' => 'camsi', 'CSS0048392' => 'camsi', 'CSS0050458' => 'camsi', 'DCAR_004224' => 'dca', 'DCAR_006147' => 'dca', 'DCAR_006465' => 'dca', 'DCAR_008159' => 'dca', 'DCAR_012164' => 'dca', 'DCAR_019764' => 'dca', 'Dinv05418' => 'din', 'Dinv10839' => 'din', 'Dinv12521' => 'din', 'Dinv13900' => 'din', 'Dinv29426' => 'din', 'Duzib150G0263' => 'dzi', 'Duzib168G1178' => 'dzi', 'Duzib168G1924' => 'dzi', 'Duzib170G0299' => 'dzi', 'Duzib170G0813' => 'dzi', 'Duzib235G1128' => 'dzi', 'Duzib248G1060' => 'dzi', 'ECA232G1910' => 'eca', 'ECA233G4621' => 'eca', 'ECA238G1216' => 'eca', 'ECA238G1784' => 'eca', 'ECA248G1242' => 'eca', 'EL10Ac8g20071' => 'bvu', 'EL10Ac9g21086' => 'bvu', 'EL10Ac9g22407' => 'bvu', 'EL10Ac9g22412' => 'bvu', 'Eucgr.A01119' => 'egr', 'Eucgr.E04043' => 'egr', 'Eucgr.J00428' => 'egr', 'Eucgr.J00958' => 'egr', 'FAN11G3091' => 'fan', 'FAN11G3651' => 'fan', 'FAN16G2566' => 'fan', 'FAN21G3155' => 'fan', 'FAN21G3400' => 'fan', 'FAN21G3543' => 'fan', 'FAN25G0234' => 'fan', 'FAN25G1422' => 'fan', 'FAN25G3392' => 'fan', 'FvH4_3g01940' => 'fve', 'FvH4_3g29870' => 'fve', 'FvH4_3g33680' => 'fve', 'Glyma.09G004200' => 'gma', 'Glyma.11G151288' => 'gma', 'Glyma.11G189100' => 'gma', 'Glyma.12G072500' => 'gma', 'Glyma.12G085500' => 'gma', 'Glyma.12G181800' => 'gma', 'Glyma.12G193000' => 'gma', 'Glyma.13G309300' => 'gma', 'Glyma.13G319000' => 'gma', 'Glyma.17G012600' => 'gma', 'Gohir.A06G148600' => 'ghi', 'Gohir.A07G115800' => 'ghi', 'Gohir.A08G003600' => 'ghi', 'Gohir.A09G093300' => 'ghi', 'Gohir.A09G105400' => 'ghi', 'Gohir.A09G105500' => 'ghi', 'Gohir.D06G154600' => 'ghi', 'Gohir.D07G120200' => 'ghi', 'Gohir.D08G013900' => 'ghi', 'Gohir.D09G093100' => 'ghi', 'Gohir.D09G102200' => 'ghi', 'Gohir.D09G102300' => 'ghi', 'Gorai.001G129400' => 'gra', 'Gorai.004G008200' => 'gra', 'Gorai.006G109800' => 'gra', 'Gorai.006G119500' => 'gra', 'Gorai.006G121300' => 'gra', 'Gorai.010G180700' => 'gra', 'GSVIVG01012716001' => 'vvi', 'GSVIVG01025118001' => 'vvi', 'GSVIVG01030439001' => 'vvi', 'GSVIVG01031397001' => 'vvi', 'HanXRQChr01g0004201' => 'han', 'HanXRQChr02g0054941' => 'han', 'HanXRQChr05g0141811' => 'han', 'HanXRQChr07g0197751' => 'han', 'HanXRQChr11g0346691' => 'han', 'HanXRQChr13g0396971' => 'han', 'HanXRQChr14g0432951' => 'han', 'HanXRQChr14g0452001' => 'han', 'HanXRQChr15g0496681' => 'han', 'HanXRQChr17g0557491' => 'han', 'HanXRQChr17g0557501' => 'han', 'Haze_06809' => 'cav', 'Haze_12852' => 'cav', 'Haze_15850' => 'cav', 'Haze_23446' => 'cav', 'Haze_23942' => 'cav', 'Haze_23943' => 'cav', 'Hma1.2p1_0091F.1_g046450' => 'hma', 'Hma1.2p1_0128F.1_g059910' => 'hma', 'Hma1.2p1_0249F.1_g102260' => 'hma', 'Hma1.2p1_0453F.1_g156190' => 'hma', 'Hma1.2p1_0695F.1_g204380' => 'hma', 'Hma1.2p1_0749F.1_g212650' => 'hma', 'Hma1.2p1_2156F.1_g315420' => 'hma', 'Hma1.2p1_2686F.1_g326940' => 'hma', 'HPP92_006428' => 'vpl', 'HPP92_012069' => 'vpl', 'HPP92_014129' => 'vpl', 'HPP92_014133' => 'vpl', 'HPP92_017315' => 'vpl', 'HPP92_026445' => 'vpl', 'HPP92_026446' => 'vpl', 'Hund00774' => 'sun', 'Hund07682' => 'sun', 'Hund21413' => 'sun', 'Hund23462' => 'sun', 'Hund23463' => 'sun', 'Lalb_Chr03g0027911' => 'lal', 'Lalb_Chr13g0304271' => 'lal', 'Lalb_Chr19g0137471' => 'lal', 'Lalb_Chr22g0350651' => 'lal', 'Lalb_Chr24g0395151' => 'lal', 'Lj1A1231T40' => 'lonja', 'Lj1A221T48' => 'lonja', 'Lj1C924T12' => 'lonja', 'Lj2C993G6' => 'lonja', 'Lj3g0005790' => 'lja', 'Lj3g0015432' => 'lja', 'Lj3g0017722' => 'lja', 'Lj3g0018497' => 'lja', 'Lj4g0025071' => 'lja', 'Lsat_1_v5_gn_1_129680' => 'lsa', 'Lsat_1_v5_gn_2_25321' => 'lsa', 'Lsat_1_v5_gn_2_95461' => 'lsa', 'Lsat_1_v5_gn_4_159620' => 'lsa', 'Lsat_1_v5_gn_6_41301' => 'lsa', 'Lsat_1_v5_gn_6_74660' => 'lsa', 'Lsat_1_v5_gn_7_11520' => 'lsa', 'Lsat_1_v5_gn_9_67680' => 'lsa', 'Manes.04G008300' => 'mes', 'Manes.04G008400' => 'mes', 'Manes.04G026500' => 'mes', 'Manes.10G135300' => 'mes', 'Manes.11G157300' => 'mes', 'Manes.12G074000' => 'mes', 'Manes.16G006200' => 'mes', 'Manes.17G026400' => 'mes', 'Mapoly0024s0086' => 'mpo', 'Mapoly0024s0087' => 'mpo', 'Mapoly0071s0057' => 'mpo', 'Mapoly0204s0012' => 'mpo', 'MBI04_g37681_MAGBIO' => 'mbi', 'MBI05_g17779_MAGBIO' => 'mbi', 'MBI12_g31184_MAGBIO' => 'mbi', 'MBI17_g11083_MAGBIO' => 'mbi', 'MBI18_g03883_MAGBIO' => 'mbi', 'MBI18_g28940_MAGBIO' => 'mbi', 'MCO01G690' => 'mco', 'MD03G1109900' => 'mdo', 'MD03G1134800' => 'mdo', 'MD05G1348000' => 'mdo', 'MD10G1322400' => 'mdo', 'MD11G1123300' => 'mdo', 'MD11G1157600' => 'mdo', 'Medtr2g084875' => 'mtr', 'Medtr2g088130' => 'mtr', 'Medtr4g055310' => 'mtr', 'Medtr4g061070' => 'mtr', 'Medtr4g132250' => 'mtr', 'MELO3C004795.2' => 'cme', 'MELO3C004797.2' => 'cme', 'MELO3C007396.2' => 'cme', 'MELO3C019277.2' => 'cme', 'MELO3C021449.2' => 'cme', 'MELO3C025736.2' => 'cme', 'Migut.D02175' => 'egut', 'Migut.H01573' => 'egut', 'Migut.M01327' => 'egut', 'Migut.N02513' => 'egut', 'MSTRG.14638' => 'ama', 'MSTRG.18632' => 'ama', 'MSTRG.7203' => 'ama', 'Nitab4.5_0000533g0140' => 'nta', 'Nitab4.5_0000888g0150' => 'nta', 'Nitab4.5_0001453g0040' => 'nta', 'Nitab4.5_0002827g0090' => 'nta', 'Nitab4.5_0003082g0040' => 'nta', 'Nitab4.5_0007799g0040' => 'nta', 'Nitab4.5_0008983g0010' => 'nta', 'Nitab4.5_0009017g0020' => 'nta', 'Nn1g02132' => 'nnu', 'Nn1g03492' => 'nnu', 'Nn1g03493' => 'nnu', 'Nn1g03494' => 'nnu', 'Nn1g07164' => 'nnu', 'Nn1g07291' => 'nnu', 'Nn2g10655' => 'nnu', 'Nn2g11652' => 'nnu', 'Nn2g14008' => 'nnu', 'Nn3g17476' => 'nnu', 'Nn3g17477' => 'nnu', 'Nn4g22370' => 'nnu', 'Nn4g25255' => 'nnu', 'Nn5g27755' => 'nnu', 'Nn6g34260' => 'nnu', 'Nn6g35041' => 'nnu', 'Oeu005924.1' => 'oeu', 'Oeu008383.1' => 'oeu', 'Oeu014928.1' => 'oeu', 'Oeu019889.1' => 'oeu', 'Oeu022271.1' => 'oeu', 'Oeu025271.1' => 'oeu', 'Oeu036302.1' => 'oeu', 'Oeu044100.1' => 'oeu', 'Os01g0528300' => 'osa', 'Os03g0286200' => 'osa', 'Os04g0406600' => 'osa', 'Os07g0512000' => 'osa', 'Os07g0694600' => 'osa', 'Os08g0411000' => 'osa', 'Os09g0565700' => 'osa', 'Os09g0566050' => 'osa', 'Os10g0523700' => 'osa', 'Peaxi162Scf00002g00514' => 'pax', 'Peaxi162Scf00047g01817' => 'pax', 'Peaxi162Scf00114g00001' => 'pax', 'Peaxi162Scf00147g00613' => 'pax', 'Peaxi162Scf00389g00425' => 'pax', 'PGR042G1139' => 'pgr', 'PGR042G3273' => 'pgr', 'PGR102G2180' => 'pgr', 'PGR119G0234' => 'pgr', 'PGR119G0668' => 'pgr', 'PGSC0003DMG400007122' => 'stu', 'PGSC0003DMG400016478' => 'stu', 'PGSC0003DMG400025374' => 'stu', 'PGSC0003DMG400026536' => 'stu', 'Phvul.003G079600' => 'pvu', 'Phvul.005G115600' => 'pvu', 'Phvul.005G127100' => 'pvu', 'Phvul.006G149500' => 'pvu', 'Phvul.006G149600' => 'pvu', 'Phvul.011G071800' => 'pvu', 'Phvul.011G090400' => 'pvu', 'Potri.004G013400' => 'ptr', 'Potri.004G188100' => 'ptr', 'Potri.008G195500' => 'ptr', 'Potri.009G148800' => 'ptr', 'Potri.011G004700' => 'ptr', 'Pp3c17_22810' => 'ppa', 'Pp3c18_4480' => 'ppa', 'Pp3c19_13030' => 'ppa', 'Pp3c1_33620' => 'ppa', 'Pp3c2_9380' => 'ppa', 'PRCOL_00001023' => 'pco', 'Prupe.3G216300' => 'ppe', 'Prupe.4G019500' => 'ppe', 'Prupe.6G092500' => 'ppe', 'Prupe.6G119200' => 'ppe', 'Psat0s1945g0080' => 'psa', 'Psat0s4167g0040' => 'psa', 'Psat1g185800' => 'psa', 'Psat4g006440' => 'psa', 'Psat4g006480' => 'psa', 'Psat4g168120' => 'psa', 'Psat5g255680' => 'psa', 'Psat5g261760' => 'psa', 'Psat7g222120' => 'psa', 'PSO063G7252' => 'pso', 'PSO170G4778' => 'pso', 'PSO210G2249' => 'pso', 'PSO339G2411' => 'pso', 'PSO339G2457' => 'pso', 'PSO339G2854' => 'pso', 'PSO339G4288' => 'pso', 'PSO339G4615' => 'pso', 'PSO384G2796' => 'pso', 'PSO384G2940' => 'pso', 'PSO384G4227' => 'pso', 'PSO478G1425' => 'pso', 'PSO541G3863' => 'pso', 'PSO675G0507' => 'pso', 'PSO782G0338' => 'pso', 'PSO832G0644' => 'pso', 'QL01p013664' => 'qlo', 'QL01p036598' => 'qlo', 'QL05p072984' => 'qlo', 'QL08p005768' => 'qlo', 'QL08p032743' => 'qlo', 'QL93p0073_0439' => 'qlo', 'QL93p0073_0444' => 'qlo', 'RcHm_v2.0_Chr5g0002851' => 'rch', 'RcHm_v2.0_Chr5g0055201' => 'rch', 'RcHm_v2.0_Chr5g0061191' => 'rch', 'RcHm_v2.0_Chr7g0203231' => 'rch', 'Rhsim01G0208100' => 'rsi', 'Rhsim01G0208200' => 'rsi', 'Rhsim02G0106500' => 'rsi', 'Rhsim03G0107900' => 'rsi', 'Rhsim06G0163400' => 'rsi', 'Rhsim13G0105200' => 'rsi', 'Sabra04G0006300' => 'sbr', 'Sabra04G0127000' => 'sbr', 'Sabra08G0148700' => 'sbr', 'Sabra09G0117400' => 'sbr', 'SalBow1G3326' => 'sbo', 'SalBow3G3228' => 'sbo', 'SalBow6G1634' => 'sbo', 'SalBow6G3603' => 'sbo', 'SalBow6G5266' => 'sbo', 'SalBow7G2265' => 'sbo', 'SalBow8G0850' => 'sbo', 'SalBow8G2592' => 'sbo', 'Sc05g0009240' => 'sci', 'Sc12g0002300' => 'sci', 'Sc21g0000100' => 'sci', 'Sc21g0004720' => 'sci', 'Sed0002949' => 'sed', 'Sed0004114' => 'sed', 'Sed0004306' => 'sed', 'Sed0006172' => 'sed', 'Sed0008413' => 'sed', 'Sed0013809' => 'sed', 'Sed0019556' => 'sed', 'SEGI_03570' => 'sgi', 'SEGI_07859' => 'sgi', 'SEGI_15042' => 'sgi', 'SEGI_16263' => 'sgi', 'SEGI_16552' => 'sgi', 'SEGI_24331' => 'sgi', 'SEGI_27316' => 'sgi', 'SEGI_29521' => 'sgi', 'SEGI_41342' => 'sgi', 'SGA_v2.0_scaffold27G11617' => 'sas', 'SGA_v2.0_scaffold316G48428' => 'sas', 'SGA_v2.0_scaffold49G18261' => 'sas', 'SGA_v2.0_scaffold7G03831' => 'sas', 'SGA_v2.0_scaffold93G28359' => 'sas', 'SHI02210' => 'shi', 'SHI06028' => 'shi', 'SHI06321' => 'shi', 'SMO111G0012' => 'smo', 'SMO228G0080' => 'smo', 'SMO356G0756' => 'smo', 'Solyc02g080620.3' => 'sly', 'Solyc06g074530.1' => 'sly', 'Solyc11g066890.1' => 'sly', 'Solyc11g072520.3' => 'sly', 'Sopen02g025330' => 'spe', 'Sopen06g031000' => 'spe', 'Sopen09g008240' => 'spe', 'Sopen09g025210' => 'spe', 'Sopen11g026600' => 'spe', 'Sopen11g030170' => 'spe', 'Sp1g10420' => 'spa', 'Sp3g06570' => 'spa', 'Sp4g10660' => 'spa', 'Sp5g16460' => 'spa', 'Sp6g22710' => 'spa', 'TAR365G0112' => 'tar', 'TAR369G0717' => 'tar', 'TAR374G0976' => 'tar', 'TAR623G1128' => 'tar', 'TAR626G1937' => 'tar', 'TAR627G0123' => 'tar', 'TAR628G0305' => 'tar', 'TAR636G1176' => 'tar', 'TAR636G2442' => 'tar', 'THA.LOC104800556' => 'tha', 'THA.LOC104809501' => 'tha', 'THA.LOC104815126' => 'tha', 'THA.LOC104815732' => 'tha', 'THA.LOC104823528' => 'tha', 'Thecc.02G365600' => 'tca', 'Thecc.06G222300' => 'tca', 'Thecc.09G261800' => 'tca', 'Thecc.09G291400' => 'tca', 'Thhalv10003028m.g' => 'esa', 'Thhalv10007886m.g' => 'esa', 'Thhalv10016085m.g' => 'esa', 'Thhalv10016681m.g' => 'esa', 'Thhalv10020951m.g' => 'esa', 'TPR.G15598' => 'tpr', 'TPR.G29305' => 'tpr', 'TPR.G32395' => 'tpr', 'TPR.G36998' => 'tpr', 'TPR.G4227' => 'tpr', 'TWI18G1433' => 'twi', 'TWI31G0755' => 'twi', 'TWI38G0912' => 'twi', 'TWI75G1097' => 'twi', 'TWI75G1619' => 'twi', 'TWI79G1336' => 'twi', 'unitig_0.g943' => 'ugi', 'unitig_0.g944' => 'ugi', 'unitig_22.g6646' => 'ugi', 'unitig_37.g12681' => 'ugi', 'unitig_8.g3290' => 'ugi', 'vmacro03278' => 'vma', 'vmacro12197' => 'vma', 'vmacro14478' => 'vma', 'vmacro15787' => 'vma', 'vmacro15789' => 'vma', 'vmacro15790' => 'vma', 'vmacro15806' => 'vma', 'vmacro22907' => 'vma', 'vmacro22908' => 'vma', 'vmacro22909' => 'vma', 'vmacro23108' => 'vma', 'VMungo0540G0540' => 'vmu', 'VMungo0540G2468' => 'vmu', 'VMungo1080G0390' => 'vmu', 'VMungo1080G1165' => 'vmu', 'VMungo1127G0170' => 'vmu', 'VMungo1127G2099' => 'vmu', 'VMungo1215G3013' => 'vmu', 'Zm00001eb013110' => 'zma', 'Zm00001eb084260' => 'zma', 'Zm00001eb096110' => 'zma', 'Zm00001eb217510' => 'zma', 'Zm00001eb322550' => 'zma', 'Zm00001eb390770' => 'zma', 'Zm00001eb397170' => 'zma', 'Zm00001eb404610' => 'zma', 'Zm00001eb421790' => 'zma' ), 'gf_id' => 'HOM05D000911', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000911' ), 'data_identifier' => 'HOM05D000911', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000911', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27780' => 'bna', 'A03p35380' => 'bna', 'A04p21160' => 'bna', 'A05p40570' => 'bna', 'A06p26900' => 'bna', 'A08p33230' => 'bna', 'A09p65960' => 'bna', 'A10p18290' => 'bna', 'Aa31LG1G12990' => 'aar', 'Aa31LG1G2980' => 'aar', 'Aa31LG4G14320' => 'aar', 'Aa31LG7G11800' => 'aar', 'Aa31sc36G50' => 'aar', 'Aa31sc36G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3721' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5459' => 'aag', 'Actinidia03028' => 'ach', 'Actinidia03753' => 'ach', 'Actinidia04187' => 'ach', 'Actinidia05509' => 'ach', 'Actinidia24180' => 'ach', 'Actinidia26906' => 'ach', 'Actinidia37097' => 'ach', 'Actinidia38249' => 'ach', 'Ah.01g003470' => 'amhyb', 'Ah.01g004580' => 'amhyb', 'Ah.01g014850' => 'amhyb', 'Ah.01g016830' => 'amhyb', 'Ah.14g088000' => 'amhyb', 'AL1G22980' => 'aly', 'AL3G18990' => 'aly', 'AL4G22440' => 'aly', 'AL4G33180' => 'aly', 'AL5G22920' => 'aly', 'AL6G33660' => 'aly', 'AL8G20720' => 'aly', 'Aqoxy1G00935' => 'aox', 'Aqoxy1G02094' => 'aox', 'Aqoxy2G01239' => 'aox', 'Aqoxy4G01870' => 'aox', 'Aqoxy7G00450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.36ZVTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71EM27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5D6C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH3WRE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3NCM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RIM768' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YB5YRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z36GDV' => 'arhy', 'AT1G08250' => 'ath', 'AT1G11790' => 'ath', 'AT2G27820' => 'ath', 'AT3G07630' => 'ath', 'AT3G44720' => 'ath', 'AT5G22630' => 'ath', 'ATR0693G304' => 'atr', 'ATR0794G109' => 'atr', 'ATR0820G120' => 'atr', 'ATR1159G064' => 'atr', 'Atru.chr10.2239' => 'acertr', 'Atru.chr3.3371' => 'acertr', 'Atru.chr6.3202' => 'acertr', 'AUR62006499' => 'cqu', 'AUR62012718' => 'cqu', 'AUR62021938' => 'cqu', 'AUR62023932' => 'cqu', 'AUR62025034' => 'cqu', 'AUR62025035' => 'cqu', 'AUR62038307' => 'cqu', 'AUR62043466' => 'cqu', 'BcaB02g10748' => 'bca', 'BcaB03g13231' => 'bca', 'BcaB03g14689' => 'bca', 'BcaB05g22716' => 'bca', 'BcaB06g28172' => 'bca', 'BcaB08g36413' => 'bca', 'BcaC01g02186' => 'bca', 'BcaC01g04272' => 'bca', 'BcaC02g08080' => 'bca', 'BcaC02g08227' => 'bca', 'BcaC03g13901' => 'bca', 'BcaC04g19593' => 'bca', 'BcaC04g20874' => 'bca', 'BcaC05g29557' => 'bca', 'BcaC06g35505' => 'bca', 'BcaC07g41954' => 'bca', 'BcaC07g41955' => 'bca', 'BcaC07g41956' => 'bca', 'BcaC07g42519' => 'bca', 'BcaC07g42520' => 'bca', 'BcaC07g42523' => 'bca', 'BcaC07g42524' => 'bca', 'BcaC07g42525' => 'bca', 'BcaC08g47480' => 'bca', 'BcaC08g47481' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00530' => 'bna', 'BolC2t07178H' => 'bol', 'BolC3t16567H' => 'bol', 'BolC4t27234H' => 'bol', 'BolC5t29728H' => 'bol', 'BolC5t34622H' => 'bol', 'BolC6t40321H' => 'bol', 'BolC7t42028H' => 'bol', 'BolC8t49125H' => 'bol', 'BolC8t52538H' => 'bol', 'BolC8t52539H' => 'bol', 'BolC9t56681H' => 'bol', 'BolC9t58266H' => 'bol', 'BolSC21t60294H' => 'bol', 'BraA02t05670Z' => 'bra', 'BraA03t12716Z' => 'bra', 'BraA04t17685Z' => 'bra', 'BraA05t22788Z' => 'bra', 'BraA06t24032Z' => 'bra', 'BraA06t25625Z' => 'bra', 'BraA07t27930Z' => 'bra', 'BraA08t35242Z' => 'bra', 'BraA09t38609Z' => 'bra', 'BraA10t43905Z' => 'bra', 'C02p11060' => 'bna', 'C03p42990' => 'bna', 'C03p67310' => 'bna', 'C04p56990' => 'bna', 'C04p58660' => 'bna', 'C05p09890' => 'bna', 'C05p59680' => 'bna', 'C06p19830' => 'bna', 'C06p53040' => 'bna', 'C07p15230' => 'bna', 'C08p50070' => 'bna', 'C08p50090' => 'bna', 'C09p38330' => 'bna', 'C09p53940' => 'bna', 'CAN.G1014.1' => 'can', 'CAN.G644.30' => 'can', 'CAN.G84.47' => 'can', 'CAN.G919.8' => 'can', 'CANSAT54G0113' => 'cansat', 'CANSAT54G1286' => 'cansat', 'CANSAT64G1020' => 'cansat', 'CARHR008080' => 'chi', 'CARHR008090' => 'chi', 'CARHR012130' => 'chi', 'CARHR038390' => 'chi', 'CARHR082330' => 'chi', 'CARHR120520' => 'chi', 'CARHR151470' => 'chi', 'CARHR190950' => 'chi', 'Carub.0001s0760' => 'cru', 'Carub.0001s1146' => 'cru', 'Carub.0003s0721' => 'cru', 'Carub.0004s0858' => 'cru', 'Carub.0005s1040' => 'cru', 'Carub.0006s2035' => 'cru', 'Carub.0015s0005' => 'cru', 'Ca_01607_v3' => 'car', 'Ca_01677_v3' => 'car', 'Ca_06087_v3' => 'car', 'Ca_19238_v3' => 'car', 'Ca_19373_v3' => 'car', 'Ca_21079_v3' => 'car', 'CBR_g54016' => 'cbr', 'CBR_g54018' => 'cbr', 'CBR_g54020' => 'cbr', 'Cc01_g09780' => 'ccan', 'Cc01_g11680' => 'ccan', 'Cc02_g15610' => 'ccan', 'Cc05_g04350' => 'ccan', 'Cc09_g01580' => 'ccan', 'CDE01G0795' => 'cde', 'CDE02G2024' => 'cde', 'CDE02G2260' => 'cde', 'CDE02G4561' => 'cde', 'CDE05G2733' => 'cde', 'CDE05G3422' => 'cde', 'CDE06G2003' => 'cde', 'CDE08G0576' => 'cde', 'CDE09G0048' => 'cde', 'CDE11G0805' => 'cde', 'Cfa003644' => 'cfa', 'Cfa006290' => 'cfa', 'Cfa010080' => 'cfa', 'Cfa011376' => 'cfa', 'Cfa011576' => 'cfa', 'Cfa011577' => 'cfa', 'Cfa014389' => 'cfa', 'Ciclev10006044m.g' => 'ccl', 'Ciclev10006954m.g' => 'ccl', 'Ciclev10015131m.g' => 'ccl', 'Ciclev10015580m.g' => 'ccl', 'Ciclev10028359m.g' => 'ccl', 'Ciclev10028573m.g' => 'ccl', 'CiPaw.03G159300' => 'cil', 'CiPaw.04G115100' => 'cil', 'CiPaw.09G092800' => 'cil', 'CiPaw.10G071800' => 'cil', 'CiPaw.13G105800' => 'cil', 'CiPaw.13G141000' => 'cil', 'CiPaw.14G103400' => 'cil', 'ClCG01G012700' => 'cla', 'ClCG01G012720' => 'cla', 'ClCG01G021920' => 'cla', 'ClCG02G008870' => 'cla', 'ClCG02G020840' => 'cla', 'ClCG02G021930' => 'cla', 'COL.COLO4_19302' => 'col', 'COL.COLO4_25262' => 'col', 'COL.COLO4_31788' => 'col', 'Cpa.g.c34684' => 'cpa', 'Cpa.g.c36520.1' => 'cpa', 'Cpa.g.c45626' => 'cpa', 'Cpa.g.sc121.17' => 'cpa', 'Cpa.g.sc13.22' => 'cpa', 'Cpa.g.sc87.88' => 'cpa', 'Cre06.g261800' => 'cre', 'CsaV3_1G014500' => 'csa', 'CsaV3_1G014510' => 'csa', 'CsaV3_2G034880' => 'csa', 'CsaV3_6G014760' => 'csa', 'CsaV3_6G021500' => 'csa', 'CsaV3_6G048980' => 'csa', 'CSS0002511' => 'camsi', 'CSS0007556' => 'camsi', 'CSS0008532' => 'camsi', 'CSS0009709' => 'camsi', 'CSS0010486' => 'camsi', 'CSS0016768' => 'camsi', 'CSS0023512' => 'camsi', 'CSS0025341' => 'camsi', 'CSS0027999' => 'camsi', 'CSS0028944' => 'camsi', 'CSS0032292' => 'camsi', 'CSS0032464' => 'camsi', 'CSS0037153' => 'camsi', 'CSS0039256' => 'camsi', 'CSS0048392' => 'camsi', 'CSS0050458' => 'camsi', 'DCAR_004224' => 'dca', 'DCAR_006147' => 'dca', 'DCAR_006465' => 'dca', 'DCAR_008159' => 'dca', 'DCAR_012164' => 'dca', 'DCAR_019764' => 'dca', 'Dinv05418' => 'din', 'Dinv10839' => 'din', 'Dinv12521' => 'din', 'Dinv13900' => 'din', 'Dinv29426' => 'din', 'Duzib150G0263' => 'dzi', 'Duzib168G1178' => 'dzi', 'Duzib168G1924' => 'dzi', 'Duzib170G0299' => 'dzi', 'Duzib170G0813' => 'dzi', 'Duzib235G1128' => 'dzi', 'Duzib248G1060' => 'dzi', 'ECA232G1910' => 'eca', 'ECA233G4621' => 'eca', 'ECA238G1216' => 'eca', 'ECA238G1784' => 'eca', 'ECA248G1242' => 'eca', 'EL10Ac8g20071' => 'bvu', 'EL10Ac9g21086' => 'bvu', 'EL10Ac9g22407' => 'bvu', 'EL10Ac9g22412' => 'bvu', 'Eucgr.A01119' => 'egr', 'Eucgr.E04043' => 'egr', 'Eucgr.J00428' => 'egr', 'Eucgr.J00958' => 'egr', 'FAN11G3091' => 'fan', 'FAN11G3651' => 'fan', 'FAN16G2566' => 'fan', 'FAN21G3155' => 'fan', 'FAN21G3400' => 'fan', 'FAN21G3543' => 'fan', 'FAN25G0234' => 'fan', 'FAN25G1422' => 'fan', 'FAN25G3392' => 'fan', 'FvH4_3g01940' => 'fve', 'FvH4_3g29870' => 'fve', 'FvH4_3g33680' => 'fve', 'Glyma.09G004200' => 'gma', 'Glyma.11G151288' => 'gma', 'Glyma.11G189100' => 'gma', 'Glyma.12G072500' => 'gma', 'Glyma.12G085500' => 'gma', 'Glyma.12G181800' => 'gma', 'Glyma.12G193000' => 'gma', 'Glyma.13G309300' => 'gma', 'Glyma.13G319000' => 'gma', 'Glyma.17G012600' => 'gma', 'Gohir.A06G148600' => 'ghi', 'Gohir.A07G115800' => 'ghi', 'Gohir.A08G003600' => 'ghi', 'Gohir.A09G093300' => 'ghi', 'Gohir.A09G105400' => 'ghi', 'Gohir.A09G105500' => 'ghi', 'Gohir.D06G154600' => 'ghi', 'Gohir.D07G120200' => 'ghi', 'Gohir.D08G013900' => 'ghi', 'Gohir.D09G093100' => 'ghi', 'Gohir.D09G102200' => 'ghi', 'Gohir.D09G102300' => 'ghi', 'Gorai.001G129400' => 'gra', 'Gorai.004G008200' => 'gra', 'Gorai.006G109800' => 'gra', 'Gorai.006G119500' => 'gra', 'Gorai.006G121300' => 'gra', 'Gorai.010G180700' => 'gra', 'GSVIVG01012716001' => 'vvi', 'GSVIVG01025118001' => 'vvi', 'GSVIVG01030439001' => 'vvi', 'GSVIVG01031397001' => 'vvi', 'HanXRQChr01g0004201' => 'han', 'HanXRQChr02g0054941' => 'han', 'HanXRQChr05g0141811' => 'han', 'HanXRQChr07g0197751' => 'han', 'HanXRQChr11g0346691' => 'han', 'HanXRQChr13g0396971' => 'han', 'HanXRQChr14g0432951' => 'han', 'HanXRQChr14g0452001' => 'han', 'HanXRQChr15g0496681' => 'han', 'HanXRQChr17g0557491' => 'han', 'HanXRQChr17g0557501' => 'han', 'Haze_06809' => 'cav', 'Haze_12852' => 'cav', 'Haze_15850' => 'cav', 'Haze_23446' => 'cav', 'Haze_23942' => 'cav', 'Haze_23943' => 'cav', 'Hma1.2p1_0091F.1_g046450' => 'hma', 'Hma1.2p1_0128F.1_g059910' => 'hma', 'Hma1.2p1_0249F.1_g102260' => 'hma', 'Hma1.2p1_0453F.1_g156190' => 'hma', 'Hma1.2p1_0695F.1_g204380' => 'hma', 'Hma1.2p1_0749F.1_g212650' => 'hma', 'Hma1.2p1_2156F.1_g315420' => 'hma', 'Hma1.2p1_2686F.1_g326940' => 'hma', 'HPP92_006428' => 'vpl', 'HPP92_012069' => 'vpl', 'HPP92_014129' => 'vpl', 'HPP92_014133' => 'vpl', 'HPP92_017315' => 'vpl', 'HPP92_026445' => 'vpl', 'HPP92_026446' => 'vpl', 'Hund00774' => 'sun', 'Hund07682' => 'sun', 'Hund21413' => 'sun', 'Hund23462' => 'sun', 'Hund23463' => 'sun', 'Lalb_Chr03g0027911' => 'lal', 'Lalb_Chr13g0304271' => 'lal', 'Lalb_Chr19g0137471' => 'lal', 'Lalb_Chr22g0350651' => 'lal', 'Lalb_Chr24g0395151' => 'lal', 'Lj1A1231T40' => 'lonja', 'Lj1A221T48' => 'lonja', 'Lj1C924T12' => 'lonja', 'Lj2C993G6' => 'lonja', 'Lj3g0005790' => 'lja', 'Lj3g0015432' => 'lja', 'Lj3g0017722' => 'lja', 'Lj3g0018497' => 'lja', 'Lj4g0025071' => 'lja', 'Lsat_1_v5_gn_1_129680' => 'lsa', 'Lsat_1_v5_gn_2_25321' => 'lsa', 'Lsat_1_v5_gn_2_95461' => 'lsa', 'Lsat_1_v5_gn_4_159620' => 'lsa', 'Lsat_1_v5_gn_6_41301' => 'lsa', 'Lsat_1_v5_gn_6_74660' => 'lsa', 'Lsat_1_v5_gn_7_11520' => 'lsa', 'Lsat_1_v5_gn_9_67680' => 'lsa', 'Manes.04G008300' => 'mes', 'Manes.04G008400' => 'mes', 'Manes.04G026500' => 'mes', 'Manes.10G135300' => 'mes', 'Manes.11G157300' => 'mes', 'Manes.12G074000' => 'mes', 'Manes.16G006200' => 'mes', 'Manes.17G026400' => 'mes', 'Mapoly0024s0086' => 'mpo', 'Mapoly0024s0087' => 'mpo', 'Mapoly0071s0057' => 'mpo', 'Mapoly0204s0012' => 'mpo', 'MBI04_g37681_MAGBIO' => 'mbi', 'MBI05_g17779_MAGBIO' => 'mbi', 'MBI12_g31184_MAGBIO' => 'mbi', 'MBI17_g11083_MAGBIO' => 'mbi', 'MBI18_g03883_MAGBIO' => 'mbi', 'MBI18_g28940_MAGBIO' => 'mbi', 'MCO01G690' => 'mco', 'MD03G1109900' => 'mdo', 'MD03G1134800' => 'mdo', 'MD05G1348000' => 'mdo', 'MD10G1322400' => 'mdo', 'MD11G1123300' => 'mdo', 'MD11G1157600' => 'mdo', 'Medtr2g084875' => 'mtr', 'Medtr2g088130' => 'mtr', 'Medtr4g055310' => 'mtr', 'Medtr4g061070' => 'mtr', 'Medtr4g132250' => 'mtr', 'MELO3C004795.2' => 'cme', 'MELO3C004797.2' => 'cme', 'MELO3C007396.2' => 'cme', 'MELO3C019277.2' => 'cme', 'MELO3C021449.2' => 'cme', 'MELO3C025736.2' => 'cme', 'Migut.D02175' => 'egut', 'Migut.H01573' => 'egut', 'Migut.M01327' => 'egut', 'Migut.N02513' => 'egut', 'MSTRG.14638' => 'ama', 'MSTRG.18632' => 'ama', 'MSTRG.7203' => 'ama', 'Nitab4.5_0000533g0140' => 'nta', 'Nitab4.5_0000888g0150' => 'nta', 'Nitab4.5_0001453g0040' => 'nta', 'Nitab4.5_0002827g0090' => 'nta', 'Nitab4.5_0003082g0040' => 'nta', 'Nitab4.5_0007799g0040' => 'nta', 'Nitab4.5_0008983g0010' => 'nta', 'Nitab4.5_0009017g0020' => 'nta', 'Nn1g02132' => 'nnu', 'Nn1g03492' => 'nnu', 'Nn1g03493' => 'nnu', 'Nn1g03494' => 'nnu', 'Nn1g07164' => 'nnu', 'Nn1g07291' => 'nnu', 'Nn2g10655' => 'nnu', 'Nn2g11652' => 'nnu', 'Nn2g14008' => 'nnu', 'Nn3g17476' => 'nnu', 'Nn3g17477' => 'nnu', 'Nn4g22370' => 'nnu', 'Nn4g25255' => 'nnu', 'Nn5g27755' => 'nnu', 'Nn6g34260' => 'nnu', 'Nn6g35041' => 'nnu', 'Oeu005924.1' => 'oeu', 'Oeu008383.1' => 'oeu', 'Oeu014928.1' => 'oeu', 'Oeu019889.1' => 'oeu', 'Oeu022271.1' => 'oeu', 'Oeu025271.1' => 'oeu', 'Oeu036302.1' => 'oeu', 'Oeu044100.1' => 'oeu', 'Os01g0528300' => 'osa', 'Os03g0286200' => 'osa', 'Os04g0406600' => 'osa', 'Os07g0512000' => 'osa', 'Os07g0694600' => 'osa', 'Os08g0411000' => 'osa', 'Os09g0565700' => 'osa', 'Os09g0566050' => 'osa', 'Os10g0523700' => 'osa', 'Peaxi162Scf00002g00514' => 'pax', 'Peaxi162Scf00047g01817' => 'pax', 'Peaxi162Scf00114g00001' => 'pax', 'Peaxi162Scf00147g00613' => 'pax', 'Peaxi162Scf00389g00425' => 'pax', 'PGR042G1139' => 'pgr', 'PGR042G3273' => 'pgr', 'PGR102G2180' => 'pgr', 'PGR119G0234' => 'pgr', 'PGR119G0668' => 'pgr', 'PGSC0003DMG400007122' => 'stu', 'PGSC0003DMG400016478' => 'stu', 'PGSC0003DMG400025374' => 'stu', 'PGSC0003DMG400026536' => 'stu', 'Phvul.003G079600' => 'pvu', 'Phvul.005G115600' => 'pvu', 'Phvul.005G127100' => 'pvu', 'Phvul.006G149500' => 'pvu', 'Phvul.006G149600' => 'pvu', 'Phvul.011G071800' => 'pvu', 'Phvul.011G090400' => 'pvu', 'Potri.004G013400' => 'ptr', 'Potri.004G188100' => 'ptr', 'Potri.008G195500' => 'ptr', 'Potri.009G148800' => 'ptr', 'Potri.011G004700' => 'ptr', 'Pp3c17_22810' => 'ppa', 'Pp3c18_4480' => 'ppa', 'Pp3c19_13030' => 'ppa', 'Pp3c1_33620' => 'ppa', 'Pp3c2_9380' => 'ppa', 'PRCOL_00001023' => 'pco', 'Prupe.3G216300' => 'ppe', 'Prupe.4G019500' => 'ppe', 'Prupe.6G092500' => 'ppe', 'Prupe.6G119200' => 'ppe', 'Psat0s1945g0080' => 'psa', 'Psat0s4167g0040' => 'psa', 'Psat1g185800' => 'psa', 'Psat4g006440' => 'psa', 'Psat4g006480' => 'psa', 'Psat4g168120' => 'psa', 'Psat5g255680' => 'psa', 'Psat5g261760' => 'psa', 'Psat7g222120' => 'psa', 'PSO063G7252' => 'pso', 'PSO170G4778' => 'pso', 'PSO210G2249' => 'pso', 'PSO339G2411' => 'pso', 'PSO339G2457' => 'pso', 'PSO339G2854' => 'pso', 'PSO339G4288' => 'pso', 'PSO339G4615' => 'pso', 'PSO384G2796' => 'pso', 'PSO384G2940' => 'pso', 'PSO384G4227' => 'pso', 'PSO478G1425' => 'pso', 'PSO541G3863' => 'pso', 'PSO675G0507' => 'pso', 'PSO782G0338' => 'pso', 'PSO832G0644' => 'pso', 'QL01p013664' => 'qlo', 'QL01p036598' => 'qlo', 'QL05p072984' => 'qlo', 'QL08p005768' => 'qlo', 'QL08p032743' => 'qlo', 'QL93p0073_0439' => 'qlo', 'QL93p0073_0444' => 'qlo', 'RcHm_v2.0_Chr5g0002851' => 'rch', 'RcHm_v2.0_Chr5g0055201' => 'rch', 'RcHm_v2.0_Chr5g0061191' => 'rch', 'RcHm_v2.0_Chr7g0203231' => 'rch', 'Rhsim01G0208100' => 'rsi', 'Rhsim01G0208200' => 'rsi', 'Rhsim02G0106500' => 'rsi', 'Rhsim03G0107900' => 'rsi', 'Rhsim06G0163400' => 'rsi', 'Rhsim13G0105200' => 'rsi', 'Sabra04G0006300' => 'sbr', 'Sabra04G0127000' => 'sbr', 'Sabra08G0148700' => 'sbr', 'Sabra09G0117400' => 'sbr', 'SalBow1G3326' => 'sbo', 'SalBow3G3228' => 'sbo', 'SalBow6G1634' => 'sbo', 'SalBow6G3603' => 'sbo', 'SalBow6G5266' => 'sbo', 'SalBow7G2265' => 'sbo', 'SalBow8G0850' => 'sbo', 'SalBow8G2592' => 'sbo', 'Sc05g0009240' => 'sci', 'Sc12g0002300' => 'sci', 'Sc21g0000100' => 'sci', 'Sc21g0004720' => 'sci', 'Sed0002949' => 'sed', 'Sed0004114' => 'sed', 'Sed0004306' => 'sed', 'Sed0006172' => 'sed', 'Sed0008413' => 'sed', 'Sed0013809' => 'sed', 'Sed0019556' => 'sed', 'SEGI_03570' => 'sgi', 'SEGI_07859' => 'sgi', 'SEGI_15042' => 'sgi', 'SEGI_16263' => 'sgi', 'SEGI_16552' => 'sgi', 'SEGI_24331' => 'sgi', 'SEGI_27316' => 'sgi', 'SEGI_29521' => 'sgi', 'SEGI_41342' => 'sgi', 'SGA_v2.0_scaffold27G11617' => 'sas', 'SGA_v2.0_scaffold316G48428' => 'sas', 'SGA_v2.0_scaffold49G18261' => 'sas', 'SGA_v2.0_scaffold7G03831' => 'sas', 'SGA_v2.0_scaffold93G28359' => 'sas', 'SHI02210' => 'shi', 'SHI06028' => 'shi', 'SHI06321' => 'shi', 'SMO111G0012' => 'smo', 'SMO228G0080' => 'smo', 'SMO356G0756' => 'smo', 'Solyc02g080620.3' => 'sly', 'Solyc06g074530.1' => 'sly', 'Solyc11g066890.1' => 'sly', 'Solyc11g072520.3' => 'sly', 'Sopen02g025330' => 'spe', 'Sopen06g031000' => 'spe', 'Sopen09g008240' => 'spe', 'Sopen09g025210' => 'spe', 'Sopen11g026600' => 'spe', 'Sopen11g030170' => 'spe', 'Sp1g10420' => 'spa', 'Sp3g06570' => 'spa', 'Sp4g10660' => 'spa', 'Sp5g16460' => 'spa', 'Sp6g22710' => 'spa', 'TAR365G0112' => 'tar', 'TAR369G0717' => 'tar', 'TAR374G0976' => 'tar', 'TAR623G1128' => 'tar', 'TAR626G1937' => 'tar', 'TAR627G0123' => 'tar', 'TAR628G0305' => 'tar', 'TAR636G1176' => 'tar', 'TAR636G2442' => 'tar', 'THA.LOC104800556' => 'tha', 'THA.LOC104809501' => 'tha', 'THA.LOC104815126' => 'tha', 'THA.LOC104815732' => 'tha', 'THA.LOC104823528' => 'tha', 'Thecc.02G365600' => 'tca', 'Thecc.06G222300' => 'tca', 'Thecc.09G261800' => 'tca', 'Thecc.09G291400' => 'tca', 'Thhalv10003028m.g' => 'esa', 'Thhalv10007886m.g' => 'esa', 'Thhalv10016085m.g' => 'esa', 'Thhalv10016681m.g' => 'esa', 'Thhalv10020951m.g' => 'esa', 'TPR.G15598' => 'tpr', 'TPR.G29305' => 'tpr', 'TPR.G32395' => 'tpr', 'TPR.G36998' => 'tpr', 'TPR.G4227' => 'tpr', 'TWI18G1433' => 'twi', 'TWI31G0755' => 'twi', 'TWI38G0912' => 'twi', 'TWI75G1097' => 'twi', 'TWI75G1619' => 'twi', 'TWI79G1336' => 'twi', 'unitig_0.g943' => 'ugi', 'unitig_0.g944' => 'ugi', 'unitig_22.g6646' => 'ugi', 'unitig_37.g12681' => 'ugi', 'unitig_8.g3290' => 'ugi', 'vmacro03278' => 'vma', 'vmacro12197' => 'vma', 'vmacro14478' => 'vma', 'vmacro15787' => 'vma', 'vmacro15789' => 'vma', 'vmacro15790' => 'vma', 'vmacro15806' => 'vma', 'vmacro22907' => 'vma', 'vmacro22908' => 'vma', 'vmacro22909' => 'vma', 'vmacro23108' => 'vma', 'VMungo0540G0540' => 'vmu', 'VMungo0540G2468' => 'vmu', 'VMungo1080G0390' => 'vmu', 'VMungo1080G1165' => 'vmu', 'VMungo1127G0170' => 'vmu', 'VMungo1127G2099' => 'vmu', 'VMungo1215G3013' => 'vmu', 'Zm00001eb013110' => 'zma', 'Zm00001eb084260' => 'zma', 'Zm00001eb096110' => 'zma', 'Zm00001eb217510' => 'zma', 'Zm00001eb322550' => 'zma', 'Zm00001eb390770' => 'zma', 'Zm00001eb397170' => 'zma', 'Zm00001eb404610' => 'zma', 'Zm00001eb421790' => 'zma' ) $gf_id = 'HOM05D000911' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000911' ) $data_identifier = 'HOM05D000911' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 16, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 5, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 6, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 8, 'nnu' => (int) 16, 'oeu' => (int) 8, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 5, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 16, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421790' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000911', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27780' => 'bna', 'A03p35380' => 'bna', 'A04p21160' => 'bna', 'A05p40570' => 'bna', 'A06p26900' => 'bna', 'A08p33230' => 'bna', 'A09p65960' => 'bna', 'A10p18290' => 'bna', 'Aa31LG1G12990' => 'aar', 'Aa31LG1G2980' => 'aar', 'Aa31LG4G14320' => 'aar', 'Aa31LG7G11800' => 'aar', 'Aa31sc36G50' => 'aar', 'Aa31sc36G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3721' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5459' => 'aag', 'Actinidia03028' => 'ach', 'Actinidia03753' => 'ach', 'Actinidia04187' => 'ach', 'Actinidia05509' => 'ach', 'Actinidia24180' => 'ach', 'Actinidia26906' => 'ach', 'Actinidia37097' => 'ach', 'Actinidia38249' => 'ach', 'Ah.01g003470' => 'amhyb', 'Ah.01g004580' => 'amhyb', 'Ah.01g014850' => 'amhyb', 'Ah.01g016830' => 'amhyb', 'Ah.14g088000' => 'amhyb', 'AL1G22980' => 'aly', 'AL3G18990' => 'aly', 'AL4G22440' => 'aly', 'AL4G33180' => 'aly', 'AL5G22920' => 'aly', 'AL6G33660' => 'aly', 'AL8G20720' => 'aly', 'Aqoxy1G00935' => 'aox', 'Aqoxy1G02094' => 'aox', 'Aqoxy2G01239' => 'aox', 'Aqoxy4G01870' => 'aox', 'Aqoxy7G00450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.36ZVTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71EM27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5D6C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH3WRE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3NCM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RIM768' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YB5YRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z36GDV' => 'arhy', 'AT1G08250' => 'ath', 'AT1G11790' => 'ath', 'AT2G27820' => 'ath', 'AT3G07630' => 'ath', 'AT3G44720' => 'ath', 'AT5G22630' => 'ath', 'ATR0693G304' => 'atr', 'ATR0794G109' => 'atr', 'ATR0820G120' => 'atr', 'ATR1159G064' => 'atr', 'Atru.chr10.2239' => 'acertr', 'Atru.chr3.3371' => 'acertr', 'Atru.chr6.3202' => 'acertr', 'AUR62006499' => 'cqu', 'AUR62012718' => 'cqu', 'AUR62021938' => 'cqu', 'AUR62023932' => 'cqu', 'AUR62025034' => 'cqu', 'AUR62025035' => 'cqu', 'AUR62038307' => 'cqu', 'AUR62043466' => 'cqu', 'BcaB02g10748' => 'bca', 'BcaB03g13231' => 'bca', 'BcaB03g14689' => 'bca', 'BcaB05g22716' => 'bca', 'BcaB06g28172' => 'bca', 'BcaB08g36413' => 'bca', 'BcaC01g02186' => 'bca', 'BcaC01g04272' => 'bca', 'BcaC02g08080' => 'bca', 'BcaC02g08227' => 'bca', 'BcaC03g13901' => 'bca', 'BcaC04g19593' => 'bca', 'BcaC04g20874' => 'bca', 'BcaC05g29557' => 'bca', 'BcaC06g35505' => 'bca', 'BcaC07g41954' => 'bca', 'BcaC07g41955' => 'bca', 'BcaC07g41956' => 'bca', 'BcaC07g42519' => 'bca', 'BcaC07g42520' => 'bca', 'BcaC07g42523' => 'bca', 'BcaC07g42524' => 'bca', 'BcaC07g42525' => 'bca', 'BcaC08g47480' => 'bca', 'BcaC08g47481' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00530' => 'bna', 'BolC2t07178H' => 'bol', 'BolC3t16567H' => 'bol', 'BolC4t27234H' => 'bol', 'BolC5t29728H' => 'bol', 'BolC5t34622H' => 'bol', 'BolC6t40321H' => 'bol', 'BolC7t42028H' => 'bol', 'BolC8t49125H' => 'bol', 'BolC8t52538H' => 'bol', 'BolC8t52539H' => 'bol', 'BolC9t56681H' => 'bol', 'BolC9t58266H' => 'bol', 'BolSC21t60294H' => 'bol', 'BraA02t05670Z' => 'bra', 'BraA03t12716Z' => 'bra', 'BraA04t17685Z' => 'bra', 'BraA05t22788Z' => 'bra', 'BraA06t24032Z' => 'bra', 'BraA06t25625Z' => 'bra', 'BraA07t27930Z' => 'bra', 'BraA08t35242Z' => 'bra', 'BraA09t38609Z' => 'bra', 'BraA10t43905Z' => 'bra', 'C02p11060' => 'bna', 'C03p42990' => 'bna', 'C03p67310' => 'bna', 'C04p56990' => 'bna', 'C04p58660' => 'bna', 'C05p09890' => 'bna', 'C05p59680' => 'bna', 'C06p19830' => 'bna', 'C06p53040' => 'bna', 'C07p15230' => 'bna', 'C08p50070' => 'bna', 'C08p50090' => 'bna', 'C09p38330' => 'bna', 'C09p53940' => 'bna', 'CAN.G1014.1' => 'can', 'CAN.G644.30' => 'can', 'CAN.G84.47' => 'can', 'CAN.G919.8' => 'can', 'CANSAT54G0113' => 'cansat', 'CANSAT54G1286' => 'cansat', 'CANSAT64G1020' => 'cansat', 'CARHR008080' => 'chi', 'CARHR008090' => 'chi', 'CARHR012130' => 'chi', 'CARHR038390' => 'chi', 'CARHR082330' => 'chi', 'CARHR120520' => 'chi', 'CARHR151470' => 'chi', 'CARHR190950' => 'chi', 'Carub.0001s0760' => 'cru', 'Carub.0001s1146' => 'cru', 'Carub.0003s0721' => 'cru', 'Carub.0004s0858' => 'cru', 'Carub.0005s1040' => 'cru', 'Carub.0006s2035' => 'cru', 'Carub.0015s0005' => 'cru', 'Ca_01607_v3' => 'car', 'Ca_01677_v3' => 'car', 'Ca_06087_v3' => 'car', 'Ca_19238_v3' => 'car', 'Ca_19373_v3' => 'car', 'Ca_21079_v3' => 'car', 'CBR_g54016' => 'cbr', 'CBR_g54018' => 'cbr', 'CBR_g54020' => 'cbr', 'Cc01_g09780' => 'ccan', 'Cc01_g11680' => 'ccan', 'Cc02_g15610' => 'ccan', 'Cc05_g04350' => 'ccan', 'Cc09_g01580' => 'ccan', 'CDE01G0795' => 'cde', 'CDE02G2024' => 'cde', 'CDE02G2260' => 'cde', 'CDE02G4561' => 'cde', 'CDE05G2733' => 'cde', 'CDE05G3422' => 'cde', 'CDE06G2003' => 'cde', 'CDE08G0576' => 'cde', 'CDE09G0048' => 'cde', 'CDE11G0805' => 'cde', 'Cfa003644' => 'cfa', 'Cfa006290' => 'cfa', 'Cfa010080' => 'cfa', 'Cfa011376' => 'cfa', 'Cfa011576' => 'cfa', 'Cfa011577' => 'cfa', 'Cfa014389' => 'cfa', 'Ciclev10006044m.g' => 'ccl', 'Ciclev10006954m.g' => 'ccl', 'Ciclev10015131m.g' => 'ccl', 'Ciclev10015580m.g' => 'ccl', 'Ciclev10028359m.g' => 'ccl', 'Ciclev10028573m.g' => 'ccl', 'CiPaw.03G159300' => 'cil', 'CiPaw.04G115100' => 'cil', 'CiPaw.09G092800' => 'cil', 'CiPaw.10G071800' => 'cil', 'CiPaw.13G105800' => 'cil', 'CiPaw.13G141000' => 'cil', 'CiPaw.14G103400' => 'cil', 'ClCG01G012700' => 'cla', 'ClCG01G012720' => 'cla', 'ClCG01G021920' => 'cla', 'ClCG02G008870' => 'cla', 'ClCG02G020840' => 'cla', 'ClCG02G021930' => 'cla', 'COL.COLO4_19302' => 'col', 'COL.COLO4_25262' => 'col', 'COL.COLO4_31788' => 'col', 'Cpa.g.c34684' => 'cpa', 'Cpa.g.c36520.1' => 'cpa', 'Cpa.g.c45626' => 'cpa', 'Cpa.g.sc121.17' => 'cpa', 'Cpa.g.sc13.22' => 'cpa', 'Cpa.g.sc87.88' => 'cpa', 'Cre06.g261800' => 'cre', 'CsaV3_1G014500' => 'csa', 'CsaV3_1G014510' => 'csa', 'CsaV3_2G034880' => 'csa', 'CsaV3_6G014760' => 'csa', 'CsaV3_6G021500' => 'csa', 'CsaV3_6G048980' => 'csa', 'CSS0002511' => 'camsi', 'CSS0007556' => 'camsi', 'CSS0008532' => 'camsi', 'CSS0009709' => 'camsi', 'CSS0010486' => 'camsi', 'CSS0016768' => 'camsi', 'CSS0023512' => 'camsi', 'CSS0025341' => 'camsi', 'CSS0027999' => 'camsi', 'CSS0028944' => 'camsi', 'CSS0032292' => 'camsi', 'CSS0032464' => 'camsi', 'CSS0037153' => 'camsi', 'CSS0039256' => 'camsi', 'CSS0048392' => 'camsi', 'CSS0050458' => 'camsi', 'DCAR_004224' => 'dca', 'DCAR_006147' => 'dca', 'DCAR_006465' => 'dca', 'DCAR_008159' => 'dca', 'DCAR_012164' => 'dca', 'DCAR_019764' => 'dca', 'Dinv05418' => 'din', 'Dinv10839' => 'din', 'Dinv12521' => 'din', 'Dinv13900' => 'din', 'Dinv29426' => 'din', 'Duzib150G0263' => 'dzi', 'Duzib168G1178' => 'dzi', 'Duzib168G1924' => 'dzi', 'Duzib170G0299' => 'dzi', 'Duzib170G0813' => 'dzi', 'Duzib235G1128' => 'dzi', 'Duzib248G1060' => 'dzi', 'ECA232G1910' => 'eca', 'ECA233G4621' => 'eca', 'ECA238G1216' => 'eca', 'ECA238G1784' => 'eca', 'ECA248G1242' => 'eca', 'EL10Ac8g20071' => 'bvu', 'EL10Ac9g21086' => 'bvu', 'EL10Ac9g22407' => 'bvu', 'EL10Ac9g22412' => 'bvu', 'Eucgr.A01119' => 'egr', 'Eucgr.E04043' => 'egr', 'Eucgr.J00428' => 'egr', 'Eucgr.J00958' => 'egr', 'FAN11G3091' => 'fan', 'FAN11G3651' => 'fan', 'FAN16G2566' => 'fan', 'FAN21G3155' => 'fan', 'FAN21G3400' => 'fan', 'FAN21G3543' => 'fan', 'FAN25G0234' => 'fan', 'FAN25G1422' => 'fan', 'FAN25G3392' => 'fan', 'FvH4_3g01940' => 'fve', 'FvH4_3g29870' => 'fve', 'FvH4_3g33680' => 'fve', 'Glyma.09G004200' => 'gma', 'Glyma.11G151288' => 'gma', 'Glyma.11G189100' => 'gma', 'Glyma.12G072500' => 'gma', 'Glyma.12G085500' => 'gma', 'Glyma.12G181800' => 'gma', 'Glyma.12G193000' => 'gma', 'Glyma.13G309300' => 'gma', 'Glyma.13G319000' => 'gma', 'Glyma.17G012600' => 'gma', 'Gohir.A06G148600' => 'ghi', 'Gohir.A07G115800' => 'ghi', 'Gohir.A08G003600' => 'ghi', 'Gohir.A09G093300' => 'ghi', 'Gohir.A09G105400' => 'ghi', 'Gohir.A09G105500' => 'ghi', 'Gohir.D06G154600' => 'ghi', 'Gohir.D07G120200' => 'ghi', 'Gohir.D08G013900' => 'ghi', 'Gohir.D09G093100' => 'ghi', 'Gohir.D09G102200' => 'ghi', 'Gohir.D09G102300' => 'ghi', 'Gorai.001G129400' => 'gra', 'Gorai.004G008200' => 'gra', 'Gorai.006G109800' => 'gra', 'Gorai.006G119500' => 'gra', 'Gorai.006G121300' => 'gra', 'Gorai.010G180700' => 'gra', 'GSVIVG01012716001' => 'vvi', 'GSVIVG01025118001' => 'vvi', 'GSVIVG01030439001' => 'vvi', 'GSVIVG01031397001' => 'vvi', 'HanXRQChr01g0004201' => 'han', 'HanXRQChr02g0054941' => 'han', 'HanXRQChr05g0141811' => 'han', 'HanXRQChr07g0197751' => 'han', 'HanXRQChr11g0346691' => 'han', 'HanXRQChr13g0396971' => 'han', 'HanXRQChr14g0432951' => 'han', 'HanXRQChr14g0452001' => 'han', 'HanXRQChr15g0496681' => 'han', 'HanXRQChr17g0557491' => 'han', 'HanXRQChr17g0557501' => 'han', 'Haze_06809' => 'cav', 'Haze_12852' => 'cav', 'Haze_15850' => 'cav', 'Haze_23446' => 'cav', 'Haze_23942' => 'cav', 'Haze_23943' => 'cav', 'Hma1.2p1_0091F.1_g046450' => 'hma', 'Hma1.2p1_0128F.1_g059910' => 'hma', 'Hma1.2p1_0249F.1_g102260' => 'hma', 'Hma1.2p1_0453F.1_g156190' => 'hma', 'Hma1.2p1_0695F.1_g204380' => 'hma', 'Hma1.2p1_0749F.1_g212650' => 'hma', 'Hma1.2p1_2156F.1_g315420' => 'hma', 'Hma1.2p1_2686F.1_g326940' => 'hma', 'HPP92_006428' => 'vpl', 'HPP92_012069' => 'vpl', 'HPP92_014129' => 'vpl', 'HPP92_014133' => 'vpl', 'HPP92_017315' => 'vpl', 'HPP92_026445' => 'vpl', 'HPP92_026446' => 'vpl', 'Hund00774' => 'sun', 'Hund07682' => 'sun', 'Hund21413' => 'sun', 'Hund23462' => 'sun', 'Hund23463' => 'sun', 'Lalb_Chr03g0027911' => 'lal', 'Lalb_Chr13g0304271' => 'lal', 'Lalb_Chr19g0137471' => 'lal', 'Lalb_Chr22g0350651' => 'lal', 'Lalb_Chr24g0395151' => 'lal', 'Lj1A1231T40' => 'lonja', 'Lj1A221T48' => 'lonja', 'Lj1C924T12' => 'lonja', 'Lj2C993G6' => 'lonja', 'Lj3g0005790' => 'lja', 'Lj3g0015432' => 'lja', 'Lj3g0017722' => 'lja', 'Lj3g0018497' => 'lja', 'Lj4g0025071' => 'lja', 'Lsat_1_v5_gn_1_129680' => 'lsa', 'Lsat_1_v5_gn_2_25321' => 'lsa', 'Lsat_1_v5_gn_2_95461' => 'lsa', 'Lsat_1_v5_gn_4_159620' => 'lsa', 'Lsat_1_v5_gn_6_41301' => 'lsa', 'Lsat_1_v5_gn_6_74660' => 'lsa', 'Lsat_1_v5_gn_7_11520' => 'lsa', 'Lsat_1_v5_gn_9_67680' => 'lsa', 'Manes.04G008300' => 'mes', 'Manes.04G008400' => 'mes', 'Manes.04G026500' => 'mes', 'Manes.10G135300' => 'mes', 'Manes.11G157300' => 'mes', 'Manes.12G074000' => 'mes', 'Manes.16G006200' => 'mes', 'Manes.17G026400' => 'mes', 'Mapoly0024s0086' => 'mpo', 'Mapoly0024s0087' => 'mpo', 'Mapoly0071s0057' => 'mpo', 'Mapoly0204s0012' => 'mpo', 'MBI04_g37681_MAGBIO' => 'mbi', 'MBI05_g17779_MAGBIO' => 'mbi', 'MBI12_g31184_MAGBIO' => 'mbi', 'MBI17_g11083_MAGBIO' => 'mbi', 'MBI18_g03883_MAGBIO' => 'mbi', 'MBI18_g28940_MAGBIO' => 'mbi', 'MCO01G690' => 'mco', 'MD03G1109900' => 'mdo', 'MD03G1134800' => 'mdo', 'MD05G1348000' => 'mdo', 'MD10G1322400' => 'mdo', 'MD11G1123300' => 'mdo', 'MD11G1157600' => 'mdo', 'Medtr2g084875' => 'mtr', 'Medtr2g088130' => 'mtr', 'Medtr4g055310' => 'mtr', 'Medtr4g061070' => 'mtr', 'Medtr4g132250' => 'mtr', 'MELO3C004795.2' => 'cme', 'MELO3C004797.2' => 'cme', 'MELO3C007396.2' => 'cme', 'MELO3C019277.2' => 'cme', 'MELO3C021449.2' => 'cme', 'MELO3C025736.2' => 'cme', 'Migut.D02175' => 'egut', 'Migut.H01573' => 'egut', 'Migut.M01327' => 'egut', 'Migut.N02513' => 'egut', 'MSTRG.14638' => 'ama', 'MSTRG.18632' => 'ama', 'MSTRG.7203' => 'ama', 'Nitab4.5_0000533g0140' => 'nta', 'Nitab4.5_0000888g0150' => 'nta', 'Nitab4.5_0001453g0040' => 'nta', 'Nitab4.5_0002827g0090' => 'nta', 'Nitab4.5_0003082g0040' => 'nta', 'Nitab4.5_0007799g0040' => 'nta', 'Nitab4.5_0008983g0010' => 'nta', 'Nitab4.5_0009017g0020' => 'nta', 'Nn1g02132' => 'nnu', 'Nn1g03492' => 'nnu', 'Nn1g03493' => 'nnu', 'Nn1g03494' => 'nnu', 'Nn1g07164' => 'nnu', 'Nn1g07291' => 'nnu', 'Nn2g10655' => 'nnu', 'Nn2g11652' => 'nnu', 'Nn2g14008' => 'nnu', 'Nn3g17476' => 'nnu', 'Nn3g17477' => 'nnu', 'Nn4g22370' => 'nnu', 'Nn4g25255' => 'nnu', 'Nn5g27755' => 'nnu', 'Nn6g34260' => 'nnu', 'Nn6g35041' => 'nnu', 'Oeu005924.1' => 'oeu', 'Oeu008383.1' => 'oeu', 'Oeu014928.1' => 'oeu', 'Oeu019889.1' => 'oeu', 'Oeu022271.1' => 'oeu', 'Oeu025271.1' => 'oeu', 'Oeu036302.1' => 'oeu', 'Oeu044100.1' => 'oeu', 'Os01g0528300' => 'osa', 'Os03g0286200' => 'osa', 'Os04g0406600' => 'osa', 'Os07g0512000' => 'osa', 'Os07g0694600' => 'osa', 'Os08g0411000' => 'osa', 'Os09g0565700' => 'osa', 'Os09g0566050' => 'osa', 'Os10g0523700' => 'osa', 'Peaxi162Scf00002g00514' => 'pax', 'Peaxi162Scf00047g01817' => 'pax', 'Peaxi162Scf00114g00001' => 'pax', 'Peaxi162Scf00147g00613' => 'pax', 'Peaxi162Scf00389g00425' => 'pax', 'PGR042G1139' => 'pgr', 'PGR042G3273' => 'pgr', 'PGR102G2180' => 'pgr', 'PGR119G0234' => 'pgr', 'PGR119G0668' => 'pgr', 'PGSC0003DMG400007122' => 'stu', 'PGSC0003DMG400016478' => 'stu', 'PGSC0003DMG400025374' => 'stu', 'PGSC0003DMG400026536' => 'stu', 'Phvul.003G079600' => 'pvu', 'Phvul.005G115600' => 'pvu', 'Phvul.005G127100' => 'pvu', 'Phvul.006G149500' => 'pvu', 'Phvul.006G149600' => 'pvu', 'Phvul.011G071800' => 'pvu', 'Phvul.011G090400' => 'pvu', 'Potri.004G013400' => 'ptr', 'Potri.004G188100' => 'ptr', 'Potri.008G195500' => 'ptr', 'Potri.009G148800' => 'ptr', 'Potri.011G004700' => 'ptr', 'Pp3c17_22810' => 'ppa', 'Pp3c18_4480' => 'ppa', 'Pp3c19_13030' => 'ppa', 'Pp3c1_33620' => 'ppa', 'Pp3c2_9380' => 'ppa', 'PRCOL_00001023' => 'pco', 'Prupe.3G216300' => 'ppe', 'Prupe.4G019500' => 'ppe', 'Prupe.6G092500' => 'ppe', 'Prupe.6G119200' => 'ppe', 'Psat0s1945g0080' => 'psa', 'Psat0s4167g0040' => 'psa', 'Psat1g185800' => 'psa', 'Psat4g006440' => 'psa', 'Psat4g006480' => 'psa', 'Psat4g168120' => 'psa', 'Psat5g255680' => 'psa', 'Psat5g261760' => 'psa', 'Psat7g222120' => 'psa', 'PSO063G7252' => 'pso', 'PSO170G4778' => 'pso', 'PSO210G2249' => 'pso', 'PSO339G2411' => 'pso', 'PSO339G2457' => 'pso', 'PSO339G2854' => 'pso', 'PSO339G4288' => 'pso', 'PSO339G4615' => 'pso', 'PSO384G2796' => 'pso', 'PSO384G2940' => 'pso', 'PSO384G4227' => 'pso', 'PSO478G1425' => 'pso', 'PSO541G3863' => 'pso', 'PSO675G0507' => 'pso', 'PSO782G0338' => 'pso', 'PSO832G0644' => 'pso', 'QL01p013664' => 'qlo', 'QL01p036598' => 'qlo', 'QL05p072984' => 'qlo', 'QL08p005768' => 'qlo', 'QL08p032743' => 'qlo', 'QL93p0073_0439' => 'qlo', 'QL93p0073_0444' => 'qlo', 'RcHm_v2.0_Chr5g0002851' => 'rch', 'RcHm_v2.0_Chr5g0055201' => 'rch', 'RcHm_v2.0_Chr5g0061191' => 'rch', 'RcHm_v2.0_Chr7g0203231' => 'rch', 'Rhsim01G0208100' => 'rsi', 'Rhsim01G0208200' => 'rsi', 'Rhsim02G0106500' => 'rsi', 'Rhsim03G0107900' => 'rsi', 'Rhsim06G0163400' => 'rsi', 'Rhsim13G0105200' => 'rsi', 'Sabra04G0006300' => 'sbr', 'Sabra04G0127000' => 'sbr', 'Sabra08G0148700' => 'sbr', 'Sabra09G0117400' => 'sbr', 'SalBow1G3326' => 'sbo', 'SalBow3G3228' => 'sbo', 'SalBow6G1634' => 'sbo', 'SalBow6G3603' => 'sbo', 'SalBow6G5266' => 'sbo', 'SalBow7G2265' => 'sbo', 'SalBow8G0850' => 'sbo', 'SalBow8G2592' => 'sbo', 'Sc05g0009240' => 'sci', 'Sc12g0002300' => 'sci', 'Sc21g0000100' => 'sci', 'Sc21g0004720' => 'sci', 'Sed0002949' => 'sed', 'Sed0004114' => 'sed', 'Sed0004306' => 'sed', 'Sed0006172' => 'sed', 'Sed0008413' => 'sed', 'Sed0013809' => 'sed', 'Sed0019556' => 'sed', 'SEGI_03570' => 'sgi', 'SEGI_07859' => 'sgi', 'SEGI_15042' => 'sgi', 'SEGI_16263' => 'sgi', 'SEGI_16552' => 'sgi', 'SEGI_24331' => 'sgi', 'SEGI_27316' => 'sgi', 'SEGI_29521' => 'sgi', 'SEGI_41342' => 'sgi', 'SGA_v2.0_scaffold27G11617' => 'sas', 'SGA_v2.0_scaffold316G48428' => 'sas', 'SGA_v2.0_scaffold49G18261' => 'sas', 'SGA_v2.0_scaffold7G03831' => 'sas', 'SGA_v2.0_scaffold93G28359' => 'sas', 'SHI02210' => 'shi', 'SHI06028' => 'shi', 'SHI06321' => 'shi', 'SMO111G0012' => 'smo', 'SMO228G0080' => 'smo', 'SMO356G0756' => 'smo', 'Solyc02g080620.3' => 'sly', 'Solyc06g074530.1' => 'sly', 'Solyc11g066890.1' => 'sly', 'Solyc11g072520.3' => 'sly', 'Sopen02g025330' => 'spe', 'Sopen06g031000' => 'spe', 'Sopen09g008240' => 'spe', 'Sopen09g025210' => 'spe', 'Sopen11g026600' => 'spe', 'Sopen11g030170' => 'spe', 'Sp1g10420' => 'spa', 'Sp3g06570' => 'spa', 'Sp4g10660' => 'spa', 'Sp5g16460' => 'spa', 'Sp6g22710' => 'spa', 'TAR365G0112' => 'tar', 'TAR369G0717' => 'tar', 'TAR374G0976' => 'tar', 'TAR623G1128' => 'tar', 'TAR626G1937' => 'tar', 'TAR627G0123' => 'tar', 'TAR628G0305' => 'tar', 'TAR636G1176' => 'tar', 'TAR636G2442' => 'tar', 'THA.LOC104800556' => 'tha', 'THA.LOC104809501' => 'tha', 'THA.LOC104815126' => 'tha', 'THA.LOC104815732' => 'tha', 'THA.LOC104823528' => 'tha', 'Thecc.02G365600' => 'tca', 'Thecc.06G222300' => 'tca', 'Thecc.09G261800' => 'tca', 'Thecc.09G291400' => 'tca', 'Thhalv10003028m.g' => 'esa', 'Thhalv10007886m.g' => 'esa', 'Thhalv10016085m.g' => 'esa', 'Thhalv10016681m.g' => 'esa', 'Thhalv10020951m.g' => 'esa', 'TPR.G15598' => 'tpr', 'TPR.G29305' => 'tpr', 'TPR.G32395' => 'tpr', 'TPR.G36998' => 'tpr', 'TPR.G4227' => 'tpr', 'TWI18G1433' => 'twi', 'TWI31G0755' => 'twi', 'TWI38G0912' => 'twi', 'TWI75G1097' => 'twi', 'TWI75G1619' => 'twi', 'TWI79G1336' => 'twi', 'unitig_0.g943' => 'ugi', 'unitig_0.g944' => 'ugi', 'unitig_22.g6646' => 'ugi', 'unitig_37.g12681' => 'ugi', 'unitig_8.g3290' => 'ugi', 'vmacro03278' => 'vma', 'vmacro12197' => 'vma', 'vmacro14478' => 'vma', 'vmacro15787' => 'vma', 'vmacro15789' => 'vma', 'vmacro15790' => 'vma', 'vmacro15806' => 'vma', 'vmacro22907' => 'vma', 'vmacro22908' => 'vma', 'vmacro22909' => 'vma', 'vmacro23108' => 'vma', 'VMungo0540G0540' => 'vmu', 'VMungo0540G2468' => 'vmu', 'VMungo1080G0390' => 'vmu', 'VMungo1080G1165' => 'vmu', 'VMungo1127G0170' => 'vmu', 'VMungo1127G2099' => 'vmu', 'VMungo1215G3013' => 'vmu', 'Zm00001eb013110' => 'zma', 'Zm00001eb084260' => 'zma', 'Zm00001eb096110' => 'zma', 'Zm00001eb217510' => 'zma', 'Zm00001eb322550' => 'zma', 'Zm00001eb390770' => 'zma', 'Zm00001eb397170' => 'zma', 'Zm00001eb404610' => 'zma', 'Zm00001eb421790' => 'zma' ), 'gf_id' => 'HOM05D000911', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000911' ), 'data_identifier' => 'HOM05D000911', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000911', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27780' => 'bna', 'A03p35380' => 'bna', 'A04p21160' => 'bna', 'A05p40570' => 'bna', 'A06p26900' => 'bna', 'A08p33230' => 'bna', 'A09p65960' => 'bna', 'A10p18290' => 'bna', 'Aa31LG1G12990' => 'aar', 'Aa31LG1G2980' => 'aar', 'Aa31LG4G14320' => 'aar', 'Aa31LG7G11800' => 'aar', 'Aa31sc36G50' => 'aar', 'Aa31sc36G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3721' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5459' => 'aag', 'Actinidia03028' => 'ach', 'Actinidia03753' => 'ach', 'Actinidia04187' => 'ach', 'Actinidia05509' => 'ach', 'Actinidia24180' => 'ach', 'Actinidia26906' => 'ach', 'Actinidia37097' => 'ach', 'Actinidia38249' => 'ach', 'Ah.01g003470' => 'amhyb', 'Ah.01g004580' => 'amhyb', 'Ah.01g014850' => 'amhyb', 'Ah.01g016830' => 'amhyb', 'Ah.14g088000' => 'amhyb', 'AL1G22980' => 'aly', 'AL3G18990' => 'aly', 'AL4G22440' => 'aly', 'AL4G33180' => 'aly', 'AL5G22920' => 'aly', 'AL6G33660' => 'aly', 'AL8G20720' => 'aly', 'Aqoxy1G00935' => 'aox', 'Aqoxy1G02094' => 'aox', 'Aqoxy2G01239' => 'aox', 'Aqoxy4G01870' => 'aox', 'Aqoxy7G00450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.36ZVTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71EM27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5D6C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH3WRE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3NCM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RIM768' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YB5YRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z36GDV' => 'arhy', 'AT1G08250' => 'ath', 'AT1G11790' => 'ath', 'AT2G27820' => 'ath', 'AT3G07630' => 'ath', 'AT3G44720' => 'ath', 'AT5G22630' => 'ath', 'ATR0693G304' => 'atr', 'ATR0794G109' => 'atr', 'ATR0820G120' => 'atr', 'ATR1159G064' => 'atr', 'Atru.chr10.2239' => 'acertr', 'Atru.chr3.3371' => 'acertr', 'Atru.chr6.3202' => 'acertr', 'AUR62006499' => 'cqu', 'AUR62012718' => 'cqu', 'AUR62021938' => 'cqu', 'AUR62023932' => 'cqu', 'AUR62025034' => 'cqu', 'AUR62025035' => 'cqu', 'AUR62038307' => 'cqu', 'AUR62043466' => 'cqu', 'BcaB02g10748' => 'bca', 'BcaB03g13231' => 'bca', 'BcaB03g14689' => 'bca', 'BcaB05g22716' => 'bca', 'BcaB06g28172' => 'bca', 'BcaB08g36413' => 'bca', 'BcaC01g02186' => 'bca', 'BcaC01g04272' => 'bca', 'BcaC02g08080' => 'bca', 'BcaC02g08227' => 'bca', 'BcaC03g13901' => 'bca', 'BcaC04g19593' => 'bca', 'BcaC04g20874' => 'bca', 'BcaC05g29557' => 'bca', 'BcaC06g35505' => 'bca', 'BcaC07g41954' => 'bca', 'BcaC07g41955' => 'bca', 'BcaC07g41956' => 'bca', 'BcaC07g42519' => 'bca', 'BcaC07g42520' => 'bca', 'BcaC07g42523' => 'bca', 'BcaC07g42524' => 'bca', 'BcaC07g42525' => 'bca', 'BcaC08g47480' => 'bca', 'BcaC08g47481' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00530' => 'bna', 'BolC2t07178H' => 'bol', 'BolC3t16567H' => 'bol', 'BolC4t27234H' => 'bol', 'BolC5t29728H' => 'bol', 'BolC5t34622H' => 'bol', 'BolC6t40321H' => 'bol', 'BolC7t42028H' => 'bol', 'BolC8t49125H' => 'bol', 'BolC8t52538H' => 'bol', 'BolC8t52539H' => 'bol', 'BolC9t56681H' => 'bol', 'BolC9t58266H' => 'bol', 'BolSC21t60294H' => 'bol', 'BraA02t05670Z' => 'bra', 'BraA03t12716Z' => 'bra', 'BraA04t17685Z' => 'bra', 'BraA05t22788Z' => 'bra', 'BraA06t24032Z' => 'bra', 'BraA06t25625Z' => 'bra', 'BraA07t27930Z' => 'bra', 'BraA08t35242Z' => 'bra', 'BraA09t38609Z' => 'bra', 'BraA10t43905Z' => 'bra', 'C02p11060' => 'bna', 'C03p42990' => 'bna', 'C03p67310' => 'bna', 'C04p56990' => 'bna', 'C04p58660' => 'bna', 'C05p09890' => 'bna', 'C05p59680' => 'bna', 'C06p19830' => 'bna', 'C06p53040' => 'bna', 'C07p15230' => 'bna', 'C08p50070' => 'bna', 'C08p50090' => 'bna', 'C09p38330' => 'bna', 'C09p53940' => 'bna', 'CAN.G1014.1' => 'can', 'CAN.G644.30' => 'can', 'CAN.G84.47' => 'can', 'CAN.G919.8' => 'can', 'CANSAT54G0113' => 'cansat', 'CANSAT54G1286' => 'cansat', 'CANSAT64G1020' => 'cansat', 'CARHR008080' => 'chi', 'CARHR008090' => 'chi', 'CARHR012130' => 'chi', 'CARHR038390' => 'chi', 'CARHR082330' => 'chi', 'CARHR120520' => 'chi', 'CARHR151470' => 'chi', 'CARHR190950' => 'chi', 'Carub.0001s0760' => 'cru', 'Carub.0001s1146' => 'cru', 'Carub.0003s0721' => 'cru', 'Carub.0004s0858' => 'cru', 'Carub.0005s1040' => 'cru', 'Carub.0006s2035' => 'cru', 'Carub.0015s0005' => 'cru', 'Ca_01607_v3' => 'car', 'Ca_01677_v3' => 'car', 'Ca_06087_v3' => 'car', 'Ca_19238_v3' => 'car', 'Ca_19373_v3' => 'car', 'Ca_21079_v3' => 'car', 'CBR_g54016' => 'cbr', 'CBR_g54018' => 'cbr', 'CBR_g54020' => 'cbr', 'Cc01_g09780' => 'ccan', 'Cc01_g11680' => 'ccan', 'Cc02_g15610' => 'ccan', 'Cc05_g04350' => 'ccan', 'Cc09_g01580' => 'ccan', 'CDE01G0795' => 'cde', 'CDE02G2024' => 'cde', 'CDE02G2260' => 'cde', 'CDE02G4561' => 'cde', 'CDE05G2733' => 'cde', 'CDE05G3422' => 'cde', 'CDE06G2003' => 'cde', 'CDE08G0576' => 'cde', 'CDE09G0048' => 'cde', 'CDE11G0805' => 'cde', 'Cfa003644' => 'cfa', 'Cfa006290' => 'cfa', 'Cfa010080' => 'cfa', 'Cfa011376' => 'cfa', 'Cfa011576' => 'cfa', 'Cfa011577' => 'cfa', 'Cfa014389' => 'cfa', 'Ciclev10006044m.g' => 'ccl', 'Ciclev10006954m.g' => 'ccl', 'Ciclev10015131m.g' => 'ccl', 'Ciclev10015580m.g' => 'ccl', 'Ciclev10028359m.g' => 'ccl', 'Ciclev10028573m.g' => 'ccl', 'CiPaw.03G159300' => 'cil', 'CiPaw.04G115100' => 'cil', 'CiPaw.09G092800' => 'cil', 'CiPaw.10G071800' => 'cil', 'CiPaw.13G105800' => 'cil', 'CiPaw.13G141000' => 'cil', 'CiPaw.14G103400' => 'cil', 'ClCG01G012700' => 'cla', 'ClCG01G012720' => 'cla', 'ClCG01G021920' => 'cla', 'ClCG02G008870' => 'cla', 'ClCG02G020840' => 'cla', 'ClCG02G021930' => 'cla', 'COL.COLO4_19302' => 'col', 'COL.COLO4_25262' => 'col', 'COL.COLO4_31788' => 'col', 'Cpa.g.c34684' => 'cpa', 'Cpa.g.c36520.1' => 'cpa', 'Cpa.g.c45626' => 'cpa', 'Cpa.g.sc121.17' => 'cpa', 'Cpa.g.sc13.22' => 'cpa', 'Cpa.g.sc87.88' => 'cpa', 'Cre06.g261800' => 'cre', 'CsaV3_1G014500' => 'csa', 'CsaV3_1G014510' => 'csa', 'CsaV3_2G034880' => 'csa', 'CsaV3_6G014760' => 'csa', 'CsaV3_6G021500' => 'csa', 'CsaV3_6G048980' => 'csa', 'CSS0002511' => 'camsi', 'CSS0007556' => 'camsi', 'CSS0008532' => 'camsi', 'CSS0009709' => 'camsi', 'CSS0010486' => 'camsi', 'CSS0016768' => 'camsi', 'CSS0023512' => 'camsi', 'CSS0025341' => 'camsi', 'CSS0027999' => 'camsi', 'CSS0028944' => 'camsi', 'CSS0032292' => 'camsi', 'CSS0032464' => 'camsi', 'CSS0037153' => 'camsi', 'CSS0039256' => 'camsi', 'CSS0048392' => 'camsi', 'CSS0050458' => 'camsi', 'DCAR_004224' => 'dca', 'DCAR_006147' => 'dca', 'DCAR_006465' => 'dca', 'DCAR_008159' => 'dca', 'DCAR_012164' => 'dca', 'DCAR_019764' => 'dca', 'Dinv05418' => 'din', 'Dinv10839' => 'din', 'Dinv12521' => 'din', 'Dinv13900' => 'din', 'Dinv29426' => 'din', 'Duzib150G0263' => 'dzi', 'Duzib168G1178' => 'dzi', 'Duzib168G1924' => 'dzi', 'Duzib170G0299' => 'dzi', 'Duzib170G0813' => 'dzi', 'Duzib235G1128' => 'dzi', 'Duzib248G1060' => 'dzi', 'ECA232G1910' => 'eca', 'ECA233G4621' => 'eca', 'ECA238G1216' => 'eca', 'ECA238G1784' => 'eca', 'ECA248G1242' => 'eca', 'EL10Ac8g20071' => 'bvu', 'EL10Ac9g21086' => 'bvu', 'EL10Ac9g22407' => 'bvu', 'EL10Ac9g22412' => 'bvu', 'Eucgr.A01119' => 'egr', 'Eucgr.E04043' => 'egr', 'Eucgr.J00428' => 'egr', 'Eucgr.J00958' => 'egr', 'FAN11G3091' => 'fan', 'FAN11G3651' => 'fan', 'FAN16G2566' => 'fan', 'FAN21G3155' => 'fan', 'FAN21G3400' => 'fan', 'FAN21G3543' => 'fan', 'FAN25G0234' => 'fan', 'FAN25G1422' => 'fan', 'FAN25G3392' => 'fan', 'FvH4_3g01940' => 'fve', 'FvH4_3g29870' => 'fve', 'FvH4_3g33680' => 'fve', 'Glyma.09G004200' => 'gma', 'Glyma.11G151288' => 'gma', 'Glyma.11G189100' => 'gma', 'Glyma.12G072500' => 'gma', 'Glyma.12G085500' => 'gma', 'Glyma.12G181800' => 'gma', 'Glyma.12G193000' => 'gma', 'Glyma.13G309300' => 'gma', 'Glyma.13G319000' => 'gma', 'Glyma.17G012600' => 'gma', 'Gohir.A06G148600' => 'ghi', 'Gohir.A07G115800' => 'ghi', 'Gohir.A08G003600' => 'ghi', 'Gohir.A09G093300' => 'ghi', 'Gohir.A09G105400' => 'ghi', 'Gohir.A09G105500' => 'ghi', 'Gohir.D06G154600' => 'ghi', 'Gohir.D07G120200' => 'ghi', 'Gohir.D08G013900' => 'ghi', 'Gohir.D09G093100' => 'ghi', 'Gohir.D09G102200' => 'ghi', 'Gohir.D09G102300' => 'ghi', 'Gorai.001G129400' => 'gra', 'Gorai.004G008200' => 'gra', 'Gorai.006G109800' => 'gra', 'Gorai.006G119500' => 'gra', 'Gorai.006G121300' => 'gra', 'Gorai.010G180700' => 'gra', 'GSVIVG01012716001' => 'vvi', 'GSVIVG01025118001' => 'vvi', 'GSVIVG01030439001' => 'vvi', 'GSVIVG01031397001' => 'vvi', 'HanXRQChr01g0004201' => 'han', 'HanXRQChr02g0054941' => 'han', 'HanXRQChr05g0141811' => 'han', 'HanXRQChr07g0197751' => 'han', 'HanXRQChr11g0346691' => 'han', 'HanXRQChr13g0396971' => 'han', 'HanXRQChr14g0432951' => 'han', 'HanXRQChr14g0452001' => 'han', 'HanXRQChr15g0496681' => 'han', 'HanXRQChr17g0557491' => 'han', 'HanXRQChr17g0557501' => 'han', 'Haze_06809' => 'cav', 'Haze_12852' => 'cav', 'Haze_15850' => 'cav', 'Haze_23446' => 'cav', 'Haze_23942' => 'cav', 'Haze_23943' => 'cav', 'Hma1.2p1_0091F.1_g046450' => 'hma', 'Hma1.2p1_0128F.1_g059910' => 'hma', 'Hma1.2p1_0249F.1_g102260' => 'hma', 'Hma1.2p1_0453F.1_g156190' => 'hma', 'Hma1.2p1_0695F.1_g204380' => 'hma', 'Hma1.2p1_0749F.1_g212650' => 'hma', 'Hma1.2p1_2156F.1_g315420' => 'hma', 'Hma1.2p1_2686F.1_g326940' => 'hma', 'HPP92_006428' => 'vpl', 'HPP92_012069' => 'vpl', 'HPP92_014129' => 'vpl', 'HPP92_014133' => 'vpl', 'HPP92_017315' => 'vpl', 'HPP92_026445' => 'vpl', 'HPP92_026446' => 'vpl', 'Hund00774' => 'sun', 'Hund07682' => 'sun', 'Hund21413' => 'sun', 'Hund23462' => 'sun', 'Hund23463' => 'sun', 'Lalb_Chr03g0027911' => 'lal', 'Lalb_Chr13g0304271' => 'lal', 'Lalb_Chr19g0137471' => 'lal', 'Lalb_Chr22g0350651' => 'lal', 'Lalb_Chr24g0395151' => 'lal', 'Lj1A1231T40' => 'lonja', 'Lj1A221T48' => 'lonja', 'Lj1C924T12' => 'lonja', 'Lj2C993G6' => 'lonja', 'Lj3g0005790' => 'lja', 'Lj3g0015432' => 'lja', 'Lj3g0017722' => 'lja', 'Lj3g0018497' => 'lja', 'Lj4g0025071' => 'lja', 'Lsat_1_v5_gn_1_129680' => 'lsa', 'Lsat_1_v5_gn_2_25321' => 'lsa', 'Lsat_1_v5_gn_2_95461' => 'lsa', 'Lsat_1_v5_gn_4_159620' => 'lsa', 'Lsat_1_v5_gn_6_41301' => 'lsa', 'Lsat_1_v5_gn_6_74660' => 'lsa', 'Lsat_1_v5_gn_7_11520' => 'lsa', 'Lsat_1_v5_gn_9_67680' => 'lsa', 'Manes.04G008300' => 'mes', 'Manes.04G008400' => 'mes', 'Manes.04G026500' => 'mes', 'Manes.10G135300' => 'mes', 'Manes.11G157300' => 'mes', 'Manes.12G074000' => 'mes', 'Manes.16G006200' => 'mes', 'Manes.17G026400' => 'mes', 'Mapoly0024s0086' => 'mpo', 'Mapoly0024s0087' => 'mpo', 'Mapoly0071s0057' => 'mpo', 'Mapoly0204s0012' => 'mpo', 'MBI04_g37681_MAGBIO' => 'mbi', 'MBI05_g17779_MAGBIO' => 'mbi', 'MBI12_g31184_MAGBIO' => 'mbi', 'MBI17_g11083_MAGBIO' => 'mbi', 'MBI18_g03883_MAGBIO' => 'mbi', 'MBI18_g28940_MAGBIO' => 'mbi', 'MCO01G690' => 'mco', 'MD03G1109900' => 'mdo', 'MD03G1134800' => 'mdo', 'MD05G1348000' => 'mdo', 'MD10G1322400' => 'mdo', 'MD11G1123300' => 'mdo', 'MD11G1157600' => 'mdo', 'Medtr2g084875' => 'mtr', 'Medtr2g088130' => 'mtr', 'Medtr4g055310' => 'mtr', 'Medtr4g061070' => 'mtr', 'Medtr4g132250' => 'mtr', 'MELO3C004795.2' => 'cme', 'MELO3C004797.2' => 'cme', 'MELO3C007396.2' => 'cme', 'MELO3C019277.2' => 'cme', 'MELO3C021449.2' => 'cme', 'MELO3C025736.2' => 'cme', 'Migut.D02175' => 'egut', 'Migut.H01573' => 'egut', 'Migut.M01327' => 'egut', 'Migut.N02513' => 'egut', 'MSTRG.14638' => 'ama', 'MSTRG.18632' => 'ama', 'MSTRG.7203' => 'ama', 'Nitab4.5_0000533g0140' => 'nta', 'Nitab4.5_0000888g0150' => 'nta', 'Nitab4.5_0001453g0040' => 'nta', 'Nitab4.5_0002827g0090' => 'nta', 'Nitab4.5_0003082g0040' => 'nta', 'Nitab4.5_0007799g0040' => 'nta', 'Nitab4.5_0008983g0010' => 'nta', 'Nitab4.5_0009017g0020' => 'nta', 'Nn1g02132' => 'nnu', 'Nn1g03492' => 'nnu', 'Nn1g03493' => 'nnu', 'Nn1g03494' => 'nnu', 'Nn1g07164' => 'nnu', 'Nn1g07291' => 'nnu', 'Nn2g10655' => 'nnu', 'Nn2g11652' => 'nnu', 'Nn2g14008' => 'nnu', 'Nn3g17476' => 'nnu', 'Nn3g17477' => 'nnu', 'Nn4g22370' => 'nnu', 'Nn4g25255' => 'nnu', 'Nn5g27755' => 'nnu', 'Nn6g34260' => 'nnu', 'Nn6g35041' => 'nnu', 'Oeu005924.1' => 'oeu', 'Oeu008383.1' => 'oeu', 'Oeu014928.1' => 'oeu', 'Oeu019889.1' => 'oeu', 'Oeu022271.1' => 'oeu', 'Oeu025271.1' => 'oeu', 'Oeu036302.1' => 'oeu', 'Oeu044100.1' => 'oeu', 'Os01g0528300' => 'osa', 'Os03g0286200' => 'osa', 'Os04g0406600' => 'osa', 'Os07g0512000' => 'osa', 'Os07g0694600' => 'osa', 'Os08g0411000' => 'osa', 'Os09g0565700' => 'osa', 'Os09g0566050' => 'osa', 'Os10g0523700' => 'osa', 'Peaxi162Scf00002g00514' => 'pax', 'Peaxi162Scf00047g01817' => 'pax', 'Peaxi162Scf00114g00001' => 'pax', 'Peaxi162Scf00147g00613' => 'pax', 'Peaxi162Scf00389g00425' => 'pax', 'PGR042G1139' => 'pgr', 'PGR042G3273' => 'pgr', 'PGR102G2180' => 'pgr', 'PGR119G0234' => 'pgr', 'PGR119G0668' => 'pgr', 'PGSC0003DMG400007122' => 'stu', 'PGSC0003DMG400016478' => 'stu', 'PGSC0003DMG400025374' => 'stu', 'PGSC0003DMG400026536' => 'stu', 'Phvul.003G079600' => 'pvu', 'Phvul.005G115600' => 'pvu', 'Phvul.005G127100' => 'pvu', 'Phvul.006G149500' => 'pvu', 'Phvul.006G149600' => 'pvu', 'Phvul.011G071800' => 'pvu', 'Phvul.011G090400' => 'pvu', 'Potri.004G013400' => 'ptr', 'Potri.004G188100' => 'ptr', 'Potri.008G195500' => 'ptr', 'Potri.009G148800' => 'ptr', 'Potri.011G004700' => 'ptr', 'Pp3c17_22810' => 'ppa', 'Pp3c18_4480' => 'ppa', 'Pp3c19_13030' => 'ppa', 'Pp3c1_33620' => 'ppa', 'Pp3c2_9380' => 'ppa', 'PRCOL_00001023' => 'pco', 'Prupe.3G216300' => 'ppe', 'Prupe.4G019500' => 'ppe', 'Prupe.6G092500' => 'ppe', 'Prupe.6G119200' => 'ppe', 'Psat0s1945g0080' => 'psa', 'Psat0s4167g0040' => 'psa', 'Psat1g185800' => 'psa', 'Psat4g006440' => 'psa', 'Psat4g006480' => 'psa', 'Psat4g168120' => 'psa', 'Psat5g255680' => 'psa', 'Psat5g261760' => 'psa', 'Psat7g222120' => 'psa', 'PSO063G7252' => 'pso', 'PSO170G4778' => 'pso', 'PSO210G2249' => 'pso', 'PSO339G2411' => 'pso', 'PSO339G2457' => 'pso', 'PSO339G2854' => 'pso', 'PSO339G4288' => 'pso', 'PSO339G4615' => 'pso', 'PSO384G2796' => 'pso', 'PSO384G2940' => 'pso', 'PSO384G4227' => 'pso', 'PSO478G1425' => 'pso', 'PSO541G3863' => 'pso', 'PSO675G0507' => 'pso', 'PSO782G0338' => 'pso', 'PSO832G0644' => 'pso', 'QL01p013664' => 'qlo', 'QL01p036598' => 'qlo', 'QL05p072984' => 'qlo', 'QL08p005768' => 'qlo', 'QL08p032743' => 'qlo', 'QL93p0073_0439' => 'qlo', 'QL93p0073_0444' => 'qlo', 'RcHm_v2.0_Chr5g0002851' => 'rch', 'RcHm_v2.0_Chr5g0055201' => 'rch', 'RcHm_v2.0_Chr5g0061191' => 'rch', 'RcHm_v2.0_Chr7g0203231' => 'rch', 'Rhsim01G0208100' => 'rsi', 'Rhsim01G0208200' => 'rsi', 'Rhsim02G0106500' => 'rsi', 'Rhsim03G0107900' => 'rsi', 'Rhsim06G0163400' => 'rsi', 'Rhsim13G0105200' => 'rsi', 'Sabra04G0006300' => 'sbr', 'Sabra04G0127000' => 'sbr', 'Sabra08G0148700' => 'sbr', 'Sabra09G0117400' => 'sbr', 'SalBow1G3326' => 'sbo', 'SalBow3G3228' => 'sbo', 'SalBow6G1634' => 'sbo', 'SalBow6G3603' => 'sbo', 'SalBow6G5266' => 'sbo', 'SalBow7G2265' => 'sbo', 'SalBow8G0850' => 'sbo', 'SalBow8G2592' => 'sbo', 'Sc05g0009240' => 'sci', 'Sc12g0002300' => 'sci', 'Sc21g0000100' => 'sci', 'Sc21g0004720' => 'sci', 'Sed0002949' => 'sed', 'Sed0004114' => 'sed', 'Sed0004306' => 'sed', 'Sed0006172' => 'sed', 'Sed0008413' => 'sed', 'Sed0013809' => 'sed', 'Sed0019556' => 'sed', 'SEGI_03570' => 'sgi', 'SEGI_07859' => 'sgi', 'SEGI_15042' => 'sgi', 'SEGI_16263' => 'sgi', 'SEGI_16552' => 'sgi', 'SEGI_24331' => 'sgi', 'SEGI_27316' => 'sgi', 'SEGI_29521' => 'sgi', 'SEGI_41342' => 'sgi', 'SGA_v2.0_scaffold27G11617' => 'sas', 'SGA_v2.0_scaffold316G48428' => 'sas', 'SGA_v2.0_scaffold49G18261' => 'sas', 'SGA_v2.0_scaffold7G03831' => 'sas', 'SGA_v2.0_scaffold93G28359' => 'sas', 'SHI02210' => 'shi', 'SHI06028' => 'shi', 'SHI06321' => 'shi', 'SMO111G0012' => 'smo', 'SMO228G0080' => 'smo', 'SMO356G0756' => 'smo', 'Solyc02g080620.3' => 'sly', 'Solyc06g074530.1' => 'sly', 'Solyc11g066890.1' => 'sly', 'Solyc11g072520.3' => 'sly', 'Sopen02g025330' => 'spe', 'Sopen06g031000' => 'spe', 'Sopen09g008240' => 'spe', 'Sopen09g025210' => 'spe', 'Sopen11g026600' => 'spe', 'Sopen11g030170' => 'spe', 'Sp1g10420' => 'spa', 'Sp3g06570' => 'spa', 'Sp4g10660' => 'spa', 'Sp5g16460' => 'spa', 'Sp6g22710' => 'spa', 'TAR365G0112' => 'tar', 'TAR369G0717' => 'tar', 'TAR374G0976' => 'tar', 'TAR623G1128' => 'tar', 'TAR626G1937' => 'tar', 'TAR627G0123' => 'tar', 'TAR628G0305' => 'tar', 'TAR636G1176' => 'tar', 'TAR636G2442' => 'tar', 'THA.LOC104800556' => 'tha', 'THA.LOC104809501' => 'tha', 'THA.LOC104815126' => 'tha', 'THA.LOC104815732' => 'tha', 'THA.LOC104823528' => 'tha', 'Thecc.02G365600' => 'tca', 'Thecc.06G222300' => 'tca', 'Thecc.09G261800' => 'tca', 'Thecc.09G291400' => 'tca', 'Thhalv10003028m.g' => 'esa', 'Thhalv10007886m.g' => 'esa', 'Thhalv10016085m.g' => 'esa', 'Thhalv10016681m.g' => 'esa', 'Thhalv10020951m.g' => 'esa', 'TPR.G15598' => 'tpr', 'TPR.G29305' => 'tpr', 'TPR.G32395' => 'tpr', 'TPR.G36998' => 'tpr', 'TPR.G4227' => 'tpr', 'TWI18G1433' => 'twi', 'TWI31G0755' => 'twi', 'TWI38G0912' => 'twi', 'TWI75G1097' => 'twi', 'TWI75G1619' => 'twi', 'TWI79G1336' => 'twi', 'unitig_0.g943' => 'ugi', 'unitig_0.g944' => 'ugi', 'unitig_22.g6646' => 'ugi', 'unitig_37.g12681' => 'ugi', 'unitig_8.g3290' => 'ugi', 'vmacro03278' => 'vma', 'vmacro12197' => 'vma', 'vmacro14478' => 'vma', 'vmacro15787' => 'vma', 'vmacro15789' => 'vma', 'vmacro15790' => 'vma', 'vmacro15806' => 'vma', 'vmacro22907' => 'vma', 'vmacro22908' => 'vma', 'vmacro22909' => 'vma', 'vmacro23108' => 'vma', 'VMungo0540G0540' => 'vmu', 'VMungo0540G2468' => 'vmu', 'VMungo1080G0390' => 'vmu', 'VMungo1080G1165' => 'vmu', 'VMungo1127G0170' => 'vmu', 'VMungo1127G2099' => 'vmu', 'VMungo1215G3013' => 'vmu', 'Zm00001eb013110' => 'zma', 'Zm00001eb084260' => 'zma', 'Zm00001eb096110' => 'zma', 'Zm00001eb217510' => 'zma', 'Zm00001eb322550' => 'zma', 'Zm00001eb390770' => 'zma', 'Zm00001eb397170' => 'zma', 'Zm00001eb404610' => 'zma', 'Zm00001eb421790' => 'zma' ) $gf_id = 'HOM05D000911' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000911' ) $data_identifier = 'HOM05D000911' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 16, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 5, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 6, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 8, 'nnu' => (int) 16, 'oeu' => (int) 8, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 5, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 16, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421790' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000911', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27780' => 'bna', 'A03p35380' => 'bna', 'A04p21160' => 'bna', 'A05p40570' => 'bna', 'A06p26900' => 'bna', 'A08p33230' => 'bna', 'A09p65960' => 'bna', 'A10p18290' => 'bna', 'Aa31LG1G12990' => 'aar', 'Aa31LG1G2980' => 'aar', 'Aa31LG4G14320' => 'aar', 'Aa31LG7G11800' => 'aar', 'Aa31sc36G50' => 'aar', 'Aa31sc36G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3721' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5459' => 'aag', 'Actinidia03028' => 'ach', 'Actinidia03753' => 'ach', 'Actinidia04187' => 'ach', 'Actinidia05509' => 'ach', 'Actinidia24180' => 'ach', 'Actinidia26906' => 'ach', 'Actinidia37097' => 'ach', 'Actinidia38249' => 'ach', 'Ah.01g003470' => 'amhyb', 'Ah.01g004580' => 'amhyb', 'Ah.01g014850' => 'amhyb', 'Ah.01g016830' => 'amhyb', 'Ah.14g088000' => 'amhyb', 'AL1G22980' => 'aly', 'AL3G18990' => 'aly', 'AL4G22440' => 'aly', 'AL4G33180' => 'aly', 'AL5G22920' => 'aly', 'AL6G33660' => 'aly', 'AL8G20720' => 'aly', 'Aqoxy1G00935' => 'aox', 'Aqoxy1G02094' => 'aox', 'Aqoxy2G01239' => 'aox', 'Aqoxy4G01870' => 'aox', 'Aqoxy7G00450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.36ZVTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71EM27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5D6C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH3WRE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3NCM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RIM768' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YB5YRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z36GDV' => 'arhy', 'AT1G08250' => 'ath', 'AT1G11790' => 'ath', 'AT2G27820' => 'ath', 'AT3G07630' => 'ath', 'AT3G44720' => 'ath', 'AT5G22630' => 'ath', 'ATR0693G304' => 'atr', 'ATR0794G109' => 'atr', 'ATR0820G120' => 'atr', 'ATR1159G064' => 'atr', 'Atru.chr10.2239' => 'acertr', 'Atru.chr3.3371' => 'acertr', 'Atru.chr6.3202' => 'acertr', 'AUR62006499' => 'cqu', 'AUR62012718' => 'cqu', 'AUR62021938' => 'cqu', 'AUR62023932' => 'cqu', 'AUR62025034' => 'cqu', 'AUR62025035' => 'cqu', 'AUR62038307' => 'cqu', 'AUR62043466' => 'cqu', 'BcaB02g10748' => 'bca', 'BcaB03g13231' => 'bca', 'BcaB03g14689' => 'bca', 'BcaB05g22716' => 'bca', 'BcaB06g28172' => 'bca', 'BcaB08g36413' => 'bca', 'BcaC01g02186' => 'bca', 'BcaC01g04272' => 'bca', 'BcaC02g08080' => 'bca', 'BcaC02g08227' => 'bca', 'BcaC03g13901' => 'bca', 'BcaC04g19593' => 'bca', 'BcaC04g20874' => 'bca', 'BcaC05g29557' => 'bca', 'BcaC06g35505' => 'bca', 'BcaC07g41954' => 'bca', 'BcaC07g41955' => 'bca', 'BcaC07g41956' => 'bca', 'BcaC07g42519' => 'bca', 'BcaC07g42520' => 'bca', 'BcaC07g42523' => 'bca', 'BcaC07g42524' => 'bca', 'BcaC07g42525' => 'bca', 'BcaC08g47480' => 'bca', 'BcaC08g47481' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00530' => 'bna', 'BolC2t07178H' => 'bol', 'BolC3t16567H' => 'bol', 'BolC4t27234H' => 'bol', 'BolC5t29728H' => 'bol', 'BolC5t34622H' => 'bol', 'BolC6t40321H' => 'bol', 'BolC7t42028H' => 'bol', 'BolC8t49125H' => 'bol', 'BolC8t52538H' => 'bol', 'BolC8t52539H' => 'bol', 'BolC9t56681H' => 'bol', 'BolC9t58266H' => 'bol', 'BolSC21t60294H' => 'bol', 'BraA02t05670Z' => 'bra', 'BraA03t12716Z' => 'bra', 'BraA04t17685Z' => 'bra', 'BraA05t22788Z' => 'bra', 'BraA06t24032Z' => 'bra', 'BraA06t25625Z' => 'bra', 'BraA07t27930Z' => 'bra', 'BraA08t35242Z' => 'bra', 'BraA09t38609Z' => 'bra', 'BraA10t43905Z' => 'bra', 'C02p11060' => 'bna', 'C03p42990' => 'bna', 'C03p67310' => 'bna', 'C04p56990' => 'bna', 'C04p58660' => 'bna', 'C05p09890' => 'bna', 'C05p59680' => 'bna', 'C06p19830' => 'bna', 'C06p53040' => 'bna', 'C07p15230' => 'bna', 'C08p50070' => 'bna', 'C08p50090' => 'bna', 'C09p38330' => 'bna', 'C09p53940' => 'bna', 'CAN.G1014.1' => 'can', 'CAN.G644.30' => 'can', 'CAN.G84.47' => 'can', 'CAN.G919.8' => 'can', 'CANSAT54G0113' => 'cansat', 'CANSAT54G1286' => 'cansat', 'CANSAT64G1020' => 'cansat', 'CARHR008080' => 'chi', 'CARHR008090' => 'chi', 'CARHR012130' => 'chi', 'CARHR038390' => 'chi', 'CARHR082330' => 'chi', 'CARHR120520' => 'chi', 'CARHR151470' => 'chi', 'CARHR190950' => 'chi', 'Carub.0001s0760' => 'cru', 'Carub.0001s1146' => 'cru', 'Carub.0003s0721' => 'cru', 'Carub.0004s0858' => 'cru', 'Carub.0005s1040' => 'cru', 'Carub.0006s2035' => 'cru', 'Carub.0015s0005' => 'cru', 'Ca_01607_v3' => 'car', 'Ca_01677_v3' => 'car', 'Ca_06087_v3' => 'car', 'Ca_19238_v3' => 'car', 'Ca_19373_v3' => 'car', 'Ca_21079_v3' => 'car', 'CBR_g54016' => 'cbr', 'CBR_g54018' => 'cbr', 'CBR_g54020' => 'cbr', 'Cc01_g09780' => 'ccan', 'Cc01_g11680' => 'ccan', 'Cc02_g15610' => 'ccan', 'Cc05_g04350' => 'ccan', 'Cc09_g01580' => 'ccan', 'CDE01G0795' => 'cde', 'CDE02G2024' => 'cde', 'CDE02G2260' => 'cde', 'CDE02G4561' => 'cde', 'CDE05G2733' => 'cde', 'CDE05G3422' => 'cde', 'CDE06G2003' => 'cde', 'CDE08G0576' => 'cde', 'CDE09G0048' => 'cde', 'CDE11G0805' => 'cde', 'Cfa003644' => 'cfa', 'Cfa006290' => 'cfa', 'Cfa010080' => 'cfa', 'Cfa011376' => 'cfa', 'Cfa011576' => 'cfa', 'Cfa011577' => 'cfa', 'Cfa014389' => 'cfa', 'Ciclev10006044m.g' => 'ccl', 'Ciclev10006954m.g' => 'ccl', 'Ciclev10015131m.g' => 'ccl', 'Ciclev10015580m.g' => 'ccl', 'Ciclev10028359m.g' => 'ccl', 'Ciclev10028573m.g' => 'ccl', 'CiPaw.03G159300' => 'cil', 'CiPaw.04G115100' => 'cil', 'CiPaw.09G092800' => 'cil', 'CiPaw.10G071800' => 'cil', 'CiPaw.13G105800' => 'cil', 'CiPaw.13G141000' => 'cil', 'CiPaw.14G103400' => 'cil', 'ClCG01G012700' => 'cla', 'ClCG01G012720' => 'cla', 'ClCG01G021920' => 'cla', 'ClCG02G008870' => 'cla', 'ClCG02G020840' => 'cla', 'ClCG02G021930' => 'cla', 'COL.COLO4_19302' => 'col', 'COL.COLO4_25262' => 'col', 'COL.COLO4_31788' => 'col', 'Cpa.g.c34684' => 'cpa', 'Cpa.g.c36520.1' => 'cpa', 'Cpa.g.c45626' => 'cpa', 'Cpa.g.sc121.17' => 'cpa', 'Cpa.g.sc13.22' => 'cpa', 'Cpa.g.sc87.88' => 'cpa', 'Cre06.g261800' => 'cre', 'CsaV3_1G014500' => 'csa', 'CsaV3_1G014510' => 'csa', 'CsaV3_2G034880' => 'csa', 'CsaV3_6G014760' => 'csa', 'CsaV3_6G021500' => 'csa', 'CsaV3_6G048980' => 'csa', 'CSS0002511' => 'camsi', 'CSS0007556' => 'camsi', 'CSS0008532' => 'camsi', 'CSS0009709' => 'camsi', 'CSS0010486' => 'camsi', 'CSS0016768' => 'camsi', 'CSS0023512' => 'camsi', 'CSS0025341' => 'camsi', 'CSS0027999' => 'camsi', 'CSS0028944' => 'camsi', 'CSS0032292' => 'camsi', 'CSS0032464' => 'camsi', 'CSS0037153' => 'camsi', 'CSS0039256' => 'camsi', 'CSS0048392' => 'camsi', 'CSS0050458' => 'camsi', 'DCAR_004224' => 'dca', 'DCAR_006147' => 'dca', 'DCAR_006465' => 'dca', 'DCAR_008159' => 'dca', 'DCAR_012164' => 'dca', 'DCAR_019764' => 'dca', 'Dinv05418' => 'din', 'Dinv10839' => 'din', 'Dinv12521' => 'din', 'Dinv13900' => 'din', 'Dinv29426' => 'din', 'Duzib150G0263' => 'dzi', 'Duzib168G1178' => 'dzi', 'Duzib168G1924' => 'dzi', 'Duzib170G0299' => 'dzi', 'Duzib170G0813' => 'dzi', 'Duzib235G1128' => 'dzi', 'Duzib248G1060' => 'dzi', 'ECA232G1910' => 'eca', 'ECA233G4621' => 'eca', 'ECA238G1216' => 'eca', 'ECA238G1784' => 'eca', 'ECA248G1242' => 'eca', 'EL10Ac8g20071' => 'bvu', 'EL10Ac9g21086' => 'bvu', 'EL10Ac9g22407' => 'bvu', 'EL10Ac9g22412' => 'bvu', 'Eucgr.A01119' => 'egr', 'Eucgr.E04043' => 'egr', 'Eucgr.J00428' => 'egr', 'Eucgr.J00958' => 'egr', 'FAN11G3091' => 'fan', 'FAN11G3651' => 'fan', 'FAN16G2566' => 'fan', 'FAN21G3155' => 'fan', 'FAN21G3400' => 'fan', 'FAN21G3543' => 'fan', 'FAN25G0234' => 'fan', 'FAN25G1422' => 'fan', 'FAN25G3392' => 'fan', 'FvH4_3g01940' => 'fve', 'FvH4_3g29870' => 'fve', 'FvH4_3g33680' => 'fve', 'Glyma.09G004200' => 'gma', 'Glyma.11G151288' => 'gma', 'Glyma.11G189100' => 'gma', 'Glyma.12G072500' => 'gma', 'Glyma.12G085500' => 'gma', 'Glyma.12G181800' => 'gma', 'Glyma.12G193000' => 'gma', 'Glyma.13G309300' => 'gma', 'Glyma.13G319000' => 'gma', 'Glyma.17G012600' => 'gma', 'Gohir.A06G148600' => 'ghi', 'Gohir.A07G115800' => 'ghi', 'Gohir.A08G003600' => 'ghi', 'Gohir.A09G093300' => 'ghi', 'Gohir.A09G105400' => 'ghi', 'Gohir.A09G105500' => 'ghi', 'Gohir.D06G154600' => 'ghi', 'Gohir.D07G120200' => 'ghi', 'Gohir.D08G013900' => 'ghi', 'Gohir.D09G093100' => 'ghi', 'Gohir.D09G102200' => 'ghi', 'Gohir.D09G102300' => 'ghi', 'Gorai.001G129400' => 'gra', 'Gorai.004G008200' => 'gra', 'Gorai.006G109800' => 'gra', 'Gorai.006G119500' => 'gra', 'Gorai.006G121300' => 'gra', 'Gorai.010G180700' => 'gra', 'GSVIVG01012716001' => 'vvi', 'GSVIVG01025118001' => 'vvi', 'GSVIVG01030439001' => 'vvi', 'GSVIVG01031397001' => 'vvi', 'HanXRQChr01g0004201' => 'han', 'HanXRQChr02g0054941' => 'han', 'HanXRQChr05g0141811' => 'han', 'HanXRQChr07g0197751' => 'han', 'HanXRQChr11g0346691' => 'han', 'HanXRQChr13g0396971' => 'han', 'HanXRQChr14g0432951' => 'han', 'HanXRQChr14g0452001' => 'han', 'HanXRQChr15g0496681' => 'han', 'HanXRQChr17g0557491' => 'han', 'HanXRQChr17g0557501' => 'han', 'Haze_06809' => 'cav', 'Haze_12852' => 'cav', 'Haze_15850' => 'cav', 'Haze_23446' => 'cav', 'Haze_23942' => 'cav', 'Haze_23943' => 'cav', 'Hma1.2p1_0091F.1_g046450' => 'hma', 'Hma1.2p1_0128F.1_g059910' => 'hma', 'Hma1.2p1_0249F.1_g102260' => 'hma', 'Hma1.2p1_0453F.1_g156190' => 'hma', 'Hma1.2p1_0695F.1_g204380' => 'hma', 'Hma1.2p1_0749F.1_g212650' => 'hma', 'Hma1.2p1_2156F.1_g315420' => 'hma', 'Hma1.2p1_2686F.1_g326940' => 'hma', 'HPP92_006428' => 'vpl', 'HPP92_012069' => 'vpl', 'HPP92_014129' => 'vpl', 'HPP92_014133' => 'vpl', 'HPP92_017315' => 'vpl', 'HPP92_026445' => 'vpl', 'HPP92_026446' => 'vpl', 'Hund00774' => 'sun', 'Hund07682' => 'sun', 'Hund21413' => 'sun', 'Hund23462' => 'sun', 'Hund23463' => 'sun', 'Lalb_Chr03g0027911' => 'lal', 'Lalb_Chr13g0304271' => 'lal', 'Lalb_Chr19g0137471' => 'lal', 'Lalb_Chr22g0350651' => 'lal', 'Lalb_Chr24g0395151' => 'lal', 'Lj1A1231T40' => 'lonja', 'Lj1A221T48' => 'lonja', 'Lj1C924T12' => 'lonja', 'Lj2C993G6' => 'lonja', 'Lj3g0005790' => 'lja', 'Lj3g0015432' => 'lja', 'Lj3g0017722' => 'lja', 'Lj3g0018497' => 'lja', 'Lj4g0025071' => 'lja', 'Lsat_1_v5_gn_1_129680' => 'lsa', 'Lsat_1_v5_gn_2_25321' => 'lsa', 'Lsat_1_v5_gn_2_95461' => 'lsa', 'Lsat_1_v5_gn_4_159620' => 'lsa', 'Lsat_1_v5_gn_6_41301' => 'lsa', 'Lsat_1_v5_gn_6_74660' => 'lsa', 'Lsat_1_v5_gn_7_11520' => 'lsa', 'Lsat_1_v5_gn_9_67680' => 'lsa', 'Manes.04G008300' => 'mes', 'Manes.04G008400' => 'mes', 'Manes.04G026500' => 'mes', 'Manes.10G135300' => 'mes', 'Manes.11G157300' => 'mes', 'Manes.12G074000' => 'mes', 'Manes.16G006200' => 'mes', 'Manes.17G026400' => 'mes', 'Mapoly0024s0086' => 'mpo', 'Mapoly0024s0087' => 'mpo', 'Mapoly0071s0057' => 'mpo', 'Mapoly0204s0012' => 'mpo', 'MBI04_g37681_MAGBIO' => 'mbi', 'MBI05_g17779_MAGBIO' => 'mbi', 'MBI12_g31184_MAGBIO' => 'mbi', 'MBI17_g11083_MAGBIO' => 'mbi', 'MBI18_g03883_MAGBIO' => 'mbi', 'MBI18_g28940_MAGBIO' => 'mbi', 'MCO01G690' => 'mco', 'MD03G1109900' => 'mdo', 'MD03G1134800' => 'mdo', 'MD05G1348000' => 'mdo', 'MD10G1322400' => 'mdo', 'MD11G1123300' => 'mdo', 'MD11G1157600' => 'mdo', 'Medtr2g084875' => 'mtr', 'Medtr2g088130' => 'mtr', 'Medtr4g055310' => 'mtr', 'Medtr4g061070' => 'mtr', 'Medtr4g132250' => 'mtr', 'MELO3C004795.2' => 'cme', 'MELO3C004797.2' => 'cme', 'MELO3C007396.2' => 'cme', 'MELO3C019277.2' => 'cme', 'MELO3C021449.2' => 'cme', 'MELO3C025736.2' => 'cme', 'Migut.D02175' => 'egut', 'Migut.H01573' => 'egut', 'Migut.M01327' => 'egut', 'Migut.N02513' => 'egut', 'MSTRG.14638' => 'ama', 'MSTRG.18632' => 'ama', 'MSTRG.7203' => 'ama', 'Nitab4.5_0000533g0140' => 'nta', 'Nitab4.5_0000888g0150' => 'nta', 'Nitab4.5_0001453g0040' => 'nta', 'Nitab4.5_0002827g0090' => 'nta', 'Nitab4.5_0003082g0040' => 'nta', 'Nitab4.5_0007799g0040' => 'nta', 'Nitab4.5_0008983g0010' => 'nta', 'Nitab4.5_0009017g0020' => 'nta', 'Nn1g02132' => 'nnu', 'Nn1g03492' => 'nnu', 'Nn1g03493' => 'nnu', 'Nn1g03494' => 'nnu', 'Nn1g07164' => 'nnu', 'Nn1g07291' => 'nnu', 'Nn2g10655' => 'nnu', 'Nn2g11652' => 'nnu', 'Nn2g14008' => 'nnu', 'Nn3g17476' => 'nnu', 'Nn3g17477' => 'nnu', 'Nn4g22370' => 'nnu', 'Nn4g25255' => 'nnu', 'Nn5g27755' => 'nnu', 'Nn6g34260' => 'nnu', 'Nn6g35041' => 'nnu', 'Oeu005924.1' => 'oeu', 'Oeu008383.1' => 'oeu', 'Oeu014928.1' => 'oeu', 'Oeu019889.1' => 'oeu', 'Oeu022271.1' => 'oeu', 'Oeu025271.1' => 'oeu', 'Oeu036302.1' => 'oeu', 'Oeu044100.1' => 'oeu', 'Os01g0528300' => 'osa', 'Os03g0286200' => 'osa', 'Os04g0406600' => 'osa', 'Os07g0512000' => 'osa', 'Os07g0694600' => 'osa', 'Os08g0411000' => 'osa', 'Os09g0565700' => 'osa', 'Os09g0566050' => 'osa', 'Os10g0523700' => 'osa', 'Peaxi162Scf00002g00514' => 'pax', 'Peaxi162Scf00047g01817' => 'pax', 'Peaxi162Scf00114g00001' => 'pax', 'Peaxi162Scf00147g00613' => 'pax', 'Peaxi162Scf00389g00425' => 'pax', 'PGR042G1139' => 'pgr', 'PGR042G3273' => 'pgr', 'PGR102G2180' => 'pgr', 'PGR119G0234' => 'pgr', 'PGR119G0668' => 'pgr', 'PGSC0003DMG400007122' => 'stu', 'PGSC0003DMG400016478' => 'stu', 'PGSC0003DMG400025374' => 'stu', 'PGSC0003DMG400026536' => 'stu', 'Phvul.003G079600' => 'pvu', 'Phvul.005G115600' => 'pvu', 'Phvul.005G127100' => 'pvu', 'Phvul.006G149500' => 'pvu', 'Phvul.006G149600' => 'pvu', 'Phvul.011G071800' => 'pvu', 'Phvul.011G090400' => 'pvu', 'Potri.004G013400' => 'ptr', 'Potri.004G188100' => 'ptr', 'Potri.008G195500' => 'ptr', 'Potri.009G148800' => 'ptr', 'Potri.011G004700' => 'ptr', 'Pp3c17_22810' => 'ppa', 'Pp3c18_4480' => 'ppa', 'Pp3c19_13030' => 'ppa', 'Pp3c1_33620' => 'ppa', 'Pp3c2_9380' => 'ppa', 'PRCOL_00001023' => 'pco', 'Prupe.3G216300' => 'ppe', 'Prupe.4G019500' => 'ppe', 'Prupe.6G092500' => 'ppe', 'Prupe.6G119200' => 'ppe', 'Psat0s1945g0080' => 'psa', 'Psat0s4167g0040' => 'psa', 'Psat1g185800' => 'psa', 'Psat4g006440' => 'psa', 'Psat4g006480' => 'psa', 'Psat4g168120' => 'psa', 'Psat5g255680' => 'psa', 'Psat5g261760' => 'psa', 'Psat7g222120' => 'psa', 'PSO063G7252' => 'pso', 'PSO170G4778' => 'pso', 'PSO210G2249' => 'pso', 'PSO339G2411' => 'pso', 'PSO339G2457' => 'pso', 'PSO339G2854' => 'pso', 'PSO339G4288' => 'pso', 'PSO339G4615' => 'pso', 'PSO384G2796' => 'pso', 'PSO384G2940' => 'pso', 'PSO384G4227' => 'pso', 'PSO478G1425' => 'pso', 'PSO541G3863' => 'pso', 'PSO675G0507' => 'pso', 'PSO782G0338' => 'pso', 'PSO832G0644' => 'pso', 'QL01p013664' => 'qlo', 'QL01p036598' => 'qlo', 'QL05p072984' => 'qlo', 'QL08p005768' => 'qlo', 'QL08p032743' => 'qlo', 'QL93p0073_0439' => 'qlo', 'QL93p0073_0444' => 'qlo', 'RcHm_v2.0_Chr5g0002851' => 'rch', 'RcHm_v2.0_Chr5g0055201' => 'rch', 'RcHm_v2.0_Chr5g0061191' => 'rch', 'RcHm_v2.0_Chr7g0203231' => 'rch', 'Rhsim01G0208100' => 'rsi', 'Rhsim01G0208200' => 'rsi', 'Rhsim02G0106500' => 'rsi', 'Rhsim03G0107900' => 'rsi', 'Rhsim06G0163400' => 'rsi', 'Rhsim13G0105200' => 'rsi', 'Sabra04G0006300' => 'sbr', 'Sabra04G0127000' => 'sbr', 'Sabra08G0148700' => 'sbr', 'Sabra09G0117400' => 'sbr', 'SalBow1G3326' => 'sbo', 'SalBow3G3228' => 'sbo', 'SalBow6G1634' => 'sbo', 'SalBow6G3603' => 'sbo', 'SalBow6G5266' => 'sbo', 'SalBow7G2265' => 'sbo', 'SalBow8G0850' => 'sbo', 'SalBow8G2592' => 'sbo', 'Sc05g0009240' => 'sci', 'Sc12g0002300' => 'sci', 'Sc21g0000100' => 'sci', 'Sc21g0004720' => 'sci', 'Sed0002949' => 'sed', 'Sed0004114' => 'sed', 'Sed0004306' => 'sed', 'Sed0006172' => 'sed', 'Sed0008413' => 'sed', 'Sed0013809' => 'sed', 'Sed0019556' => 'sed', 'SEGI_03570' => 'sgi', 'SEGI_07859' => 'sgi', 'SEGI_15042' => 'sgi', 'SEGI_16263' => 'sgi', 'SEGI_16552' => 'sgi', 'SEGI_24331' => 'sgi', 'SEGI_27316' => 'sgi', 'SEGI_29521' => 'sgi', 'SEGI_41342' => 'sgi', 'SGA_v2.0_scaffold27G11617' => 'sas', 'SGA_v2.0_scaffold316G48428' => 'sas', 'SGA_v2.0_scaffold49G18261' => 'sas', 'SGA_v2.0_scaffold7G03831' => 'sas', 'SGA_v2.0_scaffold93G28359' => 'sas', 'SHI02210' => 'shi', 'SHI06028' => 'shi', 'SHI06321' => 'shi', 'SMO111G0012' => 'smo', 'SMO228G0080' => 'smo', 'SMO356G0756' => 'smo', 'Solyc02g080620.3' => 'sly', 'Solyc06g074530.1' => 'sly', 'Solyc11g066890.1' => 'sly', 'Solyc11g072520.3' => 'sly', 'Sopen02g025330' => 'spe', 'Sopen06g031000' => 'spe', 'Sopen09g008240' => 'spe', 'Sopen09g025210' => 'spe', 'Sopen11g026600' => 'spe', 'Sopen11g030170' => 'spe', 'Sp1g10420' => 'spa', 'Sp3g06570' => 'spa', 'Sp4g10660' => 'spa', 'Sp5g16460' => 'spa', 'Sp6g22710' => 'spa', 'TAR365G0112' => 'tar', 'TAR369G0717' => 'tar', 'TAR374G0976' => 'tar', 'TAR623G1128' => 'tar', 'TAR626G1937' => 'tar', 'TAR627G0123' => 'tar', 'TAR628G0305' => 'tar', 'TAR636G1176' => 'tar', 'TAR636G2442' => 'tar', 'THA.LOC104800556' => 'tha', 'THA.LOC104809501' => 'tha', 'THA.LOC104815126' => 'tha', 'THA.LOC104815732' => 'tha', 'THA.LOC104823528' => 'tha', 'Thecc.02G365600' => 'tca', 'Thecc.06G222300' => 'tca', 'Thecc.09G261800' => 'tca', 'Thecc.09G291400' => 'tca', 'Thhalv10003028m.g' => 'esa', 'Thhalv10007886m.g' => 'esa', 'Thhalv10016085m.g' => 'esa', 'Thhalv10016681m.g' => 'esa', 'Thhalv10020951m.g' => 'esa', 'TPR.G15598' => 'tpr', 'TPR.G29305' => 'tpr', 'TPR.G32395' => 'tpr', 'TPR.G36998' => 'tpr', 'TPR.G4227' => 'tpr', 'TWI18G1433' => 'twi', 'TWI31G0755' => 'twi', 'TWI38G0912' => 'twi', 'TWI75G1097' => 'twi', 'TWI75G1619' => 'twi', 'TWI79G1336' => 'twi', 'unitig_0.g943' => 'ugi', 'unitig_0.g944' => 'ugi', 'unitig_22.g6646' => 'ugi', 'unitig_37.g12681' => 'ugi', 'unitig_8.g3290' => 'ugi', 'vmacro03278' => 'vma', 'vmacro12197' => 'vma', 'vmacro14478' => 'vma', 'vmacro15787' => 'vma', 'vmacro15789' => 'vma', 'vmacro15790' => 'vma', 'vmacro15806' => 'vma', 'vmacro22907' => 'vma', 'vmacro22908' => 'vma', 'vmacro22909' => 'vma', 'vmacro23108' => 'vma', 'VMungo0540G0540' => 'vmu', 'VMungo0540G2468' => 'vmu', 'VMungo1080G0390' => 'vmu', 'VMungo1080G1165' => 'vmu', 'VMungo1127G0170' => 'vmu', 'VMungo1127G2099' => 'vmu', 'VMungo1215G3013' => 'vmu', 'Zm00001eb013110' => 'zma', 'Zm00001eb084260' => 'zma', 'Zm00001eb096110' => 'zma', 'Zm00001eb217510' => 'zma', 'Zm00001eb322550' => 'zma', 'Zm00001eb390770' => 'zma', 'Zm00001eb397170' => 'zma', 'Zm00001eb404610' => 'zma', 'Zm00001eb421790' => 'zma' ), 'gf_id' => 'HOM05D000911', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000911' ), 'data_identifier' => 'HOM05D000911', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000911', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27780' => 'bna', 'A03p35380' => 'bna', 'A04p21160' => 'bna', 'A05p40570' => 'bna', 'A06p26900' => 'bna', 'A08p33230' => 'bna', 'A09p65960' => 'bna', 'A10p18290' => 'bna', 'Aa31LG1G12990' => 'aar', 'Aa31LG1G2980' => 'aar', 'Aa31LG4G14320' => 'aar', 'Aa31LG7G11800' => 'aar', 'Aa31sc36G50' => 'aar', 'Aa31sc36G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3721' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5459' => 'aag', 'Actinidia03028' => 'ach', 'Actinidia03753' => 'ach', 'Actinidia04187' => 'ach', 'Actinidia05509' => 'ach', 'Actinidia24180' => 'ach', 'Actinidia26906' => 'ach', 'Actinidia37097' => 'ach', 'Actinidia38249' => 'ach', 'Ah.01g003470' => 'amhyb', 'Ah.01g004580' => 'amhyb', 'Ah.01g014850' => 'amhyb', 'Ah.01g016830' => 'amhyb', 'Ah.14g088000' => 'amhyb', 'AL1G22980' => 'aly', 'AL3G18990' => 'aly', 'AL4G22440' => 'aly', 'AL4G33180' => 'aly', 'AL5G22920' => 'aly', 'AL6G33660' => 'aly', 'AL8G20720' => 'aly', 'Aqoxy1G00935' => 'aox', 'Aqoxy1G02094' => 'aox', 'Aqoxy2G01239' => 'aox', 'Aqoxy4G01870' => 'aox', 'Aqoxy7G00450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.36ZVTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71EM27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5D6C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH3WRE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3NCM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RIM768' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YB5YRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z36GDV' => 'arhy', 'AT1G08250' => 'ath', 'AT1G11790' => 'ath', 'AT2G27820' => 'ath', 'AT3G07630' => 'ath', 'AT3G44720' => 'ath', 'AT5G22630' => 'ath', 'ATR0693G304' => 'atr', 'ATR0794G109' => 'atr', 'ATR0820G120' => 'atr', 'ATR1159G064' => 'atr', 'Atru.chr10.2239' => 'acertr', 'Atru.chr3.3371' => 'acertr', 'Atru.chr6.3202' => 'acertr', 'AUR62006499' => 'cqu', 'AUR62012718' => 'cqu', 'AUR62021938' => 'cqu', 'AUR62023932' => 'cqu', 'AUR62025034' => 'cqu', 'AUR62025035' => 'cqu', 'AUR62038307' => 'cqu', 'AUR62043466' => 'cqu', 'BcaB02g10748' => 'bca', 'BcaB03g13231' => 'bca', 'BcaB03g14689' => 'bca', 'BcaB05g22716' => 'bca', 'BcaB06g28172' => 'bca', 'BcaB08g36413' => 'bca', 'BcaC01g02186' => 'bca', 'BcaC01g04272' => 'bca', 'BcaC02g08080' => 'bca', 'BcaC02g08227' => 'bca', 'BcaC03g13901' => 'bca', 'BcaC04g19593' => 'bca', 'BcaC04g20874' => 'bca', 'BcaC05g29557' => 'bca', 'BcaC06g35505' => 'bca', 'BcaC07g41954' => 'bca', 'BcaC07g41955' => 'bca', 'BcaC07g41956' => 'bca', 'BcaC07g42519' => 'bca', 'BcaC07g42520' => 'bca', 'BcaC07g42523' => 'bca', 'BcaC07g42524' => 'bca', 'BcaC07g42525' => 'bca', 'BcaC08g47480' => 'bca', 'BcaC08g47481' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00530' => 'bna', 'BolC2t07178H' => 'bol', 'BolC3t16567H' => 'bol', 'BolC4t27234H' => 'bol', 'BolC5t29728H' => 'bol', 'BolC5t34622H' => 'bol', 'BolC6t40321H' => 'bol', 'BolC7t42028H' => 'bol', 'BolC8t49125H' => 'bol', 'BolC8t52538H' => 'bol', 'BolC8t52539H' => 'bol', 'BolC9t56681H' => 'bol', 'BolC9t58266H' => 'bol', 'BolSC21t60294H' => 'bol', 'BraA02t05670Z' => 'bra', 'BraA03t12716Z' => 'bra', 'BraA04t17685Z' => 'bra', 'BraA05t22788Z' => 'bra', 'BraA06t24032Z' => 'bra', 'BraA06t25625Z' => 'bra', 'BraA07t27930Z' => 'bra', 'BraA08t35242Z' => 'bra', 'BraA09t38609Z' => 'bra', 'BraA10t43905Z' => 'bra', 'C02p11060' => 'bna', 'C03p42990' => 'bna', 'C03p67310' => 'bna', 'C04p56990' => 'bna', 'C04p58660' => 'bna', 'C05p09890' => 'bna', 'C05p59680' => 'bna', 'C06p19830' => 'bna', 'C06p53040' => 'bna', 'C07p15230' => 'bna', 'C08p50070' => 'bna', 'C08p50090' => 'bna', 'C09p38330' => 'bna', 'C09p53940' => 'bna', 'CAN.G1014.1' => 'can', 'CAN.G644.30' => 'can', 'CAN.G84.47' => 'can', 'CAN.G919.8' => 'can', 'CANSAT54G0113' => 'cansat', 'CANSAT54G1286' => 'cansat', 'CANSAT64G1020' => 'cansat', 'CARHR008080' => 'chi', 'CARHR008090' => 'chi', 'CARHR012130' => 'chi', 'CARHR038390' => 'chi', 'CARHR082330' => 'chi', 'CARHR120520' => 'chi', 'CARHR151470' => 'chi', 'CARHR190950' => 'chi', 'Carub.0001s0760' => 'cru', 'Carub.0001s1146' => 'cru', 'Carub.0003s0721' => 'cru', 'Carub.0004s0858' => 'cru', 'Carub.0005s1040' => 'cru', 'Carub.0006s2035' => 'cru', 'Carub.0015s0005' => 'cru', 'Ca_01607_v3' => 'car', 'Ca_01677_v3' => 'car', 'Ca_06087_v3' => 'car', 'Ca_19238_v3' => 'car', 'Ca_19373_v3' => 'car', 'Ca_21079_v3' => 'car', 'CBR_g54016' => 'cbr', 'CBR_g54018' => 'cbr', 'CBR_g54020' => 'cbr', 'Cc01_g09780' => 'ccan', 'Cc01_g11680' => 'ccan', 'Cc02_g15610' => 'ccan', 'Cc05_g04350' => 'ccan', 'Cc09_g01580' => 'ccan', 'CDE01G0795' => 'cde', 'CDE02G2024' => 'cde', 'CDE02G2260' => 'cde', 'CDE02G4561' => 'cde', 'CDE05G2733' => 'cde', 'CDE05G3422' => 'cde', 'CDE06G2003' => 'cde', 'CDE08G0576' => 'cde', 'CDE09G0048' => 'cde', 'CDE11G0805' => 'cde', 'Cfa003644' => 'cfa', 'Cfa006290' => 'cfa', 'Cfa010080' => 'cfa', 'Cfa011376' => 'cfa', 'Cfa011576' => 'cfa', 'Cfa011577' => 'cfa', 'Cfa014389' => 'cfa', 'Ciclev10006044m.g' => 'ccl', 'Ciclev10006954m.g' => 'ccl', 'Ciclev10015131m.g' => 'ccl', 'Ciclev10015580m.g' => 'ccl', 'Ciclev10028359m.g' => 'ccl', 'Ciclev10028573m.g' => 'ccl', 'CiPaw.03G159300' => 'cil', 'CiPaw.04G115100' => 'cil', 'CiPaw.09G092800' => 'cil', 'CiPaw.10G071800' => 'cil', 'CiPaw.13G105800' => 'cil', 'CiPaw.13G141000' => 'cil', 'CiPaw.14G103400' => 'cil', 'ClCG01G012700' => 'cla', 'ClCG01G012720' => 'cla', 'ClCG01G021920' => 'cla', 'ClCG02G008870' => 'cla', 'ClCG02G020840' => 'cla', 'ClCG02G021930' => 'cla', 'COL.COLO4_19302' => 'col', 'COL.COLO4_25262' => 'col', 'COL.COLO4_31788' => 'col', 'Cpa.g.c34684' => 'cpa', 'Cpa.g.c36520.1' => 'cpa', 'Cpa.g.c45626' => 'cpa', 'Cpa.g.sc121.17' => 'cpa', 'Cpa.g.sc13.22' => 'cpa', 'Cpa.g.sc87.88' => 'cpa', 'Cre06.g261800' => 'cre', 'CsaV3_1G014500' => 'csa', 'CsaV3_1G014510' => 'csa', 'CsaV3_2G034880' => 'csa', 'CsaV3_6G014760' => 'csa', 'CsaV3_6G021500' => 'csa', 'CsaV3_6G048980' => 'csa', 'CSS0002511' => 'camsi', 'CSS0007556' => 'camsi', 'CSS0008532' => 'camsi', 'CSS0009709' => 'camsi', 'CSS0010486' => 'camsi', 'CSS0016768' => 'camsi', 'CSS0023512' => 'camsi', 'CSS0025341' => 'camsi', 'CSS0027999' => 'camsi', 'CSS0028944' => 'camsi', 'CSS0032292' => 'camsi', 'CSS0032464' => 'camsi', 'CSS0037153' => 'camsi', 'CSS0039256' => 'camsi', 'CSS0048392' => 'camsi', 'CSS0050458' => 'camsi', 'DCAR_004224' => 'dca', 'DCAR_006147' => 'dca', 'DCAR_006465' => 'dca', 'DCAR_008159' => 'dca', 'DCAR_012164' => 'dca', 'DCAR_019764' => 'dca', 'Dinv05418' => 'din', 'Dinv10839' => 'din', 'Dinv12521' => 'din', 'Dinv13900' => 'din', 'Dinv29426' => 'din', 'Duzib150G0263' => 'dzi', 'Duzib168G1178' => 'dzi', 'Duzib168G1924' => 'dzi', 'Duzib170G0299' => 'dzi', 'Duzib170G0813' => 'dzi', 'Duzib235G1128' => 'dzi', 'Duzib248G1060' => 'dzi', 'ECA232G1910' => 'eca', 'ECA233G4621' => 'eca', 'ECA238G1216' => 'eca', 'ECA238G1784' => 'eca', 'ECA248G1242' => 'eca', 'EL10Ac8g20071' => 'bvu', 'EL10Ac9g21086' => 'bvu', 'EL10Ac9g22407' => 'bvu', 'EL10Ac9g22412' => 'bvu', 'Eucgr.A01119' => 'egr', 'Eucgr.E04043' => 'egr', 'Eucgr.J00428' => 'egr', 'Eucgr.J00958' => 'egr', 'FAN11G3091' => 'fan', 'FAN11G3651' => 'fan', 'FAN16G2566' => 'fan', 'FAN21G3155' => 'fan', 'FAN21G3400' => 'fan', 'FAN21G3543' => 'fan', 'FAN25G0234' => 'fan', 'FAN25G1422' => 'fan', 'FAN25G3392' => 'fan', 'FvH4_3g01940' => 'fve', 'FvH4_3g29870' => 'fve', 'FvH4_3g33680' => 'fve', 'Glyma.09G004200' => 'gma', 'Glyma.11G151288' => 'gma', 'Glyma.11G189100' => 'gma', 'Glyma.12G072500' => 'gma', 'Glyma.12G085500' => 'gma', 'Glyma.12G181800' => 'gma', 'Glyma.12G193000' => 'gma', 'Glyma.13G309300' => 'gma', 'Glyma.13G319000' => 'gma', 'Glyma.17G012600' => 'gma', 'Gohir.A06G148600' => 'ghi', 'Gohir.A07G115800' => 'ghi', 'Gohir.A08G003600' => 'ghi', 'Gohir.A09G093300' => 'ghi', 'Gohir.A09G105400' => 'ghi', 'Gohir.A09G105500' => 'ghi', 'Gohir.D06G154600' => 'ghi', 'Gohir.D07G120200' => 'ghi', 'Gohir.D08G013900' => 'ghi', 'Gohir.D09G093100' => 'ghi', 'Gohir.D09G102200' => 'ghi', 'Gohir.D09G102300' => 'ghi', 'Gorai.001G129400' => 'gra', 'Gorai.004G008200' => 'gra', 'Gorai.006G109800' => 'gra', 'Gorai.006G119500' => 'gra', 'Gorai.006G121300' => 'gra', 'Gorai.010G180700' => 'gra', 'GSVIVG01012716001' => 'vvi', 'GSVIVG01025118001' => 'vvi', 'GSVIVG01030439001' => 'vvi', 'GSVIVG01031397001' => 'vvi', 'HanXRQChr01g0004201' => 'han', 'HanXRQChr02g0054941' => 'han', 'HanXRQChr05g0141811' => 'han', 'HanXRQChr07g0197751' => 'han', 'HanXRQChr11g0346691' => 'han', 'HanXRQChr13g0396971' => 'han', 'HanXRQChr14g0432951' => 'han', 'HanXRQChr14g0452001' => 'han', 'HanXRQChr15g0496681' => 'han', 'HanXRQChr17g0557491' => 'han', 'HanXRQChr17g0557501' => 'han', 'Haze_06809' => 'cav', 'Haze_12852' => 'cav', 'Haze_15850' => 'cav', 'Haze_23446' => 'cav', 'Haze_23942' => 'cav', 'Haze_23943' => 'cav', 'Hma1.2p1_0091F.1_g046450' => 'hma', 'Hma1.2p1_0128F.1_g059910' => 'hma', 'Hma1.2p1_0249F.1_g102260' => 'hma', 'Hma1.2p1_0453F.1_g156190' => 'hma', 'Hma1.2p1_0695F.1_g204380' => 'hma', 'Hma1.2p1_0749F.1_g212650' => 'hma', 'Hma1.2p1_2156F.1_g315420' => 'hma', 'Hma1.2p1_2686F.1_g326940' => 'hma', 'HPP92_006428' => 'vpl', 'HPP92_012069' => 'vpl', 'HPP92_014129' => 'vpl', 'HPP92_014133' => 'vpl', 'HPP92_017315' => 'vpl', 'HPP92_026445' => 'vpl', 'HPP92_026446' => 'vpl', 'Hund00774' => 'sun', 'Hund07682' => 'sun', 'Hund21413' => 'sun', 'Hund23462' => 'sun', 'Hund23463' => 'sun', 'Lalb_Chr03g0027911' => 'lal', 'Lalb_Chr13g0304271' => 'lal', 'Lalb_Chr19g0137471' => 'lal', 'Lalb_Chr22g0350651' => 'lal', 'Lalb_Chr24g0395151' => 'lal', 'Lj1A1231T40' => 'lonja', 'Lj1A221T48' => 'lonja', 'Lj1C924T12' => 'lonja', 'Lj2C993G6' => 'lonja', 'Lj3g0005790' => 'lja', 'Lj3g0015432' => 'lja', 'Lj3g0017722' => 'lja', 'Lj3g0018497' => 'lja', 'Lj4g0025071' => 'lja', 'Lsat_1_v5_gn_1_129680' => 'lsa', 'Lsat_1_v5_gn_2_25321' => 'lsa', 'Lsat_1_v5_gn_2_95461' => 'lsa', 'Lsat_1_v5_gn_4_159620' => 'lsa', 'Lsat_1_v5_gn_6_41301' => 'lsa', 'Lsat_1_v5_gn_6_74660' => 'lsa', 'Lsat_1_v5_gn_7_11520' => 'lsa', 'Lsat_1_v5_gn_9_67680' => 'lsa', 'Manes.04G008300' => 'mes', 'Manes.04G008400' => 'mes', 'Manes.04G026500' => 'mes', 'Manes.10G135300' => 'mes', 'Manes.11G157300' => 'mes', 'Manes.12G074000' => 'mes', 'Manes.16G006200' => 'mes', 'Manes.17G026400' => 'mes', 'Mapoly0024s0086' => 'mpo', 'Mapoly0024s0087' => 'mpo', 'Mapoly0071s0057' => 'mpo', 'Mapoly0204s0012' => 'mpo', 'MBI04_g37681_MAGBIO' => 'mbi', 'MBI05_g17779_MAGBIO' => 'mbi', 'MBI12_g31184_MAGBIO' => 'mbi', 'MBI17_g11083_MAGBIO' => 'mbi', 'MBI18_g03883_MAGBIO' => 'mbi', 'MBI18_g28940_MAGBIO' => 'mbi', 'MCO01G690' => 'mco', 'MD03G1109900' => 'mdo', 'MD03G1134800' => 'mdo', 'MD05G1348000' => 'mdo', 'MD10G1322400' => 'mdo', 'MD11G1123300' => 'mdo', 'MD11G1157600' => 'mdo', 'Medtr2g084875' => 'mtr', 'Medtr2g088130' => 'mtr', 'Medtr4g055310' => 'mtr', 'Medtr4g061070' => 'mtr', 'Medtr4g132250' => 'mtr', 'MELO3C004795.2' => 'cme', 'MELO3C004797.2' => 'cme', 'MELO3C007396.2' => 'cme', 'MELO3C019277.2' => 'cme', 'MELO3C021449.2' => 'cme', 'MELO3C025736.2' => 'cme', 'Migut.D02175' => 'egut', 'Migut.H01573' => 'egut', 'Migut.M01327' => 'egut', 'Migut.N02513' => 'egut', 'MSTRG.14638' => 'ama', 'MSTRG.18632' => 'ama', 'MSTRG.7203' => 'ama', 'Nitab4.5_0000533g0140' => 'nta', 'Nitab4.5_0000888g0150' => 'nta', 'Nitab4.5_0001453g0040' => 'nta', 'Nitab4.5_0002827g0090' => 'nta', 'Nitab4.5_0003082g0040' => 'nta', 'Nitab4.5_0007799g0040' => 'nta', 'Nitab4.5_0008983g0010' => 'nta', 'Nitab4.5_0009017g0020' => 'nta', 'Nn1g02132' => 'nnu', 'Nn1g03492' => 'nnu', 'Nn1g03493' => 'nnu', 'Nn1g03494' => 'nnu', 'Nn1g07164' => 'nnu', 'Nn1g07291' => 'nnu', 'Nn2g10655' => 'nnu', 'Nn2g11652' => 'nnu', 'Nn2g14008' => 'nnu', 'Nn3g17476' => 'nnu', 'Nn3g17477' => 'nnu', 'Nn4g22370' => 'nnu', 'Nn4g25255' => 'nnu', 'Nn5g27755' => 'nnu', 'Nn6g34260' => 'nnu', 'Nn6g35041' => 'nnu', 'Oeu005924.1' => 'oeu', 'Oeu008383.1' => 'oeu', 'Oeu014928.1' => 'oeu', 'Oeu019889.1' => 'oeu', 'Oeu022271.1' => 'oeu', 'Oeu025271.1' => 'oeu', 'Oeu036302.1' => 'oeu', 'Oeu044100.1' => 'oeu', 'Os01g0528300' => 'osa', 'Os03g0286200' => 'osa', 'Os04g0406600' => 'osa', 'Os07g0512000' => 'osa', 'Os07g0694600' => 'osa', 'Os08g0411000' => 'osa', 'Os09g0565700' => 'osa', 'Os09g0566050' => 'osa', 'Os10g0523700' => 'osa', 'Peaxi162Scf00002g00514' => 'pax', 'Peaxi162Scf00047g01817' => 'pax', 'Peaxi162Scf00114g00001' => 'pax', 'Peaxi162Scf00147g00613' => 'pax', 'Peaxi162Scf00389g00425' => 'pax', 'PGR042G1139' => 'pgr', 'PGR042G3273' => 'pgr', 'PGR102G2180' => 'pgr', 'PGR119G0234' => 'pgr', 'PGR119G0668' => 'pgr', 'PGSC0003DMG400007122' => 'stu', 'PGSC0003DMG400016478' => 'stu', 'PGSC0003DMG400025374' => 'stu', 'PGSC0003DMG400026536' => 'stu', 'Phvul.003G079600' => 'pvu', 'Phvul.005G115600' => 'pvu', 'Phvul.005G127100' => 'pvu', 'Phvul.006G149500' => 'pvu', 'Phvul.006G149600' => 'pvu', 'Phvul.011G071800' => 'pvu', 'Phvul.011G090400' => 'pvu', 'Potri.004G013400' => 'ptr', 'Potri.004G188100' => 'ptr', 'Potri.008G195500' => 'ptr', 'Potri.009G148800' => 'ptr', 'Potri.011G004700' => 'ptr', 'Pp3c17_22810' => 'ppa', 'Pp3c18_4480' => 'ppa', 'Pp3c19_13030' => 'ppa', 'Pp3c1_33620' => 'ppa', 'Pp3c2_9380' => 'ppa', 'PRCOL_00001023' => 'pco', 'Prupe.3G216300' => 'ppe', 'Prupe.4G019500' => 'ppe', 'Prupe.6G092500' => 'ppe', 'Prupe.6G119200' => 'ppe', 'Psat0s1945g0080' => 'psa', 'Psat0s4167g0040' => 'psa', 'Psat1g185800' => 'psa', 'Psat4g006440' => 'psa', 'Psat4g006480' => 'psa', 'Psat4g168120' => 'psa', 'Psat5g255680' => 'psa', 'Psat5g261760' => 'psa', 'Psat7g222120' => 'psa', 'PSO063G7252' => 'pso', 'PSO170G4778' => 'pso', 'PSO210G2249' => 'pso', 'PSO339G2411' => 'pso', 'PSO339G2457' => 'pso', 'PSO339G2854' => 'pso', 'PSO339G4288' => 'pso', 'PSO339G4615' => 'pso', 'PSO384G2796' => 'pso', 'PSO384G2940' => 'pso', 'PSO384G4227' => 'pso', 'PSO478G1425' => 'pso', 'PSO541G3863' => 'pso', 'PSO675G0507' => 'pso', 'PSO782G0338' => 'pso', 'PSO832G0644' => 'pso', 'QL01p013664' => 'qlo', 'QL01p036598' => 'qlo', 'QL05p072984' => 'qlo', 'QL08p005768' => 'qlo', 'QL08p032743' => 'qlo', 'QL93p0073_0439' => 'qlo', 'QL93p0073_0444' => 'qlo', 'RcHm_v2.0_Chr5g0002851' => 'rch', 'RcHm_v2.0_Chr5g0055201' => 'rch', 'RcHm_v2.0_Chr5g0061191' => 'rch', 'RcHm_v2.0_Chr7g0203231' => 'rch', 'Rhsim01G0208100' => 'rsi', 'Rhsim01G0208200' => 'rsi', 'Rhsim02G0106500' => 'rsi', 'Rhsim03G0107900' => 'rsi', 'Rhsim06G0163400' => 'rsi', 'Rhsim13G0105200' => 'rsi', 'Sabra04G0006300' => 'sbr', 'Sabra04G0127000' => 'sbr', 'Sabra08G0148700' => 'sbr', 'Sabra09G0117400' => 'sbr', 'SalBow1G3326' => 'sbo', 'SalBow3G3228' => 'sbo', 'SalBow6G1634' => 'sbo', 'SalBow6G3603' => 'sbo', 'SalBow6G5266' => 'sbo', 'SalBow7G2265' => 'sbo', 'SalBow8G0850' => 'sbo', 'SalBow8G2592' => 'sbo', 'Sc05g0009240' => 'sci', 'Sc12g0002300' => 'sci', 'Sc21g0000100' => 'sci', 'Sc21g0004720' => 'sci', 'Sed0002949' => 'sed', 'Sed0004114' => 'sed', 'Sed0004306' => 'sed', 'Sed0006172' => 'sed', 'Sed0008413' => 'sed', 'Sed0013809' => 'sed', 'Sed0019556' => 'sed', 'SEGI_03570' => 'sgi', 'SEGI_07859' => 'sgi', 'SEGI_15042' => 'sgi', 'SEGI_16263' => 'sgi', 'SEGI_16552' => 'sgi', 'SEGI_24331' => 'sgi', 'SEGI_27316' => 'sgi', 'SEGI_29521' => 'sgi', 'SEGI_41342' => 'sgi', 'SGA_v2.0_scaffold27G11617' => 'sas', 'SGA_v2.0_scaffold316G48428' => 'sas', 'SGA_v2.0_scaffold49G18261' => 'sas', 'SGA_v2.0_scaffold7G03831' => 'sas', 'SGA_v2.0_scaffold93G28359' => 'sas', 'SHI02210' => 'shi', 'SHI06028' => 'shi', 'SHI06321' => 'shi', 'SMO111G0012' => 'smo', 'SMO228G0080' => 'smo', 'SMO356G0756' => 'smo', 'Solyc02g080620.3' => 'sly', 'Solyc06g074530.1' => 'sly', 'Solyc11g066890.1' => 'sly', 'Solyc11g072520.3' => 'sly', 'Sopen02g025330' => 'spe', 'Sopen06g031000' => 'spe', 'Sopen09g008240' => 'spe', 'Sopen09g025210' => 'spe', 'Sopen11g026600' => 'spe', 'Sopen11g030170' => 'spe', 'Sp1g10420' => 'spa', 'Sp3g06570' => 'spa', 'Sp4g10660' => 'spa', 'Sp5g16460' => 'spa', 'Sp6g22710' => 'spa', 'TAR365G0112' => 'tar', 'TAR369G0717' => 'tar', 'TAR374G0976' => 'tar', 'TAR623G1128' => 'tar', 'TAR626G1937' => 'tar', 'TAR627G0123' => 'tar', 'TAR628G0305' => 'tar', 'TAR636G1176' => 'tar', 'TAR636G2442' => 'tar', 'THA.LOC104800556' => 'tha', 'THA.LOC104809501' => 'tha', 'THA.LOC104815126' => 'tha', 'THA.LOC104815732' => 'tha', 'THA.LOC104823528' => 'tha', 'Thecc.02G365600' => 'tca', 'Thecc.06G222300' => 'tca', 'Thecc.09G261800' => 'tca', 'Thecc.09G291400' => 'tca', 'Thhalv10003028m.g' => 'esa', 'Thhalv10007886m.g' => 'esa', 'Thhalv10016085m.g' => 'esa', 'Thhalv10016681m.g' => 'esa', 'Thhalv10020951m.g' => 'esa', 'TPR.G15598' => 'tpr', 'TPR.G29305' => 'tpr', 'TPR.G32395' => 'tpr', 'TPR.G36998' => 'tpr', 'TPR.G4227' => 'tpr', 'TWI18G1433' => 'twi', 'TWI31G0755' => 'twi', 'TWI38G0912' => 'twi', 'TWI75G1097' => 'twi', 'TWI75G1619' => 'twi', 'TWI79G1336' => 'twi', 'unitig_0.g943' => 'ugi', 'unitig_0.g944' => 'ugi', 'unitig_22.g6646' => 'ugi', 'unitig_37.g12681' => 'ugi', 'unitig_8.g3290' => 'ugi', 'vmacro03278' => 'vma', 'vmacro12197' => 'vma', 'vmacro14478' => 'vma', 'vmacro15787' => 'vma', 'vmacro15789' => 'vma', 'vmacro15790' => 'vma', 'vmacro15806' => 'vma', 'vmacro22907' => 'vma', 'vmacro22908' => 'vma', 'vmacro22909' => 'vma', 'vmacro23108' => 'vma', 'VMungo0540G0540' => 'vmu', 'VMungo0540G2468' => 'vmu', 'VMungo1080G0390' => 'vmu', 'VMungo1080G1165' => 'vmu', 'VMungo1127G0170' => 'vmu', 'VMungo1127G2099' => 'vmu', 'VMungo1215G3013' => 'vmu', 'Zm00001eb013110' => 'zma', 'Zm00001eb084260' => 'zma', 'Zm00001eb096110' => 'zma', 'Zm00001eb217510' => 'zma', 'Zm00001eb322550' => 'zma', 'Zm00001eb390770' => 'zma', 'Zm00001eb397170' => 'zma', 'Zm00001eb404610' => 'zma', 'Zm00001eb421790' => 'zma' ) $gf_id = 'HOM05D000911' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000911' ) $data_identifier = 'HOM05D000911' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 16, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 5, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 6, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 8, 'nnu' => (int) 16, 'oeu' => (int) 8, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 5, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 16, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421790' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000911', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27780' => 'bna', 'A03p35380' => 'bna', 'A04p21160' => 'bna', 'A05p40570' => 'bna', 'A06p26900' => 'bna', 'A08p33230' => 'bna', 'A09p65960' => 'bna', 'A10p18290' => 'bna', 'Aa31LG1G12990' => 'aar', 'Aa31LG1G2980' => 'aar', 'Aa31LG4G14320' => 'aar', 'Aa31LG7G11800' => 'aar', 'Aa31sc36G50' => 'aar', 'Aa31sc36G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3721' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5459' => 'aag', 'Actinidia03028' => 'ach', 'Actinidia03753' => 'ach', 'Actinidia04187' => 'ach', 'Actinidia05509' => 'ach', 'Actinidia24180' => 'ach', 'Actinidia26906' => 'ach', 'Actinidia37097' => 'ach', 'Actinidia38249' => 'ach', 'Ah.01g003470' => 'amhyb', 'Ah.01g004580' => 'amhyb', 'Ah.01g014850' => 'amhyb', 'Ah.01g016830' => 'amhyb', 'Ah.14g088000' => 'amhyb', 'AL1G22980' => 'aly', 'AL3G18990' => 'aly', 'AL4G22440' => 'aly', 'AL4G33180' => 'aly', 'AL5G22920' => 'aly', 'AL6G33660' => 'aly', 'AL8G20720' => 'aly', 'Aqoxy1G00935' => 'aox', 'Aqoxy1G02094' => 'aox', 'Aqoxy2G01239' => 'aox', 'Aqoxy4G01870' => 'aox', 'Aqoxy7G00450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.36ZVTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71EM27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5D6C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH3WRE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3NCM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RIM768' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YB5YRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z36GDV' => 'arhy', 'AT1G08250' => 'ath', 'AT1G11790' => 'ath', 'AT2G27820' => 'ath', 'AT3G07630' => 'ath', 'AT3G44720' => 'ath', 'AT5G22630' => 'ath', 'ATR0693G304' => 'atr', 'ATR0794G109' => 'atr', 'ATR0820G120' => 'atr', 'ATR1159G064' => 'atr', 'Atru.chr10.2239' => 'acertr', 'Atru.chr3.3371' => 'acertr', 'Atru.chr6.3202' => 'acertr', 'AUR62006499' => 'cqu', 'AUR62012718' => 'cqu', 'AUR62021938' => 'cqu', 'AUR62023932' => 'cqu', 'AUR62025034' => 'cqu', 'AUR62025035' => 'cqu', 'AUR62038307' => 'cqu', 'AUR62043466' => 'cqu', 'BcaB02g10748' => 'bca', 'BcaB03g13231' => 'bca', 'BcaB03g14689' => 'bca', 'BcaB05g22716' => 'bca', 'BcaB06g28172' => 'bca', 'BcaB08g36413' => 'bca', 'BcaC01g02186' => 'bca', 'BcaC01g04272' => 'bca', 'BcaC02g08080' => 'bca', 'BcaC02g08227' => 'bca', 'BcaC03g13901' => 'bca', 'BcaC04g19593' => 'bca', 'BcaC04g20874' => 'bca', 'BcaC05g29557' => 'bca', 'BcaC06g35505' => 'bca', 'BcaC07g41954' => 'bca', 'BcaC07g41955' => 'bca', 'BcaC07g41956' => 'bca', 'BcaC07g42519' => 'bca', 'BcaC07g42520' => 'bca', 'BcaC07g42523' => 'bca', 'BcaC07g42524' => 'bca', 'BcaC07g42525' => 'bca', 'BcaC08g47480' => 'bca', 'BcaC08g47481' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00530' => 'bna', 'BolC2t07178H' => 'bol', 'BolC3t16567H' => 'bol', 'BolC4t27234H' => 'bol', 'BolC5t29728H' => 'bol', 'BolC5t34622H' => 'bol', 'BolC6t40321H' => 'bol', 'BolC7t42028H' => 'bol', 'BolC8t49125H' => 'bol', 'BolC8t52538H' => 'bol', 'BolC8t52539H' => 'bol', 'BolC9t56681H' => 'bol', 'BolC9t58266H' => 'bol', 'BolSC21t60294H' => 'bol', 'BraA02t05670Z' => 'bra', 'BraA03t12716Z' => 'bra', 'BraA04t17685Z' => 'bra', 'BraA05t22788Z' => 'bra', 'BraA06t24032Z' => 'bra', 'BraA06t25625Z' => 'bra', 'BraA07t27930Z' => 'bra', 'BraA08t35242Z' => 'bra', 'BraA09t38609Z' => 'bra', 'BraA10t43905Z' => 'bra', 'C02p11060' => 'bna', 'C03p42990' => 'bna', 'C03p67310' => 'bna', 'C04p56990' => 'bna', 'C04p58660' => 'bna', 'C05p09890' => 'bna', 'C05p59680' => 'bna', 'C06p19830' => 'bna', 'C06p53040' => 'bna', 'C07p15230' => 'bna', 'C08p50070' => 'bna', 'C08p50090' => 'bna', 'C09p38330' => 'bna', 'C09p53940' => 'bna', 'CAN.G1014.1' => 'can', 'CAN.G644.30' => 'can', 'CAN.G84.47' => 'can', 'CAN.G919.8' => 'can', 'CANSAT54G0113' => 'cansat', 'CANSAT54G1286' => 'cansat', 'CANSAT64G1020' => 'cansat', 'CARHR008080' => 'chi', 'CARHR008090' => 'chi', 'CARHR012130' => 'chi', 'CARHR038390' => 'chi', 'CARHR082330' => 'chi', 'CARHR120520' => 'chi', 'CARHR151470' => 'chi', 'CARHR190950' => 'chi', 'Carub.0001s0760' => 'cru', 'Carub.0001s1146' => 'cru', 'Carub.0003s0721' => 'cru', 'Carub.0004s0858' => 'cru', 'Carub.0005s1040' => 'cru', 'Carub.0006s2035' => 'cru', 'Carub.0015s0005' => 'cru', 'Ca_01607_v3' => 'car', 'Ca_01677_v3' => 'car', 'Ca_06087_v3' => 'car', 'Ca_19238_v3' => 'car', 'Ca_19373_v3' => 'car', 'Ca_21079_v3' => 'car', 'CBR_g54016' => 'cbr', 'CBR_g54018' => 'cbr', 'CBR_g54020' => 'cbr', 'Cc01_g09780' => 'ccan', 'Cc01_g11680' => 'ccan', 'Cc02_g15610' => 'ccan', 'Cc05_g04350' => 'ccan', 'Cc09_g01580' => 'ccan', 'CDE01G0795' => 'cde', 'CDE02G2024' => 'cde', 'CDE02G2260' => 'cde', 'CDE02G4561' => 'cde', 'CDE05G2733' => 'cde', 'CDE05G3422' => 'cde', 'CDE06G2003' => 'cde', 'CDE08G0576' => 'cde', 'CDE09G0048' => 'cde', 'CDE11G0805' => 'cde', 'Cfa003644' => 'cfa', 'Cfa006290' => 'cfa', 'Cfa010080' => 'cfa', 'Cfa011376' => 'cfa', 'Cfa011576' => 'cfa', 'Cfa011577' => 'cfa', 'Cfa014389' => 'cfa', 'Ciclev10006044m.g' => 'ccl', 'Ciclev10006954m.g' => 'ccl', 'Ciclev10015131m.g' => 'ccl', 'Ciclev10015580m.g' => 'ccl', 'Ciclev10028359m.g' => 'ccl', 'Ciclev10028573m.g' => 'ccl', 'CiPaw.03G159300' => 'cil', 'CiPaw.04G115100' => 'cil', 'CiPaw.09G092800' => 'cil', 'CiPaw.10G071800' => 'cil', 'CiPaw.13G105800' => 'cil', 'CiPaw.13G141000' => 'cil', 'CiPaw.14G103400' => 'cil', 'ClCG01G012700' => 'cla', 'ClCG01G012720' => 'cla', 'ClCG01G021920' => 'cla', 'ClCG02G008870' => 'cla', 'ClCG02G020840' => 'cla', 'ClCG02G021930' => 'cla', 'COL.COLO4_19302' => 'col', 'COL.COLO4_25262' => 'col', 'COL.COLO4_31788' => 'col', 'Cpa.g.c34684' => 'cpa', 'Cpa.g.c36520.1' => 'cpa', 'Cpa.g.c45626' => 'cpa', 'Cpa.g.sc121.17' => 'cpa', 'Cpa.g.sc13.22' => 'cpa', 'Cpa.g.sc87.88' => 'cpa', 'Cre06.g261800' => 'cre', 'CsaV3_1G014500' => 'csa', 'CsaV3_1G014510' => 'csa', 'CsaV3_2G034880' => 'csa', 'CsaV3_6G014760' => 'csa', 'CsaV3_6G021500' => 'csa', 'CsaV3_6G048980' => 'csa', 'CSS0002511' => 'camsi', 'CSS0007556' => 'camsi', 'CSS0008532' => 'camsi', 'CSS0009709' => 'camsi', 'CSS0010486' => 'camsi', 'CSS0016768' => 'camsi', 'CSS0023512' => 'camsi', 'CSS0025341' => 'camsi', 'CSS0027999' => 'camsi', 'CSS0028944' => 'camsi', 'CSS0032292' => 'camsi', 'CSS0032464' => 'camsi', 'CSS0037153' => 'camsi', 'CSS0039256' => 'camsi', 'CSS0048392' => 'camsi', 'CSS0050458' => 'camsi', 'DCAR_004224' => 'dca', 'DCAR_006147' => 'dca', 'DCAR_006465' => 'dca', 'DCAR_008159' => 'dca', 'DCAR_012164' => 'dca', 'DCAR_019764' => 'dca', 'Dinv05418' => 'din', 'Dinv10839' => 'din', 'Dinv12521' => 'din', 'Dinv13900' => 'din', 'Dinv29426' => 'din', 'Duzib150G0263' => 'dzi', 'Duzib168G1178' => 'dzi', 'Duzib168G1924' => 'dzi', 'Duzib170G0299' => 'dzi', 'Duzib170G0813' => 'dzi', 'Duzib235G1128' => 'dzi', 'Duzib248G1060' => 'dzi', 'ECA232G1910' => 'eca', 'ECA233G4621' => 'eca', 'ECA238G1216' => 'eca', 'ECA238G1784' => 'eca', 'ECA248G1242' => 'eca', 'EL10Ac8g20071' => 'bvu', 'EL10Ac9g21086' => 'bvu', 'EL10Ac9g22407' => 'bvu', 'EL10Ac9g22412' => 'bvu', 'Eucgr.A01119' => 'egr', 'Eucgr.E04043' => 'egr', 'Eucgr.J00428' => 'egr', 'Eucgr.J00958' => 'egr', 'FAN11G3091' => 'fan', 'FAN11G3651' => 'fan', 'FAN16G2566' => 'fan', 'FAN21G3155' => 'fan', 'FAN21G3400' => 'fan', 'FAN21G3543' => 'fan', 'FAN25G0234' => 'fan', 'FAN25G1422' => 'fan', 'FAN25G3392' => 'fan', 'FvH4_3g01940' => 'fve', 'FvH4_3g29870' => 'fve', 'FvH4_3g33680' => 'fve', 'Glyma.09G004200' => 'gma', 'Glyma.11G151288' => 'gma', 'Glyma.11G189100' => 'gma', 'Glyma.12G072500' => 'gma', 'Glyma.12G085500' => 'gma', 'Glyma.12G181800' => 'gma', 'Glyma.12G193000' => 'gma', 'Glyma.13G309300' => 'gma', 'Glyma.13G319000' => 'gma', 'Glyma.17G012600' => 'gma', 'Gohir.A06G148600' => 'ghi', 'Gohir.A07G115800' => 'ghi', 'Gohir.A08G003600' => 'ghi', 'Gohir.A09G093300' => 'ghi', 'Gohir.A09G105400' => 'ghi', 'Gohir.A09G105500' => 'ghi', 'Gohir.D06G154600' => 'ghi', 'Gohir.D07G120200' => 'ghi', 'Gohir.D08G013900' => 'ghi', 'Gohir.D09G093100' => 'ghi', 'Gohir.D09G102200' => 'ghi', 'Gohir.D09G102300' => 'ghi', 'Gorai.001G129400' => 'gra', 'Gorai.004G008200' => 'gra', 'Gorai.006G109800' => 'gra', 'Gorai.006G119500' => 'gra', 'Gorai.006G121300' => 'gra', 'Gorai.010G180700' => 'gra', 'GSVIVG01012716001' => 'vvi', 'GSVIVG01025118001' => 'vvi', 'GSVIVG01030439001' => 'vvi', 'GSVIVG01031397001' => 'vvi', 'HanXRQChr01g0004201' => 'han', 'HanXRQChr02g0054941' => 'han', 'HanXRQChr05g0141811' => 'han', 'HanXRQChr07g0197751' => 'han', 'HanXRQChr11g0346691' => 'han', 'HanXRQChr13g0396971' => 'han', 'HanXRQChr14g0432951' => 'han', 'HanXRQChr14g0452001' => 'han', 'HanXRQChr15g0496681' => 'han', 'HanXRQChr17g0557491' => 'han', 'HanXRQChr17g0557501' => 'han', 'Haze_06809' => 'cav', 'Haze_12852' => 'cav', 'Haze_15850' => 'cav', 'Haze_23446' => 'cav', 'Haze_23942' => 'cav', 'Haze_23943' => 'cav', 'Hma1.2p1_0091F.1_g046450' => 'hma', 'Hma1.2p1_0128F.1_g059910' => 'hma', 'Hma1.2p1_0249F.1_g102260' => 'hma', 'Hma1.2p1_0453F.1_g156190' => 'hma', 'Hma1.2p1_0695F.1_g204380' => 'hma', 'Hma1.2p1_0749F.1_g212650' => 'hma', 'Hma1.2p1_2156F.1_g315420' => 'hma', 'Hma1.2p1_2686F.1_g326940' => 'hma', 'HPP92_006428' => 'vpl', 'HPP92_012069' => 'vpl', 'HPP92_014129' => 'vpl', 'HPP92_014133' => 'vpl', 'HPP92_017315' => 'vpl', 'HPP92_026445' => 'vpl', 'HPP92_026446' => 'vpl', 'Hund00774' => 'sun', 'Hund07682' => 'sun', 'Hund21413' => 'sun', 'Hund23462' => 'sun', 'Hund23463' => 'sun', 'Lalb_Chr03g0027911' => 'lal', 'Lalb_Chr13g0304271' => 'lal', 'Lalb_Chr19g0137471' => 'lal', 'Lalb_Chr22g0350651' => 'lal', 'Lalb_Chr24g0395151' => 'lal', 'Lj1A1231T40' => 'lonja', 'Lj1A221T48' => 'lonja', 'Lj1C924T12' => 'lonja', 'Lj2C993G6' => 'lonja', 'Lj3g0005790' => 'lja', 'Lj3g0015432' => 'lja', 'Lj3g0017722' => 'lja', 'Lj3g0018497' => 'lja', 'Lj4g0025071' => 'lja', 'Lsat_1_v5_gn_1_129680' => 'lsa', 'Lsat_1_v5_gn_2_25321' => 'lsa', 'Lsat_1_v5_gn_2_95461' => 'lsa', 'Lsat_1_v5_gn_4_159620' => 'lsa', 'Lsat_1_v5_gn_6_41301' => 'lsa', 'Lsat_1_v5_gn_6_74660' => 'lsa', 'Lsat_1_v5_gn_7_11520' => 'lsa', 'Lsat_1_v5_gn_9_67680' => 'lsa', 'Manes.04G008300' => 'mes', 'Manes.04G008400' => 'mes', 'Manes.04G026500' => 'mes', 'Manes.10G135300' => 'mes', 'Manes.11G157300' => 'mes', 'Manes.12G074000' => 'mes', 'Manes.16G006200' => 'mes', 'Manes.17G026400' => 'mes', 'Mapoly0024s0086' => 'mpo', 'Mapoly0024s0087' => 'mpo', 'Mapoly0071s0057' => 'mpo', 'Mapoly0204s0012' => 'mpo', 'MBI04_g37681_MAGBIO' => 'mbi', 'MBI05_g17779_MAGBIO' => 'mbi', 'MBI12_g31184_MAGBIO' => 'mbi', 'MBI17_g11083_MAGBIO' => 'mbi', 'MBI18_g03883_MAGBIO' => 'mbi', 'MBI18_g28940_MAGBIO' => 'mbi', 'MCO01G690' => 'mco', 'MD03G1109900' => 'mdo', 'MD03G1134800' => 'mdo', 'MD05G1348000' => 'mdo', 'MD10G1322400' => 'mdo', 'MD11G1123300' => 'mdo', 'MD11G1157600' => 'mdo', 'Medtr2g084875' => 'mtr', 'Medtr2g088130' => 'mtr', 'Medtr4g055310' => 'mtr', 'Medtr4g061070' => 'mtr', 'Medtr4g132250' => 'mtr', 'MELO3C004795.2' => 'cme', 'MELO3C004797.2' => 'cme', 'MELO3C007396.2' => 'cme', 'MELO3C019277.2' => 'cme', 'MELO3C021449.2' => 'cme', 'MELO3C025736.2' => 'cme', 'Migut.D02175' => 'egut', 'Migut.H01573' => 'egut', 'Migut.M01327' => 'egut', 'Migut.N02513' => 'egut', 'MSTRG.14638' => 'ama', 'MSTRG.18632' => 'ama', 'MSTRG.7203' => 'ama', 'Nitab4.5_0000533g0140' => 'nta', 'Nitab4.5_0000888g0150' => 'nta', 'Nitab4.5_0001453g0040' => 'nta', 'Nitab4.5_0002827g0090' => 'nta', 'Nitab4.5_0003082g0040' => 'nta', 'Nitab4.5_0007799g0040' => 'nta', 'Nitab4.5_0008983g0010' => 'nta', 'Nitab4.5_0009017g0020' => 'nta', 'Nn1g02132' => 'nnu', 'Nn1g03492' => 'nnu', 'Nn1g03493' => 'nnu', 'Nn1g03494' => 'nnu', 'Nn1g07164' => 'nnu', 'Nn1g07291' => 'nnu', 'Nn2g10655' => 'nnu', 'Nn2g11652' => 'nnu', 'Nn2g14008' => 'nnu', 'Nn3g17476' => 'nnu', 'Nn3g17477' => 'nnu', 'Nn4g22370' => 'nnu', 'Nn4g25255' => 'nnu', 'Nn5g27755' => 'nnu', 'Nn6g34260' => 'nnu', 'Nn6g35041' => 'nnu', 'Oeu005924.1' => 'oeu', 'Oeu008383.1' => 'oeu', 'Oeu014928.1' => 'oeu', 'Oeu019889.1' => 'oeu', 'Oeu022271.1' => 'oeu', 'Oeu025271.1' => 'oeu', 'Oeu036302.1' => 'oeu', 'Oeu044100.1' => 'oeu', 'Os01g0528300' => 'osa', 'Os03g0286200' => 'osa', 'Os04g0406600' => 'osa', 'Os07g0512000' => 'osa', 'Os07g0694600' => 'osa', 'Os08g0411000' => 'osa', 'Os09g0565700' => 'osa', 'Os09g0566050' => 'osa', 'Os10g0523700' => 'osa', 'Peaxi162Scf00002g00514' => 'pax', 'Peaxi162Scf00047g01817' => 'pax', 'Peaxi162Scf00114g00001' => 'pax', 'Peaxi162Scf00147g00613' => 'pax', 'Peaxi162Scf00389g00425' => 'pax', 'PGR042G1139' => 'pgr', 'PGR042G3273' => 'pgr', 'PGR102G2180' => 'pgr', 'PGR119G0234' => 'pgr', 'PGR119G0668' => 'pgr', 'PGSC0003DMG400007122' => 'stu', 'PGSC0003DMG400016478' => 'stu', 'PGSC0003DMG400025374' => 'stu', 'PGSC0003DMG400026536' => 'stu', 'Phvul.003G079600' => 'pvu', 'Phvul.005G115600' => 'pvu', 'Phvul.005G127100' => 'pvu', 'Phvul.006G149500' => 'pvu', 'Phvul.006G149600' => 'pvu', 'Phvul.011G071800' => 'pvu', 'Phvul.011G090400' => 'pvu', 'Potri.004G013400' => 'ptr', 'Potri.004G188100' => 'ptr', 'Potri.008G195500' => 'ptr', 'Potri.009G148800' => 'ptr', 'Potri.011G004700' => 'ptr', 'Pp3c17_22810' => 'ppa', 'Pp3c18_4480' => 'ppa', 'Pp3c19_13030' => 'ppa', 'Pp3c1_33620' => 'ppa', 'Pp3c2_9380' => 'ppa', 'PRCOL_00001023' => 'pco', 'Prupe.3G216300' => 'ppe', 'Prupe.4G019500' => 'ppe', 'Prupe.6G092500' => 'ppe', 'Prupe.6G119200' => 'ppe', 'Psat0s1945g0080' => 'psa', 'Psat0s4167g0040' => 'psa', 'Psat1g185800' => 'psa', 'Psat4g006440' => 'psa', 'Psat4g006480' => 'psa', 'Psat4g168120' => 'psa', 'Psat5g255680' => 'psa', 'Psat5g261760' => 'psa', 'Psat7g222120' => 'psa', 'PSO063G7252' => 'pso', 'PSO170G4778' => 'pso', 'PSO210G2249' => 'pso', 'PSO339G2411' => 'pso', 'PSO339G2457' => 'pso', 'PSO339G2854' => 'pso', 'PSO339G4288' => 'pso', 'PSO339G4615' => 'pso', 'PSO384G2796' => 'pso', 'PSO384G2940' => 'pso', 'PSO384G4227' => 'pso', 'PSO478G1425' => 'pso', 'PSO541G3863' => 'pso', 'PSO675G0507' => 'pso', 'PSO782G0338' => 'pso', 'PSO832G0644' => 'pso', 'QL01p013664' => 'qlo', 'QL01p036598' => 'qlo', 'QL05p072984' => 'qlo', 'QL08p005768' => 'qlo', 'QL08p032743' => 'qlo', 'QL93p0073_0439' => 'qlo', 'QL93p0073_0444' => 'qlo', 'RcHm_v2.0_Chr5g0002851' => 'rch', 'RcHm_v2.0_Chr5g0055201' => 'rch', 'RcHm_v2.0_Chr5g0061191' => 'rch', 'RcHm_v2.0_Chr7g0203231' => 'rch', 'Rhsim01G0208100' => 'rsi', 'Rhsim01G0208200' => 'rsi', 'Rhsim02G0106500' => 'rsi', 'Rhsim03G0107900' => 'rsi', 'Rhsim06G0163400' => 'rsi', 'Rhsim13G0105200' => 'rsi', 'Sabra04G0006300' => 'sbr', 'Sabra04G0127000' => 'sbr', 'Sabra08G0148700' => 'sbr', 'Sabra09G0117400' => 'sbr', 'SalBow1G3326' => 'sbo', 'SalBow3G3228' => 'sbo', 'SalBow6G1634' => 'sbo', 'SalBow6G3603' => 'sbo', 'SalBow6G5266' => 'sbo', 'SalBow7G2265' => 'sbo', 'SalBow8G0850' => 'sbo', 'SalBow8G2592' => 'sbo', 'Sc05g0009240' => 'sci', 'Sc12g0002300' => 'sci', 'Sc21g0000100' => 'sci', 'Sc21g0004720' => 'sci', 'Sed0002949' => 'sed', 'Sed0004114' => 'sed', 'Sed0004306' => 'sed', 'Sed0006172' => 'sed', 'Sed0008413' => 'sed', 'Sed0013809' => 'sed', 'Sed0019556' => 'sed', 'SEGI_03570' => 'sgi', 'SEGI_07859' => 'sgi', 'SEGI_15042' => 'sgi', 'SEGI_16263' => 'sgi', 'SEGI_16552' => 'sgi', 'SEGI_24331' => 'sgi', 'SEGI_27316' => 'sgi', 'SEGI_29521' => 'sgi', 'SEGI_41342' => 'sgi', 'SGA_v2.0_scaffold27G11617' => 'sas', 'SGA_v2.0_scaffold316G48428' => 'sas', 'SGA_v2.0_scaffold49G18261' => 'sas', 'SGA_v2.0_scaffold7G03831' => 'sas', 'SGA_v2.0_scaffold93G28359' => 'sas', 'SHI02210' => 'shi', 'SHI06028' => 'shi', 'SHI06321' => 'shi', 'SMO111G0012' => 'smo', 'SMO228G0080' => 'smo', 'SMO356G0756' => 'smo', 'Solyc02g080620.3' => 'sly', 'Solyc06g074530.1' => 'sly', 'Solyc11g066890.1' => 'sly', 'Solyc11g072520.3' => 'sly', 'Sopen02g025330' => 'spe', 'Sopen06g031000' => 'spe', 'Sopen09g008240' => 'spe', 'Sopen09g025210' => 'spe', 'Sopen11g026600' => 'spe', 'Sopen11g030170' => 'spe', 'Sp1g10420' => 'spa', 'Sp3g06570' => 'spa', 'Sp4g10660' => 'spa', 'Sp5g16460' => 'spa', 'Sp6g22710' => 'spa', 'TAR365G0112' => 'tar', 'TAR369G0717' => 'tar', 'TAR374G0976' => 'tar', 'TAR623G1128' => 'tar', 'TAR626G1937' => 'tar', 'TAR627G0123' => 'tar', 'TAR628G0305' => 'tar', 'TAR636G1176' => 'tar', 'TAR636G2442' => 'tar', 'THA.LOC104800556' => 'tha', 'THA.LOC104809501' => 'tha', 'THA.LOC104815126' => 'tha', 'THA.LOC104815732' => 'tha', 'THA.LOC104823528' => 'tha', 'Thecc.02G365600' => 'tca', 'Thecc.06G222300' => 'tca', 'Thecc.09G261800' => 'tca', 'Thecc.09G291400' => 'tca', 'Thhalv10003028m.g' => 'esa', 'Thhalv10007886m.g' => 'esa', 'Thhalv10016085m.g' => 'esa', 'Thhalv10016681m.g' => 'esa', 'Thhalv10020951m.g' => 'esa', 'TPR.G15598' => 'tpr', 'TPR.G29305' => 'tpr', 'TPR.G32395' => 'tpr', 'TPR.G36998' => 'tpr', 'TPR.G4227' => 'tpr', 'TWI18G1433' => 'twi', 'TWI31G0755' => 'twi', 'TWI38G0912' => 'twi', 'TWI75G1097' => 'twi', 'TWI75G1619' => 'twi', 'TWI79G1336' => 'twi', 'unitig_0.g943' => 'ugi', 'unitig_0.g944' => 'ugi', 'unitig_22.g6646' => 'ugi', 'unitig_37.g12681' => 'ugi', 'unitig_8.g3290' => 'ugi', 'vmacro03278' => 'vma', 'vmacro12197' => 'vma', 'vmacro14478' => 'vma', 'vmacro15787' => 'vma', 'vmacro15789' => 'vma', 'vmacro15790' => 'vma', 'vmacro15806' => 'vma', 'vmacro22907' => 'vma', 'vmacro22908' => 'vma', 'vmacro22909' => 'vma', 'vmacro23108' => 'vma', 'VMungo0540G0540' => 'vmu', 'VMungo0540G2468' => 'vmu', 'VMungo1080G0390' => 'vmu', 'VMungo1080G1165' => 'vmu', 'VMungo1127G0170' => 'vmu', 'VMungo1127G2099' => 'vmu', 'VMungo1215G3013' => 'vmu', 'Zm00001eb013110' => 'zma', 'Zm00001eb084260' => 'zma', 'Zm00001eb096110' => 'zma', 'Zm00001eb217510' => 'zma', 'Zm00001eb322550' => 'zma', 'Zm00001eb390770' => 'zma', 'Zm00001eb397170' => 'zma', 'Zm00001eb404610' => 'zma', 'Zm00001eb421790' => 'zma' ), 'gf_id' => 'HOM05D000911', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000911' ), 'data_identifier' => 'HOM05D000911', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000911', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27780' => 'bna', 'A03p35380' => 'bna', 'A04p21160' => 'bna', 'A05p40570' => 'bna', 'A06p26900' => 'bna', 'A08p33230' => 'bna', 'A09p65960' => 'bna', 'A10p18290' => 'bna', 'Aa31LG1G12990' => 'aar', 'Aa31LG1G2980' => 'aar', 'Aa31LG4G14320' => 'aar', 'Aa31LG7G11800' => 'aar', 'Aa31sc36G50' => 'aar', 'Aa31sc36G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3721' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5459' => 'aag', 'Actinidia03028' => 'ach', 'Actinidia03753' => 'ach', 'Actinidia04187' => 'ach', 'Actinidia05509' => 'ach', 'Actinidia24180' => 'ach', 'Actinidia26906' => 'ach', 'Actinidia37097' => 'ach', 'Actinidia38249' => 'ach', 'Ah.01g003470' => 'amhyb', 'Ah.01g004580' => 'amhyb', 'Ah.01g014850' => 'amhyb', 'Ah.01g016830' => 'amhyb', 'Ah.14g088000' => 'amhyb', 'AL1G22980' => 'aly', 'AL3G18990' => 'aly', 'AL4G22440' => 'aly', 'AL4G33180' => 'aly', 'AL5G22920' => 'aly', 'AL6G33660' => 'aly', 'AL8G20720' => 'aly', 'Aqoxy1G00935' => 'aox', 'Aqoxy1G02094' => 'aox', 'Aqoxy2G01239' => 'aox', 'Aqoxy4G01870' => 'aox', 'Aqoxy7G00450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.36ZVTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71EM27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5D6C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH3WRE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3NCM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RIM768' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YB5YRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z36GDV' => 'arhy', 'AT1G08250' => 'ath', 'AT1G11790' => 'ath', 'AT2G27820' => 'ath', 'AT3G07630' => 'ath', 'AT3G44720' => 'ath', 'AT5G22630' => 'ath', 'ATR0693G304' => 'atr', 'ATR0794G109' => 'atr', 'ATR0820G120' => 'atr', 'ATR1159G064' => 'atr', 'Atru.chr10.2239' => 'acertr', 'Atru.chr3.3371' => 'acertr', 'Atru.chr6.3202' => 'acertr', 'AUR62006499' => 'cqu', 'AUR62012718' => 'cqu', 'AUR62021938' => 'cqu', 'AUR62023932' => 'cqu', 'AUR62025034' => 'cqu', 'AUR62025035' => 'cqu', 'AUR62038307' => 'cqu', 'AUR62043466' => 'cqu', 'BcaB02g10748' => 'bca', 'BcaB03g13231' => 'bca', 'BcaB03g14689' => 'bca', 'BcaB05g22716' => 'bca', 'BcaB06g28172' => 'bca', 'BcaB08g36413' => 'bca', 'BcaC01g02186' => 'bca', 'BcaC01g04272' => 'bca', 'BcaC02g08080' => 'bca', 'BcaC02g08227' => 'bca', 'BcaC03g13901' => 'bca', 'BcaC04g19593' => 'bca', 'BcaC04g20874' => 'bca', 'BcaC05g29557' => 'bca', 'BcaC06g35505' => 'bca', 'BcaC07g41954' => 'bca', 'BcaC07g41955' => 'bca', 'BcaC07g41956' => 'bca', 'BcaC07g42519' => 'bca', 'BcaC07g42520' => 'bca', 'BcaC07g42523' => 'bca', 'BcaC07g42524' => 'bca', 'BcaC07g42525' => 'bca', 'BcaC08g47480' => 'bca', 'BcaC08g47481' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00530' => 'bna', 'BolC2t07178H' => 'bol', 'BolC3t16567H' => 'bol', 'BolC4t27234H' => 'bol', 'BolC5t29728H' => 'bol', 'BolC5t34622H' => 'bol', 'BolC6t40321H' => 'bol', 'BolC7t42028H' => 'bol', 'BolC8t49125H' => 'bol', 'BolC8t52538H' => 'bol', 'BolC8t52539H' => 'bol', 'BolC9t56681H' => 'bol', 'BolC9t58266H' => 'bol', 'BolSC21t60294H' => 'bol', 'BraA02t05670Z' => 'bra', 'BraA03t12716Z' => 'bra', 'BraA04t17685Z' => 'bra', 'BraA05t22788Z' => 'bra', 'BraA06t24032Z' => 'bra', 'BraA06t25625Z' => 'bra', 'BraA07t27930Z' => 'bra', 'BraA08t35242Z' => 'bra', 'BraA09t38609Z' => 'bra', 'BraA10t43905Z' => 'bra', 'C02p11060' => 'bna', 'C03p42990' => 'bna', 'C03p67310' => 'bna', 'C04p56990' => 'bna', 'C04p58660' => 'bna', 'C05p09890' => 'bna', 'C05p59680' => 'bna', 'C06p19830' => 'bna', 'C06p53040' => 'bna', 'C07p15230' => 'bna', 'C08p50070' => 'bna', 'C08p50090' => 'bna', 'C09p38330' => 'bna', 'C09p53940' => 'bna', 'CAN.G1014.1' => 'can', 'CAN.G644.30' => 'can', 'CAN.G84.47' => 'can', 'CAN.G919.8' => 'can', 'CANSAT54G0113' => 'cansat', 'CANSAT54G1286' => 'cansat', 'CANSAT64G1020' => 'cansat', 'CARHR008080' => 'chi', 'CARHR008090' => 'chi', 'CARHR012130' => 'chi', 'CARHR038390' => 'chi', 'CARHR082330' => 'chi', 'CARHR120520' => 'chi', 'CARHR151470' => 'chi', 'CARHR190950' => 'chi', 'Carub.0001s0760' => 'cru', 'Carub.0001s1146' => 'cru', 'Carub.0003s0721' => 'cru', 'Carub.0004s0858' => 'cru', 'Carub.0005s1040' => 'cru', 'Carub.0006s2035' => 'cru', 'Carub.0015s0005' => 'cru', 'Ca_01607_v3' => 'car', 'Ca_01677_v3' => 'car', 'Ca_06087_v3' => 'car', 'Ca_19238_v3' => 'car', 'Ca_19373_v3' => 'car', 'Ca_21079_v3' => 'car', 'CBR_g54016' => 'cbr', 'CBR_g54018' => 'cbr', 'CBR_g54020' => 'cbr', 'Cc01_g09780' => 'ccan', 'Cc01_g11680' => 'ccan', 'Cc02_g15610' => 'ccan', 'Cc05_g04350' => 'ccan', 'Cc09_g01580' => 'ccan', 'CDE01G0795' => 'cde', 'CDE02G2024' => 'cde', 'CDE02G2260' => 'cde', 'CDE02G4561' => 'cde', 'CDE05G2733' => 'cde', 'CDE05G3422' => 'cde', 'CDE06G2003' => 'cde', 'CDE08G0576' => 'cde', 'CDE09G0048' => 'cde', 'CDE11G0805' => 'cde', 'Cfa003644' => 'cfa', 'Cfa006290' => 'cfa', 'Cfa010080' => 'cfa', 'Cfa011376' => 'cfa', 'Cfa011576' => 'cfa', 'Cfa011577' => 'cfa', 'Cfa014389' => 'cfa', 'Ciclev10006044m.g' => 'ccl', 'Ciclev10006954m.g' => 'ccl', 'Ciclev10015131m.g' => 'ccl', 'Ciclev10015580m.g' => 'ccl', 'Ciclev10028359m.g' => 'ccl', 'Ciclev10028573m.g' => 'ccl', 'CiPaw.03G159300' => 'cil', 'CiPaw.04G115100' => 'cil', 'CiPaw.09G092800' => 'cil', 'CiPaw.10G071800' => 'cil', 'CiPaw.13G105800' => 'cil', 'CiPaw.13G141000' => 'cil', 'CiPaw.14G103400' => 'cil', 'ClCG01G012700' => 'cla', 'ClCG01G012720' => 'cla', 'ClCG01G021920' => 'cla', 'ClCG02G008870' => 'cla', 'ClCG02G020840' => 'cla', 'ClCG02G021930' => 'cla', 'COL.COLO4_19302' => 'col', 'COL.COLO4_25262' => 'col', 'COL.COLO4_31788' => 'col', 'Cpa.g.c34684' => 'cpa', 'Cpa.g.c36520.1' => 'cpa', 'Cpa.g.c45626' => 'cpa', 'Cpa.g.sc121.17' => 'cpa', 'Cpa.g.sc13.22' => 'cpa', 'Cpa.g.sc87.88' => 'cpa', 'Cre06.g261800' => 'cre', 'CsaV3_1G014500' => 'csa', 'CsaV3_1G014510' => 'csa', 'CsaV3_2G034880' => 'csa', 'CsaV3_6G014760' => 'csa', 'CsaV3_6G021500' => 'csa', 'CsaV3_6G048980' => 'csa', 'CSS0002511' => 'camsi', 'CSS0007556' => 'camsi', 'CSS0008532' => 'camsi', 'CSS0009709' => 'camsi', 'CSS0010486' => 'camsi', 'CSS0016768' => 'camsi', 'CSS0023512' => 'camsi', 'CSS0025341' => 'camsi', 'CSS0027999' => 'camsi', 'CSS0028944' => 'camsi', 'CSS0032292' => 'camsi', 'CSS0032464' => 'camsi', 'CSS0037153' => 'camsi', 'CSS0039256' => 'camsi', 'CSS0048392' => 'camsi', 'CSS0050458' => 'camsi', 'DCAR_004224' => 'dca', 'DCAR_006147' => 'dca', 'DCAR_006465' => 'dca', 'DCAR_008159' => 'dca', 'DCAR_012164' => 'dca', 'DCAR_019764' => 'dca', 'Dinv05418' => 'din', 'Dinv10839' => 'din', 'Dinv12521' => 'din', 'Dinv13900' => 'din', 'Dinv29426' => 'din', 'Duzib150G0263' => 'dzi', 'Duzib168G1178' => 'dzi', 'Duzib168G1924' => 'dzi', 'Duzib170G0299' => 'dzi', 'Duzib170G0813' => 'dzi', 'Duzib235G1128' => 'dzi', 'Duzib248G1060' => 'dzi', 'ECA232G1910' => 'eca', 'ECA233G4621' => 'eca', 'ECA238G1216' => 'eca', 'ECA238G1784' => 'eca', 'ECA248G1242' => 'eca', 'EL10Ac8g20071' => 'bvu', 'EL10Ac9g21086' => 'bvu', 'EL10Ac9g22407' => 'bvu', 'EL10Ac9g22412' => 'bvu', 'Eucgr.A01119' => 'egr', 'Eucgr.E04043' => 'egr', 'Eucgr.J00428' => 'egr', 'Eucgr.J00958' => 'egr', 'FAN11G3091' => 'fan', 'FAN11G3651' => 'fan', 'FAN16G2566' => 'fan', 'FAN21G3155' => 'fan', 'FAN21G3400' => 'fan', 'FAN21G3543' => 'fan', 'FAN25G0234' => 'fan', 'FAN25G1422' => 'fan', 'FAN25G3392' => 'fan', 'FvH4_3g01940' => 'fve', 'FvH4_3g29870' => 'fve', 'FvH4_3g33680' => 'fve', 'Glyma.09G004200' => 'gma', 'Glyma.11G151288' => 'gma', 'Glyma.11G189100' => 'gma', 'Glyma.12G072500' => 'gma', 'Glyma.12G085500' => 'gma', 'Glyma.12G181800' => 'gma', 'Glyma.12G193000' => 'gma', 'Glyma.13G309300' => 'gma', 'Glyma.13G319000' => 'gma', 'Glyma.17G012600' => 'gma', 'Gohir.A06G148600' => 'ghi', 'Gohir.A07G115800' => 'ghi', 'Gohir.A08G003600' => 'ghi', 'Gohir.A09G093300' => 'ghi', 'Gohir.A09G105400' => 'ghi', 'Gohir.A09G105500' => 'ghi', 'Gohir.D06G154600' => 'ghi', 'Gohir.D07G120200' => 'ghi', 'Gohir.D08G013900' => 'ghi', 'Gohir.D09G093100' => 'ghi', 'Gohir.D09G102200' => 'ghi', 'Gohir.D09G102300' => 'ghi', 'Gorai.001G129400' => 'gra', 'Gorai.004G008200' => 'gra', 'Gorai.006G109800' => 'gra', 'Gorai.006G119500' => 'gra', 'Gorai.006G121300' => 'gra', 'Gorai.010G180700' => 'gra', 'GSVIVG01012716001' => 'vvi', 'GSVIVG01025118001' => 'vvi', 'GSVIVG01030439001' => 'vvi', 'GSVIVG01031397001' => 'vvi', 'HanXRQChr01g0004201' => 'han', 'HanXRQChr02g0054941' => 'han', 'HanXRQChr05g0141811' => 'han', 'HanXRQChr07g0197751' => 'han', 'HanXRQChr11g0346691' => 'han', 'HanXRQChr13g0396971' => 'han', 'HanXRQChr14g0432951' => 'han', 'HanXRQChr14g0452001' => 'han', 'HanXRQChr15g0496681' => 'han', 'HanXRQChr17g0557491' => 'han', 'HanXRQChr17g0557501' => 'han', 'Haze_06809' => 'cav', 'Haze_12852' => 'cav', 'Haze_15850' => 'cav', 'Haze_23446' => 'cav', 'Haze_23942' => 'cav', 'Haze_23943' => 'cav', 'Hma1.2p1_0091F.1_g046450' => 'hma', 'Hma1.2p1_0128F.1_g059910' => 'hma', 'Hma1.2p1_0249F.1_g102260' => 'hma', 'Hma1.2p1_0453F.1_g156190' => 'hma', 'Hma1.2p1_0695F.1_g204380' => 'hma', 'Hma1.2p1_0749F.1_g212650' => 'hma', 'Hma1.2p1_2156F.1_g315420' => 'hma', 'Hma1.2p1_2686F.1_g326940' => 'hma', 'HPP92_006428' => 'vpl', 'HPP92_012069' => 'vpl', 'HPP92_014129' => 'vpl', 'HPP92_014133' => 'vpl', 'HPP92_017315' => 'vpl', 'HPP92_026445' => 'vpl', 'HPP92_026446' => 'vpl', 'Hund00774' => 'sun', 'Hund07682' => 'sun', 'Hund21413' => 'sun', 'Hund23462' => 'sun', 'Hund23463' => 'sun', 'Lalb_Chr03g0027911' => 'lal', 'Lalb_Chr13g0304271' => 'lal', 'Lalb_Chr19g0137471' => 'lal', 'Lalb_Chr22g0350651' => 'lal', 'Lalb_Chr24g0395151' => 'lal', 'Lj1A1231T40' => 'lonja', 'Lj1A221T48' => 'lonja', 'Lj1C924T12' => 'lonja', 'Lj2C993G6' => 'lonja', 'Lj3g0005790' => 'lja', 'Lj3g0015432' => 'lja', 'Lj3g0017722' => 'lja', 'Lj3g0018497' => 'lja', 'Lj4g0025071' => 'lja', 'Lsat_1_v5_gn_1_129680' => 'lsa', 'Lsat_1_v5_gn_2_25321' => 'lsa', 'Lsat_1_v5_gn_2_95461' => 'lsa', 'Lsat_1_v5_gn_4_159620' => 'lsa', 'Lsat_1_v5_gn_6_41301' => 'lsa', 'Lsat_1_v5_gn_6_74660' => 'lsa', 'Lsat_1_v5_gn_7_11520' => 'lsa', 'Lsat_1_v5_gn_9_67680' => 'lsa', 'Manes.04G008300' => 'mes', 'Manes.04G008400' => 'mes', 'Manes.04G026500' => 'mes', 'Manes.10G135300' => 'mes', 'Manes.11G157300' => 'mes', 'Manes.12G074000' => 'mes', 'Manes.16G006200' => 'mes', 'Manes.17G026400' => 'mes', 'Mapoly0024s0086' => 'mpo', 'Mapoly0024s0087' => 'mpo', 'Mapoly0071s0057' => 'mpo', 'Mapoly0204s0012' => 'mpo', 'MBI04_g37681_MAGBIO' => 'mbi', 'MBI05_g17779_MAGBIO' => 'mbi', 'MBI12_g31184_MAGBIO' => 'mbi', 'MBI17_g11083_MAGBIO' => 'mbi', 'MBI18_g03883_MAGBIO' => 'mbi', 'MBI18_g28940_MAGBIO' => 'mbi', 'MCO01G690' => 'mco', 'MD03G1109900' => 'mdo', 'MD03G1134800' => 'mdo', 'MD05G1348000' => 'mdo', 'MD10G1322400' => 'mdo', 'MD11G1123300' => 'mdo', 'MD11G1157600' => 'mdo', 'Medtr2g084875' => 'mtr', 'Medtr2g088130' => 'mtr', 'Medtr4g055310' => 'mtr', 'Medtr4g061070' => 'mtr', 'Medtr4g132250' => 'mtr', 'MELO3C004795.2' => 'cme', 'MELO3C004797.2' => 'cme', 'MELO3C007396.2' => 'cme', 'MELO3C019277.2' => 'cme', 'MELO3C021449.2' => 'cme', 'MELO3C025736.2' => 'cme', 'Migut.D02175' => 'egut', 'Migut.H01573' => 'egut', 'Migut.M01327' => 'egut', 'Migut.N02513' => 'egut', 'MSTRG.14638' => 'ama', 'MSTRG.18632' => 'ama', 'MSTRG.7203' => 'ama', 'Nitab4.5_0000533g0140' => 'nta', 'Nitab4.5_0000888g0150' => 'nta', 'Nitab4.5_0001453g0040' => 'nta', 'Nitab4.5_0002827g0090' => 'nta', 'Nitab4.5_0003082g0040' => 'nta', 'Nitab4.5_0007799g0040' => 'nta', 'Nitab4.5_0008983g0010' => 'nta', 'Nitab4.5_0009017g0020' => 'nta', 'Nn1g02132' => 'nnu', 'Nn1g03492' => 'nnu', 'Nn1g03493' => 'nnu', 'Nn1g03494' => 'nnu', 'Nn1g07164' => 'nnu', 'Nn1g07291' => 'nnu', 'Nn2g10655' => 'nnu', 'Nn2g11652' => 'nnu', 'Nn2g14008' => 'nnu', 'Nn3g17476' => 'nnu', 'Nn3g17477' => 'nnu', 'Nn4g22370' => 'nnu', 'Nn4g25255' => 'nnu', 'Nn5g27755' => 'nnu', 'Nn6g34260' => 'nnu', 'Nn6g35041' => 'nnu', 'Oeu005924.1' => 'oeu', 'Oeu008383.1' => 'oeu', 'Oeu014928.1' => 'oeu', 'Oeu019889.1' => 'oeu', 'Oeu022271.1' => 'oeu', 'Oeu025271.1' => 'oeu', 'Oeu036302.1' => 'oeu', 'Oeu044100.1' => 'oeu', 'Os01g0528300' => 'osa', 'Os03g0286200' => 'osa', 'Os04g0406600' => 'osa', 'Os07g0512000' => 'osa', 'Os07g0694600' => 'osa', 'Os08g0411000' => 'osa', 'Os09g0565700' => 'osa', 'Os09g0566050' => 'osa', 'Os10g0523700' => 'osa', 'Peaxi162Scf00002g00514' => 'pax', 'Peaxi162Scf00047g01817' => 'pax', 'Peaxi162Scf00114g00001' => 'pax', 'Peaxi162Scf00147g00613' => 'pax', 'Peaxi162Scf00389g00425' => 'pax', 'PGR042G1139' => 'pgr', 'PGR042G3273' => 'pgr', 'PGR102G2180' => 'pgr', 'PGR119G0234' => 'pgr', 'PGR119G0668' => 'pgr', 'PGSC0003DMG400007122' => 'stu', 'PGSC0003DMG400016478' => 'stu', 'PGSC0003DMG400025374' => 'stu', 'PGSC0003DMG400026536' => 'stu', 'Phvul.003G079600' => 'pvu', 'Phvul.005G115600' => 'pvu', 'Phvul.005G127100' => 'pvu', 'Phvul.006G149500' => 'pvu', 'Phvul.006G149600' => 'pvu', 'Phvul.011G071800' => 'pvu', 'Phvul.011G090400' => 'pvu', 'Potri.004G013400' => 'ptr', 'Potri.004G188100' => 'ptr', 'Potri.008G195500' => 'ptr', 'Potri.009G148800' => 'ptr', 'Potri.011G004700' => 'ptr', 'Pp3c17_22810' => 'ppa', 'Pp3c18_4480' => 'ppa', 'Pp3c19_13030' => 'ppa', 'Pp3c1_33620' => 'ppa', 'Pp3c2_9380' => 'ppa', 'PRCOL_00001023' => 'pco', 'Prupe.3G216300' => 'ppe', 'Prupe.4G019500' => 'ppe', 'Prupe.6G092500' => 'ppe', 'Prupe.6G119200' => 'ppe', 'Psat0s1945g0080' => 'psa', 'Psat0s4167g0040' => 'psa', 'Psat1g185800' => 'psa', 'Psat4g006440' => 'psa', 'Psat4g006480' => 'psa', 'Psat4g168120' => 'psa', 'Psat5g255680' => 'psa', 'Psat5g261760' => 'psa', 'Psat7g222120' => 'psa', 'PSO063G7252' => 'pso', 'PSO170G4778' => 'pso', 'PSO210G2249' => 'pso', 'PSO339G2411' => 'pso', 'PSO339G2457' => 'pso', 'PSO339G2854' => 'pso', 'PSO339G4288' => 'pso', 'PSO339G4615' => 'pso', 'PSO384G2796' => 'pso', 'PSO384G2940' => 'pso', 'PSO384G4227' => 'pso', 'PSO478G1425' => 'pso', 'PSO541G3863' => 'pso', 'PSO675G0507' => 'pso', 'PSO782G0338' => 'pso', 'PSO832G0644' => 'pso', 'QL01p013664' => 'qlo', 'QL01p036598' => 'qlo', 'QL05p072984' => 'qlo', 'QL08p005768' => 'qlo', 'QL08p032743' => 'qlo', 'QL93p0073_0439' => 'qlo', 'QL93p0073_0444' => 'qlo', 'RcHm_v2.0_Chr5g0002851' => 'rch', 'RcHm_v2.0_Chr5g0055201' => 'rch', 'RcHm_v2.0_Chr5g0061191' => 'rch', 'RcHm_v2.0_Chr7g0203231' => 'rch', 'Rhsim01G0208100' => 'rsi', 'Rhsim01G0208200' => 'rsi', 'Rhsim02G0106500' => 'rsi', 'Rhsim03G0107900' => 'rsi', 'Rhsim06G0163400' => 'rsi', 'Rhsim13G0105200' => 'rsi', 'Sabra04G0006300' => 'sbr', 'Sabra04G0127000' => 'sbr', 'Sabra08G0148700' => 'sbr', 'Sabra09G0117400' => 'sbr', 'SalBow1G3326' => 'sbo', 'SalBow3G3228' => 'sbo', 'SalBow6G1634' => 'sbo', 'SalBow6G3603' => 'sbo', 'SalBow6G5266' => 'sbo', 'SalBow7G2265' => 'sbo', 'SalBow8G0850' => 'sbo', 'SalBow8G2592' => 'sbo', 'Sc05g0009240' => 'sci', 'Sc12g0002300' => 'sci', 'Sc21g0000100' => 'sci', 'Sc21g0004720' => 'sci', 'Sed0002949' => 'sed', 'Sed0004114' => 'sed', 'Sed0004306' => 'sed', 'Sed0006172' => 'sed', 'Sed0008413' => 'sed', 'Sed0013809' => 'sed', 'Sed0019556' => 'sed', 'SEGI_03570' => 'sgi', 'SEGI_07859' => 'sgi', 'SEGI_15042' => 'sgi', 'SEGI_16263' => 'sgi', 'SEGI_16552' => 'sgi', 'SEGI_24331' => 'sgi', 'SEGI_27316' => 'sgi', 'SEGI_29521' => 'sgi', 'SEGI_41342' => 'sgi', 'SGA_v2.0_scaffold27G11617' => 'sas', 'SGA_v2.0_scaffold316G48428' => 'sas', 'SGA_v2.0_scaffold49G18261' => 'sas', 'SGA_v2.0_scaffold7G03831' => 'sas', 'SGA_v2.0_scaffold93G28359' => 'sas', 'SHI02210' => 'shi', 'SHI06028' => 'shi', 'SHI06321' => 'shi', 'SMO111G0012' => 'smo', 'SMO228G0080' => 'smo', 'SMO356G0756' => 'smo', 'Solyc02g080620.3' => 'sly', 'Solyc06g074530.1' => 'sly', 'Solyc11g066890.1' => 'sly', 'Solyc11g072520.3' => 'sly', 'Sopen02g025330' => 'spe', 'Sopen06g031000' => 'spe', 'Sopen09g008240' => 'spe', 'Sopen09g025210' => 'spe', 'Sopen11g026600' => 'spe', 'Sopen11g030170' => 'spe', 'Sp1g10420' => 'spa', 'Sp3g06570' => 'spa', 'Sp4g10660' => 'spa', 'Sp5g16460' => 'spa', 'Sp6g22710' => 'spa', 'TAR365G0112' => 'tar', 'TAR369G0717' => 'tar', 'TAR374G0976' => 'tar', 'TAR623G1128' => 'tar', 'TAR626G1937' => 'tar', 'TAR627G0123' => 'tar', 'TAR628G0305' => 'tar', 'TAR636G1176' => 'tar', 'TAR636G2442' => 'tar', 'THA.LOC104800556' => 'tha', 'THA.LOC104809501' => 'tha', 'THA.LOC104815126' => 'tha', 'THA.LOC104815732' => 'tha', 'THA.LOC104823528' => 'tha', 'Thecc.02G365600' => 'tca', 'Thecc.06G222300' => 'tca', 'Thecc.09G261800' => 'tca', 'Thecc.09G291400' => 'tca', 'Thhalv10003028m.g' => 'esa', 'Thhalv10007886m.g' => 'esa', 'Thhalv10016085m.g' => 'esa', 'Thhalv10016681m.g' => 'esa', 'Thhalv10020951m.g' => 'esa', 'TPR.G15598' => 'tpr', 'TPR.G29305' => 'tpr', 'TPR.G32395' => 'tpr', 'TPR.G36998' => 'tpr', 'TPR.G4227' => 'tpr', 'TWI18G1433' => 'twi', 'TWI31G0755' => 'twi', 'TWI38G0912' => 'twi', 'TWI75G1097' => 'twi', 'TWI75G1619' => 'twi', 'TWI79G1336' => 'twi', 'unitig_0.g943' => 'ugi', 'unitig_0.g944' => 'ugi', 'unitig_22.g6646' => 'ugi', 'unitig_37.g12681' => 'ugi', 'unitig_8.g3290' => 'ugi', 'vmacro03278' => 'vma', 'vmacro12197' => 'vma', 'vmacro14478' => 'vma', 'vmacro15787' => 'vma', 'vmacro15789' => 'vma', 'vmacro15790' => 'vma', 'vmacro15806' => 'vma', 'vmacro22907' => 'vma', 'vmacro22908' => 'vma', 'vmacro22909' => 'vma', 'vmacro23108' => 'vma', 'VMungo0540G0540' => 'vmu', 'VMungo0540G2468' => 'vmu', 'VMungo1080G0390' => 'vmu', 'VMungo1080G1165' => 'vmu', 'VMungo1127G0170' => 'vmu', 'VMungo1127G2099' => 'vmu', 'VMungo1215G3013' => 'vmu', 'Zm00001eb013110' => 'zma', 'Zm00001eb084260' => 'zma', 'Zm00001eb096110' => 'zma', 'Zm00001eb217510' => 'zma', 'Zm00001eb322550' => 'zma', 'Zm00001eb390770' => 'zma', 'Zm00001eb397170' => 'zma', 'Zm00001eb404610' => 'zma', 'Zm00001eb421790' => 'zma' ) $gf_id = 'HOM05D000911' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000911' ) $data_identifier = 'HOM05D000911' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 16, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 5, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 6, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 8, 'nnu' => (int) 16, 'oeu' => (int) 8, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 5, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 16, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421790' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000911', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27780' => 'bna', 'A03p35380' => 'bna', 'A04p21160' => 'bna', 'A05p40570' => 'bna', 'A06p26900' => 'bna', 'A08p33230' => 'bna', 'A09p65960' => 'bna', 'A10p18290' => 'bna', 'Aa31LG1G12990' => 'aar', 'Aa31LG1G2980' => 'aar', 'Aa31LG4G14320' => 'aar', 'Aa31LG7G11800' => 'aar', 'Aa31sc36G50' => 'aar', 'Aa31sc36G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3721' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5459' => 'aag', 'Actinidia03028' => 'ach', 'Actinidia03753' => 'ach', 'Actinidia04187' => 'ach', 'Actinidia05509' => 'ach', 'Actinidia24180' => 'ach', 'Actinidia26906' => 'ach', 'Actinidia37097' => 'ach', 'Actinidia38249' => 'ach', 'Ah.01g003470' => 'amhyb', 'Ah.01g004580' => 'amhyb', 'Ah.01g014850' => 'amhyb', 'Ah.01g016830' => 'amhyb', 'Ah.14g088000' => 'amhyb', 'AL1G22980' => 'aly', 'AL3G18990' => 'aly', 'AL4G22440' => 'aly', 'AL4G33180' => 'aly', 'AL5G22920' => 'aly', 'AL6G33660' => 'aly', 'AL8G20720' => 'aly', 'Aqoxy1G00935' => 'aox', 'Aqoxy1G02094' => 'aox', 'Aqoxy2G01239' => 'aox', 'Aqoxy4G01870' => 'aox', 'Aqoxy7G00450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.36ZVTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71EM27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5D6C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH3WRE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3NCM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RIM768' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YB5YRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z36GDV' => 'arhy', 'AT1G08250' => 'ath', 'AT1G11790' => 'ath', 'AT2G27820' => 'ath', 'AT3G07630' => 'ath', 'AT3G44720' => 'ath', 'AT5G22630' => 'ath', 'ATR0693G304' => 'atr', 'ATR0794G109' => 'atr', 'ATR0820G120' => 'atr', 'ATR1159G064' => 'atr', 'Atru.chr10.2239' => 'acertr', 'Atru.chr3.3371' => 'acertr', 'Atru.chr6.3202' => 'acertr', 'AUR62006499' => 'cqu', 'AUR62012718' => 'cqu', 'AUR62021938' => 'cqu', 'AUR62023932' => 'cqu', 'AUR62025034' => 'cqu', 'AUR62025035' => 'cqu', 'AUR62038307' => 'cqu', 'AUR62043466' => 'cqu', 'BcaB02g10748' => 'bca', 'BcaB03g13231' => 'bca', 'BcaB03g14689' => 'bca', 'BcaB05g22716' => 'bca', 'BcaB06g28172' => 'bca', 'BcaB08g36413' => 'bca', 'BcaC01g02186' => 'bca', 'BcaC01g04272' => 'bca', 'BcaC02g08080' => 'bca', 'BcaC02g08227' => 'bca', 'BcaC03g13901' => 'bca', 'BcaC04g19593' => 'bca', 'BcaC04g20874' => 'bca', 'BcaC05g29557' => 'bca', 'BcaC06g35505' => 'bca', 'BcaC07g41954' => 'bca', 'BcaC07g41955' => 'bca', 'BcaC07g41956' => 'bca', 'BcaC07g42519' => 'bca', 'BcaC07g42520' => 'bca', 'BcaC07g42523' => 'bca', 'BcaC07g42524' => 'bca', 'BcaC07g42525' => 'bca', 'BcaC08g47480' => 'bca', 'BcaC08g47481' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00530' => 'bna', 'BolC2t07178H' => 'bol', 'BolC3t16567H' => 'bol', 'BolC4t27234H' => 'bol', 'BolC5t29728H' => 'bol', 'BolC5t34622H' => 'bol', 'BolC6t40321H' => 'bol', 'BolC7t42028H' => 'bol', 'BolC8t49125H' => 'bol', 'BolC8t52538H' => 'bol', 'BolC8t52539H' => 'bol', 'BolC9t56681H' => 'bol', 'BolC9t58266H' => 'bol', 'BolSC21t60294H' => 'bol', 'BraA02t05670Z' => 'bra', 'BraA03t12716Z' => 'bra', 'BraA04t17685Z' => 'bra', 'BraA05t22788Z' => 'bra', 'BraA06t24032Z' => 'bra', 'BraA06t25625Z' => 'bra', 'BraA07t27930Z' => 'bra', 'BraA08t35242Z' => 'bra', 'BraA09t38609Z' => 'bra', 'BraA10t43905Z' => 'bra', 'C02p11060' => 'bna', 'C03p42990' => 'bna', 'C03p67310' => 'bna', 'C04p56990' => 'bna', 'C04p58660' => 'bna', 'C05p09890' => 'bna', 'C05p59680' => 'bna', 'C06p19830' => 'bna', 'C06p53040' => 'bna', 'C07p15230' => 'bna', 'C08p50070' => 'bna', 'C08p50090' => 'bna', 'C09p38330' => 'bna', 'C09p53940' => 'bna', 'CAN.G1014.1' => 'can', 'CAN.G644.30' => 'can', 'CAN.G84.47' => 'can', 'CAN.G919.8' => 'can', 'CANSAT54G0113' => 'cansat', 'CANSAT54G1286' => 'cansat', 'CANSAT64G1020' => 'cansat', 'CARHR008080' => 'chi', 'CARHR008090' => 'chi', 'CARHR012130' => 'chi', 'CARHR038390' => 'chi', 'CARHR082330' => 'chi', 'CARHR120520' => 'chi', 'CARHR151470' => 'chi', 'CARHR190950' => 'chi', 'Carub.0001s0760' => 'cru', 'Carub.0001s1146' => 'cru', 'Carub.0003s0721' => 'cru', 'Carub.0004s0858' => 'cru', 'Carub.0005s1040' => 'cru', 'Carub.0006s2035' => 'cru', 'Carub.0015s0005' => 'cru', 'Ca_01607_v3' => 'car', 'Ca_01677_v3' => 'car', 'Ca_06087_v3' => 'car', 'Ca_19238_v3' => 'car', 'Ca_19373_v3' => 'car', 'Ca_21079_v3' => 'car', 'CBR_g54016' => 'cbr', 'CBR_g54018' => 'cbr', 'CBR_g54020' => 'cbr', 'Cc01_g09780' => 'ccan', 'Cc01_g11680' => 'ccan', 'Cc02_g15610' => 'ccan', 'Cc05_g04350' => 'ccan', 'Cc09_g01580' => 'ccan', 'CDE01G0795' => 'cde', 'CDE02G2024' => 'cde', 'CDE02G2260' => 'cde', 'CDE02G4561' => 'cde', 'CDE05G2733' => 'cde', 'CDE05G3422' => 'cde', 'CDE06G2003' => 'cde', 'CDE08G0576' => 'cde', 'CDE09G0048' => 'cde', 'CDE11G0805' => 'cde', 'Cfa003644' => 'cfa', 'Cfa006290' => 'cfa', 'Cfa010080' => 'cfa', 'Cfa011376' => 'cfa', 'Cfa011576' => 'cfa', 'Cfa011577' => 'cfa', 'Cfa014389' => 'cfa', 'Ciclev10006044m.g' => 'ccl', 'Ciclev10006954m.g' => 'ccl', 'Ciclev10015131m.g' => 'ccl', 'Ciclev10015580m.g' => 'ccl', 'Ciclev10028359m.g' => 'ccl', 'Ciclev10028573m.g' => 'ccl', 'CiPaw.03G159300' => 'cil', 'CiPaw.04G115100' => 'cil', 'CiPaw.09G092800' => 'cil', 'CiPaw.10G071800' => 'cil', 'CiPaw.13G105800' => 'cil', 'CiPaw.13G141000' => 'cil', 'CiPaw.14G103400' => 'cil', 'ClCG01G012700' => 'cla', 'ClCG01G012720' => 'cla', 'ClCG01G021920' => 'cla', 'ClCG02G008870' => 'cla', 'ClCG02G020840' => 'cla', 'ClCG02G021930' => 'cla', 'COL.COLO4_19302' => 'col', 'COL.COLO4_25262' => 'col', 'COL.COLO4_31788' => 'col', 'Cpa.g.c34684' => 'cpa', 'Cpa.g.c36520.1' => 'cpa', 'Cpa.g.c45626' => 'cpa', 'Cpa.g.sc121.17' => 'cpa', 'Cpa.g.sc13.22' => 'cpa', 'Cpa.g.sc87.88' => 'cpa', 'Cre06.g261800' => 'cre', 'CsaV3_1G014500' => 'csa', 'CsaV3_1G014510' => 'csa', 'CsaV3_2G034880' => 'csa', 'CsaV3_6G014760' => 'csa', 'CsaV3_6G021500' => 'csa', 'CsaV3_6G048980' => 'csa', 'CSS0002511' => 'camsi', 'CSS0007556' => 'camsi', 'CSS0008532' => 'camsi', 'CSS0009709' => 'camsi', 'CSS0010486' => 'camsi', 'CSS0016768' => 'camsi', 'CSS0023512' => 'camsi', 'CSS0025341' => 'camsi', 'CSS0027999' => 'camsi', 'CSS0028944' => 'camsi', 'CSS0032292' => 'camsi', 'CSS0032464' => 'camsi', 'CSS0037153' => 'camsi', 'CSS0039256' => 'camsi', 'CSS0048392' => 'camsi', 'CSS0050458' => 'camsi', 'DCAR_004224' => 'dca', 'DCAR_006147' => 'dca', 'DCAR_006465' => 'dca', 'DCAR_008159' => 'dca', 'DCAR_012164' => 'dca', 'DCAR_019764' => 'dca', 'Dinv05418' => 'din', 'Dinv10839' => 'din', 'Dinv12521' => 'din', 'Dinv13900' => 'din', 'Dinv29426' => 'din', 'Duzib150G0263' => 'dzi', 'Duzib168G1178' => 'dzi', 'Duzib168G1924' => 'dzi', 'Duzib170G0299' => 'dzi', 'Duzib170G0813' => 'dzi', 'Duzib235G1128' => 'dzi', 'Duzib248G1060' => 'dzi', 'ECA232G1910' => 'eca', 'ECA233G4621' => 'eca', 'ECA238G1216' => 'eca', 'ECA238G1784' => 'eca', 'ECA248G1242' => 'eca', 'EL10Ac8g20071' => 'bvu', 'EL10Ac9g21086' => 'bvu', 'EL10Ac9g22407' => 'bvu', 'EL10Ac9g22412' => 'bvu', 'Eucgr.A01119' => 'egr', 'Eucgr.E04043' => 'egr', 'Eucgr.J00428' => 'egr', 'Eucgr.J00958' => 'egr', 'FAN11G3091' => 'fan', 'FAN11G3651' => 'fan', 'FAN16G2566' => 'fan', 'FAN21G3155' => 'fan', 'FAN21G3400' => 'fan', 'FAN21G3543' => 'fan', 'FAN25G0234' => 'fan', 'FAN25G1422' => 'fan', 'FAN25G3392' => 'fan', 'FvH4_3g01940' => 'fve', 'FvH4_3g29870' => 'fve', 'FvH4_3g33680' => 'fve', 'Glyma.09G004200' => 'gma', 'Glyma.11G151288' => 'gma', 'Glyma.11G189100' => 'gma', 'Glyma.12G072500' => 'gma', 'Glyma.12G085500' => 'gma', 'Glyma.12G181800' => 'gma', 'Glyma.12G193000' => 'gma', 'Glyma.13G309300' => 'gma', 'Glyma.13G319000' => 'gma', 'Glyma.17G012600' => 'gma', 'Gohir.A06G148600' => 'ghi', 'Gohir.A07G115800' => 'ghi', 'Gohir.A08G003600' => 'ghi', 'Gohir.A09G093300' => 'ghi', 'Gohir.A09G105400' => 'ghi', 'Gohir.A09G105500' => 'ghi', 'Gohir.D06G154600' => 'ghi', 'Gohir.D07G120200' => 'ghi', 'Gohir.D08G013900' => 'ghi', 'Gohir.D09G093100' => 'ghi', 'Gohir.D09G102200' => 'ghi', 'Gohir.D09G102300' => 'ghi', 'Gorai.001G129400' => 'gra', 'Gorai.004G008200' => 'gra', 'Gorai.006G109800' => 'gra', 'Gorai.006G119500' => 'gra', 'Gorai.006G121300' => 'gra', 'Gorai.010G180700' => 'gra', 'GSVIVG01012716001' => 'vvi', 'GSVIVG01025118001' => 'vvi', 'GSVIVG01030439001' => 'vvi', 'GSVIVG01031397001' => 'vvi', 'HanXRQChr01g0004201' => 'han', 'HanXRQChr02g0054941' => 'han', 'HanXRQChr05g0141811' => 'han', 'HanXRQChr07g0197751' => 'han', 'HanXRQChr11g0346691' => 'han', 'HanXRQChr13g0396971' => 'han', 'HanXRQChr14g0432951' => 'han', 'HanXRQChr14g0452001' => 'han', 'HanXRQChr15g0496681' => 'han', 'HanXRQChr17g0557491' => 'han', 'HanXRQChr17g0557501' => 'han', 'Haze_06809' => 'cav', 'Haze_12852' => 'cav', 'Haze_15850' => 'cav', 'Haze_23446' => 'cav', 'Haze_23942' => 'cav', 'Haze_23943' => 'cav', 'Hma1.2p1_0091F.1_g046450' => 'hma', 'Hma1.2p1_0128F.1_g059910' => 'hma', 'Hma1.2p1_0249F.1_g102260' => 'hma', 'Hma1.2p1_0453F.1_g156190' => 'hma', 'Hma1.2p1_0695F.1_g204380' => 'hma', 'Hma1.2p1_0749F.1_g212650' => 'hma', 'Hma1.2p1_2156F.1_g315420' => 'hma', 'Hma1.2p1_2686F.1_g326940' => 'hma', 'HPP92_006428' => 'vpl', 'HPP92_012069' => 'vpl', 'HPP92_014129' => 'vpl', 'HPP92_014133' => 'vpl', 'HPP92_017315' => 'vpl', 'HPP92_026445' => 'vpl', 'HPP92_026446' => 'vpl', 'Hund00774' => 'sun', 'Hund07682' => 'sun', 'Hund21413' => 'sun', 'Hund23462' => 'sun', 'Hund23463' => 'sun', 'Lalb_Chr03g0027911' => 'lal', 'Lalb_Chr13g0304271' => 'lal', 'Lalb_Chr19g0137471' => 'lal', 'Lalb_Chr22g0350651' => 'lal', 'Lalb_Chr24g0395151' => 'lal', 'Lj1A1231T40' => 'lonja', 'Lj1A221T48' => 'lonja', 'Lj1C924T12' => 'lonja', 'Lj2C993G6' => 'lonja', 'Lj3g0005790' => 'lja', 'Lj3g0015432' => 'lja', 'Lj3g0017722' => 'lja', 'Lj3g0018497' => 'lja', 'Lj4g0025071' => 'lja', 'Lsat_1_v5_gn_1_129680' => 'lsa', 'Lsat_1_v5_gn_2_25321' => 'lsa', 'Lsat_1_v5_gn_2_95461' => 'lsa', 'Lsat_1_v5_gn_4_159620' => 'lsa', 'Lsat_1_v5_gn_6_41301' => 'lsa', 'Lsat_1_v5_gn_6_74660' => 'lsa', 'Lsat_1_v5_gn_7_11520' => 'lsa', 'Lsat_1_v5_gn_9_67680' => 'lsa', 'Manes.04G008300' => 'mes', 'Manes.04G008400' => 'mes', 'Manes.04G026500' => 'mes', 'Manes.10G135300' => 'mes', 'Manes.11G157300' => 'mes', 'Manes.12G074000' => 'mes', 'Manes.16G006200' => 'mes', 'Manes.17G026400' => 'mes', 'Mapoly0024s0086' => 'mpo', 'Mapoly0024s0087' => 'mpo', 'Mapoly0071s0057' => 'mpo', 'Mapoly0204s0012' => 'mpo', 'MBI04_g37681_MAGBIO' => 'mbi', 'MBI05_g17779_MAGBIO' => 'mbi', 'MBI12_g31184_MAGBIO' => 'mbi', 'MBI17_g11083_MAGBIO' => 'mbi', 'MBI18_g03883_MAGBIO' => 'mbi', 'MBI18_g28940_MAGBIO' => 'mbi', 'MCO01G690' => 'mco', 'MD03G1109900' => 'mdo', 'MD03G1134800' => 'mdo', 'MD05G1348000' => 'mdo', 'MD10G1322400' => 'mdo', 'MD11G1123300' => 'mdo', 'MD11G1157600' => 'mdo', 'Medtr2g084875' => 'mtr', 'Medtr2g088130' => 'mtr', 'Medtr4g055310' => 'mtr', 'Medtr4g061070' => 'mtr', 'Medtr4g132250' => 'mtr', 'MELO3C004795.2' => 'cme', 'MELO3C004797.2' => 'cme', 'MELO3C007396.2' => 'cme', 'MELO3C019277.2' => 'cme', 'MELO3C021449.2' => 'cme', 'MELO3C025736.2' => 'cme', 'Migut.D02175' => 'egut', 'Migut.H01573' => 'egut', 'Migut.M01327' => 'egut', 'Migut.N02513' => 'egut', 'MSTRG.14638' => 'ama', 'MSTRG.18632' => 'ama', 'MSTRG.7203' => 'ama', 'Nitab4.5_0000533g0140' => 'nta', 'Nitab4.5_0000888g0150' => 'nta', 'Nitab4.5_0001453g0040' => 'nta', 'Nitab4.5_0002827g0090' => 'nta', 'Nitab4.5_0003082g0040' => 'nta', 'Nitab4.5_0007799g0040' => 'nta', 'Nitab4.5_0008983g0010' => 'nta', 'Nitab4.5_0009017g0020' => 'nta', 'Nn1g02132' => 'nnu', 'Nn1g03492' => 'nnu', 'Nn1g03493' => 'nnu', 'Nn1g03494' => 'nnu', 'Nn1g07164' => 'nnu', 'Nn1g07291' => 'nnu', 'Nn2g10655' => 'nnu', 'Nn2g11652' => 'nnu', 'Nn2g14008' => 'nnu', 'Nn3g17476' => 'nnu', 'Nn3g17477' => 'nnu', 'Nn4g22370' => 'nnu', 'Nn4g25255' => 'nnu', 'Nn5g27755' => 'nnu', 'Nn6g34260' => 'nnu', 'Nn6g35041' => 'nnu', 'Oeu005924.1' => 'oeu', 'Oeu008383.1' => 'oeu', 'Oeu014928.1' => 'oeu', 'Oeu019889.1' => 'oeu', 'Oeu022271.1' => 'oeu', 'Oeu025271.1' => 'oeu', 'Oeu036302.1' => 'oeu', 'Oeu044100.1' => 'oeu', 'Os01g0528300' => 'osa', 'Os03g0286200' => 'osa', 'Os04g0406600' => 'osa', 'Os07g0512000' => 'osa', 'Os07g0694600' => 'osa', 'Os08g0411000' => 'osa', 'Os09g0565700' => 'osa', 'Os09g0566050' => 'osa', 'Os10g0523700' => 'osa', 'Peaxi162Scf00002g00514' => 'pax', 'Peaxi162Scf00047g01817' => 'pax', 'Peaxi162Scf00114g00001' => 'pax', 'Peaxi162Scf00147g00613' => 'pax', 'Peaxi162Scf00389g00425' => 'pax', 'PGR042G1139' => 'pgr', 'PGR042G3273' => 'pgr', 'PGR102G2180' => 'pgr', 'PGR119G0234' => 'pgr', 'PGR119G0668' => 'pgr', 'PGSC0003DMG400007122' => 'stu', 'PGSC0003DMG400016478' => 'stu', 'PGSC0003DMG400025374' => 'stu', 'PGSC0003DMG400026536' => 'stu', 'Phvul.003G079600' => 'pvu', 'Phvul.005G115600' => 'pvu', 'Phvul.005G127100' => 'pvu', 'Phvul.006G149500' => 'pvu', 'Phvul.006G149600' => 'pvu', 'Phvul.011G071800' => 'pvu', 'Phvul.011G090400' => 'pvu', 'Potri.004G013400' => 'ptr', 'Potri.004G188100' => 'ptr', 'Potri.008G195500' => 'ptr', 'Potri.009G148800' => 'ptr', 'Potri.011G004700' => 'ptr', 'Pp3c17_22810' => 'ppa', 'Pp3c18_4480' => 'ppa', 'Pp3c19_13030' => 'ppa', 'Pp3c1_33620' => 'ppa', 'Pp3c2_9380' => 'ppa', 'PRCOL_00001023' => 'pco', 'Prupe.3G216300' => 'ppe', 'Prupe.4G019500' => 'ppe', 'Prupe.6G092500' => 'ppe', 'Prupe.6G119200' => 'ppe', 'Psat0s1945g0080' => 'psa', 'Psat0s4167g0040' => 'psa', 'Psat1g185800' => 'psa', 'Psat4g006440' => 'psa', 'Psat4g006480' => 'psa', 'Psat4g168120' => 'psa', 'Psat5g255680' => 'psa', 'Psat5g261760' => 'psa', 'Psat7g222120' => 'psa', 'PSO063G7252' => 'pso', 'PSO170G4778' => 'pso', 'PSO210G2249' => 'pso', 'PSO339G2411' => 'pso', 'PSO339G2457' => 'pso', 'PSO339G2854' => 'pso', 'PSO339G4288' => 'pso', 'PSO339G4615' => 'pso', 'PSO384G2796' => 'pso', 'PSO384G2940' => 'pso', 'PSO384G4227' => 'pso', 'PSO478G1425' => 'pso', 'PSO541G3863' => 'pso', 'PSO675G0507' => 'pso', 'PSO782G0338' => 'pso', 'PSO832G0644' => 'pso', 'QL01p013664' => 'qlo', 'QL01p036598' => 'qlo', 'QL05p072984' => 'qlo', 'QL08p005768' => 'qlo', 'QL08p032743' => 'qlo', 'QL93p0073_0439' => 'qlo', 'QL93p0073_0444' => 'qlo', 'RcHm_v2.0_Chr5g0002851' => 'rch', 'RcHm_v2.0_Chr5g0055201' => 'rch', 'RcHm_v2.0_Chr5g0061191' => 'rch', 'RcHm_v2.0_Chr7g0203231' => 'rch', 'Rhsim01G0208100' => 'rsi', 'Rhsim01G0208200' => 'rsi', 'Rhsim02G0106500' => 'rsi', 'Rhsim03G0107900' => 'rsi', 'Rhsim06G0163400' => 'rsi', 'Rhsim13G0105200' => 'rsi', 'Sabra04G0006300' => 'sbr', 'Sabra04G0127000' => 'sbr', 'Sabra08G0148700' => 'sbr', 'Sabra09G0117400' => 'sbr', 'SalBow1G3326' => 'sbo', 'SalBow3G3228' => 'sbo', 'SalBow6G1634' => 'sbo', 'SalBow6G3603' => 'sbo', 'SalBow6G5266' => 'sbo', 'SalBow7G2265' => 'sbo', 'SalBow8G0850' => 'sbo', 'SalBow8G2592' => 'sbo', 'Sc05g0009240' => 'sci', 'Sc12g0002300' => 'sci', 'Sc21g0000100' => 'sci', 'Sc21g0004720' => 'sci', 'Sed0002949' => 'sed', 'Sed0004114' => 'sed', 'Sed0004306' => 'sed', 'Sed0006172' => 'sed', 'Sed0008413' => 'sed', 'Sed0013809' => 'sed', 'Sed0019556' => 'sed', 'SEGI_03570' => 'sgi', 'SEGI_07859' => 'sgi', 'SEGI_15042' => 'sgi', 'SEGI_16263' => 'sgi', 'SEGI_16552' => 'sgi', 'SEGI_24331' => 'sgi', 'SEGI_27316' => 'sgi', 'SEGI_29521' => 'sgi', 'SEGI_41342' => 'sgi', 'SGA_v2.0_scaffold27G11617' => 'sas', 'SGA_v2.0_scaffold316G48428' => 'sas', 'SGA_v2.0_scaffold49G18261' => 'sas', 'SGA_v2.0_scaffold7G03831' => 'sas', 'SGA_v2.0_scaffold93G28359' => 'sas', 'SHI02210' => 'shi', 'SHI06028' => 'shi', 'SHI06321' => 'shi', 'SMO111G0012' => 'smo', 'SMO228G0080' => 'smo', 'SMO356G0756' => 'smo', 'Solyc02g080620.3' => 'sly', 'Solyc06g074530.1' => 'sly', 'Solyc11g066890.1' => 'sly', 'Solyc11g072520.3' => 'sly', 'Sopen02g025330' => 'spe', 'Sopen06g031000' => 'spe', 'Sopen09g008240' => 'spe', 'Sopen09g025210' => 'spe', 'Sopen11g026600' => 'spe', 'Sopen11g030170' => 'spe', 'Sp1g10420' => 'spa', 'Sp3g06570' => 'spa', 'Sp4g10660' => 'spa', 'Sp5g16460' => 'spa', 'Sp6g22710' => 'spa', 'TAR365G0112' => 'tar', 'TAR369G0717' => 'tar', 'TAR374G0976' => 'tar', 'TAR623G1128' => 'tar', 'TAR626G1937' => 'tar', 'TAR627G0123' => 'tar', 'TAR628G0305' => 'tar', 'TAR636G1176' => 'tar', 'TAR636G2442' => 'tar', 'THA.LOC104800556' => 'tha', 'THA.LOC104809501' => 'tha', 'THA.LOC104815126' => 'tha', 'THA.LOC104815732' => 'tha', 'THA.LOC104823528' => 'tha', 'Thecc.02G365600' => 'tca', 'Thecc.06G222300' => 'tca', 'Thecc.09G261800' => 'tca', 'Thecc.09G291400' => 'tca', 'Thhalv10003028m.g' => 'esa', 'Thhalv10007886m.g' => 'esa', 'Thhalv10016085m.g' => 'esa', 'Thhalv10016681m.g' => 'esa', 'Thhalv10020951m.g' => 'esa', 'TPR.G15598' => 'tpr', 'TPR.G29305' => 'tpr', 'TPR.G32395' => 'tpr', 'TPR.G36998' => 'tpr', 'TPR.G4227' => 'tpr', 'TWI18G1433' => 'twi', 'TWI31G0755' => 'twi', 'TWI38G0912' => 'twi', 'TWI75G1097' => 'twi', 'TWI75G1619' => 'twi', 'TWI79G1336' => 'twi', 'unitig_0.g943' => 'ugi', 'unitig_0.g944' => 'ugi', 'unitig_22.g6646' => 'ugi', 'unitig_37.g12681' => 'ugi', 'unitig_8.g3290' => 'ugi', 'vmacro03278' => 'vma', 'vmacro12197' => 'vma', 'vmacro14478' => 'vma', 'vmacro15787' => 'vma', 'vmacro15789' => 'vma', 'vmacro15790' => 'vma', 'vmacro15806' => 'vma', 'vmacro22907' => 'vma', 'vmacro22908' => 'vma', 'vmacro22909' => 'vma', 'vmacro23108' => 'vma', 'VMungo0540G0540' => 'vmu', 'VMungo0540G2468' => 'vmu', 'VMungo1080G0390' => 'vmu', 'VMungo1080G1165' => 'vmu', 'VMungo1127G0170' => 'vmu', 'VMungo1127G2099' => 'vmu', 'VMungo1215G3013' => 'vmu', 'Zm00001eb013110' => 'zma', 'Zm00001eb084260' => 'zma', 'Zm00001eb096110' => 'zma', 'Zm00001eb217510' => 'zma', 'Zm00001eb322550' => 'zma', 'Zm00001eb390770' => 'zma', 'Zm00001eb397170' => 'zma', 'Zm00001eb404610' => 'zma', 'Zm00001eb421790' => 'zma' ), 'gf_id' => 'HOM05D000911', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000911' ), 'data_identifier' => 'HOM05D000911', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000911', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27780' => 'bna', 'A03p35380' => 'bna', 'A04p21160' => 'bna', 'A05p40570' => 'bna', 'A06p26900' => 'bna', 'A08p33230' => 'bna', 'A09p65960' => 'bna', 'A10p18290' => 'bna', 'Aa31LG1G12990' => 'aar', 'Aa31LG1G2980' => 'aar', 'Aa31LG4G14320' => 'aar', 'Aa31LG7G11800' => 'aar', 'Aa31sc36G50' => 'aar', 'Aa31sc36G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3721' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5459' => 'aag', 'Actinidia03028' => 'ach', 'Actinidia03753' => 'ach', 'Actinidia04187' => 'ach', 'Actinidia05509' => 'ach', 'Actinidia24180' => 'ach', 'Actinidia26906' => 'ach', 'Actinidia37097' => 'ach', 'Actinidia38249' => 'ach', 'Ah.01g003470' => 'amhyb', 'Ah.01g004580' => 'amhyb', 'Ah.01g014850' => 'amhyb', 'Ah.01g016830' => 'amhyb', 'Ah.14g088000' => 'amhyb', 'AL1G22980' => 'aly', 'AL3G18990' => 'aly', 'AL4G22440' => 'aly', 'AL4G33180' => 'aly', 'AL5G22920' => 'aly', 'AL6G33660' => 'aly', 'AL8G20720' => 'aly', 'Aqoxy1G00935' => 'aox', 'Aqoxy1G02094' => 'aox', 'Aqoxy2G01239' => 'aox', 'Aqoxy4G01870' => 'aox', 'Aqoxy7G00450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.36ZVTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71EM27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5D6C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH3WRE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3NCM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RIM768' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YB5YRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z36GDV' => 'arhy', 'AT1G08250' => 'ath', 'AT1G11790' => 'ath', 'AT2G27820' => 'ath', 'AT3G07630' => 'ath', 'AT3G44720' => 'ath', 'AT5G22630' => 'ath', 'ATR0693G304' => 'atr', 'ATR0794G109' => 'atr', 'ATR0820G120' => 'atr', 'ATR1159G064' => 'atr', 'Atru.chr10.2239' => 'acertr', 'Atru.chr3.3371' => 'acertr', 'Atru.chr6.3202' => 'acertr', 'AUR62006499' => 'cqu', 'AUR62012718' => 'cqu', 'AUR62021938' => 'cqu', 'AUR62023932' => 'cqu', 'AUR62025034' => 'cqu', 'AUR62025035' => 'cqu', 'AUR62038307' => 'cqu', 'AUR62043466' => 'cqu', 'BcaB02g10748' => 'bca', 'BcaB03g13231' => 'bca', 'BcaB03g14689' => 'bca', 'BcaB05g22716' => 'bca', 'BcaB06g28172' => 'bca', 'BcaB08g36413' => 'bca', 'BcaC01g02186' => 'bca', 'BcaC01g04272' => 'bca', 'BcaC02g08080' => 'bca', 'BcaC02g08227' => 'bca', 'BcaC03g13901' => 'bca', 'BcaC04g19593' => 'bca', 'BcaC04g20874' => 'bca', 'BcaC05g29557' => 'bca', 'BcaC06g35505' => 'bca', 'BcaC07g41954' => 'bca', 'BcaC07g41955' => 'bca', 'BcaC07g41956' => 'bca', 'BcaC07g42519' => 'bca', 'BcaC07g42520' => 'bca', 'BcaC07g42523' => 'bca', 'BcaC07g42524' => 'bca', 'BcaC07g42525' => 'bca', 'BcaC08g47480' => 'bca', 'BcaC08g47481' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00530' => 'bna', 'BolC2t07178H' => 'bol', 'BolC3t16567H' => 'bol', 'BolC4t27234H' => 'bol', 'BolC5t29728H' => 'bol', 'BolC5t34622H' => 'bol', 'BolC6t40321H' => 'bol', 'BolC7t42028H' => 'bol', 'BolC8t49125H' => 'bol', 'BolC8t52538H' => 'bol', 'BolC8t52539H' => 'bol', 'BolC9t56681H' => 'bol', 'BolC9t58266H' => 'bol', 'BolSC21t60294H' => 'bol', 'BraA02t05670Z' => 'bra', 'BraA03t12716Z' => 'bra', 'BraA04t17685Z' => 'bra', 'BraA05t22788Z' => 'bra', 'BraA06t24032Z' => 'bra', 'BraA06t25625Z' => 'bra', 'BraA07t27930Z' => 'bra', 'BraA08t35242Z' => 'bra', 'BraA09t38609Z' => 'bra', 'BraA10t43905Z' => 'bra', 'C02p11060' => 'bna', 'C03p42990' => 'bna', 'C03p67310' => 'bna', 'C04p56990' => 'bna', 'C04p58660' => 'bna', 'C05p09890' => 'bna', 'C05p59680' => 'bna', 'C06p19830' => 'bna', 'C06p53040' => 'bna', 'C07p15230' => 'bna', 'C08p50070' => 'bna', 'C08p50090' => 'bna', 'C09p38330' => 'bna', 'C09p53940' => 'bna', 'CAN.G1014.1' => 'can', 'CAN.G644.30' => 'can', 'CAN.G84.47' => 'can', 'CAN.G919.8' => 'can', 'CANSAT54G0113' => 'cansat', 'CANSAT54G1286' => 'cansat', 'CANSAT64G1020' => 'cansat', 'CARHR008080' => 'chi', 'CARHR008090' => 'chi', 'CARHR012130' => 'chi', 'CARHR038390' => 'chi', 'CARHR082330' => 'chi', 'CARHR120520' => 'chi', 'CARHR151470' => 'chi', 'CARHR190950' => 'chi', 'Carub.0001s0760' => 'cru', 'Carub.0001s1146' => 'cru', 'Carub.0003s0721' => 'cru', 'Carub.0004s0858' => 'cru', 'Carub.0005s1040' => 'cru', 'Carub.0006s2035' => 'cru', 'Carub.0015s0005' => 'cru', 'Ca_01607_v3' => 'car', 'Ca_01677_v3' => 'car', 'Ca_06087_v3' => 'car', 'Ca_19238_v3' => 'car', 'Ca_19373_v3' => 'car', 'Ca_21079_v3' => 'car', 'CBR_g54016' => 'cbr', 'CBR_g54018' => 'cbr', 'CBR_g54020' => 'cbr', 'Cc01_g09780' => 'ccan', 'Cc01_g11680' => 'ccan', 'Cc02_g15610' => 'ccan', 'Cc05_g04350' => 'ccan', 'Cc09_g01580' => 'ccan', 'CDE01G0795' => 'cde', 'CDE02G2024' => 'cde', 'CDE02G2260' => 'cde', 'CDE02G4561' => 'cde', 'CDE05G2733' => 'cde', 'CDE05G3422' => 'cde', 'CDE06G2003' => 'cde', 'CDE08G0576' => 'cde', 'CDE09G0048' => 'cde', 'CDE11G0805' => 'cde', 'Cfa003644' => 'cfa', 'Cfa006290' => 'cfa', 'Cfa010080' => 'cfa', 'Cfa011376' => 'cfa', 'Cfa011576' => 'cfa', 'Cfa011577' => 'cfa', 'Cfa014389' => 'cfa', 'Ciclev10006044m.g' => 'ccl', 'Ciclev10006954m.g' => 'ccl', 'Ciclev10015131m.g' => 'ccl', 'Ciclev10015580m.g' => 'ccl', 'Ciclev10028359m.g' => 'ccl', 'Ciclev10028573m.g' => 'ccl', 'CiPaw.03G159300' => 'cil', 'CiPaw.04G115100' => 'cil', 'CiPaw.09G092800' => 'cil', 'CiPaw.10G071800' => 'cil', 'CiPaw.13G105800' => 'cil', 'CiPaw.13G141000' => 'cil', 'CiPaw.14G103400' => 'cil', 'ClCG01G012700' => 'cla', 'ClCG01G012720' => 'cla', 'ClCG01G021920' => 'cla', 'ClCG02G008870' => 'cla', 'ClCG02G020840' => 'cla', 'ClCG02G021930' => 'cla', 'COL.COLO4_19302' => 'col', 'COL.COLO4_25262' => 'col', 'COL.COLO4_31788' => 'col', 'Cpa.g.c34684' => 'cpa', 'Cpa.g.c36520.1' => 'cpa', 'Cpa.g.c45626' => 'cpa', 'Cpa.g.sc121.17' => 'cpa', 'Cpa.g.sc13.22' => 'cpa', 'Cpa.g.sc87.88' => 'cpa', 'Cre06.g261800' => 'cre', 'CsaV3_1G014500' => 'csa', 'CsaV3_1G014510' => 'csa', 'CsaV3_2G034880' => 'csa', 'CsaV3_6G014760' => 'csa', 'CsaV3_6G021500' => 'csa', 'CsaV3_6G048980' => 'csa', 'CSS0002511' => 'camsi', 'CSS0007556' => 'camsi', 'CSS0008532' => 'camsi', 'CSS0009709' => 'camsi', 'CSS0010486' => 'camsi', 'CSS0016768' => 'camsi', 'CSS0023512' => 'camsi', 'CSS0025341' => 'camsi', 'CSS0027999' => 'camsi', 'CSS0028944' => 'camsi', 'CSS0032292' => 'camsi', 'CSS0032464' => 'camsi', 'CSS0037153' => 'camsi', 'CSS0039256' => 'camsi', 'CSS0048392' => 'camsi', 'CSS0050458' => 'camsi', 'DCAR_004224' => 'dca', 'DCAR_006147' => 'dca', 'DCAR_006465' => 'dca', 'DCAR_008159' => 'dca', 'DCAR_012164' => 'dca', 'DCAR_019764' => 'dca', 'Dinv05418' => 'din', 'Dinv10839' => 'din', 'Dinv12521' => 'din', 'Dinv13900' => 'din', 'Dinv29426' => 'din', 'Duzib150G0263' => 'dzi', 'Duzib168G1178' => 'dzi', 'Duzib168G1924' => 'dzi', 'Duzib170G0299' => 'dzi', 'Duzib170G0813' => 'dzi', 'Duzib235G1128' => 'dzi', 'Duzib248G1060' => 'dzi', 'ECA232G1910' => 'eca', 'ECA233G4621' => 'eca', 'ECA238G1216' => 'eca', 'ECA238G1784' => 'eca', 'ECA248G1242' => 'eca', 'EL10Ac8g20071' => 'bvu', 'EL10Ac9g21086' => 'bvu', 'EL10Ac9g22407' => 'bvu', 'EL10Ac9g22412' => 'bvu', 'Eucgr.A01119' => 'egr', 'Eucgr.E04043' => 'egr', 'Eucgr.J00428' => 'egr', 'Eucgr.J00958' => 'egr', 'FAN11G3091' => 'fan', 'FAN11G3651' => 'fan', 'FAN16G2566' => 'fan', 'FAN21G3155' => 'fan', 'FAN21G3400' => 'fan', 'FAN21G3543' => 'fan', 'FAN25G0234' => 'fan', 'FAN25G1422' => 'fan', 'FAN25G3392' => 'fan', 'FvH4_3g01940' => 'fve', 'FvH4_3g29870' => 'fve', 'FvH4_3g33680' => 'fve', 'Glyma.09G004200' => 'gma', 'Glyma.11G151288' => 'gma', 'Glyma.11G189100' => 'gma', 'Glyma.12G072500' => 'gma', 'Glyma.12G085500' => 'gma', 'Glyma.12G181800' => 'gma', 'Glyma.12G193000' => 'gma', 'Glyma.13G309300' => 'gma', 'Glyma.13G319000' => 'gma', 'Glyma.17G012600' => 'gma', 'Gohir.A06G148600' => 'ghi', 'Gohir.A07G115800' => 'ghi', 'Gohir.A08G003600' => 'ghi', 'Gohir.A09G093300' => 'ghi', 'Gohir.A09G105400' => 'ghi', 'Gohir.A09G105500' => 'ghi', 'Gohir.D06G154600' => 'ghi', 'Gohir.D07G120200' => 'ghi', 'Gohir.D08G013900' => 'ghi', 'Gohir.D09G093100' => 'ghi', 'Gohir.D09G102200' => 'ghi', 'Gohir.D09G102300' => 'ghi', 'Gorai.001G129400' => 'gra', 'Gorai.004G008200' => 'gra', 'Gorai.006G109800' => 'gra', 'Gorai.006G119500' => 'gra', 'Gorai.006G121300' => 'gra', 'Gorai.010G180700' => 'gra', 'GSVIVG01012716001' => 'vvi', 'GSVIVG01025118001' => 'vvi', 'GSVIVG01030439001' => 'vvi', 'GSVIVG01031397001' => 'vvi', 'HanXRQChr01g0004201' => 'han', 'HanXRQChr02g0054941' => 'han', 'HanXRQChr05g0141811' => 'han', 'HanXRQChr07g0197751' => 'han', 'HanXRQChr11g0346691' => 'han', 'HanXRQChr13g0396971' => 'han', 'HanXRQChr14g0432951' => 'han', 'HanXRQChr14g0452001' => 'han', 'HanXRQChr15g0496681' => 'han', 'HanXRQChr17g0557491' => 'han', 'HanXRQChr17g0557501' => 'han', 'Haze_06809' => 'cav', 'Haze_12852' => 'cav', 'Haze_15850' => 'cav', 'Haze_23446' => 'cav', 'Haze_23942' => 'cav', 'Haze_23943' => 'cav', 'Hma1.2p1_0091F.1_g046450' => 'hma', 'Hma1.2p1_0128F.1_g059910' => 'hma', 'Hma1.2p1_0249F.1_g102260' => 'hma', 'Hma1.2p1_0453F.1_g156190' => 'hma', 'Hma1.2p1_0695F.1_g204380' => 'hma', 'Hma1.2p1_0749F.1_g212650' => 'hma', 'Hma1.2p1_2156F.1_g315420' => 'hma', 'Hma1.2p1_2686F.1_g326940' => 'hma', 'HPP92_006428' => 'vpl', 'HPP92_012069' => 'vpl', 'HPP92_014129' => 'vpl', 'HPP92_014133' => 'vpl', 'HPP92_017315' => 'vpl', 'HPP92_026445' => 'vpl', 'HPP92_026446' => 'vpl', 'Hund00774' => 'sun', 'Hund07682' => 'sun', 'Hund21413' => 'sun', 'Hund23462' => 'sun', 'Hund23463' => 'sun', 'Lalb_Chr03g0027911' => 'lal', 'Lalb_Chr13g0304271' => 'lal', 'Lalb_Chr19g0137471' => 'lal', 'Lalb_Chr22g0350651' => 'lal', 'Lalb_Chr24g0395151' => 'lal', 'Lj1A1231T40' => 'lonja', 'Lj1A221T48' => 'lonja', 'Lj1C924T12' => 'lonja', 'Lj2C993G6' => 'lonja', 'Lj3g0005790' => 'lja', 'Lj3g0015432' => 'lja', 'Lj3g0017722' => 'lja', 'Lj3g0018497' => 'lja', 'Lj4g0025071' => 'lja', 'Lsat_1_v5_gn_1_129680' => 'lsa', 'Lsat_1_v5_gn_2_25321' => 'lsa', 'Lsat_1_v5_gn_2_95461' => 'lsa', 'Lsat_1_v5_gn_4_159620' => 'lsa', 'Lsat_1_v5_gn_6_41301' => 'lsa', 'Lsat_1_v5_gn_6_74660' => 'lsa', 'Lsat_1_v5_gn_7_11520' => 'lsa', 'Lsat_1_v5_gn_9_67680' => 'lsa', 'Manes.04G008300' => 'mes', 'Manes.04G008400' => 'mes', 'Manes.04G026500' => 'mes', 'Manes.10G135300' => 'mes', 'Manes.11G157300' => 'mes', 'Manes.12G074000' => 'mes', 'Manes.16G006200' => 'mes', 'Manes.17G026400' => 'mes', 'Mapoly0024s0086' => 'mpo', 'Mapoly0024s0087' => 'mpo', 'Mapoly0071s0057' => 'mpo', 'Mapoly0204s0012' => 'mpo', 'MBI04_g37681_MAGBIO' => 'mbi', 'MBI05_g17779_MAGBIO' => 'mbi', 'MBI12_g31184_MAGBIO' => 'mbi', 'MBI17_g11083_MAGBIO' => 'mbi', 'MBI18_g03883_MAGBIO' => 'mbi', 'MBI18_g28940_MAGBIO' => 'mbi', 'MCO01G690' => 'mco', 'MD03G1109900' => 'mdo', 'MD03G1134800' => 'mdo', 'MD05G1348000' => 'mdo', 'MD10G1322400' => 'mdo', 'MD11G1123300' => 'mdo', 'MD11G1157600' => 'mdo', 'Medtr2g084875' => 'mtr', 'Medtr2g088130' => 'mtr', 'Medtr4g055310' => 'mtr', 'Medtr4g061070' => 'mtr', 'Medtr4g132250' => 'mtr', 'MELO3C004795.2' => 'cme', 'MELO3C004797.2' => 'cme', 'MELO3C007396.2' => 'cme', 'MELO3C019277.2' => 'cme', 'MELO3C021449.2' => 'cme', 'MELO3C025736.2' => 'cme', 'Migut.D02175' => 'egut', 'Migut.H01573' => 'egut', 'Migut.M01327' => 'egut', 'Migut.N02513' => 'egut', 'MSTRG.14638' => 'ama', 'MSTRG.18632' => 'ama', 'MSTRG.7203' => 'ama', 'Nitab4.5_0000533g0140' => 'nta', 'Nitab4.5_0000888g0150' => 'nta', 'Nitab4.5_0001453g0040' => 'nta', 'Nitab4.5_0002827g0090' => 'nta', 'Nitab4.5_0003082g0040' => 'nta', 'Nitab4.5_0007799g0040' => 'nta', 'Nitab4.5_0008983g0010' => 'nta', 'Nitab4.5_0009017g0020' => 'nta', 'Nn1g02132' => 'nnu', 'Nn1g03492' => 'nnu', 'Nn1g03493' => 'nnu', 'Nn1g03494' => 'nnu', 'Nn1g07164' => 'nnu', 'Nn1g07291' => 'nnu', 'Nn2g10655' => 'nnu', 'Nn2g11652' => 'nnu', 'Nn2g14008' => 'nnu', 'Nn3g17476' => 'nnu', 'Nn3g17477' => 'nnu', 'Nn4g22370' => 'nnu', 'Nn4g25255' => 'nnu', 'Nn5g27755' => 'nnu', 'Nn6g34260' => 'nnu', 'Nn6g35041' => 'nnu', 'Oeu005924.1' => 'oeu', 'Oeu008383.1' => 'oeu', 'Oeu014928.1' => 'oeu', 'Oeu019889.1' => 'oeu', 'Oeu022271.1' => 'oeu', 'Oeu025271.1' => 'oeu', 'Oeu036302.1' => 'oeu', 'Oeu044100.1' => 'oeu', 'Os01g0528300' => 'osa', 'Os03g0286200' => 'osa', 'Os04g0406600' => 'osa', 'Os07g0512000' => 'osa', 'Os07g0694600' => 'osa', 'Os08g0411000' => 'osa', 'Os09g0565700' => 'osa', 'Os09g0566050' => 'osa', 'Os10g0523700' => 'osa', 'Peaxi162Scf00002g00514' => 'pax', 'Peaxi162Scf00047g01817' => 'pax', 'Peaxi162Scf00114g00001' => 'pax', 'Peaxi162Scf00147g00613' => 'pax', 'Peaxi162Scf00389g00425' => 'pax', 'PGR042G1139' => 'pgr', 'PGR042G3273' => 'pgr', 'PGR102G2180' => 'pgr', 'PGR119G0234' => 'pgr', 'PGR119G0668' => 'pgr', 'PGSC0003DMG400007122' => 'stu', 'PGSC0003DMG400016478' => 'stu', 'PGSC0003DMG400025374' => 'stu', 'PGSC0003DMG400026536' => 'stu', 'Phvul.003G079600' => 'pvu', 'Phvul.005G115600' => 'pvu', 'Phvul.005G127100' => 'pvu', 'Phvul.006G149500' => 'pvu', 'Phvul.006G149600' => 'pvu', 'Phvul.011G071800' => 'pvu', 'Phvul.011G090400' => 'pvu', 'Potri.004G013400' => 'ptr', 'Potri.004G188100' => 'ptr', 'Potri.008G195500' => 'ptr', 'Potri.009G148800' => 'ptr', 'Potri.011G004700' => 'ptr', 'Pp3c17_22810' => 'ppa', 'Pp3c18_4480' => 'ppa', 'Pp3c19_13030' => 'ppa', 'Pp3c1_33620' => 'ppa', 'Pp3c2_9380' => 'ppa', 'PRCOL_00001023' => 'pco', 'Prupe.3G216300' => 'ppe', 'Prupe.4G019500' => 'ppe', 'Prupe.6G092500' => 'ppe', 'Prupe.6G119200' => 'ppe', 'Psat0s1945g0080' => 'psa', 'Psat0s4167g0040' => 'psa', 'Psat1g185800' => 'psa', 'Psat4g006440' => 'psa', 'Psat4g006480' => 'psa', 'Psat4g168120' => 'psa', 'Psat5g255680' => 'psa', 'Psat5g261760' => 'psa', 'Psat7g222120' => 'psa', 'PSO063G7252' => 'pso', 'PSO170G4778' => 'pso', 'PSO210G2249' => 'pso', 'PSO339G2411' => 'pso', 'PSO339G2457' => 'pso', 'PSO339G2854' => 'pso', 'PSO339G4288' => 'pso', 'PSO339G4615' => 'pso', 'PSO384G2796' => 'pso', 'PSO384G2940' => 'pso', 'PSO384G4227' => 'pso', 'PSO478G1425' => 'pso', 'PSO541G3863' => 'pso', 'PSO675G0507' => 'pso', 'PSO782G0338' => 'pso', 'PSO832G0644' => 'pso', 'QL01p013664' => 'qlo', 'QL01p036598' => 'qlo', 'QL05p072984' => 'qlo', 'QL08p005768' => 'qlo', 'QL08p032743' => 'qlo', 'QL93p0073_0439' => 'qlo', 'QL93p0073_0444' => 'qlo', 'RcHm_v2.0_Chr5g0002851' => 'rch', 'RcHm_v2.0_Chr5g0055201' => 'rch', 'RcHm_v2.0_Chr5g0061191' => 'rch', 'RcHm_v2.0_Chr7g0203231' => 'rch', 'Rhsim01G0208100' => 'rsi', 'Rhsim01G0208200' => 'rsi', 'Rhsim02G0106500' => 'rsi', 'Rhsim03G0107900' => 'rsi', 'Rhsim06G0163400' => 'rsi', 'Rhsim13G0105200' => 'rsi', 'Sabra04G0006300' => 'sbr', 'Sabra04G0127000' => 'sbr', 'Sabra08G0148700' => 'sbr', 'Sabra09G0117400' => 'sbr', 'SalBow1G3326' => 'sbo', 'SalBow3G3228' => 'sbo', 'SalBow6G1634' => 'sbo', 'SalBow6G3603' => 'sbo', 'SalBow6G5266' => 'sbo', 'SalBow7G2265' => 'sbo', 'SalBow8G0850' => 'sbo', 'SalBow8G2592' => 'sbo', 'Sc05g0009240' => 'sci', 'Sc12g0002300' => 'sci', 'Sc21g0000100' => 'sci', 'Sc21g0004720' => 'sci', 'Sed0002949' => 'sed', 'Sed0004114' => 'sed', 'Sed0004306' => 'sed', 'Sed0006172' => 'sed', 'Sed0008413' => 'sed', 'Sed0013809' => 'sed', 'Sed0019556' => 'sed', 'SEGI_03570' => 'sgi', 'SEGI_07859' => 'sgi', 'SEGI_15042' => 'sgi', 'SEGI_16263' => 'sgi', 'SEGI_16552' => 'sgi', 'SEGI_24331' => 'sgi', 'SEGI_27316' => 'sgi', 'SEGI_29521' => 'sgi', 'SEGI_41342' => 'sgi', 'SGA_v2.0_scaffold27G11617' => 'sas', 'SGA_v2.0_scaffold316G48428' => 'sas', 'SGA_v2.0_scaffold49G18261' => 'sas', 'SGA_v2.0_scaffold7G03831' => 'sas', 'SGA_v2.0_scaffold93G28359' => 'sas', 'SHI02210' => 'shi', 'SHI06028' => 'shi', 'SHI06321' => 'shi', 'SMO111G0012' => 'smo', 'SMO228G0080' => 'smo', 'SMO356G0756' => 'smo', 'Solyc02g080620.3' => 'sly', 'Solyc06g074530.1' => 'sly', 'Solyc11g066890.1' => 'sly', 'Solyc11g072520.3' => 'sly', 'Sopen02g025330' => 'spe', 'Sopen06g031000' => 'spe', 'Sopen09g008240' => 'spe', 'Sopen09g025210' => 'spe', 'Sopen11g026600' => 'spe', 'Sopen11g030170' => 'spe', 'Sp1g10420' => 'spa', 'Sp3g06570' => 'spa', 'Sp4g10660' => 'spa', 'Sp5g16460' => 'spa', 'Sp6g22710' => 'spa', 'TAR365G0112' => 'tar', 'TAR369G0717' => 'tar', 'TAR374G0976' => 'tar', 'TAR623G1128' => 'tar', 'TAR626G1937' => 'tar', 'TAR627G0123' => 'tar', 'TAR628G0305' => 'tar', 'TAR636G1176' => 'tar', 'TAR636G2442' => 'tar', 'THA.LOC104800556' => 'tha', 'THA.LOC104809501' => 'tha', 'THA.LOC104815126' => 'tha', 'THA.LOC104815732' => 'tha', 'THA.LOC104823528' => 'tha', 'Thecc.02G365600' => 'tca', 'Thecc.06G222300' => 'tca', 'Thecc.09G261800' => 'tca', 'Thecc.09G291400' => 'tca', 'Thhalv10003028m.g' => 'esa', 'Thhalv10007886m.g' => 'esa', 'Thhalv10016085m.g' => 'esa', 'Thhalv10016681m.g' => 'esa', 'Thhalv10020951m.g' => 'esa', 'TPR.G15598' => 'tpr', 'TPR.G29305' => 'tpr', 'TPR.G32395' => 'tpr', 'TPR.G36998' => 'tpr', 'TPR.G4227' => 'tpr', 'TWI18G1433' => 'twi', 'TWI31G0755' => 'twi', 'TWI38G0912' => 'twi', 'TWI75G1097' => 'twi', 'TWI75G1619' => 'twi', 'TWI79G1336' => 'twi', 'unitig_0.g943' => 'ugi', 'unitig_0.g944' => 'ugi', 'unitig_22.g6646' => 'ugi', 'unitig_37.g12681' => 'ugi', 'unitig_8.g3290' => 'ugi', 'vmacro03278' => 'vma', 'vmacro12197' => 'vma', 'vmacro14478' => 'vma', 'vmacro15787' => 'vma', 'vmacro15789' => 'vma', 'vmacro15790' => 'vma', 'vmacro15806' => 'vma', 'vmacro22907' => 'vma', 'vmacro22908' => 'vma', 'vmacro22909' => 'vma', 'vmacro23108' => 'vma', 'VMungo0540G0540' => 'vmu', 'VMungo0540G2468' => 'vmu', 'VMungo1080G0390' => 'vmu', 'VMungo1080G1165' => 'vmu', 'VMungo1127G0170' => 'vmu', 'VMungo1127G2099' => 'vmu', 'VMungo1215G3013' => 'vmu', 'Zm00001eb013110' => 'zma', 'Zm00001eb084260' => 'zma', 'Zm00001eb096110' => 'zma', 'Zm00001eb217510' => 'zma', 'Zm00001eb322550' => 'zma', 'Zm00001eb390770' => 'zma', 'Zm00001eb397170' => 'zma', 'Zm00001eb404610' => 'zma', 'Zm00001eb421790' => 'zma' ) $gf_id = 'HOM05D000911' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000911' ) $data_identifier = 'HOM05D000911' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 16, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 5, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 6, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 8, 'nnu' => (int) 16, 'oeu' => (int) 8, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 5, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 16, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421790' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000911', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27780' => 'bna', 'A03p35380' => 'bna', 'A04p21160' => 'bna', 'A05p40570' => 'bna', 'A06p26900' => 'bna', 'A08p33230' => 'bna', 'A09p65960' => 'bna', 'A10p18290' => 'bna', 'Aa31LG1G12990' => 'aar', 'Aa31LG1G2980' => 'aar', 'Aa31LG4G14320' => 'aar', 'Aa31LG7G11800' => 'aar', 'Aa31sc36G50' => 'aar', 'Aa31sc36G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3721' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5459' => 'aag', 'Actinidia03028' => 'ach', 'Actinidia03753' => 'ach', 'Actinidia04187' => 'ach', 'Actinidia05509' => 'ach', 'Actinidia24180' => 'ach', 'Actinidia26906' => 'ach', 'Actinidia37097' => 'ach', 'Actinidia38249' => 'ach', 'Ah.01g003470' => 'amhyb', 'Ah.01g004580' => 'amhyb', 'Ah.01g014850' => 'amhyb', 'Ah.01g016830' => 'amhyb', 'Ah.14g088000' => 'amhyb', 'AL1G22980' => 'aly', 'AL3G18990' => 'aly', 'AL4G22440' => 'aly', 'AL4G33180' => 'aly', 'AL5G22920' => 'aly', 'AL6G33660' => 'aly', 'AL8G20720' => 'aly', 'Aqoxy1G00935' => 'aox', 'Aqoxy1G02094' => 'aox', 'Aqoxy2G01239' => 'aox', 'Aqoxy4G01870' => 'aox', 'Aqoxy7G00450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.36ZVTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71EM27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5D6C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH3WRE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3NCM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RIM768' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YB5YRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z36GDV' => 'arhy', 'AT1G08250' => 'ath', 'AT1G11790' => 'ath', 'AT2G27820' => 'ath', 'AT3G07630' => 'ath', 'AT3G44720' => 'ath', 'AT5G22630' => 'ath', 'ATR0693G304' => 'atr', 'ATR0794G109' => 'atr', 'ATR0820G120' => 'atr', 'ATR1159G064' => 'atr', 'Atru.chr10.2239' => 'acertr', 'Atru.chr3.3371' => 'acertr', 'Atru.chr6.3202' => 'acertr', 'AUR62006499' => 'cqu', 'AUR62012718' => 'cqu', 'AUR62021938' => 'cqu', 'AUR62023932' => 'cqu', 'AUR62025034' => 'cqu', 'AUR62025035' => 'cqu', 'AUR62038307' => 'cqu', 'AUR62043466' => 'cqu', 'BcaB02g10748' => 'bca', 'BcaB03g13231' => 'bca', 'BcaB03g14689' => 'bca', 'BcaB05g22716' => 'bca', 'BcaB06g28172' => 'bca', 'BcaB08g36413' => 'bca', 'BcaC01g02186' => 'bca', 'BcaC01g04272' => 'bca', 'BcaC02g08080' => 'bca', 'BcaC02g08227' => 'bca', 'BcaC03g13901' => 'bca', 'BcaC04g19593' => 'bca', 'BcaC04g20874' => 'bca', 'BcaC05g29557' => 'bca', 'BcaC06g35505' => 'bca', 'BcaC07g41954' => 'bca', 'BcaC07g41955' => 'bca', 'BcaC07g41956' => 'bca', 'BcaC07g42519' => 'bca', 'BcaC07g42520' => 'bca', 'BcaC07g42523' => 'bca', 'BcaC07g42524' => 'bca', 'BcaC07g42525' => 'bca', 'BcaC08g47480' => 'bca', 'BcaC08g47481' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00530' => 'bna', 'BolC2t07178H' => 'bol', 'BolC3t16567H' => 'bol', 'BolC4t27234H' => 'bol', 'BolC5t29728H' => 'bol', 'BolC5t34622H' => 'bol', 'BolC6t40321H' => 'bol', 'BolC7t42028H' => 'bol', 'BolC8t49125H' => 'bol', 'BolC8t52538H' => 'bol', 'BolC8t52539H' => 'bol', 'BolC9t56681H' => 'bol', 'BolC9t58266H' => 'bol', 'BolSC21t60294H' => 'bol', 'BraA02t05670Z' => 'bra', 'BraA03t12716Z' => 'bra', 'BraA04t17685Z' => 'bra', 'BraA05t22788Z' => 'bra', 'BraA06t24032Z' => 'bra', 'BraA06t25625Z' => 'bra', 'BraA07t27930Z' => 'bra', 'BraA08t35242Z' => 'bra', 'BraA09t38609Z' => 'bra', 'BraA10t43905Z' => 'bra', 'C02p11060' => 'bna', 'C03p42990' => 'bna', 'C03p67310' => 'bna', 'C04p56990' => 'bna', 'C04p58660' => 'bna', 'C05p09890' => 'bna', 'C05p59680' => 'bna', 'C06p19830' => 'bna', 'C06p53040' => 'bna', 'C07p15230' => 'bna', 'C08p50070' => 'bna', 'C08p50090' => 'bna', 'C09p38330' => 'bna', 'C09p53940' => 'bna', 'CAN.G1014.1' => 'can', 'CAN.G644.30' => 'can', 'CAN.G84.47' => 'can', 'CAN.G919.8' => 'can', 'CANSAT54G0113' => 'cansat', 'CANSAT54G1286' => 'cansat', 'CANSAT64G1020' => 'cansat', 'CARHR008080' => 'chi', 'CARHR008090' => 'chi', 'CARHR012130' => 'chi', 'CARHR038390' => 'chi', 'CARHR082330' => 'chi', 'CARHR120520' => 'chi', 'CARHR151470' => 'chi', 'CARHR190950' => 'chi', 'Carub.0001s0760' => 'cru', 'Carub.0001s1146' => 'cru', 'Carub.0003s0721' => 'cru', 'Carub.0004s0858' => 'cru', 'Carub.0005s1040' => 'cru', 'Carub.0006s2035' => 'cru', 'Carub.0015s0005' => 'cru', 'Ca_01607_v3' => 'car', 'Ca_01677_v3' => 'car', 'Ca_06087_v3' => 'car', 'Ca_19238_v3' => 'car', 'Ca_19373_v3' => 'car', 'Ca_21079_v3' => 'car', 'CBR_g54016' => 'cbr', 'CBR_g54018' => 'cbr', 'CBR_g54020' => 'cbr', 'Cc01_g09780' => 'ccan', 'Cc01_g11680' => 'ccan', 'Cc02_g15610' => 'ccan', 'Cc05_g04350' => 'ccan', 'Cc09_g01580' => 'ccan', 'CDE01G0795' => 'cde', 'CDE02G2024' => 'cde', 'CDE02G2260' => 'cde', 'CDE02G4561' => 'cde', 'CDE05G2733' => 'cde', 'CDE05G3422' => 'cde', 'CDE06G2003' => 'cde', 'CDE08G0576' => 'cde', 'CDE09G0048' => 'cde', 'CDE11G0805' => 'cde', 'Cfa003644' => 'cfa', 'Cfa006290' => 'cfa', 'Cfa010080' => 'cfa', 'Cfa011376' => 'cfa', 'Cfa011576' => 'cfa', 'Cfa011577' => 'cfa', 'Cfa014389' => 'cfa', 'Ciclev10006044m.g' => 'ccl', 'Ciclev10006954m.g' => 'ccl', 'Ciclev10015131m.g' => 'ccl', 'Ciclev10015580m.g' => 'ccl', 'Ciclev10028359m.g' => 'ccl', 'Ciclev10028573m.g' => 'ccl', 'CiPaw.03G159300' => 'cil', 'CiPaw.04G115100' => 'cil', 'CiPaw.09G092800' => 'cil', 'CiPaw.10G071800' => 'cil', 'CiPaw.13G105800' => 'cil', 'CiPaw.13G141000' => 'cil', 'CiPaw.14G103400' => 'cil', 'ClCG01G012700' => 'cla', 'ClCG01G012720' => 'cla', 'ClCG01G021920' => 'cla', 'ClCG02G008870' => 'cla', 'ClCG02G020840' => 'cla', 'ClCG02G021930' => 'cla', 'COL.COLO4_19302' => 'col', 'COL.COLO4_25262' => 'col', 'COL.COLO4_31788' => 'col', 'Cpa.g.c34684' => 'cpa', 'Cpa.g.c36520.1' => 'cpa', 'Cpa.g.c45626' => 'cpa', 'Cpa.g.sc121.17' => 'cpa', 'Cpa.g.sc13.22' => 'cpa', 'Cpa.g.sc87.88' => 'cpa', 'Cre06.g261800' => 'cre', 'CsaV3_1G014500' => 'csa', 'CsaV3_1G014510' => 'csa', 'CsaV3_2G034880' => 'csa', 'CsaV3_6G014760' => 'csa', 'CsaV3_6G021500' => 'csa', 'CsaV3_6G048980' => 'csa', 'CSS0002511' => 'camsi', 'CSS0007556' => 'camsi', 'CSS0008532' => 'camsi', 'CSS0009709' => 'camsi', 'CSS0010486' => 'camsi', 'CSS0016768' => 'camsi', 'CSS0023512' => 'camsi', 'CSS0025341' => 'camsi', 'CSS0027999' => 'camsi', 'CSS0028944' => 'camsi', 'CSS0032292' => 'camsi', 'CSS0032464' => 'camsi', 'CSS0037153' => 'camsi', 'CSS0039256' => 'camsi', 'CSS0048392' => 'camsi', 'CSS0050458' => 'camsi', 'DCAR_004224' => 'dca', 'DCAR_006147' => 'dca', 'DCAR_006465' => 'dca', 'DCAR_008159' => 'dca', 'DCAR_012164' => 'dca', 'DCAR_019764' => 'dca', 'Dinv05418' => 'din', 'Dinv10839' => 'din', 'Dinv12521' => 'din', 'Dinv13900' => 'din', 'Dinv29426' => 'din', 'Duzib150G0263' => 'dzi', 'Duzib168G1178' => 'dzi', 'Duzib168G1924' => 'dzi', 'Duzib170G0299' => 'dzi', 'Duzib170G0813' => 'dzi', 'Duzib235G1128' => 'dzi', 'Duzib248G1060' => 'dzi', 'ECA232G1910' => 'eca', 'ECA233G4621' => 'eca', 'ECA238G1216' => 'eca', 'ECA238G1784' => 'eca', 'ECA248G1242' => 'eca', 'EL10Ac8g20071' => 'bvu', 'EL10Ac9g21086' => 'bvu', 'EL10Ac9g22407' => 'bvu', 'EL10Ac9g22412' => 'bvu', 'Eucgr.A01119' => 'egr', 'Eucgr.E04043' => 'egr', 'Eucgr.J00428' => 'egr', 'Eucgr.J00958' => 'egr', 'FAN11G3091' => 'fan', 'FAN11G3651' => 'fan', 'FAN16G2566' => 'fan', 'FAN21G3155' => 'fan', 'FAN21G3400' => 'fan', 'FAN21G3543' => 'fan', 'FAN25G0234' => 'fan', 'FAN25G1422' => 'fan', 'FAN25G3392' => 'fan', 'FvH4_3g01940' => 'fve', 'FvH4_3g29870' => 'fve', 'FvH4_3g33680' => 'fve', 'Glyma.09G004200' => 'gma', 'Glyma.11G151288' => 'gma', 'Glyma.11G189100' => 'gma', 'Glyma.12G072500' => 'gma', 'Glyma.12G085500' => 'gma', 'Glyma.12G181800' => 'gma', 'Glyma.12G193000' => 'gma', 'Glyma.13G309300' => 'gma', 'Glyma.13G319000' => 'gma', 'Glyma.17G012600' => 'gma', 'Gohir.A06G148600' => 'ghi', 'Gohir.A07G115800' => 'ghi', 'Gohir.A08G003600' => 'ghi', 'Gohir.A09G093300' => 'ghi', 'Gohir.A09G105400' => 'ghi', 'Gohir.A09G105500' => 'ghi', 'Gohir.D06G154600' => 'ghi', 'Gohir.D07G120200' => 'ghi', 'Gohir.D08G013900' => 'ghi', 'Gohir.D09G093100' => 'ghi', 'Gohir.D09G102200' => 'ghi', 'Gohir.D09G102300' => 'ghi', 'Gorai.001G129400' => 'gra', 'Gorai.004G008200' => 'gra', 'Gorai.006G109800' => 'gra', 'Gorai.006G119500' => 'gra', 'Gorai.006G121300' => 'gra', 'Gorai.010G180700' => 'gra', 'GSVIVG01012716001' => 'vvi', 'GSVIVG01025118001' => 'vvi', 'GSVIVG01030439001' => 'vvi', 'GSVIVG01031397001' => 'vvi', 'HanXRQChr01g0004201' => 'han', 'HanXRQChr02g0054941' => 'han', 'HanXRQChr05g0141811' => 'han', 'HanXRQChr07g0197751' => 'han', 'HanXRQChr11g0346691' => 'han', 'HanXRQChr13g0396971' => 'han', 'HanXRQChr14g0432951' => 'han', 'HanXRQChr14g0452001' => 'han', 'HanXRQChr15g0496681' => 'han', 'HanXRQChr17g0557491' => 'han', 'HanXRQChr17g0557501' => 'han', 'Haze_06809' => 'cav', 'Haze_12852' => 'cav', 'Haze_15850' => 'cav', 'Haze_23446' => 'cav', 'Haze_23942' => 'cav', 'Haze_23943' => 'cav', 'Hma1.2p1_0091F.1_g046450' => 'hma', 'Hma1.2p1_0128F.1_g059910' => 'hma', 'Hma1.2p1_0249F.1_g102260' => 'hma', 'Hma1.2p1_0453F.1_g156190' => 'hma', 'Hma1.2p1_0695F.1_g204380' => 'hma', 'Hma1.2p1_0749F.1_g212650' => 'hma', 'Hma1.2p1_2156F.1_g315420' => 'hma', 'Hma1.2p1_2686F.1_g326940' => 'hma', 'HPP92_006428' => 'vpl', 'HPP92_012069' => 'vpl', 'HPP92_014129' => 'vpl', 'HPP92_014133' => 'vpl', 'HPP92_017315' => 'vpl', 'HPP92_026445' => 'vpl', 'HPP92_026446' => 'vpl', 'Hund00774' => 'sun', 'Hund07682' => 'sun', 'Hund21413' => 'sun', 'Hund23462' => 'sun', 'Hund23463' => 'sun', 'Lalb_Chr03g0027911' => 'lal', 'Lalb_Chr13g0304271' => 'lal', 'Lalb_Chr19g0137471' => 'lal', 'Lalb_Chr22g0350651' => 'lal', 'Lalb_Chr24g0395151' => 'lal', 'Lj1A1231T40' => 'lonja', 'Lj1A221T48' => 'lonja', 'Lj1C924T12' => 'lonja', 'Lj2C993G6' => 'lonja', 'Lj3g0005790' => 'lja', 'Lj3g0015432' => 'lja', 'Lj3g0017722' => 'lja', 'Lj3g0018497' => 'lja', 'Lj4g0025071' => 'lja', 'Lsat_1_v5_gn_1_129680' => 'lsa', 'Lsat_1_v5_gn_2_25321' => 'lsa', 'Lsat_1_v5_gn_2_95461' => 'lsa', 'Lsat_1_v5_gn_4_159620' => 'lsa', 'Lsat_1_v5_gn_6_41301' => 'lsa', 'Lsat_1_v5_gn_6_74660' => 'lsa', 'Lsat_1_v5_gn_7_11520' => 'lsa', 'Lsat_1_v5_gn_9_67680' => 'lsa', 'Manes.04G008300' => 'mes', 'Manes.04G008400' => 'mes', 'Manes.04G026500' => 'mes', 'Manes.10G135300' => 'mes', 'Manes.11G157300' => 'mes', 'Manes.12G074000' => 'mes', 'Manes.16G006200' => 'mes', 'Manes.17G026400' => 'mes', 'Mapoly0024s0086' => 'mpo', 'Mapoly0024s0087' => 'mpo', 'Mapoly0071s0057' => 'mpo', 'Mapoly0204s0012' => 'mpo', 'MBI04_g37681_MAGBIO' => 'mbi', 'MBI05_g17779_MAGBIO' => 'mbi', 'MBI12_g31184_MAGBIO' => 'mbi', 'MBI17_g11083_MAGBIO' => 'mbi', 'MBI18_g03883_MAGBIO' => 'mbi', 'MBI18_g28940_MAGBIO' => 'mbi', 'MCO01G690' => 'mco', 'MD03G1109900' => 'mdo', 'MD03G1134800' => 'mdo', 'MD05G1348000' => 'mdo', 'MD10G1322400' => 'mdo', 'MD11G1123300' => 'mdo', 'MD11G1157600' => 'mdo', 'Medtr2g084875' => 'mtr', 'Medtr2g088130' => 'mtr', 'Medtr4g055310' => 'mtr', 'Medtr4g061070' => 'mtr', 'Medtr4g132250' => 'mtr', 'MELO3C004795.2' => 'cme', 'MELO3C004797.2' => 'cme', 'MELO3C007396.2' => 'cme', 'MELO3C019277.2' => 'cme', 'MELO3C021449.2' => 'cme', 'MELO3C025736.2' => 'cme', 'Migut.D02175' => 'egut', 'Migut.H01573' => 'egut', 'Migut.M01327' => 'egut', 'Migut.N02513' => 'egut', 'MSTRG.14638' => 'ama', 'MSTRG.18632' => 'ama', 'MSTRG.7203' => 'ama', 'Nitab4.5_0000533g0140' => 'nta', 'Nitab4.5_0000888g0150' => 'nta', 'Nitab4.5_0001453g0040' => 'nta', 'Nitab4.5_0002827g0090' => 'nta', 'Nitab4.5_0003082g0040' => 'nta', 'Nitab4.5_0007799g0040' => 'nta', 'Nitab4.5_0008983g0010' => 'nta', 'Nitab4.5_0009017g0020' => 'nta', 'Nn1g02132' => 'nnu', 'Nn1g03492' => 'nnu', 'Nn1g03493' => 'nnu', 'Nn1g03494' => 'nnu', 'Nn1g07164' => 'nnu', 'Nn1g07291' => 'nnu', 'Nn2g10655' => 'nnu', 'Nn2g11652' => 'nnu', 'Nn2g14008' => 'nnu', 'Nn3g17476' => 'nnu', 'Nn3g17477' => 'nnu', 'Nn4g22370' => 'nnu', 'Nn4g25255' => 'nnu', 'Nn5g27755' => 'nnu', 'Nn6g34260' => 'nnu', 'Nn6g35041' => 'nnu', 'Oeu005924.1' => 'oeu', 'Oeu008383.1' => 'oeu', 'Oeu014928.1' => 'oeu', 'Oeu019889.1' => 'oeu', 'Oeu022271.1' => 'oeu', 'Oeu025271.1' => 'oeu', 'Oeu036302.1' => 'oeu', 'Oeu044100.1' => 'oeu', 'Os01g0528300' => 'osa', 'Os03g0286200' => 'osa', 'Os04g0406600' => 'osa', 'Os07g0512000' => 'osa', 'Os07g0694600' => 'osa', 'Os08g0411000' => 'osa', 'Os09g0565700' => 'osa', 'Os09g0566050' => 'osa', 'Os10g0523700' => 'osa', 'Peaxi162Scf00002g00514' => 'pax', 'Peaxi162Scf00047g01817' => 'pax', 'Peaxi162Scf00114g00001' => 'pax', 'Peaxi162Scf00147g00613' => 'pax', 'Peaxi162Scf00389g00425' => 'pax', 'PGR042G1139' => 'pgr', 'PGR042G3273' => 'pgr', 'PGR102G2180' => 'pgr', 'PGR119G0234' => 'pgr', 'PGR119G0668' => 'pgr', 'PGSC0003DMG400007122' => 'stu', 'PGSC0003DMG400016478' => 'stu', 'PGSC0003DMG400025374' => 'stu', 'PGSC0003DMG400026536' => 'stu', 'Phvul.003G079600' => 'pvu', 'Phvul.005G115600' => 'pvu', 'Phvul.005G127100' => 'pvu', 'Phvul.006G149500' => 'pvu', 'Phvul.006G149600' => 'pvu', 'Phvul.011G071800' => 'pvu', 'Phvul.011G090400' => 'pvu', 'Potri.004G013400' => 'ptr', 'Potri.004G188100' => 'ptr', 'Potri.008G195500' => 'ptr', 'Potri.009G148800' => 'ptr', 'Potri.011G004700' => 'ptr', 'Pp3c17_22810' => 'ppa', 'Pp3c18_4480' => 'ppa', 'Pp3c19_13030' => 'ppa', 'Pp3c1_33620' => 'ppa', 'Pp3c2_9380' => 'ppa', 'PRCOL_00001023' => 'pco', 'Prupe.3G216300' => 'ppe', 'Prupe.4G019500' => 'ppe', 'Prupe.6G092500' => 'ppe', 'Prupe.6G119200' => 'ppe', 'Psat0s1945g0080' => 'psa', 'Psat0s4167g0040' => 'psa', 'Psat1g185800' => 'psa', 'Psat4g006440' => 'psa', 'Psat4g006480' => 'psa', 'Psat4g168120' => 'psa', 'Psat5g255680' => 'psa', 'Psat5g261760' => 'psa', 'Psat7g222120' => 'psa', 'PSO063G7252' => 'pso', 'PSO170G4778' => 'pso', 'PSO210G2249' => 'pso', 'PSO339G2411' => 'pso', 'PSO339G2457' => 'pso', 'PSO339G2854' => 'pso', 'PSO339G4288' => 'pso', 'PSO339G4615' => 'pso', 'PSO384G2796' => 'pso', 'PSO384G2940' => 'pso', 'PSO384G4227' => 'pso', 'PSO478G1425' => 'pso', 'PSO541G3863' => 'pso', 'PSO675G0507' => 'pso', 'PSO782G0338' => 'pso', 'PSO832G0644' => 'pso', 'QL01p013664' => 'qlo', 'QL01p036598' => 'qlo', 'QL05p072984' => 'qlo', 'QL08p005768' => 'qlo', 'QL08p032743' => 'qlo', 'QL93p0073_0439' => 'qlo', 'QL93p0073_0444' => 'qlo', 'RcHm_v2.0_Chr5g0002851' => 'rch', 'RcHm_v2.0_Chr5g0055201' => 'rch', 'RcHm_v2.0_Chr5g0061191' => 'rch', 'RcHm_v2.0_Chr7g0203231' => 'rch', 'Rhsim01G0208100' => 'rsi', 'Rhsim01G0208200' => 'rsi', 'Rhsim02G0106500' => 'rsi', 'Rhsim03G0107900' => 'rsi', 'Rhsim06G0163400' => 'rsi', 'Rhsim13G0105200' => 'rsi', 'Sabra04G0006300' => 'sbr', 'Sabra04G0127000' => 'sbr', 'Sabra08G0148700' => 'sbr', 'Sabra09G0117400' => 'sbr', 'SalBow1G3326' => 'sbo', 'SalBow3G3228' => 'sbo', 'SalBow6G1634' => 'sbo', 'SalBow6G3603' => 'sbo', 'SalBow6G5266' => 'sbo', 'SalBow7G2265' => 'sbo', 'SalBow8G0850' => 'sbo', 'SalBow8G2592' => 'sbo', 'Sc05g0009240' => 'sci', 'Sc12g0002300' => 'sci', 'Sc21g0000100' => 'sci', 'Sc21g0004720' => 'sci', 'Sed0002949' => 'sed', 'Sed0004114' => 'sed', 'Sed0004306' => 'sed', 'Sed0006172' => 'sed', 'Sed0008413' => 'sed', 'Sed0013809' => 'sed', 'Sed0019556' => 'sed', 'SEGI_03570' => 'sgi', 'SEGI_07859' => 'sgi', 'SEGI_15042' => 'sgi', 'SEGI_16263' => 'sgi', 'SEGI_16552' => 'sgi', 'SEGI_24331' => 'sgi', 'SEGI_27316' => 'sgi', 'SEGI_29521' => 'sgi', 'SEGI_41342' => 'sgi', 'SGA_v2.0_scaffold27G11617' => 'sas', 'SGA_v2.0_scaffold316G48428' => 'sas', 'SGA_v2.0_scaffold49G18261' => 'sas', 'SGA_v2.0_scaffold7G03831' => 'sas', 'SGA_v2.0_scaffold93G28359' => 'sas', 'SHI02210' => 'shi', 'SHI06028' => 'shi', 'SHI06321' => 'shi', 'SMO111G0012' => 'smo', 'SMO228G0080' => 'smo', 'SMO356G0756' => 'smo', 'Solyc02g080620.3' => 'sly', 'Solyc06g074530.1' => 'sly', 'Solyc11g066890.1' => 'sly', 'Solyc11g072520.3' => 'sly', 'Sopen02g025330' => 'spe', 'Sopen06g031000' => 'spe', 'Sopen09g008240' => 'spe', 'Sopen09g025210' => 'spe', 'Sopen11g026600' => 'spe', 'Sopen11g030170' => 'spe', 'Sp1g10420' => 'spa', 'Sp3g06570' => 'spa', 'Sp4g10660' => 'spa', 'Sp5g16460' => 'spa', 'Sp6g22710' => 'spa', 'TAR365G0112' => 'tar', 'TAR369G0717' => 'tar', 'TAR374G0976' => 'tar', 'TAR623G1128' => 'tar', 'TAR626G1937' => 'tar', 'TAR627G0123' => 'tar', 'TAR628G0305' => 'tar', 'TAR636G1176' => 'tar', 'TAR636G2442' => 'tar', 'THA.LOC104800556' => 'tha', 'THA.LOC104809501' => 'tha', 'THA.LOC104815126' => 'tha', 'THA.LOC104815732' => 'tha', 'THA.LOC104823528' => 'tha', 'Thecc.02G365600' => 'tca', 'Thecc.06G222300' => 'tca', 'Thecc.09G261800' => 'tca', 'Thecc.09G291400' => 'tca', 'Thhalv10003028m.g' => 'esa', 'Thhalv10007886m.g' => 'esa', 'Thhalv10016085m.g' => 'esa', 'Thhalv10016681m.g' => 'esa', 'Thhalv10020951m.g' => 'esa', 'TPR.G15598' => 'tpr', 'TPR.G29305' => 'tpr', 'TPR.G32395' => 'tpr', 'TPR.G36998' => 'tpr', 'TPR.G4227' => 'tpr', 'TWI18G1433' => 'twi', 'TWI31G0755' => 'twi', 'TWI38G0912' => 'twi', 'TWI75G1097' => 'twi', 'TWI75G1619' => 'twi', 'TWI79G1336' => 'twi', 'unitig_0.g943' => 'ugi', 'unitig_0.g944' => 'ugi', 'unitig_22.g6646' => 'ugi', 'unitig_37.g12681' => 'ugi', 'unitig_8.g3290' => 'ugi', 'vmacro03278' => 'vma', 'vmacro12197' => 'vma', 'vmacro14478' => 'vma', 'vmacro15787' => 'vma', 'vmacro15789' => 'vma', 'vmacro15790' => 'vma', 'vmacro15806' => 'vma', 'vmacro22907' => 'vma', 'vmacro22908' => 'vma', 'vmacro22909' => 'vma', 'vmacro23108' => 'vma', 'VMungo0540G0540' => 'vmu', 'VMungo0540G2468' => 'vmu', 'VMungo1080G0390' => 'vmu', 'VMungo1080G1165' => 'vmu', 'VMungo1127G0170' => 'vmu', 'VMungo1127G2099' => 'vmu', 'VMungo1215G3013' => 'vmu', 'Zm00001eb013110' => 'zma', 'Zm00001eb084260' => 'zma', 'Zm00001eb096110' => 'zma', 'Zm00001eb217510' => 'zma', 'Zm00001eb322550' => 'zma', 'Zm00001eb390770' => 'zma', 'Zm00001eb397170' => 'zma', 'Zm00001eb404610' => 'zma', 'Zm00001eb421790' => 'zma' ), 'gf_id' => 'HOM05D000911', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000911' ), 'data_identifier' => 'HOM05D000911', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000911', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27780' => 'bna', 'A03p35380' => 'bna', 'A04p21160' => 'bna', 'A05p40570' => 'bna', 'A06p26900' => 'bna', 'A08p33230' => 'bna', 'A09p65960' => 'bna', 'A10p18290' => 'bna', 'Aa31LG1G12990' => 'aar', 'Aa31LG1G2980' => 'aar', 'Aa31LG4G14320' => 'aar', 'Aa31LG7G11800' => 'aar', 'Aa31sc36G50' => 'aar', 'Aa31sc36G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3721' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5459' => 'aag', 'Actinidia03028' => 'ach', 'Actinidia03753' => 'ach', 'Actinidia04187' => 'ach', 'Actinidia05509' => 'ach', 'Actinidia24180' => 'ach', 'Actinidia26906' => 'ach', 'Actinidia37097' => 'ach', 'Actinidia38249' => 'ach', 'Ah.01g003470' => 'amhyb', 'Ah.01g004580' => 'amhyb', 'Ah.01g014850' => 'amhyb', 'Ah.01g016830' => 'amhyb', 'Ah.14g088000' => 'amhyb', 'AL1G22980' => 'aly', 'AL3G18990' => 'aly', 'AL4G22440' => 'aly', 'AL4G33180' => 'aly', 'AL5G22920' => 'aly', 'AL6G33660' => 'aly', 'AL8G20720' => 'aly', 'Aqoxy1G00935' => 'aox', 'Aqoxy1G02094' => 'aox', 'Aqoxy2G01239' => 'aox', 'Aqoxy4G01870' => 'aox', 'Aqoxy7G00450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.36ZVTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71EM27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5D6C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH3WRE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3NCM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RIM768' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YB5YRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z36GDV' => 'arhy', 'AT1G08250' => 'ath', 'AT1G11790' => 'ath', 'AT2G27820' => 'ath', 'AT3G07630' => 'ath', 'AT3G44720' => 'ath', 'AT5G22630' => 'ath', 'ATR0693G304' => 'atr', 'ATR0794G109' => 'atr', 'ATR0820G120' => 'atr', 'ATR1159G064' => 'atr', 'Atru.chr10.2239' => 'acertr', 'Atru.chr3.3371' => 'acertr', 'Atru.chr6.3202' => 'acertr', 'AUR62006499' => 'cqu', 'AUR62012718' => 'cqu', 'AUR62021938' => 'cqu', 'AUR62023932' => 'cqu', 'AUR62025034' => 'cqu', 'AUR62025035' => 'cqu', 'AUR62038307' => 'cqu', 'AUR62043466' => 'cqu', 'BcaB02g10748' => 'bca', 'BcaB03g13231' => 'bca', 'BcaB03g14689' => 'bca', 'BcaB05g22716' => 'bca', 'BcaB06g28172' => 'bca', 'BcaB08g36413' => 'bca', 'BcaC01g02186' => 'bca', 'BcaC01g04272' => 'bca', 'BcaC02g08080' => 'bca', 'BcaC02g08227' => 'bca', 'BcaC03g13901' => 'bca', 'BcaC04g19593' => 'bca', 'BcaC04g20874' => 'bca', 'BcaC05g29557' => 'bca', 'BcaC06g35505' => 'bca', 'BcaC07g41954' => 'bca', 'BcaC07g41955' => 'bca', 'BcaC07g41956' => 'bca', 'BcaC07g42519' => 'bca', 'BcaC07g42520' => 'bca', 'BcaC07g42523' => 'bca', 'BcaC07g42524' => 'bca', 'BcaC07g42525' => 'bca', 'BcaC08g47480' => 'bca', 'BcaC08g47481' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00530' => 'bna', 'BolC2t07178H' => 'bol', 'BolC3t16567H' => 'bol', 'BolC4t27234H' => 'bol', 'BolC5t29728H' => 'bol', 'BolC5t34622H' => 'bol', 'BolC6t40321H' => 'bol', 'BolC7t42028H' => 'bol', 'BolC8t49125H' => 'bol', 'BolC8t52538H' => 'bol', 'BolC8t52539H' => 'bol', 'BolC9t56681H' => 'bol', 'BolC9t58266H' => 'bol', 'BolSC21t60294H' => 'bol', 'BraA02t05670Z' => 'bra', 'BraA03t12716Z' => 'bra', 'BraA04t17685Z' => 'bra', 'BraA05t22788Z' => 'bra', 'BraA06t24032Z' => 'bra', 'BraA06t25625Z' => 'bra', 'BraA07t27930Z' => 'bra', 'BraA08t35242Z' => 'bra', 'BraA09t38609Z' => 'bra', 'BraA10t43905Z' => 'bra', 'C02p11060' => 'bna', 'C03p42990' => 'bna', 'C03p67310' => 'bna', 'C04p56990' => 'bna', 'C04p58660' => 'bna', 'C05p09890' => 'bna', 'C05p59680' => 'bna', 'C06p19830' => 'bna', 'C06p53040' => 'bna', 'C07p15230' => 'bna', 'C08p50070' => 'bna', 'C08p50090' => 'bna', 'C09p38330' => 'bna', 'C09p53940' => 'bna', 'CAN.G1014.1' => 'can', 'CAN.G644.30' => 'can', 'CAN.G84.47' => 'can', 'CAN.G919.8' => 'can', 'CANSAT54G0113' => 'cansat', 'CANSAT54G1286' => 'cansat', 'CANSAT64G1020' => 'cansat', 'CARHR008080' => 'chi', 'CARHR008090' => 'chi', 'CARHR012130' => 'chi', 'CARHR038390' => 'chi', 'CARHR082330' => 'chi', 'CARHR120520' => 'chi', 'CARHR151470' => 'chi', 'CARHR190950' => 'chi', 'Carub.0001s0760' => 'cru', 'Carub.0001s1146' => 'cru', 'Carub.0003s0721' => 'cru', 'Carub.0004s0858' => 'cru', 'Carub.0005s1040' => 'cru', 'Carub.0006s2035' => 'cru', 'Carub.0015s0005' => 'cru', 'Ca_01607_v3' => 'car', 'Ca_01677_v3' => 'car', 'Ca_06087_v3' => 'car', 'Ca_19238_v3' => 'car', 'Ca_19373_v3' => 'car', 'Ca_21079_v3' => 'car', 'CBR_g54016' => 'cbr', 'CBR_g54018' => 'cbr', 'CBR_g54020' => 'cbr', 'Cc01_g09780' => 'ccan', 'Cc01_g11680' => 'ccan', 'Cc02_g15610' => 'ccan', 'Cc05_g04350' => 'ccan', 'Cc09_g01580' => 'ccan', 'CDE01G0795' => 'cde', 'CDE02G2024' => 'cde', 'CDE02G2260' => 'cde', 'CDE02G4561' => 'cde', 'CDE05G2733' => 'cde', 'CDE05G3422' => 'cde', 'CDE06G2003' => 'cde', 'CDE08G0576' => 'cde', 'CDE09G0048' => 'cde', 'CDE11G0805' => 'cde', 'Cfa003644' => 'cfa', 'Cfa006290' => 'cfa', 'Cfa010080' => 'cfa', 'Cfa011376' => 'cfa', 'Cfa011576' => 'cfa', 'Cfa011577' => 'cfa', 'Cfa014389' => 'cfa', 'Ciclev10006044m.g' => 'ccl', 'Ciclev10006954m.g' => 'ccl', 'Ciclev10015131m.g' => 'ccl', 'Ciclev10015580m.g' => 'ccl', 'Ciclev10028359m.g' => 'ccl', 'Ciclev10028573m.g' => 'ccl', 'CiPaw.03G159300' => 'cil', 'CiPaw.04G115100' => 'cil', 'CiPaw.09G092800' => 'cil', 'CiPaw.10G071800' => 'cil', 'CiPaw.13G105800' => 'cil', 'CiPaw.13G141000' => 'cil', 'CiPaw.14G103400' => 'cil', 'ClCG01G012700' => 'cla', 'ClCG01G012720' => 'cla', 'ClCG01G021920' => 'cla', 'ClCG02G008870' => 'cla', 'ClCG02G020840' => 'cla', 'ClCG02G021930' => 'cla', 'COL.COLO4_19302' => 'col', 'COL.COLO4_25262' => 'col', 'COL.COLO4_31788' => 'col', 'Cpa.g.c34684' => 'cpa', 'Cpa.g.c36520.1' => 'cpa', 'Cpa.g.c45626' => 'cpa', 'Cpa.g.sc121.17' => 'cpa', 'Cpa.g.sc13.22' => 'cpa', 'Cpa.g.sc87.88' => 'cpa', 'Cre06.g261800' => 'cre', 'CsaV3_1G014500' => 'csa', 'CsaV3_1G014510' => 'csa', 'CsaV3_2G034880' => 'csa', 'CsaV3_6G014760' => 'csa', 'CsaV3_6G021500' => 'csa', 'CsaV3_6G048980' => 'csa', 'CSS0002511' => 'camsi', 'CSS0007556' => 'camsi', 'CSS0008532' => 'camsi', 'CSS0009709' => 'camsi', 'CSS0010486' => 'camsi', 'CSS0016768' => 'camsi', 'CSS0023512' => 'camsi', 'CSS0025341' => 'camsi', 'CSS0027999' => 'camsi', 'CSS0028944' => 'camsi', 'CSS0032292' => 'camsi', 'CSS0032464' => 'camsi', 'CSS0037153' => 'camsi', 'CSS0039256' => 'camsi', 'CSS0048392' => 'camsi', 'CSS0050458' => 'camsi', 'DCAR_004224' => 'dca', 'DCAR_006147' => 'dca', 'DCAR_006465' => 'dca', 'DCAR_008159' => 'dca', 'DCAR_012164' => 'dca', 'DCAR_019764' => 'dca', 'Dinv05418' => 'din', 'Dinv10839' => 'din', 'Dinv12521' => 'din', 'Dinv13900' => 'din', 'Dinv29426' => 'din', 'Duzib150G0263' => 'dzi', 'Duzib168G1178' => 'dzi', 'Duzib168G1924' => 'dzi', 'Duzib170G0299' => 'dzi', 'Duzib170G0813' => 'dzi', 'Duzib235G1128' => 'dzi', 'Duzib248G1060' => 'dzi', 'ECA232G1910' => 'eca', 'ECA233G4621' => 'eca', 'ECA238G1216' => 'eca', 'ECA238G1784' => 'eca', 'ECA248G1242' => 'eca', 'EL10Ac8g20071' => 'bvu', 'EL10Ac9g21086' => 'bvu', 'EL10Ac9g22407' => 'bvu', 'EL10Ac9g22412' => 'bvu', 'Eucgr.A01119' => 'egr', 'Eucgr.E04043' => 'egr', 'Eucgr.J00428' => 'egr', 'Eucgr.J00958' => 'egr', 'FAN11G3091' => 'fan', 'FAN11G3651' => 'fan', 'FAN16G2566' => 'fan', 'FAN21G3155' => 'fan', 'FAN21G3400' => 'fan', 'FAN21G3543' => 'fan', 'FAN25G0234' => 'fan', 'FAN25G1422' => 'fan', 'FAN25G3392' => 'fan', 'FvH4_3g01940' => 'fve', 'FvH4_3g29870' => 'fve', 'FvH4_3g33680' => 'fve', 'Glyma.09G004200' => 'gma', 'Glyma.11G151288' => 'gma', 'Glyma.11G189100' => 'gma', 'Glyma.12G072500' => 'gma', 'Glyma.12G085500' => 'gma', 'Glyma.12G181800' => 'gma', 'Glyma.12G193000' => 'gma', 'Glyma.13G309300' => 'gma', 'Glyma.13G319000' => 'gma', 'Glyma.17G012600' => 'gma', 'Gohir.A06G148600' => 'ghi', 'Gohir.A07G115800' => 'ghi', 'Gohir.A08G003600' => 'ghi', 'Gohir.A09G093300' => 'ghi', 'Gohir.A09G105400' => 'ghi', 'Gohir.A09G105500' => 'ghi', 'Gohir.D06G154600' => 'ghi', 'Gohir.D07G120200' => 'ghi', 'Gohir.D08G013900' => 'ghi', 'Gohir.D09G093100' => 'ghi', 'Gohir.D09G102200' => 'ghi', 'Gohir.D09G102300' => 'ghi', 'Gorai.001G129400' => 'gra', 'Gorai.004G008200' => 'gra', 'Gorai.006G109800' => 'gra', 'Gorai.006G119500' => 'gra', 'Gorai.006G121300' => 'gra', 'Gorai.010G180700' => 'gra', 'GSVIVG01012716001' => 'vvi', 'GSVIVG01025118001' => 'vvi', 'GSVIVG01030439001' => 'vvi', 'GSVIVG01031397001' => 'vvi', 'HanXRQChr01g0004201' => 'han', 'HanXRQChr02g0054941' => 'han', 'HanXRQChr05g0141811' => 'han', 'HanXRQChr07g0197751' => 'han', 'HanXRQChr11g0346691' => 'han', 'HanXRQChr13g0396971' => 'han', 'HanXRQChr14g0432951' => 'han', 'HanXRQChr14g0452001' => 'han', 'HanXRQChr15g0496681' => 'han', 'HanXRQChr17g0557491' => 'han', 'HanXRQChr17g0557501' => 'han', 'Haze_06809' => 'cav', 'Haze_12852' => 'cav', 'Haze_15850' => 'cav', 'Haze_23446' => 'cav', 'Haze_23942' => 'cav', 'Haze_23943' => 'cav', 'Hma1.2p1_0091F.1_g046450' => 'hma', 'Hma1.2p1_0128F.1_g059910' => 'hma', 'Hma1.2p1_0249F.1_g102260' => 'hma', 'Hma1.2p1_0453F.1_g156190' => 'hma', 'Hma1.2p1_0695F.1_g204380' => 'hma', 'Hma1.2p1_0749F.1_g212650' => 'hma', 'Hma1.2p1_2156F.1_g315420' => 'hma', 'Hma1.2p1_2686F.1_g326940' => 'hma', 'HPP92_006428' => 'vpl', 'HPP92_012069' => 'vpl', 'HPP92_014129' => 'vpl', 'HPP92_014133' => 'vpl', 'HPP92_017315' => 'vpl', 'HPP92_026445' => 'vpl', 'HPP92_026446' => 'vpl', 'Hund00774' => 'sun', 'Hund07682' => 'sun', 'Hund21413' => 'sun', 'Hund23462' => 'sun', 'Hund23463' => 'sun', 'Lalb_Chr03g0027911' => 'lal', 'Lalb_Chr13g0304271' => 'lal', 'Lalb_Chr19g0137471' => 'lal', 'Lalb_Chr22g0350651' => 'lal', 'Lalb_Chr24g0395151' => 'lal', 'Lj1A1231T40' => 'lonja', 'Lj1A221T48' => 'lonja', 'Lj1C924T12' => 'lonja', 'Lj2C993G6' => 'lonja', 'Lj3g0005790' => 'lja', 'Lj3g0015432' => 'lja', 'Lj3g0017722' => 'lja', 'Lj3g0018497' => 'lja', 'Lj4g0025071' => 'lja', 'Lsat_1_v5_gn_1_129680' => 'lsa', 'Lsat_1_v5_gn_2_25321' => 'lsa', 'Lsat_1_v5_gn_2_95461' => 'lsa', 'Lsat_1_v5_gn_4_159620' => 'lsa', 'Lsat_1_v5_gn_6_41301' => 'lsa', 'Lsat_1_v5_gn_6_74660' => 'lsa', 'Lsat_1_v5_gn_7_11520' => 'lsa', 'Lsat_1_v5_gn_9_67680' => 'lsa', 'Manes.04G008300' => 'mes', 'Manes.04G008400' => 'mes', 'Manes.04G026500' => 'mes', 'Manes.10G135300' => 'mes', 'Manes.11G157300' => 'mes', 'Manes.12G074000' => 'mes', 'Manes.16G006200' => 'mes', 'Manes.17G026400' => 'mes', 'Mapoly0024s0086' => 'mpo', 'Mapoly0024s0087' => 'mpo', 'Mapoly0071s0057' => 'mpo', 'Mapoly0204s0012' => 'mpo', 'MBI04_g37681_MAGBIO' => 'mbi', 'MBI05_g17779_MAGBIO' => 'mbi', 'MBI12_g31184_MAGBIO' => 'mbi', 'MBI17_g11083_MAGBIO' => 'mbi', 'MBI18_g03883_MAGBIO' => 'mbi', 'MBI18_g28940_MAGBIO' => 'mbi', 'MCO01G690' => 'mco', 'MD03G1109900' => 'mdo', 'MD03G1134800' => 'mdo', 'MD05G1348000' => 'mdo', 'MD10G1322400' => 'mdo', 'MD11G1123300' => 'mdo', 'MD11G1157600' => 'mdo', 'Medtr2g084875' => 'mtr', 'Medtr2g088130' => 'mtr', 'Medtr4g055310' => 'mtr', 'Medtr4g061070' => 'mtr', 'Medtr4g132250' => 'mtr', 'MELO3C004795.2' => 'cme', 'MELO3C004797.2' => 'cme', 'MELO3C007396.2' => 'cme', 'MELO3C019277.2' => 'cme', 'MELO3C021449.2' => 'cme', 'MELO3C025736.2' => 'cme', 'Migut.D02175' => 'egut', 'Migut.H01573' => 'egut', 'Migut.M01327' => 'egut', 'Migut.N02513' => 'egut', 'MSTRG.14638' => 'ama', 'MSTRG.18632' => 'ama', 'MSTRG.7203' => 'ama', 'Nitab4.5_0000533g0140' => 'nta', 'Nitab4.5_0000888g0150' => 'nta', 'Nitab4.5_0001453g0040' => 'nta', 'Nitab4.5_0002827g0090' => 'nta', 'Nitab4.5_0003082g0040' => 'nta', 'Nitab4.5_0007799g0040' => 'nta', 'Nitab4.5_0008983g0010' => 'nta', 'Nitab4.5_0009017g0020' => 'nta', 'Nn1g02132' => 'nnu', 'Nn1g03492' => 'nnu', 'Nn1g03493' => 'nnu', 'Nn1g03494' => 'nnu', 'Nn1g07164' => 'nnu', 'Nn1g07291' => 'nnu', 'Nn2g10655' => 'nnu', 'Nn2g11652' => 'nnu', 'Nn2g14008' => 'nnu', 'Nn3g17476' => 'nnu', 'Nn3g17477' => 'nnu', 'Nn4g22370' => 'nnu', 'Nn4g25255' => 'nnu', 'Nn5g27755' => 'nnu', 'Nn6g34260' => 'nnu', 'Nn6g35041' => 'nnu', 'Oeu005924.1' => 'oeu', 'Oeu008383.1' => 'oeu', 'Oeu014928.1' => 'oeu', 'Oeu019889.1' => 'oeu', 'Oeu022271.1' => 'oeu', 'Oeu025271.1' => 'oeu', 'Oeu036302.1' => 'oeu', 'Oeu044100.1' => 'oeu', 'Os01g0528300' => 'osa', 'Os03g0286200' => 'osa', 'Os04g0406600' => 'osa', 'Os07g0512000' => 'osa', 'Os07g0694600' => 'osa', 'Os08g0411000' => 'osa', 'Os09g0565700' => 'osa', 'Os09g0566050' => 'osa', 'Os10g0523700' => 'osa', 'Peaxi162Scf00002g00514' => 'pax', 'Peaxi162Scf00047g01817' => 'pax', 'Peaxi162Scf00114g00001' => 'pax', 'Peaxi162Scf00147g00613' => 'pax', 'Peaxi162Scf00389g00425' => 'pax', 'PGR042G1139' => 'pgr', 'PGR042G3273' => 'pgr', 'PGR102G2180' => 'pgr', 'PGR119G0234' => 'pgr', 'PGR119G0668' => 'pgr', 'PGSC0003DMG400007122' => 'stu', 'PGSC0003DMG400016478' => 'stu', 'PGSC0003DMG400025374' => 'stu', 'PGSC0003DMG400026536' => 'stu', 'Phvul.003G079600' => 'pvu', 'Phvul.005G115600' => 'pvu', 'Phvul.005G127100' => 'pvu', 'Phvul.006G149500' => 'pvu', 'Phvul.006G149600' => 'pvu', 'Phvul.011G071800' => 'pvu', 'Phvul.011G090400' => 'pvu', 'Potri.004G013400' => 'ptr', 'Potri.004G188100' => 'ptr', 'Potri.008G195500' => 'ptr', 'Potri.009G148800' => 'ptr', 'Potri.011G004700' => 'ptr', 'Pp3c17_22810' => 'ppa', 'Pp3c18_4480' => 'ppa', 'Pp3c19_13030' => 'ppa', 'Pp3c1_33620' => 'ppa', 'Pp3c2_9380' => 'ppa', 'PRCOL_00001023' => 'pco', 'Prupe.3G216300' => 'ppe', 'Prupe.4G019500' => 'ppe', 'Prupe.6G092500' => 'ppe', 'Prupe.6G119200' => 'ppe', 'Psat0s1945g0080' => 'psa', 'Psat0s4167g0040' => 'psa', 'Psat1g185800' => 'psa', 'Psat4g006440' => 'psa', 'Psat4g006480' => 'psa', 'Psat4g168120' => 'psa', 'Psat5g255680' => 'psa', 'Psat5g261760' => 'psa', 'Psat7g222120' => 'psa', 'PSO063G7252' => 'pso', 'PSO170G4778' => 'pso', 'PSO210G2249' => 'pso', 'PSO339G2411' => 'pso', 'PSO339G2457' => 'pso', 'PSO339G2854' => 'pso', 'PSO339G4288' => 'pso', 'PSO339G4615' => 'pso', 'PSO384G2796' => 'pso', 'PSO384G2940' => 'pso', 'PSO384G4227' => 'pso', 'PSO478G1425' => 'pso', 'PSO541G3863' => 'pso', 'PSO675G0507' => 'pso', 'PSO782G0338' => 'pso', 'PSO832G0644' => 'pso', 'QL01p013664' => 'qlo', 'QL01p036598' => 'qlo', 'QL05p072984' => 'qlo', 'QL08p005768' => 'qlo', 'QL08p032743' => 'qlo', 'QL93p0073_0439' => 'qlo', 'QL93p0073_0444' => 'qlo', 'RcHm_v2.0_Chr5g0002851' => 'rch', 'RcHm_v2.0_Chr5g0055201' => 'rch', 'RcHm_v2.0_Chr5g0061191' => 'rch', 'RcHm_v2.0_Chr7g0203231' => 'rch', 'Rhsim01G0208100' => 'rsi', 'Rhsim01G0208200' => 'rsi', 'Rhsim02G0106500' => 'rsi', 'Rhsim03G0107900' => 'rsi', 'Rhsim06G0163400' => 'rsi', 'Rhsim13G0105200' => 'rsi', 'Sabra04G0006300' => 'sbr', 'Sabra04G0127000' => 'sbr', 'Sabra08G0148700' => 'sbr', 'Sabra09G0117400' => 'sbr', 'SalBow1G3326' => 'sbo', 'SalBow3G3228' => 'sbo', 'SalBow6G1634' => 'sbo', 'SalBow6G3603' => 'sbo', 'SalBow6G5266' => 'sbo', 'SalBow7G2265' => 'sbo', 'SalBow8G0850' => 'sbo', 'SalBow8G2592' => 'sbo', 'Sc05g0009240' => 'sci', 'Sc12g0002300' => 'sci', 'Sc21g0000100' => 'sci', 'Sc21g0004720' => 'sci', 'Sed0002949' => 'sed', 'Sed0004114' => 'sed', 'Sed0004306' => 'sed', 'Sed0006172' => 'sed', 'Sed0008413' => 'sed', 'Sed0013809' => 'sed', 'Sed0019556' => 'sed', 'SEGI_03570' => 'sgi', 'SEGI_07859' => 'sgi', 'SEGI_15042' => 'sgi', 'SEGI_16263' => 'sgi', 'SEGI_16552' => 'sgi', 'SEGI_24331' => 'sgi', 'SEGI_27316' => 'sgi', 'SEGI_29521' => 'sgi', 'SEGI_41342' => 'sgi', 'SGA_v2.0_scaffold27G11617' => 'sas', 'SGA_v2.0_scaffold316G48428' => 'sas', 'SGA_v2.0_scaffold49G18261' => 'sas', 'SGA_v2.0_scaffold7G03831' => 'sas', 'SGA_v2.0_scaffold93G28359' => 'sas', 'SHI02210' => 'shi', 'SHI06028' => 'shi', 'SHI06321' => 'shi', 'SMO111G0012' => 'smo', 'SMO228G0080' => 'smo', 'SMO356G0756' => 'smo', 'Solyc02g080620.3' => 'sly', 'Solyc06g074530.1' => 'sly', 'Solyc11g066890.1' => 'sly', 'Solyc11g072520.3' => 'sly', 'Sopen02g025330' => 'spe', 'Sopen06g031000' => 'spe', 'Sopen09g008240' => 'spe', 'Sopen09g025210' => 'spe', 'Sopen11g026600' => 'spe', 'Sopen11g030170' => 'spe', 'Sp1g10420' => 'spa', 'Sp3g06570' => 'spa', 'Sp4g10660' => 'spa', 'Sp5g16460' => 'spa', 'Sp6g22710' => 'spa', 'TAR365G0112' => 'tar', 'TAR369G0717' => 'tar', 'TAR374G0976' => 'tar', 'TAR623G1128' => 'tar', 'TAR626G1937' => 'tar', 'TAR627G0123' => 'tar', 'TAR628G0305' => 'tar', 'TAR636G1176' => 'tar', 'TAR636G2442' => 'tar', 'THA.LOC104800556' => 'tha', 'THA.LOC104809501' => 'tha', 'THA.LOC104815126' => 'tha', 'THA.LOC104815732' => 'tha', 'THA.LOC104823528' => 'tha', 'Thecc.02G365600' => 'tca', 'Thecc.06G222300' => 'tca', 'Thecc.09G261800' => 'tca', 'Thecc.09G291400' => 'tca', 'Thhalv10003028m.g' => 'esa', 'Thhalv10007886m.g' => 'esa', 'Thhalv10016085m.g' => 'esa', 'Thhalv10016681m.g' => 'esa', 'Thhalv10020951m.g' => 'esa', 'TPR.G15598' => 'tpr', 'TPR.G29305' => 'tpr', 'TPR.G32395' => 'tpr', 'TPR.G36998' => 'tpr', 'TPR.G4227' => 'tpr', 'TWI18G1433' => 'twi', 'TWI31G0755' => 'twi', 'TWI38G0912' => 'twi', 'TWI75G1097' => 'twi', 'TWI75G1619' => 'twi', 'TWI79G1336' => 'twi', 'unitig_0.g943' => 'ugi', 'unitig_0.g944' => 'ugi', 'unitig_22.g6646' => 'ugi', 'unitig_37.g12681' => 'ugi', 'unitig_8.g3290' => 'ugi', 'vmacro03278' => 'vma', 'vmacro12197' => 'vma', 'vmacro14478' => 'vma', 'vmacro15787' => 'vma', 'vmacro15789' => 'vma', 'vmacro15790' => 'vma', 'vmacro15806' => 'vma', 'vmacro22907' => 'vma', 'vmacro22908' => 'vma', 'vmacro22909' => 'vma', 'vmacro23108' => 'vma', 'VMungo0540G0540' => 'vmu', 'VMungo0540G2468' => 'vmu', 'VMungo1080G0390' => 'vmu', 'VMungo1080G1165' => 'vmu', 'VMungo1127G0170' => 'vmu', 'VMungo1127G2099' => 'vmu', 'VMungo1215G3013' => 'vmu', 'Zm00001eb013110' => 'zma', 'Zm00001eb084260' => 'zma', 'Zm00001eb096110' => 'zma', 'Zm00001eb217510' => 'zma', 'Zm00001eb322550' => 'zma', 'Zm00001eb390770' => 'zma', 'Zm00001eb397170' => 'zma', 'Zm00001eb404610' => 'zma', 'Zm00001eb421790' => 'zma' ) $gf_id = 'HOM05D000911' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000911' ) $data_identifier = 'HOM05D000911' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 16, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 5, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 6, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 8, 'nnu' => (int) 16, 'oeu' => (int) 8, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 5, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 16, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421790' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000911', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27780' => 'bna', 'A03p35380' => 'bna', 'A04p21160' => 'bna', 'A05p40570' => 'bna', 'A06p26900' => 'bna', 'A08p33230' => 'bna', 'A09p65960' => 'bna', 'A10p18290' => 'bna', 'Aa31LG1G12990' => 'aar', 'Aa31LG1G2980' => 'aar', 'Aa31LG4G14320' => 'aar', 'Aa31LG7G11800' => 'aar', 'Aa31sc36G50' => 'aar', 'Aa31sc36G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3721' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5459' => 'aag', 'Actinidia03028' => 'ach', 'Actinidia03753' => 'ach', 'Actinidia04187' => 'ach', 'Actinidia05509' => 'ach', 'Actinidia24180' => 'ach', 'Actinidia26906' => 'ach', 'Actinidia37097' => 'ach', 'Actinidia38249' => 'ach', 'Ah.01g003470' => 'amhyb', 'Ah.01g004580' => 'amhyb', 'Ah.01g014850' => 'amhyb', 'Ah.01g016830' => 'amhyb', 'Ah.14g088000' => 'amhyb', 'AL1G22980' => 'aly', 'AL3G18990' => 'aly', 'AL4G22440' => 'aly', 'AL4G33180' => 'aly', 'AL5G22920' => 'aly', 'AL6G33660' => 'aly', 'AL8G20720' => 'aly', 'Aqoxy1G00935' => 'aox', 'Aqoxy1G02094' => 'aox', 'Aqoxy2G01239' => 'aox', 'Aqoxy4G01870' => 'aox', 'Aqoxy7G00450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.36ZVTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71EM27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5D6C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH3WRE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3NCM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RIM768' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YB5YRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z36GDV' => 'arhy', 'AT1G08250' => 'ath', 'AT1G11790' => 'ath', 'AT2G27820' => 'ath', 'AT3G07630' => 'ath', 'AT3G44720' => 'ath', 'AT5G22630' => 'ath', 'ATR0693G304' => 'atr', 'ATR0794G109' => 'atr', 'ATR0820G120' => 'atr', 'ATR1159G064' => 'atr', 'Atru.chr10.2239' => 'acertr', 'Atru.chr3.3371' => 'acertr', 'Atru.chr6.3202' => 'acertr', 'AUR62006499' => 'cqu', 'AUR62012718' => 'cqu', 'AUR62021938' => 'cqu', 'AUR62023932' => 'cqu', 'AUR62025034' => 'cqu', 'AUR62025035' => 'cqu', 'AUR62038307' => 'cqu', 'AUR62043466' => 'cqu', 'BcaB02g10748' => 'bca', 'BcaB03g13231' => 'bca', 'BcaB03g14689' => 'bca', 'BcaB05g22716' => 'bca', 'BcaB06g28172' => 'bca', 'BcaB08g36413' => 'bca', 'BcaC01g02186' => 'bca', 'BcaC01g04272' => 'bca', 'BcaC02g08080' => 'bca', 'BcaC02g08227' => 'bca', 'BcaC03g13901' => 'bca', 'BcaC04g19593' => 'bca', 'BcaC04g20874' => 'bca', 'BcaC05g29557' => 'bca', 'BcaC06g35505' => 'bca', 'BcaC07g41954' => 'bca', 'BcaC07g41955' => 'bca', 'BcaC07g41956' => 'bca', 'BcaC07g42519' => 'bca', 'BcaC07g42520' => 'bca', 'BcaC07g42523' => 'bca', 'BcaC07g42524' => 'bca', 'BcaC07g42525' => 'bca', 'BcaC08g47480' => 'bca', 'BcaC08g47481' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00530' => 'bna', 'BolC2t07178H' => 'bol', 'BolC3t16567H' => 'bol', 'BolC4t27234H' => 'bol', 'BolC5t29728H' => 'bol', 'BolC5t34622H' => 'bol', 'BolC6t40321H' => 'bol', 'BolC7t42028H' => 'bol', 'BolC8t49125H' => 'bol', 'BolC8t52538H' => 'bol', 'BolC8t52539H' => 'bol', 'BolC9t56681H' => 'bol', 'BolC9t58266H' => 'bol', 'BolSC21t60294H' => 'bol', 'BraA02t05670Z' => 'bra', 'BraA03t12716Z' => 'bra', 'BraA04t17685Z' => 'bra', 'BraA05t22788Z' => 'bra', 'BraA06t24032Z' => 'bra', 'BraA06t25625Z' => 'bra', 'BraA07t27930Z' => 'bra', 'BraA08t35242Z' => 'bra', 'BraA09t38609Z' => 'bra', 'BraA10t43905Z' => 'bra', 'C02p11060' => 'bna', 'C03p42990' => 'bna', 'C03p67310' => 'bna', 'C04p56990' => 'bna', 'C04p58660' => 'bna', 'C05p09890' => 'bna', 'C05p59680' => 'bna', 'C06p19830' => 'bna', 'C06p53040' => 'bna', 'C07p15230' => 'bna', 'C08p50070' => 'bna', 'C08p50090' => 'bna', 'C09p38330' => 'bna', 'C09p53940' => 'bna', 'CAN.G1014.1' => 'can', 'CAN.G644.30' => 'can', 'CAN.G84.47' => 'can', 'CAN.G919.8' => 'can', 'CANSAT54G0113' => 'cansat', 'CANSAT54G1286' => 'cansat', 'CANSAT64G1020' => 'cansat', 'CARHR008080' => 'chi', 'CARHR008090' => 'chi', 'CARHR012130' => 'chi', 'CARHR038390' => 'chi', 'CARHR082330' => 'chi', 'CARHR120520' => 'chi', 'CARHR151470' => 'chi', 'CARHR190950' => 'chi', 'Carub.0001s0760' => 'cru', 'Carub.0001s1146' => 'cru', 'Carub.0003s0721' => 'cru', 'Carub.0004s0858' => 'cru', 'Carub.0005s1040' => 'cru', 'Carub.0006s2035' => 'cru', 'Carub.0015s0005' => 'cru', 'Ca_01607_v3' => 'car', 'Ca_01677_v3' => 'car', 'Ca_06087_v3' => 'car', 'Ca_19238_v3' => 'car', 'Ca_19373_v3' => 'car', 'Ca_21079_v3' => 'car', 'CBR_g54016' => 'cbr', 'CBR_g54018' => 'cbr', 'CBR_g54020' => 'cbr', 'Cc01_g09780' => 'ccan', 'Cc01_g11680' => 'ccan', 'Cc02_g15610' => 'ccan', 'Cc05_g04350' => 'ccan', 'Cc09_g01580' => 'ccan', 'CDE01G0795' => 'cde', 'CDE02G2024' => 'cde', 'CDE02G2260' => 'cde', 'CDE02G4561' => 'cde', 'CDE05G2733' => 'cde', 'CDE05G3422' => 'cde', 'CDE06G2003' => 'cde', 'CDE08G0576' => 'cde', 'CDE09G0048' => 'cde', 'CDE11G0805' => 'cde', 'Cfa003644' => 'cfa', 'Cfa006290' => 'cfa', 'Cfa010080' => 'cfa', 'Cfa011376' => 'cfa', 'Cfa011576' => 'cfa', 'Cfa011577' => 'cfa', 'Cfa014389' => 'cfa', 'Ciclev10006044m.g' => 'ccl', 'Ciclev10006954m.g' => 'ccl', 'Ciclev10015131m.g' => 'ccl', 'Ciclev10015580m.g' => 'ccl', 'Ciclev10028359m.g' => 'ccl', 'Ciclev10028573m.g' => 'ccl', 'CiPaw.03G159300' => 'cil', 'CiPaw.04G115100' => 'cil', 'CiPaw.09G092800' => 'cil', 'CiPaw.10G071800' => 'cil', 'CiPaw.13G105800' => 'cil', 'CiPaw.13G141000' => 'cil', 'CiPaw.14G103400' => 'cil', 'ClCG01G012700' => 'cla', 'ClCG01G012720' => 'cla', 'ClCG01G021920' => 'cla', 'ClCG02G008870' => 'cla', 'ClCG02G020840' => 'cla', 'ClCG02G021930' => 'cla', 'COL.COLO4_19302' => 'col', 'COL.COLO4_25262' => 'col', 'COL.COLO4_31788' => 'col', 'Cpa.g.c34684' => 'cpa', 'Cpa.g.c36520.1' => 'cpa', 'Cpa.g.c45626' => 'cpa', 'Cpa.g.sc121.17' => 'cpa', 'Cpa.g.sc13.22' => 'cpa', 'Cpa.g.sc87.88' => 'cpa', 'Cre06.g261800' => 'cre', 'CsaV3_1G014500' => 'csa', 'CsaV3_1G014510' => 'csa', 'CsaV3_2G034880' => 'csa', 'CsaV3_6G014760' => 'csa', 'CsaV3_6G021500' => 'csa', 'CsaV3_6G048980' => 'csa', 'CSS0002511' => 'camsi', 'CSS0007556' => 'camsi', 'CSS0008532' => 'camsi', 'CSS0009709' => 'camsi', 'CSS0010486' => 'camsi', 'CSS0016768' => 'camsi', 'CSS0023512' => 'camsi', 'CSS0025341' => 'camsi', 'CSS0027999' => 'camsi', 'CSS0028944' => 'camsi', 'CSS0032292' => 'camsi', 'CSS0032464' => 'camsi', 'CSS0037153' => 'camsi', 'CSS0039256' => 'camsi', 'CSS0048392' => 'camsi', 'CSS0050458' => 'camsi', 'DCAR_004224' => 'dca', 'DCAR_006147' => 'dca', 'DCAR_006465' => 'dca', 'DCAR_008159' => 'dca', 'DCAR_012164' => 'dca', 'DCAR_019764' => 'dca', 'Dinv05418' => 'din', 'Dinv10839' => 'din', 'Dinv12521' => 'din', 'Dinv13900' => 'din', 'Dinv29426' => 'din', 'Duzib150G0263' => 'dzi', 'Duzib168G1178' => 'dzi', 'Duzib168G1924' => 'dzi', 'Duzib170G0299' => 'dzi', 'Duzib170G0813' => 'dzi', 'Duzib235G1128' => 'dzi', 'Duzib248G1060' => 'dzi', 'ECA232G1910' => 'eca', 'ECA233G4621' => 'eca', 'ECA238G1216' => 'eca', 'ECA238G1784' => 'eca', 'ECA248G1242' => 'eca', 'EL10Ac8g20071' => 'bvu', 'EL10Ac9g21086' => 'bvu', 'EL10Ac9g22407' => 'bvu', 'EL10Ac9g22412' => 'bvu', 'Eucgr.A01119' => 'egr', 'Eucgr.E04043' => 'egr', 'Eucgr.J00428' => 'egr', 'Eucgr.J00958' => 'egr', 'FAN11G3091' => 'fan', 'FAN11G3651' => 'fan', 'FAN16G2566' => 'fan', 'FAN21G3155' => 'fan', 'FAN21G3400' => 'fan', 'FAN21G3543' => 'fan', 'FAN25G0234' => 'fan', 'FAN25G1422' => 'fan', 'FAN25G3392' => 'fan', 'FvH4_3g01940' => 'fve', 'FvH4_3g29870' => 'fve', 'FvH4_3g33680' => 'fve', 'Glyma.09G004200' => 'gma', 'Glyma.11G151288' => 'gma', 'Glyma.11G189100' => 'gma', 'Glyma.12G072500' => 'gma', 'Glyma.12G085500' => 'gma', 'Glyma.12G181800' => 'gma', 'Glyma.12G193000' => 'gma', 'Glyma.13G309300' => 'gma', 'Glyma.13G319000' => 'gma', 'Glyma.17G012600' => 'gma', 'Gohir.A06G148600' => 'ghi', 'Gohir.A07G115800' => 'ghi', 'Gohir.A08G003600' => 'ghi', 'Gohir.A09G093300' => 'ghi', 'Gohir.A09G105400' => 'ghi', 'Gohir.A09G105500' => 'ghi', 'Gohir.D06G154600' => 'ghi', 'Gohir.D07G120200' => 'ghi', 'Gohir.D08G013900' => 'ghi', 'Gohir.D09G093100' => 'ghi', 'Gohir.D09G102200' => 'ghi', 'Gohir.D09G102300' => 'ghi', 'Gorai.001G129400' => 'gra', 'Gorai.004G008200' => 'gra', 'Gorai.006G109800' => 'gra', 'Gorai.006G119500' => 'gra', 'Gorai.006G121300' => 'gra', 'Gorai.010G180700' => 'gra', 'GSVIVG01012716001' => 'vvi', 'GSVIVG01025118001' => 'vvi', 'GSVIVG01030439001' => 'vvi', 'GSVIVG01031397001' => 'vvi', 'HanXRQChr01g0004201' => 'han', 'HanXRQChr02g0054941' => 'han', 'HanXRQChr05g0141811' => 'han', 'HanXRQChr07g0197751' => 'han', 'HanXRQChr11g0346691' => 'han', 'HanXRQChr13g0396971' => 'han', 'HanXRQChr14g0432951' => 'han', 'HanXRQChr14g0452001' => 'han', 'HanXRQChr15g0496681' => 'han', 'HanXRQChr17g0557491' => 'han', 'HanXRQChr17g0557501' => 'han', 'Haze_06809' => 'cav', 'Haze_12852' => 'cav', 'Haze_15850' => 'cav', 'Haze_23446' => 'cav', 'Haze_23942' => 'cav', 'Haze_23943' => 'cav', 'Hma1.2p1_0091F.1_g046450' => 'hma', 'Hma1.2p1_0128F.1_g059910' => 'hma', 'Hma1.2p1_0249F.1_g102260' => 'hma', 'Hma1.2p1_0453F.1_g156190' => 'hma', 'Hma1.2p1_0695F.1_g204380' => 'hma', 'Hma1.2p1_0749F.1_g212650' => 'hma', 'Hma1.2p1_2156F.1_g315420' => 'hma', 'Hma1.2p1_2686F.1_g326940' => 'hma', 'HPP92_006428' => 'vpl', 'HPP92_012069' => 'vpl', 'HPP92_014129' => 'vpl', 'HPP92_014133' => 'vpl', 'HPP92_017315' => 'vpl', 'HPP92_026445' => 'vpl', 'HPP92_026446' => 'vpl', 'Hund00774' => 'sun', 'Hund07682' => 'sun', 'Hund21413' => 'sun', 'Hund23462' => 'sun', 'Hund23463' => 'sun', 'Lalb_Chr03g0027911' => 'lal', 'Lalb_Chr13g0304271' => 'lal', 'Lalb_Chr19g0137471' => 'lal', 'Lalb_Chr22g0350651' => 'lal', 'Lalb_Chr24g0395151' => 'lal', 'Lj1A1231T40' => 'lonja', 'Lj1A221T48' => 'lonja', 'Lj1C924T12' => 'lonja', 'Lj2C993G6' => 'lonja', 'Lj3g0005790' => 'lja', 'Lj3g0015432' => 'lja', 'Lj3g0017722' => 'lja', 'Lj3g0018497' => 'lja', 'Lj4g0025071' => 'lja', 'Lsat_1_v5_gn_1_129680' => 'lsa', 'Lsat_1_v5_gn_2_25321' => 'lsa', 'Lsat_1_v5_gn_2_95461' => 'lsa', 'Lsat_1_v5_gn_4_159620' => 'lsa', 'Lsat_1_v5_gn_6_41301' => 'lsa', 'Lsat_1_v5_gn_6_74660' => 'lsa', 'Lsat_1_v5_gn_7_11520' => 'lsa', 'Lsat_1_v5_gn_9_67680' => 'lsa', 'Manes.04G008300' => 'mes', 'Manes.04G008400' => 'mes', 'Manes.04G026500' => 'mes', 'Manes.10G135300' => 'mes', 'Manes.11G157300' => 'mes', 'Manes.12G074000' => 'mes', 'Manes.16G006200' => 'mes', 'Manes.17G026400' => 'mes', 'Mapoly0024s0086' => 'mpo', 'Mapoly0024s0087' => 'mpo', 'Mapoly0071s0057' => 'mpo', 'Mapoly0204s0012' => 'mpo', 'MBI04_g37681_MAGBIO' => 'mbi', 'MBI05_g17779_MAGBIO' => 'mbi', 'MBI12_g31184_MAGBIO' => 'mbi', 'MBI17_g11083_MAGBIO' => 'mbi', 'MBI18_g03883_MAGBIO' => 'mbi', 'MBI18_g28940_MAGBIO' => 'mbi', 'MCO01G690' => 'mco', 'MD03G1109900' => 'mdo', 'MD03G1134800' => 'mdo', 'MD05G1348000' => 'mdo', 'MD10G1322400' => 'mdo', 'MD11G1123300' => 'mdo', 'MD11G1157600' => 'mdo', 'Medtr2g084875' => 'mtr', 'Medtr2g088130' => 'mtr', 'Medtr4g055310' => 'mtr', 'Medtr4g061070' => 'mtr', 'Medtr4g132250' => 'mtr', 'MELO3C004795.2' => 'cme', 'MELO3C004797.2' => 'cme', 'MELO3C007396.2' => 'cme', 'MELO3C019277.2' => 'cme', 'MELO3C021449.2' => 'cme', 'MELO3C025736.2' => 'cme', 'Migut.D02175' => 'egut', 'Migut.H01573' => 'egut', 'Migut.M01327' => 'egut', 'Migut.N02513' => 'egut', 'MSTRG.14638' => 'ama', 'MSTRG.18632' => 'ama', 'MSTRG.7203' => 'ama', 'Nitab4.5_0000533g0140' => 'nta', 'Nitab4.5_0000888g0150' => 'nta', 'Nitab4.5_0001453g0040' => 'nta', 'Nitab4.5_0002827g0090' => 'nta', 'Nitab4.5_0003082g0040' => 'nta', 'Nitab4.5_0007799g0040' => 'nta', 'Nitab4.5_0008983g0010' => 'nta', 'Nitab4.5_0009017g0020' => 'nta', 'Nn1g02132' => 'nnu', 'Nn1g03492' => 'nnu', 'Nn1g03493' => 'nnu', 'Nn1g03494' => 'nnu', 'Nn1g07164' => 'nnu', 'Nn1g07291' => 'nnu', 'Nn2g10655' => 'nnu', 'Nn2g11652' => 'nnu', 'Nn2g14008' => 'nnu', 'Nn3g17476' => 'nnu', 'Nn3g17477' => 'nnu', 'Nn4g22370' => 'nnu', 'Nn4g25255' => 'nnu', 'Nn5g27755' => 'nnu', 'Nn6g34260' => 'nnu', 'Nn6g35041' => 'nnu', 'Oeu005924.1' => 'oeu', 'Oeu008383.1' => 'oeu', 'Oeu014928.1' => 'oeu', 'Oeu019889.1' => 'oeu', 'Oeu022271.1' => 'oeu', 'Oeu025271.1' => 'oeu', 'Oeu036302.1' => 'oeu', 'Oeu044100.1' => 'oeu', 'Os01g0528300' => 'osa', 'Os03g0286200' => 'osa', 'Os04g0406600' => 'osa', 'Os07g0512000' => 'osa', 'Os07g0694600' => 'osa', 'Os08g0411000' => 'osa', 'Os09g0565700' => 'osa', 'Os09g0566050' => 'osa', 'Os10g0523700' => 'osa', 'Peaxi162Scf00002g00514' => 'pax', 'Peaxi162Scf00047g01817' => 'pax', 'Peaxi162Scf00114g00001' => 'pax', 'Peaxi162Scf00147g00613' => 'pax', 'Peaxi162Scf00389g00425' => 'pax', 'PGR042G1139' => 'pgr', 'PGR042G3273' => 'pgr', 'PGR102G2180' => 'pgr', 'PGR119G0234' => 'pgr', 'PGR119G0668' => 'pgr', 'PGSC0003DMG400007122' => 'stu', 'PGSC0003DMG400016478' => 'stu', 'PGSC0003DMG400025374' => 'stu', 'PGSC0003DMG400026536' => 'stu', 'Phvul.003G079600' => 'pvu', 'Phvul.005G115600' => 'pvu', 'Phvul.005G127100' => 'pvu', 'Phvul.006G149500' => 'pvu', 'Phvul.006G149600' => 'pvu', 'Phvul.011G071800' => 'pvu', 'Phvul.011G090400' => 'pvu', 'Potri.004G013400' => 'ptr', 'Potri.004G188100' => 'ptr', 'Potri.008G195500' => 'ptr', 'Potri.009G148800' => 'ptr', 'Potri.011G004700' => 'ptr', 'Pp3c17_22810' => 'ppa', 'Pp3c18_4480' => 'ppa', 'Pp3c19_13030' => 'ppa', 'Pp3c1_33620' => 'ppa', 'Pp3c2_9380' => 'ppa', 'PRCOL_00001023' => 'pco', 'Prupe.3G216300' => 'ppe', 'Prupe.4G019500' => 'ppe', 'Prupe.6G092500' => 'ppe', 'Prupe.6G119200' => 'ppe', 'Psat0s1945g0080' => 'psa', 'Psat0s4167g0040' => 'psa', 'Psat1g185800' => 'psa', 'Psat4g006440' => 'psa', 'Psat4g006480' => 'psa', 'Psat4g168120' => 'psa', 'Psat5g255680' => 'psa', 'Psat5g261760' => 'psa', 'Psat7g222120' => 'psa', 'PSO063G7252' => 'pso', 'PSO170G4778' => 'pso', 'PSO210G2249' => 'pso', 'PSO339G2411' => 'pso', 'PSO339G2457' => 'pso', 'PSO339G2854' => 'pso', 'PSO339G4288' => 'pso', 'PSO339G4615' => 'pso', 'PSO384G2796' => 'pso', 'PSO384G2940' => 'pso', 'PSO384G4227' => 'pso', 'PSO478G1425' => 'pso', 'PSO541G3863' => 'pso', 'PSO675G0507' => 'pso', 'PSO782G0338' => 'pso', 'PSO832G0644' => 'pso', 'QL01p013664' => 'qlo', 'QL01p036598' => 'qlo', 'QL05p072984' => 'qlo', 'QL08p005768' => 'qlo', 'QL08p032743' => 'qlo', 'QL93p0073_0439' => 'qlo', 'QL93p0073_0444' => 'qlo', 'RcHm_v2.0_Chr5g0002851' => 'rch', 'RcHm_v2.0_Chr5g0055201' => 'rch', 'RcHm_v2.0_Chr5g0061191' => 'rch', 'RcHm_v2.0_Chr7g0203231' => 'rch', 'Rhsim01G0208100' => 'rsi', 'Rhsim01G0208200' => 'rsi', 'Rhsim02G0106500' => 'rsi', 'Rhsim03G0107900' => 'rsi', 'Rhsim06G0163400' => 'rsi', 'Rhsim13G0105200' => 'rsi', 'Sabra04G0006300' => 'sbr', 'Sabra04G0127000' => 'sbr', 'Sabra08G0148700' => 'sbr', 'Sabra09G0117400' => 'sbr', 'SalBow1G3326' => 'sbo', 'SalBow3G3228' => 'sbo', 'SalBow6G1634' => 'sbo', 'SalBow6G3603' => 'sbo', 'SalBow6G5266' => 'sbo', 'SalBow7G2265' => 'sbo', 'SalBow8G0850' => 'sbo', 'SalBow8G2592' => 'sbo', 'Sc05g0009240' => 'sci', 'Sc12g0002300' => 'sci', 'Sc21g0000100' => 'sci', 'Sc21g0004720' => 'sci', 'Sed0002949' => 'sed', 'Sed0004114' => 'sed', 'Sed0004306' => 'sed', 'Sed0006172' => 'sed', 'Sed0008413' => 'sed', 'Sed0013809' => 'sed', 'Sed0019556' => 'sed', 'SEGI_03570' => 'sgi', 'SEGI_07859' => 'sgi', 'SEGI_15042' => 'sgi', 'SEGI_16263' => 'sgi', 'SEGI_16552' => 'sgi', 'SEGI_24331' => 'sgi', 'SEGI_27316' => 'sgi', 'SEGI_29521' => 'sgi', 'SEGI_41342' => 'sgi', 'SGA_v2.0_scaffold27G11617' => 'sas', 'SGA_v2.0_scaffold316G48428' => 'sas', 'SGA_v2.0_scaffold49G18261' => 'sas', 'SGA_v2.0_scaffold7G03831' => 'sas', 'SGA_v2.0_scaffold93G28359' => 'sas', 'SHI02210' => 'shi', 'SHI06028' => 'shi', 'SHI06321' => 'shi', 'SMO111G0012' => 'smo', 'SMO228G0080' => 'smo', 'SMO356G0756' => 'smo', 'Solyc02g080620.3' => 'sly', 'Solyc06g074530.1' => 'sly', 'Solyc11g066890.1' => 'sly', 'Solyc11g072520.3' => 'sly', 'Sopen02g025330' => 'spe', 'Sopen06g031000' => 'spe', 'Sopen09g008240' => 'spe', 'Sopen09g025210' => 'spe', 'Sopen11g026600' => 'spe', 'Sopen11g030170' => 'spe', 'Sp1g10420' => 'spa', 'Sp3g06570' => 'spa', 'Sp4g10660' => 'spa', 'Sp5g16460' => 'spa', 'Sp6g22710' => 'spa', 'TAR365G0112' => 'tar', 'TAR369G0717' => 'tar', 'TAR374G0976' => 'tar', 'TAR623G1128' => 'tar', 'TAR626G1937' => 'tar', 'TAR627G0123' => 'tar', 'TAR628G0305' => 'tar', 'TAR636G1176' => 'tar', 'TAR636G2442' => 'tar', 'THA.LOC104800556' => 'tha', 'THA.LOC104809501' => 'tha', 'THA.LOC104815126' => 'tha', 'THA.LOC104815732' => 'tha', 'THA.LOC104823528' => 'tha', 'Thecc.02G365600' => 'tca', 'Thecc.06G222300' => 'tca', 'Thecc.09G261800' => 'tca', 'Thecc.09G291400' => 'tca', 'Thhalv10003028m.g' => 'esa', 'Thhalv10007886m.g' => 'esa', 'Thhalv10016085m.g' => 'esa', 'Thhalv10016681m.g' => 'esa', 'Thhalv10020951m.g' => 'esa', 'TPR.G15598' => 'tpr', 'TPR.G29305' => 'tpr', 'TPR.G32395' => 'tpr', 'TPR.G36998' => 'tpr', 'TPR.G4227' => 'tpr', 'TWI18G1433' => 'twi', 'TWI31G0755' => 'twi', 'TWI38G0912' => 'twi', 'TWI75G1097' => 'twi', 'TWI75G1619' => 'twi', 'TWI79G1336' => 'twi', 'unitig_0.g943' => 'ugi', 'unitig_0.g944' => 'ugi', 'unitig_22.g6646' => 'ugi', 'unitig_37.g12681' => 'ugi', 'unitig_8.g3290' => 'ugi', 'vmacro03278' => 'vma', 'vmacro12197' => 'vma', 'vmacro14478' => 'vma', 'vmacro15787' => 'vma', 'vmacro15789' => 'vma', 'vmacro15790' => 'vma', 'vmacro15806' => 'vma', 'vmacro22907' => 'vma', 'vmacro22908' => 'vma', 'vmacro22909' => 'vma', 'vmacro23108' => 'vma', 'VMungo0540G0540' => 'vmu', 'VMungo0540G2468' => 'vmu', 'VMungo1080G0390' => 'vmu', 'VMungo1080G1165' => 'vmu', 'VMungo1127G0170' => 'vmu', 'VMungo1127G2099' => 'vmu', 'VMungo1215G3013' => 'vmu', 'Zm00001eb013110' => 'zma', 'Zm00001eb084260' => 'zma', 'Zm00001eb096110' => 'zma', 'Zm00001eb217510' => 'zma', 'Zm00001eb322550' => 'zma', 'Zm00001eb390770' => 'zma', 'Zm00001eb397170' => 'zma', 'Zm00001eb404610' => 'zma', 'Zm00001eb421790' => 'zma' ), 'gf_id' => 'HOM05D000911', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000911' ), 'data_identifier' => 'HOM05D000911', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000911', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27780' => 'bna', 'A03p35380' => 'bna', 'A04p21160' => 'bna', 'A05p40570' => 'bna', 'A06p26900' => 'bna', 'A08p33230' => 'bna', 'A09p65960' => 'bna', 'A10p18290' => 'bna', 'Aa31LG1G12990' => 'aar', 'Aa31LG1G2980' => 'aar', 'Aa31LG4G14320' => 'aar', 'Aa31LG7G11800' => 'aar', 'Aa31sc36G50' => 'aar', 'Aa31sc36G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3721' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5459' => 'aag', 'Actinidia03028' => 'ach', 'Actinidia03753' => 'ach', 'Actinidia04187' => 'ach', 'Actinidia05509' => 'ach', 'Actinidia24180' => 'ach', 'Actinidia26906' => 'ach', 'Actinidia37097' => 'ach', 'Actinidia38249' => 'ach', 'Ah.01g003470' => 'amhyb', 'Ah.01g004580' => 'amhyb', 'Ah.01g014850' => 'amhyb', 'Ah.01g016830' => 'amhyb', 'Ah.14g088000' => 'amhyb', 'AL1G22980' => 'aly', 'AL3G18990' => 'aly', 'AL4G22440' => 'aly', 'AL4G33180' => 'aly', 'AL5G22920' => 'aly', 'AL6G33660' => 'aly', 'AL8G20720' => 'aly', 'Aqoxy1G00935' => 'aox', 'Aqoxy1G02094' => 'aox', 'Aqoxy2G01239' => 'aox', 'Aqoxy4G01870' => 'aox', 'Aqoxy7G00450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.36ZVTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71EM27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5D6C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH3WRE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3NCM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RIM768' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YB5YRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z36GDV' => 'arhy', 'AT1G08250' => 'ath', 'AT1G11790' => 'ath', 'AT2G27820' => 'ath', 'AT3G07630' => 'ath', 'AT3G44720' => 'ath', 'AT5G22630' => 'ath', 'ATR0693G304' => 'atr', 'ATR0794G109' => 'atr', 'ATR0820G120' => 'atr', 'ATR1159G064' => 'atr', 'Atru.chr10.2239' => 'acertr', 'Atru.chr3.3371' => 'acertr', 'Atru.chr6.3202' => 'acertr', 'AUR62006499' => 'cqu', 'AUR62012718' => 'cqu', 'AUR62021938' => 'cqu', 'AUR62023932' => 'cqu', 'AUR62025034' => 'cqu', 'AUR62025035' => 'cqu', 'AUR62038307' => 'cqu', 'AUR62043466' => 'cqu', 'BcaB02g10748' => 'bca', 'BcaB03g13231' => 'bca', 'BcaB03g14689' => 'bca', 'BcaB05g22716' => 'bca', 'BcaB06g28172' => 'bca', 'BcaB08g36413' => 'bca', 'BcaC01g02186' => 'bca', 'BcaC01g04272' => 'bca', 'BcaC02g08080' => 'bca', 'BcaC02g08227' => 'bca', 'BcaC03g13901' => 'bca', 'BcaC04g19593' => 'bca', 'BcaC04g20874' => 'bca', 'BcaC05g29557' => 'bca', 'BcaC06g35505' => 'bca', 'BcaC07g41954' => 'bca', 'BcaC07g41955' => 'bca', 'BcaC07g41956' => 'bca', 'BcaC07g42519' => 'bca', 'BcaC07g42520' => 'bca', 'BcaC07g42523' => 'bca', 'BcaC07g42524' => 'bca', 'BcaC07g42525' => 'bca', 'BcaC08g47480' => 'bca', 'BcaC08g47481' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00530' => 'bna', 'BolC2t07178H' => 'bol', 'BolC3t16567H' => 'bol', 'BolC4t27234H' => 'bol', 'BolC5t29728H' => 'bol', 'BolC5t34622H' => 'bol', 'BolC6t40321H' => 'bol', 'BolC7t42028H' => 'bol', 'BolC8t49125H' => 'bol', 'BolC8t52538H' => 'bol', 'BolC8t52539H' => 'bol', 'BolC9t56681H' => 'bol', 'BolC9t58266H' => 'bol', 'BolSC21t60294H' => 'bol', 'BraA02t05670Z' => 'bra', 'BraA03t12716Z' => 'bra', 'BraA04t17685Z' => 'bra', 'BraA05t22788Z' => 'bra', 'BraA06t24032Z' => 'bra', 'BraA06t25625Z' => 'bra', 'BraA07t27930Z' => 'bra', 'BraA08t35242Z' => 'bra', 'BraA09t38609Z' => 'bra', 'BraA10t43905Z' => 'bra', 'C02p11060' => 'bna', 'C03p42990' => 'bna', 'C03p67310' => 'bna', 'C04p56990' => 'bna', 'C04p58660' => 'bna', 'C05p09890' => 'bna', 'C05p59680' => 'bna', 'C06p19830' => 'bna', 'C06p53040' => 'bna', 'C07p15230' => 'bna', 'C08p50070' => 'bna', 'C08p50090' => 'bna', 'C09p38330' => 'bna', 'C09p53940' => 'bna', 'CAN.G1014.1' => 'can', 'CAN.G644.30' => 'can', 'CAN.G84.47' => 'can', 'CAN.G919.8' => 'can', 'CANSAT54G0113' => 'cansat', 'CANSAT54G1286' => 'cansat', 'CANSAT64G1020' => 'cansat', 'CARHR008080' => 'chi', 'CARHR008090' => 'chi', 'CARHR012130' => 'chi', 'CARHR038390' => 'chi', 'CARHR082330' => 'chi', 'CARHR120520' => 'chi', 'CARHR151470' => 'chi', 'CARHR190950' => 'chi', 'Carub.0001s0760' => 'cru', 'Carub.0001s1146' => 'cru', 'Carub.0003s0721' => 'cru', 'Carub.0004s0858' => 'cru', 'Carub.0005s1040' => 'cru', 'Carub.0006s2035' => 'cru', 'Carub.0015s0005' => 'cru', 'Ca_01607_v3' => 'car', 'Ca_01677_v3' => 'car', 'Ca_06087_v3' => 'car', 'Ca_19238_v3' => 'car', 'Ca_19373_v3' => 'car', 'Ca_21079_v3' => 'car', 'CBR_g54016' => 'cbr', 'CBR_g54018' => 'cbr', 'CBR_g54020' => 'cbr', 'Cc01_g09780' => 'ccan', 'Cc01_g11680' => 'ccan', 'Cc02_g15610' => 'ccan', 'Cc05_g04350' => 'ccan', 'Cc09_g01580' => 'ccan', 'CDE01G0795' => 'cde', 'CDE02G2024' => 'cde', 'CDE02G2260' => 'cde', 'CDE02G4561' => 'cde', 'CDE05G2733' => 'cde', 'CDE05G3422' => 'cde', 'CDE06G2003' => 'cde', 'CDE08G0576' => 'cde', 'CDE09G0048' => 'cde', 'CDE11G0805' => 'cde', 'Cfa003644' => 'cfa', 'Cfa006290' => 'cfa', 'Cfa010080' => 'cfa', 'Cfa011376' => 'cfa', 'Cfa011576' => 'cfa', 'Cfa011577' => 'cfa', 'Cfa014389' => 'cfa', 'Ciclev10006044m.g' => 'ccl', 'Ciclev10006954m.g' => 'ccl', 'Ciclev10015131m.g' => 'ccl', 'Ciclev10015580m.g' => 'ccl', 'Ciclev10028359m.g' => 'ccl', 'Ciclev10028573m.g' => 'ccl', 'CiPaw.03G159300' => 'cil', 'CiPaw.04G115100' => 'cil', 'CiPaw.09G092800' => 'cil', 'CiPaw.10G071800' => 'cil', 'CiPaw.13G105800' => 'cil', 'CiPaw.13G141000' => 'cil', 'CiPaw.14G103400' => 'cil', 'ClCG01G012700' => 'cla', 'ClCG01G012720' => 'cla', 'ClCG01G021920' => 'cla', 'ClCG02G008870' => 'cla', 'ClCG02G020840' => 'cla', 'ClCG02G021930' => 'cla', 'COL.COLO4_19302' => 'col', 'COL.COLO4_25262' => 'col', 'COL.COLO4_31788' => 'col', 'Cpa.g.c34684' => 'cpa', 'Cpa.g.c36520.1' => 'cpa', 'Cpa.g.c45626' => 'cpa', 'Cpa.g.sc121.17' => 'cpa', 'Cpa.g.sc13.22' => 'cpa', 'Cpa.g.sc87.88' => 'cpa', 'Cre06.g261800' => 'cre', 'CsaV3_1G014500' => 'csa', 'CsaV3_1G014510' => 'csa', 'CsaV3_2G034880' => 'csa', 'CsaV3_6G014760' => 'csa', 'CsaV3_6G021500' => 'csa', 'CsaV3_6G048980' => 'csa', 'CSS0002511' => 'camsi', 'CSS0007556' => 'camsi', 'CSS0008532' => 'camsi', 'CSS0009709' => 'camsi', 'CSS0010486' => 'camsi', 'CSS0016768' => 'camsi', 'CSS0023512' => 'camsi', 'CSS0025341' => 'camsi', 'CSS0027999' => 'camsi', 'CSS0028944' => 'camsi', 'CSS0032292' => 'camsi', 'CSS0032464' => 'camsi', 'CSS0037153' => 'camsi', 'CSS0039256' => 'camsi', 'CSS0048392' => 'camsi', 'CSS0050458' => 'camsi', 'DCAR_004224' => 'dca', 'DCAR_006147' => 'dca', 'DCAR_006465' => 'dca', 'DCAR_008159' => 'dca', 'DCAR_012164' => 'dca', 'DCAR_019764' => 'dca', 'Dinv05418' => 'din', 'Dinv10839' => 'din', 'Dinv12521' => 'din', 'Dinv13900' => 'din', 'Dinv29426' => 'din', 'Duzib150G0263' => 'dzi', 'Duzib168G1178' => 'dzi', 'Duzib168G1924' => 'dzi', 'Duzib170G0299' => 'dzi', 'Duzib170G0813' => 'dzi', 'Duzib235G1128' => 'dzi', 'Duzib248G1060' => 'dzi', 'ECA232G1910' => 'eca', 'ECA233G4621' => 'eca', 'ECA238G1216' => 'eca', 'ECA238G1784' => 'eca', 'ECA248G1242' => 'eca', 'EL10Ac8g20071' => 'bvu', 'EL10Ac9g21086' => 'bvu', 'EL10Ac9g22407' => 'bvu', 'EL10Ac9g22412' => 'bvu', 'Eucgr.A01119' => 'egr', 'Eucgr.E04043' => 'egr', 'Eucgr.J00428' => 'egr', 'Eucgr.J00958' => 'egr', 'FAN11G3091' => 'fan', 'FAN11G3651' => 'fan', 'FAN16G2566' => 'fan', 'FAN21G3155' => 'fan', 'FAN21G3400' => 'fan', 'FAN21G3543' => 'fan', 'FAN25G0234' => 'fan', 'FAN25G1422' => 'fan', 'FAN25G3392' => 'fan', 'FvH4_3g01940' => 'fve', 'FvH4_3g29870' => 'fve', 'FvH4_3g33680' => 'fve', 'Glyma.09G004200' => 'gma', 'Glyma.11G151288' => 'gma', 'Glyma.11G189100' => 'gma', 'Glyma.12G072500' => 'gma', 'Glyma.12G085500' => 'gma', 'Glyma.12G181800' => 'gma', 'Glyma.12G193000' => 'gma', 'Glyma.13G309300' => 'gma', 'Glyma.13G319000' => 'gma', 'Glyma.17G012600' => 'gma', 'Gohir.A06G148600' => 'ghi', 'Gohir.A07G115800' => 'ghi', 'Gohir.A08G003600' => 'ghi', 'Gohir.A09G093300' => 'ghi', 'Gohir.A09G105400' => 'ghi', 'Gohir.A09G105500' => 'ghi', 'Gohir.D06G154600' => 'ghi', 'Gohir.D07G120200' => 'ghi', 'Gohir.D08G013900' => 'ghi', 'Gohir.D09G093100' => 'ghi', 'Gohir.D09G102200' => 'ghi', 'Gohir.D09G102300' => 'ghi', 'Gorai.001G129400' => 'gra', 'Gorai.004G008200' => 'gra', 'Gorai.006G109800' => 'gra', 'Gorai.006G119500' => 'gra', 'Gorai.006G121300' => 'gra', 'Gorai.010G180700' => 'gra', 'GSVIVG01012716001' => 'vvi', 'GSVIVG01025118001' => 'vvi', 'GSVIVG01030439001' => 'vvi', 'GSVIVG01031397001' => 'vvi', 'HanXRQChr01g0004201' => 'han', 'HanXRQChr02g0054941' => 'han', 'HanXRQChr05g0141811' => 'han', 'HanXRQChr07g0197751' => 'han', 'HanXRQChr11g0346691' => 'han', 'HanXRQChr13g0396971' => 'han', 'HanXRQChr14g0432951' => 'han', 'HanXRQChr14g0452001' => 'han', 'HanXRQChr15g0496681' => 'han', 'HanXRQChr17g0557491' => 'han', 'HanXRQChr17g0557501' => 'han', 'Haze_06809' => 'cav', 'Haze_12852' => 'cav', 'Haze_15850' => 'cav', 'Haze_23446' => 'cav', 'Haze_23942' => 'cav', 'Haze_23943' => 'cav', 'Hma1.2p1_0091F.1_g046450' => 'hma', 'Hma1.2p1_0128F.1_g059910' => 'hma', 'Hma1.2p1_0249F.1_g102260' => 'hma', 'Hma1.2p1_0453F.1_g156190' => 'hma', 'Hma1.2p1_0695F.1_g204380' => 'hma', 'Hma1.2p1_0749F.1_g212650' => 'hma', 'Hma1.2p1_2156F.1_g315420' => 'hma', 'Hma1.2p1_2686F.1_g326940' => 'hma', 'HPP92_006428' => 'vpl', 'HPP92_012069' => 'vpl', 'HPP92_014129' => 'vpl', 'HPP92_014133' => 'vpl', 'HPP92_017315' => 'vpl', 'HPP92_026445' => 'vpl', 'HPP92_026446' => 'vpl', 'Hund00774' => 'sun', 'Hund07682' => 'sun', 'Hund21413' => 'sun', 'Hund23462' => 'sun', 'Hund23463' => 'sun', 'Lalb_Chr03g0027911' => 'lal', 'Lalb_Chr13g0304271' => 'lal', 'Lalb_Chr19g0137471' => 'lal', 'Lalb_Chr22g0350651' => 'lal', 'Lalb_Chr24g0395151' => 'lal', 'Lj1A1231T40' => 'lonja', 'Lj1A221T48' => 'lonja', 'Lj1C924T12' => 'lonja', 'Lj2C993G6' => 'lonja', 'Lj3g0005790' => 'lja', 'Lj3g0015432' => 'lja', 'Lj3g0017722' => 'lja', 'Lj3g0018497' => 'lja', 'Lj4g0025071' => 'lja', 'Lsat_1_v5_gn_1_129680' => 'lsa', 'Lsat_1_v5_gn_2_25321' => 'lsa', 'Lsat_1_v5_gn_2_95461' => 'lsa', 'Lsat_1_v5_gn_4_159620' => 'lsa', 'Lsat_1_v5_gn_6_41301' => 'lsa', 'Lsat_1_v5_gn_6_74660' => 'lsa', 'Lsat_1_v5_gn_7_11520' => 'lsa', 'Lsat_1_v5_gn_9_67680' => 'lsa', 'Manes.04G008300' => 'mes', 'Manes.04G008400' => 'mes', 'Manes.04G026500' => 'mes', 'Manes.10G135300' => 'mes', 'Manes.11G157300' => 'mes', 'Manes.12G074000' => 'mes', 'Manes.16G006200' => 'mes', 'Manes.17G026400' => 'mes', 'Mapoly0024s0086' => 'mpo', 'Mapoly0024s0087' => 'mpo', 'Mapoly0071s0057' => 'mpo', 'Mapoly0204s0012' => 'mpo', 'MBI04_g37681_MAGBIO' => 'mbi', 'MBI05_g17779_MAGBIO' => 'mbi', 'MBI12_g31184_MAGBIO' => 'mbi', 'MBI17_g11083_MAGBIO' => 'mbi', 'MBI18_g03883_MAGBIO' => 'mbi', 'MBI18_g28940_MAGBIO' => 'mbi', 'MCO01G690' => 'mco', 'MD03G1109900' => 'mdo', 'MD03G1134800' => 'mdo', 'MD05G1348000' => 'mdo', 'MD10G1322400' => 'mdo', 'MD11G1123300' => 'mdo', 'MD11G1157600' => 'mdo', 'Medtr2g084875' => 'mtr', 'Medtr2g088130' => 'mtr', 'Medtr4g055310' => 'mtr', 'Medtr4g061070' => 'mtr', 'Medtr4g132250' => 'mtr', 'MELO3C004795.2' => 'cme', 'MELO3C004797.2' => 'cme', 'MELO3C007396.2' => 'cme', 'MELO3C019277.2' => 'cme', 'MELO3C021449.2' => 'cme', 'MELO3C025736.2' => 'cme', 'Migut.D02175' => 'egut', 'Migut.H01573' => 'egut', 'Migut.M01327' => 'egut', 'Migut.N02513' => 'egut', 'MSTRG.14638' => 'ama', 'MSTRG.18632' => 'ama', 'MSTRG.7203' => 'ama', 'Nitab4.5_0000533g0140' => 'nta', 'Nitab4.5_0000888g0150' => 'nta', 'Nitab4.5_0001453g0040' => 'nta', 'Nitab4.5_0002827g0090' => 'nta', 'Nitab4.5_0003082g0040' => 'nta', 'Nitab4.5_0007799g0040' => 'nta', 'Nitab4.5_0008983g0010' => 'nta', 'Nitab4.5_0009017g0020' => 'nta', 'Nn1g02132' => 'nnu', 'Nn1g03492' => 'nnu', 'Nn1g03493' => 'nnu', 'Nn1g03494' => 'nnu', 'Nn1g07164' => 'nnu', 'Nn1g07291' => 'nnu', 'Nn2g10655' => 'nnu', 'Nn2g11652' => 'nnu', 'Nn2g14008' => 'nnu', 'Nn3g17476' => 'nnu', 'Nn3g17477' => 'nnu', 'Nn4g22370' => 'nnu', 'Nn4g25255' => 'nnu', 'Nn5g27755' => 'nnu', 'Nn6g34260' => 'nnu', 'Nn6g35041' => 'nnu', 'Oeu005924.1' => 'oeu', 'Oeu008383.1' => 'oeu', 'Oeu014928.1' => 'oeu', 'Oeu019889.1' => 'oeu', 'Oeu022271.1' => 'oeu', 'Oeu025271.1' => 'oeu', 'Oeu036302.1' => 'oeu', 'Oeu044100.1' => 'oeu', 'Os01g0528300' => 'osa', 'Os03g0286200' => 'osa', 'Os04g0406600' => 'osa', 'Os07g0512000' => 'osa', 'Os07g0694600' => 'osa', 'Os08g0411000' => 'osa', 'Os09g0565700' => 'osa', 'Os09g0566050' => 'osa', 'Os10g0523700' => 'osa', 'Peaxi162Scf00002g00514' => 'pax', 'Peaxi162Scf00047g01817' => 'pax', 'Peaxi162Scf00114g00001' => 'pax', 'Peaxi162Scf00147g00613' => 'pax', 'Peaxi162Scf00389g00425' => 'pax', 'PGR042G1139' => 'pgr', 'PGR042G3273' => 'pgr', 'PGR102G2180' => 'pgr', 'PGR119G0234' => 'pgr', 'PGR119G0668' => 'pgr', 'PGSC0003DMG400007122' => 'stu', 'PGSC0003DMG400016478' => 'stu', 'PGSC0003DMG400025374' => 'stu', 'PGSC0003DMG400026536' => 'stu', 'Phvul.003G079600' => 'pvu', 'Phvul.005G115600' => 'pvu', 'Phvul.005G127100' => 'pvu', 'Phvul.006G149500' => 'pvu', 'Phvul.006G149600' => 'pvu', 'Phvul.011G071800' => 'pvu', 'Phvul.011G090400' => 'pvu', 'Potri.004G013400' => 'ptr', 'Potri.004G188100' => 'ptr', 'Potri.008G195500' => 'ptr', 'Potri.009G148800' => 'ptr', 'Potri.011G004700' => 'ptr', 'Pp3c17_22810' => 'ppa', 'Pp3c18_4480' => 'ppa', 'Pp3c19_13030' => 'ppa', 'Pp3c1_33620' => 'ppa', 'Pp3c2_9380' => 'ppa', 'PRCOL_00001023' => 'pco', 'Prupe.3G216300' => 'ppe', 'Prupe.4G019500' => 'ppe', 'Prupe.6G092500' => 'ppe', 'Prupe.6G119200' => 'ppe', 'Psat0s1945g0080' => 'psa', 'Psat0s4167g0040' => 'psa', 'Psat1g185800' => 'psa', 'Psat4g006440' => 'psa', 'Psat4g006480' => 'psa', 'Psat4g168120' => 'psa', 'Psat5g255680' => 'psa', 'Psat5g261760' => 'psa', 'Psat7g222120' => 'psa', 'PSO063G7252' => 'pso', 'PSO170G4778' => 'pso', 'PSO210G2249' => 'pso', 'PSO339G2411' => 'pso', 'PSO339G2457' => 'pso', 'PSO339G2854' => 'pso', 'PSO339G4288' => 'pso', 'PSO339G4615' => 'pso', 'PSO384G2796' => 'pso', 'PSO384G2940' => 'pso', 'PSO384G4227' => 'pso', 'PSO478G1425' => 'pso', 'PSO541G3863' => 'pso', 'PSO675G0507' => 'pso', 'PSO782G0338' => 'pso', 'PSO832G0644' => 'pso', 'QL01p013664' => 'qlo', 'QL01p036598' => 'qlo', 'QL05p072984' => 'qlo', 'QL08p005768' => 'qlo', 'QL08p032743' => 'qlo', 'QL93p0073_0439' => 'qlo', 'QL93p0073_0444' => 'qlo', 'RcHm_v2.0_Chr5g0002851' => 'rch', 'RcHm_v2.0_Chr5g0055201' => 'rch', 'RcHm_v2.0_Chr5g0061191' => 'rch', 'RcHm_v2.0_Chr7g0203231' => 'rch', 'Rhsim01G0208100' => 'rsi', 'Rhsim01G0208200' => 'rsi', 'Rhsim02G0106500' => 'rsi', 'Rhsim03G0107900' => 'rsi', 'Rhsim06G0163400' => 'rsi', 'Rhsim13G0105200' => 'rsi', 'Sabra04G0006300' => 'sbr', 'Sabra04G0127000' => 'sbr', 'Sabra08G0148700' => 'sbr', 'Sabra09G0117400' => 'sbr', 'SalBow1G3326' => 'sbo', 'SalBow3G3228' => 'sbo', 'SalBow6G1634' => 'sbo', 'SalBow6G3603' => 'sbo', 'SalBow6G5266' => 'sbo', 'SalBow7G2265' => 'sbo', 'SalBow8G0850' => 'sbo', 'SalBow8G2592' => 'sbo', 'Sc05g0009240' => 'sci', 'Sc12g0002300' => 'sci', 'Sc21g0000100' => 'sci', 'Sc21g0004720' => 'sci', 'Sed0002949' => 'sed', 'Sed0004114' => 'sed', 'Sed0004306' => 'sed', 'Sed0006172' => 'sed', 'Sed0008413' => 'sed', 'Sed0013809' => 'sed', 'Sed0019556' => 'sed', 'SEGI_03570' => 'sgi', 'SEGI_07859' => 'sgi', 'SEGI_15042' => 'sgi', 'SEGI_16263' => 'sgi', 'SEGI_16552' => 'sgi', 'SEGI_24331' => 'sgi', 'SEGI_27316' => 'sgi', 'SEGI_29521' => 'sgi', 'SEGI_41342' => 'sgi', 'SGA_v2.0_scaffold27G11617' => 'sas', 'SGA_v2.0_scaffold316G48428' => 'sas', 'SGA_v2.0_scaffold49G18261' => 'sas', 'SGA_v2.0_scaffold7G03831' => 'sas', 'SGA_v2.0_scaffold93G28359' => 'sas', 'SHI02210' => 'shi', 'SHI06028' => 'shi', 'SHI06321' => 'shi', 'SMO111G0012' => 'smo', 'SMO228G0080' => 'smo', 'SMO356G0756' => 'smo', 'Solyc02g080620.3' => 'sly', 'Solyc06g074530.1' => 'sly', 'Solyc11g066890.1' => 'sly', 'Solyc11g072520.3' => 'sly', 'Sopen02g025330' => 'spe', 'Sopen06g031000' => 'spe', 'Sopen09g008240' => 'spe', 'Sopen09g025210' => 'spe', 'Sopen11g026600' => 'spe', 'Sopen11g030170' => 'spe', 'Sp1g10420' => 'spa', 'Sp3g06570' => 'spa', 'Sp4g10660' => 'spa', 'Sp5g16460' => 'spa', 'Sp6g22710' => 'spa', 'TAR365G0112' => 'tar', 'TAR369G0717' => 'tar', 'TAR374G0976' => 'tar', 'TAR623G1128' => 'tar', 'TAR626G1937' => 'tar', 'TAR627G0123' => 'tar', 'TAR628G0305' => 'tar', 'TAR636G1176' => 'tar', 'TAR636G2442' => 'tar', 'THA.LOC104800556' => 'tha', 'THA.LOC104809501' => 'tha', 'THA.LOC104815126' => 'tha', 'THA.LOC104815732' => 'tha', 'THA.LOC104823528' => 'tha', 'Thecc.02G365600' => 'tca', 'Thecc.06G222300' => 'tca', 'Thecc.09G261800' => 'tca', 'Thecc.09G291400' => 'tca', 'Thhalv10003028m.g' => 'esa', 'Thhalv10007886m.g' => 'esa', 'Thhalv10016085m.g' => 'esa', 'Thhalv10016681m.g' => 'esa', 'Thhalv10020951m.g' => 'esa', 'TPR.G15598' => 'tpr', 'TPR.G29305' => 'tpr', 'TPR.G32395' => 'tpr', 'TPR.G36998' => 'tpr', 'TPR.G4227' => 'tpr', 'TWI18G1433' => 'twi', 'TWI31G0755' => 'twi', 'TWI38G0912' => 'twi', 'TWI75G1097' => 'twi', 'TWI75G1619' => 'twi', 'TWI79G1336' => 'twi', 'unitig_0.g943' => 'ugi', 'unitig_0.g944' => 'ugi', 'unitig_22.g6646' => 'ugi', 'unitig_37.g12681' => 'ugi', 'unitig_8.g3290' => 'ugi', 'vmacro03278' => 'vma', 'vmacro12197' => 'vma', 'vmacro14478' => 'vma', 'vmacro15787' => 'vma', 'vmacro15789' => 'vma', 'vmacro15790' => 'vma', 'vmacro15806' => 'vma', 'vmacro22907' => 'vma', 'vmacro22908' => 'vma', 'vmacro22909' => 'vma', 'vmacro23108' => 'vma', 'VMungo0540G0540' => 'vmu', 'VMungo0540G2468' => 'vmu', 'VMungo1080G0390' => 'vmu', 'VMungo1080G1165' => 'vmu', 'VMungo1127G0170' => 'vmu', 'VMungo1127G2099' => 'vmu', 'VMungo1215G3013' => 'vmu', 'Zm00001eb013110' => 'zma', 'Zm00001eb084260' => 'zma', 'Zm00001eb096110' => 'zma', 'Zm00001eb217510' => 'zma', 'Zm00001eb322550' => 'zma', 'Zm00001eb390770' => 'zma', 'Zm00001eb397170' => 'zma', 'Zm00001eb404610' => 'zma', 'Zm00001eb421790' => 'zma' ) $gf_id = 'HOM05D000911' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000911' ) $data_identifier = 'HOM05D000911' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 16, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 5, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 6, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 8, 'nnu' => (int) 16, 'oeu' => (int) 8, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 5, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 16, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421790' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000911', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27780' => 'bna', 'A03p35380' => 'bna', 'A04p21160' => 'bna', 'A05p40570' => 'bna', 'A06p26900' => 'bna', 'A08p33230' => 'bna', 'A09p65960' => 'bna', 'A10p18290' => 'bna', 'Aa31LG1G12990' => 'aar', 'Aa31LG1G2980' => 'aar', 'Aa31LG4G14320' => 'aar', 'Aa31LG7G11800' => 'aar', 'Aa31sc36G50' => 'aar', 'Aa31sc36G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3721' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5459' => 'aag', 'Actinidia03028' => 'ach', 'Actinidia03753' => 'ach', 'Actinidia04187' => 'ach', 'Actinidia05509' => 'ach', 'Actinidia24180' => 'ach', 'Actinidia26906' => 'ach', 'Actinidia37097' => 'ach', 'Actinidia38249' => 'ach', 'Ah.01g003470' => 'amhyb', 'Ah.01g004580' => 'amhyb', 'Ah.01g014850' => 'amhyb', 'Ah.01g016830' => 'amhyb', 'Ah.14g088000' => 'amhyb', 'AL1G22980' => 'aly', 'AL3G18990' => 'aly', 'AL4G22440' => 'aly', 'AL4G33180' => 'aly', 'AL5G22920' => 'aly', 'AL6G33660' => 'aly', 'AL8G20720' => 'aly', 'Aqoxy1G00935' => 'aox', 'Aqoxy1G02094' => 'aox', 'Aqoxy2G01239' => 'aox', 'Aqoxy4G01870' => 'aox', 'Aqoxy7G00450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.36ZVTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71EM27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5D6C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH3WRE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3NCM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RIM768' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YB5YRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z36GDV' => 'arhy', 'AT1G08250' => 'ath', 'AT1G11790' => 'ath', 'AT2G27820' => 'ath', 'AT3G07630' => 'ath', 'AT3G44720' => 'ath', 'AT5G22630' => 'ath', 'ATR0693G304' => 'atr', 'ATR0794G109' => 'atr', 'ATR0820G120' => 'atr', 'ATR1159G064' => 'atr', 'Atru.chr10.2239' => 'acertr', 'Atru.chr3.3371' => 'acertr', 'Atru.chr6.3202' => 'acertr', 'AUR62006499' => 'cqu', 'AUR62012718' => 'cqu', 'AUR62021938' => 'cqu', 'AUR62023932' => 'cqu', 'AUR62025034' => 'cqu', 'AUR62025035' => 'cqu', 'AUR62038307' => 'cqu', 'AUR62043466' => 'cqu', 'BcaB02g10748' => 'bca', 'BcaB03g13231' => 'bca', 'BcaB03g14689' => 'bca', 'BcaB05g22716' => 'bca', 'BcaB06g28172' => 'bca', 'BcaB08g36413' => 'bca', 'BcaC01g02186' => 'bca', 'BcaC01g04272' => 'bca', 'BcaC02g08080' => 'bca', 'BcaC02g08227' => 'bca', 'BcaC03g13901' => 'bca', 'BcaC04g19593' => 'bca', 'BcaC04g20874' => 'bca', 'BcaC05g29557' => 'bca', 'BcaC06g35505' => 'bca', 'BcaC07g41954' => 'bca', 'BcaC07g41955' => 'bca', 'BcaC07g41956' => 'bca', 'BcaC07g42519' => 'bca', 'BcaC07g42520' => 'bca', 'BcaC07g42523' => 'bca', 'BcaC07g42524' => 'bca', 'BcaC07g42525' => 'bca', 'BcaC08g47480' => 'bca', 'BcaC08g47481' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00530' => 'bna', 'BolC2t07178H' => 'bol', 'BolC3t16567H' => 'bol', 'BolC4t27234H' => 'bol', 'BolC5t29728H' => 'bol', 'BolC5t34622H' => 'bol', 'BolC6t40321H' => 'bol', 'BolC7t42028H' => 'bol', 'BolC8t49125H' => 'bol', 'BolC8t52538H' => 'bol', 'BolC8t52539H' => 'bol', 'BolC9t56681H' => 'bol', 'BolC9t58266H' => 'bol', 'BolSC21t60294H' => 'bol', 'BraA02t05670Z' => 'bra', 'BraA03t12716Z' => 'bra', 'BraA04t17685Z' => 'bra', 'BraA05t22788Z' => 'bra', 'BraA06t24032Z' => 'bra', 'BraA06t25625Z' => 'bra', 'BraA07t27930Z' => 'bra', 'BraA08t35242Z' => 'bra', 'BraA09t38609Z' => 'bra', 'BraA10t43905Z' => 'bra', 'C02p11060' => 'bna', 'C03p42990' => 'bna', 'C03p67310' => 'bna', 'C04p56990' => 'bna', 'C04p58660' => 'bna', 'C05p09890' => 'bna', 'C05p59680' => 'bna', 'C06p19830' => 'bna', 'C06p53040' => 'bna', 'C07p15230' => 'bna', 'C08p50070' => 'bna', 'C08p50090' => 'bna', 'C09p38330' => 'bna', 'C09p53940' => 'bna', 'CAN.G1014.1' => 'can', 'CAN.G644.30' => 'can', 'CAN.G84.47' => 'can', 'CAN.G919.8' => 'can', 'CANSAT54G0113' => 'cansat', 'CANSAT54G1286' => 'cansat', 'CANSAT64G1020' => 'cansat', 'CARHR008080' => 'chi', 'CARHR008090' => 'chi', 'CARHR012130' => 'chi', 'CARHR038390' => 'chi', 'CARHR082330' => 'chi', 'CARHR120520' => 'chi', 'CARHR151470' => 'chi', 'CARHR190950' => 'chi', 'Carub.0001s0760' => 'cru', 'Carub.0001s1146' => 'cru', 'Carub.0003s0721' => 'cru', 'Carub.0004s0858' => 'cru', 'Carub.0005s1040' => 'cru', 'Carub.0006s2035' => 'cru', 'Carub.0015s0005' => 'cru', 'Ca_01607_v3' => 'car', 'Ca_01677_v3' => 'car', 'Ca_06087_v3' => 'car', 'Ca_19238_v3' => 'car', 'Ca_19373_v3' => 'car', 'Ca_21079_v3' => 'car', 'CBR_g54016' => 'cbr', 'CBR_g54018' => 'cbr', 'CBR_g54020' => 'cbr', 'Cc01_g09780' => 'ccan', 'Cc01_g11680' => 'ccan', 'Cc02_g15610' => 'ccan', 'Cc05_g04350' => 'ccan', 'Cc09_g01580' => 'ccan', 'CDE01G0795' => 'cde', 'CDE02G2024' => 'cde', 'CDE02G2260' => 'cde', 'CDE02G4561' => 'cde', 'CDE05G2733' => 'cde', 'CDE05G3422' => 'cde', 'CDE06G2003' => 'cde', 'CDE08G0576' => 'cde', 'CDE09G0048' => 'cde', 'CDE11G0805' => 'cde', 'Cfa003644' => 'cfa', 'Cfa006290' => 'cfa', 'Cfa010080' => 'cfa', 'Cfa011376' => 'cfa', 'Cfa011576' => 'cfa', 'Cfa011577' => 'cfa', 'Cfa014389' => 'cfa', 'Ciclev10006044m.g' => 'ccl', 'Ciclev10006954m.g' => 'ccl', 'Ciclev10015131m.g' => 'ccl', 'Ciclev10015580m.g' => 'ccl', 'Ciclev10028359m.g' => 'ccl', 'Ciclev10028573m.g' => 'ccl', 'CiPaw.03G159300' => 'cil', 'CiPaw.04G115100' => 'cil', 'CiPaw.09G092800' => 'cil', 'CiPaw.10G071800' => 'cil', 'CiPaw.13G105800' => 'cil', 'CiPaw.13G141000' => 'cil', 'CiPaw.14G103400' => 'cil', 'ClCG01G012700' => 'cla', 'ClCG01G012720' => 'cla', 'ClCG01G021920' => 'cla', 'ClCG02G008870' => 'cla', 'ClCG02G020840' => 'cla', 'ClCG02G021930' => 'cla', 'COL.COLO4_19302' => 'col', 'COL.COLO4_25262' => 'col', 'COL.COLO4_31788' => 'col', 'Cpa.g.c34684' => 'cpa', 'Cpa.g.c36520.1' => 'cpa', 'Cpa.g.c45626' => 'cpa', 'Cpa.g.sc121.17' => 'cpa', 'Cpa.g.sc13.22' => 'cpa', 'Cpa.g.sc87.88' => 'cpa', 'Cre06.g261800' => 'cre', 'CsaV3_1G014500' => 'csa', 'CsaV3_1G014510' => 'csa', 'CsaV3_2G034880' => 'csa', 'CsaV3_6G014760' => 'csa', 'CsaV3_6G021500' => 'csa', 'CsaV3_6G048980' => 'csa', 'CSS0002511' => 'camsi', 'CSS0007556' => 'camsi', 'CSS0008532' => 'camsi', 'CSS0009709' => 'camsi', 'CSS0010486' => 'camsi', 'CSS0016768' => 'camsi', 'CSS0023512' => 'camsi', 'CSS0025341' => 'camsi', 'CSS0027999' => 'camsi', 'CSS0028944' => 'camsi', 'CSS0032292' => 'camsi', 'CSS0032464' => 'camsi', 'CSS0037153' => 'camsi', 'CSS0039256' => 'camsi', 'CSS0048392' => 'camsi', 'CSS0050458' => 'camsi', 'DCAR_004224' => 'dca', 'DCAR_006147' => 'dca', 'DCAR_006465' => 'dca', 'DCAR_008159' => 'dca', 'DCAR_012164' => 'dca', 'DCAR_019764' => 'dca', 'Dinv05418' => 'din', 'Dinv10839' => 'din', 'Dinv12521' => 'din', 'Dinv13900' => 'din', 'Dinv29426' => 'din', 'Duzib150G0263' => 'dzi', 'Duzib168G1178' => 'dzi', 'Duzib168G1924' => 'dzi', 'Duzib170G0299' => 'dzi', 'Duzib170G0813' => 'dzi', 'Duzib235G1128' => 'dzi', 'Duzib248G1060' => 'dzi', 'ECA232G1910' => 'eca', 'ECA233G4621' => 'eca', 'ECA238G1216' => 'eca', 'ECA238G1784' => 'eca', 'ECA248G1242' => 'eca', 'EL10Ac8g20071' => 'bvu', 'EL10Ac9g21086' => 'bvu', 'EL10Ac9g22407' => 'bvu', 'EL10Ac9g22412' => 'bvu', 'Eucgr.A01119' => 'egr', 'Eucgr.E04043' => 'egr', 'Eucgr.J00428' => 'egr', 'Eucgr.J00958' => 'egr', 'FAN11G3091' => 'fan', 'FAN11G3651' => 'fan', 'FAN16G2566' => 'fan', 'FAN21G3155' => 'fan', 'FAN21G3400' => 'fan', 'FAN21G3543' => 'fan', 'FAN25G0234' => 'fan', 'FAN25G1422' => 'fan', 'FAN25G3392' => 'fan', 'FvH4_3g01940' => 'fve', 'FvH4_3g29870' => 'fve', 'FvH4_3g33680' => 'fve', 'Glyma.09G004200' => 'gma', 'Glyma.11G151288' => 'gma', 'Glyma.11G189100' => 'gma', 'Glyma.12G072500' => 'gma', 'Glyma.12G085500' => 'gma', 'Glyma.12G181800' => 'gma', 'Glyma.12G193000' => 'gma', 'Glyma.13G309300' => 'gma', 'Glyma.13G319000' => 'gma', 'Glyma.17G012600' => 'gma', 'Gohir.A06G148600' => 'ghi', 'Gohir.A07G115800' => 'ghi', 'Gohir.A08G003600' => 'ghi', 'Gohir.A09G093300' => 'ghi', 'Gohir.A09G105400' => 'ghi', 'Gohir.A09G105500' => 'ghi', 'Gohir.D06G154600' => 'ghi', 'Gohir.D07G120200' => 'ghi', 'Gohir.D08G013900' => 'ghi', 'Gohir.D09G093100' => 'ghi', 'Gohir.D09G102200' => 'ghi', 'Gohir.D09G102300' => 'ghi', 'Gorai.001G129400' => 'gra', 'Gorai.004G008200' => 'gra', 'Gorai.006G109800' => 'gra', 'Gorai.006G119500' => 'gra', 'Gorai.006G121300' => 'gra', 'Gorai.010G180700' => 'gra', 'GSVIVG01012716001' => 'vvi', 'GSVIVG01025118001' => 'vvi', 'GSVIVG01030439001' => 'vvi', 'GSVIVG01031397001' => 'vvi', 'HanXRQChr01g0004201' => 'han', 'HanXRQChr02g0054941' => 'han', 'HanXRQChr05g0141811' => 'han', 'HanXRQChr07g0197751' => 'han', 'HanXRQChr11g0346691' => 'han', 'HanXRQChr13g0396971' => 'han', 'HanXRQChr14g0432951' => 'han', 'HanXRQChr14g0452001' => 'han', 'HanXRQChr15g0496681' => 'han', 'HanXRQChr17g0557491' => 'han', 'HanXRQChr17g0557501' => 'han', 'Haze_06809' => 'cav', 'Haze_12852' => 'cav', 'Haze_15850' => 'cav', 'Haze_23446' => 'cav', 'Haze_23942' => 'cav', 'Haze_23943' => 'cav', 'Hma1.2p1_0091F.1_g046450' => 'hma', 'Hma1.2p1_0128F.1_g059910' => 'hma', 'Hma1.2p1_0249F.1_g102260' => 'hma', 'Hma1.2p1_0453F.1_g156190' => 'hma', 'Hma1.2p1_0695F.1_g204380' => 'hma', 'Hma1.2p1_0749F.1_g212650' => 'hma', 'Hma1.2p1_2156F.1_g315420' => 'hma', 'Hma1.2p1_2686F.1_g326940' => 'hma', 'HPP92_006428' => 'vpl', 'HPP92_012069' => 'vpl', 'HPP92_014129' => 'vpl', 'HPP92_014133' => 'vpl', 'HPP92_017315' => 'vpl', 'HPP92_026445' => 'vpl', 'HPP92_026446' => 'vpl', 'Hund00774' => 'sun', 'Hund07682' => 'sun', 'Hund21413' => 'sun', 'Hund23462' => 'sun', 'Hund23463' => 'sun', 'Lalb_Chr03g0027911' => 'lal', 'Lalb_Chr13g0304271' => 'lal', 'Lalb_Chr19g0137471' => 'lal', 'Lalb_Chr22g0350651' => 'lal', 'Lalb_Chr24g0395151' => 'lal', 'Lj1A1231T40' => 'lonja', 'Lj1A221T48' => 'lonja', 'Lj1C924T12' => 'lonja', 'Lj2C993G6' => 'lonja', 'Lj3g0005790' => 'lja', 'Lj3g0015432' => 'lja', 'Lj3g0017722' => 'lja', 'Lj3g0018497' => 'lja', 'Lj4g0025071' => 'lja', 'Lsat_1_v5_gn_1_129680' => 'lsa', 'Lsat_1_v5_gn_2_25321' => 'lsa', 'Lsat_1_v5_gn_2_95461' => 'lsa', 'Lsat_1_v5_gn_4_159620' => 'lsa', 'Lsat_1_v5_gn_6_41301' => 'lsa', 'Lsat_1_v5_gn_6_74660' => 'lsa', 'Lsat_1_v5_gn_7_11520' => 'lsa', 'Lsat_1_v5_gn_9_67680' => 'lsa', 'Manes.04G008300' => 'mes', 'Manes.04G008400' => 'mes', 'Manes.04G026500' => 'mes', 'Manes.10G135300' => 'mes', 'Manes.11G157300' => 'mes', 'Manes.12G074000' => 'mes', 'Manes.16G006200' => 'mes', 'Manes.17G026400' => 'mes', 'Mapoly0024s0086' => 'mpo', 'Mapoly0024s0087' => 'mpo', 'Mapoly0071s0057' => 'mpo', 'Mapoly0204s0012' => 'mpo', 'MBI04_g37681_MAGBIO' => 'mbi', 'MBI05_g17779_MAGBIO' => 'mbi', 'MBI12_g31184_MAGBIO' => 'mbi', 'MBI17_g11083_MAGBIO' => 'mbi', 'MBI18_g03883_MAGBIO' => 'mbi', 'MBI18_g28940_MAGBIO' => 'mbi', 'MCO01G690' => 'mco', 'MD03G1109900' => 'mdo', 'MD03G1134800' => 'mdo', 'MD05G1348000' => 'mdo', 'MD10G1322400' => 'mdo', 'MD11G1123300' => 'mdo', 'MD11G1157600' => 'mdo', 'Medtr2g084875' => 'mtr', 'Medtr2g088130' => 'mtr', 'Medtr4g055310' => 'mtr', 'Medtr4g061070' => 'mtr', 'Medtr4g132250' => 'mtr', 'MELO3C004795.2' => 'cme', 'MELO3C004797.2' => 'cme', 'MELO3C007396.2' => 'cme', 'MELO3C019277.2' => 'cme', 'MELO3C021449.2' => 'cme', 'MELO3C025736.2' => 'cme', 'Migut.D02175' => 'egut', 'Migut.H01573' => 'egut', 'Migut.M01327' => 'egut', 'Migut.N02513' => 'egut', 'MSTRG.14638' => 'ama', 'MSTRG.18632' => 'ama', 'MSTRG.7203' => 'ama', 'Nitab4.5_0000533g0140' => 'nta', 'Nitab4.5_0000888g0150' => 'nta', 'Nitab4.5_0001453g0040' => 'nta', 'Nitab4.5_0002827g0090' => 'nta', 'Nitab4.5_0003082g0040' => 'nta', 'Nitab4.5_0007799g0040' => 'nta', 'Nitab4.5_0008983g0010' => 'nta', 'Nitab4.5_0009017g0020' => 'nta', 'Nn1g02132' => 'nnu', 'Nn1g03492' => 'nnu', 'Nn1g03493' => 'nnu', 'Nn1g03494' => 'nnu', 'Nn1g07164' => 'nnu', 'Nn1g07291' => 'nnu', 'Nn2g10655' => 'nnu', 'Nn2g11652' => 'nnu', 'Nn2g14008' => 'nnu', 'Nn3g17476' => 'nnu', 'Nn3g17477' => 'nnu', 'Nn4g22370' => 'nnu', 'Nn4g25255' => 'nnu', 'Nn5g27755' => 'nnu', 'Nn6g34260' => 'nnu', 'Nn6g35041' => 'nnu', 'Oeu005924.1' => 'oeu', 'Oeu008383.1' => 'oeu', 'Oeu014928.1' => 'oeu', 'Oeu019889.1' => 'oeu', 'Oeu022271.1' => 'oeu', 'Oeu025271.1' => 'oeu', 'Oeu036302.1' => 'oeu', 'Oeu044100.1' => 'oeu', 'Os01g0528300' => 'osa', 'Os03g0286200' => 'osa', 'Os04g0406600' => 'osa', 'Os07g0512000' => 'osa', 'Os07g0694600' => 'osa', 'Os08g0411000' => 'osa', 'Os09g0565700' => 'osa', 'Os09g0566050' => 'osa', 'Os10g0523700' => 'osa', 'Peaxi162Scf00002g00514' => 'pax', 'Peaxi162Scf00047g01817' => 'pax', 'Peaxi162Scf00114g00001' => 'pax', 'Peaxi162Scf00147g00613' => 'pax', 'Peaxi162Scf00389g00425' => 'pax', 'PGR042G1139' => 'pgr', 'PGR042G3273' => 'pgr', 'PGR102G2180' => 'pgr', 'PGR119G0234' => 'pgr', 'PGR119G0668' => 'pgr', 'PGSC0003DMG400007122' => 'stu', 'PGSC0003DMG400016478' => 'stu', 'PGSC0003DMG400025374' => 'stu', 'PGSC0003DMG400026536' => 'stu', 'Phvul.003G079600' => 'pvu', 'Phvul.005G115600' => 'pvu', 'Phvul.005G127100' => 'pvu', 'Phvul.006G149500' => 'pvu', 'Phvul.006G149600' => 'pvu', 'Phvul.011G071800' => 'pvu', 'Phvul.011G090400' => 'pvu', 'Potri.004G013400' => 'ptr', 'Potri.004G188100' => 'ptr', 'Potri.008G195500' => 'ptr', 'Potri.009G148800' => 'ptr', 'Potri.011G004700' => 'ptr', 'Pp3c17_22810' => 'ppa', 'Pp3c18_4480' => 'ppa', 'Pp3c19_13030' => 'ppa', 'Pp3c1_33620' => 'ppa', 'Pp3c2_9380' => 'ppa', 'PRCOL_00001023' => 'pco', 'Prupe.3G216300' => 'ppe', 'Prupe.4G019500' => 'ppe', 'Prupe.6G092500' => 'ppe', 'Prupe.6G119200' => 'ppe', 'Psat0s1945g0080' => 'psa', 'Psat0s4167g0040' => 'psa', 'Psat1g185800' => 'psa', 'Psat4g006440' => 'psa', 'Psat4g006480' => 'psa', 'Psat4g168120' => 'psa', 'Psat5g255680' => 'psa', 'Psat5g261760' => 'psa', 'Psat7g222120' => 'psa', 'PSO063G7252' => 'pso', 'PSO170G4778' => 'pso', 'PSO210G2249' => 'pso', 'PSO339G2411' => 'pso', 'PSO339G2457' => 'pso', 'PSO339G2854' => 'pso', 'PSO339G4288' => 'pso', 'PSO339G4615' => 'pso', 'PSO384G2796' => 'pso', 'PSO384G2940' => 'pso', 'PSO384G4227' => 'pso', 'PSO478G1425' => 'pso', 'PSO541G3863' => 'pso', 'PSO675G0507' => 'pso', 'PSO782G0338' => 'pso', 'PSO832G0644' => 'pso', 'QL01p013664' => 'qlo', 'QL01p036598' => 'qlo', 'QL05p072984' => 'qlo', 'QL08p005768' => 'qlo', 'QL08p032743' => 'qlo', 'QL93p0073_0439' => 'qlo', 'QL93p0073_0444' => 'qlo', 'RcHm_v2.0_Chr5g0002851' => 'rch', 'RcHm_v2.0_Chr5g0055201' => 'rch', 'RcHm_v2.0_Chr5g0061191' => 'rch', 'RcHm_v2.0_Chr7g0203231' => 'rch', 'Rhsim01G0208100' => 'rsi', 'Rhsim01G0208200' => 'rsi', 'Rhsim02G0106500' => 'rsi', 'Rhsim03G0107900' => 'rsi', 'Rhsim06G0163400' => 'rsi', 'Rhsim13G0105200' => 'rsi', 'Sabra04G0006300' => 'sbr', 'Sabra04G0127000' => 'sbr', 'Sabra08G0148700' => 'sbr', 'Sabra09G0117400' => 'sbr', 'SalBow1G3326' => 'sbo', 'SalBow3G3228' => 'sbo', 'SalBow6G1634' => 'sbo', 'SalBow6G3603' => 'sbo', 'SalBow6G5266' => 'sbo', 'SalBow7G2265' => 'sbo', 'SalBow8G0850' => 'sbo', 'SalBow8G2592' => 'sbo', 'Sc05g0009240' => 'sci', 'Sc12g0002300' => 'sci', 'Sc21g0000100' => 'sci', 'Sc21g0004720' => 'sci', 'Sed0002949' => 'sed', 'Sed0004114' => 'sed', 'Sed0004306' => 'sed', 'Sed0006172' => 'sed', 'Sed0008413' => 'sed', 'Sed0013809' => 'sed', 'Sed0019556' => 'sed', 'SEGI_03570' => 'sgi', 'SEGI_07859' => 'sgi', 'SEGI_15042' => 'sgi', 'SEGI_16263' => 'sgi', 'SEGI_16552' => 'sgi', 'SEGI_24331' => 'sgi', 'SEGI_27316' => 'sgi', 'SEGI_29521' => 'sgi', 'SEGI_41342' => 'sgi', 'SGA_v2.0_scaffold27G11617' => 'sas', 'SGA_v2.0_scaffold316G48428' => 'sas', 'SGA_v2.0_scaffold49G18261' => 'sas', 'SGA_v2.0_scaffold7G03831' => 'sas', 'SGA_v2.0_scaffold93G28359' => 'sas', 'SHI02210' => 'shi', 'SHI06028' => 'shi', 'SHI06321' => 'shi', 'SMO111G0012' => 'smo', 'SMO228G0080' => 'smo', 'SMO356G0756' => 'smo', 'Solyc02g080620.3' => 'sly', 'Solyc06g074530.1' => 'sly', 'Solyc11g066890.1' => 'sly', 'Solyc11g072520.3' => 'sly', 'Sopen02g025330' => 'spe', 'Sopen06g031000' => 'spe', 'Sopen09g008240' => 'spe', 'Sopen09g025210' => 'spe', 'Sopen11g026600' => 'spe', 'Sopen11g030170' => 'spe', 'Sp1g10420' => 'spa', 'Sp3g06570' => 'spa', 'Sp4g10660' => 'spa', 'Sp5g16460' => 'spa', 'Sp6g22710' => 'spa', 'TAR365G0112' => 'tar', 'TAR369G0717' => 'tar', 'TAR374G0976' => 'tar', 'TAR623G1128' => 'tar', 'TAR626G1937' => 'tar', 'TAR627G0123' => 'tar', 'TAR628G0305' => 'tar', 'TAR636G1176' => 'tar', 'TAR636G2442' => 'tar', 'THA.LOC104800556' => 'tha', 'THA.LOC104809501' => 'tha', 'THA.LOC104815126' => 'tha', 'THA.LOC104815732' => 'tha', 'THA.LOC104823528' => 'tha', 'Thecc.02G365600' => 'tca', 'Thecc.06G222300' => 'tca', 'Thecc.09G261800' => 'tca', 'Thecc.09G291400' => 'tca', 'Thhalv10003028m.g' => 'esa', 'Thhalv10007886m.g' => 'esa', 'Thhalv10016085m.g' => 'esa', 'Thhalv10016681m.g' => 'esa', 'Thhalv10020951m.g' => 'esa', 'TPR.G15598' => 'tpr', 'TPR.G29305' => 'tpr', 'TPR.G32395' => 'tpr', 'TPR.G36998' => 'tpr', 'TPR.G4227' => 'tpr', 'TWI18G1433' => 'twi', 'TWI31G0755' => 'twi', 'TWI38G0912' => 'twi', 'TWI75G1097' => 'twi', 'TWI75G1619' => 'twi', 'TWI79G1336' => 'twi', 'unitig_0.g943' => 'ugi', 'unitig_0.g944' => 'ugi', 'unitig_22.g6646' => 'ugi', 'unitig_37.g12681' => 'ugi', 'unitig_8.g3290' => 'ugi', 'vmacro03278' => 'vma', 'vmacro12197' => 'vma', 'vmacro14478' => 'vma', 'vmacro15787' => 'vma', 'vmacro15789' => 'vma', 'vmacro15790' => 'vma', 'vmacro15806' => 'vma', 'vmacro22907' => 'vma', 'vmacro22908' => 'vma', 'vmacro22909' => 'vma', 'vmacro23108' => 'vma', 'VMungo0540G0540' => 'vmu', 'VMungo0540G2468' => 'vmu', 'VMungo1080G0390' => 'vmu', 'VMungo1080G1165' => 'vmu', 'VMungo1127G0170' => 'vmu', 'VMungo1127G2099' => 'vmu', 'VMungo1215G3013' => 'vmu', 'Zm00001eb013110' => 'zma', 'Zm00001eb084260' => 'zma', 'Zm00001eb096110' => 'zma', 'Zm00001eb217510' => 'zma', 'Zm00001eb322550' => 'zma', 'Zm00001eb390770' => 'zma', 'Zm00001eb397170' => 'zma', 'Zm00001eb404610' => 'zma', 'Zm00001eb421790' => 'zma' ), 'gf_id' => 'HOM05D000911', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000911' ), 'data_identifier' => 'HOM05D000911', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000911', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27780' => 'bna', 'A03p35380' => 'bna', 'A04p21160' => 'bna', 'A05p40570' => 'bna', 'A06p26900' => 'bna', 'A08p33230' => 'bna', 'A09p65960' => 'bna', 'A10p18290' => 'bna', 'Aa31LG1G12990' => 'aar', 'Aa31LG1G2980' => 'aar', 'Aa31LG4G14320' => 'aar', 'Aa31LG7G11800' => 'aar', 'Aa31sc36G50' => 'aar', 'Aa31sc36G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3721' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5459' => 'aag', 'Actinidia03028' => 'ach', 'Actinidia03753' => 'ach', 'Actinidia04187' => 'ach', 'Actinidia05509' => 'ach', 'Actinidia24180' => 'ach', 'Actinidia26906' => 'ach', 'Actinidia37097' => 'ach', 'Actinidia38249' => 'ach', 'Ah.01g003470' => 'amhyb', 'Ah.01g004580' => 'amhyb', 'Ah.01g014850' => 'amhyb', 'Ah.01g016830' => 'amhyb', 'Ah.14g088000' => 'amhyb', 'AL1G22980' => 'aly', 'AL3G18990' => 'aly', 'AL4G22440' => 'aly', 'AL4G33180' => 'aly', 'AL5G22920' => 'aly', 'AL6G33660' => 'aly', 'AL8G20720' => 'aly', 'Aqoxy1G00935' => 'aox', 'Aqoxy1G02094' => 'aox', 'Aqoxy2G01239' => 'aox', 'Aqoxy4G01870' => 'aox', 'Aqoxy7G00450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.36ZVTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71EM27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5D6C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH3WRE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3NCM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RIM768' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YB5YRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z36GDV' => 'arhy', 'AT1G08250' => 'ath', 'AT1G11790' => 'ath', 'AT2G27820' => 'ath', 'AT3G07630' => 'ath', 'AT3G44720' => 'ath', 'AT5G22630' => 'ath', 'ATR0693G304' => 'atr', 'ATR0794G109' => 'atr', 'ATR0820G120' => 'atr', 'ATR1159G064' => 'atr', 'Atru.chr10.2239' => 'acertr', 'Atru.chr3.3371' => 'acertr', 'Atru.chr6.3202' => 'acertr', 'AUR62006499' => 'cqu', 'AUR62012718' => 'cqu', 'AUR62021938' => 'cqu', 'AUR62023932' => 'cqu', 'AUR62025034' => 'cqu', 'AUR62025035' => 'cqu', 'AUR62038307' => 'cqu', 'AUR62043466' => 'cqu', 'BcaB02g10748' => 'bca', 'BcaB03g13231' => 'bca', 'BcaB03g14689' => 'bca', 'BcaB05g22716' => 'bca', 'BcaB06g28172' => 'bca', 'BcaB08g36413' => 'bca', 'BcaC01g02186' => 'bca', 'BcaC01g04272' => 'bca', 'BcaC02g08080' => 'bca', 'BcaC02g08227' => 'bca', 'BcaC03g13901' => 'bca', 'BcaC04g19593' => 'bca', 'BcaC04g20874' => 'bca', 'BcaC05g29557' => 'bca', 'BcaC06g35505' => 'bca', 'BcaC07g41954' => 'bca', 'BcaC07g41955' => 'bca', 'BcaC07g41956' => 'bca', 'BcaC07g42519' => 'bca', 'BcaC07g42520' => 'bca', 'BcaC07g42523' => 'bca', 'BcaC07g42524' => 'bca', 'BcaC07g42525' => 'bca', 'BcaC08g47480' => 'bca', 'BcaC08g47481' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00530' => 'bna', 'BolC2t07178H' => 'bol', 'BolC3t16567H' => 'bol', 'BolC4t27234H' => 'bol', 'BolC5t29728H' => 'bol', 'BolC5t34622H' => 'bol', 'BolC6t40321H' => 'bol', 'BolC7t42028H' => 'bol', 'BolC8t49125H' => 'bol', 'BolC8t52538H' => 'bol', 'BolC8t52539H' => 'bol', 'BolC9t56681H' => 'bol', 'BolC9t58266H' => 'bol', 'BolSC21t60294H' => 'bol', 'BraA02t05670Z' => 'bra', 'BraA03t12716Z' => 'bra', 'BraA04t17685Z' => 'bra', 'BraA05t22788Z' => 'bra', 'BraA06t24032Z' => 'bra', 'BraA06t25625Z' => 'bra', 'BraA07t27930Z' => 'bra', 'BraA08t35242Z' => 'bra', 'BraA09t38609Z' => 'bra', 'BraA10t43905Z' => 'bra', 'C02p11060' => 'bna', 'C03p42990' => 'bna', 'C03p67310' => 'bna', 'C04p56990' => 'bna', 'C04p58660' => 'bna', 'C05p09890' => 'bna', 'C05p59680' => 'bna', 'C06p19830' => 'bna', 'C06p53040' => 'bna', 'C07p15230' => 'bna', 'C08p50070' => 'bna', 'C08p50090' => 'bna', 'C09p38330' => 'bna', 'C09p53940' => 'bna', 'CAN.G1014.1' => 'can', 'CAN.G644.30' => 'can', 'CAN.G84.47' => 'can', 'CAN.G919.8' => 'can', 'CANSAT54G0113' => 'cansat', 'CANSAT54G1286' => 'cansat', 'CANSAT64G1020' => 'cansat', 'CARHR008080' => 'chi', 'CARHR008090' => 'chi', 'CARHR012130' => 'chi', 'CARHR038390' => 'chi', 'CARHR082330' => 'chi', 'CARHR120520' => 'chi', 'CARHR151470' => 'chi', 'CARHR190950' => 'chi', 'Carub.0001s0760' => 'cru', 'Carub.0001s1146' => 'cru', 'Carub.0003s0721' => 'cru', 'Carub.0004s0858' => 'cru', 'Carub.0005s1040' => 'cru', 'Carub.0006s2035' => 'cru', 'Carub.0015s0005' => 'cru', 'Ca_01607_v3' => 'car', 'Ca_01677_v3' => 'car', 'Ca_06087_v3' => 'car', 'Ca_19238_v3' => 'car', 'Ca_19373_v3' => 'car', 'Ca_21079_v3' => 'car', 'CBR_g54016' => 'cbr', 'CBR_g54018' => 'cbr', 'CBR_g54020' => 'cbr', 'Cc01_g09780' => 'ccan', 'Cc01_g11680' => 'ccan', 'Cc02_g15610' => 'ccan', 'Cc05_g04350' => 'ccan', 'Cc09_g01580' => 'ccan', 'CDE01G0795' => 'cde', 'CDE02G2024' => 'cde', 'CDE02G2260' => 'cde', 'CDE02G4561' => 'cde', 'CDE05G2733' => 'cde', 'CDE05G3422' => 'cde', 'CDE06G2003' => 'cde', 'CDE08G0576' => 'cde', 'CDE09G0048' => 'cde', 'CDE11G0805' => 'cde', 'Cfa003644' => 'cfa', 'Cfa006290' => 'cfa', 'Cfa010080' => 'cfa', 'Cfa011376' => 'cfa', 'Cfa011576' => 'cfa', 'Cfa011577' => 'cfa', 'Cfa014389' => 'cfa', 'Ciclev10006044m.g' => 'ccl', 'Ciclev10006954m.g' => 'ccl', 'Ciclev10015131m.g' => 'ccl', 'Ciclev10015580m.g' => 'ccl', 'Ciclev10028359m.g' => 'ccl', 'Ciclev10028573m.g' => 'ccl', 'CiPaw.03G159300' => 'cil', 'CiPaw.04G115100' => 'cil', 'CiPaw.09G092800' => 'cil', 'CiPaw.10G071800' => 'cil', 'CiPaw.13G105800' => 'cil', 'CiPaw.13G141000' => 'cil', 'CiPaw.14G103400' => 'cil', 'ClCG01G012700' => 'cla', 'ClCG01G012720' => 'cla', 'ClCG01G021920' => 'cla', 'ClCG02G008870' => 'cla', 'ClCG02G020840' => 'cla', 'ClCG02G021930' => 'cla', 'COL.COLO4_19302' => 'col', 'COL.COLO4_25262' => 'col', 'COL.COLO4_31788' => 'col', 'Cpa.g.c34684' => 'cpa', 'Cpa.g.c36520.1' => 'cpa', 'Cpa.g.c45626' => 'cpa', 'Cpa.g.sc121.17' => 'cpa', 'Cpa.g.sc13.22' => 'cpa', 'Cpa.g.sc87.88' => 'cpa', 'Cre06.g261800' => 'cre', 'CsaV3_1G014500' => 'csa', 'CsaV3_1G014510' => 'csa', 'CsaV3_2G034880' => 'csa', 'CsaV3_6G014760' => 'csa', 'CsaV3_6G021500' => 'csa', 'CsaV3_6G048980' => 'csa', 'CSS0002511' => 'camsi', 'CSS0007556' => 'camsi', 'CSS0008532' => 'camsi', 'CSS0009709' => 'camsi', 'CSS0010486' => 'camsi', 'CSS0016768' => 'camsi', 'CSS0023512' => 'camsi', 'CSS0025341' => 'camsi', 'CSS0027999' => 'camsi', 'CSS0028944' => 'camsi', 'CSS0032292' => 'camsi', 'CSS0032464' => 'camsi', 'CSS0037153' => 'camsi', 'CSS0039256' => 'camsi', 'CSS0048392' => 'camsi', 'CSS0050458' => 'camsi', 'DCAR_004224' => 'dca', 'DCAR_006147' => 'dca', 'DCAR_006465' => 'dca', 'DCAR_008159' => 'dca', 'DCAR_012164' => 'dca', 'DCAR_019764' => 'dca', 'Dinv05418' => 'din', 'Dinv10839' => 'din', 'Dinv12521' => 'din', 'Dinv13900' => 'din', 'Dinv29426' => 'din', 'Duzib150G0263' => 'dzi', 'Duzib168G1178' => 'dzi', 'Duzib168G1924' => 'dzi', 'Duzib170G0299' => 'dzi', 'Duzib170G0813' => 'dzi', 'Duzib235G1128' => 'dzi', 'Duzib248G1060' => 'dzi', 'ECA232G1910' => 'eca', 'ECA233G4621' => 'eca', 'ECA238G1216' => 'eca', 'ECA238G1784' => 'eca', 'ECA248G1242' => 'eca', 'EL10Ac8g20071' => 'bvu', 'EL10Ac9g21086' => 'bvu', 'EL10Ac9g22407' => 'bvu', 'EL10Ac9g22412' => 'bvu', 'Eucgr.A01119' => 'egr', 'Eucgr.E04043' => 'egr', 'Eucgr.J00428' => 'egr', 'Eucgr.J00958' => 'egr', 'FAN11G3091' => 'fan', 'FAN11G3651' => 'fan', 'FAN16G2566' => 'fan', 'FAN21G3155' => 'fan', 'FAN21G3400' => 'fan', 'FAN21G3543' => 'fan', 'FAN25G0234' => 'fan', 'FAN25G1422' => 'fan', 'FAN25G3392' => 'fan', 'FvH4_3g01940' => 'fve', 'FvH4_3g29870' => 'fve', 'FvH4_3g33680' => 'fve', 'Glyma.09G004200' => 'gma', 'Glyma.11G151288' => 'gma', 'Glyma.11G189100' => 'gma', 'Glyma.12G072500' => 'gma', 'Glyma.12G085500' => 'gma', 'Glyma.12G181800' => 'gma', 'Glyma.12G193000' => 'gma', 'Glyma.13G309300' => 'gma', 'Glyma.13G319000' => 'gma', 'Glyma.17G012600' => 'gma', 'Gohir.A06G148600' => 'ghi', 'Gohir.A07G115800' => 'ghi', 'Gohir.A08G003600' => 'ghi', 'Gohir.A09G093300' => 'ghi', 'Gohir.A09G105400' => 'ghi', 'Gohir.A09G105500' => 'ghi', 'Gohir.D06G154600' => 'ghi', 'Gohir.D07G120200' => 'ghi', 'Gohir.D08G013900' => 'ghi', 'Gohir.D09G093100' => 'ghi', 'Gohir.D09G102200' => 'ghi', 'Gohir.D09G102300' => 'ghi', 'Gorai.001G129400' => 'gra', 'Gorai.004G008200' => 'gra', 'Gorai.006G109800' => 'gra', 'Gorai.006G119500' => 'gra', 'Gorai.006G121300' => 'gra', 'Gorai.010G180700' => 'gra', 'GSVIVG01012716001' => 'vvi', 'GSVIVG01025118001' => 'vvi', 'GSVIVG01030439001' => 'vvi', 'GSVIVG01031397001' => 'vvi', 'HanXRQChr01g0004201' => 'han', 'HanXRQChr02g0054941' => 'han', 'HanXRQChr05g0141811' => 'han', 'HanXRQChr07g0197751' => 'han', 'HanXRQChr11g0346691' => 'han', 'HanXRQChr13g0396971' => 'han', 'HanXRQChr14g0432951' => 'han', 'HanXRQChr14g0452001' => 'han', 'HanXRQChr15g0496681' => 'han', 'HanXRQChr17g0557491' => 'han', 'HanXRQChr17g0557501' => 'han', 'Haze_06809' => 'cav', 'Haze_12852' => 'cav', 'Haze_15850' => 'cav', 'Haze_23446' => 'cav', 'Haze_23942' => 'cav', 'Haze_23943' => 'cav', 'Hma1.2p1_0091F.1_g046450' => 'hma', 'Hma1.2p1_0128F.1_g059910' => 'hma', 'Hma1.2p1_0249F.1_g102260' => 'hma', 'Hma1.2p1_0453F.1_g156190' => 'hma', 'Hma1.2p1_0695F.1_g204380' => 'hma', 'Hma1.2p1_0749F.1_g212650' => 'hma', 'Hma1.2p1_2156F.1_g315420' => 'hma', 'Hma1.2p1_2686F.1_g326940' => 'hma', 'HPP92_006428' => 'vpl', 'HPP92_012069' => 'vpl', 'HPP92_014129' => 'vpl', 'HPP92_014133' => 'vpl', 'HPP92_017315' => 'vpl', 'HPP92_026445' => 'vpl', 'HPP92_026446' => 'vpl', 'Hund00774' => 'sun', 'Hund07682' => 'sun', 'Hund21413' => 'sun', 'Hund23462' => 'sun', 'Hund23463' => 'sun', 'Lalb_Chr03g0027911' => 'lal', 'Lalb_Chr13g0304271' => 'lal', 'Lalb_Chr19g0137471' => 'lal', 'Lalb_Chr22g0350651' => 'lal', 'Lalb_Chr24g0395151' => 'lal', 'Lj1A1231T40' => 'lonja', 'Lj1A221T48' => 'lonja', 'Lj1C924T12' => 'lonja', 'Lj2C993G6' => 'lonja', 'Lj3g0005790' => 'lja', 'Lj3g0015432' => 'lja', 'Lj3g0017722' => 'lja', 'Lj3g0018497' => 'lja', 'Lj4g0025071' => 'lja', 'Lsat_1_v5_gn_1_129680' => 'lsa', 'Lsat_1_v5_gn_2_25321' => 'lsa', 'Lsat_1_v5_gn_2_95461' => 'lsa', 'Lsat_1_v5_gn_4_159620' => 'lsa', 'Lsat_1_v5_gn_6_41301' => 'lsa', 'Lsat_1_v5_gn_6_74660' => 'lsa', 'Lsat_1_v5_gn_7_11520' => 'lsa', 'Lsat_1_v5_gn_9_67680' => 'lsa', 'Manes.04G008300' => 'mes', 'Manes.04G008400' => 'mes', 'Manes.04G026500' => 'mes', 'Manes.10G135300' => 'mes', 'Manes.11G157300' => 'mes', 'Manes.12G074000' => 'mes', 'Manes.16G006200' => 'mes', 'Manes.17G026400' => 'mes', 'Mapoly0024s0086' => 'mpo', 'Mapoly0024s0087' => 'mpo', 'Mapoly0071s0057' => 'mpo', 'Mapoly0204s0012' => 'mpo', 'MBI04_g37681_MAGBIO' => 'mbi', 'MBI05_g17779_MAGBIO' => 'mbi', 'MBI12_g31184_MAGBIO' => 'mbi', 'MBI17_g11083_MAGBIO' => 'mbi', 'MBI18_g03883_MAGBIO' => 'mbi', 'MBI18_g28940_MAGBIO' => 'mbi', 'MCO01G690' => 'mco', 'MD03G1109900' => 'mdo', 'MD03G1134800' => 'mdo', 'MD05G1348000' => 'mdo', 'MD10G1322400' => 'mdo', 'MD11G1123300' => 'mdo', 'MD11G1157600' => 'mdo', 'Medtr2g084875' => 'mtr', 'Medtr2g088130' => 'mtr', 'Medtr4g055310' => 'mtr', 'Medtr4g061070' => 'mtr', 'Medtr4g132250' => 'mtr', 'MELO3C004795.2' => 'cme', 'MELO3C004797.2' => 'cme', 'MELO3C007396.2' => 'cme', 'MELO3C019277.2' => 'cme', 'MELO3C021449.2' => 'cme', 'MELO3C025736.2' => 'cme', 'Migut.D02175' => 'egut', 'Migut.H01573' => 'egut', 'Migut.M01327' => 'egut', 'Migut.N02513' => 'egut', 'MSTRG.14638' => 'ama', 'MSTRG.18632' => 'ama', 'MSTRG.7203' => 'ama', 'Nitab4.5_0000533g0140' => 'nta', 'Nitab4.5_0000888g0150' => 'nta', 'Nitab4.5_0001453g0040' => 'nta', 'Nitab4.5_0002827g0090' => 'nta', 'Nitab4.5_0003082g0040' => 'nta', 'Nitab4.5_0007799g0040' => 'nta', 'Nitab4.5_0008983g0010' => 'nta', 'Nitab4.5_0009017g0020' => 'nta', 'Nn1g02132' => 'nnu', 'Nn1g03492' => 'nnu', 'Nn1g03493' => 'nnu', 'Nn1g03494' => 'nnu', 'Nn1g07164' => 'nnu', 'Nn1g07291' => 'nnu', 'Nn2g10655' => 'nnu', 'Nn2g11652' => 'nnu', 'Nn2g14008' => 'nnu', 'Nn3g17476' => 'nnu', 'Nn3g17477' => 'nnu', 'Nn4g22370' => 'nnu', 'Nn4g25255' => 'nnu', 'Nn5g27755' => 'nnu', 'Nn6g34260' => 'nnu', 'Nn6g35041' => 'nnu', 'Oeu005924.1' => 'oeu', 'Oeu008383.1' => 'oeu', 'Oeu014928.1' => 'oeu', 'Oeu019889.1' => 'oeu', 'Oeu022271.1' => 'oeu', 'Oeu025271.1' => 'oeu', 'Oeu036302.1' => 'oeu', 'Oeu044100.1' => 'oeu', 'Os01g0528300' => 'osa', 'Os03g0286200' => 'osa', 'Os04g0406600' => 'osa', 'Os07g0512000' => 'osa', 'Os07g0694600' => 'osa', 'Os08g0411000' => 'osa', 'Os09g0565700' => 'osa', 'Os09g0566050' => 'osa', 'Os10g0523700' => 'osa', 'Peaxi162Scf00002g00514' => 'pax', 'Peaxi162Scf00047g01817' => 'pax', 'Peaxi162Scf00114g00001' => 'pax', 'Peaxi162Scf00147g00613' => 'pax', 'Peaxi162Scf00389g00425' => 'pax', 'PGR042G1139' => 'pgr', 'PGR042G3273' => 'pgr', 'PGR102G2180' => 'pgr', 'PGR119G0234' => 'pgr', 'PGR119G0668' => 'pgr', 'PGSC0003DMG400007122' => 'stu', 'PGSC0003DMG400016478' => 'stu', 'PGSC0003DMG400025374' => 'stu', 'PGSC0003DMG400026536' => 'stu', 'Phvul.003G079600' => 'pvu', 'Phvul.005G115600' => 'pvu', 'Phvul.005G127100' => 'pvu', 'Phvul.006G149500' => 'pvu', 'Phvul.006G149600' => 'pvu', 'Phvul.011G071800' => 'pvu', 'Phvul.011G090400' => 'pvu', 'Potri.004G013400' => 'ptr', 'Potri.004G188100' => 'ptr', 'Potri.008G195500' => 'ptr', 'Potri.009G148800' => 'ptr', 'Potri.011G004700' => 'ptr', 'Pp3c17_22810' => 'ppa', 'Pp3c18_4480' => 'ppa', 'Pp3c19_13030' => 'ppa', 'Pp3c1_33620' => 'ppa', 'Pp3c2_9380' => 'ppa', 'PRCOL_00001023' => 'pco', 'Prupe.3G216300' => 'ppe', 'Prupe.4G019500' => 'ppe', 'Prupe.6G092500' => 'ppe', 'Prupe.6G119200' => 'ppe', 'Psat0s1945g0080' => 'psa', 'Psat0s4167g0040' => 'psa', 'Psat1g185800' => 'psa', 'Psat4g006440' => 'psa', 'Psat4g006480' => 'psa', 'Psat4g168120' => 'psa', 'Psat5g255680' => 'psa', 'Psat5g261760' => 'psa', 'Psat7g222120' => 'psa', 'PSO063G7252' => 'pso', 'PSO170G4778' => 'pso', 'PSO210G2249' => 'pso', 'PSO339G2411' => 'pso', 'PSO339G2457' => 'pso', 'PSO339G2854' => 'pso', 'PSO339G4288' => 'pso', 'PSO339G4615' => 'pso', 'PSO384G2796' => 'pso', 'PSO384G2940' => 'pso', 'PSO384G4227' => 'pso', 'PSO478G1425' => 'pso', 'PSO541G3863' => 'pso', 'PSO675G0507' => 'pso', 'PSO782G0338' => 'pso', 'PSO832G0644' => 'pso', 'QL01p013664' => 'qlo', 'QL01p036598' => 'qlo', 'QL05p072984' => 'qlo', 'QL08p005768' => 'qlo', 'QL08p032743' => 'qlo', 'QL93p0073_0439' => 'qlo', 'QL93p0073_0444' => 'qlo', 'RcHm_v2.0_Chr5g0002851' => 'rch', 'RcHm_v2.0_Chr5g0055201' => 'rch', 'RcHm_v2.0_Chr5g0061191' => 'rch', 'RcHm_v2.0_Chr7g0203231' => 'rch', 'Rhsim01G0208100' => 'rsi', 'Rhsim01G0208200' => 'rsi', 'Rhsim02G0106500' => 'rsi', 'Rhsim03G0107900' => 'rsi', 'Rhsim06G0163400' => 'rsi', 'Rhsim13G0105200' => 'rsi', 'Sabra04G0006300' => 'sbr', 'Sabra04G0127000' => 'sbr', 'Sabra08G0148700' => 'sbr', 'Sabra09G0117400' => 'sbr', 'SalBow1G3326' => 'sbo', 'SalBow3G3228' => 'sbo', 'SalBow6G1634' => 'sbo', 'SalBow6G3603' => 'sbo', 'SalBow6G5266' => 'sbo', 'SalBow7G2265' => 'sbo', 'SalBow8G0850' => 'sbo', 'SalBow8G2592' => 'sbo', 'Sc05g0009240' => 'sci', 'Sc12g0002300' => 'sci', 'Sc21g0000100' => 'sci', 'Sc21g0004720' => 'sci', 'Sed0002949' => 'sed', 'Sed0004114' => 'sed', 'Sed0004306' => 'sed', 'Sed0006172' => 'sed', 'Sed0008413' => 'sed', 'Sed0013809' => 'sed', 'Sed0019556' => 'sed', 'SEGI_03570' => 'sgi', 'SEGI_07859' => 'sgi', 'SEGI_15042' => 'sgi', 'SEGI_16263' => 'sgi', 'SEGI_16552' => 'sgi', 'SEGI_24331' => 'sgi', 'SEGI_27316' => 'sgi', 'SEGI_29521' => 'sgi', 'SEGI_41342' => 'sgi', 'SGA_v2.0_scaffold27G11617' => 'sas', 'SGA_v2.0_scaffold316G48428' => 'sas', 'SGA_v2.0_scaffold49G18261' => 'sas', 'SGA_v2.0_scaffold7G03831' => 'sas', 'SGA_v2.0_scaffold93G28359' => 'sas', 'SHI02210' => 'shi', 'SHI06028' => 'shi', 'SHI06321' => 'shi', 'SMO111G0012' => 'smo', 'SMO228G0080' => 'smo', 'SMO356G0756' => 'smo', 'Solyc02g080620.3' => 'sly', 'Solyc06g074530.1' => 'sly', 'Solyc11g066890.1' => 'sly', 'Solyc11g072520.3' => 'sly', 'Sopen02g025330' => 'spe', 'Sopen06g031000' => 'spe', 'Sopen09g008240' => 'spe', 'Sopen09g025210' => 'spe', 'Sopen11g026600' => 'spe', 'Sopen11g030170' => 'spe', 'Sp1g10420' => 'spa', 'Sp3g06570' => 'spa', 'Sp4g10660' => 'spa', 'Sp5g16460' => 'spa', 'Sp6g22710' => 'spa', 'TAR365G0112' => 'tar', 'TAR369G0717' => 'tar', 'TAR374G0976' => 'tar', 'TAR623G1128' => 'tar', 'TAR626G1937' => 'tar', 'TAR627G0123' => 'tar', 'TAR628G0305' => 'tar', 'TAR636G1176' => 'tar', 'TAR636G2442' => 'tar', 'THA.LOC104800556' => 'tha', 'THA.LOC104809501' => 'tha', 'THA.LOC104815126' => 'tha', 'THA.LOC104815732' => 'tha', 'THA.LOC104823528' => 'tha', 'Thecc.02G365600' => 'tca', 'Thecc.06G222300' => 'tca', 'Thecc.09G261800' => 'tca', 'Thecc.09G291400' => 'tca', 'Thhalv10003028m.g' => 'esa', 'Thhalv10007886m.g' => 'esa', 'Thhalv10016085m.g' => 'esa', 'Thhalv10016681m.g' => 'esa', 'Thhalv10020951m.g' => 'esa', 'TPR.G15598' => 'tpr', 'TPR.G29305' => 'tpr', 'TPR.G32395' => 'tpr', 'TPR.G36998' => 'tpr', 'TPR.G4227' => 'tpr', 'TWI18G1433' => 'twi', 'TWI31G0755' => 'twi', 'TWI38G0912' => 'twi', 'TWI75G1097' => 'twi', 'TWI75G1619' => 'twi', 'TWI79G1336' => 'twi', 'unitig_0.g943' => 'ugi', 'unitig_0.g944' => 'ugi', 'unitig_22.g6646' => 'ugi', 'unitig_37.g12681' => 'ugi', 'unitig_8.g3290' => 'ugi', 'vmacro03278' => 'vma', 'vmacro12197' => 'vma', 'vmacro14478' => 'vma', 'vmacro15787' => 'vma', 'vmacro15789' => 'vma', 'vmacro15790' => 'vma', 'vmacro15806' => 'vma', 'vmacro22907' => 'vma', 'vmacro22908' => 'vma', 'vmacro22909' => 'vma', 'vmacro23108' => 'vma', 'VMungo0540G0540' => 'vmu', 'VMungo0540G2468' => 'vmu', 'VMungo1080G0390' => 'vmu', 'VMungo1080G1165' => 'vmu', 'VMungo1127G0170' => 'vmu', 'VMungo1127G2099' => 'vmu', 'VMungo1215G3013' => 'vmu', 'Zm00001eb013110' => 'zma', 'Zm00001eb084260' => 'zma', 'Zm00001eb096110' => 'zma', 'Zm00001eb217510' => 'zma', 'Zm00001eb322550' => 'zma', 'Zm00001eb390770' => 'zma', 'Zm00001eb397170' => 'zma', 'Zm00001eb404610' => 'zma', 'Zm00001eb421790' => 'zma' ) $gf_id = 'HOM05D000911' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000911' ) $data_identifier = 'HOM05D000911' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 16, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 5, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 6, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 8, 'nnu' => (int) 16, 'oeu' => (int) 8, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 5, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 16, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421790' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000911', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27780' => 'bna', 'A03p35380' => 'bna', 'A04p21160' => 'bna', 'A05p40570' => 'bna', 'A06p26900' => 'bna', 'A08p33230' => 'bna', 'A09p65960' => 'bna', 'A10p18290' => 'bna', 'Aa31LG1G12990' => 'aar', 'Aa31LG1G2980' => 'aar', 'Aa31LG4G14320' => 'aar', 'Aa31LG7G11800' => 'aar', 'Aa31sc36G50' => 'aar', 'Aa31sc36G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3721' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5459' => 'aag', 'Actinidia03028' => 'ach', 'Actinidia03753' => 'ach', 'Actinidia04187' => 'ach', 'Actinidia05509' => 'ach', 'Actinidia24180' => 'ach', 'Actinidia26906' => 'ach', 'Actinidia37097' => 'ach', 'Actinidia38249' => 'ach', 'Ah.01g003470' => 'amhyb', 'Ah.01g004580' => 'amhyb', 'Ah.01g014850' => 'amhyb', 'Ah.01g016830' => 'amhyb', 'Ah.14g088000' => 'amhyb', 'AL1G22980' => 'aly', 'AL3G18990' => 'aly', 'AL4G22440' => 'aly', 'AL4G33180' => 'aly', 'AL5G22920' => 'aly', 'AL6G33660' => 'aly', 'AL8G20720' => 'aly', 'Aqoxy1G00935' => 'aox', 'Aqoxy1G02094' => 'aox', 'Aqoxy2G01239' => 'aox', 'Aqoxy4G01870' => 'aox', 'Aqoxy7G00450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.36ZVTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71EM27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5D6C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH3WRE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3NCM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RIM768' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YB5YRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z36GDV' => 'arhy', 'AT1G08250' => 'ath', 'AT1G11790' => 'ath', 'AT2G27820' => 'ath', 'AT3G07630' => 'ath', 'AT3G44720' => 'ath', 'AT5G22630' => 'ath', 'ATR0693G304' => 'atr', 'ATR0794G109' => 'atr', 'ATR0820G120' => 'atr', 'ATR1159G064' => 'atr', 'Atru.chr10.2239' => 'acertr', 'Atru.chr3.3371' => 'acertr', 'Atru.chr6.3202' => 'acertr', 'AUR62006499' => 'cqu', 'AUR62012718' => 'cqu', 'AUR62021938' => 'cqu', 'AUR62023932' => 'cqu', 'AUR62025034' => 'cqu', 'AUR62025035' => 'cqu', 'AUR62038307' => 'cqu', 'AUR62043466' => 'cqu', 'BcaB02g10748' => 'bca', 'BcaB03g13231' => 'bca', 'BcaB03g14689' => 'bca', 'BcaB05g22716' => 'bca', 'BcaB06g28172' => 'bca', 'BcaB08g36413' => 'bca', 'BcaC01g02186' => 'bca', 'BcaC01g04272' => 'bca', 'BcaC02g08080' => 'bca', 'BcaC02g08227' => 'bca', 'BcaC03g13901' => 'bca', 'BcaC04g19593' => 'bca', 'BcaC04g20874' => 'bca', 'BcaC05g29557' => 'bca', 'BcaC06g35505' => 'bca', 'BcaC07g41954' => 'bca', 'BcaC07g41955' => 'bca', 'BcaC07g41956' => 'bca', 'BcaC07g42519' => 'bca', 'BcaC07g42520' => 'bca', 'BcaC07g42523' => 'bca', 'BcaC07g42524' => 'bca', 'BcaC07g42525' => 'bca', 'BcaC08g47480' => 'bca', 'BcaC08g47481' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00530' => 'bna', 'BolC2t07178H' => 'bol', 'BolC3t16567H' => 'bol', 'BolC4t27234H' => 'bol', 'BolC5t29728H' => 'bol', 'BolC5t34622H' => 'bol', 'BolC6t40321H' => 'bol', 'BolC7t42028H' => 'bol', 'BolC8t49125H' => 'bol', 'BolC8t52538H' => 'bol', 'BolC8t52539H' => 'bol', 'BolC9t56681H' => 'bol', 'BolC9t58266H' => 'bol', 'BolSC21t60294H' => 'bol', 'BraA02t05670Z' => 'bra', 'BraA03t12716Z' => 'bra', 'BraA04t17685Z' => 'bra', 'BraA05t22788Z' => 'bra', 'BraA06t24032Z' => 'bra', 'BraA06t25625Z' => 'bra', 'BraA07t27930Z' => 'bra', 'BraA08t35242Z' => 'bra', 'BraA09t38609Z' => 'bra', 'BraA10t43905Z' => 'bra', 'C02p11060' => 'bna', 'C03p42990' => 'bna', 'C03p67310' => 'bna', 'C04p56990' => 'bna', 'C04p58660' => 'bna', 'C05p09890' => 'bna', 'C05p59680' => 'bna', 'C06p19830' => 'bna', 'C06p53040' => 'bna', 'C07p15230' => 'bna', 'C08p50070' => 'bna', 'C08p50090' => 'bna', 'C09p38330' => 'bna', 'C09p53940' => 'bna', 'CAN.G1014.1' => 'can', 'CAN.G644.30' => 'can', 'CAN.G84.47' => 'can', 'CAN.G919.8' => 'can', 'CANSAT54G0113' => 'cansat', 'CANSAT54G1286' => 'cansat', 'CANSAT64G1020' => 'cansat', 'CARHR008080' => 'chi', 'CARHR008090' => 'chi', 'CARHR012130' => 'chi', 'CARHR038390' => 'chi', 'CARHR082330' => 'chi', 'CARHR120520' => 'chi', 'CARHR151470' => 'chi', 'CARHR190950' => 'chi', 'Carub.0001s0760' => 'cru', 'Carub.0001s1146' => 'cru', 'Carub.0003s0721' => 'cru', 'Carub.0004s0858' => 'cru', 'Carub.0005s1040' => 'cru', 'Carub.0006s2035' => 'cru', 'Carub.0015s0005' => 'cru', 'Ca_01607_v3' => 'car', 'Ca_01677_v3' => 'car', 'Ca_06087_v3' => 'car', 'Ca_19238_v3' => 'car', 'Ca_19373_v3' => 'car', 'Ca_21079_v3' => 'car', 'CBR_g54016' => 'cbr', 'CBR_g54018' => 'cbr', 'CBR_g54020' => 'cbr', 'Cc01_g09780' => 'ccan', 'Cc01_g11680' => 'ccan', 'Cc02_g15610' => 'ccan', 'Cc05_g04350' => 'ccan', 'Cc09_g01580' => 'ccan', 'CDE01G0795' => 'cde', 'CDE02G2024' => 'cde', 'CDE02G2260' => 'cde', 'CDE02G4561' => 'cde', 'CDE05G2733' => 'cde', 'CDE05G3422' => 'cde', 'CDE06G2003' => 'cde', 'CDE08G0576' => 'cde', 'CDE09G0048' => 'cde', 'CDE11G0805' => 'cde', 'Cfa003644' => 'cfa', 'Cfa006290' => 'cfa', 'Cfa010080' => 'cfa', 'Cfa011376' => 'cfa', 'Cfa011576' => 'cfa', 'Cfa011577' => 'cfa', 'Cfa014389' => 'cfa', 'Ciclev10006044m.g' => 'ccl', 'Ciclev10006954m.g' => 'ccl', 'Ciclev10015131m.g' => 'ccl', 'Ciclev10015580m.g' => 'ccl', 'Ciclev10028359m.g' => 'ccl', 'Ciclev10028573m.g' => 'ccl', 'CiPaw.03G159300' => 'cil', 'CiPaw.04G115100' => 'cil', 'CiPaw.09G092800' => 'cil', 'CiPaw.10G071800' => 'cil', 'CiPaw.13G105800' => 'cil', 'CiPaw.13G141000' => 'cil', 'CiPaw.14G103400' => 'cil', 'ClCG01G012700' => 'cla', 'ClCG01G012720' => 'cla', 'ClCG01G021920' => 'cla', 'ClCG02G008870' => 'cla', 'ClCG02G020840' => 'cla', 'ClCG02G021930' => 'cla', 'COL.COLO4_19302' => 'col', 'COL.COLO4_25262' => 'col', 'COL.COLO4_31788' => 'col', 'Cpa.g.c34684' => 'cpa', 'Cpa.g.c36520.1' => 'cpa', 'Cpa.g.c45626' => 'cpa', 'Cpa.g.sc121.17' => 'cpa', 'Cpa.g.sc13.22' => 'cpa', 'Cpa.g.sc87.88' => 'cpa', 'Cre06.g261800' => 'cre', 'CsaV3_1G014500' => 'csa', 'CsaV3_1G014510' => 'csa', 'CsaV3_2G034880' => 'csa', 'CsaV3_6G014760' => 'csa', 'CsaV3_6G021500' => 'csa', 'CsaV3_6G048980' => 'csa', 'CSS0002511' => 'camsi', 'CSS0007556' => 'camsi', 'CSS0008532' => 'camsi', 'CSS0009709' => 'camsi', 'CSS0010486' => 'camsi', 'CSS0016768' => 'camsi', 'CSS0023512' => 'camsi', 'CSS0025341' => 'camsi', 'CSS0027999' => 'camsi', 'CSS0028944' => 'camsi', 'CSS0032292' => 'camsi', 'CSS0032464' => 'camsi', 'CSS0037153' => 'camsi', 'CSS0039256' => 'camsi', 'CSS0048392' => 'camsi', 'CSS0050458' => 'camsi', 'DCAR_004224' => 'dca', 'DCAR_006147' => 'dca', 'DCAR_006465' => 'dca', 'DCAR_008159' => 'dca', 'DCAR_012164' => 'dca', 'DCAR_019764' => 'dca', 'Dinv05418' => 'din', 'Dinv10839' => 'din', 'Dinv12521' => 'din', 'Dinv13900' => 'din', 'Dinv29426' => 'din', 'Duzib150G0263' => 'dzi', 'Duzib168G1178' => 'dzi', 'Duzib168G1924' => 'dzi', 'Duzib170G0299' => 'dzi', 'Duzib170G0813' => 'dzi', 'Duzib235G1128' => 'dzi', 'Duzib248G1060' => 'dzi', 'ECA232G1910' => 'eca', 'ECA233G4621' => 'eca', 'ECA238G1216' => 'eca', 'ECA238G1784' => 'eca', 'ECA248G1242' => 'eca', 'EL10Ac8g20071' => 'bvu', 'EL10Ac9g21086' => 'bvu', 'EL10Ac9g22407' => 'bvu', 'EL10Ac9g22412' => 'bvu', 'Eucgr.A01119' => 'egr', 'Eucgr.E04043' => 'egr', 'Eucgr.J00428' => 'egr', 'Eucgr.J00958' => 'egr', 'FAN11G3091' => 'fan', 'FAN11G3651' => 'fan', 'FAN16G2566' => 'fan', 'FAN21G3155' => 'fan', 'FAN21G3400' => 'fan', 'FAN21G3543' => 'fan', 'FAN25G0234' => 'fan', 'FAN25G1422' => 'fan', 'FAN25G3392' => 'fan', 'FvH4_3g01940' => 'fve', 'FvH4_3g29870' => 'fve', 'FvH4_3g33680' => 'fve', 'Glyma.09G004200' => 'gma', 'Glyma.11G151288' => 'gma', 'Glyma.11G189100' => 'gma', 'Glyma.12G072500' => 'gma', 'Glyma.12G085500' => 'gma', 'Glyma.12G181800' => 'gma', 'Glyma.12G193000' => 'gma', 'Glyma.13G309300' => 'gma', 'Glyma.13G319000' => 'gma', 'Glyma.17G012600' => 'gma', 'Gohir.A06G148600' => 'ghi', 'Gohir.A07G115800' => 'ghi', 'Gohir.A08G003600' => 'ghi', 'Gohir.A09G093300' => 'ghi', 'Gohir.A09G105400' => 'ghi', 'Gohir.A09G105500' => 'ghi', 'Gohir.D06G154600' => 'ghi', 'Gohir.D07G120200' => 'ghi', 'Gohir.D08G013900' => 'ghi', 'Gohir.D09G093100' => 'ghi', 'Gohir.D09G102200' => 'ghi', 'Gohir.D09G102300' => 'ghi', 'Gorai.001G129400' => 'gra', 'Gorai.004G008200' => 'gra', 'Gorai.006G109800' => 'gra', 'Gorai.006G119500' => 'gra', 'Gorai.006G121300' => 'gra', 'Gorai.010G180700' => 'gra', 'GSVIVG01012716001' => 'vvi', 'GSVIVG01025118001' => 'vvi', 'GSVIVG01030439001' => 'vvi', 'GSVIVG01031397001' => 'vvi', 'HanXRQChr01g0004201' => 'han', 'HanXRQChr02g0054941' => 'han', 'HanXRQChr05g0141811' => 'han', 'HanXRQChr07g0197751' => 'han', 'HanXRQChr11g0346691' => 'han', 'HanXRQChr13g0396971' => 'han', 'HanXRQChr14g0432951' => 'han', 'HanXRQChr14g0452001' => 'han', 'HanXRQChr15g0496681' => 'han', 'HanXRQChr17g0557491' => 'han', 'HanXRQChr17g0557501' => 'han', 'Haze_06809' => 'cav', 'Haze_12852' => 'cav', 'Haze_15850' => 'cav', 'Haze_23446' => 'cav', 'Haze_23942' => 'cav', 'Haze_23943' => 'cav', 'Hma1.2p1_0091F.1_g046450' => 'hma', 'Hma1.2p1_0128F.1_g059910' => 'hma', 'Hma1.2p1_0249F.1_g102260' => 'hma', 'Hma1.2p1_0453F.1_g156190' => 'hma', 'Hma1.2p1_0695F.1_g204380' => 'hma', 'Hma1.2p1_0749F.1_g212650' => 'hma', 'Hma1.2p1_2156F.1_g315420' => 'hma', 'Hma1.2p1_2686F.1_g326940' => 'hma', 'HPP92_006428' => 'vpl', 'HPP92_012069' => 'vpl', 'HPP92_014129' => 'vpl', 'HPP92_014133' => 'vpl', 'HPP92_017315' => 'vpl', 'HPP92_026445' => 'vpl', 'HPP92_026446' => 'vpl', 'Hund00774' => 'sun', 'Hund07682' => 'sun', 'Hund21413' => 'sun', 'Hund23462' => 'sun', 'Hund23463' => 'sun', 'Lalb_Chr03g0027911' => 'lal', 'Lalb_Chr13g0304271' => 'lal', 'Lalb_Chr19g0137471' => 'lal', 'Lalb_Chr22g0350651' => 'lal', 'Lalb_Chr24g0395151' => 'lal', 'Lj1A1231T40' => 'lonja', 'Lj1A221T48' => 'lonja', 'Lj1C924T12' => 'lonja', 'Lj2C993G6' => 'lonja', 'Lj3g0005790' => 'lja', 'Lj3g0015432' => 'lja', 'Lj3g0017722' => 'lja', 'Lj3g0018497' => 'lja', 'Lj4g0025071' => 'lja', 'Lsat_1_v5_gn_1_129680' => 'lsa', 'Lsat_1_v5_gn_2_25321' => 'lsa', 'Lsat_1_v5_gn_2_95461' => 'lsa', 'Lsat_1_v5_gn_4_159620' => 'lsa', 'Lsat_1_v5_gn_6_41301' => 'lsa', 'Lsat_1_v5_gn_6_74660' => 'lsa', 'Lsat_1_v5_gn_7_11520' => 'lsa', 'Lsat_1_v5_gn_9_67680' => 'lsa', 'Manes.04G008300' => 'mes', 'Manes.04G008400' => 'mes', 'Manes.04G026500' => 'mes', 'Manes.10G135300' => 'mes', 'Manes.11G157300' => 'mes', 'Manes.12G074000' => 'mes', 'Manes.16G006200' => 'mes', 'Manes.17G026400' => 'mes', 'Mapoly0024s0086' => 'mpo', 'Mapoly0024s0087' => 'mpo', 'Mapoly0071s0057' => 'mpo', 'Mapoly0204s0012' => 'mpo', 'MBI04_g37681_MAGBIO' => 'mbi', 'MBI05_g17779_MAGBIO' => 'mbi', 'MBI12_g31184_MAGBIO' => 'mbi', 'MBI17_g11083_MAGBIO' => 'mbi', 'MBI18_g03883_MAGBIO' => 'mbi', 'MBI18_g28940_MAGBIO' => 'mbi', 'MCO01G690' => 'mco', 'MD03G1109900' => 'mdo', 'MD03G1134800' => 'mdo', 'MD05G1348000' => 'mdo', 'MD10G1322400' => 'mdo', 'MD11G1123300' => 'mdo', 'MD11G1157600' => 'mdo', 'Medtr2g084875' => 'mtr', 'Medtr2g088130' => 'mtr', 'Medtr4g055310' => 'mtr', 'Medtr4g061070' => 'mtr', 'Medtr4g132250' => 'mtr', 'MELO3C004795.2' => 'cme', 'MELO3C004797.2' => 'cme', 'MELO3C007396.2' => 'cme', 'MELO3C019277.2' => 'cme', 'MELO3C021449.2' => 'cme', 'MELO3C025736.2' => 'cme', 'Migut.D02175' => 'egut', 'Migut.H01573' => 'egut', 'Migut.M01327' => 'egut', 'Migut.N02513' => 'egut', 'MSTRG.14638' => 'ama', 'MSTRG.18632' => 'ama', 'MSTRG.7203' => 'ama', 'Nitab4.5_0000533g0140' => 'nta', 'Nitab4.5_0000888g0150' => 'nta', 'Nitab4.5_0001453g0040' => 'nta', 'Nitab4.5_0002827g0090' => 'nta', 'Nitab4.5_0003082g0040' => 'nta', 'Nitab4.5_0007799g0040' => 'nta', 'Nitab4.5_0008983g0010' => 'nta', 'Nitab4.5_0009017g0020' => 'nta', 'Nn1g02132' => 'nnu', 'Nn1g03492' => 'nnu', 'Nn1g03493' => 'nnu', 'Nn1g03494' => 'nnu', 'Nn1g07164' => 'nnu', 'Nn1g07291' => 'nnu', 'Nn2g10655' => 'nnu', 'Nn2g11652' => 'nnu', 'Nn2g14008' => 'nnu', 'Nn3g17476' => 'nnu', 'Nn3g17477' => 'nnu', 'Nn4g22370' => 'nnu', 'Nn4g25255' => 'nnu', 'Nn5g27755' => 'nnu', 'Nn6g34260' => 'nnu', 'Nn6g35041' => 'nnu', 'Oeu005924.1' => 'oeu', 'Oeu008383.1' => 'oeu', 'Oeu014928.1' => 'oeu', 'Oeu019889.1' => 'oeu', 'Oeu022271.1' => 'oeu', 'Oeu025271.1' => 'oeu', 'Oeu036302.1' => 'oeu', 'Oeu044100.1' => 'oeu', 'Os01g0528300' => 'osa', 'Os03g0286200' => 'osa', 'Os04g0406600' => 'osa', 'Os07g0512000' => 'osa', 'Os07g0694600' => 'osa', 'Os08g0411000' => 'osa', 'Os09g0565700' => 'osa', 'Os09g0566050' => 'osa', 'Os10g0523700' => 'osa', 'Peaxi162Scf00002g00514' => 'pax', 'Peaxi162Scf00047g01817' => 'pax', 'Peaxi162Scf00114g00001' => 'pax', 'Peaxi162Scf00147g00613' => 'pax', 'Peaxi162Scf00389g00425' => 'pax', 'PGR042G1139' => 'pgr', 'PGR042G3273' => 'pgr', 'PGR102G2180' => 'pgr', 'PGR119G0234' => 'pgr', 'PGR119G0668' => 'pgr', 'PGSC0003DMG400007122' => 'stu', 'PGSC0003DMG400016478' => 'stu', 'PGSC0003DMG400025374' => 'stu', 'PGSC0003DMG400026536' => 'stu', 'Phvul.003G079600' => 'pvu', 'Phvul.005G115600' => 'pvu', 'Phvul.005G127100' => 'pvu', 'Phvul.006G149500' => 'pvu', 'Phvul.006G149600' => 'pvu', 'Phvul.011G071800' => 'pvu', 'Phvul.011G090400' => 'pvu', 'Potri.004G013400' => 'ptr', 'Potri.004G188100' => 'ptr', 'Potri.008G195500' => 'ptr', 'Potri.009G148800' => 'ptr', 'Potri.011G004700' => 'ptr', 'Pp3c17_22810' => 'ppa', 'Pp3c18_4480' => 'ppa', 'Pp3c19_13030' => 'ppa', 'Pp3c1_33620' => 'ppa', 'Pp3c2_9380' => 'ppa', 'PRCOL_00001023' => 'pco', 'Prupe.3G216300' => 'ppe', 'Prupe.4G019500' => 'ppe', 'Prupe.6G092500' => 'ppe', 'Prupe.6G119200' => 'ppe', 'Psat0s1945g0080' => 'psa', 'Psat0s4167g0040' => 'psa', 'Psat1g185800' => 'psa', 'Psat4g006440' => 'psa', 'Psat4g006480' => 'psa', 'Psat4g168120' => 'psa', 'Psat5g255680' => 'psa', 'Psat5g261760' => 'psa', 'Psat7g222120' => 'psa', 'PSO063G7252' => 'pso', 'PSO170G4778' => 'pso', 'PSO210G2249' => 'pso', 'PSO339G2411' => 'pso', 'PSO339G2457' => 'pso', 'PSO339G2854' => 'pso', 'PSO339G4288' => 'pso', 'PSO339G4615' => 'pso', 'PSO384G2796' => 'pso', 'PSO384G2940' => 'pso', 'PSO384G4227' => 'pso', 'PSO478G1425' => 'pso', 'PSO541G3863' => 'pso', 'PSO675G0507' => 'pso', 'PSO782G0338' => 'pso', 'PSO832G0644' => 'pso', 'QL01p013664' => 'qlo', 'QL01p036598' => 'qlo', 'QL05p072984' => 'qlo', 'QL08p005768' => 'qlo', 'QL08p032743' => 'qlo', 'QL93p0073_0439' => 'qlo', 'QL93p0073_0444' => 'qlo', 'RcHm_v2.0_Chr5g0002851' => 'rch', 'RcHm_v2.0_Chr5g0055201' => 'rch', 'RcHm_v2.0_Chr5g0061191' => 'rch', 'RcHm_v2.0_Chr7g0203231' => 'rch', 'Rhsim01G0208100' => 'rsi', 'Rhsim01G0208200' => 'rsi', 'Rhsim02G0106500' => 'rsi', 'Rhsim03G0107900' => 'rsi', 'Rhsim06G0163400' => 'rsi', 'Rhsim13G0105200' => 'rsi', 'Sabra04G0006300' => 'sbr', 'Sabra04G0127000' => 'sbr', 'Sabra08G0148700' => 'sbr', 'Sabra09G0117400' => 'sbr', 'SalBow1G3326' => 'sbo', 'SalBow3G3228' => 'sbo', 'SalBow6G1634' => 'sbo', 'SalBow6G3603' => 'sbo', 'SalBow6G5266' => 'sbo', 'SalBow7G2265' => 'sbo', 'SalBow8G0850' => 'sbo', 'SalBow8G2592' => 'sbo', 'Sc05g0009240' => 'sci', 'Sc12g0002300' => 'sci', 'Sc21g0000100' => 'sci', 'Sc21g0004720' => 'sci', 'Sed0002949' => 'sed', 'Sed0004114' => 'sed', 'Sed0004306' => 'sed', 'Sed0006172' => 'sed', 'Sed0008413' => 'sed', 'Sed0013809' => 'sed', 'Sed0019556' => 'sed', 'SEGI_03570' => 'sgi', 'SEGI_07859' => 'sgi', 'SEGI_15042' => 'sgi', 'SEGI_16263' => 'sgi', 'SEGI_16552' => 'sgi', 'SEGI_24331' => 'sgi', 'SEGI_27316' => 'sgi', 'SEGI_29521' => 'sgi', 'SEGI_41342' => 'sgi', 'SGA_v2.0_scaffold27G11617' => 'sas', 'SGA_v2.0_scaffold316G48428' => 'sas', 'SGA_v2.0_scaffold49G18261' => 'sas', 'SGA_v2.0_scaffold7G03831' => 'sas', 'SGA_v2.0_scaffold93G28359' => 'sas', 'SHI02210' => 'shi', 'SHI06028' => 'shi', 'SHI06321' => 'shi', 'SMO111G0012' => 'smo', 'SMO228G0080' => 'smo', 'SMO356G0756' => 'smo', 'Solyc02g080620.3' => 'sly', 'Solyc06g074530.1' => 'sly', 'Solyc11g066890.1' => 'sly', 'Solyc11g072520.3' => 'sly', 'Sopen02g025330' => 'spe', 'Sopen06g031000' => 'spe', 'Sopen09g008240' => 'spe', 'Sopen09g025210' => 'spe', 'Sopen11g026600' => 'spe', 'Sopen11g030170' => 'spe', 'Sp1g10420' => 'spa', 'Sp3g06570' => 'spa', 'Sp4g10660' => 'spa', 'Sp5g16460' => 'spa', 'Sp6g22710' => 'spa', 'TAR365G0112' => 'tar', 'TAR369G0717' => 'tar', 'TAR374G0976' => 'tar', 'TAR623G1128' => 'tar', 'TAR626G1937' => 'tar', 'TAR627G0123' => 'tar', 'TAR628G0305' => 'tar', 'TAR636G1176' => 'tar', 'TAR636G2442' => 'tar', 'THA.LOC104800556' => 'tha', 'THA.LOC104809501' => 'tha', 'THA.LOC104815126' => 'tha', 'THA.LOC104815732' => 'tha', 'THA.LOC104823528' => 'tha', 'Thecc.02G365600' => 'tca', 'Thecc.06G222300' => 'tca', 'Thecc.09G261800' => 'tca', 'Thecc.09G291400' => 'tca', 'Thhalv10003028m.g' => 'esa', 'Thhalv10007886m.g' => 'esa', 'Thhalv10016085m.g' => 'esa', 'Thhalv10016681m.g' => 'esa', 'Thhalv10020951m.g' => 'esa', 'TPR.G15598' => 'tpr', 'TPR.G29305' => 'tpr', 'TPR.G32395' => 'tpr', 'TPR.G36998' => 'tpr', 'TPR.G4227' => 'tpr', 'TWI18G1433' => 'twi', 'TWI31G0755' => 'twi', 'TWI38G0912' => 'twi', 'TWI75G1097' => 'twi', 'TWI75G1619' => 'twi', 'TWI79G1336' => 'twi', 'unitig_0.g943' => 'ugi', 'unitig_0.g944' => 'ugi', 'unitig_22.g6646' => 'ugi', 'unitig_37.g12681' => 'ugi', 'unitig_8.g3290' => 'ugi', 'vmacro03278' => 'vma', 'vmacro12197' => 'vma', 'vmacro14478' => 'vma', 'vmacro15787' => 'vma', 'vmacro15789' => 'vma', 'vmacro15790' => 'vma', 'vmacro15806' => 'vma', 'vmacro22907' => 'vma', 'vmacro22908' => 'vma', 'vmacro22909' => 'vma', 'vmacro23108' => 'vma', 'VMungo0540G0540' => 'vmu', 'VMungo0540G2468' => 'vmu', 'VMungo1080G0390' => 'vmu', 'VMungo1080G1165' => 'vmu', 'VMungo1127G0170' => 'vmu', 'VMungo1127G2099' => 'vmu', 'VMungo1215G3013' => 'vmu', 'Zm00001eb013110' => 'zma', 'Zm00001eb084260' => 'zma', 'Zm00001eb096110' => 'zma', 'Zm00001eb217510' => 'zma', 'Zm00001eb322550' => 'zma', 'Zm00001eb390770' => 'zma', 'Zm00001eb397170' => 'zma', 'Zm00001eb404610' => 'zma', 'Zm00001eb421790' => 'zma' ), 'gf_id' => 'HOM05D000911', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000911' ), 'data_identifier' => 'HOM05D000911', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000911', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27780' => 'bna', 'A03p35380' => 'bna', 'A04p21160' => 'bna', 'A05p40570' => 'bna', 'A06p26900' => 'bna', 'A08p33230' => 'bna', 'A09p65960' => 'bna', 'A10p18290' => 'bna', 'Aa31LG1G12990' => 'aar', 'Aa31LG1G2980' => 'aar', 'Aa31LG4G14320' => 'aar', 'Aa31LG7G11800' => 'aar', 'Aa31sc36G50' => 'aar', 'Aa31sc36G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3721' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5459' => 'aag', 'Actinidia03028' => 'ach', 'Actinidia03753' => 'ach', 'Actinidia04187' => 'ach', 'Actinidia05509' => 'ach', 'Actinidia24180' => 'ach', 'Actinidia26906' => 'ach', 'Actinidia37097' => 'ach', 'Actinidia38249' => 'ach', 'Ah.01g003470' => 'amhyb', 'Ah.01g004580' => 'amhyb', 'Ah.01g014850' => 'amhyb', 'Ah.01g016830' => 'amhyb', 'Ah.14g088000' => 'amhyb', 'AL1G22980' => 'aly', 'AL3G18990' => 'aly', 'AL4G22440' => 'aly', 'AL4G33180' => 'aly', 'AL5G22920' => 'aly', 'AL6G33660' => 'aly', 'AL8G20720' => 'aly', 'Aqoxy1G00935' => 'aox', 'Aqoxy1G02094' => 'aox', 'Aqoxy2G01239' => 'aox', 'Aqoxy4G01870' => 'aox', 'Aqoxy7G00450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.36ZVTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71EM27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5D6C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH3WRE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3NCM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RIM768' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YB5YRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z36GDV' => 'arhy', 'AT1G08250' => 'ath', 'AT1G11790' => 'ath', 'AT2G27820' => 'ath', 'AT3G07630' => 'ath', 'AT3G44720' => 'ath', 'AT5G22630' => 'ath', 'ATR0693G304' => 'atr', 'ATR0794G109' => 'atr', 'ATR0820G120' => 'atr', 'ATR1159G064' => 'atr', 'Atru.chr10.2239' => 'acertr', 'Atru.chr3.3371' => 'acertr', 'Atru.chr6.3202' => 'acertr', 'AUR62006499' => 'cqu', 'AUR62012718' => 'cqu', 'AUR62021938' => 'cqu', 'AUR62023932' => 'cqu', 'AUR62025034' => 'cqu', 'AUR62025035' => 'cqu', 'AUR62038307' => 'cqu', 'AUR62043466' => 'cqu', 'BcaB02g10748' => 'bca', 'BcaB03g13231' => 'bca', 'BcaB03g14689' => 'bca', 'BcaB05g22716' => 'bca', 'BcaB06g28172' => 'bca', 'BcaB08g36413' => 'bca', 'BcaC01g02186' => 'bca', 'BcaC01g04272' => 'bca', 'BcaC02g08080' => 'bca', 'BcaC02g08227' => 'bca', 'BcaC03g13901' => 'bca', 'BcaC04g19593' => 'bca', 'BcaC04g20874' => 'bca', 'BcaC05g29557' => 'bca', 'BcaC06g35505' => 'bca', 'BcaC07g41954' => 'bca', 'BcaC07g41955' => 'bca', 'BcaC07g41956' => 'bca', 'BcaC07g42519' => 'bca', 'BcaC07g42520' => 'bca', 'BcaC07g42523' => 'bca', 'BcaC07g42524' => 'bca', 'BcaC07g42525' => 'bca', 'BcaC08g47480' => 'bca', 'BcaC08g47481' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00530' => 'bna', 'BolC2t07178H' => 'bol', 'BolC3t16567H' => 'bol', 'BolC4t27234H' => 'bol', 'BolC5t29728H' => 'bol', 'BolC5t34622H' => 'bol', 'BolC6t40321H' => 'bol', 'BolC7t42028H' => 'bol', 'BolC8t49125H' => 'bol', 'BolC8t52538H' => 'bol', 'BolC8t52539H' => 'bol', 'BolC9t56681H' => 'bol', 'BolC9t58266H' => 'bol', 'BolSC21t60294H' => 'bol', 'BraA02t05670Z' => 'bra', 'BraA03t12716Z' => 'bra', 'BraA04t17685Z' => 'bra', 'BraA05t22788Z' => 'bra', 'BraA06t24032Z' => 'bra', 'BraA06t25625Z' => 'bra', 'BraA07t27930Z' => 'bra', 'BraA08t35242Z' => 'bra', 'BraA09t38609Z' => 'bra', 'BraA10t43905Z' => 'bra', 'C02p11060' => 'bna', 'C03p42990' => 'bna', 'C03p67310' => 'bna', 'C04p56990' => 'bna', 'C04p58660' => 'bna', 'C05p09890' => 'bna', 'C05p59680' => 'bna', 'C06p19830' => 'bna', 'C06p53040' => 'bna', 'C07p15230' => 'bna', 'C08p50070' => 'bna', 'C08p50090' => 'bna', 'C09p38330' => 'bna', 'C09p53940' => 'bna', 'CAN.G1014.1' => 'can', 'CAN.G644.30' => 'can', 'CAN.G84.47' => 'can', 'CAN.G919.8' => 'can', 'CANSAT54G0113' => 'cansat', 'CANSAT54G1286' => 'cansat', 'CANSAT64G1020' => 'cansat', 'CARHR008080' => 'chi', 'CARHR008090' => 'chi', 'CARHR012130' => 'chi', 'CARHR038390' => 'chi', 'CARHR082330' => 'chi', 'CARHR120520' => 'chi', 'CARHR151470' => 'chi', 'CARHR190950' => 'chi', 'Carub.0001s0760' => 'cru', 'Carub.0001s1146' => 'cru', 'Carub.0003s0721' => 'cru', 'Carub.0004s0858' => 'cru', 'Carub.0005s1040' => 'cru', 'Carub.0006s2035' => 'cru', 'Carub.0015s0005' => 'cru', 'Ca_01607_v3' => 'car', 'Ca_01677_v3' => 'car', 'Ca_06087_v3' => 'car', 'Ca_19238_v3' => 'car', 'Ca_19373_v3' => 'car', 'Ca_21079_v3' => 'car', 'CBR_g54016' => 'cbr', 'CBR_g54018' => 'cbr', 'CBR_g54020' => 'cbr', 'Cc01_g09780' => 'ccan', 'Cc01_g11680' => 'ccan', 'Cc02_g15610' => 'ccan', 'Cc05_g04350' => 'ccan', 'Cc09_g01580' => 'ccan', 'CDE01G0795' => 'cde', 'CDE02G2024' => 'cde', 'CDE02G2260' => 'cde', 'CDE02G4561' => 'cde', 'CDE05G2733' => 'cde', 'CDE05G3422' => 'cde', 'CDE06G2003' => 'cde', 'CDE08G0576' => 'cde', 'CDE09G0048' => 'cde', 'CDE11G0805' => 'cde', 'Cfa003644' => 'cfa', 'Cfa006290' => 'cfa', 'Cfa010080' => 'cfa', 'Cfa011376' => 'cfa', 'Cfa011576' => 'cfa', 'Cfa011577' => 'cfa', 'Cfa014389' => 'cfa', 'Ciclev10006044m.g' => 'ccl', 'Ciclev10006954m.g' => 'ccl', 'Ciclev10015131m.g' => 'ccl', 'Ciclev10015580m.g' => 'ccl', 'Ciclev10028359m.g' => 'ccl', 'Ciclev10028573m.g' => 'ccl', 'CiPaw.03G159300' => 'cil', 'CiPaw.04G115100' => 'cil', 'CiPaw.09G092800' => 'cil', 'CiPaw.10G071800' => 'cil', 'CiPaw.13G105800' => 'cil', 'CiPaw.13G141000' => 'cil', 'CiPaw.14G103400' => 'cil', 'ClCG01G012700' => 'cla', 'ClCG01G012720' => 'cla', 'ClCG01G021920' => 'cla', 'ClCG02G008870' => 'cla', 'ClCG02G020840' => 'cla', 'ClCG02G021930' => 'cla', 'COL.COLO4_19302' => 'col', 'COL.COLO4_25262' => 'col', 'COL.COLO4_31788' => 'col', 'Cpa.g.c34684' => 'cpa', 'Cpa.g.c36520.1' => 'cpa', 'Cpa.g.c45626' => 'cpa', 'Cpa.g.sc121.17' => 'cpa', 'Cpa.g.sc13.22' => 'cpa', 'Cpa.g.sc87.88' => 'cpa', 'Cre06.g261800' => 'cre', 'CsaV3_1G014500' => 'csa', 'CsaV3_1G014510' => 'csa', 'CsaV3_2G034880' => 'csa', 'CsaV3_6G014760' => 'csa', 'CsaV3_6G021500' => 'csa', 'CsaV3_6G048980' => 'csa', 'CSS0002511' => 'camsi', 'CSS0007556' => 'camsi', 'CSS0008532' => 'camsi', 'CSS0009709' => 'camsi', 'CSS0010486' => 'camsi', 'CSS0016768' => 'camsi', 'CSS0023512' => 'camsi', 'CSS0025341' => 'camsi', 'CSS0027999' => 'camsi', 'CSS0028944' => 'camsi', 'CSS0032292' => 'camsi', 'CSS0032464' => 'camsi', 'CSS0037153' => 'camsi', 'CSS0039256' => 'camsi', 'CSS0048392' => 'camsi', 'CSS0050458' => 'camsi', 'DCAR_004224' => 'dca', 'DCAR_006147' => 'dca', 'DCAR_006465' => 'dca', 'DCAR_008159' => 'dca', 'DCAR_012164' => 'dca', 'DCAR_019764' => 'dca', 'Dinv05418' => 'din', 'Dinv10839' => 'din', 'Dinv12521' => 'din', 'Dinv13900' => 'din', 'Dinv29426' => 'din', 'Duzib150G0263' => 'dzi', 'Duzib168G1178' => 'dzi', 'Duzib168G1924' => 'dzi', 'Duzib170G0299' => 'dzi', 'Duzib170G0813' => 'dzi', 'Duzib235G1128' => 'dzi', 'Duzib248G1060' => 'dzi', 'ECA232G1910' => 'eca', 'ECA233G4621' => 'eca', 'ECA238G1216' => 'eca', 'ECA238G1784' => 'eca', 'ECA248G1242' => 'eca', 'EL10Ac8g20071' => 'bvu', 'EL10Ac9g21086' => 'bvu', 'EL10Ac9g22407' => 'bvu', 'EL10Ac9g22412' => 'bvu', 'Eucgr.A01119' => 'egr', 'Eucgr.E04043' => 'egr', 'Eucgr.J00428' => 'egr', 'Eucgr.J00958' => 'egr', 'FAN11G3091' => 'fan', 'FAN11G3651' => 'fan', 'FAN16G2566' => 'fan', 'FAN21G3155' => 'fan', 'FAN21G3400' => 'fan', 'FAN21G3543' => 'fan', 'FAN25G0234' => 'fan', 'FAN25G1422' => 'fan', 'FAN25G3392' => 'fan', 'FvH4_3g01940' => 'fve', 'FvH4_3g29870' => 'fve', 'FvH4_3g33680' => 'fve', 'Glyma.09G004200' => 'gma', 'Glyma.11G151288' => 'gma', 'Glyma.11G189100' => 'gma', 'Glyma.12G072500' => 'gma', 'Glyma.12G085500' => 'gma', 'Glyma.12G181800' => 'gma', 'Glyma.12G193000' => 'gma', 'Glyma.13G309300' => 'gma', 'Glyma.13G319000' => 'gma', 'Glyma.17G012600' => 'gma', 'Gohir.A06G148600' => 'ghi', 'Gohir.A07G115800' => 'ghi', 'Gohir.A08G003600' => 'ghi', 'Gohir.A09G093300' => 'ghi', 'Gohir.A09G105400' => 'ghi', 'Gohir.A09G105500' => 'ghi', 'Gohir.D06G154600' => 'ghi', 'Gohir.D07G120200' => 'ghi', 'Gohir.D08G013900' => 'ghi', 'Gohir.D09G093100' => 'ghi', 'Gohir.D09G102200' => 'ghi', 'Gohir.D09G102300' => 'ghi', 'Gorai.001G129400' => 'gra', 'Gorai.004G008200' => 'gra', 'Gorai.006G109800' => 'gra', 'Gorai.006G119500' => 'gra', 'Gorai.006G121300' => 'gra', 'Gorai.010G180700' => 'gra', 'GSVIVG01012716001' => 'vvi', 'GSVIVG01025118001' => 'vvi', 'GSVIVG01030439001' => 'vvi', 'GSVIVG01031397001' => 'vvi', 'HanXRQChr01g0004201' => 'han', 'HanXRQChr02g0054941' => 'han', 'HanXRQChr05g0141811' => 'han', 'HanXRQChr07g0197751' => 'han', 'HanXRQChr11g0346691' => 'han', 'HanXRQChr13g0396971' => 'han', 'HanXRQChr14g0432951' => 'han', 'HanXRQChr14g0452001' => 'han', 'HanXRQChr15g0496681' => 'han', 'HanXRQChr17g0557491' => 'han', 'HanXRQChr17g0557501' => 'han', 'Haze_06809' => 'cav', 'Haze_12852' => 'cav', 'Haze_15850' => 'cav', 'Haze_23446' => 'cav', 'Haze_23942' => 'cav', 'Haze_23943' => 'cav', 'Hma1.2p1_0091F.1_g046450' => 'hma', 'Hma1.2p1_0128F.1_g059910' => 'hma', 'Hma1.2p1_0249F.1_g102260' => 'hma', 'Hma1.2p1_0453F.1_g156190' => 'hma', 'Hma1.2p1_0695F.1_g204380' => 'hma', 'Hma1.2p1_0749F.1_g212650' => 'hma', 'Hma1.2p1_2156F.1_g315420' => 'hma', 'Hma1.2p1_2686F.1_g326940' => 'hma', 'HPP92_006428' => 'vpl', 'HPP92_012069' => 'vpl', 'HPP92_014129' => 'vpl', 'HPP92_014133' => 'vpl', 'HPP92_017315' => 'vpl', 'HPP92_026445' => 'vpl', 'HPP92_026446' => 'vpl', 'Hund00774' => 'sun', 'Hund07682' => 'sun', 'Hund21413' => 'sun', 'Hund23462' => 'sun', 'Hund23463' => 'sun', 'Lalb_Chr03g0027911' => 'lal', 'Lalb_Chr13g0304271' => 'lal', 'Lalb_Chr19g0137471' => 'lal', 'Lalb_Chr22g0350651' => 'lal', 'Lalb_Chr24g0395151' => 'lal', 'Lj1A1231T40' => 'lonja', 'Lj1A221T48' => 'lonja', 'Lj1C924T12' => 'lonja', 'Lj2C993G6' => 'lonja', 'Lj3g0005790' => 'lja', 'Lj3g0015432' => 'lja', 'Lj3g0017722' => 'lja', 'Lj3g0018497' => 'lja', 'Lj4g0025071' => 'lja', 'Lsat_1_v5_gn_1_129680' => 'lsa', 'Lsat_1_v5_gn_2_25321' => 'lsa', 'Lsat_1_v5_gn_2_95461' => 'lsa', 'Lsat_1_v5_gn_4_159620' => 'lsa', 'Lsat_1_v5_gn_6_41301' => 'lsa', 'Lsat_1_v5_gn_6_74660' => 'lsa', 'Lsat_1_v5_gn_7_11520' => 'lsa', 'Lsat_1_v5_gn_9_67680' => 'lsa', 'Manes.04G008300' => 'mes', 'Manes.04G008400' => 'mes', 'Manes.04G026500' => 'mes', 'Manes.10G135300' => 'mes', 'Manes.11G157300' => 'mes', 'Manes.12G074000' => 'mes', 'Manes.16G006200' => 'mes', 'Manes.17G026400' => 'mes', 'Mapoly0024s0086' => 'mpo', 'Mapoly0024s0087' => 'mpo', 'Mapoly0071s0057' => 'mpo', 'Mapoly0204s0012' => 'mpo', 'MBI04_g37681_MAGBIO' => 'mbi', 'MBI05_g17779_MAGBIO' => 'mbi', 'MBI12_g31184_MAGBIO' => 'mbi', 'MBI17_g11083_MAGBIO' => 'mbi', 'MBI18_g03883_MAGBIO' => 'mbi', 'MBI18_g28940_MAGBIO' => 'mbi', 'MCO01G690' => 'mco', 'MD03G1109900' => 'mdo', 'MD03G1134800' => 'mdo', 'MD05G1348000' => 'mdo', 'MD10G1322400' => 'mdo', 'MD11G1123300' => 'mdo', 'MD11G1157600' => 'mdo', 'Medtr2g084875' => 'mtr', 'Medtr2g088130' => 'mtr', 'Medtr4g055310' => 'mtr', 'Medtr4g061070' => 'mtr', 'Medtr4g132250' => 'mtr', 'MELO3C004795.2' => 'cme', 'MELO3C004797.2' => 'cme', 'MELO3C007396.2' => 'cme', 'MELO3C019277.2' => 'cme', 'MELO3C021449.2' => 'cme', 'MELO3C025736.2' => 'cme', 'Migut.D02175' => 'egut', 'Migut.H01573' => 'egut', 'Migut.M01327' => 'egut', 'Migut.N02513' => 'egut', 'MSTRG.14638' => 'ama', 'MSTRG.18632' => 'ama', 'MSTRG.7203' => 'ama', 'Nitab4.5_0000533g0140' => 'nta', 'Nitab4.5_0000888g0150' => 'nta', 'Nitab4.5_0001453g0040' => 'nta', 'Nitab4.5_0002827g0090' => 'nta', 'Nitab4.5_0003082g0040' => 'nta', 'Nitab4.5_0007799g0040' => 'nta', 'Nitab4.5_0008983g0010' => 'nta', 'Nitab4.5_0009017g0020' => 'nta', 'Nn1g02132' => 'nnu', 'Nn1g03492' => 'nnu', 'Nn1g03493' => 'nnu', 'Nn1g03494' => 'nnu', 'Nn1g07164' => 'nnu', 'Nn1g07291' => 'nnu', 'Nn2g10655' => 'nnu', 'Nn2g11652' => 'nnu', 'Nn2g14008' => 'nnu', 'Nn3g17476' => 'nnu', 'Nn3g17477' => 'nnu', 'Nn4g22370' => 'nnu', 'Nn4g25255' => 'nnu', 'Nn5g27755' => 'nnu', 'Nn6g34260' => 'nnu', 'Nn6g35041' => 'nnu', 'Oeu005924.1' => 'oeu', 'Oeu008383.1' => 'oeu', 'Oeu014928.1' => 'oeu', 'Oeu019889.1' => 'oeu', 'Oeu022271.1' => 'oeu', 'Oeu025271.1' => 'oeu', 'Oeu036302.1' => 'oeu', 'Oeu044100.1' => 'oeu', 'Os01g0528300' => 'osa', 'Os03g0286200' => 'osa', 'Os04g0406600' => 'osa', 'Os07g0512000' => 'osa', 'Os07g0694600' => 'osa', 'Os08g0411000' => 'osa', 'Os09g0565700' => 'osa', 'Os09g0566050' => 'osa', 'Os10g0523700' => 'osa', 'Peaxi162Scf00002g00514' => 'pax', 'Peaxi162Scf00047g01817' => 'pax', 'Peaxi162Scf00114g00001' => 'pax', 'Peaxi162Scf00147g00613' => 'pax', 'Peaxi162Scf00389g00425' => 'pax', 'PGR042G1139' => 'pgr', 'PGR042G3273' => 'pgr', 'PGR102G2180' => 'pgr', 'PGR119G0234' => 'pgr', 'PGR119G0668' => 'pgr', 'PGSC0003DMG400007122' => 'stu', 'PGSC0003DMG400016478' => 'stu', 'PGSC0003DMG400025374' => 'stu', 'PGSC0003DMG400026536' => 'stu', 'Phvul.003G079600' => 'pvu', 'Phvul.005G115600' => 'pvu', 'Phvul.005G127100' => 'pvu', 'Phvul.006G149500' => 'pvu', 'Phvul.006G149600' => 'pvu', 'Phvul.011G071800' => 'pvu', 'Phvul.011G090400' => 'pvu', 'Potri.004G013400' => 'ptr', 'Potri.004G188100' => 'ptr', 'Potri.008G195500' => 'ptr', 'Potri.009G148800' => 'ptr', 'Potri.011G004700' => 'ptr', 'Pp3c17_22810' => 'ppa', 'Pp3c18_4480' => 'ppa', 'Pp3c19_13030' => 'ppa', 'Pp3c1_33620' => 'ppa', 'Pp3c2_9380' => 'ppa', 'PRCOL_00001023' => 'pco', 'Prupe.3G216300' => 'ppe', 'Prupe.4G019500' => 'ppe', 'Prupe.6G092500' => 'ppe', 'Prupe.6G119200' => 'ppe', 'Psat0s1945g0080' => 'psa', 'Psat0s4167g0040' => 'psa', 'Psat1g185800' => 'psa', 'Psat4g006440' => 'psa', 'Psat4g006480' => 'psa', 'Psat4g168120' => 'psa', 'Psat5g255680' => 'psa', 'Psat5g261760' => 'psa', 'Psat7g222120' => 'psa', 'PSO063G7252' => 'pso', 'PSO170G4778' => 'pso', 'PSO210G2249' => 'pso', 'PSO339G2411' => 'pso', 'PSO339G2457' => 'pso', 'PSO339G2854' => 'pso', 'PSO339G4288' => 'pso', 'PSO339G4615' => 'pso', 'PSO384G2796' => 'pso', 'PSO384G2940' => 'pso', 'PSO384G4227' => 'pso', 'PSO478G1425' => 'pso', 'PSO541G3863' => 'pso', 'PSO675G0507' => 'pso', 'PSO782G0338' => 'pso', 'PSO832G0644' => 'pso', 'QL01p013664' => 'qlo', 'QL01p036598' => 'qlo', 'QL05p072984' => 'qlo', 'QL08p005768' => 'qlo', 'QL08p032743' => 'qlo', 'QL93p0073_0439' => 'qlo', 'QL93p0073_0444' => 'qlo', 'RcHm_v2.0_Chr5g0002851' => 'rch', 'RcHm_v2.0_Chr5g0055201' => 'rch', 'RcHm_v2.0_Chr5g0061191' => 'rch', 'RcHm_v2.0_Chr7g0203231' => 'rch', 'Rhsim01G0208100' => 'rsi', 'Rhsim01G0208200' => 'rsi', 'Rhsim02G0106500' => 'rsi', 'Rhsim03G0107900' => 'rsi', 'Rhsim06G0163400' => 'rsi', 'Rhsim13G0105200' => 'rsi', 'Sabra04G0006300' => 'sbr', 'Sabra04G0127000' => 'sbr', 'Sabra08G0148700' => 'sbr', 'Sabra09G0117400' => 'sbr', 'SalBow1G3326' => 'sbo', 'SalBow3G3228' => 'sbo', 'SalBow6G1634' => 'sbo', 'SalBow6G3603' => 'sbo', 'SalBow6G5266' => 'sbo', 'SalBow7G2265' => 'sbo', 'SalBow8G0850' => 'sbo', 'SalBow8G2592' => 'sbo', 'Sc05g0009240' => 'sci', 'Sc12g0002300' => 'sci', 'Sc21g0000100' => 'sci', 'Sc21g0004720' => 'sci', 'Sed0002949' => 'sed', 'Sed0004114' => 'sed', 'Sed0004306' => 'sed', 'Sed0006172' => 'sed', 'Sed0008413' => 'sed', 'Sed0013809' => 'sed', 'Sed0019556' => 'sed', 'SEGI_03570' => 'sgi', 'SEGI_07859' => 'sgi', 'SEGI_15042' => 'sgi', 'SEGI_16263' => 'sgi', 'SEGI_16552' => 'sgi', 'SEGI_24331' => 'sgi', 'SEGI_27316' => 'sgi', 'SEGI_29521' => 'sgi', 'SEGI_41342' => 'sgi', 'SGA_v2.0_scaffold27G11617' => 'sas', 'SGA_v2.0_scaffold316G48428' => 'sas', 'SGA_v2.0_scaffold49G18261' => 'sas', 'SGA_v2.0_scaffold7G03831' => 'sas', 'SGA_v2.0_scaffold93G28359' => 'sas', 'SHI02210' => 'shi', 'SHI06028' => 'shi', 'SHI06321' => 'shi', 'SMO111G0012' => 'smo', 'SMO228G0080' => 'smo', 'SMO356G0756' => 'smo', 'Solyc02g080620.3' => 'sly', 'Solyc06g074530.1' => 'sly', 'Solyc11g066890.1' => 'sly', 'Solyc11g072520.3' => 'sly', 'Sopen02g025330' => 'spe', 'Sopen06g031000' => 'spe', 'Sopen09g008240' => 'spe', 'Sopen09g025210' => 'spe', 'Sopen11g026600' => 'spe', 'Sopen11g030170' => 'spe', 'Sp1g10420' => 'spa', 'Sp3g06570' => 'spa', 'Sp4g10660' => 'spa', 'Sp5g16460' => 'spa', 'Sp6g22710' => 'spa', 'TAR365G0112' => 'tar', 'TAR369G0717' => 'tar', 'TAR374G0976' => 'tar', 'TAR623G1128' => 'tar', 'TAR626G1937' => 'tar', 'TAR627G0123' => 'tar', 'TAR628G0305' => 'tar', 'TAR636G1176' => 'tar', 'TAR636G2442' => 'tar', 'THA.LOC104800556' => 'tha', 'THA.LOC104809501' => 'tha', 'THA.LOC104815126' => 'tha', 'THA.LOC104815732' => 'tha', 'THA.LOC104823528' => 'tha', 'Thecc.02G365600' => 'tca', 'Thecc.06G222300' => 'tca', 'Thecc.09G261800' => 'tca', 'Thecc.09G291400' => 'tca', 'Thhalv10003028m.g' => 'esa', 'Thhalv10007886m.g' => 'esa', 'Thhalv10016085m.g' => 'esa', 'Thhalv10016681m.g' => 'esa', 'Thhalv10020951m.g' => 'esa', 'TPR.G15598' => 'tpr', 'TPR.G29305' => 'tpr', 'TPR.G32395' => 'tpr', 'TPR.G36998' => 'tpr', 'TPR.G4227' => 'tpr', 'TWI18G1433' => 'twi', 'TWI31G0755' => 'twi', 'TWI38G0912' => 'twi', 'TWI75G1097' => 'twi', 'TWI75G1619' => 'twi', 'TWI79G1336' => 'twi', 'unitig_0.g943' => 'ugi', 'unitig_0.g944' => 'ugi', 'unitig_22.g6646' => 'ugi', 'unitig_37.g12681' => 'ugi', 'unitig_8.g3290' => 'ugi', 'vmacro03278' => 'vma', 'vmacro12197' => 'vma', 'vmacro14478' => 'vma', 'vmacro15787' => 'vma', 'vmacro15789' => 'vma', 'vmacro15790' => 'vma', 'vmacro15806' => 'vma', 'vmacro22907' => 'vma', 'vmacro22908' => 'vma', 'vmacro22909' => 'vma', 'vmacro23108' => 'vma', 'VMungo0540G0540' => 'vmu', 'VMungo0540G2468' => 'vmu', 'VMungo1080G0390' => 'vmu', 'VMungo1080G1165' => 'vmu', 'VMungo1127G0170' => 'vmu', 'VMungo1127G2099' => 'vmu', 'VMungo1215G3013' => 'vmu', 'Zm00001eb013110' => 'zma', 'Zm00001eb084260' => 'zma', 'Zm00001eb096110' => 'zma', 'Zm00001eb217510' => 'zma', 'Zm00001eb322550' => 'zma', 'Zm00001eb390770' => 'zma', 'Zm00001eb397170' => 'zma', 'Zm00001eb404610' => 'zma', 'Zm00001eb421790' => 'zma' ) $gf_id = 'HOM05D000911' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000911' ) $data_identifier = 'HOM05D000911' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 16, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 5, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 6, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 8, 'nnu' => (int) 16, 'oeu' => (int) 8, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 5, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 16, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421790' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000911', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27780' => 'bna', 'A03p35380' => 'bna', 'A04p21160' => 'bna', 'A05p40570' => 'bna', 'A06p26900' => 'bna', 'A08p33230' => 'bna', 'A09p65960' => 'bna', 'A10p18290' => 'bna', 'Aa31LG1G12990' => 'aar', 'Aa31LG1G2980' => 'aar', 'Aa31LG4G14320' => 'aar', 'Aa31LG7G11800' => 'aar', 'Aa31sc36G50' => 'aar', 'Aa31sc36G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3721' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5459' => 'aag', 'Actinidia03028' => 'ach', 'Actinidia03753' => 'ach', 'Actinidia04187' => 'ach', 'Actinidia05509' => 'ach', 'Actinidia24180' => 'ach', 'Actinidia26906' => 'ach', 'Actinidia37097' => 'ach', 'Actinidia38249' => 'ach', 'Ah.01g003470' => 'amhyb', 'Ah.01g004580' => 'amhyb', 'Ah.01g014850' => 'amhyb', 'Ah.01g016830' => 'amhyb', 'Ah.14g088000' => 'amhyb', 'AL1G22980' => 'aly', 'AL3G18990' => 'aly', 'AL4G22440' => 'aly', 'AL4G33180' => 'aly', 'AL5G22920' => 'aly', 'AL6G33660' => 'aly', 'AL8G20720' => 'aly', 'Aqoxy1G00935' => 'aox', 'Aqoxy1G02094' => 'aox', 'Aqoxy2G01239' => 'aox', 'Aqoxy4G01870' => 'aox', 'Aqoxy7G00450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.36ZVTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71EM27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5D6C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH3WRE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3NCM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RIM768' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YB5YRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z36GDV' => 'arhy', 'AT1G08250' => 'ath', 'AT1G11790' => 'ath', 'AT2G27820' => 'ath', 'AT3G07630' => 'ath', 'AT3G44720' => 'ath', 'AT5G22630' => 'ath', 'ATR0693G304' => 'atr', 'ATR0794G109' => 'atr', 'ATR0820G120' => 'atr', 'ATR1159G064' => 'atr', 'Atru.chr10.2239' => 'acertr', 'Atru.chr3.3371' => 'acertr', 'Atru.chr6.3202' => 'acertr', 'AUR62006499' => 'cqu', 'AUR62012718' => 'cqu', 'AUR62021938' => 'cqu', 'AUR62023932' => 'cqu', 'AUR62025034' => 'cqu', 'AUR62025035' => 'cqu', 'AUR62038307' => 'cqu', 'AUR62043466' => 'cqu', 'BcaB02g10748' => 'bca', 'BcaB03g13231' => 'bca', 'BcaB03g14689' => 'bca', 'BcaB05g22716' => 'bca', 'BcaB06g28172' => 'bca', 'BcaB08g36413' => 'bca', 'BcaC01g02186' => 'bca', 'BcaC01g04272' => 'bca', 'BcaC02g08080' => 'bca', 'BcaC02g08227' => 'bca', 'BcaC03g13901' => 'bca', 'BcaC04g19593' => 'bca', 'BcaC04g20874' => 'bca', 'BcaC05g29557' => 'bca', 'BcaC06g35505' => 'bca', 'BcaC07g41954' => 'bca', 'BcaC07g41955' => 'bca', 'BcaC07g41956' => 'bca', 'BcaC07g42519' => 'bca', 'BcaC07g42520' => 'bca', 'BcaC07g42523' => 'bca', 'BcaC07g42524' => 'bca', 'BcaC07g42525' => 'bca', 'BcaC08g47480' => 'bca', 'BcaC08g47481' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00530' => 'bna', 'BolC2t07178H' => 'bol', 'BolC3t16567H' => 'bol', 'BolC4t27234H' => 'bol', 'BolC5t29728H' => 'bol', 'BolC5t34622H' => 'bol', 'BolC6t40321H' => 'bol', 'BolC7t42028H' => 'bol', 'BolC8t49125H' => 'bol', 'BolC8t52538H' => 'bol', 'BolC8t52539H' => 'bol', 'BolC9t56681H' => 'bol', 'BolC9t58266H' => 'bol', 'BolSC21t60294H' => 'bol', 'BraA02t05670Z' => 'bra', 'BraA03t12716Z' => 'bra', 'BraA04t17685Z' => 'bra', 'BraA05t22788Z' => 'bra', 'BraA06t24032Z' => 'bra', 'BraA06t25625Z' => 'bra', 'BraA07t27930Z' => 'bra', 'BraA08t35242Z' => 'bra', 'BraA09t38609Z' => 'bra', 'BraA10t43905Z' => 'bra', 'C02p11060' => 'bna', 'C03p42990' => 'bna', 'C03p67310' => 'bna', 'C04p56990' => 'bna', 'C04p58660' => 'bna', 'C05p09890' => 'bna', 'C05p59680' => 'bna', 'C06p19830' => 'bna', 'C06p53040' => 'bna', 'C07p15230' => 'bna', 'C08p50070' => 'bna', 'C08p50090' => 'bna', 'C09p38330' => 'bna', 'C09p53940' => 'bna', 'CAN.G1014.1' => 'can', 'CAN.G644.30' => 'can', 'CAN.G84.47' => 'can', 'CAN.G919.8' => 'can', 'CANSAT54G0113' => 'cansat', 'CANSAT54G1286' => 'cansat', 'CANSAT64G1020' => 'cansat', 'CARHR008080' => 'chi', 'CARHR008090' => 'chi', 'CARHR012130' => 'chi', 'CARHR038390' => 'chi', 'CARHR082330' => 'chi', 'CARHR120520' => 'chi', 'CARHR151470' => 'chi', 'CARHR190950' => 'chi', 'Carub.0001s0760' => 'cru', 'Carub.0001s1146' => 'cru', 'Carub.0003s0721' => 'cru', 'Carub.0004s0858' => 'cru', 'Carub.0005s1040' => 'cru', 'Carub.0006s2035' => 'cru', 'Carub.0015s0005' => 'cru', 'Ca_01607_v3' => 'car', 'Ca_01677_v3' => 'car', 'Ca_06087_v3' => 'car', 'Ca_19238_v3' => 'car', 'Ca_19373_v3' => 'car', 'Ca_21079_v3' => 'car', 'CBR_g54016' => 'cbr', 'CBR_g54018' => 'cbr', 'CBR_g54020' => 'cbr', 'Cc01_g09780' => 'ccan', 'Cc01_g11680' => 'ccan', 'Cc02_g15610' => 'ccan', 'Cc05_g04350' => 'ccan', 'Cc09_g01580' => 'ccan', 'CDE01G0795' => 'cde', 'CDE02G2024' => 'cde', 'CDE02G2260' => 'cde', 'CDE02G4561' => 'cde', 'CDE05G2733' => 'cde', 'CDE05G3422' => 'cde', 'CDE06G2003' => 'cde', 'CDE08G0576' => 'cde', 'CDE09G0048' => 'cde', 'CDE11G0805' => 'cde', 'Cfa003644' => 'cfa', 'Cfa006290' => 'cfa', 'Cfa010080' => 'cfa', 'Cfa011376' => 'cfa', 'Cfa011576' => 'cfa', 'Cfa011577' => 'cfa', 'Cfa014389' => 'cfa', 'Ciclev10006044m.g' => 'ccl', 'Ciclev10006954m.g' => 'ccl', 'Ciclev10015131m.g' => 'ccl', 'Ciclev10015580m.g' => 'ccl', 'Ciclev10028359m.g' => 'ccl', 'Ciclev10028573m.g' => 'ccl', 'CiPaw.03G159300' => 'cil', 'CiPaw.04G115100' => 'cil', 'CiPaw.09G092800' => 'cil', 'CiPaw.10G071800' => 'cil', 'CiPaw.13G105800' => 'cil', 'CiPaw.13G141000' => 'cil', 'CiPaw.14G103400' => 'cil', 'ClCG01G012700' => 'cla', 'ClCG01G012720' => 'cla', 'ClCG01G021920' => 'cla', 'ClCG02G008870' => 'cla', 'ClCG02G020840' => 'cla', 'ClCG02G021930' => 'cla', 'COL.COLO4_19302' => 'col', 'COL.COLO4_25262' => 'col', 'COL.COLO4_31788' => 'col', 'Cpa.g.c34684' => 'cpa', 'Cpa.g.c36520.1' => 'cpa', 'Cpa.g.c45626' => 'cpa', 'Cpa.g.sc121.17' => 'cpa', 'Cpa.g.sc13.22' => 'cpa', 'Cpa.g.sc87.88' => 'cpa', 'Cre06.g261800' => 'cre', 'CsaV3_1G014500' => 'csa', 'CsaV3_1G014510' => 'csa', 'CsaV3_2G034880' => 'csa', 'CsaV3_6G014760' => 'csa', 'CsaV3_6G021500' => 'csa', 'CsaV3_6G048980' => 'csa', 'CSS0002511' => 'camsi', 'CSS0007556' => 'camsi', 'CSS0008532' => 'camsi', 'CSS0009709' => 'camsi', 'CSS0010486' => 'camsi', 'CSS0016768' => 'camsi', 'CSS0023512' => 'camsi', 'CSS0025341' => 'camsi', 'CSS0027999' => 'camsi', 'CSS0028944' => 'camsi', 'CSS0032292' => 'camsi', 'CSS0032464' => 'camsi', 'CSS0037153' => 'camsi', 'CSS0039256' => 'camsi', 'CSS0048392' => 'camsi', 'CSS0050458' => 'camsi', 'DCAR_004224' => 'dca', 'DCAR_006147' => 'dca', 'DCAR_006465' => 'dca', 'DCAR_008159' => 'dca', 'DCAR_012164' => 'dca', 'DCAR_019764' => 'dca', 'Dinv05418' => 'din', 'Dinv10839' => 'din', 'Dinv12521' => 'din', 'Dinv13900' => 'din', 'Dinv29426' => 'din', 'Duzib150G0263' => 'dzi', 'Duzib168G1178' => 'dzi', 'Duzib168G1924' => 'dzi', 'Duzib170G0299' => 'dzi', 'Duzib170G0813' => 'dzi', 'Duzib235G1128' => 'dzi', 'Duzib248G1060' => 'dzi', 'ECA232G1910' => 'eca', 'ECA233G4621' => 'eca', 'ECA238G1216' => 'eca', 'ECA238G1784' => 'eca', 'ECA248G1242' => 'eca', 'EL10Ac8g20071' => 'bvu', 'EL10Ac9g21086' => 'bvu', 'EL10Ac9g22407' => 'bvu', 'EL10Ac9g22412' => 'bvu', 'Eucgr.A01119' => 'egr', 'Eucgr.E04043' => 'egr', 'Eucgr.J00428' => 'egr', 'Eucgr.J00958' => 'egr', 'FAN11G3091' => 'fan', 'FAN11G3651' => 'fan', 'FAN16G2566' => 'fan', 'FAN21G3155' => 'fan', 'FAN21G3400' => 'fan', 'FAN21G3543' => 'fan', 'FAN25G0234' => 'fan', 'FAN25G1422' => 'fan', 'FAN25G3392' => 'fan', 'FvH4_3g01940' => 'fve', 'FvH4_3g29870' => 'fve', 'FvH4_3g33680' => 'fve', 'Glyma.09G004200' => 'gma', 'Glyma.11G151288' => 'gma', 'Glyma.11G189100' => 'gma', 'Glyma.12G072500' => 'gma', 'Glyma.12G085500' => 'gma', 'Glyma.12G181800' => 'gma', 'Glyma.12G193000' => 'gma', 'Glyma.13G309300' => 'gma', 'Glyma.13G319000' => 'gma', 'Glyma.17G012600' => 'gma', 'Gohir.A06G148600' => 'ghi', 'Gohir.A07G115800' => 'ghi', 'Gohir.A08G003600' => 'ghi', 'Gohir.A09G093300' => 'ghi', 'Gohir.A09G105400' => 'ghi', 'Gohir.A09G105500' => 'ghi', 'Gohir.D06G154600' => 'ghi', 'Gohir.D07G120200' => 'ghi', 'Gohir.D08G013900' => 'ghi', 'Gohir.D09G093100' => 'ghi', 'Gohir.D09G102200' => 'ghi', 'Gohir.D09G102300' => 'ghi', 'Gorai.001G129400' => 'gra', 'Gorai.004G008200' => 'gra', 'Gorai.006G109800' => 'gra', 'Gorai.006G119500' => 'gra', 'Gorai.006G121300' => 'gra', 'Gorai.010G180700' => 'gra', 'GSVIVG01012716001' => 'vvi', 'GSVIVG01025118001' => 'vvi', 'GSVIVG01030439001' => 'vvi', 'GSVIVG01031397001' => 'vvi', 'HanXRQChr01g0004201' => 'han', 'HanXRQChr02g0054941' => 'han', 'HanXRQChr05g0141811' => 'han', 'HanXRQChr07g0197751' => 'han', 'HanXRQChr11g0346691' => 'han', 'HanXRQChr13g0396971' => 'han', 'HanXRQChr14g0432951' => 'han', 'HanXRQChr14g0452001' => 'han', 'HanXRQChr15g0496681' => 'han', 'HanXRQChr17g0557491' => 'han', 'HanXRQChr17g0557501' => 'han', 'Haze_06809' => 'cav', 'Haze_12852' => 'cav', 'Haze_15850' => 'cav', 'Haze_23446' => 'cav', 'Haze_23942' => 'cav', 'Haze_23943' => 'cav', 'Hma1.2p1_0091F.1_g046450' => 'hma', 'Hma1.2p1_0128F.1_g059910' => 'hma', 'Hma1.2p1_0249F.1_g102260' => 'hma', 'Hma1.2p1_0453F.1_g156190' => 'hma', 'Hma1.2p1_0695F.1_g204380' => 'hma', 'Hma1.2p1_0749F.1_g212650' => 'hma', 'Hma1.2p1_2156F.1_g315420' => 'hma', 'Hma1.2p1_2686F.1_g326940' => 'hma', 'HPP92_006428' => 'vpl', 'HPP92_012069' => 'vpl', 'HPP92_014129' => 'vpl', 'HPP92_014133' => 'vpl', 'HPP92_017315' => 'vpl', 'HPP92_026445' => 'vpl', 'HPP92_026446' => 'vpl', 'Hund00774' => 'sun', 'Hund07682' => 'sun', 'Hund21413' => 'sun', 'Hund23462' => 'sun', 'Hund23463' => 'sun', 'Lalb_Chr03g0027911' => 'lal', 'Lalb_Chr13g0304271' => 'lal', 'Lalb_Chr19g0137471' => 'lal', 'Lalb_Chr22g0350651' => 'lal', 'Lalb_Chr24g0395151' => 'lal', 'Lj1A1231T40' => 'lonja', 'Lj1A221T48' => 'lonja', 'Lj1C924T12' => 'lonja', 'Lj2C993G6' => 'lonja', 'Lj3g0005790' => 'lja', 'Lj3g0015432' => 'lja', 'Lj3g0017722' => 'lja', 'Lj3g0018497' => 'lja', 'Lj4g0025071' => 'lja', 'Lsat_1_v5_gn_1_129680' => 'lsa', 'Lsat_1_v5_gn_2_25321' => 'lsa', 'Lsat_1_v5_gn_2_95461' => 'lsa', 'Lsat_1_v5_gn_4_159620' => 'lsa', 'Lsat_1_v5_gn_6_41301' => 'lsa', 'Lsat_1_v5_gn_6_74660' => 'lsa', 'Lsat_1_v5_gn_7_11520' => 'lsa', 'Lsat_1_v5_gn_9_67680' => 'lsa', 'Manes.04G008300' => 'mes', 'Manes.04G008400' => 'mes', 'Manes.04G026500' => 'mes', 'Manes.10G135300' => 'mes', 'Manes.11G157300' => 'mes', 'Manes.12G074000' => 'mes', 'Manes.16G006200' => 'mes', 'Manes.17G026400' => 'mes', 'Mapoly0024s0086' => 'mpo', 'Mapoly0024s0087' => 'mpo', 'Mapoly0071s0057' => 'mpo', 'Mapoly0204s0012' => 'mpo', 'MBI04_g37681_MAGBIO' => 'mbi', 'MBI05_g17779_MAGBIO' => 'mbi', 'MBI12_g31184_MAGBIO' => 'mbi', 'MBI17_g11083_MAGBIO' => 'mbi', 'MBI18_g03883_MAGBIO' => 'mbi', 'MBI18_g28940_MAGBIO' => 'mbi', 'MCO01G690' => 'mco', 'MD03G1109900' => 'mdo', 'MD03G1134800' => 'mdo', 'MD05G1348000' => 'mdo', 'MD10G1322400' => 'mdo', 'MD11G1123300' => 'mdo', 'MD11G1157600' => 'mdo', 'Medtr2g084875' => 'mtr', 'Medtr2g088130' => 'mtr', 'Medtr4g055310' => 'mtr', 'Medtr4g061070' => 'mtr', 'Medtr4g132250' => 'mtr', 'MELO3C004795.2' => 'cme', 'MELO3C004797.2' => 'cme', 'MELO3C007396.2' => 'cme', 'MELO3C019277.2' => 'cme', 'MELO3C021449.2' => 'cme', 'MELO3C025736.2' => 'cme', 'Migut.D02175' => 'egut', 'Migut.H01573' => 'egut', 'Migut.M01327' => 'egut', 'Migut.N02513' => 'egut', 'MSTRG.14638' => 'ama', 'MSTRG.18632' => 'ama', 'MSTRG.7203' => 'ama', 'Nitab4.5_0000533g0140' => 'nta', 'Nitab4.5_0000888g0150' => 'nta', 'Nitab4.5_0001453g0040' => 'nta', 'Nitab4.5_0002827g0090' => 'nta', 'Nitab4.5_0003082g0040' => 'nta', 'Nitab4.5_0007799g0040' => 'nta', 'Nitab4.5_0008983g0010' => 'nta', 'Nitab4.5_0009017g0020' => 'nta', 'Nn1g02132' => 'nnu', 'Nn1g03492' => 'nnu', 'Nn1g03493' => 'nnu', 'Nn1g03494' => 'nnu', 'Nn1g07164' => 'nnu', 'Nn1g07291' => 'nnu', 'Nn2g10655' => 'nnu', 'Nn2g11652' => 'nnu', 'Nn2g14008' => 'nnu', 'Nn3g17476' => 'nnu', 'Nn3g17477' => 'nnu', 'Nn4g22370' => 'nnu', 'Nn4g25255' => 'nnu', 'Nn5g27755' => 'nnu', 'Nn6g34260' => 'nnu', 'Nn6g35041' => 'nnu', 'Oeu005924.1' => 'oeu', 'Oeu008383.1' => 'oeu', 'Oeu014928.1' => 'oeu', 'Oeu019889.1' => 'oeu', 'Oeu022271.1' => 'oeu', 'Oeu025271.1' => 'oeu', 'Oeu036302.1' => 'oeu', 'Oeu044100.1' => 'oeu', 'Os01g0528300' => 'osa', 'Os03g0286200' => 'osa', 'Os04g0406600' => 'osa', 'Os07g0512000' => 'osa', 'Os07g0694600' => 'osa', 'Os08g0411000' => 'osa', 'Os09g0565700' => 'osa', 'Os09g0566050' => 'osa', 'Os10g0523700' => 'osa', 'Peaxi162Scf00002g00514' => 'pax', 'Peaxi162Scf00047g01817' => 'pax', 'Peaxi162Scf00114g00001' => 'pax', 'Peaxi162Scf00147g00613' => 'pax', 'Peaxi162Scf00389g00425' => 'pax', 'PGR042G1139' => 'pgr', 'PGR042G3273' => 'pgr', 'PGR102G2180' => 'pgr', 'PGR119G0234' => 'pgr', 'PGR119G0668' => 'pgr', 'PGSC0003DMG400007122' => 'stu', 'PGSC0003DMG400016478' => 'stu', 'PGSC0003DMG400025374' => 'stu', 'PGSC0003DMG400026536' => 'stu', 'Phvul.003G079600' => 'pvu', 'Phvul.005G115600' => 'pvu', 'Phvul.005G127100' => 'pvu', 'Phvul.006G149500' => 'pvu', 'Phvul.006G149600' => 'pvu', 'Phvul.011G071800' => 'pvu', 'Phvul.011G090400' => 'pvu', 'Potri.004G013400' => 'ptr', 'Potri.004G188100' => 'ptr', 'Potri.008G195500' => 'ptr', 'Potri.009G148800' => 'ptr', 'Potri.011G004700' => 'ptr', 'Pp3c17_22810' => 'ppa', 'Pp3c18_4480' => 'ppa', 'Pp3c19_13030' => 'ppa', 'Pp3c1_33620' => 'ppa', 'Pp3c2_9380' => 'ppa', 'PRCOL_00001023' => 'pco', 'Prupe.3G216300' => 'ppe', 'Prupe.4G019500' => 'ppe', 'Prupe.6G092500' => 'ppe', 'Prupe.6G119200' => 'ppe', 'Psat0s1945g0080' => 'psa', 'Psat0s4167g0040' => 'psa', 'Psat1g185800' => 'psa', 'Psat4g006440' => 'psa', 'Psat4g006480' => 'psa', 'Psat4g168120' => 'psa', 'Psat5g255680' => 'psa', 'Psat5g261760' => 'psa', 'Psat7g222120' => 'psa', 'PSO063G7252' => 'pso', 'PSO170G4778' => 'pso', 'PSO210G2249' => 'pso', 'PSO339G2411' => 'pso', 'PSO339G2457' => 'pso', 'PSO339G2854' => 'pso', 'PSO339G4288' => 'pso', 'PSO339G4615' => 'pso', 'PSO384G2796' => 'pso', 'PSO384G2940' => 'pso', 'PSO384G4227' => 'pso', 'PSO478G1425' => 'pso', 'PSO541G3863' => 'pso', 'PSO675G0507' => 'pso', 'PSO782G0338' => 'pso', 'PSO832G0644' => 'pso', 'QL01p013664' => 'qlo', 'QL01p036598' => 'qlo', 'QL05p072984' => 'qlo', 'QL08p005768' => 'qlo', 'QL08p032743' => 'qlo', 'QL93p0073_0439' => 'qlo', 'QL93p0073_0444' => 'qlo', 'RcHm_v2.0_Chr5g0002851' => 'rch', 'RcHm_v2.0_Chr5g0055201' => 'rch', 'RcHm_v2.0_Chr5g0061191' => 'rch', 'RcHm_v2.0_Chr7g0203231' => 'rch', 'Rhsim01G0208100' => 'rsi', 'Rhsim01G0208200' => 'rsi', 'Rhsim02G0106500' => 'rsi', 'Rhsim03G0107900' => 'rsi', 'Rhsim06G0163400' => 'rsi', 'Rhsim13G0105200' => 'rsi', 'Sabra04G0006300' => 'sbr', 'Sabra04G0127000' => 'sbr', 'Sabra08G0148700' => 'sbr', 'Sabra09G0117400' => 'sbr', 'SalBow1G3326' => 'sbo', 'SalBow3G3228' => 'sbo', 'SalBow6G1634' => 'sbo', 'SalBow6G3603' => 'sbo', 'SalBow6G5266' => 'sbo', 'SalBow7G2265' => 'sbo', 'SalBow8G0850' => 'sbo', 'SalBow8G2592' => 'sbo', 'Sc05g0009240' => 'sci', 'Sc12g0002300' => 'sci', 'Sc21g0000100' => 'sci', 'Sc21g0004720' => 'sci', 'Sed0002949' => 'sed', 'Sed0004114' => 'sed', 'Sed0004306' => 'sed', 'Sed0006172' => 'sed', 'Sed0008413' => 'sed', 'Sed0013809' => 'sed', 'Sed0019556' => 'sed', 'SEGI_03570' => 'sgi', 'SEGI_07859' => 'sgi', 'SEGI_15042' => 'sgi', 'SEGI_16263' => 'sgi', 'SEGI_16552' => 'sgi', 'SEGI_24331' => 'sgi', 'SEGI_27316' => 'sgi', 'SEGI_29521' => 'sgi', 'SEGI_41342' => 'sgi', 'SGA_v2.0_scaffold27G11617' => 'sas', 'SGA_v2.0_scaffold316G48428' => 'sas', 'SGA_v2.0_scaffold49G18261' => 'sas', 'SGA_v2.0_scaffold7G03831' => 'sas', 'SGA_v2.0_scaffold93G28359' => 'sas', 'SHI02210' => 'shi', 'SHI06028' => 'shi', 'SHI06321' => 'shi', 'SMO111G0012' => 'smo', 'SMO228G0080' => 'smo', 'SMO356G0756' => 'smo', 'Solyc02g080620.3' => 'sly', 'Solyc06g074530.1' => 'sly', 'Solyc11g066890.1' => 'sly', 'Solyc11g072520.3' => 'sly', 'Sopen02g025330' => 'spe', 'Sopen06g031000' => 'spe', 'Sopen09g008240' => 'spe', 'Sopen09g025210' => 'spe', 'Sopen11g026600' => 'spe', 'Sopen11g030170' => 'spe', 'Sp1g10420' => 'spa', 'Sp3g06570' => 'spa', 'Sp4g10660' => 'spa', 'Sp5g16460' => 'spa', 'Sp6g22710' => 'spa', 'TAR365G0112' => 'tar', 'TAR369G0717' => 'tar', 'TAR374G0976' => 'tar', 'TAR623G1128' => 'tar', 'TAR626G1937' => 'tar', 'TAR627G0123' => 'tar', 'TAR628G0305' => 'tar', 'TAR636G1176' => 'tar', 'TAR636G2442' => 'tar', 'THA.LOC104800556' => 'tha', 'THA.LOC104809501' => 'tha', 'THA.LOC104815126' => 'tha', 'THA.LOC104815732' => 'tha', 'THA.LOC104823528' => 'tha', 'Thecc.02G365600' => 'tca', 'Thecc.06G222300' => 'tca', 'Thecc.09G261800' => 'tca', 'Thecc.09G291400' => 'tca', 'Thhalv10003028m.g' => 'esa', 'Thhalv10007886m.g' => 'esa', 'Thhalv10016085m.g' => 'esa', 'Thhalv10016681m.g' => 'esa', 'Thhalv10020951m.g' => 'esa', 'TPR.G15598' => 'tpr', 'TPR.G29305' => 'tpr', 'TPR.G32395' => 'tpr', 'TPR.G36998' => 'tpr', 'TPR.G4227' => 'tpr', 'TWI18G1433' => 'twi', 'TWI31G0755' => 'twi', 'TWI38G0912' => 'twi', 'TWI75G1097' => 'twi', 'TWI75G1619' => 'twi', 'TWI79G1336' => 'twi', 'unitig_0.g943' => 'ugi', 'unitig_0.g944' => 'ugi', 'unitig_22.g6646' => 'ugi', 'unitig_37.g12681' => 'ugi', 'unitig_8.g3290' => 'ugi', 'vmacro03278' => 'vma', 'vmacro12197' => 'vma', 'vmacro14478' => 'vma', 'vmacro15787' => 'vma', 'vmacro15789' => 'vma', 'vmacro15790' => 'vma', 'vmacro15806' => 'vma', 'vmacro22907' => 'vma', 'vmacro22908' => 'vma', 'vmacro22909' => 'vma', 'vmacro23108' => 'vma', 'VMungo0540G0540' => 'vmu', 'VMungo0540G2468' => 'vmu', 'VMungo1080G0390' => 'vmu', 'VMungo1080G1165' => 'vmu', 'VMungo1127G0170' => 'vmu', 'VMungo1127G2099' => 'vmu', 'VMungo1215G3013' => 'vmu', 'Zm00001eb013110' => 'zma', 'Zm00001eb084260' => 'zma', 'Zm00001eb096110' => 'zma', 'Zm00001eb217510' => 'zma', 'Zm00001eb322550' => 'zma', 'Zm00001eb390770' => 'zma', 'Zm00001eb397170' => 'zma', 'Zm00001eb404610' => 'zma', 'Zm00001eb421790' => 'zma' ), 'gf_id' => 'HOM05D000911', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000911' ), 'data_identifier' => 'HOM05D000911', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000911', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27780' => 'bna', 'A03p35380' => 'bna', 'A04p21160' => 'bna', 'A05p40570' => 'bna', 'A06p26900' => 'bna', 'A08p33230' => 'bna', 'A09p65960' => 'bna', 'A10p18290' => 'bna', 'Aa31LG1G12990' => 'aar', 'Aa31LG1G2980' => 'aar', 'Aa31LG4G14320' => 'aar', 'Aa31LG7G11800' => 'aar', 'Aa31sc36G50' => 'aar', 'Aa31sc36G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3721' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5459' => 'aag', 'Actinidia03028' => 'ach', 'Actinidia03753' => 'ach', 'Actinidia04187' => 'ach', 'Actinidia05509' => 'ach', 'Actinidia24180' => 'ach', 'Actinidia26906' => 'ach', 'Actinidia37097' => 'ach', 'Actinidia38249' => 'ach', 'Ah.01g003470' => 'amhyb', 'Ah.01g004580' => 'amhyb', 'Ah.01g014850' => 'amhyb', 'Ah.01g016830' => 'amhyb', 'Ah.14g088000' => 'amhyb', 'AL1G22980' => 'aly', 'AL3G18990' => 'aly', 'AL4G22440' => 'aly', 'AL4G33180' => 'aly', 'AL5G22920' => 'aly', 'AL6G33660' => 'aly', 'AL8G20720' => 'aly', 'Aqoxy1G00935' => 'aox', 'Aqoxy1G02094' => 'aox', 'Aqoxy2G01239' => 'aox', 'Aqoxy4G01870' => 'aox', 'Aqoxy7G00450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.36ZVTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71EM27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5D6C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH3WRE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3NCM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RIM768' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YB5YRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z36GDV' => 'arhy', 'AT1G08250' => 'ath', 'AT1G11790' => 'ath', 'AT2G27820' => 'ath', 'AT3G07630' => 'ath', 'AT3G44720' => 'ath', 'AT5G22630' => 'ath', 'ATR0693G304' => 'atr', 'ATR0794G109' => 'atr', 'ATR0820G120' => 'atr', 'ATR1159G064' => 'atr', 'Atru.chr10.2239' => 'acertr', 'Atru.chr3.3371' => 'acertr', 'Atru.chr6.3202' => 'acertr', 'AUR62006499' => 'cqu', 'AUR62012718' => 'cqu', 'AUR62021938' => 'cqu', 'AUR62023932' => 'cqu', 'AUR62025034' => 'cqu', 'AUR62025035' => 'cqu', 'AUR62038307' => 'cqu', 'AUR62043466' => 'cqu', 'BcaB02g10748' => 'bca', 'BcaB03g13231' => 'bca', 'BcaB03g14689' => 'bca', 'BcaB05g22716' => 'bca', 'BcaB06g28172' => 'bca', 'BcaB08g36413' => 'bca', 'BcaC01g02186' => 'bca', 'BcaC01g04272' => 'bca', 'BcaC02g08080' => 'bca', 'BcaC02g08227' => 'bca', 'BcaC03g13901' => 'bca', 'BcaC04g19593' => 'bca', 'BcaC04g20874' => 'bca', 'BcaC05g29557' => 'bca', 'BcaC06g35505' => 'bca', 'BcaC07g41954' => 'bca', 'BcaC07g41955' => 'bca', 'BcaC07g41956' => 'bca', 'BcaC07g42519' => 'bca', 'BcaC07g42520' => 'bca', 'BcaC07g42523' => 'bca', 'BcaC07g42524' => 'bca', 'BcaC07g42525' => 'bca', 'BcaC08g47480' => 'bca', 'BcaC08g47481' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00530' => 'bna', 'BolC2t07178H' => 'bol', 'BolC3t16567H' => 'bol', 'BolC4t27234H' => 'bol', 'BolC5t29728H' => 'bol', 'BolC5t34622H' => 'bol', 'BolC6t40321H' => 'bol', 'BolC7t42028H' => 'bol', 'BolC8t49125H' => 'bol', 'BolC8t52538H' => 'bol', 'BolC8t52539H' => 'bol', 'BolC9t56681H' => 'bol', 'BolC9t58266H' => 'bol', 'BolSC21t60294H' => 'bol', 'BraA02t05670Z' => 'bra', 'BraA03t12716Z' => 'bra', 'BraA04t17685Z' => 'bra', 'BraA05t22788Z' => 'bra', 'BraA06t24032Z' => 'bra', 'BraA06t25625Z' => 'bra', 'BraA07t27930Z' => 'bra', 'BraA08t35242Z' => 'bra', 'BraA09t38609Z' => 'bra', 'BraA10t43905Z' => 'bra', 'C02p11060' => 'bna', 'C03p42990' => 'bna', 'C03p67310' => 'bna', 'C04p56990' => 'bna', 'C04p58660' => 'bna', 'C05p09890' => 'bna', 'C05p59680' => 'bna', 'C06p19830' => 'bna', 'C06p53040' => 'bna', 'C07p15230' => 'bna', 'C08p50070' => 'bna', 'C08p50090' => 'bna', 'C09p38330' => 'bna', 'C09p53940' => 'bna', 'CAN.G1014.1' => 'can', 'CAN.G644.30' => 'can', 'CAN.G84.47' => 'can', 'CAN.G919.8' => 'can', 'CANSAT54G0113' => 'cansat', 'CANSAT54G1286' => 'cansat', 'CANSAT64G1020' => 'cansat', 'CARHR008080' => 'chi', 'CARHR008090' => 'chi', 'CARHR012130' => 'chi', 'CARHR038390' => 'chi', 'CARHR082330' => 'chi', 'CARHR120520' => 'chi', 'CARHR151470' => 'chi', 'CARHR190950' => 'chi', 'Carub.0001s0760' => 'cru', 'Carub.0001s1146' => 'cru', 'Carub.0003s0721' => 'cru', 'Carub.0004s0858' => 'cru', 'Carub.0005s1040' => 'cru', 'Carub.0006s2035' => 'cru', 'Carub.0015s0005' => 'cru', 'Ca_01607_v3' => 'car', 'Ca_01677_v3' => 'car', 'Ca_06087_v3' => 'car', 'Ca_19238_v3' => 'car', 'Ca_19373_v3' => 'car', 'Ca_21079_v3' => 'car', 'CBR_g54016' => 'cbr', 'CBR_g54018' => 'cbr', 'CBR_g54020' => 'cbr', 'Cc01_g09780' => 'ccan', 'Cc01_g11680' => 'ccan', 'Cc02_g15610' => 'ccan', 'Cc05_g04350' => 'ccan', 'Cc09_g01580' => 'ccan', 'CDE01G0795' => 'cde', 'CDE02G2024' => 'cde', 'CDE02G2260' => 'cde', 'CDE02G4561' => 'cde', 'CDE05G2733' => 'cde', 'CDE05G3422' => 'cde', 'CDE06G2003' => 'cde', 'CDE08G0576' => 'cde', 'CDE09G0048' => 'cde', 'CDE11G0805' => 'cde', 'Cfa003644' => 'cfa', 'Cfa006290' => 'cfa', 'Cfa010080' => 'cfa', 'Cfa011376' => 'cfa', 'Cfa011576' => 'cfa', 'Cfa011577' => 'cfa', 'Cfa014389' => 'cfa', 'Ciclev10006044m.g' => 'ccl', 'Ciclev10006954m.g' => 'ccl', 'Ciclev10015131m.g' => 'ccl', 'Ciclev10015580m.g' => 'ccl', 'Ciclev10028359m.g' => 'ccl', 'Ciclev10028573m.g' => 'ccl', 'CiPaw.03G159300' => 'cil', 'CiPaw.04G115100' => 'cil', 'CiPaw.09G092800' => 'cil', 'CiPaw.10G071800' => 'cil', 'CiPaw.13G105800' => 'cil', 'CiPaw.13G141000' => 'cil', 'CiPaw.14G103400' => 'cil', 'ClCG01G012700' => 'cla', 'ClCG01G012720' => 'cla', 'ClCG01G021920' => 'cla', 'ClCG02G008870' => 'cla', 'ClCG02G020840' => 'cla', 'ClCG02G021930' => 'cla', 'COL.COLO4_19302' => 'col', 'COL.COLO4_25262' => 'col', 'COL.COLO4_31788' => 'col', 'Cpa.g.c34684' => 'cpa', 'Cpa.g.c36520.1' => 'cpa', 'Cpa.g.c45626' => 'cpa', 'Cpa.g.sc121.17' => 'cpa', 'Cpa.g.sc13.22' => 'cpa', 'Cpa.g.sc87.88' => 'cpa', 'Cre06.g261800' => 'cre', 'CsaV3_1G014500' => 'csa', 'CsaV3_1G014510' => 'csa', 'CsaV3_2G034880' => 'csa', 'CsaV3_6G014760' => 'csa', 'CsaV3_6G021500' => 'csa', 'CsaV3_6G048980' => 'csa', 'CSS0002511' => 'camsi', 'CSS0007556' => 'camsi', 'CSS0008532' => 'camsi', 'CSS0009709' => 'camsi', 'CSS0010486' => 'camsi', 'CSS0016768' => 'camsi', 'CSS0023512' => 'camsi', 'CSS0025341' => 'camsi', 'CSS0027999' => 'camsi', 'CSS0028944' => 'camsi', 'CSS0032292' => 'camsi', 'CSS0032464' => 'camsi', 'CSS0037153' => 'camsi', 'CSS0039256' => 'camsi', 'CSS0048392' => 'camsi', 'CSS0050458' => 'camsi', 'DCAR_004224' => 'dca', 'DCAR_006147' => 'dca', 'DCAR_006465' => 'dca', 'DCAR_008159' => 'dca', 'DCAR_012164' => 'dca', 'DCAR_019764' => 'dca', 'Dinv05418' => 'din', 'Dinv10839' => 'din', 'Dinv12521' => 'din', 'Dinv13900' => 'din', 'Dinv29426' => 'din', 'Duzib150G0263' => 'dzi', 'Duzib168G1178' => 'dzi', 'Duzib168G1924' => 'dzi', 'Duzib170G0299' => 'dzi', 'Duzib170G0813' => 'dzi', 'Duzib235G1128' => 'dzi', 'Duzib248G1060' => 'dzi', 'ECA232G1910' => 'eca', 'ECA233G4621' => 'eca', 'ECA238G1216' => 'eca', 'ECA238G1784' => 'eca', 'ECA248G1242' => 'eca', 'EL10Ac8g20071' => 'bvu', 'EL10Ac9g21086' => 'bvu', 'EL10Ac9g22407' => 'bvu', 'EL10Ac9g22412' => 'bvu', 'Eucgr.A01119' => 'egr', 'Eucgr.E04043' => 'egr', 'Eucgr.J00428' => 'egr', 'Eucgr.J00958' => 'egr', 'FAN11G3091' => 'fan', 'FAN11G3651' => 'fan', 'FAN16G2566' => 'fan', 'FAN21G3155' => 'fan', 'FAN21G3400' => 'fan', 'FAN21G3543' => 'fan', 'FAN25G0234' => 'fan', 'FAN25G1422' => 'fan', 'FAN25G3392' => 'fan', 'FvH4_3g01940' => 'fve', 'FvH4_3g29870' => 'fve', 'FvH4_3g33680' => 'fve', 'Glyma.09G004200' => 'gma', 'Glyma.11G151288' => 'gma', 'Glyma.11G189100' => 'gma', 'Glyma.12G072500' => 'gma', 'Glyma.12G085500' => 'gma', 'Glyma.12G181800' => 'gma', 'Glyma.12G193000' => 'gma', 'Glyma.13G309300' => 'gma', 'Glyma.13G319000' => 'gma', 'Glyma.17G012600' => 'gma', 'Gohir.A06G148600' => 'ghi', 'Gohir.A07G115800' => 'ghi', 'Gohir.A08G003600' => 'ghi', 'Gohir.A09G093300' => 'ghi', 'Gohir.A09G105400' => 'ghi', 'Gohir.A09G105500' => 'ghi', 'Gohir.D06G154600' => 'ghi', 'Gohir.D07G120200' => 'ghi', 'Gohir.D08G013900' => 'ghi', 'Gohir.D09G093100' => 'ghi', 'Gohir.D09G102200' => 'ghi', 'Gohir.D09G102300' => 'ghi', 'Gorai.001G129400' => 'gra', 'Gorai.004G008200' => 'gra', 'Gorai.006G109800' => 'gra', 'Gorai.006G119500' => 'gra', 'Gorai.006G121300' => 'gra', 'Gorai.010G180700' => 'gra', 'GSVIVG01012716001' => 'vvi', 'GSVIVG01025118001' => 'vvi', 'GSVIVG01030439001' => 'vvi', 'GSVIVG01031397001' => 'vvi', 'HanXRQChr01g0004201' => 'han', 'HanXRQChr02g0054941' => 'han', 'HanXRQChr05g0141811' => 'han', 'HanXRQChr07g0197751' => 'han', 'HanXRQChr11g0346691' => 'han', 'HanXRQChr13g0396971' => 'han', 'HanXRQChr14g0432951' => 'han', 'HanXRQChr14g0452001' => 'han', 'HanXRQChr15g0496681' => 'han', 'HanXRQChr17g0557491' => 'han', 'HanXRQChr17g0557501' => 'han', 'Haze_06809' => 'cav', 'Haze_12852' => 'cav', 'Haze_15850' => 'cav', 'Haze_23446' => 'cav', 'Haze_23942' => 'cav', 'Haze_23943' => 'cav', 'Hma1.2p1_0091F.1_g046450' => 'hma', 'Hma1.2p1_0128F.1_g059910' => 'hma', 'Hma1.2p1_0249F.1_g102260' => 'hma', 'Hma1.2p1_0453F.1_g156190' => 'hma', 'Hma1.2p1_0695F.1_g204380' => 'hma', 'Hma1.2p1_0749F.1_g212650' => 'hma', 'Hma1.2p1_2156F.1_g315420' => 'hma', 'Hma1.2p1_2686F.1_g326940' => 'hma', 'HPP92_006428' => 'vpl', 'HPP92_012069' => 'vpl', 'HPP92_014129' => 'vpl', 'HPP92_014133' => 'vpl', 'HPP92_017315' => 'vpl', 'HPP92_026445' => 'vpl', 'HPP92_026446' => 'vpl', 'Hund00774' => 'sun', 'Hund07682' => 'sun', 'Hund21413' => 'sun', 'Hund23462' => 'sun', 'Hund23463' => 'sun', 'Lalb_Chr03g0027911' => 'lal', 'Lalb_Chr13g0304271' => 'lal', 'Lalb_Chr19g0137471' => 'lal', 'Lalb_Chr22g0350651' => 'lal', 'Lalb_Chr24g0395151' => 'lal', 'Lj1A1231T40' => 'lonja', 'Lj1A221T48' => 'lonja', 'Lj1C924T12' => 'lonja', 'Lj2C993G6' => 'lonja', 'Lj3g0005790' => 'lja', 'Lj3g0015432' => 'lja', 'Lj3g0017722' => 'lja', 'Lj3g0018497' => 'lja', 'Lj4g0025071' => 'lja', 'Lsat_1_v5_gn_1_129680' => 'lsa', 'Lsat_1_v5_gn_2_25321' => 'lsa', 'Lsat_1_v5_gn_2_95461' => 'lsa', 'Lsat_1_v5_gn_4_159620' => 'lsa', 'Lsat_1_v5_gn_6_41301' => 'lsa', 'Lsat_1_v5_gn_6_74660' => 'lsa', 'Lsat_1_v5_gn_7_11520' => 'lsa', 'Lsat_1_v5_gn_9_67680' => 'lsa', 'Manes.04G008300' => 'mes', 'Manes.04G008400' => 'mes', 'Manes.04G026500' => 'mes', 'Manes.10G135300' => 'mes', 'Manes.11G157300' => 'mes', 'Manes.12G074000' => 'mes', 'Manes.16G006200' => 'mes', 'Manes.17G026400' => 'mes', 'Mapoly0024s0086' => 'mpo', 'Mapoly0024s0087' => 'mpo', 'Mapoly0071s0057' => 'mpo', 'Mapoly0204s0012' => 'mpo', 'MBI04_g37681_MAGBIO' => 'mbi', 'MBI05_g17779_MAGBIO' => 'mbi', 'MBI12_g31184_MAGBIO' => 'mbi', 'MBI17_g11083_MAGBIO' => 'mbi', 'MBI18_g03883_MAGBIO' => 'mbi', 'MBI18_g28940_MAGBIO' => 'mbi', 'MCO01G690' => 'mco', 'MD03G1109900' => 'mdo', 'MD03G1134800' => 'mdo', 'MD05G1348000' => 'mdo', 'MD10G1322400' => 'mdo', 'MD11G1123300' => 'mdo', 'MD11G1157600' => 'mdo', 'Medtr2g084875' => 'mtr', 'Medtr2g088130' => 'mtr', 'Medtr4g055310' => 'mtr', 'Medtr4g061070' => 'mtr', 'Medtr4g132250' => 'mtr', 'MELO3C004795.2' => 'cme', 'MELO3C004797.2' => 'cme', 'MELO3C007396.2' => 'cme', 'MELO3C019277.2' => 'cme', 'MELO3C021449.2' => 'cme', 'MELO3C025736.2' => 'cme', 'Migut.D02175' => 'egut', 'Migut.H01573' => 'egut', 'Migut.M01327' => 'egut', 'Migut.N02513' => 'egut', 'MSTRG.14638' => 'ama', 'MSTRG.18632' => 'ama', 'MSTRG.7203' => 'ama', 'Nitab4.5_0000533g0140' => 'nta', 'Nitab4.5_0000888g0150' => 'nta', 'Nitab4.5_0001453g0040' => 'nta', 'Nitab4.5_0002827g0090' => 'nta', 'Nitab4.5_0003082g0040' => 'nta', 'Nitab4.5_0007799g0040' => 'nta', 'Nitab4.5_0008983g0010' => 'nta', 'Nitab4.5_0009017g0020' => 'nta', 'Nn1g02132' => 'nnu', 'Nn1g03492' => 'nnu', 'Nn1g03493' => 'nnu', 'Nn1g03494' => 'nnu', 'Nn1g07164' => 'nnu', 'Nn1g07291' => 'nnu', 'Nn2g10655' => 'nnu', 'Nn2g11652' => 'nnu', 'Nn2g14008' => 'nnu', 'Nn3g17476' => 'nnu', 'Nn3g17477' => 'nnu', 'Nn4g22370' => 'nnu', 'Nn4g25255' => 'nnu', 'Nn5g27755' => 'nnu', 'Nn6g34260' => 'nnu', 'Nn6g35041' => 'nnu', 'Oeu005924.1' => 'oeu', 'Oeu008383.1' => 'oeu', 'Oeu014928.1' => 'oeu', 'Oeu019889.1' => 'oeu', 'Oeu022271.1' => 'oeu', 'Oeu025271.1' => 'oeu', 'Oeu036302.1' => 'oeu', 'Oeu044100.1' => 'oeu', 'Os01g0528300' => 'osa', 'Os03g0286200' => 'osa', 'Os04g0406600' => 'osa', 'Os07g0512000' => 'osa', 'Os07g0694600' => 'osa', 'Os08g0411000' => 'osa', 'Os09g0565700' => 'osa', 'Os09g0566050' => 'osa', 'Os10g0523700' => 'osa', 'Peaxi162Scf00002g00514' => 'pax', 'Peaxi162Scf00047g01817' => 'pax', 'Peaxi162Scf00114g00001' => 'pax', 'Peaxi162Scf00147g00613' => 'pax', 'Peaxi162Scf00389g00425' => 'pax', 'PGR042G1139' => 'pgr', 'PGR042G3273' => 'pgr', 'PGR102G2180' => 'pgr', 'PGR119G0234' => 'pgr', 'PGR119G0668' => 'pgr', 'PGSC0003DMG400007122' => 'stu', 'PGSC0003DMG400016478' => 'stu', 'PGSC0003DMG400025374' => 'stu', 'PGSC0003DMG400026536' => 'stu', 'Phvul.003G079600' => 'pvu', 'Phvul.005G115600' => 'pvu', 'Phvul.005G127100' => 'pvu', 'Phvul.006G149500' => 'pvu', 'Phvul.006G149600' => 'pvu', 'Phvul.011G071800' => 'pvu', 'Phvul.011G090400' => 'pvu', 'Potri.004G013400' => 'ptr', 'Potri.004G188100' => 'ptr', 'Potri.008G195500' => 'ptr', 'Potri.009G148800' => 'ptr', 'Potri.011G004700' => 'ptr', 'Pp3c17_22810' => 'ppa', 'Pp3c18_4480' => 'ppa', 'Pp3c19_13030' => 'ppa', 'Pp3c1_33620' => 'ppa', 'Pp3c2_9380' => 'ppa', 'PRCOL_00001023' => 'pco', 'Prupe.3G216300' => 'ppe', 'Prupe.4G019500' => 'ppe', 'Prupe.6G092500' => 'ppe', 'Prupe.6G119200' => 'ppe', 'Psat0s1945g0080' => 'psa', 'Psat0s4167g0040' => 'psa', 'Psat1g185800' => 'psa', 'Psat4g006440' => 'psa', 'Psat4g006480' => 'psa', 'Psat4g168120' => 'psa', 'Psat5g255680' => 'psa', 'Psat5g261760' => 'psa', 'Psat7g222120' => 'psa', 'PSO063G7252' => 'pso', 'PSO170G4778' => 'pso', 'PSO210G2249' => 'pso', 'PSO339G2411' => 'pso', 'PSO339G2457' => 'pso', 'PSO339G2854' => 'pso', 'PSO339G4288' => 'pso', 'PSO339G4615' => 'pso', 'PSO384G2796' => 'pso', 'PSO384G2940' => 'pso', 'PSO384G4227' => 'pso', 'PSO478G1425' => 'pso', 'PSO541G3863' => 'pso', 'PSO675G0507' => 'pso', 'PSO782G0338' => 'pso', 'PSO832G0644' => 'pso', 'QL01p013664' => 'qlo', 'QL01p036598' => 'qlo', 'QL05p072984' => 'qlo', 'QL08p005768' => 'qlo', 'QL08p032743' => 'qlo', 'QL93p0073_0439' => 'qlo', 'QL93p0073_0444' => 'qlo', 'RcHm_v2.0_Chr5g0002851' => 'rch', 'RcHm_v2.0_Chr5g0055201' => 'rch', 'RcHm_v2.0_Chr5g0061191' => 'rch', 'RcHm_v2.0_Chr7g0203231' => 'rch', 'Rhsim01G0208100' => 'rsi', 'Rhsim01G0208200' => 'rsi', 'Rhsim02G0106500' => 'rsi', 'Rhsim03G0107900' => 'rsi', 'Rhsim06G0163400' => 'rsi', 'Rhsim13G0105200' => 'rsi', 'Sabra04G0006300' => 'sbr', 'Sabra04G0127000' => 'sbr', 'Sabra08G0148700' => 'sbr', 'Sabra09G0117400' => 'sbr', 'SalBow1G3326' => 'sbo', 'SalBow3G3228' => 'sbo', 'SalBow6G1634' => 'sbo', 'SalBow6G3603' => 'sbo', 'SalBow6G5266' => 'sbo', 'SalBow7G2265' => 'sbo', 'SalBow8G0850' => 'sbo', 'SalBow8G2592' => 'sbo', 'Sc05g0009240' => 'sci', 'Sc12g0002300' => 'sci', 'Sc21g0000100' => 'sci', 'Sc21g0004720' => 'sci', 'Sed0002949' => 'sed', 'Sed0004114' => 'sed', 'Sed0004306' => 'sed', 'Sed0006172' => 'sed', 'Sed0008413' => 'sed', 'Sed0013809' => 'sed', 'Sed0019556' => 'sed', 'SEGI_03570' => 'sgi', 'SEGI_07859' => 'sgi', 'SEGI_15042' => 'sgi', 'SEGI_16263' => 'sgi', 'SEGI_16552' => 'sgi', 'SEGI_24331' => 'sgi', 'SEGI_27316' => 'sgi', 'SEGI_29521' => 'sgi', 'SEGI_41342' => 'sgi', 'SGA_v2.0_scaffold27G11617' => 'sas', 'SGA_v2.0_scaffold316G48428' => 'sas', 'SGA_v2.0_scaffold49G18261' => 'sas', 'SGA_v2.0_scaffold7G03831' => 'sas', 'SGA_v2.0_scaffold93G28359' => 'sas', 'SHI02210' => 'shi', 'SHI06028' => 'shi', 'SHI06321' => 'shi', 'SMO111G0012' => 'smo', 'SMO228G0080' => 'smo', 'SMO356G0756' => 'smo', 'Solyc02g080620.3' => 'sly', 'Solyc06g074530.1' => 'sly', 'Solyc11g066890.1' => 'sly', 'Solyc11g072520.3' => 'sly', 'Sopen02g025330' => 'spe', 'Sopen06g031000' => 'spe', 'Sopen09g008240' => 'spe', 'Sopen09g025210' => 'spe', 'Sopen11g026600' => 'spe', 'Sopen11g030170' => 'spe', 'Sp1g10420' => 'spa', 'Sp3g06570' => 'spa', 'Sp4g10660' => 'spa', 'Sp5g16460' => 'spa', 'Sp6g22710' => 'spa', 'TAR365G0112' => 'tar', 'TAR369G0717' => 'tar', 'TAR374G0976' => 'tar', 'TAR623G1128' => 'tar', 'TAR626G1937' => 'tar', 'TAR627G0123' => 'tar', 'TAR628G0305' => 'tar', 'TAR636G1176' => 'tar', 'TAR636G2442' => 'tar', 'THA.LOC104800556' => 'tha', 'THA.LOC104809501' => 'tha', 'THA.LOC104815126' => 'tha', 'THA.LOC104815732' => 'tha', 'THA.LOC104823528' => 'tha', 'Thecc.02G365600' => 'tca', 'Thecc.06G222300' => 'tca', 'Thecc.09G261800' => 'tca', 'Thecc.09G291400' => 'tca', 'Thhalv10003028m.g' => 'esa', 'Thhalv10007886m.g' => 'esa', 'Thhalv10016085m.g' => 'esa', 'Thhalv10016681m.g' => 'esa', 'Thhalv10020951m.g' => 'esa', 'TPR.G15598' => 'tpr', 'TPR.G29305' => 'tpr', 'TPR.G32395' => 'tpr', 'TPR.G36998' => 'tpr', 'TPR.G4227' => 'tpr', 'TWI18G1433' => 'twi', 'TWI31G0755' => 'twi', 'TWI38G0912' => 'twi', 'TWI75G1097' => 'twi', 'TWI75G1619' => 'twi', 'TWI79G1336' => 'twi', 'unitig_0.g943' => 'ugi', 'unitig_0.g944' => 'ugi', 'unitig_22.g6646' => 'ugi', 'unitig_37.g12681' => 'ugi', 'unitig_8.g3290' => 'ugi', 'vmacro03278' => 'vma', 'vmacro12197' => 'vma', 'vmacro14478' => 'vma', 'vmacro15787' => 'vma', 'vmacro15789' => 'vma', 'vmacro15790' => 'vma', 'vmacro15806' => 'vma', 'vmacro22907' => 'vma', 'vmacro22908' => 'vma', 'vmacro22909' => 'vma', 'vmacro23108' => 'vma', 'VMungo0540G0540' => 'vmu', 'VMungo0540G2468' => 'vmu', 'VMungo1080G0390' => 'vmu', 'VMungo1080G1165' => 'vmu', 'VMungo1127G0170' => 'vmu', 'VMungo1127G2099' => 'vmu', 'VMungo1215G3013' => 'vmu', 'Zm00001eb013110' => 'zma', 'Zm00001eb084260' => 'zma', 'Zm00001eb096110' => 'zma', 'Zm00001eb217510' => 'zma', 'Zm00001eb322550' => 'zma', 'Zm00001eb390770' => 'zma', 'Zm00001eb397170' => 'zma', 'Zm00001eb404610' => 'zma', 'Zm00001eb421790' => 'zma' ) $gf_id = 'HOM05D000911' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000911' ) $data_identifier = 'HOM05D000911' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 16, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 5, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 6, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 8, 'nnu' => (int) 16, 'oeu' => (int) 8, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 5, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 16, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421790' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000911', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27780' => 'bna', 'A03p35380' => 'bna', 'A04p21160' => 'bna', 'A05p40570' => 'bna', 'A06p26900' => 'bna', 'A08p33230' => 'bna', 'A09p65960' => 'bna', 'A10p18290' => 'bna', 'Aa31LG1G12990' => 'aar', 'Aa31LG1G2980' => 'aar', 'Aa31LG4G14320' => 'aar', 'Aa31LG7G11800' => 'aar', 'Aa31sc36G50' => 'aar', 'Aa31sc36G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3721' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5459' => 'aag', 'Actinidia03028' => 'ach', 'Actinidia03753' => 'ach', 'Actinidia04187' => 'ach', 'Actinidia05509' => 'ach', 'Actinidia24180' => 'ach', 'Actinidia26906' => 'ach', 'Actinidia37097' => 'ach', 'Actinidia38249' => 'ach', 'Ah.01g003470' => 'amhyb', 'Ah.01g004580' => 'amhyb', 'Ah.01g014850' => 'amhyb', 'Ah.01g016830' => 'amhyb', 'Ah.14g088000' => 'amhyb', 'AL1G22980' => 'aly', 'AL3G18990' => 'aly', 'AL4G22440' => 'aly', 'AL4G33180' => 'aly', 'AL5G22920' => 'aly', 'AL6G33660' => 'aly', 'AL8G20720' => 'aly', 'Aqoxy1G00935' => 'aox', 'Aqoxy1G02094' => 'aox', 'Aqoxy2G01239' => 'aox', 'Aqoxy4G01870' => 'aox', 'Aqoxy7G00450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.36ZVTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71EM27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5D6C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH3WRE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3NCM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RIM768' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YB5YRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z36GDV' => 'arhy', 'AT1G08250' => 'ath', 'AT1G11790' => 'ath', 'AT2G27820' => 'ath', 'AT3G07630' => 'ath', 'AT3G44720' => 'ath', 'AT5G22630' => 'ath', 'ATR0693G304' => 'atr', 'ATR0794G109' => 'atr', 'ATR0820G120' => 'atr', 'ATR1159G064' => 'atr', 'Atru.chr10.2239' => 'acertr', 'Atru.chr3.3371' => 'acertr', 'Atru.chr6.3202' => 'acertr', 'AUR62006499' => 'cqu', 'AUR62012718' => 'cqu', 'AUR62021938' => 'cqu', 'AUR62023932' => 'cqu', 'AUR62025034' => 'cqu', 'AUR62025035' => 'cqu', 'AUR62038307' => 'cqu', 'AUR62043466' => 'cqu', 'BcaB02g10748' => 'bca', 'BcaB03g13231' => 'bca', 'BcaB03g14689' => 'bca', 'BcaB05g22716' => 'bca', 'BcaB06g28172' => 'bca', 'BcaB08g36413' => 'bca', 'BcaC01g02186' => 'bca', 'BcaC01g04272' => 'bca', 'BcaC02g08080' => 'bca', 'BcaC02g08227' => 'bca', 'BcaC03g13901' => 'bca', 'BcaC04g19593' => 'bca', 'BcaC04g20874' => 'bca', 'BcaC05g29557' => 'bca', 'BcaC06g35505' => 'bca', 'BcaC07g41954' => 'bca', 'BcaC07g41955' => 'bca', 'BcaC07g41956' => 'bca', 'BcaC07g42519' => 'bca', 'BcaC07g42520' => 'bca', 'BcaC07g42523' => 'bca', 'BcaC07g42524' => 'bca', 'BcaC07g42525' => 'bca', 'BcaC08g47480' => 'bca', 'BcaC08g47481' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00530' => 'bna', 'BolC2t07178H' => 'bol', 'BolC3t16567H' => 'bol', 'BolC4t27234H' => 'bol', 'BolC5t29728H' => 'bol', 'BolC5t34622H' => 'bol', 'BolC6t40321H' => 'bol', 'BolC7t42028H' => 'bol', 'BolC8t49125H' => 'bol', 'BolC8t52538H' => 'bol', 'BolC8t52539H' => 'bol', 'BolC9t56681H' => 'bol', 'BolC9t58266H' => 'bol', 'BolSC21t60294H' => 'bol', 'BraA02t05670Z' => 'bra', 'BraA03t12716Z' => 'bra', 'BraA04t17685Z' => 'bra', 'BraA05t22788Z' => 'bra', 'BraA06t24032Z' => 'bra', 'BraA06t25625Z' => 'bra', 'BraA07t27930Z' => 'bra', 'BraA08t35242Z' => 'bra', 'BraA09t38609Z' => 'bra', 'BraA10t43905Z' => 'bra', 'C02p11060' => 'bna', 'C03p42990' => 'bna', 'C03p67310' => 'bna', 'C04p56990' => 'bna', 'C04p58660' => 'bna', 'C05p09890' => 'bna', 'C05p59680' => 'bna', 'C06p19830' => 'bna', 'C06p53040' => 'bna', 'C07p15230' => 'bna', 'C08p50070' => 'bna', 'C08p50090' => 'bna', 'C09p38330' => 'bna', 'C09p53940' => 'bna', 'CAN.G1014.1' => 'can', 'CAN.G644.30' => 'can', 'CAN.G84.47' => 'can', 'CAN.G919.8' => 'can', 'CANSAT54G0113' => 'cansat', 'CANSAT54G1286' => 'cansat', 'CANSAT64G1020' => 'cansat', 'CARHR008080' => 'chi', 'CARHR008090' => 'chi', 'CARHR012130' => 'chi', 'CARHR038390' => 'chi', 'CARHR082330' => 'chi', 'CARHR120520' => 'chi', 'CARHR151470' => 'chi', 'CARHR190950' => 'chi', 'Carub.0001s0760' => 'cru', 'Carub.0001s1146' => 'cru', 'Carub.0003s0721' => 'cru', 'Carub.0004s0858' => 'cru', 'Carub.0005s1040' => 'cru', 'Carub.0006s2035' => 'cru', 'Carub.0015s0005' => 'cru', 'Ca_01607_v3' => 'car', 'Ca_01677_v3' => 'car', 'Ca_06087_v3' => 'car', 'Ca_19238_v3' => 'car', 'Ca_19373_v3' => 'car', 'Ca_21079_v3' => 'car', 'CBR_g54016' => 'cbr', 'CBR_g54018' => 'cbr', 'CBR_g54020' => 'cbr', 'Cc01_g09780' => 'ccan', 'Cc01_g11680' => 'ccan', 'Cc02_g15610' => 'ccan', 'Cc05_g04350' => 'ccan', 'Cc09_g01580' => 'ccan', 'CDE01G0795' => 'cde', 'CDE02G2024' => 'cde', 'CDE02G2260' => 'cde', 'CDE02G4561' => 'cde', 'CDE05G2733' => 'cde', 'CDE05G3422' => 'cde', 'CDE06G2003' => 'cde', 'CDE08G0576' => 'cde', 'CDE09G0048' => 'cde', 'CDE11G0805' => 'cde', 'Cfa003644' => 'cfa', 'Cfa006290' => 'cfa', 'Cfa010080' => 'cfa', 'Cfa011376' => 'cfa', 'Cfa011576' => 'cfa', 'Cfa011577' => 'cfa', 'Cfa014389' => 'cfa', 'Ciclev10006044m.g' => 'ccl', 'Ciclev10006954m.g' => 'ccl', 'Ciclev10015131m.g' => 'ccl', 'Ciclev10015580m.g' => 'ccl', 'Ciclev10028359m.g' => 'ccl', 'Ciclev10028573m.g' => 'ccl', 'CiPaw.03G159300' => 'cil', 'CiPaw.04G115100' => 'cil', 'CiPaw.09G092800' => 'cil', 'CiPaw.10G071800' => 'cil', 'CiPaw.13G105800' => 'cil', 'CiPaw.13G141000' => 'cil', 'CiPaw.14G103400' => 'cil', 'ClCG01G012700' => 'cla', 'ClCG01G012720' => 'cla', 'ClCG01G021920' => 'cla', 'ClCG02G008870' => 'cla', 'ClCG02G020840' => 'cla', 'ClCG02G021930' => 'cla', 'COL.COLO4_19302' => 'col', 'COL.COLO4_25262' => 'col', 'COL.COLO4_31788' => 'col', 'Cpa.g.c34684' => 'cpa', 'Cpa.g.c36520.1' => 'cpa', 'Cpa.g.c45626' => 'cpa', 'Cpa.g.sc121.17' => 'cpa', 'Cpa.g.sc13.22' => 'cpa', 'Cpa.g.sc87.88' => 'cpa', 'Cre06.g261800' => 'cre', 'CsaV3_1G014500' => 'csa', 'CsaV3_1G014510' => 'csa', 'CsaV3_2G034880' => 'csa', 'CsaV3_6G014760' => 'csa', 'CsaV3_6G021500' => 'csa', 'CsaV3_6G048980' => 'csa', 'CSS0002511' => 'camsi', 'CSS0007556' => 'camsi', 'CSS0008532' => 'camsi', 'CSS0009709' => 'camsi', 'CSS0010486' => 'camsi', 'CSS0016768' => 'camsi', 'CSS0023512' => 'camsi', 'CSS0025341' => 'camsi', 'CSS0027999' => 'camsi', 'CSS0028944' => 'camsi', 'CSS0032292' => 'camsi', 'CSS0032464' => 'camsi', 'CSS0037153' => 'camsi', 'CSS0039256' => 'camsi', 'CSS0048392' => 'camsi', 'CSS0050458' => 'camsi', 'DCAR_004224' => 'dca', 'DCAR_006147' => 'dca', 'DCAR_006465' => 'dca', 'DCAR_008159' => 'dca', 'DCAR_012164' => 'dca', 'DCAR_019764' => 'dca', 'Dinv05418' => 'din', 'Dinv10839' => 'din', 'Dinv12521' => 'din', 'Dinv13900' => 'din', 'Dinv29426' => 'din', 'Duzib150G0263' => 'dzi', 'Duzib168G1178' => 'dzi', 'Duzib168G1924' => 'dzi', 'Duzib170G0299' => 'dzi', 'Duzib170G0813' => 'dzi', 'Duzib235G1128' => 'dzi', 'Duzib248G1060' => 'dzi', 'ECA232G1910' => 'eca', 'ECA233G4621' => 'eca', 'ECA238G1216' => 'eca', 'ECA238G1784' => 'eca', 'ECA248G1242' => 'eca', 'EL10Ac8g20071' => 'bvu', 'EL10Ac9g21086' => 'bvu', 'EL10Ac9g22407' => 'bvu', 'EL10Ac9g22412' => 'bvu', 'Eucgr.A01119' => 'egr', 'Eucgr.E04043' => 'egr', 'Eucgr.J00428' => 'egr', 'Eucgr.J00958' => 'egr', 'FAN11G3091' => 'fan', 'FAN11G3651' => 'fan', 'FAN16G2566' => 'fan', 'FAN21G3155' => 'fan', 'FAN21G3400' => 'fan', 'FAN21G3543' => 'fan', 'FAN25G0234' => 'fan', 'FAN25G1422' => 'fan', 'FAN25G3392' => 'fan', 'FvH4_3g01940' => 'fve', 'FvH4_3g29870' => 'fve', 'FvH4_3g33680' => 'fve', 'Glyma.09G004200' => 'gma', 'Glyma.11G151288' => 'gma', 'Glyma.11G189100' => 'gma', 'Glyma.12G072500' => 'gma', 'Glyma.12G085500' => 'gma', 'Glyma.12G181800' => 'gma', 'Glyma.12G193000' => 'gma', 'Glyma.13G309300' => 'gma', 'Glyma.13G319000' => 'gma', 'Glyma.17G012600' => 'gma', 'Gohir.A06G148600' => 'ghi', 'Gohir.A07G115800' => 'ghi', 'Gohir.A08G003600' => 'ghi', 'Gohir.A09G093300' => 'ghi', 'Gohir.A09G105400' => 'ghi', 'Gohir.A09G105500' => 'ghi', 'Gohir.D06G154600' => 'ghi', 'Gohir.D07G120200' => 'ghi', 'Gohir.D08G013900' => 'ghi', 'Gohir.D09G093100' => 'ghi', 'Gohir.D09G102200' => 'ghi', 'Gohir.D09G102300' => 'ghi', 'Gorai.001G129400' => 'gra', 'Gorai.004G008200' => 'gra', 'Gorai.006G109800' => 'gra', 'Gorai.006G119500' => 'gra', 'Gorai.006G121300' => 'gra', 'Gorai.010G180700' => 'gra', 'GSVIVG01012716001' => 'vvi', 'GSVIVG01025118001' => 'vvi', 'GSVIVG01030439001' => 'vvi', 'GSVIVG01031397001' => 'vvi', 'HanXRQChr01g0004201' => 'han', 'HanXRQChr02g0054941' => 'han', 'HanXRQChr05g0141811' => 'han', 'HanXRQChr07g0197751' => 'han', 'HanXRQChr11g0346691' => 'han', 'HanXRQChr13g0396971' => 'han', 'HanXRQChr14g0432951' => 'han', 'HanXRQChr14g0452001' => 'han', 'HanXRQChr15g0496681' => 'han', 'HanXRQChr17g0557491' => 'han', 'HanXRQChr17g0557501' => 'han', 'Haze_06809' => 'cav', 'Haze_12852' => 'cav', 'Haze_15850' => 'cav', 'Haze_23446' => 'cav', 'Haze_23942' => 'cav', 'Haze_23943' => 'cav', 'Hma1.2p1_0091F.1_g046450' => 'hma', 'Hma1.2p1_0128F.1_g059910' => 'hma', 'Hma1.2p1_0249F.1_g102260' => 'hma', 'Hma1.2p1_0453F.1_g156190' => 'hma', 'Hma1.2p1_0695F.1_g204380' => 'hma', 'Hma1.2p1_0749F.1_g212650' => 'hma', 'Hma1.2p1_2156F.1_g315420' => 'hma', 'Hma1.2p1_2686F.1_g326940' => 'hma', 'HPP92_006428' => 'vpl', 'HPP92_012069' => 'vpl', 'HPP92_014129' => 'vpl', 'HPP92_014133' => 'vpl', 'HPP92_017315' => 'vpl', 'HPP92_026445' => 'vpl', 'HPP92_026446' => 'vpl', 'Hund00774' => 'sun', 'Hund07682' => 'sun', 'Hund21413' => 'sun', 'Hund23462' => 'sun', 'Hund23463' => 'sun', 'Lalb_Chr03g0027911' => 'lal', 'Lalb_Chr13g0304271' => 'lal', 'Lalb_Chr19g0137471' => 'lal', 'Lalb_Chr22g0350651' => 'lal', 'Lalb_Chr24g0395151' => 'lal', 'Lj1A1231T40' => 'lonja', 'Lj1A221T48' => 'lonja', 'Lj1C924T12' => 'lonja', 'Lj2C993G6' => 'lonja', 'Lj3g0005790' => 'lja', 'Lj3g0015432' => 'lja', 'Lj3g0017722' => 'lja', 'Lj3g0018497' => 'lja', 'Lj4g0025071' => 'lja', 'Lsat_1_v5_gn_1_129680' => 'lsa', 'Lsat_1_v5_gn_2_25321' => 'lsa', 'Lsat_1_v5_gn_2_95461' => 'lsa', 'Lsat_1_v5_gn_4_159620' => 'lsa', 'Lsat_1_v5_gn_6_41301' => 'lsa', 'Lsat_1_v5_gn_6_74660' => 'lsa', 'Lsat_1_v5_gn_7_11520' => 'lsa', 'Lsat_1_v5_gn_9_67680' => 'lsa', 'Manes.04G008300' => 'mes', 'Manes.04G008400' => 'mes', 'Manes.04G026500' => 'mes', 'Manes.10G135300' => 'mes', 'Manes.11G157300' => 'mes', 'Manes.12G074000' => 'mes', 'Manes.16G006200' => 'mes', 'Manes.17G026400' => 'mes', 'Mapoly0024s0086' => 'mpo', 'Mapoly0024s0087' => 'mpo', 'Mapoly0071s0057' => 'mpo', 'Mapoly0204s0012' => 'mpo', 'MBI04_g37681_MAGBIO' => 'mbi', 'MBI05_g17779_MAGBIO' => 'mbi', 'MBI12_g31184_MAGBIO' => 'mbi', 'MBI17_g11083_MAGBIO' => 'mbi', 'MBI18_g03883_MAGBIO' => 'mbi', 'MBI18_g28940_MAGBIO' => 'mbi', 'MCO01G690' => 'mco', 'MD03G1109900' => 'mdo', 'MD03G1134800' => 'mdo', 'MD05G1348000' => 'mdo', 'MD10G1322400' => 'mdo', 'MD11G1123300' => 'mdo', 'MD11G1157600' => 'mdo', 'Medtr2g084875' => 'mtr', 'Medtr2g088130' => 'mtr', 'Medtr4g055310' => 'mtr', 'Medtr4g061070' => 'mtr', 'Medtr4g132250' => 'mtr', 'MELO3C004795.2' => 'cme', 'MELO3C004797.2' => 'cme', 'MELO3C007396.2' => 'cme', 'MELO3C019277.2' => 'cme', 'MELO3C021449.2' => 'cme', 'MELO3C025736.2' => 'cme', 'Migut.D02175' => 'egut', 'Migut.H01573' => 'egut', 'Migut.M01327' => 'egut', 'Migut.N02513' => 'egut', 'MSTRG.14638' => 'ama', 'MSTRG.18632' => 'ama', 'MSTRG.7203' => 'ama', 'Nitab4.5_0000533g0140' => 'nta', 'Nitab4.5_0000888g0150' => 'nta', 'Nitab4.5_0001453g0040' => 'nta', 'Nitab4.5_0002827g0090' => 'nta', 'Nitab4.5_0003082g0040' => 'nta', 'Nitab4.5_0007799g0040' => 'nta', 'Nitab4.5_0008983g0010' => 'nta', 'Nitab4.5_0009017g0020' => 'nta', 'Nn1g02132' => 'nnu', 'Nn1g03492' => 'nnu', 'Nn1g03493' => 'nnu', 'Nn1g03494' => 'nnu', 'Nn1g07164' => 'nnu', 'Nn1g07291' => 'nnu', 'Nn2g10655' => 'nnu', 'Nn2g11652' => 'nnu', 'Nn2g14008' => 'nnu', 'Nn3g17476' => 'nnu', 'Nn3g17477' => 'nnu', 'Nn4g22370' => 'nnu', 'Nn4g25255' => 'nnu', 'Nn5g27755' => 'nnu', 'Nn6g34260' => 'nnu', 'Nn6g35041' => 'nnu', 'Oeu005924.1' => 'oeu', 'Oeu008383.1' => 'oeu', 'Oeu014928.1' => 'oeu', 'Oeu019889.1' => 'oeu', 'Oeu022271.1' => 'oeu', 'Oeu025271.1' => 'oeu', 'Oeu036302.1' => 'oeu', 'Oeu044100.1' => 'oeu', 'Os01g0528300' => 'osa', 'Os03g0286200' => 'osa', 'Os04g0406600' => 'osa', 'Os07g0512000' => 'osa', 'Os07g0694600' => 'osa', 'Os08g0411000' => 'osa', 'Os09g0565700' => 'osa', 'Os09g0566050' => 'osa', 'Os10g0523700' => 'osa', 'Peaxi162Scf00002g00514' => 'pax', 'Peaxi162Scf00047g01817' => 'pax', 'Peaxi162Scf00114g00001' => 'pax', 'Peaxi162Scf00147g00613' => 'pax', 'Peaxi162Scf00389g00425' => 'pax', 'PGR042G1139' => 'pgr', 'PGR042G3273' => 'pgr', 'PGR102G2180' => 'pgr', 'PGR119G0234' => 'pgr', 'PGR119G0668' => 'pgr', 'PGSC0003DMG400007122' => 'stu', 'PGSC0003DMG400016478' => 'stu', 'PGSC0003DMG400025374' => 'stu', 'PGSC0003DMG400026536' => 'stu', 'Phvul.003G079600' => 'pvu', 'Phvul.005G115600' => 'pvu', 'Phvul.005G127100' => 'pvu', 'Phvul.006G149500' => 'pvu', 'Phvul.006G149600' => 'pvu', 'Phvul.011G071800' => 'pvu', 'Phvul.011G090400' => 'pvu', 'Potri.004G013400' => 'ptr', 'Potri.004G188100' => 'ptr', 'Potri.008G195500' => 'ptr', 'Potri.009G148800' => 'ptr', 'Potri.011G004700' => 'ptr', 'Pp3c17_22810' => 'ppa', 'Pp3c18_4480' => 'ppa', 'Pp3c19_13030' => 'ppa', 'Pp3c1_33620' => 'ppa', 'Pp3c2_9380' => 'ppa', 'PRCOL_00001023' => 'pco', 'Prupe.3G216300' => 'ppe', 'Prupe.4G019500' => 'ppe', 'Prupe.6G092500' => 'ppe', 'Prupe.6G119200' => 'ppe', 'Psat0s1945g0080' => 'psa', 'Psat0s4167g0040' => 'psa', 'Psat1g185800' => 'psa', 'Psat4g006440' => 'psa', 'Psat4g006480' => 'psa', 'Psat4g168120' => 'psa', 'Psat5g255680' => 'psa', 'Psat5g261760' => 'psa', 'Psat7g222120' => 'psa', 'PSO063G7252' => 'pso', 'PSO170G4778' => 'pso', 'PSO210G2249' => 'pso', 'PSO339G2411' => 'pso', 'PSO339G2457' => 'pso', 'PSO339G2854' => 'pso', 'PSO339G4288' => 'pso', 'PSO339G4615' => 'pso', 'PSO384G2796' => 'pso', 'PSO384G2940' => 'pso', 'PSO384G4227' => 'pso', 'PSO478G1425' => 'pso', 'PSO541G3863' => 'pso', 'PSO675G0507' => 'pso', 'PSO782G0338' => 'pso', 'PSO832G0644' => 'pso', 'QL01p013664' => 'qlo', 'QL01p036598' => 'qlo', 'QL05p072984' => 'qlo', 'QL08p005768' => 'qlo', 'QL08p032743' => 'qlo', 'QL93p0073_0439' => 'qlo', 'QL93p0073_0444' => 'qlo', 'RcHm_v2.0_Chr5g0002851' => 'rch', 'RcHm_v2.0_Chr5g0055201' => 'rch', 'RcHm_v2.0_Chr5g0061191' => 'rch', 'RcHm_v2.0_Chr7g0203231' => 'rch', 'Rhsim01G0208100' => 'rsi', 'Rhsim01G0208200' => 'rsi', 'Rhsim02G0106500' => 'rsi', 'Rhsim03G0107900' => 'rsi', 'Rhsim06G0163400' => 'rsi', 'Rhsim13G0105200' => 'rsi', 'Sabra04G0006300' => 'sbr', 'Sabra04G0127000' => 'sbr', 'Sabra08G0148700' => 'sbr', 'Sabra09G0117400' => 'sbr', 'SalBow1G3326' => 'sbo', 'SalBow3G3228' => 'sbo', 'SalBow6G1634' => 'sbo', 'SalBow6G3603' => 'sbo', 'SalBow6G5266' => 'sbo', 'SalBow7G2265' => 'sbo', 'SalBow8G0850' => 'sbo', 'SalBow8G2592' => 'sbo', 'Sc05g0009240' => 'sci', 'Sc12g0002300' => 'sci', 'Sc21g0000100' => 'sci', 'Sc21g0004720' => 'sci', 'Sed0002949' => 'sed', 'Sed0004114' => 'sed', 'Sed0004306' => 'sed', 'Sed0006172' => 'sed', 'Sed0008413' => 'sed', 'Sed0013809' => 'sed', 'Sed0019556' => 'sed', 'SEGI_03570' => 'sgi', 'SEGI_07859' => 'sgi', 'SEGI_15042' => 'sgi', 'SEGI_16263' => 'sgi', 'SEGI_16552' => 'sgi', 'SEGI_24331' => 'sgi', 'SEGI_27316' => 'sgi', 'SEGI_29521' => 'sgi', 'SEGI_41342' => 'sgi', 'SGA_v2.0_scaffold27G11617' => 'sas', 'SGA_v2.0_scaffold316G48428' => 'sas', 'SGA_v2.0_scaffold49G18261' => 'sas', 'SGA_v2.0_scaffold7G03831' => 'sas', 'SGA_v2.0_scaffold93G28359' => 'sas', 'SHI02210' => 'shi', 'SHI06028' => 'shi', 'SHI06321' => 'shi', 'SMO111G0012' => 'smo', 'SMO228G0080' => 'smo', 'SMO356G0756' => 'smo', 'Solyc02g080620.3' => 'sly', 'Solyc06g074530.1' => 'sly', 'Solyc11g066890.1' => 'sly', 'Solyc11g072520.3' => 'sly', 'Sopen02g025330' => 'spe', 'Sopen06g031000' => 'spe', 'Sopen09g008240' => 'spe', 'Sopen09g025210' => 'spe', 'Sopen11g026600' => 'spe', 'Sopen11g030170' => 'spe', 'Sp1g10420' => 'spa', 'Sp3g06570' => 'spa', 'Sp4g10660' => 'spa', 'Sp5g16460' => 'spa', 'Sp6g22710' => 'spa', 'TAR365G0112' => 'tar', 'TAR369G0717' => 'tar', 'TAR374G0976' => 'tar', 'TAR623G1128' => 'tar', 'TAR626G1937' => 'tar', 'TAR627G0123' => 'tar', 'TAR628G0305' => 'tar', 'TAR636G1176' => 'tar', 'TAR636G2442' => 'tar', 'THA.LOC104800556' => 'tha', 'THA.LOC104809501' => 'tha', 'THA.LOC104815126' => 'tha', 'THA.LOC104815732' => 'tha', 'THA.LOC104823528' => 'tha', 'Thecc.02G365600' => 'tca', 'Thecc.06G222300' => 'tca', 'Thecc.09G261800' => 'tca', 'Thecc.09G291400' => 'tca', 'Thhalv10003028m.g' => 'esa', 'Thhalv10007886m.g' => 'esa', 'Thhalv10016085m.g' => 'esa', 'Thhalv10016681m.g' => 'esa', 'Thhalv10020951m.g' => 'esa', 'TPR.G15598' => 'tpr', 'TPR.G29305' => 'tpr', 'TPR.G32395' => 'tpr', 'TPR.G36998' => 'tpr', 'TPR.G4227' => 'tpr', 'TWI18G1433' => 'twi', 'TWI31G0755' => 'twi', 'TWI38G0912' => 'twi', 'TWI75G1097' => 'twi', 'TWI75G1619' => 'twi', 'TWI79G1336' => 'twi', 'unitig_0.g943' => 'ugi', 'unitig_0.g944' => 'ugi', 'unitig_22.g6646' => 'ugi', 'unitig_37.g12681' => 'ugi', 'unitig_8.g3290' => 'ugi', 'vmacro03278' => 'vma', 'vmacro12197' => 'vma', 'vmacro14478' => 'vma', 'vmacro15787' => 'vma', 'vmacro15789' => 'vma', 'vmacro15790' => 'vma', 'vmacro15806' => 'vma', 'vmacro22907' => 'vma', 'vmacro22908' => 'vma', 'vmacro22909' => 'vma', 'vmacro23108' => 'vma', 'VMungo0540G0540' => 'vmu', 'VMungo0540G2468' => 'vmu', 'VMungo1080G0390' => 'vmu', 'VMungo1080G1165' => 'vmu', 'VMungo1127G0170' => 'vmu', 'VMungo1127G2099' => 'vmu', 'VMungo1215G3013' => 'vmu', 'Zm00001eb013110' => 'zma', 'Zm00001eb084260' => 'zma', 'Zm00001eb096110' => 'zma', 'Zm00001eb217510' => 'zma', 'Zm00001eb322550' => 'zma', 'Zm00001eb390770' => 'zma', 'Zm00001eb397170' => 'zma', 'Zm00001eb404610' => 'zma', 'Zm00001eb421790' => 'zma' ), 'gf_id' => 'HOM05D000911', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000911' ), 'data_identifier' => 'HOM05D000911', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000911', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27780' => 'bna', 'A03p35380' => 'bna', 'A04p21160' => 'bna', 'A05p40570' => 'bna', 'A06p26900' => 'bna', 'A08p33230' => 'bna', 'A09p65960' => 'bna', 'A10p18290' => 'bna', 'Aa31LG1G12990' => 'aar', 'Aa31LG1G2980' => 'aar', 'Aa31LG4G14320' => 'aar', 'Aa31LG7G11800' => 'aar', 'Aa31sc36G50' => 'aar', 'Aa31sc36G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3721' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5459' => 'aag', 'Actinidia03028' => 'ach', 'Actinidia03753' => 'ach', 'Actinidia04187' => 'ach', 'Actinidia05509' => 'ach', 'Actinidia24180' => 'ach', 'Actinidia26906' => 'ach', 'Actinidia37097' => 'ach', 'Actinidia38249' => 'ach', 'Ah.01g003470' => 'amhyb', 'Ah.01g004580' => 'amhyb', 'Ah.01g014850' => 'amhyb', 'Ah.01g016830' => 'amhyb', 'Ah.14g088000' => 'amhyb', 'AL1G22980' => 'aly', 'AL3G18990' => 'aly', 'AL4G22440' => 'aly', 'AL4G33180' => 'aly', 'AL5G22920' => 'aly', 'AL6G33660' => 'aly', 'AL8G20720' => 'aly', 'Aqoxy1G00935' => 'aox', 'Aqoxy1G02094' => 'aox', 'Aqoxy2G01239' => 'aox', 'Aqoxy4G01870' => 'aox', 'Aqoxy7G00450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.36ZVTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71EM27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5D6C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH3WRE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3NCM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RIM768' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YB5YRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z36GDV' => 'arhy', 'AT1G08250' => 'ath', 'AT1G11790' => 'ath', 'AT2G27820' => 'ath', 'AT3G07630' => 'ath', 'AT3G44720' => 'ath', 'AT5G22630' => 'ath', 'ATR0693G304' => 'atr', 'ATR0794G109' => 'atr', 'ATR0820G120' => 'atr', 'ATR1159G064' => 'atr', 'Atru.chr10.2239' => 'acertr', 'Atru.chr3.3371' => 'acertr', 'Atru.chr6.3202' => 'acertr', 'AUR62006499' => 'cqu', 'AUR62012718' => 'cqu', 'AUR62021938' => 'cqu', 'AUR62023932' => 'cqu', 'AUR62025034' => 'cqu', 'AUR62025035' => 'cqu', 'AUR62038307' => 'cqu', 'AUR62043466' => 'cqu', 'BcaB02g10748' => 'bca', 'BcaB03g13231' => 'bca', 'BcaB03g14689' => 'bca', 'BcaB05g22716' => 'bca', 'BcaB06g28172' => 'bca', 'BcaB08g36413' => 'bca', 'BcaC01g02186' => 'bca', 'BcaC01g04272' => 'bca', 'BcaC02g08080' => 'bca', 'BcaC02g08227' => 'bca', 'BcaC03g13901' => 'bca', 'BcaC04g19593' => 'bca', 'BcaC04g20874' => 'bca', 'BcaC05g29557' => 'bca', 'BcaC06g35505' => 'bca', 'BcaC07g41954' => 'bca', 'BcaC07g41955' => 'bca', 'BcaC07g41956' => 'bca', 'BcaC07g42519' => 'bca', 'BcaC07g42520' => 'bca', 'BcaC07g42523' => 'bca', 'BcaC07g42524' => 'bca', 'BcaC07g42525' => 'bca', 'BcaC08g47480' => 'bca', 'BcaC08g47481' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00530' => 'bna', 'BolC2t07178H' => 'bol', 'BolC3t16567H' => 'bol', 'BolC4t27234H' => 'bol', 'BolC5t29728H' => 'bol', 'BolC5t34622H' => 'bol', 'BolC6t40321H' => 'bol', 'BolC7t42028H' => 'bol', 'BolC8t49125H' => 'bol', 'BolC8t52538H' => 'bol', 'BolC8t52539H' => 'bol', 'BolC9t56681H' => 'bol', 'BolC9t58266H' => 'bol', 'BolSC21t60294H' => 'bol', 'BraA02t05670Z' => 'bra', 'BraA03t12716Z' => 'bra', 'BraA04t17685Z' => 'bra', 'BraA05t22788Z' => 'bra', 'BraA06t24032Z' => 'bra', 'BraA06t25625Z' => 'bra', 'BraA07t27930Z' => 'bra', 'BraA08t35242Z' => 'bra', 'BraA09t38609Z' => 'bra', 'BraA10t43905Z' => 'bra', 'C02p11060' => 'bna', 'C03p42990' => 'bna', 'C03p67310' => 'bna', 'C04p56990' => 'bna', 'C04p58660' => 'bna', 'C05p09890' => 'bna', 'C05p59680' => 'bna', 'C06p19830' => 'bna', 'C06p53040' => 'bna', 'C07p15230' => 'bna', 'C08p50070' => 'bna', 'C08p50090' => 'bna', 'C09p38330' => 'bna', 'C09p53940' => 'bna', 'CAN.G1014.1' => 'can', 'CAN.G644.30' => 'can', 'CAN.G84.47' => 'can', 'CAN.G919.8' => 'can', 'CANSAT54G0113' => 'cansat', 'CANSAT54G1286' => 'cansat', 'CANSAT64G1020' => 'cansat', 'CARHR008080' => 'chi', 'CARHR008090' => 'chi', 'CARHR012130' => 'chi', 'CARHR038390' => 'chi', 'CARHR082330' => 'chi', 'CARHR120520' => 'chi', 'CARHR151470' => 'chi', 'CARHR190950' => 'chi', 'Carub.0001s0760' => 'cru', 'Carub.0001s1146' => 'cru', 'Carub.0003s0721' => 'cru', 'Carub.0004s0858' => 'cru', 'Carub.0005s1040' => 'cru', 'Carub.0006s2035' => 'cru', 'Carub.0015s0005' => 'cru', 'Ca_01607_v3' => 'car', 'Ca_01677_v3' => 'car', 'Ca_06087_v3' => 'car', 'Ca_19238_v3' => 'car', 'Ca_19373_v3' => 'car', 'Ca_21079_v3' => 'car', 'CBR_g54016' => 'cbr', 'CBR_g54018' => 'cbr', 'CBR_g54020' => 'cbr', 'Cc01_g09780' => 'ccan', 'Cc01_g11680' => 'ccan', 'Cc02_g15610' => 'ccan', 'Cc05_g04350' => 'ccan', 'Cc09_g01580' => 'ccan', 'CDE01G0795' => 'cde', 'CDE02G2024' => 'cde', 'CDE02G2260' => 'cde', 'CDE02G4561' => 'cde', 'CDE05G2733' => 'cde', 'CDE05G3422' => 'cde', 'CDE06G2003' => 'cde', 'CDE08G0576' => 'cde', 'CDE09G0048' => 'cde', 'CDE11G0805' => 'cde', 'Cfa003644' => 'cfa', 'Cfa006290' => 'cfa', 'Cfa010080' => 'cfa', 'Cfa011376' => 'cfa', 'Cfa011576' => 'cfa', 'Cfa011577' => 'cfa', 'Cfa014389' => 'cfa', 'Ciclev10006044m.g' => 'ccl', 'Ciclev10006954m.g' => 'ccl', 'Ciclev10015131m.g' => 'ccl', 'Ciclev10015580m.g' => 'ccl', 'Ciclev10028359m.g' => 'ccl', 'Ciclev10028573m.g' => 'ccl', 'CiPaw.03G159300' => 'cil', 'CiPaw.04G115100' => 'cil', 'CiPaw.09G092800' => 'cil', 'CiPaw.10G071800' => 'cil', 'CiPaw.13G105800' => 'cil', 'CiPaw.13G141000' => 'cil', 'CiPaw.14G103400' => 'cil', 'ClCG01G012700' => 'cla', 'ClCG01G012720' => 'cla', 'ClCG01G021920' => 'cla', 'ClCG02G008870' => 'cla', 'ClCG02G020840' => 'cla', 'ClCG02G021930' => 'cla', 'COL.COLO4_19302' => 'col', 'COL.COLO4_25262' => 'col', 'COL.COLO4_31788' => 'col', 'Cpa.g.c34684' => 'cpa', 'Cpa.g.c36520.1' => 'cpa', 'Cpa.g.c45626' => 'cpa', 'Cpa.g.sc121.17' => 'cpa', 'Cpa.g.sc13.22' => 'cpa', 'Cpa.g.sc87.88' => 'cpa', 'Cre06.g261800' => 'cre', 'CsaV3_1G014500' => 'csa', 'CsaV3_1G014510' => 'csa', 'CsaV3_2G034880' => 'csa', 'CsaV3_6G014760' => 'csa', 'CsaV3_6G021500' => 'csa', 'CsaV3_6G048980' => 'csa', 'CSS0002511' => 'camsi', 'CSS0007556' => 'camsi', 'CSS0008532' => 'camsi', 'CSS0009709' => 'camsi', 'CSS0010486' => 'camsi', 'CSS0016768' => 'camsi', 'CSS0023512' => 'camsi', 'CSS0025341' => 'camsi', 'CSS0027999' => 'camsi', 'CSS0028944' => 'camsi', 'CSS0032292' => 'camsi', 'CSS0032464' => 'camsi', 'CSS0037153' => 'camsi', 'CSS0039256' => 'camsi', 'CSS0048392' => 'camsi', 'CSS0050458' => 'camsi', 'DCAR_004224' => 'dca', 'DCAR_006147' => 'dca', 'DCAR_006465' => 'dca', 'DCAR_008159' => 'dca', 'DCAR_012164' => 'dca', 'DCAR_019764' => 'dca', 'Dinv05418' => 'din', 'Dinv10839' => 'din', 'Dinv12521' => 'din', 'Dinv13900' => 'din', 'Dinv29426' => 'din', 'Duzib150G0263' => 'dzi', 'Duzib168G1178' => 'dzi', 'Duzib168G1924' => 'dzi', 'Duzib170G0299' => 'dzi', 'Duzib170G0813' => 'dzi', 'Duzib235G1128' => 'dzi', 'Duzib248G1060' => 'dzi', 'ECA232G1910' => 'eca', 'ECA233G4621' => 'eca', 'ECA238G1216' => 'eca', 'ECA238G1784' => 'eca', 'ECA248G1242' => 'eca', 'EL10Ac8g20071' => 'bvu', 'EL10Ac9g21086' => 'bvu', 'EL10Ac9g22407' => 'bvu', 'EL10Ac9g22412' => 'bvu', 'Eucgr.A01119' => 'egr', 'Eucgr.E04043' => 'egr', 'Eucgr.J00428' => 'egr', 'Eucgr.J00958' => 'egr', 'FAN11G3091' => 'fan', 'FAN11G3651' => 'fan', 'FAN16G2566' => 'fan', 'FAN21G3155' => 'fan', 'FAN21G3400' => 'fan', 'FAN21G3543' => 'fan', 'FAN25G0234' => 'fan', 'FAN25G1422' => 'fan', 'FAN25G3392' => 'fan', 'FvH4_3g01940' => 'fve', 'FvH4_3g29870' => 'fve', 'FvH4_3g33680' => 'fve', 'Glyma.09G004200' => 'gma', 'Glyma.11G151288' => 'gma', 'Glyma.11G189100' => 'gma', 'Glyma.12G072500' => 'gma', 'Glyma.12G085500' => 'gma', 'Glyma.12G181800' => 'gma', 'Glyma.12G193000' => 'gma', 'Glyma.13G309300' => 'gma', 'Glyma.13G319000' => 'gma', 'Glyma.17G012600' => 'gma', 'Gohir.A06G148600' => 'ghi', 'Gohir.A07G115800' => 'ghi', 'Gohir.A08G003600' => 'ghi', 'Gohir.A09G093300' => 'ghi', 'Gohir.A09G105400' => 'ghi', 'Gohir.A09G105500' => 'ghi', 'Gohir.D06G154600' => 'ghi', 'Gohir.D07G120200' => 'ghi', 'Gohir.D08G013900' => 'ghi', 'Gohir.D09G093100' => 'ghi', 'Gohir.D09G102200' => 'ghi', 'Gohir.D09G102300' => 'ghi', 'Gorai.001G129400' => 'gra', 'Gorai.004G008200' => 'gra', 'Gorai.006G109800' => 'gra', 'Gorai.006G119500' => 'gra', 'Gorai.006G121300' => 'gra', 'Gorai.010G180700' => 'gra', 'GSVIVG01012716001' => 'vvi', 'GSVIVG01025118001' => 'vvi', 'GSVIVG01030439001' => 'vvi', 'GSVIVG01031397001' => 'vvi', 'HanXRQChr01g0004201' => 'han', 'HanXRQChr02g0054941' => 'han', 'HanXRQChr05g0141811' => 'han', 'HanXRQChr07g0197751' => 'han', 'HanXRQChr11g0346691' => 'han', 'HanXRQChr13g0396971' => 'han', 'HanXRQChr14g0432951' => 'han', 'HanXRQChr14g0452001' => 'han', 'HanXRQChr15g0496681' => 'han', 'HanXRQChr17g0557491' => 'han', 'HanXRQChr17g0557501' => 'han', 'Haze_06809' => 'cav', 'Haze_12852' => 'cav', 'Haze_15850' => 'cav', 'Haze_23446' => 'cav', 'Haze_23942' => 'cav', 'Haze_23943' => 'cav', 'Hma1.2p1_0091F.1_g046450' => 'hma', 'Hma1.2p1_0128F.1_g059910' => 'hma', 'Hma1.2p1_0249F.1_g102260' => 'hma', 'Hma1.2p1_0453F.1_g156190' => 'hma', 'Hma1.2p1_0695F.1_g204380' => 'hma', 'Hma1.2p1_0749F.1_g212650' => 'hma', 'Hma1.2p1_2156F.1_g315420' => 'hma', 'Hma1.2p1_2686F.1_g326940' => 'hma', 'HPP92_006428' => 'vpl', 'HPP92_012069' => 'vpl', 'HPP92_014129' => 'vpl', 'HPP92_014133' => 'vpl', 'HPP92_017315' => 'vpl', 'HPP92_026445' => 'vpl', 'HPP92_026446' => 'vpl', 'Hund00774' => 'sun', 'Hund07682' => 'sun', 'Hund21413' => 'sun', 'Hund23462' => 'sun', 'Hund23463' => 'sun', 'Lalb_Chr03g0027911' => 'lal', 'Lalb_Chr13g0304271' => 'lal', 'Lalb_Chr19g0137471' => 'lal', 'Lalb_Chr22g0350651' => 'lal', 'Lalb_Chr24g0395151' => 'lal', 'Lj1A1231T40' => 'lonja', 'Lj1A221T48' => 'lonja', 'Lj1C924T12' => 'lonja', 'Lj2C993G6' => 'lonja', 'Lj3g0005790' => 'lja', 'Lj3g0015432' => 'lja', 'Lj3g0017722' => 'lja', 'Lj3g0018497' => 'lja', 'Lj4g0025071' => 'lja', 'Lsat_1_v5_gn_1_129680' => 'lsa', 'Lsat_1_v5_gn_2_25321' => 'lsa', 'Lsat_1_v5_gn_2_95461' => 'lsa', 'Lsat_1_v5_gn_4_159620' => 'lsa', 'Lsat_1_v5_gn_6_41301' => 'lsa', 'Lsat_1_v5_gn_6_74660' => 'lsa', 'Lsat_1_v5_gn_7_11520' => 'lsa', 'Lsat_1_v5_gn_9_67680' => 'lsa', 'Manes.04G008300' => 'mes', 'Manes.04G008400' => 'mes', 'Manes.04G026500' => 'mes', 'Manes.10G135300' => 'mes', 'Manes.11G157300' => 'mes', 'Manes.12G074000' => 'mes', 'Manes.16G006200' => 'mes', 'Manes.17G026400' => 'mes', 'Mapoly0024s0086' => 'mpo', 'Mapoly0024s0087' => 'mpo', 'Mapoly0071s0057' => 'mpo', 'Mapoly0204s0012' => 'mpo', 'MBI04_g37681_MAGBIO' => 'mbi', 'MBI05_g17779_MAGBIO' => 'mbi', 'MBI12_g31184_MAGBIO' => 'mbi', 'MBI17_g11083_MAGBIO' => 'mbi', 'MBI18_g03883_MAGBIO' => 'mbi', 'MBI18_g28940_MAGBIO' => 'mbi', 'MCO01G690' => 'mco', 'MD03G1109900' => 'mdo', 'MD03G1134800' => 'mdo', 'MD05G1348000' => 'mdo', 'MD10G1322400' => 'mdo', 'MD11G1123300' => 'mdo', 'MD11G1157600' => 'mdo', 'Medtr2g084875' => 'mtr', 'Medtr2g088130' => 'mtr', 'Medtr4g055310' => 'mtr', 'Medtr4g061070' => 'mtr', 'Medtr4g132250' => 'mtr', 'MELO3C004795.2' => 'cme', 'MELO3C004797.2' => 'cme', 'MELO3C007396.2' => 'cme', 'MELO3C019277.2' => 'cme', 'MELO3C021449.2' => 'cme', 'MELO3C025736.2' => 'cme', 'Migut.D02175' => 'egut', 'Migut.H01573' => 'egut', 'Migut.M01327' => 'egut', 'Migut.N02513' => 'egut', 'MSTRG.14638' => 'ama', 'MSTRG.18632' => 'ama', 'MSTRG.7203' => 'ama', 'Nitab4.5_0000533g0140' => 'nta', 'Nitab4.5_0000888g0150' => 'nta', 'Nitab4.5_0001453g0040' => 'nta', 'Nitab4.5_0002827g0090' => 'nta', 'Nitab4.5_0003082g0040' => 'nta', 'Nitab4.5_0007799g0040' => 'nta', 'Nitab4.5_0008983g0010' => 'nta', 'Nitab4.5_0009017g0020' => 'nta', 'Nn1g02132' => 'nnu', 'Nn1g03492' => 'nnu', 'Nn1g03493' => 'nnu', 'Nn1g03494' => 'nnu', 'Nn1g07164' => 'nnu', 'Nn1g07291' => 'nnu', 'Nn2g10655' => 'nnu', 'Nn2g11652' => 'nnu', 'Nn2g14008' => 'nnu', 'Nn3g17476' => 'nnu', 'Nn3g17477' => 'nnu', 'Nn4g22370' => 'nnu', 'Nn4g25255' => 'nnu', 'Nn5g27755' => 'nnu', 'Nn6g34260' => 'nnu', 'Nn6g35041' => 'nnu', 'Oeu005924.1' => 'oeu', 'Oeu008383.1' => 'oeu', 'Oeu014928.1' => 'oeu', 'Oeu019889.1' => 'oeu', 'Oeu022271.1' => 'oeu', 'Oeu025271.1' => 'oeu', 'Oeu036302.1' => 'oeu', 'Oeu044100.1' => 'oeu', 'Os01g0528300' => 'osa', 'Os03g0286200' => 'osa', 'Os04g0406600' => 'osa', 'Os07g0512000' => 'osa', 'Os07g0694600' => 'osa', 'Os08g0411000' => 'osa', 'Os09g0565700' => 'osa', 'Os09g0566050' => 'osa', 'Os10g0523700' => 'osa', 'Peaxi162Scf00002g00514' => 'pax', 'Peaxi162Scf00047g01817' => 'pax', 'Peaxi162Scf00114g00001' => 'pax', 'Peaxi162Scf00147g00613' => 'pax', 'Peaxi162Scf00389g00425' => 'pax', 'PGR042G1139' => 'pgr', 'PGR042G3273' => 'pgr', 'PGR102G2180' => 'pgr', 'PGR119G0234' => 'pgr', 'PGR119G0668' => 'pgr', 'PGSC0003DMG400007122' => 'stu', 'PGSC0003DMG400016478' => 'stu', 'PGSC0003DMG400025374' => 'stu', 'PGSC0003DMG400026536' => 'stu', 'Phvul.003G079600' => 'pvu', 'Phvul.005G115600' => 'pvu', 'Phvul.005G127100' => 'pvu', 'Phvul.006G149500' => 'pvu', 'Phvul.006G149600' => 'pvu', 'Phvul.011G071800' => 'pvu', 'Phvul.011G090400' => 'pvu', 'Potri.004G013400' => 'ptr', 'Potri.004G188100' => 'ptr', 'Potri.008G195500' => 'ptr', 'Potri.009G148800' => 'ptr', 'Potri.011G004700' => 'ptr', 'Pp3c17_22810' => 'ppa', 'Pp3c18_4480' => 'ppa', 'Pp3c19_13030' => 'ppa', 'Pp3c1_33620' => 'ppa', 'Pp3c2_9380' => 'ppa', 'PRCOL_00001023' => 'pco', 'Prupe.3G216300' => 'ppe', 'Prupe.4G019500' => 'ppe', 'Prupe.6G092500' => 'ppe', 'Prupe.6G119200' => 'ppe', 'Psat0s1945g0080' => 'psa', 'Psat0s4167g0040' => 'psa', 'Psat1g185800' => 'psa', 'Psat4g006440' => 'psa', 'Psat4g006480' => 'psa', 'Psat4g168120' => 'psa', 'Psat5g255680' => 'psa', 'Psat5g261760' => 'psa', 'Psat7g222120' => 'psa', 'PSO063G7252' => 'pso', 'PSO170G4778' => 'pso', 'PSO210G2249' => 'pso', 'PSO339G2411' => 'pso', 'PSO339G2457' => 'pso', 'PSO339G2854' => 'pso', 'PSO339G4288' => 'pso', 'PSO339G4615' => 'pso', 'PSO384G2796' => 'pso', 'PSO384G2940' => 'pso', 'PSO384G4227' => 'pso', 'PSO478G1425' => 'pso', 'PSO541G3863' => 'pso', 'PSO675G0507' => 'pso', 'PSO782G0338' => 'pso', 'PSO832G0644' => 'pso', 'QL01p013664' => 'qlo', 'QL01p036598' => 'qlo', 'QL05p072984' => 'qlo', 'QL08p005768' => 'qlo', 'QL08p032743' => 'qlo', 'QL93p0073_0439' => 'qlo', 'QL93p0073_0444' => 'qlo', 'RcHm_v2.0_Chr5g0002851' => 'rch', 'RcHm_v2.0_Chr5g0055201' => 'rch', 'RcHm_v2.0_Chr5g0061191' => 'rch', 'RcHm_v2.0_Chr7g0203231' => 'rch', 'Rhsim01G0208100' => 'rsi', 'Rhsim01G0208200' => 'rsi', 'Rhsim02G0106500' => 'rsi', 'Rhsim03G0107900' => 'rsi', 'Rhsim06G0163400' => 'rsi', 'Rhsim13G0105200' => 'rsi', 'Sabra04G0006300' => 'sbr', 'Sabra04G0127000' => 'sbr', 'Sabra08G0148700' => 'sbr', 'Sabra09G0117400' => 'sbr', 'SalBow1G3326' => 'sbo', 'SalBow3G3228' => 'sbo', 'SalBow6G1634' => 'sbo', 'SalBow6G3603' => 'sbo', 'SalBow6G5266' => 'sbo', 'SalBow7G2265' => 'sbo', 'SalBow8G0850' => 'sbo', 'SalBow8G2592' => 'sbo', 'Sc05g0009240' => 'sci', 'Sc12g0002300' => 'sci', 'Sc21g0000100' => 'sci', 'Sc21g0004720' => 'sci', 'Sed0002949' => 'sed', 'Sed0004114' => 'sed', 'Sed0004306' => 'sed', 'Sed0006172' => 'sed', 'Sed0008413' => 'sed', 'Sed0013809' => 'sed', 'Sed0019556' => 'sed', 'SEGI_03570' => 'sgi', 'SEGI_07859' => 'sgi', 'SEGI_15042' => 'sgi', 'SEGI_16263' => 'sgi', 'SEGI_16552' => 'sgi', 'SEGI_24331' => 'sgi', 'SEGI_27316' => 'sgi', 'SEGI_29521' => 'sgi', 'SEGI_41342' => 'sgi', 'SGA_v2.0_scaffold27G11617' => 'sas', 'SGA_v2.0_scaffold316G48428' => 'sas', 'SGA_v2.0_scaffold49G18261' => 'sas', 'SGA_v2.0_scaffold7G03831' => 'sas', 'SGA_v2.0_scaffold93G28359' => 'sas', 'SHI02210' => 'shi', 'SHI06028' => 'shi', 'SHI06321' => 'shi', 'SMO111G0012' => 'smo', 'SMO228G0080' => 'smo', 'SMO356G0756' => 'smo', 'Solyc02g080620.3' => 'sly', 'Solyc06g074530.1' => 'sly', 'Solyc11g066890.1' => 'sly', 'Solyc11g072520.3' => 'sly', 'Sopen02g025330' => 'spe', 'Sopen06g031000' => 'spe', 'Sopen09g008240' => 'spe', 'Sopen09g025210' => 'spe', 'Sopen11g026600' => 'spe', 'Sopen11g030170' => 'spe', 'Sp1g10420' => 'spa', 'Sp3g06570' => 'spa', 'Sp4g10660' => 'spa', 'Sp5g16460' => 'spa', 'Sp6g22710' => 'spa', 'TAR365G0112' => 'tar', 'TAR369G0717' => 'tar', 'TAR374G0976' => 'tar', 'TAR623G1128' => 'tar', 'TAR626G1937' => 'tar', 'TAR627G0123' => 'tar', 'TAR628G0305' => 'tar', 'TAR636G1176' => 'tar', 'TAR636G2442' => 'tar', 'THA.LOC104800556' => 'tha', 'THA.LOC104809501' => 'tha', 'THA.LOC104815126' => 'tha', 'THA.LOC104815732' => 'tha', 'THA.LOC104823528' => 'tha', 'Thecc.02G365600' => 'tca', 'Thecc.06G222300' => 'tca', 'Thecc.09G261800' => 'tca', 'Thecc.09G291400' => 'tca', 'Thhalv10003028m.g' => 'esa', 'Thhalv10007886m.g' => 'esa', 'Thhalv10016085m.g' => 'esa', 'Thhalv10016681m.g' => 'esa', 'Thhalv10020951m.g' => 'esa', 'TPR.G15598' => 'tpr', 'TPR.G29305' => 'tpr', 'TPR.G32395' => 'tpr', 'TPR.G36998' => 'tpr', 'TPR.G4227' => 'tpr', 'TWI18G1433' => 'twi', 'TWI31G0755' => 'twi', 'TWI38G0912' => 'twi', 'TWI75G1097' => 'twi', 'TWI75G1619' => 'twi', 'TWI79G1336' => 'twi', 'unitig_0.g943' => 'ugi', 'unitig_0.g944' => 'ugi', 'unitig_22.g6646' => 'ugi', 'unitig_37.g12681' => 'ugi', 'unitig_8.g3290' => 'ugi', 'vmacro03278' => 'vma', 'vmacro12197' => 'vma', 'vmacro14478' => 'vma', 'vmacro15787' => 'vma', 'vmacro15789' => 'vma', 'vmacro15790' => 'vma', 'vmacro15806' => 'vma', 'vmacro22907' => 'vma', 'vmacro22908' => 'vma', 'vmacro22909' => 'vma', 'vmacro23108' => 'vma', 'VMungo0540G0540' => 'vmu', 'VMungo0540G2468' => 'vmu', 'VMungo1080G0390' => 'vmu', 'VMungo1080G1165' => 'vmu', 'VMungo1127G0170' => 'vmu', 'VMungo1127G2099' => 'vmu', 'VMungo1215G3013' => 'vmu', 'Zm00001eb013110' => 'zma', 'Zm00001eb084260' => 'zma', 'Zm00001eb096110' => 'zma', 'Zm00001eb217510' => 'zma', 'Zm00001eb322550' => 'zma', 'Zm00001eb390770' => 'zma', 'Zm00001eb397170' => 'zma', 'Zm00001eb404610' => 'zma', 'Zm00001eb421790' => 'zma' ) $gf_id = 'HOM05D000911' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000911' ) $data_identifier = 'HOM05D000911' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 16, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 5, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 6, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 8, 'nnu' => (int) 16, 'oeu' => (int) 8, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 5, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 16, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421790' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000911', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27780' => 'bna', 'A03p35380' => 'bna', 'A04p21160' => 'bna', 'A05p40570' => 'bna', 'A06p26900' => 'bna', 'A08p33230' => 'bna', 'A09p65960' => 'bna', 'A10p18290' => 'bna', 'Aa31LG1G12990' => 'aar', 'Aa31LG1G2980' => 'aar', 'Aa31LG4G14320' => 'aar', 'Aa31LG7G11800' => 'aar', 'Aa31sc36G50' => 'aar', 'Aa31sc36G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3721' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5459' => 'aag', 'Actinidia03028' => 'ach', 'Actinidia03753' => 'ach', 'Actinidia04187' => 'ach', 'Actinidia05509' => 'ach', 'Actinidia24180' => 'ach', 'Actinidia26906' => 'ach', 'Actinidia37097' => 'ach', 'Actinidia38249' => 'ach', 'Ah.01g003470' => 'amhyb', 'Ah.01g004580' => 'amhyb', 'Ah.01g014850' => 'amhyb', 'Ah.01g016830' => 'amhyb', 'Ah.14g088000' => 'amhyb', 'AL1G22980' => 'aly', 'AL3G18990' => 'aly', 'AL4G22440' => 'aly', 'AL4G33180' => 'aly', 'AL5G22920' => 'aly', 'AL6G33660' => 'aly', 'AL8G20720' => 'aly', 'Aqoxy1G00935' => 'aox', 'Aqoxy1G02094' => 'aox', 'Aqoxy2G01239' => 'aox', 'Aqoxy4G01870' => 'aox', 'Aqoxy7G00450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.36ZVTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71EM27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5D6C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH3WRE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3NCM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RIM768' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YB5YRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z36GDV' => 'arhy', 'AT1G08250' => 'ath', 'AT1G11790' => 'ath', 'AT2G27820' => 'ath', 'AT3G07630' => 'ath', 'AT3G44720' => 'ath', 'AT5G22630' => 'ath', 'ATR0693G304' => 'atr', 'ATR0794G109' => 'atr', 'ATR0820G120' => 'atr', 'ATR1159G064' => 'atr', 'Atru.chr10.2239' => 'acertr', 'Atru.chr3.3371' => 'acertr', 'Atru.chr6.3202' => 'acertr', 'AUR62006499' => 'cqu', 'AUR62012718' => 'cqu', 'AUR62021938' => 'cqu', 'AUR62023932' => 'cqu', 'AUR62025034' => 'cqu', 'AUR62025035' => 'cqu', 'AUR62038307' => 'cqu', 'AUR62043466' => 'cqu', 'BcaB02g10748' => 'bca', 'BcaB03g13231' => 'bca', 'BcaB03g14689' => 'bca', 'BcaB05g22716' => 'bca', 'BcaB06g28172' => 'bca', 'BcaB08g36413' => 'bca', 'BcaC01g02186' => 'bca', 'BcaC01g04272' => 'bca', 'BcaC02g08080' => 'bca', 'BcaC02g08227' => 'bca', 'BcaC03g13901' => 'bca', 'BcaC04g19593' => 'bca', 'BcaC04g20874' => 'bca', 'BcaC05g29557' => 'bca', 'BcaC06g35505' => 'bca', 'BcaC07g41954' => 'bca', 'BcaC07g41955' => 'bca', 'BcaC07g41956' => 'bca', 'BcaC07g42519' => 'bca', 'BcaC07g42520' => 'bca', 'BcaC07g42523' => 'bca', 'BcaC07g42524' => 'bca', 'BcaC07g42525' => 'bca', 'BcaC08g47480' => 'bca', 'BcaC08g47481' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00530' => 'bna', 'BolC2t07178H' => 'bol', 'BolC3t16567H' => 'bol', 'BolC4t27234H' => 'bol', 'BolC5t29728H' => 'bol', 'BolC5t34622H' => 'bol', 'BolC6t40321H' => 'bol', 'BolC7t42028H' => 'bol', 'BolC8t49125H' => 'bol', 'BolC8t52538H' => 'bol', 'BolC8t52539H' => 'bol', 'BolC9t56681H' => 'bol', 'BolC9t58266H' => 'bol', 'BolSC21t60294H' => 'bol', 'BraA02t05670Z' => 'bra', 'BraA03t12716Z' => 'bra', 'BraA04t17685Z' => 'bra', 'BraA05t22788Z' => 'bra', 'BraA06t24032Z' => 'bra', 'BraA06t25625Z' => 'bra', 'BraA07t27930Z' => 'bra', 'BraA08t35242Z' => 'bra', 'BraA09t38609Z' => 'bra', 'BraA10t43905Z' => 'bra', 'C02p11060' => 'bna', 'C03p42990' => 'bna', 'C03p67310' => 'bna', 'C04p56990' => 'bna', 'C04p58660' => 'bna', 'C05p09890' => 'bna', 'C05p59680' => 'bna', 'C06p19830' => 'bna', 'C06p53040' => 'bna', 'C07p15230' => 'bna', 'C08p50070' => 'bna', 'C08p50090' => 'bna', 'C09p38330' => 'bna', 'C09p53940' => 'bna', 'CAN.G1014.1' => 'can', 'CAN.G644.30' => 'can', 'CAN.G84.47' => 'can', 'CAN.G919.8' => 'can', 'CANSAT54G0113' => 'cansat', 'CANSAT54G1286' => 'cansat', 'CANSAT64G1020' => 'cansat', 'CARHR008080' => 'chi', 'CARHR008090' => 'chi', 'CARHR012130' => 'chi', 'CARHR038390' => 'chi', 'CARHR082330' => 'chi', 'CARHR120520' => 'chi', 'CARHR151470' => 'chi', 'CARHR190950' => 'chi', 'Carub.0001s0760' => 'cru', 'Carub.0001s1146' => 'cru', 'Carub.0003s0721' => 'cru', 'Carub.0004s0858' => 'cru', 'Carub.0005s1040' => 'cru', 'Carub.0006s2035' => 'cru', 'Carub.0015s0005' => 'cru', 'Ca_01607_v3' => 'car', 'Ca_01677_v3' => 'car', 'Ca_06087_v3' => 'car', 'Ca_19238_v3' => 'car', 'Ca_19373_v3' => 'car', 'Ca_21079_v3' => 'car', 'CBR_g54016' => 'cbr', 'CBR_g54018' => 'cbr', 'CBR_g54020' => 'cbr', 'Cc01_g09780' => 'ccan', 'Cc01_g11680' => 'ccan', 'Cc02_g15610' => 'ccan', 'Cc05_g04350' => 'ccan', 'Cc09_g01580' => 'ccan', 'CDE01G0795' => 'cde', 'CDE02G2024' => 'cde', 'CDE02G2260' => 'cde', 'CDE02G4561' => 'cde', 'CDE05G2733' => 'cde', 'CDE05G3422' => 'cde', 'CDE06G2003' => 'cde', 'CDE08G0576' => 'cde', 'CDE09G0048' => 'cde', 'CDE11G0805' => 'cde', 'Cfa003644' => 'cfa', 'Cfa006290' => 'cfa', 'Cfa010080' => 'cfa', 'Cfa011376' => 'cfa', 'Cfa011576' => 'cfa', 'Cfa011577' => 'cfa', 'Cfa014389' => 'cfa', 'Ciclev10006044m.g' => 'ccl', 'Ciclev10006954m.g' => 'ccl', 'Ciclev10015131m.g' => 'ccl', 'Ciclev10015580m.g' => 'ccl', 'Ciclev10028359m.g' => 'ccl', 'Ciclev10028573m.g' => 'ccl', 'CiPaw.03G159300' => 'cil', 'CiPaw.04G115100' => 'cil', 'CiPaw.09G092800' => 'cil', 'CiPaw.10G071800' => 'cil', 'CiPaw.13G105800' => 'cil', 'CiPaw.13G141000' => 'cil', 'CiPaw.14G103400' => 'cil', 'ClCG01G012700' => 'cla', 'ClCG01G012720' => 'cla', 'ClCG01G021920' => 'cla', 'ClCG02G008870' => 'cla', 'ClCG02G020840' => 'cla', 'ClCG02G021930' => 'cla', 'COL.COLO4_19302' => 'col', 'COL.COLO4_25262' => 'col', 'COL.COLO4_31788' => 'col', 'Cpa.g.c34684' => 'cpa', 'Cpa.g.c36520.1' => 'cpa', 'Cpa.g.c45626' => 'cpa', 'Cpa.g.sc121.17' => 'cpa', 'Cpa.g.sc13.22' => 'cpa', 'Cpa.g.sc87.88' => 'cpa', 'Cre06.g261800' => 'cre', 'CsaV3_1G014500' => 'csa', 'CsaV3_1G014510' => 'csa', 'CsaV3_2G034880' => 'csa', 'CsaV3_6G014760' => 'csa', 'CsaV3_6G021500' => 'csa', 'CsaV3_6G048980' => 'csa', 'CSS0002511' => 'camsi', 'CSS0007556' => 'camsi', 'CSS0008532' => 'camsi', 'CSS0009709' => 'camsi', 'CSS0010486' => 'camsi', 'CSS0016768' => 'camsi', 'CSS0023512' => 'camsi', 'CSS0025341' => 'camsi', 'CSS0027999' => 'camsi', 'CSS0028944' => 'camsi', 'CSS0032292' => 'camsi', 'CSS0032464' => 'camsi', 'CSS0037153' => 'camsi', 'CSS0039256' => 'camsi', 'CSS0048392' => 'camsi', 'CSS0050458' => 'camsi', 'DCAR_004224' => 'dca', 'DCAR_006147' => 'dca', 'DCAR_006465' => 'dca', 'DCAR_008159' => 'dca', 'DCAR_012164' => 'dca', 'DCAR_019764' => 'dca', 'Dinv05418' => 'din', 'Dinv10839' => 'din', 'Dinv12521' => 'din', 'Dinv13900' => 'din', 'Dinv29426' => 'din', 'Duzib150G0263' => 'dzi', 'Duzib168G1178' => 'dzi', 'Duzib168G1924' => 'dzi', 'Duzib170G0299' => 'dzi', 'Duzib170G0813' => 'dzi', 'Duzib235G1128' => 'dzi', 'Duzib248G1060' => 'dzi', 'ECA232G1910' => 'eca', 'ECA233G4621' => 'eca', 'ECA238G1216' => 'eca', 'ECA238G1784' => 'eca', 'ECA248G1242' => 'eca', 'EL10Ac8g20071' => 'bvu', 'EL10Ac9g21086' => 'bvu', 'EL10Ac9g22407' => 'bvu', 'EL10Ac9g22412' => 'bvu', 'Eucgr.A01119' => 'egr', 'Eucgr.E04043' => 'egr', 'Eucgr.J00428' => 'egr', 'Eucgr.J00958' => 'egr', 'FAN11G3091' => 'fan', 'FAN11G3651' => 'fan', 'FAN16G2566' => 'fan', 'FAN21G3155' => 'fan', 'FAN21G3400' => 'fan', 'FAN21G3543' => 'fan', 'FAN25G0234' => 'fan', 'FAN25G1422' => 'fan', 'FAN25G3392' => 'fan', 'FvH4_3g01940' => 'fve', 'FvH4_3g29870' => 'fve', 'FvH4_3g33680' => 'fve', 'Glyma.09G004200' => 'gma', 'Glyma.11G151288' => 'gma', 'Glyma.11G189100' => 'gma', 'Glyma.12G072500' => 'gma', 'Glyma.12G085500' => 'gma', 'Glyma.12G181800' => 'gma', 'Glyma.12G193000' => 'gma', 'Glyma.13G309300' => 'gma', 'Glyma.13G319000' => 'gma', 'Glyma.17G012600' => 'gma', 'Gohir.A06G148600' => 'ghi', 'Gohir.A07G115800' => 'ghi', 'Gohir.A08G003600' => 'ghi', 'Gohir.A09G093300' => 'ghi', 'Gohir.A09G105400' => 'ghi', 'Gohir.A09G105500' => 'ghi', 'Gohir.D06G154600' => 'ghi', 'Gohir.D07G120200' => 'ghi', 'Gohir.D08G013900' => 'ghi', 'Gohir.D09G093100' => 'ghi', 'Gohir.D09G102200' => 'ghi', 'Gohir.D09G102300' => 'ghi', 'Gorai.001G129400' => 'gra', 'Gorai.004G008200' => 'gra', 'Gorai.006G109800' => 'gra', 'Gorai.006G119500' => 'gra', 'Gorai.006G121300' => 'gra', 'Gorai.010G180700' => 'gra', 'GSVIVG01012716001' => 'vvi', 'GSVIVG01025118001' => 'vvi', 'GSVIVG01030439001' => 'vvi', 'GSVIVG01031397001' => 'vvi', 'HanXRQChr01g0004201' => 'han', 'HanXRQChr02g0054941' => 'han', 'HanXRQChr05g0141811' => 'han', 'HanXRQChr07g0197751' => 'han', 'HanXRQChr11g0346691' => 'han', 'HanXRQChr13g0396971' => 'han', 'HanXRQChr14g0432951' => 'han', 'HanXRQChr14g0452001' => 'han', 'HanXRQChr15g0496681' => 'han', 'HanXRQChr17g0557491' => 'han', 'HanXRQChr17g0557501' => 'han', 'Haze_06809' => 'cav', 'Haze_12852' => 'cav', 'Haze_15850' => 'cav', 'Haze_23446' => 'cav', 'Haze_23942' => 'cav', 'Haze_23943' => 'cav', 'Hma1.2p1_0091F.1_g046450' => 'hma', 'Hma1.2p1_0128F.1_g059910' => 'hma', 'Hma1.2p1_0249F.1_g102260' => 'hma', 'Hma1.2p1_0453F.1_g156190' => 'hma', 'Hma1.2p1_0695F.1_g204380' => 'hma', 'Hma1.2p1_0749F.1_g212650' => 'hma', 'Hma1.2p1_2156F.1_g315420' => 'hma', 'Hma1.2p1_2686F.1_g326940' => 'hma', 'HPP92_006428' => 'vpl', 'HPP92_012069' => 'vpl', 'HPP92_014129' => 'vpl', 'HPP92_014133' => 'vpl', 'HPP92_017315' => 'vpl', 'HPP92_026445' => 'vpl', 'HPP92_026446' => 'vpl', 'Hund00774' => 'sun', 'Hund07682' => 'sun', 'Hund21413' => 'sun', 'Hund23462' => 'sun', 'Hund23463' => 'sun', 'Lalb_Chr03g0027911' => 'lal', 'Lalb_Chr13g0304271' => 'lal', 'Lalb_Chr19g0137471' => 'lal', 'Lalb_Chr22g0350651' => 'lal', 'Lalb_Chr24g0395151' => 'lal', 'Lj1A1231T40' => 'lonja', 'Lj1A221T48' => 'lonja', 'Lj1C924T12' => 'lonja', 'Lj2C993G6' => 'lonja', 'Lj3g0005790' => 'lja', 'Lj3g0015432' => 'lja', 'Lj3g0017722' => 'lja', 'Lj3g0018497' => 'lja', 'Lj4g0025071' => 'lja', 'Lsat_1_v5_gn_1_129680' => 'lsa', 'Lsat_1_v5_gn_2_25321' => 'lsa', 'Lsat_1_v5_gn_2_95461' => 'lsa', 'Lsat_1_v5_gn_4_159620' => 'lsa', 'Lsat_1_v5_gn_6_41301' => 'lsa', 'Lsat_1_v5_gn_6_74660' => 'lsa', 'Lsat_1_v5_gn_7_11520' => 'lsa', 'Lsat_1_v5_gn_9_67680' => 'lsa', 'Manes.04G008300' => 'mes', 'Manes.04G008400' => 'mes', 'Manes.04G026500' => 'mes', 'Manes.10G135300' => 'mes', 'Manes.11G157300' => 'mes', 'Manes.12G074000' => 'mes', 'Manes.16G006200' => 'mes', 'Manes.17G026400' => 'mes', 'Mapoly0024s0086' => 'mpo', 'Mapoly0024s0087' => 'mpo', 'Mapoly0071s0057' => 'mpo', 'Mapoly0204s0012' => 'mpo', 'MBI04_g37681_MAGBIO' => 'mbi', 'MBI05_g17779_MAGBIO' => 'mbi', 'MBI12_g31184_MAGBIO' => 'mbi', 'MBI17_g11083_MAGBIO' => 'mbi', 'MBI18_g03883_MAGBIO' => 'mbi', 'MBI18_g28940_MAGBIO' => 'mbi', 'MCO01G690' => 'mco', 'MD03G1109900' => 'mdo', 'MD03G1134800' => 'mdo', 'MD05G1348000' => 'mdo', 'MD10G1322400' => 'mdo', 'MD11G1123300' => 'mdo', 'MD11G1157600' => 'mdo', 'Medtr2g084875' => 'mtr', 'Medtr2g088130' => 'mtr', 'Medtr4g055310' => 'mtr', 'Medtr4g061070' => 'mtr', 'Medtr4g132250' => 'mtr', 'MELO3C004795.2' => 'cme', 'MELO3C004797.2' => 'cme', 'MELO3C007396.2' => 'cme', 'MELO3C019277.2' => 'cme', 'MELO3C021449.2' => 'cme', 'MELO3C025736.2' => 'cme', 'Migut.D02175' => 'egut', 'Migut.H01573' => 'egut', 'Migut.M01327' => 'egut', 'Migut.N02513' => 'egut', 'MSTRG.14638' => 'ama', 'MSTRG.18632' => 'ama', 'MSTRG.7203' => 'ama', 'Nitab4.5_0000533g0140' => 'nta', 'Nitab4.5_0000888g0150' => 'nta', 'Nitab4.5_0001453g0040' => 'nta', 'Nitab4.5_0002827g0090' => 'nta', 'Nitab4.5_0003082g0040' => 'nta', 'Nitab4.5_0007799g0040' => 'nta', 'Nitab4.5_0008983g0010' => 'nta', 'Nitab4.5_0009017g0020' => 'nta', 'Nn1g02132' => 'nnu', 'Nn1g03492' => 'nnu', 'Nn1g03493' => 'nnu', 'Nn1g03494' => 'nnu', 'Nn1g07164' => 'nnu', 'Nn1g07291' => 'nnu', 'Nn2g10655' => 'nnu', 'Nn2g11652' => 'nnu', 'Nn2g14008' => 'nnu', 'Nn3g17476' => 'nnu', 'Nn3g17477' => 'nnu', 'Nn4g22370' => 'nnu', 'Nn4g25255' => 'nnu', 'Nn5g27755' => 'nnu', 'Nn6g34260' => 'nnu', 'Nn6g35041' => 'nnu', 'Oeu005924.1' => 'oeu', 'Oeu008383.1' => 'oeu', 'Oeu014928.1' => 'oeu', 'Oeu019889.1' => 'oeu', 'Oeu022271.1' => 'oeu', 'Oeu025271.1' => 'oeu', 'Oeu036302.1' => 'oeu', 'Oeu044100.1' => 'oeu', 'Os01g0528300' => 'osa', 'Os03g0286200' => 'osa', 'Os04g0406600' => 'osa', 'Os07g0512000' => 'osa', 'Os07g0694600' => 'osa', 'Os08g0411000' => 'osa', 'Os09g0565700' => 'osa', 'Os09g0566050' => 'osa', 'Os10g0523700' => 'osa', 'Peaxi162Scf00002g00514' => 'pax', 'Peaxi162Scf00047g01817' => 'pax', 'Peaxi162Scf00114g00001' => 'pax', 'Peaxi162Scf00147g00613' => 'pax', 'Peaxi162Scf00389g00425' => 'pax', 'PGR042G1139' => 'pgr', 'PGR042G3273' => 'pgr', 'PGR102G2180' => 'pgr', 'PGR119G0234' => 'pgr', 'PGR119G0668' => 'pgr', 'PGSC0003DMG400007122' => 'stu', 'PGSC0003DMG400016478' => 'stu', 'PGSC0003DMG400025374' => 'stu', 'PGSC0003DMG400026536' => 'stu', 'Phvul.003G079600' => 'pvu', 'Phvul.005G115600' => 'pvu', 'Phvul.005G127100' => 'pvu', 'Phvul.006G149500' => 'pvu', 'Phvul.006G149600' => 'pvu', 'Phvul.011G071800' => 'pvu', 'Phvul.011G090400' => 'pvu', 'Potri.004G013400' => 'ptr', 'Potri.004G188100' => 'ptr', 'Potri.008G195500' => 'ptr', 'Potri.009G148800' => 'ptr', 'Potri.011G004700' => 'ptr', 'Pp3c17_22810' => 'ppa', 'Pp3c18_4480' => 'ppa', 'Pp3c19_13030' => 'ppa', 'Pp3c1_33620' => 'ppa', 'Pp3c2_9380' => 'ppa', 'PRCOL_00001023' => 'pco', 'Prupe.3G216300' => 'ppe', 'Prupe.4G019500' => 'ppe', 'Prupe.6G092500' => 'ppe', 'Prupe.6G119200' => 'ppe', 'Psat0s1945g0080' => 'psa', 'Psat0s4167g0040' => 'psa', 'Psat1g185800' => 'psa', 'Psat4g006440' => 'psa', 'Psat4g006480' => 'psa', 'Psat4g168120' => 'psa', 'Psat5g255680' => 'psa', 'Psat5g261760' => 'psa', 'Psat7g222120' => 'psa', 'PSO063G7252' => 'pso', 'PSO170G4778' => 'pso', 'PSO210G2249' => 'pso', 'PSO339G2411' => 'pso', 'PSO339G2457' => 'pso', 'PSO339G2854' => 'pso', 'PSO339G4288' => 'pso', 'PSO339G4615' => 'pso', 'PSO384G2796' => 'pso', 'PSO384G2940' => 'pso', 'PSO384G4227' => 'pso', 'PSO478G1425' => 'pso', 'PSO541G3863' => 'pso', 'PSO675G0507' => 'pso', 'PSO782G0338' => 'pso', 'PSO832G0644' => 'pso', 'QL01p013664' => 'qlo', 'QL01p036598' => 'qlo', 'QL05p072984' => 'qlo', 'QL08p005768' => 'qlo', 'QL08p032743' => 'qlo', 'QL93p0073_0439' => 'qlo', 'QL93p0073_0444' => 'qlo', 'RcHm_v2.0_Chr5g0002851' => 'rch', 'RcHm_v2.0_Chr5g0055201' => 'rch', 'RcHm_v2.0_Chr5g0061191' => 'rch', 'RcHm_v2.0_Chr7g0203231' => 'rch', 'Rhsim01G0208100' => 'rsi', 'Rhsim01G0208200' => 'rsi', 'Rhsim02G0106500' => 'rsi', 'Rhsim03G0107900' => 'rsi', 'Rhsim06G0163400' => 'rsi', 'Rhsim13G0105200' => 'rsi', 'Sabra04G0006300' => 'sbr', 'Sabra04G0127000' => 'sbr', 'Sabra08G0148700' => 'sbr', 'Sabra09G0117400' => 'sbr', 'SalBow1G3326' => 'sbo', 'SalBow3G3228' => 'sbo', 'SalBow6G1634' => 'sbo', 'SalBow6G3603' => 'sbo', 'SalBow6G5266' => 'sbo', 'SalBow7G2265' => 'sbo', 'SalBow8G0850' => 'sbo', 'SalBow8G2592' => 'sbo', 'Sc05g0009240' => 'sci', 'Sc12g0002300' => 'sci', 'Sc21g0000100' => 'sci', 'Sc21g0004720' => 'sci', 'Sed0002949' => 'sed', 'Sed0004114' => 'sed', 'Sed0004306' => 'sed', 'Sed0006172' => 'sed', 'Sed0008413' => 'sed', 'Sed0013809' => 'sed', 'Sed0019556' => 'sed', 'SEGI_03570' => 'sgi', 'SEGI_07859' => 'sgi', 'SEGI_15042' => 'sgi', 'SEGI_16263' => 'sgi', 'SEGI_16552' => 'sgi', 'SEGI_24331' => 'sgi', 'SEGI_27316' => 'sgi', 'SEGI_29521' => 'sgi', 'SEGI_41342' => 'sgi', 'SGA_v2.0_scaffold27G11617' => 'sas', 'SGA_v2.0_scaffold316G48428' => 'sas', 'SGA_v2.0_scaffold49G18261' => 'sas', 'SGA_v2.0_scaffold7G03831' => 'sas', 'SGA_v2.0_scaffold93G28359' => 'sas', 'SHI02210' => 'shi', 'SHI06028' => 'shi', 'SHI06321' => 'shi', 'SMO111G0012' => 'smo', 'SMO228G0080' => 'smo', 'SMO356G0756' => 'smo', 'Solyc02g080620.3' => 'sly', 'Solyc06g074530.1' => 'sly', 'Solyc11g066890.1' => 'sly', 'Solyc11g072520.3' => 'sly', 'Sopen02g025330' => 'spe', 'Sopen06g031000' => 'spe', 'Sopen09g008240' => 'spe', 'Sopen09g025210' => 'spe', 'Sopen11g026600' => 'spe', 'Sopen11g030170' => 'spe', 'Sp1g10420' => 'spa', 'Sp3g06570' => 'spa', 'Sp4g10660' => 'spa', 'Sp5g16460' => 'spa', 'Sp6g22710' => 'spa', 'TAR365G0112' => 'tar', 'TAR369G0717' => 'tar', 'TAR374G0976' => 'tar', 'TAR623G1128' => 'tar', 'TAR626G1937' => 'tar', 'TAR627G0123' => 'tar', 'TAR628G0305' => 'tar', 'TAR636G1176' => 'tar', 'TAR636G2442' => 'tar', 'THA.LOC104800556' => 'tha', 'THA.LOC104809501' => 'tha', 'THA.LOC104815126' => 'tha', 'THA.LOC104815732' => 'tha', 'THA.LOC104823528' => 'tha', 'Thecc.02G365600' => 'tca', 'Thecc.06G222300' => 'tca', 'Thecc.09G261800' => 'tca', 'Thecc.09G291400' => 'tca', 'Thhalv10003028m.g' => 'esa', 'Thhalv10007886m.g' => 'esa', 'Thhalv10016085m.g' => 'esa', 'Thhalv10016681m.g' => 'esa', 'Thhalv10020951m.g' => 'esa', 'TPR.G15598' => 'tpr', 'TPR.G29305' => 'tpr', 'TPR.G32395' => 'tpr', 'TPR.G36998' => 'tpr', 'TPR.G4227' => 'tpr', 'TWI18G1433' => 'twi', 'TWI31G0755' => 'twi', 'TWI38G0912' => 'twi', 'TWI75G1097' => 'twi', 'TWI75G1619' => 'twi', 'TWI79G1336' => 'twi', 'unitig_0.g943' => 'ugi', 'unitig_0.g944' => 'ugi', 'unitig_22.g6646' => 'ugi', 'unitig_37.g12681' => 'ugi', 'unitig_8.g3290' => 'ugi', 'vmacro03278' => 'vma', 'vmacro12197' => 'vma', 'vmacro14478' => 'vma', 'vmacro15787' => 'vma', 'vmacro15789' => 'vma', 'vmacro15790' => 'vma', 'vmacro15806' => 'vma', 'vmacro22907' => 'vma', 'vmacro22908' => 'vma', 'vmacro22909' => 'vma', 'vmacro23108' => 'vma', 'VMungo0540G0540' => 'vmu', 'VMungo0540G2468' => 'vmu', 'VMungo1080G0390' => 'vmu', 'VMungo1080G1165' => 'vmu', 'VMungo1127G0170' => 'vmu', 'VMungo1127G2099' => 'vmu', 'VMungo1215G3013' => 'vmu', 'Zm00001eb013110' => 'zma', 'Zm00001eb084260' => 'zma', 'Zm00001eb096110' => 'zma', 'Zm00001eb217510' => 'zma', 'Zm00001eb322550' => 'zma', 'Zm00001eb390770' => 'zma', 'Zm00001eb397170' => 'zma', 'Zm00001eb404610' => 'zma', 'Zm00001eb421790' => 'zma' ), 'gf_id' => 'HOM05D000911', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000911' ), 'data_identifier' => 'HOM05D000911', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000911', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27780' => 'bna', 'A03p35380' => 'bna', 'A04p21160' => 'bna', 'A05p40570' => 'bna', 'A06p26900' => 'bna', 'A08p33230' => 'bna', 'A09p65960' => 'bna', 'A10p18290' => 'bna', 'Aa31LG1G12990' => 'aar', 'Aa31LG1G2980' => 'aar', 'Aa31LG4G14320' => 'aar', 'Aa31LG7G11800' => 'aar', 'Aa31sc36G50' => 'aar', 'Aa31sc36G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3721' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5459' => 'aag', 'Actinidia03028' => 'ach', 'Actinidia03753' => 'ach', 'Actinidia04187' => 'ach', 'Actinidia05509' => 'ach', 'Actinidia24180' => 'ach', 'Actinidia26906' => 'ach', 'Actinidia37097' => 'ach', 'Actinidia38249' => 'ach', 'Ah.01g003470' => 'amhyb', 'Ah.01g004580' => 'amhyb', 'Ah.01g014850' => 'amhyb', 'Ah.01g016830' => 'amhyb', 'Ah.14g088000' => 'amhyb', 'AL1G22980' => 'aly', 'AL3G18990' => 'aly', 'AL4G22440' => 'aly', 'AL4G33180' => 'aly', 'AL5G22920' => 'aly', 'AL6G33660' => 'aly', 'AL8G20720' => 'aly', 'Aqoxy1G00935' => 'aox', 'Aqoxy1G02094' => 'aox', 'Aqoxy2G01239' => 'aox', 'Aqoxy4G01870' => 'aox', 'Aqoxy7G00450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.36ZVTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71EM27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5D6C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH3WRE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3NCM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RIM768' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YB5YRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z36GDV' => 'arhy', 'AT1G08250' => 'ath', 'AT1G11790' => 'ath', 'AT2G27820' => 'ath', 'AT3G07630' => 'ath', 'AT3G44720' => 'ath', 'AT5G22630' => 'ath', 'ATR0693G304' => 'atr', 'ATR0794G109' => 'atr', 'ATR0820G120' => 'atr', 'ATR1159G064' => 'atr', 'Atru.chr10.2239' => 'acertr', 'Atru.chr3.3371' => 'acertr', 'Atru.chr6.3202' => 'acertr', 'AUR62006499' => 'cqu', 'AUR62012718' => 'cqu', 'AUR62021938' => 'cqu', 'AUR62023932' => 'cqu', 'AUR62025034' => 'cqu', 'AUR62025035' => 'cqu', 'AUR62038307' => 'cqu', 'AUR62043466' => 'cqu', 'BcaB02g10748' => 'bca', 'BcaB03g13231' => 'bca', 'BcaB03g14689' => 'bca', 'BcaB05g22716' => 'bca', 'BcaB06g28172' => 'bca', 'BcaB08g36413' => 'bca', 'BcaC01g02186' => 'bca', 'BcaC01g04272' => 'bca', 'BcaC02g08080' => 'bca', 'BcaC02g08227' => 'bca', 'BcaC03g13901' => 'bca', 'BcaC04g19593' => 'bca', 'BcaC04g20874' => 'bca', 'BcaC05g29557' => 'bca', 'BcaC06g35505' => 'bca', 'BcaC07g41954' => 'bca', 'BcaC07g41955' => 'bca', 'BcaC07g41956' => 'bca', 'BcaC07g42519' => 'bca', 'BcaC07g42520' => 'bca', 'BcaC07g42523' => 'bca', 'BcaC07g42524' => 'bca', 'BcaC07g42525' => 'bca', 'BcaC08g47480' => 'bca', 'BcaC08g47481' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00530' => 'bna', 'BolC2t07178H' => 'bol', 'BolC3t16567H' => 'bol', 'BolC4t27234H' => 'bol', 'BolC5t29728H' => 'bol', 'BolC5t34622H' => 'bol', 'BolC6t40321H' => 'bol', 'BolC7t42028H' => 'bol', 'BolC8t49125H' => 'bol', 'BolC8t52538H' => 'bol', 'BolC8t52539H' => 'bol', 'BolC9t56681H' => 'bol', 'BolC9t58266H' => 'bol', 'BolSC21t60294H' => 'bol', 'BraA02t05670Z' => 'bra', 'BraA03t12716Z' => 'bra', 'BraA04t17685Z' => 'bra', 'BraA05t22788Z' => 'bra', 'BraA06t24032Z' => 'bra', 'BraA06t25625Z' => 'bra', 'BraA07t27930Z' => 'bra', 'BraA08t35242Z' => 'bra', 'BraA09t38609Z' => 'bra', 'BraA10t43905Z' => 'bra', 'C02p11060' => 'bna', 'C03p42990' => 'bna', 'C03p67310' => 'bna', 'C04p56990' => 'bna', 'C04p58660' => 'bna', 'C05p09890' => 'bna', 'C05p59680' => 'bna', 'C06p19830' => 'bna', 'C06p53040' => 'bna', 'C07p15230' => 'bna', 'C08p50070' => 'bna', 'C08p50090' => 'bna', 'C09p38330' => 'bna', 'C09p53940' => 'bna', 'CAN.G1014.1' => 'can', 'CAN.G644.30' => 'can', 'CAN.G84.47' => 'can', 'CAN.G919.8' => 'can', 'CANSAT54G0113' => 'cansat', 'CANSAT54G1286' => 'cansat', 'CANSAT64G1020' => 'cansat', 'CARHR008080' => 'chi', 'CARHR008090' => 'chi', 'CARHR012130' => 'chi', 'CARHR038390' => 'chi', 'CARHR082330' => 'chi', 'CARHR120520' => 'chi', 'CARHR151470' => 'chi', 'CARHR190950' => 'chi', 'Carub.0001s0760' => 'cru', 'Carub.0001s1146' => 'cru', 'Carub.0003s0721' => 'cru', 'Carub.0004s0858' => 'cru', 'Carub.0005s1040' => 'cru', 'Carub.0006s2035' => 'cru', 'Carub.0015s0005' => 'cru', 'Ca_01607_v3' => 'car', 'Ca_01677_v3' => 'car', 'Ca_06087_v3' => 'car', 'Ca_19238_v3' => 'car', 'Ca_19373_v3' => 'car', 'Ca_21079_v3' => 'car', 'CBR_g54016' => 'cbr', 'CBR_g54018' => 'cbr', 'CBR_g54020' => 'cbr', 'Cc01_g09780' => 'ccan', 'Cc01_g11680' => 'ccan', 'Cc02_g15610' => 'ccan', 'Cc05_g04350' => 'ccan', 'Cc09_g01580' => 'ccan', 'CDE01G0795' => 'cde', 'CDE02G2024' => 'cde', 'CDE02G2260' => 'cde', 'CDE02G4561' => 'cde', 'CDE05G2733' => 'cde', 'CDE05G3422' => 'cde', 'CDE06G2003' => 'cde', 'CDE08G0576' => 'cde', 'CDE09G0048' => 'cde', 'CDE11G0805' => 'cde', 'Cfa003644' => 'cfa', 'Cfa006290' => 'cfa', 'Cfa010080' => 'cfa', 'Cfa011376' => 'cfa', 'Cfa011576' => 'cfa', 'Cfa011577' => 'cfa', 'Cfa014389' => 'cfa', 'Ciclev10006044m.g' => 'ccl', 'Ciclev10006954m.g' => 'ccl', 'Ciclev10015131m.g' => 'ccl', 'Ciclev10015580m.g' => 'ccl', 'Ciclev10028359m.g' => 'ccl', 'Ciclev10028573m.g' => 'ccl', 'CiPaw.03G159300' => 'cil', 'CiPaw.04G115100' => 'cil', 'CiPaw.09G092800' => 'cil', 'CiPaw.10G071800' => 'cil', 'CiPaw.13G105800' => 'cil', 'CiPaw.13G141000' => 'cil', 'CiPaw.14G103400' => 'cil', 'ClCG01G012700' => 'cla', 'ClCG01G012720' => 'cla', 'ClCG01G021920' => 'cla', 'ClCG02G008870' => 'cla', 'ClCG02G020840' => 'cla', 'ClCG02G021930' => 'cla', 'COL.COLO4_19302' => 'col', 'COL.COLO4_25262' => 'col', 'COL.COLO4_31788' => 'col', 'Cpa.g.c34684' => 'cpa', 'Cpa.g.c36520.1' => 'cpa', 'Cpa.g.c45626' => 'cpa', 'Cpa.g.sc121.17' => 'cpa', 'Cpa.g.sc13.22' => 'cpa', 'Cpa.g.sc87.88' => 'cpa', 'Cre06.g261800' => 'cre', 'CsaV3_1G014500' => 'csa', 'CsaV3_1G014510' => 'csa', 'CsaV3_2G034880' => 'csa', 'CsaV3_6G014760' => 'csa', 'CsaV3_6G021500' => 'csa', 'CsaV3_6G048980' => 'csa', 'CSS0002511' => 'camsi', 'CSS0007556' => 'camsi', 'CSS0008532' => 'camsi', 'CSS0009709' => 'camsi', 'CSS0010486' => 'camsi', 'CSS0016768' => 'camsi', 'CSS0023512' => 'camsi', 'CSS0025341' => 'camsi', 'CSS0027999' => 'camsi', 'CSS0028944' => 'camsi', 'CSS0032292' => 'camsi', 'CSS0032464' => 'camsi', 'CSS0037153' => 'camsi', 'CSS0039256' => 'camsi', 'CSS0048392' => 'camsi', 'CSS0050458' => 'camsi', 'DCAR_004224' => 'dca', 'DCAR_006147' => 'dca', 'DCAR_006465' => 'dca', 'DCAR_008159' => 'dca', 'DCAR_012164' => 'dca', 'DCAR_019764' => 'dca', 'Dinv05418' => 'din', 'Dinv10839' => 'din', 'Dinv12521' => 'din', 'Dinv13900' => 'din', 'Dinv29426' => 'din', 'Duzib150G0263' => 'dzi', 'Duzib168G1178' => 'dzi', 'Duzib168G1924' => 'dzi', 'Duzib170G0299' => 'dzi', 'Duzib170G0813' => 'dzi', 'Duzib235G1128' => 'dzi', 'Duzib248G1060' => 'dzi', 'ECA232G1910' => 'eca', 'ECA233G4621' => 'eca', 'ECA238G1216' => 'eca', 'ECA238G1784' => 'eca', 'ECA248G1242' => 'eca', 'EL10Ac8g20071' => 'bvu', 'EL10Ac9g21086' => 'bvu', 'EL10Ac9g22407' => 'bvu', 'EL10Ac9g22412' => 'bvu', 'Eucgr.A01119' => 'egr', 'Eucgr.E04043' => 'egr', 'Eucgr.J00428' => 'egr', 'Eucgr.J00958' => 'egr', 'FAN11G3091' => 'fan', 'FAN11G3651' => 'fan', 'FAN16G2566' => 'fan', 'FAN21G3155' => 'fan', 'FAN21G3400' => 'fan', 'FAN21G3543' => 'fan', 'FAN25G0234' => 'fan', 'FAN25G1422' => 'fan', 'FAN25G3392' => 'fan', 'FvH4_3g01940' => 'fve', 'FvH4_3g29870' => 'fve', 'FvH4_3g33680' => 'fve', 'Glyma.09G004200' => 'gma', 'Glyma.11G151288' => 'gma', 'Glyma.11G189100' => 'gma', 'Glyma.12G072500' => 'gma', 'Glyma.12G085500' => 'gma', 'Glyma.12G181800' => 'gma', 'Glyma.12G193000' => 'gma', 'Glyma.13G309300' => 'gma', 'Glyma.13G319000' => 'gma', 'Glyma.17G012600' => 'gma', 'Gohir.A06G148600' => 'ghi', 'Gohir.A07G115800' => 'ghi', 'Gohir.A08G003600' => 'ghi', 'Gohir.A09G093300' => 'ghi', 'Gohir.A09G105400' => 'ghi', 'Gohir.A09G105500' => 'ghi', 'Gohir.D06G154600' => 'ghi', 'Gohir.D07G120200' => 'ghi', 'Gohir.D08G013900' => 'ghi', 'Gohir.D09G093100' => 'ghi', 'Gohir.D09G102200' => 'ghi', 'Gohir.D09G102300' => 'ghi', 'Gorai.001G129400' => 'gra', 'Gorai.004G008200' => 'gra', 'Gorai.006G109800' => 'gra', 'Gorai.006G119500' => 'gra', 'Gorai.006G121300' => 'gra', 'Gorai.010G180700' => 'gra', 'GSVIVG01012716001' => 'vvi', 'GSVIVG01025118001' => 'vvi', 'GSVIVG01030439001' => 'vvi', 'GSVIVG01031397001' => 'vvi', 'HanXRQChr01g0004201' => 'han', 'HanXRQChr02g0054941' => 'han', 'HanXRQChr05g0141811' => 'han', 'HanXRQChr07g0197751' => 'han', 'HanXRQChr11g0346691' => 'han', 'HanXRQChr13g0396971' => 'han', 'HanXRQChr14g0432951' => 'han', 'HanXRQChr14g0452001' => 'han', 'HanXRQChr15g0496681' => 'han', 'HanXRQChr17g0557491' => 'han', 'HanXRQChr17g0557501' => 'han', 'Haze_06809' => 'cav', 'Haze_12852' => 'cav', 'Haze_15850' => 'cav', 'Haze_23446' => 'cav', 'Haze_23942' => 'cav', 'Haze_23943' => 'cav', 'Hma1.2p1_0091F.1_g046450' => 'hma', 'Hma1.2p1_0128F.1_g059910' => 'hma', 'Hma1.2p1_0249F.1_g102260' => 'hma', 'Hma1.2p1_0453F.1_g156190' => 'hma', 'Hma1.2p1_0695F.1_g204380' => 'hma', 'Hma1.2p1_0749F.1_g212650' => 'hma', 'Hma1.2p1_2156F.1_g315420' => 'hma', 'Hma1.2p1_2686F.1_g326940' => 'hma', 'HPP92_006428' => 'vpl', 'HPP92_012069' => 'vpl', 'HPP92_014129' => 'vpl', 'HPP92_014133' => 'vpl', 'HPP92_017315' => 'vpl', 'HPP92_026445' => 'vpl', 'HPP92_026446' => 'vpl', 'Hund00774' => 'sun', 'Hund07682' => 'sun', 'Hund21413' => 'sun', 'Hund23462' => 'sun', 'Hund23463' => 'sun', 'Lalb_Chr03g0027911' => 'lal', 'Lalb_Chr13g0304271' => 'lal', 'Lalb_Chr19g0137471' => 'lal', 'Lalb_Chr22g0350651' => 'lal', 'Lalb_Chr24g0395151' => 'lal', 'Lj1A1231T40' => 'lonja', 'Lj1A221T48' => 'lonja', 'Lj1C924T12' => 'lonja', 'Lj2C993G6' => 'lonja', 'Lj3g0005790' => 'lja', 'Lj3g0015432' => 'lja', 'Lj3g0017722' => 'lja', 'Lj3g0018497' => 'lja', 'Lj4g0025071' => 'lja', 'Lsat_1_v5_gn_1_129680' => 'lsa', 'Lsat_1_v5_gn_2_25321' => 'lsa', 'Lsat_1_v5_gn_2_95461' => 'lsa', 'Lsat_1_v5_gn_4_159620' => 'lsa', 'Lsat_1_v5_gn_6_41301' => 'lsa', 'Lsat_1_v5_gn_6_74660' => 'lsa', 'Lsat_1_v5_gn_7_11520' => 'lsa', 'Lsat_1_v5_gn_9_67680' => 'lsa', 'Manes.04G008300' => 'mes', 'Manes.04G008400' => 'mes', 'Manes.04G026500' => 'mes', 'Manes.10G135300' => 'mes', 'Manes.11G157300' => 'mes', 'Manes.12G074000' => 'mes', 'Manes.16G006200' => 'mes', 'Manes.17G026400' => 'mes', 'Mapoly0024s0086' => 'mpo', 'Mapoly0024s0087' => 'mpo', 'Mapoly0071s0057' => 'mpo', 'Mapoly0204s0012' => 'mpo', 'MBI04_g37681_MAGBIO' => 'mbi', 'MBI05_g17779_MAGBIO' => 'mbi', 'MBI12_g31184_MAGBIO' => 'mbi', 'MBI17_g11083_MAGBIO' => 'mbi', 'MBI18_g03883_MAGBIO' => 'mbi', 'MBI18_g28940_MAGBIO' => 'mbi', 'MCO01G690' => 'mco', 'MD03G1109900' => 'mdo', 'MD03G1134800' => 'mdo', 'MD05G1348000' => 'mdo', 'MD10G1322400' => 'mdo', 'MD11G1123300' => 'mdo', 'MD11G1157600' => 'mdo', 'Medtr2g084875' => 'mtr', 'Medtr2g088130' => 'mtr', 'Medtr4g055310' => 'mtr', 'Medtr4g061070' => 'mtr', 'Medtr4g132250' => 'mtr', 'MELO3C004795.2' => 'cme', 'MELO3C004797.2' => 'cme', 'MELO3C007396.2' => 'cme', 'MELO3C019277.2' => 'cme', 'MELO3C021449.2' => 'cme', 'MELO3C025736.2' => 'cme', 'Migut.D02175' => 'egut', 'Migut.H01573' => 'egut', 'Migut.M01327' => 'egut', 'Migut.N02513' => 'egut', 'MSTRG.14638' => 'ama', 'MSTRG.18632' => 'ama', 'MSTRG.7203' => 'ama', 'Nitab4.5_0000533g0140' => 'nta', 'Nitab4.5_0000888g0150' => 'nta', 'Nitab4.5_0001453g0040' => 'nta', 'Nitab4.5_0002827g0090' => 'nta', 'Nitab4.5_0003082g0040' => 'nta', 'Nitab4.5_0007799g0040' => 'nta', 'Nitab4.5_0008983g0010' => 'nta', 'Nitab4.5_0009017g0020' => 'nta', 'Nn1g02132' => 'nnu', 'Nn1g03492' => 'nnu', 'Nn1g03493' => 'nnu', 'Nn1g03494' => 'nnu', 'Nn1g07164' => 'nnu', 'Nn1g07291' => 'nnu', 'Nn2g10655' => 'nnu', 'Nn2g11652' => 'nnu', 'Nn2g14008' => 'nnu', 'Nn3g17476' => 'nnu', 'Nn3g17477' => 'nnu', 'Nn4g22370' => 'nnu', 'Nn4g25255' => 'nnu', 'Nn5g27755' => 'nnu', 'Nn6g34260' => 'nnu', 'Nn6g35041' => 'nnu', 'Oeu005924.1' => 'oeu', 'Oeu008383.1' => 'oeu', 'Oeu014928.1' => 'oeu', 'Oeu019889.1' => 'oeu', 'Oeu022271.1' => 'oeu', 'Oeu025271.1' => 'oeu', 'Oeu036302.1' => 'oeu', 'Oeu044100.1' => 'oeu', 'Os01g0528300' => 'osa', 'Os03g0286200' => 'osa', 'Os04g0406600' => 'osa', 'Os07g0512000' => 'osa', 'Os07g0694600' => 'osa', 'Os08g0411000' => 'osa', 'Os09g0565700' => 'osa', 'Os09g0566050' => 'osa', 'Os10g0523700' => 'osa', 'Peaxi162Scf00002g00514' => 'pax', 'Peaxi162Scf00047g01817' => 'pax', 'Peaxi162Scf00114g00001' => 'pax', 'Peaxi162Scf00147g00613' => 'pax', 'Peaxi162Scf00389g00425' => 'pax', 'PGR042G1139' => 'pgr', 'PGR042G3273' => 'pgr', 'PGR102G2180' => 'pgr', 'PGR119G0234' => 'pgr', 'PGR119G0668' => 'pgr', 'PGSC0003DMG400007122' => 'stu', 'PGSC0003DMG400016478' => 'stu', 'PGSC0003DMG400025374' => 'stu', 'PGSC0003DMG400026536' => 'stu', 'Phvul.003G079600' => 'pvu', 'Phvul.005G115600' => 'pvu', 'Phvul.005G127100' => 'pvu', 'Phvul.006G149500' => 'pvu', 'Phvul.006G149600' => 'pvu', 'Phvul.011G071800' => 'pvu', 'Phvul.011G090400' => 'pvu', 'Potri.004G013400' => 'ptr', 'Potri.004G188100' => 'ptr', 'Potri.008G195500' => 'ptr', 'Potri.009G148800' => 'ptr', 'Potri.011G004700' => 'ptr', 'Pp3c17_22810' => 'ppa', 'Pp3c18_4480' => 'ppa', 'Pp3c19_13030' => 'ppa', 'Pp3c1_33620' => 'ppa', 'Pp3c2_9380' => 'ppa', 'PRCOL_00001023' => 'pco', 'Prupe.3G216300' => 'ppe', 'Prupe.4G019500' => 'ppe', 'Prupe.6G092500' => 'ppe', 'Prupe.6G119200' => 'ppe', 'Psat0s1945g0080' => 'psa', 'Psat0s4167g0040' => 'psa', 'Psat1g185800' => 'psa', 'Psat4g006440' => 'psa', 'Psat4g006480' => 'psa', 'Psat4g168120' => 'psa', 'Psat5g255680' => 'psa', 'Psat5g261760' => 'psa', 'Psat7g222120' => 'psa', 'PSO063G7252' => 'pso', 'PSO170G4778' => 'pso', 'PSO210G2249' => 'pso', 'PSO339G2411' => 'pso', 'PSO339G2457' => 'pso', 'PSO339G2854' => 'pso', 'PSO339G4288' => 'pso', 'PSO339G4615' => 'pso', 'PSO384G2796' => 'pso', 'PSO384G2940' => 'pso', 'PSO384G4227' => 'pso', 'PSO478G1425' => 'pso', 'PSO541G3863' => 'pso', 'PSO675G0507' => 'pso', 'PSO782G0338' => 'pso', 'PSO832G0644' => 'pso', 'QL01p013664' => 'qlo', 'QL01p036598' => 'qlo', 'QL05p072984' => 'qlo', 'QL08p005768' => 'qlo', 'QL08p032743' => 'qlo', 'QL93p0073_0439' => 'qlo', 'QL93p0073_0444' => 'qlo', 'RcHm_v2.0_Chr5g0002851' => 'rch', 'RcHm_v2.0_Chr5g0055201' => 'rch', 'RcHm_v2.0_Chr5g0061191' => 'rch', 'RcHm_v2.0_Chr7g0203231' => 'rch', 'Rhsim01G0208100' => 'rsi', 'Rhsim01G0208200' => 'rsi', 'Rhsim02G0106500' => 'rsi', 'Rhsim03G0107900' => 'rsi', 'Rhsim06G0163400' => 'rsi', 'Rhsim13G0105200' => 'rsi', 'Sabra04G0006300' => 'sbr', 'Sabra04G0127000' => 'sbr', 'Sabra08G0148700' => 'sbr', 'Sabra09G0117400' => 'sbr', 'SalBow1G3326' => 'sbo', 'SalBow3G3228' => 'sbo', 'SalBow6G1634' => 'sbo', 'SalBow6G3603' => 'sbo', 'SalBow6G5266' => 'sbo', 'SalBow7G2265' => 'sbo', 'SalBow8G0850' => 'sbo', 'SalBow8G2592' => 'sbo', 'Sc05g0009240' => 'sci', 'Sc12g0002300' => 'sci', 'Sc21g0000100' => 'sci', 'Sc21g0004720' => 'sci', 'Sed0002949' => 'sed', 'Sed0004114' => 'sed', 'Sed0004306' => 'sed', 'Sed0006172' => 'sed', 'Sed0008413' => 'sed', 'Sed0013809' => 'sed', 'Sed0019556' => 'sed', 'SEGI_03570' => 'sgi', 'SEGI_07859' => 'sgi', 'SEGI_15042' => 'sgi', 'SEGI_16263' => 'sgi', 'SEGI_16552' => 'sgi', 'SEGI_24331' => 'sgi', 'SEGI_27316' => 'sgi', 'SEGI_29521' => 'sgi', 'SEGI_41342' => 'sgi', 'SGA_v2.0_scaffold27G11617' => 'sas', 'SGA_v2.0_scaffold316G48428' => 'sas', 'SGA_v2.0_scaffold49G18261' => 'sas', 'SGA_v2.0_scaffold7G03831' => 'sas', 'SGA_v2.0_scaffold93G28359' => 'sas', 'SHI02210' => 'shi', 'SHI06028' => 'shi', 'SHI06321' => 'shi', 'SMO111G0012' => 'smo', 'SMO228G0080' => 'smo', 'SMO356G0756' => 'smo', 'Solyc02g080620.3' => 'sly', 'Solyc06g074530.1' => 'sly', 'Solyc11g066890.1' => 'sly', 'Solyc11g072520.3' => 'sly', 'Sopen02g025330' => 'spe', 'Sopen06g031000' => 'spe', 'Sopen09g008240' => 'spe', 'Sopen09g025210' => 'spe', 'Sopen11g026600' => 'spe', 'Sopen11g030170' => 'spe', 'Sp1g10420' => 'spa', 'Sp3g06570' => 'spa', 'Sp4g10660' => 'spa', 'Sp5g16460' => 'spa', 'Sp6g22710' => 'spa', 'TAR365G0112' => 'tar', 'TAR369G0717' => 'tar', 'TAR374G0976' => 'tar', 'TAR623G1128' => 'tar', 'TAR626G1937' => 'tar', 'TAR627G0123' => 'tar', 'TAR628G0305' => 'tar', 'TAR636G1176' => 'tar', 'TAR636G2442' => 'tar', 'THA.LOC104800556' => 'tha', 'THA.LOC104809501' => 'tha', 'THA.LOC104815126' => 'tha', 'THA.LOC104815732' => 'tha', 'THA.LOC104823528' => 'tha', 'Thecc.02G365600' => 'tca', 'Thecc.06G222300' => 'tca', 'Thecc.09G261800' => 'tca', 'Thecc.09G291400' => 'tca', 'Thhalv10003028m.g' => 'esa', 'Thhalv10007886m.g' => 'esa', 'Thhalv10016085m.g' => 'esa', 'Thhalv10016681m.g' => 'esa', 'Thhalv10020951m.g' => 'esa', 'TPR.G15598' => 'tpr', 'TPR.G29305' => 'tpr', 'TPR.G32395' => 'tpr', 'TPR.G36998' => 'tpr', 'TPR.G4227' => 'tpr', 'TWI18G1433' => 'twi', 'TWI31G0755' => 'twi', 'TWI38G0912' => 'twi', 'TWI75G1097' => 'twi', 'TWI75G1619' => 'twi', 'TWI79G1336' => 'twi', 'unitig_0.g943' => 'ugi', 'unitig_0.g944' => 'ugi', 'unitig_22.g6646' => 'ugi', 'unitig_37.g12681' => 'ugi', 'unitig_8.g3290' => 'ugi', 'vmacro03278' => 'vma', 'vmacro12197' => 'vma', 'vmacro14478' => 'vma', 'vmacro15787' => 'vma', 'vmacro15789' => 'vma', 'vmacro15790' => 'vma', 'vmacro15806' => 'vma', 'vmacro22907' => 'vma', 'vmacro22908' => 'vma', 'vmacro22909' => 'vma', 'vmacro23108' => 'vma', 'VMungo0540G0540' => 'vmu', 'VMungo0540G2468' => 'vmu', 'VMungo1080G0390' => 'vmu', 'VMungo1080G1165' => 'vmu', 'VMungo1127G0170' => 'vmu', 'VMungo1127G2099' => 'vmu', 'VMungo1215G3013' => 'vmu', 'Zm00001eb013110' => 'zma', 'Zm00001eb084260' => 'zma', 'Zm00001eb096110' => 'zma', 'Zm00001eb217510' => 'zma', 'Zm00001eb322550' => 'zma', 'Zm00001eb390770' => 'zma', 'Zm00001eb397170' => 'zma', 'Zm00001eb404610' => 'zma', 'Zm00001eb421790' => 'zma' ) $gf_id = 'HOM05D000911' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000911' ) $data_identifier = 'HOM05D000911' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 16, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 5, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 6, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 8, 'nnu' => (int) 16, 'oeu' => (int) 8, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 5, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 16, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421790' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000911', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27780' => 'bna', 'A03p35380' => 'bna', 'A04p21160' => 'bna', 'A05p40570' => 'bna', 'A06p26900' => 'bna', 'A08p33230' => 'bna', 'A09p65960' => 'bna', 'A10p18290' => 'bna', 'Aa31LG1G12990' => 'aar', 'Aa31LG1G2980' => 'aar', 'Aa31LG4G14320' => 'aar', 'Aa31LG7G11800' => 'aar', 'Aa31sc36G50' => 'aar', 'Aa31sc36G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3721' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5459' => 'aag', 'Actinidia03028' => 'ach', 'Actinidia03753' => 'ach', 'Actinidia04187' => 'ach', 'Actinidia05509' => 'ach', 'Actinidia24180' => 'ach', 'Actinidia26906' => 'ach', 'Actinidia37097' => 'ach', 'Actinidia38249' => 'ach', 'Ah.01g003470' => 'amhyb', 'Ah.01g004580' => 'amhyb', 'Ah.01g014850' => 'amhyb', 'Ah.01g016830' => 'amhyb', 'Ah.14g088000' => 'amhyb', 'AL1G22980' => 'aly', 'AL3G18990' => 'aly', 'AL4G22440' => 'aly', 'AL4G33180' => 'aly', 'AL5G22920' => 'aly', 'AL6G33660' => 'aly', 'AL8G20720' => 'aly', 'Aqoxy1G00935' => 'aox', 'Aqoxy1G02094' => 'aox', 'Aqoxy2G01239' => 'aox', 'Aqoxy4G01870' => 'aox', 'Aqoxy7G00450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.36ZVTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71EM27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5D6C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH3WRE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3NCM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RIM768' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YB5YRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z36GDV' => 'arhy', 'AT1G08250' => 'ath', 'AT1G11790' => 'ath', 'AT2G27820' => 'ath', 'AT3G07630' => 'ath', 'AT3G44720' => 'ath', 'AT5G22630' => 'ath', 'ATR0693G304' => 'atr', 'ATR0794G109' => 'atr', 'ATR0820G120' => 'atr', 'ATR1159G064' => 'atr', 'Atru.chr10.2239' => 'acertr', 'Atru.chr3.3371' => 'acertr', 'Atru.chr6.3202' => 'acertr', 'AUR62006499' => 'cqu', 'AUR62012718' => 'cqu', 'AUR62021938' => 'cqu', 'AUR62023932' => 'cqu', 'AUR62025034' => 'cqu', 'AUR62025035' => 'cqu', 'AUR62038307' => 'cqu', 'AUR62043466' => 'cqu', 'BcaB02g10748' => 'bca', 'BcaB03g13231' => 'bca', 'BcaB03g14689' => 'bca', 'BcaB05g22716' => 'bca', 'BcaB06g28172' => 'bca', 'BcaB08g36413' => 'bca', 'BcaC01g02186' => 'bca', 'BcaC01g04272' => 'bca', 'BcaC02g08080' => 'bca', 'BcaC02g08227' => 'bca', 'BcaC03g13901' => 'bca', 'BcaC04g19593' => 'bca', 'BcaC04g20874' => 'bca', 'BcaC05g29557' => 'bca', 'BcaC06g35505' => 'bca', 'BcaC07g41954' => 'bca', 'BcaC07g41955' => 'bca', 'BcaC07g41956' => 'bca', 'BcaC07g42519' => 'bca', 'BcaC07g42520' => 'bca', 'BcaC07g42523' => 'bca', 'BcaC07g42524' => 'bca', 'BcaC07g42525' => 'bca', 'BcaC08g47480' => 'bca', 'BcaC08g47481' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00530' => 'bna', 'BolC2t07178H' => 'bol', 'BolC3t16567H' => 'bol', 'BolC4t27234H' => 'bol', 'BolC5t29728H' => 'bol', 'BolC5t34622H' => 'bol', 'BolC6t40321H' => 'bol', 'BolC7t42028H' => 'bol', 'BolC8t49125H' => 'bol', 'BolC8t52538H' => 'bol', 'BolC8t52539H' => 'bol', 'BolC9t56681H' => 'bol', 'BolC9t58266H' => 'bol', 'BolSC21t60294H' => 'bol', 'BraA02t05670Z' => 'bra', 'BraA03t12716Z' => 'bra', 'BraA04t17685Z' => 'bra', 'BraA05t22788Z' => 'bra', 'BraA06t24032Z' => 'bra', 'BraA06t25625Z' => 'bra', 'BraA07t27930Z' => 'bra', 'BraA08t35242Z' => 'bra', 'BraA09t38609Z' => 'bra', 'BraA10t43905Z' => 'bra', 'C02p11060' => 'bna', 'C03p42990' => 'bna', 'C03p67310' => 'bna', 'C04p56990' => 'bna', 'C04p58660' => 'bna', 'C05p09890' => 'bna', 'C05p59680' => 'bna', 'C06p19830' => 'bna', 'C06p53040' => 'bna', 'C07p15230' => 'bna', 'C08p50070' => 'bna', 'C08p50090' => 'bna', 'C09p38330' => 'bna', 'C09p53940' => 'bna', 'CAN.G1014.1' => 'can', 'CAN.G644.30' => 'can', 'CAN.G84.47' => 'can', 'CAN.G919.8' => 'can', 'CANSAT54G0113' => 'cansat', 'CANSAT54G1286' => 'cansat', 'CANSAT64G1020' => 'cansat', 'CARHR008080' => 'chi', 'CARHR008090' => 'chi', 'CARHR012130' => 'chi', 'CARHR038390' => 'chi', 'CARHR082330' => 'chi', 'CARHR120520' => 'chi', 'CARHR151470' => 'chi', 'CARHR190950' => 'chi', 'Carub.0001s0760' => 'cru', 'Carub.0001s1146' => 'cru', 'Carub.0003s0721' => 'cru', 'Carub.0004s0858' => 'cru', 'Carub.0005s1040' => 'cru', 'Carub.0006s2035' => 'cru', 'Carub.0015s0005' => 'cru', 'Ca_01607_v3' => 'car', 'Ca_01677_v3' => 'car', 'Ca_06087_v3' => 'car', 'Ca_19238_v3' => 'car', 'Ca_19373_v3' => 'car', 'Ca_21079_v3' => 'car', 'CBR_g54016' => 'cbr', 'CBR_g54018' => 'cbr', 'CBR_g54020' => 'cbr', 'Cc01_g09780' => 'ccan', 'Cc01_g11680' => 'ccan', 'Cc02_g15610' => 'ccan', 'Cc05_g04350' => 'ccan', 'Cc09_g01580' => 'ccan', 'CDE01G0795' => 'cde', 'CDE02G2024' => 'cde', 'CDE02G2260' => 'cde', 'CDE02G4561' => 'cde', 'CDE05G2733' => 'cde', 'CDE05G3422' => 'cde', 'CDE06G2003' => 'cde', 'CDE08G0576' => 'cde', 'CDE09G0048' => 'cde', 'CDE11G0805' => 'cde', 'Cfa003644' => 'cfa', 'Cfa006290' => 'cfa', 'Cfa010080' => 'cfa', 'Cfa011376' => 'cfa', 'Cfa011576' => 'cfa', 'Cfa011577' => 'cfa', 'Cfa014389' => 'cfa', 'Ciclev10006044m.g' => 'ccl', 'Ciclev10006954m.g' => 'ccl', 'Ciclev10015131m.g' => 'ccl', 'Ciclev10015580m.g' => 'ccl', 'Ciclev10028359m.g' => 'ccl', 'Ciclev10028573m.g' => 'ccl', 'CiPaw.03G159300' => 'cil', 'CiPaw.04G115100' => 'cil', 'CiPaw.09G092800' => 'cil', 'CiPaw.10G071800' => 'cil', 'CiPaw.13G105800' => 'cil', 'CiPaw.13G141000' => 'cil', 'CiPaw.14G103400' => 'cil', 'ClCG01G012700' => 'cla', 'ClCG01G012720' => 'cla', 'ClCG01G021920' => 'cla', 'ClCG02G008870' => 'cla', 'ClCG02G020840' => 'cla', 'ClCG02G021930' => 'cla', 'COL.COLO4_19302' => 'col', 'COL.COLO4_25262' => 'col', 'COL.COLO4_31788' => 'col', 'Cpa.g.c34684' => 'cpa', 'Cpa.g.c36520.1' => 'cpa', 'Cpa.g.c45626' => 'cpa', 'Cpa.g.sc121.17' => 'cpa', 'Cpa.g.sc13.22' => 'cpa', 'Cpa.g.sc87.88' => 'cpa', 'Cre06.g261800' => 'cre', 'CsaV3_1G014500' => 'csa', 'CsaV3_1G014510' => 'csa', 'CsaV3_2G034880' => 'csa', 'CsaV3_6G014760' => 'csa', 'CsaV3_6G021500' => 'csa', 'CsaV3_6G048980' => 'csa', 'CSS0002511' => 'camsi', 'CSS0007556' => 'camsi', 'CSS0008532' => 'camsi', 'CSS0009709' => 'camsi', 'CSS0010486' => 'camsi', 'CSS0016768' => 'camsi', 'CSS0023512' => 'camsi', 'CSS0025341' => 'camsi', 'CSS0027999' => 'camsi', 'CSS0028944' => 'camsi', 'CSS0032292' => 'camsi', 'CSS0032464' => 'camsi', 'CSS0037153' => 'camsi', 'CSS0039256' => 'camsi', 'CSS0048392' => 'camsi', 'CSS0050458' => 'camsi', 'DCAR_004224' => 'dca', 'DCAR_006147' => 'dca', 'DCAR_006465' => 'dca', 'DCAR_008159' => 'dca', 'DCAR_012164' => 'dca', 'DCAR_019764' => 'dca', 'Dinv05418' => 'din', 'Dinv10839' => 'din', 'Dinv12521' => 'din', 'Dinv13900' => 'din', 'Dinv29426' => 'din', 'Duzib150G0263' => 'dzi', 'Duzib168G1178' => 'dzi', 'Duzib168G1924' => 'dzi', 'Duzib170G0299' => 'dzi', 'Duzib170G0813' => 'dzi', 'Duzib235G1128' => 'dzi', 'Duzib248G1060' => 'dzi', 'ECA232G1910' => 'eca', 'ECA233G4621' => 'eca', 'ECA238G1216' => 'eca', 'ECA238G1784' => 'eca', 'ECA248G1242' => 'eca', 'EL10Ac8g20071' => 'bvu', 'EL10Ac9g21086' => 'bvu', 'EL10Ac9g22407' => 'bvu', 'EL10Ac9g22412' => 'bvu', 'Eucgr.A01119' => 'egr', 'Eucgr.E04043' => 'egr', 'Eucgr.J00428' => 'egr', 'Eucgr.J00958' => 'egr', 'FAN11G3091' => 'fan', 'FAN11G3651' => 'fan', 'FAN16G2566' => 'fan', 'FAN21G3155' => 'fan', 'FAN21G3400' => 'fan', 'FAN21G3543' => 'fan', 'FAN25G0234' => 'fan', 'FAN25G1422' => 'fan', 'FAN25G3392' => 'fan', 'FvH4_3g01940' => 'fve', 'FvH4_3g29870' => 'fve', 'FvH4_3g33680' => 'fve', 'Glyma.09G004200' => 'gma', 'Glyma.11G151288' => 'gma', 'Glyma.11G189100' => 'gma', 'Glyma.12G072500' => 'gma', 'Glyma.12G085500' => 'gma', 'Glyma.12G181800' => 'gma', 'Glyma.12G193000' => 'gma', 'Glyma.13G309300' => 'gma', 'Glyma.13G319000' => 'gma', 'Glyma.17G012600' => 'gma', 'Gohir.A06G148600' => 'ghi', 'Gohir.A07G115800' => 'ghi', 'Gohir.A08G003600' => 'ghi', 'Gohir.A09G093300' => 'ghi', 'Gohir.A09G105400' => 'ghi', 'Gohir.A09G105500' => 'ghi', 'Gohir.D06G154600' => 'ghi', 'Gohir.D07G120200' => 'ghi', 'Gohir.D08G013900' => 'ghi', 'Gohir.D09G093100' => 'ghi', 'Gohir.D09G102200' => 'ghi', 'Gohir.D09G102300' => 'ghi', 'Gorai.001G129400' => 'gra', 'Gorai.004G008200' => 'gra', 'Gorai.006G109800' => 'gra', 'Gorai.006G119500' => 'gra', 'Gorai.006G121300' => 'gra', 'Gorai.010G180700' => 'gra', 'GSVIVG01012716001' => 'vvi', 'GSVIVG01025118001' => 'vvi', 'GSVIVG01030439001' => 'vvi', 'GSVIVG01031397001' => 'vvi', 'HanXRQChr01g0004201' => 'han', 'HanXRQChr02g0054941' => 'han', 'HanXRQChr05g0141811' => 'han', 'HanXRQChr07g0197751' => 'han', 'HanXRQChr11g0346691' => 'han', 'HanXRQChr13g0396971' => 'han', 'HanXRQChr14g0432951' => 'han', 'HanXRQChr14g0452001' => 'han', 'HanXRQChr15g0496681' => 'han', 'HanXRQChr17g0557491' => 'han', 'HanXRQChr17g0557501' => 'han', 'Haze_06809' => 'cav', 'Haze_12852' => 'cav', 'Haze_15850' => 'cav', 'Haze_23446' => 'cav', 'Haze_23942' => 'cav', 'Haze_23943' => 'cav', 'Hma1.2p1_0091F.1_g046450' => 'hma', 'Hma1.2p1_0128F.1_g059910' => 'hma', 'Hma1.2p1_0249F.1_g102260' => 'hma', 'Hma1.2p1_0453F.1_g156190' => 'hma', 'Hma1.2p1_0695F.1_g204380' => 'hma', 'Hma1.2p1_0749F.1_g212650' => 'hma', 'Hma1.2p1_2156F.1_g315420' => 'hma', 'Hma1.2p1_2686F.1_g326940' => 'hma', 'HPP92_006428' => 'vpl', 'HPP92_012069' => 'vpl', 'HPP92_014129' => 'vpl', 'HPP92_014133' => 'vpl', 'HPP92_017315' => 'vpl', 'HPP92_026445' => 'vpl', 'HPP92_026446' => 'vpl', 'Hund00774' => 'sun', 'Hund07682' => 'sun', 'Hund21413' => 'sun', 'Hund23462' => 'sun', 'Hund23463' => 'sun', 'Lalb_Chr03g0027911' => 'lal', 'Lalb_Chr13g0304271' => 'lal', 'Lalb_Chr19g0137471' => 'lal', 'Lalb_Chr22g0350651' => 'lal', 'Lalb_Chr24g0395151' => 'lal', 'Lj1A1231T40' => 'lonja', 'Lj1A221T48' => 'lonja', 'Lj1C924T12' => 'lonja', 'Lj2C993G6' => 'lonja', 'Lj3g0005790' => 'lja', 'Lj3g0015432' => 'lja', 'Lj3g0017722' => 'lja', 'Lj3g0018497' => 'lja', 'Lj4g0025071' => 'lja', 'Lsat_1_v5_gn_1_129680' => 'lsa', 'Lsat_1_v5_gn_2_25321' => 'lsa', 'Lsat_1_v5_gn_2_95461' => 'lsa', 'Lsat_1_v5_gn_4_159620' => 'lsa', 'Lsat_1_v5_gn_6_41301' => 'lsa', 'Lsat_1_v5_gn_6_74660' => 'lsa', 'Lsat_1_v5_gn_7_11520' => 'lsa', 'Lsat_1_v5_gn_9_67680' => 'lsa', 'Manes.04G008300' => 'mes', 'Manes.04G008400' => 'mes', 'Manes.04G026500' => 'mes', 'Manes.10G135300' => 'mes', 'Manes.11G157300' => 'mes', 'Manes.12G074000' => 'mes', 'Manes.16G006200' => 'mes', 'Manes.17G026400' => 'mes', 'Mapoly0024s0086' => 'mpo', 'Mapoly0024s0087' => 'mpo', 'Mapoly0071s0057' => 'mpo', 'Mapoly0204s0012' => 'mpo', 'MBI04_g37681_MAGBIO' => 'mbi', 'MBI05_g17779_MAGBIO' => 'mbi', 'MBI12_g31184_MAGBIO' => 'mbi', 'MBI17_g11083_MAGBIO' => 'mbi', 'MBI18_g03883_MAGBIO' => 'mbi', 'MBI18_g28940_MAGBIO' => 'mbi', 'MCO01G690' => 'mco', 'MD03G1109900' => 'mdo', 'MD03G1134800' => 'mdo', 'MD05G1348000' => 'mdo', 'MD10G1322400' => 'mdo', 'MD11G1123300' => 'mdo', 'MD11G1157600' => 'mdo', 'Medtr2g084875' => 'mtr', 'Medtr2g088130' => 'mtr', 'Medtr4g055310' => 'mtr', 'Medtr4g061070' => 'mtr', 'Medtr4g132250' => 'mtr', 'MELO3C004795.2' => 'cme', 'MELO3C004797.2' => 'cme', 'MELO3C007396.2' => 'cme', 'MELO3C019277.2' => 'cme', 'MELO3C021449.2' => 'cme', 'MELO3C025736.2' => 'cme', 'Migut.D02175' => 'egut', 'Migut.H01573' => 'egut', 'Migut.M01327' => 'egut', 'Migut.N02513' => 'egut', 'MSTRG.14638' => 'ama', 'MSTRG.18632' => 'ama', 'MSTRG.7203' => 'ama', 'Nitab4.5_0000533g0140' => 'nta', 'Nitab4.5_0000888g0150' => 'nta', 'Nitab4.5_0001453g0040' => 'nta', 'Nitab4.5_0002827g0090' => 'nta', 'Nitab4.5_0003082g0040' => 'nta', 'Nitab4.5_0007799g0040' => 'nta', 'Nitab4.5_0008983g0010' => 'nta', 'Nitab4.5_0009017g0020' => 'nta', 'Nn1g02132' => 'nnu', 'Nn1g03492' => 'nnu', 'Nn1g03493' => 'nnu', 'Nn1g03494' => 'nnu', 'Nn1g07164' => 'nnu', 'Nn1g07291' => 'nnu', 'Nn2g10655' => 'nnu', 'Nn2g11652' => 'nnu', 'Nn2g14008' => 'nnu', 'Nn3g17476' => 'nnu', 'Nn3g17477' => 'nnu', 'Nn4g22370' => 'nnu', 'Nn4g25255' => 'nnu', 'Nn5g27755' => 'nnu', 'Nn6g34260' => 'nnu', 'Nn6g35041' => 'nnu', 'Oeu005924.1' => 'oeu', 'Oeu008383.1' => 'oeu', 'Oeu014928.1' => 'oeu', 'Oeu019889.1' => 'oeu', 'Oeu022271.1' => 'oeu', 'Oeu025271.1' => 'oeu', 'Oeu036302.1' => 'oeu', 'Oeu044100.1' => 'oeu', 'Os01g0528300' => 'osa', 'Os03g0286200' => 'osa', 'Os04g0406600' => 'osa', 'Os07g0512000' => 'osa', 'Os07g0694600' => 'osa', 'Os08g0411000' => 'osa', 'Os09g0565700' => 'osa', 'Os09g0566050' => 'osa', 'Os10g0523700' => 'osa', 'Peaxi162Scf00002g00514' => 'pax', 'Peaxi162Scf00047g01817' => 'pax', 'Peaxi162Scf00114g00001' => 'pax', 'Peaxi162Scf00147g00613' => 'pax', 'Peaxi162Scf00389g00425' => 'pax', 'PGR042G1139' => 'pgr', 'PGR042G3273' => 'pgr', 'PGR102G2180' => 'pgr', 'PGR119G0234' => 'pgr', 'PGR119G0668' => 'pgr', 'PGSC0003DMG400007122' => 'stu', 'PGSC0003DMG400016478' => 'stu', 'PGSC0003DMG400025374' => 'stu', 'PGSC0003DMG400026536' => 'stu', 'Phvul.003G079600' => 'pvu', 'Phvul.005G115600' => 'pvu', 'Phvul.005G127100' => 'pvu', 'Phvul.006G149500' => 'pvu', 'Phvul.006G149600' => 'pvu', 'Phvul.011G071800' => 'pvu', 'Phvul.011G090400' => 'pvu', 'Potri.004G013400' => 'ptr', 'Potri.004G188100' => 'ptr', 'Potri.008G195500' => 'ptr', 'Potri.009G148800' => 'ptr', 'Potri.011G004700' => 'ptr', 'Pp3c17_22810' => 'ppa', 'Pp3c18_4480' => 'ppa', 'Pp3c19_13030' => 'ppa', 'Pp3c1_33620' => 'ppa', 'Pp3c2_9380' => 'ppa', 'PRCOL_00001023' => 'pco', 'Prupe.3G216300' => 'ppe', 'Prupe.4G019500' => 'ppe', 'Prupe.6G092500' => 'ppe', 'Prupe.6G119200' => 'ppe', 'Psat0s1945g0080' => 'psa', 'Psat0s4167g0040' => 'psa', 'Psat1g185800' => 'psa', 'Psat4g006440' => 'psa', 'Psat4g006480' => 'psa', 'Psat4g168120' => 'psa', 'Psat5g255680' => 'psa', 'Psat5g261760' => 'psa', 'Psat7g222120' => 'psa', 'PSO063G7252' => 'pso', 'PSO170G4778' => 'pso', 'PSO210G2249' => 'pso', 'PSO339G2411' => 'pso', 'PSO339G2457' => 'pso', 'PSO339G2854' => 'pso', 'PSO339G4288' => 'pso', 'PSO339G4615' => 'pso', 'PSO384G2796' => 'pso', 'PSO384G2940' => 'pso', 'PSO384G4227' => 'pso', 'PSO478G1425' => 'pso', 'PSO541G3863' => 'pso', 'PSO675G0507' => 'pso', 'PSO782G0338' => 'pso', 'PSO832G0644' => 'pso', 'QL01p013664' => 'qlo', 'QL01p036598' => 'qlo', 'QL05p072984' => 'qlo', 'QL08p005768' => 'qlo', 'QL08p032743' => 'qlo', 'QL93p0073_0439' => 'qlo', 'QL93p0073_0444' => 'qlo', 'RcHm_v2.0_Chr5g0002851' => 'rch', 'RcHm_v2.0_Chr5g0055201' => 'rch', 'RcHm_v2.0_Chr5g0061191' => 'rch', 'RcHm_v2.0_Chr7g0203231' => 'rch', 'Rhsim01G0208100' => 'rsi', 'Rhsim01G0208200' => 'rsi', 'Rhsim02G0106500' => 'rsi', 'Rhsim03G0107900' => 'rsi', 'Rhsim06G0163400' => 'rsi', 'Rhsim13G0105200' => 'rsi', 'Sabra04G0006300' => 'sbr', 'Sabra04G0127000' => 'sbr', 'Sabra08G0148700' => 'sbr', 'Sabra09G0117400' => 'sbr', 'SalBow1G3326' => 'sbo', 'SalBow3G3228' => 'sbo', 'SalBow6G1634' => 'sbo', 'SalBow6G3603' => 'sbo', 'SalBow6G5266' => 'sbo', 'SalBow7G2265' => 'sbo', 'SalBow8G0850' => 'sbo', 'SalBow8G2592' => 'sbo', 'Sc05g0009240' => 'sci', 'Sc12g0002300' => 'sci', 'Sc21g0000100' => 'sci', 'Sc21g0004720' => 'sci', 'Sed0002949' => 'sed', 'Sed0004114' => 'sed', 'Sed0004306' => 'sed', 'Sed0006172' => 'sed', 'Sed0008413' => 'sed', 'Sed0013809' => 'sed', 'Sed0019556' => 'sed', 'SEGI_03570' => 'sgi', 'SEGI_07859' => 'sgi', 'SEGI_15042' => 'sgi', 'SEGI_16263' => 'sgi', 'SEGI_16552' => 'sgi', 'SEGI_24331' => 'sgi', 'SEGI_27316' => 'sgi', 'SEGI_29521' => 'sgi', 'SEGI_41342' => 'sgi', 'SGA_v2.0_scaffold27G11617' => 'sas', 'SGA_v2.0_scaffold316G48428' => 'sas', 'SGA_v2.0_scaffold49G18261' => 'sas', 'SGA_v2.0_scaffold7G03831' => 'sas', 'SGA_v2.0_scaffold93G28359' => 'sas', 'SHI02210' => 'shi', 'SHI06028' => 'shi', 'SHI06321' => 'shi', 'SMO111G0012' => 'smo', 'SMO228G0080' => 'smo', 'SMO356G0756' => 'smo', 'Solyc02g080620.3' => 'sly', 'Solyc06g074530.1' => 'sly', 'Solyc11g066890.1' => 'sly', 'Solyc11g072520.3' => 'sly', 'Sopen02g025330' => 'spe', 'Sopen06g031000' => 'spe', 'Sopen09g008240' => 'spe', 'Sopen09g025210' => 'spe', 'Sopen11g026600' => 'spe', 'Sopen11g030170' => 'spe', 'Sp1g10420' => 'spa', 'Sp3g06570' => 'spa', 'Sp4g10660' => 'spa', 'Sp5g16460' => 'spa', 'Sp6g22710' => 'spa', 'TAR365G0112' => 'tar', 'TAR369G0717' => 'tar', 'TAR374G0976' => 'tar', 'TAR623G1128' => 'tar', 'TAR626G1937' => 'tar', 'TAR627G0123' => 'tar', 'TAR628G0305' => 'tar', 'TAR636G1176' => 'tar', 'TAR636G2442' => 'tar', 'THA.LOC104800556' => 'tha', 'THA.LOC104809501' => 'tha', 'THA.LOC104815126' => 'tha', 'THA.LOC104815732' => 'tha', 'THA.LOC104823528' => 'tha', 'Thecc.02G365600' => 'tca', 'Thecc.06G222300' => 'tca', 'Thecc.09G261800' => 'tca', 'Thecc.09G291400' => 'tca', 'Thhalv10003028m.g' => 'esa', 'Thhalv10007886m.g' => 'esa', 'Thhalv10016085m.g' => 'esa', 'Thhalv10016681m.g' => 'esa', 'Thhalv10020951m.g' => 'esa', 'TPR.G15598' => 'tpr', 'TPR.G29305' => 'tpr', 'TPR.G32395' => 'tpr', 'TPR.G36998' => 'tpr', 'TPR.G4227' => 'tpr', 'TWI18G1433' => 'twi', 'TWI31G0755' => 'twi', 'TWI38G0912' => 'twi', 'TWI75G1097' => 'twi', 'TWI75G1619' => 'twi', 'TWI79G1336' => 'twi', 'unitig_0.g943' => 'ugi', 'unitig_0.g944' => 'ugi', 'unitig_22.g6646' => 'ugi', 'unitig_37.g12681' => 'ugi', 'unitig_8.g3290' => 'ugi', 'vmacro03278' => 'vma', 'vmacro12197' => 'vma', 'vmacro14478' => 'vma', 'vmacro15787' => 'vma', 'vmacro15789' => 'vma', 'vmacro15790' => 'vma', 'vmacro15806' => 'vma', 'vmacro22907' => 'vma', 'vmacro22908' => 'vma', 'vmacro22909' => 'vma', 'vmacro23108' => 'vma', 'VMungo0540G0540' => 'vmu', 'VMungo0540G2468' => 'vmu', 'VMungo1080G0390' => 'vmu', 'VMungo1080G1165' => 'vmu', 'VMungo1127G0170' => 'vmu', 'VMungo1127G2099' => 'vmu', 'VMungo1215G3013' => 'vmu', 'Zm00001eb013110' => 'zma', 'Zm00001eb084260' => 'zma', 'Zm00001eb096110' => 'zma', 'Zm00001eb217510' => 'zma', 'Zm00001eb322550' => 'zma', 'Zm00001eb390770' => 'zma', 'Zm00001eb397170' => 'zma', 'Zm00001eb404610' => 'zma', 'Zm00001eb421790' => 'zma' ), 'gf_id' => 'HOM05D000911', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000911' ), 'data_identifier' => 'HOM05D000911', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000911', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27780' => 'bna', 'A03p35380' => 'bna', 'A04p21160' => 'bna', 'A05p40570' => 'bna', 'A06p26900' => 'bna', 'A08p33230' => 'bna', 'A09p65960' => 'bna', 'A10p18290' => 'bna', 'Aa31LG1G12990' => 'aar', 'Aa31LG1G2980' => 'aar', 'Aa31LG4G14320' => 'aar', 'Aa31LG7G11800' => 'aar', 'Aa31sc36G50' => 'aar', 'Aa31sc36G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3721' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5459' => 'aag', 'Actinidia03028' => 'ach', 'Actinidia03753' => 'ach', 'Actinidia04187' => 'ach', 'Actinidia05509' => 'ach', 'Actinidia24180' => 'ach', 'Actinidia26906' => 'ach', 'Actinidia37097' => 'ach', 'Actinidia38249' => 'ach', 'Ah.01g003470' => 'amhyb', 'Ah.01g004580' => 'amhyb', 'Ah.01g014850' => 'amhyb', 'Ah.01g016830' => 'amhyb', 'Ah.14g088000' => 'amhyb', 'AL1G22980' => 'aly', 'AL3G18990' => 'aly', 'AL4G22440' => 'aly', 'AL4G33180' => 'aly', 'AL5G22920' => 'aly', 'AL6G33660' => 'aly', 'AL8G20720' => 'aly', 'Aqoxy1G00935' => 'aox', 'Aqoxy1G02094' => 'aox', 'Aqoxy2G01239' => 'aox', 'Aqoxy4G01870' => 'aox', 'Aqoxy7G00450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.36ZVTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71EM27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5D6C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH3WRE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3NCM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RIM768' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YB5YRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z36GDV' => 'arhy', 'AT1G08250' => 'ath', 'AT1G11790' => 'ath', 'AT2G27820' => 'ath', 'AT3G07630' => 'ath', 'AT3G44720' => 'ath', 'AT5G22630' => 'ath', 'ATR0693G304' => 'atr', 'ATR0794G109' => 'atr', 'ATR0820G120' => 'atr', 'ATR1159G064' => 'atr', 'Atru.chr10.2239' => 'acertr', 'Atru.chr3.3371' => 'acertr', 'Atru.chr6.3202' => 'acertr', 'AUR62006499' => 'cqu', 'AUR62012718' => 'cqu', 'AUR62021938' => 'cqu', 'AUR62023932' => 'cqu', 'AUR62025034' => 'cqu', 'AUR62025035' => 'cqu', 'AUR62038307' => 'cqu', 'AUR62043466' => 'cqu', 'BcaB02g10748' => 'bca', 'BcaB03g13231' => 'bca', 'BcaB03g14689' => 'bca', 'BcaB05g22716' => 'bca', 'BcaB06g28172' => 'bca', 'BcaB08g36413' => 'bca', 'BcaC01g02186' => 'bca', 'BcaC01g04272' => 'bca', 'BcaC02g08080' => 'bca', 'BcaC02g08227' => 'bca', 'BcaC03g13901' => 'bca', 'BcaC04g19593' => 'bca', 'BcaC04g20874' => 'bca', 'BcaC05g29557' => 'bca', 'BcaC06g35505' => 'bca', 'BcaC07g41954' => 'bca', 'BcaC07g41955' => 'bca', 'BcaC07g41956' => 'bca', 'BcaC07g42519' => 'bca', 'BcaC07g42520' => 'bca', 'BcaC07g42523' => 'bca', 'BcaC07g42524' => 'bca', 'BcaC07g42525' => 'bca', 'BcaC08g47480' => 'bca', 'BcaC08g47481' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00530' => 'bna', 'BolC2t07178H' => 'bol', 'BolC3t16567H' => 'bol', 'BolC4t27234H' => 'bol', 'BolC5t29728H' => 'bol', 'BolC5t34622H' => 'bol', 'BolC6t40321H' => 'bol', 'BolC7t42028H' => 'bol', 'BolC8t49125H' => 'bol', 'BolC8t52538H' => 'bol', 'BolC8t52539H' => 'bol', 'BolC9t56681H' => 'bol', 'BolC9t58266H' => 'bol', 'BolSC21t60294H' => 'bol', 'BraA02t05670Z' => 'bra', 'BraA03t12716Z' => 'bra', 'BraA04t17685Z' => 'bra', 'BraA05t22788Z' => 'bra', 'BraA06t24032Z' => 'bra', 'BraA06t25625Z' => 'bra', 'BraA07t27930Z' => 'bra', 'BraA08t35242Z' => 'bra', 'BraA09t38609Z' => 'bra', 'BraA10t43905Z' => 'bra', 'C02p11060' => 'bna', 'C03p42990' => 'bna', 'C03p67310' => 'bna', 'C04p56990' => 'bna', 'C04p58660' => 'bna', 'C05p09890' => 'bna', 'C05p59680' => 'bna', 'C06p19830' => 'bna', 'C06p53040' => 'bna', 'C07p15230' => 'bna', 'C08p50070' => 'bna', 'C08p50090' => 'bna', 'C09p38330' => 'bna', 'C09p53940' => 'bna', 'CAN.G1014.1' => 'can', 'CAN.G644.30' => 'can', 'CAN.G84.47' => 'can', 'CAN.G919.8' => 'can', 'CANSAT54G0113' => 'cansat', 'CANSAT54G1286' => 'cansat', 'CANSAT64G1020' => 'cansat', 'CARHR008080' => 'chi', 'CARHR008090' => 'chi', 'CARHR012130' => 'chi', 'CARHR038390' => 'chi', 'CARHR082330' => 'chi', 'CARHR120520' => 'chi', 'CARHR151470' => 'chi', 'CARHR190950' => 'chi', 'Carub.0001s0760' => 'cru', 'Carub.0001s1146' => 'cru', 'Carub.0003s0721' => 'cru', 'Carub.0004s0858' => 'cru', 'Carub.0005s1040' => 'cru', 'Carub.0006s2035' => 'cru', 'Carub.0015s0005' => 'cru', 'Ca_01607_v3' => 'car', 'Ca_01677_v3' => 'car', 'Ca_06087_v3' => 'car', 'Ca_19238_v3' => 'car', 'Ca_19373_v3' => 'car', 'Ca_21079_v3' => 'car', 'CBR_g54016' => 'cbr', 'CBR_g54018' => 'cbr', 'CBR_g54020' => 'cbr', 'Cc01_g09780' => 'ccan', 'Cc01_g11680' => 'ccan', 'Cc02_g15610' => 'ccan', 'Cc05_g04350' => 'ccan', 'Cc09_g01580' => 'ccan', 'CDE01G0795' => 'cde', 'CDE02G2024' => 'cde', 'CDE02G2260' => 'cde', 'CDE02G4561' => 'cde', 'CDE05G2733' => 'cde', 'CDE05G3422' => 'cde', 'CDE06G2003' => 'cde', 'CDE08G0576' => 'cde', 'CDE09G0048' => 'cde', 'CDE11G0805' => 'cde', 'Cfa003644' => 'cfa', 'Cfa006290' => 'cfa', 'Cfa010080' => 'cfa', 'Cfa011376' => 'cfa', 'Cfa011576' => 'cfa', 'Cfa011577' => 'cfa', 'Cfa014389' => 'cfa', 'Ciclev10006044m.g' => 'ccl', 'Ciclev10006954m.g' => 'ccl', 'Ciclev10015131m.g' => 'ccl', 'Ciclev10015580m.g' => 'ccl', 'Ciclev10028359m.g' => 'ccl', 'Ciclev10028573m.g' => 'ccl', 'CiPaw.03G159300' => 'cil', 'CiPaw.04G115100' => 'cil', 'CiPaw.09G092800' => 'cil', 'CiPaw.10G071800' => 'cil', 'CiPaw.13G105800' => 'cil', 'CiPaw.13G141000' => 'cil', 'CiPaw.14G103400' => 'cil', 'ClCG01G012700' => 'cla', 'ClCG01G012720' => 'cla', 'ClCG01G021920' => 'cla', 'ClCG02G008870' => 'cla', 'ClCG02G020840' => 'cla', 'ClCG02G021930' => 'cla', 'COL.COLO4_19302' => 'col', 'COL.COLO4_25262' => 'col', 'COL.COLO4_31788' => 'col', 'Cpa.g.c34684' => 'cpa', 'Cpa.g.c36520.1' => 'cpa', 'Cpa.g.c45626' => 'cpa', 'Cpa.g.sc121.17' => 'cpa', 'Cpa.g.sc13.22' => 'cpa', 'Cpa.g.sc87.88' => 'cpa', 'Cre06.g261800' => 'cre', 'CsaV3_1G014500' => 'csa', 'CsaV3_1G014510' => 'csa', 'CsaV3_2G034880' => 'csa', 'CsaV3_6G014760' => 'csa', 'CsaV3_6G021500' => 'csa', 'CsaV3_6G048980' => 'csa', 'CSS0002511' => 'camsi', 'CSS0007556' => 'camsi', 'CSS0008532' => 'camsi', 'CSS0009709' => 'camsi', 'CSS0010486' => 'camsi', 'CSS0016768' => 'camsi', 'CSS0023512' => 'camsi', 'CSS0025341' => 'camsi', 'CSS0027999' => 'camsi', 'CSS0028944' => 'camsi', 'CSS0032292' => 'camsi', 'CSS0032464' => 'camsi', 'CSS0037153' => 'camsi', 'CSS0039256' => 'camsi', 'CSS0048392' => 'camsi', 'CSS0050458' => 'camsi', 'DCAR_004224' => 'dca', 'DCAR_006147' => 'dca', 'DCAR_006465' => 'dca', 'DCAR_008159' => 'dca', 'DCAR_012164' => 'dca', 'DCAR_019764' => 'dca', 'Dinv05418' => 'din', 'Dinv10839' => 'din', 'Dinv12521' => 'din', 'Dinv13900' => 'din', 'Dinv29426' => 'din', 'Duzib150G0263' => 'dzi', 'Duzib168G1178' => 'dzi', 'Duzib168G1924' => 'dzi', 'Duzib170G0299' => 'dzi', 'Duzib170G0813' => 'dzi', 'Duzib235G1128' => 'dzi', 'Duzib248G1060' => 'dzi', 'ECA232G1910' => 'eca', 'ECA233G4621' => 'eca', 'ECA238G1216' => 'eca', 'ECA238G1784' => 'eca', 'ECA248G1242' => 'eca', 'EL10Ac8g20071' => 'bvu', 'EL10Ac9g21086' => 'bvu', 'EL10Ac9g22407' => 'bvu', 'EL10Ac9g22412' => 'bvu', 'Eucgr.A01119' => 'egr', 'Eucgr.E04043' => 'egr', 'Eucgr.J00428' => 'egr', 'Eucgr.J00958' => 'egr', 'FAN11G3091' => 'fan', 'FAN11G3651' => 'fan', 'FAN16G2566' => 'fan', 'FAN21G3155' => 'fan', 'FAN21G3400' => 'fan', 'FAN21G3543' => 'fan', 'FAN25G0234' => 'fan', 'FAN25G1422' => 'fan', 'FAN25G3392' => 'fan', 'FvH4_3g01940' => 'fve', 'FvH4_3g29870' => 'fve', 'FvH4_3g33680' => 'fve', 'Glyma.09G004200' => 'gma', 'Glyma.11G151288' => 'gma', 'Glyma.11G189100' => 'gma', 'Glyma.12G072500' => 'gma', 'Glyma.12G085500' => 'gma', 'Glyma.12G181800' => 'gma', 'Glyma.12G193000' => 'gma', 'Glyma.13G309300' => 'gma', 'Glyma.13G319000' => 'gma', 'Glyma.17G012600' => 'gma', 'Gohir.A06G148600' => 'ghi', 'Gohir.A07G115800' => 'ghi', 'Gohir.A08G003600' => 'ghi', 'Gohir.A09G093300' => 'ghi', 'Gohir.A09G105400' => 'ghi', 'Gohir.A09G105500' => 'ghi', 'Gohir.D06G154600' => 'ghi', 'Gohir.D07G120200' => 'ghi', 'Gohir.D08G013900' => 'ghi', 'Gohir.D09G093100' => 'ghi', 'Gohir.D09G102200' => 'ghi', 'Gohir.D09G102300' => 'ghi', 'Gorai.001G129400' => 'gra', 'Gorai.004G008200' => 'gra', 'Gorai.006G109800' => 'gra', 'Gorai.006G119500' => 'gra', 'Gorai.006G121300' => 'gra', 'Gorai.010G180700' => 'gra', 'GSVIVG01012716001' => 'vvi', 'GSVIVG01025118001' => 'vvi', 'GSVIVG01030439001' => 'vvi', 'GSVIVG01031397001' => 'vvi', 'HanXRQChr01g0004201' => 'han', 'HanXRQChr02g0054941' => 'han', 'HanXRQChr05g0141811' => 'han', 'HanXRQChr07g0197751' => 'han', 'HanXRQChr11g0346691' => 'han', 'HanXRQChr13g0396971' => 'han', 'HanXRQChr14g0432951' => 'han', 'HanXRQChr14g0452001' => 'han', 'HanXRQChr15g0496681' => 'han', 'HanXRQChr17g0557491' => 'han', 'HanXRQChr17g0557501' => 'han', 'Haze_06809' => 'cav', 'Haze_12852' => 'cav', 'Haze_15850' => 'cav', 'Haze_23446' => 'cav', 'Haze_23942' => 'cav', 'Haze_23943' => 'cav', 'Hma1.2p1_0091F.1_g046450' => 'hma', 'Hma1.2p1_0128F.1_g059910' => 'hma', 'Hma1.2p1_0249F.1_g102260' => 'hma', 'Hma1.2p1_0453F.1_g156190' => 'hma', 'Hma1.2p1_0695F.1_g204380' => 'hma', 'Hma1.2p1_0749F.1_g212650' => 'hma', 'Hma1.2p1_2156F.1_g315420' => 'hma', 'Hma1.2p1_2686F.1_g326940' => 'hma', 'HPP92_006428' => 'vpl', 'HPP92_012069' => 'vpl', 'HPP92_014129' => 'vpl', 'HPP92_014133' => 'vpl', 'HPP92_017315' => 'vpl', 'HPP92_026445' => 'vpl', 'HPP92_026446' => 'vpl', 'Hund00774' => 'sun', 'Hund07682' => 'sun', 'Hund21413' => 'sun', 'Hund23462' => 'sun', 'Hund23463' => 'sun', 'Lalb_Chr03g0027911' => 'lal', 'Lalb_Chr13g0304271' => 'lal', 'Lalb_Chr19g0137471' => 'lal', 'Lalb_Chr22g0350651' => 'lal', 'Lalb_Chr24g0395151' => 'lal', 'Lj1A1231T40' => 'lonja', 'Lj1A221T48' => 'lonja', 'Lj1C924T12' => 'lonja', 'Lj2C993G6' => 'lonja', 'Lj3g0005790' => 'lja', 'Lj3g0015432' => 'lja', 'Lj3g0017722' => 'lja', 'Lj3g0018497' => 'lja', 'Lj4g0025071' => 'lja', 'Lsat_1_v5_gn_1_129680' => 'lsa', 'Lsat_1_v5_gn_2_25321' => 'lsa', 'Lsat_1_v5_gn_2_95461' => 'lsa', 'Lsat_1_v5_gn_4_159620' => 'lsa', 'Lsat_1_v5_gn_6_41301' => 'lsa', 'Lsat_1_v5_gn_6_74660' => 'lsa', 'Lsat_1_v5_gn_7_11520' => 'lsa', 'Lsat_1_v5_gn_9_67680' => 'lsa', 'Manes.04G008300' => 'mes', 'Manes.04G008400' => 'mes', 'Manes.04G026500' => 'mes', 'Manes.10G135300' => 'mes', 'Manes.11G157300' => 'mes', 'Manes.12G074000' => 'mes', 'Manes.16G006200' => 'mes', 'Manes.17G026400' => 'mes', 'Mapoly0024s0086' => 'mpo', 'Mapoly0024s0087' => 'mpo', 'Mapoly0071s0057' => 'mpo', 'Mapoly0204s0012' => 'mpo', 'MBI04_g37681_MAGBIO' => 'mbi', 'MBI05_g17779_MAGBIO' => 'mbi', 'MBI12_g31184_MAGBIO' => 'mbi', 'MBI17_g11083_MAGBIO' => 'mbi', 'MBI18_g03883_MAGBIO' => 'mbi', 'MBI18_g28940_MAGBIO' => 'mbi', 'MCO01G690' => 'mco', 'MD03G1109900' => 'mdo', 'MD03G1134800' => 'mdo', 'MD05G1348000' => 'mdo', 'MD10G1322400' => 'mdo', 'MD11G1123300' => 'mdo', 'MD11G1157600' => 'mdo', 'Medtr2g084875' => 'mtr', 'Medtr2g088130' => 'mtr', 'Medtr4g055310' => 'mtr', 'Medtr4g061070' => 'mtr', 'Medtr4g132250' => 'mtr', 'MELO3C004795.2' => 'cme', 'MELO3C004797.2' => 'cme', 'MELO3C007396.2' => 'cme', 'MELO3C019277.2' => 'cme', 'MELO3C021449.2' => 'cme', 'MELO3C025736.2' => 'cme', 'Migut.D02175' => 'egut', 'Migut.H01573' => 'egut', 'Migut.M01327' => 'egut', 'Migut.N02513' => 'egut', 'MSTRG.14638' => 'ama', 'MSTRG.18632' => 'ama', 'MSTRG.7203' => 'ama', 'Nitab4.5_0000533g0140' => 'nta', 'Nitab4.5_0000888g0150' => 'nta', 'Nitab4.5_0001453g0040' => 'nta', 'Nitab4.5_0002827g0090' => 'nta', 'Nitab4.5_0003082g0040' => 'nta', 'Nitab4.5_0007799g0040' => 'nta', 'Nitab4.5_0008983g0010' => 'nta', 'Nitab4.5_0009017g0020' => 'nta', 'Nn1g02132' => 'nnu', 'Nn1g03492' => 'nnu', 'Nn1g03493' => 'nnu', 'Nn1g03494' => 'nnu', 'Nn1g07164' => 'nnu', 'Nn1g07291' => 'nnu', 'Nn2g10655' => 'nnu', 'Nn2g11652' => 'nnu', 'Nn2g14008' => 'nnu', 'Nn3g17476' => 'nnu', 'Nn3g17477' => 'nnu', 'Nn4g22370' => 'nnu', 'Nn4g25255' => 'nnu', 'Nn5g27755' => 'nnu', 'Nn6g34260' => 'nnu', 'Nn6g35041' => 'nnu', 'Oeu005924.1' => 'oeu', 'Oeu008383.1' => 'oeu', 'Oeu014928.1' => 'oeu', 'Oeu019889.1' => 'oeu', 'Oeu022271.1' => 'oeu', 'Oeu025271.1' => 'oeu', 'Oeu036302.1' => 'oeu', 'Oeu044100.1' => 'oeu', 'Os01g0528300' => 'osa', 'Os03g0286200' => 'osa', 'Os04g0406600' => 'osa', 'Os07g0512000' => 'osa', 'Os07g0694600' => 'osa', 'Os08g0411000' => 'osa', 'Os09g0565700' => 'osa', 'Os09g0566050' => 'osa', 'Os10g0523700' => 'osa', 'Peaxi162Scf00002g00514' => 'pax', 'Peaxi162Scf00047g01817' => 'pax', 'Peaxi162Scf00114g00001' => 'pax', 'Peaxi162Scf00147g00613' => 'pax', 'Peaxi162Scf00389g00425' => 'pax', 'PGR042G1139' => 'pgr', 'PGR042G3273' => 'pgr', 'PGR102G2180' => 'pgr', 'PGR119G0234' => 'pgr', 'PGR119G0668' => 'pgr', 'PGSC0003DMG400007122' => 'stu', 'PGSC0003DMG400016478' => 'stu', 'PGSC0003DMG400025374' => 'stu', 'PGSC0003DMG400026536' => 'stu', 'Phvul.003G079600' => 'pvu', 'Phvul.005G115600' => 'pvu', 'Phvul.005G127100' => 'pvu', 'Phvul.006G149500' => 'pvu', 'Phvul.006G149600' => 'pvu', 'Phvul.011G071800' => 'pvu', 'Phvul.011G090400' => 'pvu', 'Potri.004G013400' => 'ptr', 'Potri.004G188100' => 'ptr', 'Potri.008G195500' => 'ptr', 'Potri.009G148800' => 'ptr', 'Potri.011G004700' => 'ptr', 'Pp3c17_22810' => 'ppa', 'Pp3c18_4480' => 'ppa', 'Pp3c19_13030' => 'ppa', 'Pp3c1_33620' => 'ppa', 'Pp3c2_9380' => 'ppa', 'PRCOL_00001023' => 'pco', 'Prupe.3G216300' => 'ppe', 'Prupe.4G019500' => 'ppe', 'Prupe.6G092500' => 'ppe', 'Prupe.6G119200' => 'ppe', 'Psat0s1945g0080' => 'psa', 'Psat0s4167g0040' => 'psa', 'Psat1g185800' => 'psa', 'Psat4g006440' => 'psa', 'Psat4g006480' => 'psa', 'Psat4g168120' => 'psa', 'Psat5g255680' => 'psa', 'Psat5g261760' => 'psa', 'Psat7g222120' => 'psa', 'PSO063G7252' => 'pso', 'PSO170G4778' => 'pso', 'PSO210G2249' => 'pso', 'PSO339G2411' => 'pso', 'PSO339G2457' => 'pso', 'PSO339G2854' => 'pso', 'PSO339G4288' => 'pso', 'PSO339G4615' => 'pso', 'PSO384G2796' => 'pso', 'PSO384G2940' => 'pso', 'PSO384G4227' => 'pso', 'PSO478G1425' => 'pso', 'PSO541G3863' => 'pso', 'PSO675G0507' => 'pso', 'PSO782G0338' => 'pso', 'PSO832G0644' => 'pso', 'QL01p013664' => 'qlo', 'QL01p036598' => 'qlo', 'QL05p072984' => 'qlo', 'QL08p005768' => 'qlo', 'QL08p032743' => 'qlo', 'QL93p0073_0439' => 'qlo', 'QL93p0073_0444' => 'qlo', 'RcHm_v2.0_Chr5g0002851' => 'rch', 'RcHm_v2.0_Chr5g0055201' => 'rch', 'RcHm_v2.0_Chr5g0061191' => 'rch', 'RcHm_v2.0_Chr7g0203231' => 'rch', 'Rhsim01G0208100' => 'rsi', 'Rhsim01G0208200' => 'rsi', 'Rhsim02G0106500' => 'rsi', 'Rhsim03G0107900' => 'rsi', 'Rhsim06G0163400' => 'rsi', 'Rhsim13G0105200' => 'rsi', 'Sabra04G0006300' => 'sbr', 'Sabra04G0127000' => 'sbr', 'Sabra08G0148700' => 'sbr', 'Sabra09G0117400' => 'sbr', 'SalBow1G3326' => 'sbo', 'SalBow3G3228' => 'sbo', 'SalBow6G1634' => 'sbo', 'SalBow6G3603' => 'sbo', 'SalBow6G5266' => 'sbo', 'SalBow7G2265' => 'sbo', 'SalBow8G0850' => 'sbo', 'SalBow8G2592' => 'sbo', 'Sc05g0009240' => 'sci', 'Sc12g0002300' => 'sci', 'Sc21g0000100' => 'sci', 'Sc21g0004720' => 'sci', 'Sed0002949' => 'sed', 'Sed0004114' => 'sed', 'Sed0004306' => 'sed', 'Sed0006172' => 'sed', 'Sed0008413' => 'sed', 'Sed0013809' => 'sed', 'Sed0019556' => 'sed', 'SEGI_03570' => 'sgi', 'SEGI_07859' => 'sgi', 'SEGI_15042' => 'sgi', 'SEGI_16263' => 'sgi', 'SEGI_16552' => 'sgi', 'SEGI_24331' => 'sgi', 'SEGI_27316' => 'sgi', 'SEGI_29521' => 'sgi', 'SEGI_41342' => 'sgi', 'SGA_v2.0_scaffold27G11617' => 'sas', 'SGA_v2.0_scaffold316G48428' => 'sas', 'SGA_v2.0_scaffold49G18261' => 'sas', 'SGA_v2.0_scaffold7G03831' => 'sas', 'SGA_v2.0_scaffold93G28359' => 'sas', 'SHI02210' => 'shi', 'SHI06028' => 'shi', 'SHI06321' => 'shi', 'SMO111G0012' => 'smo', 'SMO228G0080' => 'smo', 'SMO356G0756' => 'smo', 'Solyc02g080620.3' => 'sly', 'Solyc06g074530.1' => 'sly', 'Solyc11g066890.1' => 'sly', 'Solyc11g072520.3' => 'sly', 'Sopen02g025330' => 'spe', 'Sopen06g031000' => 'spe', 'Sopen09g008240' => 'spe', 'Sopen09g025210' => 'spe', 'Sopen11g026600' => 'spe', 'Sopen11g030170' => 'spe', 'Sp1g10420' => 'spa', 'Sp3g06570' => 'spa', 'Sp4g10660' => 'spa', 'Sp5g16460' => 'spa', 'Sp6g22710' => 'spa', 'TAR365G0112' => 'tar', 'TAR369G0717' => 'tar', 'TAR374G0976' => 'tar', 'TAR623G1128' => 'tar', 'TAR626G1937' => 'tar', 'TAR627G0123' => 'tar', 'TAR628G0305' => 'tar', 'TAR636G1176' => 'tar', 'TAR636G2442' => 'tar', 'THA.LOC104800556' => 'tha', 'THA.LOC104809501' => 'tha', 'THA.LOC104815126' => 'tha', 'THA.LOC104815732' => 'tha', 'THA.LOC104823528' => 'tha', 'Thecc.02G365600' => 'tca', 'Thecc.06G222300' => 'tca', 'Thecc.09G261800' => 'tca', 'Thecc.09G291400' => 'tca', 'Thhalv10003028m.g' => 'esa', 'Thhalv10007886m.g' => 'esa', 'Thhalv10016085m.g' => 'esa', 'Thhalv10016681m.g' => 'esa', 'Thhalv10020951m.g' => 'esa', 'TPR.G15598' => 'tpr', 'TPR.G29305' => 'tpr', 'TPR.G32395' => 'tpr', 'TPR.G36998' => 'tpr', 'TPR.G4227' => 'tpr', 'TWI18G1433' => 'twi', 'TWI31G0755' => 'twi', 'TWI38G0912' => 'twi', 'TWI75G1097' => 'twi', 'TWI75G1619' => 'twi', 'TWI79G1336' => 'twi', 'unitig_0.g943' => 'ugi', 'unitig_0.g944' => 'ugi', 'unitig_22.g6646' => 'ugi', 'unitig_37.g12681' => 'ugi', 'unitig_8.g3290' => 'ugi', 'vmacro03278' => 'vma', 'vmacro12197' => 'vma', 'vmacro14478' => 'vma', 'vmacro15787' => 'vma', 'vmacro15789' => 'vma', 'vmacro15790' => 'vma', 'vmacro15806' => 'vma', 'vmacro22907' => 'vma', 'vmacro22908' => 'vma', 'vmacro22909' => 'vma', 'vmacro23108' => 'vma', 'VMungo0540G0540' => 'vmu', 'VMungo0540G2468' => 'vmu', 'VMungo1080G0390' => 'vmu', 'VMungo1080G1165' => 'vmu', 'VMungo1127G0170' => 'vmu', 'VMungo1127G2099' => 'vmu', 'VMungo1215G3013' => 'vmu', 'Zm00001eb013110' => 'zma', 'Zm00001eb084260' => 'zma', 'Zm00001eb096110' => 'zma', 'Zm00001eb217510' => 'zma', 'Zm00001eb322550' => 'zma', 'Zm00001eb390770' => 'zma', 'Zm00001eb397170' => 'zma', 'Zm00001eb404610' => 'zma', 'Zm00001eb421790' => 'zma' ) $gf_id = 'HOM05D000911' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000911' ) $data_identifier = 'HOM05D000911' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 16, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 5, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 6, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 8, 'nnu' => (int) 16, 'oeu' => (int) 8, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 5, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 16, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421790' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000911', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27780' => 'bna', 'A03p35380' => 'bna', 'A04p21160' => 'bna', 'A05p40570' => 'bna', 'A06p26900' => 'bna', 'A08p33230' => 'bna', 'A09p65960' => 'bna', 'A10p18290' => 'bna', 'Aa31LG1G12990' => 'aar', 'Aa31LG1G2980' => 'aar', 'Aa31LG4G14320' => 'aar', 'Aa31LG7G11800' => 'aar', 'Aa31sc36G50' => 'aar', 'Aa31sc36G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3721' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5459' => 'aag', 'Actinidia03028' => 'ach', 'Actinidia03753' => 'ach', 'Actinidia04187' => 'ach', 'Actinidia05509' => 'ach', 'Actinidia24180' => 'ach', 'Actinidia26906' => 'ach', 'Actinidia37097' => 'ach', 'Actinidia38249' => 'ach', 'Ah.01g003470' => 'amhyb', 'Ah.01g004580' => 'amhyb', 'Ah.01g014850' => 'amhyb', 'Ah.01g016830' => 'amhyb', 'Ah.14g088000' => 'amhyb', 'AL1G22980' => 'aly', 'AL3G18990' => 'aly', 'AL4G22440' => 'aly', 'AL4G33180' => 'aly', 'AL5G22920' => 'aly', 'AL6G33660' => 'aly', 'AL8G20720' => 'aly', 'Aqoxy1G00935' => 'aox', 'Aqoxy1G02094' => 'aox', 'Aqoxy2G01239' => 'aox', 'Aqoxy4G01870' => 'aox', 'Aqoxy7G00450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.36ZVTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71EM27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5D6C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH3WRE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3NCM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RIM768' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YB5YRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z36GDV' => 'arhy', 'AT1G08250' => 'ath', 'AT1G11790' => 'ath', 'AT2G27820' => 'ath', 'AT3G07630' => 'ath', 'AT3G44720' => 'ath', 'AT5G22630' => 'ath', 'ATR0693G304' => 'atr', 'ATR0794G109' => 'atr', 'ATR0820G120' => 'atr', 'ATR1159G064' => 'atr', 'Atru.chr10.2239' => 'acertr', 'Atru.chr3.3371' => 'acertr', 'Atru.chr6.3202' => 'acertr', 'AUR62006499' => 'cqu', 'AUR62012718' => 'cqu', 'AUR62021938' => 'cqu', 'AUR62023932' => 'cqu', 'AUR62025034' => 'cqu', 'AUR62025035' => 'cqu', 'AUR62038307' => 'cqu', 'AUR62043466' => 'cqu', 'BcaB02g10748' => 'bca', 'BcaB03g13231' => 'bca', 'BcaB03g14689' => 'bca', 'BcaB05g22716' => 'bca', 'BcaB06g28172' => 'bca', 'BcaB08g36413' => 'bca', 'BcaC01g02186' => 'bca', 'BcaC01g04272' => 'bca', 'BcaC02g08080' => 'bca', 'BcaC02g08227' => 'bca', 'BcaC03g13901' => 'bca', 'BcaC04g19593' => 'bca', 'BcaC04g20874' => 'bca', 'BcaC05g29557' => 'bca', 'BcaC06g35505' => 'bca', 'BcaC07g41954' => 'bca', 'BcaC07g41955' => 'bca', 'BcaC07g41956' => 'bca', 'BcaC07g42519' => 'bca', 'BcaC07g42520' => 'bca', 'BcaC07g42523' => 'bca', 'BcaC07g42524' => 'bca', 'BcaC07g42525' => 'bca', 'BcaC08g47480' => 'bca', 'BcaC08g47481' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00530' => 'bna', 'BolC2t07178H' => 'bol', 'BolC3t16567H' => 'bol', 'BolC4t27234H' => 'bol', 'BolC5t29728H' => 'bol', 'BolC5t34622H' => 'bol', 'BolC6t40321H' => 'bol', 'BolC7t42028H' => 'bol', 'BolC8t49125H' => 'bol', 'BolC8t52538H' => 'bol', 'BolC8t52539H' => 'bol', 'BolC9t56681H' => 'bol', 'BolC9t58266H' => 'bol', 'BolSC21t60294H' => 'bol', 'BraA02t05670Z' => 'bra', 'BraA03t12716Z' => 'bra', 'BraA04t17685Z' => 'bra', 'BraA05t22788Z' => 'bra', 'BraA06t24032Z' => 'bra', 'BraA06t25625Z' => 'bra', 'BraA07t27930Z' => 'bra', 'BraA08t35242Z' => 'bra', 'BraA09t38609Z' => 'bra', 'BraA10t43905Z' => 'bra', 'C02p11060' => 'bna', 'C03p42990' => 'bna', 'C03p67310' => 'bna', 'C04p56990' => 'bna', 'C04p58660' => 'bna', 'C05p09890' => 'bna', 'C05p59680' => 'bna', 'C06p19830' => 'bna', 'C06p53040' => 'bna', 'C07p15230' => 'bna', 'C08p50070' => 'bna', 'C08p50090' => 'bna', 'C09p38330' => 'bna', 'C09p53940' => 'bna', 'CAN.G1014.1' => 'can', 'CAN.G644.30' => 'can', 'CAN.G84.47' => 'can', 'CAN.G919.8' => 'can', 'CANSAT54G0113' => 'cansat', 'CANSAT54G1286' => 'cansat', 'CANSAT64G1020' => 'cansat', 'CARHR008080' => 'chi', 'CARHR008090' => 'chi', 'CARHR012130' => 'chi', 'CARHR038390' => 'chi', 'CARHR082330' => 'chi', 'CARHR120520' => 'chi', 'CARHR151470' => 'chi', 'CARHR190950' => 'chi', 'Carub.0001s0760' => 'cru', 'Carub.0001s1146' => 'cru', 'Carub.0003s0721' => 'cru', 'Carub.0004s0858' => 'cru', 'Carub.0005s1040' => 'cru', 'Carub.0006s2035' => 'cru', 'Carub.0015s0005' => 'cru', 'Ca_01607_v3' => 'car', 'Ca_01677_v3' => 'car', 'Ca_06087_v3' => 'car', 'Ca_19238_v3' => 'car', 'Ca_19373_v3' => 'car', 'Ca_21079_v3' => 'car', 'CBR_g54016' => 'cbr', 'CBR_g54018' => 'cbr', 'CBR_g54020' => 'cbr', 'Cc01_g09780' => 'ccan', 'Cc01_g11680' => 'ccan', 'Cc02_g15610' => 'ccan', 'Cc05_g04350' => 'ccan', 'Cc09_g01580' => 'ccan', 'CDE01G0795' => 'cde', 'CDE02G2024' => 'cde', 'CDE02G2260' => 'cde', 'CDE02G4561' => 'cde', 'CDE05G2733' => 'cde', 'CDE05G3422' => 'cde', 'CDE06G2003' => 'cde', 'CDE08G0576' => 'cde', 'CDE09G0048' => 'cde', 'CDE11G0805' => 'cde', 'Cfa003644' => 'cfa', 'Cfa006290' => 'cfa', 'Cfa010080' => 'cfa', 'Cfa011376' => 'cfa', 'Cfa011576' => 'cfa', 'Cfa011577' => 'cfa', 'Cfa014389' => 'cfa', 'Ciclev10006044m.g' => 'ccl', 'Ciclev10006954m.g' => 'ccl', 'Ciclev10015131m.g' => 'ccl', 'Ciclev10015580m.g' => 'ccl', 'Ciclev10028359m.g' => 'ccl', 'Ciclev10028573m.g' => 'ccl', 'CiPaw.03G159300' => 'cil', 'CiPaw.04G115100' => 'cil', 'CiPaw.09G092800' => 'cil', 'CiPaw.10G071800' => 'cil', 'CiPaw.13G105800' => 'cil', 'CiPaw.13G141000' => 'cil', 'CiPaw.14G103400' => 'cil', 'ClCG01G012700' => 'cla', 'ClCG01G012720' => 'cla', 'ClCG01G021920' => 'cla', 'ClCG02G008870' => 'cla', 'ClCG02G020840' => 'cla', 'ClCG02G021930' => 'cla', 'COL.COLO4_19302' => 'col', 'COL.COLO4_25262' => 'col', 'COL.COLO4_31788' => 'col', 'Cpa.g.c34684' => 'cpa', 'Cpa.g.c36520.1' => 'cpa', 'Cpa.g.c45626' => 'cpa', 'Cpa.g.sc121.17' => 'cpa', 'Cpa.g.sc13.22' => 'cpa', 'Cpa.g.sc87.88' => 'cpa', 'Cre06.g261800' => 'cre', 'CsaV3_1G014500' => 'csa', 'CsaV3_1G014510' => 'csa', 'CsaV3_2G034880' => 'csa', 'CsaV3_6G014760' => 'csa', 'CsaV3_6G021500' => 'csa', 'CsaV3_6G048980' => 'csa', 'CSS0002511' => 'camsi', 'CSS0007556' => 'camsi', 'CSS0008532' => 'camsi', 'CSS0009709' => 'camsi', 'CSS0010486' => 'camsi', 'CSS0016768' => 'camsi', 'CSS0023512' => 'camsi', 'CSS0025341' => 'camsi', 'CSS0027999' => 'camsi', 'CSS0028944' => 'camsi', 'CSS0032292' => 'camsi', 'CSS0032464' => 'camsi', 'CSS0037153' => 'camsi', 'CSS0039256' => 'camsi', 'CSS0048392' => 'camsi', 'CSS0050458' => 'camsi', 'DCAR_004224' => 'dca', 'DCAR_006147' => 'dca', 'DCAR_006465' => 'dca', 'DCAR_008159' => 'dca', 'DCAR_012164' => 'dca', 'DCAR_019764' => 'dca', 'Dinv05418' => 'din', 'Dinv10839' => 'din', 'Dinv12521' => 'din', 'Dinv13900' => 'din', 'Dinv29426' => 'din', 'Duzib150G0263' => 'dzi', 'Duzib168G1178' => 'dzi', 'Duzib168G1924' => 'dzi', 'Duzib170G0299' => 'dzi', 'Duzib170G0813' => 'dzi', 'Duzib235G1128' => 'dzi', 'Duzib248G1060' => 'dzi', 'ECA232G1910' => 'eca', 'ECA233G4621' => 'eca', 'ECA238G1216' => 'eca', 'ECA238G1784' => 'eca', 'ECA248G1242' => 'eca', 'EL10Ac8g20071' => 'bvu', 'EL10Ac9g21086' => 'bvu', 'EL10Ac9g22407' => 'bvu', 'EL10Ac9g22412' => 'bvu', 'Eucgr.A01119' => 'egr', 'Eucgr.E04043' => 'egr', 'Eucgr.J00428' => 'egr', 'Eucgr.J00958' => 'egr', 'FAN11G3091' => 'fan', 'FAN11G3651' => 'fan', 'FAN16G2566' => 'fan', 'FAN21G3155' => 'fan', 'FAN21G3400' => 'fan', 'FAN21G3543' => 'fan', 'FAN25G0234' => 'fan', 'FAN25G1422' => 'fan', 'FAN25G3392' => 'fan', 'FvH4_3g01940' => 'fve', 'FvH4_3g29870' => 'fve', 'FvH4_3g33680' => 'fve', 'Glyma.09G004200' => 'gma', 'Glyma.11G151288' => 'gma', 'Glyma.11G189100' => 'gma', 'Glyma.12G072500' => 'gma', 'Glyma.12G085500' => 'gma', 'Glyma.12G181800' => 'gma', 'Glyma.12G193000' => 'gma', 'Glyma.13G309300' => 'gma', 'Glyma.13G319000' => 'gma', 'Glyma.17G012600' => 'gma', 'Gohir.A06G148600' => 'ghi', 'Gohir.A07G115800' => 'ghi', 'Gohir.A08G003600' => 'ghi', 'Gohir.A09G093300' => 'ghi', 'Gohir.A09G105400' => 'ghi', 'Gohir.A09G105500' => 'ghi', 'Gohir.D06G154600' => 'ghi', 'Gohir.D07G120200' => 'ghi', 'Gohir.D08G013900' => 'ghi', 'Gohir.D09G093100' => 'ghi', 'Gohir.D09G102200' => 'ghi', 'Gohir.D09G102300' => 'ghi', 'Gorai.001G129400' => 'gra', 'Gorai.004G008200' => 'gra', 'Gorai.006G109800' => 'gra', 'Gorai.006G119500' => 'gra', 'Gorai.006G121300' => 'gra', 'Gorai.010G180700' => 'gra', 'GSVIVG01012716001' => 'vvi', 'GSVIVG01025118001' => 'vvi', 'GSVIVG01030439001' => 'vvi', 'GSVIVG01031397001' => 'vvi', 'HanXRQChr01g0004201' => 'han', 'HanXRQChr02g0054941' => 'han', 'HanXRQChr05g0141811' => 'han', 'HanXRQChr07g0197751' => 'han', 'HanXRQChr11g0346691' => 'han', 'HanXRQChr13g0396971' => 'han', 'HanXRQChr14g0432951' => 'han', 'HanXRQChr14g0452001' => 'han', 'HanXRQChr15g0496681' => 'han', 'HanXRQChr17g0557491' => 'han', 'HanXRQChr17g0557501' => 'han', 'Haze_06809' => 'cav', 'Haze_12852' => 'cav', 'Haze_15850' => 'cav', 'Haze_23446' => 'cav', 'Haze_23942' => 'cav', 'Haze_23943' => 'cav', 'Hma1.2p1_0091F.1_g046450' => 'hma', 'Hma1.2p1_0128F.1_g059910' => 'hma', 'Hma1.2p1_0249F.1_g102260' => 'hma', 'Hma1.2p1_0453F.1_g156190' => 'hma', 'Hma1.2p1_0695F.1_g204380' => 'hma', 'Hma1.2p1_0749F.1_g212650' => 'hma', 'Hma1.2p1_2156F.1_g315420' => 'hma', 'Hma1.2p1_2686F.1_g326940' => 'hma', 'HPP92_006428' => 'vpl', 'HPP92_012069' => 'vpl', 'HPP92_014129' => 'vpl', 'HPP92_014133' => 'vpl', 'HPP92_017315' => 'vpl', 'HPP92_026445' => 'vpl', 'HPP92_026446' => 'vpl', 'Hund00774' => 'sun', 'Hund07682' => 'sun', 'Hund21413' => 'sun', 'Hund23462' => 'sun', 'Hund23463' => 'sun', 'Lalb_Chr03g0027911' => 'lal', 'Lalb_Chr13g0304271' => 'lal', 'Lalb_Chr19g0137471' => 'lal', 'Lalb_Chr22g0350651' => 'lal', 'Lalb_Chr24g0395151' => 'lal', 'Lj1A1231T40' => 'lonja', 'Lj1A221T48' => 'lonja', 'Lj1C924T12' => 'lonja', 'Lj2C993G6' => 'lonja', 'Lj3g0005790' => 'lja', 'Lj3g0015432' => 'lja', 'Lj3g0017722' => 'lja', 'Lj3g0018497' => 'lja', 'Lj4g0025071' => 'lja', 'Lsat_1_v5_gn_1_129680' => 'lsa', 'Lsat_1_v5_gn_2_25321' => 'lsa', 'Lsat_1_v5_gn_2_95461' => 'lsa', 'Lsat_1_v5_gn_4_159620' => 'lsa', 'Lsat_1_v5_gn_6_41301' => 'lsa', 'Lsat_1_v5_gn_6_74660' => 'lsa', 'Lsat_1_v5_gn_7_11520' => 'lsa', 'Lsat_1_v5_gn_9_67680' => 'lsa', 'Manes.04G008300' => 'mes', 'Manes.04G008400' => 'mes', 'Manes.04G026500' => 'mes', 'Manes.10G135300' => 'mes', 'Manes.11G157300' => 'mes', 'Manes.12G074000' => 'mes', 'Manes.16G006200' => 'mes', 'Manes.17G026400' => 'mes', 'Mapoly0024s0086' => 'mpo', 'Mapoly0024s0087' => 'mpo', 'Mapoly0071s0057' => 'mpo', 'Mapoly0204s0012' => 'mpo', 'MBI04_g37681_MAGBIO' => 'mbi', 'MBI05_g17779_MAGBIO' => 'mbi', 'MBI12_g31184_MAGBIO' => 'mbi', 'MBI17_g11083_MAGBIO' => 'mbi', 'MBI18_g03883_MAGBIO' => 'mbi', 'MBI18_g28940_MAGBIO' => 'mbi', 'MCO01G690' => 'mco', 'MD03G1109900' => 'mdo', 'MD03G1134800' => 'mdo', 'MD05G1348000' => 'mdo', 'MD10G1322400' => 'mdo', 'MD11G1123300' => 'mdo', 'MD11G1157600' => 'mdo', 'Medtr2g084875' => 'mtr', 'Medtr2g088130' => 'mtr', 'Medtr4g055310' => 'mtr', 'Medtr4g061070' => 'mtr', 'Medtr4g132250' => 'mtr', 'MELO3C004795.2' => 'cme', 'MELO3C004797.2' => 'cme', 'MELO3C007396.2' => 'cme', 'MELO3C019277.2' => 'cme', 'MELO3C021449.2' => 'cme', 'MELO3C025736.2' => 'cme', 'Migut.D02175' => 'egut', 'Migut.H01573' => 'egut', 'Migut.M01327' => 'egut', 'Migut.N02513' => 'egut', 'MSTRG.14638' => 'ama', 'MSTRG.18632' => 'ama', 'MSTRG.7203' => 'ama', 'Nitab4.5_0000533g0140' => 'nta', 'Nitab4.5_0000888g0150' => 'nta', 'Nitab4.5_0001453g0040' => 'nta', 'Nitab4.5_0002827g0090' => 'nta', 'Nitab4.5_0003082g0040' => 'nta', 'Nitab4.5_0007799g0040' => 'nta', 'Nitab4.5_0008983g0010' => 'nta', 'Nitab4.5_0009017g0020' => 'nta', 'Nn1g02132' => 'nnu', 'Nn1g03492' => 'nnu', 'Nn1g03493' => 'nnu', 'Nn1g03494' => 'nnu', 'Nn1g07164' => 'nnu', 'Nn1g07291' => 'nnu', 'Nn2g10655' => 'nnu', 'Nn2g11652' => 'nnu', 'Nn2g14008' => 'nnu', 'Nn3g17476' => 'nnu', 'Nn3g17477' => 'nnu', 'Nn4g22370' => 'nnu', 'Nn4g25255' => 'nnu', 'Nn5g27755' => 'nnu', 'Nn6g34260' => 'nnu', 'Nn6g35041' => 'nnu', 'Oeu005924.1' => 'oeu', 'Oeu008383.1' => 'oeu', 'Oeu014928.1' => 'oeu', 'Oeu019889.1' => 'oeu', 'Oeu022271.1' => 'oeu', 'Oeu025271.1' => 'oeu', 'Oeu036302.1' => 'oeu', 'Oeu044100.1' => 'oeu', 'Os01g0528300' => 'osa', 'Os03g0286200' => 'osa', 'Os04g0406600' => 'osa', 'Os07g0512000' => 'osa', 'Os07g0694600' => 'osa', 'Os08g0411000' => 'osa', 'Os09g0565700' => 'osa', 'Os09g0566050' => 'osa', 'Os10g0523700' => 'osa', 'Peaxi162Scf00002g00514' => 'pax', 'Peaxi162Scf00047g01817' => 'pax', 'Peaxi162Scf00114g00001' => 'pax', 'Peaxi162Scf00147g00613' => 'pax', 'Peaxi162Scf00389g00425' => 'pax', 'PGR042G1139' => 'pgr', 'PGR042G3273' => 'pgr', 'PGR102G2180' => 'pgr', 'PGR119G0234' => 'pgr', 'PGR119G0668' => 'pgr', 'PGSC0003DMG400007122' => 'stu', 'PGSC0003DMG400016478' => 'stu', 'PGSC0003DMG400025374' => 'stu', 'PGSC0003DMG400026536' => 'stu', 'Phvul.003G079600' => 'pvu', 'Phvul.005G115600' => 'pvu', 'Phvul.005G127100' => 'pvu', 'Phvul.006G149500' => 'pvu', 'Phvul.006G149600' => 'pvu', 'Phvul.011G071800' => 'pvu', 'Phvul.011G090400' => 'pvu', 'Potri.004G013400' => 'ptr', 'Potri.004G188100' => 'ptr', 'Potri.008G195500' => 'ptr', 'Potri.009G148800' => 'ptr', 'Potri.011G004700' => 'ptr', 'Pp3c17_22810' => 'ppa', 'Pp3c18_4480' => 'ppa', 'Pp3c19_13030' => 'ppa', 'Pp3c1_33620' => 'ppa', 'Pp3c2_9380' => 'ppa', 'PRCOL_00001023' => 'pco', 'Prupe.3G216300' => 'ppe', 'Prupe.4G019500' => 'ppe', 'Prupe.6G092500' => 'ppe', 'Prupe.6G119200' => 'ppe', 'Psat0s1945g0080' => 'psa', 'Psat0s4167g0040' => 'psa', 'Psat1g185800' => 'psa', 'Psat4g006440' => 'psa', 'Psat4g006480' => 'psa', 'Psat4g168120' => 'psa', 'Psat5g255680' => 'psa', 'Psat5g261760' => 'psa', 'Psat7g222120' => 'psa', 'PSO063G7252' => 'pso', 'PSO170G4778' => 'pso', 'PSO210G2249' => 'pso', 'PSO339G2411' => 'pso', 'PSO339G2457' => 'pso', 'PSO339G2854' => 'pso', 'PSO339G4288' => 'pso', 'PSO339G4615' => 'pso', 'PSO384G2796' => 'pso', 'PSO384G2940' => 'pso', 'PSO384G4227' => 'pso', 'PSO478G1425' => 'pso', 'PSO541G3863' => 'pso', 'PSO675G0507' => 'pso', 'PSO782G0338' => 'pso', 'PSO832G0644' => 'pso', 'QL01p013664' => 'qlo', 'QL01p036598' => 'qlo', 'QL05p072984' => 'qlo', 'QL08p005768' => 'qlo', 'QL08p032743' => 'qlo', 'QL93p0073_0439' => 'qlo', 'QL93p0073_0444' => 'qlo', 'RcHm_v2.0_Chr5g0002851' => 'rch', 'RcHm_v2.0_Chr5g0055201' => 'rch', 'RcHm_v2.0_Chr5g0061191' => 'rch', 'RcHm_v2.0_Chr7g0203231' => 'rch', 'Rhsim01G0208100' => 'rsi', 'Rhsim01G0208200' => 'rsi', 'Rhsim02G0106500' => 'rsi', 'Rhsim03G0107900' => 'rsi', 'Rhsim06G0163400' => 'rsi', 'Rhsim13G0105200' => 'rsi', 'Sabra04G0006300' => 'sbr', 'Sabra04G0127000' => 'sbr', 'Sabra08G0148700' => 'sbr', 'Sabra09G0117400' => 'sbr', 'SalBow1G3326' => 'sbo', 'SalBow3G3228' => 'sbo', 'SalBow6G1634' => 'sbo', 'SalBow6G3603' => 'sbo', 'SalBow6G5266' => 'sbo', 'SalBow7G2265' => 'sbo', 'SalBow8G0850' => 'sbo', 'SalBow8G2592' => 'sbo', 'Sc05g0009240' => 'sci', 'Sc12g0002300' => 'sci', 'Sc21g0000100' => 'sci', 'Sc21g0004720' => 'sci', 'Sed0002949' => 'sed', 'Sed0004114' => 'sed', 'Sed0004306' => 'sed', 'Sed0006172' => 'sed', 'Sed0008413' => 'sed', 'Sed0013809' => 'sed', 'Sed0019556' => 'sed', 'SEGI_03570' => 'sgi', 'SEGI_07859' => 'sgi', 'SEGI_15042' => 'sgi', 'SEGI_16263' => 'sgi', 'SEGI_16552' => 'sgi', 'SEGI_24331' => 'sgi', 'SEGI_27316' => 'sgi', 'SEGI_29521' => 'sgi', 'SEGI_41342' => 'sgi', 'SGA_v2.0_scaffold27G11617' => 'sas', 'SGA_v2.0_scaffold316G48428' => 'sas', 'SGA_v2.0_scaffold49G18261' => 'sas', 'SGA_v2.0_scaffold7G03831' => 'sas', 'SGA_v2.0_scaffold93G28359' => 'sas', 'SHI02210' => 'shi', 'SHI06028' => 'shi', 'SHI06321' => 'shi', 'SMO111G0012' => 'smo', 'SMO228G0080' => 'smo', 'SMO356G0756' => 'smo', 'Solyc02g080620.3' => 'sly', 'Solyc06g074530.1' => 'sly', 'Solyc11g066890.1' => 'sly', 'Solyc11g072520.3' => 'sly', 'Sopen02g025330' => 'spe', 'Sopen06g031000' => 'spe', 'Sopen09g008240' => 'spe', 'Sopen09g025210' => 'spe', 'Sopen11g026600' => 'spe', 'Sopen11g030170' => 'spe', 'Sp1g10420' => 'spa', 'Sp3g06570' => 'spa', 'Sp4g10660' => 'spa', 'Sp5g16460' => 'spa', 'Sp6g22710' => 'spa', 'TAR365G0112' => 'tar', 'TAR369G0717' => 'tar', 'TAR374G0976' => 'tar', 'TAR623G1128' => 'tar', 'TAR626G1937' => 'tar', 'TAR627G0123' => 'tar', 'TAR628G0305' => 'tar', 'TAR636G1176' => 'tar', 'TAR636G2442' => 'tar', 'THA.LOC104800556' => 'tha', 'THA.LOC104809501' => 'tha', 'THA.LOC104815126' => 'tha', 'THA.LOC104815732' => 'tha', 'THA.LOC104823528' => 'tha', 'Thecc.02G365600' => 'tca', 'Thecc.06G222300' => 'tca', 'Thecc.09G261800' => 'tca', 'Thecc.09G291400' => 'tca', 'Thhalv10003028m.g' => 'esa', 'Thhalv10007886m.g' => 'esa', 'Thhalv10016085m.g' => 'esa', 'Thhalv10016681m.g' => 'esa', 'Thhalv10020951m.g' => 'esa', 'TPR.G15598' => 'tpr', 'TPR.G29305' => 'tpr', 'TPR.G32395' => 'tpr', 'TPR.G36998' => 'tpr', 'TPR.G4227' => 'tpr', 'TWI18G1433' => 'twi', 'TWI31G0755' => 'twi', 'TWI38G0912' => 'twi', 'TWI75G1097' => 'twi', 'TWI75G1619' => 'twi', 'TWI79G1336' => 'twi', 'unitig_0.g943' => 'ugi', 'unitig_0.g944' => 'ugi', 'unitig_22.g6646' => 'ugi', 'unitig_37.g12681' => 'ugi', 'unitig_8.g3290' => 'ugi', 'vmacro03278' => 'vma', 'vmacro12197' => 'vma', 'vmacro14478' => 'vma', 'vmacro15787' => 'vma', 'vmacro15789' => 'vma', 'vmacro15790' => 'vma', 'vmacro15806' => 'vma', 'vmacro22907' => 'vma', 'vmacro22908' => 'vma', 'vmacro22909' => 'vma', 'vmacro23108' => 'vma', 'VMungo0540G0540' => 'vmu', 'VMungo0540G2468' => 'vmu', 'VMungo1080G0390' => 'vmu', 'VMungo1080G1165' => 'vmu', 'VMungo1127G0170' => 'vmu', 'VMungo1127G2099' => 'vmu', 'VMungo1215G3013' => 'vmu', 'Zm00001eb013110' => 'zma', 'Zm00001eb084260' => 'zma', 'Zm00001eb096110' => 'zma', 'Zm00001eb217510' => 'zma', 'Zm00001eb322550' => 'zma', 'Zm00001eb390770' => 'zma', 'Zm00001eb397170' => 'zma', 'Zm00001eb404610' => 'zma', 'Zm00001eb421790' => 'zma' ), 'gf_id' => 'HOM05D000911', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000911' ), 'data_identifier' => 'HOM05D000911', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000911', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27780' => 'bna', 'A03p35380' => 'bna', 'A04p21160' => 'bna', 'A05p40570' => 'bna', 'A06p26900' => 'bna', 'A08p33230' => 'bna', 'A09p65960' => 'bna', 'A10p18290' => 'bna', 'Aa31LG1G12990' => 'aar', 'Aa31LG1G2980' => 'aar', 'Aa31LG4G14320' => 'aar', 'Aa31LG7G11800' => 'aar', 'Aa31sc36G50' => 'aar', 'Aa31sc36G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3721' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5459' => 'aag', 'Actinidia03028' => 'ach', 'Actinidia03753' => 'ach', 'Actinidia04187' => 'ach', 'Actinidia05509' => 'ach', 'Actinidia24180' => 'ach', 'Actinidia26906' => 'ach', 'Actinidia37097' => 'ach', 'Actinidia38249' => 'ach', 'Ah.01g003470' => 'amhyb', 'Ah.01g004580' => 'amhyb', 'Ah.01g014850' => 'amhyb', 'Ah.01g016830' => 'amhyb', 'Ah.14g088000' => 'amhyb', 'AL1G22980' => 'aly', 'AL3G18990' => 'aly', 'AL4G22440' => 'aly', 'AL4G33180' => 'aly', 'AL5G22920' => 'aly', 'AL6G33660' => 'aly', 'AL8G20720' => 'aly', 'Aqoxy1G00935' => 'aox', 'Aqoxy1G02094' => 'aox', 'Aqoxy2G01239' => 'aox', 'Aqoxy4G01870' => 'aox', 'Aqoxy7G00450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.36ZVTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71EM27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5D6C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH3WRE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3NCM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RIM768' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YB5YRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z36GDV' => 'arhy', 'AT1G08250' => 'ath', 'AT1G11790' => 'ath', 'AT2G27820' => 'ath', 'AT3G07630' => 'ath', 'AT3G44720' => 'ath', 'AT5G22630' => 'ath', 'ATR0693G304' => 'atr', 'ATR0794G109' => 'atr', 'ATR0820G120' => 'atr', 'ATR1159G064' => 'atr', 'Atru.chr10.2239' => 'acertr', 'Atru.chr3.3371' => 'acertr', 'Atru.chr6.3202' => 'acertr', 'AUR62006499' => 'cqu', 'AUR62012718' => 'cqu', 'AUR62021938' => 'cqu', 'AUR62023932' => 'cqu', 'AUR62025034' => 'cqu', 'AUR62025035' => 'cqu', 'AUR62038307' => 'cqu', 'AUR62043466' => 'cqu', 'BcaB02g10748' => 'bca', 'BcaB03g13231' => 'bca', 'BcaB03g14689' => 'bca', 'BcaB05g22716' => 'bca', 'BcaB06g28172' => 'bca', 'BcaB08g36413' => 'bca', 'BcaC01g02186' => 'bca', 'BcaC01g04272' => 'bca', 'BcaC02g08080' => 'bca', 'BcaC02g08227' => 'bca', 'BcaC03g13901' => 'bca', 'BcaC04g19593' => 'bca', 'BcaC04g20874' => 'bca', 'BcaC05g29557' => 'bca', 'BcaC06g35505' => 'bca', 'BcaC07g41954' => 'bca', 'BcaC07g41955' => 'bca', 'BcaC07g41956' => 'bca', 'BcaC07g42519' => 'bca', 'BcaC07g42520' => 'bca', 'BcaC07g42523' => 'bca', 'BcaC07g42524' => 'bca', 'BcaC07g42525' => 'bca', 'BcaC08g47480' => 'bca', 'BcaC08g47481' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00530' => 'bna', 'BolC2t07178H' => 'bol', 'BolC3t16567H' => 'bol', 'BolC4t27234H' => 'bol', 'BolC5t29728H' => 'bol', 'BolC5t34622H' => 'bol', 'BolC6t40321H' => 'bol', 'BolC7t42028H' => 'bol', 'BolC8t49125H' => 'bol', 'BolC8t52538H' => 'bol', 'BolC8t52539H' => 'bol', 'BolC9t56681H' => 'bol', 'BolC9t58266H' => 'bol', 'BolSC21t60294H' => 'bol', 'BraA02t05670Z' => 'bra', 'BraA03t12716Z' => 'bra', 'BraA04t17685Z' => 'bra', 'BraA05t22788Z' => 'bra', 'BraA06t24032Z' => 'bra', 'BraA06t25625Z' => 'bra', 'BraA07t27930Z' => 'bra', 'BraA08t35242Z' => 'bra', 'BraA09t38609Z' => 'bra', 'BraA10t43905Z' => 'bra', 'C02p11060' => 'bna', 'C03p42990' => 'bna', 'C03p67310' => 'bna', 'C04p56990' => 'bna', 'C04p58660' => 'bna', 'C05p09890' => 'bna', 'C05p59680' => 'bna', 'C06p19830' => 'bna', 'C06p53040' => 'bna', 'C07p15230' => 'bna', 'C08p50070' => 'bna', 'C08p50090' => 'bna', 'C09p38330' => 'bna', 'C09p53940' => 'bna', 'CAN.G1014.1' => 'can', 'CAN.G644.30' => 'can', 'CAN.G84.47' => 'can', 'CAN.G919.8' => 'can', 'CANSAT54G0113' => 'cansat', 'CANSAT54G1286' => 'cansat', 'CANSAT64G1020' => 'cansat', 'CARHR008080' => 'chi', 'CARHR008090' => 'chi', 'CARHR012130' => 'chi', 'CARHR038390' => 'chi', 'CARHR082330' => 'chi', 'CARHR120520' => 'chi', 'CARHR151470' => 'chi', 'CARHR190950' => 'chi', 'Carub.0001s0760' => 'cru', 'Carub.0001s1146' => 'cru', 'Carub.0003s0721' => 'cru', 'Carub.0004s0858' => 'cru', 'Carub.0005s1040' => 'cru', 'Carub.0006s2035' => 'cru', 'Carub.0015s0005' => 'cru', 'Ca_01607_v3' => 'car', 'Ca_01677_v3' => 'car', 'Ca_06087_v3' => 'car', 'Ca_19238_v3' => 'car', 'Ca_19373_v3' => 'car', 'Ca_21079_v3' => 'car', 'CBR_g54016' => 'cbr', 'CBR_g54018' => 'cbr', 'CBR_g54020' => 'cbr', 'Cc01_g09780' => 'ccan', 'Cc01_g11680' => 'ccan', 'Cc02_g15610' => 'ccan', 'Cc05_g04350' => 'ccan', 'Cc09_g01580' => 'ccan', 'CDE01G0795' => 'cde', 'CDE02G2024' => 'cde', 'CDE02G2260' => 'cde', 'CDE02G4561' => 'cde', 'CDE05G2733' => 'cde', 'CDE05G3422' => 'cde', 'CDE06G2003' => 'cde', 'CDE08G0576' => 'cde', 'CDE09G0048' => 'cde', 'CDE11G0805' => 'cde', 'Cfa003644' => 'cfa', 'Cfa006290' => 'cfa', 'Cfa010080' => 'cfa', 'Cfa011376' => 'cfa', 'Cfa011576' => 'cfa', 'Cfa011577' => 'cfa', 'Cfa014389' => 'cfa', 'Ciclev10006044m.g' => 'ccl', 'Ciclev10006954m.g' => 'ccl', 'Ciclev10015131m.g' => 'ccl', 'Ciclev10015580m.g' => 'ccl', 'Ciclev10028359m.g' => 'ccl', 'Ciclev10028573m.g' => 'ccl', 'CiPaw.03G159300' => 'cil', 'CiPaw.04G115100' => 'cil', 'CiPaw.09G092800' => 'cil', 'CiPaw.10G071800' => 'cil', 'CiPaw.13G105800' => 'cil', 'CiPaw.13G141000' => 'cil', 'CiPaw.14G103400' => 'cil', 'ClCG01G012700' => 'cla', 'ClCG01G012720' => 'cla', 'ClCG01G021920' => 'cla', 'ClCG02G008870' => 'cla', 'ClCG02G020840' => 'cla', 'ClCG02G021930' => 'cla', 'COL.COLO4_19302' => 'col', 'COL.COLO4_25262' => 'col', 'COL.COLO4_31788' => 'col', 'Cpa.g.c34684' => 'cpa', 'Cpa.g.c36520.1' => 'cpa', 'Cpa.g.c45626' => 'cpa', 'Cpa.g.sc121.17' => 'cpa', 'Cpa.g.sc13.22' => 'cpa', 'Cpa.g.sc87.88' => 'cpa', 'Cre06.g261800' => 'cre', 'CsaV3_1G014500' => 'csa', 'CsaV3_1G014510' => 'csa', 'CsaV3_2G034880' => 'csa', 'CsaV3_6G014760' => 'csa', 'CsaV3_6G021500' => 'csa', 'CsaV3_6G048980' => 'csa', 'CSS0002511' => 'camsi', 'CSS0007556' => 'camsi', 'CSS0008532' => 'camsi', 'CSS0009709' => 'camsi', 'CSS0010486' => 'camsi', 'CSS0016768' => 'camsi', 'CSS0023512' => 'camsi', 'CSS0025341' => 'camsi', 'CSS0027999' => 'camsi', 'CSS0028944' => 'camsi', 'CSS0032292' => 'camsi', 'CSS0032464' => 'camsi', 'CSS0037153' => 'camsi', 'CSS0039256' => 'camsi', 'CSS0048392' => 'camsi', 'CSS0050458' => 'camsi', 'DCAR_004224' => 'dca', 'DCAR_006147' => 'dca', 'DCAR_006465' => 'dca', 'DCAR_008159' => 'dca', 'DCAR_012164' => 'dca', 'DCAR_019764' => 'dca', 'Dinv05418' => 'din', 'Dinv10839' => 'din', 'Dinv12521' => 'din', 'Dinv13900' => 'din', 'Dinv29426' => 'din', 'Duzib150G0263' => 'dzi', 'Duzib168G1178' => 'dzi', 'Duzib168G1924' => 'dzi', 'Duzib170G0299' => 'dzi', 'Duzib170G0813' => 'dzi', 'Duzib235G1128' => 'dzi', 'Duzib248G1060' => 'dzi', 'ECA232G1910' => 'eca', 'ECA233G4621' => 'eca', 'ECA238G1216' => 'eca', 'ECA238G1784' => 'eca', 'ECA248G1242' => 'eca', 'EL10Ac8g20071' => 'bvu', 'EL10Ac9g21086' => 'bvu', 'EL10Ac9g22407' => 'bvu', 'EL10Ac9g22412' => 'bvu', 'Eucgr.A01119' => 'egr', 'Eucgr.E04043' => 'egr', 'Eucgr.J00428' => 'egr', 'Eucgr.J00958' => 'egr', 'FAN11G3091' => 'fan', 'FAN11G3651' => 'fan', 'FAN16G2566' => 'fan', 'FAN21G3155' => 'fan', 'FAN21G3400' => 'fan', 'FAN21G3543' => 'fan', 'FAN25G0234' => 'fan', 'FAN25G1422' => 'fan', 'FAN25G3392' => 'fan', 'FvH4_3g01940' => 'fve', 'FvH4_3g29870' => 'fve', 'FvH4_3g33680' => 'fve', 'Glyma.09G004200' => 'gma', 'Glyma.11G151288' => 'gma', 'Glyma.11G189100' => 'gma', 'Glyma.12G072500' => 'gma', 'Glyma.12G085500' => 'gma', 'Glyma.12G181800' => 'gma', 'Glyma.12G193000' => 'gma', 'Glyma.13G309300' => 'gma', 'Glyma.13G319000' => 'gma', 'Glyma.17G012600' => 'gma', 'Gohir.A06G148600' => 'ghi', 'Gohir.A07G115800' => 'ghi', 'Gohir.A08G003600' => 'ghi', 'Gohir.A09G093300' => 'ghi', 'Gohir.A09G105400' => 'ghi', 'Gohir.A09G105500' => 'ghi', 'Gohir.D06G154600' => 'ghi', 'Gohir.D07G120200' => 'ghi', 'Gohir.D08G013900' => 'ghi', 'Gohir.D09G093100' => 'ghi', 'Gohir.D09G102200' => 'ghi', 'Gohir.D09G102300' => 'ghi', 'Gorai.001G129400' => 'gra', 'Gorai.004G008200' => 'gra', 'Gorai.006G109800' => 'gra', 'Gorai.006G119500' => 'gra', 'Gorai.006G121300' => 'gra', 'Gorai.010G180700' => 'gra', 'GSVIVG01012716001' => 'vvi', 'GSVIVG01025118001' => 'vvi', 'GSVIVG01030439001' => 'vvi', 'GSVIVG01031397001' => 'vvi', 'HanXRQChr01g0004201' => 'han', 'HanXRQChr02g0054941' => 'han', 'HanXRQChr05g0141811' => 'han', 'HanXRQChr07g0197751' => 'han', 'HanXRQChr11g0346691' => 'han', 'HanXRQChr13g0396971' => 'han', 'HanXRQChr14g0432951' => 'han', 'HanXRQChr14g0452001' => 'han', 'HanXRQChr15g0496681' => 'han', 'HanXRQChr17g0557491' => 'han', 'HanXRQChr17g0557501' => 'han', 'Haze_06809' => 'cav', 'Haze_12852' => 'cav', 'Haze_15850' => 'cav', 'Haze_23446' => 'cav', 'Haze_23942' => 'cav', 'Haze_23943' => 'cav', 'Hma1.2p1_0091F.1_g046450' => 'hma', 'Hma1.2p1_0128F.1_g059910' => 'hma', 'Hma1.2p1_0249F.1_g102260' => 'hma', 'Hma1.2p1_0453F.1_g156190' => 'hma', 'Hma1.2p1_0695F.1_g204380' => 'hma', 'Hma1.2p1_0749F.1_g212650' => 'hma', 'Hma1.2p1_2156F.1_g315420' => 'hma', 'Hma1.2p1_2686F.1_g326940' => 'hma', 'HPP92_006428' => 'vpl', 'HPP92_012069' => 'vpl', 'HPP92_014129' => 'vpl', 'HPP92_014133' => 'vpl', 'HPP92_017315' => 'vpl', 'HPP92_026445' => 'vpl', 'HPP92_026446' => 'vpl', 'Hund00774' => 'sun', 'Hund07682' => 'sun', 'Hund21413' => 'sun', 'Hund23462' => 'sun', 'Hund23463' => 'sun', 'Lalb_Chr03g0027911' => 'lal', 'Lalb_Chr13g0304271' => 'lal', 'Lalb_Chr19g0137471' => 'lal', 'Lalb_Chr22g0350651' => 'lal', 'Lalb_Chr24g0395151' => 'lal', 'Lj1A1231T40' => 'lonja', 'Lj1A221T48' => 'lonja', 'Lj1C924T12' => 'lonja', 'Lj2C993G6' => 'lonja', 'Lj3g0005790' => 'lja', 'Lj3g0015432' => 'lja', 'Lj3g0017722' => 'lja', 'Lj3g0018497' => 'lja', 'Lj4g0025071' => 'lja', 'Lsat_1_v5_gn_1_129680' => 'lsa', 'Lsat_1_v5_gn_2_25321' => 'lsa', 'Lsat_1_v5_gn_2_95461' => 'lsa', 'Lsat_1_v5_gn_4_159620' => 'lsa', 'Lsat_1_v5_gn_6_41301' => 'lsa', 'Lsat_1_v5_gn_6_74660' => 'lsa', 'Lsat_1_v5_gn_7_11520' => 'lsa', 'Lsat_1_v5_gn_9_67680' => 'lsa', 'Manes.04G008300' => 'mes', 'Manes.04G008400' => 'mes', 'Manes.04G026500' => 'mes', 'Manes.10G135300' => 'mes', 'Manes.11G157300' => 'mes', 'Manes.12G074000' => 'mes', 'Manes.16G006200' => 'mes', 'Manes.17G026400' => 'mes', 'Mapoly0024s0086' => 'mpo', 'Mapoly0024s0087' => 'mpo', 'Mapoly0071s0057' => 'mpo', 'Mapoly0204s0012' => 'mpo', 'MBI04_g37681_MAGBIO' => 'mbi', 'MBI05_g17779_MAGBIO' => 'mbi', 'MBI12_g31184_MAGBIO' => 'mbi', 'MBI17_g11083_MAGBIO' => 'mbi', 'MBI18_g03883_MAGBIO' => 'mbi', 'MBI18_g28940_MAGBIO' => 'mbi', 'MCO01G690' => 'mco', 'MD03G1109900' => 'mdo', 'MD03G1134800' => 'mdo', 'MD05G1348000' => 'mdo', 'MD10G1322400' => 'mdo', 'MD11G1123300' => 'mdo', 'MD11G1157600' => 'mdo', 'Medtr2g084875' => 'mtr', 'Medtr2g088130' => 'mtr', 'Medtr4g055310' => 'mtr', 'Medtr4g061070' => 'mtr', 'Medtr4g132250' => 'mtr', 'MELO3C004795.2' => 'cme', 'MELO3C004797.2' => 'cme', 'MELO3C007396.2' => 'cme', 'MELO3C019277.2' => 'cme', 'MELO3C021449.2' => 'cme', 'MELO3C025736.2' => 'cme', 'Migut.D02175' => 'egut', 'Migut.H01573' => 'egut', 'Migut.M01327' => 'egut', 'Migut.N02513' => 'egut', 'MSTRG.14638' => 'ama', 'MSTRG.18632' => 'ama', 'MSTRG.7203' => 'ama', 'Nitab4.5_0000533g0140' => 'nta', 'Nitab4.5_0000888g0150' => 'nta', 'Nitab4.5_0001453g0040' => 'nta', 'Nitab4.5_0002827g0090' => 'nta', 'Nitab4.5_0003082g0040' => 'nta', 'Nitab4.5_0007799g0040' => 'nta', 'Nitab4.5_0008983g0010' => 'nta', 'Nitab4.5_0009017g0020' => 'nta', 'Nn1g02132' => 'nnu', 'Nn1g03492' => 'nnu', 'Nn1g03493' => 'nnu', 'Nn1g03494' => 'nnu', 'Nn1g07164' => 'nnu', 'Nn1g07291' => 'nnu', 'Nn2g10655' => 'nnu', 'Nn2g11652' => 'nnu', 'Nn2g14008' => 'nnu', 'Nn3g17476' => 'nnu', 'Nn3g17477' => 'nnu', 'Nn4g22370' => 'nnu', 'Nn4g25255' => 'nnu', 'Nn5g27755' => 'nnu', 'Nn6g34260' => 'nnu', 'Nn6g35041' => 'nnu', 'Oeu005924.1' => 'oeu', 'Oeu008383.1' => 'oeu', 'Oeu014928.1' => 'oeu', 'Oeu019889.1' => 'oeu', 'Oeu022271.1' => 'oeu', 'Oeu025271.1' => 'oeu', 'Oeu036302.1' => 'oeu', 'Oeu044100.1' => 'oeu', 'Os01g0528300' => 'osa', 'Os03g0286200' => 'osa', 'Os04g0406600' => 'osa', 'Os07g0512000' => 'osa', 'Os07g0694600' => 'osa', 'Os08g0411000' => 'osa', 'Os09g0565700' => 'osa', 'Os09g0566050' => 'osa', 'Os10g0523700' => 'osa', 'Peaxi162Scf00002g00514' => 'pax', 'Peaxi162Scf00047g01817' => 'pax', 'Peaxi162Scf00114g00001' => 'pax', 'Peaxi162Scf00147g00613' => 'pax', 'Peaxi162Scf00389g00425' => 'pax', 'PGR042G1139' => 'pgr', 'PGR042G3273' => 'pgr', 'PGR102G2180' => 'pgr', 'PGR119G0234' => 'pgr', 'PGR119G0668' => 'pgr', 'PGSC0003DMG400007122' => 'stu', 'PGSC0003DMG400016478' => 'stu', 'PGSC0003DMG400025374' => 'stu', 'PGSC0003DMG400026536' => 'stu', 'Phvul.003G079600' => 'pvu', 'Phvul.005G115600' => 'pvu', 'Phvul.005G127100' => 'pvu', 'Phvul.006G149500' => 'pvu', 'Phvul.006G149600' => 'pvu', 'Phvul.011G071800' => 'pvu', 'Phvul.011G090400' => 'pvu', 'Potri.004G013400' => 'ptr', 'Potri.004G188100' => 'ptr', 'Potri.008G195500' => 'ptr', 'Potri.009G148800' => 'ptr', 'Potri.011G004700' => 'ptr', 'Pp3c17_22810' => 'ppa', 'Pp3c18_4480' => 'ppa', 'Pp3c19_13030' => 'ppa', 'Pp3c1_33620' => 'ppa', 'Pp3c2_9380' => 'ppa', 'PRCOL_00001023' => 'pco', 'Prupe.3G216300' => 'ppe', 'Prupe.4G019500' => 'ppe', 'Prupe.6G092500' => 'ppe', 'Prupe.6G119200' => 'ppe', 'Psat0s1945g0080' => 'psa', 'Psat0s4167g0040' => 'psa', 'Psat1g185800' => 'psa', 'Psat4g006440' => 'psa', 'Psat4g006480' => 'psa', 'Psat4g168120' => 'psa', 'Psat5g255680' => 'psa', 'Psat5g261760' => 'psa', 'Psat7g222120' => 'psa', 'PSO063G7252' => 'pso', 'PSO170G4778' => 'pso', 'PSO210G2249' => 'pso', 'PSO339G2411' => 'pso', 'PSO339G2457' => 'pso', 'PSO339G2854' => 'pso', 'PSO339G4288' => 'pso', 'PSO339G4615' => 'pso', 'PSO384G2796' => 'pso', 'PSO384G2940' => 'pso', 'PSO384G4227' => 'pso', 'PSO478G1425' => 'pso', 'PSO541G3863' => 'pso', 'PSO675G0507' => 'pso', 'PSO782G0338' => 'pso', 'PSO832G0644' => 'pso', 'QL01p013664' => 'qlo', 'QL01p036598' => 'qlo', 'QL05p072984' => 'qlo', 'QL08p005768' => 'qlo', 'QL08p032743' => 'qlo', 'QL93p0073_0439' => 'qlo', 'QL93p0073_0444' => 'qlo', 'RcHm_v2.0_Chr5g0002851' => 'rch', 'RcHm_v2.0_Chr5g0055201' => 'rch', 'RcHm_v2.0_Chr5g0061191' => 'rch', 'RcHm_v2.0_Chr7g0203231' => 'rch', 'Rhsim01G0208100' => 'rsi', 'Rhsim01G0208200' => 'rsi', 'Rhsim02G0106500' => 'rsi', 'Rhsim03G0107900' => 'rsi', 'Rhsim06G0163400' => 'rsi', 'Rhsim13G0105200' => 'rsi', 'Sabra04G0006300' => 'sbr', 'Sabra04G0127000' => 'sbr', 'Sabra08G0148700' => 'sbr', 'Sabra09G0117400' => 'sbr', 'SalBow1G3326' => 'sbo', 'SalBow3G3228' => 'sbo', 'SalBow6G1634' => 'sbo', 'SalBow6G3603' => 'sbo', 'SalBow6G5266' => 'sbo', 'SalBow7G2265' => 'sbo', 'SalBow8G0850' => 'sbo', 'SalBow8G2592' => 'sbo', 'Sc05g0009240' => 'sci', 'Sc12g0002300' => 'sci', 'Sc21g0000100' => 'sci', 'Sc21g0004720' => 'sci', 'Sed0002949' => 'sed', 'Sed0004114' => 'sed', 'Sed0004306' => 'sed', 'Sed0006172' => 'sed', 'Sed0008413' => 'sed', 'Sed0013809' => 'sed', 'Sed0019556' => 'sed', 'SEGI_03570' => 'sgi', 'SEGI_07859' => 'sgi', 'SEGI_15042' => 'sgi', 'SEGI_16263' => 'sgi', 'SEGI_16552' => 'sgi', 'SEGI_24331' => 'sgi', 'SEGI_27316' => 'sgi', 'SEGI_29521' => 'sgi', 'SEGI_41342' => 'sgi', 'SGA_v2.0_scaffold27G11617' => 'sas', 'SGA_v2.0_scaffold316G48428' => 'sas', 'SGA_v2.0_scaffold49G18261' => 'sas', 'SGA_v2.0_scaffold7G03831' => 'sas', 'SGA_v2.0_scaffold93G28359' => 'sas', 'SHI02210' => 'shi', 'SHI06028' => 'shi', 'SHI06321' => 'shi', 'SMO111G0012' => 'smo', 'SMO228G0080' => 'smo', 'SMO356G0756' => 'smo', 'Solyc02g080620.3' => 'sly', 'Solyc06g074530.1' => 'sly', 'Solyc11g066890.1' => 'sly', 'Solyc11g072520.3' => 'sly', 'Sopen02g025330' => 'spe', 'Sopen06g031000' => 'spe', 'Sopen09g008240' => 'spe', 'Sopen09g025210' => 'spe', 'Sopen11g026600' => 'spe', 'Sopen11g030170' => 'spe', 'Sp1g10420' => 'spa', 'Sp3g06570' => 'spa', 'Sp4g10660' => 'spa', 'Sp5g16460' => 'spa', 'Sp6g22710' => 'spa', 'TAR365G0112' => 'tar', 'TAR369G0717' => 'tar', 'TAR374G0976' => 'tar', 'TAR623G1128' => 'tar', 'TAR626G1937' => 'tar', 'TAR627G0123' => 'tar', 'TAR628G0305' => 'tar', 'TAR636G1176' => 'tar', 'TAR636G2442' => 'tar', 'THA.LOC104800556' => 'tha', 'THA.LOC104809501' => 'tha', 'THA.LOC104815126' => 'tha', 'THA.LOC104815732' => 'tha', 'THA.LOC104823528' => 'tha', 'Thecc.02G365600' => 'tca', 'Thecc.06G222300' => 'tca', 'Thecc.09G261800' => 'tca', 'Thecc.09G291400' => 'tca', 'Thhalv10003028m.g' => 'esa', 'Thhalv10007886m.g' => 'esa', 'Thhalv10016085m.g' => 'esa', 'Thhalv10016681m.g' => 'esa', 'Thhalv10020951m.g' => 'esa', 'TPR.G15598' => 'tpr', 'TPR.G29305' => 'tpr', 'TPR.G32395' => 'tpr', 'TPR.G36998' => 'tpr', 'TPR.G4227' => 'tpr', 'TWI18G1433' => 'twi', 'TWI31G0755' => 'twi', 'TWI38G0912' => 'twi', 'TWI75G1097' => 'twi', 'TWI75G1619' => 'twi', 'TWI79G1336' => 'twi', 'unitig_0.g943' => 'ugi', 'unitig_0.g944' => 'ugi', 'unitig_22.g6646' => 'ugi', 'unitig_37.g12681' => 'ugi', 'unitig_8.g3290' => 'ugi', 'vmacro03278' => 'vma', 'vmacro12197' => 'vma', 'vmacro14478' => 'vma', 'vmacro15787' => 'vma', 'vmacro15789' => 'vma', 'vmacro15790' => 'vma', 'vmacro15806' => 'vma', 'vmacro22907' => 'vma', 'vmacro22908' => 'vma', 'vmacro22909' => 'vma', 'vmacro23108' => 'vma', 'VMungo0540G0540' => 'vmu', 'VMungo0540G2468' => 'vmu', 'VMungo1080G0390' => 'vmu', 'VMungo1080G1165' => 'vmu', 'VMungo1127G0170' => 'vmu', 'VMungo1127G2099' => 'vmu', 'VMungo1215G3013' => 'vmu', 'Zm00001eb013110' => 'zma', 'Zm00001eb084260' => 'zma', 'Zm00001eb096110' => 'zma', 'Zm00001eb217510' => 'zma', 'Zm00001eb322550' => 'zma', 'Zm00001eb390770' => 'zma', 'Zm00001eb397170' => 'zma', 'Zm00001eb404610' => 'zma', 'Zm00001eb421790' => 'zma' ) $gf_id = 'HOM05D000911' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000911' ) $data_identifier = 'HOM05D000911' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 16, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 5, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 6, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 8, 'nnu' => (int) 16, 'oeu' => (int) 8, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 5, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 16, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421790' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000911', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27780' => 'bna', 'A03p35380' => 'bna', 'A04p21160' => 'bna', 'A05p40570' => 'bna', 'A06p26900' => 'bna', 'A08p33230' => 'bna', 'A09p65960' => 'bna', 'A10p18290' => 'bna', 'Aa31LG1G12990' => 'aar', 'Aa31LG1G2980' => 'aar', 'Aa31LG4G14320' => 'aar', 'Aa31LG7G11800' => 'aar', 'Aa31sc36G50' => 'aar', 'Aa31sc36G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3721' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5459' => 'aag', 'Actinidia03028' => 'ach', 'Actinidia03753' => 'ach', 'Actinidia04187' => 'ach', 'Actinidia05509' => 'ach', 'Actinidia24180' => 'ach', 'Actinidia26906' => 'ach', 'Actinidia37097' => 'ach', 'Actinidia38249' => 'ach', 'Ah.01g003470' => 'amhyb', 'Ah.01g004580' => 'amhyb', 'Ah.01g014850' => 'amhyb', 'Ah.01g016830' => 'amhyb', 'Ah.14g088000' => 'amhyb', 'AL1G22980' => 'aly', 'AL3G18990' => 'aly', 'AL4G22440' => 'aly', 'AL4G33180' => 'aly', 'AL5G22920' => 'aly', 'AL6G33660' => 'aly', 'AL8G20720' => 'aly', 'Aqoxy1G00935' => 'aox', 'Aqoxy1G02094' => 'aox', 'Aqoxy2G01239' => 'aox', 'Aqoxy4G01870' => 'aox', 'Aqoxy7G00450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.36ZVTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71EM27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5D6C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH3WRE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3NCM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RIM768' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YB5YRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z36GDV' => 'arhy', 'AT1G08250' => 'ath', 'AT1G11790' => 'ath', 'AT2G27820' => 'ath', 'AT3G07630' => 'ath', 'AT3G44720' => 'ath', 'AT5G22630' => 'ath', 'ATR0693G304' => 'atr', 'ATR0794G109' => 'atr', 'ATR0820G120' => 'atr', 'ATR1159G064' => 'atr', 'Atru.chr10.2239' => 'acertr', 'Atru.chr3.3371' => 'acertr', 'Atru.chr6.3202' => 'acertr', 'AUR62006499' => 'cqu', 'AUR62012718' => 'cqu', 'AUR62021938' => 'cqu', 'AUR62023932' => 'cqu', 'AUR62025034' => 'cqu', 'AUR62025035' => 'cqu', 'AUR62038307' => 'cqu', 'AUR62043466' => 'cqu', 'BcaB02g10748' => 'bca', 'BcaB03g13231' => 'bca', 'BcaB03g14689' => 'bca', 'BcaB05g22716' => 'bca', 'BcaB06g28172' => 'bca', 'BcaB08g36413' => 'bca', 'BcaC01g02186' => 'bca', 'BcaC01g04272' => 'bca', 'BcaC02g08080' => 'bca', 'BcaC02g08227' => 'bca', 'BcaC03g13901' => 'bca', 'BcaC04g19593' => 'bca', 'BcaC04g20874' => 'bca', 'BcaC05g29557' => 'bca', 'BcaC06g35505' => 'bca', 'BcaC07g41954' => 'bca', 'BcaC07g41955' => 'bca', 'BcaC07g41956' => 'bca', 'BcaC07g42519' => 'bca', 'BcaC07g42520' => 'bca', 'BcaC07g42523' => 'bca', 'BcaC07g42524' => 'bca', 'BcaC07g42525' => 'bca', 'BcaC08g47480' => 'bca', 'BcaC08g47481' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00530' => 'bna', 'BolC2t07178H' => 'bol', 'BolC3t16567H' => 'bol', 'BolC4t27234H' => 'bol', 'BolC5t29728H' => 'bol', 'BolC5t34622H' => 'bol', 'BolC6t40321H' => 'bol', 'BolC7t42028H' => 'bol', 'BolC8t49125H' => 'bol', 'BolC8t52538H' => 'bol', 'BolC8t52539H' => 'bol', 'BolC9t56681H' => 'bol', 'BolC9t58266H' => 'bol', 'BolSC21t60294H' => 'bol', 'BraA02t05670Z' => 'bra', 'BraA03t12716Z' => 'bra', 'BraA04t17685Z' => 'bra', 'BraA05t22788Z' => 'bra', 'BraA06t24032Z' => 'bra', 'BraA06t25625Z' => 'bra', 'BraA07t27930Z' => 'bra', 'BraA08t35242Z' => 'bra', 'BraA09t38609Z' => 'bra', 'BraA10t43905Z' => 'bra', 'C02p11060' => 'bna', 'C03p42990' => 'bna', 'C03p67310' => 'bna', 'C04p56990' => 'bna', 'C04p58660' => 'bna', 'C05p09890' => 'bna', 'C05p59680' => 'bna', 'C06p19830' => 'bna', 'C06p53040' => 'bna', 'C07p15230' => 'bna', 'C08p50070' => 'bna', 'C08p50090' => 'bna', 'C09p38330' => 'bna', 'C09p53940' => 'bna', 'CAN.G1014.1' => 'can', 'CAN.G644.30' => 'can', 'CAN.G84.47' => 'can', 'CAN.G919.8' => 'can', 'CANSAT54G0113' => 'cansat', 'CANSAT54G1286' => 'cansat', 'CANSAT64G1020' => 'cansat', 'CARHR008080' => 'chi', 'CARHR008090' => 'chi', 'CARHR012130' => 'chi', 'CARHR038390' => 'chi', 'CARHR082330' => 'chi', 'CARHR120520' => 'chi', 'CARHR151470' => 'chi', 'CARHR190950' => 'chi', 'Carub.0001s0760' => 'cru', 'Carub.0001s1146' => 'cru', 'Carub.0003s0721' => 'cru', 'Carub.0004s0858' => 'cru', 'Carub.0005s1040' => 'cru', 'Carub.0006s2035' => 'cru', 'Carub.0015s0005' => 'cru', 'Ca_01607_v3' => 'car', 'Ca_01677_v3' => 'car', 'Ca_06087_v3' => 'car', 'Ca_19238_v3' => 'car', 'Ca_19373_v3' => 'car', 'Ca_21079_v3' => 'car', 'CBR_g54016' => 'cbr', 'CBR_g54018' => 'cbr', 'CBR_g54020' => 'cbr', 'Cc01_g09780' => 'ccan', 'Cc01_g11680' => 'ccan', 'Cc02_g15610' => 'ccan', 'Cc05_g04350' => 'ccan', 'Cc09_g01580' => 'ccan', 'CDE01G0795' => 'cde', 'CDE02G2024' => 'cde', 'CDE02G2260' => 'cde', 'CDE02G4561' => 'cde', 'CDE05G2733' => 'cde', 'CDE05G3422' => 'cde', 'CDE06G2003' => 'cde', 'CDE08G0576' => 'cde', 'CDE09G0048' => 'cde', 'CDE11G0805' => 'cde', 'Cfa003644' => 'cfa', 'Cfa006290' => 'cfa', 'Cfa010080' => 'cfa', 'Cfa011376' => 'cfa', 'Cfa011576' => 'cfa', 'Cfa011577' => 'cfa', 'Cfa014389' => 'cfa', 'Ciclev10006044m.g' => 'ccl', 'Ciclev10006954m.g' => 'ccl', 'Ciclev10015131m.g' => 'ccl', 'Ciclev10015580m.g' => 'ccl', 'Ciclev10028359m.g' => 'ccl', 'Ciclev10028573m.g' => 'ccl', 'CiPaw.03G159300' => 'cil', 'CiPaw.04G115100' => 'cil', 'CiPaw.09G092800' => 'cil', 'CiPaw.10G071800' => 'cil', 'CiPaw.13G105800' => 'cil', 'CiPaw.13G141000' => 'cil', 'CiPaw.14G103400' => 'cil', 'ClCG01G012700' => 'cla', 'ClCG01G012720' => 'cla', 'ClCG01G021920' => 'cla', 'ClCG02G008870' => 'cla', 'ClCG02G020840' => 'cla', 'ClCG02G021930' => 'cla', 'COL.COLO4_19302' => 'col', 'COL.COLO4_25262' => 'col', 'COL.COLO4_31788' => 'col', 'Cpa.g.c34684' => 'cpa', 'Cpa.g.c36520.1' => 'cpa', 'Cpa.g.c45626' => 'cpa', 'Cpa.g.sc121.17' => 'cpa', 'Cpa.g.sc13.22' => 'cpa', 'Cpa.g.sc87.88' => 'cpa', 'Cre06.g261800' => 'cre', 'CsaV3_1G014500' => 'csa', 'CsaV3_1G014510' => 'csa', 'CsaV3_2G034880' => 'csa', 'CsaV3_6G014760' => 'csa', 'CsaV3_6G021500' => 'csa', 'CsaV3_6G048980' => 'csa', 'CSS0002511' => 'camsi', 'CSS0007556' => 'camsi', 'CSS0008532' => 'camsi', 'CSS0009709' => 'camsi', 'CSS0010486' => 'camsi', 'CSS0016768' => 'camsi', 'CSS0023512' => 'camsi', 'CSS0025341' => 'camsi', 'CSS0027999' => 'camsi', 'CSS0028944' => 'camsi', 'CSS0032292' => 'camsi', 'CSS0032464' => 'camsi', 'CSS0037153' => 'camsi', 'CSS0039256' => 'camsi', 'CSS0048392' => 'camsi', 'CSS0050458' => 'camsi', 'DCAR_004224' => 'dca', 'DCAR_006147' => 'dca', 'DCAR_006465' => 'dca', 'DCAR_008159' => 'dca', 'DCAR_012164' => 'dca', 'DCAR_019764' => 'dca', 'Dinv05418' => 'din', 'Dinv10839' => 'din', 'Dinv12521' => 'din', 'Dinv13900' => 'din', 'Dinv29426' => 'din', 'Duzib150G0263' => 'dzi', 'Duzib168G1178' => 'dzi', 'Duzib168G1924' => 'dzi', 'Duzib170G0299' => 'dzi', 'Duzib170G0813' => 'dzi', 'Duzib235G1128' => 'dzi', 'Duzib248G1060' => 'dzi', 'ECA232G1910' => 'eca', 'ECA233G4621' => 'eca', 'ECA238G1216' => 'eca', 'ECA238G1784' => 'eca', 'ECA248G1242' => 'eca', 'EL10Ac8g20071' => 'bvu', 'EL10Ac9g21086' => 'bvu', 'EL10Ac9g22407' => 'bvu', 'EL10Ac9g22412' => 'bvu', 'Eucgr.A01119' => 'egr', 'Eucgr.E04043' => 'egr', 'Eucgr.J00428' => 'egr', 'Eucgr.J00958' => 'egr', 'FAN11G3091' => 'fan', 'FAN11G3651' => 'fan', 'FAN16G2566' => 'fan', 'FAN21G3155' => 'fan', 'FAN21G3400' => 'fan', 'FAN21G3543' => 'fan', 'FAN25G0234' => 'fan', 'FAN25G1422' => 'fan', 'FAN25G3392' => 'fan', 'FvH4_3g01940' => 'fve', 'FvH4_3g29870' => 'fve', 'FvH4_3g33680' => 'fve', 'Glyma.09G004200' => 'gma', 'Glyma.11G151288' => 'gma', 'Glyma.11G189100' => 'gma', 'Glyma.12G072500' => 'gma', 'Glyma.12G085500' => 'gma', 'Glyma.12G181800' => 'gma', 'Glyma.12G193000' => 'gma', 'Glyma.13G309300' => 'gma', 'Glyma.13G319000' => 'gma', 'Glyma.17G012600' => 'gma', 'Gohir.A06G148600' => 'ghi', 'Gohir.A07G115800' => 'ghi', 'Gohir.A08G003600' => 'ghi', 'Gohir.A09G093300' => 'ghi', 'Gohir.A09G105400' => 'ghi', 'Gohir.A09G105500' => 'ghi', 'Gohir.D06G154600' => 'ghi', 'Gohir.D07G120200' => 'ghi', 'Gohir.D08G013900' => 'ghi', 'Gohir.D09G093100' => 'ghi', 'Gohir.D09G102200' => 'ghi', 'Gohir.D09G102300' => 'ghi', 'Gorai.001G129400' => 'gra', 'Gorai.004G008200' => 'gra', 'Gorai.006G109800' => 'gra', 'Gorai.006G119500' => 'gra', 'Gorai.006G121300' => 'gra', 'Gorai.010G180700' => 'gra', 'GSVIVG01012716001' => 'vvi', 'GSVIVG01025118001' => 'vvi', 'GSVIVG01030439001' => 'vvi', 'GSVIVG01031397001' => 'vvi', 'HanXRQChr01g0004201' => 'han', 'HanXRQChr02g0054941' => 'han', 'HanXRQChr05g0141811' => 'han', 'HanXRQChr07g0197751' => 'han', 'HanXRQChr11g0346691' => 'han', 'HanXRQChr13g0396971' => 'han', 'HanXRQChr14g0432951' => 'han', 'HanXRQChr14g0452001' => 'han', 'HanXRQChr15g0496681' => 'han', 'HanXRQChr17g0557491' => 'han', 'HanXRQChr17g0557501' => 'han', 'Haze_06809' => 'cav', 'Haze_12852' => 'cav', 'Haze_15850' => 'cav', 'Haze_23446' => 'cav', 'Haze_23942' => 'cav', 'Haze_23943' => 'cav', 'Hma1.2p1_0091F.1_g046450' => 'hma', 'Hma1.2p1_0128F.1_g059910' => 'hma', 'Hma1.2p1_0249F.1_g102260' => 'hma', 'Hma1.2p1_0453F.1_g156190' => 'hma', 'Hma1.2p1_0695F.1_g204380' => 'hma', 'Hma1.2p1_0749F.1_g212650' => 'hma', 'Hma1.2p1_2156F.1_g315420' => 'hma', 'Hma1.2p1_2686F.1_g326940' => 'hma', 'HPP92_006428' => 'vpl', 'HPP92_012069' => 'vpl', 'HPP92_014129' => 'vpl', 'HPP92_014133' => 'vpl', 'HPP92_017315' => 'vpl', 'HPP92_026445' => 'vpl', 'HPP92_026446' => 'vpl', 'Hund00774' => 'sun', 'Hund07682' => 'sun', 'Hund21413' => 'sun', 'Hund23462' => 'sun', 'Hund23463' => 'sun', 'Lalb_Chr03g0027911' => 'lal', 'Lalb_Chr13g0304271' => 'lal', 'Lalb_Chr19g0137471' => 'lal', 'Lalb_Chr22g0350651' => 'lal', 'Lalb_Chr24g0395151' => 'lal', 'Lj1A1231T40' => 'lonja', 'Lj1A221T48' => 'lonja', 'Lj1C924T12' => 'lonja', 'Lj2C993G6' => 'lonja', 'Lj3g0005790' => 'lja', 'Lj3g0015432' => 'lja', 'Lj3g0017722' => 'lja', 'Lj3g0018497' => 'lja', 'Lj4g0025071' => 'lja', 'Lsat_1_v5_gn_1_129680' => 'lsa', 'Lsat_1_v5_gn_2_25321' => 'lsa', 'Lsat_1_v5_gn_2_95461' => 'lsa', 'Lsat_1_v5_gn_4_159620' => 'lsa', 'Lsat_1_v5_gn_6_41301' => 'lsa', 'Lsat_1_v5_gn_6_74660' => 'lsa', 'Lsat_1_v5_gn_7_11520' => 'lsa', 'Lsat_1_v5_gn_9_67680' => 'lsa', 'Manes.04G008300' => 'mes', 'Manes.04G008400' => 'mes', 'Manes.04G026500' => 'mes', 'Manes.10G135300' => 'mes', 'Manes.11G157300' => 'mes', 'Manes.12G074000' => 'mes', 'Manes.16G006200' => 'mes', 'Manes.17G026400' => 'mes', 'Mapoly0024s0086' => 'mpo', 'Mapoly0024s0087' => 'mpo', 'Mapoly0071s0057' => 'mpo', 'Mapoly0204s0012' => 'mpo', 'MBI04_g37681_MAGBIO' => 'mbi', 'MBI05_g17779_MAGBIO' => 'mbi', 'MBI12_g31184_MAGBIO' => 'mbi', 'MBI17_g11083_MAGBIO' => 'mbi', 'MBI18_g03883_MAGBIO' => 'mbi', 'MBI18_g28940_MAGBIO' => 'mbi', 'MCO01G690' => 'mco', 'MD03G1109900' => 'mdo', 'MD03G1134800' => 'mdo', 'MD05G1348000' => 'mdo', 'MD10G1322400' => 'mdo', 'MD11G1123300' => 'mdo', 'MD11G1157600' => 'mdo', 'Medtr2g084875' => 'mtr', 'Medtr2g088130' => 'mtr', 'Medtr4g055310' => 'mtr', 'Medtr4g061070' => 'mtr', 'Medtr4g132250' => 'mtr', 'MELO3C004795.2' => 'cme', 'MELO3C004797.2' => 'cme', 'MELO3C007396.2' => 'cme', 'MELO3C019277.2' => 'cme', 'MELO3C021449.2' => 'cme', 'MELO3C025736.2' => 'cme', 'Migut.D02175' => 'egut', 'Migut.H01573' => 'egut', 'Migut.M01327' => 'egut', 'Migut.N02513' => 'egut', 'MSTRG.14638' => 'ama', 'MSTRG.18632' => 'ama', 'MSTRG.7203' => 'ama', 'Nitab4.5_0000533g0140' => 'nta', 'Nitab4.5_0000888g0150' => 'nta', 'Nitab4.5_0001453g0040' => 'nta', 'Nitab4.5_0002827g0090' => 'nta', 'Nitab4.5_0003082g0040' => 'nta', 'Nitab4.5_0007799g0040' => 'nta', 'Nitab4.5_0008983g0010' => 'nta', 'Nitab4.5_0009017g0020' => 'nta', 'Nn1g02132' => 'nnu', 'Nn1g03492' => 'nnu', 'Nn1g03493' => 'nnu', 'Nn1g03494' => 'nnu', 'Nn1g07164' => 'nnu', 'Nn1g07291' => 'nnu', 'Nn2g10655' => 'nnu', 'Nn2g11652' => 'nnu', 'Nn2g14008' => 'nnu', 'Nn3g17476' => 'nnu', 'Nn3g17477' => 'nnu', 'Nn4g22370' => 'nnu', 'Nn4g25255' => 'nnu', 'Nn5g27755' => 'nnu', 'Nn6g34260' => 'nnu', 'Nn6g35041' => 'nnu', 'Oeu005924.1' => 'oeu', 'Oeu008383.1' => 'oeu', 'Oeu014928.1' => 'oeu', 'Oeu019889.1' => 'oeu', 'Oeu022271.1' => 'oeu', 'Oeu025271.1' => 'oeu', 'Oeu036302.1' => 'oeu', 'Oeu044100.1' => 'oeu', 'Os01g0528300' => 'osa', 'Os03g0286200' => 'osa', 'Os04g0406600' => 'osa', 'Os07g0512000' => 'osa', 'Os07g0694600' => 'osa', 'Os08g0411000' => 'osa', 'Os09g0565700' => 'osa', 'Os09g0566050' => 'osa', 'Os10g0523700' => 'osa', 'Peaxi162Scf00002g00514' => 'pax', 'Peaxi162Scf00047g01817' => 'pax', 'Peaxi162Scf00114g00001' => 'pax', 'Peaxi162Scf00147g00613' => 'pax', 'Peaxi162Scf00389g00425' => 'pax', 'PGR042G1139' => 'pgr', 'PGR042G3273' => 'pgr', 'PGR102G2180' => 'pgr', 'PGR119G0234' => 'pgr', 'PGR119G0668' => 'pgr', 'PGSC0003DMG400007122' => 'stu', 'PGSC0003DMG400016478' => 'stu', 'PGSC0003DMG400025374' => 'stu', 'PGSC0003DMG400026536' => 'stu', 'Phvul.003G079600' => 'pvu', 'Phvul.005G115600' => 'pvu', 'Phvul.005G127100' => 'pvu', 'Phvul.006G149500' => 'pvu', 'Phvul.006G149600' => 'pvu', 'Phvul.011G071800' => 'pvu', 'Phvul.011G090400' => 'pvu', 'Potri.004G013400' => 'ptr', 'Potri.004G188100' => 'ptr', 'Potri.008G195500' => 'ptr', 'Potri.009G148800' => 'ptr', 'Potri.011G004700' => 'ptr', 'Pp3c17_22810' => 'ppa', 'Pp3c18_4480' => 'ppa', 'Pp3c19_13030' => 'ppa', 'Pp3c1_33620' => 'ppa', 'Pp3c2_9380' => 'ppa', 'PRCOL_00001023' => 'pco', 'Prupe.3G216300' => 'ppe', 'Prupe.4G019500' => 'ppe', 'Prupe.6G092500' => 'ppe', 'Prupe.6G119200' => 'ppe', 'Psat0s1945g0080' => 'psa', 'Psat0s4167g0040' => 'psa', 'Psat1g185800' => 'psa', 'Psat4g006440' => 'psa', 'Psat4g006480' => 'psa', 'Psat4g168120' => 'psa', 'Psat5g255680' => 'psa', 'Psat5g261760' => 'psa', 'Psat7g222120' => 'psa', 'PSO063G7252' => 'pso', 'PSO170G4778' => 'pso', 'PSO210G2249' => 'pso', 'PSO339G2411' => 'pso', 'PSO339G2457' => 'pso', 'PSO339G2854' => 'pso', 'PSO339G4288' => 'pso', 'PSO339G4615' => 'pso', 'PSO384G2796' => 'pso', 'PSO384G2940' => 'pso', 'PSO384G4227' => 'pso', 'PSO478G1425' => 'pso', 'PSO541G3863' => 'pso', 'PSO675G0507' => 'pso', 'PSO782G0338' => 'pso', 'PSO832G0644' => 'pso', 'QL01p013664' => 'qlo', 'QL01p036598' => 'qlo', 'QL05p072984' => 'qlo', 'QL08p005768' => 'qlo', 'QL08p032743' => 'qlo', 'QL93p0073_0439' => 'qlo', 'QL93p0073_0444' => 'qlo', 'RcHm_v2.0_Chr5g0002851' => 'rch', 'RcHm_v2.0_Chr5g0055201' => 'rch', 'RcHm_v2.0_Chr5g0061191' => 'rch', 'RcHm_v2.0_Chr7g0203231' => 'rch', 'Rhsim01G0208100' => 'rsi', 'Rhsim01G0208200' => 'rsi', 'Rhsim02G0106500' => 'rsi', 'Rhsim03G0107900' => 'rsi', 'Rhsim06G0163400' => 'rsi', 'Rhsim13G0105200' => 'rsi', 'Sabra04G0006300' => 'sbr', 'Sabra04G0127000' => 'sbr', 'Sabra08G0148700' => 'sbr', 'Sabra09G0117400' => 'sbr', 'SalBow1G3326' => 'sbo', 'SalBow3G3228' => 'sbo', 'SalBow6G1634' => 'sbo', 'SalBow6G3603' => 'sbo', 'SalBow6G5266' => 'sbo', 'SalBow7G2265' => 'sbo', 'SalBow8G0850' => 'sbo', 'SalBow8G2592' => 'sbo', 'Sc05g0009240' => 'sci', 'Sc12g0002300' => 'sci', 'Sc21g0000100' => 'sci', 'Sc21g0004720' => 'sci', 'Sed0002949' => 'sed', 'Sed0004114' => 'sed', 'Sed0004306' => 'sed', 'Sed0006172' => 'sed', 'Sed0008413' => 'sed', 'Sed0013809' => 'sed', 'Sed0019556' => 'sed', 'SEGI_03570' => 'sgi', 'SEGI_07859' => 'sgi', 'SEGI_15042' => 'sgi', 'SEGI_16263' => 'sgi', 'SEGI_16552' => 'sgi', 'SEGI_24331' => 'sgi', 'SEGI_27316' => 'sgi', 'SEGI_29521' => 'sgi', 'SEGI_41342' => 'sgi', 'SGA_v2.0_scaffold27G11617' => 'sas', 'SGA_v2.0_scaffold316G48428' => 'sas', 'SGA_v2.0_scaffold49G18261' => 'sas', 'SGA_v2.0_scaffold7G03831' => 'sas', 'SGA_v2.0_scaffold93G28359' => 'sas', 'SHI02210' => 'shi', 'SHI06028' => 'shi', 'SHI06321' => 'shi', 'SMO111G0012' => 'smo', 'SMO228G0080' => 'smo', 'SMO356G0756' => 'smo', 'Solyc02g080620.3' => 'sly', 'Solyc06g074530.1' => 'sly', 'Solyc11g066890.1' => 'sly', 'Solyc11g072520.3' => 'sly', 'Sopen02g025330' => 'spe', 'Sopen06g031000' => 'spe', 'Sopen09g008240' => 'spe', 'Sopen09g025210' => 'spe', 'Sopen11g026600' => 'spe', 'Sopen11g030170' => 'spe', 'Sp1g10420' => 'spa', 'Sp3g06570' => 'spa', 'Sp4g10660' => 'spa', 'Sp5g16460' => 'spa', 'Sp6g22710' => 'spa', 'TAR365G0112' => 'tar', 'TAR369G0717' => 'tar', 'TAR374G0976' => 'tar', 'TAR623G1128' => 'tar', 'TAR626G1937' => 'tar', 'TAR627G0123' => 'tar', 'TAR628G0305' => 'tar', 'TAR636G1176' => 'tar', 'TAR636G2442' => 'tar', 'THA.LOC104800556' => 'tha', 'THA.LOC104809501' => 'tha', 'THA.LOC104815126' => 'tha', 'THA.LOC104815732' => 'tha', 'THA.LOC104823528' => 'tha', 'Thecc.02G365600' => 'tca', 'Thecc.06G222300' => 'tca', 'Thecc.09G261800' => 'tca', 'Thecc.09G291400' => 'tca', 'Thhalv10003028m.g' => 'esa', 'Thhalv10007886m.g' => 'esa', 'Thhalv10016085m.g' => 'esa', 'Thhalv10016681m.g' => 'esa', 'Thhalv10020951m.g' => 'esa', 'TPR.G15598' => 'tpr', 'TPR.G29305' => 'tpr', 'TPR.G32395' => 'tpr', 'TPR.G36998' => 'tpr', 'TPR.G4227' => 'tpr', 'TWI18G1433' => 'twi', 'TWI31G0755' => 'twi', 'TWI38G0912' => 'twi', 'TWI75G1097' => 'twi', 'TWI75G1619' => 'twi', 'TWI79G1336' => 'twi', 'unitig_0.g943' => 'ugi', 'unitig_0.g944' => 'ugi', 'unitig_22.g6646' => 'ugi', 'unitig_37.g12681' => 'ugi', 'unitig_8.g3290' => 'ugi', 'vmacro03278' => 'vma', 'vmacro12197' => 'vma', 'vmacro14478' => 'vma', 'vmacro15787' => 'vma', 'vmacro15789' => 'vma', 'vmacro15790' => 'vma', 'vmacro15806' => 'vma', 'vmacro22907' => 'vma', 'vmacro22908' => 'vma', 'vmacro22909' => 'vma', 'vmacro23108' => 'vma', 'VMungo0540G0540' => 'vmu', 'VMungo0540G2468' => 'vmu', 'VMungo1080G0390' => 'vmu', 'VMungo1080G1165' => 'vmu', 'VMungo1127G0170' => 'vmu', 'VMungo1127G2099' => 'vmu', 'VMungo1215G3013' => 'vmu', 'Zm00001eb013110' => 'zma', 'Zm00001eb084260' => 'zma', 'Zm00001eb096110' => 'zma', 'Zm00001eb217510' => 'zma', 'Zm00001eb322550' => 'zma', 'Zm00001eb390770' => 'zma', 'Zm00001eb397170' => 'zma', 'Zm00001eb404610' => 'zma', 'Zm00001eb421790' => 'zma' ), 'gf_id' => 'HOM05D000911', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000911' ), 'data_identifier' => 'HOM05D000911', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000911', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27780' => 'bna', 'A03p35380' => 'bna', 'A04p21160' => 'bna', 'A05p40570' => 'bna', 'A06p26900' => 'bna', 'A08p33230' => 'bna', 'A09p65960' => 'bna', 'A10p18290' => 'bna', 'Aa31LG1G12990' => 'aar', 'Aa31LG1G2980' => 'aar', 'Aa31LG4G14320' => 'aar', 'Aa31LG7G11800' => 'aar', 'Aa31sc36G50' => 'aar', 'Aa31sc36G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3721' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5459' => 'aag', 'Actinidia03028' => 'ach', 'Actinidia03753' => 'ach', 'Actinidia04187' => 'ach', 'Actinidia05509' => 'ach', 'Actinidia24180' => 'ach', 'Actinidia26906' => 'ach', 'Actinidia37097' => 'ach', 'Actinidia38249' => 'ach', 'Ah.01g003470' => 'amhyb', 'Ah.01g004580' => 'amhyb', 'Ah.01g014850' => 'amhyb', 'Ah.01g016830' => 'amhyb', 'Ah.14g088000' => 'amhyb', 'AL1G22980' => 'aly', 'AL3G18990' => 'aly', 'AL4G22440' => 'aly', 'AL4G33180' => 'aly', 'AL5G22920' => 'aly', 'AL6G33660' => 'aly', 'AL8G20720' => 'aly', 'Aqoxy1G00935' => 'aox', 'Aqoxy1G02094' => 'aox', 'Aqoxy2G01239' => 'aox', 'Aqoxy4G01870' => 'aox', 'Aqoxy7G00450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.36ZVTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71EM27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5D6C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH3WRE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3NCM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RIM768' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YB5YRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z36GDV' => 'arhy', 'AT1G08250' => 'ath', 'AT1G11790' => 'ath', 'AT2G27820' => 'ath', 'AT3G07630' => 'ath', 'AT3G44720' => 'ath', 'AT5G22630' => 'ath', 'ATR0693G304' => 'atr', 'ATR0794G109' => 'atr', 'ATR0820G120' => 'atr', 'ATR1159G064' => 'atr', 'Atru.chr10.2239' => 'acertr', 'Atru.chr3.3371' => 'acertr', 'Atru.chr6.3202' => 'acertr', 'AUR62006499' => 'cqu', 'AUR62012718' => 'cqu', 'AUR62021938' => 'cqu', 'AUR62023932' => 'cqu', 'AUR62025034' => 'cqu', 'AUR62025035' => 'cqu', 'AUR62038307' => 'cqu', 'AUR62043466' => 'cqu', 'BcaB02g10748' => 'bca', 'BcaB03g13231' => 'bca', 'BcaB03g14689' => 'bca', 'BcaB05g22716' => 'bca', 'BcaB06g28172' => 'bca', 'BcaB08g36413' => 'bca', 'BcaC01g02186' => 'bca', 'BcaC01g04272' => 'bca', 'BcaC02g08080' => 'bca', 'BcaC02g08227' => 'bca', 'BcaC03g13901' => 'bca', 'BcaC04g19593' => 'bca', 'BcaC04g20874' => 'bca', 'BcaC05g29557' => 'bca', 'BcaC06g35505' => 'bca', 'BcaC07g41954' => 'bca', 'BcaC07g41955' => 'bca', 'BcaC07g41956' => 'bca', 'BcaC07g42519' => 'bca', 'BcaC07g42520' => 'bca', 'BcaC07g42523' => 'bca', 'BcaC07g42524' => 'bca', 'BcaC07g42525' => 'bca', 'BcaC08g47480' => 'bca', 'BcaC08g47481' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00530' => 'bna', 'BolC2t07178H' => 'bol', 'BolC3t16567H' => 'bol', 'BolC4t27234H' => 'bol', 'BolC5t29728H' => 'bol', 'BolC5t34622H' => 'bol', 'BolC6t40321H' => 'bol', 'BolC7t42028H' => 'bol', 'BolC8t49125H' => 'bol', 'BolC8t52538H' => 'bol', 'BolC8t52539H' => 'bol', 'BolC9t56681H' => 'bol', 'BolC9t58266H' => 'bol', 'BolSC21t60294H' => 'bol', 'BraA02t05670Z' => 'bra', 'BraA03t12716Z' => 'bra', 'BraA04t17685Z' => 'bra', 'BraA05t22788Z' => 'bra', 'BraA06t24032Z' => 'bra', 'BraA06t25625Z' => 'bra', 'BraA07t27930Z' => 'bra', 'BraA08t35242Z' => 'bra', 'BraA09t38609Z' => 'bra', 'BraA10t43905Z' => 'bra', 'C02p11060' => 'bna', 'C03p42990' => 'bna', 'C03p67310' => 'bna', 'C04p56990' => 'bna', 'C04p58660' => 'bna', 'C05p09890' => 'bna', 'C05p59680' => 'bna', 'C06p19830' => 'bna', 'C06p53040' => 'bna', 'C07p15230' => 'bna', 'C08p50070' => 'bna', 'C08p50090' => 'bna', 'C09p38330' => 'bna', 'C09p53940' => 'bna', 'CAN.G1014.1' => 'can', 'CAN.G644.30' => 'can', 'CAN.G84.47' => 'can', 'CAN.G919.8' => 'can', 'CANSAT54G0113' => 'cansat', 'CANSAT54G1286' => 'cansat', 'CANSAT64G1020' => 'cansat', 'CARHR008080' => 'chi', 'CARHR008090' => 'chi', 'CARHR012130' => 'chi', 'CARHR038390' => 'chi', 'CARHR082330' => 'chi', 'CARHR120520' => 'chi', 'CARHR151470' => 'chi', 'CARHR190950' => 'chi', 'Carub.0001s0760' => 'cru', 'Carub.0001s1146' => 'cru', 'Carub.0003s0721' => 'cru', 'Carub.0004s0858' => 'cru', 'Carub.0005s1040' => 'cru', 'Carub.0006s2035' => 'cru', 'Carub.0015s0005' => 'cru', 'Ca_01607_v3' => 'car', 'Ca_01677_v3' => 'car', 'Ca_06087_v3' => 'car', 'Ca_19238_v3' => 'car', 'Ca_19373_v3' => 'car', 'Ca_21079_v3' => 'car', 'CBR_g54016' => 'cbr', 'CBR_g54018' => 'cbr', 'CBR_g54020' => 'cbr', 'Cc01_g09780' => 'ccan', 'Cc01_g11680' => 'ccan', 'Cc02_g15610' => 'ccan', 'Cc05_g04350' => 'ccan', 'Cc09_g01580' => 'ccan', 'CDE01G0795' => 'cde', 'CDE02G2024' => 'cde', 'CDE02G2260' => 'cde', 'CDE02G4561' => 'cde', 'CDE05G2733' => 'cde', 'CDE05G3422' => 'cde', 'CDE06G2003' => 'cde', 'CDE08G0576' => 'cde', 'CDE09G0048' => 'cde', 'CDE11G0805' => 'cde', 'Cfa003644' => 'cfa', 'Cfa006290' => 'cfa', 'Cfa010080' => 'cfa', 'Cfa011376' => 'cfa', 'Cfa011576' => 'cfa', 'Cfa011577' => 'cfa', 'Cfa014389' => 'cfa', 'Ciclev10006044m.g' => 'ccl', 'Ciclev10006954m.g' => 'ccl', 'Ciclev10015131m.g' => 'ccl', 'Ciclev10015580m.g' => 'ccl', 'Ciclev10028359m.g' => 'ccl', 'Ciclev10028573m.g' => 'ccl', 'CiPaw.03G159300' => 'cil', 'CiPaw.04G115100' => 'cil', 'CiPaw.09G092800' => 'cil', 'CiPaw.10G071800' => 'cil', 'CiPaw.13G105800' => 'cil', 'CiPaw.13G141000' => 'cil', 'CiPaw.14G103400' => 'cil', 'ClCG01G012700' => 'cla', 'ClCG01G012720' => 'cla', 'ClCG01G021920' => 'cla', 'ClCG02G008870' => 'cla', 'ClCG02G020840' => 'cla', 'ClCG02G021930' => 'cla', 'COL.COLO4_19302' => 'col', 'COL.COLO4_25262' => 'col', 'COL.COLO4_31788' => 'col', 'Cpa.g.c34684' => 'cpa', 'Cpa.g.c36520.1' => 'cpa', 'Cpa.g.c45626' => 'cpa', 'Cpa.g.sc121.17' => 'cpa', 'Cpa.g.sc13.22' => 'cpa', 'Cpa.g.sc87.88' => 'cpa', 'Cre06.g261800' => 'cre', 'CsaV3_1G014500' => 'csa', 'CsaV3_1G014510' => 'csa', 'CsaV3_2G034880' => 'csa', 'CsaV3_6G014760' => 'csa', 'CsaV3_6G021500' => 'csa', 'CsaV3_6G048980' => 'csa', 'CSS0002511' => 'camsi', 'CSS0007556' => 'camsi', 'CSS0008532' => 'camsi', 'CSS0009709' => 'camsi', 'CSS0010486' => 'camsi', 'CSS0016768' => 'camsi', 'CSS0023512' => 'camsi', 'CSS0025341' => 'camsi', 'CSS0027999' => 'camsi', 'CSS0028944' => 'camsi', 'CSS0032292' => 'camsi', 'CSS0032464' => 'camsi', 'CSS0037153' => 'camsi', 'CSS0039256' => 'camsi', 'CSS0048392' => 'camsi', 'CSS0050458' => 'camsi', 'DCAR_004224' => 'dca', 'DCAR_006147' => 'dca', 'DCAR_006465' => 'dca', 'DCAR_008159' => 'dca', 'DCAR_012164' => 'dca', 'DCAR_019764' => 'dca', 'Dinv05418' => 'din', 'Dinv10839' => 'din', 'Dinv12521' => 'din', 'Dinv13900' => 'din', 'Dinv29426' => 'din', 'Duzib150G0263' => 'dzi', 'Duzib168G1178' => 'dzi', 'Duzib168G1924' => 'dzi', 'Duzib170G0299' => 'dzi', 'Duzib170G0813' => 'dzi', 'Duzib235G1128' => 'dzi', 'Duzib248G1060' => 'dzi', 'ECA232G1910' => 'eca', 'ECA233G4621' => 'eca', 'ECA238G1216' => 'eca', 'ECA238G1784' => 'eca', 'ECA248G1242' => 'eca', 'EL10Ac8g20071' => 'bvu', 'EL10Ac9g21086' => 'bvu', 'EL10Ac9g22407' => 'bvu', 'EL10Ac9g22412' => 'bvu', 'Eucgr.A01119' => 'egr', 'Eucgr.E04043' => 'egr', 'Eucgr.J00428' => 'egr', 'Eucgr.J00958' => 'egr', 'FAN11G3091' => 'fan', 'FAN11G3651' => 'fan', 'FAN16G2566' => 'fan', 'FAN21G3155' => 'fan', 'FAN21G3400' => 'fan', 'FAN21G3543' => 'fan', 'FAN25G0234' => 'fan', 'FAN25G1422' => 'fan', 'FAN25G3392' => 'fan', 'FvH4_3g01940' => 'fve', 'FvH4_3g29870' => 'fve', 'FvH4_3g33680' => 'fve', 'Glyma.09G004200' => 'gma', 'Glyma.11G151288' => 'gma', 'Glyma.11G189100' => 'gma', 'Glyma.12G072500' => 'gma', 'Glyma.12G085500' => 'gma', 'Glyma.12G181800' => 'gma', 'Glyma.12G193000' => 'gma', 'Glyma.13G309300' => 'gma', 'Glyma.13G319000' => 'gma', 'Glyma.17G012600' => 'gma', 'Gohir.A06G148600' => 'ghi', 'Gohir.A07G115800' => 'ghi', 'Gohir.A08G003600' => 'ghi', 'Gohir.A09G093300' => 'ghi', 'Gohir.A09G105400' => 'ghi', 'Gohir.A09G105500' => 'ghi', 'Gohir.D06G154600' => 'ghi', 'Gohir.D07G120200' => 'ghi', 'Gohir.D08G013900' => 'ghi', 'Gohir.D09G093100' => 'ghi', 'Gohir.D09G102200' => 'ghi', 'Gohir.D09G102300' => 'ghi', 'Gorai.001G129400' => 'gra', 'Gorai.004G008200' => 'gra', 'Gorai.006G109800' => 'gra', 'Gorai.006G119500' => 'gra', 'Gorai.006G121300' => 'gra', 'Gorai.010G180700' => 'gra', 'GSVIVG01012716001' => 'vvi', 'GSVIVG01025118001' => 'vvi', 'GSVIVG01030439001' => 'vvi', 'GSVIVG01031397001' => 'vvi', 'HanXRQChr01g0004201' => 'han', 'HanXRQChr02g0054941' => 'han', 'HanXRQChr05g0141811' => 'han', 'HanXRQChr07g0197751' => 'han', 'HanXRQChr11g0346691' => 'han', 'HanXRQChr13g0396971' => 'han', 'HanXRQChr14g0432951' => 'han', 'HanXRQChr14g0452001' => 'han', 'HanXRQChr15g0496681' => 'han', 'HanXRQChr17g0557491' => 'han', 'HanXRQChr17g0557501' => 'han', 'Haze_06809' => 'cav', 'Haze_12852' => 'cav', 'Haze_15850' => 'cav', 'Haze_23446' => 'cav', 'Haze_23942' => 'cav', 'Haze_23943' => 'cav', 'Hma1.2p1_0091F.1_g046450' => 'hma', 'Hma1.2p1_0128F.1_g059910' => 'hma', 'Hma1.2p1_0249F.1_g102260' => 'hma', 'Hma1.2p1_0453F.1_g156190' => 'hma', 'Hma1.2p1_0695F.1_g204380' => 'hma', 'Hma1.2p1_0749F.1_g212650' => 'hma', 'Hma1.2p1_2156F.1_g315420' => 'hma', 'Hma1.2p1_2686F.1_g326940' => 'hma', 'HPP92_006428' => 'vpl', 'HPP92_012069' => 'vpl', 'HPP92_014129' => 'vpl', 'HPP92_014133' => 'vpl', 'HPP92_017315' => 'vpl', 'HPP92_026445' => 'vpl', 'HPP92_026446' => 'vpl', 'Hund00774' => 'sun', 'Hund07682' => 'sun', 'Hund21413' => 'sun', 'Hund23462' => 'sun', 'Hund23463' => 'sun', 'Lalb_Chr03g0027911' => 'lal', 'Lalb_Chr13g0304271' => 'lal', 'Lalb_Chr19g0137471' => 'lal', 'Lalb_Chr22g0350651' => 'lal', 'Lalb_Chr24g0395151' => 'lal', 'Lj1A1231T40' => 'lonja', 'Lj1A221T48' => 'lonja', 'Lj1C924T12' => 'lonja', 'Lj2C993G6' => 'lonja', 'Lj3g0005790' => 'lja', 'Lj3g0015432' => 'lja', 'Lj3g0017722' => 'lja', 'Lj3g0018497' => 'lja', 'Lj4g0025071' => 'lja', 'Lsat_1_v5_gn_1_129680' => 'lsa', 'Lsat_1_v5_gn_2_25321' => 'lsa', 'Lsat_1_v5_gn_2_95461' => 'lsa', 'Lsat_1_v5_gn_4_159620' => 'lsa', 'Lsat_1_v5_gn_6_41301' => 'lsa', 'Lsat_1_v5_gn_6_74660' => 'lsa', 'Lsat_1_v5_gn_7_11520' => 'lsa', 'Lsat_1_v5_gn_9_67680' => 'lsa', 'Manes.04G008300' => 'mes', 'Manes.04G008400' => 'mes', 'Manes.04G026500' => 'mes', 'Manes.10G135300' => 'mes', 'Manes.11G157300' => 'mes', 'Manes.12G074000' => 'mes', 'Manes.16G006200' => 'mes', 'Manes.17G026400' => 'mes', 'Mapoly0024s0086' => 'mpo', 'Mapoly0024s0087' => 'mpo', 'Mapoly0071s0057' => 'mpo', 'Mapoly0204s0012' => 'mpo', 'MBI04_g37681_MAGBIO' => 'mbi', 'MBI05_g17779_MAGBIO' => 'mbi', 'MBI12_g31184_MAGBIO' => 'mbi', 'MBI17_g11083_MAGBIO' => 'mbi', 'MBI18_g03883_MAGBIO' => 'mbi', 'MBI18_g28940_MAGBIO' => 'mbi', 'MCO01G690' => 'mco', 'MD03G1109900' => 'mdo', 'MD03G1134800' => 'mdo', 'MD05G1348000' => 'mdo', 'MD10G1322400' => 'mdo', 'MD11G1123300' => 'mdo', 'MD11G1157600' => 'mdo', 'Medtr2g084875' => 'mtr', 'Medtr2g088130' => 'mtr', 'Medtr4g055310' => 'mtr', 'Medtr4g061070' => 'mtr', 'Medtr4g132250' => 'mtr', 'MELO3C004795.2' => 'cme', 'MELO3C004797.2' => 'cme', 'MELO3C007396.2' => 'cme', 'MELO3C019277.2' => 'cme', 'MELO3C021449.2' => 'cme', 'MELO3C025736.2' => 'cme', 'Migut.D02175' => 'egut', 'Migut.H01573' => 'egut', 'Migut.M01327' => 'egut', 'Migut.N02513' => 'egut', 'MSTRG.14638' => 'ama', 'MSTRG.18632' => 'ama', 'MSTRG.7203' => 'ama', 'Nitab4.5_0000533g0140' => 'nta', 'Nitab4.5_0000888g0150' => 'nta', 'Nitab4.5_0001453g0040' => 'nta', 'Nitab4.5_0002827g0090' => 'nta', 'Nitab4.5_0003082g0040' => 'nta', 'Nitab4.5_0007799g0040' => 'nta', 'Nitab4.5_0008983g0010' => 'nta', 'Nitab4.5_0009017g0020' => 'nta', 'Nn1g02132' => 'nnu', 'Nn1g03492' => 'nnu', 'Nn1g03493' => 'nnu', 'Nn1g03494' => 'nnu', 'Nn1g07164' => 'nnu', 'Nn1g07291' => 'nnu', 'Nn2g10655' => 'nnu', 'Nn2g11652' => 'nnu', 'Nn2g14008' => 'nnu', 'Nn3g17476' => 'nnu', 'Nn3g17477' => 'nnu', 'Nn4g22370' => 'nnu', 'Nn4g25255' => 'nnu', 'Nn5g27755' => 'nnu', 'Nn6g34260' => 'nnu', 'Nn6g35041' => 'nnu', 'Oeu005924.1' => 'oeu', 'Oeu008383.1' => 'oeu', 'Oeu014928.1' => 'oeu', 'Oeu019889.1' => 'oeu', 'Oeu022271.1' => 'oeu', 'Oeu025271.1' => 'oeu', 'Oeu036302.1' => 'oeu', 'Oeu044100.1' => 'oeu', 'Os01g0528300' => 'osa', 'Os03g0286200' => 'osa', 'Os04g0406600' => 'osa', 'Os07g0512000' => 'osa', 'Os07g0694600' => 'osa', 'Os08g0411000' => 'osa', 'Os09g0565700' => 'osa', 'Os09g0566050' => 'osa', 'Os10g0523700' => 'osa', 'Peaxi162Scf00002g00514' => 'pax', 'Peaxi162Scf00047g01817' => 'pax', 'Peaxi162Scf00114g00001' => 'pax', 'Peaxi162Scf00147g00613' => 'pax', 'Peaxi162Scf00389g00425' => 'pax', 'PGR042G1139' => 'pgr', 'PGR042G3273' => 'pgr', 'PGR102G2180' => 'pgr', 'PGR119G0234' => 'pgr', 'PGR119G0668' => 'pgr', 'PGSC0003DMG400007122' => 'stu', 'PGSC0003DMG400016478' => 'stu', 'PGSC0003DMG400025374' => 'stu', 'PGSC0003DMG400026536' => 'stu', 'Phvul.003G079600' => 'pvu', 'Phvul.005G115600' => 'pvu', 'Phvul.005G127100' => 'pvu', 'Phvul.006G149500' => 'pvu', 'Phvul.006G149600' => 'pvu', 'Phvul.011G071800' => 'pvu', 'Phvul.011G090400' => 'pvu', 'Potri.004G013400' => 'ptr', 'Potri.004G188100' => 'ptr', 'Potri.008G195500' => 'ptr', 'Potri.009G148800' => 'ptr', 'Potri.011G004700' => 'ptr', 'Pp3c17_22810' => 'ppa', 'Pp3c18_4480' => 'ppa', 'Pp3c19_13030' => 'ppa', 'Pp3c1_33620' => 'ppa', 'Pp3c2_9380' => 'ppa', 'PRCOL_00001023' => 'pco', 'Prupe.3G216300' => 'ppe', 'Prupe.4G019500' => 'ppe', 'Prupe.6G092500' => 'ppe', 'Prupe.6G119200' => 'ppe', 'Psat0s1945g0080' => 'psa', 'Psat0s4167g0040' => 'psa', 'Psat1g185800' => 'psa', 'Psat4g006440' => 'psa', 'Psat4g006480' => 'psa', 'Psat4g168120' => 'psa', 'Psat5g255680' => 'psa', 'Psat5g261760' => 'psa', 'Psat7g222120' => 'psa', 'PSO063G7252' => 'pso', 'PSO170G4778' => 'pso', 'PSO210G2249' => 'pso', 'PSO339G2411' => 'pso', 'PSO339G2457' => 'pso', 'PSO339G2854' => 'pso', 'PSO339G4288' => 'pso', 'PSO339G4615' => 'pso', 'PSO384G2796' => 'pso', 'PSO384G2940' => 'pso', 'PSO384G4227' => 'pso', 'PSO478G1425' => 'pso', 'PSO541G3863' => 'pso', 'PSO675G0507' => 'pso', 'PSO782G0338' => 'pso', 'PSO832G0644' => 'pso', 'QL01p013664' => 'qlo', 'QL01p036598' => 'qlo', 'QL05p072984' => 'qlo', 'QL08p005768' => 'qlo', 'QL08p032743' => 'qlo', 'QL93p0073_0439' => 'qlo', 'QL93p0073_0444' => 'qlo', 'RcHm_v2.0_Chr5g0002851' => 'rch', 'RcHm_v2.0_Chr5g0055201' => 'rch', 'RcHm_v2.0_Chr5g0061191' => 'rch', 'RcHm_v2.0_Chr7g0203231' => 'rch', 'Rhsim01G0208100' => 'rsi', 'Rhsim01G0208200' => 'rsi', 'Rhsim02G0106500' => 'rsi', 'Rhsim03G0107900' => 'rsi', 'Rhsim06G0163400' => 'rsi', 'Rhsim13G0105200' => 'rsi', 'Sabra04G0006300' => 'sbr', 'Sabra04G0127000' => 'sbr', 'Sabra08G0148700' => 'sbr', 'Sabra09G0117400' => 'sbr', 'SalBow1G3326' => 'sbo', 'SalBow3G3228' => 'sbo', 'SalBow6G1634' => 'sbo', 'SalBow6G3603' => 'sbo', 'SalBow6G5266' => 'sbo', 'SalBow7G2265' => 'sbo', 'SalBow8G0850' => 'sbo', 'SalBow8G2592' => 'sbo', 'Sc05g0009240' => 'sci', 'Sc12g0002300' => 'sci', 'Sc21g0000100' => 'sci', 'Sc21g0004720' => 'sci', 'Sed0002949' => 'sed', 'Sed0004114' => 'sed', 'Sed0004306' => 'sed', 'Sed0006172' => 'sed', 'Sed0008413' => 'sed', 'Sed0013809' => 'sed', 'Sed0019556' => 'sed', 'SEGI_03570' => 'sgi', 'SEGI_07859' => 'sgi', 'SEGI_15042' => 'sgi', 'SEGI_16263' => 'sgi', 'SEGI_16552' => 'sgi', 'SEGI_24331' => 'sgi', 'SEGI_27316' => 'sgi', 'SEGI_29521' => 'sgi', 'SEGI_41342' => 'sgi', 'SGA_v2.0_scaffold27G11617' => 'sas', 'SGA_v2.0_scaffold316G48428' => 'sas', 'SGA_v2.0_scaffold49G18261' => 'sas', 'SGA_v2.0_scaffold7G03831' => 'sas', 'SGA_v2.0_scaffold93G28359' => 'sas', 'SHI02210' => 'shi', 'SHI06028' => 'shi', 'SHI06321' => 'shi', 'SMO111G0012' => 'smo', 'SMO228G0080' => 'smo', 'SMO356G0756' => 'smo', 'Solyc02g080620.3' => 'sly', 'Solyc06g074530.1' => 'sly', 'Solyc11g066890.1' => 'sly', 'Solyc11g072520.3' => 'sly', 'Sopen02g025330' => 'spe', 'Sopen06g031000' => 'spe', 'Sopen09g008240' => 'spe', 'Sopen09g025210' => 'spe', 'Sopen11g026600' => 'spe', 'Sopen11g030170' => 'spe', 'Sp1g10420' => 'spa', 'Sp3g06570' => 'spa', 'Sp4g10660' => 'spa', 'Sp5g16460' => 'spa', 'Sp6g22710' => 'spa', 'TAR365G0112' => 'tar', 'TAR369G0717' => 'tar', 'TAR374G0976' => 'tar', 'TAR623G1128' => 'tar', 'TAR626G1937' => 'tar', 'TAR627G0123' => 'tar', 'TAR628G0305' => 'tar', 'TAR636G1176' => 'tar', 'TAR636G2442' => 'tar', 'THA.LOC104800556' => 'tha', 'THA.LOC104809501' => 'tha', 'THA.LOC104815126' => 'tha', 'THA.LOC104815732' => 'tha', 'THA.LOC104823528' => 'tha', 'Thecc.02G365600' => 'tca', 'Thecc.06G222300' => 'tca', 'Thecc.09G261800' => 'tca', 'Thecc.09G291400' => 'tca', 'Thhalv10003028m.g' => 'esa', 'Thhalv10007886m.g' => 'esa', 'Thhalv10016085m.g' => 'esa', 'Thhalv10016681m.g' => 'esa', 'Thhalv10020951m.g' => 'esa', 'TPR.G15598' => 'tpr', 'TPR.G29305' => 'tpr', 'TPR.G32395' => 'tpr', 'TPR.G36998' => 'tpr', 'TPR.G4227' => 'tpr', 'TWI18G1433' => 'twi', 'TWI31G0755' => 'twi', 'TWI38G0912' => 'twi', 'TWI75G1097' => 'twi', 'TWI75G1619' => 'twi', 'TWI79G1336' => 'twi', 'unitig_0.g943' => 'ugi', 'unitig_0.g944' => 'ugi', 'unitig_22.g6646' => 'ugi', 'unitig_37.g12681' => 'ugi', 'unitig_8.g3290' => 'ugi', 'vmacro03278' => 'vma', 'vmacro12197' => 'vma', 'vmacro14478' => 'vma', 'vmacro15787' => 'vma', 'vmacro15789' => 'vma', 'vmacro15790' => 'vma', 'vmacro15806' => 'vma', 'vmacro22907' => 'vma', 'vmacro22908' => 'vma', 'vmacro22909' => 'vma', 'vmacro23108' => 'vma', 'VMungo0540G0540' => 'vmu', 'VMungo0540G2468' => 'vmu', 'VMungo1080G0390' => 'vmu', 'VMungo1080G1165' => 'vmu', 'VMungo1127G0170' => 'vmu', 'VMungo1127G2099' => 'vmu', 'VMungo1215G3013' => 'vmu', 'Zm00001eb013110' => 'zma', 'Zm00001eb084260' => 'zma', 'Zm00001eb096110' => 'zma', 'Zm00001eb217510' => 'zma', 'Zm00001eb322550' => 'zma', 'Zm00001eb390770' => 'zma', 'Zm00001eb397170' => 'zma', 'Zm00001eb404610' => 'zma', 'Zm00001eb421790' => 'zma' ) $gf_id = 'HOM05D000911' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000911' ) $data_identifier = 'HOM05D000911' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 16, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 5, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 6, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 8, 'nnu' => (int) 16, 'oeu' => (int) 8, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 5, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 16, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421790' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000911', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27780' => 'bna', 'A03p35380' => 'bna', 'A04p21160' => 'bna', 'A05p40570' => 'bna', 'A06p26900' => 'bna', 'A08p33230' => 'bna', 'A09p65960' => 'bna', 'A10p18290' => 'bna', 'Aa31LG1G12990' => 'aar', 'Aa31LG1G2980' => 'aar', 'Aa31LG4G14320' => 'aar', 'Aa31LG7G11800' => 'aar', 'Aa31sc36G50' => 'aar', 'Aa31sc36G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3721' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5459' => 'aag', 'Actinidia03028' => 'ach', 'Actinidia03753' => 'ach', 'Actinidia04187' => 'ach', 'Actinidia05509' => 'ach', 'Actinidia24180' => 'ach', 'Actinidia26906' => 'ach', 'Actinidia37097' => 'ach', 'Actinidia38249' => 'ach', 'Ah.01g003470' => 'amhyb', 'Ah.01g004580' => 'amhyb', 'Ah.01g014850' => 'amhyb', 'Ah.01g016830' => 'amhyb', 'Ah.14g088000' => 'amhyb', 'AL1G22980' => 'aly', 'AL3G18990' => 'aly', 'AL4G22440' => 'aly', 'AL4G33180' => 'aly', 'AL5G22920' => 'aly', 'AL6G33660' => 'aly', 'AL8G20720' => 'aly', 'Aqoxy1G00935' => 'aox', 'Aqoxy1G02094' => 'aox', 'Aqoxy2G01239' => 'aox', 'Aqoxy4G01870' => 'aox', 'Aqoxy7G00450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.36ZVTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71EM27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5D6C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH3WRE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3NCM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RIM768' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YB5YRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z36GDV' => 'arhy', 'AT1G08250' => 'ath', 'AT1G11790' => 'ath', 'AT2G27820' => 'ath', 'AT3G07630' => 'ath', 'AT3G44720' => 'ath', 'AT5G22630' => 'ath', 'ATR0693G304' => 'atr', 'ATR0794G109' => 'atr', 'ATR0820G120' => 'atr', 'ATR1159G064' => 'atr', 'Atru.chr10.2239' => 'acertr', 'Atru.chr3.3371' => 'acertr', 'Atru.chr6.3202' => 'acertr', 'AUR62006499' => 'cqu', 'AUR62012718' => 'cqu', 'AUR62021938' => 'cqu', 'AUR62023932' => 'cqu', 'AUR62025034' => 'cqu', 'AUR62025035' => 'cqu', 'AUR62038307' => 'cqu', 'AUR62043466' => 'cqu', 'BcaB02g10748' => 'bca', 'BcaB03g13231' => 'bca', 'BcaB03g14689' => 'bca', 'BcaB05g22716' => 'bca', 'BcaB06g28172' => 'bca', 'BcaB08g36413' => 'bca', 'BcaC01g02186' => 'bca', 'BcaC01g04272' => 'bca', 'BcaC02g08080' => 'bca', 'BcaC02g08227' => 'bca', 'BcaC03g13901' => 'bca', 'BcaC04g19593' => 'bca', 'BcaC04g20874' => 'bca', 'BcaC05g29557' => 'bca', 'BcaC06g35505' => 'bca', 'BcaC07g41954' => 'bca', 'BcaC07g41955' => 'bca', 'BcaC07g41956' => 'bca', 'BcaC07g42519' => 'bca', 'BcaC07g42520' => 'bca', 'BcaC07g42523' => 'bca', 'BcaC07g42524' => 'bca', 'BcaC07g42525' => 'bca', 'BcaC08g47480' => 'bca', 'BcaC08g47481' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00530' => 'bna', 'BolC2t07178H' => 'bol', 'BolC3t16567H' => 'bol', 'BolC4t27234H' => 'bol', 'BolC5t29728H' => 'bol', 'BolC5t34622H' => 'bol', 'BolC6t40321H' => 'bol', 'BolC7t42028H' => 'bol', 'BolC8t49125H' => 'bol', 'BolC8t52538H' => 'bol', 'BolC8t52539H' => 'bol', 'BolC9t56681H' => 'bol', 'BolC9t58266H' => 'bol', 'BolSC21t60294H' => 'bol', 'BraA02t05670Z' => 'bra', 'BraA03t12716Z' => 'bra', 'BraA04t17685Z' => 'bra', 'BraA05t22788Z' => 'bra', 'BraA06t24032Z' => 'bra', 'BraA06t25625Z' => 'bra', 'BraA07t27930Z' => 'bra', 'BraA08t35242Z' => 'bra', 'BraA09t38609Z' => 'bra', 'BraA10t43905Z' => 'bra', 'C02p11060' => 'bna', 'C03p42990' => 'bna', 'C03p67310' => 'bna', 'C04p56990' => 'bna', 'C04p58660' => 'bna', 'C05p09890' => 'bna', 'C05p59680' => 'bna', 'C06p19830' => 'bna', 'C06p53040' => 'bna', 'C07p15230' => 'bna', 'C08p50070' => 'bna', 'C08p50090' => 'bna', 'C09p38330' => 'bna', 'C09p53940' => 'bna', 'CAN.G1014.1' => 'can', 'CAN.G644.30' => 'can', 'CAN.G84.47' => 'can', 'CAN.G919.8' => 'can', 'CANSAT54G0113' => 'cansat', 'CANSAT54G1286' => 'cansat', 'CANSAT64G1020' => 'cansat', 'CARHR008080' => 'chi', 'CARHR008090' => 'chi', 'CARHR012130' => 'chi', 'CARHR038390' => 'chi', 'CARHR082330' => 'chi', 'CARHR120520' => 'chi', 'CARHR151470' => 'chi', 'CARHR190950' => 'chi', 'Carub.0001s0760' => 'cru', 'Carub.0001s1146' => 'cru', 'Carub.0003s0721' => 'cru', 'Carub.0004s0858' => 'cru', 'Carub.0005s1040' => 'cru', 'Carub.0006s2035' => 'cru', 'Carub.0015s0005' => 'cru', 'Ca_01607_v3' => 'car', 'Ca_01677_v3' => 'car', 'Ca_06087_v3' => 'car', 'Ca_19238_v3' => 'car', 'Ca_19373_v3' => 'car', 'Ca_21079_v3' => 'car', 'CBR_g54016' => 'cbr', 'CBR_g54018' => 'cbr', 'CBR_g54020' => 'cbr', 'Cc01_g09780' => 'ccan', 'Cc01_g11680' => 'ccan', 'Cc02_g15610' => 'ccan', 'Cc05_g04350' => 'ccan', 'Cc09_g01580' => 'ccan', 'CDE01G0795' => 'cde', 'CDE02G2024' => 'cde', 'CDE02G2260' => 'cde', 'CDE02G4561' => 'cde', 'CDE05G2733' => 'cde', 'CDE05G3422' => 'cde', 'CDE06G2003' => 'cde', 'CDE08G0576' => 'cde', 'CDE09G0048' => 'cde', 'CDE11G0805' => 'cde', 'Cfa003644' => 'cfa', 'Cfa006290' => 'cfa', 'Cfa010080' => 'cfa', 'Cfa011376' => 'cfa', 'Cfa011576' => 'cfa', 'Cfa011577' => 'cfa', 'Cfa014389' => 'cfa', 'Ciclev10006044m.g' => 'ccl', 'Ciclev10006954m.g' => 'ccl', 'Ciclev10015131m.g' => 'ccl', 'Ciclev10015580m.g' => 'ccl', 'Ciclev10028359m.g' => 'ccl', 'Ciclev10028573m.g' => 'ccl', 'CiPaw.03G159300' => 'cil', 'CiPaw.04G115100' => 'cil', 'CiPaw.09G092800' => 'cil', 'CiPaw.10G071800' => 'cil', 'CiPaw.13G105800' => 'cil', 'CiPaw.13G141000' => 'cil', 'CiPaw.14G103400' => 'cil', 'ClCG01G012700' => 'cla', 'ClCG01G012720' => 'cla', 'ClCG01G021920' => 'cla', 'ClCG02G008870' => 'cla', 'ClCG02G020840' => 'cla', 'ClCG02G021930' => 'cla', 'COL.COLO4_19302' => 'col', 'COL.COLO4_25262' => 'col', 'COL.COLO4_31788' => 'col', 'Cpa.g.c34684' => 'cpa', 'Cpa.g.c36520.1' => 'cpa', 'Cpa.g.c45626' => 'cpa', 'Cpa.g.sc121.17' => 'cpa', 'Cpa.g.sc13.22' => 'cpa', 'Cpa.g.sc87.88' => 'cpa', 'Cre06.g261800' => 'cre', 'CsaV3_1G014500' => 'csa', 'CsaV3_1G014510' => 'csa', 'CsaV3_2G034880' => 'csa', 'CsaV3_6G014760' => 'csa', 'CsaV3_6G021500' => 'csa', 'CsaV3_6G048980' => 'csa', 'CSS0002511' => 'camsi', 'CSS0007556' => 'camsi', 'CSS0008532' => 'camsi', 'CSS0009709' => 'camsi', 'CSS0010486' => 'camsi', 'CSS0016768' => 'camsi', 'CSS0023512' => 'camsi', 'CSS0025341' => 'camsi', 'CSS0027999' => 'camsi', 'CSS0028944' => 'camsi', 'CSS0032292' => 'camsi', 'CSS0032464' => 'camsi', 'CSS0037153' => 'camsi', 'CSS0039256' => 'camsi', 'CSS0048392' => 'camsi', 'CSS0050458' => 'camsi', 'DCAR_004224' => 'dca', 'DCAR_006147' => 'dca', 'DCAR_006465' => 'dca', 'DCAR_008159' => 'dca', 'DCAR_012164' => 'dca', 'DCAR_019764' => 'dca', 'Dinv05418' => 'din', 'Dinv10839' => 'din', 'Dinv12521' => 'din', 'Dinv13900' => 'din', 'Dinv29426' => 'din', 'Duzib150G0263' => 'dzi', 'Duzib168G1178' => 'dzi', 'Duzib168G1924' => 'dzi', 'Duzib170G0299' => 'dzi', 'Duzib170G0813' => 'dzi', 'Duzib235G1128' => 'dzi', 'Duzib248G1060' => 'dzi', 'ECA232G1910' => 'eca', 'ECA233G4621' => 'eca', 'ECA238G1216' => 'eca', 'ECA238G1784' => 'eca', 'ECA248G1242' => 'eca', 'EL10Ac8g20071' => 'bvu', 'EL10Ac9g21086' => 'bvu', 'EL10Ac9g22407' => 'bvu', 'EL10Ac9g22412' => 'bvu', 'Eucgr.A01119' => 'egr', 'Eucgr.E04043' => 'egr', 'Eucgr.J00428' => 'egr', 'Eucgr.J00958' => 'egr', 'FAN11G3091' => 'fan', 'FAN11G3651' => 'fan', 'FAN16G2566' => 'fan', 'FAN21G3155' => 'fan', 'FAN21G3400' => 'fan', 'FAN21G3543' => 'fan', 'FAN25G0234' => 'fan', 'FAN25G1422' => 'fan', 'FAN25G3392' => 'fan', 'FvH4_3g01940' => 'fve', 'FvH4_3g29870' => 'fve', 'FvH4_3g33680' => 'fve', 'Glyma.09G004200' => 'gma', 'Glyma.11G151288' => 'gma', 'Glyma.11G189100' => 'gma', 'Glyma.12G072500' => 'gma', 'Glyma.12G085500' => 'gma', 'Glyma.12G181800' => 'gma', 'Glyma.12G193000' => 'gma', 'Glyma.13G309300' => 'gma', 'Glyma.13G319000' => 'gma', 'Glyma.17G012600' => 'gma', 'Gohir.A06G148600' => 'ghi', 'Gohir.A07G115800' => 'ghi', 'Gohir.A08G003600' => 'ghi', 'Gohir.A09G093300' => 'ghi', 'Gohir.A09G105400' => 'ghi', 'Gohir.A09G105500' => 'ghi', 'Gohir.D06G154600' => 'ghi', 'Gohir.D07G120200' => 'ghi', 'Gohir.D08G013900' => 'ghi', 'Gohir.D09G093100' => 'ghi', 'Gohir.D09G102200' => 'ghi', 'Gohir.D09G102300' => 'ghi', 'Gorai.001G129400' => 'gra', 'Gorai.004G008200' => 'gra', 'Gorai.006G109800' => 'gra', 'Gorai.006G119500' => 'gra', 'Gorai.006G121300' => 'gra', 'Gorai.010G180700' => 'gra', 'GSVIVG01012716001' => 'vvi', 'GSVIVG01025118001' => 'vvi', 'GSVIVG01030439001' => 'vvi', 'GSVIVG01031397001' => 'vvi', 'HanXRQChr01g0004201' => 'han', 'HanXRQChr02g0054941' => 'han', 'HanXRQChr05g0141811' => 'han', 'HanXRQChr07g0197751' => 'han', 'HanXRQChr11g0346691' => 'han', 'HanXRQChr13g0396971' => 'han', 'HanXRQChr14g0432951' => 'han', 'HanXRQChr14g0452001' => 'han', 'HanXRQChr15g0496681' => 'han', 'HanXRQChr17g0557491' => 'han', 'HanXRQChr17g0557501' => 'han', 'Haze_06809' => 'cav', 'Haze_12852' => 'cav', 'Haze_15850' => 'cav', 'Haze_23446' => 'cav', 'Haze_23942' => 'cav', 'Haze_23943' => 'cav', 'Hma1.2p1_0091F.1_g046450' => 'hma', 'Hma1.2p1_0128F.1_g059910' => 'hma', 'Hma1.2p1_0249F.1_g102260' => 'hma', 'Hma1.2p1_0453F.1_g156190' => 'hma', 'Hma1.2p1_0695F.1_g204380' => 'hma', 'Hma1.2p1_0749F.1_g212650' => 'hma', 'Hma1.2p1_2156F.1_g315420' => 'hma', 'Hma1.2p1_2686F.1_g326940' => 'hma', 'HPP92_006428' => 'vpl', 'HPP92_012069' => 'vpl', 'HPP92_014129' => 'vpl', 'HPP92_014133' => 'vpl', 'HPP92_017315' => 'vpl', 'HPP92_026445' => 'vpl', 'HPP92_026446' => 'vpl', 'Hund00774' => 'sun', 'Hund07682' => 'sun', 'Hund21413' => 'sun', 'Hund23462' => 'sun', 'Hund23463' => 'sun', 'Lalb_Chr03g0027911' => 'lal', 'Lalb_Chr13g0304271' => 'lal', 'Lalb_Chr19g0137471' => 'lal', 'Lalb_Chr22g0350651' => 'lal', 'Lalb_Chr24g0395151' => 'lal', 'Lj1A1231T40' => 'lonja', 'Lj1A221T48' => 'lonja', 'Lj1C924T12' => 'lonja', 'Lj2C993G6' => 'lonja', 'Lj3g0005790' => 'lja', 'Lj3g0015432' => 'lja', 'Lj3g0017722' => 'lja', 'Lj3g0018497' => 'lja', 'Lj4g0025071' => 'lja', 'Lsat_1_v5_gn_1_129680' => 'lsa', 'Lsat_1_v5_gn_2_25321' => 'lsa', 'Lsat_1_v5_gn_2_95461' => 'lsa', 'Lsat_1_v5_gn_4_159620' => 'lsa', 'Lsat_1_v5_gn_6_41301' => 'lsa', 'Lsat_1_v5_gn_6_74660' => 'lsa', 'Lsat_1_v5_gn_7_11520' => 'lsa', 'Lsat_1_v5_gn_9_67680' => 'lsa', 'Manes.04G008300' => 'mes', 'Manes.04G008400' => 'mes', 'Manes.04G026500' => 'mes', 'Manes.10G135300' => 'mes', 'Manes.11G157300' => 'mes', 'Manes.12G074000' => 'mes', 'Manes.16G006200' => 'mes', 'Manes.17G026400' => 'mes', 'Mapoly0024s0086' => 'mpo', 'Mapoly0024s0087' => 'mpo', 'Mapoly0071s0057' => 'mpo', 'Mapoly0204s0012' => 'mpo', 'MBI04_g37681_MAGBIO' => 'mbi', 'MBI05_g17779_MAGBIO' => 'mbi', 'MBI12_g31184_MAGBIO' => 'mbi', 'MBI17_g11083_MAGBIO' => 'mbi', 'MBI18_g03883_MAGBIO' => 'mbi', 'MBI18_g28940_MAGBIO' => 'mbi', 'MCO01G690' => 'mco', 'MD03G1109900' => 'mdo', 'MD03G1134800' => 'mdo', 'MD05G1348000' => 'mdo', 'MD10G1322400' => 'mdo', 'MD11G1123300' => 'mdo', 'MD11G1157600' => 'mdo', 'Medtr2g084875' => 'mtr', 'Medtr2g088130' => 'mtr', 'Medtr4g055310' => 'mtr', 'Medtr4g061070' => 'mtr', 'Medtr4g132250' => 'mtr', 'MELO3C004795.2' => 'cme', 'MELO3C004797.2' => 'cme', 'MELO3C007396.2' => 'cme', 'MELO3C019277.2' => 'cme', 'MELO3C021449.2' => 'cme', 'MELO3C025736.2' => 'cme', 'Migut.D02175' => 'egut', 'Migut.H01573' => 'egut', 'Migut.M01327' => 'egut', 'Migut.N02513' => 'egut', 'MSTRG.14638' => 'ama', 'MSTRG.18632' => 'ama', 'MSTRG.7203' => 'ama', 'Nitab4.5_0000533g0140' => 'nta', 'Nitab4.5_0000888g0150' => 'nta', 'Nitab4.5_0001453g0040' => 'nta', 'Nitab4.5_0002827g0090' => 'nta', 'Nitab4.5_0003082g0040' => 'nta', 'Nitab4.5_0007799g0040' => 'nta', 'Nitab4.5_0008983g0010' => 'nta', 'Nitab4.5_0009017g0020' => 'nta', 'Nn1g02132' => 'nnu', 'Nn1g03492' => 'nnu', 'Nn1g03493' => 'nnu', 'Nn1g03494' => 'nnu', 'Nn1g07164' => 'nnu', 'Nn1g07291' => 'nnu', 'Nn2g10655' => 'nnu', 'Nn2g11652' => 'nnu', 'Nn2g14008' => 'nnu', 'Nn3g17476' => 'nnu', 'Nn3g17477' => 'nnu', 'Nn4g22370' => 'nnu', 'Nn4g25255' => 'nnu', 'Nn5g27755' => 'nnu', 'Nn6g34260' => 'nnu', 'Nn6g35041' => 'nnu', 'Oeu005924.1' => 'oeu', 'Oeu008383.1' => 'oeu', 'Oeu014928.1' => 'oeu', 'Oeu019889.1' => 'oeu', 'Oeu022271.1' => 'oeu', 'Oeu025271.1' => 'oeu', 'Oeu036302.1' => 'oeu', 'Oeu044100.1' => 'oeu', 'Os01g0528300' => 'osa', 'Os03g0286200' => 'osa', 'Os04g0406600' => 'osa', 'Os07g0512000' => 'osa', 'Os07g0694600' => 'osa', 'Os08g0411000' => 'osa', 'Os09g0565700' => 'osa', 'Os09g0566050' => 'osa', 'Os10g0523700' => 'osa', 'Peaxi162Scf00002g00514' => 'pax', 'Peaxi162Scf00047g01817' => 'pax', 'Peaxi162Scf00114g00001' => 'pax', 'Peaxi162Scf00147g00613' => 'pax', 'Peaxi162Scf00389g00425' => 'pax', 'PGR042G1139' => 'pgr', 'PGR042G3273' => 'pgr', 'PGR102G2180' => 'pgr', 'PGR119G0234' => 'pgr', 'PGR119G0668' => 'pgr', 'PGSC0003DMG400007122' => 'stu', 'PGSC0003DMG400016478' => 'stu', 'PGSC0003DMG400025374' => 'stu', 'PGSC0003DMG400026536' => 'stu', 'Phvul.003G079600' => 'pvu', 'Phvul.005G115600' => 'pvu', 'Phvul.005G127100' => 'pvu', 'Phvul.006G149500' => 'pvu', 'Phvul.006G149600' => 'pvu', 'Phvul.011G071800' => 'pvu', 'Phvul.011G090400' => 'pvu', 'Potri.004G013400' => 'ptr', 'Potri.004G188100' => 'ptr', 'Potri.008G195500' => 'ptr', 'Potri.009G148800' => 'ptr', 'Potri.011G004700' => 'ptr', 'Pp3c17_22810' => 'ppa', 'Pp3c18_4480' => 'ppa', 'Pp3c19_13030' => 'ppa', 'Pp3c1_33620' => 'ppa', 'Pp3c2_9380' => 'ppa', 'PRCOL_00001023' => 'pco', 'Prupe.3G216300' => 'ppe', 'Prupe.4G019500' => 'ppe', 'Prupe.6G092500' => 'ppe', 'Prupe.6G119200' => 'ppe', 'Psat0s1945g0080' => 'psa', 'Psat0s4167g0040' => 'psa', 'Psat1g185800' => 'psa', 'Psat4g006440' => 'psa', 'Psat4g006480' => 'psa', 'Psat4g168120' => 'psa', 'Psat5g255680' => 'psa', 'Psat5g261760' => 'psa', 'Psat7g222120' => 'psa', 'PSO063G7252' => 'pso', 'PSO170G4778' => 'pso', 'PSO210G2249' => 'pso', 'PSO339G2411' => 'pso', 'PSO339G2457' => 'pso', 'PSO339G2854' => 'pso', 'PSO339G4288' => 'pso', 'PSO339G4615' => 'pso', 'PSO384G2796' => 'pso', 'PSO384G2940' => 'pso', 'PSO384G4227' => 'pso', 'PSO478G1425' => 'pso', 'PSO541G3863' => 'pso', 'PSO675G0507' => 'pso', 'PSO782G0338' => 'pso', 'PSO832G0644' => 'pso', 'QL01p013664' => 'qlo', 'QL01p036598' => 'qlo', 'QL05p072984' => 'qlo', 'QL08p005768' => 'qlo', 'QL08p032743' => 'qlo', 'QL93p0073_0439' => 'qlo', 'QL93p0073_0444' => 'qlo', 'RcHm_v2.0_Chr5g0002851' => 'rch', 'RcHm_v2.0_Chr5g0055201' => 'rch', 'RcHm_v2.0_Chr5g0061191' => 'rch', 'RcHm_v2.0_Chr7g0203231' => 'rch', 'Rhsim01G0208100' => 'rsi', 'Rhsim01G0208200' => 'rsi', 'Rhsim02G0106500' => 'rsi', 'Rhsim03G0107900' => 'rsi', 'Rhsim06G0163400' => 'rsi', 'Rhsim13G0105200' => 'rsi', 'Sabra04G0006300' => 'sbr', 'Sabra04G0127000' => 'sbr', 'Sabra08G0148700' => 'sbr', 'Sabra09G0117400' => 'sbr', 'SalBow1G3326' => 'sbo', 'SalBow3G3228' => 'sbo', 'SalBow6G1634' => 'sbo', 'SalBow6G3603' => 'sbo', 'SalBow6G5266' => 'sbo', 'SalBow7G2265' => 'sbo', 'SalBow8G0850' => 'sbo', 'SalBow8G2592' => 'sbo', 'Sc05g0009240' => 'sci', 'Sc12g0002300' => 'sci', 'Sc21g0000100' => 'sci', 'Sc21g0004720' => 'sci', 'Sed0002949' => 'sed', 'Sed0004114' => 'sed', 'Sed0004306' => 'sed', 'Sed0006172' => 'sed', 'Sed0008413' => 'sed', 'Sed0013809' => 'sed', 'Sed0019556' => 'sed', 'SEGI_03570' => 'sgi', 'SEGI_07859' => 'sgi', 'SEGI_15042' => 'sgi', 'SEGI_16263' => 'sgi', 'SEGI_16552' => 'sgi', 'SEGI_24331' => 'sgi', 'SEGI_27316' => 'sgi', 'SEGI_29521' => 'sgi', 'SEGI_41342' => 'sgi', 'SGA_v2.0_scaffold27G11617' => 'sas', 'SGA_v2.0_scaffold316G48428' => 'sas', 'SGA_v2.0_scaffold49G18261' => 'sas', 'SGA_v2.0_scaffold7G03831' => 'sas', 'SGA_v2.0_scaffold93G28359' => 'sas', 'SHI02210' => 'shi', 'SHI06028' => 'shi', 'SHI06321' => 'shi', 'SMO111G0012' => 'smo', 'SMO228G0080' => 'smo', 'SMO356G0756' => 'smo', 'Solyc02g080620.3' => 'sly', 'Solyc06g074530.1' => 'sly', 'Solyc11g066890.1' => 'sly', 'Solyc11g072520.3' => 'sly', 'Sopen02g025330' => 'spe', 'Sopen06g031000' => 'spe', 'Sopen09g008240' => 'spe', 'Sopen09g025210' => 'spe', 'Sopen11g026600' => 'spe', 'Sopen11g030170' => 'spe', 'Sp1g10420' => 'spa', 'Sp3g06570' => 'spa', 'Sp4g10660' => 'spa', 'Sp5g16460' => 'spa', 'Sp6g22710' => 'spa', 'TAR365G0112' => 'tar', 'TAR369G0717' => 'tar', 'TAR374G0976' => 'tar', 'TAR623G1128' => 'tar', 'TAR626G1937' => 'tar', 'TAR627G0123' => 'tar', 'TAR628G0305' => 'tar', 'TAR636G1176' => 'tar', 'TAR636G2442' => 'tar', 'THA.LOC104800556' => 'tha', 'THA.LOC104809501' => 'tha', 'THA.LOC104815126' => 'tha', 'THA.LOC104815732' => 'tha', 'THA.LOC104823528' => 'tha', 'Thecc.02G365600' => 'tca', 'Thecc.06G222300' => 'tca', 'Thecc.09G261800' => 'tca', 'Thecc.09G291400' => 'tca', 'Thhalv10003028m.g' => 'esa', 'Thhalv10007886m.g' => 'esa', 'Thhalv10016085m.g' => 'esa', 'Thhalv10016681m.g' => 'esa', 'Thhalv10020951m.g' => 'esa', 'TPR.G15598' => 'tpr', 'TPR.G29305' => 'tpr', 'TPR.G32395' => 'tpr', 'TPR.G36998' => 'tpr', 'TPR.G4227' => 'tpr', 'TWI18G1433' => 'twi', 'TWI31G0755' => 'twi', 'TWI38G0912' => 'twi', 'TWI75G1097' => 'twi', 'TWI75G1619' => 'twi', 'TWI79G1336' => 'twi', 'unitig_0.g943' => 'ugi', 'unitig_0.g944' => 'ugi', 'unitig_22.g6646' => 'ugi', 'unitig_37.g12681' => 'ugi', 'unitig_8.g3290' => 'ugi', 'vmacro03278' => 'vma', 'vmacro12197' => 'vma', 'vmacro14478' => 'vma', 'vmacro15787' => 'vma', 'vmacro15789' => 'vma', 'vmacro15790' => 'vma', 'vmacro15806' => 'vma', 'vmacro22907' => 'vma', 'vmacro22908' => 'vma', 'vmacro22909' => 'vma', 'vmacro23108' => 'vma', 'VMungo0540G0540' => 'vmu', 'VMungo0540G2468' => 'vmu', 'VMungo1080G0390' => 'vmu', 'VMungo1080G1165' => 'vmu', 'VMungo1127G0170' => 'vmu', 'VMungo1127G2099' => 'vmu', 'VMungo1215G3013' => 'vmu', 'Zm00001eb013110' => 'zma', 'Zm00001eb084260' => 'zma', 'Zm00001eb096110' => 'zma', 'Zm00001eb217510' => 'zma', 'Zm00001eb322550' => 'zma', 'Zm00001eb390770' => 'zma', 'Zm00001eb397170' => 'zma', 'Zm00001eb404610' => 'zma', 'Zm00001eb421790' => 'zma' ), 'gf_id' => 'HOM05D000911', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000911' ), 'data_identifier' => 'HOM05D000911', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000911', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27780' => 'bna', 'A03p35380' => 'bna', 'A04p21160' => 'bna', 'A05p40570' => 'bna', 'A06p26900' => 'bna', 'A08p33230' => 'bna', 'A09p65960' => 'bna', 'A10p18290' => 'bna', 'Aa31LG1G12990' => 'aar', 'Aa31LG1G2980' => 'aar', 'Aa31LG4G14320' => 'aar', 'Aa31LG7G11800' => 'aar', 'Aa31sc36G50' => 'aar', 'Aa31sc36G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3721' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5459' => 'aag', 'Actinidia03028' => 'ach', 'Actinidia03753' => 'ach', 'Actinidia04187' => 'ach', 'Actinidia05509' => 'ach', 'Actinidia24180' => 'ach', 'Actinidia26906' => 'ach', 'Actinidia37097' => 'ach', 'Actinidia38249' => 'ach', 'Ah.01g003470' => 'amhyb', 'Ah.01g004580' => 'amhyb', 'Ah.01g014850' => 'amhyb', 'Ah.01g016830' => 'amhyb', 'Ah.14g088000' => 'amhyb', 'AL1G22980' => 'aly', 'AL3G18990' => 'aly', 'AL4G22440' => 'aly', 'AL4G33180' => 'aly', 'AL5G22920' => 'aly', 'AL6G33660' => 'aly', 'AL8G20720' => 'aly', 'Aqoxy1G00935' => 'aox', 'Aqoxy1G02094' => 'aox', 'Aqoxy2G01239' => 'aox', 'Aqoxy4G01870' => 'aox', 'Aqoxy7G00450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.36ZVTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71EM27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5D6C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH3WRE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3NCM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RIM768' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YB5YRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z36GDV' => 'arhy', 'AT1G08250' => 'ath', 'AT1G11790' => 'ath', 'AT2G27820' => 'ath', 'AT3G07630' => 'ath', 'AT3G44720' => 'ath', 'AT5G22630' => 'ath', 'ATR0693G304' => 'atr', 'ATR0794G109' => 'atr', 'ATR0820G120' => 'atr', 'ATR1159G064' => 'atr', 'Atru.chr10.2239' => 'acertr', 'Atru.chr3.3371' => 'acertr', 'Atru.chr6.3202' => 'acertr', 'AUR62006499' => 'cqu', 'AUR62012718' => 'cqu', 'AUR62021938' => 'cqu', 'AUR62023932' => 'cqu', 'AUR62025034' => 'cqu', 'AUR62025035' => 'cqu', 'AUR62038307' => 'cqu', 'AUR62043466' => 'cqu', 'BcaB02g10748' => 'bca', 'BcaB03g13231' => 'bca', 'BcaB03g14689' => 'bca', 'BcaB05g22716' => 'bca', 'BcaB06g28172' => 'bca', 'BcaB08g36413' => 'bca', 'BcaC01g02186' => 'bca', 'BcaC01g04272' => 'bca', 'BcaC02g08080' => 'bca', 'BcaC02g08227' => 'bca', 'BcaC03g13901' => 'bca', 'BcaC04g19593' => 'bca', 'BcaC04g20874' => 'bca', 'BcaC05g29557' => 'bca', 'BcaC06g35505' => 'bca', 'BcaC07g41954' => 'bca', 'BcaC07g41955' => 'bca', 'BcaC07g41956' => 'bca', 'BcaC07g42519' => 'bca', 'BcaC07g42520' => 'bca', 'BcaC07g42523' => 'bca', 'BcaC07g42524' => 'bca', 'BcaC07g42525' => 'bca', 'BcaC08g47480' => 'bca', 'BcaC08g47481' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00530' => 'bna', 'BolC2t07178H' => 'bol', 'BolC3t16567H' => 'bol', 'BolC4t27234H' => 'bol', 'BolC5t29728H' => 'bol', 'BolC5t34622H' => 'bol', 'BolC6t40321H' => 'bol', 'BolC7t42028H' => 'bol', 'BolC8t49125H' => 'bol', 'BolC8t52538H' => 'bol', 'BolC8t52539H' => 'bol', 'BolC9t56681H' => 'bol', 'BolC9t58266H' => 'bol', 'BolSC21t60294H' => 'bol', 'BraA02t05670Z' => 'bra', 'BraA03t12716Z' => 'bra', 'BraA04t17685Z' => 'bra', 'BraA05t22788Z' => 'bra', 'BraA06t24032Z' => 'bra', 'BraA06t25625Z' => 'bra', 'BraA07t27930Z' => 'bra', 'BraA08t35242Z' => 'bra', 'BraA09t38609Z' => 'bra', 'BraA10t43905Z' => 'bra', 'C02p11060' => 'bna', 'C03p42990' => 'bna', 'C03p67310' => 'bna', 'C04p56990' => 'bna', 'C04p58660' => 'bna', 'C05p09890' => 'bna', 'C05p59680' => 'bna', 'C06p19830' => 'bna', 'C06p53040' => 'bna', 'C07p15230' => 'bna', 'C08p50070' => 'bna', 'C08p50090' => 'bna', 'C09p38330' => 'bna', 'C09p53940' => 'bna', 'CAN.G1014.1' => 'can', 'CAN.G644.30' => 'can', 'CAN.G84.47' => 'can', 'CAN.G919.8' => 'can', 'CANSAT54G0113' => 'cansat', 'CANSAT54G1286' => 'cansat', 'CANSAT64G1020' => 'cansat', 'CARHR008080' => 'chi', 'CARHR008090' => 'chi', 'CARHR012130' => 'chi', 'CARHR038390' => 'chi', 'CARHR082330' => 'chi', 'CARHR120520' => 'chi', 'CARHR151470' => 'chi', 'CARHR190950' => 'chi', 'Carub.0001s0760' => 'cru', 'Carub.0001s1146' => 'cru', 'Carub.0003s0721' => 'cru', 'Carub.0004s0858' => 'cru', 'Carub.0005s1040' => 'cru', 'Carub.0006s2035' => 'cru', 'Carub.0015s0005' => 'cru', 'Ca_01607_v3' => 'car', 'Ca_01677_v3' => 'car', 'Ca_06087_v3' => 'car', 'Ca_19238_v3' => 'car', 'Ca_19373_v3' => 'car', 'Ca_21079_v3' => 'car', 'CBR_g54016' => 'cbr', 'CBR_g54018' => 'cbr', 'CBR_g54020' => 'cbr', 'Cc01_g09780' => 'ccan', 'Cc01_g11680' => 'ccan', 'Cc02_g15610' => 'ccan', 'Cc05_g04350' => 'ccan', 'Cc09_g01580' => 'ccan', 'CDE01G0795' => 'cde', 'CDE02G2024' => 'cde', 'CDE02G2260' => 'cde', 'CDE02G4561' => 'cde', 'CDE05G2733' => 'cde', 'CDE05G3422' => 'cde', 'CDE06G2003' => 'cde', 'CDE08G0576' => 'cde', 'CDE09G0048' => 'cde', 'CDE11G0805' => 'cde', 'Cfa003644' => 'cfa', 'Cfa006290' => 'cfa', 'Cfa010080' => 'cfa', 'Cfa011376' => 'cfa', 'Cfa011576' => 'cfa', 'Cfa011577' => 'cfa', 'Cfa014389' => 'cfa', 'Ciclev10006044m.g' => 'ccl', 'Ciclev10006954m.g' => 'ccl', 'Ciclev10015131m.g' => 'ccl', 'Ciclev10015580m.g' => 'ccl', 'Ciclev10028359m.g' => 'ccl', 'Ciclev10028573m.g' => 'ccl', 'CiPaw.03G159300' => 'cil', 'CiPaw.04G115100' => 'cil', 'CiPaw.09G092800' => 'cil', 'CiPaw.10G071800' => 'cil', 'CiPaw.13G105800' => 'cil', 'CiPaw.13G141000' => 'cil', 'CiPaw.14G103400' => 'cil', 'ClCG01G012700' => 'cla', 'ClCG01G012720' => 'cla', 'ClCG01G021920' => 'cla', 'ClCG02G008870' => 'cla', 'ClCG02G020840' => 'cla', 'ClCG02G021930' => 'cla', 'COL.COLO4_19302' => 'col', 'COL.COLO4_25262' => 'col', 'COL.COLO4_31788' => 'col', 'Cpa.g.c34684' => 'cpa', 'Cpa.g.c36520.1' => 'cpa', 'Cpa.g.c45626' => 'cpa', 'Cpa.g.sc121.17' => 'cpa', 'Cpa.g.sc13.22' => 'cpa', 'Cpa.g.sc87.88' => 'cpa', 'Cre06.g261800' => 'cre', 'CsaV3_1G014500' => 'csa', 'CsaV3_1G014510' => 'csa', 'CsaV3_2G034880' => 'csa', 'CsaV3_6G014760' => 'csa', 'CsaV3_6G021500' => 'csa', 'CsaV3_6G048980' => 'csa', 'CSS0002511' => 'camsi', 'CSS0007556' => 'camsi', 'CSS0008532' => 'camsi', 'CSS0009709' => 'camsi', 'CSS0010486' => 'camsi', 'CSS0016768' => 'camsi', 'CSS0023512' => 'camsi', 'CSS0025341' => 'camsi', 'CSS0027999' => 'camsi', 'CSS0028944' => 'camsi', 'CSS0032292' => 'camsi', 'CSS0032464' => 'camsi', 'CSS0037153' => 'camsi', 'CSS0039256' => 'camsi', 'CSS0048392' => 'camsi', 'CSS0050458' => 'camsi', 'DCAR_004224' => 'dca', 'DCAR_006147' => 'dca', 'DCAR_006465' => 'dca', 'DCAR_008159' => 'dca', 'DCAR_012164' => 'dca', 'DCAR_019764' => 'dca', 'Dinv05418' => 'din', 'Dinv10839' => 'din', 'Dinv12521' => 'din', 'Dinv13900' => 'din', 'Dinv29426' => 'din', 'Duzib150G0263' => 'dzi', 'Duzib168G1178' => 'dzi', 'Duzib168G1924' => 'dzi', 'Duzib170G0299' => 'dzi', 'Duzib170G0813' => 'dzi', 'Duzib235G1128' => 'dzi', 'Duzib248G1060' => 'dzi', 'ECA232G1910' => 'eca', 'ECA233G4621' => 'eca', 'ECA238G1216' => 'eca', 'ECA238G1784' => 'eca', 'ECA248G1242' => 'eca', 'EL10Ac8g20071' => 'bvu', 'EL10Ac9g21086' => 'bvu', 'EL10Ac9g22407' => 'bvu', 'EL10Ac9g22412' => 'bvu', 'Eucgr.A01119' => 'egr', 'Eucgr.E04043' => 'egr', 'Eucgr.J00428' => 'egr', 'Eucgr.J00958' => 'egr', 'FAN11G3091' => 'fan', 'FAN11G3651' => 'fan', 'FAN16G2566' => 'fan', 'FAN21G3155' => 'fan', 'FAN21G3400' => 'fan', 'FAN21G3543' => 'fan', 'FAN25G0234' => 'fan', 'FAN25G1422' => 'fan', 'FAN25G3392' => 'fan', 'FvH4_3g01940' => 'fve', 'FvH4_3g29870' => 'fve', 'FvH4_3g33680' => 'fve', 'Glyma.09G004200' => 'gma', 'Glyma.11G151288' => 'gma', 'Glyma.11G189100' => 'gma', 'Glyma.12G072500' => 'gma', 'Glyma.12G085500' => 'gma', 'Glyma.12G181800' => 'gma', 'Glyma.12G193000' => 'gma', 'Glyma.13G309300' => 'gma', 'Glyma.13G319000' => 'gma', 'Glyma.17G012600' => 'gma', 'Gohir.A06G148600' => 'ghi', 'Gohir.A07G115800' => 'ghi', 'Gohir.A08G003600' => 'ghi', 'Gohir.A09G093300' => 'ghi', 'Gohir.A09G105400' => 'ghi', 'Gohir.A09G105500' => 'ghi', 'Gohir.D06G154600' => 'ghi', 'Gohir.D07G120200' => 'ghi', 'Gohir.D08G013900' => 'ghi', 'Gohir.D09G093100' => 'ghi', 'Gohir.D09G102200' => 'ghi', 'Gohir.D09G102300' => 'ghi', 'Gorai.001G129400' => 'gra', 'Gorai.004G008200' => 'gra', 'Gorai.006G109800' => 'gra', 'Gorai.006G119500' => 'gra', 'Gorai.006G121300' => 'gra', 'Gorai.010G180700' => 'gra', 'GSVIVG01012716001' => 'vvi', 'GSVIVG01025118001' => 'vvi', 'GSVIVG01030439001' => 'vvi', 'GSVIVG01031397001' => 'vvi', 'HanXRQChr01g0004201' => 'han', 'HanXRQChr02g0054941' => 'han', 'HanXRQChr05g0141811' => 'han', 'HanXRQChr07g0197751' => 'han', 'HanXRQChr11g0346691' => 'han', 'HanXRQChr13g0396971' => 'han', 'HanXRQChr14g0432951' => 'han', 'HanXRQChr14g0452001' => 'han', 'HanXRQChr15g0496681' => 'han', 'HanXRQChr17g0557491' => 'han', 'HanXRQChr17g0557501' => 'han', 'Haze_06809' => 'cav', 'Haze_12852' => 'cav', 'Haze_15850' => 'cav', 'Haze_23446' => 'cav', 'Haze_23942' => 'cav', 'Haze_23943' => 'cav', 'Hma1.2p1_0091F.1_g046450' => 'hma', 'Hma1.2p1_0128F.1_g059910' => 'hma', 'Hma1.2p1_0249F.1_g102260' => 'hma', 'Hma1.2p1_0453F.1_g156190' => 'hma', 'Hma1.2p1_0695F.1_g204380' => 'hma', 'Hma1.2p1_0749F.1_g212650' => 'hma', 'Hma1.2p1_2156F.1_g315420' => 'hma', 'Hma1.2p1_2686F.1_g326940' => 'hma', 'HPP92_006428' => 'vpl', 'HPP92_012069' => 'vpl', 'HPP92_014129' => 'vpl', 'HPP92_014133' => 'vpl', 'HPP92_017315' => 'vpl', 'HPP92_026445' => 'vpl', 'HPP92_026446' => 'vpl', 'Hund00774' => 'sun', 'Hund07682' => 'sun', 'Hund21413' => 'sun', 'Hund23462' => 'sun', 'Hund23463' => 'sun', 'Lalb_Chr03g0027911' => 'lal', 'Lalb_Chr13g0304271' => 'lal', 'Lalb_Chr19g0137471' => 'lal', 'Lalb_Chr22g0350651' => 'lal', 'Lalb_Chr24g0395151' => 'lal', 'Lj1A1231T40' => 'lonja', 'Lj1A221T48' => 'lonja', 'Lj1C924T12' => 'lonja', 'Lj2C993G6' => 'lonja', 'Lj3g0005790' => 'lja', 'Lj3g0015432' => 'lja', 'Lj3g0017722' => 'lja', 'Lj3g0018497' => 'lja', 'Lj4g0025071' => 'lja', 'Lsat_1_v5_gn_1_129680' => 'lsa', 'Lsat_1_v5_gn_2_25321' => 'lsa', 'Lsat_1_v5_gn_2_95461' => 'lsa', 'Lsat_1_v5_gn_4_159620' => 'lsa', 'Lsat_1_v5_gn_6_41301' => 'lsa', 'Lsat_1_v5_gn_6_74660' => 'lsa', 'Lsat_1_v5_gn_7_11520' => 'lsa', 'Lsat_1_v5_gn_9_67680' => 'lsa', 'Manes.04G008300' => 'mes', 'Manes.04G008400' => 'mes', 'Manes.04G026500' => 'mes', 'Manes.10G135300' => 'mes', 'Manes.11G157300' => 'mes', 'Manes.12G074000' => 'mes', 'Manes.16G006200' => 'mes', 'Manes.17G026400' => 'mes', 'Mapoly0024s0086' => 'mpo', 'Mapoly0024s0087' => 'mpo', 'Mapoly0071s0057' => 'mpo', 'Mapoly0204s0012' => 'mpo', 'MBI04_g37681_MAGBIO' => 'mbi', 'MBI05_g17779_MAGBIO' => 'mbi', 'MBI12_g31184_MAGBIO' => 'mbi', 'MBI17_g11083_MAGBIO' => 'mbi', 'MBI18_g03883_MAGBIO' => 'mbi', 'MBI18_g28940_MAGBIO' => 'mbi', 'MCO01G690' => 'mco', 'MD03G1109900' => 'mdo', 'MD03G1134800' => 'mdo', 'MD05G1348000' => 'mdo', 'MD10G1322400' => 'mdo', 'MD11G1123300' => 'mdo', 'MD11G1157600' => 'mdo', 'Medtr2g084875' => 'mtr', 'Medtr2g088130' => 'mtr', 'Medtr4g055310' => 'mtr', 'Medtr4g061070' => 'mtr', 'Medtr4g132250' => 'mtr', 'MELO3C004795.2' => 'cme', 'MELO3C004797.2' => 'cme', 'MELO3C007396.2' => 'cme', 'MELO3C019277.2' => 'cme', 'MELO3C021449.2' => 'cme', 'MELO3C025736.2' => 'cme', 'Migut.D02175' => 'egut', 'Migut.H01573' => 'egut', 'Migut.M01327' => 'egut', 'Migut.N02513' => 'egut', 'MSTRG.14638' => 'ama', 'MSTRG.18632' => 'ama', 'MSTRG.7203' => 'ama', 'Nitab4.5_0000533g0140' => 'nta', 'Nitab4.5_0000888g0150' => 'nta', 'Nitab4.5_0001453g0040' => 'nta', 'Nitab4.5_0002827g0090' => 'nta', 'Nitab4.5_0003082g0040' => 'nta', 'Nitab4.5_0007799g0040' => 'nta', 'Nitab4.5_0008983g0010' => 'nta', 'Nitab4.5_0009017g0020' => 'nta', 'Nn1g02132' => 'nnu', 'Nn1g03492' => 'nnu', 'Nn1g03493' => 'nnu', 'Nn1g03494' => 'nnu', 'Nn1g07164' => 'nnu', 'Nn1g07291' => 'nnu', 'Nn2g10655' => 'nnu', 'Nn2g11652' => 'nnu', 'Nn2g14008' => 'nnu', 'Nn3g17476' => 'nnu', 'Nn3g17477' => 'nnu', 'Nn4g22370' => 'nnu', 'Nn4g25255' => 'nnu', 'Nn5g27755' => 'nnu', 'Nn6g34260' => 'nnu', 'Nn6g35041' => 'nnu', 'Oeu005924.1' => 'oeu', 'Oeu008383.1' => 'oeu', 'Oeu014928.1' => 'oeu', 'Oeu019889.1' => 'oeu', 'Oeu022271.1' => 'oeu', 'Oeu025271.1' => 'oeu', 'Oeu036302.1' => 'oeu', 'Oeu044100.1' => 'oeu', 'Os01g0528300' => 'osa', 'Os03g0286200' => 'osa', 'Os04g0406600' => 'osa', 'Os07g0512000' => 'osa', 'Os07g0694600' => 'osa', 'Os08g0411000' => 'osa', 'Os09g0565700' => 'osa', 'Os09g0566050' => 'osa', 'Os10g0523700' => 'osa', 'Peaxi162Scf00002g00514' => 'pax', 'Peaxi162Scf00047g01817' => 'pax', 'Peaxi162Scf00114g00001' => 'pax', 'Peaxi162Scf00147g00613' => 'pax', 'Peaxi162Scf00389g00425' => 'pax', 'PGR042G1139' => 'pgr', 'PGR042G3273' => 'pgr', 'PGR102G2180' => 'pgr', 'PGR119G0234' => 'pgr', 'PGR119G0668' => 'pgr', 'PGSC0003DMG400007122' => 'stu', 'PGSC0003DMG400016478' => 'stu', 'PGSC0003DMG400025374' => 'stu', 'PGSC0003DMG400026536' => 'stu', 'Phvul.003G079600' => 'pvu', 'Phvul.005G115600' => 'pvu', 'Phvul.005G127100' => 'pvu', 'Phvul.006G149500' => 'pvu', 'Phvul.006G149600' => 'pvu', 'Phvul.011G071800' => 'pvu', 'Phvul.011G090400' => 'pvu', 'Potri.004G013400' => 'ptr', 'Potri.004G188100' => 'ptr', 'Potri.008G195500' => 'ptr', 'Potri.009G148800' => 'ptr', 'Potri.011G004700' => 'ptr', 'Pp3c17_22810' => 'ppa', 'Pp3c18_4480' => 'ppa', 'Pp3c19_13030' => 'ppa', 'Pp3c1_33620' => 'ppa', 'Pp3c2_9380' => 'ppa', 'PRCOL_00001023' => 'pco', 'Prupe.3G216300' => 'ppe', 'Prupe.4G019500' => 'ppe', 'Prupe.6G092500' => 'ppe', 'Prupe.6G119200' => 'ppe', 'Psat0s1945g0080' => 'psa', 'Psat0s4167g0040' => 'psa', 'Psat1g185800' => 'psa', 'Psat4g006440' => 'psa', 'Psat4g006480' => 'psa', 'Psat4g168120' => 'psa', 'Psat5g255680' => 'psa', 'Psat5g261760' => 'psa', 'Psat7g222120' => 'psa', 'PSO063G7252' => 'pso', 'PSO170G4778' => 'pso', 'PSO210G2249' => 'pso', 'PSO339G2411' => 'pso', 'PSO339G2457' => 'pso', 'PSO339G2854' => 'pso', 'PSO339G4288' => 'pso', 'PSO339G4615' => 'pso', 'PSO384G2796' => 'pso', 'PSO384G2940' => 'pso', 'PSO384G4227' => 'pso', 'PSO478G1425' => 'pso', 'PSO541G3863' => 'pso', 'PSO675G0507' => 'pso', 'PSO782G0338' => 'pso', 'PSO832G0644' => 'pso', 'QL01p013664' => 'qlo', 'QL01p036598' => 'qlo', 'QL05p072984' => 'qlo', 'QL08p005768' => 'qlo', 'QL08p032743' => 'qlo', 'QL93p0073_0439' => 'qlo', 'QL93p0073_0444' => 'qlo', 'RcHm_v2.0_Chr5g0002851' => 'rch', 'RcHm_v2.0_Chr5g0055201' => 'rch', 'RcHm_v2.0_Chr5g0061191' => 'rch', 'RcHm_v2.0_Chr7g0203231' => 'rch', 'Rhsim01G0208100' => 'rsi', 'Rhsim01G0208200' => 'rsi', 'Rhsim02G0106500' => 'rsi', 'Rhsim03G0107900' => 'rsi', 'Rhsim06G0163400' => 'rsi', 'Rhsim13G0105200' => 'rsi', 'Sabra04G0006300' => 'sbr', 'Sabra04G0127000' => 'sbr', 'Sabra08G0148700' => 'sbr', 'Sabra09G0117400' => 'sbr', 'SalBow1G3326' => 'sbo', 'SalBow3G3228' => 'sbo', 'SalBow6G1634' => 'sbo', 'SalBow6G3603' => 'sbo', 'SalBow6G5266' => 'sbo', 'SalBow7G2265' => 'sbo', 'SalBow8G0850' => 'sbo', 'SalBow8G2592' => 'sbo', 'Sc05g0009240' => 'sci', 'Sc12g0002300' => 'sci', 'Sc21g0000100' => 'sci', 'Sc21g0004720' => 'sci', 'Sed0002949' => 'sed', 'Sed0004114' => 'sed', 'Sed0004306' => 'sed', 'Sed0006172' => 'sed', 'Sed0008413' => 'sed', 'Sed0013809' => 'sed', 'Sed0019556' => 'sed', 'SEGI_03570' => 'sgi', 'SEGI_07859' => 'sgi', 'SEGI_15042' => 'sgi', 'SEGI_16263' => 'sgi', 'SEGI_16552' => 'sgi', 'SEGI_24331' => 'sgi', 'SEGI_27316' => 'sgi', 'SEGI_29521' => 'sgi', 'SEGI_41342' => 'sgi', 'SGA_v2.0_scaffold27G11617' => 'sas', 'SGA_v2.0_scaffold316G48428' => 'sas', 'SGA_v2.0_scaffold49G18261' => 'sas', 'SGA_v2.0_scaffold7G03831' => 'sas', 'SGA_v2.0_scaffold93G28359' => 'sas', 'SHI02210' => 'shi', 'SHI06028' => 'shi', 'SHI06321' => 'shi', 'SMO111G0012' => 'smo', 'SMO228G0080' => 'smo', 'SMO356G0756' => 'smo', 'Solyc02g080620.3' => 'sly', 'Solyc06g074530.1' => 'sly', 'Solyc11g066890.1' => 'sly', 'Solyc11g072520.3' => 'sly', 'Sopen02g025330' => 'spe', 'Sopen06g031000' => 'spe', 'Sopen09g008240' => 'spe', 'Sopen09g025210' => 'spe', 'Sopen11g026600' => 'spe', 'Sopen11g030170' => 'spe', 'Sp1g10420' => 'spa', 'Sp3g06570' => 'spa', 'Sp4g10660' => 'spa', 'Sp5g16460' => 'spa', 'Sp6g22710' => 'spa', 'TAR365G0112' => 'tar', 'TAR369G0717' => 'tar', 'TAR374G0976' => 'tar', 'TAR623G1128' => 'tar', 'TAR626G1937' => 'tar', 'TAR627G0123' => 'tar', 'TAR628G0305' => 'tar', 'TAR636G1176' => 'tar', 'TAR636G2442' => 'tar', 'THA.LOC104800556' => 'tha', 'THA.LOC104809501' => 'tha', 'THA.LOC104815126' => 'tha', 'THA.LOC104815732' => 'tha', 'THA.LOC104823528' => 'tha', 'Thecc.02G365600' => 'tca', 'Thecc.06G222300' => 'tca', 'Thecc.09G261800' => 'tca', 'Thecc.09G291400' => 'tca', 'Thhalv10003028m.g' => 'esa', 'Thhalv10007886m.g' => 'esa', 'Thhalv10016085m.g' => 'esa', 'Thhalv10016681m.g' => 'esa', 'Thhalv10020951m.g' => 'esa', 'TPR.G15598' => 'tpr', 'TPR.G29305' => 'tpr', 'TPR.G32395' => 'tpr', 'TPR.G36998' => 'tpr', 'TPR.G4227' => 'tpr', 'TWI18G1433' => 'twi', 'TWI31G0755' => 'twi', 'TWI38G0912' => 'twi', 'TWI75G1097' => 'twi', 'TWI75G1619' => 'twi', 'TWI79G1336' => 'twi', 'unitig_0.g943' => 'ugi', 'unitig_0.g944' => 'ugi', 'unitig_22.g6646' => 'ugi', 'unitig_37.g12681' => 'ugi', 'unitig_8.g3290' => 'ugi', 'vmacro03278' => 'vma', 'vmacro12197' => 'vma', 'vmacro14478' => 'vma', 'vmacro15787' => 'vma', 'vmacro15789' => 'vma', 'vmacro15790' => 'vma', 'vmacro15806' => 'vma', 'vmacro22907' => 'vma', 'vmacro22908' => 'vma', 'vmacro22909' => 'vma', 'vmacro23108' => 'vma', 'VMungo0540G0540' => 'vmu', 'VMungo0540G2468' => 'vmu', 'VMungo1080G0390' => 'vmu', 'VMungo1080G1165' => 'vmu', 'VMungo1127G0170' => 'vmu', 'VMungo1127G2099' => 'vmu', 'VMungo1215G3013' => 'vmu', 'Zm00001eb013110' => 'zma', 'Zm00001eb084260' => 'zma', 'Zm00001eb096110' => 'zma', 'Zm00001eb217510' => 'zma', 'Zm00001eb322550' => 'zma', 'Zm00001eb390770' => 'zma', 'Zm00001eb397170' => 'zma', 'Zm00001eb404610' => 'zma', 'Zm00001eb421790' => 'zma' ) $gf_id = 'HOM05D000911' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000911' ) $data_identifier = 'HOM05D000911' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 16, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 5, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 6, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 8, 'nnu' => (int) 16, 'oeu' => (int) 8, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 5, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 16, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421790' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000911', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27780' => 'bna', 'A03p35380' => 'bna', 'A04p21160' => 'bna', 'A05p40570' => 'bna', 'A06p26900' => 'bna', 'A08p33230' => 'bna', 'A09p65960' => 'bna', 'A10p18290' => 'bna', 'Aa31LG1G12990' => 'aar', 'Aa31LG1G2980' => 'aar', 'Aa31LG4G14320' => 'aar', 'Aa31LG7G11800' => 'aar', 'Aa31sc36G50' => 'aar', 'Aa31sc36G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3721' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5459' => 'aag', 'Actinidia03028' => 'ach', 'Actinidia03753' => 'ach', 'Actinidia04187' => 'ach', 'Actinidia05509' => 'ach', 'Actinidia24180' => 'ach', 'Actinidia26906' => 'ach', 'Actinidia37097' => 'ach', 'Actinidia38249' => 'ach', 'Ah.01g003470' => 'amhyb', 'Ah.01g004580' => 'amhyb', 'Ah.01g014850' => 'amhyb', 'Ah.01g016830' => 'amhyb', 'Ah.14g088000' => 'amhyb', 'AL1G22980' => 'aly', 'AL3G18990' => 'aly', 'AL4G22440' => 'aly', 'AL4G33180' => 'aly', 'AL5G22920' => 'aly', 'AL6G33660' => 'aly', 'AL8G20720' => 'aly', 'Aqoxy1G00935' => 'aox', 'Aqoxy1G02094' => 'aox', 'Aqoxy2G01239' => 'aox', 'Aqoxy4G01870' => 'aox', 'Aqoxy7G00450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.36ZVTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71EM27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5D6C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH3WRE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3NCM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RIM768' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YB5YRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z36GDV' => 'arhy', 'AT1G08250' => 'ath', 'AT1G11790' => 'ath', 'AT2G27820' => 'ath', 'AT3G07630' => 'ath', 'AT3G44720' => 'ath', 'AT5G22630' => 'ath', 'ATR0693G304' => 'atr', 'ATR0794G109' => 'atr', 'ATR0820G120' => 'atr', 'ATR1159G064' => 'atr', 'Atru.chr10.2239' => 'acertr', 'Atru.chr3.3371' => 'acertr', 'Atru.chr6.3202' => 'acertr', 'AUR62006499' => 'cqu', 'AUR62012718' => 'cqu', 'AUR62021938' => 'cqu', 'AUR62023932' => 'cqu', 'AUR62025034' => 'cqu', 'AUR62025035' => 'cqu', 'AUR62038307' => 'cqu', 'AUR62043466' => 'cqu', 'BcaB02g10748' => 'bca', 'BcaB03g13231' => 'bca', 'BcaB03g14689' => 'bca', 'BcaB05g22716' => 'bca', 'BcaB06g28172' => 'bca', 'BcaB08g36413' => 'bca', 'BcaC01g02186' => 'bca', 'BcaC01g04272' => 'bca', 'BcaC02g08080' => 'bca', 'BcaC02g08227' => 'bca', 'BcaC03g13901' => 'bca', 'BcaC04g19593' => 'bca', 'BcaC04g20874' => 'bca', 'BcaC05g29557' => 'bca', 'BcaC06g35505' => 'bca', 'BcaC07g41954' => 'bca', 'BcaC07g41955' => 'bca', 'BcaC07g41956' => 'bca', 'BcaC07g42519' => 'bca', 'BcaC07g42520' => 'bca', 'BcaC07g42523' => 'bca', 'BcaC07g42524' => 'bca', 'BcaC07g42525' => 'bca', 'BcaC08g47480' => 'bca', 'BcaC08g47481' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00530' => 'bna', 'BolC2t07178H' => 'bol', 'BolC3t16567H' => 'bol', 'BolC4t27234H' => 'bol', 'BolC5t29728H' => 'bol', 'BolC5t34622H' => 'bol', 'BolC6t40321H' => 'bol', 'BolC7t42028H' => 'bol', 'BolC8t49125H' => 'bol', 'BolC8t52538H' => 'bol', 'BolC8t52539H' => 'bol', 'BolC9t56681H' => 'bol', 'BolC9t58266H' => 'bol', 'BolSC21t60294H' => 'bol', 'BraA02t05670Z' => 'bra', 'BraA03t12716Z' => 'bra', 'BraA04t17685Z' => 'bra', 'BraA05t22788Z' => 'bra', 'BraA06t24032Z' => 'bra', 'BraA06t25625Z' => 'bra', 'BraA07t27930Z' => 'bra', 'BraA08t35242Z' => 'bra', 'BraA09t38609Z' => 'bra', 'BraA10t43905Z' => 'bra', 'C02p11060' => 'bna', 'C03p42990' => 'bna', 'C03p67310' => 'bna', 'C04p56990' => 'bna', 'C04p58660' => 'bna', 'C05p09890' => 'bna', 'C05p59680' => 'bna', 'C06p19830' => 'bna', 'C06p53040' => 'bna', 'C07p15230' => 'bna', 'C08p50070' => 'bna', 'C08p50090' => 'bna', 'C09p38330' => 'bna', 'C09p53940' => 'bna', 'CAN.G1014.1' => 'can', 'CAN.G644.30' => 'can', 'CAN.G84.47' => 'can', 'CAN.G919.8' => 'can', 'CANSAT54G0113' => 'cansat', 'CANSAT54G1286' => 'cansat', 'CANSAT64G1020' => 'cansat', 'CARHR008080' => 'chi', 'CARHR008090' => 'chi', 'CARHR012130' => 'chi', 'CARHR038390' => 'chi', 'CARHR082330' => 'chi', 'CARHR120520' => 'chi', 'CARHR151470' => 'chi', 'CARHR190950' => 'chi', 'Carub.0001s0760' => 'cru', 'Carub.0001s1146' => 'cru', 'Carub.0003s0721' => 'cru', 'Carub.0004s0858' => 'cru', 'Carub.0005s1040' => 'cru', 'Carub.0006s2035' => 'cru', 'Carub.0015s0005' => 'cru', 'Ca_01607_v3' => 'car', 'Ca_01677_v3' => 'car', 'Ca_06087_v3' => 'car', 'Ca_19238_v3' => 'car', 'Ca_19373_v3' => 'car', 'Ca_21079_v3' => 'car', 'CBR_g54016' => 'cbr', 'CBR_g54018' => 'cbr', 'CBR_g54020' => 'cbr', 'Cc01_g09780' => 'ccan', 'Cc01_g11680' => 'ccan', 'Cc02_g15610' => 'ccan', 'Cc05_g04350' => 'ccan', 'Cc09_g01580' => 'ccan', 'CDE01G0795' => 'cde', 'CDE02G2024' => 'cde', 'CDE02G2260' => 'cde', 'CDE02G4561' => 'cde', 'CDE05G2733' => 'cde', 'CDE05G3422' => 'cde', 'CDE06G2003' => 'cde', 'CDE08G0576' => 'cde', 'CDE09G0048' => 'cde', 'CDE11G0805' => 'cde', 'Cfa003644' => 'cfa', 'Cfa006290' => 'cfa', 'Cfa010080' => 'cfa', 'Cfa011376' => 'cfa', 'Cfa011576' => 'cfa', 'Cfa011577' => 'cfa', 'Cfa014389' => 'cfa', 'Ciclev10006044m.g' => 'ccl', 'Ciclev10006954m.g' => 'ccl', 'Ciclev10015131m.g' => 'ccl', 'Ciclev10015580m.g' => 'ccl', 'Ciclev10028359m.g' => 'ccl', 'Ciclev10028573m.g' => 'ccl', 'CiPaw.03G159300' => 'cil', 'CiPaw.04G115100' => 'cil', 'CiPaw.09G092800' => 'cil', 'CiPaw.10G071800' => 'cil', 'CiPaw.13G105800' => 'cil', 'CiPaw.13G141000' => 'cil', 'CiPaw.14G103400' => 'cil', 'ClCG01G012700' => 'cla', 'ClCG01G012720' => 'cla', 'ClCG01G021920' => 'cla', 'ClCG02G008870' => 'cla', 'ClCG02G020840' => 'cla', 'ClCG02G021930' => 'cla', 'COL.COLO4_19302' => 'col', 'COL.COLO4_25262' => 'col', 'COL.COLO4_31788' => 'col', 'Cpa.g.c34684' => 'cpa', 'Cpa.g.c36520.1' => 'cpa', 'Cpa.g.c45626' => 'cpa', 'Cpa.g.sc121.17' => 'cpa', 'Cpa.g.sc13.22' => 'cpa', 'Cpa.g.sc87.88' => 'cpa', 'Cre06.g261800' => 'cre', 'CsaV3_1G014500' => 'csa', 'CsaV3_1G014510' => 'csa', 'CsaV3_2G034880' => 'csa', 'CsaV3_6G014760' => 'csa', 'CsaV3_6G021500' => 'csa', 'CsaV3_6G048980' => 'csa', 'CSS0002511' => 'camsi', 'CSS0007556' => 'camsi', 'CSS0008532' => 'camsi', 'CSS0009709' => 'camsi', 'CSS0010486' => 'camsi', 'CSS0016768' => 'camsi', 'CSS0023512' => 'camsi', 'CSS0025341' => 'camsi', 'CSS0027999' => 'camsi', 'CSS0028944' => 'camsi', 'CSS0032292' => 'camsi', 'CSS0032464' => 'camsi', 'CSS0037153' => 'camsi', 'CSS0039256' => 'camsi', 'CSS0048392' => 'camsi', 'CSS0050458' => 'camsi', 'DCAR_004224' => 'dca', 'DCAR_006147' => 'dca', 'DCAR_006465' => 'dca', 'DCAR_008159' => 'dca', 'DCAR_012164' => 'dca', 'DCAR_019764' => 'dca', 'Dinv05418' => 'din', 'Dinv10839' => 'din', 'Dinv12521' => 'din', 'Dinv13900' => 'din', 'Dinv29426' => 'din', 'Duzib150G0263' => 'dzi', 'Duzib168G1178' => 'dzi', 'Duzib168G1924' => 'dzi', 'Duzib170G0299' => 'dzi', 'Duzib170G0813' => 'dzi', 'Duzib235G1128' => 'dzi', 'Duzib248G1060' => 'dzi', 'ECA232G1910' => 'eca', 'ECA233G4621' => 'eca', 'ECA238G1216' => 'eca', 'ECA238G1784' => 'eca', 'ECA248G1242' => 'eca', 'EL10Ac8g20071' => 'bvu', 'EL10Ac9g21086' => 'bvu', 'EL10Ac9g22407' => 'bvu', 'EL10Ac9g22412' => 'bvu', 'Eucgr.A01119' => 'egr', 'Eucgr.E04043' => 'egr', 'Eucgr.J00428' => 'egr', 'Eucgr.J00958' => 'egr', 'FAN11G3091' => 'fan', 'FAN11G3651' => 'fan', 'FAN16G2566' => 'fan', 'FAN21G3155' => 'fan', 'FAN21G3400' => 'fan', 'FAN21G3543' => 'fan', 'FAN25G0234' => 'fan', 'FAN25G1422' => 'fan', 'FAN25G3392' => 'fan', 'FvH4_3g01940' => 'fve', 'FvH4_3g29870' => 'fve', 'FvH4_3g33680' => 'fve', 'Glyma.09G004200' => 'gma', 'Glyma.11G151288' => 'gma', 'Glyma.11G189100' => 'gma', 'Glyma.12G072500' => 'gma', 'Glyma.12G085500' => 'gma', 'Glyma.12G181800' => 'gma', 'Glyma.12G193000' => 'gma', 'Glyma.13G309300' => 'gma', 'Glyma.13G319000' => 'gma', 'Glyma.17G012600' => 'gma', 'Gohir.A06G148600' => 'ghi', 'Gohir.A07G115800' => 'ghi', 'Gohir.A08G003600' => 'ghi', 'Gohir.A09G093300' => 'ghi', 'Gohir.A09G105400' => 'ghi', 'Gohir.A09G105500' => 'ghi', 'Gohir.D06G154600' => 'ghi', 'Gohir.D07G120200' => 'ghi', 'Gohir.D08G013900' => 'ghi', 'Gohir.D09G093100' => 'ghi', 'Gohir.D09G102200' => 'ghi', 'Gohir.D09G102300' => 'ghi', 'Gorai.001G129400' => 'gra', 'Gorai.004G008200' => 'gra', 'Gorai.006G109800' => 'gra', 'Gorai.006G119500' => 'gra', 'Gorai.006G121300' => 'gra', 'Gorai.010G180700' => 'gra', 'GSVIVG01012716001' => 'vvi', 'GSVIVG01025118001' => 'vvi', 'GSVIVG01030439001' => 'vvi', 'GSVIVG01031397001' => 'vvi', 'HanXRQChr01g0004201' => 'han', 'HanXRQChr02g0054941' => 'han', 'HanXRQChr05g0141811' => 'han', 'HanXRQChr07g0197751' => 'han', 'HanXRQChr11g0346691' => 'han', 'HanXRQChr13g0396971' => 'han', 'HanXRQChr14g0432951' => 'han', 'HanXRQChr14g0452001' => 'han', 'HanXRQChr15g0496681' => 'han', 'HanXRQChr17g0557491' => 'han', 'HanXRQChr17g0557501' => 'han', 'Haze_06809' => 'cav', 'Haze_12852' => 'cav', 'Haze_15850' => 'cav', 'Haze_23446' => 'cav', 'Haze_23942' => 'cav', 'Haze_23943' => 'cav', 'Hma1.2p1_0091F.1_g046450' => 'hma', 'Hma1.2p1_0128F.1_g059910' => 'hma', 'Hma1.2p1_0249F.1_g102260' => 'hma', 'Hma1.2p1_0453F.1_g156190' => 'hma', 'Hma1.2p1_0695F.1_g204380' => 'hma', 'Hma1.2p1_0749F.1_g212650' => 'hma', 'Hma1.2p1_2156F.1_g315420' => 'hma', 'Hma1.2p1_2686F.1_g326940' => 'hma', 'HPP92_006428' => 'vpl', 'HPP92_012069' => 'vpl', 'HPP92_014129' => 'vpl', 'HPP92_014133' => 'vpl', 'HPP92_017315' => 'vpl', 'HPP92_026445' => 'vpl', 'HPP92_026446' => 'vpl', 'Hund00774' => 'sun', 'Hund07682' => 'sun', 'Hund21413' => 'sun', 'Hund23462' => 'sun', 'Hund23463' => 'sun', 'Lalb_Chr03g0027911' => 'lal', 'Lalb_Chr13g0304271' => 'lal', 'Lalb_Chr19g0137471' => 'lal', 'Lalb_Chr22g0350651' => 'lal', 'Lalb_Chr24g0395151' => 'lal', 'Lj1A1231T40' => 'lonja', 'Lj1A221T48' => 'lonja', 'Lj1C924T12' => 'lonja', 'Lj2C993G6' => 'lonja', 'Lj3g0005790' => 'lja', 'Lj3g0015432' => 'lja', 'Lj3g0017722' => 'lja', 'Lj3g0018497' => 'lja', 'Lj4g0025071' => 'lja', 'Lsat_1_v5_gn_1_129680' => 'lsa', 'Lsat_1_v5_gn_2_25321' => 'lsa', 'Lsat_1_v5_gn_2_95461' => 'lsa', 'Lsat_1_v5_gn_4_159620' => 'lsa', 'Lsat_1_v5_gn_6_41301' => 'lsa', 'Lsat_1_v5_gn_6_74660' => 'lsa', 'Lsat_1_v5_gn_7_11520' => 'lsa', 'Lsat_1_v5_gn_9_67680' => 'lsa', 'Manes.04G008300' => 'mes', 'Manes.04G008400' => 'mes', 'Manes.04G026500' => 'mes', 'Manes.10G135300' => 'mes', 'Manes.11G157300' => 'mes', 'Manes.12G074000' => 'mes', 'Manes.16G006200' => 'mes', 'Manes.17G026400' => 'mes', 'Mapoly0024s0086' => 'mpo', 'Mapoly0024s0087' => 'mpo', 'Mapoly0071s0057' => 'mpo', 'Mapoly0204s0012' => 'mpo', 'MBI04_g37681_MAGBIO' => 'mbi', 'MBI05_g17779_MAGBIO' => 'mbi', 'MBI12_g31184_MAGBIO' => 'mbi', 'MBI17_g11083_MAGBIO' => 'mbi', 'MBI18_g03883_MAGBIO' => 'mbi', 'MBI18_g28940_MAGBIO' => 'mbi', 'MCO01G690' => 'mco', 'MD03G1109900' => 'mdo', 'MD03G1134800' => 'mdo', 'MD05G1348000' => 'mdo', 'MD10G1322400' => 'mdo', 'MD11G1123300' => 'mdo', 'MD11G1157600' => 'mdo', 'Medtr2g084875' => 'mtr', 'Medtr2g088130' => 'mtr', 'Medtr4g055310' => 'mtr', 'Medtr4g061070' => 'mtr', 'Medtr4g132250' => 'mtr', 'MELO3C004795.2' => 'cme', 'MELO3C004797.2' => 'cme', 'MELO3C007396.2' => 'cme', 'MELO3C019277.2' => 'cme', 'MELO3C021449.2' => 'cme', 'MELO3C025736.2' => 'cme', 'Migut.D02175' => 'egut', 'Migut.H01573' => 'egut', 'Migut.M01327' => 'egut', 'Migut.N02513' => 'egut', 'MSTRG.14638' => 'ama', 'MSTRG.18632' => 'ama', 'MSTRG.7203' => 'ama', 'Nitab4.5_0000533g0140' => 'nta', 'Nitab4.5_0000888g0150' => 'nta', 'Nitab4.5_0001453g0040' => 'nta', 'Nitab4.5_0002827g0090' => 'nta', 'Nitab4.5_0003082g0040' => 'nta', 'Nitab4.5_0007799g0040' => 'nta', 'Nitab4.5_0008983g0010' => 'nta', 'Nitab4.5_0009017g0020' => 'nta', 'Nn1g02132' => 'nnu', 'Nn1g03492' => 'nnu', 'Nn1g03493' => 'nnu', 'Nn1g03494' => 'nnu', 'Nn1g07164' => 'nnu', 'Nn1g07291' => 'nnu', 'Nn2g10655' => 'nnu', 'Nn2g11652' => 'nnu', 'Nn2g14008' => 'nnu', 'Nn3g17476' => 'nnu', 'Nn3g17477' => 'nnu', 'Nn4g22370' => 'nnu', 'Nn4g25255' => 'nnu', 'Nn5g27755' => 'nnu', 'Nn6g34260' => 'nnu', 'Nn6g35041' => 'nnu', 'Oeu005924.1' => 'oeu', 'Oeu008383.1' => 'oeu', 'Oeu014928.1' => 'oeu', 'Oeu019889.1' => 'oeu', 'Oeu022271.1' => 'oeu', 'Oeu025271.1' => 'oeu', 'Oeu036302.1' => 'oeu', 'Oeu044100.1' => 'oeu', 'Os01g0528300' => 'osa', 'Os03g0286200' => 'osa', 'Os04g0406600' => 'osa', 'Os07g0512000' => 'osa', 'Os07g0694600' => 'osa', 'Os08g0411000' => 'osa', 'Os09g0565700' => 'osa', 'Os09g0566050' => 'osa', 'Os10g0523700' => 'osa', 'Peaxi162Scf00002g00514' => 'pax', 'Peaxi162Scf00047g01817' => 'pax', 'Peaxi162Scf00114g00001' => 'pax', 'Peaxi162Scf00147g00613' => 'pax', 'Peaxi162Scf00389g00425' => 'pax', 'PGR042G1139' => 'pgr', 'PGR042G3273' => 'pgr', 'PGR102G2180' => 'pgr', 'PGR119G0234' => 'pgr', 'PGR119G0668' => 'pgr', 'PGSC0003DMG400007122' => 'stu', 'PGSC0003DMG400016478' => 'stu', 'PGSC0003DMG400025374' => 'stu', 'PGSC0003DMG400026536' => 'stu', 'Phvul.003G079600' => 'pvu', 'Phvul.005G115600' => 'pvu', 'Phvul.005G127100' => 'pvu', 'Phvul.006G149500' => 'pvu', 'Phvul.006G149600' => 'pvu', 'Phvul.011G071800' => 'pvu', 'Phvul.011G090400' => 'pvu', 'Potri.004G013400' => 'ptr', 'Potri.004G188100' => 'ptr', 'Potri.008G195500' => 'ptr', 'Potri.009G148800' => 'ptr', 'Potri.011G004700' => 'ptr', 'Pp3c17_22810' => 'ppa', 'Pp3c18_4480' => 'ppa', 'Pp3c19_13030' => 'ppa', 'Pp3c1_33620' => 'ppa', 'Pp3c2_9380' => 'ppa', 'PRCOL_00001023' => 'pco', 'Prupe.3G216300' => 'ppe', 'Prupe.4G019500' => 'ppe', 'Prupe.6G092500' => 'ppe', 'Prupe.6G119200' => 'ppe', 'Psat0s1945g0080' => 'psa', 'Psat0s4167g0040' => 'psa', 'Psat1g185800' => 'psa', 'Psat4g006440' => 'psa', 'Psat4g006480' => 'psa', 'Psat4g168120' => 'psa', 'Psat5g255680' => 'psa', 'Psat5g261760' => 'psa', 'Psat7g222120' => 'psa', 'PSO063G7252' => 'pso', 'PSO170G4778' => 'pso', 'PSO210G2249' => 'pso', 'PSO339G2411' => 'pso', 'PSO339G2457' => 'pso', 'PSO339G2854' => 'pso', 'PSO339G4288' => 'pso', 'PSO339G4615' => 'pso', 'PSO384G2796' => 'pso', 'PSO384G2940' => 'pso', 'PSO384G4227' => 'pso', 'PSO478G1425' => 'pso', 'PSO541G3863' => 'pso', 'PSO675G0507' => 'pso', 'PSO782G0338' => 'pso', 'PSO832G0644' => 'pso', 'QL01p013664' => 'qlo', 'QL01p036598' => 'qlo', 'QL05p072984' => 'qlo', 'QL08p005768' => 'qlo', 'QL08p032743' => 'qlo', 'QL93p0073_0439' => 'qlo', 'QL93p0073_0444' => 'qlo', 'RcHm_v2.0_Chr5g0002851' => 'rch', 'RcHm_v2.0_Chr5g0055201' => 'rch', 'RcHm_v2.0_Chr5g0061191' => 'rch', 'RcHm_v2.0_Chr7g0203231' => 'rch', 'Rhsim01G0208100' => 'rsi', 'Rhsim01G0208200' => 'rsi', 'Rhsim02G0106500' => 'rsi', 'Rhsim03G0107900' => 'rsi', 'Rhsim06G0163400' => 'rsi', 'Rhsim13G0105200' => 'rsi', 'Sabra04G0006300' => 'sbr', 'Sabra04G0127000' => 'sbr', 'Sabra08G0148700' => 'sbr', 'Sabra09G0117400' => 'sbr', 'SalBow1G3326' => 'sbo', 'SalBow3G3228' => 'sbo', 'SalBow6G1634' => 'sbo', 'SalBow6G3603' => 'sbo', 'SalBow6G5266' => 'sbo', 'SalBow7G2265' => 'sbo', 'SalBow8G0850' => 'sbo', 'SalBow8G2592' => 'sbo', 'Sc05g0009240' => 'sci', 'Sc12g0002300' => 'sci', 'Sc21g0000100' => 'sci', 'Sc21g0004720' => 'sci', 'Sed0002949' => 'sed', 'Sed0004114' => 'sed', 'Sed0004306' => 'sed', 'Sed0006172' => 'sed', 'Sed0008413' => 'sed', 'Sed0013809' => 'sed', 'Sed0019556' => 'sed', 'SEGI_03570' => 'sgi', 'SEGI_07859' => 'sgi', 'SEGI_15042' => 'sgi', 'SEGI_16263' => 'sgi', 'SEGI_16552' => 'sgi', 'SEGI_24331' => 'sgi', 'SEGI_27316' => 'sgi', 'SEGI_29521' => 'sgi', 'SEGI_41342' => 'sgi', 'SGA_v2.0_scaffold27G11617' => 'sas', 'SGA_v2.0_scaffold316G48428' => 'sas', 'SGA_v2.0_scaffold49G18261' => 'sas', 'SGA_v2.0_scaffold7G03831' => 'sas', 'SGA_v2.0_scaffold93G28359' => 'sas', 'SHI02210' => 'shi', 'SHI06028' => 'shi', 'SHI06321' => 'shi', 'SMO111G0012' => 'smo', 'SMO228G0080' => 'smo', 'SMO356G0756' => 'smo', 'Solyc02g080620.3' => 'sly', 'Solyc06g074530.1' => 'sly', 'Solyc11g066890.1' => 'sly', 'Solyc11g072520.3' => 'sly', 'Sopen02g025330' => 'spe', 'Sopen06g031000' => 'spe', 'Sopen09g008240' => 'spe', 'Sopen09g025210' => 'spe', 'Sopen11g026600' => 'spe', 'Sopen11g030170' => 'spe', 'Sp1g10420' => 'spa', 'Sp3g06570' => 'spa', 'Sp4g10660' => 'spa', 'Sp5g16460' => 'spa', 'Sp6g22710' => 'spa', 'TAR365G0112' => 'tar', 'TAR369G0717' => 'tar', 'TAR374G0976' => 'tar', 'TAR623G1128' => 'tar', 'TAR626G1937' => 'tar', 'TAR627G0123' => 'tar', 'TAR628G0305' => 'tar', 'TAR636G1176' => 'tar', 'TAR636G2442' => 'tar', 'THA.LOC104800556' => 'tha', 'THA.LOC104809501' => 'tha', 'THA.LOC104815126' => 'tha', 'THA.LOC104815732' => 'tha', 'THA.LOC104823528' => 'tha', 'Thecc.02G365600' => 'tca', 'Thecc.06G222300' => 'tca', 'Thecc.09G261800' => 'tca', 'Thecc.09G291400' => 'tca', 'Thhalv10003028m.g' => 'esa', 'Thhalv10007886m.g' => 'esa', 'Thhalv10016085m.g' => 'esa', 'Thhalv10016681m.g' => 'esa', 'Thhalv10020951m.g' => 'esa', 'TPR.G15598' => 'tpr', 'TPR.G29305' => 'tpr', 'TPR.G32395' => 'tpr', 'TPR.G36998' => 'tpr', 'TPR.G4227' => 'tpr', 'TWI18G1433' => 'twi', 'TWI31G0755' => 'twi', 'TWI38G0912' => 'twi', 'TWI75G1097' => 'twi', 'TWI75G1619' => 'twi', 'TWI79G1336' => 'twi', 'unitig_0.g943' => 'ugi', 'unitig_0.g944' => 'ugi', 'unitig_22.g6646' => 'ugi', 'unitig_37.g12681' => 'ugi', 'unitig_8.g3290' => 'ugi', 'vmacro03278' => 'vma', 'vmacro12197' => 'vma', 'vmacro14478' => 'vma', 'vmacro15787' => 'vma', 'vmacro15789' => 'vma', 'vmacro15790' => 'vma', 'vmacro15806' => 'vma', 'vmacro22907' => 'vma', 'vmacro22908' => 'vma', 'vmacro22909' => 'vma', 'vmacro23108' => 'vma', 'VMungo0540G0540' => 'vmu', 'VMungo0540G2468' => 'vmu', 'VMungo1080G0390' => 'vmu', 'VMungo1080G1165' => 'vmu', 'VMungo1127G0170' => 'vmu', 'VMungo1127G2099' => 'vmu', 'VMungo1215G3013' => 'vmu', 'Zm00001eb013110' => 'zma', 'Zm00001eb084260' => 'zma', 'Zm00001eb096110' => 'zma', 'Zm00001eb217510' => 'zma', 'Zm00001eb322550' => 'zma', 'Zm00001eb390770' => 'zma', 'Zm00001eb397170' => 'zma', 'Zm00001eb404610' => 'zma', 'Zm00001eb421790' => 'zma' ), 'gf_id' => 'HOM05D000911', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000911' ), 'data_identifier' => 'HOM05D000911', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000911', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27780' => 'bna', 'A03p35380' => 'bna', 'A04p21160' => 'bna', 'A05p40570' => 'bna', 'A06p26900' => 'bna', 'A08p33230' => 'bna', 'A09p65960' => 'bna', 'A10p18290' => 'bna', 'Aa31LG1G12990' => 'aar', 'Aa31LG1G2980' => 'aar', 'Aa31LG4G14320' => 'aar', 'Aa31LG7G11800' => 'aar', 'Aa31sc36G50' => 'aar', 'Aa31sc36G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3721' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5459' => 'aag', 'Actinidia03028' => 'ach', 'Actinidia03753' => 'ach', 'Actinidia04187' => 'ach', 'Actinidia05509' => 'ach', 'Actinidia24180' => 'ach', 'Actinidia26906' => 'ach', 'Actinidia37097' => 'ach', 'Actinidia38249' => 'ach', 'Ah.01g003470' => 'amhyb', 'Ah.01g004580' => 'amhyb', 'Ah.01g014850' => 'amhyb', 'Ah.01g016830' => 'amhyb', 'Ah.14g088000' => 'amhyb', 'AL1G22980' => 'aly', 'AL3G18990' => 'aly', 'AL4G22440' => 'aly', 'AL4G33180' => 'aly', 'AL5G22920' => 'aly', 'AL6G33660' => 'aly', 'AL8G20720' => 'aly', 'Aqoxy1G00935' => 'aox', 'Aqoxy1G02094' => 'aox', 'Aqoxy2G01239' => 'aox', 'Aqoxy4G01870' => 'aox', 'Aqoxy7G00450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.36ZVTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71EM27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5D6C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH3WRE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3NCM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RIM768' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YB5YRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z36GDV' => 'arhy', 'AT1G08250' => 'ath', 'AT1G11790' => 'ath', 'AT2G27820' => 'ath', 'AT3G07630' => 'ath', 'AT3G44720' => 'ath', 'AT5G22630' => 'ath', 'ATR0693G304' => 'atr', 'ATR0794G109' => 'atr', 'ATR0820G120' => 'atr', 'ATR1159G064' => 'atr', 'Atru.chr10.2239' => 'acertr', 'Atru.chr3.3371' => 'acertr', 'Atru.chr6.3202' => 'acertr', 'AUR62006499' => 'cqu', 'AUR62012718' => 'cqu', 'AUR62021938' => 'cqu', 'AUR62023932' => 'cqu', 'AUR62025034' => 'cqu', 'AUR62025035' => 'cqu', 'AUR62038307' => 'cqu', 'AUR62043466' => 'cqu', 'BcaB02g10748' => 'bca', 'BcaB03g13231' => 'bca', 'BcaB03g14689' => 'bca', 'BcaB05g22716' => 'bca', 'BcaB06g28172' => 'bca', 'BcaB08g36413' => 'bca', 'BcaC01g02186' => 'bca', 'BcaC01g04272' => 'bca', 'BcaC02g08080' => 'bca', 'BcaC02g08227' => 'bca', 'BcaC03g13901' => 'bca', 'BcaC04g19593' => 'bca', 'BcaC04g20874' => 'bca', 'BcaC05g29557' => 'bca', 'BcaC06g35505' => 'bca', 'BcaC07g41954' => 'bca', 'BcaC07g41955' => 'bca', 'BcaC07g41956' => 'bca', 'BcaC07g42519' => 'bca', 'BcaC07g42520' => 'bca', 'BcaC07g42523' => 'bca', 'BcaC07g42524' => 'bca', 'BcaC07g42525' => 'bca', 'BcaC08g47480' => 'bca', 'BcaC08g47481' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00530' => 'bna', 'BolC2t07178H' => 'bol', 'BolC3t16567H' => 'bol', 'BolC4t27234H' => 'bol', 'BolC5t29728H' => 'bol', 'BolC5t34622H' => 'bol', 'BolC6t40321H' => 'bol', 'BolC7t42028H' => 'bol', 'BolC8t49125H' => 'bol', 'BolC8t52538H' => 'bol', 'BolC8t52539H' => 'bol', 'BolC9t56681H' => 'bol', 'BolC9t58266H' => 'bol', 'BolSC21t60294H' => 'bol', 'BraA02t05670Z' => 'bra', 'BraA03t12716Z' => 'bra', 'BraA04t17685Z' => 'bra', 'BraA05t22788Z' => 'bra', 'BraA06t24032Z' => 'bra', 'BraA06t25625Z' => 'bra', 'BraA07t27930Z' => 'bra', 'BraA08t35242Z' => 'bra', 'BraA09t38609Z' => 'bra', 'BraA10t43905Z' => 'bra', 'C02p11060' => 'bna', 'C03p42990' => 'bna', 'C03p67310' => 'bna', 'C04p56990' => 'bna', 'C04p58660' => 'bna', 'C05p09890' => 'bna', 'C05p59680' => 'bna', 'C06p19830' => 'bna', 'C06p53040' => 'bna', 'C07p15230' => 'bna', 'C08p50070' => 'bna', 'C08p50090' => 'bna', 'C09p38330' => 'bna', 'C09p53940' => 'bna', 'CAN.G1014.1' => 'can', 'CAN.G644.30' => 'can', 'CAN.G84.47' => 'can', 'CAN.G919.8' => 'can', 'CANSAT54G0113' => 'cansat', 'CANSAT54G1286' => 'cansat', 'CANSAT64G1020' => 'cansat', 'CARHR008080' => 'chi', 'CARHR008090' => 'chi', 'CARHR012130' => 'chi', 'CARHR038390' => 'chi', 'CARHR082330' => 'chi', 'CARHR120520' => 'chi', 'CARHR151470' => 'chi', 'CARHR190950' => 'chi', 'Carub.0001s0760' => 'cru', 'Carub.0001s1146' => 'cru', 'Carub.0003s0721' => 'cru', 'Carub.0004s0858' => 'cru', 'Carub.0005s1040' => 'cru', 'Carub.0006s2035' => 'cru', 'Carub.0015s0005' => 'cru', 'Ca_01607_v3' => 'car', 'Ca_01677_v3' => 'car', 'Ca_06087_v3' => 'car', 'Ca_19238_v3' => 'car', 'Ca_19373_v3' => 'car', 'Ca_21079_v3' => 'car', 'CBR_g54016' => 'cbr', 'CBR_g54018' => 'cbr', 'CBR_g54020' => 'cbr', 'Cc01_g09780' => 'ccan', 'Cc01_g11680' => 'ccan', 'Cc02_g15610' => 'ccan', 'Cc05_g04350' => 'ccan', 'Cc09_g01580' => 'ccan', 'CDE01G0795' => 'cde', 'CDE02G2024' => 'cde', 'CDE02G2260' => 'cde', 'CDE02G4561' => 'cde', 'CDE05G2733' => 'cde', 'CDE05G3422' => 'cde', 'CDE06G2003' => 'cde', 'CDE08G0576' => 'cde', 'CDE09G0048' => 'cde', 'CDE11G0805' => 'cde', 'Cfa003644' => 'cfa', 'Cfa006290' => 'cfa', 'Cfa010080' => 'cfa', 'Cfa011376' => 'cfa', 'Cfa011576' => 'cfa', 'Cfa011577' => 'cfa', 'Cfa014389' => 'cfa', 'Ciclev10006044m.g' => 'ccl', 'Ciclev10006954m.g' => 'ccl', 'Ciclev10015131m.g' => 'ccl', 'Ciclev10015580m.g' => 'ccl', 'Ciclev10028359m.g' => 'ccl', 'Ciclev10028573m.g' => 'ccl', 'CiPaw.03G159300' => 'cil', 'CiPaw.04G115100' => 'cil', 'CiPaw.09G092800' => 'cil', 'CiPaw.10G071800' => 'cil', 'CiPaw.13G105800' => 'cil', 'CiPaw.13G141000' => 'cil', 'CiPaw.14G103400' => 'cil', 'ClCG01G012700' => 'cla', 'ClCG01G012720' => 'cla', 'ClCG01G021920' => 'cla', 'ClCG02G008870' => 'cla', 'ClCG02G020840' => 'cla', 'ClCG02G021930' => 'cla', 'COL.COLO4_19302' => 'col', 'COL.COLO4_25262' => 'col', 'COL.COLO4_31788' => 'col', 'Cpa.g.c34684' => 'cpa', 'Cpa.g.c36520.1' => 'cpa', 'Cpa.g.c45626' => 'cpa', 'Cpa.g.sc121.17' => 'cpa', 'Cpa.g.sc13.22' => 'cpa', 'Cpa.g.sc87.88' => 'cpa', 'Cre06.g261800' => 'cre', 'CsaV3_1G014500' => 'csa', 'CsaV3_1G014510' => 'csa', 'CsaV3_2G034880' => 'csa', 'CsaV3_6G014760' => 'csa', 'CsaV3_6G021500' => 'csa', 'CsaV3_6G048980' => 'csa', 'CSS0002511' => 'camsi', 'CSS0007556' => 'camsi', 'CSS0008532' => 'camsi', 'CSS0009709' => 'camsi', 'CSS0010486' => 'camsi', 'CSS0016768' => 'camsi', 'CSS0023512' => 'camsi', 'CSS0025341' => 'camsi', 'CSS0027999' => 'camsi', 'CSS0028944' => 'camsi', 'CSS0032292' => 'camsi', 'CSS0032464' => 'camsi', 'CSS0037153' => 'camsi', 'CSS0039256' => 'camsi', 'CSS0048392' => 'camsi', 'CSS0050458' => 'camsi', 'DCAR_004224' => 'dca', 'DCAR_006147' => 'dca', 'DCAR_006465' => 'dca', 'DCAR_008159' => 'dca', 'DCAR_012164' => 'dca', 'DCAR_019764' => 'dca', 'Dinv05418' => 'din', 'Dinv10839' => 'din', 'Dinv12521' => 'din', 'Dinv13900' => 'din', 'Dinv29426' => 'din', 'Duzib150G0263' => 'dzi', 'Duzib168G1178' => 'dzi', 'Duzib168G1924' => 'dzi', 'Duzib170G0299' => 'dzi', 'Duzib170G0813' => 'dzi', 'Duzib235G1128' => 'dzi', 'Duzib248G1060' => 'dzi', 'ECA232G1910' => 'eca', 'ECA233G4621' => 'eca', 'ECA238G1216' => 'eca', 'ECA238G1784' => 'eca', 'ECA248G1242' => 'eca', 'EL10Ac8g20071' => 'bvu', 'EL10Ac9g21086' => 'bvu', 'EL10Ac9g22407' => 'bvu', 'EL10Ac9g22412' => 'bvu', 'Eucgr.A01119' => 'egr', 'Eucgr.E04043' => 'egr', 'Eucgr.J00428' => 'egr', 'Eucgr.J00958' => 'egr', 'FAN11G3091' => 'fan', 'FAN11G3651' => 'fan', 'FAN16G2566' => 'fan', 'FAN21G3155' => 'fan', 'FAN21G3400' => 'fan', 'FAN21G3543' => 'fan', 'FAN25G0234' => 'fan', 'FAN25G1422' => 'fan', 'FAN25G3392' => 'fan', 'FvH4_3g01940' => 'fve', 'FvH4_3g29870' => 'fve', 'FvH4_3g33680' => 'fve', 'Glyma.09G004200' => 'gma', 'Glyma.11G151288' => 'gma', 'Glyma.11G189100' => 'gma', 'Glyma.12G072500' => 'gma', 'Glyma.12G085500' => 'gma', 'Glyma.12G181800' => 'gma', 'Glyma.12G193000' => 'gma', 'Glyma.13G309300' => 'gma', 'Glyma.13G319000' => 'gma', 'Glyma.17G012600' => 'gma', 'Gohir.A06G148600' => 'ghi', 'Gohir.A07G115800' => 'ghi', 'Gohir.A08G003600' => 'ghi', 'Gohir.A09G093300' => 'ghi', 'Gohir.A09G105400' => 'ghi', 'Gohir.A09G105500' => 'ghi', 'Gohir.D06G154600' => 'ghi', 'Gohir.D07G120200' => 'ghi', 'Gohir.D08G013900' => 'ghi', 'Gohir.D09G093100' => 'ghi', 'Gohir.D09G102200' => 'ghi', 'Gohir.D09G102300' => 'ghi', 'Gorai.001G129400' => 'gra', 'Gorai.004G008200' => 'gra', 'Gorai.006G109800' => 'gra', 'Gorai.006G119500' => 'gra', 'Gorai.006G121300' => 'gra', 'Gorai.010G180700' => 'gra', 'GSVIVG01012716001' => 'vvi', 'GSVIVG01025118001' => 'vvi', 'GSVIVG01030439001' => 'vvi', 'GSVIVG01031397001' => 'vvi', 'HanXRQChr01g0004201' => 'han', 'HanXRQChr02g0054941' => 'han', 'HanXRQChr05g0141811' => 'han', 'HanXRQChr07g0197751' => 'han', 'HanXRQChr11g0346691' => 'han', 'HanXRQChr13g0396971' => 'han', 'HanXRQChr14g0432951' => 'han', 'HanXRQChr14g0452001' => 'han', 'HanXRQChr15g0496681' => 'han', 'HanXRQChr17g0557491' => 'han', 'HanXRQChr17g0557501' => 'han', 'Haze_06809' => 'cav', 'Haze_12852' => 'cav', 'Haze_15850' => 'cav', 'Haze_23446' => 'cav', 'Haze_23942' => 'cav', 'Haze_23943' => 'cav', 'Hma1.2p1_0091F.1_g046450' => 'hma', 'Hma1.2p1_0128F.1_g059910' => 'hma', 'Hma1.2p1_0249F.1_g102260' => 'hma', 'Hma1.2p1_0453F.1_g156190' => 'hma', 'Hma1.2p1_0695F.1_g204380' => 'hma', 'Hma1.2p1_0749F.1_g212650' => 'hma', 'Hma1.2p1_2156F.1_g315420' => 'hma', 'Hma1.2p1_2686F.1_g326940' => 'hma', 'HPP92_006428' => 'vpl', 'HPP92_012069' => 'vpl', 'HPP92_014129' => 'vpl', 'HPP92_014133' => 'vpl', 'HPP92_017315' => 'vpl', 'HPP92_026445' => 'vpl', 'HPP92_026446' => 'vpl', 'Hund00774' => 'sun', 'Hund07682' => 'sun', 'Hund21413' => 'sun', 'Hund23462' => 'sun', 'Hund23463' => 'sun', 'Lalb_Chr03g0027911' => 'lal', 'Lalb_Chr13g0304271' => 'lal', 'Lalb_Chr19g0137471' => 'lal', 'Lalb_Chr22g0350651' => 'lal', 'Lalb_Chr24g0395151' => 'lal', 'Lj1A1231T40' => 'lonja', 'Lj1A221T48' => 'lonja', 'Lj1C924T12' => 'lonja', 'Lj2C993G6' => 'lonja', 'Lj3g0005790' => 'lja', 'Lj3g0015432' => 'lja', 'Lj3g0017722' => 'lja', 'Lj3g0018497' => 'lja', 'Lj4g0025071' => 'lja', 'Lsat_1_v5_gn_1_129680' => 'lsa', 'Lsat_1_v5_gn_2_25321' => 'lsa', 'Lsat_1_v5_gn_2_95461' => 'lsa', 'Lsat_1_v5_gn_4_159620' => 'lsa', 'Lsat_1_v5_gn_6_41301' => 'lsa', 'Lsat_1_v5_gn_6_74660' => 'lsa', 'Lsat_1_v5_gn_7_11520' => 'lsa', 'Lsat_1_v5_gn_9_67680' => 'lsa', 'Manes.04G008300' => 'mes', 'Manes.04G008400' => 'mes', 'Manes.04G026500' => 'mes', 'Manes.10G135300' => 'mes', 'Manes.11G157300' => 'mes', 'Manes.12G074000' => 'mes', 'Manes.16G006200' => 'mes', 'Manes.17G026400' => 'mes', 'Mapoly0024s0086' => 'mpo', 'Mapoly0024s0087' => 'mpo', 'Mapoly0071s0057' => 'mpo', 'Mapoly0204s0012' => 'mpo', 'MBI04_g37681_MAGBIO' => 'mbi', 'MBI05_g17779_MAGBIO' => 'mbi', 'MBI12_g31184_MAGBIO' => 'mbi', 'MBI17_g11083_MAGBIO' => 'mbi', 'MBI18_g03883_MAGBIO' => 'mbi', 'MBI18_g28940_MAGBIO' => 'mbi', 'MCO01G690' => 'mco', 'MD03G1109900' => 'mdo', 'MD03G1134800' => 'mdo', 'MD05G1348000' => 'mdo', 'MD10G1322400' => 'mdo', 'MD11G1123300' => 'mdo', 'MD11G1157600' => 'mdo', 'Medtr2g084875' => 'mtr', 'Medtr2g088130' => 'mtr', 'Medtr4g055310' => 'mtr', 'Medtr4g061070' => 'mtr', 'Medtr4g132250' => 'mtr', 'MELO3C004795.2' => 'cme', 'MELO3C004797.2' => 'cme', 'MELO3C007396.2' => 'cme', 'MELO3C019277.2' => 'cme', 'MELO3C021449.2' => 'cme', 'MELO3C025736.2' => 'cme', 'Migut.D02175' => 'egut', 'Migut.H01573' => 'egut', 'Migut.M01327' => 'egut', 'Migut.N02513' => 'egut', 'MSTRG.14638' => 'ama', 'MSTRG.18632' => 'ama', 'MSTRG.7203' => 'ama', 'Nitab4.5_0000533g0140' => 'nta', 'Nitab4.5_0000888g0150' => 'nta', 'Nitab4.5_0001453g0040' => 'nta', 'Nitab4.5_0002827g0090' => 'nta', 'Nitab4.5_0003082g0040' => 'nta', 'Nitab4.5_0007799g0040' => 'nta', 'Nitab4.5_0008983g0010' => 'nta', 'Nitab4.5_0009017g0020' => 'nta', 'Nn1g02132' => 'nnu', 'Nn1g03492' => 'nnu', 'Nn1g03493' => 'nnu', 'Nn1g03494' => 'nnu', 'Nn1g07164' => 'nnu', 'Nn1g07291' => 'nnu', 'Nn2g10655' => 'nnu', 'Nn2g11652' => 'nnu', 'Nn2g14008' => 'nnu', 'Nn3g17476' => 'nnu', 'Nn3g17477' => 'nnu', 'Nn4g22370' => 'nnu', 'Nn4g25255' => 'nnu', 'Nn5g27755' => 'nnu', 'Nn6g34260' => 'nnu', 'Nn6g35041' => 'nnu', 'Oeu005924.1' => 'oeu', 'Oeu008383.1' => 'oeu', 'Oeu014928.1' => 'oeu', 'Oeu019889.1' => 'oeu', 'Oeu022271.1' => 'oeu', 'Oeu025271.1' => 'oeu', 'Oeu036302.1' => 'oeu', 'Oeu044100.1' => 'oeu', 'Os01g0528300' => 'osa', 'Os03g0286200' => 'osa', 'Os04g0406600' => 'osa', 'Os07g0512000' => 'osa', 'Os07g0694600' => 'osa', 'Os08g0411000' => 'osa', 'Os09g0565700' => 'osa', 'Os09g0566050' => 'osa', 'Os10g0523700' => 'osa', 'Peaxi162Scf00002g00514' => 'pax', 'Peaxi162Scf00047g01817' => 'pax', 'Peaxi162Scf00114g00001' => 'pax', 'Peaxi162Scf00147g00613' => 'pax', 'Peaxi162Scf00389g00425' => 'pax', 'PGR042G1139' => 'pgr', 'PGR042G3273' => 'pgr', 'PGR102G2180' => 'pgr', 'PGR119G0234' => 'pgr', 'PGR119G0668' => 'pgr', 'PGSC0003DMG400007122' => 'stu', 'PGSC0003DMG400016478' => 'stu', 'PGSC0003DMG400025374' => 'stu', 'PGSC0003DMG400026536' => 'stu', 'Phvul.003G079600' => 'pvu', 'Phvul.005G115600' => 'pvu', 'Phvul.005G127100' => 'pvu', 'Phvul.006G149500' => 'pvu', 'Phvul.006G149600' => 'pvu', 'Phvul.011G071800' => 'pvu', 'Phvul.011G090400' => 'pvu', 'Potri.004G013400' => 'ptr', 'Potri.004G188100' => 'ptr', 'Potri.008G195500' => 'ptr', 'Potri.009G148800' => 'ptr', 'Potri.011G004700' => 'ptr', 'Pp3c17_22810' => 'ppa', 'Pp3c18_4480' => 'ppa', 'Pp3c19_13030' => 'ppa', 'Pp3c1_33620' => 'ppa', 'Pp3c2_9380' => 'ppa', 'PRCOL_00001023' => 'pco', 'Prupe.3G216300' => 'ppe', 'Prupe.4G019500' => 'ppe', 'Prupe.6G092500' => 'ppe', 'Prupe.6G119200' => 'ppe', 'Psat0s1945g0080' => 'psa', 'Psat0s4167g0040' => 'psa', 'Psat1g185800' => 'psa', 'Psat4g006440' => 'psa', 'Psat4g006480' => 'psa', 'Psat4g168120' => 'psa', 'Psat5g255680' => 'psa', 'Psat5g261760' => 'psa', 'Psat7g222120' => 'psa', 'PSO063G7252' => 'pso', 'PSO170G4778' => 'pso', 'PSO210G2249' => 'pso', 'PSO339G2411' => 'pso', 'PSO339G2457' => 'pso', 'PSO339G2854' => 'pso', 'PSO339G4288' => 'pso', 'PSO339G4615' => 'pso', 'PSO384G2796' => 'pso', 'PSO384G2940' => 'pso', 'PSO384G4227' => 'pso', 'PSO478G1425' => 'pso', 'PSO541G3863' => 'pso', 'PSO675G0507' => 'pso', 'PSO782G0338' => 'pso', 'PSO832G0644' => 'pso', 'QL01p013664' => 'qlo', 'QL01p036598' => 'qlo', 'QL05p072984' => 'qlo', 'QL08p005768' => 'qlo', 'QL08p032743' => 'qlo', 'QL93p0073_0439' => 'qlo', 'QL93p0073_0444' => 'qlo', 'RcHm_v2.0_Chr5g0002851' => 'rch', 'RcHm_v2.0_Chr5g0055201' => 'rch', 'RcHm_v2.0_Chr5g0061191' => 'rch', 'RcHm_v2.0_Chr7g0203231' => 'rch', 'Rhsim01G0208100' => 'rsi', 'Rhsim01G0208200' => 'rsi', 'Rhsim02G0106500' => 'rsi', 'Rhsim03G0107900' => 'rsi', 'Rhsim06G0163400' => 'rsi', 'Rhsim13G0105200' => 'rsi', 'Sabra04G0006300' => 'sbr', 'Sabra04G0127000' => 'sbr', 'Sabra08G0148700' => 'sbr', 'Sabra09G0117400' => 'sbr', 'SalBow1G3326' => 'sbo', 'SalBow3G3228' => 'sbo', 'SalBow6G1634' => 'sbo', 'SalBow6G3603' => 'sbo', 'SalBow6G5266' => 'sbo', 'SalBow7G2265' => 'sbo', 'SalBow8G0850' => 'sbo', 'SalBow8G2592' => 'sbo', 'Sc05g0009240' => 'sci', 'Sc12g0002300' => 'sci', 'Sc21g0000100' => 'sci', 'Sc21g0004720' => 'sci', 'Sed0002949' => 'sed', 'Sed0004114' => 'sed', 'Sed0004306' => 'sed', 'Sed0006172' => 'sed', 'Sed0008413' => 'sed', 'Sed0013809' => 'sed', 'Sed0019556' => 'sed', 'SEGI_03570' => 'sgi', 'SEGI_07859' => 'sgi', 'SEGI_15042' => 'sgi', 'SEGI_16263' => 'sgi', 'SEGI_16552' => 'sgi', 'SEGI_24331' => 'sgi', 'SEGI_27316' => 'sgi', 'SEGI_29521' => 'sgi', 'SEGI_41342' => 'sgi', 'SGA_v2.0_scaffold27G11617' => 'sas', 'SGA_v2.0_scaffold316G48428' => 'sas', 'SGA_v2.0_scaffold49G18261' => 'sas', 'SGA_v2.0_scaffold7G03831' => 'sas', 'SGA_v2.0_scaffold93G28359' => 'sas', 'SHI02210' => 'shi', 'SHI06028' => 'shi', 'SHI06321' => 'shi', 'SMO111G0012' => 'smo', 'SMO228G0080' => 'smo', 'SMO356G0756' => 'smo', 'Solyc02g080620.3' => 'sly', 'Solyc06g074530.1' => 'sly', 'Solyc11g066890.1' => 'sly', 'Solyc11g072520.3' => 'sly', 'Sopen02g025330' => 'spe', 'Sopen06g031000' => 'spe', 'Sopen09g008240' => 'spe', 'Sopen09g025210' => 'spe', 'Sopen11g026600' => 'spe', 'Sopen11g030170' => 'spe', 'Sp1g10420' => 'spa', 'Sp3g06570' => 'spa', 'Sp4g10660' => 'spa', 'Sp5g16460' => 'spa', 'Sp6g22710' => 'spa', 'TAR365G0112' => 'tar', 'TAR369G0717' => 'tar', 'TAR374G0976' => 'tar', 'TAR623G1128' => 'tar', 'TAR626G1937' => 'tar', 'TAR627G0123' => 'tar', 'TAR628G0305' => 'tar', 'TAR636G1176' => 'tar', 'TAR636G2442' => 'tar', 'THA.LOC104800556' => 'tha', 'THA.LOC104809501' => 'tha', 'THA.LOC104815126' => 'tha', 'THA.LOC104815732' => 'tha', 'THA.LOC104823528' => 'tha', 'Thecc.02G365600' => 'tca', 'Thecc.06G222300' => 'tca', 'Thecc.09G261800' => 'tca', 'Thecc.09G291400' => 'tca', 'Thhalv10003028m.g' => 'esa', 'Thhalv10007886m.g' => 'esa', 'Thhalv10016085m.g' => 'esa', 'Thhalv10016681m.g' => 'esa', 'Thhalv10020951m.g' => 'esa', 'TPR.G15598' => 'tpr', 'TPR.G29305' => 'tpr', 'TPR.G32395' => 'tpr', 'TPR.G36998' => 'tpr', 'TPR.G4227' => 'tpr', 'TWI18G1433' => 'twi', 'TWI31G0755' => 'twi', 'TWI38G0912' => 'twi', 'TWI75G1097' => 'twi', 'TWI75G1619' => 'twi', 'TWI79G1336' => 'twi', 'unitig_0.g943' => 'ugi', 'unitig_0.g944' => 'ugi', 'unitig_22.g6646' => 'ugi', 'unitig_37.g12681' => 'ugi', 'unitig_8.g3290' => 'ugi', 'vmacro03278' => 'vma', 'vmacro12197' => 'vma', 'vmacro14478' => 'vma', 'vmacro15787' => 'vma', 'vmacro15789' => 'vma', 'vmacro15790' => 'vma', 'vmacro15806' => 'vma', 'vmacro22907' => 'vma', 'vmacro22908' => 'vma', 'vmacro22909' => 'vma', 'vmacro23108' => 'vma', 'VMungo0540G0540' => 'vmu', 'VMungo0540G2468' => 'vmu', 'VMungo1080G0390' => 'vmu', 'VMungo1080G1165' => 'vmu', 'VMungo1127G0170' => 'vmu', 'VMungo1127G2099' => 'vmu', 'VMungo1215G3013' => 'vmu', 'Zm00001eb013110' => 'zma', 'Zm00001eb084260' => 'zma', 'Zm00001eb096110' => 'zma', 'Zm00001eb217510' => 'zma', 'Zm00001eb322550' => 'zma', 'Zm00001eb390770' => 'zma', 'Zm00001eb397170' => 'zma', 'Zm00001eb404610' => 'zma', 'Zm00001eb421790' => 'zma' ) $gf_id = 'HOM05D000911' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000911' ) $data_identifier = 'HOM05D000911' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 16, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 5, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 6, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 8, 'nnu' => (int) 16, 'oeu' => (int) 8, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 5, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 16, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421790' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000911', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27780' => 'bna', 'A03p35380' => 'bna', 'A04p21160' => 'bna', 'A05p40570' => 'bna', 'A06p26900' => 'bna', 'A08p33230' => 'bna', 'A09p65960' => 'bna', 'A10p18290' => 'bna', 'Aa31LG1G12990' => 'aar', 'Aa31LG1G2980' => 'aar', 'Aa31LG4G14320' => 'aar', 'Aa31LG7G11800' => 'aar', 'Aa31sc36G50' => 'aar', 'Aa31sc36G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3721' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5459' => 'aag', 'Actinidia03028' => 'ach', 'Actinidia03753' => 'ach', 'Actinidia04187' => 'ach', 'Actinidia05509' => 'ach', 'Actinidia24180' => 'ach', 'Actinidia26906' => 'ach', 'Actinidia37097' => 'ach', 'Actinidia38249' => 'ach', 'Ah.01g003470' => 'amhyb', 'Ah.01g004580' => 'amhyb', 'Ah.01g014850' => 'amhyb', 'Ah.01g016830' => 'amhyb', 'Ah.14g088000' => 'amhyb', 'AL1G22980' => 'aly', 'AL3G18990' => 'aly', 'AL4G22440' => 'aly', 'AL4G33180' => 'aly', 'AL5G22920' => 'aly', 'AL6G33660' => 'aly', 'AL8G20720' => 'aly', 'Aqoxy1G00935' => 'aox', 'Aqoxy1G02094' => 'aox', 'Aqoxy2G01239' => 'aox', 'Aqoxy4G01870' => 'aox', 'Aqoxy7G00450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.36ZVTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71EM27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5D6C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH3WRE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3NCM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RIM768' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YB5YRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z36GDV' => 'arhy', 'AT1G08250' => 'ath', 'AT1G11790' => 'ath', 'AT2G27820' => 'ath', 'AT3G07630' => 'ath', 'AT3G44720' => 'ath', 'AT5G22630' => 'ath', 'ATR0693G304' => 'atr', 'ATR0794G109' => 'atr', 'ATR0820G120' => 'atr', 'ATR1159G064' => 'atr', 'Atru.chr10.2239' => 'acertr', 'Atru.chr3.3371' => 'acertr', 'Atru.chr6.3202' => 'acertr', 'AUR62006499' => 'cqu', 'AUR62012718' => 'cqu', 'AUR62021938' => 'cqu', 'AUR62023932' => 'cqu', 'AUR62025034' => 'cqu', 'AUR62025035' => 'cqu', 'AUR62038307' => 'cqu', 'AUR62043466' => 'cqu', 'BcaB02g10748' => 'bca', 'BcaB03g13231' => 'bca', 'BcaB03g14689' => 'bca', 'BcaB05g22716' => 'bca', 'BcaB06g28172' => 'bca', 'BcaB08g36413' => 'bca', 'BcaC01g02186' => 'bca', 'BcaC01g04272' => 'bca', 'BcaC02g08080' => 'bca', 'BcaC02g08227' => 'bca', 'BcaC03g13901' => 'bca', 'BcaC04g19593' => 'bca', 'BcaC04g20874' => 'bca', 'BcaC05g29557' => 'bca', 'BcaC06g35505' => 'bca', 'BcaC07g41954' => 'bca', 'BcaC07g41955' => 'bca', 'BcaC07g41956' => 'bca', 'BcaC07g42519' => 'bca', 'BcaC07g42520' => 'bca', 'BcaC07g42523' => 'bca', 'BcaC07g42524' => 'bca', 'BcaC07g42525' => 'bca', 'BcaC08g47480' => 'bca', 'BcaC08g47481' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00530' => 'bna', 'BolC2t07178H' => 'bol', 'BolC3t16567H' => 'bol', 'BolC4t27234H' => 'bol', 'BolC5t29728H' => 'bol', 'BolC5t34622H' => 'bol', 'BolC6t40321H' => 'bol', 'BolC7t42028H' => 'bol', 'BolC8t49125H' => 'bol', 'BolC8t52538H' => 'bol', 'BolC8t52539H' => 'bol', 'BolC9t56681H' => 'bol', 'BolC9t58266H' => 'bol', 'BolSC21t60294H' => 'bol', 'BraA02t05670Z' => 'bra', 'BraA03t12716Z' => 'bra', 'BraA04t17685Z' => 'bra', 'BraA05t22788Z' => 'bra', 'BraA06t24032Z' => 'bra', 'BraA06t25625Z' => 'bra', 'BraA07t27930Z' => 'bra', 'BraA08t35242Z' => 'bra', 'BraA09t38609Z' => 'bra', 'BraA10t43905Z' => 'bra', 'C02p11060' => 'bna', 'C03p42990' => 'bna', 'C03p67310' => 'bna', 'C04p56990' => 'bna', 'C04p58660' => 'bna', 'C05p09890' => 'bna', 'C05p59680' => 'bna', 'C06p19830' => 'bna', 'C06p53040' => 'bna', 'C07p15230' => 'bna', 'C08p50070' => 'bna', 'C08p50090' => 'bna', 'C09p38330' => 'bna', 'C09p53940' => 'bna', 'CAN.G1014.1' => 'can', 'CAN.G644.30' => 'can', 'CAN.G84.47' => 'can', 'CAN.G919.8' => 'can', 'CANSAT54G0113' => 'cansat', 'CANSAT54G1286' => 'cansat', 'CANSAT64G1020' => 'cansat', 'CARHR008080' => 'chi', 'CARHR008090' => 'chi', 'CARHR012130' => 'chi', 'CARHR038390' => 'chi', 'CARHR082330' => 'chi', 'CARHR120520' => 'chi', 'CARHR151470' => 'chi', 'CARHR190950' => 'chi', 'Carub.0001s0760' => 'cru', 'Carub.0001s1146' => 'cru', 'Carub.0003s0721' => 'cru', 'Carub.0004s0858' => 'cru', 'Carub.0005s1040' => 'cru', 'Carub.0006s2035' => 'cru', 'Carub.0015s0005' => 'cru', 'Ca_01607_v3' => 'car', 'Ca_01677_v3' => 'car', 'Ca_06087_v3' => 'car', 'Ca_19238_v3' => 'car', 'Ca_19373_v3' => 'car', 'Ca_21079_v3' => 'car', 'CBR_g54016' => 'cbr', 'CBR_g54018' => 'cbr', 'CBR_g54020' => 'cbr', 'Cc01_g09780' => 'ccan', 'Cc01_g11680' => 'ccan', 'Cc02_g15610' => 'ccan', 'Cc05_g04350' => 'ccan', 'Cc09_g01580' => 'ccan', 'CDE01G0795' => 'cde', 'CDE02G2024' => 'cde', 'CDE02G2260' => 'cde', 'CDE02G4561' => 'cde', 'CDE05G2733' => 'cde', 'CDE05G3422' => 'cde', 'CDE06G2003' => 'cde', 'CDE08G0576' => 'cde', 'CDE09G0048' => 'cde', 'CDE11G0805' => 'cde', 'Cfa003644' => 'cfa', 'Cfa006290' => 'cfa', 'Cfa010080' => 'cfa', 'Cfa011376' => 'cfa', 'Cfa011576' => 'cfa', 'Cfa011577' => 'cfa', 'Cfa014389' => 'cfa', 'Ciclev10006044m.g' => 'ccl', 'Ciclev10006954m.g' => 'ccl', 'Ciclev10015131m.g' => 'ccl', 'Ciclev10015580m.g' => 'ccl', 'Ciclev10028359m.g' => 'ccl', 'Ciclev10028573m.g' => 'ccl', 'CiPaw.03G159300' => 'cil', 'CiPaw.04G115100' => 'cil', 'CiPaw.09G092800' => 'cil', 'CiPaw.10G071800' => 'cil', 'CiPaw.13G105800' => 'cil', 'CiPaw.13G141000' => 'cil', 'CiPaw.14G103400' => 'cil', 'ClCG01G012700' => 'cla', 'ClCG01G012720' => 'cla', 'ClCG01G021920' => 'cla', 'ClCG02G008870' => 'cla', 'ClCG02G020840' => 'cla', 'ClCG02G021930' => 'cla', 'COL.COLO4_19302' => 'col', 'COL.COLO4_25262' => 'col', 'COL.COLO4_31788' => 'col', 'Cpa.g.c34684' => 'cpa', 'Cpa.g.c36520.1' => 'cpa', 'Cpa.g.c45626' => 'cpa', 'Cpa.g.sc121.17' => 'cpa', 'Cpa.g.sc13.22' => 'cpa', 'Cpa.g.sc87.88' => 'cpa', 'Cre06.g261800' => 'cre', 'CsaV3_1G014500' => 'csa', 'CsaV3_1G014510' => 'csa', 'CsaV3_2G034880' => 'csa', 'CsaV3_6G014760' => 'csa', 'CsaV3_6G021500' => 'csa', 'CsaV3_6G048980' => 'csa', 'CSS0002511' => 'camsi', 'CSS0007556' => 'camsi', 'CSS0008532' => 'camsi', 'CSS0009709' => 'camsi', 'CSS0010486' => 'camsi', 'CSS0016768' => 'camsi', 'CSS0023512' => 'camsi', 'CSS0025341' => 'camsi', 'CSS0027999' => 'camsi', 'CSS0028944' => 'camsi', 'CSS0032292' => 'camsi', 'CSS0032464' => 'camsi', 'CSS0037153' => 'camsi', 'CSS0039256' => 'camsi', 'CSS0048392' => 'camsi', 'CSS0050458' => 'camsi', 'DCAR_004224' => 'dca', 'DCAR_006147' => 'dca', 'DCAR_006465' => 'dca', 'DCAR_008159' => 'dca', 'DCAR_012164' => 'dca', 'DCAR_019764' => 'dca', 'Dinv05418' => 'din', 'Dinv10839' => 'din', 'Dinv12521' => 'din', 'Dinv13900' => 'din', 'Dinv29426' => 'din', 'Duzib150G0263' => 'dzi', 'Duzib168G1178' => 'dzi', 'Duzib168G1924' => 'dzi', 'Duzib170G0299' => 'dzi', 'Duzib170G0813' => 'dzi', 'Duzib235G1128' => 'dzi', 'Duzib248G1060' => 'dzi', 'ECA232G1910' => 'eca', 'ECA233G4621' => 'eca', 'ECA238G1216' => 'eca', 'ECA238G1784' => 'eca', 'ECA248G1242' => 'eca', 'EL10Ac8g20071' => 'bvu', 'EL10Ac9g21086' => 'bvu', 'EL10Ac9g22407' => 'bvu', 'EL10Ac9g22412' => 'bvu', 'Eucgr.A01119' => 'egr', 'Eucgr.E04043' => 'egr', 'Eucgr.J00428' => 'egr', 'Eucgr.J00958' => 'egr', 'FAN11G3091' => 'fan', 'FAN11G3651' => 'fan', 'FAN16G2566' => 'fan', 'FAN21G3155' => 'fan', 'FAN21G3400' => 'fan', 'FAN21G3543' => 'fan', 'FAN25G0234' => 'fan', 'FAN25G1422' => 'fan', 'FAN25G3392' => 'fan', 'FvH4_3g01940' => 'fve', 'FvH4_3g29870' => 'fve', 'FvH4_3g33680' => 'fve', 'Glyma.09G004200' => 'gma', 'Glyma.11G151288' => 'gma', 'Glyma.11G189100' => 'gma', 'Glyma.12G072500' => 'gma', 'Glyma.12G085500' => 'gma', 'Glyma.12G181800' => 'gma', 'Glyma.12G193000' => 'gma', 'Glyma.13G309300' => 'gma', 'Glyma.13G319000' => 'gma', 'Glyma.17G012600' => 'gma', 'Gohir.A06G148600' => 'ghi', 'Gohir.A07G115800' => 'ghi', 'Gohir.A08G003600' => 'ghi', 'Gohir.A09G093300' => 'ghi', 'Gohir.A09G105400' => 'ghi', 'Gohir.A09G105500' => 'ghi', 'Gohir.D06G154600' => 'ghi', 'Gohir.D07G120200' => 'ghi', 'Gohir.D08G013900' => 'ghi', 'Gohir.D09G093100' => 'ghi', 'Gohir.D09G102200' => 'ghi', 'Gohir.D09G102300' => 'ghi', 'Gorai.001G129400' => 'gra', 'Gorai.004G008200' => 'gra', 'Gorai.006G109800' => 'gra', 'Gorai.006G119500' => 'gra', 'Gorai.006G121300' => 'gra', 'Gorai.010G180700' => 'gra', 'GSVIVG01012716001' => 'vvi', 'GSVIVG01025118001' => 'vvi', 'GSVIVG01030439001' => 'vvi', 'GSVIVG01031397001' => 'vvi', 'HanXRQChr01g0004201' => 'han', 'HanXRQChr02g0054941' => 'han', 'HanXRQChr05g0141811' => 'han', 'HanXRQChr07g0197751' => 'han', 'HanXRQChr11g0346691' => 'han', 'HanXRQChr13g0396971' => 'han', 'HanXRQChr14g0432951' => 'han', 'HanXRQChr14g0452001' => 'han', 'HanXRQChr15g0496681' => 'han', 'HanXRQChr17g0557491' => 'han', 'HanXRQChr17g0557501' => 'han', 'Haze_06809' => 'cav', 'Haze_12852' => 'cav', 'Haze_15850' => 'cav', 'Haze_23446' => 'cav', 'Haze_23942' => 'cav', 'Haze_23943' => 'cav', 'Hma1.2p1_0091F.1_g046450' => 'hma', 'Hma1.2p1_0128F.1_g059910' => 'hma', 'Hma1.2p1_0249F.1_g102260' => 'hma', 'Hma1.2p1_0453F.1_g156190' => 'hma', 'Hma1.2p1_0695F.1_g204380' => 'hma', 'Hma1.2p1_0749F.1_g212650' => 'hma', 'Hma1.2p1_2156F.1_g315420' => 'hma', 'Hma1.2p1_2686F.1_g326940' => 'hma', 'HPP92_006428' => 'vpl', 'HPP92_012069' => 'vpl', 'HPP92_014129' => 'vpl', 'HPP92_014133' => 'vpl', 'HPP92_017315' => 'vpl', 'HPP92_026445' => 'vpl', 'HPP92_026446' => 'vpl', 'Hund00774' => 'sun', 'Hund07682' => 'sun', 'Hund21413' => 'sun', 'Hund23462' => 'sun', 'Hund23463' => 'sun', 'Lalb_Chr03g0027911' => 'lal', 'Lalb_Chr13g0304271' => 'lal', 'Lalb_Chr19g0137471' => 'lal', 'Lalb_Chr22g0350651' => 'lal', 'Lalb_Chr24g0395151' => 'lal', 'Lj1A1231T40' => 'lonja', 'Lj1A221T48' => 'lonja', 'Lj1C924T12' => 'lonja', 'Lj2C993G6' => 'lonja', 'Lj3g0005790' => 'lja', 'Lj3g0015432' => 'lja', 'Lj3g0017722' => 'lja', 'Lj3g0018497' => 'lja', 'Lj4g0025071' => 'lja', 'Lsat_1_v5_gn_1_129680' => 'lsa', 'Lsat_1_v5_gn_2_25321' => 'lsa', 'Lsat_1_v5_gn_2_95461' => 'lsa', 'Lsat_1_v5_gn_4_159620' => 'lsa', 'Lsat_1_v5_gn_6_41301' => 'lsa', 'Lsat_1_v5_gn_6_74660' => 'lsa', 'Lsat_1_v5_gn_7_11520' => 'lsa', 'Lsat_1_v5_gn_9_67680' => 'lsa', 'Manes.04G008300' => 'mes', 'Manes.04G008400' => 'mes', 'Manes.04G026500' => 'mes', 'Manes.10G135300' => 'mes', 'Manes.11G157300' => 'mes', 'Manes.12G074000' => 'mes', 'Manes.16G006200' => 'mes', 'Manes.17G026400' => 'mes', 'Mapoly0024s0086' => 'mpo', 'Mapoly0024s0087' => 'mpo', 'Mapoly0071s0057' => 'mpo', 'Mapoly0204s0012' => 'mpo', 'MBI04_g37681_MAGBIO' => 'mbi', 'MBI05_g17779_MAGBIO' => 'mbi', 'MBI12_g31184_MAGBIO' => 'mbi', 'MBI17_g11083_MAGBIO' => 'mbi', 'MBI18_g03883_MAGBIO' => 'mbi', 'MBI18_g28940_MAGBIO' => 'mbi', 'MCO01G690' => 'mco', 'MD03G1109900' => 'mdo', 'MD03G1134800' => 'mdo', 'MD05G1348000' => 'mdo', 'MD10G1322400' => 'mdo', 'MD11G1123300' => 'mdo', 'MD11G1157600' => 'mdo', 'Medtr2g084875' => 'mtr', 'Medtr2g088130' => 'mtr', 'Medtr4g055310' => 'mtr', 'Medtr4g061070' => 'mtr', 'Medtr4g132250' => 'mtr', 'MELO3C004795.2' => 'cme', 'MELO3C004797.2' => 'cme', 'MELO3C007396.2' => 'cme', 'MELO3C019277.2' => 'cme', 'MELO3C021449.2' => 'cme', 'MELO3C025736.2' => 'cme', 'Migut.D02175' => 'egut', 'Migut.H01573' => 'egut', 'Migut.M01327' => 'egut', 'Migut.N02513' => 'egut', 'MSTRG.14638' => 'ama', 'MSTRG.18632' => 'ama', 'MSTRG.7203' => 'ama', 'Nitab4.5_0000533g0140' => 'nta', 'Nitab4.5_0000888g0150' => 'nta', 'Nitab4.5_0001453g0040' => 'nta', 'Nitab4.5_0002827g0090' => 'nta', 'Nitab4.5_0003082g0040' => 'nta', 'Nitab4.5_0007799g0040' => 'nta', 'Nitab4.5_0008983g0010' => 'nta', 'Nitab4.5_0009017g0020' => 'nta', 'Nn1g02132' => 'nnu', 'Nn1g03492' => 'nnu', 'Nn1g03493' => 'nnu', 'Nn1g03494' => 'nnu', 'Nn1g07164' => 'nnu', 'Nn1g07291' => 'nnu', 'Nn2g10655' => 'nnu', 'Nn2g11652' => 'nnu', 'Nn2g14008' => 'nnu', 'Nn3g17476' => 'nnu', 'Nn3g17477' => 'nnu', 'Nn4g22370' => 'nnu', 'Nn4g25255' => 'nnu', 'Nn5g27755' => 'nnu', 'Nn6g34260' => 'nnu', 'Nn6g35041' => 'nnu', 'Oeu005924.1' => 'oeu', 'Oeu008383.1' => 'oeu', 'Oeu014928.1' => 'oeu', 'Oeu019889.1' => 'oeu', 'Oeu022271.1' => 'oeu', 'Oeu025271.1' => 'oeu', 'Oeu036302.1' => 'oeu', 'Oeu044100.1' => 'oeu', 'Os01g0528300' => 'osa', 'Os03g0286200' => 'osa', 'Os04g0406600' => 'osa', 'Os07g0512000' => 'osa', 'Os07g0694600' => 'osa', 'Os08g0411000' => 'osa', 'Os09g0565700' => 'osa', 'Os09g0566050' => 'osa', 'Os10g0523700' => 'osa', 'Peaxi162Scf00002g00514' => 'pax', 'Peaxi162Scf00047g01817' => 'pax', 'Peaxi162Scf00114g00001' => 'pax', 'Peaxi162Scf00147g00613' => 'pax', 'Peaxi162Scf00389g00425' => 'pax', 'PGR042G1139' => 'pgr', 'PGR042G3273' => 'pgr', 'PGR102G2180' => 'pgr', 'PGR119G0234' => 'pgr', 'PGR119G0668' => 'pgr', 'PGSC0003DMG400007122' => 'stu', 'PGSC0003DMG400016478' => 'stu', 'PGSC0003DMG400025374' => 'stu', 'PGSC0003DMG400026536' => 'stu', 'Phvul.003G079600' => 'pvu', 'Phvul.005G115600' => 'pvu', 'Phvul.005G127100' => 'pvu', 'Phvul.006G149500' => 'pvu', 'Phvul.006G149600' => 'pvu', 'Phvul.011G071800' => 'pvu', 'Phvul.011G090400' => 'pvu', 'Potri.004G013400' => 'ptr', 'Potri.004G188100' => 'ptr', 'Potri.008G195500' => 'ptr', 'Potri.009G148800' => 'ptr', 'Potri.011G004700' => 'ptr', 'Pp3c17_22810' => 'ppa', 'Pp3c18_4480' => 'ppa', 'Pp3c19_13030' => 'ppa', 'Pp3c1_33620' => 'ppa', 'Pp3c2_9380' => 'ppa', 'PRCOL_00001023' => 'pco', 'Prupe.3G216300' => 'ppe', 'Prupe.4G019500' => 'ppe', 'Prupe.6G092500' => 'ppe', 'Prupe.6G119200' => 'ppe', 'Psat0s1945g0080' => 'psa', 'Psat0s4167g0040' => 'psa', 'Psat1g185800' => 'psa', 'Psat4g006440' => 'psa', 'Psat4g006480' => 'psa', 'Psat4g168120' => 'psa', 'Psat5g255680' => 'psa', 'Psat5g261760' => 'psa', 'Psat7g222120' => 'psa', 'PSO063G7252' => 'pso', 'PSO170G4778' => 'pso', 'PSO210G2249' => 'pso', 'PSO339G2411' => 'pso', 'PSO339G2457' => 'pso', 'PSO339G2854' => 'pso', 'PSO339G4288' => 'pso', 'PSO339G4615' => 'pso', 'PSO384G2796' => 'pso', 'PSO384G2940' => 'pso', 'PSO384G4227' => 'pso', 'PSO478G1425' => 'pso', 'PSO541G3863' => 'pso', 'PSO675G0507' => 'pso', 'PSO782G0338' => 'pso', 'PSO832G0644' => 'pso', 'QL01p013664' => 'qlo', 'QL01p036598' => 'qlo', 'QL05p072984' => 'qlo', 'QL08p005768' => 'qlo', 'QL08p032743' => 'qlo', 'QL93p0073_0439' => 'qlo', 'QL93p0073_0444' => 'qlo', 'RcHm_v2.0_Chr5g0002851' => 'rch', 'RcHm_v2.0_Chr5g0055201' => 'rch', 'RcHm_v2.0_Chr5g0061191' => 'rch', 'RcHm_v2.0_Chr7g0203231' => 'rch', 'Rhsim01G0208100' => 'rsi', 'Rhsim01G0208200' => 'rsi', 'Rhsim02G0106500' => 'rsi', 'Rhsim03G0107900' => 'rsi', 'Rhsim06G0163400' => 'rsi', 'Rhsim13G0105200' => 'rsi', 'Sabra04G0006300' => 'sbr', 'Sabra04G0127000' => 'sbr', 'Sabra08G0148700' => 'sbr', 'Sabra09G0117400' => 'sbr', 'SalBow1G3326' => 'sbo', 'SalBow3G3228' => 'sbo', 'SalBow6G1634' => 'sbo', 'SalBow6G3603' => 'sbo', 'SalBow6G5266' => 'sbo', 'SalBow7G2265' => 'sbo', 'SalBow8G0850' => 'sbo', 'SalBow8G2592' => 'sbo', 'Sc05g0009240' => 'sci', 'Sc12g0002300' => 'sci', 'Sc21g0000100' => 'sci', 'Sc21g0004720' => 'sci', 'Sed0002949' => 'sed', 'Sed0004114' => 'sed', 'Sed0004306' => 'sed', 'Sed0006172' => 'sed', 'Sed0008413' => 'sed', 'Sed0013809' => 'sed', 'Sed0019556' => 'sed', 'SEGI_03570' => 'sgi', 'SEGI_07859' => 'sgi', 'SEGI_15042' => 'sgi', 'SEGI_16263' => 'sgi', 'SEGI_16552' => 'sgi', 'SEGI_24331' => 'sgi', 'SEGI_27316' => 'sgi', 'SEGI_29521' => 'sgi', 'SEGI_41342' => 'sgi', 'SGA_v2.0_scaffold27G11617' => 'sas', 'SGA_v2.0_scaffold316G48428' => 'sas', 'SGA_v2.0_scaffold49G18261' => 'sas', 'SGA_v2.0_scaffold7G03831' => 'sas', 'SGA_v2.0_scaffold93G28359' => 'sas', 'SHI02210' => 'shi', 'SHI06028' => 'shi', 'SHI06321' => 'shi', 'SMO111G0012' => 'smo', 'SMO228G0080' => 'smo', 'SMO356G0756' => 'smo', 'Solyc02g080620.3' => 'sly', 'Solyc06g074530.1' => 'sly', 'Solyc11g066890.1' => 'sly', 'Solyc11g072520.3' => 'sly', 'Sopen02g025330' => 'spe', 'Sopen06g031000' => 'spe', 'Sopen09g008240' => 'spe', 'Sopen09g025210' => 'spe', 'Sopen11g026600' => 'spe', 'Sopen11g030170' => 'spe', 'Sp1g10420' => 'spa', 'Sp3g06570' => 'spa', 'Sp4g10660' => 'spa', 'Sp5g16460' => 'spa', 'Sp6g22710' => 'spa', 'TAR365G0112' => 'tar', 'TAR369G0717' => 'tar', 'TAR374G0976' => 'tar', 'TAR623G1128' => 'tar', 'TAR626G1937' => 'tar', 'TAR627G0123' => 'tar', 'TAR628G0305' => 'tar', 'TAR636G1176' => 'tar', 'TAR636G2442' => 'tar', 'THA.LOC104800556' => 'tha', 'THA.LOC104809501' => 'tha', 'THA.LOC104815126' => 'tha', 'THA.LOC104815732' => 'tha', 'THA.LOC104823528' => 'tha', 'Thecc.02G365600' => 'tca', 'Thecc.06G222300' => 'tca', 'Thecc.09G261800' => 'tca', 'Thecc.09G291400' => 'tca', 'Thhalv10003028m.g' => 'esa', 'Thhalv10007886m.g' => 'esa', 'Thhalv10016085m.g' => 'esa', 'Thhalv10016681m.g' => 'esa', 'Thhalv10020951m.g' => 'esa', 'TPR.G15598' => 'tpr', 'TPR.G29305' => 'tpr', 'TPR.G32395' => 'tpr', 'TPR.G36998' => 'tpr', 'TPR.G4227' => 'tpr', 'TWI18G1433' => 'twi', 'TWI31G0755' => 'twi', 'TWI38G0912' => 'twi', 'TWI75G1097' => 'twi', 'TWI75G1619' => 'twi', 'TWI79G1336' => 'twi', 'unitig_0.g943' => 'ugi', 'unitig_0.g944' => 'ugi', 'unitig_22.g6646' => 'ugi', 'unitig_37.g12681' => 'ugi', 'unitig_8.g3290' => 'ugi', 'vmacro03278' => 'vma', 'vmacro12197' => 'vma', 'vmacro14478' => 'vma', 'vmacro15787' => 'vma', 'vmacro15789' => 'vma', 'vmacro15790' => 'vma', 'vmacro15806' => 'vma', 'vmacro22907' => 'vma', 'vmacro22908' => 'vma', 'vmacro22909' => 'vma', 'vmacro23108' => 'vma', 'VMungo0540G0540' => 'vmu', 'VMungo0540G2468' => 'vmu', 'VMungo1080G0390' => 'vmu', 'VMungo1080G1165' => 'vmu', 'VMungo1127G0170' => 'vmu', 'VMungo1127G2099' => 'vmu', 'VMungo1215G3013' => 'vmu', 'Zm00001eb013110' => 'zma', 'Zm00001eb084260' => 'zma', 'Zm00001eb096110' => 'zma', 'Zm00001eb217510' => 'zma', 'Zm00001eb322550' => 'zma', 'Zm00001eb390770' => 'zma', 'Zm00001eb397170' => 'zma', 'Zm00001eb404610' => 'zma', 'Zm00001eb421790' => 'zma' ), 'gf_id' => 'HOM05D000911', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000911' ), 'data_identifier' => 'HOM05D000911', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000911', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27780' => 'bna', 'A03p35380' => 'bna', 'A04p21160' => 'bna', 'A05p40570' => 'bna', 'A06p26900' => 'bna', 'A08p33230' => 'bna', 'A09p65960' => 'bna', 'A10p18290' => 'bna', 'Aa31LG1G12990' => 'aar', 'Aa31LG1G2980' => 'aar', 'Aa31LG4G14320' => 'aar', 'Aa31LG7G11800' => 'aar', 'Aa31sc36G50' => 'aar', 'Aa31sc36G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3721' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5459' => 'aag', 'Actinidia03028' => 'ach', 'Actinidia03753' => 'ach', 'Actinidia04187' => 'ach', 'Actinidia05509' => 'ach', 'Actinidia24180' => 'ach', 'Actinidia26906' => 'ach', 'Actinidia37097' => 'ach', 'Actinidia38249' => 'ach', 'Ah.01g003470' => 'amhyb', 'Ah.01g004580' => 'amhyb', 'Ah.01g014850' => 'amhyb', 'Ah.01g016830' => 'amhyb', 'Ah.14g088000' => 'amhyb', 'AL1G22980' => 'aly', 'AL3G18990' => 'aly', 'AL4G22440' => 'aly', 'AL4G33180' => 'aly', 'AL5G22920' => 'aly', 'AL6G33660' => 'aly', 'AL8G20720' => 'aly', 'Aqoxy1G00935' => 'aox', 'Aqoxy1G02094' => 'aox', 'Aqoxy2G01239' => 'aox', 'Aqoxy4G01870' => 'aox', 'Aqoxy7G00450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.36ZVTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71EM27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5D6C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH3WRE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3NCM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RIM768' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YB5YRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z36GDV' => 'arhy', 'AT1G08250' => 'ath', 'AT1G11790' => 'ath', 'AT2G27820' => 'ath', 'AT3G07630' => 'ath', 'AT3G44720' => 'ath', 'AT5G22630' => 'ath', 'ATR0693G304' => 'atr', 'ATR0794G109' => 'atr', 'ATR0820G120' => 'atr', 'ATR1159G064' => 'atr', 'Atru.chr10.2239' => 'acertr', 'Atru.chr3.3371' => 'acertr', 'Atru.chr6.3202' => 'acertr', 'AUR62006499' => 'cqu', 'AUR62012718' => 'cqu', 'AUR62021938' => 'cqu', 'AUR62023932' => 'cqu', 'AUR62025034' => 'cqu', 'AUR62025035' => 'cqu', 'AUR62038307' => 'cqu', 'AUR62043466' => 'cqu', 'BcaB02g10748' => 'bca', 'BcaB03g13231' => 'bca', 'BcaB03g14689' => 'bca', 'BcaB05g22716' => 'bca', 'BcaB06g28172' => 'bca', 'BcaB08g36413' => 'bca', 'BcaC01g02186' => 'bca', 'BcaC01g04272' => 'bca', 'BcaC02g08080' => 'bca', 'BcaC02g08227' => 'bca', 'BcaC03g13901' => 'bca', 'BcaC04g19593' => 'bca', 'BcaC04g20874' => 'bca', 'BcaC05g29557' => 'bca', 'BcaC06g35505' => 'bca', 'BcaC07g41954' => 'bca', 'BcaC07g41955' => 'bca', 'BcaC07g41956' => 'bca', 'BcaC07g42519' => 'bca', 'BcaC07g42520' => 'bca', 'BcaC07g42523' => 'bca', 'BcaC07g42524' => 'bca', 'BcaC07g42525' => 'bca', 'BcaC08g47480' => 'bca', 'BcaC08g47481' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00530' => 'bna', 'BolC2t07178H' => 'bol', 'BolC3t16567H' => 'bol', 'BolC4t27234H' => 'bol', 'BolC5t29728H' => 'bol', 'BolC5t34622H' => 'bol', 'BolC6t40321H' => 'bol', 'BolC7t42028H' => 'bol', 'BolC8t49125H' => 'bol', 'BolC8t52538H' => 'bol', 'BolC8t52539H' => 'bol', 'BolC9t56681H' => 'bol', 'BolC9t58266H' => 'bol', 'BolSC21t60294H' => 'bol', 'BraA02t05670Z' => 'bra', 'BraA03t12716Z' => 'bra', 'BraA04t17685Z' => 'bra', 'BraA05t22788Z' => 'bra', 'BraA06t24032Z' => 'bra', 'BraA06t25625Z' => 'bra', 'BraA07t27930Z' => 'bra', 'BraA08t35242Z' => 'bra', 'BraA09t38609Z' => 'bra', 'BraA10t43905Z' => 'bra', 'C02p11060' => 'bna', 'C03p42990' => 'bna', 'C03p67310' => 'bna', 'C04p56990' => 'bna', 'C04p58660' => 'bna', 'C05p09890' => 'bna', 'C05p59680' => 'bna', 'C06p19830' => 'bna', 'C06p53040' => 'bna', 'C07p15230' => 'bna', 'C08p50070' => 'bna', 'C08p50090' => 'bna', 'C09p38330' => 'bna', 'C09p53940' => 'bna', 'CAN.G1014.1' => 'can', 'CAN.G644.30' => 'can', 'CAN.G84.47' => 'can', 'CAN.G919.8' => 'can', 'CANSAT54G0113' => 'cansat', 'CANSAT54G1286' => 'cansat', 'CANSAT64G1020' => 'cansat', 'CARHR008080' => 'chi', 'CARHR008090' => 'chi', 'CARHR012130' => 'chi', 'CARHR038390' => 'chi', 'CARHR082330' => 'chi', 'CARHR120520' => 'chi', 'CARHR151470' => 'chi', 'CARHR190950' => 'chi', 'Carub.0001s0760' => 'cru', 'Carub.0001s1146' => 'cru', 'Carub.0003s0721' => 'cru', 'Carub.0004s0858' => 'cru', 'Carub.0005s1040' => 'cru', 'Carub.0006s2035' => 'cru', 'Carub.0015s0005' => 'cru', 'Ca_01607_v3' => 'car', 'Ca_01677_v3' => 'car', 'Ca_06087_v3' => 'car', 'Ca_19238_v3' => 'car', 'Ca_19373_v3' => 'car', 'Ca_21079_v3' => 'car', 'CBR_g54016' => 'cbr', 'CBR_g54018' => 'cbr', 'CBR_g54020' => 'cbr', 'Cc01_g09780' => 'ccan', 'Cc01_g11680' => 'ccan', 'Cc02_g15610' => 'ccan', 'Cc05_g04350' => 'ccan', 'Cc09_g01580' => 'ccan', 'CDE01G0795' => 'cde', 'CDE02G2024' => 'cde', 'CDE02G2260' => 'cde', 'CDE02G4561' => 'cde', 'CDE05G2733' => 'cde', 'CDE05G3422' => 'cde', 'CDE06G2003' => 'cde', 'CDE08G0576' => 'cde', 'CDE09G0048' => 'cde', 'CDE11G0805' => 'cde', 'Cfa003644' => 'cfa', 'Cfa006290' => 'cfa', 'Cfa010080' => 'cfa', 'Cfa011376' => 'cfa', 'Cfa011576' => 'cfa', 'Cfa011577' => 'cfa', 'Cfa014389' => 'cfa', 'Ciclev10006044m.g' => 'ccl', 'Ciclev10006954m.g' => 'ccl', 'Ciclev10015131m.g' => 'ccl', 'Ciclev10015580m.g' => 'ccl', 'Ciclev10028359m.g' => 'ccl', 'Ciclev10028573m.g' => 'ccl', 'CiPaw.03G159300' => 'cil', 'CiPaw.04G115100' => 'cil', 'CiPaw.09G092800' => 'cil', 'CiPaw.10G071800' => 'cil', 'CiPaw.13G105800' => 'cil', 'CiPaw.13G141000' => 'cil', 'CiPaw.14G103400' => 'cil', 'ClCG01G012700' => 'cla', 'ClCG01G012720' => 'cla', 'ClCG01G021920' => 'cla', 'ClCG02G008870' => 'cla', 'ClCG02G020840' => 'cla', 'ClCG02G021930' => 'cla', 'COL.COLO4_19302' => 'col', 'COL.COLO4_25262' => 'col', 'COL.COLO4_31788' => 'col', 'Cpa.g.c34684' => 'cpa', 'Cpa.g.c36520.1' => 'cpa', 'Cpa.g.c45626' => 'cpa', 'Cpa.g.sc121.17' => 'cpa', 'Cpa.g.sc13.22' => 'cpa', 'Cpa.g.sc87.88' => 'cpa', 'Cre06.g261800' => 'cre', 'CsaV3_1G014500' => 'csa', 'CsaV3_1G014510' => 'csa', 'CsaV3_2G034880' => 'csa', 'CsaV3_6G014760' => 'csa', 'CsaV3_6G021500' => 'csa', 'CsaV3_6G048980' => 'csa', 'CSS0002511' => 'camsi', 'CSS0007556' => 'camsi', 'CSS0008532' => 'camsi', 'CSS0009709' => 'camsi', 'CSS0010486' => 'camsi', 'CSS0016768' => 'camsi', 'CSS0023512' => 'camsi', 'CSS0025341' => 'camsi', 'CSS0027999' => 'camsi', 'CSS0028944' => 'camsi', 'CSS0032292' => 'camsi', 'CSS0032464' => 'camsi', 'CSS0037153' => 'camsi', 'CSS0039256' => 'camsi', 'CSS0048392' => 'camsi', 'CSS0050458' => 'camsi', 'DCAR_004224' => 'dca', 'DCAR_006147' => 'dca', 'DCAR_006465' => 'dca', 'DCAR_008159' => 'dca', 'DCAR_012164' => 'dca', 'DCAR_019764' => 'dca', 'Dinv05418' => 'din', 'Dinv10839' => 'din', 'Dinv12521' => 'din', 'Dinv13900' => 'din', 'Dinv29426' => 'din', 'Duzib150G0263' => 'dzi', 'Duzib168G1178' => 'dzi', 'Duzib168G1924' => 'dzi', 'Duzib170G0299' => 'dzi', 'Duzib170G0813' => 'dzi', 'Duzib235G1128' => 'dzi', 'Duzib248G1060' => 'dzi', 'ECA232G1910' => 'eca', 'ECA233G4621' => 'eca', 'ECA238G1216' => 'eca', 'ECA238G1784' => 'eca', 'ECA248G1242' => 'eca', 'EL10Ac8g20071' => 'bvu', 'EL10Ac9g21086' => 'bvu', 'EL10Ac9g22407' => 'bvu', 'EL10Ac9g22412' => 'bvu', 'Eucgr.A01119' => 'egr', 'Eucgr.E04043' => 'egr', 'Eucgr.J00428' => 'egr', 'Eucgr.J00958' => 'egr', 'FAN11G3091' => 'fan', 'FAN11G3651' => 'fan', 'FAN16G2566' => 'fan', 'FAN21G3155' => 'fan', 'FAN21G3400' => 'fan', 'FAN21G3543' => 'fan', 'FAN25G0234' => 'fan', 'FAN25G1422' => 'fan', 'FAN25G3392' => 'fan', 'FvH4_3g01940' => 'fve', 'FvH4_3g29870' => 'fve', 'FvH4_3g33680' => 'fve', 'Glyma.09G004200' => 'gma', 'Glyma.11G151288' => 'gma', 'Glyma.11G189100' => 'gma', 'Glyma.12G072500' => 'gma', 'Glyma.12G085500' => 'gma', 'Glyma.12G181800' => 'gma', 'Glyma.12G193000' => 'gma', 'Glyma.13G309300' => 'gma', 'Glyma.13G319000' => 'gma', 'Glyma.17G012600' => 'gma', 'Gohir.A06G148600' => 'ghi', 'Gohir.A07G115800' => 'ghi', 'Gohir.A08G003600' => 'ghi', 'Gohir.A09G093300' => 'ghi', 'Gohir.A09G105400' => 'ghi', 'Gohir.A09G105500' => 'ghi', 'Gohir.D06G154600' => 'ghi', 'Gohir.D07G120200' => 'ghi', 'Gohir.D08G013900' => 'ghi', 'Gohir.D09G093100' => 'ghi', 'Gohir.D09G102200' => 'ghi', 'Gohir.D09G102300' => 'ghi', 'Gorai.001G129400' => 'gra', 'Gorai.004G008200' => 'gra', 'Gorai.006G109800' => 'gra', 'Gorai.006G119500' => 'gra', 'Gorai.006G121300' => 'gra', 'Gorai.010G180700' => 'gra', 'GSVIVG01012716001' => 'vvi', 'GSVIVG01025118001' => 'vvi', 'GSVIVG01030439001' => 'vvi', 'GSVIVG01031397001' => 'vvi', 'HanXRQChr01g0004201' => 'han', 'HanXRQChr02g0054941' => 'han', 'HanXRQChr05g0141811' => 'han', 'HanXRQChr07g0197751' => 'han', 'HanXRQChr11g0346691' => 'han', 'HanXRQChr13g0396971' => 'han', 'HanXRQChr14g0432951' => 'han', 'HanXRQChr14g0452001' => 'han', 'HanXRQChr15g0496681' => 'han', 'HanXRQChr17g0557491' => 'han', 'HanXRQChr17g0557501' => 'han', 'Haze_06809' => 'cav', 'Haze_12852' => 'cav', 'Haze_15850' => 'cav', 'Haze_23446' => 'cav', 'Haze_23942' => 'cav', 'Haze_23943' => 'cav', 'Hma1.2p1_0091F.1_g046450' => 'hma', 'Hma1.2p1_0128F.1_g059910' => 'hma', 'Hma1.2p1_0249F.1_g102260' => 'hma', 'Hma1.2p1_0453F.1_g156190' => 'hma', 'Hma1.2p1_0695F.1_g204380' => 'hma', 'Hma1.2p1_0749F.1_g212650' => 'hma', 'Hma1.2p1_2156F.1_g315420' => 'hma', 'Hma1.2p1_2686F.1_g326940' => 'hma', 'HPP92_006428' => 'vpl', 'HPP92_012069' => 'vpl', 'HPP92_014129' => 'vpl', 'HPP92_014133' => 'vpl', 'HPP92_017315' => 'vpl', 'HPP92_026445' => 'vpl', 'HPP92_026446' => 'vpl', 'Hund00774' => 'sun', 'Hund07682' => 'sun', 'Hund21413' => 'sun', 'Hund23462' => 'sun', 'Hund23463' => 'sun', 'Lalb_Chr03g0027911' => 'lal', 'Lalb_Chr13g0304271' => 'lal', 'Lalb_Chr19g0137471' => 'lal', 'Lalb_Chr22g0350651' => 'lal', 'Lalb_Chr24g0395151' => 'lal', 'Lj1A1231T40' => 'lonja', 'Lj1A221T48' => 'lonja', 'Lj1C924T12' => 'lonja', 'Lj2C993G6' => 'lonja', 'Lj3g0005790' => 'lja', 'Lj3g0015432' => 'lja', 'Lj3g0017722' => 'lja', 'Lj3g0018497' => 'lja', 'Lj4g0025071' => 'lja', 'Lsat_1_v5_gn_1_129680' => 'lsa', 'Lsat_1_v5_gn_2_25321' => 'lsa', 'Lsat_1_v5_gn_2_95461' => 'lsa', 'Lsat_1_v5_gn_4_159620' => 'lsa', 'Lsat_1_v5_gn_6_41301' => 'lsa', 'Lsat_1_v5_gn_6_74660' => 'lsa', 'Lsat_1_v5_gn_7_11520' => 'lsa', 'Lsat_1_v5_gn_9_67680' => 'lsa', 'Manes.04G008300' => 'mes', 'Manes.04G008400' => 'mes', 'Manes.04G026500' => 'mes', 'Manes.10G135300' => 'mes', 'Manes.11G157300' => 'mes', 'Manes.12G074000' => 'mes', 'Manes.16G006200' => 'mes', 'Manes.17G026400' => 'mes', 'Mapoly0024s0086' => 'mpo', 'Mapoly0024s0087' => 'mpo', 'Mapoly0071s0057' => 'mpo', 'Mapoly0204s0012' => 'mpo', 'MBI04_g37681_MAGBIO' => 'mbi', 'MBI05_g17779_MAGBIO' => 'mbi', 'MBI12_g31184_MAGBIO' => 'mbi', 'MBI17_g11083_MAGBIO' => 'mbi', 'MBI18_g03883_MAGBIO' => 'mbi', 'MBI18_g28940_MAGBIO' => 'mbi', 'MCO01G690' => 'mco', 'MD03G1109900' => 'mdo', 'MD03G1134800' => 'mdo', 'MD05G1348000' => 'mdo', 'MD10G1322400' => 'mdo', 'MD11G1123300' => 'mdo', 'MD11G1157600' => 'mdo', 'Medtr2g084875' => 'mtr', 'Medtr2g088130' => 'mtr', 'Medtr4g055310' => 'mtr', 'Medtr4g061070' => 'mtr', 'Medtr4g132250' => 'mtr', 'MELO3C004795.2' => 'cme', 'MELO3C004797.2' => 'cme', 'MELO3C007396.2' => 'cme', 'MELO3C019277.2' => 'cme', 'MELO3C021449.2' => 'cme', 'MELO3C025736.2' => 'cme', 'Migut.D02175' => 'egut', 'Migut.H01573' => 'egut', 'Migut.M01327' => 'egut', 'Migut.N02513' => 'egut', 'MSTRG.14638' => 'ama', 'MSTRG.18632' => 'ama', 'MSTRG.7203' => 'ama', 'Nitab4.5_0000533g0140' => 'nta', 'Nitab4.5_0000888g0150' => 'nta', 'Nitab4.5_0001453g0040' => 'nta', 'Nitab4.5_0002827g0090' => 'nta', 'Nitab4.5_0003082g0040' => 'nta', 'Nitab4.5_0007799g0040' => 'nta', 'Nitab4.5_0008983g0010' => 'nta', 'Nitab4.5_0009017g0020' => 'nta', 'Nn1g02132' => 'nnu', 'Nn1g03492' => 'nnu', 'Nn1g03493' => 'nnu', 'Nn1g03494' => 'nnu', 'Nn1g07164' => 'nnu', 'Nn1g07291' => 'nnu', 'Nn2g10655' => 'nnu', 'Nn2g11652' => 'nnu', 'Nn2g14008' => 'nnu', 'Nn3g17476' => 'nnu', 'Nn3g17477' => 'nnu', 'Nn4g22370' => 'nnu', 'Nn4g25255' => 'nnu', 'Nn5g27755' => 'nnu', 'Nn6g34260' => 'nnu', 'Nn6g35041' => 'nnu', 'Oeu005924.1' => 'oeu', 'Oeu008383.1' => 'oeu', 'Oeu014928.1' => 'oeu', 'Oeu019889.1' => 'oeu', 'Oeu022271.1' => 'oeu', 'Oeu025271.1' => 'oeu', 'Oeu036302.1' => 'oeu', 'Oeu044100.1' => 'oeu', 'Os01g0528300' => 'osa', 'Os03g0286200' => 'osa', 'Os04g0406600' => 'osa', 'Os07g0512000' => 'osa', 'Os07g0694600' => 'osa', 'Os08g0411000' => 'osa', 'Os09g0565700' => 'osa', 'Os09g0566050' => 'osa', 'Os10g0523700' => 'osa', 'Peaxi162Scf00002g00514' => 'pax', 'Peaxi162Scf00047g01817' => 'pax', 'Peaxi162Scf00114g00001' => 'pax', 'Peaxi162Scf00147g00613' => 'pax', 'Peaxi162Scf00389g00425' => 'pax', 'PGR042G1139' => 'pgr', 'PGR042G3273' => 'pgr', 'PGR102G2180' => 'pgr', 'PGR119G0234' => 'pgr', 'PGR119G0668' => 'pgr', 'PGSC0003DMG400007122' => 'stu', 'PGSC0003DMG400016478' => 'stu', 'PGSC0003DMG400025374' => 'stu', 'PGSC0003DMG400026536' => 'stu', 'Phvul.003G079600' => 'pvu', 'Phvul.005G115600' => 'pvu', 'Phvul.005G127100' => 'pvu', 'Phvul.006G149500' => 'pvu', 'Phvul.006G149600' => 'pvu', 'Phvul.011G071800' => 'pvu', 'Phvul.011G090400' => 'pvu', 'Potri.004G013400' => 'ptr', 'Potri.004G188100' => 'ptr', 'Potri.008G195500' => 'ptr', 'Potri.009G148800' => 'ptr', 'Potri.011G004700' => 'ptr', 'Pp3c17_22810' => 'ppa', 'Pp3c18_4480' => 'ppa', 'Pp3c19_13030' => 'ppa', 'Pp3c1_33620' => 'ppa', 'Pp3c2_9380' => 'ppa', 'PRCOL_00001023' => 'pco', 'Prupe.3G216300' => 'ppe', 'Prupe.4G019500' => 'ppe', 'Prupe.6G092500' => 'ppe', 'Prupe.6G119200' => 'ppe', 'Psat0s1945g0080' => 'psa', 'Psat0s4167g0040' => 'psa', 'Psat1g185800' => 'psa', 'Psat4g006440' => 'psa', 'Psat4g006480' => 'psa', 'Psat4g168120' => 'psa', 'Psat5g255680' => 'psa', 'Psat5g261760' => 'psa', 'Psat7g222120' => 'psa', 'PSO063G7252' => 'pso', 'PSO170G4778' => 'pso', 'PSO210G2249' => 'pso', 'PSO339G2411' => 'pso', 'PSO339G2457' => 'pso', 'PSO339G2854' => 'pso', 'PSO339G4288' => 'pso', 'PSO339G4615' => 'pso', 'PSO384G2796' => 'pso', 'PSO384G2940' => 'pso', 'PSO384G4227' => 'pso', 'PSO478G1425' => 'pso', 'PSO541G3863' => 'pso', 'PSO675G0507' => 'pso', 'PSO782G0338' => 'pso', 'PSO832G0644' => 'pso', 'QL01p013664' => 'qlo', 'QL01p036598' => 'qlo', 'QL05p072984' => 'qlo', 'QL08p005768' => 'qlo', 'QL08p032743' => 'qlo', 'QL93p0073_0439' => 'qlo', 'QL93p0073_0444' => 'qlo', 'RcHm_v2.0_Chr5g0002851' => 'rch', 'RcHm_v2.0_Chr5g0055201' => 'rch', 'RcHm_v2.0_Chr5g0061191' => 'rch', 'RcHm_v2.0_Chr7g0203231' => 'rch', 'Rhsim01G0208100' => 'rsi', 'Rhsim01G0208200' => 'rsi', 'Rhsim02G0106500' => 'rsi', 'Rhsim03G0107900' => 'rsi', 'Rhsim06G0163400' => 'rsi', 'Rhsim13G0105200' => 'rsi', 'Sabra04G0006300' => 'sbr', 'Sabra04G0127000' => 'sbr', 'Sabra08G0148700' => 'sbr', 'Sabra09G0117400' => 'sbr', 'SalBow1G3326' => 'sbo', 'SalBow3G3228' => 'sbo', 'SalBow6G1634' => 'sbo', 'SalBow6G3603' => 'sbo', 'SalBow6G5266' => 'sbo', 'SalBow7G2265' => 'sbo', 'SalBow8G0850' => 'sbo', 'SalBow8G2592' => 'sbo', 'Sc05g0009240' => 'sci', 'Sc12g0002300' => 'sci', 'Sc21g0000100' => 'sci', 'Sc21g0004720' => 'sci', 'Sed0002949' => 'sed', 'Sed0004114' => 'sed', 'Sed0004306' => 'sed', 'Sed0006172' => 'sed', 'Sed0008413' => 'sed', 'Sed0013809' => 'sed', 'Sed0019556' => 'sed', 'SEGI_03570' => 'sgi', 'SEGI_07859' => 'sgi', 'SEGI_15042' => 'sgi', 'SEGI_16263' => 'sgi', 'SEGI_16552' => 'sgi', 'SEGI_24331' => 'sgi', 'SEGI_27316' => 'sgi', 'SEGI_29521' => 'sgi', 'SEGI_41342' => 'sgi', 'SGA_v2.0_scaffold27G11617' => 'sas', 'SGA_v2.0_scaffold316G48428' => 'sas', 'SGA_v2.0_scaffold49G18261' => 'sas', 'SGA_v2.0_scaffold7G03831' => 'sas', 'SGA_v2.0_scaffold93G28359' => 'sas', 'SHI02210' => 'shi', 'SHI06028' => 'shi', 'SHI06321' => 'shi', 'SMO111G0012' => 'smo', 'SMO228G0080' => 'smo', 'SMO356G0756' => 'smo', 'Solyc02g080620.3' => 'sly', 'Solyc06g074530.1' => 'sly', 'Solyc11g066890.1' => 'sly', 'Solyc11g072520.3' => 'sly', 'Sopen02g025330' => 'spe', 'Sopen06g031000' => 'spe', 'Sopen09g008240' => 'spe', 'Sopen09g025210' => 'spe', 'Sopen11g026600' => 'spe', 'Sopen11g030170' => 'spe', 'Sp1g10420' => 'spa', 'Sp3g06570' => 'spa', 'Sp4g10660' => 'spa', 'Sp5g16460' => 'spa', 'Sp6g22710' => 'spa', 'TAR365G0112' => 'tar', 'TAR369G0717' => 'tar', 'TAR374G0976' => 'tar', 'TAR623G1128' => 'tar', 'TAR626G1937' => 'tar', 'TAR627G0123' => 'tar', 'TAR628G0305' => 'tar', 'TAR636G1176' => 'tar', 'TAR636G2442' => 'tar', 'THA.LOC104800556' => 'tha', 'THA.LOC104809501' => 'tha', 'THA.LOC104815126' => 'tha', 'THA.LOC104815732' => 'tha', 'THA.LOC104823528' => 'tha', 'Thecc.02G365600' => 'tca', 'Thecc.06G222300' => 'tca', 'Thecc.09G261800' => 'tca', 'Thecc.09G291400' => 'tca', 'Thhalv10003028m.g' => 'esa', 'Thhalv10007886m.g' => 'esa', 'Thhalv10016085m.g' => 'esa', 'Thhalv10016681m.g' => 'esa', 'Thhalv10020951m.g' => 'esa', 'TPR.G15598' => 'tpr', 'TPR.G29305' => 'tpr', 'TPR.G32395' => 'tpr', 'TPR.G36998' => 'tpr', 'TPR.G4227' => 'tpr', 'TWI18G1433' => 'twi', 'TWI31G0755' => 'twi', 'TWI38G0912' => 'twi', 'TWI75G1097' => 'twi', 'TWI75G1619' => 'twi', 'TWI79G1336' => 'twi', 'unitig_0.g943' => 'ugi', 'unitig_0.g944' => 'ugi', 'unitig_22.g6646' => 'ugi', 'unitig_37.g12681' => 'ugi', 'unitig_8.g3290' => 'ugi', 'vmacro03278' => 'vma', 'vmacro12197' => 'vma', 'vmacro14478' => 'vma', 'vmacro15787' => 'vma', 'vmacro15789' => 'vma', 'vmacro15790' => 'vma', 'vmacro15806' => 'vma', 'vmacro22907' => 'vma', 'vmacro22908' => 'vma', 'vmacro22909' => 'vma', 'vmacro23108' => 'vma', 'VMungo0540G0540' => 'vmu', 'VMungo0540G2468' => 'vmu', 'VMungo1080G0390' => 'vmu', 'VMungo1080G1165' => 'vmu', 'VMungo1127G0170' => 'vmu', 'VMungo1127G2099' => 'vmu', 'VMungo1215G3013' => 'vmu', 'Zm00001eb013110' => 'zma', 'Zm00001eb084260' => 'zma', 'Zm00001eb096110' => 'zma', 'Zm00001eb217510' => 'zma', 'Zm00001eb322550' => 'zma', 'Zm00001eb390770' => 'zma', 'Zm00001eb397170' => 'zma', 'Zm00001eb404610' => 'zma', 'Zm00001eb421790' => 'zma' ) $gf_id = 'HOM05D000911' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000911' ) $data_identifier = 'HOM05D000911' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 16, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 5, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 6, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 8, 'nnu' => (int) 16, 'oeu' => (int) 8, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 5, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 16, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421790' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000911', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27780' => 'bna', 'A03p35380' => 'bna', 'A04p21160' => 'bna', 'A05p40570' => 'bna', 'A06p26900' => 'bna', 'A08p33230' => 'bna', 'A09p65960' => 'bna', 'A10p18290' => 'bna', 'Aa31LG1G12990' => 'aar', 'Aa31LG1G2980' => 'aar', 'Aa31LG4G14320' => 'aar', 'Aa31LG7G11800' => 'aar', 'Aa31sc36G50' => 'aar', 'Aa31sc36G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3721' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5459' => 'aag', 'Actinidia03028' => 'ach', 'Actinidia03753' => 'ach', 'Actinidia04187' => 'ach', 'Actinidia05509' => 'ach', 'Actinidia24180' => 'ach', 'Actinidia26906' => 'ach', 'Actinidia37097' => 'ach', 'Actinidia38249' => 'ach', 'Ah.01g003470' => 'amhyb', 'Ah.01g004580' => 'amhyb', 'Ah.01g014850' => 'amhyb', 'Ah.01g016830' => 'amhyb', 'Ah.14g088000' => 'amhyb', 'AL1G22980' => 'aly', 'AL3G18990' => 'aly', 'AL4G22440' => 'aly', 'AL4G33180' => 'aly', 'AL5G22920' => 'aly', 'AL6G33660' => 'aly', 'AL8G20720' => 'aly', 'Aqoxy1G00935' => 'aox', 'Aqoxy1G02094' => 'aox', 'Aqoxy2G01239' => 'aox', 'Aqoxy4G01870' => 'aox', 'Aqoxy7G00450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.36ZVTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71EM27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5D6C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH3WRE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3NCM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RIM768' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YB5YRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z36GDV' => 'arhy', 'AT1G08250' => 'ath', 'AT1G11790' => 'ath', 'AT2G27820' => 'ath', 'AT3G07630' => 'ath', 'AT3G44720' => 'ath', 'AT5G22630' => 'ath', 'ATR0693G304' => 'atr', 'ATR0794G109' => 'atr', 'ATR0820G120' => 'atr', 'ATR1159G064' => 'atr', 'Atru.chr10.2239' => 'acertr', 'Atru.chr3.3371' => 'acertr', 'Atru.chr6.3202' => 'acertr', 'AUR62006499' => 'cqu', 'AUR62012718' => 'cqu', 'AUR62021938' => 'cqu', 'AUR62023932' => 'cqu', 'AUR62025034' => 'cqu', 'AUR62025035' => 'cqu', 'AUR62038307' => 'cqu', 'AUR62043466' => 'cqu', 'BcaB02g10748' => 'bca', 'BcaB03g13231' => 'bca', 'BcaB03g14689' => 'bca', 'BcaB05g22716' => 'bca', 'BcaB06g28172' => 'bca', 'BcaB08g36413' => 'bca', 'BcaC01g02186' => 'bca', 'BcaC01g04272' => 'bca', 'BcaC02g08080' => 'bca', 'BcaC02g08227' => 'bca', 'BcaC03g13901' => 'bca', 'BcaC04g19593' => 'bca', 'BcaC04g20874' => 'bca', 'BcaC05g29557' => 'bca', 'BcaC06g35505' => 'bca', 'BcaC07g41954' => 'bca', 'BcaC07g41955' => 'bca', 'BcaC07g41956' => 'bca', 'BcaC07g42519' => 'bca', 'BcaC07g42520' => 'bca', 'BcaC07g42523' => 'bca', 'BcaC07g42524' => 'bca', 'BcaC07g42525' => 'bca', 'BcaC08g47480' => 'bca', 'BcaC08g47481' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00530' => 'bna', 'BolC2t07178H' => 'bol', 'BolC3t16567H' => 'bol', 'BolC4t27234H' => 'bol', 'BolC5t29728H' => 'bol', 'BolC5t34622H' => 'bol', 'BolC6t40321H' => 'bol', 'BolC7t42028H' => 'bol', 'BolC8t49125H' => 'bol', 'BolC8t52538H' => 'bol', 'BolC8t52539H' => 'bol', 'BolC9t56681H' => 'bol', 'BolC9t58266H' => 'bol', 'BolSC21t60294H' => 'bol', 'BraA02t05670Z' => 'bra', 'BraA03t12716Z' => 'bra', 'BraA04t17685Z' => 'bra', 'BraA05t22788Z' => 'bra', 'BraA06t24032Z' => 'bra', 'BraA06t25625Z' => 'bra', 'BraA07t27930Z' => 'bra', 'BraA08t35242Z' => 'bra', 'BraA09t38609Z' => 'bra', 'BraA10t43905Z' => 'bra', 'C02p11060' => 'bna', 'C03p42990' => 'bna', 'C03p67310' => 'bna', 'C04p56990' => 'bna', 'C04p58660' => 'bna', 'C05p09890' => 'bna', 'C05p59680' => 'bna', 'C06p19830' => 'bna', 'C06p53040' => 'bna', 'C07p15230' => 'bna', 'C08p50070' => 'bna', 'C08p50090' => 'bna', 'C09p38330' => 'bna', 'C09p53940' => 'bna', 'CAN.G1014.1' => 'can', 'CAN.G644.30' => 'can', 'CAN.G84.47' => 'can', 'CAN.G919.8' => 'can', 'CANSAT54G0113' => 'cansat', 'CANSAT54G1286' => 'cansat', 'CANSAT64G1020' => 'cansat', 'CARHR008080' => 'chi', 'CARHR008090' => 'chi', 'CARHR012130' => 'chi', 'CARHR038390' => 'chi', 'CARHR082330' => 'chi', 'CARHR120520' => 'chi', 'CARHR151470' => 'chi', 'CARHR190950' => 'chi', 'Carub.0001s0760' => 'cru', 'Carub.0001s1146' => 'cru', 'Carub.0003s0721' => 'cru', 'Carub.0004s0858' => 'cru', 'Carub.0005s1040' => 'cru', 'Carub.0006s2035' => 'cru', 'Carub.0015s0005' => 'cru', 'Ca_01607_v3' => 'car', 'Ca_01677_v3' => 'car', 'Ca_06087_v3' => 'car', 'Ca_19238_v3' => 'car', 'Ca_19373_v3' => 'car', 'Ca_21079_v3' => 'car', 'CBR_g54016' => 'cbr', 'CBR_g54018' => 'cbr', 'CBR_g54020' => 'cbr', 'Cc01_g09780' => 'ccan', 'Cc01_g11680' => 'ccan', 'Cc02_g15610' => 'ccan', 'Cc05_g04350' => 'ccan', 'Cc09_g01580' => 'ccan', 'CDE01G0795' => 'cde', 'CDE02G2024' => 'cde', 'CDE02G2260' => 'cde', 'CDE02G4561' => 'cde', 'CDE05G2733' => 'cde', 'CDE05G3422' => 'cde', 'CDE06G2003' => 'cde', 'CDE08G0576' => 'cde', 'CDE09G0048' => 'cde', 'CDE11G0805' => 'cde', 'Cfa003644' => 'cfa', 'Cfa006290' => 'cfa', 'Cfa010080' => 'cfa', 'Cfa011376' => 'cfa', 'Cfa011576' => 'cfa', 'Cfa011577' => 'cfa', 'Cfa014389' => 'cfa', 'Ciclev10006044m.g' => 'ccl', 'Ciclev10006954m.g' => 'ccl', 'Ciclev10015131m.g' => 'ccl', 'Ciclev10015580m.g' => 'ccl', 'Ciclev10028359m.g' => 'ccl', 'Ciclev10028573m.g' => 'ccl', 'CiPaw.03G159300' => 'cil', 'CiPaw.04G115100' => 'cil', 'CiPaw.09G092800' => 'cil', 'CiPaw.10G071800' => 'cil', 'CiPaw.13G105800' => 'cil', 'CiPaw.13G141000' => 'cil', 'CiPaw.14G103400' => 'cil', 'ClCG01G012700' => 'cla', 'ClCG01G012720' => 'cla', 'ClCG01G021920' => 'cla', 'ClCG02G008870' => 'cla', 'ClCG02G020840' => 'cla', 'ClCG02G021930' => 'cla', 'COL.COLO4_19302' => 'col', 'COL.COLO4_25262' => 'col', 'COL.COLO4_31788' => 'col', 'Cpa.g.c34684' => 'cpa', 'Cpa.g.c36520.1' => 'cpa', 'Cpa.g.c45626' => 'cpa', 'Cpa.g.sc121.17' => 'cpa', 'Cpa.g.sc13.22' => 'cpa', 'Cpa.g.sc87.88' => 'cpa', 'Cre06.g261800' => 'cre', 'CsaV3_1G014500' => 'csa', 'CsaV3_1G014510' => 'csa', 'CsaV3_2G034880' => 'csa', 'CsaV3_6G014760' => 'csa', 'CsaV3_6G021500' => 'csa', 'CsaV3_6G048980' => 'csa', 'CSS0002511' => 'camsi', 'CSS0007556' => 'camsi', 'CSS0008532' => 'camsi', 'CSS0009709' => 'camsi', 'CSS0010486' => 'camsi', 'CSS0016768' => 'camsi', 'CSS0023512' => 'camsi', 'CSS0025341' => 'camsi', 'CSS0027999' => 'camsi', 'CSS0028944' => 'camsi', 'CSS0032292' => 'camsi', 'CSS0032464' => 'camsi', 'CSS0037153' => 'camsi', 'CSS0039256' => 'camsi', 'CSS0048392' => 'camsi', 'CSS0050458' => 'camsi', 'DCAR_004224' => 'dca', 'DCAR_006147' => 'dca', 'DCAR_006465' => 'dca', 'DCAR_008159' => 'dca', 'DCAR_012164' => 'dca', 'DCAR_019764' => 'dca', 'Dinv05418' => 'din', 'Dinv10839' => 'din', 'Dinv12521' => 'din', 'Dinv13900' => 'din', 'Dinv29426' => 'din', 'Duzib150G0263' => 'dzi', 'Duzib168G1178' => 'dzi', 'Duzib168G1924' => 'dzi', 'Duzib170G0299' => 'dzi', 'Duzib170G0813' => 'dzi', 'Duzib235G1128' => 'dzi', 'Duzib248G1060' => 'dzi', 'ECA232G1910' => 'eca', 'ECA233G4621' => 'eca', 'ECA238G1216' => 'eca', 'ECA238G1784' => 'eca', 'ECA248G1242' => 'eca', 'EL10Ac8g20071' => 'bvu', 'EL10Ac9g21086' => 'bvu', 'EL10Ac9g22407' => 'bvu', 'EL10Ac9g22412' => 'bvu', 'Eucgr.A01119' => 'egr', 'Eucgr.E04043' => 'egr', 'Eucgr.J00428' => 'egr', 'Eucgr.J00958' => 'egr', 'FAN11G3091' => 'fan', 'FAN11G3651' => 'fan', 'FAN16G2566' => 'fan', 'FAN21G3155' => 'fan', 'FAN21G3400' => 'fan', 'FAN21G3543' => 'fan', 'FAN25G0234' => 'fan', 'FAN25G1422' => 'fan', 'FAN25G3392' => 'fan', 'FvH4_3g01940' => 'fve', 'FvH4_3g29870' => 'fve', 'FvH4_3g33680' => 'fve', 'Glyma.09G004200' => 'gma', 'Glyma.11G151288' => 'gma', 'Glyma.11G189100' => 'gma', 'Glyma.12G072500' => 'gma', 'Glyma.12G085500' => 'gma', 'Glyma.12G181800' => 'gma', 'Glyma.12G193000' => 'gma', 'Glyma.13G309300' => 'gma', 'Glyma.13G319000' => 'gma', 'Glyma.17G012600' => 'gma', 'Gohir.A06G148600' => 'ghi', 'Gohir.A07G115800' => 'ghi', 'Gohir.A08G003600' => 'ghi', 'Gohir.A09G093300' => 'ghi', 'Gohir.A09G105400' => 'ghi', 'Gohir.A09G105500' => 'ghi', 'Gohir.D06G154600' => 'ghi', 'Gohir.D07G120200' => 'ghi', 'Gohir.D08G013900' => 'ghi', 'Gohir.D09G093100' => 'ghi', 'Gohir.D09G102200' => 'ghi', 'Gohir.D09G102300' => 'ghi', 'Gorai.001G129400' => 'gra', 'Gorai.004G008200' => 'gra', 'Gorai.006G109800' => 'gra', 'Gorai.006G119500' => 'gra', 'Gorai.006G121300' => 'gra', 'Gorai.010G180700' => 'gra', 'GSVIVG01012716001' => 'vvi', 'GSVIVG01025118001' => 'vvi', 'GSVIVG01030439001' => 'vvi', 'GSVIVG01031397001' => 'vvi', 'HanXRQChr01g0004201' => 'han', 'HanXRQChr02g0054941' => 'han', 'HanXRQChr05g0141811' => 'han', 'HanXRQChr07g0197751' => 'han', 'HanXRQChr11g0346691' => 'han', 'HanXRQChr13g0396971' => 'han', 'HanXRQChr14g0432951' => 'han', 'HanXRQChr14g0452001' => 'han', 'HanXRQChr15g0496681' => 'han', 'HanXRQChr17g0557491' => 'han', 'HanXRQChr17g0557501' => 'han', 'Haze_06809' => 'cav', 'Haze_12852' => 'cav', 'Haze_15850' => 'cav', 'Haze_23446' => 'cav', 'Haze_23942' => 'cav', 'Haze_23943' => 'cav', 'Hma1.2p1_0091F.1_g046450' => 'hma', 'Hma1.2p1_0128F.1_g059910' => 'hma', 'Hma1.2p1_0249F.1_g102260' => 'hma', 'Hma1.2p1_0453F.1_g156190' => 'hma', 'Hma1.2p1_0695F.1_g204380' => 'hma', 'Hma1.2p1_0749F.1_g212650' => 'hma', 'Hma1.2p1_2156F.1_g315420' => 'hma', 'Hma1.2p1_2686F.1_g326940' => 'hma', 'HPP92_006428' => 'vpl', 'HPP92_012069' => 'vpl', 'HPP92_014129' => 'vpl', 'HPP92_014133' => 'vpl', 'HPP92_017315' => 'vpl', 'HPP92_026445' => 'vpl', 'HPP92_026446' => 'vpl', 'Hund00774' => 'sun', 'Hund07682' => 'sun', 'Hund21413' => 'sun', 'Hund23462' => 'sun', 'Hund23463' => 'sun', 'Lalb_Chr03g0027911' => 'lal', 'Lalb_Chr13g0304271' => 'lal', 'Lalb_Chr19g0137471' => 'lal', 'Lalb_Chr22g0350651' => 'lal', 'Lalb_Chr24g0395151' => 'lal', 'Lj1A1231T40' => 'lonja', 'Lj1A221T48' => 'lonja', 'Lj1C924T12' => 'lonja', 'Lj2C993G6' => 'lonja', 'Lj3g0005790' => 'lja', 'Lj3g0015432' => 'lja', 'Lj3g0017722' => 'lja', 'Lj3g0018497' => 'lja', 'Lj4g0025071' => 'lja', 'Lsat_1_v5_gn_1_129680' => 'lsa', 'Lsat_1_v5_gn_2_25321' => 'lsa', 'Lsat_1_v5_gn_2_95461' => 'lsa', 'Lsat_1_v5_gn_4_159620' => 'lsa', 'Lsat_1_v5_gn_6_41301' => 'lsa', 'Lsat_1_v5_gn_6_74660' => 'lsa', 'Lsat_1_v5_gn_7_11520' => 'lsa', 'Lsat_1_v5_gn_9_67680' => 'lsa', 'Manes.04G008300' => 'mes', 'Manes.04G008400' => 'mes', 'Manes.04G026500' => 'mes', 'Manes.10G135300' => 'mes', 'Manes.11G157300' => 'mes', 'Manes.12G074000' => 'mes', 'Manes.16G006200' => 'mes', 'Manes.17G026400' => 'mes', 'Mapoly0024s0086' => 'mpo', 'Mapoly0024s0087' => 'mpo', 'Mapoly0071s0057' => 'mpo', 'Mapoly0204s0012' => 'mpo', 'MBI04_g37681_MAGBIO' => 'mbi', 'MBI05_g17779_MAGBIO' => 'mbi', 'MBI12_g31184_MAGBIO' => 'mbi', 'MBI17_g11083_MAGBIO' => 'mbi', 'MBI18_g03883_MAGBIO' => 'mbi', 'MBI18_g28940_MAGBIO' => 'mbi', 'MCO01G690' => 'mco', 'MD03G1109900' => 'mdo', 'MD03G1134800' => 'mdo', 'MD05G1348000' => 'mdo', 'MD10G1322400' => 'mdo', 'MD11G1123300' => 'mdo', 'MD11G1157600' => 'mdo', 'Medtr2g084875' => 'mtr', 'Medtr2g088130' => 'mtr', 'Medtr4g055310' => 'mtr', 'Medtr4g061070' => 'mtr', 'Medtr4g132250' => 'mtr', 'MELO3C004795.2' => 'cme', 'MELO3C004797.2' => 'cme', 'MELO3C007396.2' => 'cme', 'MELO3C019277.2' => 'cme', 'MELO3C021449.2' => 'cme', 'MELO3C025736.2' => 'cme', 'Migut.D02175' => 'egut', 'Migut.H01573' => 'egut', 'Migut.M01327' => 'egut', 'Migut.N02513' => 'egut', 'MSTRG.14638' => 'ama', 'MSTRG.18632' => 'ama', 'MSTRG.7203' => 'ama', 'Nitab4.5_0000533g0140' => 'nta', 'Nitab4.5_0000888g0150' => 'nta', 'Nitab4.5_0001453g0040' => 'nta', 'Nitab4.5_0002827g0090' => 'nta', 'Nitab4.5_0003082g0040' => 'nta', 'Nitab4.5_0007799g0040' => 'nta', 'Nitab4.5_0008983g0010' => 'nta', 'Nitab4.5_0009017g0020' => 'nta', 'Nn1g02132' => 'nnu', 'Nn1g03492' => 'nnu', 'Nn1g03493' => 'nnu', 'Nn1g03494' => 'nnu', 'Nn1g07164' => 'nnu', 'Nn1g07291' => 'nnu', 'Nn2g10655' => 'nnu', 'Nn2g11652' => 'nnu', 'Nn2g14008' => 'nnu', 'Nn3g17476' => 'nnu', 'Nn3g17477' => 'nnu', 'Nn4g22370' => 'nnu', 'Nn4g25255' => 'nnu', 'Nn5g27755' => 'nnu', 'Nn6g34260' => 'nnu', 'Nn6g35041' => 'nnu', 'Oeu005924.1' => 'oeu', 'Oeu008383.1' => 'oeu', 'Oeu014928.1' => 'oeu', 'Oeu019889.1' => 'oeu', 'Oeu022271.1' => 'oeu', 'Oeu025271.1' => 'oeu', 'Oeu036302.1' => 'oeu', 'Oeu044100.1' => 'oeu', 'Os01g0528300' => 'osa', 'Os03g0286200' => 'osa', 'Os04g0406600' => 'osa', 'Os07g0512000' => 'osa', 'Os07g0694600' => 'osa', 'Os08g0411000' => 'osa', 'Os09g0565700' => 'osa', 'Os09g0566050' => 'osa', 'Os10g0523700' => 'osa', 'Peaxi162Scf00002g00514' => 'pax', 'Peaxi162Scf00047g01817' => 'pax', 'Peaxi162Scf00114g00001' => 'pax', 'Peaxi162Scf00147g00613' => 'pax', 'Peaxi162Scf00389g00425' => 'pax', 'PGR042G1139' => 'pgr', 'PGR042G3273' => 'pgr', 'PGR102G2180' => 'pgr', 'PGR119G0234' => 'pgr', 'PGR119G0668' => 'pgr', 'PGSC0003DMG400007122' => 'stu', 'PGSC0003DMG400016478' => 'stu', 'PGSC0003DMG400025374' => 'stu', 'PGSC0003DMG400026536' => 'stu', 'Phvul.003G079600' => 'pvu', 'Phvul.005G115600' => 'pvu', 'Phvul.005G127100' => 'pvu', 'Phvul.006G149500' => 'pvu', 'Phvul.006G149600' => 'pvu', 'Phvul.011G071800' => 'pvu', 'Phvul.011G090400' => 'pvu', 'Potri.004G013400' => 'ptr', 'Potri.004G188100' => 'ptr', 'Potri.008G195500' => 'ptr', 'Potri.009G148800' => 'ptr', 'Potri.011G004700' => 'ptr', 'Pp3c17_22810' => 'ppa', 'Pp3c18_4480' => 'ppa', 'Pp3c19_13030' => 'ppa', 'Pp3c1_33620' => 'ppa', 'Pp3c2_9380' => 'ppa', 'PRCOL_00001023' => 'pco', 'Prupe.3G216300' => 'ppe', 'Prupe.4G019500' => 'ppe', 'Prupe.6G092500' => 'ppe', 'Prupe.6G119200' => 'ppe', 'Psat0s1945g0080' => 'psa', 'Psat0s4167g0040' => 'psa', 'Psat1g185800' => 'psa', 'Psat4g006440' => 'psa', 'Psat4g006480' => 'psa', 'Psat4g168120' => 'psa', 'Psat5g255680' => 'psa', 'Psat5g261760' => 'psa', 'Psat7g222120' => 'psa', 'PSO063G7252' => 'pso', 'PSO170G4778' => 'pso', 'PSO210G2249' => 'pso', 'PSO339G2411' => 'pso', 'PSO339G2457' => 'pso', 'PSO339G2854' => 'pso', 'PSO339G4288' => 'pso', 'PSO339G4615' => 'pso', 'PSO384G2796' => 'pso', 'PSO384G2940' => 'pso', 'PSO384G4227' => 'pso', 'PSO478G1425' => 'pso', 'PSO541G3863' => 'pso', 'PSO675G0507' => 'pso', 'PSO782G0338' => 'pso', 'PSO832G0644' => 'pso', 'QL01p013664' => 'qlo', 'QL01p036598' => 'qlo', 'QL05p072984' => 'qlo', 'QL08p005768' => 'qlo', 'QL08p032743' => 'qlo', 'QL93p0073_0439' => 'qlo', 'QL93p0073_0444' => 'qlo', 'RcHm_v2.0_Chr5g0002851' => 'rch', 'RcHm_v2.0_Chr5g0055201' => 'rch', 'RcHm_v2.0_Chr5g0061191' => 'rch', 'RcHm_v2.0_Chr7g0203231' => 'rch', 'Rhsim01G0208100' => 'rsi', 'Rhsim01G0208200' => 'rsi', 'Rhsim02G0106500' => 'rsi', 'Rhsim03G0107900' => 'rsi', 'Rhsim06G0163400' => 'rsi', 'Rhsim13G0105200' => 'rsi', 'Sabra04G0006300' => 'sbr', 'Sabra04G0127000' => 'sbr', 'Sabra08G0148700' => 'sbr', 'Sabra09G0117400' => 'sbr', 'SalBow1G3326' => 'sbo', 'SalBow3G3228' => 'sbo', 'SalBow6G1634' => 'sbo', 'SalBow6G3603' => 'sbo', 'SalBow6G5266' => 'sbo', 'SalBow7G2265' => 'sbo', 'SalBow8G0850' => 'sbo', 'SalBow8G2592' => 'sbo', 'Sc05g0009240' => 'sci', 'Sc12g0002300' => 'sci', 'Sc21g0000100' => 'sci', 'Sc21g0004720' => 'sci', 'Sed0002949' => 'sed', 'Sed0004114' => 'sed', 'Sed0004306' => 'sed', 'Sed0006172' => 'sed', 'Sed0008413' => 'sed', 'Sed0013809' => 'sed', 'Sed0019556' => 'sed', 'SEGI_03570' => 'sgi', 'SEGI_07859' => 'sgi', 'SEGI_15042' => 'sgi', 'SEGI_16263' => 'sgi', 'SEGI_16552' => 'sgi', 'SEGI_24331' => 'sgi', 'SEGI_27316' => 'sgi', 'SEGI_29521' => 'sgi', 'SEGI_41342' => 'sgi', 'SGA_v2.0_scaffold27G11617' => 'sas', 'SGA_v2.0_scaffold316G48428' => 'sas', 'SGA_v2.0_scaffold49G18261' => 'sas', 'SGA_v2.0_scaffold7G03831' => 'sas', 'SGA_v2.0_scaffold93G28359' => 'sas', 'SHI02210' => 'shi', 'SHI06028' => 'shi', 'SHI06321' => 'shi', 'SMO111G0012' => 'smo', 'SMO228G0080' => 'smo', 'SMO356G0756' => 'smo', 'Solyc02g080620.3' => 'sly', 'Solyc06g074530.1' => 'sly', 'Solyc11g066890.1' => 'sly', 'Solyc11g072520.3' => 'sly', 'Sopen02g025330' => 'spe', 'Sopen06g031000' => 'spe', 'Sopen09g008240' => 'spe', 'Sopen09g025210' => 'spe', 'Sopen11g026600' => 'spe', 'Sopen11g030170' => 'spe', 'Sp1g10420' => 'spa', 'Sp3g06570' => 'spa', 'Sp4g10660' => 'spa', 'Sp5g16460' => 'spa', 'Sp6g22710' => 'spa', 'TAR365G0112' => 'tar', 'TAR369G0717' => 'tar', 'TAR374G0976' => 'tar', 'TAR623G1128' => 'tar', 'TAR626G1937' => 'tar', 'TAR627G0123' => 'tar', 'TAR628G0305' => 'tar', 'TAR636G1176' => 'tar', 'TAR636G2442' => 'tar', 'THA.LOC104800556' => 'tha', 'THA.LOC104809501' => 'tha', 'THA.LOC104815126' => 'tha', 'THA.LOC104815732' => 'tha', 'THA.LOC104823528' => 'tha', 'Thecc.02G365600' => 'tca', 'Thecc.06G222300' => 'tca', 'Thecc.09G261800' => 'tca', 'Thecc.09G291400' => 'tca', 'Thhalv10003028m.g' => 'esa', 'Thhalv10007886m.g' => 'esa', 'Thhalv10016085m.g' => 'esa', 'Thhalv10016681m.g' => 'esa', 'Thhalv10020951m.g' => 'esa', 'TPR.G15598' => 'tpr', 'TPR.G29305' => 'tpr', 'TPR.G32395' => 'tpr', 'TPR.G36998' => 'tpr', 'TPR.G4227' => 'tpr', 'TWI18G1433' => 'twi', 'TWI31G0755' => 'twi', 'TWI38G0912' => 'twi', 'TWI75G1097' => 'twi', 'TWI75G1619' => 'twi', 'TWI79G1336' => 'twi', 'unitig_0.g943' => 'ugi', 'unitig_0.g944' => 'ugi', 'unitig_22.g6646' => 'ugi', 'unitig_37.g12681' => 'ugi', 'unitig_8.g3290' => 'ugi', 'vmacro03278' => 'vma', 'vmacro12197' => 'vma', 'vmacro14478' => 'vma', 'vmacro15787' => 'vma', 'vmacro15789' => 'vma', 'vmacro15790' => 'vma', 'vmacro15806' => 'vma', 'vmacro22907' => 'vma', 'vmacro22908' => 'vma', 'vmacro22909' => 'vma', 'vmacro23108' => 'vma', 'VMungo0540G0540' => 'vmu', 'VMungo0540G2468' => 'vmu', 'VMungo1080G0390' => 'vmu', 'VMungo1080G1165' => 'vmu', 'VMungo1127G0170' => 'vmu', 'VMungo1127G2099' => 'vmu', 'VMungo1215G3013' => 'vmu', 'Zm00001eb013110' => 'zma', 'Zm00001eb084260' => 'zma', 'Zm00001eb096110' => 'zma', 'Zm00001eb217510' => 'zma', 'Zm00001eb322550' => 'zma', 'Zm00001eb390770' => 'zma', 'Zm00001eb397170' => 'zma', 'Zm00001eb404610' => 'zma', 'Zm00001eb421790' => 'zma' ), 'gf_id' => 'HOM05D000911', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000911' ), 'data_identifier' => 'HOM05D000911', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000911', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27780' => 'bna', 'A03p35380' => 'bna', 'A04p21160' => 'bna', 'A05p40570' => 'bna', 'A06p26900' => 'bna', 'A08p33230' => 'bna', 'A09p65960' => 'bna', 'A10p18290' => 'bna', 'Aa31LG1G12990' => 'aar', 'Aa31LG1G2980' => 'aar', 'Aa31LG4G14320' => 'aar', 'Aa31LG7G11800' => 'aar', 'Aa31sc36G50' => 'aar', 'Aa31sc36G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3721' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5459' => 'aag', 'Actinidia03028' => 'ach', 'Actinidia03753' => 'ach', 'Actinidia04187' => 'ach', 'Actinidia05509' => 'ach', 'Actinidia24180' => 'ach', 'Actinidia26906' => 'ach', 'Actinidia37097' => 'ach', 'Actinidia38249' => 'ach', 'Ah.01g003470' => 'amhyb', 'Ah.01g004580' => 'amhyb', 'Ah.01g014850' => 'amhyb', 'Ah.01g016830' => 'amhyb', 'Ah.14g088000' => 'amhyb', 'AL1G22980' => 'aly', 'AL3G18990' => 'aly', 'AL4G22440' => 'aly', 'AL4G33180' => 'aly', 'AL5G22920' => 'aly', 'AL6G33660' => 'aly', 'AL8G20720' => 'aly', 'Aqoxy1G00935' => 'aox', 'Aqoxy1G02094' => 'aox', 'Aqoxy2G01239' => 'aox', 'Aqoxy4G01870' => 'aox', 'Aqoxy7G00450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.36ZVTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71EM27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5D6C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH3WRE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3NCM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RIM768' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YB5YRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z36GDV' => 'arhy', 'AT1G08250' => 'ath', 'AT1G11790' => 'ath', 'AT2G27820' => 'ath', 'AT3G07630' => 'ath', 'AT3G44720' => 'ath', 'AT5G22630' => 'ath', 'ATR0693G304' => 'atr', 'ATR0794G109' => 'atr', 'ATR0820G120' => 'atr', 'ATR1159G064' => 'atr', 'Atru.chr10.2239' => 'acertr', 'Atru.chr3.3371' => 'acertr', 'Atru.chr6.3202' => 'acertr', 'AUR62006499' => 'cqu', 'AUR62012718' => 'cqu', 'AUR62021938' => 'cqu', 'AUR62023932' => 'cqu', 'AUR62025034' => 'cqu', 'AUR62025035' => 'cqu', 'AUR62038307' => 'cqu', 'AUR62043466' => 'cqu', 'BcaB02g10748' => 'bca', 'BcaB03g13231' => 'bca', 'BcaB03g14689' => 'bca', 'BcaB05g22716' => 'bca', 'BcaB06g28172' => 'bca', 'BcaB08g36413' => 'bca', 'BcaC01g02186' => 'bca', 'BcaC01g04272' => 'bca', 'BcaC02g08080' => 'bca', 'BcaC02g08227' => 'bca', 'BcaC03g13901' => 'bca', 'BcaC04g19593' => 'bca', 'BcaC04g20874' => 'bca', 'BcaC05g29557' => 'bca', 'BcaC06g35505' => 'bca', 'BcaC07g41954' => 'bca', 'BcaC07g41955' => 'bca', 'BcaC07g41956' => 'bca', 'BcaC07g42519' => 'bca', 'BcaC07g42520' => 'bca', 'BcaC07g42523' => 'bca', 'BcaC07g42524' => 'bca', 'BcaC07g42525' => 'bca', 'BcaC08g47480' => 'bca', 'BcaC08g47481' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00530' => 'bna', 'BolC2t07178H' => 'bol', 'BolC3t16567H' => 'bol', 'BolC4t27234H' => 'bol', 'BolC5t29728H' => 'bol', 'BolC5t34622H' => 'bol', 'BolC6t40321H' => 'bol', 'BolC7t42028H' => 'bol', 'BolC8t49125H' => 'bol', 'BolC8t52538H' => 'bol', 'BolC8t52539H' => 'bol', 'BolC9t56681H' => 'bol', 'BolC9t58266H' => 'bol', 'BolSC21t60294H' => 'bol', 'BraA02t05670Z' => 'bra', 'BraA03t12716Z' => 'bra', 'BraA04t17685Z' => 'bra', 'BraA05t22788Z' => 'bra', 'BraA06t24032Z' => 'bra', 'BraA06t25625Z' => 'bra', 'BraA07t27930Z' => 'bra', 'BraA08t35242Z' => 'bra', 'BraA09t38609Z' => 'bra', 'BraA10t43905Z' => 'bra', 'C02p11060' => 'bna', 'C03p42990' => 'bna', 'C03p67310' => 'bna', 'C04p56990' => 'bna', 'C04p58660' => 'bna', 'C05p09890' => 'bna', 'C05p59680' => 'bna', 'C06p19830' => 'bna', 'C06p53040' => 'bna', 'C07p15230' => 'bna', 'C08p50070' => 'bna', 'C08p50090' => 'bna', 'C09p38330' => 'bna', 'C09p53940' => 'bna', 'CAN.G1014.1' => 'can', 'CAN.G644.30' => 'can', 'CAN.G84.47' => 'can', 'CAN.G919.8' => 'can', 'CANSAT54G0113' => 'cansat', 'CANSAT54G1286' => 'cansat', 'CANSAT64G1020' => 'cansat', 'CARHR008080' => 'chi', 'CARHR008090' => 'chi', 'CARHR012130' => 'chi', 'CARHR038390' => 'chi', 'CARHR082330' => 'chi', 'CARHR120520' => 'chi', 'CARHR151470' => 'chi', 'CARHR190950' => 'chi', 'Carub.0001s0760' => 'cru', 'Carub.0001s1146' => 'cru', 'Carub.0003s0721' => 'cru', 'Carub.0004s0858' => 'cru', 'Carub.0005s1040' => 'cru', 'Carub.0006s2035' => 'cru', 'Carub.0015s0005' => 'cru', 'Ca_01607_v3' => 'car', 'Ca_01677_v3' => 'car', 'Ca_06087_v3' => 'car', 'Ca_19238_v3' => 'car', 'Ca_19373_v3' => 'car', 'Ca_21079_v3' => 'car', 'CBR_g54016' => 'cbr', 'CBR_g54018' => 'cbr', 'CBR_g54020' => 'cbr', 'Cc01_g09780' => 'ccan', 'Cc01_g11680' => 'ccan', 'Cc02_g15610' => 'ccan', 'Cc05_g04350' => 'ccan', 'Cc09_g01580' => 'ccan', 'CDE01G0795' => 'cde', 'CDE02G2024' => 'cde', 'CDE02G2260' => 'cde', 'CDE02G4561' => 'cde', 'CDE05G2733' => 'cde', 'CDE05G3422' => 'cde', 'CDE06G2003' => 'cde', 'CDE08G0576' => 'cde', 'CDE09G0048' => 'cde', 'CDE11G0805' => 'cde', 'Cfa003644' => 'cfa', 'Cfa006290' => 'cfa', 'Cfa010080' => 'cfa', 'Cfa011376' => 'cfa', 'Cfa011576' => 'cfa', 'Cfa011577' => 'cfa', 'Cfa014389' => 'cfa', 'Ciclev10006044m.g' => 'ccl', 'Ciclev10006954m.g' => 'ccl', 'Ciclev10015131m.g' => 'ccl', 'Ciclev10015580m.g' => 'ccl', 'Ciclev10028359m.g' => 'ccl', 'Ciclev10028573m.g' => 'ccl', 'CiPaw.03G159300' => 'cil', 'CiPaw.04G115100' => 'cil', 'CiPaw.09G092800' => 'cil', 'CiPaw.10G071800' => 'cil', 'CiPaw.13G105800' => 'cil', 'CiPaw.13G141000' => 'cil', 'CiPaw.14G103400' => 'cil', 'ClCG01G012700' => 'cla', 'ClCG01G012720' => 'cla', 'ClCG01G021920' => 'cla', 'ClCG02G008870' => 'cla', 'ClCG02G020840' => 'cla', 'ClCG02G021930' => 'cla', 'COL.COLO4_19302' => 'col', 'COL.COLO4_25262' => 'col', 'COL.COLO4_31788' => 'col', 'Cpa.g.c34684' => 'cpa', 'Cpa.g.c36520.1' => 'cpa', 'Cpa.g.c45626' => 'cpa', 'Cpa.g.sc121.17' => 'cpa', 'Cpa.g.sc13.22' => 'cpa', 'Cpa.g.sc87.88' => 'cpa', 'Cre06.g261800' => 'cre', 'CsaV3_1G014500' => 'csa', 'CsaV3_1G014510' => 'csa', 'CsaV3_2G034880' => 'csa', 'CsaV3_6G014760' => 'csa', 'CsaV3_6G021500' => 'csa', 'CsaV3_6G048980' => 'csa', 'CSS0002511' => 'camsi', 'CSS0007556' => 'camsi', 'CSS0008532' => 'camsi', 'CSS0009709' => 'camsi', 'CSS0010486' => 'camsi', 'CSS0016768' => 'camsi', 'CSS0023512' => 'camsi', 'CSS0025341' => 'camsi', 'CSS0027999' => 'camsi', 'CSS0028944' => 'camsi', 'CSS0032292' => 'camsi', 'CSS0032464' => 'camsi', 'CSS0037153' => 'camsi', 'CSS0039256' => 'camsi', 'CSS0048392' => 'camsi', 'CSS0050458' => 'camsi', 'DCAR_004224' => 'dca', 'DCAR_006147' => 'dca', 'DCAR_006465' => 'dca', 'DCAR_008159' => 'dca', 'DCAR_012164' => 'dca', 'DCAR_019764' => 'dca', 'Dinv05418' => 'din', 'Dinv10839' => 'din', 'Dinv12521' => 'din', 'Dinv13900' => 'din', 'Dinv29426' => 'din', 'Duzib150G0263' => 'dzi', 'Duzib168G1178' => 'dzi', 'Duzib168G1924' => 'dzi', 'Duzib170G0299' => 'dzi', 'Duzib170G0813' => 'dzi', 'Duzib235G1128' => 'dzi', 'Duzib248G1060' => 'dzi', 'ECA232G1910' => 'eca', 'ECA233G4621' => 'eca', 'ECA238G1216' => 'eca', 'ECA238G1784' => 'eca', 'ECA248G1242' => 'eca', 'EL10Ac8g20071' => 'bvu', 'EL10Ac9g21086' => 'bvu', 'EL10Ac9g22407' => 'bvu', 'EL10Ac9g22412' => 'bvu', 'Eucgr.A01119' => 'egr', 'Eucgr.E04043' => 'egr', 'Eucgr.J00428' => 'egr', 'Eucgr.J00958' => 'egr', 'FAN11G3091' => 'fan', 'FAN11G3651' => 'fan', 'FAN16G2566' => 'fan', 'FAN21G3155' => 'fan', 'FAN21G3400' => 'fan', 'FAN21G3543' => 'fan', 'FAN25G0234' => 'fan', 'FAN25G1422' => 'fan', 'FAN25G3392' => 'fan', 'FvH4_3g01940' => 'fve', 'FvH4_3g29870' => 'fve', 'FvH4_3g33680' => 'fve', 'Glyma.09G004200' => 'gma', 'Glyma.11G151288' => 'gma', 'Glyma.11G189100' => 'gma', 'Glyma.12G072500' => 'gma', 'Glyma.12G085500' => 'gma', 'Glyma.12G181800' => 'gma', 'Glyma.12G193000' => 'gma', 'Glyma.13G309300' => 'gma', 'Glyma.13G319000' => 'gma', 'Glyma.17G012600' => 'gma', 'Gohir.A06G148600' => 'ghi', 'Gohir.A07G115800' => 'ghi', 'Gohir.A08G003600' => 'ghi', 'Gohir.A09G093300' => 'ghi', 'Gohir.A09G105400' => 'ghi', 'Gohir.A09G105500' => 'ghi', 'Gohir.D06G154600' => 'ghi', 'Gohir.D07G120200' => 'ghi', 'Gohir.D08G013900' => 'ghi', 'Gohir.D09G093100' => 'ghi', 'Gohir.D09G102200' => 'ghi', 'Gohir.D09G102300' => 'ghi', 'Gorai.001G129400' => 'gra', 'Gorai.004G008200' => 'gra', 'Gorai.006G109800' => 'gra', 'Gorai.006G119500' => 'gra', 'Gorai.006G121300' => 'gra', 'Gorai.010G180700' => 'gra', 'GSVIVG01012716001' => 'vvi', 'GSVIVG01025118001' => 'vvi', 'GSVIVG01030439001' => 'vvi', 'GSVIVG01031397001' => 'vvi', 'HanXRQChr01g0004201' => 'han', 'HanXRQChr02g0054941' => 'han', 'HanXRQChr05g0141811' => 'han', 'HanXRQChr07g0197751' => 'han', 'HanXRQChr11g0346691' => 'han', 'HanXRQChr13g0396971' => 'han', 'HanXRQChr14g0432951' => 'han', 'HanXRQChr14g0452001' => 'han', 'HanXRQChr15g0496681' => 'han', 'HanXRQChr17g0557491' => 'han', 'HanXRQChr17g0557501' => 'han', 'Haze_06809' => 'cav', 'Haze_12852' => 'cav', 'Haze_15850' => 'cav', 'Haze_23446' => 'cav', 'Haze_23942' => 'cav', 'Haze_23943' => 'cav', 'Hma1.2p1_0091F.1_g046450' => 'hma', 'Hma1.2p1_0128F.1_g059910' => 'hma', 'Hma1.2p1_0249F.1_g102260' => 'hma', 'Hma1.2p1_0453F.1_g156190' => 'hma', 'Hma1.2p1_0695F.1_g204380' => 'hma', 'Hma1.2p1_0749F.1_g212650' => 'hma', 'Hma1.2p1_2156F.1_g315420' => 'hma', 'Hma1.2p1_2686F.1_g326940' => 'hma', 'HPP92_006428' => 'vpl', 'HPP92_012069' => 'vpl', 'HPP92_014129' => 'vpl', 'HPP92_014133' => 'vpl', 'HPP92_017315' => 'vpl', 'HPP92_026445' => 'vpl', 'HPP92_026446' => 'vpl', 'Hund00774' => 'sun', 'Hund07682' => 'sun', 'Hund21413' => 'sun', 'Hund23462' => 'sun', 'Hund23463' => 'sun', 'Lalb_Chr03g0027911' => 'lal', 'Lalb_Chr13g0304271' => 'lal', 'Lalb_Chr19g0137471' => 'lal', 'Lalb_Chr22g0350651' => 'lal', 'Lalb_Chr24g0395151' => 'lal', 'Lj1A1231T40' => 'lonja', 'Lj1A221T48' => 'lonja', 'Lj1C924T12' => 'lonja', 'Lj2C993G6' => 'lonja', 'Lj3g0005790' => 'lja', 'Lj3g0015432' => 'lja', 'Lj3g0017722' => 'lja', 'Lj3g0018497' => 'lja', 'Lj4g0025071' => 'lja', 'Lsat_1_v5_gn_1_129680' => 'lsa', 'Lsat_1_v5_gn_2_25321' => 'lsa', 'Lsat_1_v5_gn_2_95461' => 'lsa', 'Lsat_1_v5_gn_4_159620' => 'lsa', 'Lsat_1_v5_gn_6_41301' => 'lsa', 'Lsat_1_v5_gn_6_74660' => 'lsa', 'Lsat_1_v5_gn_7_11520' => 'lsa', 'Lsat_1_v5_gn_9_67680' => 'lsa', 'Manes.04G008300' => 'mes', 'Manes.04G008400' => 'mes', 'Manes.04G026500' => 'mes', 'Manes.10G135300' => 'mes', 'Manes.11G157300' => 'mes', 'Manes.12G074000' => 'mes', 'Manes.16G006200' => 'mes', 'Manes.17G026400' => 'mes', 'Mapoly0024s0086' => 'mpo', 'Mapoly0024s0087' => 'mpo', 'Mapoly0071s0057' => 'mpo', 'Mapoly0204s0012' => 'mpo', 'MBI04_g37681_MAGBIO' => 'mbi', 'MBI05_g17779_MAGBIO' => 'mbi', 'MBI12_g31184_MAGBIO' => 'mbi', 'MBI17_g11083_MAGBIO' => 'mbi', 'MBI18_g03883_MAGBIO' => 'mbi', 'MBI18_g28940_MAGBIO' => 'mbi', 'MCO01G690' => 'mco', 'MD03G1109900' => 'mdo', 'MD03G1134800' => 'mdo', 'MD05G1348000' => 'mdo', 'MD10G1322400' => 'mdo', 'MD11G1123300' => 'mdo', 'MD11G1157600' => 'mdo', 'Medtr2g084875' => 'mtr', 'Medtr2g088130' => 'mtr', 'Medtr4g055310' => 'mtr', 'Medtr4g061070' => 'mtr', 'Medtr4g132250' => 'mtr', 'MELO3C004795.2' => 'cme', 'MELO3C004797.2' => 'cme', 'MELO3C007396.2' => 'cme', 'MELO3C019277.2' => 'cme', 'MELO3C021449.2' => 'cme', 'MELO3C025736.2' => 'cme', 'Migut.D02175' => 'egut', 'Migut.H01573' => 'egut', 'Migut.M01327' => 'egut', 'Migut.N02513' => 'egut', 'MSTRG.14638' => 'ama', 'MSTRG.18632' => 'ama', 'MSTRG.7203' => 'ama', 'Nitab4.5_0000533g0140' => 'nta', 'Nitab4.5_0000888g0150' => 'nta', 'Nitab4.5_0001453g0040' => 'nta', 'Nitab4.5_0002827g0090' => 'nta', 'Nitab4.5_0003082g0040' => 'nta', 'Nitab4.5_0007799g0040' => 'nta', 'Nitab4.5_0008983g0010' => 'nta', 'Nitab4.5_0009017g0020' => 'nta', 'Nn1g02132' => 'nnu', 'Nn1g03492' => 'nnu', 'Nn1g03493' => 'nnu', 'Nn1g03494' => 'nnu', 'Nn1g07164' => 'nnu', 'Nn1g07291' => 'nnu', 'Nn2g10655' => 'nnu', 'Nn2g11652' => 'nnu', 'Nn2g14008' => 'nnu', 'Nn3g17476' => 'nnu', 'Nn3g17477' => 'nnu', 'Nn4g22370' => 'nnu', 'Nn4g25255' => 'nnu', 'Nn5g27755' => 'nnu', 'Nn6g34260' => 'nnu', 'Nn6g35041' => 'nnu', 'Oeu005924.1' => 'oeu', 'Oeu008383.1' => 'oeu', 'Oeu014928.1' => 'oeu', 'Oeu019889.1' => 'oeu', 'Oeu022271.1' => 'oeu', 'Oeu025271.1' => 'oeu', 'Oeu036302.1' => 'oeu', 'Oeu044100.1' => 'oeu', 'Os01g0528300' => 'osa', 'Os03g0286200' => 'osa', 'Os04g0406600' => 'osa', 'Os07g0512000' => 'osa', 'Os07g0694600' => 'osa', 'Os08g0411000' => 'osa', 'Os09g0565700' => 'osa', 'Os09g0566050' => 'osa', 'Os10g0523700' => 'osa', 'Peaxi162Scf00002g00514' => 'pax', 'Peaxi162Scf00047g01817' => 'pax', 'Peaxi162Scf00114g00001' => 'pax', 'Peaxi162Scf00147g00613' => 'pax', 'Peaxi162Scf00389g00425' => 'pax', 'PGR042G1139' => 'pgr', 'PGR042G3273' => 'pgr', 'PGR102G2180' => 'pgr', 'PGR119G0234' => 'pgr', 'PGR119G0668' => 'pgr', 'PGSC0003DMG400007122' => 'stu', 'PGSC0003DMG400016478' => 'stu', 'PGSC0003DMG400025374' => 'stu', 'PGSC0003DMG400026536' => 'stu', 'Phvul.003G079600' => 'pvu', 'Phvul.005G115600' => 'pvu', 'Phvul.005G127100' => 'pvu', 'Phvul.006G149500' => 'pvu', 'Phvul.006G149600' => 'pvu', 'Phvul.011G071800' => 'pvu', 'Phvul.011G090400' => 'pvu', 'Potri.004G013400' => 'ptr', 'Potri.004G188100' => 'ptr', 'Potri.008G195500' => 'ptr', 'Potri.009G148800' => 'ptr', 'Potri.011G004700' => 'ptr', 'Pp3c17_22810' => 'ppa', 'Pp3c18_4480' => 'ppa', 'Pp3c19_13030' => 'ppa', 'Pp3c1_33620' => 'ppa', 'Pp3c2_9380' => 'ppa', 'PRCOL_00001023' => 'pco', 'Prupe.3G216300' => 'ppe', 'Prupe.4G019500' => 'ppe', 'Prupe.6G092500' => 'ppe', 'Prupe.6G119200' => 'ppe', 'Psat0s1945g0080' => 'psa', 'Psat0s4167g0040' => 'psa', 'Psat1g185800' => 'psa', 'Psat4g006440' => 'psa', 'Psat4g006480' => 'psa', 'Psat4g168120' => 'psa', 'Psat5g255680' => 'psa', 'Psat5g261760' => 'psa', 'Psat7g222120' => 'psa', 'PSO063G7252' => 'pso', 'PSO170G4778' => 'pso', 'PSO210G2249' => 'pso', 'PSO339G2411' => 'pso', 'PSO339G2457' => 'pso', 'PSO339G2854' => 'pso', 'PSO339G4288' => 'pso', 'PSO339G4615' => 'pso', 'PSO384G2796' => 'pso', 'PSO384G2940' => 'pso', 'PSO384G4227' => 'pso', 'PSO478G1425' => 'pso', 'PSO541G3863' => 'pso', 'PSO675G0507' => 'pso', 'PSO782G0338' => 'pso', 'PSO832G0644' => 'pso', 'QL01p013664' => 'qlo', 'QL01p036598' => 'qlo', 'QL05p072984' => 'qlo', 'QL08p005768' => 'qlo', 'QL08p032743' => 'qlo', 'QL93p0073_0439' => 'qlo', 'QL93p0073_0444' => 'qlo', 'RcHm_v2.0_Chr5g0002851' => 'rch', 'RcHm_v2.0_Chr5g0055201' => 'rch', 'RcHm_v2.0_Chr5g0061191' => 'rch', 'RcHm_v2.0_Chr7g0203231' => 'rch', 'Rhsim01G0208100' => 'rsi', 'Rhsim01G0208200' => 'rsi', 'Rhsim02G0106500' => 'rsi', 'Rhsim03G0107900' => 'rsi', 'Rhsim06G0163400' => 'rsi', 'Rhsim13G0105200' => 'rsi', 'Sabra04G0006300' => 'sbr', 'Sabra04G0127000' => 'sbr', 'Sabra08G0148700' => 'sbr', 'Sabra09G0117400' => 'sbr', 'SalBow1G3326' => 'sbo', 'SalBow3G3228' => 'sbo', 'SalBow6G1634' => 'sbo', 'SalBow6G3603' => 'sbo', 'SalBow6G5266' => 'sbo', 'SalBow7G2265' => 'sbo', 'SalBow8G0850' => 'sbo', 'SalBow8G2592' => 'sbo', 'Sc05g0009240' => 'sci', 'Sc12g0002300' => 'sci', 'Sc21g0000100' => 'sci', 'Sc21g0004720' => 'sci', 'Sed0002949' => 'sed', 'Sed0004114' => 'sed', 'Sed0004306' => 'sed', 'Sed0006172' => 'sed', 'Sed0008413' => 'sed', 'Sed0013809' => 'sed', 'Sed0019556' => 'sed', 'SEGI_03570' => 'sgi', 'SEGI_07859' => 'sgi', 'SEGI_15042' => 'sgi', 'SEGI_16263' => 'sgi', 'SEGI_16552' => 'sgi', 'SEGI_24331' => 'sgi', 'SEGI_27316' => 'sgi', 'SEGI_29521' => 'sgi', 'SEGI_41342' => 'sgi', 'SGA_v2.0_scaffold27G11617' => 'sas', 'SGA_v2.0_scaffold316G48428' => 'sas', 'SGA_v2.0_scaffold49G18261' => 'sas', 'SGA_v2.0_scaffold7G03831' => 'sas', 'SGA_v2.0_scaffold93G28359' => 'sas', 'SHI02210' => 'shi', 'SHI06028' => 'shi', 'SHI06321' => 'shi', 'SMO111G0012' => 'smo', 'SMO228G0080' => 'smo', 'SMO356G0756' => 'smo', 'Solyc02g080620.3' => 'sly', 'Solyc06g074530.1' => 'sly', 'Solyc11g066890.1' => 'sly', 'Solyc11g072520.3' => 'sly', 'Sopen02g025330' => 'spe', 'Sopen06g031000' => 'spe', 'Sopen09g008240' => 'spe', 'Sopen09g025210' => 'spe', 'Sopen11g026600' => 'spe', 'Sopen11g030170' => 'spe', 'Sp1g10420' => 'spa', 'Sp3g06570' => 'spa', 'Sp4g10660' => 'spa', 'Sp5g16460' => 'spa', 'Sp6g22710' => 'spa', 'TAR365G0112' => 'tar', 'TAR369G0717' => 'tar', 'TAR374G0976' => 'tar', 'TAR623G1128' => 'tar', 'TAR626G1937' => 'tar', 'TAR627G0123' => 'tar', 'TAR628G0305' => 'tar', 'TAR636G1176' => 'tar', 'TAR636G2442' => 'tar', 'THA.LOC104800556' => 'tha', 'THA.LOC104809501' => 'tha', 'THA.LOC104815126' => 'tha', 'THA.LOC104815732' => 'tha', 'THA.LOC104823528' => 'tha', 'Thecc.02G365600' => 'tca', 'Thecc.06G222300' => 'tca', 'Thecc.09G261800' => 'tca', 'Thecc.09G291400' => 'tca', 'Thhalv10003028m.g' => 'esa', 'Thhalv10007886m.g' => 'esa', 'Thhalv10016085m.g' => 'esa', 'Thhalv10016681m.g' => 'esa', 'Thhalv10020951m.g' => 'esa', 'TPR.G15598' => 'tpr', 'TPR.G29305' => 'tpr', 'TPR.G32395' => 'tpr', 'TPR.G36998' => 'tpr', 'TPR.G4227' => 'tpr', 'TWI18G1433' => 'twi', 'TWI31G0755' => 'twi', 'TWI38G0912' => 'twi', 'TWI75G1097' => 'twi', 'TWI75G1619' => 'twi', 'TWI79G1336' => 'twi', 'unitig_0.g943' => 'ugi', 'unitig_0.g944' => 'ugi', 'unitig_22.g6646' => 'ugi', 'unitig_37.g12681' => 'ugi', 'unitig_8.g3290' => 'ugi', 'vmacro03278' => 'vma', 'vmacro12197' => 'vma', 'vmacro14478' => 'vma', 'vmacro15787' => 'vma', 'vmacro15789' => 'vma', 'vmacro15790' => 'vma', 'vmacro15806' => 'vma', 'vmacro22907' => 'vma', 'vmacro22908' => 'vma', 'vmacro22909' => 'vma', 'vmacro23108' => 'vma', 'VMungo0540G0540' => 'vmu', 'VMungo0540G2468' => 'vmu', 'VMungo1080G0390' => 'vmu', 'VMungo1080G1165' => 'vmu', 'VMungo1127G0170' => 'vmu', 'VMungo1127G2099' => 'vmu', 'VMungo1215G3013' => 'vmu', 'Zm00001eb013110' => 'zma', 'Zm00001eb084260' => 'zma', 'Zm00001eb096110' => 'zma', 'Zm00001eb217510' => 'zma', 'Zm00001eb322550' => 'zma', 'Zm00001eb390770' => 'zma', 'Zm00001eb397170' => 'zma', 'Zm00001eb404610' => 'zma', 'Zm00001eb421790' => 'zma' ) $gf_id = 'HOM05D000911' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000911' ) $data_identifier = 'HOM05D000911' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 16, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 5, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 6, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 8, 'nnu' => (int) 16, 'oeu' => (int) 8, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 5, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 16, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421790' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000911', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27780' => 'bna', 'A03p35380' => 'bna', 'A04p21160' => 'bna', 'A05p40570' => 'bna', 'A06p26900' => 'bna', 'A08p33230' => 'bna', 'A09p65960' => 'bna', 'A10p18290' => 'bna', 'Aa31LG1G12990' => 'aar', 'Aa31LG1G2980' => 'aar', 'Aa31LG4G14320' => 'aar', 'Aa31LG7G11800' => 'aar', 'Aa31sc36G50' => 'aar', 'Aa31sc36G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3721' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5459' => 'aag', 'Actinidia03028' => 'ach', 'Actinidia03753' => 'ach', 'Actinidia04187' => 'ach', 'Actinidia05509' => 'ach', 'Actinidia24180' => 'ach', 'Actinidia26906' => 'ach', 'Actinidia37097' => 'ach', 'Actinidia38249' => 'ach', 'Ah.01g003470' => 'amhyb', 'Ah.01g004580' => 'amhyb', 'Ah.01g014850' => 'amhyb', 'Ah.01g016830' => 'amhyb', 'Ah.14g088000' => 'amhyb', 'AL1G22980' => 'aly', 'AL3G18990' => 'aly', 'AL4G22440' => 'aly', 'AL4G33180' => 'aly', 'AL5G22920' => 'aly', 'AL6G33660' => 'aly', 'AL8G20720' => 'aly', 'Aqoxy1G00935' => 'aox', 'Aqoxy1G02094' => 'aox', 'Aqoxy2G01239' => 'aox', 'Aqoxy4G01870' => 'aox', 'Aqoxy7G00450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.36ZVTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71EM27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5D6C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH3WRE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3NCM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RIM768' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YB5YRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z36GDV' => 'arhy', 'AT1G08250' => 'ath', 'AT1G11790' => 'ath', 'AT2G27820' => 'ath', 'AT3G07630' => 'ath', 'AT3G44720' => 'ath', 'AT5G22630' => 'ath', 'ATR0693G304' => 'atr', 'ATR0794G109' => 'atr', 'ATR0820G120' => 'atr', 'ATR1159G064' => 'atr', 'Atru.chr10.2239' => 'acertr', 'Atru.chr3.3371' => 'acertr', 'Atru.chr6.3202' => 'acertr', 'AUR62006499' => 'cqu', 'AUR62012718' => 'cqu', 'AUR62021938' => 'cqu', 'AUR62023932' => 'cqu', 'AUR62025034' => 'cqu', 'AUR62025035' => 'cqu', 'AUR62038307' => 'cqu', 'AUR62043466' => 'cqu', 'BcaB02g10748' => 'bca', 'BcaB03g13231' => 'bca', 'BcaB03g14689' => 'bca', 'BcaB05g22716' => 'bca', 'BcaB06g28172' => 'bca', 'BcaB08g36413' => 'bca', 'BcaC01g02186' => 'bca', 'BcaC01g04272' => 'bca', 'BcaC02g08080' => 'bca', 'BcaC02g08227' => 'bca', 'BcaC03g13901' => 'bca', 'BcaC04g19593' => 'bca', 'BcaC04g20874' => 'bca', 'BcaC05g29557' => 'bca', 'BcaC06g35505' => 'bca', 'BcaC07g41954' => 'bca', 'BcaC07g41955' => 'bca', 'BcaC07g41956' => 'bca', 'BcaC07g42519' => 'bca', 'BcaC07g42520' => 'bca', 'BcaC07g42523' => 'bca', 'BcaC07g42524' => 'bca', 'BcaC07g42525' => 'bca', 'BcaC08g47480' => 'bca', 'BcaC08g47481' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00530' => 'bna', 'BolC2t07178H' => 'bol', 'BolC3t16567H' => 'bol', 'BolC4t27234H' => 'bol', 'BolC5t29728H' => 'bol', 'BolC5t34622H' => 'bol', 'BolC6t40321H' => 'bol', 'BolC7t42028H' => 'bol', 'BolC8t49125H' => 'bol', 'BolC8t52538H' => 'bol', 'BolC8t52539H' => 'bol', 'BolC9t56681H' => 'bol', 'BolC9t58266H' => 'bol', 'BolSC21t60294H' => 'bol', 'BraA02t05670Z' => 'bra', 'BraA03t12716Z' => 'bra', 'BraA04t17685Z' => 'bra', 'BraA05t22788Z' => 'bra', 'BraA06t24032Z' => 'bra', 'BraA06t25625Z' => 'bra', 'BraA07t27930Z' => 'bra', 'BraA08t35242Z' => 'bra', 'BraA09t38609Z' => 'bra', 'BraA10t43905Z' => 'bra', 'C02p11060' => 'bna', 'C03p42990' => 'bna', 'C03p67310' => 'bna', 'C04p56990' => 'bna', 'C04p58660' => 'bna', 'C05p09890' => 'bna', 'C05p59680' => 'bna', 'C06p19830' => 'bna', 'C06p53040' => 'bna', 'C07p15230' => 'bna', 'C08p50070' => 'bna', 'C08p50090' => 'bna', 'C09p38330' => 'bna', 'C09p53940' => 'bna', 'CAN.G1014.1' => 'can', 'CAN.G644.30' => 'can', 'CAN.G84.47' => 'can', 'CAN.G919.8' => 'can', 'CANSAT54G0113' => 'cansat', 'CANSAT54G1286' => 'cansat', 'CANSAT64G1020' => 'cansat', 'CARHR008080' => 'chi', 'CARHR008090' => 'chi', 'CARHR012130' => 'chi', 'CARHR038390' => 'chi', 'CARHR082330' => 'chi', 'CARHR120520' => 'chi', 'CARHR151470' => 'chi', 'CARHR190950' => 'chi', 'Carub.0001s0760' => 'cru', 'Carub.0001s1146' => 'cru', 'Carub.0003s0721' => 'cru', 'Carub.0004s0858' => 'cru', 'Carub.0005s1040' => 'cru', 'Carub.0006s2035' => 'cru', 'Carub.0015s0005' => 'cru', 'Ca_01607_v3' => 'car', 'Ca_01677_v3' => 'car', 'Ca_06087_v3' => 'car', 'Ca_19238_v3' => 'car', 'Ca_19373_v3' => 'car', 'Ca_21079_v3' => 'car', 'CBR_g54016' => 'cbr', 'CBR_g54018' => 'cbr', 'CBR_g54020' => 'cbr', 'Cc01_g09780' => 'ccan', 'Cc01_g11680' => 'ccan', 'Cc02_g15610' => 'ccan', 'Cc05_g04350' => 'ccan', 'Cc09_g01580' => 'ccan', 'CDE01G0795' => 'cde', 'CDE02G2024' => 'cde', 'CDE02G2260' => 'cde', 'CDE02G4561' => 'cde', 'CDE05G2733' => 'cde', 'CDE05G3422' => 'cde', 'CDE06G2003' => 'cde', 'CDE08G0576' => 'cde', 'CDE09G0048' => 'cde', 'CDE11G0805' => 'cde', 'Cfa003644' => 'cfa', 'Cfa006290' => 'cfa', 'Cfa010080' => 'cfa', 'Cfa011376' => 'cfa', 'Cfa011576' => 'cfa', 'Cfa011577' => 'cfa', 'Cfa014389' => 'cfa', 'Ciclev10006044m.g' => 'ccl', 'Ciclev10006954m.g' => 'ccl', 'Ciclev10015131m.g' => 'ccl', 'Ciclev10015580m.g' => 'ccl', 'Ciclev10028359m.g' => 'ccl', 'Ciclev10028573m.g' => 'ccl', 'CiPaw.03G159300' => 'cil', 'CiPaw.04G115100' => 'cil', 'CiPaw.09G092800' => 'cil', 'CiPaw.10G071800' => 'cil', 'CiPaw.13G105800' => 'cil', 'CiPaw.13G141000' => 'cil', 'CiPaw.14G103400' => 'cil', 'ClCG01G012700' => 'cla', 'ClCG01G012720' => 'cla', 'ClCG01G021920' => 'cla', 'ClCG02G008870' => 'cla', 'ClCG02G020840' => 'cla', 'ClCG02G021930' => 'cla', 'COL.COLO4_19302' => 'col', 'COL.COLO4_25262' => 'col', 'COL.COLO4_31788' => 'col', 'Cpa.g.c34684' => 'cpa', 'Cpa.g.c36520.1' => 'cpa', 'Cpa.g.c45626' => 'cpa', 'Cpa.g.sc121.17' => 'cpa', 'Cpa.g.sc13.22' => 'cpa', 'Cpa.g.sc87.88' => 'cpa', 'Cre06.g261800' => 'cre', 'CsaV3_1G014500' => 'csa', 'CsaV3_1G014510' => 'csa', 'CsaV3_2G034880' => 'csa', 'CsaV3_6G014760' => 'csa', 'CsaV3_6G021500' => 'csa', 'CsaV3_6G048980' => 'csa', 'CSS0002511' => 'camsi', 'CSS0007556' => 'camsi', 'CSS0008532' => 'camsi', 'CSS0009709' => 'camsi', 'CSS0010486' => 'camsi', 'CSS0016768' => 'camsi', 'CSS0023512' => 'camsi', 'CSS0025341' => 'camsi', 'CSS0027999' => 'camsi', 'CSS0028944' => 'camsi', 'CSS0032292' => 'camsi', 'CSS0032464' => 'camsi', 'CSS0037153' => 'camsi', 'CSS0039256' => 'camsi', 'CSS0048392' => 'camsi', 'CSS0050458' => 'camsi', 'DCAR_004224' => 'dca', 'DCAR_006147' => 'dca', 'DCAR_006465' => 'dca', 'DCAR_008159' => 'dca', 'DCAR_012164' => 'dca', 'DCAR_019764' => 'dca', 'Dinv05418' => 'din', 'Dinv10839' => 'din', 'Dinv12521' => 'din', 'Dinv13900' => 'din', 'Dinv29426' => 'din', 'Duzib150G0263' => 'dzi', 'Duzib168G1178' => 'dzi', 'Duzib168G1924' => 'dzi', 'Duzib170G0299' => 'dzi', 'Duzib170G0813' => 'dzi', 'Duzib235G1128' => 'dzi', 'Duzib248G1060' => 'dzi', 'ECA232G1910' => 'eca', 'ECA233G4621' => 'eca', 'ECA238G1216' => 'eca', 'ECA238G1784' => 'eca', 'ECA248G1242' => 'eca', 'EL10Ac8g20071' => 'bvu', 'EL10Ac9g21086' => 'bvu', 'EL10Ac9g22407' => 'bvu', 'EL10Ac9g22412' => 'bvu', 'Eucgr.A01119' => 'egr', 'Eucgr.E04043' => 'egr', 'Eucgr.J00428' => 'egr', 'Eucgr.J00958' => 'egr', 'FAN11G3091' => 'fan', 'FAN11G3651' => 'fan', 'FAN16G2566' => 'fan', 'FAN21G3155' => 'fan', 'FAN21G3400' => 'fan', 'FAN21G3543' => 'fan', 'FAN25G0234' => 'fan', 'FAN25G1422' => 'fan', 'FAN25G3392' => 'fan', 'FvH4_3g01940' => 'fve', 'FvH4_3g29870' => 'fve', 'FvH4_3g33680' => 'fve', 'Glyma.09G004200' => 'gma', 'Glyma.11G151288' => 'gma', 'Glyma.11G189100' => 'gma', 'Glyma.12G072500' => 'gma', 'Glyma.12G085500' => 'gma', 'Glyma.12G181800' => 'gma', 'Glyma.12G193000' => 'gma', 'Glyma.13G309300' => 'gma', 'Glyma.13G319000' => 'gma', 'Glyma.17G012600' => 'gma', 'Gohir.A06G148600' => 'ghi', 'Gohir.A07G115800' => 'ghi', 'Gohir.A08G003600' => 'ghi', 'Gohir.A09G093300' => 'ghi', 'Gohir.A09G105400' => 'ghi', 'Gohir.A09G105500' => 'ghi', 'Gohir.D06G154600' => 'ghi', 'Gohir.D07G120200' => 'ghi', 'Gohir.D08G013900' => 'ghi', 'Gohir.D09G093100' => 'ghi', 'Gohir.D09G102200' => 'ghi', 'Gohir.D09G102300' => 'ghi', 'Gorai.001G129400' => 'gra', 'Gorai.004G008200' => 'gra', 'Gorai.006G109800' => 'gra', 'Gorai.006G119500' => 'gra', 'Gorai.006G121300' => 'gra', 'Gorai.010G180700' => 'gra', 'GSVIVG01012716001' => 'vvi', 'GSVIVG01025118001' => 'vvi', 'GSVIVG01030439001' => 'vvi', 'GSVIVG01031397001' => 'vvi', 'HanXRQChr01g0004201' => 'han', 'HanXRQChr02g0054941' => 'han', 'HanXRQChr05g0141811' => 'han', 'HanXRQChr07g0197751' => 'han', 'HanXRQChr11g0346691' => 'han', 'HanXRQChr13g0396971' => 'han', 'HanXRQChr14g0432951' => 'han', 'HanXRQChr14g0452001' => 'han', 'HanXRQChr15g0496681' => 'han', 'HanXRQChr17g0557491' => 'han', 'HanXRQChr17g0557501' => 'han', 'Haze_06809' => 'cav', 'Haze_12852' => 'cav', 'Haze_15850' => 'cav', 'Haze_23446' => 'cav', 'Haze_23942' => 'cav', 'Haze_23943' => 'cav', 'Hma1.2p1_0091F.1_g046450' => 'hma', 'Hma1.2p1_0128F.1_g059910' => 'hma', 'Hma1.2p1_0249F.1_g102260' => 'hma', 'Hma1.2p1_0453F.1_g156190' => 'hma', 'Hma1.2p1_0695F.1_g204380' => 'hma', 'Hma1.2p1_0749F.1_g212650' => 'hma', 'Hma1.2p1_2156F.1_g315420' => 'hma', 'Hma1.2p1_2686F.1_g326940' => 'hma', 'HPP92_006428' => 'vpl', 'HPP92_012069' => 'vpl', 'HPP92_014129' => 'vpl', 'HPP92_014133' => 'vpl', 'HPP92_017315' => 'vpl', 'HPP92_026445' => 'vpl', 'HPP92_026446' => 'vpl', 'Hund00774' => 'sun', 'Hund07682' => 'sun', 'Hund21413' => 'sun', 'Hund23462' => 'sun', 'Hund23463' => 'sun', 'Lalb_Chr03g0027911' => 'lal', 'Lalb_Chr13g0304271' => 'lal', 'Lalb_Chr19g0137471' => 'lal', 'Lalb_Chr22g0350651' => 'lal', 'Lalb_Chr24g0395151' => 'lal', 'Lj1A1231T40' => 'lonja', 'Lj1A221T48' => 'lonja', 'Lj1C924T12' => 'lonja', 'Lj2C993G6' => 'lonja', 'Lj3g0005790' => 'lja', 'Lj3g0015432' => 'lja', 'Lj3g0017722' => 'lja', 'Lj3g0018497' => 'lja', 'Lj4g0025071' => 'lja', 'Lsat_1_v5_gn_1_129680' => 'lsa', 'Lsat_1_v5_gn_2_25321' => 'lsa', 'Lsat_1_v5_gn_2_95461' => 'lsa', 'Lsat_1_v5_gn_4_159620' => 'lsa', 'Lsat_1_v5_gn_6_41301' => 'lsa', 'Lsat_1_v5_gn_6_74660' => 'lsa', 'Lsat_1_v5_gn_7_11520' => 'lsa', 'Lsat_1_v5_gn_9_67680' => 'lsa', 'Manes.04G008300' => 'mes', 'Manes.04G008400' => 'mes', 'Manes.04G026500' => 'mes', 'Manes.10G135300' => 'mes', 'Manes.11G157300' => 'mes', 'Manes.12G074000' => 'mes', 'Manes.16G006200' => 'mes', 'Manes.17G026400' => 'mes', 'Mapoly0024s0086' => 'mpo', 'Mapoly0024s0087' => 'mpo', 'Mapoly0071s0057' => 'mpo', 'Mapoly0204s0012' => 'mpo', 'MBI04_g37681_MAGBIO' => 'mbi', 'MBI05_g17779_MAGBIO' => 'mbi', 'MBI12_g31184_MAGBIO' => 'mbi', 'MBI17_g11083_MAGBIO' => 'mbi', 'MBI18_g03883_MAGBIO' => 'mbi', 'MBI18_g28940_MAGBIO' => 'mbi', 'MCO01G690' => 'mco', 'MD03G1109900' => 'mdo', 'MD03G1134800' => 'mdo', 'MD05G1348000' => 'mdo', 'MD10G1322400' => 'mdo', 'MD11G1123300' => 'mdo', 'MD11G1157600' => 'mdo', 'Medtr2g084875' => 'mtr', 'Medtr2g088130' => 'mtr', 'Medtr4g055310' => 'mtr', 'Medtr4g061070' => 'mtr', 'Medtr4g132250' => 'mtr', 'MELO3C004795.2' => 'cme', 'MELO3C004797.2' => 'cme', 'MELO3C007396.2' => 'cme', 'MELO3C019277.2' => 'cme', 'MELO3C021449.2' => 'cme', 'MELO3C025736.2' => 'cme', 'Migut.D02175' => 'egut', 'Migut.H01573' => 'egut', 'Migut.M01327' => 'egut', 'Migut.N02513' => 'egut', 'MSTRG.14638' => 'ama', 'MSTRG.18632' => 'ama', 'MSTRG.7203' => 'ama', 'Nitab4.5_0000533g0140' => 'nta', 'Nitab4.5_0000888g0150' => 'nta', 'Nitab4.5_0001453g0040' => 'nta', 'Nitab4.5_0002827g0090' => 'nta', 'Nitab4.5_0003082g0040' => 'nta', 'Nitab4.5_0007799g0040' => 'nta', 'Nitab4.5_0008983g0010' => 'nta', 'Nitab4.5_0009017g0020' => 'nta', 'Nn1g02132' => 'nnu', 'Nn1g03492' => 'nnu', 'Nn1g03493' => 'nnu', 'Nn1g03494' => 'nnu', 'Nn1g07164' => 'nnu', 'Nn1g07291' => 'nnu', 'Nn2g10655' => 'nnu', 'Nn2g11652' => 'nnu', 'Nn2g14008' => 'nnu', 'Nn3g17476' => 'nnu', 'Nn3g17477' => 'nnu', 'Nn4g22370' => 'nnu', 'Nn4g25255' => 'nnu', 'Nn5g27755' => 'nnu', 'Nn6g34260' => 'nnu', 'Nn6g35041' => 'nnu', 'Oeu005924.1' => 'oeu', 'Oeu008383.1' => 'oeu', 'Oeu014928.1' => 'oeu', 'Oeu019889.1' => 'oeu', 'Oeu022271.1' => 'oeu', 'Oeu025271.1' => 'oeu', 'Oeu036302.1' => 'oeu', 'Oeu044100.1' => 'oeu', 'Os01g0528300' => 'osa', 'Os03g0286200' => 'osa', 'Os04g0406600' => 'osa', 'Os07g0512000' => 'osa', 'Os07g0694600' => 'osa', 'Os08g0411000' => 'osa', 'Os09g0565700' => 'osa', 'Os09g0566050' => 'osa', 'Os10g0523700' => 'osa', 'Peaxi162Scf00002g00514' => 'pax', 'Peaxi162Scf00047g01817' => 'pax', 'Peaxi162Scf00114g00001' => 'pax', 'Peaxi162Scf00147g00613' => 'pax', 'Peaxi162Scf00389g00425' => 'pax', 'PGR042G1139' => 'pgr', 'PGR042G3273' => 'pgr', 'PGR102G2180' => 'pgr', 'PGR119G0234' => 'pgr', 'PGR119G0668' => 'pgr', 'PGSC0003DMG400007122' => 'stu', 'PGSC0003DMG400016478' => 'stu', 'PGSC0003DMG400025374' => 'stu', 'PGSC0003DMG400026536' => 'stu', 'Phvul.003G079600' => 'pvu', 'Phvul.005G115600' => 'pvu', 'Phvul.005G127100' => 'pvu', 'Phvul.006G149500' => 'pvu', 'Phvul.006G149600' => 'pvu', 'Phvul.011G071800' => 'pvu', 'Phvul.011G090400' => 'pvu', 'Potri.004G013400' => 'ptr', 'Potri.004G188100' => 'ptr', 'Potri.008G195500' => 'ptr', 'Potri.009G148800' => 'ptr', 'Potri.011G004700' => 'ptr', 'Pp3c17_22810' => 'ppa', 'Pp3c18_4480' => 'ppa', 'Pp3c19_13030' => 'ppa', 'Pp3c1_33620' => 'ppa', 'Pp3c2_9380' => 'ppa', 'PRCOL_00001023' => 'pco', 'Prupe.3G216300' => 'ppe', 'Prupe.4G019500' => 'ppe', 'Prupe.6G092500' => 'ppe', 'Prupe.6G119200' => 'ppe', 'Psat0s1945g0080' => 'psa', 'Psat0s4167g0040' => 'psa', 'Psat1g185800' => 'psa', 'Psat4g006440' => 'psa', 'Psat4g006480' => 'psa', 'Psat4g168120' => 'psa', 'Psat5g255680' => 'psa', 'Psat5g261760' => 'psa', 'Psat7g222120' => 'psa', 'PSO063G7252' => 'pso', 'PSO170G4778' => 'pso', 'PSO210G2249' => 'pso', 'PSO339G2411' => 'pso', 'PSO339G2457' => 'pso', 'PSO339G2854' => 'pso', 'PSO339G4288' => 'pso', 'PSO339G4615' => 'pso', 'PSO384G2796' => 'pso', 'PSO384G2940' => 'pso', 'PSO384G4227' => 'pso', 'PSO478G1425' => 'pso', 'PSO541G3863' => 'pso', 'PSO675G0507' => 'pso', 'PSO782G0338' => 'pso', 'PSO832G0644' => 'pso', 'QL01p013664' => 'qlo', 'QL01p036598' => 'qlo', 'QL05p072984' => 'qlo', 'QL08p005768' => 'qlo', 'QL08p032743' => 'qlo', 'QL93p0073_0439' => 'qlo', 'QL93p0073_0444' => 'qlo', 'RcHm_v2.0_Chr5g0002851' => 'rch', 'RcHm_v2.0_Chr5g0055201' => 'rch', 'RcHm_v2.0_Chr5g0061191' => 'rch', 'RcHm_v2.0_Chr7g0203231' => 'rch', 'Rhsim01G0208100' => 'rsi', 'Rhsim01G0208200' => 'rsi', 'Rhsim02G0106500' => 'rsi', 'Rhsim03G0107900' => 'rsi', 'Rhsim06G0163400' => 'rsi', 'Rhsim13G0105200' => 'rsi', 'Sabra04G0006300' => 'sbr', 'Sabra04G0127000' => 'sbr', 'Sabra08G0148700' => 'sbr', 'Sabra09G0117400' => 'sbr', 'SalBow1G3326' => 'sbo', 'SalBow3G3228' => 'sbo', 'SalBow6G1634' => 'sbo', 'SalBow6G3603' => 'sbo', 'SalBow6G5266' => 'sbo', 'SalBow7G2265' => 'sbo', 'SalBow8G0850' => 'sbo', 'SalBow8G2592' => 'sbo', 'Sc05g0009240' => 'sci', 'Sc12g0002300' => 'sci', 'Sc21g0000100' => 'sci', 'Sc21g0004720' => 'sci', 'Sed0002949' => 'sed', 'Sed0004114' => 'sed', 'Sed0004306' => 'sed', 'Sed0006172' => 'sed', 'Sed0008413' => 'sed', 'Sed0013809' => 'sed', 'Sed0019556' => 'sed', 'SEGI_03570' => 'sgi', 'SEGI_07859' => 'sgi', 'SEGI_15042' => 'sgi', 'SEGI_16263' => 'sgi', 'SEGI_16552' => 'sgi', 'SEGI_24331' => 'sgi', 'SEGI_27316' => 'sgi', 'SEGI_29521' => 'sgi', 'SEGI_41342' => 'sgi', 'SGA_v2.0_scaffold27G11617' => 'sas', 'SGA_v2.0_scaffold316G48428' => 'sas', 'SGA_v2.0_scaffold49G18261' => 'sas', 'SGA_v2.0_scaffold7G03831' => 'sas', 'SGA_v2.0_scaffold93G28359' => 'sas', 'SHI02210' => 'shi', 'SHI06028' => 'shi', 'SHI06321' => 'shi', 'SMO111G0012' => 'smo', 'SMO228G0080' => 'smo', 'SMO356G0756' => 'smo', 'Solyc02g080620.3' => 'sly', 'Solyc06g074530.1' => 'sly', 'Solyc11g066890.1' => 'sly', 'Solyc11g072520.3' => 'sly', 'Sopen02g025330' => 'spe', 'Sopen06g031000' => 'spe', 'Sopen09g008240' => 'spe', 'Sopen09g025210' => 'spe', 'Sopen11g026600' => 'spe', 'Sopen11g030170' => 'spe', 'Sp1g10420' => 'spa', 'Sp3g06570' => 'spa', 'Sp4g10660' => 'spa', 'Sp5g16460' => 'spa', 'Sp6g22710' => 'spa', 'TAR365G0112' => 'tar', 'TAR369G0717' => 'tar', 'TAR374G0976' => 'tar', 'TAR623G1128' => 'tar', 'TAR626G1937' => 'tar', 'TAR627G0123' => 'tar', 'TAR628G0305' => 'tar', 'TAR636G1176' => 'tar', 'TAR636G2442' => 'tar', 'THA.LOC104800556' => 'tha', 'THA.LOC104809501' => 'tha', 'THA.LOC104815126' => 'tha', 'THA.LOC104815732' => 'tha', 'THA.LOC104823528' => 'tha', 'Thecc.02G365600' => 'tca', 'Thecc.06G222300' => 'tca', 'Thecc.09G261800' => 'tca', 'Thecc.09G291400' => 'tca', 'Thhalv10003028m.g' => 'esa', 'Thhalv10007886m.g' => 'esa', 'Thhalv10016085m.g' => 'esa', 'Thhalv10016681m.g' => 'esa', 'Thhalv10020951m.g' => 'esa', 'TPR.G15598' => 'tpr', 'TPR.G29305' => 'tpr', 'TPR.G32395' => 'tpr', 'TPR.G36998' => 'tpr', 'TPR.G4227' => 'tpr', 'TWI18G1433' => 'twi', 'TWI31G0755' => 'twi', 'TWI38G0912' => 'twi', 'TWI75G1097' => 'twi', 'TWI75G1619' => 'twi', 'TWI79G1336' => 'twi', 'unitig_0.g943' => 'ugi', 'unitig_0.g944' => 'ugi', 'unitig_22.g6646' => 'ugi', 'unitig_37.g12681' => 'ugi', 'unitig_8.g3290' => 'ugi', 'vmacro03278' => 'vma', 'vmacro12197' => 'vma', 'vmacro14478' => 'vma', 'vmacro15787' => 'vma', 'vmacro15789' => 'vma', 'vmacro15790' => 'vma', 'vmacro15806' => 'vma', 'vmacro22907' => 'vma', 'vmacro22908' => 'vma', 'vmacro22909' => 'vma', 'vmacro23108' => 'vma', 'VMungo0540G0540' => 'vmu', 'VMungo0540G2468' => 'vmu', 'VMungo1080G0390' => 'vmu', 'VMungo1080G1165' => 'vmu', 'VMungo1127G0170' => 'vmu', 'VMungo1127G2099' => 'vmu', 'VMungo1215G3013' => 'vmu', 'Zm00001eb013110' => 'zma', 'Zm00001eb084260' => 'zma', 'Zm00001eb096110' => 'zma', 'Zm00001eb217510' => 'zma', 'Zm00001eb322550' => 'zma', 'Zm00001eb390770' => 'zma', 'Zm00001eb397170' => 'zma', 'Zm00001eb404610' => 'zma', 'Zm00001eb421790' => 'zma' ), 'gf_id' => 'HOM05D000911', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000911' ), 'data_identifier' => 'HOM05D000911', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000911', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27780' => 'bna', 'A03p35380' => 'bna', 'A04p21160' => 'bna', 'A05p40570' => 'bna', 'A06p26900' => 'bna', 'A08p33230' => 'bna', 'A09p65960' => 'bna', 'A10p18290' => 'bna', 'Aa31LG1G12990' => 'aar', 'Aa31LG1G2980' => 'aar', 'Aa31LG4G14320' => 'aar', 'Aa31LG7G11800' => 'aar', 'Aa31sc36G50' => 'aar', 'Aa31sc36G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3721' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5459' => 'aag', 'Actinidia03028' => 'ach', 'Actinidia03753' => 'ach', 'Actinidia04187' => 'ach', 'Actinidia05509' => 'ach', 'Actinidia24180' => 'ach', 'Actinidia26906' => 'ach', 'Actinidia37097' => 'ach', 'Actinidia38249' => 'ach', 'Ah.01g003470' => 'amhyb', 'Ah.01g004580' => 'amhyb', 'Ah.01g014850' => 'amhyb', 'Ah.01g016830' => 'amhyb', 'Ah.14g088000' => 'amhyb', 'AL1G22980' => 'aly', 'AL3G18990' => 'aly', 'AL4G22440' => 'aly', 'AL4G33180' => 'aly', 'AL5G22920' => 'aly', 'AL6G33660' => 'aly', 'AL8G20720' => 'aly', 'Aqoxy1G00935' => 'aox', 'Aqoxy1G02094' => 'aox', 'Aqoxy2G01239' => 'aox', 'Aqoxy4G01870' => 'aox', 'Aqoxy7G00450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.36ZVTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71EM27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5D6C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH3WRE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3NCM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RIM768' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YB5YRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z36GDV' => 'arhy', 'AT1G08250' => 'ath', 'AT1G11790' => 'ath', 'AT2G27820' => 'ath', 'AT3G07630' => 'ath', 'AT3G44720' => 'ath', 'AT5G22630' => 'ath', 'ATR0693G304' => 'atr', 'ATR0794G109' => 'atr', 'ATR0820G120' => 'atr', 'ATR1159G064' => 'atr', 'Atru.chr10.2239' => 'acertr', 'Atru.chr3.3371' => 'acertr', 'Atru.chr6.3202' => 'acertr', 'AUR62006499' => 'cqu', 'AUR62012718' => 'cqu', 'AUR62021938' => 'cqu', 'AUR62023932' => 'cqu', 'AUR62025034' => 'cqu', 'AUR62025035' => 'cqu', 'AUR62038307' => 'cqu', 'AUR62043466' => 'cqu', 'BcaB02g10748' => 'bca', 'BcaB03g13231' => 'bca', 'BcaB03g14689' => 'bca', 'BcaB05g22716' => 'bca', 'BcaB06g28172' => 'bca', 'BcaB08g36413' => 'bca', 'BcaC01g02186' => 'bca', 'BcaC01g04272' => 'bca', 'BcaC02g08080' => 'bca', 'BcaC02g08227' => 'bca', 'BcaC03g13901' => 'bca', 'BcaC04g19593' => 'bca', 'BcaC04g20874' => 'bca', 'BcaC05g29557' => 'bca', 'BcaC06g35505' => 'bca', 'BcaC07g41954' => 'bca', 'BcaC07g41955' => 'bca', 'BcaC07g41956' => 'bca', 'BcaC07g42519' => 'bca', 'BcaC07g42520' => 'bca', 'BcaC07g42523' => 'bca', 'BcaC07g42524' => 'bca', 'BcaC07g42525' => 'bca', 'BcaC08g47480' => 'bca', 'BcaC08g47481' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00530' => 'bna', 'BolC2t07178H' => 'bol', 'BolC3t16567H' => 'bol', 'BolC4t27234H' => 'bol', 'BolC5t29728H' => 'bol', 'BolC5t34622H' => 'bol', 'BolC6t40321H' => 'bol', 'BolC7t42028H' => 'bol', 'BolC8t49125H' => 'bol', 'BolC8t52538H' => 'bol', 'BolC8t52539H' => 'bol', 'BolC9t56681H' => 'bol', 'BolC9t58266H' => 'bol', 'BolSC21t60294H' => 'bol', 'BraA02t05670Z' => 'bra', 'BraA03t12716Z' => 'bra', 'BraA04t17685Z' => 'bra', 'BraA05t22788Z' => 'bra', 'BraA06t24032Z' => 'bra', 'BraA06t25625Z' => 'bra', 'BraA07t27930Z' => 'bra', 'BraA08t35242Z' => 'bra', 'BraA09t38609Z' => 'bra', 'BraA10t43905Z' => 'bra', 'C02p11060' => 'bna', 'C03p42990' => 'bna', 'C03p67310' => 'bna', 'C04p56990' => 'bna', 'C04p58660' => 'bna', 'C05p09890' => 'bna', 'C05p59680' => 'bna', 'C06p19830' => 'bna', 'C06p53040' => 'bna', 'C07p15230' => 'bna', 'C08p50070' => 'bna', 'C08p50090' => 'bna', 'C09p38330' => 'bna', 'C09p53940' => 'bna', 'CAN.G1014.1' => 'can', 'CAN.G644.30' => 'can', 'CAN.G84.47' => 'can', 'CAN.G919.8' => 'can', 'CANSAT54G0113' => 'cansat', 'CANSAT54G1286' => 'cansat', 'CANSAT64G1020' => 'cansat', 'CARHR008080' => 'chi', 'CARHR008090' => 'chi', 'CARHR012130' => 'chi', 'CARHR038390' => 'chi', 'CARHR082330' => 'chi', 'CARHR120520' => 'chi', 'CARHR151470' => 'chi', 'CARHR190950' => 'chi', 'Carub.0001s0760' => 'cru', 'Carub.0001s1146' => 'cru', 'Carub.0003s0721' => 'cru', 'Carub.0004s0858' => 'cru', 'Carub.0005s1040' => 'cru', 'Carub.0006s2035' => 'cru', 'Carub.0015s0005' => 'cru', 'Ca_01607_v3' => 'car', 'Ca_01677_v3' => 'car', 'Ca_06087_v3' => 'car', 'Ca_19238_v3' => 'car', 'Ca_19373_v3' => 'car', 'Ca_21079_v3' => 'car', 'CBR_g54016' => 'cbr', 'CBR_g54018' => 'cbr', 'CBR_g54020' => 'cbr', 'Cc01_g09780' => 'ccan', 'Cc01_g11680' => 'ccan', 'Cc02_g15610' => 'ccan', 'Cc05_g04350' => 'ccan', 'Cc09_g01580' => 'ccan', 'CDE01G0795' => 'cde', 'CDE02G2024' => 'cde', 'CDE02G2260' => 'cde', 'CDE02G4561' => 'cde', 'CDE05G2733' => 'cde', 'CDE05G3422' => 'cde', 'CDE06G2003' => 'cde', 'CDE08G0576' => 'cde', 'CDE09G0048' => 'cde', 'CDE11G0805' => 'cde', 'Cfa003644' => 'cfa', 'Cfa006290' => 'cfa', 'Cfa010080' => 'cfa', 'Cfa011376' => 'cfa', 'Cfa011576' => 'cfa', 'Cfa011577' => 'cfa', 'Cfa014389' => 'cfa', 'Ciclev10006044m.g' => 'ccl', 'Ciclev10006954m.g' => 'ccl', 'Ciclev10015131m.g' => 'ccl', 'Ciclev10015580m.g' => 'ccl', 'Ciclev10028359m.g' => 'ccl', 'Ciclev10028573m.g' => 'ccl', 'CiPaw.03G159300' => 'cil', 'CiPaw.04G115100' => 'cil', 'CiPaw.09G092800' => 'cil', 'CiPaw.10G071800' => 'cil', 'CiPaw.13G105800' => 'cil', 'CiPaw.13G141000' => 'cil', 'CiPaw.14G103400' => 'cil', 'ClCG01G012700' => 'cla', 'ClCG01G012720' => 'cla', 'ClCG01G021920' => 'cla', 'ClCG02G008870' => 'cla', 'ClCG02G020840' => 'cla', 'ClCG02G021930' => 'cla', 'COL.COLO4_19302' => 'col', 'COL.COLO4_25262' => 'col', 'COL.COLO4_31788' => 'col', 'Cpa.g.c34684' => 'cpa', 'Cpa.g.c36520.1' => 'cpa', 'Cpa.g.c45626' => 'cpa', 'Cpa.g.sc121.17' => 'cpa', 'Cpa.g.sc13.22' => 'cpa', 'Cpa.g.sc87.88' => 'cpa', 'Cre06.g261800' => 'cre', 'CsaV3_1G014500' => 'csa', 'CsaV3_1G014510' => 'csa', 'CsaV3_2G034880' => 'csa', 'CsaV3_6G014760' => 'csa', 'CsaV3_6G021500' => 'csa', 'CsaV3_6G048980' => 'csa', 'CSS0002511' => 'camsi', 'CSS0007556' => 'camsi', 'CSS0008532' => 'camsi', 'CSS0009709' => 'camsi', 'CSS0010486' => 'camsi', 'CSS0016768' => 'camsi', 'CSS0023512' => 'camsi', 'CSS0025341' => 'camsi', 'CSS0027999' => 'camsi', 'CSS0028944' => 'camsi', 'CSS0032292' => 'camsi', 'CSS0032464' => 'camsi', 'CSS0037153' => 'camsi', 'CSS0039256' => 'camsi', 'CSS0048392' => 'camsi', 'CSS0050458' => 'camsi', 'DCAR_004224' => 'dca', 'DCAR_006147' => 'dca', 'DCAR_006465' => 'dca', 'DCAR_008159' => 'dca', 'DCAR_012164' => 'dca', 'DCAR_019764' => 'dca', 'Dinv05418' => 'din', 'Dinv10839' => 'din', 'Dinv12521' => 'din', 'Dinv13900' => 'din', 'Dinv29426' => 'din', 'Duzib150G0263' => 'dzi', 'Duzib168G1178' => 'dzi', 'Duzib168G1924' => 'dzi', 'Duzib170G0299' => 'dzi', 'Duzib170G0813' => 'dzi', 'Duzib235G1128' => 'dzi', 'Duzib248G1060' => 'dzi', 'ECA232G1910' => 'eca', 'ECA233G4621' => 'eca', 'ECA238G1216' => 'eca', 'ECA238G1784' => 'eca', 'ECA248G1242' => 'eca', 'EL10Ac8g20071' => 'bvu', 'EL10Ac9g21086' => 'bvu', 'EL10Ac9g22407' => 'bvu', 'EL10Ac9g22412' => 'bvu', 'Eucgr.A01119' => 'egr', 'Eucgr.E04043' => 'egr', 'Eucgr.J00428' => 'egr', 'Eucgr.J00958' => 'egr', 'FAN11G3091' => 'fan', 'FAN11G3651' => 'fan', 'FAN16G2566' => 'fan', 'FAN21G3155' => 'fan', 'FAN21G3400' => 'fan', 'FAN21G3543' => 'fan', 'FAN25G0234' => 'fan', 'FAN25G1422' => 'fan', 'FAN25G3392' => 'fan', 'FvH4_3g01940' => 'fve', 'FvH4_3g29870' => 'fve', 'FvH4_3g33680' => 'fve', 'Glyma.09G004200' => 'gma', 'Glyma.11G151288' => 'gma', 'Glyma.11G189100' => 'gma', 'Glyma.12G072500' => 'gma', 'Glyma.12G085500' => 'gma', 'Glyma.12G181800' => 'gma', 'Glyma.12G193000' => 'gma', 'Glyma.13G309300' => 'gma', 'Glyma.13G319000' => 'gma', 'Glyma.17G012600' => 'gma', 'Gohir.A06G148600' => 'ghi', 'Gohir.A07G115800' => 'ghi', 'Gohir.A08G003600' => 'ghi', 'Gohir.A09G093300' => 'ghi', 'Gohir.A09G105400' => 'ghi', 'Gohir.A09G105500' => 'ghi', 'Gohir.D06G154600' => 'ghi', 'Gohir.D07G120200' => 'ghi', 'Gohir.D08G013900' => 'ghi', 'Gohir.D09G093100' => 'ghi', 'Gohir.D09G102200' => 'ghi', 'Gohir.D09G102300' => 'ghi', 'Gorai.001G129400' => 'gra', 'Gorai.004G008200' => 'gra', 'Gorai.006G109800' => 'gra', 'Gorai.006G119500' => 'gra', 'Gorai.006G121300' => 'gra', 'Gorai.010G180700' => 'gra', 'GSVIVG01012716001' => 'vvi', 'GSVIVG01025118001' => 'vvi', 'GSVIVG01030439001' => 'vvi', 'GSVIVG01031397001' => 'vvi', 'HanXRQChr01g0004201' => 'han', 'HanXRQChr02g0054941' => 'han', 'HanXRQChr05g0141811' => 'han', 'HanXRQChr07g0197751' => 'han', 'HanXRQChr11g0346691' => 'han', 'HanXRQChr13g0396971' => 'han', 'HanXRQChr14g0432951' => 'han', 'HanXRQChr14g0452001' => 'han', 'HanXRQChr15g0496681' => 'han', 'HanXRQChr17g0557491' => 'han', 'HanXRQChr17g0557501' => 'han', 'Haze_06809' => 'cav', 'Haze_12852' => 'cav', 'Haze_15850' => 'cav', 'Haze_23446' => 'cav', 'Haze_23942' => 'cav', 'Haze_23943' => 'cav', 'Hma1.2p1_0091F.1_g046450' => 'hma', 'Hma1.2p1_0128F.1_g059910' => 'hma', 'Hma1.2p1_0249F.1_g102260' => 'hma', 'Hma1.2p1_0453F.1_g156190' => 'hma', 'Hma1.2p1_0695F.1_g204380' => 'hma', 'Hma1.2p1_0749F.1_g212650' => 'hma', 'Hma1.2p1_2156F.1_g315420' => 'hma', 'Hma1.2p1_2686F.1_g326940' => 'hma', 'HPP92_006428' => 'vpl', 'HPP92_012069' => 'vpl', 'HPP92_014129' => 'vpl', 'HPP92_014133' => 'vpl', 'HPP92_017315' => 'vpl', 'HPP92_026445' => 'vpl', 'HPP92_026446' => 'vpl', 'Hund00774' => 'sun', 'Hund07682' => 'sun', 'Hund21413' => 'sun', 'Hund23462' => 'sun', 'Hund23463' => 'sun', 'Lalb_Chr03g0027911' => 'lal', 'Lalb_Chr13g0304271' => 'lal', 'Lalb_Chr19g0137471' => 'lal', 'Lalb_Chr22g0350651' => 'lal', 'Lalb_Chr24g0395151' => 'lal', 'Lj1A1231T40' => 'lonja', 'Lj1A221T48' => 'lonja', 'Lj1C924T12' => 'lonja', 'Lj2C993G6' => 'lonja', 'Lj3g0005790' => 'lja', 'Lj3g0015432' => 'lja', 'Lj3g0017722' => 'lja', 'Lj3g0018497' => 'lja', 'Lj4g0025071' => 'lja', 'Lsat_1_v5_gn_1_129680' => 'lsa', 'Lsat_1_v5_gn_2_25321' => 'lsa', 'Lsat_1_v5_gn_2_95461' => 'lsa', 'Lsat_1_v5_gn_4_159620' => 'lsa', 'Lsat_1_v5_gn_6_41301' => 'lsa', 'Lsat_1_v5_gn_6_74660' => 'lsa', 'Lsat_1_v5_gn_7_11520' => 'lsa', 'Lsat_1_v5_gn_9_67680' => 'lsa', 'Manes.04G008300' => 'mes', 'Manes.04G008400' => 'mes', 'Manes.04G026500' => 'mes', 'Manes.10G135300' => 'mes', 'Manes.11G157300' => 'mes', 'Manes.12G074000' => 'mes', 'Manes.16G006200' => 'mes', 'Manes.17G026400' => 'mes', 'Mapoly0024s0086' => 'mpo', 'Mapoly0024s0087' => 'mpo', 'Mapoly0071s0057' => 'mpo', 'Mapoly0204s0012' => 'mpo', 'MBI04_g37681_MAGBIO' => 'mbi', 'MBI05_g17779_MAGBIO' => 'mbi', 'MBI12_g31184_MAGBIO' => 'mbi', 'MBI17_g11083_MAGBIO' => 'mbi', 'MBI18_g03883_MAGBIO' => 'mbi', 'MBI18_g28940_MAGBIO' => 'mbi', 'MCO01G690' => 'mco', 'MD03G1109900' => 'mdo', 'MD03G1134800' => 'mdo', 'MD05G1348000' => 'mdo', 'MD10G1322400' => 'mdo', 'MD11G1123300' => 'mdo', 'MD11G1157600' => 'mdo', 'Medtr2g084875' => 'mtr', 'Medtr2g088130' => 'mtr', 'Medtr4g055310' => 'mtr', 'Medtr4g061070' => 'mtr', 'Medtr4g132250' => 'mtr', 'MELO3C004795.2' => 'cme', 'MELO3C004797.2' => 'cme', 'MELO3C007396.2' => 'cme', 'MELO3C019277.2' => 'cme', 'MELO3C021449.2' => 'cme', 'MELO3C025736.2' => 'cme', 'Migut.D02175' => 'egut', 'Migut.H01573' => 'egut', 'Migut.M01327' => 'egut', 'Migut.N02513' => 'egut', 'MSTRG.14638' => 'ama', 'MSTRG.18632' => 'ama', 'MSTRG.7203' => 'ama', 'Nitab4.5_0000533g0140' => 'nta', 'Nitab4.5_0000888g0150' => 'nta', 'Nitab4.5_0001453g0040' => 'nta', 'Nitab4.5_0002827g0090' => 'nta', 'Nitab4.5_0003082g0040' => 'nta', 'Nitab4.5_0007799g0040' => 'nta', 'Nitab4.5_0008983g0010' => 'nta', 'Nitab4.5_0009017g0020' => 'nta', 'Nn1g02132' => 'nnu', 'Nn1g03492' => 'nnu', 'Nn1g03493' => 'nnu', 'Nn1g03494' => 'nnu', 'Nn1g07164' => 'nnu', 'Nn1g07291' => 'nnu', 'Nn2g10655' => 'nnu', 'Nn2g11652' => 'nnu', 'Nn2g14008' => 'nnu', 'Nn3g17476' => 'nnu', 'Nn3g17477' => 'nnu', 'Nn4g22370' => 'nnu', 'Nn4g25255' => 'nnu', 'Nn5g27755' => 'nnu', 'Nn6g34260' => 'nnu', 'Nn6g35041' => 'nnu', 'Oeu005924.1' => 'oeu', 'Oeu008383.1' => 'oeu', 'Oeu014928.1' => 'oeu', 'Oeu019889.1' => 'oeu', 'Oeu022271.1' => 'oeu', 'Oeu025271.1' => 'oeu', 'Oeu036302.1' => 'oeu', 'Oeu044100.1' => 'oeu', 'Os01g0528300' => 'osa', 'Os03g0286200' => 'osa', 'Os04g0406600' => 'osa', 'Os07g0512000' => 'osa', 'Os07g0694600' => 'osa', 'Os08g0411000' => 'osa', 'Os09g0565700' => 'osa', 'Os09g0566050' => 'osa', 'Os10g0523700' => 'osa', 'Peaxi162Scf00002g00514' => 'pax', 'Peaxi162Scf00047g01817' => 'pax', 'Peaxi162Scf00114g00001' => 'pax', 'Peaxi162Scf00147g00613' => 'pax', 'Peaxi162Scf00389g00425' => 'pax', 'PGR042G1139' => 'pgr', 'PGR042G3273' => 'pgr', 'PGR102G2180' => 'pgr', 'PGR119G0234' => 'pgr', 'PGR119G0668' => 'pgr', 'PGSC0003DMG400007122' => 'stu', 'PGSC0003DMG400016478' => 'stu', 'PGSC0003DMG400025374' => 'stu', 'PGSC0003DMG400026536' => 'stu', 'Phvul.003G079600' => 'pvu', 'Phvul.005G115600' => 'pvu', 'Phvul.005G127100' => 'pvu', 'Phvul.006G149500' => 'pvu', 'Phvul.006G149600' => 'pvu', 'Phvul.011G071800' => 'pvu', 'Phvul.011G090400' => 'pvu', 'Potri.004G013400' => 'ptr', 'Potri.004G188100' => 'ptr', 'Potri.008G195500' => 'ptr', 'Potri.009G148800' => 'ptr', 'Potri.011G004700' => 'ptr', 'Pp3c17_22810' => 'ppa', 'Pp3c18_4480' => 'ppa', 'Pp3c19_13030' => 'ppa', 'Pp3c1_33620' => 'ppa', 'Pp3c2_9380' => 'ppa', 'PRCOL_00001023' => 'pco', 'Prupe.3G216300' => 'ppe', 'Prupe.4G019500' => 'ppe', 'Prupe.6G092500' => 'ppe', 'Prupe.6G119200' => 'ppe', 'Psat0s1945g0080' => 'psa', 'Psat0s4167g0040' => 'psa', 'Psat1g185800' => 'psa', 'Psat4g006440' => 'psa', 'Psat4g006480' => 'psa', 'Psat4g168120' => 'psa', 'Psat5g255680' => 'psa', 'Psat5g261760' => 'psa', 'Psat7g222120' => 'psa', 'PSO063G7252' => 'pso', 'PSO170G4778' => 'pso', 'PSO210G2249' => 'pso', 'PSO339G2411' => 'pso', 'PSO339G2457' => 'pso', 'PSO339G2854' => 'pso', 'PSO339G4288' => 'pso', 'PSO339G4615' => 'pso', 'PSO384G2796' => 'pso', 'PSO384G2940' => 'pso', 'PSO384G4227' => 'pso', 'PSO478G1425' => 'pso', 'PSO541G3863' => 'pso', 'PSO675G0507' => 'pso', 'PSO782G0338' => 'pso', 'PSO832G0644' => 'pso', 'QL01p013664' => 'qlo', 'QL01p036598' => 'qlo', 'QL05p072984' => 'qlo', 'QL08p005768' => 'qlo', 'QL08p032743' => 'qlo', 'QL93p0073_0439' => 'qlo', 'QL93p0073_0444' => 'qlo', 'RcHm_v2.0_Chr5g0002851' => 'rch', 'RcHm_v2.0_Chr5g0055201' => 'rch', 'RcHm_v2.0_Chr5g0061191' => 'rch', 'RcHm_v2.0_Chr7g0203231' => 'rch', 'Rhsim01G0208100' => 'rsi', 'Rhsim01G0208200' => 'rsi', 'Rhsim02G0106500' => 'rsi', 'Rhsim03G0107900' => 'rsi', 'Rhsim06G0163400' => 'rsi', 'Rhsim13G0105200' => 'rsi', 'Sabra04G0006300' => 'sbr', 'Sabra04G0127000' => 'sbr', 'Sabra08G0148700' => 'sbr', 'Sabra09G0117400' => 'sbr', 'SalBow1G3326' => 'sbo', 'SalBow3G3228' => 'sbo', 'SalBow6G1634' => 'sbo', 'SalBow6G3603' => 'sbo', 'SalBow6G5266' => 'sbo', 'SalBow7G2265' => 'sbo', 'SalBow8G0850' => 'sbo', 'SalBow8G2592' => 'sbo', 'Sc05g0009240' => 'sci', 'Sc12g0002300' => 'sci', 'Sc21g0000100' => 'sci', 'Sc21g0004720' => 'sci', 'Sed0002949' => 'sed', 'Sed0004114' => 'sed', 'Sed0004306' => 'sed', 'Sed0006172' => 'sed', 'Sed0008413' => 'sed', 'Sed0013809' => 'sed', 'Sed0019556' => 'sed', 'SEGI_03570' => 'sgi', 'SEGI_07859' => 'sgi', 'SEGI_15042' => 'sgi', 'SEGI_16263' => 'sgi', 'SEGI_16552' => 'sgi', 'SEGI_24331' => 'sgi', 'SEGI_27316' => 'sgi', 'SEGI_29521' => 'sgi', 'SEGI_41342' => 'sgi', 'SGA_v2.0_scaffold27G11617' => 'sas', 'SGA_v2.0_scaffold316G48428' => 'sas', 'SGA_v2.0_scaffold49G18261' => 'sas', 'SGA_v2.0_scaffold7G03831' => 'sas', 'SGA_v2.0_scaffold93G28359' => 'sas', 'SHI02210' => 'shi', 'SHI06028' => 'shi', 'SHI06321' => 'shi', 'SMO111G0012' => 'smo', 'SMO228G0080' => 'smo', 'SMO356G0756' => 'smo', 'Solyc02g080620.3' => 'sly', 'Solyc06g074530.1' => 'sly', 'Solyc11g066890.1' => 'sly', 'Solyc11g072520.3' => 'sly', 'Sopen02g025330' => 'spe', 'Sopen06g031000' => 'spe', 'Sopen09g008240' => 'spe', 'Sopen09g025210' => 'spe', 'Sopen11g026600' => 'spe', 'Sopen11g030170' => 'spe', 'Sp1g10420' => 'spa', 'Sp3g06570' => 'spa', 'Sp4g10660' => 'spa', 'Sp5g16460' => 'spa', 'Sp6g22710' => 'spa', 'TAR365G0112' => 'tar', 'TAR369G0717' => 'tar', 'TAR374G0976' => 'tar', 'TAR623G1128' => 'tar', 'TAR626G1937' => 'tar', 'TAR627G0123' => 'tar', 'TAR628G0305' => 'tar', 'TAR636G1176' => 'tar', 'TAR636G2442' => 'tar', 'THA.LOC104800556' => 'tha', 'THA.LOC104809501' => 'tha', 'THA.LOC104815126' => 'tha', 'THA.LOC104815732' => 'tha', 'THA.LOC104823528' => 'tha', 'Thecc.02G365600' => 'tca', 'Thecc.06G222300' => 'tca', 'Thecc.09G261800' => 'tca', 'Thecc.09G291400' => 'tca', 'Thhalv10003028m.g' => 'esa', 'Thhalv10007886m.g' => 'esa', 'Thhalv10016085m.g' => 'esa', 'Thhalv10016681m.g' => 'esa', 'Thhalv10020951m.g' => 'esa', 'TPR.G15598' => 'tpr', 'TPR.G29305' => 'tpr', 'TPR.G32395' => 'tpr', 'TPR.G36998' => 'tpr', 'TPR.G4227' => 'tpr', 'TWI18G1433' => 'twi', 'TWI31G0755' => 'twi', 'TWI38G0912' => 'twi', 'TWI75G1097' => 'twi', 'TWI75G1619' => 'twi', 'TWI79G1336' => 'twi', 'unitig_0.g943' => 'ugi', 'unitig_0.g944' => 'ugi', 'unitig_22.g6646' => 'ugi', 'unitig_37.g12681' => 'ugi', 'unitig_8.g3290' => 'ugi', 'vmacro03278' => 'vma', 'vmacro12197' => 'vma', 'vmacro14478' => 'vma', 'vmacro15787' => 'vma', 'vmacro15789' => 'vma', 'vmacro15790' => 'vma', 'vmacro15806' => 'vma', 'vmacro22907' => 'vma', 'vmacro22908' => 'vma', 'vmacro22909' => 'vma', 'vmacro23108' => 'vma', 'VMungo0540G0540' => 'vmu', 'VMungo0540G2468' => 'vmu', 'VMungo1080G0390' => 'vmu', 'VMungo1080G1165' => 'vmu', 'VMungo1127G0170' => 'vmu', 'VMungo1127G2099' => 'vmu', 'VMungo1215G3013' => 'vmu', 'Zm00001eb013110' => 'zma', 'Zm00001eb084260' => 'zma', 'Zm00001eb096110' => 'zma', 'Zm00001eb217510' => 'zma', 'Zm00001eb322550' => 'zma', 'Zm00001eb390770' => 'zma', 'Zm00001eb397170' => 'zma', 'Zm00001eb404610' => 'zma', 'Zm00001eb421790' => 'zma' ) $gf_id = 'HOM05D000911' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000911' ) $data_identifier = 'HOM05D000911' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 16, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 5, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 6, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 8, 'nnu' => (int) 16, 'oeu' => (int) 8, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 5, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 16, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421790' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000911', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27780' => 'bna', 'A03p35380' => 'bna', 'A04p21160' => 'bna', 'A05p40570' => 'bna', 'A06p26900' => 'bna', 'A08p33230' => 'bna', 'A09p65960' => 'bna', 'A10p18290' => 'bna', 'Aa31LG1G12990' => 'aar', 'Aa31LG1G2980' => 'aar', 'Aa31LG4G14320' => 'aar', 'Aa31LG7G11800' => 'aar', 'Aa31sc36G50' => 'aar', 'Aa31sc36G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3721' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5459' => 'aag', 'Actinidia03028' => 'ach', 'Actinidia03753' => 'ach', 'Actinidia04187' => 'ach', 'Actinidia05509' => 'ach', 'Actinidia24180' => 'ach', 'Actinidia26906' => 'ach', 'Actinidia37097' => 'ach', 'Actinidia38249' => 'ach', 'Ah.01g003470' => 'amhyb', 'Ah.01g004580' => 'amhyb', 'Ah.01g014850' => 'amhyb', 'Ah.01g016830' => 'amhyb', 'Ah.14g088000' => 'amhyb', 'AL1G22980' => 'aly', 'AL3G18990' => 'aly', 'AL4G22440' => 'aly', 'AL4G33180' => 'aly', 'AL5G22920' => 'aly', 'AL6G33660' => 'aly', 'AL8G20720' => 'aly', 'Aqoxy1G00935' => 'aox', 'Aqoxy1G02094' => 'aox', 'Aqoxy2G01239' => 'aox', 'Aqoxy4G01870' => 'aox', 'Aqoxy7G00450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.36ZVTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71EM27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5D6C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH3WRE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3NCM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RIM768' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YB5YRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z36GDV' => 'arhy', 'AT1G08250' => 'ath', 'AT1G11790' => 'ath', 'AT2G27820' => 'ath', 'AT3G07630' => 'ath', 'AT3G44720' => 'ath', 'AT5G22630' => 'ath', 'ATR0693G304' => 'atr', 'ATR0794G109' => 'atr', 'ATR0820G120' => 'atr', 'ATR1159G064' => 'atr', 'Atru.chr10.2239' => 'acertr', 'Atru.chr3.3371' => 'acertr', 'Atru.chr6.3202' => 'acertr', 'AUR62006499' => 'cqu', 'AUR62012718' => 'cqu', 'AUR62021938' => 'cqu', 'AUR62023932' => 'cqu', 'AUR62025034' => 'cqu', 'AUR62025035' => 'cqu', 'AUR62038307' => 'cqu', 'AUR62043466' => 'cqu', 'BcaB02g10748' => 'bca', 'BcaB03g13231' => 'bca', 'BcaB03g14689' => 'bca', 'BcaB05g22716' => 'bca', 'BcaB06g28172' => 'bca', 'BcaB08g36413' => 'bca', 'BcaC01g02186' => 'bca', 'BcaC01g04272' => 'bca', 'BcaC02g08080' => 'bca', 'BcaC02g08227' => 'bca', 'BcaC03g13901' => 'bca', 'BcaC04g19593' => 'bca', 'BcaC04g20874' => 'bca', 'BcaC05g29557' => 'bca', 'BcaC06g35505' => 'bca', 'BcaC07g41954' => 'bca', 'BcaC07g41955' => 'bca', 'BcaC07g41956' => 'bca', 'BcaC07g42519' => 'bca', 'BcaC07g42520' => 'bca', 'BcaC07g42523' => 'bca', 'BcaC07g42524' => 'bca', 'BcaC07g42525' => 'bca', 'BcaC08g47480' => 'bca', 'BcaC08g47481' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00530' => 'bna', 'BolC2t07178H' => 'bol', 'BolC3t16567H' => 'bol', 'BolC4t27234H' => 'bol', 'BolC5t29728H' => 'bol', 'BolC5t34622H' => 'bol', 'BolC6t40321H' => 'bol', 'BolC7t42028H' => 'bol', 'BolC8t49125H' => 'bol', 'BolC8t52538H' => 'bol', 'BolC8t52539H' => 'bol', 'BolC9t56681H' => 'bol', 'BolC9t58266H' => 'bol', 'BolSC21t60294H' => 'bol', 'BraA02t05670Z' => 'bra', 'BraA03t12716Z' => 'bra', 'BraA04t17685Z' => 'bra', 'BraA05t22788Z' => 'bra', 'BraA06t24032Z' => 'bra', 'BraA06t25625Z' => 'bra', 'BraA07t27930Z' => 'bra', 'BraA08t35242Z' => 'bra', 'BraA09t38609Z' => 'bra', 'BraA10t43905Z' => 'bra', 'C02p11060' => 'bna', 'C03p42990' => 'bna', 'C03p67310' => 'bna', 'C04p56990' => 'bna', 'C04p58660' => 'bna', 'C05p09890' => 'bna', 'C05p59680' => 'bna', 'C06p19830' => 'bna', 'C06p53040' => 'bna', 'C07p15230' => 'bna', 'C08p50070' => 'bna', 'C08p50090' => 'bna', 'C09p38330' => 'bna', 'C09p53940' => 'bna', 'CAN.G1014.1' => 'can', 'CAN.G644.30' => 'can', 'CAN.G84.47' => 'can', 'CAN.G919.8' => 'can', 'CANSAT54G0113' => 'cansat', 'CANSAT54G1286' => 'cansat', 'CANSAT64G1020' => 'cansat', 'CARHR008080' => 'chi', 'CARHR008090' => 'chi', 'CARHR012130' => 'chi', 'CARHR038390' => 'chi', 'CARHR082330' => 'chi', 'CARHR120520' => 'chi', 'CARHR151470' => 'chi', 'CARHR190950' => 'chi', 'Carub.0001s0760' => 'cru', 'Carub.0001s1146' => 'cru', 'Carub.0003s0721' => 'cru', 'Carub.0004s0858' => 'cru', 'Carub.0005s1040' => 'cru', 'Carub.0006s2035' => 'cru', 'Carub.0015s0005' => 'cru', 'Ca_01607_v3' => 'car', 'Ca_01677_v3' => 'car', 'Ca_06087_v3' => 'car', 'Ca_19238_v3' => 'car', 'Ca_19373_v3' => 'car', 'Ca_21079_v3' => 'car', 'CBR_g54016' => 'cbr', 'CBR_g54018' => 'cbr', 'CBR_g54020' => 'cbr', 'Cc01_g09780' => 'ccan', 'Cc01_g11680' => 'ccan', 'Cc02_g15610' => 'ccan', 'Cc05_g04350' => 'ccan', 'Cc09_g01580' => 'ccan', 'CDE01G0795' => 'cde', 'CDE02G2024' => 'cde', 'CDE02G2260' => 'cde', 'CDE02G4561' => 'cde', 'CDE05G2733' => 'cde', 'CDE05G3422' => 'cde', 'CDE06G2003' => 'cde', 'CDE08G0576' => 'cde', 'CDE09G0048' => 'cde', 'CDE11G0805' => 'cde', 'Cfa003644' => 'cfa', 'Cfa006290' => 'cfa', 'Cfa010080' => 'cfa', 'Cfa011376' => 'cfa', 'Cfa011576' => 'cfa', 'Cfa011577' => 'cfa', 'Cfa014389' => 'cfa', 'Ciclev10006044m.g' => 'ccl', 'Ciclev10006954m.g' => 'ccl', 'Ciclev10015131m.g' => 'ccl', 'Ciclev10015580m.g' => 'ccl', 'Ciclev10028359m.g' => 'ccl', 'Ciclev10028573m.g' => 'ccl', 'CiPaw.03G159300' => 'cil', 'CiPaw.04G115100' => 'cil', 'CiPaw.09G092800' => 'cil', 'CiPaw.10G071800' => 'cil', 'CiPaw.13G105800' => 'cil', 'CiPaw.13G141000' => 'cil', 'CiPaw.14G103400' => 'cil', 'ClCG01G012700' => 'cla', 'ClCG01G012720' => 'cla', 'ClCG01G021920' => 'cla', 'ClCG02G008870' => 'cla', 'ClCG02G020840' => 'cla', 'ClCG02G021930' => 'cla', 'COL.COLO4_19302' => 'col', 'COL.COLO4_25262' => 'col', 'COL.COLO4_31788' => 'col', 'Cpa.g.c34684' => 'cpa', 'Cpa.g.c36520.1' => 'cpa', 'Cpa.g.c45626' => 'cpa', 'Cpa.g.sc121.17' => 'cpa', 'Cpa.g.sc13.22' => 'cpa', 'Cpa.g.sc87.88' => 'cpa', 'Cre06.g261800' => 'cre', 'CsaV3_1G014500' => 'csa', 'CsaV3_1G014510' => 'csa', 'CsaV3_2G034880' => 'csa', 'CsaV3_6G014760' => 'csa', 'CsaV3_6G021500' => 'csa', 'CsaV3_6G048980' => 'csa', 'CSS0002511' => 'camsi', 'CSS0007556' => 'camsi', 'CSS0008532' => 'camsi', 'CSS0009709' => 'camsi', 'CSS0010486' => 'camsi', 'CSS0016768' => 'camsi', 'CSS0023512' => 'camsi', 'CSS0025341' => 'camsi', 'CSS0027999' => 'camsi', 'CSS0028944' => 'camsi', 'CSS0032292' => 'camsi', 'CSS0032464' => 'camsi', 'CSS0037153' => 'camsi', 'CSS0039256' => 'camsi', 'CSS0048392' => 'camsi', 'CSS0050458' => 'camsi', 'DCAR_004224' => 'dca', 'DCAR_006147' => 'dca', 'DCAR_006465' => 'dca', 'DCAR_008159' => 'dca', 'DCAR_012164' => 'dca', 'DCAR_019764' => 'dca', 'Dinv05418' => 'din', 'Dinv10839' => 'din', 'Dinv12521' => 'din', 'Dinv13900' => 'din', 'Dinv29426' => 'din', 'Duzib150G0263' => 'dzi', 'Duzib168G1178' => 'dzi', 'Duzib168G1924' => 'dzi', 'Duzib170G0299' => 'dzi', 'Duzib170G0813' => 'dzi', 'Duzib235G1128' => 'dzi', 'Duzib248G1060' => 'dzi', 'ECA232G1910' => 'eca', 'ECA233G4621' => 'eca', 'ECA238G1216' => 'eca', 'ECA238G1784' => 'eca', 'ECA248G1242' => 'eca', 'EL10Ac8g20071' => 'bvu', 'EL10Ac9g21086' => 'bvu', 'EL10Ac9g22407' => 'bvu', 'EL10Ac9g22412' => 'bvu', 'Eucgr.A01119' => 'egr', 'Eucgr.E04043' => 'egr', 'Eucgr.J00428' => 'egr', 'Eucgr.J00958' => 'egr', 'FAN11G3091' => 'fan', 'FAN11G3651' => 'fan', 'FAN16G2566' => 'fan', 'FAN21G3155' => 'fan', 'FAN21G3400' => 'fan', 'FAN21G3543' => 'fan', 'FAN25G0234' => 'fan', 'FAN25G1422' => 'fan', 'FAN25G3392' => 'fan', 'FvH4_3g01940' => 'fve', 'FvH4_3g29870' => 'fve', 'FvH4_3g33680' => 'fve', 'Glyma.09G004200' => 'gma', 'Glyma.11G151288' => 'gma', 'Glyma.11G189100' => 'gma', 'Glyma.12G072500' => 'gma', 'Glyma.12G085500' => 'gma', 'Glyma.12G181800' => 'gma', 'Glyma.12G193000' => 'gma', 'Glyma.13G309300' => 'gma', 'Glyma.13G319000' => 'gma', 'Glyma.17G012600' => 'gma', 'Gohir.A06G148600' => 'ghi', 'Gohir.A07G115800' => 'ghi', 'Gohir.A08G003600' => 'ghi', 'Gohir.A09G093300' => 'ghi', 'Gohir.A09G105400' => 'ghi', 'Gohir.A09G105500' => 'ghi', 'Gohir.D06G154600' => 'ghi', 'Gohir.D07G120200' => 'ghi', 'Gohir.D08G013900' => 'ghi', 'Gohir.D09G093100' => 'ghi', 'Gohir.D09G102200' => 'ghi', 'Gohir.D09G102300' => 'ghi', 'Gorai.001G129400' => 'gra', 'Gorai.004G008200' => 'gra', 'Gorai.006G109800' => 'gra', 'Gorai.006G119500' => 'gra', 'Gorai.006G121300' => 'gra', 'Gorai.010G180700' => 'gra', 'GSVIVG01012716001' => 'vvi', 'GSVIVG01025118001' => 'vvi', 'GSVIVG01030439001' => 'vvi', 'GSVIVG01031397001' => 'vvi', 'HanXRQChr01g0004201' => 'han', 'HanXRQChr02g0054941' => 'han', 'HanXRQChr05g0141811' => 'han', 'HanXRQChr07g0197751' => 'han', 'HanXRQChr11g0346691' => 'han', 'HanXRQChr13g0396971' => 'han', 'HanXRQChr14g0432951' => 'han', 'HanXRQChr14g0452001' => 'han', 'HanXRQChr15g0496681' => 'han', 'HanXRQChr17g0557491' => 'han', 'HanXRQChr17g0557501' => 'han', 'Haze_06809' => 'cav', 'Haze_12852' => 'cav', 'Haze_15850' => 'cav', 'Haze_23446' => 'cav', 'Haze_23942' => 'cav', 'Haze_23943' => 'cav', 'Hma1.2p1_0091F.1_g046450' => 'hma', 'Hma1.2p1_0128F.1_g059910' => 'hma', 'Hma1.2p1_0249F.1_g102260' => 'hma', 'Hma1.2p1_0453F.1_g156190' => 'hma', 'Hma1.2p1_0695F.1_g204380' => 'hma', 'Hma1.2p1_0749F.1_g212650' => 'hma', 'Hma1.2p1_2156F.1_g315420' => 'hma', 'Hma1.2p1_2686F.1_g326940' => 'hma', 'HPP92_006428' => 'vpl', 'HPP92_012069' => 'vpl', 'HPP92_014129' => 'vpl', 'HPP92_014133' => 'vpl', 'HPP92_017315' => 'vpl', 'HPP92_026445' => 'vpl', 'HPP92_026446' => 'vpl', 'Hund00774' => 'sun', 'Hund07682' => 'sun', 'Hund21413' => 'sun', 'Hund23462' => 'sun', 'Hund23463' => 'sun', 'Lalb_Chr03g0027911' => 'lal', 'Lalb_Chr13g0304271' => 'lal', 'Lalb_Chr19g0137471' => 'lal', 'Lalb_Chr22g0350651' => 'lal', 'Lalb_Chr24g0395151' => 'lal', 'Lj1A1231T40' => 'lonja', 'Lj1A221T48' => 'lonja', 'Lj1C924T12' => 'lonja', 'Lj2C993G6' => 'lonja', 'Lj3g0005790' => 'lja', 'Lj3g0015432' => 'lja', 'Lj3g0017722' => 'lja', 'Lj3g0018497' => 'lja', 'Lj4g0025071' => 'lja', 'Lsat_1_v5_gn_1_129680' => 'lsa', 'Lsat_1_v5_gn_2_25321' => 'lsa', 'Lsat_1_v5_gn_2_95461' => 'lsa', 'Lsat_1_v5_gn_4_159620' => 'lsa', 'Lsat_1_v5_gn_6_41301' => 'lsa', 'Lsat_1_v5_gn_6_74660' => 'lsa', 'Lsat_1_v5_gn_7_11520' => 'lsa', 'Lsat_1_v5_gn_9_67680' => 'lsa', 'Manes.04G008300' => 'mes', 'Manes.04G008400' => 'mes', 'Manes.04G026500' => 'mes', 'Manes.10G135300' => 'mes', 'Manes.11G157300' => 'mes', 'Manes.12G074000' => 'mes', 'Manes.16G006200' => 'mes', 'Manes.17G026400' => 'mes', 'Mapoly0024s0086' => 'mpo', 'Mapoly0024s0087' => 'mpo', 'Mapoly0071s0057' => 'mpo', 'Mapoly0204s0012' => 'mpo', 'MBI04_g37681_MAGBIO' => 'mbi', 'MBI05_g17779_MAGBIO' => 'mbi', 'MBI12_g31184_MAGBIO' => 'mbi', 'MBI17_g11083_MAGBIO' => 'mbi', 'MBI18_g03883_MAGBIO' => 'mbi', 'MBI18_g28940_MAGBIO' => 'mbi', 'MCO01G690' => 'mco', 'MD03G1109900' => 'mdo', 'MD03G1134800' => 'mdo', 'MD05G1348000' => 'mdo', 'MD10G1322400' => 'mdo', 'MD11G1123300' => 'mdo', 'MD11G1157600' => 'mdo', 'Medtr2g084875' => 'mtr', 'Medtr2g088130' => 'mtr', 'Medtr4g055310' => 'mtr', 'Medtr4g061070' => 'mtr', 'Medtr4g132250' => 'mtr', 'MELO3C004795.2' => 'cme', 'MELO3C004797.2' => 'cme', 'MELO3C007396.2' => 'cme', 'MELO3C019277.2' => 'cme', 'MELO3C021449.2' => 'cme', 'MELO3C025736.2' => 'cme', 'Migut.D02175' => 'egut', 'Migut.H01573' => 'egut', 'Migut.M01327' => 'egut', 'Migut.N02513' => 'egut', 'MSTRG.14638' => 'ama', 'MSTRG.18632' => 'ama', 'MSTRG.7203' => 'ama', 'Nitab4.5_0000533g0140' => 'nta', 'Nitab4.5_0000888g0150' => 'nta', 'Nitab4.5_0001453g0040' => 'nta', 'Nitab4.5_0002827g0090' => 'nta', 'Nitab4.5_0003082g0040' => 'nta', 'Nitab4.5_0007799g0040' => 'nta', 'Nitab4.5_0008983g0010' => 'nta', 'Nitab4.5_0009017g0020' => 'nta', 'Nn1g02132' => 'nnu', 'Nn1g03492' => 'nnu', 'Nn1g03493' => 'nnu', 'Nn1g03494' => 'nnu', 'Nn1g07164' => 'nnu', 'Nn1g07291' => 'nnu', 'Nn2g10655' => 'nnu', 'Nn2g11652' => 'nnu', 'Nn2g14008' => 'nnu', 'Nn3g17476' => 'nnu', 'Nn3g17477' => 'nnu', 'Nn4g22370' => 'nnu', 'Nn4g25255' => 'nnu', 'Nn5g27755' => 'nnu', 'Nn6g34260' => 'nnu', 'Nn6g35041' => 'nnu', 'Oeu005924.1' => 'oeu', 'Oeu008383.1' => 'oeu', 'Oeu014928.1' => 'oeu', 'Oeu019889.1' => 'oeu', 'Oeu022271.1' => 'oeu', 'Oeu025271.1' => 'oeu', 'Oeu036302.1' => 'oeu', 'Oeu044100.1' => 'oeu', 'Os01g0528300' => 'osa', 'Os03g0286200' => 'osa', 'Os04g0406600' => 'osa', 'Os07g0512000' => 'osa', 'Os07g0694600' => 'osa', 'Os08g0411000' => 'osa', 'Os09g0565700' => 'osa', 'Os09g0566050' => 'osa', 'Os10g0523700' => 'osa', 'Peaxi162Scf00002g00514' => 'pax', 'Peaxi162Scf00047g01817' => 'pax', 'Peaxi162Scf00114g00001' => 'pax', 'Peaxi162Scf00147g00613' => 'pax', 'Peaxi162Scf00389g00425' => 'pax', 'PGR042G1139' => 'pgr', 'PGR042G3273' => 'pgr', 'PGR102G2180' => 'pgr', 'PGR119G0234' => 'pgr', 'PGR119G0668' => 'pgr', 'PGSC0003DMG400007122' => 'stu', 'PGSC0003DMG400016478' => 'stu', 'PGSC0003DMG400025374' => 'stu', 'PGSC0003DMG400026536' => 'stu', 'Phvul.003G079600' => 'pvu', 'Phvul.005G115600' => 'pvu', 'Phvul.005G127100' => 'pvu', 'Phvul.006G149500' => 'pvu', 'Phvul.006G149600' => 'pvu', 'Phvul.011G071800' => 'pvu', 'Phvul.011G090400' => 'pvu', 'Potri.004G013400' => 'ptr', 'Potri.004G188100' => 'ptr', 'Potri.008G195500' => 'ptr', 'Potri.009G148800' => 'ptr', 'Potri.011G004700' => 'ptr', 'Pp3c17_22810' => 'ppa', 'Pp3c18_4480' => 'ppa', 'Pp3c19_13030' => 'ppa', 'Pp3c1_33620' => 'ppa', 'Pp3c2_9380' => 'ppa', 'PRCOL_00001023' => 'pco', 'Prupe.3G216300' => 'ppe', 'Prupe.4G019500' => 'ppe', 'Prupe.6G092500' => 'ppe', 'Prupe.6G119200' => 'ppe', 'Psat0s1945g0080' => 'psa', 'Psat0s4167g0040' => 'psa', 'Psat1g185800' => 'psa', 'Psat4g006440' => 'psa', 'Psat4g006480' => 'psa', 'Psat4g168120' => 'psa', 'Psat5g255680' => 'psa', 'Psat5g261760' => 'psa', 'Psat7g222120' => 'psa', 'PSO063G7252' => 'pso', 'PSO170G4778' => 'pso', 'PSO210G2249' => 'pso', 'PSO339G2411' => 'pso', 'PSO339G2457' => 'pso', 'PSO339G2854' => 'pso', 'PSO339G4288' => 'pso', 'PSO339G4615' => 'pso', 'PSO384G2796' => 'pso', 'PSO384G2940' => 'pso', 'PSO384G4227' => 'pso', 'PSO478G1425' => 'pso', 'PSO541G3863' => 'pso', 'PSO675G0507' => 'pso', 'PSO782G0338' => 'pso', 'PSO832G0644' => 'pso', 'QL01p013664' => 'qlo', 'QL01p036598' => 'qlo', 'QL05p072984' => 'qlo', 'QL08p005768' => 'qlo', 'QL08p032743' => 'qlo', 'QL93p0073_0439' => 'qlo', 'QL93p0073_0444' => 'qlo', 'RcHm_v2.0_Chr5g0002851' => 'rch', 'RcHm_v2.0_Chr5g0055201' => 'rch', 'RcHm_v2.0_Chr5g0061191' => 'rch', 'RcHm_v2.0_Chr7g0203231' => 'rch', 'Rhsim01G0208100' => 'rsi', 'Rhsim01G0208200' => 'rsi', 'Rhsim02G0106500' => 'rsi', 'Rhsim03G0107900' => 'rsi', 'Rhsim06G0163400' => 'rsi', 'Rhsim13G0105200' => 'rsi', 'Sabra04G0006300' => 'sbr', 'Sabra04G0127000' => 'sbr', 'Sabra08G0148700' => 'sbr', 'Sabra09G0117400' => 'sbr', 'SalBow1G3326' => 'sbo', 'SalBow3G3228' => 'sbo', 'SalBow6G1634' => 'sbo', 'SalBow6G3603' => 'sbo', 'SalBow6G5266' => 'sbo', 'SalBow7G2265' => 'sbo', 'SalBow8G0850' => 'sbo', 'SalBow8G2592' => 'sbo', 'Sc05g0009240' => 'sci', 'Sc12g0002300' => 'sci', 'Sc21g0000100' => 'sci', 'Sc21g0004720' => 'sci', 'Sed0002949' => 'sed', 'Sed0004114' => 'sed', 'Sed0004306' => 'sed', 'Sed0006172' => 'sed', 'Sed0008413' => 'sed', 'Sed0013809' => 'sed', 'Sed0019556' => 'sed', 'SEGI_03570' => 'sgi', 'SEGI_07859' => 'sgi', 'SEGI_15042' => 'sgi', 'SEGI_16263' => 'sgi', 'SEGI_16552' => 'sgi', 'SEGI_24331' => 'sgi', 'SEGI_27316' => 'sgi', 'SEGI_29521' => 'sgi', 'SEGI_41342' => 'sgi', 'SGA_v2.0_scaffold27G11617' => 'sas', 'SGA_v2.0_scaffold316G48428' => 'sas', 'SGA_v2.0_scaffold49G18261' => 'sas', 'SGA_v2.0_scaffold7G03831' => 'sas', 'SGA_v2.0_scaffold93G28359' => 'sas', 'SHI02210' => 'shi', 'SHI06028' => 'shi', 'SHI06321' => 'shi', 'SMO111G0012' => 'smo', 'SMO228G0080' => 'smo', 'SMO356G0756' => 'smo', 'Solyc02g080620.3' => 'sly', 'Solyc06g074530.1' => 'sly', 'Solyc11g066890.1' => 'sly', 'Solyc11g072520.3' => 'sly', 'Sopen02g025330' => 'spe', 'Sopen06g031000' => 'spe', 'Sopen09g008240' => 'spe', 'Sopen09g025210' => 'spe', 'Sopen11g026600' => 'spe', 'Sopen11g030170' => 'spe', 'Sp1g10420' => 'spa', 'Sp3g06570' => 'spa', 'Sp4g10660' => 'spa', 'Sp5g16460' => 'spa', 'Sp6g22710' => 'spa', 'TAR365G0112' => 'tar', 'TAR369G0717' => 'tar', 'TAR374G0976' => 'tar', 'TAR623G1128' => 'tar', 'TAR626G1937' => 'tar', 'TAR627G0123' => 'tar', 'TAR628G0305' => 'tar', 'TAR636G1176' => 'tar', 'TAR636G2442' => 'tar', 'THA.LOC104800556' => 'tha', 'THA.LOC104809501' => 'tha', 'THA.LOC104815126' => 'tha', 'THA.LOC104815732' => 'tha', 'THA.LOC104823528' => 'tha', 'Thecc.02G365600' => 'tca', 'Thecc.06G222300' => 'tca', 'Thecc.09G261800' => 'tca', 'Thecc.09G291400' => 'tca', 'Thhalv10003028m.g' => 'esa', 'Thhalv10007886m.g' => 'esa', 'Thhalv10016085m.g' => 'esa', 'Thhalv10016681m.g' => 'esa', 'Thhalv10020951m.g' => 'esa', 'TPR.G15598' => 'tpr', 'TPR.G29305' => 'tpr', 'TPR.G32395' => 'tpr', 'TPR.G36998' => 'tpr', 'TPR.G4227' => 'tpr', 'TWI18G1433' => 'twi', 'TWI31G0755' => 'twi', 'TWI38G0912' => 'twi', 'TWI75G1097' => 'twi', 'TWI75G1619' => 'twi', 'TWI79G1336' => 'twi', 'unitig_0.g943' => 'ugi', 'unitig_0.g944' => 'ugi', 'unitig_22.g6646' => 'ugi', 'unitig_37.g12681' => 'ugi', 'unitig_8.g3290' => 'ugi', 'vmacro03278' => 'vma', 'vmacro12197' => 'vma', 'vmacro14478' => 'vma', 'vmacro15787' => 'vma', 'vmacro15789' => 'vma', 'vmacro15790' => 'vma', 'vmacro15806' => 'vma', 'vmacro22907' => 'vma', 'vmacro22908' => 'vma', 'vmacro22909' => 'vma', 'vmacro23108' => 'vma', 'VMungo0540G0540' => 'vmu', 'VMungo0540G2468' => 'vmu', 'VMungo1080G0390' => 'vmu', 'VMungo1080G1165' => 'vmu', 'VMungo1127G0170' => 'vmu', 'VMungo1127G2099' => 'vmu', 'VMungo1215G3013' => 'vmu', 'Zm00001eb013110' => 'zma', 'Zm00001eb084260' => 'zma', 'Zm00001eb096110' => 'zma', 'Zm00001eb217510' => 'zma', 'Zm00001eb322550' => 'zma', 'Zm00001eb390770' => 'zma', 'Zm00001eb397170' => 'zma', 'Zm00001eb404610' => 'zma', 'Zm00001eb421790' => 'zma' ), 'gf_id' => 'HOM05D000911', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000911' ), 'data_identifier' => 'HOM05D000911', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000911', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27780' => 'bna', 'A03p35380' => 'bna', 'A04p21160' => 'bna', 'A05p40570' => 'bna', 'A06p26900' => 'bna', 'A08p33230' => 'bna', 'A09p65960' => 'bna', 'A10p18290' => 'bna', 'Aa31LG1G12990' => 'aar', 'Aa31LG1G2980' => 'aar', 'Aa31LG4G14320' => 'aar', 'Aa31LG7G11800' => 'aar', 'Aa31sc36G50' => 'aar', 'Aa31sc36G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3721' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5459' => 'aag', 'Actinidia03028' => 'ach', 'Actinidia03753' => 'ach', 'Actinidia04187' => 'ach', 'Actinidia05509' => 'ach', 'Actinidia24180' => 'ach', 'Actinidia26906' => 'ach', 'Actinidia37097' => 'ach', 'Actinidia38249' => 'ach', 'Ah.01g003470' => 'amhyb', 'Ah.01g004580' => 'amhyb', 'Ah.01g014850' => 'amhyb', 'Ah.01g016830' => 'amhyb', 'Ah.14g088000' => 'amhyb', 'AL1G22980' => 'aly', 'AL3G18990' => 'aly', 'AL4G22440' => 'aly', 'AL4G33180' => 'aly', 'AL5G22920' => 'aly', 'AL6G33660' => 'aly', 'AL8G20720' => 'aly', 'Aqoxy1G00935' => 'aox', 'Aqoxy1G02094' => 'aox', 'Aqoxy2G01239' => 'aox', 'Aqoxy4G01870' => 'aox', 'Aqoxy7G00450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.36ZVTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71EM27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5D6C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH3WRE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3NCM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RIM768' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YB5YRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z36GDV' => 'arhy', 'AT1G08250' => 'ath', 'AT1G11790' => 'ath', 'AT2G27820' => 'ath', 'AT3G07630' => 'ath', 'AT3G44720' => 'ath', 'AT5G22630' => 'ath', 'ATR0693G304' => 'atr', 'ATR0794G109' => 'atr', 'ATR0820G120' => 'atr', 'ATR1159G064' => 'atr', 'Atru.chr10.2239' => 'acertr', 'Atru.chr3.3371' => 'acertr', 'Atru.chr6.3202' => 'acertr', 'AUR62006499' => 'cqu', 'AUR62012718' => 'cqu', 'AUR62021938' => 'cqu', 'AUR62023932' => 'cqu', 'AUR62025034' => 'cqu', 'AUR62025035' => 'cqu', 'AUR62038307' => 'cqu', 'AUR62043466' => 'cqu', 'BcaB02g10748' => 'bca', 'BcaB03g13231' => 'bca', 'BcaB03g14689' => 'bca', 'BcaB05g22716' => 'bca', 'BcaB06g28172' => 'bca', 'BcaB08g36413' => 'bca', 'BcaC01g02186' => 'bca', 'BcaC01g04272' => 'bca', 'BcaC02g08080' => 'bca', 'BcaC02g08227' => 'bca', 'BcaC03g13901' => 'bca', 'BcaC04g19593' => 'bca', 'BcaC04g20874' => 'bca', 'BcaC05g29557' => 'bca', 'BcaC06g35505' => 'bca', 'BcaC07g41954' => 'bca', 'BcaC07g41955' => 'bca', 'BcaC07g41956' => 'bca', 'BcaC07g42519' => 'bca', 'BcaC07g42520' => 'bca', 'BcaC07g42523' => 'bca', 'BcaC07g42524' => 'bca', 'BcaC07g42525' => 'bca', 'BcaC08g47480' => 'bca', 'BcaC08g47481' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00530' => 'bna', 'BolC2t07178H' => 'bol', 'BolC3t16567H' => 'bol', 'BolC4t27234H' => 'bol', 'BolC5t29728H' => 'bol', 'BolC5t34622H' => 'bol', 'BolC6t40321H' => 'bol', 'BolC7t42028H' => 'bol', 'BolC8t49125H' => 'bol', 'BolC8t52538H' => 'bol', 'BolC8t52539H' => 'bol', 'BolC9t56681H' => 'bol', 'BolC9t58266H' => 'bol', 'BolSC21t60294H' => 'bol', 'BraA02t05670Z' => 'bra', 'BraA03t12716Z' => 'bra', 'BraA04t17685Z' => 'bra', 'BraA05t22788Z' => 'bra', 'BraA06t24032Z' => 'bra', 'BraA06t25625Z' => 'bra', 'BraA07t27930Z' => 'bra', 'BraA08t35242Z' => 'bra', 'BraA09t38609Z' => 'bra', 'BraA10t43905Z' => 'bra', 'C02p11060' => 'bna', 'C03p42990' => 'bna', 'C03p67310' => 'bna', 'C04p56990' => 'bna', 'C04p58660' => 'bna', 'C05p09890' => 'bna', 'C05p59680' => 'bna', 'C06p19830' => 'bna', 'C06p53040' => 'bna', 'C07p15230' => 'bna', 'C08p50070' => 'bna', 'C08p50090' => 'bna', 'C09p38330' => 'bna', 'C09p53940' => 'bna', 'CAN.G1014.1' => 'can', 'CAN.G644.30' => 'can', 'CAN.G84.47' => 'can', 'CAN.G919.8' => 'can', 'CANSAT54G0113' => 'cansat', 'CANSAT54G1286' => 'cansat', 'CANSAT64G1020' => 'cansat', 'CARHR008080' => 'chi', 'CARHR008090' => 'chi', 'CARHR012130' => 'chi', 'CARHR038390' => 'chi', 'CARHR082330' => 'chi', 'CARHR120520' => 'chi', 'CARHR151470' => 'chi', 'CARHR190950' => 'chi', 'Carub.0001s0760' => 'cru', 'Carub.0001s1146' => 'cru', 'Carub.0003s0721' => 'cru', 'Carub.0004s0858' => 'cru', 'Carub.0005s1040' => 'cru', 'Carub.0006s2035' => 'cru', 'Carub.0015s0005' => 'cru', 'Ca_01607_v3' => 'car', 'Ca_01677_v3' => 'car', 'Ca_06087_v3' => 'car', 'Ca_19238_v3' => 'car', 'Ca_19373_v3' => 'car', 'Ca_21079_v3' => 'car', 'CBR_g54016' => 'cbr', 'CBR_g54018' => 'cbr', 'CBR_g54020' => 'cbr', 'Cc01_g09780' => 'ccan', 'Cc01_g11680' => 'ccan', 'Cc02_g15610' => 'ccan', 'Cc05_g04350' => 'ccan', 'Cc09_g01580' => 'ccan', 'CDE01G0795' => 'cde', 'CDE02G2024' => 'cde', 'CDE02G2260' => 'cde', 'CDE02G4561' => 'cde', 'CDE05G2733' => 'cde', 'CDE05G3422' => 'cde', 'CDE06G2003' => 'cde', 'CDE08G0576' => 'cde', 'CDE09G0048' => 'cde', 'CDE11G0805' => 'cde', 'Cfa003644' => 'cfa', 'Cfa006290' => 'cfa', 'Cfa010080' => 'cfa', 'Cfa011376' => 'cfa', 'Cfa011576' => 'cfa', 'Cfa011577' => 'cfa', 'Cfa014389' => 'cfa', 'Ciclev10006044m.g' => 'ccl', 'Ciclev10006954m.g' => 'ccl', 'Ciclev10015131m.g' => 'ccl', 'Ciclev10015580m.g' => 'ccl', 'Ciclev10028359m.g' => 'ccl', 'Ciclev10028573m.g' => 'ccl', 'CiPaw.03G159300' => 'cil', 'CiPaw.04G115100' => 'cil', 'CiPaw.09G092800' => 'cil', 'CiPaw.10G071800' => 'cil', 'CiPaw.13G105800' => 'cil', 'CiPaw.13G141000' => 'cil', 'CiPaw.14G103400' => 'cil', 'ClCG01G012700' => 'cla', 'ClCG01G012720' => 'cla', 'ClCG01G021920' => 'cla', 'ClCG02G008870' => 'cla', 'ClCG02G020840' => 'cla', 'ClCG02G021930' => 'cla', 'COL.COLO4_19302' => 'col', 'COL.COLO4_25262' => 'col', 'COL.COLO4_31788' => 'col', 'Cpa.g.c34684' => 'cpa', 'Cpa.g.c36520.1' => 'cpa', 'Cpa.g.c45626' => 'cpa', 'Cpa.g.sc121.17' => 'cpa', 'Cpa.g.sc13.22' => 'cpa', 'Cpa.g.sc87.88' => 'cpa', 'Cre06.g261800' => 'cre', 'CsaV3_1G014500' => 'csa', 'CsaV3_1G014510' => 'csa', 'CsaV3_2G034880' => 'csa', 'CsaV3_6G014760' => 'csa', 'CsaV3_6G021500' => 'csa', 'CsaV3_6G048980' => 'csa', 'CSS0002511' => 'camsi', 'CSS0007556' => 'camsi', 'CSS0008532' => 'camsi', 'CSS0009709' => 'camsi', 'CSS0010486' => 'camsi', 'CSS0016768' => 'camsi', 'CSS0023512' => 'camsi', 'CSS0025341' => 'camsi', 'CSS0027999' => 'camsi', 'CSS0028944' => 'camsi', 'CSS0032292' => 'camsi', 'CSS0032464' => 'camsi', 'CSS0037153' => 'camsi', 'CSS0039256' => 'camsi', 'CSS0048392' => 'camsi', 'CSS0050458' => 'camsi', 'DCAR_004224' => 'dca', 'DCAR_006147' => 'dca', 'DCAR_006465' => 'dca', 'DCAR_008159' => 'dca', 'DCAR_012164' => 'dca', 'DCAR_019764' => 'dca', 'Dinv05418' => 'din', 'Dinv10839' => 'din', 'Dinv12521' => 'din', 'Dinv13900' => 'din', 'Dinv29426' => 'din', 'Duzib150G0263' => 'dzi', 'Duzib168G1178' => 'dzi', 'Duzib168G1924' => 'dzi', 'Duzib170G0299' => 'dzi', 'Duzib170G0813' => 'dzi', 'Duzib235G1128' => 'dzi', 'Duzib248G1060' => 'dzi', 'ECA232G1910' => 'eca', 'ECA233G4621' => 'eca', 'ECA238G1216' => 'eca', 'ECA238G1784' => 'eca', 'ECA248G1242' => 'eca', 'EL10Ac8g20071' => 'bvu', 'EL10Ac9g21086' => 'bvu', 'EL10Ac9g22407' => 'bvu', 'EL10Ac9g22412' => 'bvu', 'Eucgr.A01119' => 'egr', 'Eucgr.E04043' => 'egr', 'Eucgr.J00428' => 'egr', 'Eucgr.J00958' => 'egr', 'FAN11G3091' => 'fan', 'FAN11G3651' => 'fan', 'FAN16G2566' => 'fan', 'FAN21G3155' => 'fan', 'FAN21G3400' => 'fan', 'FAN21G3543' => 'fan', 'FAN25G0234' => 'fan', 'FAN25G1422' => 'fan', 'FAN25G3392' => 'fan', 'FvH4_3g01940' => 'fve', 'FvH4_3g29870' => 'fve', 'FvH4_3g33680' => 'fve', 'Glyma.09G004200' => 'gma', 'Glyma.11G151288' => 'gma', 'Glyma.11G189100' => 'gma', 'Glyma.12G072500' => 'gma', 'Glyma.12G085500' => 'gma', 'Glyma.12G181800' => 'gma', 'Glyma.12G193000' => 'gma', 'Glyma.13G309300' => 'gma', 'Glyma.13G319000' => 'gma', 'Glyma.17G012600' => 'gma', 'Gohir.A06G148600' => 'ghi', 'Gohir.A07G115800' => 'ghi', 'Gohir.A08G003600' => 'ghi', 'Gohir.A09G093300' => 'ghi', 'Gohir.A09G105400' => 'ghi', 'Gohir.A09G105500' => 'ghi', 'Gohir.D06G154600' => 'ghi', 'Gohir.D07G120200' => 'ghi', 'Gohir.D08G013900' => 'ghi', 'Gohir.D09G093100' => 'ghi', 'Gohir.D09G102200' => 'ghi', 'Gohir.D09G102300' => 'ghi', 'Gorai.001G129400' => 'gra', 'Gorai.004G008200' => 'gra', 'Gorai.006G109800' => 'gra', 'Gorai.006G119500' => 'gra', 'Gorai.006G121300' => 'gra', 'Gorai.010G180700' => 'gra', 'GSVIVG01012716001' => 'vvi', 'GSVIVG01025118001' => 'vvi', 'GSVIVG01030439001' => 'vvi', 'GSVIVG01031397001' => 'vvi', 'HanXRQChr01g0004201' => 'han', 'HanXRQChr02g0054941' => 'han', 'HanXRQChr05g0141811' => 'han', 'HanXRQChr07g0197751' => 'han', 'HanXRQChr11g0346691' => 'han', 'HanXRQChr13g0396971' => 'han', 'HanXRQChr14g0432951' => 'han', 'HanXRQChr14g0452001' => 'han', 'HanXRQChr15g0496681' => 'han', 'HanXRQChr17g0557491' => 'han', 'HanXRQChr17g0557501' => 'han', 'Haze_06809' => 'cav', 'Haze_12852' => 'cav', 'Haze_15850' => 'cav', 'Haze_23446' => 'cav', 'Haze_23942' => 'cav', 'Haze_23943' => 'cav', 'Hma1.2p1_0091F.1_g046450' => 'hma', 'Hma1.2p1_0128F.1_g059910' => 'hma', 'Hma1.2p1_0249F.1_g102260' => 'hma', 'Hma1.2p1_0453F.1_g156190' => 'hma', 'Hma1.2p1_0695F.1_g204380' => 'hma', 'Hma1.2p1_0749F.1_g212650' => 'hma', 'Hma1.2p1_2156F.1_g315420' => 'hma', 'Hma1.2p1_2686F.1_g326940' => 'hma', 'HPP92_006428' => 'vpl', 'HPP92_012069' => 'vpl', 'HPP92_014129' => 'vpl', 'HPP92_014133' => 'vpl', 'HPP92_017315' => 'vpl', 'HPP92_026445' => 'vpl', 'HPP92_026446' => 'vpl', 'Hund00774' => 'sun', 'Hund07682' => 'sun', 'Hund21413' => 'sun', 'Hund23462' => 'sun', 'Hund23463' => 'sun', 'Lalb_Chr03g0027911' => 'lal', 'Lalb_Chr13g0304271' => 'lal', 'Lalb_Chr19g0137471' => 'lal', 'Lalb_Chr22g0350651' => 'lal', 'Lalb_Chr24g0395151' => 'lal', 'Lj1A1231T40' => 'lonja', 'Lj1A221T48' => 'lonja', 'Lj1C924T12' => 'lonja', 'Lj2C993G6' => 'lonja', 'Lj3g0005790' => 'lja', 'Lj3g0015432' => 'lja', 'Lj3g0017722' => 'lja', 'Lj3g0018497' => 'lja', 'Lj4g0025071' => 'lja', 'Lsat_1_v5_gn_1_129680' => 'lsa', 'Lsat_1_v5_gn_2_25321' => 'lsa', 'Lsat_1_v5_gn_2_95461' => 'lsa', 'Lsat_1_v5_gn_4_159620' => 'lsa', 'Lsat_1_v5_gn_6_41301' => 'lsa', 'Lsat_1_v5_gn_6_74660' => 'lsa', 'Lsat_1_v5_gn_7_11520' => 'lsa', 'Lsat_1_v5_gn_9_67680' => 'lsa', 'Manes.04G008300' => 'mes', 'Manes.04G008400' => 'mes', 'Manes.04G026500' => 'mes', 'Manes.10G135300' => 'mes', 'Manes.11G157300' => 'mes', 'Manes.12G074000' => 'mes', 'Manes.16G006200' => 'mes', 'Manes.17G026400' => 'mes', 'Mapoly0024s0086' => 'mpo', 'Mapoly0024s0087' => 'mpo', 'Mapoly0071s0057' => 'mpo', 'Mapoly0204s0012' => 'mpo', 'MBI04_g37681_MAGBIO' => 'mbi', 'MBI05_g17779_MAGBIO' => 'mbi', 'MBI12_g31184_MAGBIO' => 'mbi', 'MBI17_g11083_MAGBIO' => 'mbi', 'MBI18_g03883_MAGBIO' => 'mbi', 'MBI18_g28940_MAGBIO' => 'mbi', 'MCO01G690' => 'mco', 'MD03G1109900' => 'mdo', 'MD03G1134800' => 'mdo', 'MD05G1348000' => 'mdo', 'MD10G1322400' => 'mdo', 'MD11G1123300' => 'mdo', 'MD11G1157600' => 'mdo', 'Medtr2g084875' => 'mtr', 'Medtr2g088130' => 'mtr', 'Medtr4g055310' => 'mtr', 'Medtr4g061070' => 'mtr', 'Medtr4g132250' => 'mtr', 'MELO3C004795.2' => 'cme', 'MELO3C004797.2' => 'cme', 'MELO3C007396.2' => 'cme', 'MELO3C019277.2' => 'cme', 'MELO3C021449.2' => 'cme', 'MELO3C025736.2' => 'cme', 'Migut.D02175' => 'egut', 'Migut.H01573' => 'egut', 'Migut.M01327' => 'egut', 'Migut.N02513' => 'egut', 'MSTRG.14638' => 'ama', 'MSTRG.18632' => 'ama', 'MSTRG.7203' => 'ama', 'Nitab4.5_0000533g0140' => 'nta', 'Nitab4.5_0000888g0150' => 'nta', 'Nitab4.5_0001453g0040' => 'nta', 'Nitab4.5_0002827g0090' => 'nta', 'Nitab4.5_0003082g0040' => 'nta', 'Nitab4.5_0007799g0040' => 'nta', 'Nitab4.5_0008983g0010' => 'nta', 'Nitab4.5_0009017g0020' => 'nta', 'Nn1g02132' => 'nnu', 'Nn1g03492' => 'nnu', 'Nn1g03493' => 'nnu', 'Nn1g03494' => 'nnu', 'Nn1g07164' => 'nnu', 'Nn1g07291' => 'nnu', 'Nn2g10655' => 'nnu', 'Nn2g11652' => 'nnu', 'Nn2g14008' => 'nnu', 'Nn3g17476' => 'nnu', 'Nn3g17477' => 'nnu', 'Nn4g22370' => 'nnu', 'Nn4g25255' => 'nnu', 'Nn5g27755' => 'nnu', 'Nn6g34260' => 'nnu', 'Nn6g35041' => 'nnu', 'Oeu005924.1' => 'oeu', 'Oeu008383.1' => 'oeu', 'Oeu014928.1' => 'oeu', 'Oeu019889.1' => 'oeu', 'Oeu022271.1' => 'oeu', 'Oeu025271.1' => 'oeu', 'Oeu036302.1' => 'oeu', 'Oeu044100.1' => 'oeu', 'Os01g0528300' => 'osa', 'Os03g0286200' => 'osa', 'Os04g0406600' => 'osa', 'Os07g0512000' => 'osa', 'Os07g0694600' => 'osa', 'Os08g0411000' => 'osa', 'Os09g0565700' => 'osa', 'Os09g0566050' => 'osa', 'Os10g0523700' => 'osa', 'Peaxi162Scf00002g00514' => 'pax', 'Peaxi162Scf00047g01817' => 'pax', 'Peaxi162Scf00114g00001' => 'pax', 'Peaxi162Scf00147g00613' => 'pax', 'Peaxi162Scf00389g00425' => 'pax', 'PGR042G1139' => 'pgr', 'PGR042G3273' => 'pgr', 'PGR102G2180' => 'pgr', 'PGR119G0234' => 'pgr', 'PGR119G0668' => 'pgr', 'PGSC0003DMG400007122' => 'stu', 'PGSC0003DMG400016478' => 'stu', 'PGSC0003DMG400025374' => 'stu', 'PGSC0003DMG400026536' => 'stu', 'Phvul.003G079600' => 'pvu', 'Phvul.005G115600' => 'pvu', 'Phvul.005G127100' => 'pvu', 'Phvul.006G149500' => 'pvu', 'Phvul.006G149600' => 'pvu', 'Phvul.011G071800' => 'pvu', 'Phvul.011G090400' => 'pvu', 'Potri.004G013400' => 'ptr', 'Potri.004G188100' => 'ptr', 'Potri.008G195500' => 'ptr', 'Potri.009G148800' => 'ptr', 'Potri.011G004700' => 'ptr', 'Pp3c17_22810' => 'ppa', 'Pp3c18_4480' => 'ppa', 'Pp3c19_13030' => 'ppa', 'Pp3c1_33620' => 'ppa', 'Pp3c2_9380' => 'ppa', 'PRCOL_00001023' => 'pco', 'Prupe.3G216300' => 'ppe', 'Prupe.4G019500' => 'ppe', 'Prupe.6G092500' => 'ppe', 'Prupe.6G119200' => 'ppe', 'Psat0s1945g0080' => 'psa', 'Psat0s4167g0040' => 'psa', 'Psat1g185800' => 'psa', 'Psat4g006440' => 'psa', 'Psat4g006480' => 'psa', 'Psat4g168120' => 'psa', 'Psat5g255680' => 'psa', 'Psat5g261760' => 'psa', 'Psat7g222120' => 'psa', 'PSO063G7252' => 'pso', 'PSO170G4778' => 'pso', 'PSO210G2249' => 'pso', 'PSO339G2411' => 'pso', 'PSO339G2457' => 'pso', 'PSO339G2854' => 'pso', 'PSO339G4288' => 'pso', 'PSO339G4615' => 'pso', 'PSO384G2796' => 'pso', 'PSO384G2940' => 'pso', 'PSO384G4227' => 'pso', 'PSO478G1425' => 'pso', 'PSO541G3863' => 'pso', 'PSO675G0507' => 'pso', 'PSO782G0338' => 'pso', 'PSO832G0644' => 'pso', 'QL01p013664' => 'qlo', 'QL01p036598' => 'qlo', 'QL05p072984' => 'qlo', 'QL08p005768' => 'qlo', 'QL08p032743' => 'qlo', 'QL93p0073_0439' => 'qlo', 'QL93p0073_0444' => 'qlo', 'RcHm_v2.0_Chr5g0002851' => 'rch', 'RcHm_v2.0_Chr5g0055201' => 'rch', 'RcHm_v2.0_Chr5g0061191' => 'rch', 'RcHm_v2.0_Chr7g0203231' => 'rch', 'Rhsim01G0208100' => 'rsi', 'Rhsim01G0208200' => 'rsi', 'Rhsim02G0106500' => 'rsi', 'Rhsim03G0107900' => 'rsi', 'Rhsim06G0163400' => 'rsi', 'Rhsim13G0105200' => 'rsi', 'Sabra04G0006300' => 'sbr', 'Sabra04G0127000' => 'sbr', 'Sabra08G0148700' => 'sbr', 'Sabra09G0117400' => 'sbr', 'SalBow1G3326' => 'sbo', 'SalBow3G3228' => 'sbo', 'SalBow6G1634' => 'sbo', 'SalBow6G3603' => 'sbo', 'SalBow6G5266' => 'sbo', 'SalBow7G2265' => 'sbo', 'SalBow8G0850' => 'sbo', 'SalBow8G2592' => 'sbo', 'Sc05g0009240' => 'sci', 'Sc12g0002300' => 'sci', 'Sc21g0000100' => 'sci', 'Sc21g0004720' => 'sci', 'Sed0002949' => 'sed', 'Sed0004114' => 'sed', 'Sed0004306' => 'sed', 'Sed0006172' => 'sed', 'Sed0008413' => 'sed', 'Sed0013809' => 'sed', 'Sed0019556' => 'sed', 'SEGI_03570' => 'sgi', 'SEGI_07859' => 'sgi', 'SEGI_15042' => 'sgi', 'SEGI_16263' => 'sgi', 'SEGI_16552' => 'sgi', 'SEGI_24331' => 'sgi', 'SEGI_27316' => 'sgi', 'SEGI_29521' => 'sgi', 'SEGI_41342' => 'sgi', 'SGA_v2.0_scaffold27G11617' => 'sas', 'SGA_v2.0_scaffold316G48428' => 'sas', 'SGA_v2.0_scaffold49G18261' => 'sas', 'SGA_v2.0_scaffold7G03831' => 'sas', 'SGA_v2.0_scaffold93G28359' => 'sas', 'SHI02210' => 'shi', 'SHI06028' => 'shi', 'SHI06321' => 'shi', 'SMO111G0012' => 'smo', 'SMO228G0080' => 'smo', 'SMO356G0756' => 'smo', 'Solyc02g080620.3' => 'sly', 'Solyc06g074530.1' => 'sly', 'Solyc11g066890.1' => 'sly', 'Solyc11g072520.3' => 'sly', 'Sopen02g025330' => 'spe', 'Sopen06g031000' => 'spe', 'Sopen09g008240' => 'spe', 'Sopen09g025210' => 'spe', 'Sopen11g026600' => 'spe', 'Sopen11g030170' => 'spe', 'Sp1g10420' => 'spa', 'Sp3g06570' => 'spa', 'Sp4g10660' => 'spa', 'Sp5g16460' => 'spa', 'Sp6g22710' => 'spa', 'TAR365G0112' => 'tar', 'TAR369G0717' => 'tar', 'TAR374G0976' => 'tar', 'TAR623G1128' => 'tar', 'TAR626G1937' => 'tar', 'TAR627G0123' => 'tar', 'TAR628G0305' => 'tar', 'TAR636G1176' => 'tar', 'TAR636G2442' => 'tar', 'THA.LOC104800556' => 'tha', 'THA.LOC104809501' => 'tha', 'THA.LOC104815126' => 'tha', 'THA.LOC104815732' => 'tha', 'THA.LOC104823528' => 'tha', 'Thecc.02G365600' => 'tca', 'Thecc.06G222300' => 'tca', 'Thecc.09G261800' => 'tca', 'Thecc.09G291400' => 'tca', 'Thhalv10003028m.g' => 'esa', 'Thhalv10007886m.g' => 'esa', 'Thhalv10016085m.g' => 'esa', 'Thhalv10016681m.g' => 'esa', 'Thhalv10020951m.g' => 'esa', 'TPR.G15598' => 'tpr', 'TPR.G29305' => 'tpr', 'TPR.G32395' => 'tpr', 'TPR.G36998' => 'tpr', 'TPR.G4227' => 'tpr', 'TWI18G1433' => 'twi', 'TWI31G0755' => 'twi', 'TWI38G0912' => 'twi', 'TWI75G1097' => 'twi', 'TWI75G1619' => 'twi', 'TWI79G1336' => 'twi', 'unitig_0.g943' => 'ugi', 'unitig_0.g944' => 'ugi', 'unitig_22.g6646' => 'ugi', 'unitig_37.g12681' => 'ugi', 'unitig_8.g3290' => 'ugi', 'vmacro03278' => 'vma', 'vmacro12197' => 'vma', 'vmacro14478' => 'vma', 'vmacro15787' => 'vma', 'vmacro15789' => 'vma', 'vmacro15790' => 'vma', 'vmacro15806' => 'vma', 'vmacro22907' => 'vma', 'vmacro22908' => 'vma', 'vmacro22909' => 'vma', 'vmacro23108' => 'vma', 'VMungo0540G0540' => 'vmu', 'VMungo0540G2468' => 'vmu', 'VMungo1080G0390' => 'vmu', 'VMungo1080G1165' => 'vmu', 'VMungo1127G0170' => 'vmu', 'VMungo1127G2099' => 'vmu', 'VMungo1215G3013' => 'vmu', 'Zm00001eb013110' => 'zma', 'Zm00001eb084260' => 'zma', 'Zm00001eb096110' => 'zma', 'Zm00001eb217510' => 'zma', 'Zm00001eb322550' => 'zma', 'Zm00001eb390770' => 'zma', 'Zm00001eb397170' => 'zma', 'Zm00001eb404610' => 'zma', 'Zm00001eb421790' => 'zma' ) $gf_id = 'HOM05D000911' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000911' ) $data_identifier = 'HOM05D000911' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 16, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 5, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 6, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 8, 'nnu' => (int) 16, 'oeu' => (int) 8, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 5, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 16, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421790' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000911', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27780' => 'bna', 'A03p35380' => 'bna', 'A04p21160' => 'bna', 'A05p40570' => 'bna', 'A06p26900' => 'bna', 'A08p33230' => 'bna', 'A09p65960' => 'bna', 'A10p18290' => 'bna', 'Aa31LG1G12990' => 'aar', 'Aa31LG1G2980' => 'aar', 'Aa31LG4G14320' => 'aar', 'Aa31LG7G11800' => 'aar', 'Aa31sc36G50' => 'aar', 'Aa31sc36G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3721' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5459' => 'aag', 'Actinidia03028' => 'ach', 'Actinidia03753' => 'ach', 'Actinidia04187' => 'ach', 'Actinidia05509' => 'ach', 'Actinidia24180' => 'ach', 'Actinidia26906' => 'ach', 'Actinidia37097' => 'ach', 'Actinidia38249' => 'ach', 'Ah.01g003470' => 'amhyb', 'Ah.01g004580' => 'amhyb', 'Ah.01g014850' => 'amhyb', 'Ah.01g016830' => 'amhyb', 'Ah.14g088000' => 'amhyb', 'AL1G22980' => 'aly', 'AL3G18990' => 'aly', 'AL4G22440' => 'aly', 'AL4G33180' => 'aly', 'AL5G22920' => 'aly', 'AL6G33660' => 'aly', 'AL8G20720' => 'aly', 'Aqoxy1G00935' => 'aox', 'Aqoxy1G02094' => 'aox', 'Aqoxy2G01239' => 'aox', 'Aqoxy4G01870' => 'aox', 'Aqoxy7G00450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.36ZVTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71EM27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5D6C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH3WRE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3NCM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RIM768' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YB5YRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z36GDV' => 'arhy', 'AT1G08250' => 'ath', 'AT1G11790' => 'ath', 'AT2G27820' => 'ath', 'AT3G07630' => 'ath', 'AT3G44720' => 'ath', 'AT5G22630' => 'ath', 'ATR0693G304' => 'atr', 'ATR0794G109' => 'atr', 'ATR0820G120' => 'atr', 'ATR1159G064' => 'atr', 'Atru.chr10.2239' => 'acertr', 'Atru.chr3.3371' => 'acertr', 'Atru.chr6.3202' => 'acertr', 'AUR62006499' => 'cqu', 'AUR62012718' => 'cqu', 'AUR62021938' => 'cqu', 'AUR62023932' => 'cqu', 'AUR62025034' => 'cqu', 'AUR62025035' => 'cqu', 'AUR62038307' => 'cqu', 'AUR62043466' => 'cqu', 'BcaB02g10748' => 'bca', 'BcaB03g13231' => 'bca', 'BcaB03g14689' => 'bca', 'BcaB05g22716' => 'bca', 'BcaB06g28172' => 'bca', 'BcaB08g36413' => 'bca', 'BcaC01g02186' => 'bca', 'BcaC01g04272' => 'bca', 'BcaC02g08080' => 'bca', 'BcaC02g08227' => 'bca', 'BcaC03g13901' => 'bca', 'BcaC04g19593' => 'bca', 'BcaC04g20874' => 'bca', 'BcaC05g29557' => 'bca', 'BcaC06g35505' => 'bca', 'BcaC07g41954' => 'bca', 'BcaC07g41955' => 'bca', 'BcaC07g41956' => 'bca', 'BcaC07g42519' => 'bca', 'BcaC07g42520' => 'bca', 'BcaC07g42523' => 'bca', 'BcaC07g42524' => 'bca', 'BcaC07g42525' => 'bca', 'BcaC08g47480' => 'bca', 'BcaC08g47481' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00530' => 'bna', 'BolC2t07178H' => 'bol', 'BolC3t16567H' => 'bol', 'BolC4t27234H' => 'bol', 'BolC5t29728H' => 'bol', 'BolC5t34622H' => 'bol', 'BolC6t40321H' => 'bol', 'BolC7t42028H' => 'bol', 'BolC8t49125H' => 'bol', 'BolC8t52538H' => 'bol', 'BolC8t52539H' => 'bol', 'BolC9t56681H' => 'bol', 'BolC9t58266H' => 'bol', 'BolSC21t60294H' => 'bol', 'BraA02t05670Z' => 'bra', 'BraA03t12716Z' => 'bra', 'BraA04t17685Z' => 'bra', 'BraA05t22788Z' => 'bra', 'BraA06t24032Z' => 'bra', 'BraA06t25625Z' => 'bra', 'BraA07t27930Z' => 'bra', 'BraA08t35242Z' => 'bra', 'BraA09t38609Z' => 'bra', 'BraA10t43905Z' => 'bra', 'C02p11060' => 'bna', 'C03p42990' => 'bna', 'C03p67310' => 'bna', 'C04p56990' => 'bna', 'C04p58660' => 'bna', 'C05p09890' => 'bna', 'C05p59680' => 'bna', 'C06p19830' => 'bna', 'C06p53040' => 'bna', 'C07p15230' => 'bna', 'C08p50070' => 'bna', 'C08p50090' => 'bna', 'C09p38330' => 'bna', 'C09p53940' => 'bna', 'CAN.G1014.1' => 'can', 'CAN.G644.30' => 'can', 'CAN.G84.47' => 'can', 'CAN.G919.8' => 'can', 'CANSAT54G0113' => 'cansat', 'CANSAT54G1286' => 'cansat', 'CANSAT64G1020' => 'cansat', 'CARHR008080' => 'chi', 'CARHR008090' => 'chi', 'CARHR012130' => 'chi', 'CARHR038390' => 'chi', 'CARHR082330' => 'chi', 'CARHR120520' => 'chi', 'CARHR151470' => 'chi', 'CARHR190950' => 'chi', 'Carub.0001s0760' => 'cru', 'Carub.0001s1146' => 'cru', 'Carub.0003s0721' => 'cru', 'Carub.0004s0858' => 'cru', 'Carub.0005s1040' => 'cru', 'Carub.0006s2035' => 'cru', 'Carub.0015s0005' => 'cru', 'Ca_01607_v3' => 'car', 'Ca_01677_v3' => 'car', 'Ca_06087_v3' => 'car', 'Ca_19238_v3' => 'car', 'Ca_19373_v3' => 'car', 'Ca_21079_v3' => 'car', 'CBR_g54016' => 'cbr', 'CBR_g54018' => 'cbr', 'CBR_g54020' => 'cbr', 'Cc01_g09780' => 'ccan', 'Cc01_g11680' => 'ccan', 'Cc02_g15610' => 'ccan', 'Cc05_g04350' => 'ccan', 'Cc09_g01580' => 'ccan', 'CDE01G0795' => 'cde', 'CDE02G2024' => 'cde', 'CDE02G2260' => 'cde', 'CDE02G4561' => 'cde', 'CDE05G2733' => 'cde', 'CDE05G3422' => 'cde', 'CDE06G2003' => 'cde', 'CDE08G0576' => 'cde', 'CDE09G0048' => 'cde', 'CDE11G0805' => 'cde', 'Cfa003644' => 'cfa', 'Cfa006290' => 'cfa', 'Cfa010080' => 'cfa', 'Cfa011376' => 'cfa', 'Cfa011576' => 'cfa', 'Cfa011577' => 'cfa', 'Cfa014389' => 'cfa', 'Ciclev10006044m.g' => 'ccl', 'Ciclev10006954m.g' => 'ccl', 'Ciclev10015131m.g' => 'ccl', 'Ciclev10015580m.g' => 'ccl', 'Ciclev10028359m.g' => 'ccl', 'Ciclev10028573m.g' => 'ccl', 'CiPaw.03G159300' => 'cil', 'CiPaw.04G115100' => 'cil', 'CiPaw.09G092800' => 'cil', 'CiPaw.10G071800' => 'cil', 'CiPaw.13G105800' => 'cil', 'CiPaw.13G141000' => 'cil', 'CiPaw.14G103400' => 'cil', 'ClCG01G012700' => 'cla', 'ClCG01G012720' => 'cla', 'ClCG01G021920' => 'cla', 'ClCG02G008870' => 'cla', 'ClCG02G020840' => 'cla', 'ClCG02G021930' => 'cla', 'COL.COLO4_19302' => 'col', 'COL.COLO4_25262' => 'col', 'COL.COLO4_31788' => 'col', 'Cpa.g.c34684' => 'cpa', 'Cpa.g.c36520.1' => 'cpa', 'Cpa.g.c45626' => 'cpa', 'Cpa.g.sc121.17' => 'cpa', 'Cpa.g.sc13.22' => 'cpa', 'Cpa.g.sc87.88' => 'cpa', 'Cre06.g261800' => 'cre', 'CsaV3_1G014500' => 'csa', 'CsaV3_1G014510' => 'csa', 'CsaV3_2G034880' => 'csa', 'CsaV3_6G014760' => 'csa', 'CsaV3_6G021500' => 'csa', 'CsaV3_6G048980' => 'csa', 'CSS0002511' => 'camsi', 'CSS0007556' => 'camsi', 'CSS0008532' => 'camsi', 'CSS0009709' => 'camsi', 'CSS0010486' => 'camsi', 'CSS0016768' => 'camsi', 'CSS0023512' => 'camsi', 'CSS0025341' => 'camsi', 'CSS0027999' => 'camsi', 'CSS0028944' => 'camsi', 'CSS0032292' => 'camsi', 'CSS0032464' => 'camsi', 'CSS0037153' => 'camsi', 'CSS0039256' => 'camsi', 'CSS0048392' => 'camsi', 'CSS0050458' => 'camsi', 'DCAR_004224' => 'dca', 'DCAR_006147' => 'dca', 'DCAR_006465' => 'dca', 'DCAR_008159' => 'dca', 'DCAR_012164' => 'dca', 'DCAR_019764' => 'dca', 'Dinv05418' => 'din', 'Dinv10839' => 'din', 'Dinv12521' => 'din', 'Dinv13900' => 'din', 'Dinv29426' => 'din', 'Duzib150G0263' => 'dzi', 'Duzib168G1178' => 'dzi', 'Duzib168G1924' => 'dzi', 'Duzib170G0299' => 'dzi', 'Duzib170G0813' => 'dzi', 'Duzib235G1128' => 'dzi', 'Duzib248G1060' => 'dzi', 'ECA232G1910' => 'eca', 'ECA233G4621' => 'eca', 'ECA238G1216' => 'eca', 'ECA238G1784' => 'eca', 'ECA248G1242' => 'eca', 'EL10Ac8g20071' => 'bvu', 'EL10Ac9g21086' => 'bvu', 'EL10Ac9g22407' => 'bvu', 'EL10Ac9g22412' => 'bvu', 'Eucgr.A01119' => 'egr', 'Eucgr.E04043' => 'egr', 'Eucgr.J00428' => 'egr', 'Eucgr.J00958' => 'egr', 'FAN11G3091' => 'fan', 'FAN11G3651' => 'fan', 'FAN16G2566' => 'fan', 'FAN21G3155' => 'fan', 'FAN21G3400' => 'fan', 'FAN21G3543' => 'fan', 'FAN25G0234' => 'fan', 'FAN25G1422' => 'fan', 'FAN25G3392' => 'fan', 'FvH4_3g01940' => 'fve', 'FvH4_3g29870' => 'fve', 'FvH4_3g33680' => 'fve', 'Glyma.09G004200' => 'gma', 'Glyma.11G151288' => 'gma', 'Glyma.11G189100' => 'gma', 'Glyma.12G072500' => 'gma', 'Glyma.12G085500' => 'gma', 'Glyma.12G181800' => 'gma', 'Glyma.12G193000' => 'gma', 'Glyma.13G309300' => 'gma', 'Glyma.13G319000' => 'gma', 'Glyma.17G012600' => 'gma', 'Gohir.A06G148600' => 'ghi', 'Gohir.A07G115800' => 'ghi', 'Gohir.A08G003600' => 'ghi', 'Gohir.A09G093300' => 'ghi', 'Gohir.A09G105400' => 'ghi', 'Gohir.A09G105500' => 'ghi', 'Gohir.D06G154600' => 'ghi', 'Gohir.D07G120200' => 'ghi', 'Gohir.D08G013900' => 'ghi', 'Gohir.D09G093100' => 'ghi', 'Gohir.D09G102200' => 'ghi', 'Gohir.D09G102300' => 'ghi', 'Gorai.001G129400' => 'gra', 'Gorai.004G008200' => 'gra', 'Gorai.006G109800' => 'gra', 'Gorai.006G119500' => 'gra', 'Gorai.006G121300' => 'gra', 'Gorai.010G180700' => 'gra', 'GSVIVG01012716001' => 'vvi', 'GSVIVG01025118001' => 'vvi', 'GSVIVG01030439001' => 'vvi', 'GSVIVG01031397001' => 'vvi', 'HanXRQChr01g0004201' => 'han', 'HanXRQChr02g0054941' => 'han', 'HanXRQChr05g0141811' => 'han', 'HanXRQChr07g0197751' => 'han', 'HanXRQChr11g0346691' => 'han', 'HanXRQChr13g0396971' => 'han', 'HanXRQChr14g0432951' => 'han', 'HanXRQChr14g0452001' => 'han', 'HanXRQChr15g0496681' => 'han', 'HanXRQChr17g0557491' => 'han', 'HanXRQChr17g0557501' => 'han', 'Haze_06809' => 'cav', 'Haze_12852' => 'cav', 'Haze_15850' => 'cav', 'Haze_23446' => 'cav', 'Haze_23942' => 'cav', 'Haze_23943' => 'cav', 'Hma1.2p1_0091F.1_g046450' => 'hma', 'Hma1.2p1_0128F.1_g059910' => 'hma', 'Hma1.2p1_0249F.1_g102260' => 'hma', 'Hma1.2p1_0453F.1_g156190' => 'hma', 'Hma1.2p1_0695F.1_g204380' => 'hma', 'Hma1.2p1_0749F.1_g212650' => 'hma', 'Hma1.2p1_2156F.1_g315420' => 'hma', 'Hma1.2p1_2686F.1_g326940' => 'hma', 'HPP92_006428' => 'vpl', 'HPP92_012069' => 'vpl', 'HPP92_014129' => 'vpl', 'HPP92_014133' => 'vpl', 'HPP92_017315' => 'vpl', 'HPP92_026445' => 'vpl', 'HPP92_026446' => 'vpl', 'Hund00774' => 'sun', 'Hund07682' => 'sun', 'Hund21413' => 'sun', 'Hund23462' => 'sun', 'Hund23463' => 'sun', 'Lalb_Chr03g0027911' => 'lal', 'Lalb_Chr13g0304271' => 'lal', 'Lalb_Chr19g0137471' => 'lal', 'Lalb_Chr22g0350651' => 'lal', 'Lalb_Chr24g0395151' => 'lal', 'Lj1A1231T40' => 'lonja', 'Lj1A221T48' => 'lonja', 'Lj1C924T12' => 'lonja', 'Lj2C993G6' => 'lonja', 'Lj3g0005790' => 'lja', 'Lj3g0015432' => 'lja', 'Lj3g0017722' => 'lja', 'Lj3g0018497' => 'lja', 'Lj4g0025071' => 'lja', 'Lsat_1_v5_gn_1_129680' => 'lsa', 'Lsat_1_v5_gn_2_25321' => 'lsa', 'Lsat_1_v5_gn_2_95461' => 'lsa', 'Lsat_1_v5_gn_4_159620' => 'lsa', 'Lsat_1_v5_gn_6_41301' => 'lsa', 'Lsat_1_v5_gn_6_74660' => 'lsa', 'Lsat_1_v5_gn_7_11520' => 'lsa', 'Lsat_1_v5_gn_9_67680' => 'lsa', 'Manes.04G008300' => 'mes', 'Manes.04G008400' => 'mes', 'Manes.04G026500' => 'mes', 'Manes.10G135300' => 'mes', 'Manes.11G157300' => 'mes', 'Manes.12G074000' => 'mes', 'Manes.16G006200' => 'mes', 'Manes.17G026400' => 'mes', 'Mapoly0024s0086' => 'mpo', 'Mapoly0024s0087' => 'mpo', 'Mapoly0071s0057' => 'mpo', 'Mapoly0204s0012' => 'mpo', 'MBI04_g37681_MAGBIO' => 'mbi', 'MBI05_g17779_MAGBIO' => 'mbi', 'MBI12_g31184_MAGBIO' => 'mbi', 'MBI17_g11083_MAGBIO' => 'mbi', 'MBI18_g03883_MAGBIO' => 'mbi', 'MBI18_g28940_MAGBIO' => 'mbi', 'MCO01G690' => 'mco', 'MD03G1109900' => 'mdo', 'MD03G1134800' => 'mdo', 'MD05G1348000' => 'mdo', 'MD10G1322400' => 'mdo', 'MD11G1123300' => 'mdo', 'MD11G1157600' => 'mdo', 'Medtr2g084875' => 'mtr', 'Medtr2g088130' => 'mtr', 'Medtr4g055310' => 'mtr', 'Medtr4g061070' => 'mtr', 'Medtr4g132250' => 'mtr', 'MELO3C004795.2' => 'cme', 'MELO3C004797.2' => 'cme', 'MELO3C007396.2' => 'cme', 'MELO3C019277.2' => 'cme', 'MELO3C021449.2' => 'cme', 'MELO3C025736.2' => 'cme', 'Migut.D02175' => 'egut', 'Migut.H01573' => 'egut', 'Migut.M01327' => 'egut', 'Migut.N02513' => 'egut', 'MSTRG.14638' => 'ama', 'MSTRG.18632' => 'ama', 'MSTRG.7203' => 'ama', 'Nitab4.5_0000533g0140' => 'nta', 'Nitab4.5_0000888g0150' => 'nta', 'Nitab4.5_0001453g0040' => 'nta', 'Nitab4.5_0002827g0090' => 'nta', 'Nitab4.5_0003082g0040' => 'nta', 'Nitab4.5_0007799g0040' => 'nta', 'Nitab4.5_0008983g0010' => 'nta', 'Nitab4.5_0009017g0020' => 'nta', 'Nn1g02132' => 'nnu', 'Nn1g03492' => 'nnu', 'Nn1g03493' => 'nnu', 'Nn1g03494' => 'nnu', 'Nn1g07164' => 'nnu', 'Nn1g07291' => 'nnu', 'Nn2g10655' => 'nnu', 'Nn2g11652' => 'nnu', 'Nn2g14008' => 'nnu', 'Nn3g17476' => 'nnu', 'Nn3g17477' => 'nnu', 'Nn4g22370' => 'nnu', 'Nn4g25255' => 'nnu', 'Nn5g27755' => 'nnu', 'Nn6g34260' => 'nnu', 'Nn6g35041' => 'nnu', 'Oeu005924.1' => 'oeu', 'Oeu008383.1' => 'oeu', 'Oeu014928.1' => 'oeu', 'Oeu019889.1' => 'oeu', 'Oeu022271.1' => 'oeu', 'Oeu025271.1' => 'oeu', 'Oeu036302.1' => 'oeu', 'Oeu044100.1' => 'oeu', 'Os01g0528300' => 'osa', 'Os03g0286200' => 'osa', 'Os04g0406600' => 'osa', 'Os07g0512000' => 'osa', 'Os07g0694600' => 'osa', 'Os08g0411000' => 'osa', 'Os09g0565700' => 'osa', 'Os09g0566050' => 'osa', 'Os10g0523700' => 'osa', 'Peaxi162Scf00002g00514' => 'pax', 'Peaxi162Scf00047g01817' => 'pax', 'Peaxi162Scf00114g00001' => 'pax', 'Peaxi162Scf00147g00613' => 'pax', 'Peaxi162Scf00389g00425' => 'pax', 'PGR042G1139' => 'pgr', 'PGR042G3273' => 'pgr', 'PGR102G2180' => 'pgr', 'PGR119G0234' => 'pgr', 'PGR119G0668' => 'pgr', 'PGSC0003DMG400007122' => 'stu', 'PGSC0003DMG400016478' => 'stu', 'PGSC0003DMG400025374' => 'stu', 'PGSC0003DMG400026536' => 'stu', 'Phvul.003G079600' => 'pvu', 'Phvul.005G115600' => 'pvu', 'Phvul.005G127100' => 'pvu', 'Phvul.006G149500' => 'pvu', 'Phvul.006G149600' => 'pvu', 'Phvul.011G071800' => 'pvu', 'Phvul.011G090400' => 'pvu', 'Potri.004G013400' => 'ptr', 'Potri.004G188100' => 'ptr', 'Potri.008G195500' => 'ptr', 'Potri.009G148800' => 'ptr', 'Potri.011G004700' => 'ptr', 'Pp3c17_22810' => 'ppa', 'Pp3c18_4480' => 'ppa', 'Pp3c19_13030' => 'ppa', 'Pp3c1_33620' => 'ppa', 'Pp3c2_9380' => 'ppa', 'PRCOL_00001023' => 'pco', 'Prupe.3G216300' => 'ppe', 'Prupe.4G019500' => 'ppe', 'Prupe.6G092500' => 'ppe', 'Prupe.6G119200' => 'ppe', 'Psat0s1945g0080' => 'psa', 'Psat0s4167g0040' => 'psa', 'Psat1g185800' => 'psa', 'Psat4g006440' => 'psa', 'Psat4g006480' => 'psa', 'Psat4g168120' => 'psa', 'Psat5g255680' => 'psa', 'Psat5g261760' => 'psa', 'Psat7g222120' => 'psa', 'PSO063G7252' => 'pso', 'PSO170G4778' => 'pso', 'PSO210G2249' => 'pso', 'PSO339G2411' => 'pso', 'PSO339G2457' => 'pso', 'PSO339G2854' => 'pso', 'PSO339G4288' => 'pso', 'PSO339G4615' => 'pso', 'PSO384G2796' => 'pso', 'PSO384G2940' => 'pso', 'PSO384G4227' => 'pso', 'PSO478G1425' => 'pso', 'PSO541G3863' => 'pso', 'PSO675G0507' => 'pso', 'PSO782G0338' => 'pso', 'PSO832G0644' => 'pso', 'QL01p013664' => 'qlo', 'QL01p036598' => 'qlo', 'QL05p072984' => 'qlo', 'QL08p005768' => 'qlo', 'QL08p032743' => 'qlo', 'QL93p0073_0439' => 'qlo', 'QL93p0073_0444' => 'qlo', 'RcHm_v2.0_Chr5g0002851' => 'rch', 'RcHm_v2.0_Chr5g0055201' => 'rch', 'RcHm_v2.0_Chr5g0061191' => 'rch', 'RcHm_v2.0_Chr7g0203231' => 'rch', 'Rhsim01G0208100' => 'rsi', 'Rhsim01G0208200' => 'rsi', 'Rhsim02G0106500' => 'rsi', 'Rhsim03G0107900' => 'rsi', 'Rhsim06G0163400' => 'rsi', 'Rhsim13G0105200' => 'rsi', 'Sabra04G0006300' => 'sbr', 'Sabra04G0127000' => 'sbr', 'Sabra08G0148700' => 'sbr', 'Sabra09G0117400' => 'sbr', 'SalBow1G3326' => 'sbo', 'SalBow3G3228' => 'sbo', 'SalBow6G1634' => 'sbo', 'SalBow6G3603' => 'sbo', 'SalBow6G5266' => 'sbo', 'SalBow7G2265' => 'sbo', 'SalBow8G0850' => 'sbo', 'SalBow8G2592' => 'sbo', 'Sc05g0009240' => 'sci', 'Sc12g0002300' => 'sci', 'Sc21g0000100' => 'sci', 'Sc21g0004720' => 'sci', 'Sed0002949' => 'sed', 'Sed0004114' => 'sed', 'Sed0004306' => 'sed', 'Sed0006172' => 'sed', 'Sed0008413' => 'sed', 'Sed0013809' => 'sed', 'Sed0019556' => 'sed', 'SEGI_03570' => 'sgi', 'SEGI_07859' => 'sgi', 'SEGI_15042' => 'sgi', 'SEGI_16263' => 'sgi', 'SEGI_16552' => 'sgi', 'SEGI_24331' => 'sgi', 'SEGI_27316' => 'sgi', 'SEGI_29521' => 'sgi', 'SEGI_41342' => 'sgi', 'SGA_v2.0_scaffold27G11617' => 'sas', 'SGA_v2.0_scaffold316G48428' => 'sas', 'SGA_v2.0_scaffold49G18261' => 'sas', 'SGA_v2.0_scaffold7G03831' => 'sas', 'SGA_v2.0_scaffold93G28359' => 'sas', 'SHI02210' => 'shi', 'SHI06028' => 'shi', 'SHI06321' => 'shi', 'SMO111G0012' => 'smo', 'SMO228G0080' => 'smo', 'SMO356G0756' => 'smo', 'Solyc02g080620.3' => 'sly', 'Solyc06g074530.1' => 'sly', 'Solyc11g066890.1' => 'sly', 'Solyc11g072520.3' => 'sly', 'Sopen02g025330' => 'spe', 'Sopen06g031000' => 'spe', 'Sopen09g008240' => 'spe', 'Sopen09g025210' => 'spe', 'Sopen11g026600' => 'spe', 'Sopen11g030170' => 'spe', 'Sp1g10420' => 'spa', 'Sp3g06570' => 'spa', 'Sp4g10660' => 'spa', 'Sp5g16460' => 'spa', 'Sp6g22710' => 'spa', 'TAR365G0112' => 'tar', 'TAR369G0717' => 'tar', 'TAR374G0976' => 'tar', 'TAR623G1128' => 'tar', 'TAR626G1937' => 'tar', 'TAR627G0123' => 'tar', 'TAR628G0305' => 'tar', 'TAR636G1176' => 'tar', 'TAR636G2442' => 'tar', 'THA.LOC104800556' => 'tha', 'THA.LOC104809501' => 'tha', 'THA.LOC104815126' => 'tha', 'THA.LOC104815732' => 'tha', 'THA.LOC104823528' => 'tha', 'Thecc.02G365600' => 'tca', 'Thecc.06G222300' => 'tca', 'Thecc.09G261800' => 'tca', 'Thecc.09G291400' => 'tca', 'Thhalv10003028m.g' => 'esa', 'Thhalv10007886m.g' => 'esa', 'Thhalv10016085m.g' => 'esa', 'Thhalv10016681m.g' => 'esa', 'Thhalv10020951m.g' => 'esa', 'TPR.G15598' => 'tpr', 'TPR.G29305' => 'tpr', 'TPR.G32395' => 'tpr', 'TPR.G36998' => 'tpr', 'TPR.G4227' => 'tpr', 'TWI18G1433' => 'twi', 'TWI31G0755' => 'twi', 'TWI38G0912' => 'twi', 'TWI75G1097' => 'twi', 'TWI75G1619' => 'twi', 'TWI79G1336' => 'twi', 'unitig_0.g943' => 'ugi', 'unitig_0.g944' => 'ugi', 'unitig_22.g6646' => 'ugi', 'unitig_37.g12681' => 'ugi', 'unitig_8.g3290' => 'ugi', 'vmacro03278' => 'vma', 'vmacro12197' => 'vma', 'vmacro14478' => 'vma', 'vmacro15787' => 'vma', 'vmacro15789' => 'vma', 'vmacro15790' => 'vma', 'vmacro15806' => 'vma', 'vmacro22907' => 'vma', 'vmacro22908' => 'vma', 'vmacro22909' => 'vma', 'vmacro23108' => 'vma', 'VMungo0540G0540' => 'vmu', 'VMungo0540G2468' => 'vmu', 'VMungo1080G0390' => 'vmu', 'VMungo1080G1165' => 'vmu', 'VMungo1127G0170' => 'vmu', 'VMungo1127G2099' => 'vmu', 'VMungo1215G3013' => 'vmu', 'Zm00001eb013110' => 'zma', 'Zm00001eb084260' => 'zma', 'Zm00001eb096110' => 'zma', 'Zm00001eb217510' => 'zma', 'Zm00001eb322550' => 'zma', 'Zm00001eb390770' => 'zma', 'Zm00001eb397170' => 'zma', 'Zm00001eb404610' => 'zma', 'Zm00001eb421790' => 'zma' ), 'gf_id' => 'HOM05D000911', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000911' ), 'data_identifier' => 'HOM05D000911', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000911', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27780' => 'bna', 'A03p35380' => 'bna', 'A04p21160' => 'bna', 'A05p40570' => 'bna', 'A06p26900' => 'bna', 'A08p33230' => 'bna', 'A09p65960' => 'bna', 'A10p18290' => 'bna', 'Aa31LG1G12990' => 'aar', 'Aa31LG1G2980' => 'aar', 'Aa31LG4G14320' => 'aar', 'Aa31LG7G11800' => 'aar', 'Aa31sc36G50' => 'aar', 'Aa31sc36G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3721' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5459' => 'aag', 'Actinidia03028' => 'ach', 'Actinidia03753' => 'ach', 'Actinidia04187' => 'ach', 'Actinidia05509' => 'ach', 'Actinidia24180' => 'ach', 'Actinidia26906' => 'ach', 'Actinidia37097' => 'ach', 'Actinidia38249' => 'ach', 'Ah.01g003470' => 'amhyb', 'Ah.01g004580' => 'amhyb', 'Ah.01g014850' => 'amhyb', 'Ah.01g016830' => 'amhyb', 'Ah.14g088000' => 'amhyb', 'AL1G22980' => 'aly', 'AL3G18990' => 'aly', 'AL4G22440' => 'aly', 'AL4G33180' => 'aly', 'AL5G22920' => 'aly', 'AL6G33660' => 'aly', 'AL8G20720' => 'aly', 'Aqoxy1G00935' => 'aox', 'Aqoxy1G02094' => 'aox', 'Aqoxy2G01239' => 'aox', 'Aqoxy4G01870' => 'aox', 'Aqoxy7G00450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.36ZVTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71EM27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5D6C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH3WRE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3NCM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RIM768' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YB5YRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z36GDV' => 'arhy', 'AT1G08250' => 'ath', 'AT1G11790' => 'ath', 'AT2G27820' => 'ath', 'AT3G07630' => 'ath', 'AT3G44720' => 'ath', 'AT5G22630' => 'ath', 'ATR0693G304' => 'atr', 'ATR0794G109' => 'atr', 'ATR0820G120' => 'atr', 'ATR1159G064' => 'atr', 'Atru.chr10.2239' => 'acertr', 'Atru.chr3.3371' => 'acertr', 'Atru.chr6.3202' => 'acertr', 'AUR62006499' => 'cqu', 'AUR62012718' => 'cqu', 'AUR62021938' => 'cqu', 'AUR62023932' => 'cqu', 'AUR62025034' => 'cqu', 'AUR62025035' => 'cqu', 'AUR62038307' => 'cqu', 'AUR62043466' => 'cqu', 'BcaB02g10748' => 'bca', 'BcaB03g13231' => 'bca', 'BcaB03g14689' => 'bca', 'BcaB05g22716' => 'bca', 'BcaB06g28172' => 'bca', 'BcaB08g36413' => 'bca', 'BcaC01g02186' => 'bca', 'BcaC01g04272' => 'bca', 'BcaC02g08080' => 'bca', 'BcaC02g08227' => 'bca', 'BcaC03g13901' => 'bca', 'BcaC04g19593' => 'bca', 'BcaC04g20874' => 'bca', 'BcaC05g29557' => 'bca', 'BcaC06g35505' => 'bca', 'BcaC07g41954' => 'bca', 'BcaC07g41955' => 'bca', 'BcaC07g41956' => 'bca', 'BcaC07g42519' => 'bca', 'BcaC07g42520' => 'bca', 'BcaC07g42523' => 'bca', 'BcaC07g42524' => 'bca', 'BcaC07g42525' => 'bca', 'BcaC08g47480' => 'bca', 'BcaC08g47481' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00530' => 'bna', 'BolC2t07178H' => 'bol', 'BolC3t16567H' => 'bol', 'BolC4t27234H' => 'bol', 'BolC5t29728H' => 'bol', 'BolC5t34622H' => 'bol', 'BolC6t40321H' => 'bol', 'BolC7t42028H' => 'bol', 'BolC8t49125H' => 'bol', 'BolC8t52538H' => 'bol', 'BolC8t52539H' => 'bol', 'BolC9t56681H' => 'bol', 'BolC9t58266H' => 'bol', 'BolSC21t60294H' => 'bol', 'BraA02t05670Z' => 'bra', 'BraA03t12716Z' => 'bra', 'BraA04t17685Z' => 'bra', 'BraA05t22788Z' => 'bra', 'BraA06t24032Z' => 'bra', 'BraA06t25625Z' => 'bra', 'BraA07t27930Z' => 'bra', 'BraA08t35242Z' => 'bra', 'BraA09t38609Z' => 'bra', 'BraA10t43905Z' => 'bra', 'C02p11060' => 'bna', 'C03p42990' => 'bna', 'C03p67310' => 'bna', 'C04p56990' => 'bna', 'C04p58660' => 'bna', 'C05p09890' => 'bna', 'C05p59680' => 'bna', 'C06p19830' => 'bna', 'C06p53040' => 'bna', 'C07p15230' => 'bna', 'C08p50070' => 'bna', 'C08p50090' => 'bna', 'C09p38330' => 'bna', 'C09p53940' => 'bna', 'CAN.G1014.1' => 'can', 'CAN.G644.30' => 'can', 'CAN.G84.47' => 'can', 'CAN.G919.8' => 'can', 'CANSAT54G0113' => 'cansat', 'CANSAT54G1286' => 'cansat', 'CANSAT64G1020' => 'cansat', 'CARHR008080' => 'chi', 'CARHR008090' => 'chi', 'CARHR012130' => 'chi', 'CARHR038390' => 'chi', 'CARHR082330' => 'chi', 'CARHR120520' => 'chi', 'CARHR151470' => 'chi', 'CARHR190950' => 'chi', 'Carub.0001s0760' => 'cru', 'Carub.0001s1146' => 'cru', 'Carub.0003s0721' => 'cru', 'Carub.0004s0858' => 'cru', 'Carub.0005s1040' => 'cru', 'Carub.0006s2035' => 'cru', 'Carub.0015s0005' => 'cru', 'Ca_01607_v3' => 'car', 'Ca_01677_v3' => 'car', 'Ca_06087_v3' => 'car', 'Ca_19238_v3' => 'car', 'Ca_19373_v3' => 'car', 'Ca_21079_v3' => 'car', 'CBR_g54016' => 'cbr', 'CBR_g54018' => 'cbr', 'CBR_g54020' => 'cbr', 'Cc01_g09780' => 'ccan', 'Cc01_g11680' => 'ccan', 'Cc02_g15610' => 'ccan', 'Cc05_g04350' => 'ccan', 'Cc09_g01580' => 'ccan', 'CDE01G0795' => 'cde', 'CDE02G2024' => 'cde', 'CDE02G2260' => 'cde', 'CDE02G4561' => 'cde', 'CDE05G2733' => 'cde', 'CDE05G3422' => 'cde', 'CDE06G2003' => 'cde', 'CDE08G0576' => 'cde', 'CDE09G0048' => 'cde', 'CDE11G0805' => 'cde', 'Cfa003644' => 'cfa', 'Cfa006290' => 'cfa', 'Cfa010080' => 'cfa', 'Cfa011376' => 'cfa', 'Cfa011576' => 'cfa', 'Cfa011577' => 'cfa', 'Cfa014389' => 'cfa', 'Ciclev10006044m.g' => 'ccl', 'Ciclev10006954m.g' => 'ccl', 'Ciclev10015131m.g' => 'ccl', 'Ciclev10015580m.g' => 'ccl', 'Ciclev10028359m.g' => 'ccl', 'Ciclev10028573m.g' => 'ccl', 'CiPaw.03G159300' => 'cil', 'CiPaw.04G115100' => 'cil', 'CiPaw.09G092800' => 'cil', 'CiPaw.10G071800' => 'cil', 'CiPaw.13G105800' => 'cil', 'CiPaw.13G141000' => 'cil', 'CiPaw.14G103400' => 'cil', 'ClCG01G012700' => 'cla', 'ClCG01G012720' => 'cla', 'ClCG01G021920' => 'cla', 'ClCG02G008870' => 'cla', 'ClCG02G020840' => 'cla', 'ClCG02G021930' => 'cla', 'COL.COLO4_19302' => 'col', 'COL.COLO4_25262' => 'col', 'COL.COLO4_31788' => 'col', 'Cpa.g.c34684' => 'cpa', 'Cpa.g.c36520.1' => 'cpa', 'Cpa.g.c45626' => 'cpa', 'Cpa.g.sc121.17' => 'cpa', 'Cpa.g.sc13.22' => 'cpa', 'Cpa.g.sc87.88' => 'cpa', 'Cre06.g261800' => 'cre', 'CsaV3_1G014500' => 'csa', 'CsaV3_1G014510' => 'csa', 'CsaV3_2G034880' => 'csa', 'CsaV3_6G014760' => 'csa', 'CsaV3_6G021500' => 'csa', 'CsaV3_6G048980' => 'csa', 'CSS0002511' => 'camsi', 'CSS0007556' => 'camsi', 'CSS0008532' => 'camsi', 'CSS0009709' => 'camsi', 'CSS0010486' => 'camsi', 'CSS0016768' => 'camsi', 'CSS0023512' => 'camsi', 'CSS0025341' => 'camsi', 'CSS0027999' => 'camsi', 'CSS0028944' => 'camsi', 'CSS0032292' => 'camsi', 'CSS0032464' => 'camsi', 'CSS0037153' => 'camsi', 'CSS0039256' => 'camsi', 'CSS0048392' => 'camsi', 'CSS0050458' => 'camsi', 'DCAR_004224' => 'dca', 'DCAR_006147' => 'dca', 'DCAR_006465' => 'dca', 'DCAR_008159' => 'dca', 'DCAR_012164' => 'dca', 'DCAR_019764' => 'dca', 'Dinv05418' => 'din', 'Dinv10839' => 'din', 'Dinv12521' => 'din', 'Dinv13900' => 'din', 'Dinv29426' => 'din', 'Duzib150G0263' => 'dzi', 'Duzib168G1178' => 'dzi', 'Duzib168G1924' => 'dzi', 'Duzib170G0299' => 'dzi', 'Duzib170G0813' => 'dzi', 'Duzib235G1128' => 'dzi', 'Duzib248G1060' => 'dzi', 'ECA232G1910' => 'eca', 'ECA233G4621' => 'eca', 'ECA238G1216' => 'eca', 'ECA238G1784' => 'eca', 'ECA248G1242' => 'eca', 'EL10Ac8g20071' => 'bvu', 'EL10Ac9g21086' => 'bvu', 'EL10Ac9g22407' => 'bvu', 'EL10Ac9g22412' => 'bvu', 'Eucgr.A01119' => 'egr', 'Eucgr.E04043' => 'egr', 'Eucgr.J00428' => 'egr', 'Eucgr.J00958' => 'egr', 'FAN11G3091' => 'fan', 'FAN11G3651' => 'fan', 'FAN16G2566' => 'fan', 'FAN21G3155' => 'fan', 'FAN21G3400' => 'fan', 'FAN21G3543' => 'fan', 'FAN25G0234' => 'fan', 'FAN25G1422' => 'fan', 'FAN25G3392' => 'fan', 'FvH4_3g01940' => 'fve', 'FvH4_3g29870' => 'fve', 'FvH4_3g33680' => 'fve', 'Glyma.09G004200' => 'gma', 'Glyma.11G151288' => 'gma', 'Glyma.11G189100' => 'gma', 'Glyma.12G072500' => 'gma', 'Glyma.12G085500' => 'gma', 'Glyma.12G181800' => 'gma', 'Glyma.12G193000' => 'gma', 'Glyma.13G309300' => 'gma', 'Glyma.13G319000' => 'gma', 'Glyma.17G012600' => 'gma', 'Gohir.A06G148600' => 'ghi', 'Gohir.A07G115800' => 'ghi', 'Gohir.A08G003600' => 'ghi', 'Gohir.A09G093300' => 'ghi', 'Gohir.A09G105400' => 'ghi', 'Gohir.A09G105500' => 'ghi', 'Gohir.D06G154600' => 'ghi', 'Gohir.D07G120200' => 'ghi', 'Gohir.D08G013900' => 'ghi', 'Gohir.D09G093100' => 'ghi', 'Gohir.D09G102200' => 'ghi', 'Gohir.D09G102300' => 'ghi', 'Gorai.001G129400' => 'gra', 'Gorai.004G008200' => 'gra', 'Gorai.006G109800' => 'gra', 'Gorai.006G119500' => 'gra', 'Gorai.006G121300' => 'gra', 'Gorai.010G180700' => 'gra', 'GSVIVG01012716001' => 'vvi', 'GSVIVG01025118001' => 'vvi', 'GSVIVG01030439001' => 'vvi', 'GSVIVG01031397001' => 'vvi', 'HanXRQChr01g0004201' => 'han', 'HanXRQChr02g0054941' => 'han', 'HanXRQChr05g0141811' => 'han', 'HanXRQChr07g0197751' => 'han', 'HanXRQChr11g0346691' => 'han', 'HanXRQChr13g0396971' => 'han', 'HanXRQChr14g0432951' => 'han', 'HanXRQChr14g0452001' => 'han', 'HanXRQChr15g0496681' => 'han', 'HanXRQChr17g0557491' => 'han', 'HanXRQChr17g0557501' => 'han', 'Haze_06809' => 'cav', 'Haze_12852' => 'cav', 'Haze_15850' => 'cav', 'Haze_23446' => 'cav', 'Haze_23942' => 'cav', 'Haze_23943' => 'cav', 'Hma1.2p1_0091F.1_g046450' => 'hma', 'Hma1.2p1_0128F.1_g059910' => 'hma', 'Hma1.2p1_0249F.1_g102260' => 'hma', 'Hma1.2p1_0453F.1_g156190' => 'hma', 'Hma1.2p1_0695F.1_g204380' => 'hma', 'Hma1.2p1_0749F.1_g212650' => 'hma', 'Hma1.2p1_2156F.1_g315420' => 'hma', 'Hma1.2p1_2686F.1_g326940' => 'hma', 'HPP92_006428' => 'vpl', 'HPP92_012069' => 'vpl', 'HPP92_014129' => 'vpl', 'HPP92_014133' => 'vpl', 'HPP92_017315' => 'vpl', 'HPP92_026445' => 'vpl', 'HPP92_026446' => 'vpl', 'Hund00774' => 'sun', 'Hund07682' => 'sun', 'Hund21413' => 'sun', 'Hund23462' => 'sun', 'Hund23463' => 'sun', 'Lalb_Chr03g0027911' => 'lal', 'Lalb_Chr13g0304271' => 'lal', 'Lalb_Chr19g0137471' => 'lal', 'Lalb_Chr22g0350651' => 'lal', 'Lalb_Chr24g0395151' => 'lal', 'Lj1A1231T40' => 'lonja', 'Lj1A221T48' => 'lonja', 'Lj1C924T12' => 'lonja', 'Lj2C993G6' => 'lonja', 'Lj3g0005790' => 'lja', 'Lj3g0015432' => 'lja', 'Lj3g0017722' => 'lja', 'Lj3g0018497' => 'lja', 'Lj4g0025071' => 'lja', 'Lsat_1_v5_gn_1_129680' => 'lsa', 'Lsat_1_v5_gn_2_25321' => 'lsa', 'Lsat_1_v5_gn_2_95461' => 'lsa', 'Lsat_1_v5_gn_4_159620' => 'lsa', 'Lsat_1_v5_gn_6_41301' => 'lsa', 'Lsat_1_v5_gn_6_74660' => 'lsa', 'Lsat_1_v5_gn_7_11520' => 'lsa', 'Lsat_1_v5_gn_9_67680' => 'lsa', 'Manes.04G008300' => 'mes', 'Manes.04G008400' => 'mes', 'Manes.04G026500' => 'mes', 'Manes.10G135300' => 'mes', 'Manes.11G157300' => 'mes', 'Manes.12G074000' => 'mes', 'Manes.16G006200' => 'mes', 'Manes.17G026400' => 'mes', 'Mapoly0024s0086' => 'mpo', 'Mapoly0024s0087' => 'mpo', 'Mapoly0071s0057' => 'mpo', 'Mapoly0204s0012' => 'mpo', 'MBI04_g37681_MAGBIO' => 'mbi', 'MBI05_g17779_MAGBIO' => 'mbi', 'MBI12_g31184_MAGBIO' => 'mbi', 'MBI17_g11083_MAGBIO' => 'mbi', 'MBI18_g03883_MAGBIO' => 'mbi', 'MBI18_g28940_MAGBIO' => 'mbi', 'MCO01G690' => 'mco', 'MD03G1109900' => 'mdo', 'MD03G1134800' => 'mdo', 'MD05G1348000' => 'mdo', 'MD10G1322400' => 'mdo', 'MD11G1123300' => 'mdo', 'MD11G1157600' => 'mdo', 'Medtr2g084875' => 'mtr', 'Medtr2g088130' => 'mtr', 'Medtr4g055310' => 'mtr', 'Medtr4g061070' => 'mtr', 'Medtr4g132250' => 'mtr', 'MELO3C004795.2' => 'cme', 'MELO3C004797.2' => 'cme', 'MELO3C007396.2' => 'cme', 'MELO3C019277.2' => 'cme', 'MELO3C021449.2' => 'cme', 'MELO3C025736.2' => 'cme', 'Migut.D02175' => 'egut', 'Migut.H01573' => 'egut', 'Migut.M01327' => 'egut', 'Migut.N02513' => 'egut', 'MSTRG.14638' => 'ama', 'MSTRG.18632' => 'ama', 'MSTRG.7203' => 'ama', 'Nitab4.5_0000533g0140' => 'nta', 'Nitab4.5_0000888g0150' => 'nta', 'Nitab4.5_0001453g0040' => 'nta', 'Nitab4.5_0002827g0090' => 'nta', 'Nitab4.5_0003082g0040' => 'nta', 'Nitab4.5_0007799g0040' => 'nta', 'Nitab4.5_0008983g0010' => 'nta', 'Nitab4.5_0009017g0020' => 'nta', 'Nn1g02132' => 'nnu', 'Nn1g03492' => 'nnu', 'Nn1g03493' => 'nnu', 'Nn1g03494' => 'nnu', 'Nn1g07164' => 'nnu', 'Nn1g07291' => 'nnu', 'Nn2g10655' => 'nnu', 'Nn2g11652' => 'nnu', 'Nn2g14008' => 'nnu', 'Nn3g17476' => 'nnu', 'Nn3g17477' => 'nnu', 'Nn4g22370' => 'nnu', 'Nn4g25255' => 'nnu', 'Nn5g27755' => 'nnu', 'Nn6g34260' => 'nnu', 'Nn6g35041' => 'nnu', 'Oeu005924.1' => 'oeu', 'Oeu008383.1' => 'oeu', 'Oeu014928.1' => 'oeu', 'Oeu019889.1' => 'oeu', 'Oeu022271.1' => 'oeu', 'Oeu025271.1' => 'oeu', 'Oeu036302.1' => 'oeu', 'Oeu044100.1' => 'oeu', 'Os01g0528300' => 'osa', 'Os03g0286200' => 'osa', 'Os04g0406600' => 'osa', 'Os07g0512000' => 'osa', 'Os07g0694600' => 'osa', 'Os08g0411000' => 'osa', 'Os09g0565700' => 'osa', 'Os09g0566050' => 'osa', 'Os10g0523700' => 'osa', 'Peaxi162Scf00002g00514' => 'pax', 'Peaxi162Scf00047g01817' => 'pax', 'Peaxi162Scf00114g00001' => 'pax', 'Peaxi162Scf00147g00613' => 'pax', 'Peaxi162Scf00389g00425' => 'pax', 'PGR042G1139' => 'pgr', 'PGR042G3273' => 'pgr', 'PGR102G2180' => 'pgr', 'PGR119G0234' => 'pgr', 'PGR119G0668' => 'pgr', 'PGSC0003DMG400007122' => 'stu', 'PGSC0003DMG400016478' => 'stu', 'PGSC0003DMG400025374' => 'stu', 'PGSC0003DMG400026536' => 'stu', 'Phvul.003G079600' => 'pvu', 'Phvul.005G115600' => 'pvu', 'Phvul.005G127100' => 'pvu', 'Phvul.006G149500' => 'pvu', 'Phvul.006G149600' => 'pvu', 'Phvul.011G071800' => 'pvu', 'Phvul.011G090400' => 'pvu', 'Potri.004G013400' => 'ptr', 'Potri.004G188100' => 'ptr', 'Potri.008G195500' => 'ptr', 'Potri.009G148800' => 'ptr', 'Potri.011G004700' => 'ptr', 'Pp3c17_22810' => 'ppa', 'Pp3c18_4480' => 'ppa', 'Pp3c19_13030' => 'ppa', 'Pp3c1_33620' => 'ppa', 'Pp3c2_9380' => 'ppa', 'PRCOL_00001023' => 'pco', 'Prupe.3G216300' => 'ppe', 'Prupe.4G019500' => 'ppe', 'Prupe.6G092500' => 'ppe', 'Prupe.6G119200' => 'ppe', 'Psat0s1945g0080' => 'psa', 'Psat0s4167g0040' => 'psa', 'Psat1g185800' => 'psa', 'Psat4g006440' => 'psa', 'Psat4g006480' => 'psa', 'Psat4g168120' => 'psa', 'Psat5g255680' => 'psa', 'Psat5g261760' => 'psa', 'Psat7g222120' => 'psa', 'PSO063G7252' => 'pso', 'PSO170G4778' => 'pso', 'PSO210G2249' => 'pso', 'PSO339G2411' => 'pso', 'PSO339G2457' => 'pso', 'PSO339G2854' => 'pso', 'PSO339G4288' => 'pso', 'PSO339G4615' => 'pso', 'PSO384G2796' => 'pso', 'PSO384G2940' => 'pso', 'PSO384G4227' => 'pso', 'PSO478G1425' => 'pso', 'PSO541G3863' => 'pso', 'PSO675G0507' => 'pso', 'PSO782G0338' => 'pso', 'PSO832G0644' => 'pso', 'QL01p013664' => 'qlo', 'QL01p036598' => 'qlo', 'QL05p072984' => 'qlo', 'QL08p005768' => 'qlo', 'QL08p032743' => 'qlo', 'QL93p0073_0439' => 'qlo', 'QL93p0073_0444' => 'qlo', 'RcHm_v2.0_Chr5g0002851' => 'rch', 'RcHm_v2.0_Chr5g0055201' => 'rch', 'RcHm_v2.0_Chr5g0061191' => 'rch', 'RcHm_v2.0_Chr7g0203231' => 'rch', 'Rhsim01G0208100' => 'rsi', 'Rhsim01G0208200' => 'rsi', 'Rhsim02G0106500' => 'rsi', 'Rhsim03G0107900' => 'rsi', 'Rhsim06G0163400' => 'rsi', 'Rhsim13G0105200' => 'rsi', 'Sabra04G0006300' => 'sbr', 'Sabra04G0127000' => 'sbr', 'Sabra08G0148700' => 'sbr', 'Sabra09G0117400' => 'sbr', 'SalBow1G3326' => 'sbo', 'SalBow3G3228' => 'sbo', 'SalBow6G1634' => 'sbo', 'SalBow6G3603' => 'sbo', 'SalBow6G5266' => 'sbo', 'SalBow7G2265' => 'sbo', 'SalBow8G0850' => 'sbo', 'SalBow8G2592' => 'sbo', 'Sc05g0009240' => 'sci', 'Sc12g0002300' => 'sci', 'Sc21g0000100' => 'sci', 'Sc21g0004720' => 'sci', 'Sed0002949' => 'sed', 'Sed0004114' => 'sed', 'Sed0004306' => 'sed', 'Sed0006172' => 'sed', 'Sed0008413' => 'sed', 'Sed0013809' => 'sed', 'Sed0019556' => 'sed', 'SEGI_03570' => 'sgi', 'SEGI_07859' => 'sgi', 'SEGI_15042' => 'sgi', 'SEGI_16263' => 'sgi', 'SEGI_16552' => 'sgi', 'SEGI_24331' => 'sgi', 'SEGI_27316' => 'sgi', 'SEGI_29521' => 'sgi', 'SEGI_41342' => 'sgi', 'SGA_v2.0_scaffold27G11617' => 'sas', 'SGA_v2.0_scaffold316G48428' => 'sas', 'SGA_v2.0_scaffold49G18261' => 'sas', 'SGA_v2.0_scaffold7G03831' => 'sas', 'SGA_v2.0_scaffold93G28359' => 'sas', 'SHI02210' => 'shi', 'SHI06028' => 'shi', 'SHI06321' => 'shi', 'SMO111G0012' => 'smo', 'SMO228G0080' => 'smo', 'SMO356G0756' => 'smo', 'Solyc02g080620.3' => 'sly', 'Solyc06g074530.1' => 'sly', 'Solyc11g066890.1' => 'sly', 'Solyc11g072520.3' => 'sly', 'Sopen02g025330' => 'spe', 'Sopen06g031000' => 'spe', 'Sopen09g008240' => 'spe', 'Sopen09g025210' => 'spe', 'Sopen11g026600' => 'spe', 'Sopen11g030170' => 'spe', 'Sp1g10420' => 'spa', 'Sp3g06570' => 'spa', 'Sp4g10660' => 'spa', 'Sp5g16460' => 'spa', 'Sp6g22710' => 'spa', 'TAR365G0112' => 'tar', 'TAR369G0717' => 'tar', 'TAR374G0976' => 'tar', 'TAR623G1128' => 'tar', 'TAR626G1937' => 'tar', 'TAR627G0123' => 'tar', 'TAR628G0305' => 'tar', 'TAR636G1176' => 'tar', 'TAR636G2442' => 'tar', 'THA.LOC104800556' => 'tha', 'THA.LOC104809501' => 'tha', 'THA.LOC104815126' => 'tha', 'THA.LOC104815732' => 'tha', 'THA.LOC104823528' => 'tha', 'Thecc.02G365600' => 'tca', 'Thecc.06G222300' => 'tca', 'Thecc.09G261800' => 'tca', 'Thecc.09G291400' => 'tca', 'Thhalv10003028m.g' => 'esa', 'Thhalv10007886m.g' => 'esa', 'Thhalv10016085m.g' => 'esa', 'Thhalv10016681m.g' => 'esa', 'Thhalv10020951m.g' => 'esa', 'TPR.G15598' => 'tpr', 'TPR.G29305' => 'tpr', 'TPR.G32395' => 'tpr', 'TPR.G36998' => 'tpr', 'TPR.G4227' => 'tpr', 'TWI18G1433' => 'twi', 'TWI31G0755' => 'twi', 'TWI38G0912' => 'twi', 'TWI75G1097' => 'twi', 'TWI75G1619' => 'twi', 'TWI79G1336' => 'twi', 'unitig_0.g943' => 'ugi', 'unitig_0.g944' => 'ugi', 'unitig_22.g6646' => 'ugi', 'unitig_37.g12681' => 'ugi', 'unitig_8.g3290' => 'ugi', 'vmacro03278' => 'vma', 'vmacro12197' => 'vma', 'vmacro14478' => 'vma', 'vmacro15787' => 'vma', 'vmacro15789' => 'vma', 'vmacro15790' => 'vma', 'vmacro15806' => 'vma', 'vmacro22907' => 'vma', 'vmacro22908' => 'vma', 'vmacro22909' => 'vma', 'vmacro23108' => 'vma', 'VMungo0540G0540' => 'vmu', 'VMungo0540G2468' => 'vmu', 'VMungo1080G0390' => 'vmu', 'VMungo1080G1165' => 'vmu', 'VMungo1127G0170' => 'vmu', 'VMungo1127G2099' => 'vmu', 'VMungo1215G3013' => 'vmu', 'Zm00001eb013110' => 'zma', 'Zm00001eb084260' => 'zma', 'Zm00001eb096110' => 'zma', 'Zm00001eb217510' => 'zma', 'Zm00001eb322550' => 'zma', 'Zm00001eb390770' => 'zma', 'Zm00001eb397170' => 'zma', 'Zm00001eb404610' => 'zma', 'Zm00001eb421790' => 'zma' ) $gf_id = 'HOM05D000911' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000911' ) $data_identifier = 'HOM05D000911' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 16, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 5, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 6, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 8, 'nnu' => (int) 16, 'oeu' => (int) 8, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 5, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 16, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421790' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000911', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27780' => 'bna', 'A03p35380' => 'bna', 'A04p21160' => 'bna', 'A05p40570' => 'bna', 'A06p26900' => 'bna', 'A08p33230' => 'bna', 'A09p65960' => 'bna', 'A10p18290' => 'bna', 'Aa31LG1G12990' => 'aar', 'Aa31LG1G2980' => 'aar', 'Aa31LG4G14320' => 'aar', 'Aa31LG7G11800' => 'aar', 'Aa31sc36G50' => 'aar', 'Aa31sc36G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3721' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5459' => 'aag', 'Actinidia03028' => 'ach', 'Actinidia03753' => 'ach', 'Actinidia04187' => 'ach', 'Actinidia05509' => 'ach', 'Actinidia24180' => 'ach', 'Actinidia26906' => 'ach', 'Actinidia37097' => 'ach', 'Actinidia38249' => 'ach', 'Ah.01g003470' => 'amhyb', 'Ah.01g004580' => 'amhyb', 'Ah.01g014850' => 'amhyb', 'Ah.01g016830' => 'amhyb', 'Ah.14g088000' => 'amhyb', 'AL1G22980' => 'aly', 'AL3G18990' => 'aly', 'AL4G22440' => 'aly', 'AL4G33180' => 'aly', 'AL5G22920' => 'aly', 'AL6G33660' => 'aly', 'AL8G20720' => 'aly', 'Aqoxy1G00935' => 'aox', 'Aqoxy1G02094' => 'aox', 'Aqoxy2G01239' => 'aox', 'Aqoxy4G01870' => 'aox', 'Aqoxy7G00450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.36ZVTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71EM27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5D6C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH3WRE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3NCM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RIM768' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YB5YRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z36GDV' => 'arhy', 'AT1G08250' => 'ath', 'AT1G11790' => 'ath', 'AT2G27820' => 'ath', 'AT3G07630' => 'ath', 'AT3G44720' => 'ath', 'AT5G22630' => 'ath', 'ATR0693G304' => 'atr', 'ATR0794G109' => 'atr', 'ATR0820G120' => 'atr', 'ATR1159G064' => 'atr', 'Atru.chr10.2239' => 'acertr', 'Atru.chr3.3371' => 'acertr', 'Atru.chr6.3202' => 'acertr', 'AUR62006499' => 'cqu', 'AUR62012718' => 'cqu', 'AUR62021938' => 'cqu', 'AUR62023932' => 'cqu', 'AUR62025034' => 'cqu', 'AUR62025035' => 'cqu', 'AUR62038307' => 'cqu', 'AUR62043466' => 'cqu', 'BcaB02g10748' => 'bca', 'BcaB03g13231' => 'bca', 'BcaB03g14689' => 'bca', 'BcaB05g22716' => 'bca', 'BcaB06g28172' => 'bca', 'BcaB08g36413' => 'bca', 'BcaC01g02186' => 'bca', 'BcaC01g04272' => 'bca', 'BcaC02g08080' => 'bca', 'BcaC02g08227' => 'bca', 'BcaC03g13901' => 'bca', 'BcaC04g19593' => 'bca', 'BcaC04g20874' => 'bca', 'BcaC05g29557' => 'bca', 'BcaC06g35505' => 'bca', 'BcaC07g41954' => 'bca', 'BcaC07g41955' => 'bca', 'BcaC07g41956' => 'bca', 'BcaC07g42519' => 'bca', 'BcaC07g42520' => 'bca', 'BcaC07g42523' => 'bca', 'BcaC07g42524' => 'bca', 'BcaC07g42525' => 'bca', 'BcaC08g47480' => 'bca', 'BcaC08g47481' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00530' => 'bna', 'BolC2t07178H' => 'bol', 'BolC3t16567H' => 'bol', 'BolC4t27234H' => 'bol', 'BolC5t29728H' => 'bol', 'BolC5t34622H' => 'bol', 'BolC6t40321H' => 'bol', 'BolC7t42028H' => 'bol', 'BolC8t49125H' => 'bol', 'BolC8t52538H' => 'bol', 'BolC8t52539H' => 'bol', 'BolC9t56681H' => 'bol', 'BolC9t58266H' => 'bol', 'BolSC21t60294H' => 'bol', 'BraA02t05670Z' => 'bra', 'BraA03t12716Z' => 'bra', 'BraA04t17685Z' => 'bra', 'BraA05t22788Z' => 'bra', 'BraA06t24032Z' => 'bra', 'BraA06t25625Z' => 'bra', 'BraA07t27930Z' => 'bra', 'BraA08t35242Z' => 'bra', 'BraA09t38609Z' => 'bra', 'BraA10t43905Z' => 'bra', 'C02p11060' => 'bna', 'C03p42990' => 'bna', 'C03p67310' => 'bna', 'C04p56990' => 'bna', 'C04p58660' => 'bna', 'C05p09890' => 'bna', 'C05p59680' => 'bna', 'C06p19830' => 'bna', 'C06p53040' => 'bna', 'C07p15230' => 'bna', 'C08p50070' => 'bna', 'C08p50090' => 'bna', 'C09p38330' => 'bna', 'C09p53940' => 'bna', 'CAN.G1014.1' => 'can', 'CAN.G644.30' => 'can', 'CAN.G84.47' => 'can', 'CAN.G919.8' => 'can', 'CANSAT54G0113' => 'cansat', 'CANSAT54G1286' => 'cansat', 'CANSAT64G1020' => 'cansat', 'CARHR008080' => 'chi', 'CARHR008090' => 'chi', 'CARHR012130' => 'chi', 'CARHR038390' => 'chi', 'CARHR082330' => 'chi', 'CARHR120520' => 'chi', 'CARHR151470' => 'chi', 'CARHR190950' => 'chi', 'Carub.0001s0760' => 'cru', 'Carub.0001s1146' => 'cru', 'Carub.0003s0721' => 'cru', 'Carub.0004s0858' => 'cru', 'Carub.0005s1040' => 'cru', 'Carub.0006s2035' => 'cru', 'Carub.0015s0005' => 'cru', 'Ca_01607_v3' => 'car', 'Ca_01677_v3' => 'car', 'Ca_06087_v3' => 'car', 'Ca_19238_v3' => 'car', 'Ca_19373_v3' => 'car', 'Ca_21079_v3' => 'car', 'CBR_g54016' => 'cbr', 'CBR_g54018' => 'cbr', 'CBR_g54020' => 'cbr', 'Cc01_g09780' => 'ccan', 'Cc01_g11680' => 'ccan', 'Cc02_g15610' => 'ccan', 'Cc05_g04350' => 'ccan', 'Cc09_g01580' => 'ccan', 'CDE01G0795' => 'cde', 'CDE02G2024' => 'cde', 'CDE02G2260' => 'cde', 'CDE02G4561' => 'cde', 'CDE05G2733' => 'cde', 'CDE05G3422' => 'cde', 'CDE06G2003' => 'cde', 'CDE08G0576' => 'cde', 'CDE09G0048' => 'cde', 'CDE11G0805' => 'cde', 'Cfa003644' => 'cfa', 'Cfa006290' => 'cfa', 'Cfa010080' => 'cfa', 'Cfa011376' => 'cfa', 'Cfa011576' => 'cfa', 'Cfa011577' => 'cfa', 'Cfa014389' => 'cfa', 'Ciclev10006044m.g' => 'ccl', 'Ciclev10006954m.g' => 'ccl', 'Ciclev10015131m.g' => 'ccl', 'Ciclev10015580m.g' => 'ccl', 'Ciclev10028359m.g' => 'ccl', 'Ciclev10028573m.g' => 'ccl', 'CiPaw.03G159300' => 'cil', 'CiPaw.04G115100' => 'cil', 'CiPaw.09G092800' => 'cil', 'CiPaw.10G071800' => 'cil', 'CiPaw.13G105800' => 'cil', 'CiPaw.13G141000' => 'cil', 'CiPaw.14G103400' => 'cil', 'ClCG01G012700' => 'cla', 'ClCG01G012720' => 'cla', 'ClCG01G021920' => 'cla', 'ClCG02G008870' => 'cla', 'ClCG02G020840' => 'cla', 'ClCG02G021930' => 'cla', 'COL.COLO4_19302' => 'col', 'COL.COLO4_25262' => 'col', 'COL.COLO4_31788' => 'col', 'Cpa.g.c34684' => 'cpa', 'Cpa.g.c36520.1' => 'cpa', 'Cpa.g.c45626' => 'cpa', 'Cpa.g.sc121.17' => 'cpa', 'Cpa.g.sc13.22' => 'cpa', 'Cpa.g.sc87.88' => 'cpa', 'Cre06.g261800' => 'cre', 'CsaV3_1G014500' => 'csa', 'CsaV3_1G014510' => 'csa', 'CsaV3_2G034880' => 'csa', 'CsaV3_6G014760' => 'csa', 'CsaV3_6G021500' => 'csa', 'CsaV3_6G048980' => 'csa', 'CSS0002511' => 'camsi', 'CSS0007556' => 'camsi', 'CSS0008532' => 'camsi', 'CSS0009709' => 'camsi', 'CSS0010486' => 'camsi', 'CSS0016768' => 'camsi', 'CSS0023512' => 'camsi', 'CSS0025341' => 'camsi', 'CSS0027999' => 'camsi', 'CSS0028944' => 'camsi', 'CSS0032292' => 'camsi', 'CSS0032464' => 'camsi', 'CSS0037153' => 'camsi', 'CSS0039256' => 'camsi', 'CSS0048392' => 'camsi', 'CSS0050458' => 'camsi', 'DCAR_004224' => 'dca', 'DCAR_006147' => 'dca', 'DCAR_006465' => 'dca', 'DCAR_008159' => 'dca', 'DCAR_012164' => 'dca', 'DCAR_019764' => 'dca', 'Dinv05418' => 'din', 'Dinv10839' => 'din', 'Dinv12521' => 'din', 'Dinv13900' => 'din', 'Dinv29426' => 'din', 'Duzib150G0263' => 'dzi', 'Duzib168G1178' => 'dzi', 'Duzib168G1924' => 'dzi', 'Duzib170G0299' => 'dzi', 'Duzib170G0813' => 'dzi', 'Duzib235G1128' => 'dzi', 'Duzib248G1060' => 'dzi', 'ECA232G1910' => 'eca', 'ECA233G4621' => 'eca', 'ECA238G1216' => 'eca', 'ECA238G1784' => 'eca', 'ECA248G1242' => 'eca', 'EL10Ac8g20071' => 'bvu', 'EL10Ac9g21086' => 'bvu', 'EL10Ac9g22407' => 'bvu', 'EL10Ac9g22412' => 'bvu', 'Eucgr.A01119' => 'egr', 'Eucgr.E04043' => 'egr', 'Eucgr.J00428' => 'egr', 'Eucgr.J00958' => 'egr', 'FAN11G3091' => 'fan', 'FAN11G3651' => 'fan', 'FAN16G2566' => 'fan', 'FAN21G3155' => 'fan', 'FAN21G3400' => 'fan', 'FAN21G3543' => 'fan', 'FAN25G0234' => 'fan', 'FAN25G1422' => 'fan', 'FAN25G3392' => 'fan', 'FvH4_3g01940' => 'fve', 'FvH4_3g29870' => 'fve', 'FvH4_3g33680' => 'fve', 'Glyma.09G004200' => 'gma', 'Glyma.11G151288' => 'gma', 'Glyma.11G189100' => 'gma', 'Glyma.12G072500' => 'gma', 'Glyma.12G085500' => 'gma', 'Glyma.12G181800' => 'gma', 'Glyma.12G193000' => 'gma', 'Glyma.13G309300' => 'gma', 'Glyma.13G319000' => 'gma', 'Glyma.17G012600' => 'gma', 'Gohir.A06G148600' => 'ghi', 'Gohir.A07G115800' => 'ghi', 'Gohir.A08G003600' => 'ghi', 'Gohir.A09G093300' => 'ghi', 'Gohir.A09G105400' => 'ghi', 'Gohir.A09G105500' => 'ghi', 'Gohir.D06G154600' => 'ghi', 'Gohir.D07G120200' => 'ghi', 'Gohir.D08G013900' => 'ghi', 'Gohir.D09G093100' => 'ghi', 'Gohir.D09G102200' => 'ghi', 'Gohir.D09G102300' => 'ghi', 'Gorai.001G129400' => 'gra', 'Gorai.004G008200' => 'gra', 'Gorai.006G109800' => 'gra', 'Gorai.006G119500' => 'gra', 'Gorai.006G121300' => 'gra', 'Gorai.010G180700' => 'gra', 'GSVIVG01012716001' => 'vvi', 'GSVIVG01025118001' => 'vvi', 'GSVIVG01030439001' => 'vvi', 'GSVIVG01031397001' => 'vvi', 'HanXRQChr01g0004201' => 'han', 'HanXRQChr02g0054941' => 'han', 'HanXRQChr05g0141811' => 'han', 'HanXRQChr07g0197751' => 'han', 'HanXRQChr11g0346691' => 'han', 'HanXRQChr13g0396971' => 'han', 'HanXRQChr14g0432951' => 'han', 'HanXRQChr14g0452001' => 'han', 'HanXRQChr15g0496681' => 'han', 'HanXRQChr17g0557491' => 'han', 'HanXRQChr17g0557501' => 'han', 'Haze_06809' => 'cav', 'Haze_12852' => 'cav', 'Haze_15850' => 'cav', 'Haze_23446' => 'cav', 'Haze_23942' => 'cav', 'Haze_23943' => 'cav', 'Hma1.2p1_0091F.1_g046450' => 'hma', 'Hma1.2p1_0128F.1_g059910' => 'hma', 'Hma1.2p1_0249F.1_g102260' => 'hma', 'Hma1.2p1_0453F.1_g156190' => 'hma', 'Hma1.2p1_0695F.1_g204380' => 'hma', 'Hma1.2p1_0749F.1_g212650' => 'hma', 'Hma1.2p1_2156F.1_g315420' => 'hma', 'Hma1.2p1_2686F.1_g326940' => 'hma', 'HPP92_006428' => 'vpl', 'HPP92_012069' => 'vpl', 'HPP92_014129' => 'vpl', 'HPP92_014133' => 'vpl', 'HPP92_017315' => 'vpl', 'HPP92_026445' => 'vpl', 'HPP92_026446' => 'vpl', 'Hund00774' => 'sun', 'Hund07682' => 'sun', 'Hund21413' => 'sun', 'Hund23462' => 'sun', 'Hund23463' => 'sun', 'Lalb_Chr03g0027911' => 'lal', 'Lalb_Chr13g0304271' => 'lal', 'Lalb_Chr19g0137471' => 'lal', 'Lalb_Chr22g0350651' => 'lal', 'Lalb_Chr24g0395151' => 'lal', 'Lj1A1231T40' => 'lonja', 'Lj1A221T48' => 'lonja', 'Lj1C924T12' => 'lonja', 'Lj2C993G6' => 'lonja', 'Lj3g0005790' => 'lja', 'Lj3g0015432' => 'lja', 'Lj3g0017722' => 'lja', 'Lj3g0018497' => 'lja', 'Lj4g0025071' => 'lja', 'Lsat_1_v5_gn_1_129680' => 'lsa', 'Lsat_1_v5_gn_2_25321' => 'lsa', 'Lsat_1_v5_gn_2_95461' => 'lsa', 'Lsat_1_v5_gn_4_159620' => 'lsa', 'Lsat_1_v5_gn_6_41301' => 'lsa', 'Lsat_1_v5_gn_6_74660' => 'lsa', 'Lsat_1_v5_gn_7_11520' => 'lsa', 'Lsat_1_v5_gn_9_67680' => 'lsa', 'Manes.04G008300' => 'mes', 'Manes.04G008400' => 'mes', 'Manes.04G026500' => 'mes', 'Manes.10G135300' => 'mes', 'Manes.11G157300' => 'mes', 'Manes.12G074000' => 'mes', 'Manes.16G006200' => 'mes', 'Manes.17G026400' => 'mes', 'Mapoly0024s0086' => 'mpo', 'Mapoly0024s0087' => 'mpo', 'Mapoly0071s0057' => 'mpo', 'Mapoly0204s0012' => 'mpo', 'MBI04_g37681_MAGBIO' => 'mbi', 'MBI05_g17779_MAGBIO' => 'mbi', 'MBI12_g31184_MAGBIO' => 'mbi', 'MBI17_g11083_MAGBIO' => 'mbi', 'MBI18_g03883_MAGBIO' => 'mbi', 'MBI18_g28940_MAGBIO' => 'mbi', 'MCO01G690' => 'mco', 'MD03G1109900' => 'mdo', 'MD03G1134800' => 'mdo', 'MD05G1348000' => 'mdo', 'MD10G1322400' => 'mdo', 'MD11G1123300' => 'mdo', 'MD11G1157600' => 'mdo', 'Medtr2g084875' => 'mtr', 'Medtr2g088130' => 'mtr', 'Medtr4g055310' => 'mtr', 'Medtr4g061070' => 'mtr', 'Medtr4g132250' => 'mtr', 'MELO3C004795.2' => 'cme', 'MELO3C004797.2' => 'cme', 'MELO3C007396.2' => 'cme', 'MELO3C019277.2' => 'cme', 'MELO3C021449.2' => 'cme', 'MELO3C025736.2' => 'cme', 'Migut.D02175' => 'egut', 'Migut.H01573' => 'egut', 'Migut.M01327' => 'egut', 'Migut.N02513' => 'egut', 'MSTRG.14638' => 'ama', 'MSTRG.18632' => 'ama', 'MSTRG.7203' => 'ama', 'Nitab4.5_0000533g0140' => 'nta', 'Nitab4.5_0000888g0150' => 'nta', 'Nitab4.5_0001453g0040' => 'nta', 'Nitab4.5_0002827g0090' => 'nta', 'Nitab4.5_0003082g0040' => 'nta', 'Nitab4.5_0007799g0040' => 'nta', 'Nitab4.5_0008983g0010' => 'nta', 'Nitab4.5_0009017g0020' => 'nta', 'Nn1g02132' => 'nnu', 'Nn1g03492' => 'nnu', 'Nn1g03493' => 'nnu', 'Nn1g03494' => 'nnu', 'Nn1g07164' => 'nnu', 'Nn1g07291' => 'nnu', 'Nn2g10655' => 'nnu', 'Nn2g11652' => 'nnu', 'Nn2g14008' => 'nnu', 'Nn3g17476' => 'nnu', 'Nn3g17477' => 'nnu', 'Nn4g22370' => 'nnu', 'Nn4g25255' => 'nnu', 'Nn5g27755' => 'nnu', 'Nn6g34260' => 'nnu', 'Nn6g35041' => 'nnu', 'Oeu005924.1' => 'oeu', 'Oeu008383.1' => 'oeu', 'Oeu014928.1' => 'oeu', 'Oeu019889.1' => 'oeu', 'Oeu022271.1' => 'oeu', 'Oeu025271.1' => 'oeu', 'Oeu036302.1' => 'oeu', 'Oeu044100.1' => 'oeu', 'Os01g0528300' => 'osa', 'Os03g0286200' => 'osa', 'Os04g0406600' => 'osa', 'Os07g0512000' => 'osa', 'Os07g0694600' => 'osa', 'Os08g0411000' => 'osa', 'Os09g0565700' => 'osa', 'Os09g0566050' => 'osa', 'Os10g0523700' => 'osa', 'Peaxi162Scf00002g00514' => 'pax', 'Peaxi162Scf00047g01817' => 'pax', 'Peaxi162Scf00114g00001' => 'pax', 'Peaxi162Scf00147g00613' => 'pax', 'Peaxi162Scf00389g00425' => 'pax', 'PGR042G1139' => 'pgr', 'PGR042G3273' => 'pgr', 'PGR102G2180' => 'pgr', 'PGR119G0234' => 'pgr', 'PGR119G0668' => 'pgr', 'PGSC0003DMG400007122' => 'stu', 'PGSC0003DMG400016478' => 'stu', 'PGSC0003DMG400025374' => 'stu', 'PGSC0003DMG400026536' => 'stu', 'Phvul.003G079600' => 'pvu', 'Phvul.005G115600' => 'pvu', 'Phvul.005G127100' => 'pvu', 'Phvul.006G149500' => 'pvu', 'Phvul.006G149600' => 'pvu', 'Phvul.011G071800' => 'pvu', 'Phvul.011G090400' => 'pvu', 'Potri.004G013400' => 'ptr', 'Potri.004G188100' => 'ptr', 'Potri.008G195500' => 'ptr', 'Potri.009G148800' => 'ptr', 'Potri.011G004700' => 'ptr', 'Pp3c17_22810' => 'ppa', 'Pp3c18_4480' => 'ppa', 'Pp3c19_13030' => 'ppa', 'Pp3c1_33620' => 'ppa', 'Pp3c2_9380' => 'ppa', 'PRCOL_00001023' => 'pco', 'Prupe.3G216300' => 'ppe', 'Prupe.4G019500' => 'ppe', 'Prupe.6G092500' => 'ppe', 'Prupe.6G119200' => 'ppe', 'Psat0s1945g0080' => 'psa', 'Psat0s4167g0040' => 'psa', 'Psat1g185800' => 'psa', 'Psat4g006440' => 'psa', 'Psat4g006480' => 'psa', 'Psat4g168120' => 'psa', 'Psat5g255680' => 'psa', 'Psat5g261760' => 'psa', 'Psat7g222120' => 'psa', 'PSO063G7252' => 'pso', 'PSO170G4778' => 'pso', 'PSO210G2249' => 'pso', 'PSO339G2411' => 'pso', 'PSO339G2457' => 'pso', 'PSO339G2854' => 'pso', 'PSO339G4288' => 'pso', 'PSO339G4615' => 'pso', 'PSO384G2796' => 'pso', 'PSO384G2940' => 'pso', 'PSO384G4227' => 'pso', 'PSO478G1425' => 'pso', 'PSO541G3863' => 'pso', 'PSO675G0507' => 'pso', 'PSO782G0338' => 'pso', 'PSO832G0644' => 'pso', 'QL01p013664' => 'qlo', 'QL01p036598' => 'qlo', 'QL05p072984' => 'qlo', 'QL08p005768' => 'qlo', 'QL08p032743' => 'qlo', 'QL93p0073_0439' => 'qlo', 'QL93p0073_0444' => 'qlo', 'RcHm_v2.0_Chr5g0002851' => 'rch', 'RcHm_v2.0_Chr5g0055201' => 'rch', 'RcHm_v2.0_Chr5g0061191' => 'rch', 'RcHm_v2.0_Chr7g0203231' => 'rch', 'Rhsim01G0208100' => 'rsi', 'Rhsim01G0208200' => 'rsi', 'Rhsim02G0106500' => 'rsi', 'Rhsim03G0107900' => 'rsi', 'Rhsim06G0163400' => 'rsi', 'Rhsim13G0105200' => 'rsi', 'Sabra04G0006300' => 'sbr', 'Sabra04G0127000' => 'sbr', 'Sabra08G0148700' => 'sbr', 'Sabra09G0117400' => 'sbr', 'SalBow1G3326' => 'sbo', 'SalBow3G3228' => 'sbo', 'SalBow6G1634' => 'sbo', 'SalBow6G3603' => 'sbo', 'SalBow6G5266' => 'sbo', 'SalBow7G2265' => 'sbo', 'SalBow8G0850' => 'sbo', 'SalBow8G2592' => 'sbo', 'Sc05g0009240' => 'sci', 'Sc12g0002300' => 'sci', 'Sc21g0000100' => 'sci', 'Sc21g0004720' => 'sci', 'Sed0002949' => 'sed', 'Sed0004114' => 'sed', 'Sed0004306' => 'sed', 'Sed0006172' => 'sed', 'Sed0008413' => 'sed', 'Sed0013809' => 'sed', 'Sed0019556' => 'sed', 'SEGI_03570' => 'sgi', 'SEGI_07859' => 'sgi', 'SEGI_15042' => 'sgi', 'SEGI_16263' => 'sgi', 'SEGI_16552' => 'sgi', 'SEGI_24331' => 'sgi', 'SEGI_27316' => 'sgi', 'SEGI_29521' => 'sgi', 'SEGI_41342' => 'sgi', 'SGA_v2.0_scaffold27G11617' => 'sas', 'SGA_v2.0_scaffold316G48428' => 'sas', 'SGA_v2.0_scaffold49G18261' => 'sas', 'SGA_v2.0_scaffold7G03831' => 'sas', 'SGA_v2.0_scaffold93G28359' => 'sas', 'SHI02210' => 'shi', 'SHI06028' => 'shi', 'SHI06321' => 'shi', 'SMO111G0012' => 'smo', 'SMO228G0080' => 'smo', 'SMO356G0756' => 'smo', 'Solyc02g080620.3' => 'sly', 'Solyc06g074530.1' => 'sly', 'Solyc11g066890.1' => 'sly', 'Solyc11g072520.3' => 'sly', 'Sopen02g025330' => 'spe', 'Sopen06g031000' => 'spe', 'Sopen09g008240' => 'spe', 'Sopen09g025210' => 'spe', 'Sopen11g026600' => 'spe', 'Sopen11g030170' => 'spe', 'Sp1g10420' => 'spa', 'Sp3g06570' => 'spa', 'Sp4g10660' => 'spa', 'Sp5g16460' => 'spa', 'Sp6g22710' => 'spa', 'TAR365G0112' => 'tar', 'TAR369G0717' => 'tar', 'TAR374G0976' => 'tar', 'TAR623G1128' => 'tar', 'TAR626G1937' => 'tar', 'TAR627G0123' => 'tar', 'TAR628G0305' => 'tar', 'TAR636G1176' => 'tar', 'TAR636G2442' => 'tar', 'THA.LOC104800556' => 'tha', 'THA.LOC104809501' => 'tha', 'THA.LOC104815126' => 'tha', 'THA.LOC104815732' => 'tha', 'THA.LOC104823528' => 'tha', 'Thecc.02G365600' => 'tca', 'Thecc.06G222300' => 'tca', 'Thecc.09G261800' => 'tca', 'Thecc.09G291400' => 'tca', 'Thhalv10003028m.g' => 'esa', 'Thhalv10007886m.g' => 'esa', 'Thhalv10016085m.g' => 'esa', 'Thhalv10016681m.g' => 'esa', 'Thhalv10020951m.g' => 'esa', 'TPR.G15598' => 'tpr', 'TPR.G29305' => 'tpr', 'TPR.G32395' => 'tpr', 'TPR.G36998' => 'tpr', 'TPR.G4227' => 'tpr', 'TWI18G1433' => 'twi', 'TWI31G0755' => 'twi', 'TWI38G0912' => 'twi', 'TWI75G1097' => 'twi', 'TWI75G1619' => 'twi', 'TWI79G1336' => 'twi', 'unitig_0.g943' => 'ugi', 'unitig_0.g944' => 'ugi', 'unitig_22.g6646' => 'ugi', 'unitig_37.g12681' => 'ugi', 'unitig_8.g3290' => 'ugi', 'vmacro03278' => 'vma', 'vmacro12197' => 'vma', 'vmacro14478' => 'vma', 'vmacro15787' => 'vma', 'vmacro15789' => 'vma', 'vmacro15790' => 'vma', 'vmacro15806' => 'vma', 'vmacro22907' => 'vma', 'vmacro22908' => 'vma', 'vmacro22909' => 'vma', 'vmacro23108' => 'vma', 'VMungo0540G0540' => 'vmu', 'VMungo0540G2468' => 'vmu', 'VMungo1080G0390' => 'vmu', 'VMungo1080G1165' => 'vmu', 'VMungo1127G0170' => 'vmu', 'VMungo1127G2099' => 'vmu', 'VMungo1215G3013' => 'vmu', 'Zm00001eb013110' => 'zma', 'Zm00001eb084260' => 'zma', 'Zm00001eb096110' => 'zma', 'Zm00001eb217510' => 'zma', 'Zm00001eb322550' => 'zma', 'Zm00001eb390770' => 'zma', 'Zm00001eb397170' => 'zma', 'Zm00001eb404610' => 'zma', 'Zm00001eb421790' => 'zma' ), 'gf_id' => 'HOM05D000911', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000911' ), 'data_identifier' => 'HOM05D000911', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000911', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27780' => 'bna', 'A03p35380' => 'bna', 'A04p21160' => 'bna', 'A05p40570' => 'bna', 'A06p26900' => 'bna', 'A08p33230' => 'bna', 'A09p65960' => 'bna', 'A10p18290' => 'bna', 'Aa31LG1G12990' => 'aar', 'Aa31LG1G2980' => 'aar', 'Aa31LG4G14320' => 'aar', 'Aa31LG7G11800' => 'aar', 'Aa31sc36G50' => 'aar', 'Aa31sc36G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3721' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5459' => 'aag', 'Actinidia03028' => 'ach', 'Actinidia03753' => 'ach', 'Actinidia04187' => 'ach', 'Actinidia05509' => 'ach', 'Actinidia24180' => 'ach', 'Actinidia26906' => 'ach', 'Actinidia37097' => 'ach', 'Actinidia38249' => 'ach', 'Ah.01g003470' => 'amhyb', 'Ah.01g004580' => 'amhyb', 'Ah.01g014850' => 'amhyb', 'Ah.01g016830' => 'amhyb', 'Ah.14g088000' => 'amhyb', 'AL1G22980' => 'aly', 'AL3G18990' => 'aly', 'AL4G22440' => 'aly', 'AL4G33180' => 'aly', 'AL5G22920' => 'aly', 'AL6G33660' => 'aly', 'AL8G20720' => 'aly', 'Aqoxy1G00935' => 'aox', 'Aqoxy1G02094' => 'aox', 'Aqoxy2G01239' => 'aox', 'Aqoxy4G01870' => 'aox', 'Aqoxy7G00450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.36ZVTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71EM27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5D6C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH3WRE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3NCM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RIM768' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YB5YRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z36GDV' => 'arhy', 'AT1G08250' => 'ath', 'AT1G11790' => 'ath', 'AT2G27820' => 'ath', 'AT3G07630' => 'ath', 'AT3G44720' => 'ath', 'AT5G22630' => 'ath', 'ATR0693G304' => 'atr', 'ATR0794G109' => 'atr', 'ATR0820G120' => 'atr', 'ATR1159G064' => 'atr', 'Atru.chr10.2239' => 'acertr', 'Atru.chr3.3371' => 'acertr', 'Atru.chr6.3202' => 'acertr', 'AUR62006499' => 'cqu', 'AUR62012718' => 'cqu', 'AUR62021938' => 'cqu', 'AUR62023932' => 'cqu', 'AUR62025034' => 'cqu', 'AUR62025035' => 'cqu', 'AUR62038307' => 'cqu', 'AUR62043466' => 'cqu', 'BcaB02g10748' => 'bca', 'BcaB03g13231' => 'bca', 'BcaB03g14689' => 'bca', 'BcaB05g22716' => 'bca', 'BcaB06g28172' => 'bca', 'BcaB08g36413' => 'bca', 'BcaC01g02186' => 'bca', 'BcaC01g04272' => 'bca', 'BcaC02g08080' => 'bca', 'BcaC02g08227' => 'bca', 'BcaC03g13901' => 'bca', 'BcaC04g19593' => 'bca', 'BcaC04g20874' => 'bca', 'BcaC05g29557' => 'bca', 'BcaC06g35505' => 'bca', 'BcaC07g41954' => 'bca', 'BcaC07g41955' => 'bca', 'BcaC07g41956' => 'bca', 'BcaC07g42519' => 'bca', 'BcaC07g42520' => 'bca', 'BcaC07g42523' => 'bca', 'BcaC07g42524' => 'bca', 'BcaC07g42525' => 'bca', 'BcaC08g47480' => 'bca', 'BcaC08g47481' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00530' => 'bna', 'BolC2t07178H' => 'bol', 'BolC3t16567H' => 'bol', 'BolC4t27234H' => 'bol', 'BolC5t29728H' => 'bol', 'BolC5t34622H' => 'bol', 'BolC6t40321H' => 'bol', 'BolC7t42028H' => 'bol', 'BolC8t49125H' => 'bol', 'BolC8t52538H' => 'bol', 'BolC8t52539H' => 'bol', 'BolC9t56681H' => 'bol', 'BolC9t58266H' => 'bol', 'BolSC21t60294H' => 'bol', 'BraA02t05670Z' => 'bra', 'BraA03t12716Z' => 'bra', 'BraA04t17685Z' => 'bra', 'BraA05t22788Z' => 'bra', 'BraA06t24032Z' => 'bra', 'BraA06t25625Z' => 'bra', 'BraA07t27930Z' => 'bra', 'BraA08t35242Z' => 'bra', 'BraA09t38609Z' => 'bra', 'BraA10t43905Z' => 'bra', 'C02p11060' => 'bna', 'C03p42990' => 'bna', 'C03p67310' => 'bna', 'C04p56990' => 'bna', 'C04p58660' => 'bna', 'C05p09890' => 'bna', 'C05p59680' => 'bna', 'C06p19830' => 'bna', 'C06p53040' => 'bna', 'C07p15230' => 'bna', 'C08p50070' => 'bna', 'C08p50090' => 'bna', 'C09p38330' => 'bna', 'C09p53940' => 'bna', 'CAN.G1014.1' => 'can', 'CAN.G644.30' => 'can', 'CAN.G84.47' => 'can', 'CAN.G919.8' => 'can', 'CANSAT54G0113' => 'cansat', 'CANSAT54G1286' => 'cansat', 'CANSAT64G1020' => 'cansat', 'CARHR008080' => 'chi', 'CARHR008090' => 'chi', 'CARHR012130' => 'chi', 'CARHR038390' => 'chi', 'CARHR082330' => 'chi', 'CARHR120520' => 'chi', 'CARHR151470' => 'chi', 'CARHR190950' => 'chi', 'Carub.0001s0760' => 'cru', 'Carub.0001s1146' => 'cru', 'Carub.0003s0721' => 'cru', 'Carub.0004s0858' => 'cru', 'Carub.0005s1040' => 'cru', 'Carub.0006s2035' => 'cru', 'Carub.0015s0005' => 'cru', 'Ca_01607_v3' => 'car', 'Ca_01677_v3' => 'car', 'Ca_06087_v3' => 'car', 'Ca_19238_v3' => 'car', 'Ca_19373_v3' => 'car', 'Ca_21079_v3' => 'car', 'CBR_g54016' => 'cbr', 'CBR_g54018' => 'cbr', 'CBR_g54020' => 'cbr', 'Cc01_g09780' => 'ccan', 'Cc01_g11680' => 'ccan', 'Cc02_g15610' => 'ccan', 'Cc05_g04350' => 'ccan', 'Cc09_g01580' => 'ccan', 'CDE01G0795' => 'cde', 'CDE02G2024' => 'cde', 'CDE02G2260' => 'cde', 'CDE02G4561' => 'cde', 'CDE05G2733' => 'cde', 'CDE05G3422' => 'cde', 'CDE06G2003' => 'cde', 'CDE08G0576' => 'cde', 'CDE09G0048' => 'cde', 'CDE11G0805' => 'cde', 'Cfa003644' => 'cfa', 'Cfa006290' => 'cfa', 'Cfa010080' => 'cfa', 'Cfa011376' => 'cfa', 'Cfa011576' => 'cfa', 'Cfa011577' => 'cfa', 'Cfa014389' => 'cfa', 'Ciclev10006044m.g' => 'ccl', 'Ciclev10006954m.g' => 'ccl', 'Ciclev10015131m.g' => 'ccl', 'Ciclev10015580m.g' => 'ccl', 'Ciclev10028359m.g' => 'ccl', 'Ciclev10028573m.g' => 'ccl', 'CiPaw.03G159300' => 'cil', 'CiPaw.04G115100' => 'cil', 'CiPaw.09G092800' => 'cil', 'CiPaw.10G071800' => 'cil', 'CiPaw.13G105800' => 'cil', 'CiPaw.13G141000' => 'cil', 'CiPaw.14G103400' => 'cil', 'ClCG01G012700' => 'cla', 'ClCG01G012720' => 'cla', 'ClCG01G021920' => 'cla', 'ClCG02G008870' => 'cla', 'ClCG02G020840' => 'cla', 'ClCG02G021930' => 'cla', 'COL.COLO4_19302' => 'col', 'COL.COLO4_25262' => 'col', 'COL.COLO4_31788' => 'col', 'Cpa.g.c34684' => 'cpa', 'Cpa.g.c36520.1' => 'cpa', 'Cpa.g.c45626' => 'cpa', 'Cpa.g.sc121.17' => 'cpa', 'Cpa.g.sc13.22' => 'cpa', 'Cpa.g.sc87.88' => 'cpa', 'Cre06.g261800' => 'cre', 'CsaV3_1G014500' => 'csa', 'CsaV3_1G014510' => 'csa', 'CsaV3_2G034880' => 'csa', 'CsaV3_6G014760' => 'csa', 'CsaV3_6G021500' => 'csa', 'CsaV3_6G048980' => 'csa', 'CSS0002511' => 'camsi', 'CSS0007556' => 'camsi', 'CSS0008532' => 'camsi', 'CSS0009709' => 'camsi', 'CSS0010486' => 'camsi', 'CSS0016768' => 'camsi', 'CSS0023512' => 'camsi', 'CSS0025341' => 'camsi', 'CSS0027999' => 'camsi', 'CSS0028944' => 'camsi', 'CSS0032292' => 'camsi', 'CSS0032464' => 'camsi', 'CSS0037153' => 'camsi', 'CSS0039256' => 'camsi', 'CSS0048392' => 'camsi', 'CSS0050458' => 'camsi', 'DCAR_004224' => 'dca', 'DCAR_006147' => 'dca', 'DCAR_006465' => 'dca', 'DCAR_008159' => 'dca', 'DCAR_012164' => 'dca', 'DCAR_019764' => 'dca', 'Dinv05418' => 'din', 'Dinv10839' => 'din', 'Dinv12521' => 'din', 'Dinv13900' => 'din', 'Dinv29426' => 'din', 'Duzib150G0263' => 'dzi', 'Duzib168G1178' => 'dzi', 'Duzib168G1924' => 'dzi', 'Duzib170G0299' => 'dzi', 'Duzib170G0813' => 'dzi', 'Duzib235G1128' => 'dzi', 'Duzib248G1060' => 'dzi', 'ECA232G1910' => 'eca', 'ECA233G4621' => 'eca', 'ECA238G1216' => 'eca', 'ECA238G1784' => 'eca', 'ECA248G1242' => 'eca', 'EL10Ac8g20071' => 'bvu', 'EL10Ac9g21086' => 'bvu', 'EL10Ac9g22407' => 'bvu', 'EL10Ac9g22412' => 'bvu', 'Eucgr.A01119' => 'egr', 'Eucgr.E04043' => 'egr', 'Eucgr.J00428' => 'egr', 'Eucgr.J00958' => 'egr', 'FAN11G3091' => 'fan', 'FAN11G3651' => 'fan', 'FAN16G2566' => 'fan', 'FAN21G3155' => 'fan', 'FAN21G3400' => 'fan', 'FAN21G3543' => 'fan', 'FAN25G0234' => 'fan', 'FAN25G1422' => 'fan', 'FAN25G3392' => 'fan', 'FvH4_3g01940' => 'fve', 'FvH4_3g29870' => 'fve', 'FvH4_3g33680' => 'fve', 'Glyma.09G004200' => 'gma', 'Glyma.11G151288' => 'gma', 'Glyma.11G189100' => 'gma', 'Glyma.12G072500' => 'gma', 'Glyma.12G085500' => 'gma', 'Glyma.12G181800' => 'gma', 'Glyma.12G193000' => 'gma', 'Glyma.13G309300' => 'gma', 'Glyma.13G319000' => 'gma', 'Glyma.17G012600' => 'gma', 'Gohir.A06G148600' => 'ghi', 'Gohir.A07G115800' => 'ghi', 'Gohir.A08G003600' => 'ghi', 'Gohir.A09G093300' => 'ghi', 'Gohir.A09G105400' => 'ghi', 'Gohir.A09G105500' => 'ghi', 'Gohir.D06G154600' => 'ghi', 'Gohir.D07G120200' => 'ghi', 'Gohir.D08G013900' => 'ghi', 'Gohir.D09G093100' => 'ghi', 'Gohir.D09G102200' => 'ghi', 'Gohir.D09G102300' => 'ghi', 'Gorai.001G129400' => 'gra', 'Gorai.004G008200' => 'gra', 'Gorai.006G109800' => 'gra', 'Gorai.006G119500' => 'gra', 'Gorai.006G121300' => 'gra', 'Gorai.010G180700' => 'gra', 'GSVIVG01012716001' => 'vvi', 'GSVIVG01025118001' => 'vvi', 'GSVIVG01030439001' => 'vvi', 'GSVIVG01031397001' => 'vvi', 'HanXRQChr01g0004201' => 'han', 'HanXRQChr02g0054941' => 'han', 'HanXRQChr05g0141811' => 'han', 'HanXRQChr07g0197751' => 'han', 'HanXRQChr11g0346691' => 'han', 'HanXRQChr13g0396971' => 'han', 'HanXRQChr14g0432951' => 'han', 'HanXRQChr14g0452001' => 'han', 'HanXRQChr15g0496681' => 'han', 'HanXRQChr17g0557491' => 'han', 'HanXRQChr17g0557501' => 'han', 'Haze_06809' => 'cav', 'Haze_12852' => 'cav', 'Haze_15850' => 'cav', 'Haze_23446' => 'cav', 'Haze_23942' => 'cav', 'Haze_23943' => 'cav', 'Hma1.2p1_0091F.1_g046450' => 'hma', 'Hma1.2p1_0128F.1_g059910' => 'hma', 'Hma1.2p1_0249F.1_g102260' => 'hma', 'Hma1.2p1_0453F.1_g156190' => 'hma', 'Hma1.2p1_0695F.1_g204380' => 'hma', 'Hma1.2p1_0749F.1_g212650' => 'hma', 'Hma1.2p1_2156F.1_g315420' => 'hma', 'Hma1.2p1_2686F.1_g326940' => 'hma', 'HPP92_006428' => 'vpl', 'HPP92_012069' => 'vpl', 'HPP92_014129' => 'vpl', 'HPP92_014133' => 'vpl', 'HPP92_017315' => 'vpl', 'HPP92_026445' => 'vpl', 'HPP92_026446' => 'vpl', 'Hund00774' => 'sun', 'Hund07682' => 'sun', 'Hund21413' => 'sun', 'Hund23462' => 'sun', 'Hund23463' => 'sun', 'Lalb_Chr03g0027911' => 'lal', 'Lalb_Chr13g0304271' => 'lal', 'Lalb_Chr19g0137471' => 'lal', 'Lalb_Chr22g0350651' => 'lal', 'Lalb_Chr24g0395151' => 'lal', 'Lj1A1231T40' => 'lonja', 'Lj1A221T48' => 'lonja', 'Lj1C924T12' => 'lonja', 'Lj2C993G6' => 'lonja', 'Lj3g0005790' => 'lja', 'Lj3g0015432' => 'lja', 'Lj3g0017722' => 'lja', 'Lj3g0018497' => 'lja', 'Lj4g0025071' => 'lja', 'Lsat_1_v5_gn_1_129680' => 'lsa', 'Lsat_1_v5_gn_2_25321' => 'lsa', 'Lsat_1_v5_gn_2_95461' => 'lsa', 'Lsat_1_v5_gn_4_159620' => 'lsa', 'Lsat_1_v5_gn_6_41301' => 'lsa', 'Lsat_1_v5_gn_6_74660' => 'lsa', 'Lsat_1_v5_gn_7_11520' => 'lsa', 'Lsat_1_v5_gn_9_67680' => 'lsa', 'Manes.04G008300' => 'mes', 'Manes.04G008400' => 'mes', 'Manes.04G026500' => 'mes', 'Manes.10G135300' => 'mes', 'Manes.11G157300' => 'mes', 'Manes.12G074000' => 'mes', 'Manes.16G006200' => 'mes', 'Manes.17G026400' => 'mes', 'Mapoly0024s0086' => 'mpo', 'Mapoly0024s0087' => 'mpo', 'Mapoly0071s0057' => 'mpo', 'Mapoly0204s0012' => 'mpo', 'MBI04_g37681_MAGBIO' => 'mbi', 'MBI05_g17779_MAGBIO' => 'mbi', 'MBI12_g31184_MAGBIO' => 'mbi', 'MBI17_g11083_MAGBIO' => 'mbi', 'MBI18_g03883_MAGBIO' => 'mbi', 'MBI18_g28940_MAGBIO' => 'mbi', 'MCO01G690' => 'mco', 'MD03G1109900' => 'mdo', 'MD03G1134800' => 'mdo', 'MD05G1348000' => 'mdo', 'MD10G1322400' => 'mdo', 'MD11G1123300' => 'mdo', 'MD11G1157600' => 'mdo', 'Medtr2g084875' => 'mtr', 'Medtr2g088130' => 'mtr', 'Medtr4g055310' => 'mtr', 'Medtr4g061070' => 'mtr', 'Medtr4g132250' => 'mtr', 'MELO3C004795.2' => 'cme', 'MELO3C004797.2' => 'cme', 'MELO3C007396.2' => 'cme', 'MELO3C019277.2' => 'cme', 'MELO3C021449.2' => 'cme', 'MELO3C025736.2' => 'cme', 'Migut.D02175' => 'egut', 'Migut.H01573' => 'egut', 'Migut.M01327' => 'egut', 'Migut.N02513' => 'egut', 'MSTRG.14638' => 'ama', 'MSTRG.18632' => 'ama', 'MSTRG.7203' => 'ama', 'Nitab4.5_0000533g0140' => 'nta', 'Nitab4.5_0000888g0150' => 'nta', 'Nitab4.5_0001453g0040' => 'nta', 'Nitab4.5_0002827g0090' => 'nta', 'Nitab4.5_0003082g0040' => 'nta', 'Nitab4.5_0007799g0040' => 'nta', 'Nitab4.5_0008983g0010' => 'nta', 'Nitab4.5_0009017g0020' => 'nta', 'Nn1g02132' => 'nnu', 'Nn1g03492' => 'nnu', 'Nn1g03493' => 'nnu', 'Nn1g03494' => 'nnu', 'Nn1g07164' => 'nnu', 'Nn1g07291' => 'nnu', 'Nn2g10655' => 'nnu', 'Nn2g11652' => 'nnu', 'Nn2g14008' => 'nnu', 'Nn3g17476' => 'nnu', 'Nn3g17477' => 'nnu', 'Nn4g22370' => 'nnu', 'Nn4g25255' => 'nnu', 'Nn5g27755' => 'nnu', 'Nn6g34260' => 'nnu', 'Nn6g35041' => 'nnu', 'Oeu005924.1' => 'oeu', 'Oeu008383.1' => 'oeu', 'Oeu014928.1' => 'oeu', 'Oeu019889.1' => 'oeu', 'Oeu022271.1' => 'oeu', 'Oeu025271.1' => 'oeu', 'Oeu036302.1' => 'oeu', 'Oeu044100.1' => 'oeu', 'Os01g0528300' => 'osa', 'Os03g0286200' => 'osa', 'Os04g0406600' => 'osa', 'Os07g0512000' => 'osa', 'Os07g0694600' => 'osa', 'Os08g0411000' => 'osa', 'Os09g0565700' => 'osa', 'Os09g0566050' => 'osa', 'Os10g0523700' => 'osa', 'Peaxi162Scf00002g00514' => 'pax', 'Peaxi162Scf00047g01817' => 'pax', 'Peaxi162Scf00114g00001' => 'pax', 'Peaxi162Scf00147g00613' => 'pax', 'Peaxi162Scf00389g00425' => 'pax', 'PGR042G1139' => 'pgr', 'PGR042G3273' => 'pgr', 'PGR102G2180' => 'pgr', 'PGR119G0234' => 'pgr', 'PGR119G0668' => 'pgr', 'PGSC0003DMG400007122' => 'stu', 'PGSC0003DMG400016478' => 'stu', 'PGSC0003DMG400025374' => 'stu', 'PGSC0003DMG400026536' => 'stu', 'Phvul.003G079600' => 'pvu', 'Phvul.005G115600' => 'pvu', 'Phvul.005G127100' => 'pvu', 'Phvul.006G149500' => 'pvu', 'Phvul.006G149600' => 'pvu', 'Phvul.011G071800' => 'pvu', 'Phvul.011G090400' => 'pvu', 'Potri.004G013400' => 'ptr', 'Potri.004G188100' => 'ptr', 'Potri.008G195500' => 'ptr', 'Potri.009G148800' => 'ptr', 'Potri.011G004700' => 'ptr', 'Pp3c17_22810' => 'ppa', 'Pp3c18_4480' => 'ppa', 'Pp3c19_13030' => 'ppa', 'Pp3c1_33620' => 'ppa', 'Pp3c2_9380' => 'ppa', 'PRCOL_00001023' => 'pco', 'Prupe.3G216300' => 'ppe', 'Prupe.4G019500' => 'ppe', 'Prupe.6G092500' => 'ppe', 'Prupe.6G119200' => 'ppe', 'Psat0s1945g0080' => 'psa', 'Psat0s4167g0040' => 'psa', 'Psat1g185800' => 'psa', 'Psat4g006440' => 'psa', 'Psat4g006480' => 'psa', 'Psat4g168120' => 'psa', 'Psat5g255680' => 'psa', 'Psat5g261760' => 'psa', 'Psat7g222120' => 'psa', 'PSO063G7252' => 'pso', 'PSO170G4778' => 'pso', 'PSO210G2249' => 'pso', 'PSO339G2411' => 'pso', 'PSO339G2457' => 'pso', 'PSO339G2854' => 'pso', 'PSO339G4288' => 'pso', 'PSO339G4615' => 'pso', 'PSO384G2796' => 'pso', 'PSO384G2940' => 'pso', 'PSO384G4227' => 'pso', 'PSO478G1425' => 'pso', 'PSO541G3863' => 'pso', 'PSO675G0507' => 'pso', 'PSO782G0338' => 'pso', 'PSO832G0644' => 'pso', 'QL01p013664' => 'qlo', 'QL01p036598' => 'qlo', 'QL05p072984' => 'qlo', 'QL08p005768' => 'qlo', 'QL08p032743' => 'qlo', 'QL93p0073_0439' => 'qlo', 'QL93p0073_0444' => 'qlo', 'RcHm_v2.0_Chr5g0002851' => 'rch', 'RcHm_v2.0_Chr5g0055201' => 'rch', 'RcHm_v2.0_Chr5g0061191' => 'rch', 'RcHm_v2.0_Chr7g0203231' => 'rch', 'Rhsim01G0208100' => 'rsi', 'Rhsim01G0208200' => 'rsi', 'Rhsim02G0106500' => 'rsi', 'Rhsim03G0107900' => 'rsi', 'Rhsim06G0163400' => 'rsi', 'Rhsim13G0105200' => 'rsi', 'Sabra04G0006300' => 'sbr', 'Sabra04G0127000' => 'sbr', 'Sabra08G0148700' => 'sbr', 'Sabra09G0117400' => 'sbr', 'SalBow1G3326' => 'sbo', 'SalBow3G3228' => 'sbo', 'SalBow6G1634' => 'sbo', 'SalBow6G3603' => 'sbo', 'SalBow6G5266' => 'sbo', 'SalBow7G2265' => 'sbo', 'SalBow8G0850' => 'sbo', 'SalBow8G2592' => 'sbo', 'Sc05g0009240' => 'sci', 'Sc12g0002300' => 'sci', 'Sc21g0000100' => 'sci', 'Sc21g0004720' => 'sci', 'Sed0002949' => 'sed', 'Sed0004114' => 'sed', 'Sed0004306' => 'sed', 'Sed0006172' => 'sed', 'Sed0008413' => 'sed', 'Sed0013809' => 'sed', 'Sed0019556' => 'sed', 'SEGI_03570' => 'sgi', 'SEGI_07859' => 'sgi', 'SEGI_15042' => 'sgi', 'SEGI_16263' => 'sgi', 'SEGI_16552' => 'sgi', 'SEGI_24331' => 'sgi', 'SEGI_27316' => 'sgi', 'SEGI_29521' => 'sgi', 'SEGI_41342' => 'sgi', 'SGA_v2.0_scaffold27G11617' => 'sas', 'SGA_v2.0_scaffold316G48428' => 'sas', 'SGA_v2.0_scaffold49G18261' => 'sas', 'SGA_v2.0_scaffold7G03831' => 'sas', 'SGA_v2.0_scaffold93G28359' => 'sas', 'SHI02210' => 'shi', 'SHI06028' => 'shi', 'SHI06321' => 'shi', 'SMO111G0012' => 'smo', 'SMO228G0080' => 'smo', 'SMO356G0756' => 'smo', 'Solyc02g080620.3' => 'sly', 'Solyc06g074530.1' => 'sly', 'Solyc11g066890.1' => 'sly', 'Solyc11g072520.3' => 'sly', 'Sopen02g025330' => 'spe', 'Sopen06g031000' => 'spe', 'Sopen09g008240' => 'spe', 'Sopen09g025210' => 'spe', 'Sopen11g026600' => 'spe', 'Sopen11g030170' => 'spe', 'Sp1g10420' => 'spa', 'Sp3g06570' => 'spa', 'Sp4g10660' => 'spa', 'Sp5g16460' => 'spa', 'Sp6g22710' => 'spa', 'TAR365G0112' => 'tar', 'TAR369G0717' => 'tar', 'TAR374G0976' => 'tar', 'TAR623G1128' => 'tar', 'TAR626G1937' => 'tar', 'TAR627G0123' => 'tar', 'TAR628G0305' => 'tar', 'TAR636G1176' => 'tar', 'TAR636G2442' => 'tar', 'THA.LOC104800556' => 'tha', 'THA.LOC104809501' => 'tha', 'THA.LOC104815126' => 'tha', 'THA.LOC104815732' => 'tha', 'THA.LOC104823528' => 'tha', 'Thecc.02G365600' => 'tca', 'Thecc.06G222300' => 'tca', 'Thecc.09G261800' => 'tca', 'Thecc.09G291400' => 'tca', 'Thhalv10003028m.g' => 'esa', 'Thhalv10007886m.g' => 'esa', 'Thhalv10016085m.g' => 'esa', 'Thhalv10016681m.g' => 'esa', 'Thhalv10020951m.g' => 'esa', 'TPR.G15598' => 'tpr', 'TPR.G29305' => 'tpr', 'TPR.G32395' => 'tpr', 'TPR.G36998' => 'tpr', 'TPR.G4227' => 'tpr', 'TWI18G1433' => 'twi', 'TWI31G0755' => 'twi', 'TWI38G0912' => 'twi', 'TWI75G1097' => 'twi', 'TWI75G1619' => 'twi', 'TWI79G1336' => 'twi', 'unitig_0.g943' => 'ugi', 'unitig_0.g944' => 'ugi', 'unitig_22.g6646' => 'ugi', 'unitig_37.g12681' => 'ugi', 'unitig_8.g3290' => 'ugi', 'vmacro03278' => 'vma', 'vmacro12197' => 'vma', 'vmacro14478' => 'vma', 'vmacro15787' => 'vma', 'vmacro15789' => 'vma', 'vmacro15790' => 'vma', 'vmacro15806' => 'vma', 'vmacro22907' => 'vma', 'vmacro22908' => 'vma', 'vmacro22909' => 'vma', 'vmacro23108' => 'vma', 'VMungo0540G0540' => 'vmu', 'VMungo0540G2468' => 'vmu', 'VMungo1080G0390' => 'vmu', 'VMungo1080G1165' => 'vmu', 'VMungo1127G0170' => 'vmu', 'VMungo1127G2099' => 'vmu', 'VMungo1215G3013' => 'vmu', 'Zm00001eb013110' => 'zma', 'Zm00001eb084260' => 'zma', 'Zm00001eb096110' => 'zma', 'Zm00001eb217510' => 'zma', 'Zm00001eb322550' => 'zma', 'Zm00001eb390770' => 'zma', 'Zm00001eb397170' => 'zma', 'Zm00001eb404610' => 'zma', 'Zm00001eb421790' => 'zma' ) $gf_id = 'HOM05D000911' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000911' ) $data_identifier = 'HOM05D000911' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 16, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 5, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 6, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 8, 'nnu' => (int) 16, 'oeu' => (int) 8, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 5, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 16, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421790' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000911', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27780' => 'bna', 'A03p35380' => 'bna', 'A04p21160' => 'bna', 'A05p40570' => 'bna', 'A06p26900' => 'bna', 'A08p33230' => 'bna', 'A09p65960' => 'bna', 'A10p18290' => 'bna', 'Aa31LG1G12990' => 'aar', 'Aa31LG1G2980' => 'aar', 'Aa31LG4G14320' => 'aar', 'Aa31LG7G11800' => 'aar', 'Aa31sc36G50' => 'aar', 'Aa31sc36G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3721' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5459' => 'aag', 'Actinidia03028' => 'ach', 'Actinidia03753' => 'ach', 'Actinidia04187' => 'ach', 'Actinidia05509' => 'ach', 'Actinidia24180' => 'ach', 'Actinidia26906' => 'ach', 'Actinidia37097' => 'ach', 'Actinidia38249' => 'ach', 'Ah.01g003470' => 'amhyb', 'Ah.01g004580' => 'amhyb', 'Ah.01g014850' => 'amhyb', 'Ah.01g016830' => 'amhyb', 'Ah.14g088000' => 'amhyb', 'AL1G22980' => 'aly', 'AL3G18990' => 'aly', 'AL4G22440' => 'aly', 'AL4G33180' => 'aly', 'AL5G22920' => 'aly', 'AL6G33660' => 'aly', 'AL8G20720' => 'aly', 'Aqoxy1G00935' => 'aox', 'Aqoxy1G02094' => 'aox', 'Aqoxy2G01239' => 'aox', 'Aqoxy4G01870' => 'aox', 'Aqoxy7G00450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.36ZVTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71EM27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5D6C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH3WRE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3NCM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RIM768' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YB5YRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z36GDV' => 'arhy', 'AT1G08250' => 'ath', 'AT1G11790' => 'ath', 'AT2G27820' => 'ath', 'AT3G07630' => 'ath', 'AT3G44720' => 'ath', 'AT5G22630' => 'ath', 'ATR0693G304' => 'atr', 'ATR0794G109' => 'atr', 'ATR0820G120' => 'atr', 'ATR1159G064' => 'atr', 'Atru.chr10.2239' => 'acertr', 'Atru.chr3.3371' => 'acertr', 'Atru.chr6.3202' => 'acertr', 'AUR62006499' => 'cqu', 'AUR62012718' => 'cqu', 'AUR62021938' => 'cqu', 'AUR62023932' => 'cqu', 'AUR62025034' => 'cqu', 'AUR62025035' => 'cqu', 'AUR62038307' => 'cqu', 'AUR62043466' => 'cqu', 'BcaB02g10748' => 'bca', 'BcaB03g13231' => 'bca', 'BcaB03g14689' => 'bca', 'BcaB05g22716' => 'bca', 'BcaB06g28172' => 'bca', 'BcaB08g36413' => 'bca', 'BcaC01g02186' => 'bca', 'BcaC01g04272' => 'bca', 'BcaC02g08080' => 'bca', 'BcaC02g08227' => 'bca', 'BcaC03g13901' => 'bca', 'BcaC04g19593' => 'bca', 'BcaC04g20874' => 'bca', 'BcaC05g29557' => 'bca', 'BcaC06g35505' => 'bca', 'BcaC07g41954' => 'bca', 'BcaC07g41955' => 'bca', 'BcaC07g41956' => 'bca', 'BcaC07g42519' => 'bca', 'BcaC07g42520' => 'bca', 'BcaC07g42523' => 'bca', 'BcaC07g42524' => 'bca', 'BcaC07g42525' => 'bca', 'BcaC08g47480' => 'bca', 'BcaC08g47481' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00530' => 'bna', 'BolC2t07178H' => 'bol', 'BolC3t16567H' => 'bol', 'BolC4t27234H' => 'bol', 'BolC5t29728H' => 'bol', 'BolC5t34622H' => 'bol', 'BolC6t40321H' => 'bol', 'BolC7t42028H' => 'bol', 'BolC8t49125H' => 'bol', 'BolC8t52538H' => 'bol', 'BolC8t52539H' => 'bol', 'BolC9t56681H' => 'bol', 'BolC9t58266H' => 'bol', 'BolSC21t60294H' => 'bol', 'BraA02t05670Z' => 'bra', 'BraA03t12716Z' => 'bra', 'BraA04t17685Z' => 'bra', 'BraA05t22788Z' => 'bra', 'BraA06t24032Z' => 'bra', 'BraA06t25625Z' => 'bra', 'BraA07t27930Z' => 'bra', 'BraA08t35242Z' => 'bra', 'BraA09t38609Z' => 'bra', 'BraA10t43905Z' => 'bra', 'C02p11060' => 'bna', 'C03p42990' => 'bna', 'C03p67310' => 'bna', 'C04p56990' => 'bna', 'C04p58660' => 'bna', 'C05p09890' => 'bna', 'C05p59680' => 'bna', 'C06p19830' => 'bna', 'C06p53040' => 'bna', 'C07p15230' => 'bna', 'C08p50070' => 'bna', 'C08p50090' => 'bna', 'C09p38330' => 'bna', 'C09p53940' => 'bna', 'CAN.G1014.1' => 'can', 'CAN.G644.30' => 'can', 'CAN.G84.47' => 'can', 'CAN.G919.8' => 'can', 'CANSAT54G0113' => 'cansat', 'CANSAT54G1286' => 'cansat', 'CANSAT64G1020' => 'cansat', 'CARHR008080' => 'chi', 'CARHR008090' => 'chi', 'CARHR012130' => 'chi', 'CARHR038390' => 'chi', 'CARHR082330' => 'chi', 'CARHR120520' => 'chi', 'CARHR151470' => 'chi', 'CARHR190950' => 'chi', 'Carub.0001s0760' => 'cru', 'Carub.0001s1146' => 'cru', 'Carub.0003s0721' => 'cru', 'Carub.0004s0858' => 'cru', 'Carub.0005s1040' => 'cru', 'Carub.0006s2035' => 'cru', 'Carub.0015s0005' => 'cru', 'Ca_01607_v3' => 'car', 'Ca_01677_v3' => 'car', 'Ca_06087_v3' => 'car', 'Ca_19238_v3' => 'car', 'Ca_19373_v3' => 'car', 'Ca_21079_v3' => 'car', 'CBR_g54016' => 'cbr', 'CBR_g54018' => 'cbr', 'CBR_g54020' => 'cbr', 'Cc01_g09780' => 'ccan', 'Cc01_g11680' => 'ccan', 'Cc02_g15610' => 'ccan', 'Cc05_g04350' => 'ccan', 'Cc09_g01580' => 'ccan', 'CDE01G0795' => 'cde', 'CDE02G2024' => 'cde', 'CDE02G2260' => 'cde', 'CDE02G4561' => 'cde', 'CDE05G2733' => 'cde', 'CDE05G3422' => 'cde', 'CDE06G2003' => 'cde', 'CDE08G0576' => 'cde', 'CDE09G0048' => 'cde', 'CDE11G0805' => 'cde', 'Cfa003644' => 'cfa', 'Cfa006290' => 'cfa', 'Cfa010080' => 'cfa', 'Cfa011376' => 'cfa', 'Cfa011576' => 'cfa', 'Cfa011577' => 'cfa', 'Cfa014389' => 'cfa', 'Ciclev10006044m.g' => 'ccl', 'Ciclev10006954m.g' => 'ccl', 'Ciclev10015131m.g' => 'ccl', 'Ciclev10015580m.g' => 'ccl', 'Ciclev10028359m.g' => 'ccl', 'Ciclev10028573m.g' => 'ccl', 'CiPaw.03G159300' => 'cil', 'CiPaw.04G115100' => 'cil', 'CiPaw.09G092800' => 'cil', 'CiPaw.10G071800' => 'cil', 'CiPaw.13G105800' => 'cil', 'CiPaw.13G141000' => 'cil', 'CiPaw.14G103400' => 'cil', 'ClCG01G012700' => 'cla', 'ClCG01G012720' => 'cla', 'ClCG01G021920' => 'cla', 'ClCG02G008870' => 'cla', 'ClCG02G020840' => 'cla', 'ClCG02G021930' => 'cla', 'COL.COLO4_19302' => 'col', 'COL.COLO4_25262' => 'col', 'COL.COLO4_31788' => 'col', 'Cpa.g.c34684' => 'cpa', 'Cpa.g.c36520.1' => 'cpa', 'Cpa.g.c45626' => 'cpa', 'Cpa.g.sc121.17' => 'cpa', 'Cpa.g.sc13.22' => 'cpa', 'Cpa.g.sc87.88' => 'cpa', 'Cre06.g261800' => 'cre', 'CsaV3_1G014500' => 'csa', 'CsaV3_1G014510' => 'csa', 'CsaV3_2G034880' => 'csa', 'CsaV3_6G014760' => 'csa', 'CsaV3_6G021500' => 'csa', 'CsaV3_6G048980' => 'csa', 'CSS0002511' => 'camsi', 'CSS0007556' => 'camsi', 'CSS0008532' => 'camsi', 'CSS0009709' => 'camsi', 'CSS0010486' => 'camsi', 'CSS0016768' => 'camsi', 'CSS0023512' => 'camsi', 'CSS0025341' => 'camsi', 'CSS0027999' => 'camsi', 'CSS0028944' => 'camsi', 'CSS0032292' => 'camsi', 'CSS0032464' => 'camsi', 'CSS0037153' => 'camsi', 'CSS0039256' => 'camsi', 'CSS0048392' => 'camsi', 'CSS0050458' => 'camsi', 'DCAR_004224' => 'dca', 'DCAR_006147' => 'dca', 'DCAR_006465' => 'dca', 'DCAR_008159' => 'dca', 'DCAR_012164' => 'dca', 'DCAR_019764' => 'dca', 'Dinv05418' => 'din', 'Dinv10839' => 'din', 'Dinv12521' => 'din', 'Dinv13900' => 'din', 'Dinv29426' => 'din', 'Duzib150G0263' => 'dzi', 'Duzib168G1178' => 'dzi', 'Duzib168G1924' => 'dzi', 'Duzib170G0299' => 'dzi', 'Duzib170G0813' => 'dzi', 'Duzib235G1128' => 'dzi', 'Duzib248G1060' => 'dzi', 'ECA232G1910' => 'eca', 'ECA233G4621' => 'eca', 'ECA238G1216' => 'eca', 'ECA238G1784' => 'eca', 'ECA248G1242' => 'eca', 'EL10Ac8g20071' => 'bvu', 'EL10Ac9g21086' => 'bvu', 'EL10Ac9g22407' => 'bvu', 'EL10Ac9g22412' => 'bvu', 'Eucgr.A01119' => 'egr', 'Eucgr.E04043' => 'egr', 'Eucgr.J00428' => 'egr', 'Eucgr.J00958' => 'egr', 'FAN11G3091' => 'fan', 'FAN11G3651' => 'fan', 'FAN16G2566' => 'fan', 'FAN21G3155' => 'fan', 'FAN21G3400' => 'fan', 'FAN21G3543' => 'fan', 'FAN25G0234' => 'fan', 'FAN25G1422' => 'fan', 'FAN25G3392' => 'fan', 'FvH4_3g01940' => 'fve', 'FvH4_3g29870' => 'fve', 'FvH4_3g33680' => 'fve', 'Glyma.09G004200' => 'gma', 'Glyma.11G151288' => 'gma', 'Glyma.11G189100' => 'gma', 'Glyma.12G072500' => 'gma', 'Glyma.12G085500' => 'gma', 'Glyma.12G181800' => 'gma', 'Glyma.12G193000' => 'gma', 'Glyma.13G309300' => 'gma', 'Glyma.13G319000' => 'gma', 'Glyma.17G012600' => 'gma', 'Gohir.A06G148600' => 'ghi', 'Gohir.A07G115800' => 'ghi', 'Gohir.A08G003600' => 'ghi', 'Gohir.A09G093300' => 'ghi', 'Gohir.A09G105400' => 'ghi', 'Gohir.A09G105500' => 'ghi', 'Gohir.D06G154600' => 'ghi', 'Gohir.D07G120200' => 'ghi', 'Gohir.D08G013900' => 'ghi', 'Gohir.D09G093100' => 'ghi', 'Gohir.D09G102200' => 'ghi', 'Gohir.D09G102300' => 'ghi', 'Gorai.001G129400' => 'gra', 'Gorai.004G008200' => 'gra', 'Gorai.006G109800' => 'gra', 'Gorai.006G119500' => 'gra', 'Gorai.006G121300' => 'gra', 'Gorai.010G180700' => 'gra', 'GSVIVG01012716001' => 'vvi', 'GSVIVG01025118001' => 'vvi', 'GSVIVG01030439001' => 'vvi', 'GSVIVG01031397001' => 'vvi', 'HanXRQChr01g0004201' => 'han', 'HanXRQChr02g0054941' => 'han', 'HanXRQChr05g0141811' => 'han', 'HanXRQChr07g0197751' => 'han', 'HanXRQChr11g0346691' => 'han', 'HanXRQChr13g0396971' => 'han', 'HanXRQChr14g0432951' => 'han', 'HanXRQChr14g0452001' => 'han', 'HanXRQChr15g0496681' => 'han', 'HanXRQChr17g0557491' => 'han', 'HanXRQChr17g0557501' => 'han', 'Haze_06809' => 'cav', 'Haze_12852' => 'cav', 'Haze_15850' => 'cav', 'Haze_23446' => 'cav', 'Haze_23942' => 'cav', 'Haze_23943' => 'cav', 'Hma1.2p1_0091F.1_g046450' => 'hma', 'Hma1.2p1_0128F.1_g059910' => 'hma', 'Hma1.2p1_0249F.1_g102260' => 'hma', 'Hma1.2p1_0453F.1_g156190' => 'hma', 'Hma1.2p1_0695F.1_g204380' => 'hma', 'Hma1.2p1_0749F.1_g212650' => 'hma', 'Hma1.2p1_2156F.1_g315420' => 'hma', 'Hma1.2p1_2686F.1_g326940' => 'hma', 'HPP92_006428' => 'vpl', 'HPP92_012069' => 'vpl', 'HPP92_014129' => 'vpl', 'HPP92_014133' => 'vpl', 'HPP92_017315' => 'vpl', 'HPP92_026445' => 'vpl', 'HPP92_026446' => 'vpl', 'Hund00774' => 'sun', 'Hund07682' => 'sun', 'Hund21413' => 'sun', 'Hund23462' => 'sun', 'Hund23463' => 'sun', 'Lalb_Chr03g0027911' => 'lal', 'Lalb_Chr13g0304271' => 'lal', 'Lalb_Chr19g0137471' => 'lal', 'Lalb_Chr22g0350651' => 'lal', 'Lalb_Chr24g0395151' => 'lal', 'Lj1A1231T40' => 'lonja', 'Lj1A221T48' => 'lonja', 'Lj1C924T12' => 'lonja', 'Lj2C993G6' => 'lonja', 'Lj3g0005790' => 'lja', 'Lj3g0015432' => 'lja', 'Lj3g0017722' => 'lja', 'Lj3g0018497' => 'lja', 'Lj4g0025071' => 'lja', 'Lsat_1_v5_gn_1_129680' => 'lsa', 'Lsat_1_v5_gn_2_25321' => 'lsa', 'Lsat_1_v5_gn_2_95461' => 'lsa', 'Lsat_1_v5_gn_4_159620' => 'lsa', 'Lsat_1_v5_gn_6_41301' => 'lsa', 'Lsat_1_v5_gn_6_74660' => 'lsa', 'Lsat_1_v5_gn_7_11520' => 'lsa', 'Lsat_1_v5_gn_9_67680' => 'lsa', 'Manes.04G008300' => 'mes', 'Manes.04G008400' => 'mes', 'Manes.04G026500' => 'mes', 'Manes.10G135300' => 'mes', 'Manes.11G157300' => 'mes', 'Manes.12G074000' => 'mes', 'Manes.16G006200' => 'mes', 'Manes.17G026400' => 'mes', 'Mapoly0024s0086' => 'mpo', 'Mapoly0024s0087' => 'mpo', 'Mapoly0071s0057' => 'mpo', 'Mapoly0204s0012' => 'mpo', 'MBI04_g37681_MAGBIO' => 'mbi', 'MBI05_g17779_MAGBIO' => 'mbi', 'MBI12_g31184_MAGBIO' => 'mbi', 'MBI17_g11083_MAGBIO' => 'mbi', 'MBI18_g03883_MAGBIO' => 'mbi', 'MBI18_g28940_MAGBIO' => 'mbi', 'MCO01G690' => 'mco', 'MD03G1109900' => 'mdo', 'MD03G1134800' => 'mdo', 'MD05G1348000' => 'mdo', 'MD10G1322400' => 'mdo', 'MD11G1123300' => 'mdo', 'MD11G1157600' => 'mdo', 'Medtr2g084875' => 'mtr', 'Medtr2g088130' => 'mtr', 'Medtr4g055310' => 'mtr', 'Medtr4g061070' => 'mtr', 'Medtr4g132250' => 'mtr', 'MELO3C004795.2' => 'cme', 'MELO3C004797.2' => 'cme', 'MELO3C007396.2' => 'cme', 'MELO3C019277.2' => 'cme', 'MELO3C021449.2' => 'cme', 'MELO3C025736.2' => 'cme', 'Migut.D02175' => 'egut', 'Migut.H01573' => 'egut', 'Migut.M01327' => 'egut', 'Migut.N02513' => 'egut', 'MSTRG.14638' => 'ama', 'MSTRG.18632' => 'ama', 'MSTRG.7203' => 'ama', 'Nitab4.5_0000533g0140' => 'nta', 'Nitab4.5_0000888g0150' => 'nta', 'Nitab4.5_0001453g0040' => 'nta', 'Nitab4.5_0002827g0090' => 'nta', 'Nitab4.5_0003082g0040' => 'nta', 'Nitab4.5_0007799g0040' => 'nta', 'Nitab4.5_0008983g0010' => 'nta', 'Nitab4.5_0009017g0020' => 'nta', 'Nn1g02132' => 'nnu', 'Nn1g03492' => 'nnu', 'Nn1g03493' => 'nnu', 'Nn1g03494' => 'nnu', 'Nn1g07164' => 'nnu', 'Nn1g07291' => 'nnu', 'Nn2g10655' => 'nnu', 'Nn2g11652' => 'nnu', 'Nn2g14008' => 'nnu', 'Nn3g17476' => 'nnu', 'Nn3g17477' => 'nnu', 'Nn4g22370' => 'nnu', 'Nn4g25255' => 'nnu', 'Nn5g27755' => 'nnu', 'Nn6g34260' => 'nnu', 'Nn6g35041' => 'nnu', 'Oeu005924.1' => 'oeu', 'Oeu008383.1' => 'oeu', 'Oeu014928.1' => 'oeu', 'Oeu019889.1' => 'oeu', 'Oeu022271.1' => 'oeu', 'Oeu025271.1' => 'oeu', 'Oeu036302.1' => 'oeu', 'Oeu044100.1' => 'oeu', 'Os01g0528300' => 'osa', 'Os03g0286200' => 'osa', 'Os04g0406600' => 'osa', 'Os07g0512000' => 'osa', 'Os07g0694600' => 'osa', 'Os08g0411000' => 'osa', 'Os09g0565700' => 'osa', 'Os09g0566050' => 'osa', 'Os10g0523700' => 'osa', 'Peaxi162Scf00002g00514' => 'pax', 'Peaxi162Scf00047g01817' => 'pax', 'Peaxi162Scf00114g00001' => 'pax', 'Peaxi162Scf00147g00613' => 'pax', 'Peaxi162Scf00389g00425' => 'pax', 'PGR042G1139' => 'pgr', 'PGR042G3273' => 'pgr', 'PGR102G2180' => 'pgr', 'PGR119G0234' => 'pgr', 'PGR119G0668' => 'pgr', 'PGSC0003DMG400007122' => 'stu', 'PGSC0003DMG400016478' => 'stu', 'PGSC0003DMG400025374' => 'stu', 'PGSC0003DMG400026536' => 'stu', 'Phvul.003G079600' => 'pvu', 'Phvul.005G115600' => 'pvu', 'Phvul.005G127100' => 'pvu', 'Phvul.006G149500' => 'pvu', 'Phvul.006G149600' => 'pvu', 'Phvul.011G071800' => 'pvu', 'Phvul.011G090400' => 'pvu', 'Potri.004G013400' => 'ptr', 'Potri.004G188100' => 'ptr', 'Potri.008G195500' => 'ptr', 'Potri.009G148800' => 'ptr', 'Potri.011G004700' => 'ptr', 'Pp3c17_22810' => 'ppa', 'Pp3c18_4480' => 'ppa', 'Pp3c19_13030' => 'ppa', 'Pp3c1_33620' => 'ppa', 'Pp3c2_9380' => 'ppa', 'PRCOL_00001023' => 'pco', 'Prupe.3G216300' => 'ppe', 'Prupe.4G019500' => 'ppe', 'Prupe.6G092500' => 'ppe', 'Prupe.6G119200' => 'ppe', 'Psat0s1945g0080' => 'psa', 'Psat0s4167g0040' => 'psa', 'Psat1g185800' => 'psa', 'Psat4g006440' => 'psa', 'Psat4g006480' => 'psa', 'Psat4g168120' => 'psa', 'Psat5g255680' => 'psa', 'Psat5g261760' => 'psa', 'Psat7g222120' => 'psa', 'PSO063G7252' => 'pso', 'PSO170G4778' => 'pso', 'PSO210G2249' => 'pso', 'PSO339G2411' => 'pso', 'PSO339G2457' => 'pso', 'PSO339G2854' => 'pso', 'PSO339G4288' => 'pso', 'PSO339G4615' => 'pso', 'PSO384G2796' => 'pso', 'PSO384G2940' => 'pso', 'PSO384G4227' => 'pso', 'PSO478G1425' => 'pso', 'PSO541G3863' => 'pso', 'PSO675G0507' => 'pso', 'PSO782G0338' => 'pso', 'PSO832G0644' => 'pso', 'QL01p013664' => 'qlo', 'QL01p036598' => 'qlo', 'QL05p072984' => 'qlo', 'QL08p005768' => 'qlo', 'QL08p032743' => 'qlo', 'QL93p0073_0439' => 'qlo', 'QL93p0073_0444' => 'qlo', 'RcHm_v2.0_Chr5g0002851' => 'rch', 'RcHm_v2.0_Chr5g0055201' => 'rch', 'RcHm_v2.0_Chr5g0061191' => 'rch', 'RcHm_v2.0_Chr7g0203231' => 'rch', 'Rhsim01G0208100' => 'rsi', 'Rhsim01G0208200' => 'rsi', 'Rhsim02G0106500' => 'rsi', 'Rhsim03G0107900' => 'rsi', 'Rhsim06G0163400' => 'rsi', 'Rhsim13G0105200' => 'rsi', 'Sabra04G0006300' => 'sbr', 'Sabra04G0127000' => 'sbr', 'Sabra08G0148700' => 'sbr', 'Sabra09G0117400' => 'sbr', 'SalBow1G3326' => 'sbo', 'SalBow3G3228' => 'sbo', 'SalBow6G1634' => 'sbo', 'SalBow6G3603' => 'sbo', 'SalBow6G5266' => 'sbo', 'SalBow7G2265' => 'sbo', 'SalBow8G0850' => 'sbo', 'SalBow8G2592' => 'sbo', 'Sc05g0009240' => 'sci', 'Sc12g0002300' => 'sci', 'Sc21g0000100' => 'sci', 'Sc21g0004720' => 'sci', 'Sed0002949' => 'sed', 'Sed0004114' => 'sed', 'Sed0004306' => 'sed', 'Sed0006172' => 'sed', 'Sed0008413' => 'sed', 'Sed0013809' => 'sed', 'Sed0019556' => 'sed', 'SEGI_03570' => 'sgi', 'SEGI_07859' => 'sgi', 'SEGI_15042' => 'sgi', 'SEGI_16263' => 'sgi', 'SEGI_16552' => 'sgi', 'SEGI_24331' => 'sgi', 'SEGI_27316' => 'sgi', 'SEGI_29521' => 'sgi', 'SEGI_41342' => 'sgi', 'SGA_v2.0_scaffold27G11617' => 'sas', 'SGA_v2.0_scaffold316G48428' => 'sas', 'SGA_v2.0_scaffold49G18261' => 'sas', 'SGA_v2.0_scaffold7G03831' => 'sas', 'SGA_v2.0_scaffold93G28359' => 'sas', 'SHI02210' => 'shi', 'SHI06028' => 'shi', 'SHI06321' => 'shi', 'SMO111G0012' => 'smo', 'SMO228G0080' => 'smo', 'SMO356G0756' => 'smo', 'Solyc02g080620.3' => 'sly', 'Solyc06g074530.1' => 'sly', 'Solyc11g066890.1' => 'sly', 'Solyc11g072520.3' => 'sly', 'Sopen02g025330' => 'spe', 'Sopen06g031000' => 'spe', 'Sopen09g008240' => 'spe', 'Sopen09g025210' => 'spe', 'Sopen11g026600' => 'spe', 'Sopen11g030170' => 'spe', 'Sp1g10420' => 'spa', 'Sp3g06570' => 'spa', 'Sp4g10660' => 'spa', 'Sp5g16460' => 'spa', 'Sp6g22710' => 'spa', 'TAR365G0112' => 'tar', 'TAR369G0717' => 'tar', 'TAR374G0976' => 'tar', 'TAR623G1128' => 'tar', 'TAR626G1937' => 'tar', 'TAR627G0123' => 'tar', 'TAR628G0305' => 'tar', 'TAR636G1176' => 'tar', 'TAR636G2442' => 'tar', 'THA.LOC104800556' => 'tha', 'THA.LOC104809501' => 'tha', 'THA.LOC104815126' => 'tha', 'THA.LOC104815732' => 'tha', 'THA.LOC104823528' => 'tha', 'Thecc.02G365600' => 'tca', 'Thecc.06G222300' => 'tca', 'Thecc.09G261800' => 'tca', 'Thecc.09G291400' => 'tca', 'Thhalv10003028m.g' => 'esa', 'Thhalv10007886m.g' => 'esa', 'Thhalv10016085m.g' => 'esa', 'Thhalv10016681m.g' => 'esa', 'Thhalv10020951m.g' => 'esa', 'TPR.G15598' => 'tpr', 'TPR.G29305' => 'tpr', 'TPR.G32395' => 'tpr', 'TPR.G36998' => 'tpr', 'TPR.G4227' => 'tpr', 'TWI18G1433' => 'twi', 'TWI31G0755' => 'twi', 'TWI38G0912' => 'twi', 'TWI75G1097' => 'twi', 'TWI75G1619' => 'twi', 'TWI79G1336' => 'twi', 'unitig_0.g943' => 'ugi', 'unitig_0.g944' => 'ugi', 'unitig_22.g6646' => 'ugi', 'unitig_37.g12681' => 'ugi', 'unitig_8.g3290' => 'ugi', 'vmacro03278' => 'vma', 'vmacro12197' => 'vma', 'vmacro14478' => 'vma', 'vmacro15787' => 'vma', 'vmacro15789' => 'vma', 'vmacro15790' => 'vma', 'vmacro15806' => 'vma', 'vmacro22907' => 'vma', 'vmacro22908' => 'vma', 'vmacro22909' => 'vma', 'vmacro23108' => 'vma', 'VMungo0540G0540' => 'vmu', 'VMungo0540G2468' => 'vmu', 'VMungo1080G0390' => 'vmu', 'VMungo1080G1165' => 'vmu', 'VMungo1127G0170' => 'vmu', 'VMungo1127G2099' => 'vmu', 'VMungo1215G3013' => 'vmu', 'Zm00001eb013110' => 'zma', 'Zm00001eb084260' => 'zma', 'Zm00001eb096110' => 'zma', 'Zm00001eb217510' => 'zma', 'Zm00001eb322550' => 'zma', 'Zm00001eb390770' => 'zma', 'Zm00001eb397170' => 'zma', 'Zm00001eb404610' => 'zma', 'Zm00001eb421790' => 'zma' ), 'gf_id' => 'HOM05D000911', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000911' ), 'data_identifier' => 'HOM05D000911', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000911', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27780' => 'bna', 'A03p35380' => 'bna', 'A04p21160' => 'bna', 'A05p40570' => 'bna', 'A06p26900' => 'bna', 'A08p33230' => 'bna', 'A09p65960' => 'bna', 'A10p18290' => 'bna', 'Aa31LG1G12990' => 'aar', 'Aa31LG1G2980' => 'aar', 'Aa31LG4G14320' => 'aar', 'Aa31LG7G11800' => 'aar', 'Aa31sc36G50' => 'aar', 'Aa31sc36G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3721' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5459' => 'aag', 'Actinidia03028' => 'ach', 'Actinidia03753' => 'ach', 'Actinidia04187' => 'ach', 'Actinidia05509' => 'ach', 'Actinidia24180' => 'ach', 'Actinidia26906' => 'ach', 'Actinidia37097' => 'ach', 'Actinidia38249' => 'ach', 'Ah.01g003470' => 'amhyb', 'Ah.01g004580' => 'amhyb', 'Ah.01g014850' => 'amhyb', 'Ah.01g016830' => 'amhyb', 'Ah.14g088000' => 'amhyb', 'AL1G22980' => 'aly', 'AL3G18990' => 'aly', 'AL4G22440' => 'aly', 'AL4G33180' => 'aly', 'AL5G22920' => 'aly', 'AL6G33660' => 'aly', 'AL8G20720' => 'aly', 'Aqoxy1G00935' => 'aox', 'Aqoxy1G02094' => 'aox', 'Aqoxy2G01239' => 'aox', 'Aqoxy4G01870' => 'aox', 'Aqoxy7G00450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.36ZVTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71EM27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5D6C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH3WRE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3NCM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RIM768' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YB5YRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z36GDV' => 'arhy', 'AT1G08250' => 'ath', 'AT1G11790' => 'ath', 'AT2G27820' => 'ath', 'AT3G07630' => 'ath', 'AT3G44720' => 'ath', 'AT5G22630' => 'ath', 'ATR0693G304' => 'atr', 'ATR0794G109' => 'atr', 'ATR0820G120' => 'atr', 'ATR1159G064' => 'atr', 'Atru.chr10.2239' => 'acertr', 'Atru.chr3.3371' => 'acertr', 'Atru.chr6.3202' => 'acertr', 'AUR62006499' => 'cqu', 'AUR62012718' => 'cqu', 'AUR62021938' => 'cqu', 'AUR62023932' => 'cqu', 'AUR62025034' => 'cqu', 'AUR62025035' => 'cqu', 'AUR62038307' => 'cqu', 'AUR62043466' => 'cqu', 'BcaB02g10748' => 'bca', 'BcaB03g13231' => 'bca', 'BcaB03g14689' => 'bca', 'BcaB05g22716' => 'bca', 'BcaB06g28172' => 'bca', 'BcaB08g36413' => 'bca', 'BcaC01g02186' => 'bca', 'BcaC01g04272' => 'bca', 'BcaC02g08080' => 'bca', 'BcaC02g08227' => 'bca', 'BcaC03g13901' => 'bca', 'BcaC04g19593' => 'bca', 'BcaC04g20874' => 'bca', 'BcaC05g29557' => 'bca', 'BcaC06g35505' => 'bca', 'BcaC07g41954' => 'bca', 'BcaC07g41955' => 'bca', 'BcaC07g41956' => 'bca', 'BcaC07g42519' => 'bca', 'BcaC07g42520' => 'bca', 'BcaC07g42523' => 'bca', 'BcaC07g42524' => 'bca', 'BcaC07g42525' => 'bca', 'BcaC08g47480' => 'bca', 'BcaC08g47481' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00530' => 'bna', 'BolC2t07178H' => 'bol', 'BolC3t16567H' => 'bol', 'BolC4t27234H' => 'bol', 'BolC5t29728H' => 'bol', 'BolC5t34622H' => 'bol', 'BolC6t40321H' => 'bol', 'BolC7t42028H' => 'bol', 'BolC8t49125H' => 'bol', 'BolC8t52538H' => 'bol', 'BolC8t52539H' => 'bol', 'BolC9t56681H' => 'bol', 'BolC9t58266H' => 'bol', 'BolSC21t60294H' => 'bol', 'BraA02t05670Z' => 'bra', 'BraA03t12716Z' => 'bra', 'BraA04t17685Z' => 'bra', 'BraA05t22788Z' => 'bra', 'BraA06t24032Z' => 'bra', 'BraA06t25625Z' => 'bra', 'BraA07t27930Z' => 'bra', 'BraA08t35242Z' => 'bra', 'BraA09t38609Z' => 'bra', 'BraA10t43905Z' => 'bra', 'C02p11060' => 'bna', 'C03p42990' => 'bna', 'C03p67310' => 'bna', 'C04p56990' => 'bna', 'C04p58660' => 'bna', 'C05p09890' => 'bna', 'C05p59680' => 'bna', 'C06p19830' => 'bna', 'C06p53040' => 'bna', 'C07p15230' => 'bna', 'C08p50070' => 'bna', 'C08p50090' => 'bna', 'C09p38330' => 'bna', 'C09p53940' => 'bna', 'CAN.G1014.1' => 'can', 'CAN.G644.30' => 'can', 'CAN.G84.47' => 'can', 'CAN.G919.8' => 'can', 'CANSAT54G0113' => 'cansat', 'CANSAT54G1286' => 'cansat', 'CANSAT64G1020' => 'cansat', 'CARHR008080' => 'chi', 'CARHR008090' => 'chi', 'CARHR012130' => 'chi', 'CARHR038390' => 'chi', 'CARHR082330' => 'chi', 'CARHR120520' => 'chi', 'CARHR151470' => 'chi', 'CARHR190950' => 'chi', 'Carub.0001s0760' => 'cru', 'Carub.0001s1146' => 'cru', 'Carub.0003s0721' => 'cru', 'Carub.0004s0858' => 'cru', 'Carub.0005s1040' => 'cru', 'Carub.0006s2035' => 'cru', 'Carub.0015s0005' => 'cru', 'Ca_01607_v3' => 'car', 'Ca_01677_v3' => 'car', 'Ca_06087_v3' => 'car', 'Ca_19238_v3' => 'car', 'Ca_19373_v3' => 'car', 'Ca_21079_v3' => 'car', 'CBR_g54016' => 'cbr', 'CBR_g54018' => 'cbr', 'CBR_g54020' => 'cbr', 'Cc01_g09780' => 'ccan', 'Cc01_g11680' => 'ccan', 'Cc02_g15610' => 'ccan', 'Cc05_g04350' => 'ccan', 'Cc09_g01580' => 'ccan', 'CDE01G0795' => 'cde', 'CDE02G2024' => 'cde', 'CDE02G2260' => 'cde', 'CDE02G4561' => 'cde', 'CDE05G2733' => 'cde', 'CDE05G3422' => 'cde', 'CDE06G2003' => 'cde', 'CDE08G0576' => 'cde', 'CDE09G0048' => 'cde', 'CDE11G0805' => 'cde', 'Cfa003644' => 'cfa', 'Cfa006290' => 'cfa', 'Cfa010080' => 'cfa', 'Cfa011376' => 'cfa', 'Cfa011576' => 'cfa', 'Cfa011577' => 'cfa', 'Cfa014389' => 'cfa', 'Ciclev10006044m.g' => 'ccl', 'Ciclev10006954m.g' => 'ccl', 'Ciclev10015131m.g' => 'ccl', 'Ciclev10015580m.g' => 'ccl', 'Ciclev10028359m.g' => 'ccl', 'Ciclev10028573m.g' => 'ccl', 'CiPaw.03G159300' => 'cil', 'CiPaw.04G115100' => 'cil', 'CiPaw.09G092800' => 'cil', 'CiPaw.10G071800' => 'cil', 'CiPaw.13G105800' => 'cil', 'CiPaw.13G141000' => 'cil', 'CiPaw.14G103400' => 'cil', 'ClCG01G012700' => 'cla', 'ClCG01G012720' => 'cla', 'ClCG01G021920' => 'cla', 'ClCG02G008870' => 'cla', 'ClCG02G020840' => 'cla', 'ClCG02G021930' => 'cla', 'COL.COLO4_19302' => 'col', 'COL.COLO4_25262' => 'col', 'COL.COLO4_31788' => 'col', 'Cpa.g.c34684' => 'cpa', 'Cpa.g.c36520.1' => 'cpa', 'Cpa.g.c45626' => 'cpa', 'Cpa.g.sc121.17' => 'cpa', 'Cpa.g.sc13.22' => 'cpa', 'Cpa.g.sc87.88' => 'cpa', 'Cre06.g261800' => 'cre', 'CsaV3_1G014500' => 'csa', 'CsaV3_1G014510' => 'csa', 'CsaV3_2G034880' => 'csa', 'CsaV3_6G014760' => 'csa', 'CsaV3_6G021500' => 'csa', 'CsaV3_6G048980' => 'csa', 'CSS0002511' => 'camsi', 'CSS0007556' => 'camsi', 'CSS0008532' => 'camsi', 'CSS0009709' => 'camsi', 'CSS0010486' => 'camsi', 'CSS0016768' => 'camsi', 'CSS0023512' => 'camsi', 'CSS0025341' => 'camsi', 'CSS0027999' => 'camsi', 'CSS0028944' => 'camsi', 'CSS0032292' => 'camsi', 'CSS0032464' => 'camsi', 'CSS0037153' => 'camsi', 'CSS0039256' => 'camsi', 'CSS0048392' => 'camsi', 'CSS0050458' => 'camsi', 'DCAR_004224' => 'dca', 'DCAR_006147' => 'dca', 'DCAR_006465' => 'dca', 'DCAR_008159' => 'dca', 'DCAR_012164' => 'dca', 'DCAR_019764' => 'dca', 'Dinv05418' => 'din', 'Dinv10839' => 'din', 'Dinv12521' => 'din', 'Dinv13900' => 'din', 'Dinv29426' => 'din', 'Duzib150G0263' => 'dzi', 'Duzib168G1178' => 'dzi', 'Duzib168G1924' => 'dzi', 'Duzib170G0299' => 'dzi', 'Duzib170G0813' => 'dzi', 'Duzib235G1128' => 'dzi', 'Duzib248G1060' => 'dzi', 'ECA232G1910' => 'eca', 'ECA233G4621' => 'eca', 'ECA238G1216' => 'eca', 'ECA238G1784' => 'eca', 'ECA248G1242' => 'eca', 'EL10Ac8g20071' => 'bvu', 'EL10Ac9g21086' => 'bvu', 'EL10Ac9g22407' => 'bvu', 'EL10Ac9g22412' => 'bvu', 'Eucgr.A01119' => 'egr', 'Eucgr.E04043' => 'egr', 'Eucgr.J00428' => 'egr', 'Eucgr.J00958' => 'egr', 'FAN11G3091' => 'fan', 'FAN11G3651' => 'fan', 'FAN16G2566' => 'fan', 'FAN21G3155' => 'fan', 'FAN21G3400' => 'fan', 'FAN21G3543' => 'fan', 'FAN25G0234' => 'fan', 'FAN25G1422' => 'fan', 'FAN25G3392' => 'fan', 'FvH4_3g01940' => 'fve', 'FvH4_3g29870' => 'fve', 'FvH4_3g33680' => 'fve', 'Glyma.09G004200' => 'gma', 'Glyma.11G151288' => 'gma', 'Glyma.11G189100' => 'gma', 'Glyma.12G072500' => 'gma', 'Glyma.12G085500' => 'gma', 'Glyma.12G181800' => 'gma', 'Glyma.12G193000' => 'gma', 'Glyma.13G309300' => 'gma', 'Glyma.13G319000' => 'gma', 'Glyma.17G012600' => 'gma', 'Gohir.A06G148600' => 'ghi', 'Gohir.A07G115800' => 'ghi', 'Gohir.A08G003600' => 'ghi', 'Gohir.A09G093300' => 'ghi', 'Gohir.A09G105400' => 'ghi', 'Gohir.A09G105500' => 'ghi', 'Gohir.D06G154600' => 'ghi', 'Gohir.D07G120200' => 'ghi', 'Gohir.D08G013900' => 'ghi', 'Gohir.D09G093100' => 'ghi', 'Gohir.D09G102200' => 'ghi', 'Gohir.D09G102300' => 'ghi', 'Gorai.001G129400' => 'gra', 'Gorai.004G008200' => 'gra', 'Gorai.006G109800' => 'gra', 'Gorai.006G119500' => 'gra', 'Gorai.006G121300' => 'gra', 'Gorai.010G180700' => 'gra', 'GSVIVG01012716001' => 'vvi', 'GSVIVG01025118001' => 'vvi', 'GSVIVG01030439001' => 'vvi', 'GSVIVG01031397001' => 'vvi', 'HanXRQChr01g0004201' => 'han', 'HanXRQChr02g0054941' => 'han', 'HanXRQChr05g0141811' => 'han', 'HanXRQChr07g0197751' => 'han', 'HanXRQChr11g0346691' => 'han', 'HanXRQChr13g0396971' => 'han', 'HanXRQChr14g0432951' => 'han', 'HanXRQChr14g0452001' => 'han', 'HanXRQChr15g0496681' => 'han', 'HanXRQChr17g0557491' => 'han', 'HanXRQChr17g0557501' => 'han', 'Haze_06809' => 'cav', 'Haze_12852' => 'cav', 'Haze_15850' => 'cav', 'Haze_23446' => 'cav', 'Haze_23942' => 'cav', 'Haze_23943' => 'cav', 'Hma1.2p1_0091F.1_g046450' => 'hma', 'Hma1.2p1_0128F.1_g059910' => 'hma', 'Hma1.2p1_0249F.1_g102260' => 'hma', 'Hma1.2p1_0453F.1_g156190' => 'hma', 'Hma1.2p1_0695F.1_g204380' => 'hma', 'Hma1.2p1_0749F.1_g212650' => 'hma', 'Hma1.2p1_2156F.1_g315420' => 'hma', 'Hma1.2p1_2686F.1_g326940' => 'hma', 'HPP92_006428' => 'vpl', 'HPP92_012069' => 'vpl', 'HPP92_014129' => 'vpl', 'HPP92_014133' => 'vpl', 'HPP92_017315' => 'vpl', 'HPP92_026445' => 'vpl', 'HPP92_026446' => 'vpl', 'Hund00774' => 'sun', 'Hund07682' => 'sun', 'Hund21413' => 'sun', 'Hund23462' => 'sun', 'Hund23463' => 'sun', 'Lalb_Chr03g0027911' => 'lal', 'Lalb_Chr13g0304271' => 'lal', 'Lalb_Chr19g0137471' => 'lal', 'Lalb_Chr22g0350651' => 'lal', 'Lalb_Chr24g0395151' => 'lal', 'Lj1A1231T40' => 'lonja', 'Lj1A221T48' => 'lonja', 'Lj1C924T12' => 'lonja', 'Lj2C993G6' => 'lonja', 'Lj3g0005790' => 'lja', 'Lj3g0015432' => 'lja', 'Lj3g0017722' => 'lja', 'Lj3g0018497' => 'lja', 'Lj4g0025071' => 'lja', 'Lsat_1_v5_gn_1_129680' => 'lsa', 'Lsat_1_v5_gn_2_25321' => 'lsa', 'Lsat_1_v5_gn_2_95461' => 'lsa', 'Lsat_1_v5_gn_4_159620' => 'lsa', 'Lsat_1_v5_gn_6_41301' => 'lsa', 'Lsat_1_v5_gn_6_74660' => 'lsa', 'Lsat_1_v5_gn_7_11520' => 'lsa', 'Lsat_1_v5_gn_9_67680' => 'lsa', 'Manes.04G008300' => 'mes', 'Manes.04G008400' => 'mes', 'Manes.04G026500' => 'mes', 'Manes.10G135300' => 'mes', 'Manes.11G157300' => 'mes', 'Manes.12G074000' => 'mes', 'Manes.16G006200' => 'mes', 'Manes.17G026400' => 'mes', 'Mapoly0024s0086' => 'mpo', 'Mapoly0024s0087' => 'mpo', 'Mapoly0071s0057' => 'mpo', 'Mapoly0204s0012' => 'mpo', 'MBI04_g37681_MAGBIO' => 'mbi', 'MBI05_g17779_MAGBIO' => 'mbi', 'MBI12_g31184_MAGBIO' => 'mbi', 'MBI17_g11083_MAGBIO' => 'mbi', 'MBI18_g03883_MAGBIO' => 'mbi', 'MBI18_g28940_MAGBIO' => 'mbi', 'MCO01G690' => 'mco', 'MD03G1109900' => 'mdo', 'MD03G1134800' => 'mdo', 'MD05G1348000' => 'mdo', 'MD10G1322400' => 'mdo', 'MD11G1123300' => 'mdo', 'MD11G1157600' => 'mdo', 'Medtr2g084875' => 'mtr', 'Medtr2g088130' => 'mtr', 'Medtr4g055310' => 'mtr', 'Medtr4g061070' => 'mtr', 'Medtr4g132250' => 'mtr', 'MELO3C004795.2' => 'cme', 'MELO3C004797.2' => 'cme', 'MELO3C007396.2' => 'cme', 'MELO3C019277.2' => 'cme', 'MELO3C021449.2' => 'cme', 'MELO3C025736.2' => 'cme', 'Migut.D02175' => 'egut', 'Migut.H01573' => 'egut', 'Migut.M01327' => 'egut', 'Migut.N02513' => 'egut', 'MSTRG.14638' => 'ama', 'MSTRG.18632' => 'ama', 'MSTRG.7203' => 'ama', 'Nitab4.5_0000533g0140' => 'nta', 'Nitab4.5_0000888g0150' => 'nta', 'Nitab4.5_0001453g0040' => 'nta', 'Nitab4.5_0002827g0090' => 'nta', 'Nitab4.5_0003082g0040' => 'nta', 'Nitab4.5_0007799g0040' => 'nta', 'Nitab4.5_0008983g0010' => 'nta', 'Nitab4.5_0009017g0020' => 'nta', 'Nn1g02132' => 'nnu', 'Nn1g03492' => 'nnu', 'Nn1g03493' => 'nnu', 'Nn1g03494' => 'nnu', 'Nn1g07164' => 'nnu', 'Nn1g07291' => 'nnu', 'Nn2g10655' => 'nnu', 'Nn2g11652' => 'nnu', 'Nn2g14008' => 'nnu', 'Nn3g17476' => 'nnu', 'Nn3g17477' => 'nnu', 'Nn4g22370' => 'nnu', 'Nn4g25255' => 'nnu', 'Nn5g27755' => 'nnu', 'Nn6g34260' => 'nnu', 'Nn6g35041' => 'nnu', 'Oeu005924.1' => 'oeu', 'Oeu008383.1' => 'oeu', 'Oeu014928.1' => 'oeu', 'Oeu019889.1' => 'oeu', 'Oeu022271.1' => 'oeu', 'Oeu025271.1' => 'oeu', 'Oeu036302.1' => 'oeu', 'Oeu044100.1' => 'oeu', 'Os01g0528300' => 'osa', 'Os03g0286200' => 'osa', 'Os04g0406600' => 'osa', 'Os07g0512000' => 'osa', 'Os07g0694600' => 'osa', 'Os08g0411000' => 'osa', 'Os09g0565700' => 'osa', 'Os09g0566050' => 'osa', 'Os10g0523700' => 'osa', 'Peaxi162Scf00002g00514' => 'pax', 'Peaxi162Scf00047g01817' => 'pax', 'Peaxi162Scf00114g00001' => 'pax', 'Peaxi162Scf00147g00613' => 'pax', 'Peaxi162Scf00389g00425' => 'pax', 'PGR042G1139' => 'pgr', 'PGR042G3273' => 'pgr', 'PGR102G2180' => 'pgr', 'PGR119G0234' => 'pgr', 'PGR119G0668' => 'pgr', 'PGSC0003DMG400007122' => 'stu', 'PGSC0003DMG400016478' => 'stu', 'PGSC0003DMG400025374' => 'stu', 'PGSC0003DMG400026536' => 'stu', 'Phvul.003G079600' => 'pvu', 'Phvul.005G115600' => 'pvu', 'Phvul.005G127100' => 'pvu', 'Phvul.006G149500' => 'pvu', 'Phvul.006G149600' => 'pvu', 'Phvul.011G071800' => 'pvu', 'Phvul.011G090400' => 'pvu', 'Potri.004G013400' => 'ptr', 'Potri.004G188100' => 'ptr', 'Potri.008G195500' => 'ptr', 'Potri.009G148800' => 'ptr', 'Potri.011G004700' => 'ptr', 'Pp3c17_22810' => 'ppa', 'Pp3c18_4480' => 'ppa', 'Pp3c19_13030' => 'ppa', 'Pp3c1_33620' => 'ppa', 'Pp3c2_9380' => 'ppa', 'PRCOL_00001023' => 'pco', 'Prupe.3G216300' => 'ppe', 'Prupe.4G019500' => 'ppe', 'Prupe.6G092500' => 'ppe', 'Prupe.6G119200' => 'ppe', 'Psat0s1945g0080' => 'psa', 'Psat0s4167g0040' => 'psa', 'Psat1g185800' => 'psa', 'Psat4g006440' => 'psa', 'Psat4g006480' => 'psa', 'Psat4g168120' => 'psa', 'Psat5g255680' => 'psa', 'Psat5g261760' => 'psa', 'Psat7g222120' => 'psa', 'PSO063G7252' => 'pso', 'PSO170G4778' => 'pso', 'PSO210G2249' => 'pso', 'PSO339G2411' => 'pso', 'PSO339G2457' => 'pso', 'PSO339G2854' => 'pso', 'PSO339G4288' => 'pso', 'PSO339G4615' => 'pso', 'PSO384G2796' => 'pso', 'PSO384G2940' => 'pso', 'PSO384G4227' => 'pso', 'PSO478G1425' => 'pso', 'PSO541G3863' => 'pso', 'PSO675G0507' => 'pso', 'PSO782G0338' => 'pso', 'PSO832G0644' => 'pso', 'QL01p013664' => 'qlo', 'QL01p036598' => 'qlo', 'QL05p072984' => 'qlo', 'QL08p005768' => 'qlo', 'QL08p032743' => 'qlo', 'QL93p0073_0439' => 'qlo', 'QL93p0073_0444' => 'qlo', 'RcHm_v2.0_Chr5g0002851' => 'rch', 'RcHm_v2.0_Chr5g0055201' => 'rch', 'RcHm_v2.0_Chr5g0061191' => 'rch', 'RcHm_v2.0_Chr7g0203231' => 'rch', 'Rhsim01G0208100' => 'rsi', 'Rhsim01G0208200' => 'rsi', 'Rhsim02G0106500' => 'rsi', 'Rhsim03G0107900' => 'rsi', 'Rhsim06G0163400' => 'rsi', 'Rhsim13G0105200' => 'rsi', 'Sabra04G0006300' => 'sbr', 'Sabra04G0127000' => 'sbr', 'Sabra08G0148700' => 'sbr', 'Sabra09G0117400' => 'sbr', 'SalBow1G3326' => 'sbo', 'SalBow3G3228' => 'sbo', 'SalBow6G1634' => 'sbo', 'SalBow6G3603' => 'sbo', 'SalBow6G5266' => 'sbo', 'SalBow7G2265' => 'sbo', 'SalBow8G0850' => 'sbo', 'SalBow8G2592' => 'sbo', 'Sc05g0009240' => 'sci', 'Sc12g0002300' => 'sci', 'Sc21g0000100' => 'sci', 'Sc21g0004720' => 'sci', 'Sed0002949' => 'sed', 'Sed0004114' => 'sed', 'Sed0004306' => 'sed', 'Sed0006172' => 'sed', 'Sed0008413' => 'sed', 'Sed0013809' => 'sed', 'Sed0019556' => 'sed', 'SEGI_03570' => 'sgi', 'SEGI_07859' => 'sgi', 'SEGI_15042' => 'sgi', 'SEGI_16263' => 'sgi', 'SEGI_16552' => 'sgi', 'SEGI_24331' => 'sgi', 'SEGI_27316' => 'sgi', 'SEGI_29521' => 'sgi', 'SEGI_41342' => 'sgi', 'SGA_v2.0_scaffold27G11617' => 'sas', 'SGA_v2.0_scaffold316G48428' => 'sas', 'SGA_v2.0_scaffold49G18261' => 'sas', 'SGA_v2.0_scaffold7G03831' => 'sas', 'SGA_v2.0_scaffold93G28359' => 'sas', 'SHI02210' => 'shi', 'SHI06028' => 'shi', 'SHI06321' => 'shi', 'SMO111G0012' => 'smo', 'SMO228G0080' => 'smo', 'SMO356G0756' => 'smo', 'Solyc02g080620.3' => 'sly', 'Solyc06g074530.1' => 'sly', 'Solyc11g066890.1' => 'sly', 'Solyc11g072520.3' => 'sly', 'Sopen02g025330' => 'spe', 'Sopen06g031000' => 'spe', 'Sopen09g008240' => 'spe', 'Sopen09g025210' => 'spe', 'Sopen11g026600' => 'spe', 'Sopen11g030170' => 'spe', 'Sp1g10420' => 'spa', 'Sp3g06570' => 'spa', 'Sp4g10660' => 'spa', 'Sp5g16460' => 'spa', 'Sp6g22710' => 'spa', 'TAR365G0112' => 'tar', 'TAR369G0717' => 'tar', 'TAR374G0976' => 'tar', 'TAR623G1128' => 'tar', 'TAR626G1937' => 'tar', 'TAR627G0123' => 'tar', 'TAR628G0305' => 'tar', 'TAR636G1176' => 'tar', 'TAR636G2442' => 'tar', 'THA.LOC104800556' => 'tha', 'THA.LOC104809501' => 'tha', 'THA.LOC104815126' => 'tha', 'THA.LOC104815732' => 'tha', 'THA.LOC104823528' => 'tha', 'Thecc.02G365600' => 'tca', 'Thecc.06G222300' => 'tca', 'Thecc.09G261800' => 'tca', 'Thecc.09G291400' => 'tca', 'Thhalv10003028m.g' => 'esa', 'Thhalv10007886m.g' => 'esa', 'Thhalv10016085m.g' => 'esa', 'Thhalv10016681m.g' => 'esa', 'Thhalv10020951m.g' => 'esa', 'TPR.G15598' => 'tpr', 'TPR.G29305' => 'tpr', 'TPR.G32395' => 'tpr', 'TPR.G36998' => 'tpr', 'TPR.G4227' => 'tpr', 'TWI18G1433' => 'twi', 'TWI31G0755' => 'twi', 'TWI38G0912' => 'twi', 'TWI75G1097' => 'twi', 'TWI75G1619' => 'twi', 'TWI79G1336' => 'twi', 'unitig_0.g943' => 'ugi', 'unitig_0.g944' => 'ugi', 'unitig_22.g6646' => 'ugi', 'unitig_37.g12681' => 'ugi', 'unitig_8.g3290' => 'ugi', 'vmacro03278' => 'vma', 'vmacro12197' => 'vma', 'vmacro14478' => 'vma', 'vmacro15787' => 'vma', 'vmacro15789' => 'vma', 'vmacro15790' => 'vma', 'vmacro15806' => 'vma', 'vmacro22907' => 'vma', 'vmacro22908' => 'vma', 'vmacro22909' => 'vma', 'vmacro23108' => 'vma', 'VMungo0540G0540' => 'vmu', 'VMungo0540G2468' => 'vmu', 'VMungo1080G0390' => 'vmu', 'VMungo1080G1165' => 'vmu', 'VMungo1127G0170' => 'vmu', 'VMungo1127G2099' => 'vmu', 'VMungo1215G3013' => 'vmu', 'Zm00001eb013110' => 'zma', 'Zm00001eb084260' => 'zma', 'Zm00001eb096110' => 'zma', 'Zm00001eb217510' => 'zma', 'Zm00001eb322550' => 'zma', 'Zm00001eb390770' => 'zma', 'Zm00001eb397170' => 'zma', 'Zm00001eb404610' => 'zma', 'Zm00001eb421790' => 'zma' ) $gf_id = 'HOM05D000911' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000911' ) $data_identifier = 'HOM05D000911' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 16, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 5, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 6, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 8, 'nnu' => (int) 16, 'oeu' => (int) 8, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 5, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 16, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421790' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000911', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27780' => 'bna', 'A03p35380' => 'bna', 'A04p21160' => 'bna', 'A05p40570' => 'bna', 'A06p26900' => 'bna', 'A08p33230' => 'bna', 'A09p65960' => 'bna', 'A10p18290' => 'bna', 'Aa31LG1G12990' => 'aar', 'Aa31LG1G2980' => 'aar', 'Aa31LG4G14320' => 'aar', 'Aa31LG7G11800' => 'aar', 'Aa31sc36G50' => 'aar', 'Aa31sc36G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3721' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5459' => 'aag', 'Actinidia03028' => 'ach', 'Actinidia03753' => 'ach', 'Actinidia04187' => 'ach', 'Actinidia05509' => 'ach', 'Actinidia24180' => 'ach', 'Actinidia26906' => 'ach', 'Actinidia37097' => 'ach', 'Actinidia38249' => 'ach', 'Ah.01g003470' => 'amhyb', 'Ah.01g004580' => 'amhyb', 'Ah.01g014850' => 'amhyb', 'Ah.01g016830' => 'amhyb', 'Ah.14g088000' => 'amhyb', 'AL1G22980' => 'aly', 'AL3G18990' => 'aly', 'AL4G22440' => 'aly', 'AL4G33180' => 'aly', 'AL5G22920' => 'aly', 'AL6G33660' => 'aly', 'AL8G20720' => 'aly', 'Aqoxy1G00935' => 'aox', 'Aqoxy1G02094' => 'aox', 'Aqoxy2G01239' => 'aox', 'Aqoxy4G01870' => 'aox', 'Aqoxy7G00450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.36ZVTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71EM27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5D6C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH3WRE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3NCM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RIM768' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YB5YRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z36GDV' => 'arhy', 'AT1G08250' => 'ath', 'AT1G11790' => 'ath', 'AT2G27820' => 'ath', 'AT3G07630' => 'ath', 'AT3G44720' => 'ath', 'AT5G22630' => 'ath', 'ATR0693G304' => 'atr', 'ATR0794G109' => 'atr', 'ATR0820G120' => 'atr', 'ATR1159G064' => 'atr', 'Atru.chr10.2239' => 'acertr', 'Atru.chr3.3371' => 'acertr', 'Atru.chr6.3202' => 'acertr', 'AUR62006499' => 'cqu', 'AUR62012718' => 'cqu', 'AUR62021938' => 'cqu', 'AUR62023932' => 'cqu', 'AUR62025034' => 'cqu', 'AUR62025035' => 'cqu', 'AUR62038307' => 'cqu', 'AUR62043466' => 'cqu', 'BcaB02g10748' => 'bca', 'BcaB03g13231' => 'bca', 'BcaB03g14689' => 'bca', 'BcaB05g22716' => 'bca', 'BcaB06g28172' => 'bca', 'BcaB08g36413' => 'bca', 'BcaC01g02186' => 'bca', 'BcaC01g04272' => 'bca', 'BcaC02g08080' => 'bca', 'BcaC02g08227' => 'bca', 'BcaC03g13901' => 'bca', 'BcaC04g19593' => 'bca', 'BcaC04g20874' => 'bca', 'BcaC05g29557' => 'bca', 'BcaC06g35505' => 'bca', 'BcaC07g41954' => 'bca', 'BcaC07g41955' => 'bca', 'BcaC07g41956' => 'bca', 'BcaC07g42519' => 'bca', 'BcaC07g42520' => 'bca', 'BcaC07g42523' => 'bca', 'BcaC07g42524' => 'bca', 'BcaC07g42525' => 'bca', 'BcaC08g47480' => 'bca', 'BcaC08g47481' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00530' => 'bna', 'BolC2t07178H' => 'bol', 'BolC3t16567H' => 'bol', 'BolC4t27234H' => 'bol', 'BolC5t29728H' => 'bol', 'BolC5t34622H' => 'bol', 'BolC6t40321H' => 'bol', 'BolC7t42028H' => 'bol', 'BolC8t49125H' => 'bol', 'BolC8t52538H' => 'bol', 'BolC8t52539H' => 'bol', 'BolC9t56681H' => 'bol', 'BolC9t58266H' => 'bol', 'BolSC21t60294H' => 'bol', 'BraA02t05670Z' => 'bra', 'BraA03t12716Z' => 'bra', 'BraA04t17685Z' => 'bra', 'BraA05t22788Z' => 'bra', 'BraA06t24032Z' => 'bra', 'BraA06t25625Z' => 'bra', 'BraA07t27930Z' => 'bra', 'BraA08t35242Z' => 'bra', 'BraA09t38609Z' => 'bra', 'BraA10t43905Z' => 'bra', 'C02p11060' => 'bna', 'C03p42990' => 'bna', 'C03p67310' => 'bna', 'C04p56990' => 'bna', 'C04p58660' => 'bna', 'C05p09890' => 'bna', 'C05p59680' => 'bna', 'C06p19830' => 'bna', 'C06p53040' => 'bna', 'C07p15230' => 'bna', 'C08p50070' => 'bna', 'C08p50090' => 'bna', 'C09p38330' => 'bna', 'C09p53940' => 'bna', 'CAN.G1014.1' => 'can', 'CAN.G644.30' => 'can', 'CAN.G84.47' => 'can', 'CAN.G919.8' => 'can', 'CANSAT54G0113' => 'cansat', 'CANSAT54G1286' => 'cansat', 'CANSAT64G1020' => 'cansat', 'CARHR008080' => 'chi', 'CARHR008090' => 'chi', 'CARHR012130' => 'chi', 'CARHR038390' => 'chi', 'CARHR082330' => 'chi', 'CARHR120520' => 'chi', 'CARHR151470' => 'chi', 'CARHR190950' => 'chi', 'Carub.0001s0760' => 'cru', 'Carub.0001s1146' => 'cru', 'Carub.0003s0721' => 'cru', 'Carub.0004s0858' => 'cru', 'Carub.0005s1040' => 'cru', 'Carub.0006s2035' => 'cru', 'Carub.0015s0005' => 'cru', 'Ca_01607_v3' => 'car', 'Ca_01677_v3' => 'car', 'Ca_06087_v3' => 'car', 'Ca_19238_v3' => 'car', 'Ca_19373_v3' => 'car', 'Ca_21079_v3' => 'car', 'CBR_g54016' => 'cbr', 'CBR_g54018' => 'cbr', 'CBR_g54020' => 'cbr', 'Cc01_g09780' => 'ccan', 'Cc01_g11680' => 'ccan', 'Cc02_g15610' => 'ccan', 'Cc05_g04350' => 'ccan', 'Cc09_g01580' => 'ccan', 'CDE01G0795' => 'cde', 'CDE02G2024' => 'cde', 'CDE02G2260' => 'cde', 'CDE02G4561' => 'cde', 'CDE05G2733' => 'cde', 'CDE05G3422' => 'cde', 'CDE06G2003' => 'cde', 'CDE08G0576' => 'cde', 'CDE09G0048' => 'cde', 'CDE11G0805' => 'cde', 'Cfa003644' => 'cfa', 'Cfa006290' => 'cfa', 'Cfa010080' => 'cfa', 'Cfa011376' => 'cfa', 'Cfa011576' => 'cfa', 'Cfa011577' => 'cfa', 'Cfa014389' => 'cfa', 'Ciclev10006044m.g' => 'ccl', 'Ciclev10006954m.g' => 'ccl', 'Ciclev10015131m.g' => 'ccl', 'Ciclev10015580m.g' => 'ccl', 'Ciclev10028359m.g' => 'ccl', 'Ciclev10028573m.g' => 'ccl', 'CiPaw.03G159300' => 'cil', 'CiPaw.04G115100' => 'cil', 'CiPaw.09G092800' => 'cil', 'CiPaw.10G071800' => 'cil', 'CiPaw.13G105800' => 'cil', 'CiPaw.13G141000' => 'cil', 'CiPaw.14G103400' => 'cil', 'ClCG01G012700' => 'cla', 'ClCG01G012720' => 'cla', 'ClCG01G021920' => 'cla', 'ClCG02G008870' => 'cla', 'ClCG02G020840' => 'cla', 'ClCG02G021930' => 'cla', 'COL.COLO4_19302' => 'col', 'COL.COLO4_25262' => 'col', 'COL.COLO4_31788' => 'col', 'Cpa.g.c34684' => 'cpa', 'Cpa.g.c36520.1' => 'cpa', 'Cpa.g.c45626' => 'cpa', 'Cpa.g.sc121.17' => 'cpa', 'Cpa.g.sc13.22' => 'cpa', 'Cpa.g.sc87.88' => 'cpa', 'Cre06.g261800' => 'cre', 'CsaV3_1G014500' => 'csa', 'CsaV3_1G014510' => 'csa', 'CsaV3_2G034880' => 'csa', 'CsaV3_6G014760' => 'csa', 'CsaV3_6G021500' => 'csa', 'CsaV3_6G048980' => 'csa', 'CSS0002511' => 'camsi', 'CSS0007556' => 'camsi', 'CSS0008532' => 'camsi', 'CSS0009709' => 'camsi', 'CSS0010486' => 'camsi', 'CSS0016768' => 'camsi', 'CSS0023512' => 'camsi', 'CSS0025341' => 'camsi', 'CSS0027999' => 'camsi', 'CSS0028944' => 'camsi', 'CSS0032292' => 'camsi', 'CSS0032464' => 'camsi', 'CSS0037153' => 'camsi', 'CSS0039256' => 'camsi', 'CSS0048392' => 'camsi', 'CSS0050458' => 'camsi', 'DCAR_004224' => 'dca', 'DCAR_006147' => 'dca', 'DCAR_006465' => 'dca', 'DCAR_008159' => 'dca', 'DCAR_012164' => 'dca', 'DCAR_019764' => 'dca', 'Dinv05418' => 'din', 'Dinv10839' => 'din', 'Dinv12521' => 'din', 'Dinv13900' => 'din', 'Dinv29426' => 'din', 'Duzib150G0263' => 'dzi', 'Duzib168G1178' => 'dzi', 'Duzib168G1924' => 'dzi', 'Duzib170G0299' => 'dzi', 'Duzib170G0813' => 'dzi', 'Duzib235G1128' => 'dzi', 'Duzib248G1060' => 'dzi', 'ECA232G1910' => 'eca', 'ECA233G4621' => 'eca', 'ECA238G1216' => 'eca', 'ECA238G1784' => 'eca', 'ECA248G1242' => 'eca', 'EL10Ac8g20071' => 'bvu', 'EL10Ac9g21086' => 'bvu', 'EL10Ac9g22407' => 'bvu', 'EL10Ac9g22412' => 'bvu', 'Eucgr.A01119' => 'egr', 'Eucgr.E04043' => 'egr', 'Eucgr.J00428' => 'egr', 'Eucgr.J00958' => 'egr', 'FAN11G3091' => 'fan', 'FAN11G3651' => 'fan', 'FAN16G2566' => 'fan', 'FAN21G3155' => 'fan', 'FAN21G3400' => 'fan', 'FAN21G3543' => 'fan', 'FAN25G0234' => 'fan', 'FAN25G1422' => 'fan', 'FAN25G3392' => 'fan', 'FvH4_3g01940' => 'fve', 'FvH4_3g29870' => 'fve', 'FvH4_3g33680' => 'fve', 'Glyma.09G004200' => 'gma', 'Glyma.11G151288' => 'gma', 'Glyma.11G189100' => 'gma', 'Glyma.12G072500' => 'gma', 'Glyma.12G085500' => 'gma', 'Glyma.12G181800' => 'gma', 'Glyma.12G193000' => 'gma', 'Glyma.13G309300' => 'gma', 'Glyma.13G319000' => 'gma', 'Glyma.17G012600' => 'gma', 'Gohir.A06G148600' => 'ghi', 'Gohir.A07G115800' => 'ghi', 'Gohir.A08G003600' => 'ghi', 'Gohir.A09G093300' => 'ghi', 'Gohir.A09G105400' => 'ghi', 'Gohir.A09G105500' => 'ghi', 'Gohir.D06G154600' => 'ghi', 'Gohir.D07G120200' => 'ghi', 'Gohir.D08G013900' => 'ghi', 'Gohir.D09G093100' => 'ghi', 'Gohir.D09G102200' => 'ghi', 'Gohir.D09G102300' => 'ghi', 'Gorai.001G129400' => 'gra', 'Gorai.004G008200' => 'gra', 'Gorai.006G109800' => 'gra', 'Gorai.006G119500' => 'gra', 'Gorai.006G121300' => 'gra', 'Gorai.010G180700' => 'gra', 'GSVIVG01012716001' => 'vvi', 'GSVIVG01025118001' => 'vvi', 'GSVIVG01030439001' => 'vvi', 'GSVIVG01031397001' => 'vvi', 'HanXRQChr01g0004201' => 'han', 'HanXRQChr02g0054941' => 'han', 'HanXRQChr05g0141811' => 'han', 'HanXRQChr07g0197751' => 'han', 'HanXRQChr11g0346691' => 'han', 'HanXRQChr13g0396971' => 'han', 'HanXRQChr14g0432951' => 'han', 'HanXRQChr14g0452001' => 'han', 'HanXRQChr15g0496681' => 'han', 'HanXRQChr17g0557491' => 'han', 'HanXRQChr17g0557501' => 'han', 'Haze_06809' => 'cav', 'Haze_12852' => 'cav', 'Haze_15850' => 'cav', 'Haze_23446' => 'cav', 'Haze_23942' => 'cav', 'Haze_23943' => 'cav', 'Hma1.2p1_0091F.1_g046450' => 'hma', 'Hma1.2p1_0128F.1_g059910' => 'hma', 'Hma1.2p1_0249F.1_g102260' => 'hma', 'Hma1.2p1_0453F.1_g156190' => 'hma', 'Hma1.2p1_0695F.1_g204380' => 'hma', 'Hma1.2p1_0749F.1_g212650' => 'hma', 'Hma1.2p1_2156F.1_g315420' => 'hma', 'Hma1.2p1_2686F.1_g326940' => 'hma', 'HPP92_006428' => 'vpl', 'HPP92_012069' => 'vpl', 'HPP92_014129' => 'vpl', 'HPP92_014133' => 'vpl', 'HPP92_017315' => 'vpl', 'HPP92_026445' => 'vpl', 'HPP92_026446' => 'vpl', 'Hund00774' => 'sun', 'Hund07682' => 'sun', 'Hund21413' => 'sun', 'Hund23462' => 'sun', 'Hund23463' => 'sun', 'Lalb_Chr03g0027911' => 'lal', 'Lalb_Chr13g0304271' => 'lal', 'Lalb_Chr19g0137471' => 'lal', 'Lalb_Chr22g0350651' => 'lal', 'Lalb_Chr24g0395151' => 'lal', 'Lj1A1231T40' => 'lonja', 'Lj1A221T48' => 'lonja', 'Lj1C924T12' => 'lonja', 'Lj2C993G6' => 'lonja', 'Lj3g0005790' => 'lja', 'Lj3g0015432' => 'lja', 'Lj3g0017722' => 'lja', 'Lj3g0018497' => 'lja', 'Lj4g0025071' => 'lja', 'Lsat_1_v5_gn_1_129680' => 'lsa', 'Lsat_1_v5_gn_2_25321' => 'lsa', 'Lsat_1_v5_gn_2_95461' => 'lsa', 'Lsat_1_v5_gn_4_159620' => 'lsa', 'Lsat_1_v5_gn_6_41301' => 'lsa', 'Lsat_1_v5_gn_6_74660' => 'lsa', 'Lsat_1_v5_gn_7_11520' => 'lsa', 'Lsat_1_v5_gn_9_67680' => 'lsa', 'Manes.04G008300' => 'mes', 'Manes.04G008400' => 'mes', 'Manes.04G026500' => 'mes', 'Manes.10G135300' => 'mes', 'Manes.11G157300' => 'mes', 'Manes.12G074000' => 'mes', 'Manes.16G006200' => 'mes', 'Manes.17G026400' => 'mes', 'Mapoly0024s0086' => 'mpo', 'Mapoly0024s0087' => 'mpo', 'Mapoly0071s0057' => 'mpo', 'Mapoly0204s0012' => 'mpo', 'MBI04_g37681_MAGBIO' => 'mbi', 'MBI05_g17779_MAGBIO' => 'mbi', 'MBI12_g31184_MAGBIO' => 'mbi', 'MBI17_g11083_MAGBIO' => 'mbi', 'MBI18_g03883_MAGBIO' => 'mbi', 'MBI18_g28940_MAGBIO' => 'mbi', 'MCO01G690' => 'mco', 'MD03G1109900' => 'mdo', 'MD03G1134800' => 'mdo', 'MD05G1348000' => 'mdo', 'MD10G1322400' => 'mdo', 'MD11G1123300' => 'mdo', 'MD11G1157600' => 'mdo', 'Medtr2g084875' => 'mtr', 'Medtr2g088130' => 'mtr', 'Medtr4g055310' => 'mtr', 'Medtr4g061070' => 'mtr', 'Medtr4g132250' => 'mtr', 'MELO3C004795.2' => 'cme', 'MELO3C004797.2' => 'cme', 'MELO3C007396.2' => 'cme', 'MELO3C019277.2' => 'cme', 'MELO3C021449.2' => 'cme', 'MELO3C025736.2' => 'cme', 'Migut.D02175' => 'egut', 'Migut.H01573' => 'egut', 'Migut.M01327' => 'egut', 'Migut.N02513' => 'egut', 'MSTRG.14638' => 'ama', 'MSTRG.18632' => 'ama', 'MSTRG.7203' => 'ama', 'Nitab4.5_0000533g0140' => 'nta', 'Nitab4.5_0000888g0150' => 'nta', 'Nitab4.5_0001453g0040' => 'nta', 'Nitab4.5_0002827g0090' => 'nta', 'Nitab4.5_0003082g0040' => 'nta', 'Nitab4.5_0007799g0040' => 'nta', 'Nitab4.5_0008983g0010' => 'nta', 'Nitab4.5_0009017g0020' => 'nta', 'Nn1g02132' => 'nnu', 'Nn1g03492' => 'nnu', 'Nn1g03493' => 'nnu', 'Nn1g03494' => 'nnu', 'Nn1g07164' => 'nnu', 'Nn1g07291' => 'nnu', 'Nn2g10655' => 'nnu', 'Nn2g11652' => 'nnu', 'Nn2g14008' => 'nnu', 'Nn3g17476' => 'nnu', 'Nn3g17477' => 'nnu', 'Nn4g22370' => 'nnu', 'Nn4g25255' => 'nnu', 'Nn5g27755' => 'nnu', 'Nn6g34260' => 'nnu', 'Nn6g35041' => 'nnu', 'Oeu005924.1' => 'oeu', 'Oeu008383.1' => 'oeu', 'Oeu014928.1' => 'oeu', 'Oeu019889.1' => 'oeu', 'Oeu022271.1' => 'oeu', 'Oeu025271.1' => 'oeu', 'Oeu036302.1' => 'oeu', 'Oeu044100.1' => 'oeu', 'Os01g0528300' => 'osa', 'Os03g0286200' => 'osa', 'Os04g0406600' => 'osa', 'Os07g0512000' => 'osa', 'Os07g0694600' => 'osa', 'Os08g0411000' => 'osa', 'Os09g0565700' => 'osa', 'Os09g0566050' => 'osa', 'Os10g0523700' => 'osa', 'Peaxi162Scf00002g00514' => 'pax', 'Peaxi162Scf00047g01817' => 'pax', 'Peaxi162Scf00114g00001' => 'pax', 'Peaxi162Scf00147g00613' => 'pax', 'Peaxi162Scf00389g00425' => 'pax', 'PGR042G1139' => 'pgr', 'PGR042G3273' => 'pgr', 'PGR102G2180' => 'pgr', 'PGR119G0234' => 'pgr', 'PGR119G0668' => 'pgr', 'PGSC0003DMG400007122' => 'stu', 'PGSC0003DMG400016478' => 'stu', 'PGSC0003DMG400025374' => 'stu', 'PGSC0003DMG400026536' => 'stu', 'Phvul.003G079600' => 'pvu', 'Phvul.005G115600' => 'pvu', 'Phvul.005G127100' => 'pvu', 'Phvul.006G149500' => 'pvu', 'Phvul.006G149600' => 'pvu', 'Phvul.011G071800' => 'pvu', 'Phvul.011G090400' => 'pvu', 'Potri.004G013400' => 'ptr', 'Potri.004G188100' => 'ptr', 'Potri.008G195500' => 'ptr', 'Potri.009G148800' => 'ptr', 'Potri.011G004700' => 'ptr', 'Pp3c17_22810' => 'ppa', 'Pp3c18_4480' => 'ppa', 'Pp3c19_13030' => 'ppa', 'Pp3c1_33620' => 'ppa', 'Pp3c2_9380' => 'ppa', 'PRCOL_00001023' => 'pco', 'Prupe.3G216300' => 'ppe', 'Prupe.4G019500' => 'ppe', 'Prupe.6G092500' => 'ppe', 'Prupe.6G119200' => 'ppe', 'Psat0s1945g0080' => 'psa', 'Psat0s4167g0040' => 'psa', 'Psat1g185800' => 'psa', 'Psat4g006440' => 'psa', 'Psat4g006480' => 'psa', 'Psat4g168120' => 'psa', 'Psat5g255680' => 'psa', 'Psat5g261760' => 'psa', 'Psat7g222120' => 'psa', 'PSO063G7252' => 'pso', 'PSO170G4778' => 'pso', 'PSO210G2249' => 'pso', 'PSO339G2411' => 'pso', 'PSO339G2457' => 'pso', 'PSO339G2854' => 'pso', 'PSO339G4288' => 'pso', 'PSO339G4615' => 'pso', 'PSO384G2796' => 'pso', 'PSO384G2940' => 'pso', 'PSO384G4227' => 'pso', 'PSO478G1425' => 'pso', 'PSO541G3863' => 'pso', 'PSO675G0507' => 'pso', 'PSO782G0338' => 'pso', 'PSO832G0644' => 'pso', 'QL01p013664' => 'qlo', 'QL01p036598' => 'qlo', 'QL05p072984' => 'qlo', 'QL08p005768' => 'qlo', 'QL08p032743' => 'qlo', 'QL93p0073_0439' => 'qlo', 'QL93p0073_0444' => 'qlo', 'RcHm_v2.0_Chr5g0002851' => 'rch', 'RcHm_v2.0_Chr5g0055201' => 'rch', 'RcHm_v2.0_Chr5g0061191' => 'rch', 'RcHm_v2.0_Chr7g0203231' => 'rch', 'Rhsim01G0208100' => 'rsi', 'Rhsim01G0208200' => 'rsi', 'Rhsim02G0106500' => 'rsi', 'Rhsim03G0107900' => 'rsi', 'Rhsim06G0163400' => 'rsi', 'Rhsim13G0105200' => 'rsi', 'Sabra04G0006300' => 'sbr', 'Sabra04G0127000' => 'sbr', 'Sabra08G0148700' => 'sbr', 'Sabra09G0117400' => 'sbr', 'SalBow1G3326' => 'sbo', 'SalBow3G3228' => 'sbo', 'SalBow6G1634' => 'sbo', 'SalBow6G3603' => 'sbo', 'SalBow6G5266' => 'sbo', 'SalBow7G2265' => 'sbo', 'SalBow8G0850' => 'sbo', 'SalBow8G2592' => 'sbo', 'Sc05g0009240' => 'sci', 'Sc12g0002300' => 'sci', 'Sc21g0000100' => 'sci', 'Sc21g0004720' => 'sci', 'Sed0002949' => 'sed', 'Sed0004114' => 'sed', 'Sed0004306' => 'sed', 'Sed0006172' => 'sed', 'Sed0008413' => 'sed', 'Sed0013809' => 'sed', 'Sed0019556' => 'sed', 'SEGI_03570' => 'sgi', 'SEGI_07859' => 'sgi', 'SEGI_15042' => 'sgi', 'SEGI_16263' => 'sgi', 'SEGI_16552' => 'sgi', 'SEGI_24331' => 'sgi', 'SEGI_27316' => 'sgi', 'SEGI_29521' => 'sgi', 'SEGI_41342' => 'sgi', 'SGA_v2.0_scaffold27G11617' => 'sas', 'SGA_v2.0_scaffold316G48428' => 'sas', 'SGA_v2.0_scaffold49G18261' => 'sas', 'SGA_v2.0_scaffold7G03831' => 'sas', 'SGA_v2.0_scaffold93G28359' => 'sas', 'SHI02210' => 'shi', 'SHI06028' => 'shi', 'SHI06321' => 'shi', 'SMO111G0012' => 'smo', 'SMO228G0080' => 'smo', 'SMO356G0756' => 'smo', 'Solyc02g080620.3' => 'sly', 'Solyc06g074530.1' => 'sly', 'Solyc11g066890.1' => 'sly', 'Solyc11g072520.3' => 'sly', 'Sopen02g025330' => 'spe', 'Sopen06g031000' => 'spe', 'Sopen09g008240' => 'spe', 'Sopen09g025210' => 'spe', 'Sopen11g026600' => 'spe', 'Sopen11g030170' => 'spe', 'Sp1g10420' => 'spa', 'Sp3g06570' => 'spa', 'Sp4g10660' => 'spa', 'Sp5g16460' => 'spa', 'Sp6g22710' => 'spa', 'TAR365G0112' => 'tar', 'TAR369G0717' => 'tar', 'TAR374G0976' => 'tar', 'TAR623G1128' => 'tar', 'TAR626G1937' => 'tar', 'TAR627G0123' => 'tar', 'TAR628G0305' => 'tar', 'TAR636G1176' => 'tar', 'TAR636G2442' => 'tar', 'THA.LOC104800556' => 'tha', 'THA.LOC104809501' => 'tha', 'THA.LOC104815126' => 'tha', 'THA.LOC104815732' => 'tha', 'THA.LOC104823528' => 'tha', 'Thecc.02G365600' => 'tca', 'Thecc.06G222300' => 'tca', 'Thecc.09G261800' => 'tca', 'Thecc.09G291400' => 'tca', 'Thhalv10003028m.g' => 'esa', 'Thhalv10007886m.g' => 'esa', 'Thhalv10016085m.g' => 'esa', 'Thhalv10016681m.g' => 'esa', 'Thhalv10020951m.g' => 'esa', 'TPR.G15598' => 'tpr', 'TPR.G29305' => 'tpr', 'TPR.G32395' => 'tpr', 'TPR.G36998' => 'tpr', 'TPR.G4227' => 'tpr', 'TWI18G1433' => 'twi', 'TWI31G0755' => 'twi', 'TWI38G0912' => 'twi', 'TWI75G1097' => 'twi', 'TWI75G1619' => 'twi', 'TWI79G1336' => 'twi', 'unitig_0.g943' => 'ugi', 'unitig_0.g944' => 'ugi', 'unitig_22.g6646' => 'ugi', 'unitig_37.g12681' => 'ugi', 'unitig_8.g3290' => 'ugi', 'vmacro03278' => 'vma', 'vmacro12197' => 'vma', 'vmacro14478' => 'vma', 'vmacro15787' => 'vma', 'vmacro15789' => 'vma', 'vmacro15790' => 'vma', 'vmacro15806' => 'vma', 'vmacro22907' => 'vma', 'vmacro22908' => 'vma', 'vmacro22909' => 'vma', 'vmacro23108' => 'vma', 'VMungo0540G0540' => 'vmu', 'VMungo0540G2468' => 'vmu', 'VMungo1080G0390' => 'vmu', 'VMungo1080G1165' => 'vmu', 'VMungo1127G0170' => 'vmu', 'VMungo1127G2099' => 'vmu', 'VMungo1215G3013' => 'vmu', 'Zm00001eb013110' => 'zma', 'Zm00001eb084260' => 'zma', 'Zm00001eb096110' => 'zma', 'Zm00001eb217510' => 'zma', 'Zm00001eb322550' => 'zma', 'Zm00001eb390770' => 'zma', 'Zm00001eb397170' => 'zma', 'Zm00001eb404610' => 'zma', 'Zm00001eb421790' => 'zma' ), 'gf_id' => 'HOM05D000911', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000911' ), 'data_identifier' => 'HOM05D000911', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000911', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27780' => 'bna', 'A03p35380' => 'bna', 'A04p21160' => 'bna', 'A05p40570' => 'bna', 'A06p26900' => 'bna', 'A08p33230' => 'bna', 'A09p65960' => 'bna', 'A10p18290' => 'bna', 'Aa31LG1G12990' => 'aar', 'Aa31LG1G2980' => 'aar', 'Aa31LG4G14320' => 'aar', 'Aa31LG7G11800' => 'aar', 'Aa31sc36G50' => 'aar', 'Aa31sc36G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3721' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5459' => 'aag', 'Actinidia03028' => 'ach', 'Actinidia03753' => 'ach', 'Actinidia04187' => 'ach', 'Actinidia05509' => 'ach', 'Actinidia24180' => 'ach', 'Actinidia26906' => 'ach', 'Actinidia37097' => 'ach', 'Actinidia38249' => 'ach', 'Ah.01g003470' => 'amhyb', 'Ah.01g004580' => 'amhyb', 'Ah.01g014850' => 'amhyb', 'Ah.01g016830' => 'amhyb', 'Ah.14g088000' => 'amhyb', 'AL1G22980' => 'aly', 'AL3G18990' => 'aly', 'AL4G22440' => 'aly', 'AL4G33180' => 'aly', 'AL5G22920' => 'aly', 'AL6G33660' => 'aly', 'AL8G20720' => 'aly', 'Aqoxy1G00935' => 'aox', 'Aqoxy1G02094' => 'aox', 'Aqoxy2G01239' => 'aox', 'Aqoxy4G01870' => 'aox', 'Aqoxy7G00450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.36ZVTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71EM27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5D6C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH3WRE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3NCM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RIM768' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YB5YRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z36GDV' => 'arhy', 'AT1G08250' => 'ath', 'AT1G11790' => 'ath', 'AT2G27820' => 'ath', 'AT3G07630' => 'ath', 'AT3G44720' => 'ath', 'AT5G22630' => 'ath', 'ATR0693G304' => 'atr', 'ATR0794G109' => 'atr', 'ATR0820G120' => 'atr', 'ATR1159G064' => 'atr', 'Atru.chr10.2239' => 'acertr', 'Atru.chr3.3371' => 'acertr', 'Atru.chr6.3202' => 'acertr', 'AUR62006499' => 'cqu', 'AUR62012718' => 'cqu', 'AUR62021938' => 'cqu', 'AUR62023932' => 'cqu', 'AUR62025034' => 'cqu', 'AUR62025035' => 'cqu', 'AUR62038307' => 'cqu', 'AUR62043466' => 'cqu', 'BcaB02g10748' => 'bca', 'BcaB03g13231' => 'bca', 'BcaB03g14689' => 'bca', 'BcaB05g22716' => 'bca', 'BcaB06g28172' => 'bca', 'BcaB08g36413' => 'bca', 'BcaC01g02186' => 'bca', 'BcaC01g04272' => 'bca', 'BcaC02g08080' => 'bca', 'BcaC02g08227' => 'bca', 'BcaC03g13901' => 'bca', 'BcaC04g19593' => 'bca', 'BcaC04g20874' => 'bca', 'BcaC05g29557' => 'bca', 'BcaC06g35505' => 'bca', 'BcaC07g41954' => 'bca', 'BcaC07g41955' => 'bca', 'BcaC07g41956' => 'bca', 'BcaC07g42519' => 'bca', 'BcaC07g42520' => 'bca', 'BcaC07g42523' => 'bca', 'BcaC07g42524' => 'bca', 'BcaC07g42525' => 'bca', 'BcaC08g47480' => 'bca', 'BcaC08g47481' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00530' => 'bna', 'BolC2t07178H' => 'bol', 'BolC3t16567H' => 'bol', 'BolC4t27234H' => 'bol', 'BolC5t29728H' => 'bol', 'BolC5t34622H' => 'bol', 'BolC6t40321H' => 'bol', 'BolC7t42028H' => 'bol', 'BolC8t49125H' => 'bol', 'BolC8t52538H' => 'bol', 'BolC8t52539H' => 'bol', 'BolC9t56681H' => 'bol', 'BolC9t58266H' => 'bol', 'BolSC21t60294H' => 'bol', 'BraA02t05670Z' => 'bra', 'BraA03t12716Z' => 'bra', 'BraA04t17685Z' => 'bra', 'BraA05t22788Z' => 'bra', 'BraA06t24032Z' => 'bra', 'BraA06t25625Z' => 'bra', 'BraA07t27930Z' => 'bra', 'BraA08t35242Z' => 'bra', 'BraA09t38609Z' => 'bra', 'BraA10t43905Z' => 'bra', 'C02p11060' => 'bna', 'C03p42990' => 'bna', 'C03p67310' => 'bna', 'C04p56990' => 'bna', 'C04p58660' => 'bna', 'C05p09890' => 'bna', 'C05p59680' => 'bna', 'C06p19830' => 'bna', 'C06p53040' => 'bna', 'C07p15230' => 'bna', 'C08p50070' => 'bna', 'C08p50090' => 'bna', 'C09p38330' => 'bna', 'C09p53940' => 'bna', 'CAN.G1014.1' => 'can', 'CAN.G644.30' => 'can', 'CAN.G84.47' => 'can', 'CAN.G919.8' => 'can', 'CANSAT54G0113' => 'cansat', 'CANSAT54G1286' => 'cansat', 'CANSAT64G1020' => 'cansat', 'CARHR008080' => 'chi', 'CARHR008090' => 'chi', 'CARHR012130' => 'chi', 'CARHR038390' => 'chi', 'CARHR082330' => 'chi', 'CARHR120520' => 'chi', 'CARHR151470' => 'chi', 'CARHR190950' => 'chi', 'Carub.0001s0760' => 'cru', 'Carub.0001s1146' => 'cru', 'Carub.0003s0721' => 'cru', 'Carub.0004s0858' => 'cru', 'Carub.0005s1040' => 'cru', 'Carub.0006s2035' => 'cru', 'Carub.0015s0005' => 'cru', 'Ca_01607_v3' => 'car', 'Ca_01677_v3' => 'car', 'Ca_06087_v3' => 'car', 'Ca_19238_v3' => 'car', 'Ca_19373_v3' => 'car', 'Ca_21079_v3' => 'car', 'CBR_g54016' => 'cbr', 'CBR_g54018' => 'cbr', 'CBR_g54020' => 'cbr', 'Cc01_g09780' => 'ccan', 'Cc01_g11680' => 'ccan', 'Cc02_g15610' => 'ccan', 'Cc05_g04350' => 'ccan', 'Cc09_g01580' => 'ccan', 'CDE01G0795' => 'cde', 'CDE02G2024' => 'cde', 'CDE02G2260' => 'cde', 'CDE02G4561' => 'cde', 'CDE05G2733' => 'cde', 'CDE05G3422' => 'cde', 'CDE06G2003' => 'cde', 'CDE08G0576' => 'cde', 'CDE09G0048' => 'cde', 'CDE11G0805' => 'cde', 'Cfa003644' => 'cfa', 'Cfa006290' => 'cfa', 'Cfa010080' => 'cfa', 'Cfa011376' => 'cfa', 'Cfa011576' => 'cfa', 'Cfa011577' => 'cfa', 'Cfa014389' => 'cfa', 'Ciclev10006044m.g' => 'ccl', 'Ciclev10006954m.g' => 'ccl', 'Ciclev10015131m.g' => 'ccl', 'Ciclev10015580m.g' => 'ccl', 'Ciclev10028359m.g' => 'ccl', 'Ciclev10028573m.g' => 'ccl', 'CiPaw.03G159300' => 'cil', 'CiPaw.04G115100' => 'cil', 'CiPaw.09G092800' => 'cil', 'CiPaw.10G071800' => 'cil', 'CiPaw.13G105800' => 'cil', 'CiPaw.13G141000' => 'cil', 'CiPaw.14G103400' => 'cil', 'ClCG01G012700' => 'cla', 'ClCG01G012720' => 'cla', 'ClCG01G021920' => 'cla', 'ClCG02G008870' => 'cla', 'ClCG02G020840' => 'cla', 'ClCG02G021930' => 'cla', 'COL.COLO4_19302' => 'col', 'COL.COLO4_25262' => 'col', 'COL.COLO4_31788' => 'col', 'Cpa.g.c34684' => 'cpa', 'Cpa.g.c36520.1' => 'cpa', 'Cpa.g.c45626' => 'cpa', 'Cpa.g.sc121.17' => 'cpa', 'Cpa.g.sc13.22' => 'cpa', 'Cpa.g.sc87.88' => 'cpa', 'Cre06.g261800' => 'cre', 'CsaV3_1G014500' => 'csa', 'CsaV3_1G014510' => 'csa', 'CsaV3_2G034880' => 'csa', 'CsaV3_6G014760' => 'csa', 'CsaV3_6G021500' => 'csa', 'CsaV3_6G048980' => 'csa', 'CSS0002511' => 'camsi', 'CSS0007556' => 'camsi', 'CSS0008532' => 'camsi', 'CSS0009709' => 'camsi', 'CSS0010486' => 'camsi', 'CSS0016768' => 'camsi', 'CSS0023512' => 'camsi', 'CSS0025341' => 'camsi', 'CSS0027999' => 'camsi', 'CSS0028944' => 'camsi', 'CSS0032292' => 'camsi', 'CSS0032464' => 'camsi', 'CSS0037153' => 'camsi', 'CSS0039256' => 'camsi', 'CSS0048392' => 'camsi', 'CSS0050458' => 'camsi', 'DCAR_004224' => 'dca', 'DCAR_006147' => 'dca', 'DCAR_006465' => 'dca', 'DCAR_008159' => 'dca', 'DCAR_012164' => 'dca', 'DCAR_019764' => 'dca', 'Dinv05418' => 'din', 'Dinv10839' => 'din', 'Dinv12521' => 'din', 'Dinv13900' => 'din', 'Dinv29426' => 'din', 'Duzib150G0263' => 'dzi', 'Duzib168G1178' => 'dzi', 'Duzib168G1924' => 'dzi', 'Duzib170G0299' => 'dzi', 'Duzib170G0813' => 'dzi', 'Duzib235G1128' => 'dzi', 'Duzib248G1060' => 'dzi', 'ECA232G1910' => 'eca', 'ECA233G4621' => 'eca', 'ECA238G1216' => 'eca', 'ECA238G1784' => 'eca', 'ECA248G1242' => 'eca', 'EL10Ac8g20071' => 'bvu', 'EL10Ac9g21086' => 'bvu', 'EL10Ac9g22407' => 'bvu', 'EL10Ac9g22412' => 'bvu', 'Eucgr.A01119' => 'egr', 'Eucgr.E04043' => 'egr', 'Eucgr.J00428' => 'egr', 'Eucgr.J00958' => 'egr', 'FAN11G3091' => 'fan', 'FAN11G3651' => 'fan', 'FAN16G2566' => 'fan', 'FAN21G3155' => 'fan', 'FAN21G3400' => 'fan', 'FAN21G3543' => 'fan', 'FAN25G0234' => 'fan', 'FAN25G1422' => 'fan', 'FAN25G3392' => 'fan', 'FvH4_3g01940' => 'fve', 'FvH4_3g29870' => 'fve', 'FvH4_3g33680' => 'fve', 'Glyma.09G004200' => 'gma', 'Glyma.11G151288' => 'gma', 'Glyma.11G189100' => 'gma', 'Glyma.12G072500' => 'gma', 'Glyma.12G085500' => 'gma', 'Glyma.12G181800' => 'gma', 'Glyma.12G193000' => 'gma', 'Glyma.13G309300' => 'gma', 'Glyma.13G319000' => 'gma', 'Glyma.17G012600' => 'gma', 'Gohir.A06G148600' => 'ghi', 'Gohir.A07G115800' => 'ghi', 'Gohir.A08G003600' => 'ghi', 'Gohir.A09G093300' => 'ghi', 'Gohir.A09G105400' => 'ghi', 'Gohir.A09G105500' => 'ghi', 'Gohir.D06G154600' => 'ghi', 'Gohir.D07G120200' => 'ghi', 'Gohir.D08G013900' => 'ghi', 'Gohir.D09G093100' => 'ghi', 'Gohir.D09G102200' => 'ghi', 'Gohir.D09G102300' => 'ghi', 'Gorai.001G129400' => 'gra', 'Gorai.004G008200' => 'gra', 'Gorai.006G109800' => 'gra', 'Gorai.006G119500' => 'gra', 'Gorai.006G121300' => 'gra', 'Gorai.010G180700' => 'gra', 'GSVIVG01012716001' => 'vvi', 'GSVIVG01025118001' => 'vvi', 'GSVIVG01030439001' => 'vvi', 'GSVIVG01031397001' => 'vvi', 'HanXRQChr01g0004201' => 'han', 'HanXRQChr02g0054941' => 'han', 'HanXRQChr05g0141811' => 'han', 'HanXRQChr07g0197751' => 'han', 'HanXRQChr11g0346691' => 'han', 'HanXRQChr13g0396971' => 'han', 'HanXRQChr14g0432951' => 'han', 'HanXRQChr14g0452001' => 'han', 'HanXRQChr15g0496681' => 'han', 'HanXRQChr17g0557491' => 'han', 'HanXRQChr17g0557501' => 'han', 'Haze_06809' => 'cav', 'Haze_12852' => 'cav', 'Haze_15850' => 'cav', 'Haze_23446' => 'cav', 'Haze_23942' => 'cav', 'Haze_23943' => 'cav', 'Hma1.2p1_0091F.1_g046450' => 'hma', 'Hma1.2p1_0128F.1_g059910' => 'hma', 'Hma1.2p1_0249F.1_g102260' => 'hma', 'Hma1.2p1_0453F.1_g156190' => 'hma', 'Hma1.2p1_0695F.1_g204380' => 'hma', 'Hma1.2p1_0749F.1_g212650' => 'hma', 'Hma1.2p1_2156F.1_g315420' => 'hma', 'Hma1.2p1_2686F.1_g326940' => 'hma', 'HPP92_006428' => 'vpl', 'HPP92_012069' => 'vpl', 'HPP92_014129' => 'vpl', 'HPP92_014133' => 'vpl', 'HPP92_017315' => 'vpl', 'HPP92_026445' => 'vpl', 'HPP92_026446' => 'vpl', 'Hund00774' => 'sun', 'Hund07682' => 'sun', 'Hund21413' => 'sun', 'Hund23462' => 'sun', 'Hund23463' => 'sun', 'Lalb_Chr03g0027911' => 'lal', 'Lalb_Chr13g0304271' => 'lal', 'Lalb_Chr19g0137471' => 'lal', 'Lalb_Chr22g0350651' => 'lal', 'Lalb_Chr24g0395151' => 'lal', 'Lj1A1231T40' => 'lonja', 'Lj1A221T48' => 'lonja', 'Lj1C924T12' => 'lonja', 'Lj2C993G6' => 'lonja', 'Lj3g0005790' => 'lja', 'Lj3g0015432' => 'lja', 'Lj3g0017722' => 'lja', 'Lj3g0018497' => 'lja', 'Lj4g0025071' => 'lja', 'Lsat_1_v5_gn_1_129680' => 'lsa', 'Lsat_1_v5_gn_2_25321' => 'lsa', 'Lsat_1_v5_gn_2_95461' => 'lsa', 'Lsat_1_v5_gn_4_159620' => 'lsa', 'Lsat_1_v5_gn_6_41301' => 'lsa', 'Lsat_1_v5_gn_6_74660' => 'lsa', 'Lsat_1_v5_gn_7_11520' => 'lsa', 'Lsat_1_v5_gn_9_67680' => 'lsa', 'Manes.04G008300' => 'mes', 'Manes.04G008400' => 'mes', 'Manes.04G026500' => 'mes', 'Manes.10G135300' => 'mes', 'Manes.11G157300' => 'mes', 'Manes.12G074000' => 'mes', 'Manes.16G006200' => 'mes', 'Manes.17G026400' => 'mes', 'Mapoly0024s0086' => 'mpo', 'Mapoly0024s0087' => 'mpo', 'Mapoly0071s0057' => 'mpo', 'Mapoly0204s0012' => 'mpo', 'MBI04_g37681_MAGBIO' => 'mbi', 'MBI05_g17779_MAGBIO' => 'mbi', 'MBI12_g31184_MAGBIO' => 'mbi', 'MBI17_g11083_MAGBIO' => 'mbi', 'MBI18_g03883_MAGBIO' => 'mbi', 'MBI18_g28940_MAGBIO' => 'mbi', 'MCO01G690' => 'mco', 'MD03G1109900' => 'mdo', 'MD03G1134800' => 'mdo', 'MD05G1348000' => 'mdo', 'MD10G1322400' => 'mdo', 'MD11G1123300' => 'mdo', 'MD11G1157600' => 'mdo', 'Medtr2g084875' => 'mtr', 'Medtr2g088130' => 'mtr', 'Medtr4g055310' => 'mtr', 'Medtr4g061070' => 'mtr', 'Medtr4g132250' => 'mtr', 'MELO3C004795.2' => 'cme', 'MELO3C004797.2' => 'cme', 'MELO3C007396.2' => 'cme', 'MELO3C019277.2' => 'cme', 'MELO3C021449.2' => 'cme', 'MELO3C025736.2' => 'cme', 'Migut.D02175' => 'egut', 'Migut.H01573' => 'egut', 'Migut.M01327' => 'egut', 'Migut.N02513' => 'egut', 'MSTRG.14638' => 'ama', 'MSTRG.18632' => 'ama', 'MSTRG.7203' => 'ama', 'Nitab4.5_0000533g0140' => 'nta', 'Nitab4.5_0000888g0150' => 'nta', 'Nitab4.5_0001453g0040' => 'nta', 'Nitab4.5_0002827g0090' => 'nta', 'Nitab4.5_0003082g0040' => 'nta', 'Nitab4.5_0007799g0040' => 'nta', 'Nitab4.5_0008983g0010' => 'nta', 'Nitab4.5_0009017g0020' => 'nta', 'Nn1g02132' => 'nnu', 'Nn1g03492' => 'nnu', 'Nn1g03493' => 'nnu', 'Nn1g03494' => 'nnu', 'Nn1g07164' => 'nnu', 'Nn1g07291' => 'nnu', 'Nn2g10655' => 'nnu', 'Nn2g11652' => 'nnu', 'Nn2g14008' => 'nnu', 'Nn3g17476' => 'nnu', 'Nn3g17477' => 'nnu', 'Nn4g22370' => 'nnu', 'Nn4g25255' => 'nnu', 'Nn5g27755' => 'nnu', 'Nn6g34260' => 'nnu', 'Nn6g35041' => 'nnu', 'Oeu005924.1' => 'oeu', 'Oeu008383.1' => 'oeu', 'Oeu014928.1' => 'oeu', 'Oeu019889.1' => 'oeu', 'Oeu022271.1' => 'oeu', 'Oeu025271.1' => 'oeu', 'Oeu036302.1' => 'oeu', 'Oeu044100.1' => 'oeu', 'Os01g0528300' => 'osa', 'Os03g0286200' => 'osa', 'Os04g0406600' => 'osa', 'Os07g0512000' => 'osa', 'Os07g0694600' => 'osa', 'Os08g0411000' => 'osa', 'Os09g0565700' => 'osa', 'Os09g0566050' => 'osa', 'Os10g0523700' => 'osa', 'Peaxi162Scf00002g00514' => 'pax', 'Peaxi162Scf00047g01817' => 'pax', 'Peaxi162Scf00114g00001' => 'pax', 'Peaxi162Scf00147g00613' => 'pax', 'Peaxi162Scf00389g00425' => 'pax', 'PGR042G1139' => 'pgr', 'PGR042G3273' => 'pgr', 'PGR102G2180' => 'pgr', 'PGR119G0234' => 'pgr', 'PGR119G0668' => 'pgr', 'PGSC0003DMG400007122' => 'stu', 'PGSC0003DMG400016478' => 'stu', 'PGSC0003DMG400025374' => 'stu', 'PGSC0003DMG400026536' => 'stu', 'Phvul.003G079600' => 'pvu', 'Phvul.005G115600' => 'pvu', 'Phvul.005G127100' => 'pvu', 'Phvul.006G149500' => 'pvu', 'Phvul.006G149600' => 'pvu', 'Phvul.011G071800' => 'pvu', 'Phvul.011G090400' => 'pvu', 'Potri.004G013400' => 'ptr', 'Potri.004G188100' => 'ptr', 'Potri.008G195500' => 'ptr', 'Potri.009G148800' => 'ptr', 'Potri.011G004700' => 'ptr', 'Pp3c17_22810' => 'ppa', 'Pp3c18_4480' => 'ppa', 'Pp3c19_13030' => 'ppa', 'Pp3c1_33620' => 'ppa', 'Pp3c2_9380' => 'ppa', 'PRCOL_00001023' => 'pco', 'Prupe.3G216300' => 'ppe', 'Prupe.4G019500' => 'ppe', 'Prupe.6G092500' => 'ppe', 'Prupe.6G119200' => 'ppe', 'Psat0s1945g0080' => 'psa', 'Psat0s4167g0040' => 'psa', 'Psat1g185800' => 'psa', 'Psat4g006440' => 'psa', 'Psat4g006480' => 'psa', 'Psat4g168120' => 'psa', 'Psat5g255680' => 'psa', 'Psat5g261760' => 'psa', 'Psat7g222120' => 'psa', 'PSO063G7252' => 'pso', 'PSO170G4778' => 'pso', 'PSO210G2249' => 'pso', 'PSO339G2411' => 'pso', 'PSO339G2457' => 'pso', 'PSO339G2854' => 'pso', 'PSO339G4288' => 'pso', 'PSO339G4615' => 'pso', 'PSO384G2796' => 'pso', 'PSO384G2940' => 'pso', 'PSO384G4227' => 'pso', 'PSO478G1425' => 'pso', 'PSO541G3863' => 'pso', 'PSO675G0507' => 'pso', 'PSO782G0338' => 'pso', 'PSO832G0644' => 'pso', 'QL01p013664' => 'qlo', 'QL01p036598' => 'qlo', 'QL05p072984' => 'qlo', 'QL08p005768' => 'qlo', 'QL08p032743' => 'qlo', 'QL93p0073_0439' => 'qlo', 'QL93p0073_0444' => 'qlo', 'RcHm_v2.0_Chr5g0002851' => 'rch', 'RcHm_v2.0_Chr5g0055201' => 'rch', 'RcHm_v2.0_Chr5g0061191' => 'rch', 'RcHm_v2.0_Chr7g0203231' => 'rch', 'Rhsim01G0208100' => 'rsi', 'Rhsim01G0208200' => 'rsi', 'Rhsim02G0106500' => 'rsi', 'Rhsim03G0107900' => 'rsi', 'Rhsim06G0163400' => 'rsi', 'Rhsim13G0105200' => 'rsi', 'Sabra04G0006300' => 'sbr', 'Sabra04G0127000' => 'sbr', 'Sabra08G0148700' => 'sbr', 'Sabra09G0117400' => 'sbr', 'SalBow1G3326' => 'sbo', 'SalBow3G3228' => 'sbo', 'SalBow6G1634' => 'sbo', 'SalBow6G3603' => 'sbo', 'SalBow6G5266' => 'sbo', 'SalBow7G2265' => 'sbo', 'SalBow8G0850' => 'sbo', 'SalBow8G2592' => 'sbo', 'Sc05g0009240' => 'sci', 'Sc12g0002300' => 'sci', 'Sc21g0000100' => 'sci', 'Sc21g0004720' => 'sci', 'Sed0002949' => 'sed', 'Sed0004114' => 'sed', 'Sed0004306' => 'sed', 'Sed0006172' => 'sed', 'Sed0008413' => 'sed', 'Sed0013809' => 'sed', 'Sed0019556' => 'sed', 'SEGI_03570' => 'sgi', 'SEGI_07859' => 'sgi', 'SEGI_15042' => 'sgi', 'SEGI_16263' => 'sgi', 'SEGI_16552' => 'sgi', 'SEGI_24331' => 'sgi', 'SEGI_27316' => 'sgi', 'SEGI_29521' => 'sgi', 'SEGI_41342' => 'sgi', 'SGA_v2.0_scaffold27G11617' => 'sas', 'SGA_v2.0_scaffold316G48428' => 'sas', 'SGA_v2.0_scaffold49G18261' => 'sas', 'SGA_v2.0_scaffold7G03831' => 'sas', 'SGA_v2.0_scaffold93G28359' => 'sas', 'SHI02210' => 'shi', 'SHI06028' => 'shi', 'SHI06321' => 'shi', 'SMO111G0012' => 'smo', 'SMO228G0080' => 'smo', 'SMO356G0756' => 'smo', 'Solyc02g080620.3' => 'sly', 'Solyc06g074530.1' => 'sly', 'Solyc11g066890.1' => 'sly', 'Solyc11g072520.3' => 'sly', 'Sopen02g025330' => 'spe', 'Sopen06g031000' => 'spe', 'Sopen09g008240' => 'spe', 'Sopen09g025210' => 'spe', 'Sopen11g026600' => 'spe', 'Sopen11g030170' => 'spe', 'Sp1g10420' => 'spa', 'Sp3g06570' => 'spa', 'Sp4g10660' => 'spa', 'Sp5g16460' => 'spa', 'Sp6g22710' => 'spa', 'TAR365G0112' => 'tar', 'TAR369G0717' => 'tar', 'TAR374G0976' => 'tar', 'TAR623G1128' => 'tar', 'TAR626G1937' => 'tar', 'TAR627G0123' => 'tar', 'TAR628G0305' => 'tar', 'TAR636G1176' => 'tar', 'TAR636G2442' => 'tar', 'THA.LOC104800556' => 'tha', 'THA.LOC104809501' => 'tha', 'THA.LOC104815126' => 'tha', 'THA.LOC104815732' => 'tha', 'THA.LOC104823528' => 'tha', 'Thecc.02G365600' => 'tca', 'Thecc.06G222300' => 'tca', 'Thecc.09G261800' => 'tca', 'Thecc.09G291400' => 'tca', 'Thhalv10003028m.g' => 'esa', 'Thhalv10007886m.g' => 'esa', 'Thhalv10016085m.g' => 'esa', 'Thhalv10016681m.g' => 'esa', 'Thhalv10020951m.g' => 'esa', 'TPR.G15598' => 'tpr', 'TPR.G29305' => 'tpr', 'TPR.G32395' => 'tpr', 'TPR.G36998' => 'tpr', 'TPR.G4227' => 'tpr', 'TWI18G1433' => 'twi', 'TWI31G0755' => 'twi', 'TWI38G0912' => 'twi', 'TWI75G1097' => 'twi', 'TWI75G1619' => 'twi', 'TWI79G1336' => 'twi', 'unitig_0.g943' => 'ugi', 'unitig_0.g944' => 'ugi', 'unitig_22.g6646' => 'ugi', 'unitig_37.g12681' => 'ugi', 'unitig_8.g3290' => 'ugi', 'vmacro03278' => 'vma', 'vmacro12197' => 'vma', 'vmacro14478' => 'vma', 'vmacro15787' => 'vma', 'vmacro15789' => 'vma', 'vmacro15790' => 'vma', 'vmacro15806' => 'vma', 'vmacro22907' => 'vma', 'vmacro22908' => 'vma', 'vmacro22909' => 'vma', 'vmacro23108' => 'vma', 'VMungo0540G0540' => 'vmu', 'VMungo0540G2468' => 'vmu', 'VMungo1080G0390' => 'vmu', 'VMungo1080G1165' => 'vmu', 'VMungo1127G0170' => 'vmu', 'VMungo1127G2099' => 'vmu', 'VMungo1215G3013' => 'vmu', 'Zm00001eb013110' => 'zma', 'Zm00001eb084260' => 'zma', 'Zm00001eb096110' => 'zma', 'Zm00001eb217510' => 'zma', 'Zm00001eb322550' => 'zma', 'Zm00001eb390770' => 'zma', 'Zm00001eb397170' => 'zma', 'Zm00001eb404610' => 'zma', 'Zm00001eb421790' => 'zma' ) $gf_id = 'HOM05D000911' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000911' ) $data_identifier = 'HOM05D000911' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 16, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 5, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 6, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 8, 'nnu' => (int) 16, 'oeu' => (int) 8, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 5, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 16, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421790' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000911', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27780' => 'bna', 'A03p35380' => 'bna', 'A04p21160' => 'bna', 'A05p40570' => 'bna', 'A06p26900' => 'bna', 'A08p33230' => 'bna', 'A09p65960' => 'bna', 'A10p18290' => 'bna', 'Aa31LG1G12990' => 'aar', 'Aa31LG1G2980' => 'aar', 'Aa31LG4G14320' => 'aar', 'Aa31LG7G11800' => 'aar', 'Aa31sc36G50' => 'aar', 'Aa31sc36G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3721' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5459' => 'aag', 'Actinidia03028' => 'ach', 'Actinidia03753' => 'ach', 'Actinidia04187' => 'ach', 'Actinidia05509' => 'ach', 'Actinidia24180' => 'ach', 'Actinidia26906' => 'ach', 'Actinidia37097' => 'ach', 'Actinidia38249' => 'ach', 'Ah.01g003470' => 'amhyb', 'Ah.01g004580' => 'amhyb', 'Ah.01g014850' => 'amhyb', 'Ah.01g016830' => 'amhyb', 'Ah.14g088000' => 'amhyb', 'AL1G22980' => 'aly', 'AL3G18990' => 'aly', 'AL4G22440' => 'aly', 'AL4G33180' => 'aly', 'AL5G22920' => 'aly', 'AL6G33660' => 'aly', 'AL8G20720' => 'aly', 'Aqoxy1G00935' => 'aox', 'Aqoxy1G02094' => 'aox', 'Aqoxy2G01239' => 'aox', 'Aqoxy4G01870' => 'aox', 'Aqoxy7G00450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.36ZVTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71EM27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5D6C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH3WRE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3NCM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RIM768' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YB5YRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z36GDV' => 'arhy', 'AT1G08250' => 'ath', 'AT1G11790' => 'ath', 'AT2G27820' => 'ath', 'AT3G07630' => 'ath', 'AT3G44720' => 'ath', 'AT5G22630' => 'ath', 'ATR0693G304' => 'atr', 'ATR0794G109' => 'atr', 'ATR0820G120' => 'atr', 'ATR1159G064' => 'atr', 'Atru.chr10.2239' => 'acertr', 'Atru.chr3.3371' => 'acertr', 'Atru.chr6.3202' => 'acertr', 'AUR62006499' => 'cqu', 'AUR62012718' => 'cqu', 'AUR62021938' => 'cqu', 'AUR62023932' => 'cqu', 'AUR62025034' => 'cqu', 'AUR62025035' => 'cqu', 'AUR62038307' => 'cqu', 'AUR62043466' => 'cqu', 'BcaB02g10748' => 'bca', 'BcaB03g13231' => 'bca', 'BcaB03g14689' => 'bca', 'BcaB05g22716' => 'bca', 'BcaB06g28172' => 'bca', 'BcaB08g36413' => 'bca', 'BcaC01g02186' => 'bca', 'BcaC01g04272' => 'bca', 'BcaC02g08080' => 'bca', 'BcaC02g08227' => 'bca', 'BcaC03g13901' => 'bca', 'BcaC04g19593' => 'bca', 'BcaC04g20874' => 'bca', 'BcaC05g29557' => 'bca', 'BcaC06g35505' => 'bca', 'BcaC07g41954' => 'bca', 'BcaC07g41955' => 'bca', 'BcaC07g41956' => 'bca', 'BcaC07g42519' => 'bca', 'BcaC07g42520' => 'bca', 'BcaC07g42523' => 'bca', 'BcaC07g42524' => 'bca', 'BcaC07g42525' => 'bca', 'BcaC08g47480' => 'bca', 'BcaC08g47481' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00530' => 'bna', 'BolC2t07178H' => 'bol', 'BolC3t16567H' => 'bol', 'BolC4t27234H' => 'bol', 'BolC5t29728H' => 'bol', 'BolC5t34622H' => 'bol', 'BolC6t40321H' => 'bol', 'BolC7t42028H' => 'bol', 'BolC8t49125H' => 'bol', 'BolC8t52538H' => 'bol', 'BolC8t52539H' => 'bol', 'BolC9t56681H' => 'bol', 'BolC9t58266H' => 'bol', 'BolSC21t60294H' => 'bol', 'BraA02t05670Z' => 'bra', 'BraA03t12716Z' => 'bra', 'BraA04t17685Z' => 'bra', 'BraA05t22788Z' => 'bra', 'BraA06t24032Z' => 'bra', 'BraA06t25625Z' => 'bra', 'BraA07t27930Z' => 'bra', 'BraA08t35242Z' => 'bra', 'BraA09t38609Z' => 'bra', 'BraA10t43905Z' => 'bra', 'C02p11060' => 'bna', 'C03p42990' => 'bna', 'C03p67310' => 'bna', 'C04p56990' => 'bna', 'C04p58660' => 'bna', 'C05p09890' => 'bna', 'C05p59680' => 'bna', 'C06p19830' => 'bna', 'C06p53040' => 'bna', 'C07p15230' => 'bna', 'C08p50070' => 'bna', 'C08p50090' => 'bna', 'C09p38330' => 'bna', 'C09p53940' => 'bna', 'CAN.G1014.1' => 'can', 'CAN.G644.30' => 'can', 'CAN.G84.47' => 'can', 'CAN.G919.8' => 'can', 'CANSAT54G0113' => 'cansat', 'CANSAT54G1286' => 'cansat', 'CANSAT64G1020' => 'cansat', 'CARHR008080' => 'chi', 'CARHR008090' => 'chi', 'CARHR012130' => 'chi', 'CARHR038390' => 'chi', 'CARHR082330' => 'chi', 'CARHR120520' => 'chi', 'CARHR151470' => 'chi', 'CARHR190950' => 'chi', 'Carub.0001s0760' => 'cru', 'Carub.0001s1146' => 'cru', 'Carub.0003s0721' => 'cru', 'Carub.0004s0858' => 'cru', 'Carub.0005s1040' => 'cru', 'Carub.0006s2035' => 'cru', 'Carub.0015s0005' => 'cru', 'Ca_01607_v3' => 'car', 'Ca_01677_v3' => 'car', 'Ca_06087_v3' => 'car', 'Ca_19238_v3' => 'car', 'Ca_19373_v3' => 'car', 'Ca_21079_v3' => 'car', 'CBR_g54016' => 'cbr', 'CBR_g54018' => 'cbr', 'CBR_g54020' => 'cbr', 'Cc01_g09780' => 'ccan', 'Cc01_g11680' => 'ccan', 'Cc02_g15610' => 'ccan', 'Cc05_g04350' => 'ccan', 'Cc09_g01580' => 'ccan', 'CDE01G0795' => 'cde', 'CDE02G2024' => 'cde', 'CDE02G2260' => 'cde', 'CDE02G4561' => 'cde', 'CDE05G2733' => 'cde', 'CDE05G3422' => 'cde', 'CDE06G2003' => 'cde', 'CDE08G0576' => 'cde', 'CDE09G0048' => 'cde', 'CDE11G0805' => 'cde', 'Cfa003644' => 'cfa', 'Cfa006290' => 'cfa', 'Cfa010080' => 'cfa', 'Cfa011376' => 'cfa', 'Cfa011576' => 'cfa', 'Cfa011577' => 'cfa', 'Cfa014389' => 'cfa', 'Ciclev10006044m.g' => 'ccl', 'Ciclev10006954m.g' => 'ccl', 'Ciclev10015131m.g' => 'ccl', 'Ciclev10015580m.g' => 'ccl', 'Ciclev10028359m.g' => 'ccl', 'Ciclev10028573m.g' => 'ccl', 'CiPaw.03G159300' => 'cil', 'CiPaw.04G115100' => 'cil', 'CiPaw.09G092800' => 'cil', 'CiPaw.10G071800' => 'cil', 'CiPaw.13G105800' => 'cil', 'CiPaw.13G141000' => 'cil', 'CiPaw.14G103400' => 'cil', 'ClCG01G012700' => 'cla', 'ClCG01G012720' => 'cla', 'ClCG01G021920' => 'cla', 'ClCG02G008870' => 'cla', 'ClCG02G020840' => 'cla', 'ClCG02G021930' => 'cla', 'COL.COLO4_19302' => 'col', 'COL.COLO4_25262' => 'col', 'COL.COLO4_31788' => 'col', 'Cpa.g.c34684' => 'cpa', 'Cpa.g.c36520.1' => 'cpa', 'Cpa.g.c45626' => 'cpa', 'Cpa.g.sc121.17' => 'cpa', 'Cpa.g.sc13.22' => 'cpa', 'Cpa.g.sc87.88' => 'cpa', 'Cre06.g261800' => 'cre', 'CsaV3_1G014500' => 'csa', 'CsaV3_1G014510' => 'csa', 'CsaV3_2G034880' => 'csa', 'CsaV3_6G014760' => 'csa', 'CsaV3_6G021500' => 'csa', 'CsaV3_6G048980' => 'csa', 'CSS0002511' => 'camsi', 'CSS0007556' => 'camsi', 'CSS0008532' => 'camsi', 'CSS0009709' => 'camsi', 'CSS0010486' => 'camsi', 'CSS0016768' => 'camsi', 'CSS0023512' => 'camsi', 'CSS0025341' => 'camsi', 'CSS0027999' => 'camsi', 'CSS0028944' => 'camsi', 'CSS0032292' => 'camsi', 'CSS0032464' => 'camsi', 'CSS0037153' => 'camsi', 'CSS0039256' => 'camsi', 'CSS0048392' => 'camsi', 'CSS0050458' => 'camsi', 'DCAR_004224' => 'dca', 'DCAR_006147' => 'dca', 'DCAR_006465' => 'dca', 'DCAR_008159' => 'dca', 'DCAR_012164' => 'dca', 'DCAR_019764' => 'dca', 'Dinv05418' => 'din', 'Dinv10839' => 'din', 'Dinv12521' => 'din', 'Dinv13900' => 'din', 'Dinv29426' => 'din', 'Duzib150G0263' => 'dzi', 'Duzib168G1178' => 'dzi', 'Duzib168G1924' => 'dzi', 'Duzib170G0299' => 'dzi', 'Duzib170G0813' => 'dzi', 'Duzib235G1128' => 'dzi', 'Duzib248G1060' => 'dzi', 'ECA232G1910' => 'eca', 'ECA233G4621' => 'eca', 'ECA238G1216' => 'eca', 'ECA238G1784' => 'eca', 'ECA248G1242' => 'eca', 'EL10Ac8g20071' => 'bvu', 'EL10Ac9g21086' => 'bvu', 'EL10Ac9g22407' => 'bvu', 'EL10Ac9g22412' => 'bvu', 'Eucgr.A01119' => 'egr', 'Eucgr.E04043' => 'egr', 'Eucgr.J00428' => 'egr', 'Eucgr.J00958' => 'egr', 'FAN11G3091' => 'fan', 'FAN11G3651' => 'fan', 'FAN16G2566' => 'fan', 'FAN21G3155' => 'fan', 'FAN21G3400' => 'fan', 'FAN21G3543' => 'fan', 'FAN25G0234' => 'fan', 'FAN25G1422' => 'fan', 'FAN25G3392' => 'fan', 'FvH4_3g01940' => 'fve', 'FvH4_3g29870' => 'fve', 'FvH4_3g33680' => 'fve', 'Glyma.09G004200' => 'gma', 'Glyma.11G151288' => 'gma', 'Glyma.11G189100' => 'gma', 'Glyma.12G072500' => 'gma', 'Glyma.12G085500' => 'gma', 'Glyma.12G181800' => 'gma', 'Glyma.12G193000' => 'gma', 'Glyma.13G309300' => 'gma', 'Glyma.13G319000' => 'gma', 'Glyma.17G012600' => 'gma', 'Gohir.A06G148600' => 'ghi', 'Gohir.A07G115800' => 'ghi', 'Gohir.A08G003600' => 'ghi', 'Gohir.A09G093300' => 'ghi', 'Gohir.A09G105400' => 'ghi', 'Gohir.A09G105500' => 'ghi', 'Gohir.D06G154600' => 'ghi', 'Gohir.D07G120200' => 'ghi', 'Gohir.D08G013900' => 'ghi', 'Gohir.D09G093100' => 'ghi', 'Gohir.D09G102200' => 'ghi', 'Gohir.D09G102300' => 'ghi', 'Gorai.001G129400' => 'gra', 'Gorai.004G008200' => 'gra', 'Gorai.006G109800' => 'gra', 'Gorai.006G119500' => 'gra', 'Gorai.006G121300' => 'gra', 'Gorai.010G180700' => 'gra', 'GSVIVG01012716001' => 'vvi', 'GSVIVG01025118001' => 'vvi', 'GSVIVG01030439001' => 'vvi', 'GSVIVG01031397001' => 'vvi', 'HanXRQChr01g0004201' => 'han', 'HanXRQChr02g0054941' => 'han', 'HanXRQChr05g0141811' => 'han', 'HanXRQChr07g0197751' => 'han', 'HanXRQChr11g0346691' => 'han', 'HanXRQChr13g0396971' => 'han', 'HanXRQChr14g0432951' => 'han', 'HanXRQChr14g0452001' => 'han', 'HanXRQChr15g0496681' => 'han', 'HanXRQChr17g0557491' => 'han', 'HanXRQChr17g0557501' => 'han', 'Haze_06809' => 'cav', 'Haze_12852' => 'cav', 'Haze_15850' => 'cav', 'Haze_23446' => 'cav', 'Haze_23942' => 'cav', 'Haze_23943' => 'cav', 'Hma1.2p1_0091F.1_g046450' => 'hma', 'Hma1.2p1_0128F.1_g059910' => 'hma', 'Hma1.2p1_0249F.1_g102260' => 'hma', 'Hma1.2p1_0453F.1_g156190' => 'hma', 'Hma1.2p1_0695F.1_g204380' => 'hma', 'Hma1.2p1_0749F.1_g212650' => 'hma', 'Hma1.2p1_2156F.1_g315420' => 'hma', 'Hma1.2p1_2686F.1_g326940' => 'hma', 'HPP92_006428' => 'vpl', 'HPP92_012069' => 'vpl', 'HPP92_014129' => 'vpl', 'HPP92_014133' => 'vpl', 'HPP92_017315' => 'vpl', 'HPP92_026445' => 'vpl', 'HPP92_026446' => 'vpl', 'Hund00774' => 'sun', 'Hund07682' => 'sun', 'Hund21413' => 'sun', 'Hund23462' => 'sun', 'Hund23463' => 'sun', 'Lalb_Chr03g0027911' => 'lal', 'Lalb_Chr13g0304271' => 'lal', 'Lalb_Chr19g0137471' => 'lal', 'Lalb_Chr22g0350651' => 'lal', 'Lalb_Chr24g0395151' => 'lal', 'Lj1A1231T40' => 'lonja', 'Lj1A221T48' => 'lonja', 'Lj1C924T12' => 'lonja', 'Lj2C993G6' => 'lonja', 'Lj3g0005790' => 'lja', 'Lj3g0015432' => 'lja', 'Lj3g0017722' => 'lja', 'Lj3g0018497' => 'lja', 'Lj4g0025071' => 'lja', 'Lsat_1_v5_gn_1_129680' => 'lsa', 'Lsat_1_v5_gn_2_25321' => 'lsa', 'Lsat_1_v5_gn_2_95461' => 'lsa', 'Lsat_1_v5_gn_4_159620' => 'lsa', 'Lsat_1_v5_gn_6_41301' => 'lsa', 'Lsat_1_v5_gn_6_74660' => 'lsa', 'Lsat_1_v5_gn_7_11520' => 'lsa', 'Lsat_1_v5_gn_9_67680' => 'lsa', 'Manes.04G008300' => 'mes', 'Manes.04G008400' => 'mes', 'Manes.04G026500' => 'mes', 'Manes.10G135300' => 'mes', 'Manes.11G157300' => 'mes', 'Manes.12G074000' => 'mes', 'Manes.16G006200' => 'mes', 'Manes.17G026400' => 'mes', 'Mapoly0024s0086' => 'mpo', 'Mapoly0024s0087' => 'mpo', 'Mapoly0071s0057' => 'mpo', 'Mapoly0204s0012' => 'mpo', 'MBI04_g37681_MAGBIO' => 'mbi', 'MBI05_g17779_MAGBIO' => 'mbi', 'MBI12_g31184_MAGBIO' => 'mbi', 'MBI17_g11083_MAGBIO' => 'mbi', 'MBI18_g03883_MAGBIO' => 'mbi', 'MBI18_g28940_MAGBIO' => 'mbi', 'MCO01G690' => 'mco', 'MD03G1109900' => 'mdo', 'MD03G1134800' => 'mdo', 'MD05G1348000' => 'mdo', 'MD10G1322400' => 'mdo', 'MD11G1123300' => 'mdo', 'MD11G1157600' => 'mdo', 'Medtr2g084875' => 'mtr', 'Medtr2g088130' => 'mtr', 'Medtr4g055310' => 'mtr', 'Medtr4g061070' => 'mtr', 'Medtr4g132250' => 'mtr', 'MELO3C004795.2' => 'cme', 'MELO3C004797.2' => 'cme', 'MELO3C007396.2' => 'cme', 'MELO3C019277.2' => 'cme', 'MELO3C021449.2' => 'cme', 'MELO3C025736.2' => 'cme', 'Migut.D02175' => 'egut', 'Migut.H01573' => 'egut', 'Migut.M01327' => 'egut', 'Migut.N02513' => 'egut', 'MSTRG.14638' => 'ama', 'MSTRG.18632' => 'ama', 'MSTRG.7203' => 'ama', 'Nitab4.5_0000533g0140' => 'nta', 'Nitab4.5_0000888g0150' => 'nta', 'Nitab4.5_0001453g0040' => 'nta', 'Nitab4.5_0002827g0090' => 'nta', 'Nitab4.5_0003082g0040' => 'nta', 'Nitab4.5_0007799g0040' => 'nta', 'Nitab4.5_0008983g0010' => 'nta', 'Nitab4.5_0009017g0020' => 'nta', 'Nn1g02132' => 'nnu', 'Nn1g03492' => 'nnu', 'Nn1g03493' => 'nnu', 'Nn1g03494' => 'nnu', 'Nn1g07164' => 'nnu', 'Nn1g07291' => 'nnu', 'Nn2g10655' => 'nnu', 'Nn2g11652' => 'nnu', 'Nn2g14008' => 'nnu', 'Nn3g17476' => 'nnu', 'Nn3g17477' => 'nnu', 'Nn4g22370' => 'nnu', 'Nn4g25255' => 'nnu', 'Nn5g27755' => 'nnu', 'Nn6g34260' => 'nnu', 'Nn6g35041' => 'nnu', 'Oeu005924.1' => 'oeu', 'Oeu008383.1' => 'oeu', 'Oeu014928.1' => 'oeu', 'Oeu019889.1' => 'oeu', 'Oeu022271.1' => 'oeu', 'Oeu025271.1' => 'oeu', 'Oeu036302.1' => 'oeu', 'Oeu044100.1' => 'oeu', 'Os01g0528300' => 'osa', 'Os03g0286200' => 'osa', 'Os04g0406600' => 'osa', 'Os07g0512000' => 'osa', 'Os07g0694600' => 'osa', 'Os08g0411000' => 'osa', 'Os09g0565700' => 'osa', 'Os09g0566050' => 'osa', 'Os10g0523700' => 'osa', 'Peaxi162Scf00002g00514' => 'pax', 'Peaxi162Scf00047g01817' => 'pax', 'Peaxi162Scf00114g00001' => 'pax', 'Peaxi162Scf00147g00613' => 'pax', 'Peaxi162Scf00389g00425' => 'pax', 'PGR042G1139' => 'pgr', 'PGR042G3273' => 'pgr', 'PGR102G2180' => 'pgr', 'PGR119G0234' => 'pgr', 'PGR119G0668' => 'pgr', 'PGSC0003DMG400007122' => 'stu', 'PGSC0003DMG400016478' => 'stu', 'PGSC0003DMG400025374' => 'stu', 'PGSC0003DMG400026536' => 'stu', 'Phvul.003G079600' => 'pvu', 'Phvul.005G115600' => 'pvu', 'Phvul.005G127100' => 'pvu', 'Phvul.006G149500' => 'pvu', 'Phvul.006G149600' => 'pvu', 'Phvul.011G071800' => 'pvu', 'Phvul.011G090400' => 'pvu', 'Potri.004G013400' => 'ptr', 'Potri.004G188100' => 'ptr', 'Potri.008G195500' => 'ptr', 'Potri.009G148800' => 'ptr', 'Potri.011G004700' => 'ptr', 'Pp3c17_22810' => 'ppa', 'Pp3c18_4480' => 'ppa', 'Pp3c19_13030' => 'ppa', 'Pp3c1_33620' => 'ppa', 'Pp3c2_9380' => 'ppa', 'PRCOL_00001023' => 'pco', 'Prupe.3G216300' => 'ppe', 'Prupe.4G019500' => 'ppe', 'Prupe.6G092500' => 'ppe', 'Prupe.6G119200' => 'ppe', 'Psat0s1945g0080' => 'psa', 'Psat0s4167g0040' => 'psa', 'Psat1g185800' => 'psa', 'Psat4g006440' => 'psa', 'Psat4g006480' => 'psa', 'Psat4g168120' => 'psa', 'Psat5g255680' => 'psa', 'Psat5g261760' => 'psa', 'Psat7g222120' => 'psa', 'PSO063G7252' => 'pso', 'PSO170G4778' => 'pso', 'PSO210G2249' => 'pso', 'PSO339G2411' => 'pso', 'PSO339G2457' => 'pso', 'PSO339G2854' => 'pso', 'PSO339G4288' => 'pso', 'PSO339G4615' => 'pso', 'PSO384G2796' => 'pso', 'PSO384G2940' => 'pso', 'PSO384G4227' => 'pso', 'PSO478G1425' => 'pso', 'PSO541G3863' => 'pso', 'PSO675G0507' => 'pso', 'PSO782G0338' => 'pso', 'PSO832G0644' => 'pso', 'QL01p013664' => 'qlo', 'QL01p036598' => 'qlo', 'QL05p072984' => 'qlo', 'QL08p005768' => 'qlo', 'QL08p032743' => 'qlo', 'QL93p0073_0439' => 'qlo', 'QL93p0073_0444' => 'qlo', 'RcHm_v2.0_Chr5g0002851' => 'rch', 'RcHm_v2.0_Chr5g0055201' => 'rch', 'RcHm_v2.0_Chr5g0061191' => 'rch', 'RcHm_v2.0_Chr7g0203231' => 'rch', 'Rhsim01G0208100' => 'rsi', 'Rhsim01G0208200' => 'rsi', 'Rhsim02G0106500' => 'rsi', 'Rhsim03G0107900' => 'rsi', 'Rhsim06G0163400' => 'rsi', 'Rhsim13G0105200' => 'rsi', 'Sabra04G0006300' => 'sbr', 'Sabra04G0127000' => 'sbr', 'Sabra08G0148700' => 'sbr', 'Sabra09G0117400' => 'sbr', 'SalBow1G3326' => 'sbo', 'SalBow3G3228' => 'sbo', 'SalBow6G1634' => 'sbo', 'SalBow6G3603' => 'sbo', 'SalBow6G5266' => 'sbo', 'SalBow7G2265' => 'sbo', 'SalBow8G0850' => 'sbo', 'SalBow8G2592' => 'sbo', 'Sc05g0009240' => 'sci', 'Sc12g0002300' => 'sci', 'Sc21g0000100' => 'sci', 'Sc21g0004720' => 'sci', 'Sed0002949' => 'sed', 'Sed0004114' => 'sed', 'Sed0004306' => 'sed', 'Sed0006172' => 'sed', 'Sed0008413' => 'sed', 'Sed0013809' => 'sed', 'Sed0019556' => 'sed', 'SEGI_03570' => 'sgi', 'SEGI_07859' => 'sgi', 'SEGI_15042' => 'sgi', 'SEGI_16263' => 'sgi', 'SEGI_16552' => 'sgi', 'SEGI_24331' => 'sgi', 'SEGI_27316' => 'sgi', 'SEGI_29521' => 'sgi', 'SEGI_41342' => 'sgi', 'SGA_v2.0_scaffold27G11617' => 'sas', 'SGA_v2.0_scaffold316G48428' => 'sas', 'SGA_v2.0_scaffold49G18261' => 'sas', 'SGA_v2.0_scaffold7G03831' => 'sas', 'SGA_v2.0_scaffold93G28359' => 'sas', 'SHI02210' => 'shi', 'SHI06028' => 'shi', 'SHI06321' => 'shi', 'SMO111G0012' => 'smo', 'SMO228G0080' => 'smo', 'SMO356G0756' => 'smo', 'Solyc02g080620.3' => 'sly', 'Solyc06g074530.1' => 'sly', 'Solyc11g066890.1' => 'sly', 'Solyc11g072520.3' => 'sly', 'Sopen02g025330' => 'spe', 'Sopen06g031000' => 'spe', 'Sopen09g008240' => 'spe', 'Sopen09g025210' => 'spe', 'Sopen11g026600' => 'spe', 'Sopen11g030170' => 'spe', 'Sp1g10420' => 'spa', 'Sp3g06570' => 'spa', 'Sp4g10660' => 'spa', 'Sp5g16460' => 'spa', 'Sp6g22710' => 'spa', 'TAR365G0112' => 'tar', 'TAR369G0717' => 'tar', 'TAR374G0976' => 'tar', 'TAR623G1128' => 'tar', 'TAR626G1937' => 'tar', 'TAR627G0123' => 'tar', 'TAR628G0305' => 'tar', 'TAR636G1176' => 'tar', 'TAR636G2442' => 'tar', 'THA.LOC104800556' => 'tha', 'THA.LOC104809501' => 'tha', 'THA.LOC104815126' => 'tha', 'THA.LOC104815732' => 'tha', 'THA.LOC104823528' => 'tha', 'Thecc.02G365600' => 'tca', 'Thecc.06G222300' => 'tca', 'Thecc.09G261800' => 'tca', 'Thecc.09G291400' => 'tca', 'Thhalv10003028m.g' => 'esa', 'Thhalv10007886m.g' => 'esa', 'Thhalv10016085m.g' => 'esa', 'Thhalv10016681m.g' => 'esa', 'Thhalv10020951m.g' => 'esa', 'TPR.G15598' => 'tpr', 'TPR.G29305' => 'tpr', 'TPR.G32395' => 'tpr', 'TPR.G36998' => 'tpr', 'TPR.G4227' => 'tpr', 'TWI18G1433' => 'twi', 'TWI31G0755' => 'twi', 'TWI38G0912' => 'twi', 'TWI75G1097' => 'twi', 'TWI75G1619' => 'twi', 'TWI79G1336' => 'twi', 'unitig_0.g943' => 'ugi', 'unitig_0.g944' => 'ugi', 'unitig_22.g6646' => 'ugi', 'unitig_37.g12681' => 'ugi', 'unitig_8.g3290' => 'ugi', 'vmacro03278' => 'vma', 'vmacro12197' => 'vma', 'vmacro14478' => 'vma', 'vmacro15787' => 'vma', 'vmacro15789' => 'vma', 'vmacro15790' => 'vma', 'vmacro15806' => 'vma', 'vmacro22907' => 'vma', 'vmacro22908' => 'vma', 'vmacro22909' => 'vma', 'vmacro23108' => 'vma', 'VMungo0540G0540' => 'vmu', 'VMungo0540G2468' => 'vmu', 'VMungo1080G0390' => 'vmu', 'VMungo1080G1165' => 'vmu', 'VMungo1127G0170' => 'vmu', 'VMungo1127G2099' => 'vmu', 'VMungo1215G3013' => 'vmu', 'Zm00001eb013110' => 'zma', 'Zm00001eb084260' => 'zma', 'Zm00001eb096110' => 'zma', 'Zm00001eb217510' => 'zma', 'Zm00001eb322550' => 'zma', 'Zm00001eb390770' => 'zma', 'Zm00001eb397170' => 'zma', 'Zm00001eb404610' => 'zma', 'Zm00001eb421790' => 'zma' ), 'gf_id' => 'HOM05D000911', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000911' ), 'data_identifier' => 'HOM05D000911', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000911', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27780' => 'bna', 'A03p35380' => 'bna', 'A04p21160' => 'bna', 'A05p40570' => 'bna', 'A06p26900' => 'bna', 'A08p33230' => 'bna', 'A09p65960' => 'bna', 'A10p18290' => 'bna', 'Aa31LG1G12990' => 'aar', 'Aa31LG1G2980' => 'aar', 'Aa31LG4G14320' => 'aar', 'Aa31LG7G11800' => 'aar', 'Aa31sc36G50' => 'aar', 'Aa31sc36G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3721' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5459' => 'aag', 'Actinidia03028' => 'ach', 'Actinidia03753' => 'ach', 'Actinidia04187' => 'ach', 'Actinidia05509' => 'ach', 'Actinidia24180' => 'ach', 'Actinidia26906' => 'ach', 'Actinidia37097' => 'ach', 'Actinidia38249' => 'ach', 'Ah.01g003470' => 'amhyb', 'Ah.01g004580' => 'amhyb', 'Ah.01g014850' => 'amhyb', 'Ah.01g016830' => 'amhyb', 'Ah.14g088000' => 'amhyb', 'AL1G22980' => 'aly', 'AL3G18990' => 'aly', 'AL4G22440' => 'aly', 'AL4G33180' => 'aly', 'AL5G22920' => 'aly', 'AL6G33660' => 'aly', 'AL8G20720' => 'aly', 'Aqoxy1G00935' => 'aox', 'Aqoxy1G02094' => 'aox', 'Aqoxy2G01239' => 'aox', 'Aqoxy4G01870' => 'aox', 'Aqoxy7G00450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.36ZVTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71EM27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5D6C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH3WRE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3NCM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RIM768' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YB5YRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z36GDV' => 'arhy', 'AT1G08250' => 'ath', 'AT1G11790' => 'ath', 'AT2G27820' => 'ath', 'AT3G07630' => 'ath', 'AT3G44720' => 'ath', 'AT5G22630' => 'ath', 'ATR0693G304' => 'atr', 'ATR0794G109' => 'atr', 'ATR0820G120' => 'atr', 'ATR1159G064' => 'atr', 'Atru.chr10.2239' => 'acertr', 'Atru.chr3.3371' => 'acertr', 'Atru.chr6.3202' => 'acertr', 'AUR62006499' => 'cqu', 'AUR62012718' => 'cqu', 'AUR62021938' => 'cqu', 'AUR62023932' => 'cqu', 'AUR62025034' => 'cqu', 'AUR62025035' => 'cqu', 'AUR62038307' => 'cqu', 'AUR62043466' => 'cqu', 'BcaB02g10748' => 'bca', 'BcaB03g13231' => 'bca', 'BcaB03g14689' => 'bca', 'BcaB05g22716' => 'bca', 'BcaB06g28172' => 'bca', 'BcaB08g36413' => 'bca', 'BcaC01g02186' => 'bca', 'BcaC01g04272' => 'bca', 'BcaC02g08080' => 'bca', 'BcaC02g08227' => 'bca', 'BcaC03g13901' => 'bca', 'BcaC04g19593' => 'bca', 'BcaC04g20874' => 'bca', 'BcaC05g29557' => 'bca', 'BcaC06g35505' => 'bca', 'BcaC07g41954' => 'bca', 'BcaC07g41955' => 'bca', 'BcaC07g41956' => 'bca', 'BcaC07g42519' => 'bca', 'BcaC07g42520' => 'bca', 'BcaC07g42523' => 'bca', 'BcaC07g42524' => 'bca', 'BcaC07g42525' => 'bca', 'BcaC08g47480' => 'bca', 'BcaC08g47481' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00530' => 'bna', 'BolC2t07178H' => 'bol', 'BolC3t16567H' => 'bol', 'BolC4t27234H' => 'bol', 'BolC5t29728H' => 'bol', 'BolC5t34622H' => 'bol', 'BolC6t40321H' => 'bol', 'BolC7t42028H' => 'bol', 'BolC8t49125H' => 'bol', 'BolC8t52538H' => 'bol', 'BolC8t52539H' => 'bol', 'BolC9t56681H' => 'bol', 'BolC9t58266H' => 'bol', 'BolSC21t60294H' => 'bol', 'BraA02t05670Z' => 'bra', 'BraA03t12716Z' => 'bra', 'BraA04t17685Z' => 'bra', 'BraA05t22788Z' => 'bra', 'BraA06t24032Z' => 'bra', 'BraA06t25625Z' => 'bra', 'BraA07t27930Z' => 'bra', 'BraA08t35242Z' => 'bra', 'BraA09t38609Z' => 'bra', 'BraA10t43905Z' => 'bra', 'C02p11060' => 'bna', 'C03p42990' => 'bna', 'C03p67310' => 'bna', 'C04p56990' => 'bna', 'C04p58660' => 'bna', 'C05p09890' => 'bna', 'C05p59680' => 'bna', 'C06p19830' => 'bna', 'C06p53040' => 'bna', 'C07p15230' => 'bna', 'C08p50070' => 'bna', 'C08p50090' => 'bna', 'C09p38330' => 'bna', 'C09p53940' => 'bna', 'CAN.G1014.1' => 'can', 'CAN.G644.30' => 'can', 'CAN.G84.47' => 'can', 'CAN.G919.8' => 'can', 'CANSAT54G0113' => 'cansat', 'CANSAT54G1286' => 'cansat', 'CANSAT64G1020' => 'cansat', 'CARHR008080' => 'chi', 'CARHR008090' => 'chi', 'CARHR012130' => 'chi', 'CARHR038390' => 'chi', 'CARHR082330' => 'chi', 'CARHR120520' => 'chi', 'CARHR151470' => 'chi', 'CARHR190950' => 'chi', 'Carub.0001s0760' => 'cru', 'Carub.0001s1146' => 'cru', 'Carub.0003s0721' => 'cru', 'Carub.0004s0858' => 'cru', 'Carub.0005s1040' => 'cru', 'Carub.0006s2035' => 'cru', 'Carub.0015s0005' => 'cru', 'Ca_01607_v3' => 'car', 'Ca_01677_v3' => 'car', 'Ca_06087_v3' => 'car', 'Ca_19238_v3' => 'car', 'Ca_19373_v3' => 'car', 'Ca_21079_v3' => 'car', 'CBR_g54016' => 'cbr', 'CBR_g54018' => 'cbr', 'CBR_g54020' => 'cbr', 'Cc01_g09780' => 'ccan', 'Cc01_g11680' => 'ccan', 'Cc02_g15610' => 'ccan', 'Cc05_g04350' => 'ccan', 'Cc09_g01580' => 'ccan', 'CDE01G0795' => 'cde', 'CDE02G2024' => 'cde', 'CDE02G2260' => 'cde', 'CDE02G4561' => 'cde', 'CDE05G2733' => 'cde', 'CDE05G3422' => 'cde', 'CDE06G2003' => 'cde', 'CDE08G0576' => 'cde', 'CDE09G0048' => 'cde', 'CDE11G0805' => 'cde', 'Cfa003644' => 'cfa', 'Cfa006290' => 'cfa', 'Cfa010080' => 'cfa', 'Cfa011376' => 'cfa', 'Cfa011576' => 'cfa', 'Cfa011577' => 'cfa', 'Cfa014389' => 'cfa', 'Ciclev10006044m.g' => 'ccl', 'Ciclev10006954m.g' => 'ccl', 'Ciclev10015131m.g' => 'ccl', 'Ciclev10015580m.g' => 'ccl', 'Ciclev10028359m.g' => 'ccl', 'Ciclev10028573m.g' => 'ccl', 'CiPaw.03G159300' => 'cil', 'CiPaw.04G115100' => 'cil', 'CiPaw.09G092800' => 'cil', 'CiPaw.10G071800' => 'cil', 'CiPaw.13G105800' => 'cil', 'CiPaw.13G141000' => 'cil', 'CiPaw.14G103400' => 'cil', 'ClCG01G012700' => 'cla', 'ClCG01G012720' => 'cla', 'ClCG01G021920' => 'cla', 'ClCG02G008870' => 'cla', 'ClCG02G020840' => 'cla', 'ClCG02G021930' => 'cla', 'COL.COLO4_19302' => 'col', 'COL.COLO4_25262' => 'col', 'COL.COLO4_31788' => 'col', 'Cpa.g.c34684' => 'cpa', 'Cpa.g.c36520.1' => 'cpa', 'Cpa.g.c45626' => 'cpa', 'Cpa.g.sc121.17' => 'cpa', 'Cpa.g.sc13.22' => 'cpa', 'Cpa.g.sc87.88' => 'cpa', 'Cre06.g261800' => 'cre', 'CsaV3_1G014500' => 'csa', 'CsaV3_1G014510' => 'csa', 'CsaV3_2G034880' => 'csa', 'CsaV3_6G014760' => 'csa', 'CsaV3_6G021500' => 'csa', 'CsaV3_6G048980' => 'csa', 'CSS0002511' => 'camsi', 'CSS0007556' => 'camsi', 'CSS0008532' => 'camsi', 'CSS0009709' => 'camsi', 'CSS0010486' => 'camsi', 'CSS0016768' => 'camsi', 'CSS0023512' => 'camsi', 'CSS0025341' => 'camsi', 'CSS0027999' => 'camsi', 'CSS0028944' => 'camsi', 'CSS0032292' => 'camsi', 'CSS0032464' => 'camsi', 'CSS0037153' => 'camsi', 'CSS0039256' => 'camsi', 'CSS0048392' => 'camsi', 'CSS0050458' => 'camsi', 'DCAR_004224' => 'dca', 'DCAR_006147' => 'dca', 'DCAR_006465' => 'dca', 'DCAR_008159' => 'dca', 'DCAR_012164' => 'dca', 'DCAR_019764' => 'dca', 'Dinv05418' => 'din', 'Dinv10839' => 'din', 'Dinv12521' => 'din', 'Dinv13900' => 'din', 'Dinv29426' => 'din', 'Duzib150G0263' => 'dzi', 'Duzib168G1178' => 'dzi', 'Duzib168G1924' => 'dzi', 'Duzib170G0299' => 'dzi', 'Duzib170G0813' => 'dzi', 'Duzib235G1128' => 'dzi', 'Duzib248G1060' => 'dzi', 'ECA232G1910' => 'eca', 'ECA233G4621' => 'eca', 'ECA238G1216' => 'eca', 'ECA238G1784' => 'eca', 'ECA248G1242' => 'eca', 'EL10Ac8g20071' => 'bvu', 'EL10Ac9g21086' => 'bvu', 'EL10Ac9g22407' => 'bvu', 'EL10Ac9g22412' => 'bvu', 'Eucgr.A01119' => 'egr', 'Eucgr.E04043' => 'egr', 'Eucgr.J00428' => 'egr', 'Eucgr.J00958' => 'egr', 'FAN11G3091' => 'fan', 'FAN11G3651' => 'fan', 'FAN16G2566' => 'fan', 'FAN21G3155' => 'fan', 'FAN21G3400' => 'fan', 'FAN21G3543' => 'fan', 'FAN25G0234' => 'fan', 'FAN25G1422' => 'fan', 'FAN25G3392' => 'fan', 'FvH4_3g01940' => 'fve', 'FvH4_3g29870' => 'fve', 'FvH4_3g33680' => 'fve', 'Glyma.09G004200' => 'gma', 'Glyma.11G151288' => 'gma', 'Glyma.11G189100' => 'gma', 'Glyma.12G072500' => 'gma', 'Glyma.12G085500' => 'gma', 'Glyma.12G181800' => 'gma', 'Glyma.12G193000' => 'gma', 'Glyma.13G309300' => 'gma', 'Glyma.13G319000' => 'gma', 'Glyma.17G012600' => 'gma', 'Gohir.A06G148600' => 'ghi', 'Gohir.A07G115800' => 'ghi', 'Gohir.A08G003600' => 'ghi', 'Gohir.A09G093300' => 'ghi', 'Gohir.A09G105400' => 'ghi', 'Gohir.A09G105500' => 'ghi', 'Gohir.D06G154600' => 'ghi', 'Gohir.D07G120200' => 'ghi', 'Gohir.D08G013900' => 'ghi', 'Gohir.D09G093100' => 'ghi', 'Gohir.D09G102200' => 'ghi', 'Gohir.D09G102300' => 'ghi', 'Gorai.001G129400' => 'gra', 'Gorai.004G008200' => 'gra', 'Gorai.006G109800' => 'gra', 'Gorai.006G119500' => 'gra', 'Gorai.006G121300' => 'gra', 'Gorai.010G180700' => 'gra', 'GSVIVG01012716001' => 'vvi', 'GSVIVG01025118001' => 'vvi', 'GSVIVG01030439001' => 'vvi', 'GSVIVG01031397001' => 'vvi', 'HanXRQChr01g0004201' => 'han', 'HanXRQChr02g0054941' => 'han', 'HanXRQChr05g0141811' => 'han', 'HanXRQChr07g0197751' => 'han', 'HanXRQChr11g0346691' => 'han', 'HanXRQChr13g0396971' => 'han', 'HanXRQChr14g0432951' => 'han', 'HanXRQChr14g0452001' => 'han', 'HanXRQChr15g0496681' => 'han', 'HanXRQChr17g0557491' => 'han', 'HanXRQChr17g0557501' => 'han', 'Haze_06809' => 'cav', 'Haze_12852' => 'cav', 'Haze_15850' => 'cav', 'Haze_23446' => 'cav', 'Haze_23942' => 'cav', 'Haze_23943' => 'cav', 'Hma1.2p1_0091F.1_g046450' => 'hma', 'Hma1.2p1_0128F.1_g059910' => 'hma', 'Hma1.2p1_0249F.1_g102260' => 'hma', 'Hma1.2p1_0453F.1_g156190' => 'hma', 'Hma1.2p1_0695F.1_g204380' => 'hma', 'Hma1.2p1_0749F.1_g212650' => 'hma', 'Hma1.2p1_2156F.1_g315420' => 'hma', 'Hma1.2p1_2686F.1_g326940' => 'hma', 'HPP92_006428' => 'vpl', 'HPP92_012069' => 'vpl', 'HPP92_014129' => 'vpl', 'HPP92_014133' => 'vpl', 'HPP92_017315' => 'vpl', 'HPP92_026445' => 'vpl', 'HPP92_026446' => 'vpl', 'Hund00774' => 'sun', 'Hund07682' => 'sun', 'Hund21413' => 'sun', 'Hund23462' => 'sun', 'Hund23463' => 'sun', 'Lalb_Chr03g0027911' => 'lal', 'Lalb_Chr13g0304271' => 'lal', 'Lalb_Chr19g0137471' => 'lal', 'Lalb_Chr22g0350651' => 'lal', 'Lalb_Chr24g0395151' => 'lal', 'Lj1A1231T40' => 'lonja', 'Lj1A221T48' => 'lonja', 'Lj1C924T12' => 'lonja', 'Lj2C993G6' => 'lonja', 'Lj3g0005790' => 'lja', 'Lj3g0015432' => 'lja', 'Lj3g0017722' => 'lja', 'Lj3g0018497' => 'lja', 'Lj4g0025071' => 'lja', 'Lsat_1_v5_gn_1_129680' => 'lsa', 'Lsat_1_v5_gn_2_25321' => 'lsa', 'Lsat_1_v5_gn_2_95461' => 'lsa', 'Lsat_1_v5_gn_4_159620' => 'lsa', 'Lsat_1_v5_gn_6_41301' => 'lsa', 'Lsat_1_v5_gn_6_74660' => 'lsa', 'Lsat_1_v5_gn_7_11520' => 'lsa', 'Lsat_1_v5_gn_9_67680' => 'lsa', 'Manes.04G008300' => 'mes', 'Manes.04G008400' => 'mes', 'Manes.04G026500' => 'mes', 'Manes.10G135300' => 'mes', 'Manes.11G157300' => 'mes', 'Manes.12G074000' => 'mes', 'Manes.16G006200' => 'mes', 'Manes.17G026400' => 'mes', 'Mapoly0024s0086' => 'mpo', 'Mapoly0024s0087' => 'mpo', 'Mapoly0071s0057' => 'mpo', 'Mapoly0204s0012' => 'mpo', 'MBI04_g37681_MAGBIO' => 'mbi', 'MBI05_g17779_MAGBIO' => 'mbi', 'MBI12_g31184_MAGBIO' => 'mbi', 'MBI17_g11083_MAGBIO' => 'mbi', 'MBI18_g03883_MAGBIO' => 'mbi', 'MBI18_g28940_MAGBIO' => 'mbi', 'MCO01G690' => 'mco', 'MD03G1109900' => 'mdo', 'MD03G1134800' => 'mdo', 'MD05G1348000' => 'mdo', 'MD10G1322400' => 'mdo', 'MD11G1123300' => 'mdo', 'MD11G1157600' => 'mdo', 'Medtr2g084875' => 'mtr', 'Medtr2g088130' => 'mtr', 'Medtr4g055310' => 'mtr', 'Medtr4g061070' => 'mtr', 'Medtr4g132250' => 'mtr', 'MELO3C004795.2' => 'cme', 'MELO3C004797.2' => 'cme', 'MELO3C007396.2' => 'cme', 'MELO3C019277.2' => 'cme', 'MELO3C021449.2' => 'cme', 'MELO3C025736.2' => 'cme', 'Migut.D02175' => 'egut', 'Migut.H01573' => 'egut', 'Migut.M01327' => 'egut', 'Migut.N02513' => 'egut', 'MSTRG.14638' => 'ama', 'MSTRG.18632' => 'ama', 'MSTRG.7203' => 'ama', 'Nitab4.5_0000533g0140' => 'nta', 'Nitab4.5_0000888g0150' => 'nta', 'Nitab4.5_0001453g0040' => 'nta', 'Nitab4.5_0002827g0090' => 'nta', 'Nitab4.5_0003082g0040' => 'nta', 'Nitab4.5_0007799g0040' => 'nta', 'Nitab4.5_0008983g0010' => 'nta', 'Nitab4.5_0009017g0020' => 'nta', 'Nn1g02132' => 'nnu', 'Nn1g03492' => 'nnu', 'Nn1g03493' => 'nnu', 'Nn1g03494' => 'nnu', 'Nn1g07164' => 'nnu', 'Nn1g07291' => 'nnu', 'Nn2g10655' => 'nnu', 'Nn2g11652' => 'nnu', 'Nn2g14008' => 'nnu', 'Nn3g17476' => 'nnu', 'Nn3g17477' => 'nnu', 'Nn4g22370' => 'nnu', 'Nn4g25255' => 'nnu', 'Nn5g27755' => 'nnu', 'Nn6g34260' => 'nnu', 'Nn6g35041' => 'nnu', 'Oeu005924.1' => 'oeu', 'Oeu008383.1' => 'oeu', 'Oeu014928.1' => 'oeu', 'Oeu019889.1' => 'oeu', 'Oeu022271.1' => 'oeu', 'Oeu025271.1' => 'oeu', 'Oeu036302.1' => 'oeu', 'Oeu044100.1' => 'oeu', 'Os01g0528300' => 'osa', 'Os03g0286200' => 'osa', 'Os04g0406600' => 'osa', 'Os07g0512000' => 'osa', 'Os07g0694600' => 'osa', 'Os08g0411000' => 'osa', 'Os09g0565700' => 'osa', 'Os09g0566050' => 'osa', 'Os10g0523700' => 'osa', 'Peaxi162Scf00002g00514' => 'pax', 'Peaxi162Scf00047g01817' => 'pax', 'Peaxi162Scf00114g00001' => 'pax', 'Peaxi162Scf00147g00613' => 'pax', 'Peaxi162Scf00389g00425' => 'pax', 'PGR042G1139' => 'pgr', 'PGR042G3273' => 'pgr', 'PGR102G2180' => 'pgr', 'PGR119G0234' => 'pgr', 'PGR119G0668' => 'pgr', 'PGSC0003DMG400007122' => 'stu', 'PGSC0003DMG400016478' => 'stu', 'PGSC0003DMG400025374' => 'stu', 'PGSC0003DMG400026536' => 'stu', 'Phvul.003G079600' => 'pvu', 'Phvul.005G115600' => 'pvu', 'Phvul.005G127100' => 'pvu', 'Phvul.006G149500' => 'pvu', 'Phvul.006G149600' => 'pvu', 'Phvul.011G071800' => 'pvu', 'Phvul.011G090400' => 'pvu', 'Potri.004G013400' => 'ptr', 'Potri.004G188100' => 'ptr', 'Potri.008G195500' => 'ptr', 'Potri.009G148800' => 'ptr', 'Potri.011G004700' => 'ptr', 'Pp3c17_22810' => 'ppa', 'Pp3c18_4480' => 'ppa', 'Pp3c19_13030' => 'ppa', 'Pp3c1_33620' => 'ppa', 'Pp3c2_9380' => 'ppa', 'PRCOL_00001023' => 'pco', 'Prupe.3G216300' => 'ppe', 'Prupe.4G019500' => 'ppe', 'Prupe.6G092500' => 'ppe', 'Prupe.6G119200' => 'ppe', 'Psat0s1945g0080' => 'psa', 'Psat0s4167g0040' => 'psa', 'Psat1g185800' => 'psa', 'Psat4g006440' => 'psa', 'Psat4g006480' => 'psa', 'Psat4g168120' => 'psa', 'Psat5g255680' => 'psa', 'Psat5g261760' => 'psa', 'Psat7g222120' => 'psa', 'PSO063G7252' => 'pso', 'PSO170G4778' => 'pso', 'PSO210G2249' => 'pso', 'PSO339G2411' => 'pso', 'PSO339G2457' => 'pso', 'PSO339G2854' => 'pso', 'PSO339G4288' => 'pso', 'PSO339G4615' => 'pso', 'PSO384G2796' => 'pso', 'PSO384G2940' => 'pso', 'PSO384G4227' => 'pso', 'PSO478G1425' => 'pso', 'PSO541G3863' => 'pso', 'PSO675G0507' => 'pso', 'PSO782G0338' => 'pso', 'PSO832G0644' => 'pso', 'QL01p013664' => 'qlo', 'QL01p036598' => 'qlo', 'QL05p072984' => 'qlo', 'QL08p005768' => 'qlo', 'QL08p032743' => 'qlo', 'QL93p0073_0439' => 'qlo', 'QL93p0073_0444' => 'qlo', 'RcHm_v2.0_Chr5g0002851' => 'rch', 'RcHm_v2.0_Chr5g0055201' => 'rch', 'RcHm_v2.0_Chr5g0061191' => 'rch', 'RcHm_v2.0_Chr7g0203231' => 'rch', 'Rhsim01G0208100' => 'rsi', 'Rhsim01G0208200' => 'rsi', 'Rhsim02G0106500' => 'rsi', 'Rhsim03G0107900' => 'rsi', 'Rhsim06G0163400' => 'rsi', 'Rhsim13G0105200' => 'rsi', 'Sabra04G0006300' => 'sbr', 'Sabra04G0127000' => 'sbr', 'Sabra08G0148700' => 'sbr', 'Sabra09G0117400' => 'sbr', 'SalBow1G3326' => 'sbo', 'SalBow3G3228' => 'sbo', 'SalBow6G1634' => 'sbo', 'SalBow6G3603' => 'sbo', 'SalBow6G5266' => 'sbo', 'SalBow7G2265' => 'sbo', 'SalBow8G0850' => 'sbo', 'SalBow8G2592' => 'sbo', 'Sc05g0009240' => 'sci', 'Sc12g0002300' => 'sci', 'Sc21g0000100' => 'sci', 'Sc21g0004720' => 'sci', 'Sed0002949' => 'sed', 'Sed0004114' => 'sed', 'Sed0004306' => 'sed', 'Sed0006172' => 'sed', 'Sed0008413' => 'sed', 'Sed0013809' => 'sed', 'Sed0019556' => 'sed', 'SEGI_03570' => 'sgi', 'SEGI_07859' => 'sgi', 'SEGI_15042' => 'sgi', 'SEGI_16263' => 'sgi', 'SEGI_16552' => 'sgi', 'SEGI_24331' => 'sgi', 'SEGI_27316' => 'sgi', 'SEGI_29521' => 'sgi', 'SEGI_41342' => 'sgi', 'SGA_v2.0_scaffold27G11617' => 'sas', 'SGA_v2.0_scaffold316G48428' => 'sas', 'SGA_v2.0_scaffold49G18261' => 'sas', 'SGA_v2.0_scaffold7G03831' => 'sas', 'SGA_v2.0_scaffold93G28359' => 'sas', 'SHI02210' => 'shi', 'SHI06028' => 'shi', 'SHI06321' => 'shi', 'SMO111G0012' => 'smo', 'SMO228G0080' => 'smo', 'SMO356G0756' => 'smo', 'Solyc02g080620.3' => 'sly', 'Solyc06g074530.1' => 'sly', 'Solyc11g066890.1' => 'sly', 'Solyc11g072520.3' => 'sly', 'Sopen02g025330' => 'spe', 'Sopen06g031000' => 'spe', 'Sopen09g008240' => 'spe', 'Sopen09g025210' => 'spe', 'Sopen11g026600' => 'spe', 'Sopen11g030170' => 'spe', 'Sp1g10420' => 'spa', 'Sp3g06570' => 'spa', 'Sp4g10660' => 'spa', 'Sp5g16460' => 'spa', 'Sp6g22710' => 'spa', 'TAR365G0112' => 'tar', 'TAR369G0717' => 'tar', 'TAR374G0976' => 'tar', 'TAR623G1128' => 'tar', 'TAR626G1937' => 'tar', 'TAR627G0123' => 'tar', 'TAR628G0305' => 'tar', 'TAR636G1176' => 'tar', 'TAR636G2442' => 'tar', 'THA.LOC104800556' => 'tha', 'THA.LOC104809501' => 'tha', 'THA.LOC104815126' => 'tha', 'THA.LOC104815732' => 'tha', 'THA.LOC104823528' => 'tha', 'Thecc.02G365600' => 'tca', 'Thecc.06G222300' => 'tca', 'Thecc.09G261800' => 'tca', 'Thecc.09G291400' => 'tca', 'Thhalv10003028m.g' => 'esa', 'Thhalv10007886m.g' => 'esa', 'Thhalv10016085m.g' => 'esa', 'Thhalv10016681m.g' => 'esa', 'Thhalv10020951m.g' => 'esa', 'TPR.G15598' => 'tpr', 'TPR.G29305' => 'tpr', 'TPR.G32395' => 'tpr', 'TPR.G36998' => 'tpr', 'TPR.G4227' => 'tpr', 'TWI18G1433' => 'twi', 'TWI31G0755' => 'twi', 'TWI38G0912' => 'twi', 'TWI75G1097' => 'twi', 'TWI75G1619' => 'twi', 'TWI79G1336' => 'twi', 'unitig_0.g943' => 'ugi', 'unitig_0.g944' => 'ugi', 'unitig_22.g6646' => 'ugi', 'unitig_37.g12681' => 'ugi', 'unitig_8.g3290' => 'ugi', 'vmacro03278' => 'vma', 'vmacro12197' => 'vma', 'vmacro14478' => 'vma', 'vmacro15787' => 'vma', 'vmacro15789' => 'vma', 'vmacro15790' => 'vma', 'vmacro15806' => 'vma', 'vmacro22907' => 'vma', 'vmacro22908' => 'vma', 'vmacro22909' => 'vma', 'vmacro23108' => 'vma', 'VMungo0540G0540' => 'vmu', 'VMungo0540G2468' => 'vmu', 'VMungo1080G0390' => 'vmu', 'VMungo1080G1165' => 'vmu', 'VMungo1127G0170' => 'vmu', 'VMungo1127G2099' => 'vmu', 'VMungo1215G3013' => 'vmu', 'Zm00001eb013110' => 'zma', 'Zm00001eb084260' => 'zma', 'Zm00001eb096110' => 'zma', 'Zm00001eb217510' => 'zma', 'Zm00001eb322550' => 'zma', 'Zm00001eb390770' => 'zma', 'Zm00001eb397170' => 'zma', 'Zm00001eb404610' => 'zma', 'Zm00001eb421790' => 'zma' ) $gf_id = 'HOM05D000911' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000911' ) $data_identifier = 'HOM05D000911' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 16, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 5, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 6, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 8, 'nnu' => (int) 16, 'oeu' => (int) 8, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 5, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 16, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421790' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000911', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27780' => 'bna', 'A03p35380' => 'bna', 'A04p21160' => 'bna', 'A05p40570' => 'bna', 'A06p26900' => 'bna', 'A08p33230' => 'bna', 'A09p65960' => 'bna', 'A10p18290' => 'bna', 'Aa31LG1G12990' => 'aar', 'Aa31LG1G2980' => 'aar', 'Aa31LG4G14320' => 'aar', 'Aa31LG7G11800' => 'aar', 'Aa31sc36G50' => 'aar', 'Aa31sc36G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3721' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5459' => 'aag', 'Actinidia03028' => 'ach', 'Actinidia03753' => 'ach', 'Actinidia04187' => 'ach', 'Actinidia05509' => 'ach', 'Actinidia24180' => 'ach', 'Actinidia26906' => 'ach', 'Actinidia37097' => 'ach', 'Actinidia38249' => 'ach', 'Ah.01g003470' => 'amhyb', 'Ah.01g004580' => 'amhyb', 'Ah.01g014850' => 'amhyb', 'Ah.01g016830' => 'amhyb', 'Ah.14g088000' => 'amhyb', 'AL1G22980' => 'aly', 'AL3G18990' => 'aly', 'AL4G22440' => 'aly', 'AL4G33180' => 'aly', 'AL5G22920' => 'aly', 'AL6G33660' => 'aly', 'AL8G20720' => 'aly', 'Aqoxy1G00935' => 'aox', 'Aqoxy1G02094' => 'aox', 'Aqoxy2G01239' => 'aox', 'Aqoxy4G01870' => 'aox', 'Aqoxy7G00450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.36ZVTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71EM27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5D6C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH3WRE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3NCM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RIM768' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YB5YRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z36GDV' => 'arhy', 'AT1G08250' => 'ath', 'AT1G11790' => 'ath', 'AT2G27820' => 'ath', 'AT3G07630' => 'ath', 'AT3G44720' => 'ath', 'AT5G22630' => 'ath', 'ATR0693G304' => 'atr', 'ATR0794G109' => 'atr', 'ATR0820G120' => 'atr', 'ATR1159G064' => 'atr', 'Atru.chr10.2239' => 'acertr', 'Atru.chr3.3371' => 'acertr', 'Atru.chr6.3202' => 'acertr', 'AUR62006499' => 'cqu', 'AUR62012718' => 'cqu', 'AUR62021938' => 'cqu', 'AUR62023932' => 'cqu', 'AUR62025034' => 'cqu', 'AUR62025035' => 'cqu', 'AUR62038307' => 'cqu', 'AUR62043466' => 'cqu', 'BcaB02g10748' => 'bca', 'BcaB03g13231' => 'bca', 'BcaB03g14689' => 'bca', 'BcaB05g22716' => 'bca', 'BcaB06g28172' => 'bca', 'BcaB08g36413' => 'bca', 'BcaC01g02186' => 'bca', 'BcaC01g04272' => 'bca', 'BcaC02g08080' => 'bca', 'BcaC02g08227' => 'bca', 'BcaC03g13901' => 'bca', 'BcaC04g19593' => 'bca', 'BcaC04g20874' => 'bca', 'BcaC05g29557' => 'bca', 'BcaC06g35505' => 'bca', 'BcaC07g41954' => 'bca', 'BcaC07g41955' => 'bca', 'BcaC07g41956' => 'bca', 'BcaC07g42519' => 'bca', 'BcaC07g42520' => 'bca', 'BcaC07g42523' => 'bca', 'BcaC07g42524' => 'bca', 'BcaC07g42525' => 'bca', 'BcaC08g47480' => 'bca', 'BcaC08g47481' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00530' => 'bna', 'BolC2t07178H' => 'bol', 'BolC3t16567H' => 'bol', 'BolC4t27234H' => 'bol', 'BolC5t29728H' => 'bol', 'BolC5t34622H' => 'bol', 'BolC6t40321H' => 'bol', 'BolC7t42028H' => 'bol', 'BolC8t49125H' => 'bol', 'BolC8t52538H' => 'bol', 'BolC8t52539H' => 'bol', 'BolC9t56681H' => 'bol', 'BolC9t58266H' => 'bol', 'BolSC21t60294H' => 'bol', 'BraA02t05670Z' => 'bra', 'BraA03t12716Z' => 'bra', 'BraA04t17685Z' => 'bra', 'BraA05t22788Z' => 'bra', 'BraA06t24032Z' => 'bra', 'BraA06t25625Z' => 'bra', 'BraA07t27930Z' => 'bra', 'BraA08t35242Z' => 'bra', 'BraA09t38609Z' => 'bra', 'BraA10t43905Z' => 'bra', 'C02p11060' => 'bna', 'C03p42990' => 'bna', 'C03p67310' => 'bna', 'C04p56990' => 'bna', 'C04p58660' => 'bna', 'C05p09890' => 'bna', 'C05p59680' => 'bna', 'C06p19830' => 'bna', 'C06p53040' => 'bna', 'C07p15230' => 'bna', 'C08p50070' => 'bna', 'C08p50090' => 'bna', 'C09p38330' => 'bna', 'C09p53940' => 'bna', 'CAN.G1014.1' => 'can', 'CAN.G644.30' => 'can', 'CAN.G84.47' => 'can', 'CAN.G919.8' => 'can', 'CANSAT54G0113' => 'cansat', 'CANSAT54G1286' => 'cansat', 'CANSAT64G1020' => 'cansat', 'CARHR008080' => 'chi', 'CARHR008090' => 'chi', 'CARHR012130' => 'chi', 'CARHR038390' => 'chi', 'CARHR082330' => 'chi', 'CARHR120520' => 'chi', 'CARHR151470' => 'chi', 'CARHR190950' => 'chi', 'Carub.0001s0760' => 'cru', 'Carub.0001s1146' => 'cru', 'Carub.0003s0721' => 'cru', 'Carub.0004s0858' => 'cru', 'Carub.0005s1040' => 'cru', 'Carub.0006s2035' => 'cru', 'Carub.0015s0005' => 'cru', 'Ca_01607_v3' => 'car', 'Ca_01677_v3' => 'car', 'Ca_06087_v3' => 'car', 'Ca_19238_v3' => 'car', 'Ca_19373_v3' => 'car', 'Ca_21079_v3' => 'car', 'CBR_g54016' => 'cbr', 'CBR_g54018' => 'cbr', 'CBR_g54020' => 'cbr', 'Cc01_g09780' => 'ccan', 'Cc01_g11680' => 'ccan', 'Cc02_g15610' => 'ccan', 'Cc05_g04350' => 'ccan', 'Cc09_g01580' => 'ccan', 'CDE01G0795' => 'cde', 'CDE02G2024' => 'cde', 'CDE02G2260' => 'cde', 'CDE02G4561' => 'cde', 'CDE05G2733' => 'cde', 'CDE05G3422' => 'cde', 'CDE06G2003' => 'cde', 'CDE08G0576' => 'cde', 'CDE09G0048' => 'cde', 'CDE11G0805' => 'cde', 'Cfa003644' => 'cfa', 'Cfa006290' => 'cfa', 'Cfa010080' => 'cfa', 'Cfa011376' => 'cfa', 'Cfa011576' => 'cfa', 'Cfa011577' => 'cfa', 'Cfa014389' => 'cfa', 'Ciclev10006044m.g' => 'ccl', 'Ciclev10006954m.g' => 'ccl', 'Ciclev10015131m.g' => 'ccl', 'Ciclev10015580m.g' => 'ccl', 'Ciclev10028359m.g' => 'ccl', 'Ciclev10028573m.g' => 'ccl', 'CiPaw.03G159300' => 'cil', 'CiPaw.04G115100' => 'cil', 'CiPaw.09G092800' => 'cil', 'CiPaw.10G071800' => 'cil', 'CiPaw.13G105800' => 'cil', 'CiPaw.13G141000' => 'cil', 'CiPaw.14G103400' => 'cil', 'ClCG01G012700' => 'cla', 'ClCG01G012720' => 'cla', 'ClCG01G021920' => 'cla', 'ClCG02G008870' => 'cla', 'ClCG02G020840' => 'cla', 'ClCG02G021930' => 'cla', 'COL.COLO4_19302' => 'col', 'COL.COLO4_25262' => 'col', 'COL.COLO4_31788' => 'col', 'Cpa.g.c34684' => 'cpa', 'Cpa.g.c36520.1' => 'cpa', 'Cpa.g.c45626' => 'cpa', 'Cpa.g.sc121.17' => 'cpa', 'Cpa.g.sc13.22' => 'cpa', 'Cpa.g.sc87.88' => 'cpa', 'Cre06.g261800' => 'cre', 'CsaV3_1G014500' => 'csa', 'CsaV3_1G014510' => 'csa', 'CsaV3_2G034880' => 'csa', 'CsaV3_6G014760' => 'csa', 'CsaV3_6G021500' => 'csa', 'CsaV3_6G048980' => 'csa', 'CSS0002511' => 'camsi', 'CSS0007556' => 'camsi', 'CSS0008532' => 'camsi', 'CSS0009709' => 'camsi', 'CSS0010486' => 'camsi', 'CSS0016768' => 'camsi', 'CSS0023512' => 'camsi', 'CSS0025341' => 'camsi', 'CSS0027999' => 'camsi', 'CSS0028944' => 'camsi', 'CSS0032292' => 'camsi', 'CSS0032464' => 'camsi', 'CSS0037153' => 'camsi', 'CSS0039256' => 'camsi', 'CSS0048392' => 'camsi', 'CSS0050458' => 'camsi', 'DCAR_004224' => 'dca', 'DCAR_006147' => 'dca', 'DCAR_006465' => 'dca', 'DCAR_008159' => 'dca', 'DCAR_012164' => 'dca', 'DCAR_019764' => 'dca', 'Dinv05418' => 'din', 'Dinv10839' => 'din', 'Dinv12521' => 'din', 'Dinv13900' => 'din', 'Dinv29426' => 'din', 'Duzib150G0263' => 'dzi', 'Duzib168G1178' => 'dzi', 'Duzib168G1924' => 'dzi', 'Duzib170G0299' => 'dzi', 'Duzib170G0813' => 'dzi', 'Duzib235G1128' => 'dzi', 'Duzib248G1060' => 'dzi', 'ECA232G1910' => 'eca', 'ECA233G4621' => 'eca', 'ECA238G1216' => 'eca', 'ECA238G1784' => 'eca', 'ECA248G1242' => 'eca', 'EL10Ac8g20071' => 'bvu', 'EL10Ac9g21086' => 'bvu', 'EL10Ac9g22407' => 'bvu', 'EL10Ac9g22412' => 'bvu', 'Eucgr.A01119' => 'egr', 'Eucgr.E04043' => 'egr', 'Eucgr.J00428' => 'egr', 'Eucgr.J00958' => 'egr', 'FAN11G3091' => 'fan', 'FAN11G3651' => 'fan', 'FAN16G2566' => 'fan', 'FAN21G3155' => 'fan', 'FAN21G3400' => 'fan', 'FAN21G3543' => 'fan', 'FAN25G0234' => 'fan', 'FAN25G1422' => 'fan', 'FAN25G3392' => 'fan', 'FvH4_3g01940' => 'fve', 'FvH4_3g29870' => 'fve', 'FvH4_3g33680' => 'fve', 'Glyma.09G004200' => 'gma', 'Glyma.11G151288' => 'gma', 'Glyma.11G189100' => 'gma', 'Glyma.12G072500' => 'gma', 'Glyma.12G085500' => 'gma', 'Glyma.12G181800' => 'gma', 'Glyma.12G193000' => 'gma', 'Glyma.13G309300' => 'gma', 'Glyma.13G319000' => 'gma', 'Glyma.17G012600' => 'gma', 'Gohir.A06G148600' => 'ghi', 'Gohir.A07G115800' => 'ghi', 'Gohir.A08G003600' => 'ghi', 'Gohir.A09G093300' => 'ghi', 'Gohir.A09G105400' => 'ghi', 'Gohir.A09G105500' => 'ghi', 'Gohir.D06G154600' => 'ghi', 'Gohir.D07G120200' => 'ghi', 'Gohir.D08G013900' => 'ghi', 'Gohir.D09G093100' => 'ghi', 'Gohir.D09G102200' => 'ghi', 'Gohir.D09G102300' => 'ghi', 'Gorai.001G129400' => 'gra', 'Gorai.004G008200' => 'gra', 'Gorai.006G109800' => 'gra', 'Gorai.006G119500' => 'gra', 'Gorai.006G121300' => 'gra', 'Gorai.010G180700' => 'gra', 'GSVIVG01012716001' => 'vvi', 'GSVIVG01025118001' => 'vvi', 'GSVIVG01030439001' => 'vvi', 'GSVIVG01031397001' => 'vvi', 'HanXRQChr01g0004201' => 'han', 'HanXRQChr02g0054941' => 'han', 'HanXRQChr05g0141811' => 'han', 'HanXRQChr07g0197751' => 'han', 'HanXRQChr11g0346691' => 'han', 'HanXRQChr13g0396971' => 'han', 'HanXRQChr14g0432951' => 'han', 'HanXRQChr14g0452001' => 'han', 'HanXRQChr15g0496681' => 'han', 'HanXRQChr17g0557491' => 'han', 'HanXRQChr17g0557501' => 'han', 'Haze_06809' => 'cav', 'Haze_12852' => 'cav', 'Haze_15850' => 'cav', 'Haze_23446' => 'cav', 'Haze_23942' => 'cav', 'Haze_23943' => 'cav', 'Hma1.2p1_0091F.1_g046450' => 'hma', 'Hma1.2p1_0128F.1_g059910' => 'hma', 'Hma1.2p1_0249F.1_g102260' => 'hma', 'Hma1.2p1_0453F.1_g156190' => 'hma', 'Hma1.2p1_0695F.1_g204380' => 'hma', 'Hma1.2p1_0749F.1_g212650' => 'hma', 'Hma1.2p1_2156F.1_g315420' => 'hma', 'Hma1.2p1_2686F.1_g326940' => 'hma', 'HPP92_006428' => 'vpl', 'HPP92_012069' => 'vpl', 'HPP92_014129' => 'vpl', 'HPP92_014133' => 'vpl', 'HPP92_017315' => 'vpl', 'HPP92_026445' => 'vpl', 'HPP92_026446' => 'vpl', 'Hund00774' => 'sun', 'Hund07682' => 'sun', 'Hund21413' => 'sun', 'Hund23462' => 'sun', 'Hund23463' => 'sun', 'Lalb_Chr03g0027911' => 'lal', 'Lalb_Chr13g0304271' => 'lal', 'Lalb_Chr19g0137471' => 'lal', 'Lalb_Chr22g0350651' => 'lal', 'Lalb_Chr24g0395151' => 'lal', 'Lj1A1231T40' => 'lonja', 'Lj1A221T48' => 'lonja', 'Lj1C924T12' => 'lonja', 'Lj2C993G6' => 'lonja', 'Lj3g0005790' => 'lja', 'Lj3g0015432' => 'lja', 'Lj3g0017722' => 'lja', 'Lj3g0018497' => 'lja', 'Lj4g0025071' => 'lja', 'Lsat_1_v5_gn_1_129680' => 'lsa', 'Lsat_1_v5_gn_2_25321' => 'lsa', 'Lsat_1_v5_gn_2_95461' => 'lsa', 'Lsat_1_v5_gn_4_159620' => 'lsa', 'Lsat_1_v5_gn_6_41301' => 'lsa', 'Lsat_1_v5_gn_6_74660' => 'lsa', 'Lsat_1_v5_gn_7_11520' => 'lsa', 'Lsat_1_v5_gn_9_67680' => 'lsa', 'Manes.04G008300' => 'mes', 'Manes.04G008400' => 'mes', 'Manes.04G026500' => 'mes', 'Manes.10G135300' => 'mes', 'Manes.11G157300' => 'mes', 'Manes.12G074000' => 'mes', 'Manes.16G006200' => 'mes', 'Manes.17G026400' => 'mes', 'Mapoly0024s0086' => 'mpo', 'Mapoly0024s0087' => 'mpo', 'Mapoly0071s0057' => 'mpo', 'Mapoly0204s0012' => 'mpo', 'MBI04_g37681_MAGBIO' => 'mbi', 'MBI05_g17779_MAGBIO' => 'mbi', 'MBI12_g31184_MAGBIO' => 'mbi', 'MBI17_g11083_MAGBIO' => 'mbi', 'MBI18_g03883_MAGBIO' => 'mbi', 'MBI18_g28940_MAGBIO' => 'mbi', 'MCO01G690' => 'mco', 'MD03G1109900' => 'mdo', 'MD03G1134800' => 'mdo', 'MD05G1348000' => 'mdo', 'MD10G1322400' => 'mdo', 'MD11G1123300' => 'mdo', 'MD11G1157600' => 'mdo', 'Medtr2g084875' => 'mtr', 'Medtr2g088130' => 'mtr', 'Medtr4g055310' => 'mtr', 'Medtr4g061070' => 'mtr', 'Medtr4g132250' => 'mtr', 'MELO3C004795.2' => 'cme', 'MELO3C004797.2' => 'cme', 'MELO3C007396.2' => 'cme', 'MELO3C019277.2' => 'cme', 'MELO3C021449.2' => 'cme', 'MELO3C025736.2' => 'cme', 'Migut.D02175' => 'egut', 'Migut.H01573' => 'egut', 'Migut.M01327' => 'egut', 'Migut.N02513' => 'egut', 'MSTRG.14638' => 'ama', 'MSTRG.18632' => 'ama', 'MSTRG.7203' => 'ama', 'Nitab4.5_0000533g0140' => 'nta', 'Nitab4.5_0000888g0150' => 'nta', 'Nitab4.5_0001453g0040' => 'nta', 'Nitab4.5_0002827g0090' => 'nta', 'Nitab4.5_0003082g0040' => 'nta', 'Nitab4.5_0007799g0040' => 'nta', 'Nitab4.5_0008983g0010' => 'nta', 'Nitab4.5_0009017g0020' => 'nta', 'Nn1g02132' => 'nnu', 'Nn1g03492' => 'nnu', 'Nn1g03493' => 'nnu', 'Nn1g03494' => 'nnu', 'Nn1g07164' => 'nnu', 'Nn1g07291' => 'nnu', 'Nn2g10655' => 'nnu', 'Nn2g11652' => 'nnu', 'Nn2g14008' => 'nnu', 'Nn3g17476' => 'nnu', 'Nn3g17477' => 'nnu', 'Nn4g22370' => 'nnu', 'Nn4g25255' => 'nnu', 'Nn5g27755' => 'nnu', 'Nn6g34260' => 'nnu', 'Nn6g35041' => 'nnu', 'Oeu005924.1' => 'oeu', 'Oeu008383.1' => 'oeu', 'Oeu014928.1' => 'oeu', 'Oeu019889.1' => 'oeu', 'Oeu022271.1' => 'oeu', 'Oeu025271.1' => 'oeu', 'Oeu036302.1' => 'oeu', 'Oeu044100.1' => 'oeu', 'Os01g0528300' => 'osa', 'Os03g0286200' => 'osa', 'Os04g0406600' => 'osa', 'Os07g0512000' => 'osa', 'Os07g0694600' => 'osa', 'Os08g0411000' => 'osa', 'Os09g0565700' => 'osa', 'Os09g0566050' => 'osa', 'Os10g0523700' => 'osa', 'Peaxi162Scf00002g00514' => 'pax', 'Peaxi162Scf00047g01817' => 'pax', 'Peaxi162Scf00114g00001' => 'pax', 'Peaxi162Scf00147g00613' => 'pax', 'Peaxi162Scf00389g00425' => 'pax', 'PGR042G1139' => 'pgr', 'PGR042G3273' => 'pgr', 'PGR102G2180' => 'pgr', 'PGR119G0234' => 'pgr', 'PGR119G0668' => 'pgr', 'PGSC0003DMG400007122' => 'stu', 'PGSC0003DMG400016478' => 'stu', 'PGSC0003DMG400025374' => 'stu', 'PGSC0003DMG400026536' => 'stu', 'Phvul.003G079600' => 'pvu', 'Phvul.005G115600' => 'pvu', 'Phvul.005G127100' => 'pvu', 'Phvul.006G149500' => 'pvu', 'Phvul.006G149600' => 'pvu', 'Phvul.011G071800' => 'pvu', 'Phvul.011G090400' => 'pvu', 'Potri.004G013400' => 'ptr', 'Potri.004G188100' => 'ptr', 'Potri.008G195500' => 'ptr', 'Potri.009G148800' => 'ptr', 'Potri.011G004700' => 'ptr', 'Pp3c17_22810' => 'ppa', 'Pp3c18_4480' => 'ppa', 'Pp3c19_13030' => 'ppa', 'Pp3c1_33620' => 'ppa', 'Pp3c2_9380' => 'ppa', 'PRCOL_00001023' => 'pco', 'Prupe.3G216300' => 'ppe', 'Prupe.4G019500' => 'ppe', 'Prupe.6G092500' => 'ppe', 'Prupe.6G119200' => 'ppe', 'Psat0s1945g0080' => 'psa', 'Psat0s4167g0040' => 'psa', 'Psat1g185800' => 'psa', 'Psat4g006440' => 'psa', 'Psat4g006480' => 'psa', 'Psat4g168120' => 'psa', 'Psat5g255680' => 'psa', 'Psat5g261760' => 'psa', 'Psat7g222120' => 'psa', 'PSO063G7252' => 'pso', 'PSO170G4778' => 'pso', 'PSO210G2249' => 'pso', 'PSO339G2411' => 'pso', 'PSO339G2457' => 'pso', 'PSO339G2854' => 'pso', 'PSO339G4288' => 'pso', 'PSO339G4615' => 'pso', 'PSO384G2796' => 'pso', 'PSO384G2940' => 'pso', 'PSO384G4227' => 'pso', 'PSO478G1425' => 'pso', 'PSO541G3863' => 'pso', 'PSO675G0507' => 'pso', 'PSO782G0338' => 'pso', 'PSO832G0644' => 'pso', 'QL01p013664' => 'qlo', 'QL01p036598' => 'qlo', 'QL05p072984' => 'qlo', 'QL08p005768' => 'qlo', 'QL08p032743' => 'qlo', 'QL93p0073_0439' => 'qlo', 'QL93p0073_0444' => 'qlo', 'RcHm_v2.0_Chr5g0002851' => 'rch', 'RcHm_v2.0_Chr5g0055201' => 'rch', 'RcHm_v2.0_Chr5g0061191' => 'rch', 'RcHm_v2.0_Chr7g0203231' => 'rch', 'Rhsim01G0208100' => 'rsi', 'Rhsim01G0208200' => 'rsi', 'Rhsim02G0106500' => 'rsi', 'Rhsim03G0107900' => 'rsi', 'Rhsim06G0163400' => 'rsi', 'Rhsim13G0105200' => 'rsi', 'Sabra04G0006300' => 'sbr', 'Sabra04G0127000' => 'sbr', 'Sabra08G0148700' => 'sbr', 'Sabra09G0117400' => 'sbr', 'SalBow1G3326' => 'sbo', 'SalBow3G3228' => 'sbo', 'SalBow6G1634' => 'sbo', 'SalBow6G3603' => 'sbo', 'SalBow6G5266' => 'sbo', 'SalBow7G2265' => 'sbo', 'SalBow8G0850' => 'sbo', 'SalBow8G2592' => 'sbo', 'Sc05g0009240' => 'sci', 'Sc12g0002300' => 'sci', 'Sc21g0000100' => 'sci', 'Sc21g0004720' => 'sci', 'Sed0002949' => 'sed', 'Sed0004114' => 'sed', 'Sed0004306' => 'sed', 'Sed0006172' => 'sed', 'Sed0008413' => 'sed', 'Sed0013809' => 'sed', 'Sed0019556' => 'sed', 'SEGI_03570' => 'sgi', 'SEGI_07859' => 'sgi', 'SEGI_15042' => 'sgi', 'SEGI_16263' => 'sgi', 'SEGI_16552' => 'sgi', 'SEGI_24331' => 'sgi', 'SEGI_27316' => 'sgi', 'SEGI_29521' => 'sgi', 'SEGI_41342' => 'sgi', 'SGA_v2.0_scaffold27G11617' => 'sas', 'SGA_v2.0_scaffold316G48428' => 'sas', 'SGA_v2.0_scaffold49G18261' => 'sas', 'SGA_v2.0_scaffold7G03831' => 'sas', 'SGA_v2.0_scaffold93G28359' => 'sas', 'SHI02210' => 'shi', 'SHI06028' => 'shi', 'SHI06321' => 'shi', 'SMO111G0012' => 'smo', 'SMO228G0080' => 'smo', 'SMO356G0756' => 'smo', 'Solyc02g080620.3' => 'sly', 'Solyc06g074530.1' => 'sly', 'Solyc11g066890.1' => 'sly', 'Solyc11g072520.3' => 'sly', 'Sopen02g025330' => 'spe', 'Sopen06g031000' => 'spe', 'Sopen09g008240' => 'spe', 'Sopen09g025210' => 'spe', 'Sopen11g026600' => 'spe', 'Sopen11g030170' => 'spe', 'Sp1g10420' => 'spa', 'Sp3g06570' => 'spa', 'Sp4g10660' => 'spa', 'Sp5g16460' => 'spa', 'Sp6g22710' => 'spa', 'TAR365G0112' => 'tar', 'TAR369G0717' => 'tar', 'TAR374G0976' => 'tar', 'TAR623G1128' => 'tar', 'TAR626G1937' => 'tar', 'TAR627G0123' => 'tar', 'TAR628G0305' => 'tar', 'TAR636G1176' => 'tar', 'TAR636G2442' => 'tar', 'THA.LOC104800556' => 'tha', 'THA.LOC104809501' => 'tha', 'THA.LOC104815126' => 'tha', 'THA.LOC104815732' => 'tha', 'THA.LOC104823528' => 'tha', 'Thecc.02G365600' => 'tca', 'Thecc.06G222300' => 'tca', 'Thecc.09G261800' => 'tca', 'Thecc.09G291400' => 'tca', 'Thhalv10003028m.g' => 'esa', 'Thhalv10007886m.g' => 'esa', 'Thhalv10016085m.g' => 'esa', 'Thhalv10016681m.g' => 'esa', 'Thhalv10020951m.g' => 'esa', 'TPR.G15598' => 'tpr', 'TPR.G29305' => 'tpr', 'TPR.G32395' => 'tpr', 'TPR.G36998' => 'tpr', 'TPR.G4227' => 'tpr', 'TWI18G1433' => 'twi', 'TWI31G0755' => 'twi', 'TWI38G0912' => 'twi', 'TWI75G1097' => 'twi', 'TWI75G1619' => 'twi', 'TWI79G1336' => 'twi', 'unitig_0.g943' => 'ugi', 'unitig_0.g944' => 'ugi', 'unitig_22.g6646' => 'ugi', 'unitig_37.g12681' => 'ugi', 'unitig_8.g3290' => 'ugi', 'vmacro03278' => 'vma', 'vmacro12197' => 'vma', 'vmacro14478' => 'vma', 'vmacro15787' => 'vma', 'vmacro15789' => 'vma', 'vmacro15790' => 'vma', 'vmacro15806' => 'vma', 'vmacro22907' => 'vma', 'vmacro22908' => 'vma', 'vmacro22909' => 'vma', 'vmacro23108' => 'vma', 'VMungo0540G0540' => 'vmu', 'VMungo0540G2468' => 'vmu', 'VMungo1080G0390' => 'vmu', 'VMungo1080G1165' => 'vmu', 'VMungo1127G0170' => 'vmu', 'VMungo1127G2099' => 'vmu', 'VMungo1215G3013' => 'vmu', 'Zm00001eb013110' => 'zma', 'Zm00001eb084260' => 'zma', 'Zm00001eb096110' => 'zma', 'Zm00001eb217510' => 'zma', 'Zm00001eb322550' => 'zma', 'Zm00001eb390770' => 'zma', 'Zm00001eb397170' => 'zma', 'Zm00001eb404610' => 'zma', 'Zm00001eb421790' => 'zma' ), 'gf_id' => 'HOM05D000911', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000911' ), 'data_identifier' => 'HOM05D000911', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000911', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27780' => 'bna', 'A03p35380' => 'bna', 'A04p21160' => 'bna', 'A05p40570' => 'bna', 'A06p26900' => 'bna', 'A08p33230' => 'bna', 'A09p65960' => 'bna', 'A10p18290' => 'bna', 'Aa31LG1G12990' => 'aar', 'Aa31LG1G2980' => 'aar', 'Aa31LG4G14320' => 'aar', 'Aa31LG7G11800' => 'aar', 'Aa31sc36G50' => 'aar', 'Aa31sc36G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3721' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5459' => 'aag', 'Actinidia03028' => 'ach', 'Actinidia03753' => 'ach', 'Actinidia04187' => 'ach', 'Actinidia05509' => 'ach', 'Actinidia24180' => 'ach', 'Actinidia26906' => 'ach', 'Actinidia37097' => 'ach', 'Actinidia38249' => 'ach', 'Ah.01g003470' => 'amhyb', 'Ah.01g004580' => 'amhyb', 'Ah.01g014850' => 'amhyb', 'Ah.01g016830' => 'amhyb', 'Ah.14g088000' => 'amhyb', 'AL1G22980' => 'aly', 'AL3G18990' => 'aly', 'AL4G22440' => 'aly', 'AL4G33180' => 'aly', 'AL5G22920' => 'aly', 'AL6G33660' => 'aly', 'AL8G20720' => 'aly', 'Aqoxy1G00935' => 'aox', 'Aqoxy1G02094' => 'aox', 'Aqoxy2G01239' => 'aox', 'Aqoxy4G01870' => 'aox', 'Aqoxy7G00450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.36ZVTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71EM27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5D6C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH3WRE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3NCM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RIM768' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YB5YRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z36GDV' => 'arhy', 'AT1G08250' => 'ath', 'AT1G11790' => 'ath', 'AT2G27820' => 'ath', 'AT3G07630' => 'ath', 'AT3G44720' => 'ath', 'AT5G22630' => 'ath', 'ATR0693G304' => 'atr', 'ATR0794G109' => 'atr', 'ATR0820G120' => 'atr', 'ATR1159G064' => 'atr', 'Atru.chr10.2239' => 'acertr', 'Atru.chr3.3371' => 'acertr', 'Atru.chr6.3202' => 'acertr', 'AUR62006499' => 'cqu', 'AUR62012718' => 'cqu', 'AUR62021938' => 'cqu', 'AUR62023932' => 'cqu', 'AUR62025034' => 'cqu', 'AUR62025035' => 'cqu', 'AUR62038307' => 'cqu', 'AUR62043466' => 'cqu', 'BcaB02g10748' => 'bca', 'BcaB03g13231' => 'bca', 'BcaB03g14689' => 'bca', 'BcaB05g22716' => 'bca', 'BcaB06g28172' => 'bca', 'BcaB08g36413' => 'bca', 'BcaC01g02186' => 'bca', 'BcaC01g04272' => 'bca', 'BcaC02g08080' => 'bca', 'BcaC02g08227' => 'bca', 'BcaC03g13901' => 'bca', 'BcaC04g19593' => 'bca', 'BcaC04g20874' => 'bca', 'BcaC05g29557' => 'bca', 'BcaC06g35505' => 'bca', 'BcaC07g41954' => 'bca', 'BcaC07g41955' => 'bca', 'BcaC07g41956' => 'bca', 'BcaC07g42519' => 'bca', 'BcaC07g42520' => 'bca', 'BcaC07g42523' => 'bca', 'BcaC07g42524' => 'bca', 'BcaC07g42525' => 'bca', 'BcaC08g47480' => 'bca', 'BcaC08g47481' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00530' => 'bna', 'BolC2t07178H' => 'bol', 'BolC3t16567H' => 'bol', 'BolC4t27234H' => 'bol', 'BolC5t29728H' => 'bol', 'BolC5t34622H' => 'bol', 'BolC6t40321H' => 'bol', 'BolC7t42028H' => 'bol', 'BolC8t49125H' => 'bol', 'BolC8t52538H' => 'bol', 'BolC8t52539H' => 'bol', 'BolC9t56681H' => 'bol', 'BolC9t58266H' => 'bol', 'BolSC21t60294H' => 'bol', 'BraA02t05670Z' => 'bra', 'BraA03t12716Z' => 'bra', 'BraA04t17685Z' => 'bra', 'BraA05t22788Z' => 'bra', 'BraA06t24032Z' => 'bra', 'BraA06t25625Z' => 'bra', 'BraA07t27930Z' => 'bra', 'BraA08t35242Z' => 'bra', 'BraA09t38609Z' => 'bra', 'BraA10t43905Z' => 'bra', 'C02p11060' => 'bna', 'C03p42990' => 'bna', 'C03p67310' => 'bna', 'C04p56990' => 'bna', 'C04p58660' => 'bna', 'C05p09890' => 'bna', 'C05p59680' => 'bna', 'C06p19830' => 'bna', 'C06p53040' => 'bna', 'C07p15230' => 'bna', 'C08p50070' => 'bna', 'C08p50090' => 'bna', 'C09p38330' => 'bna', 'C09p53940' => 'bna', 'CAN.G1014.1' => 'can', 'CAN.G644.30' => 'can', 'CAN.G84.47' => 'can', 'CAN.G919.8' => 'can', 'CANSAT54G0113' => 'cansat', 'CANSAT54G1286' => 'cansat', 'CANSAT64G1020' => 'cansat', 'CARHR008080' => 'chi', 'CARHR008090' => 'chi', 'CARHR012130' => 'chi', 'CARHR038390' => 'chi', 'CARHR082330' => 'chi', 'CARHR120520' => 'chi', 'CARHR151470' => 'chi', 'CARHR190950' => 'chi', 'Carub.0001s0760' => 'cru', 'Carub.0001s1146' => 'cru', 'Carub.0003s0721' => 'cru', 'Carub.0004s0858' => 'cru', 'Carub.0005s1040' => 'cru', 'Carub.0006s2035' => 'cru', 'Carub.0015s0005' => 'cru', 'Ca_01607_v3' => 'car', 'Ca_01677_v3' => 'car', 'Ca_06087_v3' => 'car', 'Ca_19238_v3' => 'car', 'Ca_19373_v3' => 'car', 'Ca_21079_v3' => 'car', 'CBR_g54016' => 'cbr', 'CBR_g54018' => 'cbr', 'CBR_g54020' => 'cbr', 'Cc01_g09780' => 'ccan', 'Cc01_g11680' => 'ccan', 'Cc02_g15610' => 'ccan', 'Cc05_g04350' => 'ccan', 'Cc09_g01580' => 'ccan', 'CDE01G0795' => 'cde', 'CDE02G2024' => 'cde', 'CDE02G2260' => 'cde', 'CDE02G4561' => 'cde', 'CDE05G2733' => 'cde', 'CDE05G3422' => 'cde', 'CDE06G2003' => 'cde', 'CDE08G0576' => 'cde', 'CDE09G0048' => 'cde', 'CDE11G0805' => 'cde', 'Cfa003644' => 'cfa', 'Cfa006290' => 'cfa', 'Cfa010080' => 'cfa', 'Cfa011376' => 'cfa', 'Cfa011576' => 'cfa', 'Cfa011577' => 'cfa', 'Cfa014389' => 'cfa', 'Ciclev10006044m.g' => 'ccl', 'Ciclev10006954m.g' => 'ccl', 'Ciclev10015131m.g' => 'ccl', 'Ciclev10015580m.g' => 'ccl', 'Ciclev10028359m.g' => 'ccl', 'Ciclev10028573m.g' => 'ccl', 'CiPaw.03G159300' => 'cil', 'CiPaw.04G115100' => 'cil', 'CiPaw.09G092800' => 'cil', 'CiPaw.10G071800' => 'cil', 'CiPaw.13G105800' => 'cil', 'CiPaw.13G141000' => 'cil', 'CiPaw.14G103400' => 'cil', 'ClCG01G012700' => 'cla', 'ClCG01G012720' => 'cla', 'ClCG01G021920' => 'cla', 'ClCG02G008870' => 'cla', 'ClCG02G020840' => 'cla', 'ClCG02G021930' => 'cla', 'COL.COLO4_19302' => 'col', 'COL.COLO4_25262' => 'col', 'COL.COLO4_31788' => 'col', 'Cpa.g.c34684' => 'cpa', 'Cpa.g.c36520.1' => 'cpa', 'Cpa.g.c45626' => 'cpa', 'Cpa.g.sc121.17' => 'cpa', 'Cpa.g.sc13.22' => 'cpa', 'Cpa.g.sc87.88' => 'cpa', 'Cre06.g261800' => 'cre', 'CsaV3_1G014500' => 'csa', 'CsaV3_1G014510' => 'csa', 'CsaV3_2G034880' => 'csa', 'CsaV3_6G014760' => 'csa', 'CsaV3_6G021500' => 'csa', 'CsaV3_6G048980' => 'csa', 'CSS0002511' => 'camsi', 'CSS0007556' => 'camsi', 'CSS0008532' => 'camsi', 'CSS0009709' => 'camsi', 'CSS0010486' => 'camsi', 'CSS0016768' => 'camsi', 'CSS0023512' => 'camsi', 'CSS0025341' => 'camsi', 'CSS0027999' => 'camsi', 'CSS0028944' => 'camsi', 'CSS0032292' => 'camsi', 'CSS0032464' => 'camsi', 'CSS0037153' => 'camsi', 'CSS0039256' => 'camsi', 'CSS0048392' => 'camsi', 'CSS0050458' => 'camsi', 'DCAR_004224' => 'dca', 'DCAR_006147' => 'dca', 'DCAR_006465' => 'dca', 'DCAR_008159' => 'dca', 'DCAR_012164' => 'dca', 'DCAR_019764' => 'dca', 'Dinv05418' => 'din', 'Dinv10839' => 'din', 'Dinv12521' => 'din', 'Dinv13900' => 'din', 'Dinv29426' => 'din', 'Duzib150G0263' => 'dzi', 'Duzib168G1178' => 'dzi', 'Duzib168G1924' => 'dzi', 'Duzib170G0299' => 'dzi', 'Duzib170G0813' => 'dzi', 'Duzib235G1128' => 'dzi', 'Duzib248G1060' => 'dzi', 'ECA232G1910' => 'eca', 'ECA233G4621' => 'eca', 'ECA238G1216' => 'eca', 'ECA238G1784' => 'eca', 'ECA248G1242' => 'eca', 'EL10Ac8g20071' => 'bvu', 'EL10Ac9g21086' => 'bvu', 'EL10Ac9g22407' => 'bvu', 'EL10Ac9g22412' => 'bvu', 'Eucgr.A01119' => 'egr', 'Eucgr.E04043' => 'egr', 'Eucgr.J00428' => 'egr', 'Eucgr.J00958' => 'egr', 'FAN11G3091' => 'fan', 'FAN11G3651' => 'fan', 'FAN16G2566' => 'fan', 'FAN21G3155' => 'fan', 'FAN21G3400' => 'fan', 'FAN21G3543' => 'fan', 'FAN25G0234' => 'fan', 'FAN25G1422' => 'fan', 'FAN25G3392' => 'fan', 'FvH4_3g01940' => 'fve', 'FvH4_3g29870' => 'fve', 'FvH4_3g33680' => 'fve', 'Glyma.09G004200' => 'gma', 'Glyma.11G151288' => 'gma', 'Glyma.11G189100' => 'gma', 'Glyma.12G072500' => 'gma', 'Glyma.12G085500' => 'gma', 'Glyma.12G181800' => 'gma', 'Glyma.12G193000' => 'gma', 'Glyma.13G309300' => 'gma', 'Glyma.13G319000' => 'gma', 'Glyma.17G012600' => 'gma', 'Gohir.A06G148600' => 'ghi', 'Gohir.A07G115800' => 'ghi', 'Gohir.A08G003600' => 'ghi', 'Gohir.A09G093300' => 'ghi', 'Gohir.A09G105400' => 'ghi', 'Gohir.A09G105500' => 'ghi', 'Gohir.D06G154600' => 'ghi', 'Gohir.D07G120200' => 'ghi', 'Gohir.D08G013900' => 'ghi', 'Gohir.D09G093100' => 'ghi', 'Gohir.D09G102200' => 'ghi', 'Gohir.D09G102300' => 'ghi', 'Gorai.001G129400' => 'gra', 'Gorai.004G008200' => 'gra', 'Gorai.006G109800' => 'gra', 'Gorai.006G119500' => 'gra', 'Gorai.006G121300' => 'gra', 'Gorai.010G180700' => 'gra', 'GSVIVG01012716001' => 'vvi', 'GSVIVG01025118001' => 'vvi', 'GSVIVG01030439001' => 'vvi', 'GSVIVG01031397001' => 'vvi', 'HanXRQChr01g0004201' => 'han', 'HanXRQChr02g0054941' => 'han', 'HanXRQChr05g0141811' => 'han', 'HanXRQChr07g0197751' => 'han', 'HanXRQChr11g0346691' => 'han', 'HanXRQChr13g0396971' => 'han', 'HanXRQChr14g0432951' => 'han', 'HanXRQChr14g0452001' => 'han', 'HanXRQChr15g0496681' => 'han', 'HanXRQChr17g0557491' => 'han', 'HanXRQChr17g0557501' => 'han', 'Haze_06809' => 'cav', 'Haze_12852' => 'cav', 'Haze_15850' => 'cav', 'Haze_23446' => 'cav', 'Haze_23942' => 'cav', 'Haze_23943' => 'cav', 'Hma1.2p1_0091F.1_g046450' => 'hma', 'Hma1.2p1_0128F.1_g059910' => 'hma', 'Hma1.2p1_0249F.1_g102260' => 'hma', 'Hma1.2p1_0453F.1_g156190' => 'hma', 'Hma1.2p1_0695F.1_g204380' => 'hma', 'Hma1.2p1_0749F.1_g212650' => 'hma', 'Hma1.2p1_2156F.1_g315420' => 'hma', 'Hma1.2p1_2686F.1_g326940' => 'hma', 'HPP92_006428' => 'vpl', 'HPP92_012069' => 'vpl', 'HPP92_014129' => 'vpl', 'HPP92_014133' => 'vpl', 'HPP92_017315' => 'vpl', 'HPP92_026445' => 'vpl', 'HPP92_026446' => 'vpl', 'Hund00774' => 'sun', 'Hund07682' => 'sun', 'Hund21413' => 'sun', 'Hund23462' => 'sun', 'Hund23463' => 'sun', 'Lalb_Chr03g0027911' => 'lal', 'Lalb_Chr13g0304271' => 'lal', 'Lalb_Chr19g0137471' => 'lal', 'Lalb_Chr22g0350651' => 'lal', 'Lalb_Chr24g0395151' => 'lal', 'Lj1A1231T40' => 'lonja', 'Lj1A221T48' => 'lonja', 'Lj1C924T12' => 'lonja', 'Lj2C993G6' => 'lonja', 'Lj3g0005790' => 'lja', 'Lj3g0015432' => 'lja', 'Lj3g0017722' => 'lja', 'Lj3g0018497' => 'lja', 'Lj4g0025071' => 'lja', 'Lsat_1_v5_gn_1_129680' => 'lsa', 'Lsat_1_v5_gn_2_25321' => 'lsa', 'Lsat_1_v5_gn_2_95461' => 'lsa', 'Lsat_1_v5_gn_4_159620' => 'lsa', 'Lsat_1_v5_gn_6_41301' => 'lsa', 'Lsat_1_v5_gn_6_74660' => 'lsa', 'Lsat_1_v5_gn_7_11520' => 'lsa', 'Lsat_1_v5_gn_9_67680' => 'lsa', 'Manes.04G008300' => 'mes', 'Manes.04G008400' => 'mes', 'Manes.04G026500' => 'mes', 'Manes.10G135300' => 'mes', 'Manes.11G157300' => 'mes', 'Manes.12G074000' => 'mes', 'Manes.16G006200' => 'mes', 'Manes.17G026400' => 'mes', 'Mapoly0024s0086' => 'mpo', 'Mapoly0024s0087' => 'mpo', 'Mapoly0071s0057' => 'mpo', 'Mapoly0204s0012' => 'mpo', 'MBI04_g37681_MAGBIO' => 'mbi', 'MBI05_g17779_MAGBIO' => 'mbi', 'MBI12_g31184_MAGBIO' => 'mbi', 'MBI17_g11083_MAGBIO' => 'mbi', 'MBI18_g03883_MAGBIO' => 'mbi', 'MBI18_g28940_MAGBIO' => 'mbi', 'MCO01G690' => 'mco', 'MD03G1109900' => 'mdo', 'MD03G1134800' => 'mdo', 'MD05G1348000' => 'mdo', 'MD10G1322400' => 'mdo', 'MD11G1123300' => 'mdo', 'MD11G1157600' => 'mdo', 'Medtr2g084875' => 'mtr', 'Medtr2g088130' => 'mtr', 'Medtr4g055310' => 'mtr', 'Medtr4g061070' => 'mtr', 'Medtr4g132250' => 'mtr', 'MELO3C004795.2' => 'cme', 'MELO3C004797.2' => 'cme', 'MELO3C007396.2' => 'cme', 'MELO3C019277.2' => 'cme', 'MELO3C021449.2' => 'cme', 'MELO3C025736.2' => 'cme', 'Migut.D02175' => 'egut', 'Migut.H01573' => 'egut', 'Migut.M01327' => 'egut', 'Migut.N02513' => 'egut', 'MSTRG.14638' => 'ama', 'MSTRG.18632' => 'ama', 'MSTRG.7203' => 'ama', 'Nitab4.5_0000533g0140' => 'nta', 'Nitab4.5_0000888g0150' => 'nta', 'Nitab4.5_0001453g0040' => 'nta', 'Nitab4.5_0002827g0090' => 'nta', 'Nitab4.5_0003082g0040' => 'nta', 'Nitab4.5_0007799g0040' => 'nta', 'Nitab4.5_0008983g0010' => 'nta', 'Nitab4.5_0009017g0020' => 'nta', 'Nn1g02132' => 'nnu', 'Nn1g03492' => 'nnu', 'Nn1g03493' => 'nnu', 'Nn1g03494' => 'nnu', 'Nn1g07164' => 'nnu', 'Nn1g07291' => 'nnu', 'Nn2g10655' => 'nnu', 'Nn2g11652' => 'nnu', 'Nn2g14008' => 'nnu', 'Nn3g17476' => 'nnu', 'Nn3g17477' => 'nnu', 'Nn4g22370' => 'nnu', 'Nn4g25255' => 'nnu', 'Nn5g27755' => 'nnu', 'Nn6g34260' => 'nnu', 'Nn6g35041' => 'nnu', 'Oeu005924.1' => 'oeu', 'Oeu008383.1' => 'oeu', 'Oeu014928.1' => 'oeu', 'Oeu019889.1' => 'oeu', 'Oeu022271.1' => 'oeu', 'Oeu025271.1' => 'oeu', 'Oeu036302.1' => 'oeu', 'Oeu044100.1' => 'oeu', 'Os01g0528300' => 'osa', 'Os03g0286200' => 'osa', 'Os04g0406600' => 'osa', 'Os07g0512000' => 'osa', 'Os07g0694600' => 'osa', 'Os08g0411000' => 'osa', 'Os09g0565700' => 'osa', 'Os09g0566050' => 'osa', 'Os10g0523700' => 'osa', 'Peaxi162Scf00002g00514' => 'pax', 'Peaxi162Scf00047g01817' => 'pax', 'Peaxi162Scf00114g00001' => 'pax', 'Peaxi162Scf00147g00613' => 'pax', 'Peaxi162Scf00389g00425' => 'pax', 'PGR042G1139' => 'pgr', 'PGR042G3273' => 'pgr', 'PGR102G2180' => 'pgr', 'PGR119G0234' => 'pgr', 'PGR119G0668' => 'pgr', 'PGSC0003DMG400007122' => 'stu', 'PGSC0003DMG400016478' => 'stu', 'PGSC0003DMG400025374' => 'stu', 'PGSC0003DMG400026536' => 'stu', 'Phvul.003G079600' => 'pvu', 'Phvul.005G115600' => 'pvu', 'Phvul.005G127100' => 'pvu', 'Phvul.006G149500' => 'pvu', 'Phvul.006G149600' => 'pvu', 'Phvul.011G071800' => 'pvu', 'Phvul.011G090400' => 'pvu', 'Potri.004G013400' => 'ptr', 'Potri.004G188100' => 'ptr', 'Potri.008G195500' => 'ptr', 'Potri.009G148800' => 'ptr', 'Potri.011G004700' => 'ptr', 'Pp3c17_22810' => 'ppa', 'Pp3c18_4480' => 'ppa', 'Pp3c19_13030' => 'ppa', 'Pp3c1_33620' => 'ppa', 'Pp3c2_9380' => 'ppa', 'PRCOL_00001023' => 'pco', 'Prupe.3G216300' => 'ppe', 'Prupe.4G019500' => 'ppe', 'Prupe.6G092500' => 'ppe', 'Prupe.6G119200' => 'ppe', 'Psat0s1945g0080' => 'psa', 'Psat0s4167g0040' => 'psa', 'Psat1g185800' => 'psa', 'Psat4g006440' => 'psa', 'Psat4g006480' => 'psa', 'Psat4g168120' => 'psa', 'Psat5g255680' => 'psa', 'Psat5g261760' => 'psa', 'Psat7g222120' => 'psa', 'PSO063G7252' => 'pso', 'PSO170G4778' => 'pso', 'PSO210G2249' => 'pso', 'PSO339G2411' => 'pso', 'PSO339G2457' => 'pso', 'PSO339G2854' => 'pso', 'PSO339G4288' => 'pso', 'PSO339G4615' => 'pso', 'PSO384G2796' => 'pso', 'PSO384G2940' => 'pso', 'PSO384G4227' => 'pso', 'PSO478G1425' => 'pso', 'PSO541G3863' => 'pso', 'PSO675G0507' => 'pso', 'PSO782G0338' => 'pso', 'PSO832G0644' => 'pso', 'QL01p013664' => 'qlo', 'QL01p036598' => 'qlo', 'QL05p072984' => 'qlo', 'QL08p005768' => 'qlo', 'QL08p032743' => 'qlo', 'QL93p0073_0439' => 'qlo', 'QL93p0073_0444' => 'qlo', 'RcHm_v2.0_Chr5g0002851' => 'rch', 'RcHm_v2.0_Chr5g0055201' => 'rch', 'RcHm_v2.0_Chr5g0061191' => 'rch', 'RcHm_v2.0_Chr7g0203231' => 'rch', 'Rhsim01G0208100' => 'rsi', 'Rhsim01G0208200' => 'rsi', 'Rhsim02G0106500' => 'rsi', 'Rhsim03G0107900' => 'rsi', 'Rhsim06G0163400' => 'rsi', 'Rhsim13G0105200' => 'rsi', 'Sabra04G0006300' => 'sbr', 'Sabra04G0127000' => 'sbr', 'Sabra08G0148700' => 'sbr', 'Sabra09G0117400' => 'sbr', 'SalBow1G3326' => 'sbo', 'SalBow3G3228' => 'sbo', 'SalBow6G1634' => 'sbo', 'SalBow6G3603' => 'sbo', 'SalBow6G5266' => 'sbo', 'SalBow7G2265' => 'sbo', 'SalBow8G0850' => 'sbo', 'SalBow8G2592' => 'sbo', 'Sc05g0009240' => 'sci', 'Sc12g0002300' => 'sci', 'Sc21g0000100' => 'sci', 'Sc21g0004720' => 'sci', 'Sed0002949' => 'sed', 'Sed0004114' => 'sed', 'Sed0004306' => 'sed', 'Sed0006172' => 'sed', 'Sed0008413' => 'sed', 'Sed0013809' => 'sed', 'Sed0019556' => 'sed', 'SEGI_03570' => 'sgi', 'SEGI_07859' => 'sgi', 'SEGI_15042' => 'sgi', 'SEGI_16263' => 'sgi', 'SEGI_16552' => 'sgi', 'SEGI_24331' => 'sgi', 'SEGI_27316' => 'sgi', 'SEGI_29521' => 'sgi', 'SEGI_41342' => 'sgi', 'SGA_v2.0_scaffold27G11617' => 'sas', 'SGA_v2.0_scaffold316G48428' => 'sas', 'SGA_v2.0_scaffold49G18261' => 'sas', 'SGA_v2.0_scaffold7G03831' => 'sas', 'SGA_v2.0_scaffold93G28359' => 'sas', 'SHI02210' => 'shi', 'SHI06028' => 'shi', 'SHI06321' => 'shi', 'SMO111G0012' => 'smo', 'SMO228G0080' => 'smo', 'SMO356G0756' => 'smo', 'Solyc02g080620.3' => 'sly', 'Solyc06g074530.1' => 'sly', 'Solyc11g066890.1' => 'sly', 'Solyc11g072520.3' => 'sly', 'Sopen02g025330' => 'spe', 'Sopen06g031000' => 'spe', 'Sopen09g008240' => 'spe', 'Sopen09g025210' => 'spe', 'Sopen11g026600' => 'spe', 'Sopen11g030170' => 'spe', 'Sp1g10420' => 'spa', 'Sp3g06570' => 'spa', 'Sp4g10660' => 'spa', 'Sp5g16460' => 'spa', 'Sp6g22710' => 'spa', 'TAR365G0112' => 'tar', 'TAR369G0717' => 'tar', 'TAR374G0976' => 'tar', 'TAR623G1128' => 'tar', 'TAR626G1937' => 'tar', 'TAR627G0123' => 'tar', 'TAR628G0305' => 'tar', 'TAR636G1176' => 'tar', 'TAR636G2442' => 'tar', 'THA.LOC104800556' => 'tha', 'THA.LOC104809501' => 'tha', 'THA.LOC104815126' => 'tha', 'THA.LOC104815732' => 'tha', 'THA.LOC104823528' => 'tha', 'Thecc.02G365600' => 'tca', 'Thecc.06G222300' => 'tca', 'Thecc.09G261800' => 'tca', 'Thecc.09G291400' => 'tca', 'Thhalv10003028m.g' => 'esa', 'Thhalv10007886m.g' => 'esa', 'Thhalv10016085m.g' => 'esa', 'Thhalv10016681m.g' => 'esa', 'Thhalv10020951m.g' => 'esa', 'TPR.G15598' => 'tpr', 'TPR.G29305' => 'tpr', 'TPR.G32395' => 'tpr', 'TPR.G36998' => 'tpr', 'TPR.G4227' => 'tpr', 'TWI18G1433' => 'twi', 'TWI31G0755' => 'twi', 'TWI38G0912' => 'twi', 'TWI75G1097' => 'twi', 'TWI75G1619' => 'twi', 'TWI79G1336' => 'twi', 'unitig_0.g943' => 'ugi', 'unitig_0.g944' => 'ugi', 'unitig_22.g6646' => 'ugi', 'unitig_37.g12681' => 'ugi', 'unitig_8.g3290' => 'ugi', 'vmacro03278' => 'vma', 'vmacro12197' => 'vma', 'vmacro14478' => 'vma', 'vmacro15787' => 'vma', 'vmacro15789' => 'vma', 'vmacro15790' => 'vma', 'vmacro15806' => 'vma', 'vmacro22907' => 'vma', 'vmacro22908' => 'vma', 'vmacro22909' => 'vma', 'vmacro23108' => 'vma', 'VMungo0540G0540' => 'vmu', 'VMungo0540G2468' => 'vmu', 'VMungo1080G0390' => 'vmu', 'VMungo1080G1165' => 'vmu', 'VMungo1127G0170' => 'vmu', 'VMungo1127G2099' => 'vmu', 'VMungo1215G3013' => 'vmu', 'Zm00001eb013110' => 'zma', 'Zm00001eb084260' => 'zma', 'Zm00001eb096110' => 'zma', 'Zm00001eb217510' => 'zma', 'Zm00001eb322550' => 'zma', 'Zm00001eb390770' => 'zma', 'Zm00001eb397170' => 'zma', 'Zm00001eb404610' => 'zma', 'Zm00001eb421790' => 'zma' ) $gf_id = 'HOM05D000911' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000911' ) $data_identifier = 'HOM05D000911' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 16, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 5, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 6, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 8, 'nnu' => (int) 16, 'oeu' => (int) 8, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 5, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 16, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421790' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000911', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27780' => 'bna', 'A03p35380' => 'bna', 'A04p21160' => 'bna', 'A05p40570' => 'bna', 'A06p26900' => 'bna', 'A08p33230' => 'bna', 'A09p65960' => 'bna', 'A10p18290' => 'bna', 'Aa31LG1G12990' => 'aar', 'Aa31LG1G2980' => 'aar', 'Aa31LG4G14320' => 'aar', 'Aa31LG7G11800' => 'aar', 'Aa31sc36G50' => 'aar', 'Aa31sc36G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3721' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5459' => 'aag', 'Actinidia03028' => 'ach', 'Actinidia03753' => 'ach', 'Actinidia04187' => 'ach', 'Actinidia05509' => 'ach', 'Actinidia24180' => 'ach', 'Actinidia26906' => 'ach', 'Actinidia37097' => 'ach', 'Actinidia38249' => 'ach', 'Ah.01g003470' => 'amhyb', 'Ah.01g004580' => 'amhyb', 'Ah.01g014850' => 'amhyb', 'Ah.01g016830' => 'amhyb', 'Ah.14g088000' => 'amhyb', 'AL1G22980' => 'aly', 'AL3G18990' => 'aly', 'AL4G22440' => 'aly', 'AL4G33180' => 'aly', 'AL5G22920' => 'aly', 'AL6G33660' => 'aly', 'AL8G20720' => 'aly', 'Aqoxy1G00935' => 'aox', 'Aqoxy1G02094' => 'aox', 'Aqoxy2G01239' => 'aox', 'Aqoxy4G01870' => 'aox', 'Aqoxy7G00450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.36ZVTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71EM27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5D6C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH3WRE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3NCM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RIM768' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YB5YRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z36GDV' => 'arhy', 'AT1G08250' => 'ath', 'AT1G11790' => 'ath', 'AT2G27820' => 'ath', 'AT3G07630' => 'ath', 'AT3G44720' => 'ath', 'AT5G22630' => 'ath', 'ATR0693G304' => 'atr', 'ATR0794G109' => 'atr', 'ATR0820G120' => 'atr', 'ATR1159G064' => 'atr', 'Atru.chr10.2239' => 'acertr', 'Atru.chr3.3371' => 'acertr', 'Atru.chr6.3202' => 'acertr', 'AUR62006499' => 'cqu', 'AUR62012718' => 'cqu', 'AUR62021938' => 'cqu', 'AUR62023932' => 'cqu', 'AUR62025034' => 'cqu', 'AUR62025035' => 'cqu', 'AUR62038307' => 'cqu', 'AUR62043466' => 'cqu', 'BcaB02g10748' => 'bca', 'BcaB03g13231' => 'bca', 'BcaB03g14689' => 'bca', 'BcaB05g22716' => 'bca', 'BcaB06g28172' => 'bca', 'BcaB08g36413' => 'bca', 'BcaC01g02186' => 'bca', 'BcaC01g04272' => 'bca', 'BcaC02g08080' => 'bca', 'BcaC02g08227' => 'bca', 'BcaC03g13901' => 'bca', 'BcaC04g19593' => 'bca', 'BcaC04g20874' => 'bca', 'BcaC05g29557' => 'bca', 'BcaC06g35505' => 'bca', 'BcaC07g41954' => 'bca', 'BcaC07g41955' => 'bca', 'BcaC07g41956' => 'bca', 'BcaC07g42519' => 'bca', 'BcaC07g42520' => 'bca', 'BcaC07g42523' => 'bca', 'BcaC07g42524' => 'bca', 'BcaC07g42525' => 'bca', 'BcaC08g47480' => 'bca', 'BcaC08g47481' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00530' => 'bna', 'BolC2t07178H' => 'bol', 'BolC3t16567H' => 'bol', 'BolC4t27234H' => 'bol', 'BolC5t29728H' => 'bol', 'BolC5t34622H' => 'bol', 'BolC6t40321H' => 'bol', 'BolC7t42028H' => 'bol', 'BolC8t49125H' => 'bol', 'BolC8t52538H' => 'bol', 'BolC8t52539H' => 'bol', 'BolC9t56681H' => 'bol', 'BolC9t58266H' => 'bol', 'BolSC21t60294H' => 'bol', 'BraA02t05670Z' => 'bra', 'BraA03t12716Z' => 'bra', 'BraA04t17685Z' => 'bra', 'BraA05t22788Z' => 'bra', 'BraA06t24032Z' => 'bra', 'BraA06t25625Z' => 'bra', 'BraA07t27930Z' => 'bra', 'BraA08t35242Z' => 'bra', 'BraA09t38609Z' => 'bra', 'BraA10t43905Z' => 'bra', 'C02p11060' => 'bna', 'C03p42990' => 'bna', 'C03p67310' => 'bna', 'C04p56990' => 'bna', 'C04p58660' => 'bna', 'C05p09890' => 'bna', 'C05p59680' => 'bna', 'C06p19830' => 'bna', 'C06p53040' => 'bna', 'C07p15230' => 'bna', 'C08p50070' => 'bna', 'C08p50090' => 'bna', 'C09p38330' => 'bna', 'C09p53940' => 'bna', 'CAN.G1014.1' => 'can', 'CAN.G644.30' => 'can', 'CAN.G84.47' => 'can', 'CAN.G919.8' => 'can', 'CANSAT54G0113' => 'cansat', 'CANSAT54G1286' => 'cansat', 'CANSAT64G1020' => 'cansat', 'CARHR008080' => 'chi', 'CARHR008090' => 'chi', 'CARHR012130' => 'chi', 'CARHR038390' => 'chi', 'CARHR082330' => 'chi', 'CARHR120520' => 'chi', 'CARHR151470' => 'chi', 'CARHR190950' => 'chi', 'Carub.0001s0760' => 'cru', 'Carub.0001s1146' => 'cru', 'Carub.0003s0721' => 'cru', 'Carub.0004s0858' => 'cru', 'Carub.0005s1040' => 'cru', 'Carub.0006s2035' => 'cru', 'Carub.0015s0005' => 'cru', 'Ca_01607_v3' => 'car', 'Ca_01677_v3' => 'car', 'Ca_06087_v3' => 'car', 'Ca_19238_v3' => 'car', 'Ca_19373_v3' => 'car', 'Ca_21079_v3' => 'car', 'CBR_g54016' => 'cbr', 'CBR_g54018' => 'cbr', 'CBR_g54020' => 'cbr', 'Cc01_g09780' => 'ccan', 'Cc01_g11680' => 'ccan', 'Cc02_g15610' => 'ccan', 'Cc05_g04350' => 'ccan', 'Cc09_g01580' => 'ccan', 'CDE01G0795' => 'cde', 'CDE02G2024' => 'cde', 'CDE02G2260' => 'cde', 'CDE02G4561' => 'cde', 'CDE05G2733' => 'cde', 'CDE05G3422' => 'cde', 'CDE06G2003' => 'cde', 'CDE08G0576' => 'cde', 'CDE09G0048' => 'cde', 'CDE11G0805' => 'cde', 'Cfa003644' => 'cfa', 'Cfa006290' => 'cfa', 'Cfa010080' => 'cfa', 'Cfa011376' => 'cfa', 'Cfa011576' => 'cfa', 'Cfa011577' => 'cfa', 'Cfa014389' => 'cfa', 'Ciclev10006044m.g' => 'ccl', 'Ciclev10006954m.g' => 'ccl', 'Ciclev10015131m.g' => 'ccl', 'Ciclev10015580m.g' => 'ccl', 'Ciclev10028359m.g' => 'ccl', 'Ciclev10028573m.g' => 'ccl', 'CiPaw.03G159300' => 'cil', 'CiPaw.04G115100' => 'cil', 'CiPaw.09G092800' => 'cil', 'CiPaw.10G071800' => 'cil', 'CiPaw.13G105800' => 'cil', 'CiPaw.13G141000' => 'cil', 'CiPaw.14G103400' => 'cil', 'ClCG01G012700' => 'cla', 'ClCG01G012720' => 'cla', 'ClCG01G021920' => 'cla', 'ClCG02G008870' => 'cla', 'ClCG02G020840' => 'cla', 'ClCG02G021930' => 'cla', 'COL.COLO4_19302' => 'col', 'COL.COLO4_25262' => 'col', 'COL.COLO4_31788' => 'col', 'Cpa.g.c34684' => 'cpa', 'Cpa.g.c36520.1' => 'cpa', 'Cpa.g.c45626' => 'cpa', 'Cpa.g.sc121.17' => 'cpa', 'Cpa.g.sc13.22' => 'cpa', 'Cpa.g.sc87.88' => 'cpa', 'Cre06.g261800' => 'cre', 'CsaV3_1G014500' => 'csa', 'CsaV3_1G014510' => 'csa', 'CsaV3_2G034880' => 'csa', 'CsaV3_6G014760' => 'csa', 'CsaV3_6G021500' => 'csa', 'CsaV3_6G048980' => 'csa', 'CSS0002511' => 'camsi', 'CSS0007556' => 'camsi', 'CSS0008532' => 'camsi', 'CSS0009709' => 'camsi', 'CSS0010486' => 'camsi', 'CSS0016768' => 'camsi', 'CSS0023512' => 'camsi', 'CSS0025341' => 'camsi', 'CSS0027999' => 'camsi', 'CSS0028944' => 'camsi', 'CSS0032292' => 'camsi', 'CSS0032464' => 'camsi', 'CSS0037153' => 'camsi', 'CSS0039256' => 'camsi', 'CSS0048392' => 'camsi', 'CSS0050458' => 'camsi', 'DCAR_004224' => 'dca', 'DCAR_006147' => 'dca', 'DCAR_006465' => 'dca', 'DCAR_008159' => 'dca', 'DCAR_012164' => 'dca', 'DCAR_019764' => 'dca', 'Dinv05418' => 'din', 'Dinv10839' => 'din', 'Dinv12521' => 'din', 'Dinv13900' => 'din', 'Dinv29426' => 'din', 'Duzib150G0263' => 'dzi', 'Duzib168G1178' => 'dzi', 'Duzib168G1924' => 'dzi', 'Duzib170G0299' => 'dzi', 'Duzib170G0813' => 'dzi', 'Duzib235G1128' => 'dzi', 'Duzib248G1060' => 'dzi', 'ECA232G1910' => 'eca', 'ECA233G4621' => 'eca', 'ECA238G1216' => 'eca', 'ECA238G1784' => 'eca', 'ECA248G1242' => 'eca', 'EL10Ac8g20071' => 'bvu', 'EL10Ac9g21086' => 'bvu', 'EL10Ac9g22407' => 'bvu', 'EL10Ac9g22412' => 'bvu', 'Eucgr.A01119' => 'egr', 'Eucgr.E04043' => 'egr', 'Eucgr.J00428' => 'egr', 'Eucgr.J00958' => 'egr', 'FAN11G3091' => 'fan', 'FAN11G3651' => 'fan', 'FAN16G2566' => 'fan', 'FAN21G3155' => 'fan', 'FAN21G3400' => 'fan', 'FAN21G3543' => 'fan', 'FAN25G0234' => 'fan', 'FAN25G1422' => 'fan', 'FAN25G3392' => 'fan', 'FvH4_3g01940' => 'fve', 'FvH4_3g29870' => 'fve', 'FvH4_3g33680' => 'fve', 'Glyma.09G004200' => 'gma', 'Glyma.11G151288' => 'gma', 'Glyma.11G189100' => 'gma', 'Glyma.12G072500' => 'gma', 'Glyma.12G085500' => 'gma', 'Glyma.12G181800' => 'gma', 'Glyma.12G193000' => 'gma', 'Glyma.13G309300' => 'gma', 'Glyma.13G319000' => 'gma', 'Glyma.17G012600' => 'gma', 'Gohir.A06G148600' => 'ghi', 'Gohir.A07G115800' => 'ghi', 'Gohir.A08G003600' => 'ghi', 'Gohir.A09G093300' => 'ghi', 'Gohir.A09G105400' => 'ghi', 'Gohir.A09G105500' => 'ghi', 'Gohir.D06G154600' => 'ghi', 'Gohir.D07G120200' => 'ghi', 'Gohir.D08G013900' => 'ghi', 'Gohir.D09G093100' => 'ghi', 'Gohir.D09G102200' => 'ghi', 'Gohir.D09G102300' => 'ghi', 'Gorai.001G129400' => 'gra', 'Gorai.004G008200' => 'gra', 'Gorai.006G109800' => 'gra', 'Gorai.006G119500' => 'gra', 'Gorai.006G121300' => 'gra', 'Gorai.010G180700' => 'gra', 'GSVIVG01012716001' => 'vvi', 'GSVIVG01025118001' => 'vvi', 'GSVIVG01030439001' => 'vvi', 'GSVIVG01031397001' => 'vvi', 'HanXRQChr01g0004201' => 'han', 'HanXRQChr02g0054941' => 'han', 'HanXRQChr05g0141811' => 'han', 'HanXRQChr07g0197751' => 'han', 'HanXRQChr11g0346691' => 'han', 'HanXRQChr13g0396971' => 'han', 'HanXRQChr14g0432951' => 'han', 'HanXRQChr14g0452001' => 'han', 'HanXRQChr15g0496681' => 'han', 'HanXRQChr17g0557491' => 'han', 'HanXRQChr17g0557501' => 'han', 'Haze_06809' => 'cav', 'Haze_12852' => 'cav', 'Haze_15850' => 'cav', 'Haze_23446' => 'cav', 'Haze_23942' => 'cav', 'Haze_23943' => 'cav', 'Hma1.2p1_0091F.1_g046450' => 'hma', 'Hma1.2p1_0128F.1_g059910' => 'hma', 'Hma1.2p1_0249F.1_g102260' => 'hma', 'Hma1.2p1_0453F.1_g156190' => 'hma', 'Hma1.2p1_0695F.1_g204380' => 'hma', 'Hma1.2p1_0749F.1_g212650' => 'hma', 'Hma1.2p1_2156F.1_g315420' => 'hma', 'Hma1.2p1_2686F.1_g326940' => 'hma', 'HPP92_006428' => 'vpl', 'HPP92_012069' => 'vpl', 'HPP92_014129' => 'vpl', 'HPP92_014133' => 'vpl', 'HPP92_017315' => 'vpl', 'HPP92_026445' => 'vpl', 'HPP92_026446' => 'vpl', 'Hund00774' => 'sun', 'Hund07682' => 'sun', 'Hund21413' => 'sun', 'Hund23462' => 'sun', 'Hund23463' => 'sun', 'Lalb_Chr03g0027911' => 'lal', 'Lalb_Chr13g0304271' => 'lal', 'Lalb_Chr19g0137471' => 'lal', 'Lalb_Chr22g0350651' => 'lal', 'Lalb_Chr24g0395151' => 'lal', 'Lj1A1231T40' => 'lonja', 'Lj1A221T48' => 'lonja', 'Lj1C924T12' => 'lonja', 'Lj2C993G6' => 'lonja', 'Lj3g0005790' => 'lja', 'Lj3g0015432' => 'lja', 'Lj3g0017722' => 'lja', 'Lj3g0018497' => 'lja', 'Lj4g0025071' => 'lja', 'Lsat_1_v5_gn_1_129680' => 'lsa', 'Lsat_1_v5_gn_2_25321' => 'lsa', 'Lsat_1_v5_gn_2_95461' => 'lsa', 'Lsat_1_v5_gn_4_159620' => 'lsa', 'Lsat_1_v5_gn_6_41301' => 'lsa', 'Lsat_1_v5_gn_6_74660' => 'lsa', 'Lsat_1_v5_gn_7_11520' => 'lsa', 'Lsat_1_v5_gn_9_67680' => 'lsa', 'Manes.04G008300' => 'mes', 'Manes.04G008400' => 'mes', 'Manes.04G026500' => 'mes', 'Manes.10G135300' => 'mes', 'Manes.11G157300' => 'mes', 'Manes.12G074000' => 'mes', 'Manes.16G006200' => 'mes', 'Manes.17G026400' => 'mes', 'Mapoly0024s0086' => 'mpo', 'Mapoly0024s0087' => 'mpo', 'Mapoly0071s0057' => 'mpo', 'Mapoly0204s0012' => 'mpo', 'MBI04_g37681_MAGBIO' => 'mbi', 'MBI05_g17779_MAGBIO' => 'mbi', 'MBI12_g31184_MAGBIO' => 'mbi', 'MBI17_g11083_MAGBIO' => 'mbi', 'MBI18_g03883_MAGBIO' => 'mbi', 'MBI18_g28940_MAGBIO' => 'mbi', 'MCO01G690' => 'mco', 'MD03G1109900' => 'mdo', 'MD03G1134800' => 'mdo', 'MD05G1348000' => 'mdo', 'MD10G1322400' => 'mdo', 'MD11G1123300' => 'mdo', 'MD11G1157600' => 'mdo', 'Medtr2g084875' => 'mtr', 'Medtr2g088130' => 'mtr', 'Medtr4g055310' => 'mtr', 'Medtr4g061070' => 'mtr', 'Medtr4g132250' => 'mtr', 'MELO3C004795.2' => 'cme', 'MELO3C004797.2' => 'cme', 'MELO3C007396.2' => 'cme', 'MELO3C019277.2' => 'cme', 'MELO3C021449.2' => 'cme', 'MELO3C025736.2' => 'cme', 'Migut.D02175' => 'egut', 'Migut.H01573' => 'egut', 'Migut.M01327' => 'egut', 'Migut.N02513' => 'egut', 'MSTRG.14638' => 'ama', 'MSTRG.18632' => 'ama', 'MSTRG.7203' => 'ama', 'Nitab4.5_0000533g0140' => 'nta', 'Nitab4.5_0000888g0150' => 'nta', 'Nitab4.5_0001453g0040' => 'nta', 'Nitab4.5_0002827g0090' => 'nta', 'Nitab4.5_0003082g0040' => 'nta', 'Nitab4.5_0007799g0040' => 'nta', 'Nitab4.5_0008983g0010' => 'nta', 'Nitab4.5_0009017g0020' => 'nta', 'Nn1g02132' => 'nnu', 'Nn1g03492' => 'nnu', 'Nn1g03493' => 'nnu', 'Nn1g03494' => 'nnu', 'Nn1g07164' => 'nnu', 'Nn1g07291' => 'nnu', 'Nn2g10655' => 'nnu', 'Nn2g11652' => 'nnu', 'Nn2g14008' => 'nnu', 'Nn3g17476' => 'nnu', 'Nn3g17477' => 'nnu', 'Nn4g22370' => 'nnu', 'Nn4g25255' => 'nnu', 'Nn5g27755' => 'nnu', 'Nn6g34260' => 'nnu', 'Nn6g35041' => 'nnu', 'Oeu005924.1' => 'oeu', 'Oeu008383.1' => 'oeu', 'Oeu014928.1' => 'oeu', 'Oeu019889.1' => 'oeu', 'Oeu022271.1' => 'oeu', 'Oeu025271.1' => 'oeu', 'Oeu036302.1' => 'oeu', 'Oeu044100.1' => 'oeu', 'Os01g0528300' => 'osa', 'Os03g0286200' => 'osa', 'Os04g0406600' => 'osa', 'Os07g0512000' => 'osa', 'Os07g0694600' => 'osa', 'Os08g0411000' => 'osa', 'Os09g0565700' => 'osa', 'Os09g0566050' => 'osa', 'Os10g0523700' => 'osa', 'Peaxi162Scf00002g00514' => 'pax', 'Peaxi162Scf00047g01817' => 'pax', 'Peaxi162Scf00114g00001' => 'pax', 'Peaxi162Scf00147g00613' => 'pax', 'Peaxi162Scf00389g00425' => 'pax', 'PGR042G1139' => 'pgr', 'PGR042G3273' => 'pgr', 'PGR102G2180' => 'pgr', 'PGR119G0234' => 'pgr', 'PGR119G0668' => 'pgr', 'PGSC0003DMG400007122' => 'stu', 'PGSC0003DMG400016478' => 'stu', 'PGSC0003DMG400025374' => 'stu', 'PGSC0003DMG400026536' => 'stu', 'Phvul.003G079600' => 'pvu', 'Phvul.005G115600' => 'pvu', 'Phvul.005G127100' => 'pvu', 'Phvul.006G149500' => 'pvu', 'Phvul.006G149600' => 'pvu', 'Phvul.011G071800' => 'pvu', 'Phvul.011G090400' => 'pvu', 'Potri.004G013400' => 'ptr', 'Potri.004G188100' => 'ptr', 'Potri.008G195500' => 'ptr', 'Potri.009G148800' => 'ptr', 'Potri.011G004700' => 'ptr', 'Pp3c17_22810' => 'ppa', 'Pp3c18_4480' => 'ppa', 'Pp3c19_13030' => 'ppa', 'Pp3c1_33620' => 'ppa', 'Pp3c2_9380' => 'ppa', 'PRCOL_00001023' => 'pco', 'Prupe.3G216300' => 'ppe', 'Prupe.4G019500' => 'ppe', 'Prupe.6G092500' => 'ppe', 'Prupe.6G119200' => 'ppe', 'Psat0s1945g0080' => 'psa', 'Psat0s4167g0040' => 'psa', 'Psat1g185800' => 'psa', 'Psat4g006440' => 'psa', 'Psat4g006480' => 'psa', 'Psat4g168120' => 'psa', 'Psat5g255680' => 'psa', 'Psat5g261760' => 'psa', 'Psat7g222120' => 'psa', 'PSO063G7252' => 'pso', 'PSO170G4778' => 'pso', 'PSO210G2249' => 'pso', 'PSO339G2411' => 'pso', 'PSO339G2457' => 'pso', 'PSO339G2854' => 'pso', 'PSO339G4288' => 'pso', 'PSO339G4615' => 'pso', 'PSO384G2796' => 'pso', 'PSO384G2940' => 'pso', 'PSO384G4227' => 'pso', 'PSO478G1425' => 'pso', 'PSO541G3863' => 'pso', 'PSO675G0507' => 'pso', 'PSO782G0338' => 'pso', 'PSO832G0644' => 'pso', 'QL01p013664' => 'qlo', 'QL01p036598' => 'qlo', 'QL05p072984' => 'qlo', 'QL08p005768' => 'qlo', 'QL08p032743' => 'qlo', 'QL93p0073_0439' => 'qlo', 'QL93p0073_0444' => 'qlo', 'RcHm_v2.0_Chr5g0002851' => 'rch', 'RcHm_v2.0_Chr5g0055201' => 'rch', 'RcHm_v2.0_Chr5g0061191' => 'rch', 'RcHm_v2.0_Chr7g0203231' => 'rch', 'Rhsim01G0208100' => 'rsi', 'Rhsim01G0208200' => 'rsi', 'Rhsim02G0106500' => 'rsi', 'Rhsim03G0107900' => 'rsi', 'Rhsim06G0163400' => 'rsi', 'Rhsim13G0105200' => 'rsi', 'Sabra04G0006300' => 'sbr', 'Sabra04G0127000' => 'sbr', 'Sabra08G0148700' => 'sbr', 'Sabra09G0117400' => 'sbr', 'SalBow1G3326' => 'sbo', 'SalBow3G3228' => 'sbo', 'SalBow6G1634' => 'sbo', 'SalBow6G3603' => 'sbo', 'SalBow6G5266' => 'sbo', 'SalBow7G2265' => 'sbo', 'SalBow8G0850' => 'sbo', 'SalBow8G2592' => 'sbo', 'Sc05g0009240' => 'sci', 'Sc12g0002300' => 'sci', 'Sc21g0000100' => 'sci', 'Sc21g0004720' => 'sci', 'Sed0002949' => 'sed', 'Sed0004114' => 'sed', 'Sed0004306' => 'sed', 'Sed0006172' => 'sed', 'Sed0008413' => 'sed', 'Sed0013809' => 'sed', 'Sed0019556' => 'sed', 'SEGI_03570' => 'sgi', 'SEGI_07859' => 'sgi', 'SEGI_15042' => 'sgi', 'SEGI_16263' => 'sgi', 'SEGI_16552' => 'sgi', 'SEGI_24331' => 'sgi', 'SEGI_27316' => 'sgi', 'SEGI_29521' => 'sgi', 'SEGI_41342' => 'sgi', 'SGA_v2.0_scaffold27G11617' => 'sas', 'SGA_v2.0_scaffold316G48428' => 'sas', 'SGA_v2.0_scaffold49G18261' => 'sas', 'SGA_v2.0_scaffold7G03831' => 'sas', 'SGA_v2.0_scaffold93G28359' => 'sas', 'SHI02210' => 'shi', 'SHI06028' => 'shi', 'SHI06321' => 'shi', 'SMO111G0012' => 'smo', 'SMO228G0080' => 'smo', 'SMO356G0756' => 'smo', 'Solyc02g080620.3' => 'sly', 'Solyc06g074530.1' => 'sly', 'Solyc11g066890.1' => 'sly', 'Solyc11g072520.3' => 'sly', 'Sopen02g025330' => 'spe', 'Sopen06g031000' => 'spe', 'Sopen09g008240' => 'spe', 'Sopen09g025210' => 'spe', 'Sopen11g026600' => 'spe', 'Sopen11g030170' => 'spe', 'Sp1g10420' => 'spa', 'Sp3g06570' => 'spa', 'Sp4g10660' => 'spa', 'Sp5g16460' => 'spa', 'Sp6g22710' => 'spa', 'TAR365G0112' => 'tar', 'TAR369G0717' => 'tar', 'TAR374G0976' => 'tar', 'TAR623G1128' => 'tar', 'TAR626G1937' => 'tar', 'TAR627G0123' => 'tar', 'TAR628G0305' => 'tar', 'TAR636G1176' => 'tar', 'TAR636G2442' => 'tar', 'THA.LOC104800556' => 'tha', 'THA.LOC104809501' => 'tha', 'THA.LOC104815126' => 'tha', 'THA.LOC104815732' => 'tha', 'THA.LOC104823528' => 'tha', 'Thecc.02G365600' => 'tca', 'Thecc.06G222300' => 'tca', 'Thecc.09G261800' => 'tca', 'Thecc.09G291400' => 'tca', 'Thhalv10003028m.g' => 'esa', 'Thhalv10007886m.g' => 'esa', 'Thhalv10016085m.g' => 'esa', 'Thhalv10016681m.g' => 'esa', 'Thhalv10020951m.g' => 'esa', 'TPR.G15598' => 'tpr', 'TPR.G29305' => 'tpr', 'TPR.G32395' => 'tpr', 'TPR.G36998' => 'tpr', 'TPR.G4227' => 'tpr', 'TWI18G1433' => 'twi', 'TWI31G0755' => 'twi', 'TWI38G0912' => 'twi', 'TWI75G1097' => 'twi', 'TWI75G1619' => 'twi', 'TWI79G1336' => 'twi', 'unitig_0.g943' => 'ugi', 'unitig_0.g944' => 'ugi', 'unitig_22.g6646' => 'ugi', 'unitig_37.g12681' => 'ugi', 'unitig_8.g3290' => 'ugi', 'vmacro03278' => 'vma', 'vmacro12197' => 'vma', 'vmacro14478' => 'vma', 'vmacro15787' => 'vma', 'vmacro15789' => 'vma', 'vmacro15790' => 'vma', 'vmacro15806' => 'vma', 'vmacro22907' => 'vma', 'vmacro22908' => 'vma', 'vmacro22909' => 'vma', 'vmacro23108' => 'vma', 'VMungo0540G0540' => 'vmu', 'VMungo0540G2468' => 'vmu', 'VMungo1080G0390' => 'vmu', 'VMungo1080G1165' => 'vmu', 'VMungo1127G0170' => 'vmu', 'VMungo1127G2099' => 'vmu', 'VMungo1215G3013' => 'vmu', 'Zm00001eb013110' => 'zma', 'Zm00001eb084260' => 'zma', 'Zm00001eb096110' => 'zma', 'Zm00001eb217510' => 'zma', 'Zm00001eb322550' => 'zma', 'Zm00001eb390770' => 'zma', 'Zm00001eb397170' => 'zma', 'Zm00001eb404610' => 'zma', 'Zm00001eb421790' => 'zma' ), 'gf_id' => 'HOM05D000911', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000911' ), 'data_identifier' => 'HOM05D000911', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000911', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27780' => 'bna', 'A03p35380' => 'bna', 'A04p21160' => 'bna', 'A05p40570' => 'bna', 'A06p26900' => 'bna', 'A08p33230' => 'bna', 'A09p65960' => 'bna', 'A10p18290' => 'bna', 'Aa31LG1G12990' => 'aar', 'Aa31LG1G2980' => 'aar', 'Aa31LG4G14320' => 'aar', 'Aa31LG7G11800' => 'aar', 'Aa31sc36G50' => 'aar', 'Aa31sc36G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3721' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5459' => 'aag', 'Actinidia03028' => 'ach', 'Actinidia03753' => 'ach', 'Actinidia04187' => 'ach', 'Actinidia05509' => 'ach', 'Actinidia24180' => 'ach', 'Actinidia26906' => 'ach', 'Actinidia37097' => 'ach', 'Actinidia38249' => 'ach', 'Ah.01g003470' => 'amhyb', 'Ah.01g004580' => 'amhyb', 'Ah.01g014850' => 'amhyb', 'Ah.01g016830' => 'amhyb', 'Ah.14g088000' => 'amhyb', 'AL1G22980' => 'aly', 'AL3G18990' => 'aly', 'AL4G22440' => 'aly', 'AL4G33180' => 'aly', 'AL5G22920' => 'aly', 'AL6G33660' => 'aly', 'AL8G20720' => 'aly', 'Aqoxy1G00935' => 'aox', 'Aqoxy1G02094' => 'aox', 'Aqoxy2G01239' => 'aox', 'Aqoxy4G01870' => 'aox', 'Aqoxy7G00450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.36ZVTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71EM27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5D6C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH3WRE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3NCM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RIM768' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YB5YRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z36GDV' => 'arhy', 'AT1G08250' => 'ath', 'AT1G11790' => 'ath', 'AT2G27820' => 'ath', 'AT3G07630' => 'ath', 'AT3G44720' => 'ath', 'AT5G22630' => 'ath', 'ATR0693G304' => 'atr', 'ATR0794G109' => 'atr', 'ATR0820G120' => 'atr', 'ATR1159G064' => 'atr', 'Atru.chr10.2239' => 'acertr', 'Atru.chr3.3371' => 'acertr', 'Atru.chr6.3202' => 'acertr', 'AUR62006499' => 'cqu', 'AUR62012718' => 'cqu', 'AUR62021938' => 'cqu', 'AUR62023932' => 'cqu', 'AUR62025034' => 'cqu', 'AUR62025035' => 'cqu', 'AUR62038307' => 'cqu', 'AUR62043466' => 'cqu', 'BcaB02g10748' => 'bca', 'BcaB03g13231' => 'bca', 'BcaB03g14689' => 'bca', 'BcaB05g22716' => 'bca', 'BcaB06g28172' => 'bca', 'BcaB08g36413' => 'bca', 'BcaC01g02186' => 'bca', 'BcaC01g04272' => 'bca', 'BcaC02g08080' => 'bca', 'BcaC02g08227' => 'bca', 'BcaC03g13901' => 'bca', 'BcaC04g19593' => 'bca', 'BcaC04g20874' => 'bca', 'BcaC05g29557' => 'bca', 'BcaC06g35505' => 'bca', 'BcaC07g41954' => 'bca', 'BcaC07g41955' => 'bca', 'BcaC07g41956' => 'bca', 'BcaC07g42519' => 'bca', 'BcaC07g42520' => 'bca', 'BcaC07g42523' => 'bca', 'BcaC07g42524' => 'bca', 'BcaC07g42525' => 'bca', 'BcaC08g47480' => 'bca', 'BcaC08g47481' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00530' => 'bna', 'BolC2t07178H' => 'bol', 'BolC3t16567H' => 'bol', 'BolC4t27234H' => 'bol', 'BolC5t29728H' => 'bol', 'BolC5t34622H' => 'bol', 'BolC6t40321H' => 'bol', 'BolC7t42028H' => 'bol', 'BolC8t49125H' => 'bol', 'BolC8t52538H' => 'bol', 'BolC8t52539H' => 'bol', 'BolC9t56681H' => 'bol', 'BolC9t58266H' => 'bol', 'BolSC21t60294H' => 'bol', 'BraA02t05670Z' => 'bra', 'BraA03t12716Z' => 'bra', 'BraA04t17685Z' => 'bra', 'BraA05t22788Z' => 'bra', 'BraA06t24032Z' => 'bra', 'BraA06t25625Z' => 'bra', 'BraA07t27930Z' => 'bra', 'BraA08t35242Z' => 'bra', 'BraA09t38609Z' => 'bra', 'BraA10t43905Z' => 'bra', 'C02p11060' => 'bna', 'C03p42990' => 'bna', 'C03p67310' => 'bna', 'C04p56990' => 'bna', 'C04p58660' => 'bna', 'C05p09890' => 'bna', 'C05p59680' => 'bna', 'C06p19830' => 'bna', 'C06p53040' => 'bna', 'C07p15230' => 'bna', 'C08p50070' => 'bna', 'C08p50090' => 'bna', 'C09p38330' => 'bna', 'C09p53940' => 'bna', 'CAN.G1014.1' => 'can', 'CAN.G644.30' => 'can', 'CAN.G84.47' => 'can', 'CAN.G919.8' => 'can', 'CANSAT54G0113' => 'cansat', 'CANSAT54G1286' => 'cansat', 'CANSAT64G1020' => 'cansat', 'CARHR008080' => 'chi', 'CARHR008090' => 'chi', 'CARHR012130' => 'chi', 'CARHR038390' => 'chi', 'CARHR082330' => 'chi', 'CARHR120520' => 'chi', 'CARHR151470' => 'chi', 'CARHR190950' => 'chi', 'Carub.0001s0760' => 'cru', 'Carub.0001s1146' => 'cru', 'Carub.0003s0721' => 'cru', 'Carub.0004s0858' => 'cru', 'Carub.0005s1040' => 'cru', 'Carub.0006s2035' => 'cru', 'Carub.0015s0005' => 'cru', 'Ca_01607_v3' => 'car', 'Ca_01677_v3' => 'car', 'Ca_06087_v3' => 'car', 'Ca_19238_v3' => 'car', 'Ca_19373_v3' => 'car', 'Ca_21079_v3' => 'car', 'CBR_g54016' => 'cbr', 'CBR_g54018' => 'cbr', 'CBR_g54020' => 'cbr', 'Cc01_g09780' => 'ccan', 'Cc01_g11680' => 'ccan', 'Cc02_g15610' => 'ccan', 'Cc05_g04350' => 'ccan', 'Cc09_g01580' => 'ccan', 'CDE01G0795' => 'cde', 'CDE02G2024' => 'cde', 'CDE02G2260' => 'cde', 'CDE02G4561' => 'cde', 'CDE05G2733' => 'cde', 'CDE05G3422' => 'cde', 'CDE06G2003' => 'cde', 'CDE08G0576' => 'cde', 'CDE09G0048' => 'cde', 'CDE11G0805' => 'cde', 'Cfa003644' => 'cfa', 'Cfa006290' => 'cfa', 'Cfa010080' => 'cfa', 'Cfa011376' => 'cfa', 'Cfa011576' => 'cfa', 'Cfa011577' => 'cfa', 'Cfa014389' => 'cfa', 'Ciclev10006044m.g' => 'ccl', 'Ciclev10006954m.g' => 'ccl', 'Ciclev10015131m.g' => 'ccl', 'Ciclev10015580m.g' => 'ccl', 'Ciclev10028359m.g' => 'ccl', 'Ciclev10028573m.g' => 'ccl', 'CiPaw.03G159300' => 'cil', 'CiPaw.04G115100' => 'cil', 'CiPaw.09G092800' => 'cil', 'CiPaw.10G071800' => 'cil', 'CiPaw.13G105800' => 'cil', 'CiPaw.13G141000' => 'cil', 'CiPaw.14G103400' => 'cil', 'ClCG01G012700' => 'cla', 'ClCG01G012720' => 'cla', 'ClCG01G021920' => 'cla', 'ClCG02G008870' => 'cla', 'ClCG02G020840' => 'cla', 'ClCG02G021930' => 'cla', 'COL.COLO4_19302' => 'col', 'COL.COLO4_25262' => 'col', 'COL.COLO4_31788' => 'col', 'Cpa.g.c34684' => 'cpa', 'Cpa.g.c36520.1' => 'cpa', 'Cpa.g.c45626' => 'cpa', 'Cpa.g.sc121.17' => 'cpa', 'Cpa.g.sc13.22' => 'cpa', 'Cpa.g.sc87.88' => 'cpa', 'Cre06.g261800' => 'cre', 'CsaV3_1G014500' => 'csa', 'CsaV3_1G014510' => 'csa', 'CsaV3_2G034880' => 'csa', 'CsaV3_6G014760' => 'csa', 'CsaV3_6G021500' => 'csa', 'CsaV3_6G048980' => 'csa', 'CSS0002511' => 'camsi', 'CSS0007556' => 'camsi', 'CSS0008532' => 'camsi', 'CSS0009709' => 'camsi', 'CSS0010486' => 'camsi', 'CSS0016768' => 'camsi', 'CSS0023512' => 'camsi', 'CSS0025341' => 'camsi', 'CSS0027999' => 'camsi', 'CSS0028944' => 'camsi', 'CSS0032292' => 'camsi', 'CSS0032464' => 'camsi', 'CSS0037153' => 'camsi', 'CSS0039256' => 'camsi', 'CSS0048392' => 'camsi', 'CSS0050458' => 'camsi', 'DCAR_004224' => 'dca', 'DCAR_006147' => 'dca', 'DCAR_006465' => 'dca', 'DCAR_008159' => 'dca', 'DCAR_012164' => 'dca', 'DCAR_019764' => 'dca', 'Dinv05418' => 'din', 'Dinv10839' => 'din', 'Dinv12521' => 'din', 'Dinv13900' => 'din', 'Dinv29426' => 'din', 'Duzib150G0263' => 'dzi', 'Duzib168G1178' => 'dzi', 'Duzib168G1924' => 'dzi', 'Duzib170G0299' => 'dzi', 'Duzib170G0813' => 'dzi', 'Duzib235G1128' => 'dzi', 'Duzib248G1060' => 'dzi', 'ECA232G1910' => 'eca', 'ECA233G4621' => 'eca', 'ECA238G1216' => 'eca', 'ECA238G1784' => 'eca', 'ECA248G1242' => 'eca', 'EL10Ac8g20071' => 'bvu', 'EL10Ac9g21086' => 'bvu', 'EL10Ac9g22407' => 'bvu', 'EL10Ac9g22412' => 'bvu', 'Eucgr.A01119' => 'egr', 'Eucgr.E04043' => 'egr', 'Eucgr.J00428' => 'egr', 'Eucgr.J00958' => 'egr', 'FAN11G3091' => 'fan', 'FAN11G3651' => 'fan', 'FAN16G2566' => 'fan', 'FAN21G3155' => 'fan', 'FAN21G3400' => 'fan', 'FAN21G3543' => 'fan', 'FAN25G0234' => 'fan', 'FAN25G1422' => 'fan', 'FAN25G3392' => 'fan', 'FvH4_3g01940' => 'fve', 'FvH4_3g29870' => 'fve', 'FvH4_3g33680' => 'fve', 'Glyma.09G004200' => 'gma', 'Glyma.11G151288' => 'gma', 'Glyma.11G189100' => 'gma', 'Glyma.12G072500' => 'gma', 'Glyma.12G085500' => 'gma', 'Glyma.12G181800' => 'gma', 'Glyma.12G193000' => 'gma', 'Glyma.13G309300' => 'gma', 'Glyma.13G319000' => 'gma', 'Glyma.17G012600' => 'gma', 'Gohir.A06G148600' => 'ghi', 'Gohir.A07G115800' => 'ghi', 'Gohir.A08G003600' => 'ghi', 'Gohir.A09G093300' => 'ghi', 'Gohir.A09G105400' => 'ghi', 'Gohir.A09G105500' => 'ghi', 'Gohir.D06G154600' => 'ghi', 'Gohir.D07G120200' => 'ghi', 'Gohir.D08G013900' => 'ghi', 'Gohir.D09G093100' => 'ghi', 'Gohir.D09G102200' => 'ghi', 'Gohir.D09G102300' => 'ghi', 'Gorai.001G129400' => 'gra', 'Gorai.004G008200' => 'gra', 'Gorai.006G109800' => 'gra', 'Gorai.006G119500' => 'gra', 'Gorai.006G121300' => 'gra', 'Gorai.010G180700' => 'gra', 'GSVIVG01012716001' => 'vvi', 'GSVIVG01025118001' => 'vvi', 'GSVIVG01030439001' => 'vvi', 'GSVIVG01031397001' => 'vvi', 'HanXRQChr01g0004201' => 'han', 'HanXRQChr02g0054941' => 'han', 'HanXRQChr05g0141811' => 'han', 'HanXRQChr07g0197751' => 'han', 'HanXRQChr11g0346691' => 'han', 'HanXRQChr13g0396971' => 'han', 'HanXRQChr14g0432951' => 'han', 'HanXRQChr14g0452001' => 'han', 'HanXRQChr15g0496681' => 'han', 'HanXRQChr17g0557491' => 'han', 'HanXRQChr17g0557501' => 'han', 'Haze_06809' => 'cav', 'Haze_12852' => 'cav', 'Haze_15850' => 'cav', 'Haze_23446' => 'cav', 'Haze_23942' => 'cav', 'Haze_23943' => 'cav', 'Hma1.2p1_0091F.1_g046450' => 'hma', 'Hma1.2p1_0128F.1_g059910' => 'hma', 'Hma1.2p1_0249F.1_g102260' => 'hma', 'Hma1.2p1_0453F.1_g156190' => 'hma', 'Hma1.2p1_0695F.1_g204380' => 'hma', 'Hma1.2p1_0749F.1_g212650' => 'hma', 'Hma1.2p1_2156F.1_g315420' => 'hma', 'Hma1.2p1_2686F.1_g326940' => 'hma', 'HPP92_006428' => 'vpl', 'HPP92_012069' => 'vpl', 'HPP92_014129' => 'vpl', 'HPP92_014133' => 'vpl', 'HPP92_017315' => 'vpl', 'HPP92_026445' => 'vpl', 'HPP92_026446' => 'vpl', 'Hund00774' => 'sun', 'Hund07682' => 'sun', 'Hund21413' => 'sun', 'Hund23462' => 'sun', 'Hund23463' => 'sun', 'Lalb_Chr03g0027911' => 'lal', 'Lalb_Chr13g0304271' => 'lal', 'Lalb_Chr19g0137471' => 'lal', 'Lalb_Chr22g0350651' => 'lal', 'Lalb_Chr24g0395151' => 'lal', 'Lj1A1231T40' => 'lonja', 'Lj1A221T48' => 'lonja', 'Lj1C924T12' => 'lonja', 'Lj2C993G6' => 'lonja', 'Lj3g0005790' => 'lja', 'Lj3g0015432' => 'lja', 'Lj3g0017722' => 'lja', 'Lj3g0018497' => 'lja', 'Lj4g0025071' => 'lja', 'Lsat_1_v5_gn_1_129680' => 'lsa', 'Lsat_1_v5_gn_2_25321' => 'lsa', 'Lsat_1_v5_gn_2_95461' => 'lsa', 'Lsat_1_v5_gn_4_159620' => 'lsa', 'Lsat_1_v5_gn_6_41301' => 'lsa', 'Lsat_1_v5_gn_6_74660' => 'lsa', 'Lsat_1_v5_gn_7_11520' => 'lsa', 'Lsat_1_v5_gn_9_67680' => 'lsa', 'Manes.04G008300' => 'mes', 'Manes.04G008400' => 'mes', 'Manes.04G026500' => 'mes', 'Manes.10G135300' => 'mes', 'Manes.11G157300' => 'mes', 'Manes.12G074000' => 'mes', 'Manes.16G006200' => 'mes', 'Manes.17G026400' => 'mes', 'Mapoly0024s0086' => 'mpo', 'Mapoly0024s0087' => 'mpo', 'Mapoly0071s0057' => 'mpo', 'Mapoly0204s0012' => 'mpo', 'MBI04_g37681_MAGBIO' => 'mbi', 'MBI05_g17779_MAGBIO' => 'mbi', 'MBI12_g31184_MAGBIO' => 'mbi', 'MBI17_g11083_MAGBIO' => 'mbi', 'MBI18_g03883_MAGBIO' => 'mbi', 'MBI18_g28940_MAGBIO' => 'mbi', 'MCO01G690' => 'mco', 'MD03G1109900' => 'mdo', 'MD03G1134800' => 'mdo', 'MD05G1348000' => 'mdo', 'MD10G1322400' => 'mdo', 'MD11G1123300' => 'mdo', 'MD11G1157600' => 'mdo', 'Medtr2g084875' => 'mtr', 'Medtr2g088130' => 'mtr', 'Medtr4g055310' => 'mtr', 'Medtr4g061070' => 'mtr', 'Medtr4g132250' => 'mtr', 'MELO3C004795.2' => 'cme', 'MELO3C004797.2' => 'cme', 'MELO3C007396.2' => 'cme', 'MELO3C019277.2' => 'cme', 'MELO3C021449.2' => 'cme', 'MELO3C025736.2' => 'cme', 'Migut.D02175' => 'egut', 'Migut.H01573' => 'egut', 'Migut.M01327' => 'egut', 'Migut.N02513' => 'egut', 'MSTRG.14638' => 'ama', 'MSTRG.18632' => 'ama', 'MSTRG.7203' => 'ama', 'Nitab4.5_0000533g0140' => 'nta', 'Nitab4.5_0000888g0150' => 'nta', 'Nitab4.5_0001453g0040' => 'nta', 'Nitab4.5_0002827g0090' => 'nta', 'Nitab4.5_0003082g0040' => 'nta', 'Nitab4.5_0007799g0040' => 'nta', 'Nitab4.5_0008983g0010' => 'nta', 'Nitab4.5_0009017g0020' => 'nta', 'Nn1g02132' => 'nnu', 'Nn1g03492' => 'nnu', 'Nn1g03493' => 'nnu', 'Nn1g03494' => 'nnu', 'Nn1g07164' => 'nnu', 'Nn1g07291' => 'nnu', 'Nn2g10655' => 'nnu', 'Nn2g11652' => 'nnu', 'Nn2g14008' => 'nnu', 'Nn3g17476' => 'nnu', 'Nn3g17477' => 'nnu', 'Nn4g22370' => 'nnu', 'Nn4g25255' => 'nnu', 'Nn5g27755' => 'nnu', 'Nn6g34260' => 'nnu', 'Nn6g35041' => 'nnu', 'Oeu005924.1' => 'oeu', 'Oeu008383.1' => 'oeu', 'Oeu014928.1' => 'oeu', 'Oeu019889.1' => 'oeu', 'Oeu022271.1' => 'oeu', 'Oeu025271.1' => 'oeu', 'Oeu036302.1' => 'oeu', 'Oeu044100.1' => 'oeu', 'Os01g0528300' => 'osa', 'Os03g0286200' => 'osa', 'Os04g0406600' => 'osa', 'Os07g0512000' => 'osa', 'Os07g0694600' => 'osa', 'Os08g0411000' => 'osa', 'Os09g0565700' => 'osa', 'Os09g0566050' => 'osa', 'Os10g0523700' => 'osa', 'Peaxi162Scf00002g00514' => 'pax', 'Peaxi162Scf00047g01817' => 'pax', 'Peaxi162Scf00114g00001' => 'pax', 'Peaxi162Scf00147g00613' => 'pax', 'Peaxi162Scf00389g00425' => 'pax', 'PGR042G1139' => 'pgr', 'PGR042G3273' => 'pgr', 'PGR102G2180' => 'pgr', 'PGR119G0234' => 'pgr', 'PGR119G0668' => 'pgr', 'PGSC0003DMG400007122' => 'stu', 'PGSC0003DMG400016478' => 'stu', 'PGSC0003DMG400025374' => 'stu', 'PGSC0003DMG400026536' => 'stu', 'Phvul.003G079600' => 'pvu', 'Phvul.005G115600' => 'pvu', 'Phvul.005G127100' => 'pvu', 'Phvul.006G149500' => 'pvu', 'Phvul.006G149600' => 'pvu', 'Phvul.011G071800' => 'pvu', 'Phvul.011G090400' => 'pvu', 'Potri.004G013400' => 'ptr', 'Potri.004G188100' => 'ptr', 'Potri.008G195500' => 'ptr', 'Potri.009G148800' => 'ptr', 'Potri.011G004700' => 'ptr', 'Pp3c17_22810' => 'ppa', 'Pp3c18_4480' => 'ppa', 'Pp3c19_13030' => 'ppa', 'Pp3c1_33620' => 'ppa', 'Pp3c2_9380' => 'ppa', 'PRCOL_00001023' => 'pco', 'Prupe.3G216300' => 'ppe', 'Prupe.4G019500' => 'ppe', 'Prupe.6G092500' => 'ppe', 'Prupe.6G119200' => 'ppe', 'Psat0s1945g0080' => 'psa', 'Psat0s4167g0040' => 'psa', 'Psat1g185800' => 'psa', 'Psat4g006440' => 'psa', 'Psat4g006480' => 'psa', 'Psat4g168120' => 'psa', 'Psat5g255680' => 'psa', 'Psat5g261760' => 'psa', 'Psat7g222120' => 'psa', 'PSO063G7252' => 'pso', 'PSO170G4778' => 'pso', 'PSO210G2249' => 'pso', 'PSO339G2411' => 'pso', 'PSO339G2457' => 'pso', 'PSO339G2854' => 'pso', 'PSO339G4288' => 'pso', 'PSO339G4615' => 'pso', 'PSO384G2796' => 'pso', 'PSO384G2940' => 'pso', 'PSO384G4227' => 'pso', 'PSO478G1425' => 'pso', 'PSO541G3863' => 'pso', 'PSO675G0507' => 'pso', 'PSO782G0338' => 'pso', 'PSO832G0644' => 'pso', 'QL01p013664' => 'qlo', 'QL01p036598' => 'qlo', 'QL05p072984' => 'qlo', 'QL08p005768' => 'qlo', 'QL08p032743' => 'qlo', 'QL93p0073_0439' => 'qlo', 'QL93p0073_0444' => 'qlo', 'RcHm_v2.0_Chr5g0002851' => 'rch', 'RcHm_v2.0_Chr5g0055201' => 'rch', 'RcHm_v2.0_Chr5g0061191' => 'rch', 'RcHm_v2.0_Chr7g0203231' => 'rch', 'Rhsim01G0208100' => 'rsi', 'Rhsim01G0208200' => 'rsi', 'Rhsim02G0106500' => 'rsi', 'Rhsim03G0107900' => 'rsi', 'Rhsim06G0163400' => 'rsi', 'Rhsim13G0105200' => 'rsi', 'Sabra04G0006300' => 'sbr', 'Sabra04G0127000' => 'sbr', 'Sabra08G0148700' => 'sbr', 'Sabra09G0117400' => 'sbr', 'SalBow1G3326' => 'sbo', 'SalBow3G3228' => 'sbo', 'SalBow6G1634' => 'sbo', 'SalBow6G3603' => 'sbo', 'SalBow6G5266' => 'sbo', 'SalBow7G2265' => 'sbo', 'SalBow8G0850' => 'sbo', 'SalBow8G2592' => 'sbo', 'Sc05g0009240' => 'sci', 'Sc12g0002300' => 'sci', 'Sc21g0000100' => 'sci', 'Sc21g0004720' => 'sci', 'Sed0002949' => 'sed', 'Sed0004114' => 'sed', 'Sed0004306' => 'sed', 'Sed0006172' => 'sed', 'Sed0008413' => 'sed', 'Sed0013809' => 'sed', 'Sed0019556' => 'sed', 'SEGI_03570' => 'sgi', 'SEGI_07859' => 'sgi', 'SEGI_15042' => 'sgi', 'SEGI_16263' => 'sgi', 'SEGI_16552' => 'sgi', 'SEGI_24331' => 'sgi', 'SEGI_27316' => 'sgi', 'SEGI_29521' => 'sgi', 'SEGI_41342' => 'sgi', 'SGA_v2.0_scaffold27G11617' => 'sas', 'SGA_v2.0_scaffold316G48428' => 'sas', 'SGA_v2.0_scaffold49G18261' => 'sas', 'SGA_v2.0_scaffold7G03831' => 'sas', 'SGA_v2.0_scaffold93G28359' => 'sas', 'SHI02210' => 'shi', 'SHI06028' => 'shi', 'SHI06321' => 'shi', 'SMO111G0012' => 'smo', 'SMO228G0080' => 'smo', 'SMO356G0756' => 'smo', 'Solyc02g080620.3' => 'sly', 'Solyc06g074530.1' => 'sly', 'Solyc11g066890.1' => 'sly', 'Solyc11g072520.3' => 'sly', 'Sopen02g025330' => 'spe', 'Sopen06g031000' => 'spe', 'Sopen09g008240' => 'spe', 'Sopen09g025210' => 'spe', 'Sopen11g026600' => 'spe', 'Sopen11g030170' => 'spe', 'Sp1g10420' => 'spa', 'Sp3g06570' => 'spa', 'Sp4g10660' => 'spa', 'Sp5g16460' => 'spa', 'Sp6g22710' => 'spa', 'TAR365G0112' => 'tar', 'TAR369G0717' => 'tar', 'TAR374G0976' => 'tar', 'TAR623G1128' => 'tar', 'TAR626G1937' => 'tar', 'TAR627G0123' => 'tar', 'TAR628G0305' => 'tar', 'TAR636G1176' => 'tar', 'TAR636G2442' => 'tar', 'THA.LOC104800556' => 'tha', 'THA.LOC104809501' => 'tha', 'THA.LOC104815126' => 'tha', 'THA.LOC104815732' => 'tha', 'THA.LOC104823528' => 'tha', 'Thecc.02G365600' => 'tca', 'Thecc.06G222300' => 'tca', 'Thecc.09G261800' => 'tca', 'Thecc.09G291400' => 'tca', 'Thhalv10003028m.g' => 'esa', 'Thhalv10007886m.g' => 'esa', 'Thhalv10016085m.g' => 'esa', 'Thhalv10016681m.g' => 'esa', 'Thhalv10020951m.g' => 'esa', 'TPR.G15598' => 'tpr', 'TPR.G29305' => 'tpr', 'TPR.G32395' => 'tpr', 'TPR.G36998' => 'tpr', 'TPR.G4227' => 'tpr', 'TWI18G1433' => 'twi', 'TWI31G0755' => 'twi', 'TWI38G0912' => 'twi', 'TWI75G1097' => 'twi', 'TWI75G1619' => 'twi', 'TWI79G1336' => 'twi', 'unitig_0.g943' => 'ugi', 'unitig_0.g944' => 'ugi', 'unitig_22.g6646' => 'ugi', 'unitig_37.g12681' => 'ugi', 'unitig_8.g3290' => 'ugi', 'vmacro03278' => 'vma', 'vmacro12197' => 'vma', 'vmacro14478' => 'vma', 'vmacro15787' => 'vma', 'vmacro15789' => 'vma', 'vmacro15790' => 'vma', 'vmacro15806' => 'vma', 'vmacro22907' => 'vma', 'vmacro22908' => 'vma', 'vmacro22909' => 'vma', 'vmacro23108' => 'vma', 'VMungo0540G0540' => 'vmu', 'VMungo0540G2468' => 'vmu', 'VMungo1080G0390' => 'vmu', 'VMungo1080G1165' => 'vmu', 'VMungo1127G0170' => 'vmu', 'VMungo1127G2099' => 'vmu', 'VMungo1215G3013' => 'vmu', 'Zm00001eb013110' => 'zma', 'Zm00001eb084260' => 'zma', 'Zm00001eb096110' => 'zma', 'Zm00001eb217510' => 'zma', 'Zm00001eb322550' => 'zma', 'Zm00001eb390770' => 'zma', 'Zm00001eb397170' => 'zma', 'Zm00001eb404610' => 'zma', 'Zm00001eb421790' => 'zma' ) $gf_id = 'HOM05D000911' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000911' ) $data_identifier = 'HOM05D000911' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 16, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 5, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 6, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 8, 'nnu' => (int) 16, 'oeu' => (int) 8, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 5, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 16, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421790' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000911', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27780' => 'bna', 'A03p35380' => 'bna', 'A04p21160' => 'bna', 'A05p40570' => 'bna', 'A06p26900' => 'bna', 'A08p33230' => 'bna', 'A09p65960' => 'bna', 'A10p18290' => 'bna', 'Aa31LG1G12990' => 'aar', 'Aa31LG1G2980' => 'aar', 'Aa31LG4G14320' => 'aar', 'Aa31LG7G11800' => 'aar', 'Aa31sc36G50' => 'aar', 'Aa31sc36G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3721' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5459' => 'aag', 'Actinidia03028' => 'ach', 'Actinidia03753' => 'ach', 'Actinidia04187' => 'ach', 'Actinidia05509' => 'ach', 'Actinidia24180' => 'ach', 'Actinidia26906' => 'ach', 'Actinidia37097' => 'ach', 'Actinidia38249' => 'ach', 'Ah.01g003470' => 'amhyb', 'Ah.01g004580' => 'amhyb', 'Ah.01g014850' => 'amhyb', 'Ah.01g016830' => 'amhyb', 'Ah.14g088000' => 'amhyb', 'AL1G22980' => 'aly', 'AL3G18990' => 'aly', 'AL4G22440' => 'aly', 'AL4G33180' => 'aly', 'AL5G22920' => 'aly', 'AL6G33660' => 'aly', 'AL8G20720' => 'aly', 'Aqoxy1G00935' => 'aox', 'Aqoxy1G02094' => 'aox', 'Aqoxy2G01239' => 'aox', 'Aqoxy4G01870' => 'aox', 'Aqoxy7G00450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.36ZVTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71EM27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5D6C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH3WRE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3NCM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RIM768' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YB5YRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z36GDV' => 'arhy', 'AT1G08250' => 'ath', 'AT1G11790' => 'ath', 'AT2G27820' => 'ath', 'AT3G07630' => 'ath', 'AT3G44720' => 'ath', 'AT5G22630' => 'ath', 'ATR0693G304' => 'atr', 'ATR0794G109' => 'atr', 'ATR0820G120' => 'atr', 'ATR1159G064' => 'atr', 'Atru.chr10.2239' => 'acertr', 'Atru.chr3.3371' => 'acertr', 'Atru.chr6.3202' => 'acertr', 'AUR62006499' => 'cqu', 'AUR62012718' => 'cqu', 'AUR62021938' => 'cqu', 'AUR62023932' => 'cqu', 'AUR62025034' => 'cqu', 'AUR62025035' => 'cqu', 'AUR62038307' => 'cqu', 'AUR62043466' => 'cqu', 'BcaB02g10748' => 'bca', 'BcaB03g13231' => 'bca', 'BcaB03g14689' => 'bca', 'BcaB05g22716' => 'bca', 'BcaB06g28172' => 'bca', 'BcaB08g36413' => 'bca', 'BcaC01g02186' => 'bca', 'BcaC01g04272' => 'bca', 'BcaC02g08080' => 'bca', 'BcaC02g08227' => 'bca', 'BcaC03g13901' => 'bca', 'BcaC04g19593' => 'bca', 'BcaC04g20874' => 'bca', 'BcaC05g29557' => 'bca', 'BcaC06g35505' => 'bca', 'BcaC07g41954' => 'bca', 'BcaC07g41955' => 'bca', 'BcaC07g41956' => 'bca', 'BcaC07g42519' => 'bca', 'BcaC07g42520' => 'bca', 'BcaC07g42523' => 'bca', 'BcaC07g42524' => 'bca', 'BcaC07g42525' => 'bca', 'BcaC08g47480' => 'bca', 'BcaC08g47481' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00530' => 'bna', 'BolC2t07178H' => 'bol', 'BolC3t16567H' => 'bol', 'BolC4t27234H' => 'bol', 'BolC5t29728H' => 'bol', 'BolC5t34622H' => 'bol', 'BolC6t40321H' => 'bol', 'BolC7t42028H' => 'bol', 'BolC8t49125H' => 'bol', 'BolC8t52538H' => 'bol', 'BolC8t52539H' => 'bol', 'BolC9t56681H' => 'bol', 'BolC9t58266H' => 'bol', 'BolSC21t60294H' => 'bol', 'BraA02t05670Z' => 'bra', 'BraA03t12716Z' => 'bra', 'BraA04t17685Z' => 'bra', 'BraA05t22788Z' => 'bra', 'BraA06t24032Z' => 'bra', 'BraA06t25625Z' => 'bra', 'BraA07t27930Z' => 'bra', 'BraA08t35242Z' => 'bra', 'BraA09t38609Z' => 'bra', 'BraA10t43905Z' => 'bra', 'C02p11060' => 'bna', 'C03p42990' => 'bna', 'C03p67310' => 'bna', 'C04p56990' => 'bna', 'C04p58660' => 'bna', 'C05p09890' => 'bna', 'C05p59680' => 'bna', 'C06p19830' => 'bna', 'C06p53040' => 'bna', 'C07p15230' => 'bna', 'C08p50070' => 'bna', 'C08p50090' => 'bna', 'C09p38330' => 'bna', 'C09p53940' => 'bna', 'CAN.G1014.1' => 'can', 'CAN.G644.30' => 'can', 'CAN.G84.47' => 'can', 'CAN.G919.8' => 'can', 'CANSAT54G0113' => 'cansat', 'CANSAT54G1286' => 'cansat', 'CANSAT64G1020' => 'cansat', 'CARHR008080' => 'chi', 'CARHR008090' => 'chi', 'CARHR012130' => 'chi', 'CARHR038390' => 'chi', 'CARHR082330' => 'chi', 'CARHR120520' => 'chi', 'CARHR151470' => 'chi', 'CARHR190950' => 'chi', 'Carub.0001s0760' => 'cru', 'Carub.0001s1146' => 'cru', 'Carub.0003s0721' => 'cru', 'Carub.0004s0858' => 'cru', 'Carub.0005s1040' => 'cru', 'Carub.0006s2035' => 'cru', 'Carub.0015s0005' => 'cru', 'Ca_01607_v3' => 'car', 'Ca_01677_v3' => 'car', 'Ca_06087_v3' => 'car', 'Ca_19238_v3' => 'car', 'Ca_19373_v3' => 'car', 'Ca_21079_v3' => 'car', 'CBR_g54016' => 'cbr', 'CBR_g54018' => 'cbr', 'CBR_g54020' => 'cbr', 'Cc01_g09780' => 'ccan', 'Cc01_g11680' => 'ccan', 'Cc02_g15610' => 'ccan', 'Cc05_g04350' => 'ccan', 'Cc09_g01580' => 'ccan', 'CDE01G0795' => 'cde', 'CDE02G2024' => 'cde', 'CDE02G2260' => 'cde', 'CDE02G4561' => 'cde', 'CDE05G2733' => 'cde', 'CDE05G3422' => 'cde', 'CDE06G2003' => 'cde', 'CDE08G0576' => 'cde', 'CDE09G0048' => 'cde', 'CDE11G0805' => 'cde', 'Cfa003644' => 'cfa', 'Cfa006290' => 'cfa', 'Cfa010080' => 'cfa', 'Cfa011376' => 'cfa', 'Cfa011576' => 'cfa', 'Cfa011577' => 'cfa', 'Cfa014389' => 'cfa', 'Ciclev10006044m.g' => 'ccl', 'Ciclev10006954m.g' => 'ccl', 'Ciclev10015131m.g' => 'ccl', 'Ciclev10015580m.g' => 'ccl', 'Ciclev10028359m.g' => 'ccl', 'Ciclev10028573m.g' => 'ccl', 'CiPaw.03G159300' => 'cil', 'CiPaw.04G115100' => 'cil', 'CiPaw.09G092800' => 'cil', 'CiPaw.10G071800' => 'cil', 'CiPaw.13G105800' => 'cil', 'CiPaw.13G141000' => 'cil', 'CiPaw.14G103400' => 'cil', 'ClCG01G012700' => 'cla', 'ClCG01G012720' => 'cla', 'ClCG01G021920' => 'cla', 'ClCG02G008870' => 'cla', 'ClCG02G020840' => 'cla', 'ClCG02G021930' => 'cla', 'COL.COLO4_19302' => 'col', 'COL.COLO4_25262' => 'col', 'COL.COLO4_31788' => 'col', 'Cpa.g.c34684' => 'cpa', 'Cpa.g.c36520.1' => 'cpa', 'Cpa.g.c45626' => 'cpa', 'Cpa.g.sc121.17' => 'cpa', 'Cpa.g.sc13.22' => 'cpa', 'Cpa.g.sc87.88' => 'cpa', 'Cre06.g261800' => 'cre', 'CsaV3_1G014500' => 'csa', 'CsaV3_1G014510' => 'csa', 'CsaV3_2G034880' => 'csa', 'CsaV3_6G014760' => 'csa', 'CsaV3_6G021500' => 'csa', 'CsaV3_6G048980' => 'csa', 'CSS0002511' => 'camsi', 'CSS0007556' => 'camsi', 'CSS0008532' => 'camsi', 'CSS0009709' => 'camsi', 'CSS0010486' => 'camsi', 'CSS0016768' => 'camsi', 'CSS0023512' => 'camsi', 'CSS0025341' => 'camsi', 'CSS0027999' => 'camsi', 'CSS0028944' => 'camsi', 'CSS0032292' => 'camsi', 'CSS0032464' => 'camsi', 'CSS0037153' => 'camsi', 'CSS0039256' => 'camsi', 'CSS0048392' => 'camsi', 'CSS0050458' => 'camsi', 'DCAR_004224' => 'dca', 'DCAR_006147' => 'dca', 'DCAR_006465' => 'dca', 'DCAR_008159' => 'dca', 'DCAR_012164' => 'dca', 'DCAR_019764' => 'dca', 'Dinv05418' => 'din', 'Dinv10839' => 'din', 'Dinv12521' => 'din', 'Dinv13900' => 'din', 'Dinv29426' => 'din', 'Duzib150G0263' => 'dzi', 'Duzib168G1178' => 'dzi', 'Duzib168G1924' => 'dzi', 'Duzib170G0299' => 'dzi', 'Duzib170G0813' => 'dzi', 'Duzib235G1128' => 'dzi', 'Duzib248G1060' => 'dzi', 'ECA232G1910' => 'eca', 'ECA233G4621' => 'eca', 'ECA238G1216' => 'eca', 'ECA238G1784' => 'eca', 'ECA248G1242' => 'eca', 'EL10Ac8g20071' => 'bvu', 'EL10Ac9g21086' => 'bvu', 'EL10Ac9g22407' => 'bvu', 'EL10Ac9g22412' => 'bvu', 'Eucgr.A01119' => 'egr', 'Eucgr.E04043' => 'egr', 'Eucgr.J00428' => 'egr', 'Eucgr.J00958' => 'egr', 'FAN11G3091' => 'fan', 'FAN11G3651' => 'fan', 'FAN16G2566' => 'fan', 'FAN21G3155' => 'fan', 'FAN21G3400' => 'fan', 'FAN21G3543' => 'fan', 'FAN25G0234' => 'fan', 'FAN25G1422' => 'fan', 'FAN25G3392' => 'fan', 'FvH4_3g01940' => 'fve', 'FvH4_3g29870' => 'fve', 'FvH4_3g33680' => 'fve', 'Glyma.09G004200' => 'gma', 'Glyma.11G151288' => 'gma', 'Glyma.11G189100' => 'gma', 'Glyma.12G072500' => 'gma', 'Glyma.12G085500' => 'gma', 'Glyma.12G181800' => 'gma', 'Glyma.12G193000' => 'gma', 'Glyma.13G309300' => 'gma', 'Glyma.13G319000' => 'gma', 'Glyma.17G012600' => 'gma', 'Gohir.A06G148600' => 'ghi', 'Gohir.A07G115800' => 'ghi', 'Gohir.A08G003600' => 'ghi', 'Gohir.A09G093300' => 'ghi', 'Gohir.A09G105400' => 'ghi', 'Gohir.A09G105500' => 'ghi', 'Gohir.D06G154600' => 'ghi', 'Gohir.D07G120200' => 'ghi', 'Gohir.D08G013900' => 'ghi', 'Gohir.D09G093100' => 'ghi', 'Gohir.D09G102200' => 'ghi', 'Gohir.D09G102300' => 'ghi', 'Gorai.001G129400' => 'gra', 'Gorai.004G008200' => 'gra', 'Gorai.006G109800' => 'gra', 'Gorai.006G119500' => 'gra', 'Gorai.006G121300' => 'gra', 'Gorai.010G180700' => 'gra', 'GSVIVG01012716001' => 'vvi', 'GSVIVG01025118001' => 'vvi', 'GSVIVG01030439001' => 'vvi', 'GSVIVG01031397001' => 'vvi', 'HanXRQChr01g0004201' => 'han', 'HanXRQChr02g0054941' => 'han', 'HanXRQChr05g0141811' => 'han', 'HanXRQChr07g0197751' => 'han', 'HanXRQChr11g0346691' => 'han', 'HanXRQChr13g0396971' => 'han', 'HanXRQChr14g0432951' => 'han', 'HanXRQChr14g0452001' => 'han', 'HanXRQChr15g0496681' => 'han', 'HanXRQChr17g0557491' => 'han', 'HanXRQChr17g0557501' => 'han', 'Haze_06809' => 'cav', 'Haze_12852' => 'cav', 'Haze_15850' => 'cav', 'Haze_23446' => 'cav', 'Haze_23942' => 'cav', 'Haze_23943' => 'cav', 'Hma1.2p1_0091F.1_g046450' => 'hma', 'Hma1.2p1_0128F.1_g059910' => 'hma', 'Hma1.2p1_0249F.1_g102260' => 'hma', 'Hma1.2p1_0453F.1_g156190' => 'hma', 'Hma1.2p1_0695F.1_g204380' => 'hma', 'Hma1.2p1_0749F.1_g212650' => 'hma', 'Hma1.2p1_2156F.1_g315420' => 'hma', 'Hma1.2p1_2686F.1_g326940' => 'hma', 'HPP92_006428' => 'vpl', 'HPP92_012069' => 'vpl', 'HPP92_014129' => 'vpl', 'HPP92_014133' => 'vpl', 'HPP92_017315' => 'vpl', 'HPP92_026445' => 'vpl', 'HPP92_026446' => 'vpl', 'Hund00774' => 'sun', 'Hund07682' => 'sun', 'Hund21413' => 'sun', 'Hund23462' => 'sun', 'Hund23463' => 'sun', 'Lalb_Chr03g0027911' => 'lal', 'Lalb_Chr13g0304271' => 'lal', 'Lalb_Chr19g0137471' => 'lal', 'Lalb_Chr22g0350651' => 'lal', 'Lalb_Chr24g0395151' => 'lal', 'Lj1A1231T40' => 'lonja', 'Lj1A221T48' => 'lonja', 'Lj1C924T12' => 'lonja', 'Lj2C993G6' => 'lonja', 'Lj3g0005790' => 'lja', 'Lj3g0015432' => 'lja', 'Lj3g0017722' => 'lja', 'Lj3g0018497' => 'lja', 'Lj4g0025071' => 'lja', 'Lsat_1_v5_gn_1_129680' => 'lsa', 'Lsat_1_v5_gn_2_25321' => 'lsa', 'Lsat_1_v5_gn_2_95461' => 'lsa', 'Lsat_1_v5_gn_4_159620' => 'lsa', 'Lsat_1_v5_gn_6_41301' => 'lsa', 'Lsat_1_v5_gn_6_74660' => 'lsa', 'Lsat_1_v5_gn_7_11520' => 'lsa', 'Lsat_1_v5_gn_9_67680' => 'lsa', 'Manes.04G008300' => 'mes', 'Manes.04G008400' => 'mes', 'Manes.04G026500' => 'mes', 'Manes.10G135300' => 'mes', 'Manes.11G157300' => 'mes', 'Manes.12G074000' => 'mes', 'Manes.16G006200' => 'mes', 'Manes.17G026400' => 'mes', 'Mapoly0024s0086' => 'mpo', 'Mapoly0024s0087' => 'mpo', 'Mapoly0071s0057' => 'mpo', 'Mapoly0204s0012' => 'mpo', 'MBI04_g37681_MAGBIO' => 'mbi', 'MBI05_g17779_MAGBIO' => 'mbi', 'MBI12_g31184_MAGBIO' => 'mbi', 'MBI17_g11083_MAGBIO' => 'mbi', 'MBI18_g03883_MAGBIO' => 'mbi', 'MBI18_g28940_MAGBIO' => 'mbi', 'MCO01G690' => 'mco', 'MD03G1109900' => 'mdo', 'MD03G1134800' => 'mdo', 'MD05G1348000' => 'mdo', 'MD10G1322400' => 'mdo', 'MD11G1123300' => 'mdo', 'MD11G1157600' => 'mdo', 'Medtr2g084875' => 'mtr', 'Medtr2g088130' => 'mtr', 'Medtr4g055310' => 'mtr', 'Medtr4g061070' => 'mtr', 'Medtr4g132250' => 'mtr', 'MELO3C004795.2' => 'cme', 'MELO3C004797.2' => 'cme', 'MELO3C007396.2' => 'cme', 'MELO3C019277.2' => 'cme', 'MELO3C021449.2' => 'cme', 'MELO3C025736.2' => 'cme', 'Migut.D02175' => 'egut', 'Migut.H01573' => 'egut', 'Migut.M01327' => 'egut', 'Migut.N02513' => 'egut', 'MSTRG.14638' => 'ama', 'MSTRG.18632' => 'ama', 'MSTRG.7203' => 'ama', 'Nitab4.5_0000533g0140' => 'nta', 'Nitab4.5_0000888g0150' => 'nta', 'Nitab4.5_0001453g0040' => 'nta', 'Nitab4.5_0002827g0090' => 'nta', 'Nitab4.5_0003082g0040' => 'nta', 'Nitab4.5_0007799g0040' => 'nta', 'Nitab4.5_0008983g0010' => 'nta', 'Nitab4.5_0009017g0020' => 'nta', 'Nn1g02132' => 'nnu', 'Nn1g03492' => 'nnu', 'Nn1g03493' => 'nnu', 'Nn1g03494' => 'nnu', 'Nn1g07164' => 'nnu', 'Nn1g07291' => 'nnu', 'Nn2g10655' => 'nnu', 'Nn2g11652' => 'nnu', 'Nn2g14008' => 'nnu', 'Nn3g17476' => 'nnu', 'Nn3g17477' => 'nnu', 'Nn4g22370' => 'nnu', 'Nn4g25255' => 'nnu', 'Nn5g27755' => 'nnu', 'Nn6g34260' => 'nnu', 'Nn6g35041' => 'nnu', 'Oeu005924.1' => 'oeu', 'Oeu008383.1' => 'oeu', 'Oeu014928.1' => 'oeu', 'Oeu019889.1' => 'oeu', 'Oeu022271.1' => 'oeu', 'Oeu025271.1' => 'oeu', 'Oeu036302.1' => 'oeu', 'Oeu044100.1' => 'oeu', 'Os01g0528300' => 'osa', 'Os03g0286200' => 'osa', 'Os04g0406600' => 'osa', 'Os07g0512000' => 'osa', 'Os07g0694600' => 'osa', 'Os08g0411000' => 'osa', 'Os09g0565700' => 'osa', 'Os09g0566050' => 'osa', 'Os10g0523700' => 'osa', 'Peaxi162Scf00002g00514' => 'pax', 'Peaxi162Scf00047g01817' => 'pax', 'Peaxi162Scf00114g00001' => 'pax', 'Peaxi162Scf00147g00613' => 'pax', 'Peaxi162Scf00389g00425' => 'pax', 'PGR042G1139' => 'pgr', 'PGR042G3273' => 'pgr', 'PGR102G2180' => 'pgr', 'PGR119G0234' => 'pgr', 'PGR119G0668' => 'pgr', 'PGSC0003DMG400007122' => 'stu', 'PGSC0003DMG400016478' => 'stu', 'PGSC0003DMG400025374' => 'stu', 'PGSC0003DMG400026536' => 'stu', 'Phvul.003G079600' => 'pvu', 'Phvul.005G115600' => 'pvu', 'Phvul.005G127100' => 'pvu', 'Phvul.006G149500' => 'pvu', 'Phvul.006G149600' => 'pvu', 'Phvul.011G071800' => 'pvu', 'Phvul.011G090400' => 'pvu', 'Potri.004G013400' => 'ptr', 'Potri.004G188100' => 'ptr', 'Potri.008G195500' => 'ptr', 'Potri.009G148800' => 'ptr', 'Potri.011G004700' => 'ptr', 'Pp3c17_22810' => 'ppa', 'Pp3c18_4480' => 'ppa', 'Pp3c19_13030' => 'ppa', 'Pp3c1_33620' => 'ppa', 'Pp3c2_9380' => 'ppa', 'PRCOL_00001023' => 'pco', 'Prupe.3G216300' => 'ppe', 'Prupe.4G019500' => 'ppe', 'Prupe.6G092500' => 'ppe', 'Prupe.6G119200' => 'ppe', 'Psat0s1945g0080' => 'psa', 'Psat0s4167g0040' => 'psa', 'Psat1g185800' => 'psa', 'Psat4g006440' => 'psa', 'Psat4g006480' => 'psa', 'Psat4g168120' => 'psa', 'Psat5g255680' => 'psa', 'Psat5g261760' => 'psa', 'Psat7g222120' => 'psa', 'PSO063G7252' => 'pso', 'PSO170G4778' => 'pso', 'PSO210G2249' => 'pso', 'PSO339G2411' => 'pso', 'PSO339G2457' => 'pso', 'PSO339G2854' => 'pso', 'PSO339G4288' => 'pso', 'PSO339G4615' => 'pso', 'PSO384G2796' => 'pso', 'PSO384G2940' => 'pso', 'PSO384G4227' => 'pso', 'PSO478G1425' => 'pso', 'PSO541G3863' => 'pso', 'PSO675G0507' => 'pso', 'PSO782G0338' => 'pso', 'PSO832G0644' => 'pso', 'QL01p013664' => 'qlo', 'QL01p036598' => 'qlo', 'QL05p072984' => 'qlo', 'QL08p005768' => 'qlo', 'QL08p032743' => 'qlo', 'QL93p0073_0439' => 'qlo', 'QL93p0073_0444' => 'qlo', 'RcHm_v2.0_Chr5g0002851' => 'rch', 'RcHm_v2.0_Chr5g0055201' => 'rch', 'RcHm_v2.0_Chr5g0061191' => 'rch', 'RcHm_v2.0_Chr7g0203231' => 'rch', 'Rhsim01G0208100' => 'rsi', 'Rhsim01G0208200' => 'rsi', 'Rhsim02G0106500' => 'rsi', 'Rhsim03G0107900' => 'rsi', 'Rhsim06G0163400' => 'rsi', 'Rhsim13G0105200' => 'rsi', 'Sabra04G0006300' => 'sbr', 'Sabra04G0127000' => 'sbr', 'Sabra08G0148700' => 'sbr', 'Sabra09G0117400' => 'sbr', 'SalBow1G3326' => 'sbo', 'SalBow3G3228' => 'sbo', 'SalBow6G1634' => 'sbo', 'SalBow6G3603' => 'sbo', 'SalBow6G5266' => 'sbo', 'SalBow7G2265' => 'sbo', 'SalBow8G0850' => 'sbo', 'SalBow8G2592' => 'sbo', 'Sc05g0009240' => 'sci', 'Sc12g0002300' => 'sci', 'Sc21g0000100' => 'sci', 'Sc21g0004720' => 'sci', 'Sed0002949' => 'sed', 'Sed0004114' => 'sed', 'Sed0004306' => 'sed', 'Sed0006172' => 'sed', 'Sed0008413' => 'sed', 'Sed0013809' => 'sed', 'Sed0019556' => 'sed', 'SEGI_03570' => 'sgi', 'SEGI_07859' => 'sgi', 'SEGI_15042' => 'sgi', 'SEGI_16263' => 'sgi', 'SEGI_16552' => 'sgi', 'SEGI_24331' => 'sgi', 'SEGI_27316' => 'sgi', 'SEGI_29521' => 'sgi', 'SEGI_41342' => 'sgi', 'SGA_v2.0_scaffold27G11617' => 'sas', 'SGA_v2.0_scaffold316G48428' => 'sas', 'SGA_v2.0_scaffold49G18261' => 'sas', 'SGA_v2.0_scaffold7G03831' => 'sas', 'SGA_v2.0_scaffold93G28359' => 'sas', 'SHI02210' => 'shi', 'SHI06028' => 'shi', 'SHI06321' => 'shi', 'SMO111G0012' => 'smo', 'SMO228G0080' => 'smo', 'SMO356G0756' => 'smo', 'Solyc02g080620.3' => 'sly', 'Solyc06g074530.1' => 'sly', 'Solyc11g066890.1' => 'sly', 'Solyc11g072520.3' => 'sly', 'Sopen02g025330' => 'spe', 'Sopen06g031000' => 'spe', 'Sopen09g008240' => 'spe', 'Sopen09g025210' => 'spe', 'Sopen11g026600' => 'spe', 'Sopen11g030170' => 'spe', 'Sp1g10420' => 'spa', 'Sp3g06570' => 'spa', 'Sp4g10660' => 'spa', 'Sp5g16460' => 'spa', 'Sp6g22710' => 'spa', 'TAR365G0112' => 'tar', 'TAR369G0717' => 'tar', 'TAR374G0976' => 'tar', 'TAR623G1128' => 'tar', 'TAR626G1937' => 'tar', 'TAR627G0123' => 'tar', 'TAR628G0305' => 'tar', 'TAR636G1176' => 'tar', 'TAR636G2442' => 'tar', 'THA.LOC104800556' => 'tha', 'THA.LOC104809501' => 'tha', 'THA.LOC104815126' => 'tha', 'THA.LOC104815732' => 'tha', 'THA.LOC104823528' => 'tha', 'Thecc.02G365600' => 'tca', 'Thecc.06G222300' => 'tca', 'Thecc.09G261800' => 'tca', 'Thecc.09G291400' => 'tca', 'Thhalv10003028m.g' => 'esa', 'Thhalv10007886m.g' => 'esa', 'Thhalv10016085m.g' => 'esa', 'Thhalv10016681m.g' => 'esa', 'Thhalv10020951m.g' => 'esa', 'TPR.G15598' => 'tpr', 'TPR.G29305' => 'tpr', 'TPR.G32395' => 'tpr', 'TPR.G36998' => 'tpr', 'TPR.G4227' => 'tpr', 'TWI18G1433' => 'twi', 'TWI31G0755' => 'twi', 'TWI38G0912' => 'twi', 'TWI75G1097' => 'twi', 'TWI75G1619' => 'twi', 'TWI79G1336' => 'twi', 'unitig_0.g943' => 'ugi', 'unitig_0.g944' => 'ugi', 'unitig_22.g6646' => 'ugi', 'unitig_37.g12681' => 'ugi', 'unitig_8.g3290' => 'ugi', 'vmacro03278' => 'vma', 'vmacro12197' => 'vma', 'vmacro14478' => 'vma', 'vmacro15787' => 'vma', 'vmacro15789' => 'vma', 'vmacro15790' => 'vma', 'vmacro15806' => 'vma', 'vmacro22907' => 'vma', 'vmacro22908' => 'vma', 'vmacro22909' => 'vma', 'vmacro23108' => 'vma', 'VMungo0540G0540' => 'vmu', 'VMungo0540G2468' => 'vmu', 'VMungo1080G0390' => 'vmu', 'VMungo1080G1165' => 'vmu', 'VMungo1127G0170' => 'vmu', 'VMungo1127G2099' => 'vmu', 'VMungo1215G3013' => 'vmu', 'Zm00001eb013110' => 'zma', 'Zm00001eb084260' => 'zma', 'Zm00001eb096110' => 'zma', 'Zm00001eb217510' => 'zma', 'Zm00001eb322550' => 'zma', 'Zm00001eb390770' => 'zma', 'Zm00001eb397170' => 'zma', 'Zm00001eb404610' => 'zma', 'Zm00001eb421790' => 'zma' ), 'gf_id' => 'HOM05D000911', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000911' ), 'data_identifier' => 'HOM05D000911', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000911', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27780' => 'bna', 'A03p35380' => 'bna', 'A04p21160' => 'bna', 'A05p40570' => 'bna', 'A06p26900' => 'bna', 'A08p33230' => 'bna', 'A09p65960' => 'bna', 'A10p18290' => 'bna', 'Aa31LG1G12990' => 'aar', 'Aa31LG1G2980' => 'aar', 'Aa31LG4G14320' => 'aar', 'Aa31LG7G11800' => 'aar', 'Aa31sc36G50' => 'aar', 'Aa31sc36G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3721' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5459' => 'aag', 'Actinidia03028' => 'ach', 'Actinidia03753' => 'ach', 'Actinidia04187' => 'ach', 'Actinidia05509' => 'ach', 'Actinidia24180' => 'ach', 'Actinidia26906' => 'ach', 'Actinidia37097' => 'ach', 'Actinidia38249' => 'ach', 'Ah.01g003470' => 'amhyb', 'Ah.01g004580' => 'amhyb', 'Ah.01g014850' => 'amhyb', 'Ah.01g016830' => 'amhyb', 'Ah.14g088000' => 'amhyb', 'AL1G22980' => 'aly', 'AL3G18990' => 'aly', 'AL4G22440' => 'aly', 'AL4G33180' => 'aly', 'AL5G22920' => 'aly', 'AL6G33660' => 'aly', 'AL8G20720' => 'aly', 'Aqoxy1G00935' => 'aox', 'Aqoxy1G02094' => 'aox', 'Aqoxy2G01239' => 'aox', 'Aqoxy4G01870' => 'aox', 'Aqoxy7G00450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.36ZVTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71EM27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5D6C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH3WRE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3NCM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RIM768' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YB5YRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z36GDV' => 'arhy', 'AT1G08250' => 'ath', 'AT1G11790' => 'ath', 'AT2G27820' => 'ath', 'AT3G07630' => 'ath', 'AT3G44720' => 'ath', 'AT5G22630' => 'ath', 'ATR0693G304' => 'atr', 'ATR0794G109' => 'atr', 'ATR0820G120' => 'atr', 'ATR1159G064' => 'atr', 'Atru.chr10.2239' => 'acertr', 'Atru.chr3.3371' => 'acertr', 'Atru.chr6.3202' => 'acertr', 'AUR62006499' => 'cqu', 'AUR62012718' => 'cqu', 'AUR62021938' => 'cqu', 'AUR62023932' => 'cqu', 'AUR62025034' => 'cqu', 'AUR62025035' => 'cqu', 'AUR62038307' => 'cqu', 'AUR62043466' => 'cqu', 'BcaB02g10748' => 'bca', 'BcaB03g13231' => 'bca', 'BcaB03g14689' => 'bca', 'BcaB05g22716' => 'bca', 'BcaB06g28172' => 'bca', 'BcaB08g36413' => 'bca', 'BcaC01g02186' => 'bca', 'BcaC01g04272' => 'bca', 'BcaC02g08080' => 'bca', 'BcaC02g08227' => 'bca', 'BcaC03g13901' => 'bca', 'BcaC04g19593' => 'bca', 'BcaC04g20874' => 'bca', 'BcaC05g29557' => 'bca', 'BcaC06g35505' => 'bca', 'BcaC07g41954' => 'bca', 'BcaC07g41955' => 'bca', 'BcaC07g41956' => 'bca', 'BcaC07g42519' => 'bca', 'BcaC07g42520' => 'bca', 'BcaC07g42523' => 'bca', 'BcaC07g42524' => 'bca', 'BcaC07g42525' => 'bca', 'BcaC08g47480' => 'bca', 'BcaC08g47481' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00530' => 'bna', 'BolC2t07178H' => 'bol', 'BolC3t16567H' => 'bol', 'BolC4t27234H' => 'bol', 'BolC5t29728H' => 'bol', 'BolC5t34622H' => 'bol', 'BolC6t40321H' => 'bol', 'BolC7t42028H' => 'bol', 'BolC8t49125H' => 'bol', 'BolC8t52538H' => 'bol', 'BolC8t52539H' => 'bol', 'BolC9t56681H' => 'bol', 'BolC9t58266H' => 'bol', 'BolSC21t60294H' => 'bol', 'BraA02t05670Z' => 'bra', 'BraA03t12716Z' => 'bra', 'BraA04t17685Z' => 'bra', 'BraA05t22788Z' => 'bra', 'BraA06t24032Z' => 'bra', 'BraA06t25625Z' => 'bra', 'BraA07t27930Z' => 'bra', 'BraA08t35242Z' => 'bra', 'BraA09t38609Z' => 'bra', 'BraA10t43905Z' => 'bra', 'C02p11060' => 'bna', 'C03p42990' => 'bna', 'C03p67310' => 'bna', 'C04p56990' => 'bna', 'C04p58660' => 'bna', 'C05p09890' => 'bna', 'C05p59680' => 'bna', 'C06p19830' => 'bna', 'C06p53040' => 'bna', 'C07p15230' => 'bna', 'C08p50070' => 'bna', 'C08p50090' => 'bna', 'C09p38330' => 'bna', 'C09p53940' => 'bna', 'CAN.G1014.1' => 'can', 'CAN.G644.30' => 'can', 'CAN.G84.47' => 'can', 'CAN.G919.8' => 'can', 'CANSAT54G0113' => 'cansat', 'CANSAT54G1286' => 'cansat', 'CANSAT64G1020' => 'cansat', 'CARHR008080' => 'chi', 'CARHR008090' => 'chi', 'CARHR012130' => 'chi', 'CARHR038390' => 'chi', 'CARHR082330' => 'chi', 'CARHR120520' => 'chi', 'CARHR151470' => 'chi', 'CARHR190950' => 'chi', 'Carub.0001s0760' => 'cru', 'Carub.0001s1146' => 'cru', 'Carub.0003s0721' => 'cru', 'Carub.0004s0858' => 'cru', 'Carub.0005s1040' => 'cru', 'Carub.0006s2035' => 'cru', 'Carub.0015s0005' => 'cru', 'Ca_01607_v3' => 'car', 'Ca_01677_v3' => 'car', 'Ca_06087_v3' => 'car', 'Ca_19238_v3' => 'car', 'Ca_19373_v3' => 'car', 'Ca_21079_v3' => 'car', 'CBR_g54016' => 'cbr', 'CBR_g54018' => 'cbr', 'CBR_g54020' => 'cbr', 'Cc01_g09780' => 'ccan', 'Cc01_g11680' => 'ccan', 'Cc02_g15610' => 'ccan', 'Cc05_g04350' => 'ccan', 'Cc09_g01580' => 'ccan', 'CDE01G0795' => 'cde', 'CDE02G2024' => 'cde', 'CDE02G2260' => 'cde', 'CDE02G4561' => 'cde', 'CDE05G2733' => 'cde', 'CDE05G3422' => 'cde', 'CDE06G2003' => 'cde', 'CDE08G0576' => 'cde', 'CDE09G0048' => 'cde', 'CDE11G0805' => 'cde', 'Cfa003644' => 'cfa', 'Cfa006290' => 'cfa', 'Cfa010080' => 'cfa', 'Cfa011376' => 'cfa', 'Cfa011576' => 'cfa', 'Cfa011577' => 'cfa', 'Cfa014389' => 'cfa', 'Ciclev10006044m.g' => 'ccl', 'Ciclev10006954m.g' => 'ccl', 'Ciclev10015131m.g' => 'ccl', 'Ciclev10015580m.g' => 'ccl', 'Ciclev10028359m.g' => 'ccl', 'Ciclev10028573m.g' => 'ccl', 'CiPaw.03G159300' => 'cil', 'CiPaw.04G115100' => 'cil', 'CiPaw.09G092800' => 'cil', 'CiPaw.10G071800' => 'cil', 'CiPaw.13G105800' => 'cil', 'CiPaw.13G141000' => 'cil', 'CiPaw.14G103400' => 'cil', 'ClCG01G012700' => 'cla', 'ClCG01G012720' => 'cla', 'ClCG01G021920' => 'cla', 'ClCG02G008870' => 'cla', 'ClCG02G020840' => 'cla', 'ClCG02G021930' => 'cla', 'COL.COLO4_19302' => 'col', 'COL.COLO4_25262' => 'col', 'COL.COLO4_31788' => 'col', 'Cpa.g.c34684' => 'cpa', 'Cpa.g.c36520.1' => 'cpa', 'Cpa.g.c45626' => 'cpa', 'Cpa.g.sc121.17' => 'cpa', 'Cpa.g.sc13.22' => 'cpa', 'Cpa.g.sc87.88' => 'cpa', 'Cre06.g261800' => 'cre', 'CsaV3_1G014500' => 'csa', 'CsaV3_1G014510' => 'csa', 'CsaV3_2G034880' => 'csa', 'CsaV3_6G014760' => 'csa', 'CsaV3_6G021500' => 'csa', 'CsaV3_6G048980' => 'csa', 'CSS0002511' => 'camsi', 'CSS0007556' => 'camsi', 'CSS0008532' => 'camsi', 'CSS0009709' => 'camsi', 'CSS0010486' => 'camsi', 'CSS0016768' => 'camsi', 'CSS0023512' => 'camsi', 'CSS0025341' => 'camsi', 'CSS0027999' => 'camsi', 'CSS0028944' => 'camsi', 'CSS0032292' => 'camsi', 'CSS0032464' => 'camsi', 'CSS0037153' => 'camsi', 'CSS0039256' => 'camsi', 'CSS0048392' => 'camsi', 'CSS0050458' => 'camsi', 'DCAR_004224' => 'dca', 'DCAR_006147' => 'dca', 'DCAR_006465' => 'dca', 'DCAR_008159' => 'dca', 'DCAR_012164' => 'dca', 'DCAR_019764' => 'dca', 'Dinv05418' => 'din', 'Dinv10839' => 'din', 'Dinv12521' => 'din', 'Dinv13900' => 'din', 'Dinv29426' => 'din', 'Duzib150G0263' => 'dzi', 'Duzib168G1178' => 'dzi', 'Duzib168G1924' => 'dzi', 'Duzib170G0299' => 'dzi', 'Duzib170G0813' => 'dzi', 'Duzib235G1128' => 'dzi', 'Duzib248G1060' => 'dzi', 'ECA232G1910' => 'eca', 'ECA233G4621' => 'eca', 'ECA238G1216' => 'eca', 'ECA238G1784' => 'eca', 'ECA248G1242' => 'eca', 'EL10Ac8g20071' => 'bvu', 'EL10Ac9g21086' => 'bvu', 'EL10Ac9g22407' => 'bvu', 'EL10Ac9g22412' => 'bvu', 'Eucgr.A01119' => 'egr', 'Eucgr.E04043' => 'egr', 'Eucgr.J00428' => 'egr', 'Eucgr.J00958' => 'egr', 'FAN11G3091' => 'fan', 'FAN11G3651' => 'fan', 'FAN16G2566' => 'fan', 'FAN21G3155' => 'fan', 'FAN21G3400' => 'fan', 'FAN21G3543' => 'fan', 'FAN25G0234' => 'fan', 'FAN25G1422' => 'fan', 'FAN25G3392' => 'fan', 'FvH4_3g01940' => 'fve', 'FvH4_3g29870' => 'fve', 'FvH4_3g33680' => 'fve', 'Glyma.09G004200' => 'gma', 'Glyma.11G151288' => 'gma', 'Glyma.11G189100' => 'gma', 'Glyma.12G072500' => 'gma', 'Glyma.12G085500' => 'gma', 'Glyma.12G181800' => 'gma', 'Glyma.12G193000' => 'gma', 'Glyma.13G309300' => 'gma', 'Glyma.13G319000' => 'gma', 'Glyma.17G012600' => 'gma', 'Gohir.A06G148600' => 'ghi', 'Gohir.A07G115800' => 'ghi', 'Gohir.A08G003600' => 'ghi', 'Gohir.A09G093300' => 'ghi', 'Gohir.A09G105400' => 'ghi', 'Gohir.A09G105500' => 'ghi', 'Gohir.D06G154600' => 'ghi', 'Gohir.D07G120200' => 'ghi', 'Gohir.D08G013900' => 'ghi', 'Gohir.D09G093100' => 'ghi', 'Gohir.D09G102200' => 'ghi', 'Gohir.D09G102300' => 'ghi', 'Gorai.001G129400' => 'gra', 'Gorai.004G008200' => 'gra', 'Gorai.006G109800' => 'gra', 'Gorai.006G119500' => 'gra', 'Gorai.006G121300' => 'gra', 'Gorai.010G180700' => 'gra', 'GSVIVG01012716001' => 'vvi', 'GSVIVG01025118001' => 'vvi', 'GSVIVG01030439001' => 'vvi', 'GSVIVG01031397001' => 'vvi', 'HanXRQChr01g0004201' => 'han', 'HanXRQChr02g0054941' => 'han', 'HanXRQChr05g0141811' => 'han', 'HanXRQChr07g0197751' => 'han', 'HanXRQChr11g0346691' => 'han', 'HanXRQChr13g0396971' => 'han', 'HanXRQChr14g0432951' => 'han', 'HanXRQChr14g0452001' => 'han', 'HanXRQChr15g0496681' => 'han', 'HanXRQChr17g0557491' => 'han', 'HanXRQChr17g0557501' => 'han', 'Haze_06809' => 'cav', 'Haze_12852' => 'cav', 'Haze_15850' => 'cav', 'Haze_23446' => 'cav', 'Haze_23942' => 'cav', 'Haze_23943' => 'cav', 'Hma1.2p1_0091F.1_g046450' => 'hma', 'Hma1.2p1_0128F.1_g059910' => 'hma', 'Hma1.2p1_0249F.1_g102260' => 'hma', 'Hma1.2p1_0453F.1_g156190' => 'hma', 'Hma1.2p1_0695F.1_g204380' => 'hma', 'Hma1.2p1_0749F.1_g212650' => 'hma', 'Hma1.2p1_2156F.1_g315420' => 'hma', 'Hma1.2p1_2686F.1_g326940' => 'hma', 'HPP92_006428' => 'vpl', 'HPP92_012069' => 'vpl', 'HPP92_014129' => 'vpl', 'HPP92_014133' => 'vpl', 'HPP92_017315' => 'vpl', 'HPP92_026445' => 'vpl', 'HPP92_026446' => 'vpl', 'Hund00774' => 'sun', 'Hund07682' => 'sun', 'Hund21413' => 'sun', 'Hund23462' => 'sun', 'Hund23463' => 'sun', 'Lalb_Chr03g0027911' => 'lal', 'Lalb_Chr13g0304271' => 'lal', 'Lalb_Chr19g0137471' => 'lal', 'Lalb_Chr22g0350651' => 'lal', 'Lalb_Chr24g0395151' => 'lal', 'Lj1A1231T40' => 'lonja', 'Lj1A221T48' => 'lonja', 'Lj1C924T12' => 'lonja', 'Lj2C993G6' => 'lonja', 'Lj3g0005790' => 'lja', 'Lj3g0015432' => 'lja', 'Lj3g0017722' => 'lja', 'Lj3g0018497' => 'lja', 'Lj4g0025071' => 'lja', 'Lsat_1_v5_gn_1_129680' => 'lsa', 'Lsat_1_v5_gn_2_25321' => 'lsa', 'Lsat_1_v5_gn_2_95461' => 'lsa', 'Lsat_1_v5_gn_4_159620' => 'lsa', 'Lsat_1_v5_gn_6_41301' => 'lsa', 'Lsat_1_v5_gn_6_74660' => 'lsa', 'Lsat_1_v5_gn_7_11520' => 'lsa', 'Lsat_1_v5_gn_9_67680' => 'lsa', 'Manes.04G008300' => 'mes', 'Manes.04G008400' => 'mes', 'Manes.04G026500' => 'mes', 'Manes.10G135300' => 'mes', 'Manes.11G157300' => 'mes', 'Manes.12G074000' => 'mes', 'Manes.16G006200' => 'mes', 'Manes.17G026400' => 'mes', 'Mapoly0024s0086' => 'mpo', 'Mapoly0024s0087' => 'mpo', 'Mapoly0071s0057' => 'mpo', 'Mapoly0204s0012' => 'mpo', 'MBI04_g37681_MAGBIO' => 'mbi', 'MBI05_g17779_MAGBIO' => 'mbi', 'MBI12_g31184_MAGBIO' => 'mbi', 'MBI17_g11083_MAGBIO' => 'mbi', 'MBI18_g03883_MAGBIO' => 'mbi', 'MBI18_g28940_MAGBIO' => 'mbi', 'MCO01G690' => 'mco', 'MD03G1109900' => 'mdo', 'MD03G1134800' => 'mdo', 'MD05G1348000' => 'mdo', 'MD10G1322400' => 'mdo', 'MD11G1123300' => 'mdo', 'MD11G1157600' => 'mdo', 'Medtr2g084875' => 'mtr', 'Medtr2g088130' => 'mtr', 'Medtr4g055310' => 'mtr', 'Medtr4g061070' => 'mtr', 'Medtr4g132250' => 'mtr', 'MELO3C004795.2' => 'cme', 'MELO3C004797.2' => 'cme', 'MELO3C007396.2' => 'cme', 'MELO3C019277.2' => 'cme', 'MELO3C021449.2' => 'cme', 'MELO3C025736.2' => 'cme', 'Migut.D02175' => 'egut', 'Migut.H01573' => 'egut', 'Migut.M01327' => 'egut', 'Migut.N02513' => 'egut', 'MSTRG.14638' => 'ama', 'MSTRG.18632' => 'ama', 'MSTRG.7203' => 'ama', 'Nitab4.5_0000533g0140' => 'nta', 'Nitab4.5_0000888g0150' => 'nta', 'Nitab4.5_0001453g0040' => 'nta', 'Nitab4.5_0002827g0090' => 'nta', 'Nitab4.5_0003082g0040' => 'nta', 'Nitab4.5_0007799g0040' => 'nta', 'Nitab4.5_0008983g0010' => 'nta', 'Nitab4.5_0009017g0020' => 'nta', 'Nn1g02132' => 'nnu', 'Nn1g03492' => 'nnu', 'Nn1g03493' => 'nnu', 'Nn1g03494' => 'nnu', 'Nn1g07164' => 'nnu', 'Nn1g07291' => 'nnu', 'Nn2g10655' => 'nnu', 'Nn2g11652' => 'nnu', 'Nn2g14008' => 'nnu', 'Nn3g17476' => 'nnu', 'Nn3g17477' => 'nnu', 'Nn4g22370' => 'nnu', 'Nn4g25255' => 'nnu', 'Nn5g27755' => 'nnu', 'Nn6g34260' => 'nnu', 'Nn6g35041' => 'nnu', 'Oeu005924.1' => 'oeu', 'Oeu008383.1' => 'oeu', 'Oeu014928.1' => 'oeu', 'Oeu019889.1' => 'oeu', 'Oeu022271.1' => 'oeu', 'Oeu025271.1' => 'oeu', 'Oeu036302.1' => 'oeu', 'Oeu044100.1' => 'oeu', 'Os01g0528300' => 'osa', 'Os03g0286200' => 'osa', 'Os04g0406600' => 'osa', 'Os07g0512000' => 'osa', 'Os07g0694600' => 'osa', 'Os08g0411000' => 'osa', 'Os09g0565700' => 'osa', 'Os09g0566050' => 'osa', 'Os10g0523700' => 'osa', 'Peaxi162Scf00002g00514' => 'pax', 'Peaxi162Scf00047g01817' => 'pax', 'Peaxi162Scf00114g00001' => 'pax', 'Peaxi162Scf00147g00613' => 'pax', 'Peaxi162Scf00389g00425' => 'pax', 'PGR042G1139' => 'pgr', 'PGR042G3273' => 'pgr', 'PGR102G2180' => 'pgr', 'PGR119G0234' => 'pgr', 'PGR119G0668' => 'pgr', 'PGSC0003DMG400007122' => 'stu', 'PGSC0003DMG400016478' => 'stu', 'PGSC0003DMG400025374' => 'stu', 'PGSC0003DMG400026536' => 'stu', 'Phvul.003G079600' => 'pvu', 'Phvul.005G115600' => 'pvu', 'Phvul.005G127100' => 'pvu', 'Phvul.006G149500' => 'pvu', 'Phvul.006G149600' => 'pvu', 'Phvul.011G071800' => 'pvu', 'Phvul.011G090400' => 'pvu', 'Potri.004G013400' => 'ptr', 'Potri.004G188100' => 'ptr', 'Potri.008G195500' => 'ptr', 'Potri.009G148800' => 'ptr', 'Potri.011G004700' => 'ptr', 'Pp3c17_22810' => 'ppa', 'Pp3c18_4480' => 'ppa', 'Pp3c19_13030' => 'ppa', 'Pp3c1_33620' => 'ppa', 'Pp3c2_9380' => 'ppa', 'PRCOL_00001023' => 'pco', 'Prupe.3G216300' => 'ppe', 'Prupe.4G019500' => 'ppe', 'Prupe.6G092500' => 'ppe', 'Prupe.6G119200' => 'ppe', 'Psat0s1945g0080' => 'psa', 'Psat0s4167g0040' => 'psa', 'Psat1g185800' => 'psa', 'Psat4g006440' => 'psa', 'Psat4g006480' => 'psa', 'Psat4g168120' => 'psa', 'Psat5g255680' => 'psa', 'Psat5g261760' => 'psa', 'Psat7g222120' => 'psa', 'PSO063G7252' => 'pso', 'PSO170G4778' => 'pso', 'PSO210G2249' => 'pso', 'PSO339G2411' => 'pso', 'PSO339G2457' => 'pso', 'PSO339G2854' => 'pso', 'PSO339G4288' => 'pso', 'PSO339G4615' => 'pso', 'PSO384G2796' => 'pso', 'PSO384G2940' => 'pso', 'PSO384G4227' => 'pso', 'PSO478G1425' => 'pso', 'PSO541G3863' => 'pso', 'PSO675G0507' => 'pso', 'PSO782G0338' => 'pso', 'PSO832G0644' => 'pso', 'QL01p013664' => 'qlo', 'QL01p036598' => 'qlo', 'QL05p072984' => 'qlo', 'QL08p005768' => 'qlo', 'QL08p032743' => 'qlo', 'QL93p0073_0439' => 'qlo', 'QL93p0073_0444' => 'qlo', 'RcHm_v2.0_Chr5g0002851' => 'rch', 'RcHm_v2.0_Chr5g0055201' => 'rch', 'RcHm_v2.0_Chr5g0061191' => 'rch', 'RcHm_v2.0_Chr7g0203231' => 'rch', 'Rhsim01G0208100' => 'rsi', 'Rhsim01G0208200' => 'rsi', 'Rhsim02G0106500' => 'rsi', 'Rhsim03G0107900' => 'rsi', 'Rhsim06G0163400' => 'rsi', 'Rhsim13G0105200' => 'rsi', 'Sabra04G0006300' => 'sbr', 'Sabra04G0127000' => 'sbr', 'Sabra08G0148700' => 'sbr', 'Sabra09G0117400' => 'sbr', 'SalBow1G3326' => 'sbo', 'SalBow3G3228' => 'sbo', 'SalBow6G1634' => 'sbo', 'SalBow6G3603' => 'sbo', 'SalBow6G5266' => 'sbo', 'SalBow7G2265' => 'sbo', 'SalBow8G0850' => 'sbo', 'SalBow8G2592' => 'sbo', 'Sc05g0009240' => 'sci', 'Sc12g0002300' => 'sci', 'Sc21g0000100' => 'sci', 'Sc21g0004720' => 'sci', 'Sed0002949' => 'sed', 'Sed0004114' => 'sed', 'Sed0004306' => 'sed', 'Sed0006172' => 'sed', 'Sed0008413' => 'sed', 'Sed0013809' => 'sed', 'Sed0019556' => 'sed', 'SEGI_03570' => 'sgi', 'SEGI_07859' => 'sgi', 'SEGI_15042' => 'sgi', 'SEGI_16263' => 'sgi', 'SEGI_16552' => 'sgi', 'SEGI_24331' => 'sgi', 'SEGI_27316' => 'sgi', 'SEGI_29521' => 'sgi', 'SEGI_41342' => 'sgi', 'SGA_v2.0_scaffold27G11617' => 'sas', 'SGA_v2.0_scaffold316G48428' => 'sas', 'SGA_v2.0_scaffold49G18261' => 'sas', 'SGA_v2.0_scaffold7G03831' => 'sas', 'SGA_v2.0_scaffold93G28359' => 'sas', 'SHI02210' => 'shi', 'SHI06028' => 'shi', 'SHI06321' => 'shi', 'SMO111G0012' => 'smo', 'SMO228G0080' => 'smo', 'SMO356G0756' => 'smo', 'Solyc02g080620.3' => 'sly', 'Solyc06g074530.1' => 'sly', 'Solyc11g066890.1' => 'sly', 'Solyc11g072520.3' => 'sly', 'Sopen02g025330' => 'spe', 'Sopen06g031000' => 'spe', 'Sopen09g008240' => 'spe', 'Sopen09g025210' => 'spe', 'Sopen11g026600' => 'spe', 'Sopen11g030170' => 'spe', 'Sp1g10420' => 'spa', 'Sp3g06570' => 'spa', 'Sp4g10660' => 'spa', 'Sp5g16460' => 'spa', 'Sp6g22710' => 'spa', 'TAR365G0112' => 'tar', 'TAR369G0717' => 'tar', 'TAR374G0976' => 'tar', 'TAR623G1128' => 'tar', 'TAR626G1937' => 'tar', 'TAR627G0123' => 'tar', 'TAR628G0305' => 'tar', 'TAR636G1176' => 'tar', 'TAR636G2442' => 'tar', 'THA.LOC104800556' => 'tha', 'THA.LOC104809501' => 'tha', 'THA.LOC104815126' => 'tha', 'THA.LOC104815732' => 'tha', 'THA.LOC104823528' => 'tha', 'Thecc.02G365600' => 'tca', 'Thecc.06G222300' => 'tca', 'Thecc.09G261800' => 'tca', 'Thecc.09G291400' => 'tca', 'Thhalv10003028m.g' => 'esa', 'Thhalv10007886m.g' => 'esa', 'Thhalv10016085m.g' => 'esa', 'Thhalv10016681m.g' => 'esa', 'Thhalv10020951m.g' => 'esa', 'TPR.G15598' => 'tpr', 'TPR.G29305' => 'tpr', 'TPR.G32395' => 'tpr', 'TPR.G36998' => 'tpr', 'TPR.G4227' => 'tpr', 'TWI18G1433' => 'twi', 'TWI31G0755' => 'twi', 'TWI38G0912' => 'twi', 'TWI75G1097' => 'twi', 'TWI75G1619' => 'twi', 'TWI79G1336' => 'twi', 'unitig_0.g943' => 'ugi', 'unitig_0.g944' => 'ugi', 'unitig_22.g6646' => 'ugi', 'unitig_37.g12681' => 'ugi', 'unitig_8.g3290' => 'ugi', 'vmacro03278' => 'vma', 'vmacro12197' => 'vma', 'vmacro14478' => 'vma', 'vmacro15787' => 'vma', 'vmacro15789' => 'vma', 'vmacro15790' => 'vma', 'vmacro15806' => 'vma', 'vmacro22907' => 'vma', 'vmacro22908' => 'vma', 'vmacro22909' => 'vma', 'vmacro23108' => 'vma', 'VMungo0540G0540' => 'vmu', 'VMungo0540G2468' => 'vmu', 'VMungo1080G0390' => 'vmu', 'VMungo1080G1165' => 'vmu', 'VMungo1127G0170' => 'vmu', 'VMungo1127G2099' => 'vmu', 'VMungo1215G3013' => 'vmu', 'Zm00001eb013110' => 'zma', 'Zm00001eb084260' => 'zma', 'Zm00001eb096110' => 'zma', 'Zm00001eb217510' => 'zma', 'Zm00001eb322550' => 'zma', 'Zm00001eb390770' => 'zma', 'Zm00001eb397170' => 'zma', 'Zm00001eb404610' => 'zma', 'Zm00001eb421790' => 'zma' ) $gf_id = 'HOM05D000911' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000911' ) $data_identifier = 'HOM05D000911' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 16, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 5, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 6, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 8, 'nnu' => (int) 16, 'oeu' => (int) 8, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 5, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 16, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421790' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000911', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27780' => 'bna', 'A03p35380' => 'bna', 'A04p21160' => 'bna', 'A05p40570' => 'bna', 'A06p26900' => 'bna', 'A08p33230' => 'bna', 'A09p65960' => 'bna', 'A10p18290' => 'bna', 'Aa31LG1G12990' => 'aar', 'Aa31LG1G2980' => 'aar', 'Aa31LG4G14320' => 'aar', 'Aa31LG7G11800' => 'aar', 'Aa31sc36G50' => 'aar', 'Aa31sc36G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3721' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5459' => 'aag', 'Actinidia03028' => 'ach', 'Actinidia03753' => 'ach', 'Actinidia04187' => 'ach', 'Actinidia05509' => 'ach', 'Actinidia24180' => 'ach', 'Actinidia26906' => 'ach', 'Actinidia37097' => 'ach', 'Actinidia38249' => 'ach', 'Ah.01g003470' => 'amhyb', 'Ah.01g004580' => 'amhyb', 'Ah.01g014850' => 'amhyb', 'Ah.01g016830' => 'amhyb', 'Ah.14g088000' => 'amhyb', 'AL1G22980' => 'aly', 'AL3G18990' => 'aly', 'AL4G22440' => 'aly', 'AL4G33180' => 'aly', 'AL5G22920' => 'aly', 'AL6G33660' => 'aly', 'AL8G20720' => 'aly', 'Aqoxy1G00935' => 'aox', 'Aqoxy1G02094' => 'aox', 'Aqoxy2G01239' => 'aox', 'Aqoxy4G01870' => 'aox', 'Aqoxy7G00450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.36ZVTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71EM27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5D6C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH3WRE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3NCM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RIM768' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YB5YRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z36GDV' => 'arhy', 'AT1G08250' => 'ath', 'AT1G11790' => 'ath', 'AT2G27820' => 'ath', 'AT3G07630' => 'ath', 'AT3G44720' => 'ath', 'AT5G22630' => 'ath', 'ATR0693G304' => 'atr', 'ATR0794G109' => 'atr', 'ATR0820G120' => 'atr', 'ATR1159G064' => 'atr', 'Atru.chr10.2239' => 'acertr', 'Atru.chr3.3371' => 'acertr', 'Atru.chr6.3202' => 'acertr', 'AUR62006499' => 'cqu', 'AUR62012718' => 'cqu', 'AUR62021938' => 'cqu', 'AUR62023932' => 'cqu', 'AUR62025034' => 'cqu', 'AUR62025035' => 'cqu', 'AUR62038307' => 'cqu', 'AUR62043466' => 'cqu', 'BcaB02g10748' => 'bca', 'BcaB03g13231' => 'bca', 'BcaB03g14689' => 'bca', 'BcaB05g22716' => 'bca', 'BcaB06g28172' => 'bca', 'BcaB08g36413' => 'bca', 'BcaC01g02186' => 'bca', 'BcaC01g04272' => 'bca', 'BcaC02g08080' => 'bca', 'BcaC02g08227' => 'bca', 'BcaC03g13901' => 'bca', 'BcaC04g19593' => 'bca', 'BcaC04g20874' => 'bca', 'BcaC05g29557' => 'bca', 'BcaC06g35505' => 'bca', 'BcaC07g41954' => 'bca', 'BcaC07g41955' => 'bca', 'BcaC07g41956' => 'bca', 'BcaC07g42519' => 'bca', 'BcaC07g42520' => 'bca', 'BcaC07g42523' => 'bca', 'BcaC07g42524' => 'bca', 'BcaC07g42525' => 'bca', 'BcaC08g47480' => 'bca', 'BcaC08g47481' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00530' => 'bna', 'BolC2t07178H' => 'bol', 'BolC3t16567H' => 'bol', 'BolC4t27234H' => 'bol', 'BolC5t29728H' => 'bol', 'BolC5t34622H' => 'bol', 'BolC6t40321H' => 'bol', 'BolC7t42028H' => 'bol', 'BolC8t49125H' => 'bol', 'BolC8t52538H' => 'bol', 'BolC8t52539H' => 'bol', 'BolC9t56681H' => 'bol', 'BolC9t58266H' => 'bol', 'BolSC21t60294H' => 'bol', 'BraA02t05670Z' => 'bra', 'BraA03t12716Z' => 'bra', 'BraA04t17685Z' => 'bra', 'BraA05t22788Z' => 'bra', 'BraA06t24032Z' => 'bra', 'BraA06t25625Z' => 'bra', 'BraA07t27930Z' => 'bra', 'BraA08t35242Z' => 'bra', 'BraA09t38609Z' => 'bra', 'BraA10t43905Z' => 'bra', 'C02p11060' => 'bna', 'C03p42990' => 'bna', 'C03p67310' => 'bna', 'C04p56990' => 'bna', 'C04p58660' => 'bna', 'C05p09890' => 'bna', 'C05p59680' => 'bna', 'C06p19830' => 'bna', 'C06p53040' => 'bna', 'C07p15230' => 'bna', 'C08p50070' => 'bna', 'C08p50090' => 'bna', 'C09p38330' => 'bna', 'C09p53940' => 'bna', 'CAN.G1014.1' => 'can', 'CAN.G644.30' => 'can', 'CAN.G84.47' => 'can', 'CAN.G919.8' => 'can', 'CANSAT54G0113' => 'cansat', 'CANSAT54G1286' => 'cansat', 'CANSAT64G1020' => 'cansat', 'CARHR008080' => 'chi', 'CARHR008090' => 'chi', 'CARHR012130' => 'chi', 'CARHR038390' => 'chi', 'CARHR082330' => 'chi', 'CARHR120520' => 'chi', 'CARHR151470' => 'chi', 'CARHR190950' => 'chi', 'Carub.0001s0760' => 'cru', 'Carub.0001s1146' => 'cru', 'Carub.0003s0721' => 'cru', 'Carub.0004s0858' => 'cru', 'Carub.0005s1040' => 'cru', 'Carub.0006s2035' => 'cru', 'Carub.0015s0005' => 'cru', 'Ca_01607_v3' => 'car', 'Ca_01677_v3' => 'car', 'Ca_06087_v3' => 'car', 'Ca_19238_v3' => 'car', 'Ca_19373_v3' => 'car', 'Ca_21079_v3' => 'car', 'CBR_g54016' => 'cbr', 'CBR_g54018' => 'cbr', 'CBR_g54020' => 'cbr', 'Cc01_g09780' => 'ccan', 'Cc01_g11680' => 'ccan', 'Cc02_g15610' => 'ccan', 'Cc05_g04350' => 'ccan', 'Cc09_g01580' => 'ccan', 'CDE01G0795' => 'cde', 'CDE02G2024' => 'cde', 'CDE02G2260' => 'cde', 'CDE02G4561' => 'cde', 'CDE05G2733' => 'cde', 'CDE05G3422' => 'cde', 'CDE06G2003' => 'cde', 'CDE08G0576' => 'cde', 'CDE09G0048' => 'cde', 'CDE11G0805' => 'cde', 'Cfa003644' => 'cfa', 'Cfa006290' => 'cfa', 'Cfa010080' => 'cfa', 'Cfa011376' => 'cfa', 'Cfa011576' => 'cfa', 'Cfa011577' => 'cfa', 'Cfa014389' => 'cfa', 'Ciclev10006044m.g' => 'ccl', 'Ciclev10006954m.g' => 'ccl', 'Ciclev10015131m.g' => 'ccl', 'Ciclev10015580m.g' => 'ccl', 'Ciclev10028359m.g' => 'ccl', 'Ciclev10028573m.g' => 'ccl', 'CiPaw.03G159300' => 'cil', 'CiPaw.04G115100' => 'cil', 'CiPaw.09G092800' => 'cil', 'CiPaw.10G071800' => 'cil', 'CiPaw.13G105800' => 'cil', 'CiPaw.13G141000' => 'cil', 'CiPaw.14G103400' => 'cil', 'ClCG01G012700' => 'cla', 'ClCG01G012720' => 'cla', 'ClCG01G021920' => 'cla', 'ClCG02G008870' => 'cla', 'ClCG02G020840' => 'cla', 'ClCG02G021930' => 'cla', 'COL.COLO4_19302' => 'col', 'COL.COLO4_25262' => 'col', 'COL.COLO4_31788' => 'col', 'Cpa.g.c34684' => 'cpa', 'Cpa.g.c36520.1' => 'cpa', 'Cpa.g.c45626' => 'cpa', 'Cpa.g.sc121.17' => 'cpa', 'Cpa.g.sc13.22' => 'cpa', 'Cpa.g.sc87.88' => 'cpa', 'Cre06.g261800' => 'cre', 'CsaV3_1G014500' => 'csa', 'CsaV3_1G014510' => 'csa', 'CsaV3_2G034880' => 'csa', 'CsaV3_6G014760' => 'csa', 'CsaV3_6G021500' => 'csa', 'CsaV3_6G048980' => 'csa', 'CSS0002511' => 'camsi', 'CSS0007556' => 'camsi', 'CSS0008532' => 'camsi', 'CSS0009709' => 'camsi', 'CSS0010486' => 'camsi', 'CSS0016768' => 'camsi', 'CSS0023512' => 'camsi', 'CSS0025341' => 'camsi', 'CSS0027999' => 'camsi', 'CSS0028944' => 'camsi', 'CSS0032292' => 'camsi', 'CSS0032464' => 'camsi', 'CSS0037153' => 'camsi', 'CSS0039256' => 'camsi', 'CSS0048392' => 'camsi', 'CSS0050458' => 'camsi', 'DCAR_004224' => 'dca', 'DCAR_006147' => 'dca', 'DCAR_006465' => 'dca', 'DCAR_008159' => 'dca', 'DCAR_012164' => 'dca', 'DCAR_019764' => 'dca', 'Dinv05418' => 'din', 'Dinv10839' => 'din', 'Dinv12521' => 'din', 'Dinv13900' => 'din', 'Dinv29426' => 'din', 'Duzib150G0263' => 'dzi', 'Duzib168G1178' => 'dzi', 'Duzib168G1924' => 'dzi', 'Duzib170G0299' => 'dzi', 'Duzib170G0813' => 'dzi', 'Duzib235G1128' => 'dzi', 'Duzib248G1060' => 'dzi', 'ECA232G1910' => 'eca', 'ECA233G4621' => 'eca', 'ECA238G1216' => 'eca', 'ECA238G1784' => 'eca', 'ECA248G1242' => 'eca', 'EL10Ac8g20071' => 'bvu', 'EL10Ac9g21086' => 'bvu', 'EL10Ac9g22407' => 'bvu', 'EL10Ac9g22412' => 'bvu', 'Eucgr.A01119' => 'egr', 'Eucgr.E04043' => 'egr', 'Eucgr.J00428' => 'egr', 'Eucgr.J00958' => 'egr', 'FAN11G3091' => 'fan', 'FAN11G3651' => 'fan', 'FAN16G2566' => 'fan', 'FAN21G3155' => 'fan', 'FAN21G3400' => 'fan', 'FAN21G3543' => 'fan', 'FAN25G0234' => 'fan', 'FAN25G1422' => 'fan', 'FAN25G3392' => 'fan', 'FvH4_3g01940' => 'fve', 'FvH4_3g29870' => 'fve', 'FvH4_3g33680' => 'fve', 'Glyma.09G004200' => 'gma', 'Glyma.11G151288' => 'gma', 'Glyma.11G189100' => 'gma', 'Glyma.12G072500' => 'gma', 'Glyma.12G085500' => 'gma', 'Glyma.12G181800' => 'gma', 'Glyma.12G193000' => 'gma', 'Glyma.13G309300' => 'gma', 'Glyma.13G319000' => 'gma', 'Glyma.17G012600' => 'gma', 'Gohir.A06G148600' => 'ghi', 'Gohir.A07G115800' => 'ghi', 'Gohir.A08G003600' => 'ghi', 'Gohir.A09G093300' => 'ghi', 'Gohir.A09G105400' => 'ghi', 'Gohir.A09G105500' => 'ghi', 'Gohir.D06G154600' => 'ghi', 'Gohir.D07G120200' => 'ghi', 'Gohir.D08G013900' => 'ghi', 'Gohir.D09G093100' => 'ghi', 'Gohir.D09G102200' => 'ghi', 'Gohir.D09G102300' => 'ghi', 'Gorai.001G129400' => 'gra', 'Gorai.004G008200' => 'gra', 'Gorai.006G109800' => 'gra', 'Gorai.006G119500' => 'gra', 'Gorai.006G121300' => 'gra', 'Gorai.010G180700' => 'gra', 'GSVIVG01012716001' => 'vvi', 'GSVIVG01025118001' => 'vvi', 'GSVIVG01030439001' => 'vvi', 'GSVIVG01031397001' => 'vvi', 'HanXRQChr01g0004201' => 'han', 'HanXRQChr02g0054941' => 'han', 'HanXRQChr05g0141811' => 'han', 'HanXRQChr07g0197751' => 'han', 'HanXRQChr11g0346691' => 'han', 'HanXRQChr13g0396971' => 'han', 'HanXRQChr14g0432951' => 'han', 'HanXRQChr14g0452001' => 'han', 'HanXRQChr15g0496681' => 'han', 'HanXRQChr17g0557491' => 'han', 'HanXRQChr17g0557501' => 'han', 'Haze_06809' => 'cav', 'Haze_12852' => 'cav', 'Haze_15850' => 'cav', 'Haze_23446' => 'cav', 'Haze_23942' => 'cav', 'Haze_23943' => 'cav', 'Hma1.2p1_0091F.1_g046450' => 'hma', 'Hma1.2p1_0128F.1_g059910' => 'hma', 'Hma1.2p1_0249F.1_g102260' => 'hma', 'Hma1.2p1_0453F.1_g156190' => 'hma', 'Hma1.2p1_0695F.1_g204380' => 'hma', 'Hma1.2p1_0749F.1_g212650' => 'hma', 'Hma1.2p1_2156F.1_g315420' => 'hma', 'Hma1.2p1_2686F.1_g326940' => 'hma', 'HPP92_006428' => 'vpl', 'HPP92_012069' => 'vpl', 'HPP92_014129' => 'vpl', 'HPP92_014133' => 'vpl', 'HPP92_017315' => 'vpl', 'HPP92_026445' => 'vpl', 'HPP92_026446' => 'vpl', 'Hund00774' => 'sun', 'Hund07682' => 'sun', 'Hund21413' => 'sun', 'Hund23462' => 'sun', 'Hund23463' => 'sun', 'Lalb_Chr03g0027911' => 'lal', 'Lalb_Chr13g0304271' => 'lal', 'Lalb_Chr19g0137471' => 'lal', 'Lalb_Chr22g0350651' => 'lal', 'Lalb_Chr24g0395151' => 'lal', 'Lj1A1231T40' => 'lonja', 'Lj1A221T48' => 'lonja', 'Lj1C924T12' => 'lonja', 'Lj2C993G6' => 'lonja', 'Lj3g0005790' => 'lja', 'Lj3g0015432' => 'lja', 'Lj3g0017722' => 'lja', 'Lj3g0018497' => 'lja', 'Lj4g0025071' => 'lja', 'Lsat_1_v5_gn_1_129680' => 'lsa', 'Lsat_1_v5_gn_2_25321' => 'lsa', 'Lsat_1_v5_gn_2_95461' => 'lsa', 'Lsat_1_v5_gn_4_159620' => 'lsa', 'Lsat_1_v5_gn_6_41301' => 'lsa', 'Lsat_1_v5_gn_6_74660' => 'lsa', 'Lsat_1_v5_gn_7_11520' => 'lsa', 'Lsat_1_v5_gn_9_67680' => 'lsa', 'Manes.04G008300' => 'mes', 'Manes.04G008400' => 'mes', 'Manes.04G026500' => 'mes', 'Manes.10G135300' => 'mes', 'Manes.11G157300' => 'mes', 'Manes.12G074000' => 'mes', 'Manes.16G006200' => 'mes', 'Manes.17G026400' => 'mes', 'Mapoly0024s0086' => 'mpo', 'Mapoly0024s0087' => 'mpo', 'Mapoly0071s0057' => 'mpo', 'Mapoly0204s0012' => 'mpo', 'MBI04_g37681_MAGBIO' => 'mbi', 'MBI05_g17779_MAGBIO' => 'mbi', 'MBI12_g31184_MAGBIO' => 'mbi', 'MBI17_g11083_MAGBIO' => 'mbi', 'MBI18_g03883_MAGBIO' => 'mbi', 'MBI18_g28940_MAGBIO' => 'mbi', 'MCO01G690' => 'mco', 'MD03G1109900' => 'mdo', 'MD03G1134800' => 'mdo', 'MD05G1348000' => 'mdo', 'MD10G1322400' => 'mdo', 'MD11G1123300' => 'mdo', 'MD11G1157600' => 'mdo', 'Medtr2g084875' => 'mtr', 'Medtr2g088130' => 'mtr', 'Medtr4g055310' => 'mtr', 'Medtr4g061070' => 'mtr', 'Medtr4g132250' => 'mtr', 'MELO3C004795.2' => 'cme', 'MELO3C004797.2' => 'cme', 'MELO3C007396.2' => 'cme', 'MELO3C019277.2' => 'cme', 'MELO3C021449.2' => 'cme', 'MELO3C025736.2' => 'cme', 'Migut.D02175' => 'egut', 'Migut.H01573' => 'egut', 'Migut.M01327' => 'egut', 'Migut.N02513' => 'egut', 'MSTRG.14638' => 'ama', 'MSTRG.18632' => 'ama', 'MSTRG.7203' => 'ama', 'Nitab4.5_0000533g0140' => 'nta', 'Nitab4.5_0000888g0150' => 'nta', 'Nitab4.5_0001453g0040' => 'nta', 'Nitab4.5_0002827g0090' => 'nta', 'Nitab4.5_0003082g0040' => 'nta', 'Nitab4.5_0007799g0040' => 'nta', 'Nitab4.5_0008983g0010' => 'nta', 'Nitab4.5_0009017g0020' => 'nta', 'Nn1g02132' => 'nnu', 'Nn1g03492' => 'nnu', 'Nn1g03493' => 'nnu', 'Nn1g03494' => 'nnu', 'Nn1g07164' => 'nnu', 'Nn1g07291' => 'nnu', 'Nn2g10655' => 'nnu', 'Nn2g11652' => 'nnu', 'Nn2g14008' => 'nnu', 'Nn3g17476' => 'nnu', 'Nn3g17477' => 'nnu', 'Nn4g22370' => 'nnu', 'Nn4g25255' => 'nnu', 'Nn5g27755' => 'nnu', 'Nn6g34260' => 'nnu', 'Nn6g35041' => 'nnu', 'Oeu005924.1' => 'oeu', 'Oeu008383.1' => 'oeu', 'Oeu014928.1' => 'oeu', 'Oeu019889.1' => 'oeu', 'Oeu022271.1' => 'oeu', 'Oeu025271.1' => 'oeu', 'Oeu036302.1' => 'oeu', 'Oeu044100.1' => 'oeu', 'Os01g0528300' => 'osa', 'Os03g0286200' => 'osa', 'Os04g0406600' => 'osa', 'Os07g0512000' => 'osa', 'Os07g0694600' => 'osa', 'Os08g0411000' => 'osa', 'Os09g0565700' => 'osa', 'Os09g0566050' => 'osa', 'Os10g0523700' => 'osa', 'Peaxi162Scf00002g00514' => 'pax', 'Peaxi162Scf00047g01817' => 'pax', 'Peaxi162Scf00114g00001' => 'pax', 'Peaxi162Scf00147g00613' => 'pax', 'Peaxi162Scf00389g00425' => 'pax', 'PGR042G1139' => 'pgr', 'PGR042G3273' => 'pgr', 'PGR102G2180' => 'pgr', 'PGR119G0234' => 'pgr', 'PGR119G0668' => 'pgr', 'PGSC0003DMG400007122' => 'stu', 'PGSC0003DMG400016478' => 'stu', 'PGSC0003DMG400025374' => 'stu', 'PGSC0003DMG400026536' => 'stu', 'Phvul.003G079600' => 'pvu', 'Phvul.005G115600' => 'pvu', 'Phvul.005G127100' => 'pvu', 'Phvul.006G149500' => 'pvu', 'Phvul.006G149600' => 'pvu', 'Phvul.011G071800' => 'pvu', 'Phvul.011G090400' => 'pvu', 'Potri.004G013400' => 'ptr', 'Potri.004G188100' => 'ptr', 'Potri.008G195500' => 'ptr', 'Potri.009G148800' => 'ptr', 'Potri.011G004700' => 'ptr', 'Pp3c17_22810' => 'ppa', 'Pp3c18_4480' => 'ppa', 'Pp3c19_13030' => 'ppa', 'Pp3c1_33620' => 'ppa', 'Pp3c2_9380' => 'ppa', 'PRCOL_00001023' => 'pco', 'Prupe.3G216300' => 'ppe', 'Prupe.4G019500' => 'ppe', 'Prupe.6G092500' => 'ppe', 'Prupe.6G119200' => 'ppe', 'Psat0s1945g0080' => 'psa', 'Psat0s4167g0040' => 'psa', 'Psat1g185800' => 'psa', 'Psat4g006440' => 'psa', 'Psat4g006480' => 'psa', 'Psat4g168120' => 'psa', 'Psat5g255680' => 'psa', 'Psat5g261760' => 'psa', 'Psat7g222120' => 'psa', 'PSO063G7252' => 'pso', 'PSO170G4778' => 'pso', 'PSO210G2249' => 'pso', 'PSO339G2411' => 'pso', 'PSO339G2457' => 'pso', 'PSO339G2854' => 'pso', 'PSO339G4288' => 'pso', 'PSO339G4615' => 'pso', 'PSO384G2796' => 'pso', 'PSO384G2940' => 'pso', 'PSO384G4227' => 'pso', 'PSO478G1425' => 'pso', 'PSO541G3863' => 'pso', 'PSO675G0507' => 'pso', 'PSO782G0338' => 'pso', 'PSO832G0644' => 'pso', 'QL01p013664' => 'qlo', 'QL01p036598' => 'qlo', 'QL05p072984' => 'qlo', 'QL08p005768' => 'qlo', 'QL08p032743' => 'qlo', 'QL93p0073_0439' => 'qlo', 'QL93p0073_0444' => 'qlo', 'RcHm_v2.0_Chr5g0002851' => 'rch', 'RcHm_v2.0_Chr5g0055201' => 'rch', 'RcHm_v2.0_Chr5g0061191' => 'rch', 'RcHm_v2.0_Chr7g0203231' => 'rch', 'Rhsim01G0208100' => 'rsi', 'Rhsim01G0208200' => 'rsi', 'Rhsim02G0106500' => 'rsi', 'Rhsim03G0107900' => 'rsi', 'Rhsim06G0163400' => 'rsi', 'Rhsim13G0105200' => 'rsi', 'Sabra04G0006300' => 'sbr', 'Sabra04G0127000' => 'sbr', 'Sabra08G0148700' => 'sbr', 'Sabra09G0117400' => 'sbr', 'SalBow1G3326' => 'sbo', 'SalBow3G3228' => 'sbo', 'SalBow6G1634' => 'sbo', 'SalBow6G3603' => 'sbo', 'SalBow6G5266' => 'sbo', 'SalBow7G2265' => 'sbo', 'SalBow8G0850' => 'sbo', 'SalBow8G2592' => 'sbo', 'Sc05g0009240' => 'sci', 'Sc12g0002300' => 'sci', 'Sc21g0000100' => 'sci', 'Sc21g0004720' => 'sci', 'Sed0002949' => 'sed', 'Sed0004114' => 'sed', 'Sed0004306' => 'sed', 'Sed0006172' => 'sed', 'Sed0008413' => 'sed', 'Sed0013809' => 'sed', 'Sed0019556' => 'sed', 'SEGI_03570' => 'sgi', 'SEGI_07859' => 'sgi', 'SEGI_15042' => 'sgi', 'SEGI_16263' => 'sgi', 'SEGI_16552' => 'sgi', 'SEGI_24331' => 'sgi', 'SEGI_27316' => 'sgi', 'SEGI_29521' => 'sgi', 'SEGI_41342' => 'sgi', 'SGA_v2.0_scaffold27G11617' => 'sas', 'SGA_v2.0_scaffold316G48428' => 'sas', 'SGA_v2.0_scaffold49G18261' => 'sas', 'SGA_v2.0_scaffold7G03831' => 'sas', 'SGA_v2.0_scaffold93G28359' => 'sas', 'SHI02210' => 'shi', 'SHI06028' => 'shi', 'SHI06321' => 'shi', 'SMO111G0012' => 'smo', 'SMO228G0080' => 'smo', 'SMO356G0756' => 'smo', 'Solyc02g080620.3' => 'sly', 'Solyc06g074530.1' => 'sly', 'Solyc11g066890.1' => 'sly', 'Solyc11g072520.3' => 'sly', 'Sopen02g025330' => 'spe', 'Sopen06g031000' => 'spe', 'Sopen09g008240' => 'spe', 'Sopen09g025210' => 'spe', 'Sopen11g026600' => 'spe', 'Sopen11g030170' => 'spe', 'Sp1g10420' => 'spa', 'Sp3g06570' => 'spa', 'Sp4g10660' => 'spa', 'Sp5g16460' => 'spa', 'Sp6g22710' => 'spa', 'TAR365G0112' => 'tar', 'TAR369G0717' => 'tar', 'TAR374G0976' => 'tar', 'TAR623G1128' => 'tar', 'TAR626G1937' => 'tar', 'TAR627G0123' => 'tar', 'TAR628G0305' => 'tar', 'TAR636G1176' => 'tar', 'TAR636G2442' => 'tar', 'THA.LOC104800556' => 'tha', 'THA.LOC104809501' => 'tha', 'THA.LOC104815126' => 'tha', 'THA.LOC104815732' => 'tha', 'THA.LOC104823528' => 'tha', 'Thecc.02G365600' => 'tca', 'Thecc.06G222300' => 'tca', 'Thecc.09G261800' => 'tca', 'Thecc.09G291400' => 'tca', 'Thhalv10003028m.g' => 'esa', 'Thhalv10007886m.g' => 'esa', 'Thhalv10016085m.g' => 'esa', 'Thhalv10016681m.g' => 'esa', 'Thhalv10020951m.g' => 'esa', 'TPR.G15598' => 'tpr', 'TPR.G29305' => 'tpr', 'TPR.G32395' => 'tpr', 'TPR.G36998' => 'tpr', 'TPR.G4227' => 'tpr', 'TWI18G1433' => 'twi', 'TWI31G0755' => 'twi', 'TWI38G0912' => 'twi', 'TWI75G1097' => 'twi', 'TWI75G1619' => 'twi', 'TWI79G1336' => 'twi', 'unitig_0.g943' => 'ugi', 'unitig_0.g944' => 'ugi', 'unitig_22.g6646' => 'ugi', 'unitig_37.g12681' => 'ugi', 'unitig_8.g3290' => 'ugi', 'vmacro03278' => 'vma', 'vmacro12197' => 'vma', 'vmacro14478' => 'vma', 'vmacro15787' => 'vma', 'vmacro15789' => 'vma', 'vmacro15790' => 'vma', 'vmacro15806' => 'vma', 'vmacro22907' => 'vma', 'vmacro22908' => 'vma', 'vmacro22909' => 'vma', 'vmacro23108' => 'vma', 'VMungo0540G0540' => 'vmu', 'VMungo0540G2468' => 'vmu', 'VMungo1080G0390' => 'vmu', 'VMungo1080G1165' => 'vmu', 'VMungo1127G0170' => 'vmu', 'VMungo1127G2099' => 'vmu', 'VMungo1215G3013' => 'vmu', 'Zm00001eb013110' => 'zma', 'Zm00001eb084260' => 'zma', 'Zm00001eb096110' => 'zma', 'Zm00001eb217510' => 'zma', 'Zm00001eb322550' => 'zma', 'Zm00001eb390770' => 'zma', 'Zm00001eb397170' => 'zma', 'Zm00001eb404610' => 'zma', 'Zm00001eb421790' => 'zma' ), 'gf_id' => 'HOM05D000911', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000911' ), 'data_identifier' => 'HOM05D000911', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000911', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27780' => 'bna', 'A03p35380' => 'bna', 'A04p21160' => 'bna', 'A05p40570' => 'bna', 'A06p26900' => 'bna', 'A08p33230' => 'bna', 'A09p65960' => 'bna', 'A10p18290' => 'bna', 'Aa31LG1G12990' => 'aar', 'Aa31LG1G2980' => 'aar', 'Aa31LG4G14320' => 'aar', 'Aa31LG7G11800' => 'aar', 'Aa31sc36G50' => 'aar', 'Aa31sc36G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3721' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5459' => 'aag', 'Actinidia03028' => 'ach', 'Actinidia03753' => 'ach', 'Actinidia04187' => 'ach', 'Actinidia05509' => 'ach', 'Actinidia24180' => 'ach', 'Actinidia26906' => 'ach', 'Actinidia37097' => 'ach', 'Actinidia38249' => 'ach', 'Ah.01g003470' => 'amhyb', 'Ah.01g004580' => 'amhyb', 'Ah.01g014850' => 'amhyb', 'Ah.01g016830' => 'amhyb', 'Ah.14g088000' => 'amhyb', 'AL1G22980' => 'aly', 'AL3G18990' => 'aly', 'AL4G22440' => 'aly', 'AL4G33180' => 'aly', 'AL5G22920' => 'aly', 'AL6G33660' => 'aly', 'AL8G20720' => 'aly', 'Aqoxy1G00935' => 'aox', 'Aqoxy1G02094' => 'aox', 'Aqoxy2G01239' => 'aox', 'Aqoxy4G01870' => 'aox', 'Aqoxy7G00450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.36ZVTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71EM27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5D6C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH3WRE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3NCM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RIM768' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YB5YRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z36GDV' => 'arhy', 'AT1G08250' => 'ath', 'AT1G11790' => 'ath', 'AT2G27820' => 'ath', 'AT3G07630' => 'ath', 'AT3G44720' => 'ath', 'AT5G22630' => 'ath', 'ATR0693G304' => 'atr', 'ATR0794G109' => 'atr', 'ATR0820G120' => 'atr', 'ATR1159G064' => 'atr', 'Atru.chr10.2239' => 'acertr', 'Atru.chr3.3371' => 'acertr', 'Atru.chr6.3202' => 'acertr', 'AUR62006499' => 'cqu', 'AUR62012718' => 'cqu', 'AUR62021938' => 'cqu', 'AUR62023932' => 'cqu', 'AUR62025034' => 'cqu', 'AUR62025035' => 'cqu', 'AUR62038307' => 'cqu', 'AUR62043466' => 'cqu', 'BcaB02g10748' => 'bca', 'BcaB03g13231' => 'bca', 'BcaB03g14689' => 'bca', 'BcaB05g22716' => 'bca', 'BcaB06g28172' => 'bca', 'BcaB08g36413' => 'bca', 'BcaC01g02186' => 'bca', 'BcaC01g04272' => 'bca', 'BcaC02g08080' => 'bca', 'BcaC02g08227' => 'bca', 'BcaC03g13901' => 'bca', 'BcaC04g19593' => 'bca', 'BcaC04g20874' => 'bca', 'BcaC05g29557' => 'bca', 'BcaC06g35505' => 'bca', 'BcaC07g41954' => 'bca', 'BcaC07g41955' => 'bca', 'BcaC07g41956' => 'bca', 'BcaC07g42519' => 'bca', 'BcaC07g42520' => 'bca', 'BcaC07g42523' => 'bca', 'BcaC07g42524' => 'bca', 'BcaC07g42525' => 'bca', 'BcaC08g47480' => 'bca', 'BcaC08g47481' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00530' => 'bna', 'BolC2t07178H' => 'bol', 'BolC3t16567H' => 'bol', 'BolC4t27234H' => 'bol', 'BolC5t29728H' => 'bol', 'BolC5t34622H' => 'bol', 'BolC6t40321H' => 'bol', 'BolC7t42028H' => 'bol', 'BolC8t49125H' => 'bol', 'BolC8t52538H' => 'bol', 'BolC8t52539H' => 'bol', 'BolC9t56681H' => 'bol', 'BolC9t58266H' => 'bol', 'BolSC21t60294H' => 'bol', 'BraA02t05670Z' => 'bra', 'BraA03t12716Z' => 'bra', 'BraA04t17685Z' => 'bra', 'BraA05t22788Z' => 'bra', 'BraA06t24032Z' => 'bra', 'BraA06t25625Z' => 'bra', 'BraA07t27930Z' => 'bra', 'BraA08t35242Z' => 'bra', 'BraA09t38609Z' => 'bra', 'BraA10t43905Z' => 'bra', 'C02p11060' => 'bna', 'C03p42990' => 'bna', 'C03p67310' => 'bna', 'C04p56990' => 'bna', 'C04p58660' => 'bna', 'C05p09890' => 'bna', 'C05p59680' => 'bna', 'C06p19830' => 'bna', 'C06p53040' => 'bna', 'C07p15230' => 'bna', 'C08p50070' => 'bna', 'C08p50090' => 'bna', 'C09p38330' => 'bna', 'C09p53940' => 'bna', 'CAN.G1014.1' => 'can', 'CAN.G644.30' => 'can', 'CAN.G84.47' => 'can', 'CAN.G919.8' => 'can', 'CANSAT54G0113' => 'cansat', 'CANSAT54G1286' => 'cansat', 'CANSAT64G1020' => 'cansat', 'CARHR008080' => 'chi', 'CARHR008090' => 'chi', 'CARHR012130' => 'chi', 'CARHR038390' => 'chi', 'CARHR082330' => 'chi', 'CARHR120520' => 'chi', 'CARHR151470' => 'chi', 'CARHR190950' => 'chi', 'Carub.0001s0760' => 'cru', 'Carub.0001s1146' => 'cru', 'Carub.0003s0721' => 'cru', 'Carub.0004s0858' => 'cru', 'Carub.0005s1040' => 'cru', 'Carub.0006s2035' => 'cru', 'Carub.0015s0005' => 'cru', 'Ca_01607_v3' => 'car', 'Ca_01677_v3' => 'car', 'Ca_06087_v3' => 'car', 'Ca_19238_v3' => 'car', 'Ca_19373_v3' => 'car', 'Ca_21079_v3' => 'car', 'CBR_g54016' => 'cbr', 'CBR_g54018' => 'cbr', 'CBR_g54020' => 'cbr', 'Cc01_g09780' => 'ccan', 'Cc01_g11680' => 'ccan', 'Cc02_g15610' => 'ccan', 'Cc05_g04350' => 'ccan', 'Cc09_g01580' => 'ccan', 'CDE01G0795' => 'cde', 'CDE02G2024' => 'cde', 'CDE02G2260' => 'cde', 'CDE02G4561' => 'cde', 'CDE05G2733' => 'cde', 'CDE05G3422' => 'cde', 'CDE06G2003' => 'cde', 'CDE08G0576' => 'cde', 'CDE09G0048' => 'cde', 'CDE11G0805' => 'cde', 'Cfa003644' => 'cfa', 'Cfa006290' => 'cfa', 'Cfa010080' => 'cfa', 'Cfa011376' => 'cfa', 'Cfa011576' => 'cfa', 'Cfa011577' => 'cfa', 'Cfa014389' => 'cfa', 'Ciclev10006044m.g' => 'ccl', 'Ciclev10006954m.g' => 'ccl', 'Ciclev10015131m.g' => 'ccl', 'Ciclev10015580m.g' => 'ccl', 'Ciclev10028359m.g' => 'ccl', 'Ciclev10028573m.g' => 'ccl', 'CiPaw.03G159300' => 'cil', 'CiPaw.04G115100' => 'cil', 'CiPaw.09G092800' => 'cil', 'CiPaw.10G071800' => 'cil', 'CiPaw.13G105800' => 'cil', 'CiPaw.13G141000' => 'cil', 'CiPaw.14G103400' => 'cil', 'ClCG01G012700' => 'cla', 'ClCG01G012720' => 'cla', 'ClCG01G021920' => 'cla', 'ClCG02G008870' => 'cla', 'ClCG02G020840' => 'cla', 'ClCG02G021930' => 'cla', 'COL.COLO4_19302' => 'col', 'COL.COLO4_25262' => 'col', 'COL.COLO4_31788' => 'col', 'Cpa.g.c34684' => 'cpa', 'Cpa.g.c36520.1' => 'cpa', 'Cpa.g.c45626' => 'cpa', 'Cpa.g.sc121.17' => 'cpa', 'Cpa.g.sc13.22' => 'cpa', 'Cpa.g.sc87.88' => 'cpa', 'Cre06.g261800' => 'cre', 'CsaV3_1G014500' => 'csa', 'CsaV3_1G014510' => 'csa', 'CsaV3_2G034880' => 'csa', 'CsaV3_6G014760' => 'csa', 'CsaV3_6G021500' => 'csa', 'CsaV3_6G048980' => 'csa', 'CSS0002511' => 'camsi', 'CSS0007556' => 'camsi', 'CSS0008532' => 'camsi', 'CSS0009709' => 'camsi', 'CSS0010486' => 'camsi', 'CSS0016768' => 'camsi', 'CSS0023512' => 'camsi', 'CSS0025341' => 'camsi', 'CSS0027999' => 'camsi', 'CSS0028944' => 'camsi', 'CSS0032292' => 'camsi', 'CSS0032464' => 'camsi', 'CSS0037153' => 'camsi', 'CSS0039256' => 'camsi', 'CSS0048392' => 'camsi', 'CSS0050458' => 'camsi', 'DCAR_004224' => 'dca', 'DCAR_006147' => 'dca', 'DCAR_006465' => 'dca', 'DCAR_008159' => 'dca', 'DCAR_012164' => 'dca', 'DCAR_019764' => 'dca', 'Dinv05418' => 'din', 'Dinv10839' => 'din', 'Dinv12521' => 'din', 'Dinv13900' => 'din', 'Dinv29426' => 'din', 'Duzib150G0263' => 'dzi', 'Duzib168G1178' => 'dzi', 'Duzib168G1924' => 'dzi', 'Duzib170G0299' => 'dzi', 'Duzib170G0813' => 'dzi', 'Duzib235G1128' => 'dzi', 'Duzib248G1060' => 'dzi', 'ECA232G1910' => 'eca', 'ECA233G4621' => 'eca', 'ECA238G1216' => 'eca', 'ECA238G1784' => 'eca', 'ECA248G1242' => 'eca', 'EL10Ac8g20071' => 'bvu', 'EL10Ac9g21086' => 'bvu', 'EL10Ac9g22407' => 'bvu', 'EL10Ac9g22412' => 'bvu', 'Eucgr.A01119' => 'egr', 'Eucgr.E04043' => 'egr', 'Eucgr.J00428' => 'egr', 'Eucgr.J00958' => 'egr', 'FAN11G3091' => 'fan', 'FAN11G3651' => 'fan', 'FAN16G2566' => 'fan', 'FAN21G3155' => 'fan', 'FAN21G3400' => 'fan', 'FAN21G3543' => 'fan', 'FAN25G0234' => 'fan', 'FAN25G1422' => 'fan', 'FAN25G3392' => 'fan', 'FvH4_3g01940' => 'fve', 'FvH4_3g29870' => 'fve', 'FvH4_3g33680' => 'fve', 'Glyma.09G004200' => 'gma', 'Glyma.11G151288' => 'gma', 'Glyma.11G189100' => 'gma', 'Glyma.12G072500' => 'gma', 'Glyma.12G085500' => 'gma', 'Glyma.12G181800' => 'gma', 'Glyma.12G193000' => 'gma', 'Glyma.13G309300' => 'gma', 'Glyma.13G319000' => 'gma', 'Glyma.17G012600' => 'gma', 'Gohir.A06G148600' => 'ghi', 'Gohir.A07G115800' => 'ghi', 'Gohir.A08G003600' => 'ghi', 'Gohir.A09G093300' => 'ghi', 'Gohir.A09G105400' => 'ghi', 'Gohir.A09G105500' => 'ghi', 'Gohir.D06G154600' => 'ghi', 'Gohir.D07G120200' => 'ghi', 'Gohir.D08G013900' => 'ghi', 'Gohir.D09G093100' => 'ghi', 'Gohir.D09G102200' => 'ghi', 'Gohir.D09G102300' => 'ghi', 'Gorai.001G129400' => 'gra', 'Gorai.004G008200' => 'gra', 'Gorai.006G109800' => 'gra', 'Gorai.006G119500' => 'gra', 'Gorai.006G121300' => 'gra', 'Gorai.010G180700' => 'gra', 'GSVIVG01012716001' => 'vvi', 'GSVIVG01025118001' => 'vvi', 'GSVIVG01030439001' => 'vvi', 'GSVIVG01031397001' => 'vvi', 'HanXRQChr01g0004201' => 'han', 'HanXRQChr02g0054941' => 'han', 'HanXRQChr05g0141811' => 'han', 'HanXRQChr07g0197751' => 'han', 'HanXRQChr11g0346691' => 'han', 'HanXRQChr13g0396971' => 'han', 'HanXRQChr14g0432951' => 'han', 'HanXRQChr14g0452001' => 'han', 'HanXRQChr15g0496681' => 'han', 'HanXRQChr17g0557491' => 'han', 'HanXRQChr17g0557501' => 'han', 'Haze_06809' => 'cav', 'Haze_12852' => 'cav', 'Haze_15850' => 'cav', 'Haze_23446' => 'cav', 'Haze_23942' => 'cav', 'Haze_23943' => 'cav', 'Hma1.2p1_0091F.1_g046450' => 'hma', 'Hma1.2p1_0128F.1_g059910' => 'hma', 'Hma1.2p1_0249F.1_g102260' => 'hma', 'Hma1.2p1_0453F.1_g156190' => 'hma', 'Hma1.2p1_0695F.1_g204380' => 'hma', 'Hma1.2p1_0749F.1_g212650' => 'hma', 'Hma1.2p1_2156F.1_g315420' => 'hma', 'Hma1.2p1_2686F.1_g326940' => 'hma', 'HPP92_006428' => 'vpl', 'HPP92_012069' => 'vpl', 'HPP92_014129' => 'vpl', 'HPP92_014133' => 'vpl', 'HPP92_017315' => 'vpl', 'HPP92_026445' => 'vpl', 'HPP92_026446' => 'vpl', 'Hund00774' => 'sun', 'Hund07682' => 'sun', 'Hund21413' => 'sun', 'Hund23462' => 'sun', 'Hund23463' => 'sun', 'Lalb_Chr03g0027911' => 'lal', 'Lalb_Chr13g0304271' => 'lal', 'Lalb_Chr19g0137471' => 'lal', 'Lalb_Chr22g0350651' => 'lal', 'Lalb_Chr24g0395151' => 'lal', 'Lj1A1231T40' => 'lonja', 'Lj1A221T48' => 'lonja', 'Lj1C924T12' => 'lonja', 'Lj2C993G6' => 'lonja', 'Lj3g0005790' => 'lja', 'Lj3g0015432' => 'lja', 'Lj3g0017722' => 'lja', 'Lj3g0018497' => 'lja', 'Lj4g0025071' => 'lja', 'Lsat_1_v5_gn_1_129680' => 'lsa', 'Lsat_1_v5_gn_2_25321' => 'lsa', 'Lsat_1_v5_gn_2_95461' => 'lsa', 'Lsat_1_v5_gn_4_159620' => 'lsa', 'Lsat_1_v5_gn_6_41301' => 'lsa', 'Lsat_1_v5_gn_6_74660' => 'lsa', 'Lsat_1_v5_gn_7_11520' => 'lsa', 'Lsat_1_v5_gn_9_67680' => 'lsa', 'Manes.04G008300' => 'mes', 'Manes.04G008400' => 'mes', 'Manes.04G026500' => 'mes', 'Manes.10G135300' => 'mes', 'Manes.11G157300' => 'mes', 'Manes.12G074000' => 'mes', 'Manes.16G006200' => 'mes', 'Manes.17G026400' => 'mes', 'Mapoly0024s0086' => 'mpo', 'Mapoly0024s0087' => 'mpo', 'Mapoly0071s0057' => 'mpo', 'Mapoly0204s0012' => 'mpo', 'MBI04_g37681_MAGBIO' => 'mbi', 'MBI05_g17779_MAGBIO' => 'mbi', 'MBI12_g31184_MAGBIO' => 'mbi', 'MBI17_g11083_MAGBIO' => 'mbi', 'MBI18_g03883_MAGBIO' => 'mbi', 'MBI18_g28940_MAGBIO' => 'mbi', 'MCO01G690' => 'mco', 'MD03G1109900' => 'mdo', 'MD03G1134800' => 'mdo', 'MD05G1348000' => 'mdo', 'MD10G1322400' => 'mdo', 'MD11G1123300' => 'mdo', 'MD11G1157600' => 'mdo', 'Medtr2g084875' => 'mtr', 'Medtr2g088130' => 'mtr', 'Medtr4g055310' => 'mtr', 'Medtr4g061070' => 'mtr', 'Medtr4g132250' => 'mtr', 'MELO3C004795.2' => 'cme', 'MELO3C004797.2' => 'cme', 'MELO3C007396.2' => 'cme', 'MELO3C019277.2' => 'cme', 'MELO3C021449.2' => 'cme', 'MELO3C025736.2' => 'cme', 'Migut.D02175' => 'egut', 'Migut.H01573' => 'egut', 'Migut.M01327' => 'egut', 'Migut.N02513' => 'egut', 'MSTRG.14638' => 'ama', 'MSTRG.18632' => 'ama', 'MSTRG.7203' => 'ama', 'Nitab4.5_0000533g0140' => 'nta', 'Nitab4.5_0000888g0150' => 'nta', 'Nitab4.5_0001453g0040' => 'nta', 'Nitab4.5_0002827g0090' => 'nta', 'Nitab4.5_0003082g0040' => 'nta', 'Nitab4.5_0007799g0040' => 'nta', 'Nitab4.5_0008983g0010' => 'nta', 'Nitab4.5_0009017g0020' => 'nta', 'Nn1g02132' => 'nnu', 'Nn1g03492' => 'nnu', 'Nn1g03493' => 'nnu', 'Nn1g03494' => 'nnu', 'Nn1g07164' => 'nnu', 'Nn1g07291' => 'nnu', 'Nn2g10655' => 'nnu', 'Nn2g11652' => 'nnu', 'Nn2g14008' => 'nnu', 'Nn3g17476' => 'nnu', 'Nn3g17477' => 'nnu', 'Nn4g22370' => 'nnu', 'Nn4g25255' => 'nnu', 'Nn5g27755' => 'nnu', 'Nn6g34260' => 'nnu', 'Nn6g35041' => 'nnu', 'Oeu005924.1' => 'oeu', 'Oeu008383.1' => 'oeu', 'Oeu014928.1' => 'oeu', 'Oeu019889.1' => 'oeu', 'Oeu022271.1' => 'oeu', 'Oeu025271.1' => 'oeu', 'Oeu036302.1' => 'oeu', 'Oeu044100.1' => 'oeu', 'Os01g0528300' => 'osa', 'Os03g0286200' => 'osa', 'Os04g0406600' => 'osa', 'Os07g0512000' => 'osa', 'Os07g0694600' => 'osa', 'Os08g0411000' => 'osa', 'Os09g0565700' => 'osa', 'Os09g0566050' => 'osa', 'Os10g0523700' => 'osa', 'Peaxi162Scf00002g00514' => 'pax', 'Peaxi162Scf00047g01817' => 'pax', 'Peaxi162Scf00114g00001' => 'pax', 'Peaxi162Scf00147g00613' => 'pax', 'Peaxi162Scf00389g00425' => 'pax', 'PGR042G1139' => 'pgr', 'PGR042G3273' => 'pgr', 'PGR102G2180' => 'pgr', 'PGR119G0234' => 'pgr', 'PGR119G0668' => 'pgr', 'PGSC0003DMG400007122' => 'stu', 'PGSC0003DMG400016478' => 'stu', 'PGSC0003DMG400025374' => 'stu', 'PGSC0003DMG400026536' => 'stu', 'Phvul.003G079600' => 'pvu', 'Phvul.005G115600' => 'pvu', 'Phvul.005G127100' => 'pvu', 'Phvul.006G149500' => 'pvu', 'Phvul.006G149600' => 'pvu', 'Phvul.011G071800' => 'pvu', 'Phvul.011G090400' => 'pvu', 'Potri.004G013400' => 'ptr', 'Potri.004G188100' => 'ptr', 'Potri.008G195500' => 'ptr', 'Potri.009G148800' => 'ptr', 'Potri.011G004700' => 'ptr', 'Pp3c17_22810' => 'ppa', 'Pp3c18_4480' => 'ppa', 'Pp3c19_13030' => 'ppa', 'Pp3c1_33620' => 'ppa', 'Pp3c2_9380' => 'ppa', 'PRCOL_00001023' => 'pco', 'Prupe.3G216300' => 'ppe', 'Prupe.4G019500' => 'ppe', 'Prupe.6G092500' => 'ppe', 'Prupe.6G119200' => 'ppe', 'Psat0s1945g0080' => 'psa', 'Psat0s4167g0040' => 'psa', 'Psat1g185800' => 'psa', 'Psat4g006440' => 'psa', 'Psat4g006480' => 'psa', 'Psat4g168120' => 'psa', 'Psat5g255680' => 'psa', 'Psat5g261760' => 'psa', 'Psat7g222120' => 'psa', 'PSO063G7252' => 'pso', 'PSO170G4778' => 'pso', 'PSO210G2249' => 'pso', 'PSO339G2411' => 'pso', 'PSO339G2457' => 'pso', 'PSO339G2854' => 'pso', 'PSO339G4288' => 'pso', 'PSO339G4615' => 'pso', 'PSO384G2796' => 'pso', 'PSO384G2940' => 'pso', 'PSO384G4227' => 'pso', 'PSO478G1425' => 'pso', 'PSO541G3863' => 'pso', 'PSO675G0507' => 'pso', 'PSO782G0338' => 'pso', 'PSO832G0644' => 'pso', 'QL01p013664' => 'qlo', 'QL01p036598' => 'qlo', 'QL05p072984' => 'qlo', 'QL08p005768' => 'qlo', 'QL08p032743' => 'qlo', 'QL93p0073_0439' => 'qlo', 'QL93p0073_0444' => 'qlo', 'RcHm_v2.0_Chr5g0002851' => 'rch', 'RcHm_v2.0_Chr5g0055201' => 'rch', 'RcHm_v2.0_Chr5g0061191' => 'rch', 'RcHm_v2.0_Chr7g0203231' => 'rch', 'Rhsim01G0208100' => 'rsi', 'Rhsim01G0208200' => 'rsi', 'Rhsim02G0106500' => 'rsi', 'Rhsim03G0107900' => 'rsi', 'Rhsim06G0163400' => 'rsi', 'Rhsim13G0105200' => 'rsi', 'Sabra04G0006300' => 'sbr', 'Sabra04G0127000' => 'sbr', 'Sabra08G0148700' => 'sbr', 'Sabra09G0117400' => 'sbr', 'SalBow1G3326' => 'sbo', 'SalBow3G3228' => 'sbo', 'SalBow6G1634' => 'sbo', 'SalBow6G3603' => 'sbo', 'SalBow6G5266' => 'sbo', 'SalBow7G2265' => 'sbo', 'SalBow8G0850' => 'sbo', 'SalBow8G2592' => 'sbo', 'Sc05g0009240' => 'sci', 'Sc12g0002300' => 'sci', 'Sc21g0000100' => 'sci', 'Sc21g0004720' => 'sci', 'Sed0002949' => 'sed', 'Sed0004114' => 'sed', 'Sed0004306' => 'sed', 'Sed0006172' => 'sed', 'Sed0008413' => 'sed', 'Sed0013809' => 'sed', 'Sed0019556' => 'sed', 'SEGI_03570' => 'sgi', 'SEGI_07859' => 'sgi', 'SEGI_15042' => 'sgi', 'SEGI_16263' => 'sgi', 'SEGI_16552' => 'sgi', 'SEGI_24331' => 'sgi', 'SEGI_27316' => 'sgi', 'SEGI_29521' => 'sgi', 'SEGI_41342' => 'sgi', 'SGA_v2.0_scaffold27G11617' => 'sas', 'SGA_v2.0_scaffold316G48428' => 'sas', 'SGA_v2.0_scaffold49G18261' => 'sas', 'SGA_v2.0_scaffold7G03831' => 'sas', 'SGA_v2.0_scaffold93G28359' => 'sas', 'SHI02210' => 'shi', 'SHI06028' => 'shi', 'SHI06321' => 'shi', 'SMO111G0012' => 'smo', 'SMO228G0080' => 'smo', 'SMO356G0756' => 'smo', 'Solyc02g080620.3' => 'sly', 'Solyc06g074530.1' => 'sly', 'Solyc11g066890.1' => 'sly', 'Solyc11g072520.3' => 'sly', 'Sopen02g025330' => 'spe', 'Sopen06g031000' => 'spe', 'Sopen09g008240' => 'spe', 'Sopen09g025210' => 'spe', 'Sopen11g026600' => 'spe', 'Sopen11g030170' => 'spe', 'Sp1g10420' => 'spa', 'Sp3g06570' => 'spa', 'Sp4g10660' => 'spa', 'Sp5g16460' => 'spa', 'Sp6g22710' => 'spa', 'TAR365G0112' => 'tar', 'TAR369G0717' => 'tar', 'TAR374G0976' => 'tar', 'TAR623G1128' => 'tar', 'TAR626G1937' => 'tar', 'TAR627G0123' => 'tar', 'TAR628G0305' => 'tar', 'TAR636G1176' => 'tar', 'TAR636G2442' => 'tar', 'THA.LOC104800556' => 'tha', 'THA.LOC104809501' => 'tha', 'THA.LOC104815126' => 'tha', 'THA.LOC104815732' => 'tha', 'THA.LOC104823528' => 'tha', 'Thecc.02G365600' => 'tca', 'Thecc.06G222300' => 'tca', 'Thecc.09G261800' => 'tca', 'Thecc.09G291400' => 'tca', 'Thhalv10003028m.g' => 'esa', 'Thhalv10007886m.g' => 'esa', 'Thhalv10016085m.g' => 'esa', 'Thhalv10016681m.g' => 'esa', 'Thhalv10020951m.g' => 'esa', 'TPR.G15598' => 'tpr', 'TPR.G29305' => 'tpr', 'TPR.G32395' => 'tpr', 'TPR.G36998' => 'tpr', 'TPR.G4227' => 'tpr', 'TWI18G1433' => 'twi', 'TWI31G0755' => 'twi', 'TWI38G0912' => 'twi', 'TWI75G1097' => 'twi', 'TWI75G1619' => 'twi', 'TWI79G1336' => 'twi', 'unitig_0.g943' => 'ugi', 'unitig_0.g944' => 'ugi', 'unitig_22.g6646' => 'ugi', 'unitig_37.g12681' => 'ugi', 'unitig_8.g3290' => 'ugi', 'vmacro03278' => 'vma', 'vmacro12197' => 'vma', 'vmacro14478' => 'vma', 'vmacro15787' => 'vma', 'vmacro15789' => 'vma', 'vmacro15790' => 'vma', 'vmacro15806' => 'vma', 'vmacro22907' => 'vma', 'vmacro22908' => 'vma', 'vmacro22909' => 'vma', 'vmacro23108' => 'vma', 'VMungo0540G0540' => 'vmu', 'VMungo0540G2468' => 'vmu', 'VMungo1080G0390' => 'vmu', 'VMungo1080G1165' => 'vmu', 'VMungo1127G0170' => 'vmu', 'VMungo1127G2099' => 'vmu', 'VMungo1215G3013' => 'vmu', 'Zm00001eb013110' => 'zma', 'Zm00001eb084260' => 'zma', 'Zm00001eb096110' => 'zma', 'Zm00001eb217510' => 'zma', 'Zm00001eb322550' => 'zma', 'Zm00001eb390770' => 'zma', 'Zm00001eb397170' => 'zma', 'Zm00001eb404610' => 'zma', 'Zm00001eb421790' => 'zma' ) $gf_id = 'HOM05D000911' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000911' ) $data_identifier = 'HOM05D000911' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 16, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 5, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 6, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 8, 'nnu' => (int) 16, 'oeu' => (int) 8, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 5, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 16, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421790' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000911', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27780' => 'bna', 'A03p35380' => 'bna', 'A04p21160' => 'bna', 'A05p40570' => 'bna', 'A06p26900' => 'bna', 'A08p33230' => 'bna', 'A09p65960' => 'bna', 'A10p18290' => 'bna', 'Aa31LG1G12990' => 'aar', 'Aa31LG1G2980' => 'aar', 'Aa31LG4G14320' => 'aar', 'Aa31LG7G11800' => 'aar', 'Aa31sc36G50' => 'aar', 'Aa31sc36G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3721' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5459' => 'aag', 'Actinidia03028' => 'ach', 'Actinidia03753' => 'ach', 'Actinidia04187' => 'ach', 'Actinidia05509' => 'ach', 'Actinidia24180' => 'ach', 'Actinidia26906' => 'ach', 'Actinidia37097' => 'ach', 'Actinidia38249' => 'ach', 'Ah.01g003470' => 'amhyb', 'Ah.01g004580' => 'amhyb', 'Ah.01g014850' => 'amhyb', 'Ah.01g016830' => 'amhyb', 'Ah.14g088000' => 'amhyb', 'AL1G22980' => 'aly', 'AL3G18990' => 'aly', 'AL4G22440' => 'aly', 'AL4G33180' => 'aly', 'AL5G22920' => 'aly', 'AL6G33660' => 'aly', 'AL8G20720' => 'aly', 'Aqoxy1G00935' => 'aox', 'Aqoxy1G02094' => 'aox', 'Aqoxy2G01239' => 'aox', 'Aqoxy4G01870' => 'aox', 'Aqoxy7G00450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.36ZVTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71EM27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5D6C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH3WRE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3NCM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RIM768' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YB5YRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z36GDV' => 'arhy', 'AT1G08250' => 'ath', 'AT1G11790' => 'ath', 'AT2G27820' => 'ath', 'AT3G07630' => 'ath', 'AT3G44720' => 'ath', 'AT5G22630' => 'ath', 'ATR0693G304' => 'atr', 'ATR0794G109' => 'atr', 'ATR0820G120' => 'atr', 'ATR1159G064' => 'atr', 'Atru.chr10.2239' => 'acertr', 'Atru.chr3.3371' => 'acertr', 'Atru.chr6.3202' => 'acertr', 'AUR62006499' => 'cqu', 'AUR62012718' => 'cqu', 'AUR62021938' => 'cqu', 'AUR62023932' => 'cqu', 'AUR62025034' => 'cqu', 'AUR62025035' => 'cqu', 'AUR62038307' => 'cqu', 'AUR62043466' => 'cqu', 'BcaB02g10748' => 'bca', 'BcaB03g13231' => 'bca', 'BcaB03g14689' => 'bca', 'BcaB05g22716' => 'bca', 'BcaB06g28172' => 'bca', 'BcaB08g36413' => 'bca', 'BcaC01g02186' => 'bca', 'BcaC01g04272' => 'bca', 'BcaC02g08080' => 'bca', 'BcaC02g08227' => 'bca', 'BcaC03g13901' => 'bca', 'BcaC04g19593' => 'bca', 'BcaC04g20874' => 'bca', 'BcaC05g29557' => 'bca', 'BcaC06g35505' => 'bca', 'BcaC07g41954' => 'bca', 'BcaC07g41955' => 'bca', 'BcaC07g41956' => 'bca', 'BcaC07g42519' => 'bca', 'BcaC07g42520' => 'bca', 'BcaC07g42523' => 'bca', 'BcaC07g42524' => 'bca', 'BcaC07g42525' => 'bca', 'BcaC08g47480' => 'bca', 'BcaC08g47481' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00530' => 'bna', 'BolC2t07178H' => 'bol', 'BolC3t16567H' => 'bol', 'BolC4t27234H' => 'bol', 'BolC5t29728H' => 'bol', 'BolC5t34622H' => 'bol', 'BolC6t40321H' => 'bol', 'BolC7t42028H' => 'bol', 'BolC8t49125H' => 'bol', 'BolC8t52538H' => 'bol', 'BolC8t52539H' => 'bol', 'BolC9t56681H' => 'bol', 'BolC9t58266H' => 'bol', 'BolSC21t60294H' => 'bol', 'BraA02t05670Z' => 'bra', 'BraA03t12716Z' => 'bra', 'BraA04t17685Z' => 'bra', 'BraA05t22788Z' => 'bra', 'BraA06t24032Z' => 'bra', 'BraA06t25625Z' => 'bra', 'BraA07t27930Z' => 'bra', 'BraA08t35242Z' => 'bra', 'BraA09t38609Z' => 'bra', 'BraA10t43905Z' => 'bra', 'C02p11060' => 'bna', 'C03p42990' => 'bna', 'C03p67310' => 'bna', 'C04p56990' => 'bna', 'C04p58660' => 'bna', 'C05p09890' => 'bna', 'C05p59680' => 'bna', 'C06p19830' => 'bna', 'C06p53040' => 'bna', 'C07p15230' => 'bna', 'C08p50070' => 'bna', 'C08p50090' => 'bna', 'C09p38330' => 'bna', 'C09p53940' => 'bna', 'CAN.G1014.1' => 'can', 'CAN.G644.30' => 'can', 'CAN.G84.47' => 'can', 'CAN.G919.8' => 'can', 'CANSAT54G0113' => 'cansat', 'CANSAT54G1286' => 'cansat', 'CANSAT64G1020' => 'cansat', 'CARHR008080' => 'chi', 'CARHR008090' => 'chi', 'CARHR012130' => 'chi', 'CARHR038390' => 'chi', 'CARHR082330' => 'chi', 'CARHR120520' => 'chi', 'CARHR151470' => 'chi', 'CARHR190950' => 'chi', 'Carub.0001s0760' => 'cru', 'Carub.0001s1146' => 'cru', 'Carub.0003s0721' => 'cru', 'Carub.0004s0858' => 'cru', 'Carub.0005s1040' => 'cru', 'Carub.0006s2035' => 'cru', 'Carub.0015s0005' => 'cru', 'Ca_01607_v3' => 'car', 'Ca_01677_v3' => 'car', 'Ca_06087_v3' => 'car', 'Ca_19238_v3' => 'car', 'Ca_19373_v3' => 'car', 'Ca_21079_v3' => 'car', 'CBR_g54016' => 'cbr', 'CBR_g54018' => 'cbr', 'CBR_g54020' => 'cbr', 'Cc01_g09780' => 'ccan', 'Cc01_g11680' => 'ccan', 'Cc02_g15610' => 'ccan', 'Cc05_g04350' => 'ccan', 'Cc09_g01580' => 'ccan', 'CDE01G0795' => 'cde', 'CDE02G2024' => 'cde', 'CDE02G2260' => 'cde', 'CDE02G4561' => 'cde', 'CDE05G2733' => 'cde', 'CDE05G3422' => 'cde', 'CDE06G2003' => 'cde', 'CDE08G0576' => 'cde', 'CDE09G0048' => 'cde', 'CDE11G0805' => 'cde', 'Cfa003644' => 'cfa', 'Cfa006290' => 'cfa', 'Cfa010080' => 'cfa', 'Cfa011376' => 'cfa', 'Cfa011576' => 'cfa', 'Cfa011577' => 'cfa', 'Cfa014389' => 'cfa', 'Ciclev10006044m.g' => 'ccl', 'Ciclev10006954m.g' => 'ccl', 'Ciclev10015131m.g' => 'ccl', 'Ciclev10015580m.g' => 'ccl', 'Ciclev10028359m.g' => 'ccl', 'Ciclev10028573m.g' => 'ccl', 'CiPaw.03G159300' => 'cil', 'CiPaw.04G115100' => 'cil', 'CiPaw.09G092800' => 'cil', 'CiPaw.10G071800' => 'cil', 'CiPaw.13G105800' => 'cil', 'CiPaw.13G141000' => 'cil', 'CiPaw.14G103400' => 'cil', 'ClCG01G012700' => 'cla', 'ClCG01G012720' => 'cla', 'ClCG01G021920' => 'cla', 'ClCG02G008870' => 'cla', 'ClCG02G020840' => 'cla', 'ClCG02G021930' => 'cla', 'COL.COLO4_19302' => 'col', 'COL.COLO4_25262' => 'col', 'COL.COLO4_31788' => 'col', 'Cpa.g.c34684' => 'cpa', 'Cpa.g.c36520.1' => 'cpa', 'Cpa.g.c45626' => 'cpa', 'Cpa.g.sc121.17' => 'cpa', 'Cpa.g.sc13.22' => 'cpa', 'Cpa.g.sc87.88' => 'cpa', 'Cre06.g261800' => 'cre', 'CsaV3_1G014500' => 'csa', 'CsaV3_1G014510' => 'csa', 'CsaV3_2G034880' => 'csa', 'CsaV3_6G014760' => 'csa', 'CsaV3_6G021500' => 'csa', 'CsaV3_6G048980' => 'csa', 'CSS0002511' => 'camsi', 'CSS0007556' => 'camsi', 'CSS0008532' => 'camsi', 'CSS0009709' => 'camsi', 'CSS0010486' => 'camsi', 'CSS0016768' => 'camsi', 'CSS0023512' => 'camsi', 'CSS0025341' => 'camsi', 'CSS0027999' => 'camsi', 'CSS0028944' => 'camsi', 'CSS0032292' => 'camsi', 'CSS0032464' => 'camsi', 'CSS0037153' => 'camsi', 'CSS0039256' => 'camsi', 'CSS0048392' => 'camsi', 'CSS0050458' => 'camsi', 'DCAR_004224' => 'dca', 'DCAR_006147' => 'dca', 'DCAR_006465' => 'dca', 'DCAR_008159' => 'dca', 'DCAR_012164' => 'dca', 'DCAR_019764' => 'dca', 'Dinv05418' => 'din', 'Dinv10839' => 'din', 'Dinv12521' => 'din', 'Dinv13900' => 'din', 'Dinv29426' => 'din', 'Duzib150G0263' => 'dzi', 'Duzib168G1178' => 'dzi', 'Duzib168G1924' => 'dzi', 'Duzib170G0299' => 'dzi', 'Duzib170G0813' => 'dzi', 'Duzib235G1128' => 'dzi', 'Duzib248G1060' => 'dzi', 'ECA232G1910' => 'eca', 'ECA233G4621' => 'eca', 'ECA238G1216' => 'eca', 'ECA238G1784' => 'eca', 'ECA248G1242' => 'eca', 'EL10Ac8g20071' => 'bvu', 'EL10Ac9g21086' => 'bvu', 'EL10Ac9g22407' => 'bvu', 'EL10Ac9g22412' => 'bvu', 'Eucgr.A01119' => 'egr', 'Eucgr.E04043' => 'egr', 'Eucgr.J00428' => 'egr', 'Eucgr.J00958' => 'egr', 'FAN11G3091' => 'fan', 'FAN11G3651' => 'fan', 'FAN16G2566' => 'fan', 'FAN21G3155' => 'fan', 'FAN21G3400' => 'fan', 'FAN21G3543' => 'fan', 'FAN25G0234' => 'fan', 'FAN25G1422' => 'fan', 'FAN25G3392' => 'fan', 'FvH4_3g01940' => 'fve', 'FvH4_3g29870' => 'fve', 'FvH4_3g33680' => 'fve', 'Glyma.09G004200' => 'gma', 'Glyma.11G151288' => 'gma', 'Glyma.11G189100' => 'gma', 'Glyma.12G072500' => 'gma', 'Glyma.12G085500' => 'gma', 'Glyma.12G181800' => 'gma', 'Glyma.12G193000' => 'gma', 'Glyma.13G309300' => 'gma', 'Glyma.13G319000' => 'gma', 'Glyma.17G012600' => 'gma', 'Gohir.A06G148600' => 'ghi', 'Gohir.A07G115800' => 'ghi', 'Gohir.A08G003600' => 'ghi', 'Gohir.A09G093300' => 'ghi', 'Gohir.A09G105400' => 'ghi', 'Gohir.A09G105500' => 'ghi', 'Gohir.D06G154600' => 'ghi', 'Gohir.D07G120200' => 'ghi', 'Gohir.D08G013900' => 'ghi', 'Gohir.D09G093100' => 'ghi', 'Gohir.D09G102200' => 'ghi', 'Gohir.D09G102300' => 'ghi', 'Gorai.001G129400' => 'gra', 'Gorai.004G008200' => 'gra', 'Gorai.006G109800' => 'gra', 'Gorai.006G119500' => 'gra', 'Gorai.006G121300' => 'gra', 'Gorai.010G180700' => 'gra', 'GSVIVG01012716001' => 'vvi', 'GSVIVG01025118001' => 'vvi', 'GSVIVG01030439001' => 'vvi', 'GSVIVG01031397001' => 'vvi', 'HanXRQChr01g0004201' => 'han', 'HanXRQChr02g0054941' => 'han', 'HanXRQChr05g0141811' => 'han', 'HanXRQChr07g0197751' => 'han', 'HanXRQChr11g0346691' => 'han', 'HanXRQChr13g0396971' => 'han', 'HanXRQChr14g0432951' => 'han', 'HanXRQChr14g0452001' => 'han', 'HanXRQChr15g0496681' => 'han', 'HanXRQChr17g0557491' => 'han', 'HanXRQChr17g0557501' => 'han', 'Haze_06809' => 'cav', 'Haze_12852' => 'cav', 'Haze_15850' => 'cav', 'Haze_23446' => 'cav', 'Haze_23942' => 'cav', 'Haze_23943' => 'cav', 'Hma1.2p1_0091F.1_g046450' => 'hma', 'Hma1.2p1_0128F.1_g059910' => 'hma', 'Hma1.2p1_0249F.1_g102260' => 'hma', 'Hma1.2p1_0453F.1_g156190' => 'hma', 'Hma1.2p1_0695F.1_g204380' => 'hma', 'Hma1.2p1_0749F.1_g212650' => 'hma', 'Hma1.2p1_2156F.1_g315420' => 'hma', 'Hma1.2p1_2686F.1_g326940' => 'hma', 'HPP92_006428' => 'vpl', 'HPP92_012069' => 'vpl', 'HPP92_014129' => 'vpl', 'HPP92_014133' => 'vpl', 'HPP92_017315' => 'vpl', 'HPP92_026445' => 'vpl', 'HPP92_026446' => 'vpl', 'Hund00774' => 'sun', 'Hund07682' => 'sun', 'Hund21413' => 'sun', 'Hund23462' => 'sun', 'Hund23463' => 'sun', 'Lalb_Chr03g0027911' => 'lal', 'Lalb_Chr13g0304271' => 'lal', 'Lalb_Chr19g0137471' => 'lal', 'Lalb_Chr22g0350651' => 'lal', 'Lalb_Chr24g0395151' => 'lal', 'Lj1A1231T40' => 'lonja', 'Lj1A221T48' => 'lonja', 'Lj1C924T12' => 'lonja', 'Lj2C993G6' => 'lonja', 'Lj3g0005790' => 'lja', 'Lj3g0015432' => 'lja', 'Lj3g0017722' => 'lja', 'Lj3g0018497' => 'lja', 'Lj4g0025071' => 'lja', 'Lsat_1_v5_gn_1_129680' => 'lsa', 'Lsat_1_v5_gn_2_25321' => 'lsa', 'Lsat_1_v5_gn_2_95461' => 'lsa', 'Lsat_1_v5_gn_4_159620' => 'lsa', 'Lsat_1_v5_gn_6_41301' => 'lsa', 'Lsat_1_v5_gn_6_74660' => 'lsa', 'Lsat_1_v5_gn_7_11520' => 'lsa', 'Lsat_1_v5_gn_9_67680' => 'lsa', 'Manes.04G008300' => 'mes', 'Manes.04G008400' => 'mes', 'Manes.04G026500' => 'mes', 'Manes.10G135300' => 'mes', 'Manes.11G157300' => 'mes', 'Manes.12G074000' => 'mes', 'Manes.16G006200' => 'mes', 'Manes.17G026400' => 'mes', 'Mapoly0024s0086' => 'mpo', 'Mapoly0024s0087' => 'mpo', 'Mapoly0071s0057' => 'mpo', 'Mapoly0204s0012' => 'mpo', 'MBI04_g37681_MAGBIO' => 'mbi', 'MBI05_g17779_MAGBIO' => 'mbi', 'MBI12_g31184_MAGBIO' => 'mbi', 'MBI17_g11083_MAGBIO' => 'mbi', 'MBI18_g03883_MAGBIO' => 'mbi', 'MBI18_g28940_MAGBIO' => 'mbi', 'MCO01G690' => 'mco', 'MD03G1109900' => 'mdo', 'MD03G1134800' => 'mdo', 'MD05G1348000' => 'mdo', 'MD10G1322400' => 'mdo', 'MD11G1123300' => 'mdo', 'MD11G1157600' => 'mdo', 'Medtr2g084875' => 'mtr', 'Medtr2g088130' => 'mtr', 'Medtr4g055310' => 'mtr', 'Medtr4g061070' => 'mtr', 'Medtr4g132250' => 'mtr', 'MELO3C004795.2' => 'cme', 'MELO3C004797.2' => 'cme', 'MELO3C007396.2' => 'cme', 'MELO3C019277.2' => 'cme', 'MELO3C021449.2' => 'cme', 'MELO3C025736.2' => 'cme', 'Migut.D02175' => 'egut', 'Migut.H01573' => 'egut', 'Migut.M01327' => 'egut', 'Migut.N02513' => 'egut', 'MSTRG.14638' => 'ama', 'MSTRG.18632' => 'ama', 'MSTRG.7203' => 'ama', 'Nitab4.5_0000533g0140' => 'nta', 'Nitab4.5_0000888g0150' => 'nta', 'Nitab4.5_0001453g0040' => 'nta', 'Nitab4.5_0002827g0090' => 'nta', 'Nitab4.5_0003082g0040' => 'nta', 'Nitab4.5_0007799g0040' => 'nta', 'Nitab4.5_0008983g0010' => 'nta', 'Nitab4.5_0009017g0020' => 'nta', 'Nn1g02132' => 'nnu', 'Nn1g03492' => 'nnu', 'Nn1g03493' => 'nnu', 'Nn1g03494' => 'nnu', 'Nn1g07164' => 'nnu', 'Nn1g07291' => 'nnu', 'Nn2g10655' => 'nnu', 'Nn2g11652' => 'nnu', 'Nn2g14008' => 'nnu', 'Nn3g17476' => 'nnu', 'Nn3g17477' => 'nnu', 'Nn4g22370' => 'nnu', 'Nn4g25255' => 'nnu', 'Nn5g27755' => 'nnu', 'Nn6g34260' => 'nnu', 'Nn6g35041' => 'nnu', 'Oeu005924.1' => 'oeu', 'Oeu008383.1' => 'oeu', 'Oeu014928.1' => 'oeu', 'Oeu019889.1' => 'oeu', 'Oeu022271.1' => 'oeu', 'Oeu025271.1' => 'oeu', 'Oeu036302.1' => 'oeu', 'Oeu044100.1' => 'oeu', 'Os01g0528300' => 'osa', 'Os03g0286200' => 'osa', 'Os04g0406600' => 'osa', 'Os07g0512000' => 'osa', 'Os07g0694600' => 'osa', 'Os08g0411000' => 'osa', 'Os09g0565700' => 'osa', 'Os09g0566050' => 'osa', 'Os10g0523700' => 'osa', 'Peaxi162Scf00002g00514' => 'pax', 'Peaxi162Scf00047g01817' => 'pax', 'Peaxi162Scf00114g00001' => 'pax', 'Peaxi162Scf00147g00613' => 'pax', 'Peaxi162Scf00389g00425' => 'pax', 'PGR042G1139' => 'pgr', 'PGR042G3273' => 'pgr', 'PGR102G2180' => 'pgr', 'PGR119G0234' => 'pgr', 'PGR119G0668' => 'pgr', 'PGSC0003DMG400007122' => 'stu', 'PGSC0003DMG400016478' => 'stu', 'PGSC0003DMG400025374' => 'stu', 'PGSC0003DMG400026536' => 'stu', 'Phvul.003G079600' => 'pvu', 'Phvul.005G115600' => 'pvu', 'Phvul.005G127100' => 'pvu', 'Phvul.006G149500' => 'pvu', 'Phvul.006G149600' => 'pvu', 'Phvul.011G071800' => 'pvu', 'Phvul.011G090400' => 'pvu', 'Potri.004G013400' => 'ptr', 'Potri.004G188100' => 'ptr', 'Potri.008G195500' => 'ptr', 'Potri.009G148800' => 'ptr', 'Potri.011G004700' => 'ptr', 'Pp3c17_22810' => 'ppa', 'Pp3c18_4480' => 'ppa', 'Pp3c19_13030' => 'ppa', 'Pp3c1_33620' => 'ppa', 'Pp3c2_9380' => 'ppa', 'PRCOL_00001023' => 'pco', 'Prupe.3G216300' => 'ppe', 'Prupe.4G019500' => 'ppe', 'Prupe.6G092500' => 'ppe', 'Prupe.6G119200' => 'ppe', 'Psat0s1945g0080' => 'psa', 'Psat0s4167g0040' => 'psa', 'Psat1g185800' => 'psa', 'Psat4g006440' => 'psa', 'Psat4g006480' => 'psa', 'Psat4g168120' => 'psa', 'Psat5g255680' => 'psa', 'Psat5g261760' => 'psa', 'Psat7g222120' => 'psa', 'PSO063G7252' => 'pso', 'PSO170G4778' => 'pso', 'PSO210G2249' => 'pso', 'PSO339G2411' => 'pso', 'PSO339G2457' => 'pso', 'PSO339G2854' => 'pso', 'PSO339G4288' => 'pso', 'PSO339G4615' => 'pso', 'PSO384G2796' => 'pso', 'PSO384G2940' => 'pso', 'PSO384G4227' => 'pso', 'PSO478G1425' => 'pso', 'PSO541G3863' => 'pso', 'PSO675G0507' => 'pso', 'PSO782G0338' => 'pso', 'PSO832G0644' => 'pso', 'QL01p013664' => 'qlo', 'QL01p036598' => 'qlo', 'QL05p072984' => 'qlo', 'QL08p005768' => 'qlo', 'QL08p032743' => 'qlo', 'QL93p0073_0439' => 'qlo', 'QL93p0073_0444' => 'qlo', 'RcHm_v2.0_Chr5g0002851' => 'rch', 'RcHm_v2.0_Chr5g0055201' => 'rch', 'RcHm_v2.0_Chr5g0061191' => 'rch', 'RcHm_v2.0_Chr7g0203231' => 'rch', 'Rhsim01G0208100' => 'rsi', 'Rhsim01G0208200' => 'rsi', 'Rhsim02G0106500' => 'rsi', 'Rhsim03G0107900' => 'rsi', 'Rhsim06G0163400' => 'rsi', 'Rhsim13G0105200' => 'rsi', 'Sabra04G0006300' => 'sbr', 'Sabra04G0127000' => 'sbr', 'Sabra08G0148700' => 'sbr', 'Sabra09G0117400' => 'sbr', 'SalBow1G3326' => 'sbo', 'SalBow3G3228' => 'sbo', 'SalBow6G1634' => 'sbo', 'SalBow6G3603' => 'sbo', 'SalBow6G5266' => 'sbo', 'SalBow7G2265' => 'sbo', 'SalBow8G0850' => 'sbo', 'SalBow8G2592' => 'sbo', 'Sc05g0009240' => 'sci', 'Sc12g0002300' => 'sci', 'Sc21g0000100' => 'sci', 'Sc21g0004720' => 'sci', 'Sed0002949' => 'sed', 'Sed0004114' => 'sed', 'Sed0004306' => 'sed', 'Sed0006172' => 'sed', 'Sed0008413' => 'sed', 'Sed0013809' => 'sed', 'Sed0019556' => 'sed', 'SEGI_03570' => 'sgi', 'SEGI_07859' => 'sgi', 'SEGI_15042' => 'sgi', 'SEGI_16263' => 'sgi', 'SEGI_16552' => 'sgi', 'SEGI_24331' => 'sgi', 'SEGI_27316' => 'sgi', 'SEGI_29521' => 'sgi', 'SEGI_41342' => 'sgi', 'SGA_v2.0_scaffold27G11617' => 'sas', 'SGA_v2.0_scaffold316G48428' => 'sas', 'SGA_v2.0_scaffold49G18261' => 'sas', 'SGA_v2.0_scaffold7G03831' => 'sas', 'SGA_v2.0_scaffold93G28359' => 'sas', 'SHI02210' => 'shi', 'SHI06028' => 'shi', 'SHI06321' => 'shi', 'SMO111G0012' => 'smo', 'SMO228G0080' => 'smo', 'SMO356G0756' => 'smo', 'Solyc02g080620.3' => 'sly', 'Solyc06g074530.1' => 'sly', 'Solyc11g066890.1' => 'sly', 'Solyc11g072520.3' => 'sly', 'Sopen02g025330' => 'spe', 'Sopen06g031000' => 'spe', 'Sopen09g008240' => 'spe', 'Sopen09g025210' => 'spe', 'Sopen11g026600' => 'spe', 'Sopen11g030170' => 'spe', 'Sp1g10420' => 'spa', 'Sp3g06570' => 'spa', 'Sp4g10660' => 'spa', 'Sp5g16460' => 'spa', 'Sp6g22710' => 'spa', 'TAR365G0112' => 'tar', 'TAR369G0717' => 'tar', 'TAR374G0976' => 'tar', 'TAR623G1128' => 'tar', 'TAR626G1937' => 'tar', 'TAR627G0123' => 'tar', 'TAR628G0305' => 'tar', 'TAR636G1176' => 'tar', 'TAR636G2442' => 'tar', 'THA.LOC104800556' => 'tha', 'THA.LOC104809501' => 'tha', 'THA.LOC104815126' => 'tha', 'THA.LOC104815732' => 'tha', 'THA.LOC104823528' => 'tha', 'Thecc.02G365600' => 'tca', 'Thecc.06G222300' => 'tca', 'Thecc.09G261800' => 'tca', 'Thecc.09G291400' => 'tca', 'Thhalv10003028m.g' => 'esa', 'Thhalv10007886m.g' => 'esa', 'Thhalv10016085m.g' => 'esa', 'Thhalv10016681m.g' => 'esa', 'Thhalv10020951m.g' => 'esa', 'TPR.G15598' => 'tpr', 'TPR.G29305' => 'tpr', 'TPR.G32395' => 'tpr', 'TPR.G36998' => 'tpr', 'TPR.G4227' => 'tpr', 'TWI18G1433' => 'twi', 'TWI31G0755' => 'twi', 'TWI38G0912' => 'twi', 'TWI75G1097' => 'twi', 'TWI75G1619' => 'twi', 'TWI79G1336' => 'twi', 'unitig_0.g943' => 'ugi', 'unitig_0.g944' => 'ugi', 'unitig_22.g6646' => 'ugi', 'unitig_37.g12681' => 'ugi', 'unitig_8.g3290' => 'ugi', 'vmacro03278' => 'vma', 'vmacro12197' => 'vma', 'vmacro14478' => 'vma', 'vmacro15787' => 'vma', 'vmacro15789' => 'vma', 'vmacro15790' => 'vma', 'vmacro15806' => 'vma', 'vmacro22907' => 'vma', 'vmacro22908' => 'vma', 'vmacro22909' => 'vma', 'vmacro23108' => 'vma', 'VMungo0540G0540' => 'vmu', 'VMungo0540G2468' => 'vmu', 'VMungo1080G0390' => 'vmu', 'VMungo1080G1165' => 'vmu', 'VMungo1127G0170' => 'vmu', 'VMungo1127G2099' => 'vmu', 'VMungo1215G3013' => 'vmu', 'Zm00001eb013110' => 'zma', 'Zm00001eb084260' => 'zma', 'Zm00001eb096110' => 'zma', 'Zm00001eb217510' => 'zma', 'Zm00001eb322550' => 'zma', 'Zm00001eb390770' => 'zma', 'Zm00001eb397170' => 'zma', 'Zm00001eb404610' => 'zma', 'Zm00001eb421790' => 'zma' ), 'gf_id' => 'HOM05D000911', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000911' ), 'data_identifier' => 'HOM05D000911', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000911', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27780' => 'bna', 'A03p35380' => 'bna', 'A04p21160' => 'bna', 'A05p40570' => 'bna', 'A06p26900' => 'bna', 'A08p33230' => 'bna', 'A09p65960' => 'bna', 'A10p18290' => 'bna', 'Aa31LG1G12990' => 'aar', 'Aa31LG1G2980' => 'aar', 'Aa31LG4G14320' => 'aar', 'Aa31LG7G11800' => 'aar', 'Aa31sc36G50' => 'aar', 'Aa31sc36G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3721' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5459' => 'aag', 'Actinidia03028' => 'ach', 'Actinidia03753' => 'ach', 'Actinidia04187' => 'ach', 'Actinidia05509' => 'ach', 'Actinidia24180' => 'ach', 'Actinidia26906' => 'ach', 'Actinidia37097' => 'ach', 'Actinidia38249' => 'ach', 'Ah.01g003470' => 'amhyb', 'Ah.01g004580' => 'amhyb', 'Ah.01g014850' => 'amhyb', 'Ah.01g016830' => 'amhyb', 'Ah.14g088000' => 'amhyb', 'AL1G22980' => 'aly', 'AL3G18990' => 'aly', 'AL4G22440' => 'aly', 'AL4G33180' => 'aly', 'AL5G22920' => 'aly', 'AL6G33660' => 'aly', 'AL8G20720' => 'aly', 'Aqoxy1G00935' => 'aox', 'Aqoxy1G02094' => 'aox', 'Aqoxy2G01239' => 'aox', 'Aqoxy4G01870' => 'aox', 'Aqoxy7G00450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.36ZVTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71EM27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5D6C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH3WRE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3NCM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RIM768' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YB5YRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z36GDV' => 'arhy', 'AT1G08250' => 'ath', 'AT1G11790' => 'ath', 'AT2G27820' => 'ath', 'AT3G07630' => 'ath', 'AT3G44720' => 'ath', 'AT5G22630' => 'ath', 'ATR0693G304' => 'atr', 'ATR0794G109' => 'atr', 'ATR0820G120' => 'atr', 'ATR1159G064' => 'atr', 'Atru.chr10.2239' => 'acertr', 'Atru.chr3.3371' => 'acertr', 'Atru.chr6.3202' => 'acertr', 'AUR62006499' => 'cqu', 'AUR62012718' => 'cqu', 'AUR62021938' => 'cqu', 'AUR62023932' => 'cqu', 'AUR62025034' => 'cqu', 'AUR62025035' => 'cqu', 'AUR62038307' => 'cqu', 'AUR62043466' => 'cqu', 'BcaB02g10748' => 'bca', 'BcaB03g13231' => 'bca', 'BcaB03g14689' => 'bca', 'BcaB05g22716' => 'bca', 'BcaB06g28172' => 'bca', 'BcaB08g36413' => 'bca', 'BcaC01g02186' => 'bca', 'BcaC01g04272' => 'bca', 'BcaC02g08080' => 'bca', 'BcaC02g08227' => 'bca', 'BcaC03g13901' => 'bca', 'BcaC04g19593' => 'bca', 'BcaC04g20874' => 'bca', 'BcaC05g29557' => 'bca', 'BcaC06g35505' => 'bca', 'BcaC07g41954' => 'bca', 'BcaC07g41955' => 'bca', 'BcaC07g41956' => 'bca', 'BcaC07g42519' => 'bca', 'BcaC07g42520' => 'bca', 'BcaC07g42523' => 'bca', 'BcaC07g42524' => 'bca', 'BcaC07g42525' => 'bca', 'BcaC08g47480' => 'bca', 'BcaC08g47481' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00530' => 'bna', 'BolC2t07178H' => 'bol', 'BolC3t16567H' => 'bol', 'BolC4t27234H' => 'bol', 'BolC5t29728H' => 'bol', 'BolC5t34622H' => 'bol', 'BolC6t40321H' => 'bol', 'BolC7t42028H' => 'bol', 'BolC8t49125H' => 'bol', 'BolC8t52538H' => 'bol', 'BolC8t52539H' => 'bol', 'BolC9t56681H' => 'bol', 'BolC9t58266H' => 'bol', 'BolSC21t60294H' => 'bol', 'BraA02t05670Z' => 'bra', 'BraA03t12716Z' => 'bra', 'BraA04t17685Z' => 'bra', 'BraA05t22788Z' => 'bra', 'BraA06t24032Z' => 'bra', 'BraA06t25625Z' => 'bra', 'BraA07t27930Z' => 'bra', 'BraA08t35242Z' => 'bra', 'BraA09t38609Z' => 'bra', 'BraA10t43905Z' => 'bra', 'C02p11060' => 'bna', 'C03p42990' => 'bna', 'C03p67310' => 'bna', 'C04p56990' => 'bna', 'C04p58660' => 'bna', 'C05p09890' => 'bna', 'C05p59680' => 'bna', 'C06p19830' => 'bna', 'C06p53040' => 'bna', 'C07p15230' => 'bna', 'C08p50070' => 'bna', 'C08p50090' => 'bna', 'C09p38330' => 'bna', 'C09p53940' => 'bna', 'CAN.G1014.1' => 'can', 'CAN.G644.30' => 'can', 'CAN.G84.47' => 'can', 'CAN.G919.8' => 'can', 'CANSAT54G0113' => 'cansat', 'CANSAT54G1286' => 'cansat', 'CANSAT64G1020' => 'cansat', 'CARHR008080' => 'chi', 'CARHR008090' => 'chi', 'CARHR012130' => 'chi', 'CARHR038390' => 'chi', 'CARHR082330' => 'chi', 'CARHR120520' => 'chi', 'CARHR151470' => 'chi', 'CARHR190950' => 'chi', 'Carub.0001s0760' => 'cru', 'Carub.0001s1146' => 'cru', 'Carub.0003s0721' => 'cru', 'Carub.0004s0858' => 'cru', 'Carub.0005s1040' => 'cru', 'Carub.0006s2035' => 'cru', 'Carub.0015s0005' => 'cru', 'Ca_01607_v3' => 'car', 'Ca_01677_v3' => 'car', 'Ca_06087_v3' => 'car', 'Ca_19238_v3' => 'car', 'Ca_19373_v3' => 'car', 'Ca_21079_v3' => 'car', 'CBR_g54016' => 'cbr', 'CBR_g54018' => 'cbr', 'CBR_g54020' => 'cbr', 'Cc01_g09780' => 'ccan', 'Cc01_g11680' => 'ccan', 'Cc02_g15610' => 'ccan', 'Cc05_g04350' => 'ccan', 'Cc09_g01580' => 'ccan', 'CDE01G0795' => 'cde', 'CDE02G2024' => 'cde', 'CDE02G2260' => 'cde', 'CDE02G4561' => 'cde', 'CDE05G2733' => 'cde', 'CDE05G3422' => 'cde', 'CDE06G2003' => 'cde', 'CDE08G0576' => 'cde', 'CDE09G0048' => 'cde', 'CDE11G0805' => 'cde', 'Cfa003644' => 'cfa', 'Cfa006290' => 'cfa', 'Cfa010080' => 'cfa', 'Cfa011376' => 'cfa', 'Cfa011576' => 'cfa', 'Cfa011577' => 'cfa', 'Cfa014389' => 'cfa', 'Ciclev10006044m.g' => 'ccl', 'Ciclev10006954m.g' => 'ccl', 'Ciclev10015131m.g' => 'ccl', 'Ciclev10015580m.g' => 'ccl', 'Ciclev10028359m.g' => 'ccl', 'Ciclev10028573m.g' => 'ccl', 'CiPaw.03G159300' => 'cil', 'CiPaw.04G115100' => 'cil', 'CiPaw.09G092800' => 'cil', 'CiPaw.10G071800' => 'cil', 'CiPaw.13G105800' => 'cil', 'CiPaw.13G141000' => 'cil', 'CiPaw.14G103400' => 'cil', 'ClCG01G012700' => 'cla', 'ClCG01G012720' => 'cla', 'ClCG01G021920' => 'cla', 'ClCG02G008870' => 'cla', 'ClCG02G020840' => 'cla', 'ClCG02G021930' => 'cla', 'COL.COLO4_19302' => 'col', 'COL.COLO4_25262' => 'col', 'COL.COLO4_31788' => 'col', 'Cpa.g.c34684' => 'cpa', 'Cpa.g.c36520.1' => 'cpa', 'Cpa.g.c45626' => 'cpa', 'Cpa.g.sc121.17' => 'cpa', 'Cpa.g.sc13.22' => 'cpa', 'Cpa.g.sc87.88' => 'cpa', 'Cre06.g261800' => 'cre', 'CsaV3_1G014500' => 'csa', 'CsaV3_1G014510' => 'csa', 'CsaV3_2G034880' => 'csa', 'CsaV3_6G014760' => 'csa', 'CsaV3_6G021500' => 'csa', 'CsaV3_6G048980' => 'csa', 'CSS0002511' => 'camsi', 'CSS0007556' => 'camsi', 'CSS0008532' => 'camsi', 'CSS0009709' => 'camsi', 'CSS0010486' => 'camsi', 'CSS0016768' => 'camsi', 'CSS0023512' => 'camsi', 'CSS0025341' => 'camsi', 'CSS0027999' => 'camsi', 'CSS0028944' => 'camsi', 'CSS0032292' => 'camsi', 'CSS0032464' => 'camsi', 'CSS0037153' => 'camsi', 'CSS0039256' => 'camsi', 'CSS0048392' => 'camsi', 'CSS0050458' => 'camsi', 'DCAR_004224' => 'dca', 'DCAR_006147' => 'dca', 'DCAR_006465' => 'dca', 'DCAR_008159' => 'dca', 'DCAR_012164' => 'dca', 'DCAR_019764' => 'dca', 'Dinv05418' => 'din', 'Dinv10839' => 'din', 'Dinv12521' => 'din', 'Dinv13900' => 'din', 'Dinv29426' => 'din', 'Duzib150G0263' => 'dzi', 'Duzib168G1178' => 'dzi', 'Duzib168G1924' => 'dzi', 'Duzib170G0299' => 'dzi', 'Duzib170G0813' => 'dzi', 'Duzib235G1128' => 'dzi', 'Duzib248G1060' => 'dzi', 'ECA232G1910' => 'eca', 'ECA233G4621' => 'eca', 'ECA238G1216' => 'eca', 'ECA238G1784' => 'eca', 'ECA248G1242' => 'eca', 'EL10Ac8g20071' => 'bvu', 'EL10Ac9g21086' => 'bvu', 'EL10Ac9g22407' => 'bvu', 'EL10Ac9g22412' => 'bvu', 'Eucgr.A01119' => 'egr', 'Eucgr.E04043' => 'egr', 'Eucgr.J00428' => 'egr', 'Eucgr.J00958' => 'egr', 'FAN11G3091' => 'fan', 'FAN11G3651' => 'fan', 'FAN16G2566' => 'fan', 'FAN21G3155' => 'fan', 'FAN21G3400' => 'fan', 'FAN21G3543' => 'fan', 'FAN25G0234' => 'fan', 'FAN25G1422' => 'fan', 'FAN25G3392' => 'fan', 'FvH4_3g01940' => 'fve', 'FvH4_3g29870' => 'fve', 'FvH4_3g33680' => 'fve', 'Glyma.09G004200' => 'gma', 'Glyma.11G151288' => 'gma', 'Glyma.11G189100' => 'gma', 'Glyma.12G072500' => 'gma', 'Glyma.12G085500' => 'gma', 'Glyma.12G181800' => 'gma', 'Glyma.12G193000' => 'gma', 'Glyma.13G309300' => 'gma', 'Glyma.13G319000' => 'gma', 'Glyma.17G012600' => 'gma', 'Gohir.A06G148600' => 'ghi', 'Gohir.A07G115800' => 'ghi', 'Gohir.A08G003600' => 'ghi', 'Gohir.A09G093300' => 'ghi', 'Gohir.A09G105400' => 'ghi', 'Gohir.A09G105500' => 'ghi', 'Gohir.D06G154600' => 'ghi', 'Gohir.D07G120200' => 'ghi', 'Gohir.D08G013900' => 'ghi', 'Gohir.D09G093100' => 'ghi', 'Gohir.D09G102200' => 'ghi', 'Gohir.D09G102300' => 'ghi', 'Gorai.001G129400' => 'gra', 'Gorai.004G008200' => 'gra', 'Gorai.006G109800' => 'gra', 'Gorai.006G119500' => 'gra', 'Gorai.006G121300' => 'gra', 'Gorai.010G180700' => 'gra', 'GSVIVG01012716001' => 'vvi', 'GSVIVG01025118001' => 'vvi', 'GSVIVG01030439001' => 'vvi', 'GSVIVG01031397001' => 'vvi', 'HanXRQChr01g0004201' => 'han', 'HanXRQChr02g0054941' => 'han', 'HanXRQChr05g0141811' => 'han', 'HanXRQChr07g0197751' => 'han', 'HanXRQChr11g0346691' => 'han', 'HanXRQChr13g0396971' => 'han', 'HanXRQChr14g0432951' => 'han', 'HanXRQChr14g0452001' => 'han', 'HanXRQChr15g0496681' => 'han', 'HanXRQChr17g0557491' => 'han', 'HanXRQChr17g0557501' => 'han', 'Haze_06809' => 'cav', 'Haze_12852' => 'cav', 'Haze_15850' => 'cav', 'Haze_23446' => 'cav', 'Haze_23942' => 'cav', 'Haze_23943' => 'cav', 'Hma1.2p1_0091F.1_g046450' => 'hma', 'Hma1.2p1_0128F.1_g059910' => 'hma', 'Hma1.2p1_0249F.1_g102260' => 'hma', 'Hma1.2p1_0453F.1_g156190' => 'hma', 'Hma1.2p1_0695F.1_g204380' => 'hma', 'Hma1.2p1_0749F.1_g212650' => 'hma', 'Hma1.2p1_2156F.1_g315420' => 'hma', 'Hma1.2p1_2686F.1_g326940' => 'hma', 'HPP92_006428' => 'vpl', 'HPP92_012069' => 'vpl', 'HPP92_014129' => 'vpl', 'HPP92_014133' => 'vpl', 'HPP92_017315' => 'vpl', 'HPP92_026445' => 'vpl', 'HPP92_026446' => 'vpl', 'Hund00774' => 'sun', 'Hund07682' => 'sun', 'Hund21413' => 'sun', 'Hund23462' => 'sun', 'Hund23463' => 'sun', 'Lalb_Chr03g0027911' => 'lal', 'Lalb_Chr13g0304271' => 'lal', 'Lalb_Chr19g0137471' => 'lal', 'Lalb_Chr22g0350651' => 'lal', 'Lalb_Chr24g0395151' => 'lal', 'Lj1A1231T40' => 'lonja', 'Lj1A221T48' => 'lonja', 'Lj1C924T12' => 'lonja', 'Lj2C993G6' => 'lonja', 'Lj3g0005790' => 'lja', 'Lj3g0015432' => 'lja', 'Lj3g0017722' => 'lja', 'Lj3g0018497' => 'lja', 'Lj4g0025071' => 'lja', 'Lsat_1_v5_gn_1_129680' => 'lsa', 'Lsat_1_v5_gn_2_25321' => 'lsa', 'Lsat_1_v5_gn_2_95461' => 'lsa', 'Lsat_1_v5_gn_4_159620' => 'lsa', 'Lsat_1_v5_gn_6_41301' => 'lsa', 'Lsat_1_v5_gn_6_74660' => 'lsa', 'Lsat_1_v5_gn_7_11520' => 'lsa', 'Lsat_1_v5_gn_9_67680' => 'lsa', 'Manes.04G008300' => 'mes', 'Manes.04G008400' => 'mes', 'Manes.04G026500' => 'mes', 'Manes.10G135300' => 'mes', 'Manes.11G157300' => 'mes', 'Manes.12G074000' => 'mes', 'Manes.16G006200' => 'mes', 'Manes.17G026400' => 'mes', 'Mapoly0024s0086' => 'mpo', 'Mapoly0024s0087' => 'mpo', 'Mapoly0071s0057' => 'mpo', 'Mapoly0204s0012' => 'mpo', 'MBI04_g37681_MAGBIO' => 'mbi', 'MBI05_g17779_MAGBIO' => 'mbi', 'MBI12_g31184_MAGBIO' => 'mbi', 'MBI17_g11083_MAGBIO' => 'mbi', 'MBI18_g03883_MAGBIO' => 'mbi', 'MBI18_g28940_MAGBIO' => 'mbi', 'MCO01G690' => 'mco', 'MD03G1109900' => 'mdo', 'MD03G1134800' => 'mdo', 'MD05G1348000' => 'mdo', 'MD10G1322400' => 'mdo', 'MD11G1123300' => 'mdo', 'MD11G1157600' => 'mdo', 'Medtr2g084875' => 'mtr', 'Medtr2g088130' => 'mtr', 'Medtr4g055310' => 'mtr', 'Medtr4g061070' => 'mtr', 'Medtr4g132250' => 'mtr', 'MELO3C004795.2' => 'cme', 'MELO3C004797.2' => 'cme', 'MELO3C007396.2' => 'cme', 'MELO3C019277.2' => 'cme', 'MELO3C021449.2' => 'cme', 'MELO3C025736.2' => 'cme', 'Migut.D02175' => 'egut', 'Migut.H01573' => 'egut', 'Migut.M01327' => 'egut', 'Migut.N02513' => 'egut', 'MSTRG.14638' => 'ama', 'MSTRG.18632' => 'ama', 'MSTRG.7203' => 'ama', 'Nitab4.5_0000533g0140' => 'nta', 'Nitab4.5_0000888g0150' => 'nta', 'Nitab4.5_0001453g0040' => 'nta', 'Nitab4.5_0002827g0090' => 'nta', 'Nitab4.5_0003082g0040' => 'nta', 'Nitab4.5_0007799g0040' => 'nta', 'Nitab4.5_0008983g0010' => 'nta', 'Nitab4.5_0009017g0020' => 'nta', 'Nn1g02132' => 'nnu', 'Nn1g03492' => 'nnu', 'Nn1g03493' => 'nnu', 'Nn1g03494' => 'nnu', 'Nn1g07164' => 'nnu', 'Nn1g07291' => 'nnu', 'Nn2g10655' => 'nnu', 'Nn2g11652' => 'nnu', 'Nn2g14008' => 'nnu', 'Nn3g17476' => 'nnu', 'Nn3g17477' => 'nnu', 'Nn4g22370' => 'nnu', 'Nn4g25255' => 'nnu', 'Nn5g27755' => 'nnu', 'Nn6g34260' => 'nnu', 'Nn6g35041' => 'nnu', 'Oeu005924.1' => 'oeu', 'Oeu008383.1' => 'oeu', 'Oeu014928.1' => 'oeu', 'Oeu019889.1' => 'oeu', 'Oeu022271.1' => 'oeu', 'Oeu025271.1' => 'oeu', 'Oeu036302.1' => 'oeu', 'Oeu044100.1' => 'oeu', 'Os01g0528300' => 'osa', 'Os03g0286200' => 'osa', 'Os04g0406600' => 'osa', 'Os07g0512000' => 'osa', 'Os07g0694600' => 'osa', 'Os08g0411000' => 'osa', 'Os09g0565700' => 'osa', 'Os09g0566050' => 'osa', 'Os10g0523700' => 'osa', 'Peaxi162Scf00002g00514' => 'pax', 'Peaxi162Scf00047g01817' => 'pax', 'Peaxi162Scf00114g00001' => 'pax', 'Peaxi162Scf00147g00613' => 'pax', 'Peaxi162Scf00389g00425' => 'pax', 'PGR042G1139' => 'pgr', 'PGR042G3273' => 'pgr', 'PGR102G2180' => 'pgr', 'PGR119G0234' => 'pgr', 'PGR119G0668' => 'pgr', 'PGSC0003DMG400007122' => 'stu', 'PGSC0003DMG400016478' => 'stu', 'PGSC0003DMG400025374' => 'stu', 'PGSC0003DMG400026536' => 'stu', 'Phvul.003G079600' => 'pvu', 'Phvul.005G115600' => 'pvu', 'Phvul.005G127100' => 'pvu', 'Phvul.006G149500' => 'pvu', 'Phvul.006G149600' => 'pvu', 'Phvul.011G071800' => 'pvu', 'Phvul.011G090400' => 'pvu', 'Potri.004G013400' => 'ptr', 'Potri.004G188100' => 'ptr', 'Potri.008G195500' => 'ptr', 'Potri.009G148800' => 'ptr', 'Potri.011G004700' => 'ptr', 'Pp3c17_22810' => 'ppa', 'Pp3c18_4480' => 'ppa', 'Pp3c19_13030' => 'ppa', 'Pp3c1_33620' => 'ppa', 'Pp3c2_9380' => 'ppa', 'PRCOL_00001023' => 'pco', 'Prupe.3G216300' => 'ppe', 'Prupe.4G019500' => 'ppe', 'Prupe.6G092500' => 'ppe', 'Prupe.6G119200' => 'ppe', 'Psat0s1945g0080' => 'psa', 'Psat0s4167g0040' => 'psa', 'Psat1g185800' => 'psa', 'Psat4g006440' => 'psa', 'Psat4g006480' => 'psa', 'Psat4g168120' => 'psa', 'Psat5g255680' => 'psa', 'Psat5g261760' => 'psa', 'Psat7g222120' => 'psa', 'PSO063G7252' => 'pso', 'PSO170G4778' => 'pso', 'PSO210G2249' => 'pso', 'PSO339G2411' => 'pso', 'PSO339G2457' => 'pso', 'PSO339G2854' => 'pso', 'PSO339G4288' => 'pso', 'PSO339G4615' => 'pso', 'PSO384G2796' => 'pso', 'PSO384G2940' => 'pso', 'PSO384G4227' => 'pso', 'PSO478G1425' => 'pso', 'PSO541G3863' => 'pso', 'PSO675G0507' => 'pso', 'PSO782G0338' => 'pso', 'PSO832G0644' => 'pso', 'QL01p013664' => 'qlo', 'QL01p036598' => 'qlo', 'QL05p072984' => 'qlo', 'QL08p005768' => 'qlo', 'QL08p032743' => 'qlo', 'QL93p0073_0439' => 'qlo', 'QL93p0073_0444' => 'qlo', 'RcHm_v2.0_Chr5g0002851' => 'rch', 'RcHm_v2.0_Chr5g0055201' => 'rch', 'RcHm_v2.0_Chr5g0061191' => 'rch', 'RcHm_v2.0_Chr7g0203231' => 'rch', 'Rhsim01G0208100' => 'rsi', 'Rhsim01G0208200' => 'rsi', 'Rhsim02G0106500' => 'rsi', 'Rhsim03G0107900' => 'rsi', 'Rhsim06G0163400' => 'rsi', 'Rhsim13G0105200' => 'rsi', 'Sabra04G0006300' => 'sbr', 'Sabra04G0127000' => 'sbr', 'Sabra08G0148700' => 'sbr', 'Sabra09G0117400' => 'sbr', 'SalBow1G3326' => 'sbo', 'SalBow3G3228' => 'sbo', 'SalBow6G1634' => 'sbo', 'SalBow6G3603' => 'sbo', 'SalBow6G5266' => 'sbo', 'SalBow7G2265' => 'sbo', 'SalBow8G0850' => 'sbo', 'SalBow8G2592' => 'sbo', 'Sc05g0009240' => 'sci', 'Sc12g0002300' => 'sci', 'Sc21g0000100' => 'sci', 'Sc21g0004720' => 'sci', 'Sed0002949' => 'sed', 'Sed0004114' => 'sed', 'Sed0004306' => 'sed', 'Sed0006172' => 'sed', 'Sed0008413' => 'sed', 'Sed0013809' => 'sed', 'Sed0019556' => 'sed', 'SEGI_03570' => 'sgi', 'SEGI_07859' => 'sgi', 'SEGI_15042' => 'sgi', 'SEGI_16263' => 'sgi', 'SEGI_16552' => 'sgi', 'SEGI_24331' => 'sgi', 'SEGI_27316' => 'sgi', 'SEGI_29521' => 'sgi', 'SEGI_41342' => 'sgi', 'SGA_v2.0_scaffold27G11617' => 'sas', 'SGA_v2.0_scaffold316G48428' => 'sas', 'SGA_v2.0_scaffold49G18261' => 'sas', 'SGA_v2.0_scaffold7G03831' => 'sas', 'SGA_v2.0_scaffold93G28359' => 'sas', 'SHI02210' => 'shi', 'SHI06028' => 'shi', 'SHI06321' => 'shi', 'SMO111G0012' => 'smo', 'SMO228G0080' => 'smo', 'SMO356G0756' => 'smo', 'Solyc02g080620.3' => 'sly', 'Solyc06g074530.1' => 'sly', 'Solyc11g066890.1' => 'sly', 'Solyc11g072520.3' => 'sly', 'Sopen02g025330' => 'spe', 'Sopen06g031000' => 'spe', 'Sopen09g008240' => 'spe', 'Sopen09g025210' => 'spe', 'Sopen11g026600' => 'spe', 'Sopen11g030170' => 'spe', 'Sp1g10420' => 'spa', 'Sp3g06570' => 'spa', 'Sp4g10660' => 'spa', 'Sp5g16460' => 'spa', 'Sp6g22710' => 'spa', 'TAR365G0112' => 'tar', 'TAR369G0717' => 'tar', 'TAR374G0976' => 'tar', 'TAR623G1128' => 'tar', 'TAR626G1937' => 'tar', 'TAR627G0123' => 'tar', 'TAR628G0305' => 'tar', 'TAR636G1176' => 'tar', 'TAR636G2442' => 'tar', 'THA.LOC104800556' => 'tha', 'THA.LOC104809501' => 'tha', 'THA.LOC104815126' => 'tha', 'THA.LOC104815732' => 'tha', 'THA.LOC104823528' => 'tha', 'Thecc.02G365600' => 'tca', 'Thecc.06G222300' => 'tca', 'Thecc.09G261800' => 'tca', 'Thecc.09G291400' => 'tca', 'Thhalv10003028m.g' => 'esa', 'Thhalv10007886m.g' => 'esa', 'Thhalv10016085m.g' => 'esa', 'Thhalv10016681m.g' => 'esa', 'Thhalv10020951m.g' => 'esa', 'TPR.G15598' => 'tpr', 'TPR.G29305' => 'tpr', 'TPR.G32395' => 'tpr', 'TPR.G36998' => 'tpr', 'TPR.G4227' => 'tpr', 'TWI18G1433' => 'twi', 'TWI31G0755' => 'twi', 'TWI38G0912' => 'twi', 'TWI75G1097' => 'twi', 'TWI75G1619' => 'twi', 'TWI79G1336' => 'twi', 'unitig_0.g943' => 'ugi', 'unitig_0.g944' => 'ugi', 'unitig_22.g6646' => 'ugi', 'unitig_37.g12681' => 'ugi', 'unitig_8.g3290' => 'ugi', 'vmacro03278' => 'vma', 'vmacro12197' => 'vma', 'vmacro14478' => 'vma', 'vmacro15787' => 'vma', 'vmacro15789' => 'vma', 'vmacro15790' => 'vma', 'vmacro15806' => 'vma', 'vmacro22907' => 'vma', 'vmacro22908' => 'vma', 'vmacro22909' => 'vma', 'vmacro23108' => 'vma', 'VMungo0540G0540' => 'vmu', 'VMungo0540G2468' => 'vmu', 'VMungo1080G0390' => 'vmu', 'VMungo1080G1165' => 'vmu', 'VMungo1127G0170' => 'vmu', 'VMungo1127G2099' => 'vmu', 'VMungo1215G3013' => 'vmu', 'Zm00001eb013110' => 'zma', 'Zm00001eb084260' => 'zma', 'Zm00001eb096110' => 'zma', 'Zm00001eb217510' => 'zma', 'Zm00001eb322550' => 'zma', 'Zm00001eb390770' => 'zma', 'Zm00001eb397170' => 'zma', 'Zm00001eb404610' => 'zma', 'Zm00001eb421790' => 'zma' ) $gf_id = 'HOM05D000911' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000911' ) $data_identifier = 'HOM05D000911' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 16, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 5, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 6, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 8, 'nnu' => (int) 16, 'oeu' => (int) 8, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 5, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 16, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421790' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000911', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27780' => 'bna', 'A03p35380' => 'bna', 'A04p21160' => 'bna', 'A05p40570' => 'bna', 'A06p26900' => 'bna', 'A08p33230' => 'bna', 'A09p65960' => 'bna', 'A10p18290' => 'bna', 'Aa31LG1G12990' => 'aar', 'Aa31LG1G2980' => 'aar', 'Aa31LG4G14320' => 'aar', 'Aa31LG7G11800' => 'aar', 'Aa31sc36G50' => 'aar', 'Aa31sc36G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3721' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5459' => 'aag', 'Actinidia03028' => 'ach', 'Actinidia03753' => 'ach', 'Actinidia04187' => 'ach', 'Actinidia05509' => 'ach', 'Actinidia24180' => 'ach', 'Actinidia26906' => 'ach', 'Actinidia37097' => 'ach', 'Actinidia38249' => 'ach', 'Ah.01g003470' => 'amhyb', 'Ah.01g004580' => 'amhyb', 'Ah.01g014850' => 'amhyb', 'Ah.01g016830' => 'amhyb', 'Ah.14g088000' => 'amhyb', 'AL1G22980' => 'aly', 'AL3G18990' => 'aly', 'AL4G22440' => 'aly', 'AL4G33180' => 'aly', 'AL5G22920' => 'aly', 'AL6G33660' => 'aly', 'AL8G20720' => 'aly', 'Aqoxy1G00935' => 'aox', 'Aqoxy1G02094' => 'aox', 'Aqoxy2G01239' => 'aox', 'Aqoxy4G01870' => 'aox', 'Aqoxy7G00450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.36ZVTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71EM27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5D6C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH3WRE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3NCM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RIM768' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YB5YRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z36GDV' => 'arhy', 'AT1G08250' => 'ath', 'AT1G11790' => 'ath', 'AT2G27820' => 'ath', 'AT3G07630' => 'ath', 'AT3G44720' => 'ath', 'AT5G22630' => 'ath', 'ATR0693G304' => 'atr', 'ATR0794G109' => 'atr', 'ATR0820G120' => 'atr', 'ATR1159G064' => 'atr', 'Atru.chr10.2239' => 'acertr', 'Atru.chr3.3371' => 'acertr', 'Atru.chr6.3202' => 'acertr', 'AUR62006499' => 'cqu', 'AUR62012718' => 'cqu', 'AUR62021938' => 'cqu', 'AUR62023932' => 'cqu', 'AUR62025034' => 'cqu', 'AUR62025035' => 'cqu', 'AUR62038307' => 'cqu', 'AUR62043466' => 'cqu', 'BcaB02g10748' => 'bca', 'BcaB03g13231' => 'bca', 'BcaB03g14689' => 'bca', 'BcaB05g22716' => 'bca', 'BcaB06g28172' => 'bca', 'BcaB08g36413' => 'bca', 'BcaC01g02186' => 'bca', 'BcaC01g04272' => 'bca', 'BcaC02g08080' => 'bca', 'BcaC02g08227' => 'bca', 'BcaC03g13901' => 'bca', 'BcaC04g19593' => 'bca', 'BcaC04g20874' => 'bca', 'BcaC05g29557' => 'bca', 'BcaC06g35505' => 'bca', 'BcaC07g41954' => 'bca', 'BcaC07g41955' => 'bca', 'BcaC07g41956' => 'bca', 'BcaC07g42519' => 'bca', 'BcaC07g42520' => 'bca', 'BcaC07g42523' => 'bca', 'BcaC07g42524' => 'bca', 'BcaC07g42525' => 'bca', 'BcaC08g47480' => 'bca', 'BcaC08g47481' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00530' => 'bna', 'BolC2t07178H' => 'bol', 'BolC3t16567H' => 'bol', 'BolC4t27234H' => 'bol', 'BolC5t29728H' => 'bol', 'BolC5t34622H' => 'bol', 'BolC6t40321H' => 'bol', 'BolC7t42028H' => 'bol', 'BolC8t49125H' => 'bol', 'BolC8t52538H' => 'bol', 'BolC8t52539H' => 'bol', 'BolC9t56681H' => 'bol', 'BolC9t58266H' => 'bol', 'BolSC21t60294H' => 'bol', 'BraA02t05670Z' => 'bra', 'BraA03t12716Z' => 'bra', 'BraA04t17685Z' => 'bra', 'BraA05t22788Z' => 'bra', 'BraA06t24032Z' => 'bra', 'BraA06t25625Z' => 'bra', 'BraA07t27930Z' => 'bra', 'BraA08t35242Z' => 'bra', 'BraA09t38609Z' => 'bra', 'BraA10t43905Z' => 'bra', 'C02p11060' => 'bna', 'C03p42990' => 'bna', 'C03p67310' => 'bna', 'C04p56990' => 'bna', 'C04p58660' => 'bna', 'C05p09890' => 'bna', 'C05p59680' => 'bna', 'C06p19830' => 'bna', 'C06p53040' => 'bna', 'C07p15230' => 'bna', 'C08p50070' => 'bna', 'C08p50090' => 'bna', 'C09p38330' => 'bna', 'C09p53940' => 'bna', 'CAN.G1014.1' => 'can', 'CAN.G644.30' => 'can', 'CAN.G84.47' => 'can', 'CAN.G919.8' => 'can', 'CANSAT54G0113' => 'cansat', 'CANSAT54G1286' => 'cansat', 'CANSAT64G1020' => 'cansat', 'CARHR008080' => 'chi', 'CARHR008090' => 'chi', 'CARHR012130' => 'chi', 'CARHR038390' => 'chi', 'CARHR082330' => 'chi', 'CARHR120520' => 'chi', 'CARHR151470' => 'chi', 'CARHR190950' => 'chi', 'Carub.0001s0760' => 'cru', 'Carub.0001s1146' => 'cru', 'Carub.0003s0721' => 'cru', 'Carub.0004s0858' => 'cru', 'Carub.0005s1040' => 'cru', 'Carub.0006s2035' => 'cru', 'Carub.0015s0005' => 'cru', 'Ca_01607_v3' => 'car', 'Ca_01677_v3' => 'car', 'Ca_06087_v3' => 'car', 'Ca_19238_v3' => 'car', 'Ca_19373_v3' => 'car', 'Ca_21079_v3' => 'car', 'CBR_g54016' => 'cbr', 'CBR_g54018' => 'cbr', 'CBR_g54020' => 'cbr', 'Cc01_g09780' => 'ccan', 'Cc01_g11680' => 'ccan', 'Cc02_g15610' => 'ccan', 'Cc05_g04350' => 'ccan', 'Cc09_g01580' => 'ccan', 'CDE01G0795' => 'cde', 'CDE02G2024' => 'cde', 'CDE02G2260' => 'cde', 'CDE02G4561' => 'cde', 'CDE05G2733' => 'cde', 'CDE05G3422' => 'cde', 'CDE06G2003' => 'cde', 'CDE08G0576' => 'cde', 'CDE09G0048' => 'cde', 'CDE11G0805' => 'cde', 'Cfa003644' => 'cfa', 'Cfa006290' => 'cfa', 'Cfa010080' => 'cfa', 'Cfa011376' => 'cfa', 'Cfa011576' => 'cfa', 'Cfa011577' => 'cfa', 'Cfa014389' => 'cfa', 'Ciclev10006044m.g' => 'ccl', 'Ciclev10006954m.g' => 'ccl', 'Ciclev10015131m.g' => 'ccl', 'Ciclev10015580m.g' => 'ccl', 'Ciclev10028359m.g' => 'ccl', 'Ciclev10028573m.g' => 'ccl', 'CiPaw.03G159300' => 'cil', 'CiPaw.04G115100' => 'cil', 'CiPaw.09G092800' => 'cil', 'CiPaw.10G071800' => 'cil', 'CiPaw.13G105800' => 'cil', 'CiPaw.13G141000' => 'cil', 'CiPaw.14G103400' => 'cil', 'ClCG01G012700' => 'cla', 'ClCG01G012720' => 'cla', 'ClCG01G021920' => 'cla', 'ClCG02G008870' => 'cla', 'ClCG02G020840' => 'cla', 'ClCG02G021930' => 'cla', 'COL.COLO4_19302' => 'col', 'COL.COLO4_25262' => 'col', 'COL.COLO4_31788' => 'col', 'Cpa.g.c34684' => 'cpa', 'Cpa.g.c36520.1' => 'cpa', 'Cpa.g.c45626' => 'cpa', 'Cpa.g.sc121.17' => 'cpa', 'Cpa.g.sc13.22' => 'cpa', 'Cpa.g.sc87.88' => 'cpa', 'Cre06.g261800' => 'cre', 'CsaV3_1G014500' => 'csa', 'CsaV3_1G014510' => 'csa', 'CsaV3_2G034880' => 'csa', 'CsaV3_6G014760' => 'csa', 'CsaV3_6G021500' => 'csa', 'CsaV3_6G048980' => 'csa', 'CSS0002511' => 'camsi', 'CSS0007556' => 'camsi', 'CSS0008532' => 'camsi', 'CSS0009709' => 'camsi', 'CSS0010486' => 'camsi', 'CSS0016768' => 'camsi', 'CSS0023512' => 'camsi', 'CSS0025341' => 'camsi', 'CSS0027999' => 'camsi', 'CSS0028944' => 'camsi', 'CSS0032292' => 'camsi', 'CSS0032464' => 'camsi', 'CSS0037153' => 'camsi', 'CSS0039256' => 'camsi', 'CSS0048392' => 'camsi', 'CSS0050458' => 'camsi', 'DCAR_004224' => 'dca', 'DCAR_006147' => 'dca', 'DCAR_006465' => 'dca', 'DCAR_008159' => 'dca', 'DCAR_012164' => 'dca', 'DCAR_019764' => 'dca', 'Dinv05418' => 'din', 'Dinv10839' => 'din', 'Dinv12521' => 'din', 'Dinv13900' => 'din', 'Dinv29426' => 'din', 'Duzib150G0263' => 'dzi', 'Duzib168G1178' => 'dzi', 'Duzib168G1924' => 'dzi', 'Duzib170G0299' => 'dzi', 'Duzib170G0813' => 'dzi', 'Duzib235G1128' => 'dzi', 'Duzib248G1060' => 'dzi', 'ECA232G1910' => 'eca', 'ECA233G4621' => 'eca', 'ECA238G1216' => 'eca', 'ECA238G1784' => 'eca', 'ECA248G1242' => 'eca', 'EL10Ac8g20071' => 'bvu', 'EL10Ac9g21086' => 'bvu', 'EL10Ac9g22407' => 'bvu', 'EL10Ac9g22412' => 'bvu', 'Eucgr.A01119' => 'egr', 'Eucgr.E04043' => 'egr', 'Eucgr.J00428' => 'egr', 'Eucgr.J00958' => 'egr', 'FAN11G3091' => 'fan', 'FAN11G3651' => 'fan', 'FAN16G2566' => 'fan', 'FAN21G3155' => 'fan', 'FAN21G3400' => 'fan', 'FAN21G3543' => 'fan', 'FAN25G0234' => 'fan', 'FAN25G1422' => 'fan', 'FAN25G3392' => 'fan', 'FvH4_3g01940' => 'fve', 'FvH4_3g29870' => 'fve', 'FvH4_3g33680' => 'fve', 'Glyma.09G004200' => 'gma', 'Glyma.11G151288' => 'gma', 'Glyma.11G189100' => 'gma', 'Glyma.12G072500' => 'gma', 'Glyma.12G085500' => 'gma', 'Glyma.12G181800' => 'gma', 'Glyma.12G193000' => 'gma', 'Glyma.13G309300' => 'gma', 'Glyma.13G319000' => 'gma', 'Glyma.17G012600' => 'gma', 'Gohir.A06G148600' => 'ghi', 'Gohir.A07G115800' => 'ghi', 'Gohir.A08G003600' => 'ghi', 'Gohir.A09G093300' => 'ghi', 'Gohir.A09G105400' => 'ghi', 'Gohir.A09G105500' => 'ghi', 'Gohir.D06G154600' => 'ghi', 'Gohir.D07G120200' => 'ghi', 'Gohir.D08G013900' => 'ghi', 'Gohir.D09G093100' => 'ghi', 'Gohir.D09G102200' => 'ghi', 'Gohir.D09G102300' => 'ghi', 'Gorai.001G129400' => 'gra', 'Gorai.004G008200' => 'gra', 'Gorai.006G109800' => 'gra', 'Gorai.006G119500' => 'gra', 'Gorai.006G121300' => 'gra', 'Gorai.010G180700' => 'gra', 'GSVIVG01012716001' => 'vvi', 'GSVIVG01025118001' => 'vvi', 'GSVIVG01030439001' => 'vvi', 'GSVIVG01031397001' => 'vvi', 'HanXRQChr01g0004201' => 'han', 'HanXRQChr02g0054941' => 'han', 'HanXRQChr05g0141811' => 'han', 'HanXRQChr07g0197751' => 'han', 'HanXRQChr11g0346691' => 'han', 'HanXRQChr13g0396971' => 'han', 'HanXRQChr14g0432951' => 'han', 'HanXRQChr14g0452001' => 'han', 'HanXRQChr15g0496681' => 'han', 'HanXRQChr17g0557491' => 'han', 'HanXRQChr17g0557501' => 'han', 'Haze_06809' => 'cav', 'Haze_12852' => 'cav', 'Haze_15850' => 'cav', 'Haze_23446' => 'cav', 'Haze_23942' => 'cav', 'Haze_23943' => 'cav', 'Hma1.2p1_0091F.1_g046450' => 'hma', 'Hma1.2p1_0128F.1_g059910' => 'hma', 'Hma1.2p1_0249F.1_g102260' => 'hma', 'Hma1.2p1_0453F.1_g156190' => 'hma', 'Hma1.2p1_0695F.1_g204380' => 'hma', 'Hma1.2p1_0749F.1_g212650' => 'hma', 'Hma1.2p1_2156F.1_g315420' => 'hma', 'Hma1.2p1_2686F.1_g326940' => 'hma', 'HPP92_006428' => 'vpl', 'HPP92_012069' => 'vpl', 'HPP92_014129' => 'vpl', 'HPP92_014133' => 'vpl', 'HPP92_017315' => 'vpl', 'HPP92_026445' => 'vpl', 'HPP92_026446' => 'vpl', 'Hund00774' => 'sun', 'Hund07682' => 'sun', 'Hund21413' => 'sun', 'Hund23462' => 'sun', 'Hund23463' => 'sun', 'Lalb_Chr03g0027911' => 'lal', 'Lalb_Chr13g0304271' => 'lal', 'Lalb_Chr19g0137471' => 'lal', 'Lalb_Chr22g0350651' => 'lal', 'Lalb_Chr24g0395151' => 'lal', 'Lj1A1231T40' => 'lonja', 'Lj1A221T48' => 'lonja', 'Lj1C924T12' => 'lonja', 'Lj2C993G6' => 'lonja', 'Lj3g0005790' => 'lja', 'Lj3g0015432' => 'lja', 'Lj3g0017722' => 'lja', 'Lj3g0018497' => 'lja', 'Lj4g0025071' => 'lja', 'Lsat_1_v5_gn_1_129680' => 'lsa', 'Lsat_1_v5_gn_2_25321' => 'lsa', 'Lsat_1_v5_gn_2_95461' => 'lsa', 'Lsat_1_v5_gn_4_159620' => 'lsa', 'Lsat_1_v5_gn_6_41301' => 'lsa', 'Lsat_1_v5_gn_6_74660' => 'lsa', 'Lsat_1_v5_gn_7_11520' => 'lsa', 'Lsat_1_v5_gn_9_67680' => 'lsa', 'Manes.04G008300' => 'mes', 'Manes.04G008400' => 'mes', 'Manes.04G026500' => 'mes', 'Manes.10G135300' => 'mes', 'Manes.11G157300' => 'mes', 'Manes.12G074000' => 'mes', 'Manes.16G006200' => 'mes', 'Manes.17G026400' => 'mes', 'Mapoly0024s0086' => 'mpo', 'Mapoly0024s0087' => 'mpo', 'Mapoly0071s0057' => 'mpo', 'Mapoly0204s0012' => 'mpo', 'MBI04_g37681_MAGBIO' => 'mbi', 'MBI05_g17779_MAGBIO' => 'mbi', 'MBI12_g31184_MAGBIO' => 'mbi', 'MBI17_g11083_MAGBIO' => 'mbi', 'MBI18_g03883_MAGBIO' => 'mbi', 'MBI18_g28940_MAGBIO' => 'mbi', 'MCO01G690' => 'mco', 'MD03G1109900' => 'mdo', 'MD03G1134800' => 'mdo', 'MD05G1348000' => 'mdo', 'MD10G1322400' => 'mdo', 'MD11G1123300' => 'mdo', 'MD11G1157600' => 'mdo', 'Medtr2g084875' => 'mtr', 'Medtr2g088130' => 'mtr', 'Medtr4g055310' => 'mtr', 'Medtr4g061070' => 'mtr', 'Medtr4g132250' => 'mtr', 'MELO3C004795.2' => 'cme', 'MELO3C004797.2' => 'cme', 'MELO3C007396.2' => 'cme', 'MELO3C019277.2' => 'cme', 'MELO3C021449.2' => 'cme', 'MELO3C025736.2' => 'cme', 'Migut.D02175' => 'egut', 'Migut.H01573' => 'egut', 'Migut.M01327' => 'egut', 'Migut.N02513' => 'egut', 'MSTRG.14638' => 'ama', 'MSTRG.18632' => 'ama', 'MSTRG.7203' => 'ama', 'Nitab4.5_0000533g0140' => 'nta', 'Nitab4.5_0000888g0150' => 'nta', 'Nitab4.5_0001453g0040' => 'nta', 'Nitab4.5_0002827g0090' => 'nta', 'Nitab4.5_0003082g0040' => 'nta', 'Nitab4.5_0007799g0040' => 'nta', 'Nitab4.5_0008983g0010' => 'nta', 'Nitab4.5_0009017g0020' => 'nta', 'Nn1g02132' => 'nnu', 'Nn1g03492' => 'nnu', 'Nn1g03493' => 'nnu', 'Nn1g03494' => 'nnu', 'Nn1g07164' => 'nnu', 'Nn1g07291' => 'nnu', 'Nn2g10655' => 'nnu', 'Nn2g11652' => 'nnu', 'Nn2g14008' => 'nnu', 'Nn3g17476' => 'nnu', 'Nn3g17477' => 'nnu', 'Nn4g22370' => 'nnu', 'Nn4g25255' => 'nnu', 'Nn5g27755' => 'nnu', 'Nn6g34260' => 'nnu', 'Nn6g35041' => 'nnu', 'Oeu005924.1' => 'oeu', 'Oeu008383.1' => 'oeu', 'Oeu014928.1' => 'oeu', 'Oeu019889.1' => 'oeu', 'Oeu022271.1' => 'oeu', 'Oeu025271.1' => 'oeu', 'Oeu036302.1' => 'oeu', 'Oeu044100.1' => 'oeu', 'Os01g0528300' => 'osa', 'Os03g0286200' => 'osa', 'Os04g0406600' => 'osa', 'Os07g0512000' => 'osa', 'Os07g0694600' => 'osa', 'Os08g0411000' => 'osa', 'Os09g0565700' => 'osa', 'Os09g0566050' => 'osa', 'Os10g0523700' => 'osa', 'Peaxi162Scf00002g00514' => 'pax', 'Peaxi162Scf00047g01817' => 'pax', 'Peaxi162Scf00114g00001' => 'pax', 'Peaxi162Scf00147g00613' => 'pax', 'Peaxi162Scf00389g00425' => 'pax', 'PGR042G1139' => 'pgr', 'PGR042G3273' => 'pgr', 'PGR102G2180' => 'pgr', 'PGR119G0234' => 'pgr', 'PGR119G0668' => 'pgr', 'PGSC0003DMG400007122' => 'stu', 'PGSC0003DMG400016478' => 'stu', 'PGSC0003DMG400025374' => 'stu', 'PGSC0003DMG400026536' => 'stu', 'Phvul.003G079600' => 'pvu', 'Phvul.005G115600' => 'pvu', 'Phvul.005G127100' => 'pvu', 'Phvul.006G149500' => 'pvu', 'Phvul.006G149600' => 'pvu', 'Phvul.011G071800' => 'pvu', 'Phvul.011G090400' => 'pvu', 'Potri.004G013400' => 'ptr', 'Potri.004G188100' => 'ptr', 'Potri.008G195500' => 'ptr', 'Potri.009G148800' => 'ptr', 'Potri.011G004700' => 'ptr', 'Pp3c17_22810' => 'ppa', 'Pp3c18_4480' => 'ppa', 'Pp3c19_13030' => 'ppa', 'Pp3c1_33620' => 'ppa', 'Pp3c2_9380' => 'ppa', 'PRCOL_00001023' => 'pco', 'Prupe.3G216300' => 'ppe', 'Prupe.4G019500' => 'ppe', 'Prupe.6G092500' => 'ppe', 'Prupe.6G119200' => 'ppe', 'Psat0s1945g0080' => 'psa', 'Psat0s4167g0040' => 'psa', 'Psat1g185800' => 'psa', 'Psat4g006440' => 'psa', 'Psat4g006480' => 'psa', 'Psat4g168120' => 'psa', 'Psat5g255680' => 'psa', 'Psat5g261760' => 'psa', 'Psat7g222120' => 'psa', 'PSO063G7252' => 'pso', 'PSO170G4778' => 'pso', 'PSO210G2249' => 'pso', 'PSO339G2411' => 'pso', 'PSO339G2457' => 'pso', 'PSO339G2854' => 'pso', 'PSO339G4288' => 'pso', 'PSO339G4615' => 'pso', 'PSO384G2796' => 'pso', 'PSO384G2940' => 'pso', 'PSO384G4227' => 'pso', 'PSO478G1425' => 'pso', 'PSO541G3863' => 'pso', 'PSO675G0507' => 'pso', 'PSO782G0338' => 'pso', 'PSO832G0644' => 'pso', 'QL01p013664' => 'qlo', 'QL01p036598' => 'qlo', 'QL05p072984' => 'qlo', 'QL08p005768' => 'qlo', 'QL08p032743' => 'qlo', 'QL93p0073_0439' => 'qlo', 'QL93p0073_0444' => 'qlo', 'RcHm_v2.0_Chr5g0002851' => 'rch', 'RcHm_v2.0_Chr5g0055201' => 'rch', 'RcHm_v2.0_Chr5g0061191' => 'rch', 'RcHm_v2.0_Chr7g0203231' => 'rch', 'Rhsim01G0208100' => 'rsi', 'Rhsim01G0208200' => 'rsi', 'Rhsim02G0106500' => 'rsi', 'Rhsim03G0107900' => 'rsi', 'Rhsim06G0163400' => 'rsi', 'Rhsim13G0105200' => 'rsi', 'Sabra04G0006300' => 'sbr', 'Sabra04G0127000' => 'sbr', 'Sabra08G0148700' => 'sbr', 'Sabra09G0117400' => 'sbr', 'SalBow1G3326' => 'sbo', 'SalBow3G3228' => 'sbo', 'SalBow6G1634' => 'sbo', 'SalBow6G3603' => 'sbo', 'SalBow6G5266' => 'sbo', 'SalBow7G2265' => 'sbo', 'SalBow8G0850' => 'sbo', 'SalBow8G2592' => 'sbo', 'Sc05g0009240' => 'sci', 'Sc12g0002300' => 'sci', 'Sc21g0000100' => 'sci', 'Sc21g0004720' => 'sci', 'Sed0002949' => 'sed', 'Sed0004114' => 'sed', 'Sed0004306' => 'sed', 'Sed0006172' => 'sed', 'Sed0008413' => 'sed', 'Sed0013809' => 'sed', 'Sed0019556' => 'sed', 'SEGI_03570' => 'sgi', 'SEGI_07859' => 'sgi', 'SEGI_15042' => 'sgi', 'SEGI_16263' => 'sgi', 'SEGI_16552' => 'sgi', 'SEGI_24331' => 'sgi', 'SEGI_27316' => 'sgi', 'SEGI_29521' => 'sgi', 'SEGI_41342' => 'sgi', 'SGA_v2.0_scaffold27G11617' => 'sas', 'SGA_v2.0_scaffold316G48428' => 'sas', 'SGA_v2.0_scaffold49G18261' => 'sas', 'SGA_v2.0_scaffold7G03831' => 'sas', 'SGA_v2.0_scaffold93G28359' => 'sas', 'SHI02210' => 'shi', 'SHI06028' => 'shi', 'SHI06321' => 'shi', 'SMO111G0012' => 'smo', 'SMO228G0080' => 'smo', 'SMO356G0756' => 'smo', 'Solyc02g080620.3' => 'sly', 'Solyc06g074530.1' => 'sly', 'Solyc11g066890.1' => 'sly', 'Solyc11g072520.3' => 'sly', 'Sopen02g025330' => 'spe', 'Sopen06g031000' => 'spe', 'Sopen09g008240' => 'spe', 'Sopen09g025210' => 'spe', 'Sopen11g026600' => 'spe', 'Sopen11g030170' => 'spe', 'Sp1g10420' => 'spa', 'Sp3g06570' => 'spa', 'Sp4g10660' => 'spa', 'Sp5g16460' => 'spa', 'Sp6g22710' => 'spa', 'TAR365G0112' => 'tar', 'TAR369G0717' => 'tar', 'TAR374G0976' => 'tar', 'TAR623G1128' => 'tar', 'TAR626G1937' => 'tar', 'TAR627G0123' => 'tar', 'TAR628G0305' => 'tar', 'TAR636G1176' => 'tar', 'TAR636G2442' => 'tar', 'THA.LOC104800556' => 'tha', 'THA.LOC104809501' => 'tha', 'THA.LOC104815126' => 'tha', 'THA.LOC104815732' => 'tha', 'THA.LOC104823528' => 'tha', 'Thecc.02G365600' => 'tca', 'Thecc.06G222300' => 'tca', 'Thecc.09G261800' => 'tca', 'Thecc.09G291400' => 'tca', 'Thhalv10003028m.g' => 'esa', 'Thhalv10007886m.g' => 'esa', 'Thhalv10016085m.g' => 'esa', 'Thhalv10016681m.g' => 'esa', 'Thhalv10020951m.g' => 'esa', 'TPR.G15598' => 'tpr', 'TPR.G29305' => 'tpr', 'TPR.G32395' => 'tpr', 'TPR.G36998' => 'tpr', 'TPR.G4227' => 'tpr', 'TWI18G1433' => 'twi', 'TWI31G0755' => 'twi', 'TWI38G0912' => 'twi', 'TWI75G1097' => 'twi', 'TWI75G1619' => 'twi', 'TWI79G1336' => 'twi', 'unitig_0.g943' => 'ugi', 'unitig_0.g944' => 'ugi', 'unitig_22.g6646' => 'ugi', 'unitig_37.g12681' => 'ugi', 'unitig_8.g3290' => 'ugi', 'vmacro03278' => 'vma', 'vmacro12197' => 'vma', 'vmacro14478' => 'vma', 'vmacro15787' => 'vma', 'vmacro15789' => 'vma', 'vmacro15790' => 'vma', 'vmacro15806' => 'vma', 'vmacro22907' => 'vma', 'vmacro22908' => 'vma', 'vmacro22909' => 'vma', 'vmacro23108' => 'vma', 'VMungo0540G0540' => 'vmu', 'VMungo0540G2468' => 'vmu', 'VMungo1080G0390' => 'vmu', 'VMungo1080G1165' => 'vmu', 'VMungo1127G0170' => 'vmu', 'VMungo1127G2099' => 'vmu', 'VMungo1215G3013' => 'vmu', 'Zm00001eb013110' => 'zma', 'Zm00001eb084260' => 'zma', 'Zm00001eb096110' => 'zma', 'Zm00001eb217510' => 'zma', 'Zm00001eb322550' => 'zma', 'Zm00001eb390770' => 'zma', 'Zm00001eb397170' => 'zma', 'Zm00001eb404610' => 'zma', 'Zm00001eb421790' => 'zma' ), 'gf_id' => 'HOM05D000911', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000911' ), 'data_identifier' => 'HOM05D000911', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000911', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27780' => 'bna', 'A03p35380' => 'bna', 'A04p21160' => 'bna', 'A05p40570' => 'bna', 'A06p26900' => 'bna', 'A08p33230' => 'bna', 'A09p65960' => 'bna', 'A10p18290' => 'bna', 'Aa31LG1G12990' => 'aar', 'Aa31LG1G2980' => 'aar', 'Aa31LG4G14320' => 'aar', 'Aa31LG7G11800' => 'aar', 'Aa31sc36G50' => 'aar', 'Aa31sc36G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3721' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5459' => 'aag', 'Actinidia03028' => 'ach', 'Actinidia03753' => 'ach', 'Actinidia04187' => 'ach', 'Actinidia05509' => 'ach', 'Actinidia24180' => 'ach', 'Actinidia26906' => 'ach', 'Actinidia37097' => 'ach', 'Actinidia38249' => 'ach', 'Ah.01g003470' => 'amhyb', 'Ah.01g004580' => 'amhyb', 'Ah.01g014850' => 'amhyb', 'Ah.01g016830' => 'amhyb', 'Ah.14g088000' => 'amhyb', 'AL1G22980' => 'aly', 'AL3G18990' => 'aly', 'AL4G22440' => 'aly', 'AL4G33180' => 'aly', 'AL5G22920' => 'aly', 'AL6G33660' => 'aly', 'AL8G20720' => 'aly', 'Aqoxy1G00935' => 'aox', 'Aqoxy1G02094' => 'aox', 'Aqoxy2G01239' => 'aox', 'Aqoxy4G01870' => 'aox', 'Aqoxy7G00450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.36ZVTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71EM27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5D6C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH3WRE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3NCM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RIM768' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YB5YRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z36GDV' => 'arhy', 'AT1G08250' => 'ath', 'AT1G11790' => 'ath', 'AT2G27820' => 'ath', 'AT3G07630' => 'ath', 'AT3G44720' => 'ath', 'AT5G22630' => 'ath', 'ATR0693G304' => 'atr', 'ATR0794G109' => 'atr', 'ATR0820G120' => 'atr', 'ATR1159G064' => 'atr', 'Atru.chr10.2239' => 'acertr', 'Atru.chr3.3371' => 'acertr', 'Atru.chr6.3202' => 'acertr', 'AUR62006499' => 'cqu', 'AUR62012718' => 'cqu', 'AUR62021938' => 'cqu', 'AUR62023932' => 'cqu', 'AUR62025034' => 'cqu', 'AUR62025035' => 'cqu', 'AUR62038307' => 'cqu', 'AUR62043466' => 'cqu', 'BcaB02g10748' => 'bca', 'BcaB03g13231' => 'bca', 'BcaB03g14689' => 'bca', 'BcaB05g22716' => 'bca', 'BcaB06g28172' => 'bca', 'BcaB08g36413' => 'bca', 'BcaC01g02186' => 'bca', 'BcaC01g04272' => 'bca', 'BcaC02g08080' => 'bca', 'BcaC02g08227' => 'bca', 'BcaC03g13901' => 'bca', 'BcaC04g19593' => 'bca', 'BcaC04g20874' => 'bca', 'BcaC05g29557' => 'bca', 'BcaC06g35505' => 'bca', 'BcaC07g41954' => 'bca', 'BcaC07g41955' => 'bca', 'BcaC07g41956' => 'bca', 'BcaC07g42519' => 'bca', 'BcaC07g42520' => 'bca', 'BcaC07g42523' => 'bca', 'BcaC07g42524' => 'bca', 'BcaC07g42525' => 'bca', 'BcaC08g47480' => 'bca', 'BcaC08g47481' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00530' => 'bna', 'BolC2t07178H' => 'bol', 'BolC3t16567H' => 'bol', 'BolC4t27234H' => 'bol', 'BolC5t29728H' => 'bol', 'BolC5t34622H' => 'bol', 'BolC6t40321H' => 'bol', 'BolC7t42028H' => 'bol', 'BolC8t49125H' => 'bol', 'BolC8t52538H' => 'bol', 'BolC8t52539H' => 'bol', 'BolC9t56681H' => 'bol', 'BolC9t58266H' => 'bol', 'BolSC21t60294H' => 'bol', 'BraA02t05670Z' => 'bra', 'BraA03t12716Z' => 'bra', 'BraA04t17685Z' => 'bra', 'BraA05t22788Z' => 'bra', 'BraA06t24032Z' => 'bra', 'BraA06t25625Z' => 'bra', 'BraA07t27930Z' => 'bra', 'BraA08t35242Z' => 'bra', 'BraA09t38609Z' => 'bra', 'BraA10t43905Z' => 'bra', 'C02p11060' => 'bna', 'C03p42990' => 'bna', 'C03p67310' => 'bna', 'C04p56990' => 'bna', 'C04p58660' => 'bna', 'C05p09890' => 'bna', 'C05p59680' => 'bna', 'C06p19830' => 'bna', 'C06p53040' => 'bna', 'C07p15230' => 'bna', 'C08p50070' => 'bna', 'C08p50090' => 'bna', 'C09p38330' => 'bna', 'C09p53940' => 'bna', 'CAN.G1014.1' => 'can', 'CAN.G644.30' => 'can', 'CAN.G84.47' => 'can', 'CAN.G919.8' => 'can', 'CANSAT54G0113' => 'cansat', 'CANSAT54G1286' => 'cansat', 'CANSAT64G1020' => 'cansat', 'CARHR008080' => 'chi', 'CARHR008090' => 'chi', 'CARHR012130' => 'chi', 'CARHR038390' => 'chi', 'CARHR082330' => 'chi', 'CARHR120520' => 'chi', 'CARHR151470' => 'chi', 'CARHR190950' => 'chi', 'Carub.0001s0760' => 'cru', 'Carub.0001s1146' => 'cru', 'Carub.0003s0721' => 'cru', 'Carub.0004s0858' => 'cru', 'Carub.0005s1040' => 'cru', 'Carub.0006s2035' => 'cru', 'Carub.0015s0005' => 'cru', 'Ca_01607_v3' => 'car', 'Ca_01677_v3' => 'car', 'Ca_06087_v3' => 'car', 'Ca_19238_v3' => 'car', 'Ca_19373_v3' => 'car', 'Ca_21079_v3' => 'car', 'CBR_g54016' => 'cbr', 'CBR_g54018' => 'cbr', 'CBR_g54020' => 'cbr', 'Cc01_g09780' => 'ccan', 'Cc01_g11680' => 'ccan', 'Cc02_g15610' => 'ccan', 'Cc05_g04350' => 'ccan', 'Cc09_g01580' => 'ccan', 'CDE01G0795' => 'cde', 'CDE02G2024' => 'cde', 'CDE02G2260' => 'cde', 'CDE02G4561' => 'cde', 'CDE05G2733' => 'cde', 'CDE05G3422' => 'cde', 'CDE06G2003' => 'cde', 'CDE08G0576' => 'cde', 'CDE09G0048' => 'cde', 'CDE11G0805' => 'cde', 'Cfa003644' => 'cfa', 'Cfa006290' => 'cfa', 'Cfa010080' => 'cfa', 'Cfa011376' => 'cfa', 'Cfa011576' => 'cfa', 'Cfa011577' => 'cfa', 'Cfa014389' => 'cfa', 'Ciclev10006044m.g' => 'ccl', 'Ciclev10006954m.g' => 'ccl', 'Ciclev10015131m.g' => 'ccl', 'Ciclev10015580m.g' => 'ccl', 'Ciclev10028359m.g' => 'ccl', 'Ciclev10028573m.g' => 'ccl', 'CiPaw.03G159300' => 'cil', 'CiPaw.04G115100' => 'cil', 'CiPaw.09G092800' => 'cil', 'CiPaw.10G071800' => 'cil', 'CiPaw.13G105800' => 'cil', 'CiPaw.13G141000' => 'cil', 'CiPaw.14G103400' => 'cil', 'ClCG01G012700' => 'cla', 'ClCG01G012720' => 'cla', 'ClCG01G021920' => 'cla', 'ClCG02G008870' => 'cla', 'ClCG02G020840' => 'cla', 'ClCG02G021930' => 'cla', 'COL.COLO4_19302' => 'col', 'COL.COLO4_25262' => 'col', 'COL.COLO4_31788' => 'col', 'Cpa.g.c34684' => 'cpa', 'Cpa.g.c36520.1' => 'cpa', 'Cpa.g.c45626' => 'cpa', 'Cpa.g.sc121.17' => 'cpa', 'Cpa.g.sc13.22' => 'cpa', 'Cpa.g.sc87.88' => 'cpa', 'Cre06.g261800' => 'cre', 'CsaV3_1G014500' => 'csa', 'CsaV3_1G014510' => 'csa', 'CsaV3_2G034880' => 'csa', 'CsaV3_6G014760' => 'csa', 'CsaV3_6G021500' => 'csa', 'CsaV3_6G048980' => 'csa', 'CSS0002511' => 'camsi', 'CSS0007556' => 'camsi', 'CSS0008532' => 'camsi', 'CSS0009709' => 'camsi', 'CSS0010486' => 'camsi', 'CSS0016768' => 'camsi', 'CSS0023512' => 'camsi', 'CSS0025341' => 'camsi', 'CSS0027999' => 'camsi', 'CSS0028944' => 'camsi', 'CSS0032292' => 'camsi', 'CSS0032464' => 'camsi', 'CSS0037153' => 'camsi', 'CSS0039256' => 'camsi', 'CSS0048392' => 'camsi', 'CSS0050458' => 'camsi', 'DCAR_004224' => 'dca', 'DCAR_006147' => 'dca', 'DCAR_006465' => 'dca', 'DCAR_008159' => 'dca', 'DCAR_012164' => 'dca', 'DCAR_019764' => 'dca', 'Dinv05418' => 'din', 'Dinv10839' => 'din', 'Dinv12521' => 'din', 'Dinv13900' => 'din', 'Dinv29426' => 'din', 'Duzib150G0263' => 'dzi', 'Duzib168G1178' => 'dzi', 'Duzib168G1924' => 'dzi', 'Duzib170G0299' => 'dzi', 'Duzib170G0813' => 'dzi', 'Duzib235G1128' => 'dzi', 'Duzib248G1060' => 'dzi', 'ECA232G1910' => 'eca', 'ECA233G4621' => 'eca', 'ECA238G1216' => 'eca', 'ECA238G1784' => 'eca', 'ECA248G1242' => 'eca', 'EL10Ac8g20071' => 'bvu', 'EL10Ac9g21086' => 'bvu', 'EL10Ac9g22407' => 'bvu', 'EL10Ac9g22412' => 'bvu', 'Eucgr.A01119' => 'egr', 'Eucgr.E04043' => 'egr', 'Eucgr.J00428' => 'egr', 'Eucgr.J00958' => 'egr', 'FAN11G3091' => 'fan', 'FAN11G3651' => 'fan', 'FAN16G2566' => 'fan', 'FAN21G3155' => 'fan', 'FAN21G3400' => 'fan', 'FAN21G3543' => 'fan', 'FAN25G0234' => 'fan', 'FAN25G1422' => 'fan', 'FAN25G3392' => 'fan', 'FvH4_3g01940' => 'fve', 'FvH4_3g29870' => 'fve', 'FvH4_3g33680' => 'fve', 'Glyma.09G004200' => 'gma', 'Glyma.11G151288' => 'gma', 'Glyma.11G189100' => 'gma', 'Glyma.12G072500' => 'gma', 'Glyma.12G085500' => 'gma', 'Glyma.12G181800' => 'gma', 'Glyma.12G193000' => 'gma', 'Glyma.13G309300' => 'gma', 'Glyma.13G319000' => 'gma', 'Glyma.17G012600' => 'gma', 'Gohir.A06G148600' => 'ghi', 'Gohir.A07G115800' => 'ghi', 'Gohir.A08G003600' => 'ghi', 'Gohir.A09G093300' => 'ghi', 'Gohir.A09G105400' => 'ghi', 'Gohir.A09G105500' => 'ghi', 'Gohir.D06G154600' => 'ghi', 'Gohir.D07G120200' => 'ghi', 'Gohir.D08G013900' => 'ghi', 'Gohir.D09G093100' => 'ghi', 'Gohir.D09G102200' => 'ghi', 'Gohir.D09G102300' => 'ghi', 'Gorai.001G129400' => 'gra', 'Gorai.004G008200' => 'gra', 'Gorai.006G109800' => 'gra', 'Gorai.006G119500' => 'gra', 'Gorai.006G121300' => 'gra', 'Gorai.010G180700' => 'gra', 'GSVIVG01012716001' => 'vvi', 'GSVIVG01025118001' => 'vvi', 'GSVIVG01030439001' => 'vvi', 'GSVIVG01031397001' => 'vvi', 'HanXRQChr01g0004201' => 'han', 'HanXRQChr02g0054941' => 'han', 'HanXRQChr05g0141811' => 'han', 'HanXRQChr07g0197751' => 'han', 'HanXRQChr11g0346691' => 'han', 'HanXRQChr13g0396971' => 'han', 'HanXRQChr14g0432951' => 'han', 'HanXRQChr14g0452001' => 'han', 'HanXRQChr15g0496681' => 'han', 'HanXRQChr17g0557491' => 'han', 'HanXRQChr17g0557501' => 'han', 'Haze_06809' => 'cav', 'Haze_12852' => 'cav', 'Haze_15850' => 'cav', 'Haze_23446' => 'cav', 'Haze_23942' => 'cav', 'Haze_23943' => 'cav', 'Hma1.2p1_0091F.1_g046450' => 'hma', 'Hma1.2p1_0128F.1_g059910' => 'hma', 'Hma1.2p1_0249F.1_g102260' => 'hma', 'Hma1.2p1_0453F.1_g156190' => 'hma', 'Hma1.2p1_0695F.1_g204380' => 'hma', 'Hma1.2p1_0749F.1_g212650' => 'hma', 'Hma1.2p1_2156F.1_g315420' => 'hma', 'Hma1.2p1_2686F.1_g326940' => 'hma', 'HPP92_006428' => 'vpl', 'HPP92_012069' => 'vpl', 'HPP92_014129' => 'vpl', 'HPP92_014133' => 'vpl', 'HPP92_017315' => 'vpl', 'HPP92_026445' => 'vpl', 'HPP92_026446' => 'vpl', 'Hund00774' => 'sun', 'Hund07682' => 'sun', 'Hund21413' => 'sun', 'Hund23462' => 'sun', 'Hund23463' => 'sun', 'Lalb_Chr03g0027911' => 'lal', 'Lalb_Chr13g0304271' => 'lal', 'Lalb_Chr19g0137471' => 'lal', 'Lalb_Chr22g0350651' => 'lal', 'Lalb_Chr24g0395151' => 'lal', 'Lj1A1231T40' => 'lonja', 'Lj1A221T48' => 'lonja', 'Lj1C924T12' => 'lonja', 'Lj2C993G6' => 'lonja', 'Lj3g0005790' => 'lja', 'Lj3g0015432' => 'lja', 'Lj3g0017722' => 'lja', 'Lj3g0018497' => 'lja', 'Lj4g0025071' => 'lja', 'Lsat_1_v5_gn_1_129680' => 'lsa', 'Lsat_1_v5_gn_2_25321' => 'lsa', 'Lsat_1_v5_gn_2_95461' => 'lsa', 'Lsat_1_v5_gn_4_159620' => 'lsa', 'Lsat_1_v5_gn_6_41301' => 'lsa', 'Lsat_1_v5_gn_6_74660' => 'lsa', 'Lsat_1_v5_gn_7_11520' => 'lsa', 'Lsat_1_v5_gn_9_67680' => 'lsa', 'Manes.04G008300' => 'mes', 'Manes.04G008400' => 'mes', 'Manes.04G026500' => 'mes', 'Manes.10G135300' => 'mes', 'Manes.11G157300' => 'mes', 'Manes.12G074000' => 'mes', 'Manes.16G006200' => 'mes', 'Manes.17G026400' => 'mes', 'Mapoly0024s0086' => 'mpo', 'Mapoly0024s0087' => 'mpo', 'Mapoly0071s0057' => 'mpo', 'Mapoly0204s0012' => 'mpo', 'MBI04_g37681_MAGBIO' => 'mbi', 'MBI05_g17779_MAGBIO' => 'mbi', 'MBI12_g31184_MAGBIO' => 'mbi', 'MBI17_g11083_MAGBIO' => 'mbi', 'MBI18_g03883_MAGBIO' => 'mbi', 'MBI18_g28940_MAGBIO' => 'mbi', 'MCO01G690' => 'mco', 'MD03G1109900' => 'mdo', 'MD03G1134800' => 'mdo', 'MD05G1348000' => 'mdo', 'MD10G1322400' => 'mdo', 'MD11G1123300' => 'mdo', 'MD11G1157600' => 'mdo', 'Medtr2g084875' => 'mtr', 'Medtr2g088130' => 'mtr', 'Medtr4g055310' => 'mtr', 'Medtr4g061070' => 'mtr', 'Medtr4g132250' => 'mtr', 'MELO3C004795.2' => 'cme', 'MELO3C004797.2' => 'cme', 'MELO3C007396.2' => 'cme', 'MELO3C019277.2' => 'cme', 'MELO3C021449.2' => 'cme', 'MELO3C025736.2' => 'cme', 'Migut.D02175' => 'egut', 'Migut.H01573' => 'egut', 'Migut.M01327' => 'egut', 'Migut.N02513' => 'egut', 'MSTRG.14638' => 'ama', 'MSTRG.18632' => 'ama', 'MSTRG.7203' => 'ama', 'Nitab4.5_0000533g0140' => 'nta', 'Nitab4.5_0000888g0150' => 'nta', 'Nitab4.5_0001453g0040' => 'nta', 'Nitab4.5_0002827g0090' => 'nta', 'Nitab4.5_0003082g0040' => 'nta', 'Nitab4.5_0007799g0040' => 'nta', 'Nitab4.5_0008983g0010' => 'nta', 'Nitab4.5_0009017g0020' => 'nta', 'Nn1g02132' => 'nnu', 'Nn1g03492' => 'nnu', 'Nn1g03493' => 'nnu', 'Nn1g03494' => 'nnu', 'Nn1g07164' => 'nnu', 'Nn1g07291' => 'nnu', 'Nn2g10655' => 'nnu', 'Nn2g11652' => 'nnu', 'Nn2g14008' => 'nnu', 'Nn3g17476' => 'nnu', 'Nn3g17477' => 'nnu', 'Nn4g22370' => 'nnu', 'Nn4g25255' => 'nnu', 'Nn5g27755' => 'nnu', 'Nn6g34260' => 'nnu', 'Nn6g35041' => 'nnu', 'Oeu005924.1' => 'oeu', 'Oeu008383.1' => 'oeu', 'Oeu014928.1' => 'oeu', 'Oeu019889.1' => 'oeu', 'Oeu022271.1' => 'oeu', 'Oeu025271.1' => 'oeu', 'Oeu036302.1' => 'oeu', 'Oeu044100.1' => 'oeu', 'Os01g0528300' => 'osa', 'Os03g0286200' => 'osa', 'Os04g0406600' => 'osa', 'Os07g0512000' => 'osa', 'Os07g0694600' => 'osa', 'Os08g0411000' => 'osa', 'Os09g0565700' => 'osa', 'Os09g0566050' => 'osa', 'Os10g0523700' => 'osa', 'Peaxi162Scf00002g00514' => 'pax', 'Peaxi162Scf00047g01817' => 'pax', 'Peaxi162Scf00114g00001' => 'pax', 'Peaxi162Scf00147g00613' => 'pax', 'Peaxi162Scf00389g00425' => 'pax', 'PGR042G1139' => 'pgr', 'PGR042G3273' => 'pgr', 'PGR102G2180' => 'pgr', 'PGR119G0234' => 'pgr', 'PGR119G0668' => 'pgr', 'PGSC0003DMG400007122' => 'stu', 'PGSC0003DMG400016478' => 'stu', 'PGSC0003DMG400025374' => 'stu', 'PGSC0003DMG400026536' => 'stu', 'Phvul.003G079600' => 'pvu', 'Phvul.005G115600' => 'pvu', 'Phvul.005G127100' => 'pvu', 'Phvul.006G149500' => 'pvu', 'Phvul.006G149600' => 'pvu', 'Phvul.011G071800' => 'pvu', 'Phvul.011G090400' => 'pvu', 'Potri.004G013400' => 'ptr', 'Potri.004G188100' => 'ptr', 'Potri.008G195500' => 'ptr', 'Potri.009G148800' => 'ptr', 'Potri.011G004700' => 'ptr', 'Pp3c17_22810' => 'ppa', 'Pp3c18_4480' => 'ppa', 'Pp3c19_13030' => 'ppa', 'Pp3c1_33620' => 'ppa', 'Pp3c2_9380' => 'ppa', 'PRCOL_00001023' => 'pco', 'Prupe.3G216300' => 'ppe', 'Prupe.4G019500' => 'ppe', 'Prupe.6G092500' => 'ppe', 'Prupe.6G119200' => 'ppe', 'Psat0s1945g0080' => 'psa', 'Psat0s4167g0040' => 'psa', 'Psat1g185800' => 'psa', 'Psat4g006440' => 'psa', 'Psat4g006480' => 'psa', 'Psat4g168120' => 'psa', 'Psat5g255680' => 'psa', 'Psat5g261760' => 'psa', 'Psat7g222120' => 'psa', 'PSO063G7252' => 'pso', 'PSO170G4778' => 'pso', 'PSO210G2249' => 'pso', 'PSO339G2411' => 'pso', 'PSO339G2457' => 'pso', 'PSO339G2854' => 'pso', 'PSO339G4288' => 'pso', 'PSO339G4615' => 'pso', 'PSO384G2796' => 'pso', 'PSO384G2940' => 'pso', 'PSO384G4227' => 'pso', 'PSO478G1425' => 'pso', 'PSO541G3863' => 'pso', 'PSO675G0507' => 'pso', 'PSO782G0338' => 'pso', 'PSO832G0644' => 'pso', 'QL01p013664' => 'qlo', 'QL01p036598' => 'qlo', 'QL05p072984' => 'qlo', 'QL08p005768' => 'qlo', 'QL08p032743' => 'qlo', 'QL93p0073_0439' => 'qlo', 'QL93p0073_0444' => 'qlo', 'RcHm_v2.0_Chr5g0002851' => 'rch', 'RcHm_v2.0_Chr5g0055201' => 'rch', 'RcHm_v2.0_Chr5g0061191' => 'rch', 'RcHm_v2.0_Chr7g0203231' => 'rch', 'Rhsim01G0208100' => 'rsi', 'Rhsim01G0208200' => 'rsi', 'Rhsim02G0106500' => 'rsi', 'Rhsim03G0107900' => 'rsi', 'Rhsim06G0163400' => 'rsi', 'Rhsim13G0105200' => 'rsi', 'Sabra04G0006300' => 'sbr', 'Sabra04G0127000' => 'sbr', 'Sabra08G0148700' => 'sbr', 'Sabra09G0117400' => 'sbr', 'SalBow1G3326' => 'sbo', 'SalBow3G3228' => 'sbo', 'SalBow6G1634' => 'sbo', 'SalBow6G3603' => 'sbo', 'SalBow6G5266' => 'sbo', 'SalBow7G2265' => 'sbo', 'SalBow8G0850' => 'sbo', 'SalBow8G2592' => 'sbo', 'Sc05g0009240' => 'sci', 'Sc12g0002300' => 'sci', 'Sc21g0000100' => 'sci', 'Sc21g0004720' => 'sci', 'Sed0002949' => 'sed', 'Sed0004114' => 'sed', 'Sed0004306' => 'sed', 'Sed0006172' => 'sed', 'Sed0008413' => 'sed', 'Sed0013809' => 'sed', 'Sed0019556' => 'sed', 'SEGI_03570' => 'sgi', 'SEGI_07859' => 'sgi', 'SEGI_15042' => 'sgi', 'SEGI_16263' => 'sgi', 'SEGI_16552' => 'sgi', 'SEGI_24331' => 'sgi', 'SEGI_27316' => 'sgi', 'SEGI_29521' => 'sgi', 'SEGI_41342' => 'sgi', 'SGA_v2.0_scaffold27G11617' => 'sas', 'SGA_v2.0_scaffold316G48428' => 'sas', 'SGA_v2.0_scaffold49G18261' => 'sas', 'SGA_v2.0_scaffold7G03831' => 'sas', 'SGA_v2.0_scaffold93G28359' => 'sas', 'SHI02210' => 'shi', 'SHI06028' => 'shi', 'SHI06321' => 'shi', 'SMO111G0012' => 'smo', 'SMO228G0080' => 'smo', 'SMO356G0756' => 'smo', 'Solyc02g080620.3' => 'sly', 'Solyc06g074530.1' => 'sly', 'Solyc11g066890.1' => 'sly', 'Solyc11g072520.3' => 'sly', 'Sopen02g025330' => 'spe', 'Sopen06g031000' => 'spe', 'Sopen09g008240' => 'spe', 'Sopen09g025210' => 'spe', 'Sopen11g026600' => 'spe', 'Sopen11g030170' => 'spe', 'Sp1g10420' => 'spa', 'Sp3g06570' => 'spa', 'Sp4g10660' => 'spa', 'Sp5g16460' => 'spa', 'Sp6g22710' => 'spa', 'TAR365G0112' => 'tar', 'TAR369G0717' => 'tar', 'TAR374G0976' => 'tar', 'TAR623G1128' => 'tar', 'TAR626G1937' => 'tar', 'TAR627G0123' => 'tar', 'TAR628G0305' => 'tar', 'TAR636G1176' => 'tar', 'TAR636G2442' => 'tar', 'THA.LOC104800556' => 'tha', 'THA.LOC104809501' => 'tha', 'THA.LOC104815126' => 'tha', 'THA.LOC104815732' => 'tha', 'THA.LOC104823528' => 'tha', 'Thecc.02G365600' => 'tca', 'Thecc.06G222300' => 'tca', 'Thecc.09G261800' => 'tca', 'Thecc.09G291400' => 'tca', 'Thhalv10003028m.g' => 'esa', 'Thhalv10007886m.g' => 'esa', 'Thhalv10016085m.g' => 'esa', 'Thhalv10016681m.g' => 'esa', 'Thhalv10020951m.g' => 'esa', 'TPR.G15598' => 'tpr', 'TPR.G29305' => 'tpr', 'TPR.G32395' => 'tpr', 'TPR.G36998' => 'tpr', 'TPR.G4227' => 'tpr', 'TWI18G1433' => 'twi', 'TWI31G0755' => 'twi', 'TWI38G0912' => 'twi', 'TWI75G1097' => 'twi', 'TWI75G1619' => 'twi', 'TWI79G1336' => 'twi', 'unitig_0.g943' => 'ugi', 'unitig_0.g944' => 'ugi', 'unitig_22.g6646' => 'ugi', 'unitig_37.g12681' => 'ugi', 'unitig_8.g3290' => 'ugi', 'vmacro03278' => 'vma', 'vmacro12197' => 'vma', 'vmacro14478' => 'vma', 'vmacro15787' => 'vma', 'vmacro15789' => 'vma', 'vmacro15790' => 'vma', 'vmacro15806' => 'vma', 'vmacro22907' => 'vma', 'vmacro22908' => 'vma', 'vmacro22909' => 'vma', 'vmacro23108' => 'vma', 'VMungo0540G0540' => 'vmu', 'VMungo0540G2468' => 'vmu', 'VMungo1080G0390' => 'vmu', 'VMungo1080G1165' => 'vmu', 'VMungo1127G0170' => 'vmu', 'VMungo1127G2099' => 'vmu', 'VMungo1215G3013' => 'vmu', 'Zm00001eb013110' => 'zma', 'Zm00001eb084260' => 'zma', 'Zm00001eb096110' => 'zma', 'Zm00001eb217510' => 'zma', 'Zm00001eb322550' => 'zma', 'Zm00001eb390770' => 'zma', 'Zm00001eb397170' => 'zma', 'Zm00001eb404610' => 'zma', 'Zm00001eb421790' => 'zma' ) $gf_id = 'HOM05D000911' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000911' ) $data_identifier = 'HOM05D000911' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 16, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 5, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 6, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 8, 'nnu' => (int) 16, 'oeu' => (int) 8, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 5, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 16, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421790' $species_info = array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ) $local_species = 'cbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000911', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27780' => 'bna', 'A03p35380' => 'bna', 'A04p21160' => 'bna', 'A05p40570' => 'bna', 'A06p26900' => 'bna', 'A08p33230' => 'bna', 'A09p65960' => 'bna', 'A10p18290' => 'bna', 'Aa31LG1G12990' => 'aar', 'Aa31LG1G2980' => 'aar', 'Aa31LG4G14320' => 'aar', 'Aa31LG7G11800' => 'aar', 'Aa31sc36G50' => 'aar', 'Aa31sc36G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3721' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5459' => 'aag', 'Actinidia03028' => 'ach', 'Actinidia03753' => 'ach', 'Actinidia04187' => 'ach', 'Actinidia05509' => 'ach', 'Actinidia24180' => 'ach', 'Actinidia26906' => 'ach', 'Actinidia37097' => 'ach', 'Actinidia38249' => 'ach', 'Ah.01g003470' => 'amhyb', 'Ah.01g004580' => 'amhyb', 'Ah.01g014850' => 'amhyb', 'Ah.01g016830' => 'amhyb', 'Ah.14g088000' => 'amhyb', 'AL1G22980' => 'aly', 'AL3G18990' => 'aly', 'AL4G22440' => 'aly', 'AL4G33180' => 'aly', 'AL5G22920' => 'aly', 'AL6G33660' => 'aly', 'AL8G20720' => 'aly', 'Aqoxy1G00935' => 'aox', 'Aqoxy1G02094' => 'aox', 'Aqoxy2G01239' => 'aox', 'Aqoxy4G01870' => 'aox', 'Aqoxy7G00450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.36ZVTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71EM27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5D6C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH3WRE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3NCM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RIM768' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YB5YRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z36GDV' => 'arhy', 'AT1G08250' => 'ath', 'AT1G11790' => 'ath', 'AT2G27820' => 'ath', 'AT3G07630' => 'ath', 'AT3G44720' => 'ath', 'AT5G22630' => 'ath', 'ATR0693G304' => 'atr', 'ATR0794G109' => 'atr', 'ATR0820G120' => 'atr', 'ATR1159G064' => 'atr', 'Atru.chr10.2239' => 'acertr', 'Atru.chr3.3371' => 'acertr', 'Atru.chr6.3202' => 'acertr', 'AUR62006499' => 'cqu', 'AUR62012718' => 'cqu', 'AUR62021938' => 'cqu', 'AUR62023932' => 'cqu', 'AUR62025034' => 'cqu', 'AUR62025035' => 'cqu', 'AUR62038307' => 'cqu', 'AUR62043466' => 'cqu', 'BcaB02g10748' => 'bca', 'BcaB03g13231' => 'bca', 'BcaB03g14689' => 'bca', 'BcaB05g22716' => 'bca', 'BcaB06g28172' => 'bca', 'BcaB08g36413' => 'bca', 'BcaC01g02186' => 'bca', 'BcaC01g04272' => 'bca', 'BcaC02g08080' => 'bca', 'BcaC02g08227' => 'bca', 'BcaC03g13901' => 'bca', 'BcaC04g19593' => 'bca', 'BcaC04g20874' => 'bca', 'BcaC05g29557' => 'bca', 'BcaC06g35505' => 'bca', 'BcaC07g41954' => 'bca', 'BcaC07g41955' => 'bca', 'BcaC07g41956' => 'bca', 'BcaC07g42519' => 'bca', 'BcaC07g42520' => 'bca', 'BcaC07g42523' => 'bca', 'BcaC07g42524' => 'bca', 'BcaC07g42525' => 'bca', 'BcaC08g47480' => 'bca', 'BcaC08g47481' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00530' => 'bna', 'BolC2t07178H' => 'bol', 'BolC3t16567H' => 'bol', 'BolC4t27234H' => 'bol', 'BolC5t29728H' => 'bol', 'BolC5t34622H' => 'bol', 'BolC6t40321H' => 'bol', 'BolC7t42028H' => 'bol', 'BolC8t49125H' => 'bol', 'BolC8t52538H' => 'bol', 'BolC8t52539H' => 'bol', 'BolC9t56681H' => 'bol', 'BolC9t58266H' => 'bol', 'BolSC21t60294H' => 'bol', 'BraA02t05670Z' => 'bra', 'BraA03t12716Z' => 'bra', 'BraA04t17685Z' => 'bra', 'BraA05t22788Z' => 'bra', 'BraA06t24032Z' => 'bra', 'BraA06t25625Z' => 'bra', 'BraA07t27930Z' => 'bra', 'BraA08t35242Z' => 'bra', 'BraA09t38609Z' => 'bra', 'BraA10t43905Z' => 'bra', 'C02p11060' => 'bna', 'C03p42990' => 'bna', 'C03p67310' => 'bna', 'C04p56990' => 'bna', 'C04p58660' => 'bna', 'C05p09890' => 'bna', 'C05p59680' => 'bna', 'C06p19830' => 'bna', 'C06p53040' => 'bna', 'C07p15230' => 'bna', 'C08p50070' => 'bna', 'C08p50090' => 'bna', 'C09p38330' => 'bna', 'C09p53940' => 'bna', 'CAN.G1014.1' => 'can', 'CAN.G644.30' => 'can', 'CAN.G84.47' => 'can', 'CAN.G919.8' => 'can', 'CANSAT54G0113' => 'cansat', 'CANSAT54G1286' => 'cansat', 'CANSAT64G1020' => 'cansat', 'CARHR008080' => 'chi', 'CARHR008090' => 'chi', 'CARHR012130' => 'chi', 'CARHR038390' => 'chi', 'CARHR082330' => 'chi', 'CARHR120520' => 'chi', 'CARHR151470' => 'chi', 'CARHR190950' => 'chi', 'Carub.0001s0760' => 'cru', 'Carub.0001s1146' => 'cru', 'Carub.0003s0721' => 'cru', 'Carub.0004s0858' => 'cru', 'Carub.0005s1040' => 'cru', 'Carub.0006s2035' => 'cru', 'Carub.0015s0005' => 'cru', 'Ca_01607_v3' => 'car', 'Ca_01677_v3' => 'car', 'Ca_06087_v3' => 'car', 'Ca_19238_v3' => 'car', 'Ca_19373_v3' => 'car', 'Ca_21079_v3' => 'car', 'CBR_g54016' => 'cbr', 'CBR_g54018' => 'cbr', 'CBR_g54020' => 'cbr', 'Cc01_g09780' => 'ccan', 'Cc01_g11680' => 'ccan', 'Cc02_g15610' => 'ccan', 'Cc05_g04350' => 'ccan', 'Cc09_g01580' => 'ccan', 'CDE01G0795' => 'cde', 'CDE02G2024' => 'cde', 'CDE02G2260' => 'cde', 'CDE02G4561' => 'cde', 'CDE05G2733' => 'cde', 'CDE05G3422' => 'cde', 'CDE06G2003' => 'cde', 'CDE08G0576' => 'cde', 'CDE09G0048' => 'cde', 'CDE11G0805' => 'cde', 'Cfa003644' => 'cfa', 'Cfa006290' => 'cfa', 'Cfa010080' => 'cfa', 'Cfa011376' => 'cfa', 'Cfa011576' => 'cfa', 'Cfa011577' => 'cfa', 'Cfa014389' => 'cfa', 'Ciclev10006044m.g' => 'ccl', 'Ciclev10006954m.g' => 'ccl', 'Ciclev10015131m.g' => 'ccl', 'Ciclev10015580m.g' => 'ccl', 'Ciclev10028359m.g' => 'ccl', 'Ciclev10028573m.g' => 'ccl', 'CiPaw.03G159300' => 'cil', 'CiPaw.04G115100' => 'cil', 'CiPaw.09G092800' => 'cil', 'CiPaw.10G071800' => 'cil', 'CiPaw.13G105800' => 'cil', 'CiPaw.13G141000' => 'cil', 'CiPaw.14G103400' => 'cil', 'ClCG01G012700' => 'cla', 'ClCG01G012720' => 'cla', 'ClCG01G021920' => 'cla', 'ClCG02G008870' => 'cla', 'ClCG02G020840' => 'cla', 'ClCG02G021930' => 'cla', 'COL.COLO4_19302' => 'col', 'COL.COLO4_25262' => 'col', 'COL.COLO4_31788' => 'col', 'Cpa.g.c34684' => 'cpa', 'Cpa.g.c36520.1' => 'cpa', 'Cpa.g.c45626' => 'cpa', 'Cpa.g.sc121.17' => 'cpa', 'Cpa.g.sc13.22' => 'cpa', 'Cpa.g.sc87.88' => 'cpa', 'Cre06.g261800' => 'cre', 'CsaV3_1G014500' => 'csa', 'CsaV3_1G014510' => 'csa', 'CsaV3_2G034880' => 'csa', 'CsaV3_6G014760' => 'csa', 'CsaV3_6G021500' => 'csa', 'CsaV3_6G048980' => 'csa', 'CSS0002511' => 'camsi', 'CSS0007556' => 'camsi', 'CSS0008532' => 'camsi', 'CSS0009709' => 'camsi', 'CSS0010486' => 'camsi', 'CSS0016768' => 'camsi', 'CSS0023512' => 'camsi', 'CSS0025341' => 'camsi', 'CSS0027999' => 'camsi', 'CSS0028944' => 'camsi', 'CSS0032292' => 'camsi', 'CSS0032464' => 'camsi', 'CSS0037153' => 'camsi', 'CSS0039256' => 'camsi', 'CSS0048392' => 'camsi', 'CSS0050458' => 'camsi', 'DCAR_004224' => 'dca', 'DCAR_006147' => 'dca', 'DCAR_006465' => 'dca', 'DCAR_008159' => 'dca', 'DCAR_012164' => 'dca', 'DCAR_019764' => 'dca', 'Dinv05418' => 'din', 'Dinv10839' => 'din', 'Dinv12521' => 'din', 'Dinv13900' => 'din', 'Dinv29426' => 'din', 'Duzib150G0263' => 'dzi', 'Duzib168G1178' => 'dzi', 'Duzib168G1924' => 'dzi', 'Duzib170G0299' => 'dzi', 'Duzib170G0813' => 'dzi', 'Duzib235G1128' => 'dzi', 'Duzib248G1060' => 'dzi', 'ECA232G1910' => 'eca', 'ECA233G4621' => 'eca', 'ECA238G1216' => 'eca', 'ECA238G1784' => 'eca', 'ECA248G1242' => 'eca', 'EL10Ac8g20071' => 'bvu', 'EL10Ac9g21086' => 'bvu', 'EL10Ac9g22407' => 'bvu', 'EL10Ac9g22412' => 'bvu', 'Eucgr.A01119' => 'egr', 'Eucgr.E04043' => 'egr', 'Eucgr.J00428' => 'egr', 'Eucgr.J00958' => 'egr', 'FAN11G3091' => 'fan', 'FAN11G3651' => 'fan', 'FAN16G2566' => 'fan', 'FAN21G3155' => 'fan', 'FAN21G3400' => 'fan', 'FAN21G3543' => 'fan', 'FAN25G0234' => 'fan', 'FAN25G1422' => 'fan', 'FAN25G3392' => 'fan', 'FvH4_3g01940' => 'fve', 'FvH4_3g29870' => 'fve', 'FvH4_3g33680' => 'fve', 'Glyma.09G004200' => 'gma', 'Glyma.11G151288' => 'gma', 'Glyma.11G189100' => 'gma', 'Glyma.12G072500' => 'gma', 'Glyma.12G085500' => 'gma', 'Glyma.12G181800' => 'gma', 'Glyma.12G193000' => 'gma', 'Glyma.13G309300' => 'gma', 'Glyma.13G319000' => 'gma', 'Glyma.17G012600' => 'gma', 'Gohir.A06G148600' => 'ghi', 'Gohir.A07G115800' => 'ghi', 'Gohir.A08G003600' => 'ghi', 'Gohir.A09G093300' => 'ghi', 'Gohir.A09G105400' => 'ghi', 'Gohir.A09G105500' => 'ghi', 'Gohir.D06G154600' => 'ghi', 'Gohir.D07G120200' => 'ghi', 'Gohir.D08G013900' => 'ghi', 'Gohir.D09G093100' => 'ghi', 'Gohir.D09G102200' => 'ghi', 'Gohir.D09G102300' => 'ghi', 'Gorai.001G129400' => 'gra', 'Gorai.004G008200' => 'gra', 'Gorai.006G109800' => 'gra', 'Gorai.006G119500' => 'gra', 'Gorai.006G121300' => 'gra', 'Gorai.010G180700' => 'gra', 'GSVIVG01012716001' => 'vvi', 'GSVIVG01025118001' => 'vvi', 'GSVIVG01030439001' => 'vvi', 'GSVIVG01031397001' => 'vvi', 'HanXRQChr01g0004201' => 'han', 'HanXRQChr02g0054941' => 'han', 'HanXRQChr05g0141811' => 'han', 'HanXRQChr07g0197751' => 'han', 'HanXRQChr11g0346691' => 'han', 'HanXRQChr13g0396971' => 'han', 'HanXRQChr14g0432951' => 'han', 'HanXRQChr14g0452001' => 'han', 'HanXRQChr15g0496681' => 'han', 'HanXRQChr17g0557491' => 'han', 'HanXRQChr17g0557501' => 'han', 'Haze_06809' => 'cav', 'Haze_12852' => 'cav', 'Haze_15850' => 'cav', 'Haze_23446' => 'cav', 'Haze_23942' => 'cav', 'Haze_23943' => 'cav', 'Hma1.2p1_0091F.1_g046450' => 'hma', 'Hma1.2p1_0128F.1_g059910' => 'hma', 'Hma1.2p1_0249F.1_g102260' => 'hma', 'Hma1.2p1_0453F.1_g156190' => 'hma', 'Hma1.2p1_0695F.1_g204380' => 'hma', 'Hma1.2p1_0749F.1_g212650' => 'hma', 'Hma1.2p1_2156F.1_g315420' => 'hma', 'Hma1.2p1_2686F.1_g326940' => 'hma', 'HPP92_006428' => 'vpl', 'HPP92_012069' => 'vpl', 'HPP92_014129' => 'vpl', 'HPP92_014133' => 'vpl', 'HPP92_017315' => 'vpl', 'HPP92_026445' => 'vpl', 'HPP92_026446' => 'vpl', 'Hund00774' => 'sun', 'Hund07682' => 'sun', 'Hund21413' => 'sun', 'Hund23462' => 'sun', 'Hund23463' => 'sun', 'Lalb_Chr03g0027911' => 'lal', 'Lalb_Chr13g0304271' => 'lal', 'Lalb_Chr19g0137471' => 'lal', 'Lalb_Chr22g0350651' => 'lal', 'Lalb_Chr24g0395151' => 'lal', 'Lj1A1231T40' => 'lonja', 'Lj1A221T48' => 'lonja', 'Lj1C924T12' => 'lonja', 'Lj2C993G6' => 'lonja', 'Lj3g0005790' => 'lja', 'Lj3g0015432' => 'lja', 'Lj3g0017722' => 'lja', 'Lj3g0018497' => 'lja', 'Lj4g0025071' => 'lja', 'Lsat_1_v5_gn_1_129680' => 'lsa', 'Lsat_1_v5_gn_2_25321' => 'lsa', 'Lsat_1_v5_gn_2_95461' => 'lsa', 'Lsat_1_v5_gn_4_159620' => 'lsa', 'Lsat_1_v5_gn_6_41301' => 'lsa', 'Lsat_1_v5_gn_6_74660' => 'lsa', 'Lsat_1_v5_gn_7_11520' => 'lsa', 'Lsat_1_v5_gn_9_67680' => 'lsa', 'Manes.04G008300' => 'mes', 'Manes.04G008400' => 'mes', 'Manes.04G026500' => 'mes', 'Manes.10G135300' => 'mes', 'Manes.11G157300' => 'mes', 'Manes.12G074000' => 'mes', 'Manes.16G006200' => 'mes', 'Manes.17G026400' => 'mes', 'Mapoly0024s0086' => 'mpo', 'Mapoly0024s0087' => 'mpo', 'Mapoly0071s0057' => 'mpo', 'Mapoly0204s0012' => 'mpo', 'MBI04_g37681_MAGBIO' => 'mbi', 'MBI05_g17779_MAGBIO' => 'mbi', 'MBI12_g31184_MAGBIO' => 'mbi', 'MBI17_g11083_MAGBIO' => 'mbi', 'MBI18_g03883_MAGBIO' => 'mbi', 'MBI18_g28940_MAGBIO' => 'mbi', 'MCO01G690' => 'mco', 'MD03G1109900' => 'mdo', 'MD03G1134800' => 'mdo', 'MD05G1348000' => 'mdo', 'MD10G1322400' => 'mdo', 'MD11G1123300' => 'mdo', 'MD11G1157600' => 'mdo', 'Medtr2g084875' => 'mtr', 'Medtr2g088130' => 'mtr', 'Medtr4g055310' => 'mtr', 'Medtr4g061070' => 'mtr', 'Medtr4g132250' => 'mtr', 'MELO3C004795.2' => 'cme', 'MELO3C004797.2' => 'cme', 'MELO3C007396.2' => 'cme', 'MELO3C019277.2' => 'cme', 'MELO3C021449.2' => 'cme', 'MELO3C025736.2' => 'cme', 'Migut.D02175' => 'egut', 'Migut.H01573' => 'egut', 'Migut.M01327' => 'egut', 'Migut.N02513' => 'egut', 'MSTRG.14638' => 'ama', 'MSTRG.18632' => 'ama', 'MSTRG.7203' => 'ama', 'Nitab4.5_0000533g0140' => 'nta', 'Nitab4.5_0000888g0150' => 'nta', 'Nitab4.5_0001453g0040' => 'nta', 'Nitab4.5_0002827g0090' => 'nta', 'Nitab4.5_0003082g0040' => 'nta', 'Nitab4.5_0007799g0040' => 'nta', 'Nitab4.5_0008983g0010' => 'nta', 'Nitab4.5_0009017g0020' => 'nta', 'Nn1g02132' => 'nnu', 'Nn1g03492' => 'nnu', 'Nn1g03493' => 'nnu', 'Nn1g03494' => 'nnu', 'Nn1g07164' => 'nnu', 'Nn1g07291' => 'nnu', 'Nn2g10655' => 'nnu', 'Nn2g11652' => 'nnu', 'Nn2g14008' => 'nnu', 'Nn3g17476' => 'nnu', 'Nn3g17477' => 'nnu', 'Nn4g22370' => 'nnu', 'Nn4g25255' => 'nnu', 'Nn5g27755' => 'nnu', 'Nn6g34260' => 'nnu', 'Nn6g35041' => 'nnu', 'Oeu005924.1' => 'oeu', 'Oeu008383.1' => 'oeu', 'Oeu014928.1' => 'oeu', 'Oeu019889.1' => 'oeu', 'Oeu022271.1' => 'oeu', 'Oeu025271.1' => 'oeu', 'Oeu036302.1' => 'oeu', 'Oeu044100.1' => 'oeu', 'Os01g0528300' => 'osa', 'Os03g0286200' => 'osa', 'Os04g0406600' => 'osa', 'Os07g0512000' => 'osa', 'Os07g0694600' => 'osa', 'Os08g0411000' => 'osa', 'Os09g0565700' => 'osa', 'Os09g0566050' => 'osa', 'Os10g0523700' => 'osa', 'Peaxi162Scf00002g00514' => 'pax', 'Peaxi162Scf00047g01817' => 'pax', 'Peaxi162Scf00114g00001' => 'pax', 'Peaxi162Scf00147g00613' => 'pax', 'Peaxi162Scf00389g00425' => 'pax', 'PGR042G1139' => 'pgr', 'PGR042G3273' => 'pgr', 'PGR102G2180' => 'pgr', 'PGR119G0234' => 'pgr', 'PGR119G0668' => 'pgr', 'PGSC0003DMG400007122' => 'stu', 'PGSC0003DMG400016478' => 'stu', 'PGSC0003DMG400025374' => 'stu', 'PGSC0003DMG400026536' => 'stu', 'Phvul.003G079600' => 'pvu', 'Phvul.005G115600' => 'pvu', 'Phvul.005G127100' => 'pvu', 'Phvul.006G149500' => 'pvu', 'Phvul.006G149600' => 'pvu', 'Phvul.011G071800' => 'pvu', 'Phvul.011G090400' => 'pvu', 'Potri.004G013400' => 'ptr', 'Potri.004G188100' => 'ptr', 'Potri.008G195500' => 'ptr', 'Potri.009G148800' => 'ptr', 'Potri.011G004700' => 'ptr', 'Pp3c17_22810' => 'ppa', 'Pp3c18_4480' => 'ppa', 'Pp3c19_13030' => 'ppa', 'Pp3c1_33620' => 'ppa', 'Pp3c2_9380' => 'ppa', 'PRCOL_00001023' => 'pco', 'Prupe.3G216300' => 'ppe', 'Prupe.4G019500' => 'ppe', 'Prupe.6G092500' => 'ppe', 'Prupe.6G119200' => 'ppe', 'Psat0s1945g0080' => 'psa', 'Psat0s4167g0040' => 'psa', 'Psat1g185800' => 'psa', 'Psat4g006440' => 'psa', 'Psat4g006480' => 'psa', 'Psat4g168120' => 'psa', 'Psat5g255680' => 'psa', 'Psat5g261760' => 'psa', 'Psat7g222120' => 'psa', 'PSO063G7252' => 'pso', 'PSO170G4778' => 'pso', 'PSO210G2249' => 'pso', 'PSO339G2411' => 'pso', 'PSO339G2457' => 'pso', 'PSO339G2854' => 'pso', 'PSO339G4288' => 'pso', 'PSO339G4615' => 'pso', 'PSO384G2796' => 'pso', 'PSO384G2940' => 'pso', 'PSO384G4227' => 'pso', 'PSO478G1425' => 'pso', 'PSO541G3863' => 'pso', 'PSO675G0507' => 'pso', 'PSO782G0338' => 'pso', 'PSO832G0644' => 'pso', 'QL01p013664' => 'qlo', 'QL01p036598' => 'qlo', 'QL05p072984' => 'qlo', 'QL08p005768' => 'qlo', 'QL08p032743' => 'qlo', 'QL93p0073_0439' => 'qlo', 'QL93p0073_0444' => 'qlo', 'RcHm_v2.0_Chr5g0002851' => 'rch', 'RcHm_v2.0_Chr5g0055201' => 'rch', 'RcHm_v2.0_Chr5g0061191' => 'rch', 'RcHm_v2.0_Chr7g0203231' => 'rch', 'Rhsim01G0208100' => 'rsi', 'Rhsim01G0208200' => 'rsi', 'Rhsim02G0106500' => 'rsi', 'Rhsim03G0107900' => 'rsi', 'Rhsim06G0163400' => 'rsi', 'Rhsim13G0105200' => 'rsi', 'Sabra04G0006300' => 'sbr', 'Sabra04G0127000' => 'sbr', 'Sabra08G0148700' => 'sbr', 'Sabra09G0117400' => 'sbr', 'SalBow1G3326' => 'sbo', 'SalBow3G3228' => 'sbo', 'SalBow6G1634' => 'sbo', 'SalBow6G3603' => 'sbo', 'SalBow6G5266' => 'sbo', 'SalBow7G2265' => 'sbo', 'SalBow8G0850' => 'sbo', 'SalBow8G2592' => 'sbo', 'Sc05g0009240' => 'sci', 'Sc12g0002300' => 'sci', 'Sc21g0000100' => 'sci', 'Sc21g0004720' => 'sci', 'Sed0002949' => 'sed', 'Sed0004114' => 'sed', 'Sed0004306' => 'sed', 'Sed0006172' => 'sed', 'Sed0008413' => 'sed', 'Sed0013809' => 'sed', 'Sed0019556' => 'sed', 'SEGI_03570' => 'sgi', 'SEGI_07859' => 'sgi', 'SEGI_15042' => 'sgi', 'SEGI_16263' => 'sgi', 'SEGI_16552' => 'sgi', 'SEGI_24331' => 'sgi', 'SEGI_27316' => 'sgi', 'SEGI_29521' => 'sgi', 'SEGI_41342' => 'sgi', 'SGA_v2.0_scaffold27G11617' => 'sas', 'SGA_v2.0_scaffold316G48428' => 'sas', 'SGA_v2.0_scaffold49G18261' => 'sas', 'SGA_v2.0_scaffold7G03831' => 'sas', 'SGA_v2.0_scaffold93G28359' => 'sas', 'SHI02210' => 'shi', 'SHI06028' => 'shi', 'SHI06321' => 'shi', 'SMO111G0012' => 'smo', 'SMO228G0080' => 'smo', 'SMO356G0756' => 'smo', 'Solyc02g080620.3' => 'sly', 'Solyc06g074530.1' => 'sly', 'Solyc11g066890.1' => 'sly', 'Solyc11g072520.3' => 'sly', 'Sopen02g025330' => 'spe', 'Sopen06g031000' => 'spe', 'Sopen09g008240' => 'spe', 'Sopen09g025210' => 'spe', 'Sopen11g026600' => 'spe', 'Sopen11g030170' => 'spe', 'Sp1g10420' => 'spa', 'Sp3g06570' => 'spa', 'Sp4g10660' => 'spa', 'Sp5g16460' => 'spa', 'Sp6g22710' => 'spa', 'TAR365G0112' => 'tar', 'TAR369G0717' => 'tar', 'TAR374G0976' => 'tar', 'TAR623G1128' => 'tar', 'TAR626G1937' => 'tar', 'TAR627G0123' => 'tar', 'TAR628G0305' => 'tar', 'TAR636G1176' => 'tar', 'TAR636G2442' => 'tar', 'THA.LOC104800556' => 'tha', 'THA.LOC104809501' => 'tha', 'THA.LOC104815126' => 'tha', 'THA.LOC104815732' => 'tha', 'THA.LOC104823528' => 'tha', 'Thecc.02G365600' => 'tca', 'Thecc.06G222300' => 'tca', 'Thecc.09G261800' => 'tca', 'Thecc.09G291400' => 'tca', 'Thhalv10003028m.g' => 'esa', 'Thhalv10007886m.g' => 'esa', 'Thhalv10016085m.g' => 'esa', 'Thhalv10016681m.g' => 'esa', 'Thhalv10020951m.g' => 'esa', 'TPR.G15598' => 'tpr', 'TPR.G29305' => 'tpr', 'TPR.G32395' => 'tpr', 'TPR.G36998' => 'tpr', 'TPR.G4227' => 'tpr', 'TWI18G1433' => 'twi', 'TWI31G0755' => 'twi', 'TWI38G0912' => 'twi', 'TWI75G1097' => 'twi', 'TWI75G1619' => 'twi', 'TWI79G1336' => 'twi', 'unitig_0.g943' => 'ugi', 'unitig_0.g944' => 'ugi', 'unitig_22.g6646' => 'ugi', 'unitig_37.g12681' => 'ugi', 'unitig_8.g3290' => 'ugi', 'vmacro03278' => 'vma', 'vmacro12197' => 'vma', 'vmacro14478' => 'vma', 'vmacro15787' => 'vma', 'vmacro15789' => 'vma', 'vmacro15790' => 'vma', 'vmacro15806' => 'vma', 'vmacro22907' => 'vma', 'vmacro22908' => 'vma', 'vmacro22909' => 'vma', 'vmacro23108' => 'vma', 'VMungo0540G0540' => 'vmu', 'VMungo0540G2468' => 'vmu', 'VMungo1080G0390' => 'vmu', 'VMungo1080G1165' => 'vmu', 'VMungo1127G0170' => 'vmu', 'VMungo1127G2099' => 'vmu', 'VMungo1215G3013' => 'vmu', 'Zm00001eb013110' => 'zma', 'Zm00001eb084260' => 'zma', 'Zm00001eb096110' => 'zma', 'Zm00001eb217510' => 'zma', 'Zm00001eb322550' => 'zma', 'Zm00001eb390770' => 'zma', 'Zm00001eb397170' => 'zma', 'Zm00001eb404610' => 'zma', 'Zm00001eb421790' => 'zma' ), 'gf_id' => 'HOM05D000911', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000911' ), 'data_identifier' => 'HOM05D000911', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000911', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27780' => 'bna', 'A03p35380' => 'bna', 'A04p21160' => 'bna', 'A05p40570' => 'bna', 'A06p26900' => 'bna', 'A08p33230' => 'bna', 'A09p65960' => 'bna', 'A10p18290' => 'bna', 'Aa31LG1G12990' => 'aar', 'Aa31LG1G2980' => 'aar', 'Aa31LG4G14320' => 'aar', 'Aa31LG7G11800' => 'aar', 'Aa31sc36G50' => 'aar', 'Aa31sc36G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3721' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5459' => 'aag', 'Actinidia03028' => 'ach', 'Actinidia03753' => 'ach', 'Actinidia04187' => 'ach', 'Actinidia05509' => 'ach', 'Actinidia24180' => 'ach', 'Actinidia26906' => 'ach', 'Actinidia37097' => 'ach', 'Actinidia38249' => 'ach', 'Ah.01g003470' => 'amhyb', 'Ah.01g004580' => 'amhyb', 'Ah.01g014850' => 'amhyb', 'Ah.01g016830' => 'amhyb', 'Ah.14g088000' => 'amhyb', 'AL1G22980' => 'aly', 'AL3G18990' => 'aly', 'AL4G22440' => 'aly', 'AL4G33180' => 'aly', 'AL5G22920' => 'aly', 'AL6G33660' => 'aly', 'AL8G20720' => 'aly', 'Aqoxy1G00935' => 'aox', 'Aqoxy1G02094' => 'aox', 'Aqoxy2G01239' => 'aox', 'Aqoxy4G01870' => 'aox', 'Aqoxy7G00450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.36ZVTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71EM27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5D6C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH3WRE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3NCM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RIM768' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YB5YRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z36GDV' => 'arhy', 'AT1G08250' => 'ath', 'AT1G11790' => 'ath', 'AT2G27820' => 'ath', 'AT3G07630' => 'ath', 'AT3G44720' => 'ath', 'AT5G22630' => 'ath', 'ATR0693G304' => 'atr', 'ATR0794G109' => 'atr', 'ATR0820G120' => 'atr', 'ATR1159G064' => 'atr', 'Atru.chr10.2239' => 'acertr', 'Atru.chr3.3371' => 'acertr', 'Atru.chr6.3202' => 'acertr', 'AUR62006499' => 'cqu', 'AUR62012718' => 'cqu', 'AUR62021938' => 'cqu', 'AUR62023932' => 'cqu', 'AUR62025034' => 'cqu', 'AUR62025035' => 'cqu', 'AUR62038307' => 'cqu', 'AUR62043466' => 'cqu', 'BcaB02g10748' => 'bca', 'BcaB03g13231' => 'bca', 'BcaB03g14689' => 'bca', 'BcaB05g22716' => 'bca', 'BcaB06g28172' => 'bca', 'BcaB08g36413' => 'bca', 'BcaC01g02186' => 'bca', 'BcaC01g04272' => 'bca', 'BcaC02g08080' => 'bca', 'BcaC02g08227' => 'bca', 'BcaC03g13901' => 'bca', 'BcaC04g19593' => 'bca', 'BcaC04g20874' => 'bca', 'BcaC05g29557' => 'bca', 'BcaC06g35505' => 'bca', 'BcaC07g41954' => 'bca', 'BcaC07g41955' => 'bca', 'BcaC07g41956' => 'bca', 'BcaC07g42519' => 'bca', 'BcaC07g42520' => 'bca', 'BcaC07g42523' => 'bca', 'BcaC07g42524' => 'bca', 'BcaC07g42525' => 'bca', 'BcaC08g47480' => 'bca', 'BcaC08g47481' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00530' => 'bna', 'BolC2t07178H' => 'bol', 'BolC3t16567H' => 'bol', 'BolC4t27234H' => 'bol', 'BolC5t29728H' => 'bol', 'BolC5t34622H' => 'bol', 'BolC6t40321H' => 'bol', 'BolC7t42028H' => 'bol', 'BolC8t49125H' => 'bol', 'BolC8t52538H' => 'bol', 'BolC8t52539H' => 'bol', 'BolC9t56681H' => 'bol', 'BolC9t58266H' => 'bol', 'BolSC21t60294H' => 'bol', 'BraA02t05670Z' => 'bra', 'BraA03t12716Z' => 'bra', 'BraA04t17685Z' => 'bra', 'BraA05t22788Z' => 'bra', 'BraA06t24032Z' => 'bra', 'BraA06t25625Z' => 'bra', 'BraA07t27930Z' => 'bra', 'BraA08t35242Z' => 'bra', 'BraA09t38609Z' => 'bra', 'BraA10t43905Z' => 'bra', 'C02p11060' => 'bna', 'C03p42990' => 'bna', 'C03p67310' => 'bna', 'C04p56990' => 'bna', 'C04p58660' => 'bna', 'C05p09890' => 'bna', 'C05p59680' => 'bna', 'C06p19830' => 'bna', 'C06p53040' => 'bna', 'C07p15230' => 'bna', 'C08p50070' => 'bna', 'C08p50090' => 'bna', 'C09p38330' => 'bna', 'C09p53940' => 'bna', 'CAN.G1014.1' => 'can', 'CAN.G644.30' => 'can', 'CAN.G84.47' => 'can', 'CAN.G919.8' => 'can', 'CANSAT54G0113' => 'cansat', 'CANSAT54G1286' => 'cansat', 'CANSAT64G1020' => 'cansat', 'CARHR008080' => 'chi', 'CARHR008090' => 'chi', 'CARHR012130' => 'chi', 'CARHR038390' => 'chi', 'CARHR082330' => 'chi', 'CARHR120520' => 'chi', 'CARHR151470' => 'chi', 'CARHR190950' => 'chi', 'Carub.0001s0760' => 'cru', 'Carub.0001s1146' => 'cru', 'Carub.0003s0721' => 'cru', 'Carub.0004s0858' => 'cru', 'Carub.0005s1040' => 'cru', 'Carub.0006s2035' => 'cru', 'Carub.0015s0005' => 'cru', 'Ca_01607_v3' => 'car', 'Ca_01677_v3' => 'car', 'Ca_06087_v3' => 'car', 'Ca_19238_v3' => 'car', 'Ca_19373_v3' => 'car', 'Ca_21079_v3' => 'car', 'CBR_g54016' => 'cbr', 'CBR_g54018' => 'cbr', 'CBR_g54020' => 'cbr', 'Cc01_g09780' => 'ccan', 'Cc01_g11680' => 'ccan', 'Cc02_g15610' => 'ccan', 'Cc05_g04350' => 'ccan', 'Cc09_g01580' => 'ccan', 'CDE01G0795' => 'cde', 'CDE02G2024' => 'cde', 'CDE02G2260' => 'cde', 'CDE02G4561' => 'cde', 'CDE05G2733' => 'cde', 'CDE05G3422' => 'cde', 'CDE06G2003' => 'cde', 'CDE08G0576' => 'cde', 'CDE09G0048' => 'cde', 'CDE11G0805' => 'cde', 'Cfa003644' => 'cfa', 'Cfa006290' => 'cfa', 'Cfa010080' => 'cfa', 'Cfa011376' => 'cfa', 'Cfa011576' => 'cfa', 'Cfa011577' => 'cfa', 'Cfa014389' => 'cfa', 'Ciclev10006044m.g' => 'ccl', 'Ciclev10006954m.g' => 'ccl', 'Ciclev10015131m.g' => 'ccl', 'Ciclev10015580m.g' => 'ccl', 'Ciclev10028359m.g' => 'ccl', 'Ciclev10028573m.g' => 'ccl', 'CiPaw.03G159300' => 'cil', 'CiPaw.04G115100' => 'cil', 'CiPaw.09G092800' => 'cil', 'CiPaw.10G071800' => 'cil', 'CiPaw.13G105800' => 'cil', 'CiPaw.13G141000' => 'cil', 'CiPaw.14G103400' => 'cil', 'ClCG01G012700' => 'cla', 'ClCG01G012720' => 'cla', 'ClCG01G021920' => 'cla', 'ClCG02G008870' => 'cla', 'ClCG02G020840' => 'cla', 'ClCG02G021930' => 'cla', 'COL.COLO4_19302' => 'col', 'COL.COLO4_25262' => 'col', 'COL.COLO4_31788' => 'col', 'Cpa.g.c34684' => 'cpa', 'Cpa.g.c36520.1' => 'cpa', 'Cpa.g.c45626' => 'cpa', 'Cpa.g.sc121.17' => 'cpa', 'Cpa.g.sc13.22' => 'cpa', 'Cpa.g.sc87.88' => 'cpa', 'Cre06.g261800' => 'cre', 'CsaV3_1G014500' => 'csa', 'CsaV3_1G014510' => 'csa', 'CsaV3_2G034880' => 'csa', 'CsaV3_6G014760' => 'csa', 'CsaV3_6G021500' => 'csa', 'CsaV3_6G048980' => 'csa', 'CSS0002511' => 'camsi', 'CSS0007556' => 'camsi', 'CSS0008532' => 'camsi', 'CSS0009709' => 'camsi', 'CSS0010486' => 'camsi', 'CSS0016768' => 'camsi', 'CSS0023512' => 'camsi', 'CSS0025341' => 'camsi', 'CSS0027999' => 'camsi', 'CSS0028944' => 'camsi', 'CSS0032292' => 'camsi', 'CSS0032464' => 'camsi', 'CSS0037153' => 'camsi', 'CSS0039256' => 'camsi', 'CSS0048392' => 'camsi', 'CSS0050458' => 'camsi', 'DCAR_004224' => 'dca', 'DCAR_006147' => 'dca', 'DCAR_006465' => 'dca', 'DCAR_008159' => 'dca', 'DCAR_012164' => 'dca', 'DCAR_019764' => 'dca', 'Dinv05418' => 'din', 'Dinv10839' => 'din', 'Dinv12521' => 'din', 'Dinv13900' => 'din', 'Dinv29426' => 'din', 'Duzib150G0263' => 'dzi', 'Duzib168G1178' => 'dzi', 'Duzib168G1924' => 'dzi', 'Duzib170G0299' => 'dzi', 'Duzib170G0813' => 'dzi', 'Duzib235G1128' => 'dzi', 'Duzib248G1060' => 'dzi', 'ECA232G1910' => 'eca', 'ECA233G4621' => 'eca', 'ECA238G1216' => 'eca', 'ECA238G1784' => 'eca', 'ECA248G1242' => 'eca', 'EL10Ac8g20071' => 'bvu', 'EL10Ac9g21086' => 'bvu', 'EL10Ac9g22407' => 'bvu', 'EL10Ac9g22412' => 'bvu', 'Eucgr.A01119' => 'egr', 'Eucgr.E04043' => 'egr', 'Eucgr.J00428' => 'egr', 'Eucgr.J00958' => 'egr', 'FAN11G3091' => 'fan', 'FAN11G3651' => 'fan', 'FAN16G2566' => 'fan', 'FAN21G3155' => 'fan', 'FAN21G3400' => 'fan', 'FAN21G3543' => 'fan', 'FAN25G0234' => 'fan', 'FAN25G1422' => 'fan', 'FAN25G3392' => 'fan', 'FvH4_3g01940' => 'fve', 'FvH4_3g29870' => 'fve', 'FvH4_3g33680' => 'fve', 'Glyma.09G004200' => 'gma', 'Glyma.11G151288' => 'gma', 'Glyma.11G189100' => 'gma', 'Glyma.12G072500' => 'gma', 'Glyma.12G085500' => 'gma', 'Glyma.12G181800' => 'gma', 'Glyma.12G193000' => 'gma', 'Glyma.13G309300' => 'gma', 'Glyma.13G319000' => 'gma', 'Glyma.17G012600' => 'gma', 'Gohir.A06G148600' => 'ghi', 'Gohir.A07G115800' => 'ghi', 'Gohir.A08G003600' => 'ghi', 'Gohir.A09G093300' => 'ghi', 'Gohir.A09G105400' => 'ghi', 'Gohir.A09G105500' => 'ghi', 'Gohir.D06G154600' => 'ghi', 'Gohir.D07G120200' => 'ghi', 'Gohir.D08G013900' => 'ghi', 'Gohir.D09G093100' => 'ghi', 'Gohir.D09G102200' => 'ghi', 'Gohir.D09G102300' => 'ghi', 'Gorai.001G129400' => 'gra', 'Gorai.004G008200' => 'gra', 'Gorai.006G109800' => 'gra', 'Gorai.006G119500' => 'gra', 'Gorai.006G121300' => 'gra', 'Gorai.010G180700' => 'gra', 'GSVIVG01012716001' => 'vvi', 'GSVIVG01025118001' => 'vvi', 'GSVIVG01030439001' => 'vvi', 'GSVIVG01031397001' => 'vvi', 'HanXRQChr01g0004201' => 'han', 'HanXRQChr02g0054941' => 'han', 'HanXRQChr05g0141811' => 'han', 'HanXRQChr07g0197751' => 'han', 'HanXRQChr11g0346691' => 'han', 'HanXRQChr13g0396971' => 'han', 'HanXRQChr14g0432951' => 'han', 'HanXRQChr14g0452001' => 'han', 'HanXRQChr15g0496681' => 'han', 'HanXRQChr17g0557491' => 'han', 'HanXRQChr17g0557501' => 'han', 'Haze_06809' => 'cav', 'Haze_12852' => 'cav', 'Haze_15850' => 'cav', 'Haze_23446' => 'cav', 'Haze_23942' => 'cav', 'Haze_23943' => 'cav', 'Hma1.2p1_0091F.1_g046450' => 'hma', 'Hma1.2p1_0128F.1_g059910' => 'hma', 'Hma1.2p1_0249F.1_g102260' => 'hma', 'Hma1.2p1_0453F.1_g156190' => 'hma', 'Hma1.2p1_0695F.1_g204380' => 'hma', 'Hma1.2p1_0749F.1_g212650' => 'hma', 'Hma1.2p1_2156F.1_g315420' => 'hma', 'Hma1.2p1_2686F.1_g326940' => 'hma', 'HPP92_006428' => 'vpl', 'HPP92_012069' => 'vpl', 'HPP92_014129' => 'vpl', 'HPP92_014133' => 'vpl', 'HPP92_017315' => 'vpl', 'HPP92_026445' => 'vpl', 'HPP92_026446' => 'vpl', 'Hund00774' => 'sun', 'Hund07682' => 'sun', 'Hund21413' => 'sun', 'Hund23462' => 'sun', 'Hund23463' => 'sun', 'Lalb_Chr03g0027911' => 'lal', 'Lalb_Chr13g0304271' => 'lal', 'Lalb_Chr19g0137471' => 'lal', 'Lalb_Chr22g0350651' => 'lal', 'Lalb_Chr24g0395151' => 'lal', 'Lj1A1231T40' => 'lonja', 'Lj1A221T48' => 'lonja', 'Lj1C924T12' => 'lonja', 'Lj2C993G6' => 'lonja', 'Lj3g0005790' => 'lja', 'Lj3g0015432' => 'lja', 'Lj3g0017722' => 'lja', 'Lj3g0018497' => 'lja', 'Lj4g0025071' => 'lja', 'Lsat_1_v5_gn_1_129680' => 'lsa', 'Lsat_1_v5_gn_2_25321' => 'lsa', 'Lsat_1_v5_gn_2_95461' => 'lsa', 'Lsat_1_v5_gn_4_159620' => 'lsa', 'Lsat_1_v5_gn_6_41301' => 'lsa', 'Lsat_1_v5_gn_6_74660' => 'lsa', 'Lsat_1_v5_gn_7_11520' => 'lsa', 'Lsat_1_v5_gn_9_67680' => 'lsa', 'Manes.04G008300' => 'mes', 'Manes.04G008400' => 'mes', 'Manes.04G026500' => 'mes', 'Manes.10G135300' => 'mes', 'Manes.11G157300' => 'mes', 'Manes.12G074000' => 'mes', 'Manes.16G006200' => 'mes', 'Manes.17G026400' => 'mes', 'Mapoly0024s0086' => 'mpo', 'Mapoly0024s0087' => 'mpo', 'Mapoly0071s0057' => 'mpo', 'Mapoly0204s0012' => 'mpo', 'MBI04_g37681_MAGBIO' => 'mbi', 'MBI05_g17779_MAGBIO' => 'mbi', 'MBI12_g31184_MAGBIO' => 'mbi', 'MBI17_g11083_MAGBIO' => 'mbi', 'MBI18_g03883_MAGBIO' => 'mbi', 'MBI18_g28940_MAGBIO' => 'mbi', 'MCO01G690' => 'mco', 'MD03G1109900' => 'mdo', 'MD03G1134800' => 'mdo', 'MD05G1348000' => 'mdo', 'MD10G1322400' => 'mdo', 'MD11G1123300' => 'mdo', 'MD11G1157600' => 'mdo', 'Medtr2g084875' => 'mtr', 'Medtr2g088130' => 'mtr', 'Medtr4g055310' => 'mtr', 'Medtr4g061070' => 'mtr', 'Medtr4g132250' => 'mtr', 'MELO3C004795.2' => 'cme', 'MELO3C004797.2' => 'cme', 'MELO3C007396.2' => 'cme', 'MELO3C019277.2' => 'cme', 'MELO3C021449.2' => 'cme', 'MELO3C025736.2' => 'cme', 'Migut.D02175' => 'egut', 'Migut.H01573' => 'egut', 'Migut.M01327' => 'egut', 'Migut.N02513' => 'egut', 'MSTRG.14638' => 'ama', 'MSTRG.18632' => 'ama', 'MSTRG.7203' => 'ama', 'Nitab4.5_0000533g0140' => 'nta', 'Nitab4.5_0000888g0150' => 'nta', 'Nitab4.5_0001453g0040' => 'nta', 'Nitab4.5_0002827g0090' => 'nta', 'Nitab4.5_0003082g0040' => 'nta', 'Nitab4.5_0007799g0040' => 'nta', 'Nitab4.5_0008983g0010' => 'nta', 'Nitab4.5_0009017g0020' => 'nta', 'Nn1g02132' => 'nnu', 'Nn1g03492' => 'nnu', 'Nn1g03493' => 'nnu', 'Nn1g03494' => 'nnu', 'Nn1g07164' => 'nnu', 'Nn1g07291' => 'nnu', 'Nn2g10655' => 'nnu', 'Nn2g11652' => 'nnu', 'Nn2g14008' => 'nnu', 'Nn3g17476' => 'nnu', 'Nn3g17477' => 'nnu', 'Nn4g22370' => 'nnu', 'Nn4g25255' => 'nnu', 'Nn5g27755' => 'nnu', 'Nn6g34260' => 'nnu', 'Nn6g35041' => 'nnu', 'Oeu005924.1' => 'oeu', 'Oeu008383.1' => 'oeu', 'Oeu014928.1' => 'oeu', 'Oeu019889.1' => 'oeu', 'Oeu022271.1' => 'oeu', 'Oeu025271.1' => 'oeu', 'Oeu036302.1' => 'oeu', 'Oeu044100.1' => 'oeu', 'Os01g0528300' => 'osa', 'Os03g0286200' => 'osa', 'Os04g0406600' => 'osa', 'Os07g0512000' => 'osa', 'Os07g0694600' => 'osa', 'Os08g0411000' => 'osa', 'Os09g0565700' => 'osa', 'Os09g0566050' => 'osa', 'Os10g0523700' => 'osa', 'Peaxi162Scf00002g00514' => 'pax', 'Peaxi162Scf00047g01817' => 'pax', 'Peaxi162Scf00114g00001' => 'pax', 'Peaxi162Scf00147g00613' => 'pax', 'Peaxi162Scf00389g00425' => 'pax', 'PGR042G1139' => 'pgr', 'PGR042G3273' => 'pgr', 'PGR102G2180' => 'pgr', 'PGR119G0234' => 'pgr', 'PGR119G0668' => 'pgr', 'PGSC0003DMG400007122' => 'stu', 'PGSC0003DMG400016478' => 'stu', 'PGSC0003DMG400025374' => 'stu', 'PGSC0003DMG400026536' => 'stu', 'Phvul.003G079600' => 'pvu', 'Phvul.005G115600' => 'pvu', 'Phvul.005G127100' => 'pvu', 'Phvul.006G149500' => 'pvu', 'Phvul.006G149600' => 'pvu', 'Phvul.011G071800' => 'pvu', 'Phvul.011G090400' => 'pvu', 'Potri.004G013400' => 'ptr', 'Potri.004G188100' => 'ptr', 'Potri.008G195500' => 'ptr', 'Potri.009G148800' => 'ptr', 'Potri.011G004700' => 'ptr', 'Pp3c17_22810' => 'ppa', 'Pp3c18_4480' => 'ppa', 'Pp3c19_13030' => 'ppa', 'Pp3c1_33620' => 'ppa', 'Pp3c2_9380' => 'ppa', 'PRCOL_00001023' => 'pco', 'Prupe.3G216300' => 'ppe', 'Prupe.4G019500' => 'ppe', 'Prupe.6G092500' => 'ppe', 'Prupe.6G119200' => 'ppe', 'Psat0s1945g0080' => 'psa', 'Psat0s4167g0040' => 'psa', 'Psat1g185800' => 'psa', 'Psat4g006440' => 'psa', 'Psat4g006480' => 'psa', 'Psat4g168120' => 'psa', 'Psat5g255680' => 'psa', 'Psat5g261760' => 'psa', 'Psat7g222120' => 'psa', 'PSO063G7252' => 'pso', 'PSO170G4778' => 'pso', 'PSO210G2249' => 'pso', 'PSO339G2411' => 'pso', 'PSO339G2457' => 'pso', 'PSO339G2854' => 'pso', 'PSO339G4288' => 'pso', 'PSO339G4615' => 'pso', 'PSO384G2796' => 'pso', 'PSO384G2940' => 'pso', 'PSO384G4227' => 'pso', 'PSO478G1425' => 'pso', 'PSO541G3863' => 'pso', 'PSO675G0507' => 'pso', 'PSO782G0338' => 'pso', 'PSO832G0644' => 'pso', 'QL01p013664' => 'qlo', 'QL01p036598' => 'qlo', 'QL05p072984' => 'qlo', 'QL08p005768' => 'qlo', 'QL08p032743' => 'qlo', 'QL93p0073_0439' => 'qlo', 'QL93p0073_0444' => 'qlo', 'RcHm_v2.0_Chr5g0002851' => 'rch', 'RcHm_v2.0_Chr5g0055201' => 'rch', 'RcHm_v2.0_Chr5g0061191' => 'rch', 'RcHm_v2.0_Chr7g0203231' => 'rch', 'Rhsim01G0208100' => 'rsi', 'Rhsim01G0208200' => 'rsi', 'Rhsim02G0106500' => 'rsi', 'Rhsim03G0107900' => 'rsi', 'Rhsim06G0163400' => 'rsi', 'Rhsim13G0105200' => 'rsi', 'Sabra04G0006300' => 'sbr', 'Sabra04G0127000' => 'sbr', 'Sabra08G0148700' => 'sbr', 'Sabra09G0117400' => 'sbr', 'SalBow1G3326' => 'sbo', 'SalBow3G3228' => 'sbo', 'SalBow6G1634' => 'sbo', 'SalBow6G3603' => 'sbo', 'SalBow6G5266' => 'sbo', 'SalBow7G2265' => 'sbo', 'SalBow8G0850' => 'sbo', 'SalBow8G2592' => 'sbo', 'Sc05g0009240' => 'sci', 'Sc12g0002300' => 'sci', 'Sc21g0000100' => 'sci', 'Sc21g0004720' => 'sci', 'Sed0002949' => 'sed', 'Sed0004114' => 'sed', 'Sed0004306' => 'sed', 'Sed0006172' => 'sed', 'Sed0008413' => 'sed', 'Sed0013809' => 'sed', 'Sed0019556' => 'sed', 'SEGI_03570' => 'sgi', 'SEGI_07859' => 'sgi', 'SEGI_15042' => 'sgi', 'SEGI_16263' => 'sgi', 'SEGI_16552' => 'sgi', 'SEGI_24331' => 'sgi', 'SEGI_27316' => 'sgi', 'SEGI_29521' => 'sgi', 'SEGI_41342' => 'sgi', 'SGA_v2.0_scaffold27G11617' => 'sas', 'SGA_v2.0_scaffold316G48428' => 'sas', 'SGA_v2.0_scaffold49G18261' => 'sas', 'SGA_v2.0_scaffold7G03831' => 'sas', 'SGA_v2.0_scaffold93G28359' => 'sas', 'SHI02210' => 'shi', 'SHI06028' => 'shi', 'SHI06321' => 'shi', 'SMO111G0012' => 'smo', 'SMO228G0080' => 'smo', 'SMO356G0756' => 'smo', 'Solyc02g080620.3' => 'sly', 'Solyc06g074530.1' => 'sly', 'Solyc11g066890.1' => 'sly', 'Solyc11g072520.3' => 'sly', 'Sopen02g025330' => 'spe', 'Sopen06g031000' => 'spe', 'Sopen09g008240' => 'spe', 'Sopen09g025210' => 'spe', 'Sopen11g026600' => 'spe', 'Sopen11g030170' => 'spe', 'Sp1g10420' => 'spa', 'Sp3g06570' => 'spa', 'Sp4g10660' => 'spa', 'Sp5g16460' => 'spa', 'Sp6g22710' => 'spa', 'TAR365G0112' => 'tar', 'TAR369G0717' => 'tar', 'TAR374G0976' => 'tar', 'TAR623G1128' => 'tar', 'TAR626G1937' => 'tar', 'TAR627G0123' => 'tar', 'TAR628G0305' => 'tar', 'TAR636G1176' => 'tar', 'TAR636G2442' => 'tar', 'THA.LOC104800556' => 'tha', 'THA.LOC104809501' => 'tha', 'THA.LOC104815126' => 'tha', 'THA.LOC104815732' => 'tha', 'THA.LOC104823528' => 'tha', 'Thecc.02G365600' => 'tca', 'Thecc.06G222300' => 'tca', 'Thecc.09G261800' => 'tca', 'Thecc.09G291400' => 'tca', 'Thhalv10003028m.g' => 'esa', 'Thhalv10007886m.g' => 'esa', 'Thhalv10016085m.g' => 'esa', 'Thhalv10016681m.g' => 'esa', 'Thhalv10020951m.g' => 'esa', 'TPR.G15598' => 'tpr', 'TPR.G29305' => 'tpr', 'TPR.G32395' => 'tpr', 'TPR.G36998' => 'tpr', 'TPR.G4227' => 'tpr', 'TWI18G1433' => 'twi', 'TWI31G0755' => 'twi', 'TWI38G0912' => 'twi', 'TWI75G1097' => 'twi', 'TWI75G1619' => 'twi', 'TWI79G1336' => 'twi', 'unitig_0.g943' => 'ugi', 'unitig_0.g944' => 'ugi', 'unitig_22.g6646' => 'ugi', 'unitig_37.g12681' => 'ugi', 'unitig_8.g3290' => 'ugi', 'vmacro03278' => 'vma', 'vmacro12197' => 'vma', 'vmacro14478' => 'vma', 'vmacro15787' => 'vma', 'vmacro15789' => 'vma', 'vmacro15790' => 'vma', 'vmacro15806' => 'vma', 'vmacro22907' => 'vma', 'vmacro22908' => 'vma', 'vmacro22909' => 'vma', 'vmacro23108' => 'vma', 'VMungo0540G0540' => 'vmu', 'VMungo0540G2468' => 'vmu', 'VMungo1080G0390' => 'vmu', 'VMungo1080G1165' => 'vmu', 'VMungo1127G0170' => 'vmu', 'VMungo1127G2099' => 'vmu', 'VMungo1215G3013' => 'vmu', 'Zm00001eb013110' => 'zma', 'Zm00001eb084260' => 'zma', 'Zm00001eb096110' => 'zma', 'Zm00001eb217510' => 'zma', 'Zm00001eb322550' => 'zma', 'Zm00001eb390770' => 'zma', 'Zm00001eb397170' => 'zma', 'Zm00001eb404610' => 'zma', 'Zm00001eb421790' => 'zma' ) $gf_id = 'HOM05D000911' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000911' ) $data_identifier = 'HOM05D000911' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 16, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 5, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 6, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 8, 'nnu' => (int) 16, 'oeu' => (int) 8, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 5, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 16, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421790' $species_info = array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ) $local_species = 'cbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000911', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27780' => 'bna', 'A03p35380' => 'bna', 'A04p21160' => 'bna', 'A05p40570' => 'bna', 'A06p26900' => 'bna', 'A08p33230' => 'bna', 'A09p65960' => 'bna', 'A10p18290' => 'bna', 'Aa31LG1G12990' => 'aar', 'Aa31LG1G2980' => 'aar', 'Aa31LG4G14320' => 'aar', 'Aa31LG7G11800' => 'aar', 'Aa31sc36G50' => 'aar', 'Aa31sc36G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3721' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5459' => 'aag', 'Actinidia03028' => 'ach', 'Actinidia03753' => 'ach', 'Actinidia04187' => 'ach', 'Actinidia05509' => 'ach', 'Actinidia24180' => 'ach', 'Actinidia26906' => 'ach', 'Actinidia37097' => 'ach', 'Actinidia38249' => 'ach', 'Ah.01g003470' => 'amhyb', 'Ah.01g004580' => 'amhyb', 'Ah.01g014850' => 'amhyb', 'Ah.01g016830' => 'amhyb', 'Ah.14g088000' => 'amhyb', 'AL1G22980' => 'aly', 'AL3G18990' => 'aly', 'AL4G22440' => 'aly', 'AL4G33180' => 'aly', 'AL5G22920' => 'aly', 'AL6G33660' => 'aly', 'AL8G20720' => 'aly', 'Aqoxy1G00935' => 'aox', 'Aqoxy1G02094' => 'aox', 'Aqoxy2G01239' => 'aox', 'Aqoxy4G01870' => 'aox', 'Aqoxy7G00450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.36ZVTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71EM27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5D6C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH3WRE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3NCM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RIM768' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YB5YRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z36GDV' => 'arhy', 'AT1G08250' => 'ath', 'AT1G11790' => 'ath', 'AT2G27820' => 'ath', 'AT3G07630' => 'ath', 'AT3G44720' => 'ath', 'AT5G22630' => 'ath', 'ATR0693G304' => 'atr', 'ATR0794G109' => 'atr', 'ATR0820G120' => 'atr', 'ATR1159G064' => 'atr', 'Atru.chr10.2239' => 'acertr', 'Atru.chr3.3371' => 'acertr', 'Atru.chr6.3202' => 'acertr', 'AUR62006499' => 'cqu', 'AUR62012718' => 'cqu', 'AUR62021938' => 'cqu', 'AUR62023932' => 'cqu', 'AUR62025034' => 'cqu', 'AUR62025035' => 'cqu', 'AUR62038307' => 'cqu', 'AUR62043466' => 'cqu', 'BcaB02g10748' => 'bca', 'BcaB03g13231' => 'bca', 'BcaB03g14689' => 'bca', 'BcaB05g22716' => 'bca', 'BcaB06g28172' => 'bca', 'BcaB08g36413' => 'bca', 'BcaC01g02186' => 'bca', 'BcaC01g04272' => 'bca', 'BcaC02g08080' => 'bca', 'BcaC02g08227' => 'bca', 'BcaC03g13901' => 'bca', 'BcaC04g19593' => 'bca', 'BcaC04g20874' => 'bca', 'BcaC05g29557' => 'bca', 'BcaC06g35505' => 'bca', 'BcaC07g41954' => 'bca', 'BcaC07g41955' => 'bca', 'BcaC07g41956' => 'bca', 'BcaC07g42519' => 'bca', 'BcaC07g42520' => 'bca', 'BcaC07g42523' => 'bca', 'BcaC07g42524' => 'bca', 'BcaC07g42525' => 'bca', 'BcaC08g47480' => 'bca', 'BcaC08g47481' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00530' => 'bna', 'BolC2t07178H' => 'bol', 'BolC3t16567H' => 'bol', 'BolC4t27234H' => 'bol', 'BolC5t29728H' => 'bol', 'BolC5t34622H' => 'bol', 'BolC6t40321H' => 'bol', 'BolC7t42028H' => 'bol', 'BolC8t49125H' => 'bol', 'BolC8t52538H' => 'bol', 'BolC8t52539H' => 'bol', 'BolC9t56681H' => 'bol', 'BolC9t58266H' => 'bol', 'BolSC21t60294H' => 'bol', 'BraA02t05670Z' => 'bra', 'BraA03t12716Z' => 'bra', 'BraA04t17685Z' => 'bra', 'BraA05t22788Z' => 'bra', 'BraA06t24032Z' => 'bra', 'BraA06t25625Z' => 'bra', 'BraA07t27930Z' => 'bra', 'BraA08t35242Z' => 'bra', 'BraA09t38609Z' => 'bra', 'BraA10t43905Z' => 'bra', 'C02p11060' => 'bna', 'C03p42990' => 'bna', 'C03p67310' => 'bna', 'C04p56990' => 'bna', 'C04p58660' => 'bna', 'C05p09890' => 'bna', 'C05p59680' => 'bna', 'C06p19830' => 'bna', 'C06p53040' => 'bna', 'C07p15230' => 'bna', 'C08p50070' => 'bna', 'C08p50090' => 'bna', 'C09p38330' => 'bna', 'C09p53940' => 'bna', 'CAN.G1014.1' => 'can', 'CAN.G644.30' => 'can', 'CAN.G84.47' => 'can', 'CAN.G919.8' => 'can', 'CANSAT54G0113' => 'cansat', 'CANSAT54G1286' => 'cansat', 'CANSAT64G1020' => 'cansat', 'CARHR008080' => 'chi', 'CARHR008090' => 'chi', 'CARHR012130' => 'chi', 'CARHR038390' => 'chi', 'CARHR082330' => 'chi', 'CARHR120520' => 'chi', 'CARHR151470' => 'chi', 'CARHR190950' => 'chi', 'Carub.0001s0760' => 'cru', 'Carub.0001s1146' => 'cru', 'Carub.0003s0721' => 'cru', 'Carub.0004s0858' => 'cru', 'Carub.0005s1040' => 'cru', 'Carub.0006s2035' => 'cru', 'Carub.0015s0005' => 'cru', 'Ca_01607_v3' => 'car', 'Ca_01677_v3' => 'car', 'Ca_06087_v3' => 'car', 'Ca_19238_v3' => 'car', 'Ca_19373_v3' => 'car', 'Ca_21079_v3' => 'car', 'CBR_g54016' => 'cbr', 'CBR_g54018' => 'cbr', 'CBR_g54020' => 'cbr', 'Cc01_g09780' => 'ccan', 'Cc01_g11680' => 'ccan', 'Cc02_g15610' => 'ccan', 'Cc05_g04350' => 'ccan', 'Cc09_g01580' => 'ccan', 'CDE01G0795' => 'cde', 'CDE02G2024' => 'cde', 'CDE02G2260' => 'cde', 'CDE02G4561' => 'cde', 'CDE05G2733' => 'cde', 'CDE05G3422' => 'cde', 'CDE06G2003' => 'cde', 'CDE08G0576' => 'cde', 'CDE09G0048' => 'cde', 'CDE11G0805' => 'cde', 'Cfa003644' => 'cfa', 'Cfa006290' => 'cfa', 'Cfa010080' => 'cfa', 'Cfa011376' => 'cfa', 'Cfa011576' => 'cfa', 'Cfa011577' => 'cfa', 'Cfa014389' => 'cfa', 'Ciclev10006044m.g' => 'ccl', 'Ciclev10006954m.g' => 'ccl', 'Ciclev10015131m.g' => 'ccl', 'Ciclev10015580m.g' => 'ccl', 'Ciclev10028359m.g' => 'ccl', 'Ciclev10028573m.g' => 'ccl', 'CiPaw.03G159300' => 'cil', 'CiPaw.04G115100' => 'cil', 'CiPaw.09G092800' => 'cil', 'CiPaw.10G071800' => 'cil', 'CiPaw.13G105800' => 'cil', 'CiPaw.13G141000' => 'cil', 'CiPaw.14G103400' => 'cil', 'ClCG01G012700' => 'cla', 'ClCG01G012720' => 'cla', 'ClCG01G021920' => 'cla', 'ClCG02G008870' => 'cla', 'ClCG02G020840' => 'cla', 'ClCG02G021930' => 'cla', 'COL.COLO4_19302' => 'col', 'COL.COLO4_25262' => 'col', 'COL.COLO4_31788' => 'col', 'Cpa.g.c34684' => 'cpa', 'Cpa.g.c36520.1' => 'cpa', 'Cpa.g.c45626' => 'cpa', 'Cpa.g.sc121.17' => 'cpa', 'Cpa.g.sc13.22' => 'cpa', 'Cpa.g.sc87.88' => 'cpa', 'Cre06.g261800' => 'cre', 'CsaV3_1G014500' => 'csa', 'CsaV3_1G014510' => 'csa', 'CsaV3_2G034880' => 'csa', 'CsaV3_6G014760' => 'csa', 'CsaV3_6G021500' => 'csa', 'CsaV3_6G048980' => 'csa', 'CSS0002511' => 'camsi', 'CSS0007556' => 'camsi', 'CSS0008532' => 'camsi', 'CSS0009709' => 'camsi', 'CSS0010486' => 'camsi', 'CSS0016768' => 'camsi', 'CSS0023512' => 'camsi', 'CSS0025341' => 'camsi', 'CSS0027999' => 'camsi', 'CSS0028944' => 'camsi', 'CSS0032292' => 'camsi', 'CSS0032464' => 'camsi', 'CSS0037153' => 'camsi', 'CSS0039256' => 'camsi', 'CSS0048392' => 'camsi', 'CSS0050458' => 'camsi', 'DCAR_004224' => 'dca', 'DCAR_006147' => 'dca', 'DCAR_006465' => 'dca', 'DCAR_008159' => 'dca', 'DCAR_012164' => 'dca', 'DCAR_019764' => 'dca', 'Dinv05418' => 'din', 'Dinv10839' => 'din', 'Dinv12521' => 'din', 'Dinv13900' => 'din', 'Dinv29426' => 'din', 'Duzib150G0263' => 'dzi', 'Duzib168G1178' => 'dzi', 'Duzib168G1924' => 'dzi', 'Duzib170G0299' => 'dzi', 'Duzib170G0813' => 'dzi', 'Duzib235G1128' => 'dzi', 'Duzib248G1060' => 'dzi', 'ECA232G1910' => 'eca', 'ECA233G4621' => 'eca', 'ECA238G1216' => 'eca', 'ECA238G1784' => 'eca', 'ECA248G1242' => 'eca', 'EL10Ac8g20071' => 'bvu', 'EL10Ac9g21086' => 'bvu', 'EL10Ac9g22407' => 'bvu', 'EL10Ac9g22412' => 'bvu', 'Eucgr.A01119' => 'egr', 'Eucgr.E04043' => 'egr', 'Eucgr.J00428' => 'egr', 'Eucgr.J00958' => 'egr', 'FAN11G3091' => 'fan', 'FAN11G3651' => 'fan', 'FAN16G2566' => 'fan', 'FAN21G3155' => 'fan', 'FAN21G3400' => 'fan', 'FAN21G3543' => 'fan', 'FAN25G0234' => 'fan', 'FAN25G1422' => 'fan', 'FAN25G3392' => 'fan', 'FvH4_3g01940' => 'fve', 'FvH4_3g29870' => 'fve', 'FvH4_3g33680' => 'fve', 'Glyma.09G004200' => 'gma', 'Glyma.11G151288' => 'gma', 'Glyma.11G189100' => 'gma', 'Glyma.12G072500' => 'gma', 'Glyma.12G085500' => 'gma', 'Glyma.12G181800' => 'gma', 'Glyma.12G193000' => 'gma', 'Glyma.13G309300' => 'gma', 'Glyma.13G319000' => 'gma', 'Glyma.17G012600' => 'gma', 'Gohir.A06G148600' => 'ghi', 'Gohir.A07G115800' => 'ghi', 'Gohir.A08G003600' => 'ghi', 'Gohir.A09G093300' => 'ghi', 'Gohir.A09G105400' => 'ghi', 'Gohir.A09G105500' => 'ghi', 'Gohir.D06G154600' => 'ghi', 'Gohir.D07G120200' => 'ghi', 'Gohir.D08G013900' => 'ghi', 'Gohir.D09G093100' => 'ghi', 'Gohir.D09G102200' => 'ghi', 'Gohir.D09G102300' => 'ghi', 'Gorai.001G129400' => 'gra', 'Gorai.004G008200' => 'gra', 'Gorai.006G109800' => 'gra', 'Gorai.006G119500' => 'gra', 'Gorai.006G121300' => 'gra', 'Gorai.010G180700' => 'gra', 'GSVIVG01012716001' => 'vvi', 'GSVIVG01025118001' => 'vvi', 'GSVIVG01030439001' => 'vvi', 'GSVIVG01031397001' => 'vvi', 'HanXRQChr01g0004201' => 'han', 'HanXRQChr02g0054941' => 'han', 'HanXRQChr05g0141811' => 'han', 'HanXRQChr07g0197751' => 'han', 'HanXRQChr11g0346691' => 'han', 'HanXRQChr13g0396971' => 'han', 'HanXRQChr14g0432951' => 'han', 'HanXRQChr14g0452001' => 'han', 'HanXRQChr15g0496681' => 'han', 'HanXRQChr17g0557491' => 'han', 'HanXRQChr17g0557501' => 'han', 'Haze_06809' => 'cav', 'Haze_12852' => 'cav', 'Haze_15850' => 'cav', 'Haze_23446' => 'cav', 'Haze_23942' => 'cav', 'Haze_23943' => 'cav', 'Hma1.2p1_0091F.1_g046450' => 'hma', 'Hma1.2p1_0128F.1_g059910' => 'hma', 'Hma1.2p1_0249F.1_g102260' => 'hma', 'Hma1.2p1_0453F.1_g156190' => 'hma', 'Hma1.2p1_0695F.1_g204380' => 'hma', 'Hma1.2p1_0749F.1_g212650' => 'hma', 'Hma1.2p1_2156F.1_g315420' => 'hma', 'Hma1.2p1_2686F.1_g326940' => 'hma', 'HPP92_006428' => 'vpl', 'HPP92_012069' => 'vpl', 'HPP92_014129' => 'vpl', 'HPP92_014133' => 'vpl', 'HPP92_017315' => 'vpl', 'HPP92_026445' => 'vpl', 'HPP92_026446' => 'vpl', 'Hund00774' => 'sun', 'Hund07682' => 'sun', 'Hund21413' => 'sun', 'Hund23462' => 'sun', 'Hund23463' => 'sun', 'Lalb_Chr03g0027911' => 'lal', 'Lalb_Chr13g0304271' => 'lal', 'Lalb_Chr19g0137471' => 'lal', 'Lalb_Chr22g0350651' => 'lal', 'Lalb_Chr24g0395151' => 'lal', 'Lj1A1231T40' => 'lonja', 'Lj1A221T48' => 'lonja', 'Lj1C924T12' => 'lonja', 'Lj2C993G6' => 'lonja', 'Lj3g0005790' => 'lja', 'Lj3g0015432' => 'lja', 'Lj3g0017722' => 'lja', 'Lj3g0018497' => 'lja', 'Lj4g0025071' => 'lja', 'Lsat_1_v5_gn_1_129680' => 'lsa', 'Lsat_1_v5_gn_2_25321' => 'lsa', 'Lsat_1_v5_gn_2_95461' => 'lsa', 'Lsat_1_v5_gn_4_159620' => 'lsa', 'Lsat_1_v5_gn_6_41301' => 'lsa', 'Lsat_1_v5_gn_6_74660' => 'lsa', 'Lsat_1_v5_gn_7_11520' => 'lsa', 'Lsat_1_v5_gn_9_67680' => 'lsa', 'Manes.04G008300' => 'mes', 'Manes.04G008400' => 'mes', 'Manes.04G026500' => 'mes', 'Manes.10G135300' => 'mes', 'Manes.11G157300' => 'mes', 'Manes.12G074000' => 'mes', 'Manes.16G006200' => 'mes', 'Manes.17G026400' => 'mes', 'Mapoly0024s0086' => 'mpo', 'Mapoly0024s0087' => 'mpo', 'Mapoly0071s0057' => 'mpo', 'Mapoly0204s0012' => 'mpo', 'MBI04_g37681_MAGBIO' => 'mbi', 'MBI05_g17779_MAGBIO' => 'mbi', 'MBI12_g31184_MAGBIO' => 'mbi', 'MBI17_g11083_MAGBIO' => 'mbi', 'MBI18_g03883_MAGBIO' => 'mbi', 'MBI18_g28940_MAGBIO' => 'mbi', 'MCO01G690' => 'mco', 'MD03G1109900' => 'mdo', 'MD03G1134800' => 'mdo', 'MD05G1348000' => 'mdo', 'MD10G1322400' => 'mdo', 'MD11G1123300' => 'mdo', 'MD11G1157600' => 'mdo', 'Medtr2g084875' => 'mtr', 'Medtr2g088130' => 'mtr', 'Medtr4g055310' => 'mtr', 'Medtr4g061070' => 'mtr', 'Medtr4g132250' => 'mtr', 'MELO3C004795.2' => 'cme', 'MELO3C004797.2' => 'cme', 'MELO3C007396.2' => 'cme', 'MELO3C019277.2' => 'cme', 'MELO3C021449.2' => 'cme', 'MELO3C025736.2' => 'cme', 'Migut.D02175' => 'egut', 'Migut.H01573' => 'egut', 'Migut.M01327' => 'egut', 'Migut.N02513' => 'egut', 'MSTRG.14638' => 'ama', 'MSTRG.18632' => 'ama', 'MSTRG.7203' => 'ama', 'Nitab4.5_0000533g0140' => 'nta', 'Nitab4.5_0000888g0150' => 'nta', 'Nitab4.5_0001453g0040' => 'nta', 'Nitab4.5_0002827g0090' => 'nta', 'Nitab4.5_0003082g0040' => 'nta', 'Nitab4.5_0007799g0040' => 'nta', 'Nitab4.5_0008983g0010' => 'nta', 'Nitab4.5_0009017g0020' => 'nta', 'Nn1g02132' => 'nnu', 'Nn1g03492' => 'nnu', 'Nn1g03493' => 'nnu', 'Nn1g03494' => 'nnu', 'Nn1g07164' => 'nnu', 'Nn1g07291' => 'nnu', 'Nn2g10655' => 'nnu', 'Nn2g11652' => 'nnu', 'Nn2g14008' => 'nnu', 'Nn3g17476' => 'nnu', 'Nn3g17477' => 'nnu', 'Nn4g22370' => 'nnu', 'Nn4g25255' => 'nnu', 'Nn5g27755' => 'nnu', 'Nn6g34260' => 'nnu', 'Nn6g35041' => 'nnu', 'Oeu005924.1' => 'oeu', 'Oeu008383.1' => 'oeu', 'Oeu014928.1' => 'oeu', 'Oeu019889.1' => 'oeu', 'Oeu022271.1' => 'oeu', 'Oeu025271.1' => 'oeu', 'Oeu036302.1' => 'oeu', 'Oeu044100.1' => 'oeu', 'Os01g0528300' => 'osa', 'Os03g0286200' => 'osa', 'Os04g0406600' => 'osa', 'Os07g0512000' => 'osa', 'Os07g0694600' => 'osa', 'Os08g0411000' => 'osa', 'Os09g0565700' => 'osa', 'Os09g0566050' => 'osa', 'Os10g0523700' => 'osa', 'Peaxi162Scf00002g00514' => 'pax', 'Peaxi162Scf00047g01817' => 'pax', 'Peaxi162Scf00114g00001' => 'pax', 'Peaxi162Scf00147g00613' => 'pax', 'Peaxi162Scf00389g00425' => 'pax', 'PGR042G1139' => 'pgr', 'PGR042G3273' => 'pgr', 'PGR102G2180' => 'pgr', 'PGR119G0234' => 'pgr', 'PGR119G0668' => 'pgr', 'PGSC0003DMG400007122' => 'stu', 'PGSC0003DMG400016478' => 'stu', 'PGSC0003DMG400025374' => 'stu', 'PGSC0003DMG400026536' => 'stu', 'Phvul.003G079600' => 'pvu', 'Phvul.005G115600' => 'pvu', 'Phvul.005G127100' => 'pvu', 'Phvul.006G149500' => 'pvu', 'Phvul.006G149600' => 'pvu', 'Phvul.011G071800' => 'pvu', 'Phvul.011G090400' => 'pvu', 'Potri.004G013400' => 'ptr', 'Potri.004G188100' => 'ptr', 'Potri.008G195500' => 'ptr', 'Potri.009G148800' => 'ptr', 'Potri.011G004700' => 'ptr', 'Pp3c17_22810' => 'ppa', 'Pp3c18_4480' => 'ppa', 'Pp3c19_13030' => 'ppa', 'Pp3c1_33620' => 'ppa', 'Pp3c2_9380' => 'ppa', 'PRCOL_00001023' => 'pco', 'Prupe.3G216300' => 'ppe', 'Prupe.4G019500' => 'ppe', 'Prupe.6G092500' => 'ppe', 'Prupe.6G119200' => 'ppe', 'Psat0s1945g0080' => 'psa', 'Psat0s4167g0040' => 'psa', 'Psat1g185800' => 'psa', 'Psat4g006440' => 'psa', 'Psat4g006480' => 'psa', 'Psat4g168120' => 'psa', 'Psat5g255680' => 'psa', 'Psat5g261760' => 'psa', 'Psat7g222120' => 'psa', 'PSO063G7252' => 'pso', 'PSO170G4778' => 'pso', 'PSO210G2249' => 'pso', 'PSO339G2411' => 'pso', 'PSO339G2457' => 'pso', 'PSO339G2854' => 'pso', 'PSO339G4288' => 'pso', 'PSO339G4615' => 'pso', 'PSO384G2796' => 'pso', 'PSO384G2940' => 'pso', 'PSO384G4227' => 'pso', 'PSO478G1425' => 'pso', 'PSO541G3863' => 'pso', 'PSO675G0507' => 'pso', 'PSO782G0338' => 'pso', 'PSO832G0644' => 'pso', 'QL01p013664' => 'qlo', 'QL01p036598' => 'qlo', 'QL05p072984' => 'qlo', 'QL08p005768' => 'qlo', 'QL08p032743' => 'qlo', 'QL93p0073_0439' => 'qlo', 'QL93p0073_0444' => 'qlo', 'RcHm_v2.0_Chr5g0002851' => 'rch', 'RcHm_v2.0_Chr5g0055201' => 'rch', 'RcHm_v2.0_Chr5g0061191' => 'rch', 'RcHm_v2.0_Chr7g0203231' => 'rch', 'Rhsim01G0208100' => 'rsi', 'Rhsim01G0208200' => 'rsi', 'Rhsim02G0106500' => 'rsi', 'Rhsim03G0107900' => 'rsi', 'Rhsim06G0163400' => 'rsi', 'Rhsim13G0105200' => 'rsi', 'Sabra04G0006300' => 'sbr', 'Sabra04G0127000' => 'sbr', 'Sabra08G0148700' => 'sbr', 'Sabra09G0117400' => 'sbr', 'SalBow1G3326' => 'sbo', 'SalBow3G3228' => 'sbo', 'SalBow6G1634' => 'sbo', 'SalBow6G3603' => 'sbo', 'SalBow6G5266' => 'sbo', 'SalBow7G2265' => 'sbo', 'SalBow8G0850' => 'sbo', 'SalBow8G2592' => 'sbo', 'Sc05g0009240' => 'sci', 'Sc12g0002300' => 'sci', 'Sc21g0000100' => 'sci', 'Sc21g0004720' => 'sci', 'Sed0002949' => 'sed', 'Sed0004114' => 'sed', 'Sed0004306' => 'sed', 'Sed0006172' => 'sed', 'Sed0008413' => 'sed', 'Sed0013809' => 'sed', 'Sed0019556' => 'sed', 'SEGI_03570' => 'sgi', 'SEGI_07859' => 'sgi', 'SEGI_15042' => 'sgi', 'SEGI_16263' => 'sgi', 'SEGI_16552' => 'sgi', 'SEGI_24331' => 'sgi', 'SEGI_27316' => 'sgi', 'SEGI_29521' => 'sgi', 'SEGI_41342' => 'sgi', 'SGA_v2.0_scaffold27G11617' => 'sas', 'SGA_v2.0_scaffold316G48428' => 'sas', 'SGA_v2.0_scaffold49G18261' => 'sas', 'SGA_v2.0_scaffold7G03831' => 'sas', 'SGA_v2.0_scaffold93G28359' => 'sas', 'SHI02210' => 'shi', 'SHI06028' => 'shi', 'SHI06321' => 'shi', 'SMO111G0012' => 'smo', 'SMO228G0080' => 'smo', 'SMO356G0756' => 'smo', 'Solyc02g080620.3' => 'sly', 'Solyc06g074530.1' => 'sly', 'Solyc11g066890.1' => 'sly', 'Solyc11g072520.3' => 'sly', 'Sopen02g025330' => 'spe', 'Sopen06g031000' => 'spe', 'Sopen09g008240' => 'spe', 'Sopen09g025210' => 'spe', 'Sopen11g026600' => 'spe', 'Sopen11g030170' => 'spe', 'Sp1g10420' => 'spa', 'Sp3g06570' => 'spa', 'Sp4g10660' => 'spa', 'Sp5g16460' => 'spa', 'Sp6g22710' => 'spa', 'TAR365G0112' => 'tar', 'TAR369G0717' => 'tar', 'TAR374G0976' => 'tar', 'TAR623G1128' => 'tar', 'TAR626G1937' => 'tar', 'TAR627G0123' => 'tar', 'TAR628G0305' => 'tar', 'TAR636G1176' => 'tar', 'TAR636G2442' => 'tar', 'THA.LOC104800556' => 'tha', 'THA.LOC104809501' => 'tha', 'THA.LOC104815126' => 'tha', 'THA.LOC104815732' => 'tha', 'THA.LOC104823528' => 'tha', 'Thecc.02G365600' => 'tca', 'Thecc.06G222300' => 'tca', 'Thecc.09G261800' => 'tca', 'Thecc.09G291400' => 'tca', 'Thhalv10003028m.g' => 'esa', 'Thhalv10007886m.g' => 'esa', 'Thhalv10016085m.g' => 'esa', 'Thhalv10016681m.g' => 'esa', 'Thhalv10020951m.g' => 'esa', 'TPR.G15598' => 'tpr', 'TPR.G29305' => 'tpr', 'TPR.G32395' => 'tpr', 'TPR.G36998' => 'tpr', 'TPR.G4227' => 'tpr', 'TWI18G1433' => 'twi', 'TWI31G0755' => 'twi', 'TWI38G0912' => 'twi', 'TWI75G1097' => 'twi', 'TWI75G1619' => 'twi', 'TWI79G1336' => 'twi', 'unitig_0.g943' => 'ugi', 'unitig_0.g944' => 'ugi', 'unitig_22.g6646' => 'ugi', 'unitig_37.g12681' => 'ugi', 'unitig_8.g3290' => 'ugi', 'vmacro03278' => 'vma', 'vmacro12197' => 'vma', 'vmacro14478' => 'vma', 'vmacro15787' => 'vma', 'vmacro15789' => 'vma', 'vmacro15790' => 'vma', 'vmacro15806' => 'vma', 'vmacro22907' => 'vma', 'vmacro22908' => 'vma', 'vmacro22909' => 'vma', 'vmacro23108' => 'vma', 'VMungo0540G0540' => 'vmu', 'VMungo0540G2468' => 'vmu', 'VMungo1080G0390' => 'vmu', 'VMungo1080G1165' => 'vmu', 'VMungo1127G0170' => 'vmu', 'VMungo1127G2099' => 'vmu', 'VMungo1215G3013' => 'vmu', 'Zm00001eb013110' => 'zma', 'Zm00001eb084260' => 'zma', 'Zm00001eb096110' => 'zma', 'Zm00001eb217510' => 'zma', 'Zm00001eb322550' => 'zma', 'Zm00001eb390770' => 'zma', 'Zm00001eb397170' => 'zma', 'Zm00001eb404610' => 'zma', 'Zm00001eb421790' => 'zma' ), 'gf_id' => 'HOM05D000911', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000911' ), 'data_identifier' => 'HOM05D000911', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000911', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27780' => 'bna', 'A03p35380' => 'bna', 'A04p21160' => 'bna', 'A05p40570' => 'bna', 'A06p26900' => 'bna', 'A08p33230' => 'bna', 'A09p65960' => 'bna', 'A10p18290' => 'bna', 'Aa31LG1G12990' => 'aar', 'Aa31LG1G2980' => 'aar', 'Aa31LG4G14320' => 'aar', 'Aa31LG7G11800' => 'aar', 'Aa31sc36G50' => 'aar', 'Aa31sc36G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3721' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5459' => 'aag', 'Actinidia03028' => 'ach', 'Actinidia03753' => 'ach', 'Actinidia04187' => 'ach', 'Actinidia05509' => 'ach', 'Actinidia24180' => 'ach', 'Actinidia26906' => 'ach', 'Actinidia37097' => 'ach', 'Actinidia38249' => 'ach', 'Ah.01g003470' => 'amhyb', 'Ah.01g004580' => 'amhyb', 'Ah.01g014850' => 'amhyb', 'Ah.01g016830' => 'amhyb', 'Ah.14g088000' => 'amhyb', 'AL1G22980' => 'aly', 'AL3G18990' => 'aly', 'AL4G22440' => 'aly', 'AL4G33180' => 'aly', 'AL5G22920' => 'aly', 'AL6G33660' => 'aly', 'AL8G20720' => 'aly', 'Aqoxy1G00935' => 'aox', 'Aqoxy1G02094' => 'aox', 'Aqoxy2G01239' => 'aox', 'Aqoxy4G01870' => 'aox', 'Aqoxy7G00450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.36ZVTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71EM27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5D6C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH3WRE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3NCM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RIM768' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YB5YRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z36GDV' => 'arhy', 'AT1G08250' => 'ath', 'AT1G11790' => 'ath', 'AT2G27820' => 'ath', 'AT3G07630' => 'ath', 'AT3G44720' => 'ath', 'AT5G22630' => 'ath', 'ATR0693G304' => 'atr', 'ATR0794G109' => 'atr', 'ATR0820G120' => 'atr', 'ATR1159G064' => 'atr', 'Atru.chr10.2239' => 'acertr', 'Atru.chr3.3371' => 'acertr', 'Atru.chr6.3202' => 'acertr', 'AUR62006499' => 'cqu', 'AUR62012718' => 'cqu', 'AUR62021938' => 'cqu', 'AUR62023932' => 'cqu', 'AUR62025034' => 'cqu', 'AUR62025035' => 'cqu', 'AUR62038307' => 'cqu', 'AUR62043466' => 'cqu', 'BcaB02g10748' => 'bca', 'BcaB03g13231' => 'bca', 'BcaB03g14689' => 'bca', 'BcaB05g22716' => 'bca', 'BcaB06g28172' => 'bca', 'BcaB08g36413' => 'bca', 'BcaC01g02186' => 'bca', 'BcaC01g04272' => 'bca', 'BcaC02g08080' => 'bca', 'BcaC02g08227' => 'bca', 'BcaC03g13901' => 'bca', 'BcaC04g19593' => 'bca', 'BcaC04g20874' => 'bca', 'BcaC05g29557' => 'bca', 'BcaC06g35505' => 'bca', 'BcaC07g41954' => 'bca', 'BcaC07g41955' => 'bca', 'BcaC07g41956' => 'bca', 'BcaC07g42519' => 'bca', 'BcaC07g42520' => 'bca', 'BcaC07g42523' => 'bca', 'BcaC07g42524' => 'bca', 'BcaC07g42525' => 'bca', 'BcaC08g47480' => 'bca', 'BcaC08g47481' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00530' => 'bna', 'BolC2t07178H' => 'bol', 'BolC3t16567H' => 'bol', 'BolC4t27234H' => 'bol', 'BolC5t29728H' => 'bol', 'BolC5t34622H' => 'bol', 'BolC6t40321H' => 'bol', 'BolC7t42028H' => 'bol', 'BolC8t49125H' => 'bol', 'BolC8t52538H' => 'bol', 'BolC8t52539H' => 'bol', 'BolC9t56681H' => 'bol', 'BolC9t58266H' => 'bol', 'BolSC21t60294H' => 'bol', 'BraA02t05670Z' => 'bra', 'BraA03t12716Z' => 'bra', 'BraA04t17685Z' => 'bra', 'BraA05t22788Z' => 'bra', 'BraA06t24032Z' => 'bra', 'BraA06t25625Z' => 'bra', 'BraA07t27930Z' => 'bra', 'BraA08t35242Z' => 'bra', 'BraA09t38609Z' => 'bra', 'BraA10t43905Z' => 'bra', 'C02p11060' => 'bna', 'C03p42990' => 'bna', 'C03p67310' => 'bna', 'C04p56990' => 'bna', 'C04p58660' => 'bna', 'C05p09890' => 'bna', 'C05p59680' => 'bna', 'C06p19830' => 'bna', 'C06p53040' => 'bna', 'C07p15230' => 'bna', 'C08p50070' => 'bna', 'C08p50090' => 'bna', 'C09p38330' => 'bna', 'C09p53940' => 'bna', 'CAN.G1014.1' => 'can', 'CAN.G644.30' => 'can', 'CAN.G84.47' => 'can', 'CAN.G919.8' => 'can', 'CANSAT54G0113' => 'cansat', 'CANSAT54G1286' => 'cansat', 'CANSAT64G1020' => 'cansat', 'CARHR008080' => 'chi', 'CARHR008090' => 'chi', 'CARHR012130' => 'chi', 'CARHR038390' => 'chi', 'CARHR082330' => 'chi', 'CARHR120520' => 'chi', 'CARHR151470' => 'chi', 'CARHR190950' => 'chi', 'Carub.0001s0760' => 'cru', 'Carub.0001s1146' => 'cru', 'Carub.0003s0721' => 'cru', 'Carub.0004s0858' => 'cru', 'Carub.0005s1040' => 'cru', 'Carub.0006s2035' => 'cru', 'Carub.0015s0005' => 'cru', 'Ca_01607_v3' => 'car', 'Ca_01677_v3' => 'car', 'Ca_06087_v3' => 'car', 'Ca_19238_v3' => 'car', 'Ca_19373_v3' => 'car', 'Ca_21079_v3' => 'car', 'CBR_g54016' => 'cbr', 'CBR_g54018' => 'cbr', 'CBR_g54020' => 'cbr', 'Cc01_g09780' => 'ccan', 'Cc01_g11680' => 'ccan', 'Cc02_g15610' => 'ccan', 'Cc05_g04350' => 'ccan', 'Cc09_g01580' => 'ccan', 'CDE01G0795' => 'cde', 'CDE02G2024' => 'cde', 'CDE02G2260' => 'cde', 'CDE02G4561' => 'cde', 'CDE05G2733' => 'cde', 'CDE05G3422' => 'cde', 'CDE06G2003' => 'cde', 'CDE08G0576' => 'cde', 'CDE09G0048' => 'cde', 'CDE11G0805' => 'cde', 'Cfa003644' => 'cfa', 'Cfa006290' => 'cfa', 'Cfa010080' => 'cfa', 'Cfa011376' => 'cfa', 'Cfa011576' => 'cfa', 'Cfa011577' => 'cfa', 'Cfa014389' => 'cfa', 'Ciclev10006044m.g' => 'ccl', 'Ciclev10006954m.g' => 'ccl', 'Ciclev10015131m.g' => 'ccl', 'Ciclev10015580m.g' => 'ccl', 'Ciclev10028359m.g' => 'ccl', 'Ciclev10028573m.g' => 'ccl', 'CiPaw.03G159300' => 'cil', 'CiPaw.04G115100' => 'cil', 'CiPaw.09G092800' => 'cil', 'CiPaw.10G071800' => 'cil', 'CiPaw.13G105800' => 'cil', 'CiPaw.13G141000' => 'cil', 'CiPaw.14G103400' => 'cil', 'ClCG01G012700' => 'cla', 'ClCG01G012720' => 'cla', 'ClCG01G021920' => 'cla', 'ClCG02G008870' => 'cla', 'ClCG02G020840' => 'cla', 'ClCG02G021930' => 'cla', 'COL.COLO4_19302' => 'col', 'COL.COLO4_25262' => 'col', 'COL.COLO4_31788' => 'col', 'Cpa.g.c34684' => 'cpa', 'Cpa.g.c36520.1' => 'cpa', 'Cpa.g.c45626' => 'cpa', 'Cpa.g.sc121.17' => 'cpa', 'Cpa.g.sc13.22' => 'cpa', 'Cpa.g.sc87.88' => 'cpa', 'Cre06.g261800' => 'cre', 'CsaV3_1G014500' => 'csa', 'CsaV3_1G014510' => 'csa', 'CsaV3_2G034880' => 'csa', 'CsaV3_6G014760' => 'csa', 'CsaV3_6G021500' => 'csa', 'CsaV3_6G048980' => 'csa', 'CSS0002511' => 'camsi', 'CSS0007556' => 'camsi', 'CSS0008532' => 'camsi', 'CSS0009709' => 'camsi', 'CSS0010486' => 'camsi', 'CSS0016768' => 'camsi', 'CSS0023512' => 'camsi', 'CSS0025341' => 'camsi', 'CSS0027999' => 'camsi', 'CSS0028944' => 'camsi', 'CSS0032292' => 'camsi', 'CSS0032464' => 'camsi', 'CSS0037153' => 'camsi', 'CSS0039256' => 'camsi', 'CSS0048392' => 'camsi', 'CSS0050458' => 'camsi', 'DCAR_004224' => 'dca', 'DCAR_006147' => 'dca', 'DCAR_006465' => 'dca', 'DCAR_008159' => 'dca', 'DCAR_012164' => 'dca', 'DCAR_019764' => 'dca', 'Dinv05418' => 'din', 'Dinv10839' => 'din', 'Dinv12521' => 'din', 'Dinv13900' => 'din', 'Dinv29426' => 'din', 'Duzib150G0263' => 'dzi', 'Duzib168G1178' => 'dzi', 'Duzib168G1924' => 'dzi', 'Duzib170G0299' => 'dzi', 'Duzib170G0813' => 'dzi', 'Duzib235G1128' => 'dzi', 'Duzib248G1060' => 'dzi', 'ECA232G1910' => 'eca', 'ECA233G4621' => 'eca', 'ECA238G1216' => 'eca', 'ECA238G1784' => 'eca', 'ECA248G1242' => 'eca', 'EL10Ac8g20071' => 'bvu', 'EL10Ac9g21086' => 'bvu', 'EL10Ac9g22407' => 'bvu', 'EL10Ac9g22412' => 'bvu', 'Eucgr.A01119' => 'egr', 'Eucgr.E04043' => 'egr', 'Eucgr.J00428' => 'egr', 'Eucgr.J00958' => 'egr', 'FAN11G3091' => 'fan', 'FAN11G3651' => 'fan', 'FAN16G2566' => 'fan', 'FAN21G3155' => 'fan', 'FAN21G3400' => 'fan', 'FAN21G3543' => 'fan', 'FAN25G0234' => 'fan', 'FAN25G1422' => 'fan', 'FAN25G3392' => 'fan', 'FvH4_3g01940' => 'fve', 'FvH4_3g29870' => 'fve', 'FvH4_3g33680' => 'fve', 'Glyma.09G004200' => 'gma', 'Glyma.11G151288' => 'gma', 'Glyma.11G189100' => 'gma', 'Glyma.12G072500' => 'gma', 'Glyma.12G085500' => 'gma', 'Glyma.12G181800' => 'gma', 'Glyma.12G193000' => 'gma', 'Glyma.13G309300' => 'gma', 'Glyma.13G319000' => 'gma', 'Glyma.17G012600' => 'gma', 'Gohir.A06G148600' => 'ghi', 'Gohir.A07G115800' => 'ghi', 'Gohir.A08G003600' => 'ghi', 'Gohir.A09G093300' => 'ghi', 'Gohir.A09G105400' => 'ghi', 'Gohir.A09G105500' => 'ghi', 'Gohir.D06G154600' => 'ghi', 'Gohir.D07G120200' => 'ghi', 'Gohir.D08G013900' => 'ghi', 'Gohir.D09G093100' => 'ghi', 'Gohir.D09G102200' => 'ghi', 'Gohir.D09G102300' => 'ghi', 'Gorai.001G129400' => 'gra', 'Gorai.004G008200' => 'gra', 'Gorai.006G109800' => 'gra', 'Gorai.006G119500' => 'gra', 'Gorai.006G121300' => 'gra', 'Gorai.010G180700' => 'gra', 'GSVIVG01012716001' => 'vvi', 'GSVIVG01025118001' => 'vvi', 'GSVIVG01030439001' => 'vvi', 'GSVIVG01031397001' => 'vvi', 'HanXRQChr01g0004201' => 'han', 'HanXRQChr02g0054941' => 'han', 'HanXRQChr05g0141811' => 'han', 'HanXRQChr07g0197751' => 'han', 'HanXRQChr11g0346691' => 'han', 'HanXRQChr13g0396971' => 'han', 'HanXRQChr14g0432951' => 'han', 'HanXRQChr14g0452001' => 'han', 'HanXRQChr15g0496681' => 'han', 'HanXRQChr17g0557491' => 'han', 'HanXRQChr17g0557501' => 'han', 'Haze_06809' => 'cav', 'Haze_12852' => 'cav', 'Haze_15850' => 'cav', 'Haze_23446' => 'cav', 'Haze_23942' => 'cav', 'Haze_23943' => 'cav', 'Hma1.2p1_0091F.1_g046450' => 'hma', 'Hma1.2p1_0128F.1_g059910' => 'hma', 'Hma1.2p1_0249F.1_g102260' => 'hma', 'Hma1.2p1_0453F.1_g156190' => 'hma', 'Hma1.2p1_0695F.1_g204380' => 'hma', 'Hma1.2p1_0749F.1_g212650' => 'hma', 'Hma1.2p1_2156F.1_g315420' => 'hma', 'Hma1.2p1_2686F.1_g326940' => 'hma', 'HPP92_006428' => 'vpl', 'HPP92_012069' => 'vpl', 'HPP92_014129' => 'vpl', 'HPP92_014133' => 'vpl', 'HPP92_017315' => 'vpl', 'HPP92_026445' => 'vpl', 'HPP92_026446' => 'vpl', 'Hund00774' => 'sun', 'Hund07682' => 'sun', 'Hund21413' => 'sun', 'Hund23462' => 'sun', 'Hund23463' => 'sun', 'Lalb_Chr03g0027911' => 'lal', 'Lalb_Chr13g0304271' => 'lal', 'Lalb_Chr19g0137471' => 'lal', 'Lalb_Chr22g0350651' => 'lal', 'Lalb_Chr24g0395151' => 'lal', 'Lj1A1231T40' => 'lonja', 'Lj1A221T48' => 'lonja', 'Lj1C924T12' => 'lonja', 'Lj2C993G6' => 'lonja', 'Lj3g0005790' => 'lja', 'Lj3g0015432' => 'lja', 'Lj3g0017722' => 'lja', 'Lj3g0018497' => 'lja', 'Lj4g0025071' => 'lja', 'Lsat_1_v5_gn_1_129680' => 'lsa', 'Lsat_1_v5_gn_2_25321' => 'lsa', 'Lsat_1_v5_gn_2_95461' => 'lsa', 'Lsat_1_v5_gn_4_159620' => 'lsa', 'Lsat_1_v5_gn_6_41301' => 'lsa', 'Lsat_1_v5_gn_6_74660' => 'lsa', 'Lsat_1_v5_gn_7_11520' => 'lsa', 'Lsat_1_v5_gn_9_67680' => 'lsa', 'Manes.04G008300' => 'mes', 'Manes.04G008400' => 'mes', 'Manes.04G026500' => 'mes', 'Manes.10G135300' => 'mes', 'Manes.11G157300' => 'mes', 'Manes.12G074000' => 'mes', 'Manes.16G006200' => 'mes', 'Manes.17G026400' => 'mes', 'Mapoly0024s0086' => 'mpo', 'Mapoly0024s0087' => 'mpo', 'Mapoly0071s0057' => 'mpo', 'Mapoly0204s0012' => 'mpo', 'MBI04_g37681_MAGBIO' => 'mbi', 'MBI05_g17779_MAGBIO' => 'mbi', 'MBI12_g31184_MAGBIO' => 'mbi', 'MBI17_g11083_MAGBIO' => 'mbi', 'MBI18_g03883_MAGBIO' => 'mbi', 'MBI18_g28940_MAGBIO' => 'mbi', 'MCO01G690' => 'mco', 'MD03G1109900' => 'mdo', 'MD03G1134800' => 'mdo', 'MD05G1348000' => 'mdo', 'MD10G1322400' => 'mdo', 'MD11G1123300' => 'mdo', 'MD11G1157600' => 'mdo', 'Medtr2g084875' => 'mtr', 'Medtr2g088130' => 'mtr', 'Medtr4g055310' => 'mtr', 'Medtr4g061070' => 'mtr', 'Medtr4g132250' => 'mtr', 'MELO3C004795.2' => 'cme', 'MELO3C004797.2' => 'cme', 'MELO3C007396.2' => 'cme', 'MELO3C019277.2' => 'cme', 'MELO3C021449.2' => 'cme', 'MELO3C025736.2' => 'cme', 'Migut.D02175' => 'egut', 'Migut.H01573' => 'egut', 'Migut.M01327' => 'egut', 'Migut.N02513' => 'egut', 'MSTRG.14638' => 'ama', 'MSTRG.18632' => 'ama', 'MSTRG.7203' => 'ama', 'Nitab4.5_0000533g0140' => 'nta', 'Nitab4.5_0000888g0150' => 'nta', 'Nitab4.5_0001453g0040' => 'nta', 'Nitab4.5_0002827g0090' => 'nta', 'Nitab4.5_0003082g0040' => 'nta', 'Nitab4.5_0007799g0040' => 'nta', 'Nitab4.5_0008983g0010' => 'nta', 'Nitab4.5_0009017g0020' => 'nta', 'Nn1g02132' => 'nnu', 'Nn1g03492' => 'nnu', 'Nn1g03493' => 'nnu', 'Nn1g03494' => 'nnu', 'Nn1g07164' => 'nnu', 'Nn1g07291' => 'nnu', 'Nn2g10655' => 'nnu', 'Nn2g11652' => 'nnu', 'Nn2g14008' => 'nnu', 'Nn3g17476' => 'nnu', 'Nn3g17477' => 'nnu', 'Nn4g22370' => 'nnu', 'Nn4g25255' => 'nnu', 'Nn5g27755' => 'nnu', 'Nn6g34260' => 'nnu', 'Nn6g35041' => 'nnu', 'Oeu005924.1' => 'oeu', 'Oeu008383.1' => 'oeu', 'Oeu014928.1' => 'oeu', 'Oeu019889.1' => 'oeu', 'Oeu022271.1' => 'oeu', 'Oeu025271.1' => 'oeu', 'Oeu036302.1' => 'oeu', 'Oeu044100.1' => 'oeu', 'Os01g0528300' => 'osa', 'Os03g0286200' => 'osa', 'Os04g0406600' => 'osa', 'Os07g0512000' => 'osa', 'Os07g0694600' => 'osa', 'Os08g0411000' => 'osa', 'Os09g0565700' => 'osa', 'Os09g0566050' => 'osa', 'Os10g0523700' => 'osa', 'Peaxi162Scf00002g00514' => 'pax', 'Peaxi162Scf00047g01817' => 'pax', 'Peaxi162Scf00114g00001' => 'pax', 'Peaxi162Scf00147g00613' => 'pax', 'Peaxi162Scf00389g00425' => 'pax', 'PGR042G1139' => 'pgr', 'PGR042G3273' => 'pgr', 'PGR102G2180' => 'pgr', 'PGR119G0234' => 'pgr', 'PGR119G0668' => 'pgr', 'PGSC0003DMG400007122' => 'stu', 'PGSC0003DMG400016478' => 'stu', 'PGSC0003DMG400025374' => 'stu', 'PGSC0003DMG400026536' => 'stu', 'Phvul.003G079600' => 'pvu', 'Phvul.005G115600' => 'pvu', 'Phvul.005G127100' => 'pvu', 'Phvul.006G149500' => 'pvu', 'Phvul.006G149600' => 'pvu', 'Phvul.011G071800' => 'pvu', 'Phvul.011G090400' => 'pvu', 'Potri.004G013400' => 'ptr', 'Potri.004G188100' => 'ptr', 'Potri.008G195500' => 'ptr', 'Potri.009G148800' => 'ptr', 'Potri.011G004700' => 'ptr', 'Pp3c17_22810' => 'ppa', 'Pp3c18_4480' => 'ppa', 'Pp3c19_13030' => 'ppa', 'Pp3c1_33620' => 'ppa', 'Pp3c2_9380' => 'ppa', 'PRCOL_00001023' => 'pco', 'Prupe.3G216300' => 'ppe', 'Prupe.4G019500' => 'ppe', 'Prupe.6G092500' => 'ppe', 'Prupe.6G119200' => 'ppe', 'Psat0s1945g0080' => 'psa', 'Psat0s4167g0040' => 'psa', 'Psat1g185800' => 'psa', 'Psat4g006440' => 'psa', 'Psat4g006480' => 'psa', 'Psat4g168120' => 'psa', 'Psat5g255680' => 'psa', 'Psat5g261760' => 'psa', 'Psat7g222120' => 'psa', 'PSO063G7252' => 'pso', 'PSO170G4778' => 'pso', 'PSO210G2249' => 'pso', 'PSO339G2411' => 'pso', 'PSO339G2457' => 'pso', 'PSO339G2854' => 'pso', 'PSO339G4288' => 'pso', 'PSO339G4615' => 'pso', 'PSO384G2796' => 'pso', 'PSO384G2940' => 'pso', 'PSO384G4227' => 'pso', 'PSO478G1425' => 'pso', 'PSO541G3863' => 'pso', 'PSO675G0507' => 'pso', 'PSO782G0338' => 'pso', 'PSO832G0644' => 'pso', 'QL01p013664' => 'qlo', 'QL01p036598' => 'qlo', 'QL05p072984' => 'qlo', 'QL08p005768' => 'qlo', 'QL08p032743' => 'qlo', 'QL93p0073_0439' => 'qlo', 'QL93p0073_0444' => 'qlo', 'RcHm_v2.0_Chr5g0002851' => 'rch', 'RcHm_v2.0_Chr5g0055201' => 'rch', 'RcHm_v2.0_Chr5g0061191' => 'rch', 'RcHm_v2.0_Chr7g0203231' => 'rch', 'Rhsim01G0208100' => 'rsi', 'Rhsim01G0208200' => 'rsi', 'Rhsim02G0106500' => 'rsi', 'Rhsim03G0107900' => 'rsi', 'Rhsim06G0163400' => 'rsi', 'Rhsim13G0105200' => 'rsi', 'Sabra04G0006300' => 'sbr', 'Sabra04G0127000' => 'sbr', 'Sabra08G0148700' => 'sbr', 'Sabra09G0117400' => 'sbr', 'SalBow1G3326' => 'sbo', 'SalBow3G3228' => 'sbo', 'SalBow6G1634' => 'sbo', 'SalBow6G3603' => 'sbo', 'SalBow6G5266' => 'sbo', 'SalBow7G2265' => 'sbo', 'SalBow8G0850' => 'sbo', 'SalBow8G2592' => 'sbo', 'Sc05g0009240' => 'sci', 'Sc12g0002300' => 'sci', 'Sc21g0000100' => 'sci', 'Sc21g0004720' => 'sci', 'Sed0002949' => 'sed', 'Sed0004114' => 'sed', 'Sed0004306' => 'sed', 'Sed0006172' => 'sed', 'Sed0008413' => 'sed', 'Sed0013809' => 'sed', 'Sed0019556' => 'sed', 'SEGI_03570' => 'sgi', 'SEGI_07859' => 'sgi', 'SEGI_15042' => 'sgi', 'SEGI_16263' => 'sgi', 'SEGI_16552' => 'sgi', 'SEGI_24331' => 'sgi', 'SEGI_27316' => 'sgi', 'SEGI_29521' => 'sgi', 'SEGI_41342' => 'sgi', 'SGA_v2.0_scaffold27G11617' => 'sas', 'SGA_v2.0_scaffold316G48428' => 'sas', 'SGA_v2.0_scaffold49G18261' => 'sas', 'SGA_v2.0_scaffold7G03831' => 'sas', 'SGA_v2.0_scaffold93G28359' => 'sas', 'SHI02210' => 'shi', 'SHI06028' => 'shi', 'SHI06321' => 'shi', 'SMO111G0012' => 'smo', 'SMO228G0080' => 'smo', 'SMO356G0756' => 'smo', 'Solyc02g080620.3' => 'sly', 'Solyc06g074530.1' => 'sly', 'Solyc11g066890.1' => 'sly', 'Solyc11g072520.3' => 'sly', 'Sopen02g025330' => 'spe', 'Sopen06g031000' => 'spe', 'Sopen09g008240' => 'spe', 'Sopen09g025210' => 'spe', 'Sopen11g026600' => 'spe', 'Sopen11g030170' => 'spe', 'Sp1g10420' => 'spa', 'Sp3g06570' => 'spa', 'Sp4g10660' => 'spa', 'Sp5g16460' => 'spa', 'Sp6g22710' => 'spa', 'TAR365G0112' => 'tar', 'TAR369G0717' => 'tar', 'TAR374G0976' => 'tar', 'TAR623G1128' => 'tar', 'TAR626G1937' => 'tar', 'TAR627G0123' => 'tar', 'TAR628G0305' => 'tar', 'TAR636G1176' => 'tar', 'TAR636G2442' => 'tar', 'THA.LOC104800556' => 'tha', 'THA.LOC104809501' => 'tha', 'THA.LOC104815126' => 'tha', 'THA.LOC104815732' => 'tha', 'THA.LOC104823528' => 'tha', 'Thecc.02G365600' => 'tca', 'Thecc.06G222300' => 'tca', 'Thecc.09G261800' => 'tca', 'Thecc.09G291400' => 'tca', 'Thhalv10003028m.g' => 'esa', 'Thhalv10007886m.g' => 'esa', 'Thhalv10016085m.g' => 'esa', 'Thhalv10016681m.g' => 'esa', 'Thhalv10020951m.g' => 'esa', 'TPR.G15598' => 'tpr', 'TPR.G29305' => 'tpr', 'TPR.G32395' => 'tpr', 'TPR.G36998' => 'tpr', 'TPR.G4227' => 'tpr', 'TWI18G1433' => 'twi', 'TWI31G0755' => 'twi', 'TWI38G0912' => 'twi', 'TWI75G1097' => 'twi', 'TWI75G1619' => 'twi', 'TWI79G1336' => 'twi', 'unitig_0.g943' => 'ugi', 'unitig_0.g944' => 'ugi', 'unitig_22.g6646' => 'ugi', 'unitig_37.g12681' => 'ugi', 'unitig_8.g3290' => 'ugi', 'vmacro03278' => 'vma', 'vmacro12197' => 'vma', 'vmacro14478' => 'vma', 'vmacro15787' => 'vma', 'vmacro15789' => 'vma', 'vmacro15790' => 'vma', 'vmacro15806' => 'vma', 'vmacro22907' => 'vma', 'vmacro22908' => 'vma', 'vmacro22909' => 'vma', 'vmacro23108' => 'vma', 'VMungo0540G0540' => 'vmu', 'VMungo0540G2468' => 'vmu', 'VMungo1080G0390' => 'vmu', 'VMungo1080G1165' => 'vmu', 'VMungo1127G0170' => 'vmu', 'VMungo1127G2099' => 'vmu', 'VMungo1215G3013' => 'vmu', 'Zm00001eb013110' => 'zma', 'Zm00001eb084260' => 'zma', 'Zm00001eb096110' => 'zma', 'Zm00001eb217510' => 'zma', 'Zm00001eb322550' => 'zma', 'Zm00001eb390770' => 'zma', 'Zm00001eb397170' => 'zma', 'Zm00001eb404610' => 'zma', 'Zm00001eb421790' => 'zma' ) $gf_id = 'HOM05D000911' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000911' ) $data_identifier = 'HOM05D000911' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 16, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 5, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 6, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 8, 'nnu' => (int) 16, 'oeu' => (int) 8, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 5, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 16, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421790' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000911', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27780' => 'bna', 'A03p35380' => 'bna', 'A04p21160' => 'bna', 'A05p40570' => 'bna', 'A06p26900' => 'bna', 'A08p33230' => 'bna', 'A09p65960' => 'bna', 'A10p18290' => 'bna', 'Aa31LG1G12990' => 'aar', 'Aa31LG1G2980' => 'aar', 'Aa31LG4G14320' => 'aar', 'Aa31LG7G11800' => 'aar', 'Aa31sc36G50' => 'aar', 'Aa31sc36G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3721' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5459' => 'aag', 'Actinidia03028' => 'ach', 'Actinidia03753' => 'ach', 'Actinidia04187' => 'ach', 'Actinidia05509' => 'ach', 'Actinidia24180' => 'ach', 'Actinidia26906' => 'ach', 'Actinidia37097' => 'ach', 'Actinidia38249' => 'ach', 'Ah.01g003470' => 'amhyb', 'Ah.01g004580' => 'amhyb', 'Ah.01g014850' => 'amhyb', 'Ah.01g016830' => 'amhyb', 'Ah.14g088000' => 'amhyb', 'AL1G22980' => 'aly', 'AL3G18990' => 'aly', 'AL4G22440' => 'aly', 'AL4G33180' => 'aly', 'AL5G22920' => 'aly', 'AL6G33660' => 'aly', 'AL8G20720' => 'aly', 'Aqoxy1G00935' => 'aox', 'Aqoxy1G02094' => 'aox', 'Aqoxy2G01239' => 'aox', 'Aqoxy4G01870' => 'aox', 'Aqoxy7G00450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.36ZVTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71EM27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5D6C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH3WRE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3NCM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RIM768' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YB5YRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z36GDV' => 'arhy', 'AT1G08250' => 'ath', 'AT1G11790' => 'ath', 'AT2G27820' => 'ath', 'AT3G07630' => 'ath', 'AT3G44720' => 'ath', 'AT5G22630' => 'ath', 'ATR0693G304' => 'atr', 'ATR0794G109' => 'atr', 'ATR0820G120' => 'atr', 'ATR1159G064' => 'atr', 'Atru.chr10.2239' => 'acertr', 'Atru.chr3.3371' => 'acertr', 'Atru.chr6.3202' => 'acertr', 'AUR62006499' => 'cqu', 'AUR62012718' => 'cqu', 'AUR62021938' => 'cqu', 'AUR62023932' => 'cqu', 'AUR62025034' => 'cqu', 'AUR62025035' => 'cqu', 'AUR62038307' => 'cqu', 'AUR62043466' => 'cqu', 'BcaB02g10748' => 'bca', 'BcaB03g13231' => 'bca', 'BcaB03g14689' => 'bca', 'BcaB05g22716' => 'bca', 'BcaB06g28172' => 'bca', 'BcaB08g36413' => 'bca', 'BcaC01g02186' => 'bca', 'BcaC01g04272' => 'bca', 'BcaC02g08080' => 'bca', 'BcaC02g08227' => 'bca', 'BcaC03g13901' => 'bca', 'BcaC04g19593' => 'bca', 'BcaC04g20874' => 'bca', 'BcaC05g29557' => 'bca', 'BcaC06g35505' => 'bca', 'BcaC07g41954' => 'bca', 'BcaC07g41955' => 'bca', 'BcaC07g41956' => 'bca', 'BcaC07g42519' => 'bca', 'BcaC07g42520' => 'bca', 'BcaC07g42523' => 'bca', 'BcaC07g42524' => 'bca', 'BcaC07g42525' => 'bca', 'BcaC08g47480' => 'bca', 'BcaC08g47481' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00530' => 'bna', 'BolC2t07178H' => 'bol', 'BolC3t16567H' => 'bol', 'BolC4t27234H' => 'bol', 'BolC5t29728H' => 'bol', 'BolC5t34622H' => 'bol', 'BolC6t40321H' => 'bol', 'BolC7t42028H' => 'bol', 'BolC8t49125H' => 'bol', 'BolC8t52538H' => 'bol', 'BolC8t52539H' => 'bol', 'BolC9t56681H' => 'bol', 'BolC9t58266H' => 'bol', 'BolSC21t60294H' => 'bol', 'BraA02t05670Z' => 'bra', 'BraA03t12716Z' => 'bra', 'BraA04t17685Z' => 'bra', 'BraA05t22788Z' => 'bra', 'BraA06t24032Z' => 'bra', 'BraA06t25625Z' => 'bra', 'BraA07t27930Z' => 'bra', 'BraA08t35242Z' => 'bra', 'BraA09t38609Z' => 'bra', 'BraA10t43905Z' => 'bra', 'C02p11060' => 'bna', 'C03p42990' => 'bna', 'C03p67310' => 'bna', 'C04p56990' => 'bna', 'C04p58660' => 'bna', 'C05p09890' => 'bna', 'C05p59680' => 'bna', 'C06p19830' => 'bna', 'C06p53040' => 'bna', 'C07p15230' => 'bna', 'C08p50070' => 'bna', 'C08p50090' => 'bna', 'C09p38330' => 'bna', 'C09p53940' => 'bna', 'CAN.G1014.1' => 'can', 'CAN.G644.30' => 'can', 'CAN.G84.47' => 'can', 'CAN.G919.8' => 'can', 'CANSAT54G0113' => 'cansat', 'CANSAT54G1286' => 'cansat', 'CANSAT64G1020' => 'cansat', 'CARHR008080' => 'chi', 'CARHR008090' => 'chi', 'CARHR012130' => 'chi', 'CARHR038390' => 'chi', 'CARHR082330' => 'chi', 'CARHR120520' => 'chi', 'CARHR151470' => 'chi', 'CARHR190950' => 'chi', 'Carub.0001s0760' => 'cru', 'Carub.0001s1146' => 'cru', 'Carub.0003s0721' => 'cru', 'Carub.0004s0858' => 'cru', 'Carub.0005s1040' => 'cru', 'Carub.0006s2035' => 'cru', 'Carub.0015s0005' => 'cru', 'Ca_01607_v3' => 'car', 'Ca_01677_v3' => 'car', 'Ca_06087_v3' => 'car', 'Ca_19238_v3' => 'car', 'Ca_19373_v3' => 'car', 'Ca_21079_v3' => 'car', 'CBR_g54016' => 'cbr', 'CBR_g54018' => 'cbr', 'CBR_g54020' => 'cbr', 'Cc01_g09780' => 'ccan', 'Cc01_g11680' => 'ccan', 'Cc02_g15610' => 'ccan', 'Cc05_g04350' => 'ccan', 'Cc09_g01580' => 'ccan', 'CDE01G0795' => 'cde', 'CDE02G2024' => 'cde', 'CDE02G2260' => 'cde', 'CDE02G4561' => 'cde', 'CDE05G2733' => 'cde', 'CDE05G3422' => 'cde', 'CDE06G2003' => 'cde', 'CDE08G0576' => 'cde', 'CDE09G0048' => 'cde', 'CDE11G0805' => 'cde', 'Cfa003644' => 'cfa', 'Cfa006290' => 'cfa', 'Cfa010080' => 'cfa', 'Cfa011376' => 'cfa', 'Cfa011576' => 'cfa', 'Cfa011577' => 'cfa', 'Cfa014389' => 'cfa', 'Ciclev10006044m.g' => 'ccl', 'Ciclev10006954m.g' => 'ccl', 'Ciclev10015131m.g' => 'ccl', 'Ciclev10015580m.g' => 'ccl', 'Ciclev10028359m.g' => 'ccl', 'Ciclev10028573m.g' => 'ccl', 'CiPaw.03G159300' => 'cil', 'CiPaw.04G115100' => 'cil', 'CiPaw.09G092800' => 'cil', 'CiPaw.10G071800' => 'cil', 'CiPaw.13G105800' => 'cil', 'CiPaw.13G141000' => 'cil', 'CiPaw.14G103400' => 'cil', 'ClCG01G012700' => 'cla', 'ClCG01G012720' => 'cla', 'ClCG01G021920' => 'cla', 'ClCG02G008870' => 'cla', 'ClCG02G020840' => 'cla', 'ClCG02G021930' => 'cla', 'COL.COLO4_19302' => 'col', 'COL.COLO4_25262' => 'col', 'COL.COLO4_31788' => 'col', 'Cpa.g.c34684' => 'cpa', 'Cpa.g.c36520.1' => 'cpa', 'Cpa.g.c45626' => 'cpa', 'Cpa.g.sc121.17' => 'cpa', 'Cpa.g.sc13.22' => 'cpa', 'Cpa.g.sc87.88' => 'cpa', 'Cre06.g261800' => 'cre', 'CsaV3_1G014500' => 'csa', 'CsaV3_1G014510' => 'csa', 'CsaV3_2G034880' => 'csa', 'CsaV3_6G014760' => 'csa', 'CsaV3_6G021500' => 'csa', 'CsaV3_6G048980' => 'csa', 'CSS0002511' => 'camsi', 'CSS0007556' => 'camsi', 'CSS0008532' => 'camsi', 'CSS0009709' => 'camsi', 'CSS0010486' => 'camsi', 'CSS0016768' => 'camsi', 'CSS0023512' => 'camsi', 'CSS0025341' => 'camsi', 'CSS0027999' => 'camsi', 'CSS0028944' => 'camsi', 'CSS0032292' => 'camsi', 'CSS0032464' => 'camsi', 'CSS0037153' => 'camsi', 'CSS0039256' => 'camsi', 'CSS0048392' => 'camsi', 'CSS0050458' => 'camsi', 'DCAR_004224' => 'dca', 'DCAR_006147' => 'dca', 'DCAR_006465' => 'dca', 'DCAR_008159' => 'dca', 'DCAR_012164' => 'dca', 'DCAR_019764' => 'dca', 'Dinv05418' => 'din', 'Dinv10839' => 'din', 'Dinv12521' => 'din', 'Dinv13900' => 'din', 'Dinv29426' => 'din', 'Duzib150G0263' => 'dzi', 'Duzib168G1178' => 'dzi', 'Duzib168G1924' => 'dzi', 'Duzib170G0299' => 'dzi', 'Duzib170G0813' => 'dzi', 'Duzib235G1128' => 'dzi', 'Duzib248G1060' => 'dzi', 'ECA232G1910' => 'eca', 'ECA233G4621' => 'eca', 'ECA238G1216' => 'eca', 'ECA238G1784' => 'eca', 'ECA248G1242' => 'eca', 'EL10Ac8g20071' => 'bvu', 'EL10Ac9g21086' => 'bvu', 'EL10Ac9g22407' => 'bvu', 'EL10Ac9g22412' => 'bvu', 'Eucgr.A01119' => 'egr', 'Eucgr.E04043' => 'egr', 'Eucgr.J00428' => 'egr', 'Eucgr.J00958' => 'egr', 'FAN11G3091' => 'fan', 'FAN11G3651' => 'fan', 'FAN16G2566' => 'fan', 'FAN21G3155' => 'fan', 'FAN21G3400' => 'fan', 'FAN21G3543' => 'fan', 'FAN25G0234' => 'fan', 'FAN25G1422' => 'fan', 'FAN25G3392' => 'fan', 'FvH4_3g01940' => 'fve', 'FvH4_3g29870' => 'fve', 'FvH4_3g33680' => 'fve', 'Glyma.09G004200' => 'gma', 'Glyma.11G151288' => 'gma', 'Glyma.11G189100' => 'gma', 'Glyma.12G072500' => 'gma', 'Glyma.12G085500' => 'gma', 'Glyma.12G181800' => 'gma', 'Glyma.12G193000' => 'gma', 'Glyma.13G309300' => 'gma', 'Glyma.13G319000' => 'gma', 'Glyma.17G012600' => 'gma', 'Gohir.A06G148600' => 'ghi', 'Gohir.A07G115800' => 'ghi', 'Gohir.A08G003600' => 'ghi', 'Gohir.A09G093300' => 'ghi', 'Gohir.A09G105400' => 'ghi', 'Gohir.A09G105500' => 'ghi', 'Gohir.D06G154600' => 'ghi', 'Gohir.D07G120200' => 'ghi', 'Gohir.D08G013900' => 'ghi', 'Gohir.D09G093100' => 'ghi', 'Gohir.D09G102200' => 'ghi', 'Gohir.D09G102300' => 'ghi', 'Gorai.001G129400' => 'gra', 'Gorai.004G008200' => 'gra', 'Gorai.006G109800' => 'gra', 'Gorai.006G119500' => 'gra', 'Gorai.006G121300' => 'gra', 'Gorai.010G180700' => 'gra', 'GSVIVG01012716001' => 'vvi', 'GSVIVG01025118001' => 'vvi', 'GSVIVG01030439001' => 'vvi', 'GSVIVG01031397001' => 'vvi', 'HanXRQChr01g0004201' => 'han', 'HanXRQChr02g0054941' => 'han', 'HanXRQChr05g0141811' => 'han', 'HanXRQChr07g0197751' => 'han', 'HanXRQChr11g0346691' => 'han', 'HanXRQChr13g0396971' => 'han', 'HanXRQChr14g0432951' => 'han', 'HanXRQChr14g0452001' => 'han', 'HanXRQChr15g0496681' => 'han', 'HanXRQChr17g0557491' => 'han', 'HanXRQChr17g0557501' => 'han', 'Haze_06809' => 'cav', 'Haze_12852' => 'cav', 'Haze_15850' => 'cav', 'Haze_23446' => 'cav', 'Haze_23942' => 'cav', 'Haze_23943' => 'cav', 'Hma1.2p1_0091F.1_g046450' => 'hma', 'Hma1.2p1_0128F.1_g059910' => 'hma', 'Hma1.2p1_0249F.1_g102260' => 'hma', 'Hma1.2p1_0453F.1_g156190' => 'hma', 'Hma1.2p1_0695F.1_g204380' => 'hma', 'Hma1.2p1_0749F.1_g212650' => 'hma', 'Hma1.2p1_2156F.1_g315420' => 'hma', 'Hma1.2p1_2686F.1_g326940' => 'hma', 'HPP92_006428' => 'vpl', 'HPP92_012069' => 'vpl', 'HPP92_014129' => 'vpl', 'HPP92_014133' => 'vpl', 'HPP92_017315' => 'vpl', 'HPP92_026445' => 'vpl', 'HPP92_026446' => 'vpl', 'Hund00774' => 'sun', 'Hund07682' => 'sun', 'Hund21413' => 'sun', 'Hund23462' => 'sun', 'Hund23463' => 'sun', 'Lalb_Chr03g0027911' => 'lal', 'Lalb_Chr13g0304271' => 'lal', 'Lalb_Chr19g0137471' => 'lal', 'Lalb_Chr22g0350651' => 'lal', 'Lalb_Chr24g0395151' => 'lal', 'Lj1A1231T40' => 'lonja', 'Lj1A221T48' => 'lonja', 'Lj1C924T12' => 'lonja', 'Lj2C993G6' => 'lonja', 'Lj3g0005790' => 'lja', 'Lj3g0015432' => 'lja', 'Lj3g0017722' => 'lja', 'Lj3g0018497' => 'lja', 'Lj4g0025071' => 'lja', 'Lsat_1_v5_gn_1_129680' => 'lsa', 'Lsat_1_v5_gn_2_25321' => 'lsa', 'Lsat_1_v5_gn_2_95461' => 'lsa', 'Lsat_1_v5_gn_4_159620' => 'lsa', 'Lsat_1_v5_gn_6_41301' => 'lsa', 'Lsat_1_v5_gn_6_74660' => 'lsa', 'Lsat_1_v5_gn_7_11520' => 'lsa', 'Lsat_1_v5_gn_9_67680' => 'lsa', 'Manes.04G008300' => 'mes', 'Manes.04G008400' => 'mes', 'Manes.04G026500' => 'mes', 'Manes.10G135300' => 'mes', 'Manes.11G157300' => 'mes', 'Manes.12G074000' => 'mes', 'Manes.16G006200' => 'mes', 'Manes.17G026400' => 'mes', 'Mapoly0024s0086' => 'mpo', 'Mapoly0024s0087' => 'mpo', 'Mapoly0071s0057' => 'mpo', 'Mapoly0204s0012' => 'mpo', 'MBI04_g37681_MAGBIO' => 'mbi', 'MBI05_g17779_MAGBIO' => 'mbi', 'MBI12_g31184_MAGBIO' => 'mbi', 'MBI17_g11083_MAGBIO' => 'mbi', 'MBI18_g03883_MAGBIO' => 'mbi', 'MBI18_g28940_MAGBIO' => 'mbi', 'MCO01G690' => 'mco', 'MD03G1109900' => 'mdo', 'MD03G1134800' => 'mdo', 'MD05G1348000' => 'mdo', 'MD10G1322400' => 'mdo', 'MD11G1123300' => 'mdo', 'MD11G1157600' => 'mdo', 'Medtr2g084875' => 'mtr', 'Medtr2g088130' => 'mtr', 'Medtr4g055310' => 'mtr', 'Medtr4g061070' => 'mtr', 'Medtr4g132250' => 'mtr', 'MELO3C004795.2' => 'cme', 'MELO3C004797.2' => 'cme', 'MELO3C007396.2' => 'cme', 'MELO3C019277.2' => 'cme', 'MELO3C021449.2' => 'cme', 'MELO3C025736.2' => 'cme', 'Migut.D02175' => 'egut', 'Migut.H01573' => 'egut', 'Migut.M01327' => 'egut', 'Migut.N02513' => 'egut', 'MSTRG.14638' => 'ama', 'MSTRG.18632' => 'ama', 'MSTRG.7203' => 'ama', 'Nitab4.5_0000533g0140' => 'nta', 'Nitab4.5_0000888g0150' => 'nta', 'Nitab4.5_0001453g0040' => 'nta', 'Nitab4.5_0002827g0090' => 'nta', 'Nitab4.5_0003082g0040' => 'nta', 'Nitab4.5_0007799g0040' => 'nta', 'Nitab4.5_0008983g0010' => 'nta', 'Nitab4.5_0009017g0020' => 'nta', 'Nn1g02132' => 'nnu', 'Nn1g03492' => 'nnu', 'Nn1g03493' => 'nnu', 'Nn1g03494' => 'nnu', 'Nn1g07164' => 'nnu', 'Nn1g07291' => 'nnu', 'Nn2g10655' => 'nnu', 'Nn2g11652' => 'nnu', 'Nn2g14008' => 'nnu', 'Nn3g17476' => 'nnu', 'Nn3g17477' => 'nnu', 'Nn4g22370' => 'nnu', 'Nn4g25255' => 'nnu', 'Nn5g27755' => 'nnu', 'Nn6g34260' => 'nnu', 'Nn6g35041' => 'nnu', 'Oeu005924.1' => 'oeu', 'Oeu008383.1' => 'oeu', 'Oeu014928.1' => 'oeu', 'Oeu019889.1' => 'oeu', 'Oeu022271.1' => 'oeu', 'Oeu025271.1' => 'oeu', 'Oeu036302.1' => 'oeu', 'Oeu044100.1' => 'oeu', 'Os01g0528300' => 'osa', 'Os03g0286200' => 'osa', 'Os04g0406600' => 'osa', 'Os07g0512000' => 'osa', 'Os07g0694600' => 'osa', 'Os08g0411000' => 'osa', 'Os09g0565700' => 'osa', 'Os09g0566050' => 'osa', 'Os10g0523700' => 'osa', 'Peaxi162Scf00002g00514' => 'pax', 'Peaxi162Scf00047g01817' => 'pax', 'Peaxi162Scf00114g00001' => 'pax', 'Peaxi162Scf00147g00613' => 'pax', 'Peaxi162Scf00389g00425' => 'pax', 'PGR042G1139' => 'pgr', 'PGR042G3273' => 'pgr', 'PGR102G2180' => 'pgr', 'PGR119G0234' => 'pgr', 'PGR119G0668' => 'pgr', 'PGSC0003DMG400007122' => 'stu', 'PGSC0003DMG400016478' => 'stu', 'PGSC0003DMG400025374' => 'stu', 'PGSC0003DMG400026536' => 'stu', 'Phvul.003G079600' => 'pvu', 'Phvul.005G115600' => 'pvu', 'Phvul.005G127100' => 'pvu', 'Phvul.006G149500' => 'pvu', 'Phvul.006G149600' => 'pvu', 'Phvul.011G071800' => 'pvu', 'Phvul.011G090400' => 'pvu', 'Potri.004G013400' => 'ptr', 'Potri.004G188100' => 'ptr', 'Potri.008G195500' => 'ptr', 'Potri.009G148800' => 'ptr', 'Potri.011G004700' => 'ptr', 'Pp3c17_22810' => 'ppa', 'Pp3c18_4480' => 'ppa', 'Pp3c19_13030' => 'ppa', 'Pp3c1_33620' => 'ppa', 'Pp3c2_9380' => 'ppa', 'PRCOL_00001023' => 'pco', 'Prupe.3G216300' => 'ppe', 'Prupe.4G019500' => 'ppe', 'Prupe.6G092500' => 'ppe', 'Prupe.6G119200' => 'ppe', 'Psat0s1945g0080' => 'psa', 'Psat0s4167g0040' => 'psa', 'Psat1g185800' => 'psa', 'Psat4g006440' => 'psa', 'Psat4g006480' => 'psa', 'Psat4g168120' => 'psa', 'Psat5g255680' => 'psa', 'Psat5g261760' => 'psa', 'Psat7g222120' => 'psa', 'PSO063G7252' => 'pso', 'PSO170G4778' => 'pso', 'PSO210G2249' => 'pso', 'PSO339G2411' => 'pso', 'PSO339G2457' => 'pso', 'PSO339G2854' => 'pso', 'PSO339G4288' => 'pso', 'PSO339G4615' => 'pso', 'PSO384G2796' => 'pso', 'PSO384G2940' => 'pso', 'PSO384G4227' => 'pso', 'PSO478G1425' => 'pso', 'PSO541G3863' => 'pso', 'PSO675G0507' => 'pso', 'PSO782G0338' => 'pso', 'PSO832G0644' => 'pso', 'QL01p013664' => 'qlo', 'QL01p036598' => 'qlo', 'QL05p072984' => 'qlo', 'QL08p005768' => 'qlo', 'QL08p032743' => 'qlo', 'QL93p0073_0439' => 'qlo', 'QL93p0073_0444' => 'qlo', 'RcHm_v2.0_Chr5g0002851' => 'rch', 'RcHm_v2.0_Chr5g0055201' => 'rch', 'RcHm_v2.0_Chr5g0061191' => 'rch', 'RcHm_v2.0_Chr7g0203231' => 'rch', 'Rhsim01G0208100' => 'rsi', 'Rhsim01G0208200' => 'rsi', 'Rhsim02G0106500' => 'rsi', 'Rhsim03G0107900' => 'rsi', 'Rhsim06G0163400' => 'rsi', 'Rhsim13G0105200' => 'rsi', 'Sabra04G0006300' => 'sbr', 'Sabra04G0127000' => 'sbr', 'Sabra08G0148700' => 'sbr', 'Sabra09G0117400' => 'sbr', 'SalBow1G3326' => 'sbo', 'SalBow3G3228' => 'sbo', 'SalBow6G1634' => 'sbo', 'SalBow6G3603' => 'sbo', 'SalBow6G5266' => 'sbo', 'SalBow7G2265' => 'sbo', 'SalBow8G0850' => 'sbo', 'SalBow8G2592' => 'sbo', 'Sc05g0009240' => 'sci', 'Sc12g0002300' => 'sci', 'Sc21g0000100' => 'sci', 'Sc21g0004720' => 'sci', 'Sed0002949' => 'sed', 'Sed0004114' => 'sed', 'Sed0004306' => 'sed', 'Sed0006172' => 'sed', 'Sed0008413' => 'sed', 'Sed0013809' => 'sed', 'Sed0019556' => 'sed', 'SEGI_03570' => 'sgi', 'SEGI_07859' => 'sgi', 'SEGI_15042' => 'sgi', 'SEGI_16263' => 'sgi', 'SEGI_16552' => 'sgi', 'SEGI_24331' => 'sgi', 'SEGI_27316' => 'sgi', 'SEGI_29521' => 'sgi', 'SEGI_41342' => 'sgi', 'SGA_v2.0_scaffold27G11617' => 'sas', 'SGA_v2.0_scaffold316G48428' => 'sas', 'SGA_v2.0_scaffold49G18261' => 'sas', 'SGA_v2.0_scaffold7G03831' => 'sas', 'SGA_v2.0_scaffold93G28359' => 'sas', 'SHI02210' => 'shi', 'SHI06028' => 'shi', 'SHI06321' => 'shi', 'SMO111G0012' => 'smo', 'SMO228G0080' => 'smo', 'SMO356G0756' => 'smo', 'Solyc02g080620.3' => 'sly', 'Solyc06g074530.1' => 'sly', 'Solyc11g066890.1' => 'sly', 'Solyc11g072520.3' => 'sly', 'Sopen02g025330' => 'spe', 'Sopen06g031000' => 'spe', 'Sopen09g008240' => 'spe', 'Sopen09g025210' => 'spe', 'Sopen11g026600' => 'spe', 'Sopen11g030170' => 'spe', 'Sp1g10420' => 'spa', 'Sp3g06570' => 'spa', 'Sp4g10660' => 'spa', 'Sp5g16460' => 'spa', 'Sp6g22710' => 'spa', 'TAR365G0112' => 'tar', 'TAR369G0717' => 'tar', 'TAR374G0976' => 'tar', 'TAR623G1128' => 'tar', 'TAR626G1937' => 'tar', 'TAR627G0123' => 'tar', 'TAR628G0305' => 'tar', 'TAR636G1176' => 'tar', 'TAR636G2442' => 'tar', 'THA.LOC104800556' => 'tha', 'THA.LOC104809501' => 'tha', 'THA.LOC104815126' => 'tha', 'THA.LOC104815732' => 'tha', 'THA.LOC104823528' => 'tha', 'Thecc.02G365600' => 'tca', 'Thecc.06G222300' => 'tca', 'Thecc.09G261800' => 'tca', 'Thecc.09G291400' => 'tca', 'Thhalv10003028m.g' => 'esa', 'Thhalv10007886m.g' => 'esa', 'Thhalv10016085m.g' => 'esa', 'Thhalv10016681m.g' => 'esa', 'Thhalv10020951m.g' => 'esa', 'TPR.G15598' => 'tpr', 'TPR.G29305' => 'tpr', 'TPR.G32395' => 'tpr', 'TPR.G36998' => 'tpr', 'TPR.G4227' => 'tpr', 'TWI18G1433' => 'twi', 'TWI31G0755' => 'twi', 'TWI38G0912' => 'twi', 'TWI75G1097' => 'twi', 'TWI75G1619' => 'twi', 'TWI79G1336' => 'twi', 'unitig_0.g943' => 'ugi', 'unitig_0.g944' => 'ugi', 'unitig_22.g6646' => 'ugi', 'unitig_37.g12681' => 'ugi', 'unitig_8.g3290' => 'ugi', 'vmacro03278' => 'vma', 'vmacro12197' => 'vma', 'vmacro14478' => 'vma', 'vmacro15787' => 'vma', 'vmacro15789' => 'vma', 'vmacro15790' => 'vma', 'vmacro15806' => 'vma', 'vmacro22907' => 'vma', 'vmacro22908' => 'vma', 'vmacro22909' => 'vma', 'vmacro23108' => 'vma', 'VMungo0540G0540' => 'vmu', 'VMungo0540G2468' => 'vmu', 'VMungo1080G0390' => 'vmu', 'VMungo1080G1165' => 'vmu', 'VMungo1127G0170' => 'vmu', 'VMungo1127G2099' => 'vmu', 'VMungo1215G3013' => 'vmu', 'Zm00001eb013110' => 'zma', 'Zm00001eb084260' => 'zma', 'Zm00001eb096110' => 'zma', 'Zm00001eb217510' => 'zma', 'Zm00001eb322550' => 'zma', 'Zm00001eb390770' => 'zma', 'Zm00001eb397170' => 'zma', 'Zm00001eb404610' => 'zma', 'Zm00001eb421790' => 'zma' ), 'gf_id' => 'HOM05D000911', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000911' ), 'data_identifier' => 'HOM05D000911', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000911', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27780' => 'bna', 'A03p35380' => 'bna', 'A04p21160' => 'bna', 'A05p40570' => 'bna', 'A06p26900' => 'bna', 'A08p33230' => 'bna', 'A09p65960' => 'bna', 'A10p18290' => 'bna', 'Aa31LG1G12990' => 'aar', 'Aa31LG1G2980' => 'aar', 'Aa31LG4G14320' => 'aar', 'Aa31LG7G11800' => 'aar', 'Aa31sc36G50' => 'aar', 'Aa31sc36G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3721' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5459' => 'aag', 'Actinidia03028' => 'ach', 'Actinidia03753' => 'ach', 'Actinidia04187' => 'ach', 'Actinidia05509' => 'ach', 'Actinidia24180' => 'ach', 'Actinidia26906' => 'ach', 'Actinidia37097' => 'ach', 'Actinidia38249' => 'ach', 'Ah.01g003470' => 'amhyb', 'Ah.01g004580' => 'amhyb', 'Ah.01g014850' => 'amhyb', 'Ah.01g016830' => 'amhyb', 'Ah.14g088000' => 'amhyb', 'AL1G22980' => 'aly', 'AL3G18990' => 'aly', 'AL4G22440' => 'aly', 'AL4G33180' => 'aly', 'AL5G22920' => 'aly', 'AL6G33660' => 'aly', 'AL8G20720' => 'aly', 'Aqoxy1G00935' => 'aox', 'Aqoxy1G02094' => 'aox', 'Aqoxy2G01239' => 'aox', 'Aqoxy4G01870' => 'aox', 'Aqoxy7G00450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.36ZVTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71EM27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5D6C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH3WRE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3NCM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RIM768' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YB5YRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z36GDV' => 'arhy', 'AT1G08250' => 'ath', 'AT1G11790' => 'ath', 'AT2G27820' => 'ath', 'AT3G07630' => 'ath', 'AT3G44720' => 'ath', 'AT5G22630' => 'ath', 'ATR0693G304' => 'atr', 'ATR0794G109' => 'atr', 'ATR0820G120' => 'atr', 'ATR1159G064' => 'atr', 'Atru.chr10.2239' => 'acertr', 'Atru.chr3.3371' => 'acertr', 'Atru.chr6.3202' => 'acertr', 'AUR62006499' => 'cqu', 'AUR62012718' => 'cqu', 'AUR62021938' => 'cqu', 'AUR62023932' => 'cqu', 'AUR62025034' => 'cqu', 'AUR62025035' => 'cqu', 'AUR62038307' => 'cqu', 'AUR62043466' => 'cqu', 'BcaB02g10748' => 'bca', 'BcaB03g13231' => 'bca', 'BcaB03g14689' => 'bca', 'BcaB05g22716' => 'bca', 'BcaB06g28172' => 'bca', 'BcaB08g36413' => 'bca', 'BcaC01g02186' => 'bca', 'BcaC01g04272' => 'bca', 'BcaC02g08080' => 'bca', 'BcaC02g08227' => 'bca', 'BcaC03g13901' => 'bca', 'BcaC04g19593' => 'bca', 'BcaC04g20874' => 'bca', 'BcaC05g29557' => 'bca', 'BcaC06g35505' => 'bca', 'BcaC07g41954' => 'bca', 'BcaC07g41955' => 'bca', 'BcaC07g41956' => 'bca', 'BcaC07g42519' => 'bca', 'BcaC07g42520' => 'bca', 'BcaC07g42523' => 'bca', 'BcaC07g42524' => 'bca', 'BcaC07g42525' => 'bca', 'BcaC08g47480' => 'bca', 'BcaC08g47481' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00530' => 'bna', 'BolC2t07178H' => 'bol', 'BolC3t16567H' => 'bol', 'BolC4t27234H' => 'bol', 'BolC5t29728H' => 'bol', 'BolC5t34622H' => 'bol', 'BolC6t40321H' => 'bol', 'BolC7t42028H' => 'bol', 'BolC8t49125H' => 'bol', 'BolC8t52538H' => 'bol', 'BolC8t52539H' => 'bol', 'BolC9t56681H' => 'bol', 'BolC9t58266H' => 'bol', 'BolSC21t60294H' => 'bol', 'BraA02t05670Z' => 'bra', 'BraA03t12716Z' => 'bra', 'BraA04t17685Z' => 'bra', 'BraA05t22788Z' => 'bra', 'BraA06t24032Z' => 'bra', 'BraA06t25625Z' => 'bra', 'BraA07t27930Z' => 'bra', 'BraA08t35242Z' => 'bra', 'BraA09t38609Z' => 'bra', 'BraA10t43905Z' => 'bra', 'C02p11060' => 'bna', 'C03p42990' => 'bna', 'C03p67310' => 'bna', 'C04p56990' => 'bna', 'C04p58660' => 'bna', 'C05p09890' => 'bna', 'C05p59680' => 'bna', 'C06p19830' => 'bna', 'C06p53040' => 'bna', 'C07p15230' => 'bna', 'C08p50070' => 'bna', 'C08p50090' => 'bna', 'C09p38330' => 'bna', 'C09p53940' => 'bna', 'CAN.G1014.1' => 'can', 'CAN.G644.30' => 'can', 'CAN.G84.47' => 'can', 'CAN.G919.8' => 'can', 'CANSAT54G0113' => 'cansat', 'CANSAT54G1286' => 'cansat', 'CANSAT64G1020' => 'cansat', 'CARHR008080' => 'chi', 'CARHR008090' => 'chi', 'CARHR012130' => 'chi', 'CARHR038390' => 'chi', 'CARHR082330' => 'chi', 'CARHR120520' => 'chi', 'CARHR151470' => 'chi', 'CARHR190950' => 'chi', 'Carub.0001s0760' => 'cru', 'Carub.0001s1146' => 'cru', 'Carub.0003s0721' => 'cru', 'Carub.0004s0858' => 'cru', 'Carub.0005s1040' => 'cru', 'Carub.0006s2035' => 'cru', 'Carub.0015s0005' => 'cru', 'Ca_01607_v3' => 'car', 'Ca_01677_v3' => 'car', 'Ca_06087_v3' => 'car', 'Ca_19238_v3' => 'car', 'Ca_19373_v3' => 'car', 'Ca_21079_v3' => 'car', 'CBR_g54016' => 'cbr', 'CBR_g54018' => 'cbr', 'CBR_g54020' => 'cbr', 'Cc01_g09780' => 'ccan', 'Cc01_g11680' => 'ccan', 'Cc02_g15610' => 'ccan', 'Cc05_g04350' => 'ccan', 'Cc09_g01580' => 'ccan', 'CDE01G0795' => 'cde', 'CDE02G2024' => 'cde', 'CDE02G2260' => 'cde', 'CDE02G4561' => 'cde', 'CDE05G2733' => 'cde', 'CDE05G3422' => 'cde', 'CDE06G2003' => 'cde', 'CDE08G0576' => 'cde', 'CDE09G0048' => 'cde', 'CDE11G0805' => 'cde', 'Cfa003644' => 'cfa', 'Cfa006290' => 'cfa', 'Cfa010080' => 'cfa', 'Cfa011376' => 'cfa', 'Cfa011576' => 'cfa', 'Cfa011577' => 'cfa', 'Cfa014389' => 'cfa', 'Ciclev10006044m.g' => 'ccl', 'Ciclev10006954m.g' => 'ccl', 'Ciclev10015131m.g' => 'ccl', 'Ciclev10015580m.g' => 'ccl', 'Ciclev10028359m.g' => 'ccl', 'Ciclev10028573m.g' => 'ccl', 'CiPaw.03G159300' => 'cil', 'CiPaw.04G115100' => 'cil', 'CiPaw.09G092800' => 'cil', 'CiPaw.10G071800' => 'cil', 'CiPaw.13G105800' => 'cil', 'CiPaw.13G141000' => 'cil', 'CiPaw.14G103400' => 'cil', 'ClCG01G012700' => 'cla', 'ClCG01G012720' => 'cla', 'ClCG01G021920' => 'cla', 'ClCG02G008870' => 'cla', 'ClCG02G020840' => 'cla', 'ClCG02G021930' => 'cla', 'COL.COLO4_19302' => 'col', 'COL.COLO4_25262' => 'col', 'COL.COLO4_31788' => 'col', 'Cpa.g.c34684' => 'cpa', 'Cpa.g.c36520.1' => 'cpa', 'Cpa.g.c45626' => 'cpa', 'Cpa.g.sc121.17' => 'cpa', 'Cpa.g.sc13.22' => 'cpa', 'Cpa.g.sc87.88' => 'cpa', 'Cre06.g261800' => 'cre', 'CsaV3_1G014500' => 'csa', 'CsaV3_1G014510' => 'csa', 'CsaV3_2G034880' => 'csa', 'CsaV3_6G014760' => 'csa', 'CsaV3_6G021500' => 'csa', 'CsaV3_6G048980' => 'csa', 'CSS0002511' => 'camsi', 'CSS0007556' => 'camsi', 'CSS0008532' => 'camsi', 'CSS0009709' => 'camsi', 'CSS0010486' => 'camsi', 'CSS0016768' => 'camsi', 'CSS0023512' => 'camsi', 'CSS0025341' => 'camsi', 'CSS0027999' => 'camsi', 'CSS0028944' => 'camsi', 'CSS0032292' => 'camsi', 'CSS0032464' => 'camsi', 'CSS0037153' => 'camsi', 'CSS0039256' => 'camsi', 'CSS0048392' => 'camsi', 'CSS0050458' => 'camsi', 'DCAR_004224' => 'dca', 'DCAR_006147' => 'dca', 'DCAR_006465' => 'dca', 'DCAR_008159' => 'dca', 'DCAR_012164' => 'dca', 'DCAR_019764' => 'dca', 'Dinv05418' => 'din', 'Dinv10839' => 'din', 'Dinv12521' => 'din', 'Dinv13900' => 'din', 'Dinv29426' => 'din', 'Duzib150G0263' => 'dzi', 'Duzib168G1178' => 'dzi', 'Duzib168G1924' => 'dzi', 'Duzib170G0299' => 'dzi', 'Duzib170G0813' => 'dzi', 'Duzib235G1128' => 'dzi', 'Duzib248G1060' => 'dzi', 'ECA232G1910' => 'eca', 'ECA233G4621' => 'eca', 'ECA238G1216' => 'eca', 'ECA238G1784' => 'eca', 'ECA248G1242' => 'eca', 'EL10Ac8g20071' => 'bvu', 'EL10Ac9g21086' => 'bvu', 'EL10Ac9g22407' => 'bvu', 'EL10Ac9g22412' => 'bvu', 'Eucgr.A01119' => 'egr', 'Eucgr.E04043' => 'egr', 'Eucgr.J00428' => 'egr', 'Eucgr.J00958' => 'egr', 'FAN11G3091' => 'fan', 'FAN11G3651' => 'fan', 'FAN16G2566' => 'fan', 'FAN21G3155' => 'fan', 'FAN21G3400' => 'fan', 'FAN21G3543' => 'fan', 'FAN25G0234' => 'fan', 'FAN25G1422' => 'fan', 'FAN25G3392' => 'fan', 'FvH4_3g01940' => 'fve', 'FvH4_3g29870' => 'fve', 'FvH4_3g33680' => 'fve', 'Glyma.09G004200' => 'gma', 'Glyma.11G151288' => 'gma', 'Glyma.11G189100' => 'gma', 'Glyma.12G072500' => 'gma', 'Glyma.12G085500' => 'gma', 'Glyma.12G181800' => 'gma', 'Glyma.12G193000' => 'gma', 'Glyma.13G309300' => 'gma', 'Glyma.13G319000' => 'gma', 'Glyma.17G012600' => 'gma', 'Gohir.A06G148600' => 'ghi', 'Gohir.A07G115800' => 'ghi', 'Gohir.A08G003600' => 'ghi', 'Gohir.A09G093300' => 'ghi', 'Gohir.A09G105400' => 'ghi', 'Gohir.A09G105500' => 'ghi', 'Gohir.D06G154600' => 'ghi', 'Gohir.D07G120200' => 'ghi', 'Gohir.D08G013900' => 'ghi', 'Gohir.D09G093100' => 'ghi', 'Gohir.D09G102200' => 'ghi', 'Gohir.D09G102300' => 'ghi', 'Gorai.001G129400' => 'gra', 'Gorai.004G008200' => 'gra', 'Gorai.006G109800' => 'gra', 'Gorai.006G119500' => 'gra', 'Gorai.006G121300' => 'gra', 'Gorai.010G180700' => 'gra', 'GSVIVG01012716001' => 'vvi', 'GSVIVG01025118001' => 'vvi', 'GSVIVG01030439001' => 'vvi', 'GSVIVG01031397001' => 'vvi', 'HanXRQChr01g0004201' => 'han', 'HanXRQChr02g0054941' => 'han', 'HanXRQChr05g0141811' => 'han', 'HanXRQChr07g0197751' => 'han', 'HanXRQChr11g0346691' => 'han', 'HanXRQChr13g0396971' => 'han', 'HanXRQChr14g0432951' => 'han', 'HanXRQChr14g0452001' => 'han', 'HanXRQChr15g0496681' => 'han', 'HanXRQChr17g0557491' => 'han', 'HanXRQChr17g0557501' => 'han', 'Haze_06809' => 'cav', 'Haze_12852' => 'cav', 'Haze_15850' => 'cav', 'Haze_23446' => 'cav', 'Haze_23942' => 'cav', 'Haze_23943' => 'cav', 'Hma1.2p1_0091F.1_g046450' => 'hma', 'Hma1.2p1_0128F.1_g059910' => 'hma', 'Hma1.2p1_0249F.1_g102260' => 'hma', 'Hma1.2p1_0453F.1_g156190' => 'hma', 'Hma1.2p1_0695F.1_g204380' => 'hma', 'Hma1.2p1_0749F.1_g212650' => 'hma', 'Hma1.2p1_2156F.1_g315420' => 'hma', 'Hma1.2p1_2686F.1_g326940' => 'hma', 'HPP92_006428' => 'vpl', 'HPP92_012069' => 'vpl', 'HPP92_014129' => 'vpl', 'HPP92_014133' => 'vpl', 'HPP92_017315' => 'vpl', 'HPP92_026445' => 'vpl', 'HPP92_026446' => 'vpl', 'Hund00774' => 'sun', 'Hund07682' => 'sun', 'Hund21413' => 'sun', 'Hund23462' => 'sun', 'Hund23463' => 'sun', 'Lalb_Chr03g0027911' => 'lal', 'Lalb_Chr13g0304271' => 'lal', 'Lalb_Chr19g0137471' => 'lal', 'Lalb_Chr22g0350651' => 'lal', 'Lalb_Chr24g0395151' => 'lal', 'Lj1A1231T40' => 'lonja', 'Lj1A221T48' => 'lonja', 'Lj1C924T12' => 'lonja', 'Lj2C993G6' => 'lonja', 'Lj3g0005790' => 'lja', 'Lj3g0015432' => 'lja', 'Lj3g0017722' => 'lja', 'Lj3g0018497' => 'lja', 'Lj4g0025071' => 'lja', 'Lsat_1_v5_gn_1_129680' => 'lsa', 'Lsat_1_v5_gn_2_25321' => 'lsa', 'Lsat_1_v5_gn_2_95461' => 'lsa', 'Lsat_1_v5_gn_4_159620' => 'lsa', 'Lsat_1_v5_gn_6_41301' => 'lsa', 'Lsat_1_v5_gn_6_74660' => 'lsa', 'Lsat_1_v5_gn_7_11520' => 'lsa', 'Lsat_1_v5_gn_9_67680' => 'lsa', 'Manes.04G008300' => 'mes', 'Manes.04G008400' => 'mes', 'Manes.04G026500' => 'mes', 'Manes.10G135300' => 'mes', 'Manes.11G157300' => 'mes', 'Manes.12G074000' => 'mes', 'Manes.16G006200' => 'mes', 'Manes.17G026400' => 'mes', 'Mapoly0024s0086' => 'mpo', 'Mapoly0024s0087' => 'mpo', 'Mapoly0071s0057' => 'mpo', 'Mapoly0204s0012' => 'mpo', 'MBI04_g37681_MAGBIO' => 'mbi', 'MBI05_g17779_MAGBIO' => 'mbi', 'MBI12_g31184_MAGBIO' => 'mbi', 'MBI17_g11083_MAGBIO' => 'mbi', 'MBI18_g03883_MAGBIO' => 'mbi', 'MBI18_g28940_MAGBIO' => 'mbi', 'MCO01G690' => 'mco', 'MD03G1109900' => 'mdo', 'MD03G1134800' => 'mdo', 'MD05G1348000' => 'mdo', 'MD10G1322400' => 'mdo', 'MD11G1123300' => 'mdo', 'MD11G1157600' => 'mdo', 'Medtr2g084875' => 'mtr', 'Medtr2g088130' => 'mtr', 'Medtr4g055310' => 'mtr', 'Medtr4g061070' => 'mtr', 'Medtr4g132250' => 'mtr', 'MELO3C004795.2' => 'cme', 'MELO3C004797.2' => 'cme', 'MELO3C007396.2' => 'cme', 'MELO3C019277.2' => 'cme', 'MELO3C021449.2' => 'cme', 'MELO3C025736.2' => 'cme', 'Migut.D02175' => 'egut', 'Migut.H01573' => 'egut', 'Migut.M01327' => 'egut', 'Migut.N02513' => 'egut', 'MSTRG.14638' => 'ama', 'MSTRG.18632' => 'ama', 'MSTRG.7203' => 'ama', 'Nitab4.5_0000533g0140' => 'nta', 'Nitab4.5_0000888g0150' => 'nta', 'Nitab4.5_0001453g0040' => 'nta', 'Nitab4.5_0002827g0090' => 'nta', 'Nitab4.5_0003082g0040' => 'nta', 'Nitab4.5_0007799g0040' => 'nta', 'Nitab4.5_0008983g0010' => 'nta', 'Nitab4.5_0009017g0020' => 'nta', 'Nn1g02132' => 'nnu', 'Nn1g03492' => 'nnu', 'Nn1g03493' => 'nnu', 'Nn1g03494' => 'nnu', 'Nn1g07164' => 'nnu', 'Nn1g07291' => 'nnu', 'Nn2g10655' => 'nnu', 'Nn2g11652' => 'nnu', 'Nn2g14008' => 'nnu', 'Nn3g17476' => 'nnu', 'Nn3g17477' => 'nnu', 'Nn4g22370' => 'nnu', 'Nn4g25255' => 'nnu', 'Nn5g27755' => 'nnu', 'Nn6g34260' => 'nnu', 'Nn6g35041' => 'nnu', 'Oeu005924.1' => 'oeu', 'Oeu008383.1' => 'oeu', 'Oeu014928.1' => 'oeu', 'Oeu019889.1' => 'oeu', 'Oeu022271.1' => 'oeu', 'Oeu025271.1' => 'oeu', 'Oeu036302.1' => 'oeu', 'Oeu044100.1' => 'oeu', 'Os01g0528300' => 'osa', 'Os03g0286200' => 'osa', 'Os04g0406600' => 'osa', 'Os07g0512000' => 'osa', 'Os07g0694600' => 'osa', 'Os08g0411000' => 'osa', 'Os09g0565700' => 'osa', 'Os09g0566050' => 'osa', 'Os10g0523700' => 'osa', 'Peaxi162Scf00002g00514' => 'pax', 'Peaxi162Scf00047g01817' => 'pax', 'Peaxi162Scf00114g00001' => 'pax', 'Peaxi162Scf00147g00613' => 'pax', 'Peaxi162Scf00389g00425' => 'pax', 'PGR042G1139' => 'pgr', 'PGR042G3273' => 'pgr', 'PGR102G2180' => 'pgr', 'PGR119G0234' => 'pgr', 'PGR119G0668' => 'pgr', 'PGSC0003DMG400007122' => 'stu', 'PGSC0003DMG400016478' => 'stu', 'PGSC0003DMG400025374' => 'stu', 'PGSC0003DMG400026536' => 'stu', 'Phvul.003G079600' => 'pvu', 'Phvul.005G115600' => 'pvu', 'Phvul.005G127100' => 'pvu', 'Phvul.006G149500' => 'pvu', 'Phvul.006G149600' => 'pvu', 'Phvul.011G071800' => 'pvu', 'Phvul.011G090400' => 'pvu', 'Potri.004G013400' => 'ptr', 'Potri.004G188100' => 'ptr', 'Potri.008G195500' => 'ptr', 'Potri.009G148800' => 'ptr', 'Potri.011G004700' => 'ptr', 'Pp3c17_22810' => 'ppa', 'Pp3c18_4480' => 'ppa', 'Pp3c19_13030' => 'ppa', 'Pp3c1_33620' => 'ppa', 'Pp3c2_9380' => 'ppa', 'PRCOL_00001023' => 'pco', 'Prupe.3G216300' => 'ppe', 'Prupe.4G019500' => 'ppe', 'Prupe.6G092500' => 'ppe', 'Prupe.6G119200' => 'ppe', 'Psat0s1945g0080' => 'psa', 'Psat0s4167g0040' => 'psa', 'Psat1g185800' => 'psa', 'Psat4g006440' => 'psa', 'Psat4g006480' => 'psa', 'Psat4g168120' => 'psa', 'Psat5g255680' => 'psa', 'Psat5g261760' => 'psa', 'Psat7g222120' => 'psa', 'PSO063G7252' => 'pso', 'PSO170G4778' => 'pso', 'PSO210G2249' => 'pso', 'PSO339G2411' => 'pso', 'PSO339G2457' => 'pso', 'PSO339G2854' => 'pso', 'PSO339G4288' => 'pso', 'PSO339G4615' => 'pso', 'PSO384G2796' => 'pso', 'PSO384G2940' => 'pso', 'PSO384G4227' => 'pso', 'PSO478G1425' => 'pso', 'PSO541G3863' => 'pso', 'PSO675G0507' => 'pso', 'PSO782G0338' => 'pso', 'PSO832G0644' => 'pso', 'QL01p013664' => 'qlo', 'QL01p036598' => 'qlo', 'QL05p072984' => 'qlo', 'QL08p005768' => 'qlo', 'QL08p032743' => 'qlo', 'QL93p0073_0439' => 'qlo', 'QL93p0073_0444' => 'qlo', 'RcHm_v2.0_Chr5g0002851' => 'rch', 'RcHm_v2.0_Chr5g0055201' => 'rch', 'RcHm_v2.0_Chr5g0061191' => 'rch', 'RcHm_v2.0_Chr7g0203231' => 'rch', 'Rhsim01G0208100' => 'rsi', 'Rhsim01G0208200' => 'rsi', 'Rhsim02G0106500' => 'rsi', 'Rhsim03G0107900' => 'rsi', 'Rhsim06G0163400' => 'rsi', 'Rhsim13G0105200' => 'rsi', 'Sabra04G0006300' => 'sbr', 'Sabra04G0127000' => 'sbr', 'Sabra08G0148700' => 'sbr', 'Sabra09G0117400' => 'sbr', 'SalBow1G3326' => 'sbo', 'SalBow3G3228' => 'sbo', 'SalBow6G1634' => 'sbo', 'SalBow6G3603' => 'sbo', 'SalBow6G5266' => 'sbo', 'SalBow7G2265' => 'sbo', 'SalBow8G0850' => 'sbo', 'SalBow8G2592' => 'sbo', 'Sc05g0009240' => 'sci', 'Sc12g0002300' => 'sci', 'Sc21g0000100' => 'sci', 'Sc21g0004720' => 'sci', 'Sed0002949' => 'sed', 'Sed0004114' => 'sed', 'Sed0004306' => 'sed', 'Sed0006172' => 'sed', 'Sed0008413' => 'sed', 'Sed0013809' => 'sed', 'Sed0019556' => 'sed', 'SEGI_03570' => 'sgi', 'SEGI_07859' => 'sgi', 'SEGI_15042' => 'sgi', 'SEGI_16263' => 'sgi', 'SEGI_16552' => 'sgi', 'SEGI_24331' => 'sgi', 'SEGI_27316' => 'sgi', 'SEGI_29521' => 'sgi', 'SEGI_41342' => 'sgi', 'SGA_v2.0_scaffold27G11617' => 'sas', 'SGA_v2.0_scaffold316G48428' => 'sas', 'SGA_v2.0_scaffold49G18261' => 'sas', 'SGA_v2.0_scaffold7G03831' => 'sas', 'SGA_v2.0_scaffold93G28359' => 'sas', 'SHI02210' => 'shi', 'SHI06028' => 'shi', 'SHI06321' => 'shi', 'SMO111G0012' => 'smo', 'SMO228G0080' => 'smo', 'SMO356G0756' => 'smo', 'Solyc02g080620.3' => 'sly', 'Solyc06g074530.1' => 'sly', 'Solyc11g066890.1' => 'sly', 'Solyc11g072520.3' => 'sly', 'Sopen02g025330' => 'spe', 'Sopen06g031000' => 'spe', 'Sopen09g008240' => 'spe', 'Sopen09g025210' => 'spe', 'Sopen11g026600' => 'spe', 'Sopen11g030170' => 'spe', 'Sp1g10420' => 'spa', 'Sp3g06570' => 'spa', 'Sp4g10660' => 'spa', 'Sp5g16460' => 'spa', 'Sp6g22710' => 'spa', 'TAR365G0112' => 'tar', 'TAR369G0717' => 'tar', 'TAR374G0976' => 'tar', 'TAR623G1128' => 'tar', 'TAR626G1937' => 'tar', 'TAR627G0123' => 'tar', 'TAR628G0305' => 'tar', 'TAR636G1176' => 'tar', 'TAR636G2442' => 'tar', 'THA.LOC104800556' => 'tha', 'THA.LOC104809501' => 'tha', 'THA.LOC104815126' => 'tha', 'THA.LOC104815732' => 'tha', 'THA.LOC104823528' => 'tha', 'Thecc.02G365600' => 'tca', 'Thecc.06G222300' => 'tca', 'Thecc.09G261800' => 'tca', 'Thecc.09G291400' => 'tca', 'Thhalv10003028m.g' => 'esa', 'Thhalv10007886m.g' => 'esa', 'Thhalv10016085m.g' => 'esa', 'Thhalv10016681m.g' => 'esa', 'Thhalv10020951m.g' => 'esa', 'TPR.G15598' => 'tpr', 'TPR.G29305' => 'tpr', 'TPR.G32395' => 'tpr', 'TPR.G36998' => 'tpr', 'TPR.G4227' => 'tpr', 'TWI18G1433' => 'twi', 'TWI31G0755' => 'twi', 'TWI38G0912' => 'twi', 'TWI75G1097' => 'twi', 'TWI75G1619' => 'twi', 'TWI79G1336' => 'twi', 'unitig_0.g943' => 'ugi', 'unitig_0.g944' => 'ugi', 'unitig_22.g6646' => 'ugi', 'unitig_37.g12681' => 'ugi', 'unitig_8.g3290' => 'ugi', 'vmacro03278' => 'vma', 'vmacro12197' => 'vma', 'vmacro14478' => 'vma', 'vmacro15787' => 'vma', 'vmacro15789' => 'vma', 'vmacro15790' => 'vma', 'vmacro15806' => 'vma', 'vmacro22907' => 'vma', 'vmacro22908' => 'vma', 'vmacro22909' => 'vma', 'vmacro23108' => 'vma', 'VMungo0540G0540' => 'vmu', 'VMungo0540G2468' => 'vmu', 'VMungo1080G0390' => 'vmu', 'VMungo1080G1165' => 'vmu', 'VMungo1127G0170' => 'vmu', 'VMungo1127G2099' => 'vmu', 'VMungo1215G3013' => 'vmu', 'Zm00001eb013110' => 'zma', 'Zm00001eb084260' => 'zma', 'Zm00001eb096110' => 'zma', 'Zm00001eb217510' => 'zma', 'Zm00001eb322550' => 'zma', 'Zm00001eb390770' => 'zma', 'Zm00001eb397170' => 'zma', 'Zm00001eb404610' => 'zma', 'Zm00001eb421790' => 'zma' ) $gf_id = 'HOM05D000911' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000911' ) $data_identifier = 'HOM05D000911' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 16, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 5, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 6, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 8, 'nnu' => (int) 16, 'oeu' => (int) 8, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 5, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 16, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421790' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000911', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27780' => 'bna', 'A03p35380' => 'bna', 'A04p21160' => 'bna', 'A05p40570' => 'bna', 'A06p26900' => 'bna', 'A08p33230' => 'bna', 'A09p65960' => 'bna', 'A10p18290' => 'bna', 'Aa31LG1G12990' => 'aar', 'Aa31LG1G2980' => 'aar', 'Aa31LG4G14320' => 'aar', 'Aa31LG7G11800' => 'aar', 'Aa31sc36G50' => 'aar', 'Aa31sc36G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3721' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5459' => 'aag', 'Actinidia03028' => 'ach', 'Actinidia03753' => 'ach', 'Actinidia04187' => 'ach', 'Actinidia05509' => 'ach', 'Actinidia24180' => 'ach', 'Actinidia26906' => 'ach', 'Actinidia37097' => 'ach', 'Actinidia38249' => 'ach', 'Ah.01g003470' => 'amhyb', 'Ah.01g004580' => 'amhyb', 'Ah.01g014850' => 'amhyb', 'Ah.01g016830' => 'amhyb', 'Ah.14g088000' => 'amhyb', 'AL1G22980' => 'aly', 'AL3G18990' => 'aly', 'AL4G22440' => 'aly', 'AL4G33180' => 'aly', 'AL5G22920' => 'aly', 'AL6G33660' => 'aly', 'AL8G20720' => 'aly', 'Aqoxy1G00935' => 'aox', 'Aqoxy1G02094' => 'aox', 'Aqoxy2G01239' => 'aox', 'Aqoxy4G01870' => 'aox', 'Aqoxy7G00450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.36ZVTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71EM27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5D6C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH3WRE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3NCM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RIM768' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YB5YRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z36GDV' => 'arhy', 'AT1G08250' => 'ath', 'AT1G11790' => 'ath', 'AT2G27820' => 'ath', 'AT3G07630' => 'ath', 'AT3G44720' => 'ath', 'AT5G22630' => 'ath', 'ATR0693G304' => 'atr', 'ATR0794G109' => 'atr', 'ATR0820G120' => 'atr', 'ATR1159G064' => 'atr', 'Atru.chr10.2239' => 'acertr', 'Atru.chr3.3371' => 'acertr', 'Atru.chr6.3202' => 'acertr', 'AUR62006499' => 'cqu', 'AUR62012718' => 'cqu', 'AUR62021938' => 'cqu', 'AUR62023932' => 'cqu', 'AUR62025034' => 'cqu', 'AUR62025035' => 'cqu', 'AUR62038307' => 'cqu', 'AUR62043466' => 'cqu', 'BcaB02g10748' => 'bca', 'BcaB03g13231' => 'bca', 'BcaB03g14689' => 'bca', 'BcaB05g22716' => 'bca', 'BcaB06g28172' => 'bca', 'BcaB08g36413' => 'bca', 'BcaC01g02186' => 'bca', 'BcaC01g04272' => 'bca', 'BcaC02g08080' => 'bca', 'BcaC02g08227' => 'bca', 'BcaC03g13901' => 'bca', 'BcaC04g19593' => 'bca', 'BcaC04g20874' => 'bca', 'BcaC05g29557' => 'bca', 'BcaC06g35505' => 'bca', 'BcaC07g41954' => 'bca', 'BcaC07g41955' => 'bca', 'BcaC07g41956' => 'bca', 'BcaC07g42519' => 'bca', 'BcaC07g42520' => 'bca', 'BcaC07g42523' => 'bca', 'BcaC07g42524' => 'bca', 'BcaC07g42525' => 'bca', 'BcaC08g47480' => 'bca', 'BcaC08g47481' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00530' => 'bna', 'BolC2t07178H' => 'bol', 'BolC3t16567H' => 'bol', 'BolC4t27234H' => 'bol', 'BolC5t29728H' => 'bol', 'BolC5t34622H' => 'bol', 'BolC6t40321H' => 'bol', 'BolC7t42028H' => 'bol', 'BolC8t49125H' => 'bol', 'BolC8t52538H' => 'bol', 'BolC8t52539H' => 'bol', 'BolC9t56681H' => 'bol', 'BolC9t58266H' => 'bol', 'BolSC21t60294H' => 'bol', 'BraA02t05670Z' => 'bra', 'BraA03t12716Z' => 'bra', 'BraA04t17685Z' => 'bra', 'BraA05t22788Z' => 'bra', 'BraA06t24032Z' => 'bra', 'BraA06t25625Z' => 'bra', 'BraA07t27930Z' => 'bra', 'BraA08t35242Z' => 'bra', 'BraA09t38609Z' => 'bra', 'BraA10t43905Z' => 'bra', 'C02p11060' => 'bna', 'C03p42990' => 'bna', 'C03p67310' => 'bna', 'C04p56990' => 'bna', 'C04p58660' => 'bna', 'C05p09890' => 'bna', 'C05p59680' => 'bna', 'C06p19830' => 'bna', 'C06p53040' => 'bna', 'C07p15230' => 'bna', 'C08p50070' => 'bna', 'C08p50090' => 'bna', 'C09p38330' => 'bna', 'C09p53940' => 'bna', 'CAN.G1014.1' => 'can', 'CAN.G644.30' => 'can', 'CAN.G84.47' => 'can', 'CAN.G919.8' => 'can', 'CANSAT54G0113' => 'cansat', 'CANSAT54G1286' => 'cansat', 'CANSAT64G1020' => 'cansat', 'CARHR008080' => 'chi', 'CARHR008090' => 'chi', 'CARHR012130' => 'chi', 'CARHR038390' => 'chi', 'CARHR082330' => 'chi', 'CARHR120520' => 'chi', 'CARHR151470' => 'chi', 'CARHR190950' => 'chi', 'Carub.0001s0760' => 'cru', 'Carub.0001s1146' => 'cru', 'Carub.0003s0721' => 'cru', 'Carub.0004s0858' => 'cru', 'Carub.0005s1040' => 'cru', 'Carub.0006s2035' => 'cru', 'Carub.0015s0005' => 'cru', 'Ca_01607_v3' => 'car', 'Ca_01677_v3' => 'car', 'Ca_06087_v3' => 'car', 'Ca_19238_v3' => 'car', 'Ca_19373_v3' => 'car', 'Ca_21079_v3' => 'car', 'CBR_g54016' => 'cbr', 'CBR_g54018' => 'cbr', 'CBR_g54020' => 'cbr', 'Cc01_g09780' => 'ccan', 'Cc01_g11680' => 'ccan', 'Cc02_g15610' => 'ccan', 'Cc05_g04350' => 'ccan', 'Cc09_g01580' => 'ccan', 'CDE01G0795' => 'cde', 'CDE02G2024' => 'cde', 'CDE02G2260' => 'cde', 'CDE02G4561' => 'cde', 'CDE05G2733' => 'cde', 'CDE05G3422' => 'cde', 'CDE06G2003' => 'cde', 'CDE08G0576' => 'cde', 'CDE09G0048' => 'cde', 'CDE11G0805' => 'cde', 'Cfa003644' => 'cfa', 'Cfa006290' => 'cfa', 'Cfa010080' => 'cfa', 'Cfa011376' => 'cfa', 'Cfa011576' => 'cfa', 'Cfa011577' => 'cfa', 'Cfa014389' => 'cfa', 'Ciclev10006044m.g' => 'ccl', 'Ciclev10006954m.g' => 'ccl', 'Ciclev10015131m.g' => 'ccl', 'Ciclev10015580m.g' => 'ccl', 'Ciclev10028359m.g' => 'ccl', 'Ciclev10028573m.g' => 'ccl', 'CiPaw.03G159300' => 'cil', 'CiPaw.04G115100' => 'cil', 'CiPaw.09G092800' => 'cil', 'CiPaw.10G071800' => 'cil', 'CiPaw.13G105800' => 'cil', 'CiPaw.13G141000' => 'cil', 'CiPaw.14G103400' => 'cil', 'ClCG01G012700' => 'cla', 'ClCG01G012720' => 'cla', 'ClCG01G021920' => 'cla', 'ClCG02G008870' => 'cla', 'ClCG02G020840' => 'cla', 'ClCG02G021930' => 'cla', 'COL.COLO4_19302' => 'col', 'COL.COLO4_25262' => 'col', 'COL.COLO4_31788' => 'col', 'Cpa.g.c34684' => 'cpa', 'Cpa.g.c36520.1' => 'cpa', 'Cpa.g.c45626' => 'cpa', 'Cpa.g.sc121.17' => 'cpa', 'Cpa.g.sc13.22' => 'cpa', 'Cpa.g.sc87.88' => 'cpa', 'Cre06.g261800' => 'cre', 'CsaV3_1G014500' => 'csa', 'CsaV3_1G014510' => 'csa', 'CsaV3_2G034880' => 'csa', 'CsaV3_6G014760' => 'csa', 'CsaV3_6G021500' => 'csa', 'CsaV3_6G048980' => 'csa', 'CSS0002511' => 'camsi', 'CSS0007556' => 'camsi', 'CSS0008532' => 'camsi', 'CSS0009709' => 'camsi', 'CSS0010486' => 'camsi', 'CSS0016768' => 'camsi', 'CSS0023512' => 'camsi', 'CSS0025341' => 'camsi', 'CSS0027999' => 'camsi', 'CSS0028944' => 'camsi', 'CSS0032292' => 'camsi', 'CSS0032464' => 'camsi', 'CSS0037153' => 'camsi', 'CSS0039256' => 'camsi', 'CSS0048392' => 'camsi', 'CSS0050458' => 'camsi', 'DCAR_004224' => 'dca', 'DCAR_006147' => 'dca', 'DCAR_006465' => 'dca', 'DCAR_008159' => 'dca', 'DCAR_012164' => 'dca', 'DCAR_019764' => 'dca', 'Dinv05418' => 'din', 'Dinv10839' => 'din', 'Dinv12521' => 'din', 'Dinv13900' => 'din', 'Dinv29426' => 'din', 'Duzib150G0263' => 'dzi', 'Duzib168G1178' => 'dzi', 'Duzib168G1924' => 'dzi', 'Duzib170G0299' => 'dzi', 'Duzib170G0813' => 'dzi', 'Duzib235G1128' => 'dzi', 'Duzib248G1060' => 'dzi', 'ECA232G1910' => 'eca', 'ECA233G4621' => 'eca', 'ECA238G1216' => 'eca', 'ECA238G1784' => 'eca', 'ECA248G1242' => 'eca', 'EL10Ac8g20071' => 'bvu', 'EL10Ac9g21086' => 'bvu', 'EL10Ac9g22407' => 'bvu', 'EL10Ac9g22412' => 'bvu', 'Eucgr.A01119' => 'egr', 'Eucgr.E04043' => 'egr', 'Eucgr.J00428' => 'egr', 'Eucgr.J00958' => 'egr', 'FAN11G3091' => 'fan', 'FAN11G3651' => 'fan', 'FAN16G2566' => 'fan', 'FAN21G3155' => 'fan', 'FAN21G3400' => 'fan', 'FAN21G3543' => 'fan', 'FAN25G0234' => 'fan', 'FAN25G1422' => 'fan', 'FAN25G3392' => 'fan', 'FvH4_3g01940' => 'fve', 'FvH4_3g29870' => 'fve', 'FvH4_3g33680' => 'fve', 'Glyma.09G004200' => 'gma', 'Glyma.11G151288' => 'gma', 'Glyma.11G189100' => 'gma', 'Glyma.12G072500' => 'gma', 'Glyma.12G085500' => 'gma', 'Glyma.12G181800' => 'gma', 'Glyma.12G193000' => 'gma', 'Glyma.13G309300' => 'gma', 'Glyma.13G319000' => 'gma', 'Glyma.17G012600' => 'gma', 'Gohir.A06G148600' => 'ghi', 'Gohir.A07G115800' => 'ghi', 'Gohir.A08G003600' => 'ghi', 'Gohir.A09G093300' => 'ghi', 'Gohir.A09G105400' => 'ghi', 'Gohir.A09G105500' => 'ghi', 'Gohir.D06G154600' => 'ghi', 'Gohir.D07G120200' => 'ghi', 'Gohir.D08G013900' => 'ghi', 'Gohir.D09G093100' => 'ghi', 'Gohir.D09G102200' => 'ghi', 'Gohir.D09G102300' => 'ghi', 'Gorai.001G129400' => 'gra', 'Gorai.004G008200' => 'gra', 'Gorai.006G109800' => 'gra', 'Gorai.006G119500' => 'gra', 'Gorai.006G121300' => 'gra', 'Gorai.010G180700' => 'gra', 'GSVIVG01012716001' => 'vvi', 'GSVIVG01025118001' => 'vvi', 'GSVIVG01030439001' => 'vvi', 'GSVIVG01031397001' => 'vvi', 'HanXRQChr01g0004201' => 'han', 'HanXRQChr02g0054941' => 'han', 'HanXRQChr05g0141811' => 'han', 'HanXRQChr07g0197751' => 'han', 'HanXRQChr11g0346691' => 'han', 'HanXRQChr13g0396971' => 'han', 'HanXRQChr14g0432951' => 'han', 'HanXRQChr14g0452001' => 'han', 'HanXRQChr15g0496681' => 'han', 'HanXRQChr17g0557491' => 'han', 'HanXRQChr17g0557501' => 'han', 'Haze_06809' => 'cav', 'Haze_12852' => 'cav', 'Haze_15850' => 'cav', 'Haze_23446' => 'cav', 'Haze_23942' => 'cav', 'Haze_23943' => 'cav', 'Hma1.2p1_0091F.1_g046450' => 'hma', 'Hma1.2p1_0128F.1_g059910' => 'hma', 'Hma1.2p1_0249F.1_g102260' => 'hma', 'Hma1.2p1_0453F.1_g156190' => 'hma', 'Hma1.2p1_0695F.1_g204380' => 'hma', 'Hma1.2p1_0749F.1_g212650' => 'hma', 'Hma1.2p1_2156F.1_g315420' => 'hma', 'Hma1.2p1_2686F.1_g326940' => 'hma', 'HPP92_006428' => 'vpl', 'HPP92_012069' => 'vpl', 'HPP92_014129' => 'vpl', 'HPP92_014133' => 'vpl', 'HPP92_017315' => 'vpl', 'HPP92_026445' => 'vpl', 'HPP92_026446' => 'vpl', 'Hund00774' => 'sun', 'Hund07682' => 'sun', 'Hund21413' => 'sun', 'Hund23462' => 'sun', 'Hund23463' => 'sun', 'Lalb_Chr03g0027911' => 'lal', 'Lalb_Chr13g0304271' => 'lal', 'Lalb_Chr19g0137471' => 'lal', 'Lalb_Chr22g0350651' => 'lal', 'Lalb_Chr24g0395151' => 'lal', 'Lj1A1231T40' => 'lonja', 'Lj1A221T48' => 'lonja', 'Lj1C924T12' => 'lonja', 'Lj2C993G6' => 'lonja', 'Lj3g0005790' => 'lja', 'Lj3g0015432' => 'lja', 'Lj3g0017722' => 'lja', 'Lj3g0018497' => 'lja', 'Lj4g0025071' => 'lja', 'Lsat_1_v5_gn_1_129680' => 'lsa', 'Lsat_1_v5_gn_2_25321' => 'lsa', 'Lsat_1_v5_gn_2_95461' => 'lsa', 'Lsat_1_v5_gn_4_159620' => 'lsa', 'Lsat_1_v5_gn_6_41301' => 'lsa', 'Lsat_1_v5_gn_6_74660' => 'lsa', 'Lsat_1_v5_gn_7_11520' => 'lsa', 'Lsat_1_v5_gn_9_67680' => 'lsa', 'Manes.04G008300' => 'mes', 'Manes.04G008400' => 'mes', 'Manes.04G026500' => 'mes', 'Manes.10G135300' => 'mes', 'Manes.11G157300' => 'mes', 'Manes.12G074000' => 'mes', 'Manes.16G006200' => 'mes', 'Manes.17G026400' => 'mes', 'Mapoly0024s0086' => 'mpo', 'Mapoly0024s0087' => 'mpo', 'Mapoly0071s0057' => 'mpo', 'Mapoly0204s0012' => 'mpo', 'MBI04_g37681_MAGBIO' => 'mbi', 'MBI05_g17779_MAGBIO' => 'mbi', 'MBI12_g31184_MAGBIO' => 'mbi', 'MBI17_g11083_MAGBIO' => 'mbi', 'MBI18_g03883_MAGBIO' => 'mbi', 'MBI18_g28940_MAGBIO' => 'mbi', 'MCO01G690' => 'mco', 'MD03G1109900' => 'mdo', 'MD03G1134800' => 'mdo', 'MD05G1348000' => 'mdo', 'MD10G1322400' => 'mdo', 'MD11G1123300' => 'mdo', 'MD11G1157600' => 'mdo', 'Medtr2g084875' => 'mtr', 'Medtr2g088130' => 'mtr', 'Medtr4g055310' => 'mtr', 'Medtr4g061070' => 'mtr', 'Medtr4g132250' => 'mtr', 'MELO3C004795.2' => 'cme', 'MELO3C004797.2' => 'cme', 'MELO3C007396.2' => 'cme', 'MELO3C019277.2' => 'cme', 'MELO3C021449.2' => 'cme', 'MELO3C025736.2' => 'cme', 'Migut.D02175' => 'egut', 'Migut.H01573' => 'egut', 'Migut.M01327' => 'egut', 'Migut.N02513' => 'egut', 'MSTRG.14638' => 'ama', 'MSTRG.18632' => 'ama', 'MSTRG.7203' => 'ama', 'Nitab4.5_0000533g0140' => 'nta', 'Nitab4.5_0000888g0150' => 'nta', 'Nitab4.5_0001453g0040' => 'nta', 'Nitab4.5_0002827g0090' => 'nta', 'Nitab4.5_0003082g0040' => 'nta', 'Nitab4.5_0007799g0040' => 'nta', 'Nitab4.5_0008983g0010' => 'nta', 'Nitab4.5_0009017g0020' => 'nta', 'Nn1g02132' => 'nnu', 'Nn1g03492' => 'nnu', 'Nn1g03493' => 'nnu', 'Nn1g03494' => 'nnu', 'Nn1g07164' => 'nnu', 'Nn1g07291' => 'nnu', 'Nn2g10655' => 'nnu', 'Nn2g11652' => 'nnu', 'Nn2g14008' => 'nnu', 'Nn3g17476' => 'nnu', 'Nn3g17477' => 'nnu', 'Nn4g22370' => 'nnu', 'Nn4g25255' => 'nnu', 'Nn5g27755' => 'nnu', 'Nn6g34260' => 'nnu', 'Nn6g35041' => 'nnu', 'Oeu005924.1' => 'oeu', 'Oeu008383.1' => 'oeu', 'Oeu014928.1' => 'oeu', 'Oeu019889.1' => 'oeu', 'Oeu022271.1' => 'oeu', 'Oeu025271.1' => 'oeu', 'Oeu036302.1' => 'oeu', 'Oeu044100.1' => 'oeu', 'Os01g0528300' => 'osa', 'Os03g0286200' => 'osa', 'Os04g0406600' => 'osa', 'Os07g0512000' => 'osa', 'Os07g0694600' => 'osa', 'Os08g0411000' => 'osa', 'Os09g0565700' => 'osa', 'Os09g0566050' => 'osa', 'Os10g0523700' => 'osa', 'Peaxi162Scf00002g00514' => 'pax', 'Peaxi162Scf00047g01817' => 'pax', 'Peaxi162Scf00114g00001' => 'pax', 'Peaxi162Scf00147g00613' => 'pax', 'Peaxi162Scf00389g00425' => 'pax', 'PGR042G1139' => 'pgr', 'PGR042G3273' => 'pgr', 'PGR102G2180' => 'pgr', 'PGR119G0234' => 'pgr', 'PGR119G0668' => 'pgr', 'PGSC0003DMG400007122' => 'stu', 'PGSC0003DMG400016478' => 'stu', 'PGSC0003DMG400025374' => 'stu', 'PGSC0003DMG400026536' => 'stu', 'Phvul.003G079600' => 'pvu', 'Phvul.005G115600' => 'pvu', 'Phvul.005G127100' => 'pvu', 'Phvul.006G149500' => 'pvu', 'Phvul.006G149600' => 'pvu', 'Phvul.011G071800' => 'pvu', 'Phvul.011G090400' => 'pvu', 'Potri.004G013400' => 'ptr', 'Potri.004G188100' => 'ptr', 'Potri.008G195500' => 'ptr', 'Potri.009G148800' => 'ptr', 'Potri.011G004700' => 'ptr', 'Pp3c17_22810' => 'ppa', 'Pp3c18_4480' => 'ppa', 'Pp3c19_13030' => 'ppa', 'Pp3c1_33620' => 'ppa', 'Pp3c2_9380' => 'ppa', 'PRCOL_00001023' => 'pco', 'Prupe.3G216300' => 'ppe', 'Prupe.4G019500' => 'ppe', 'Prupe.6G092500' => 'ppe', 'Prupe.6G119200' => 'ppe', 'Psat0s1945g0080' => 'psa', 'Psat0s4167g0040' => 'psa', 'Psat1g185800' => 'psa', 'Psat4g006440' => 'psa', 'Psat4g006480' => 'psa', 'Psat4g168120' => 'psa', 'Psat5g255680' => 'psa', 'Psat5g261760' => 'psa', 'Psat7g222120' => 'psa', 'PSO063G7252' => 'pso', 'PSO170G4778' => 'pso', 'PSO210G2249' => 'pso', 'PSO339G2411' => 'pso', 'PSO339G2457' => 'pso', 'PSO339G2854' => 'pso', 'PSO339G4288' => 'pso', 'PSO339G4615' => 'pso', 'PSO384G2796' => 'pso', 'PSO384G2940' => 'pso', 'PSO384G4227' => 'pso', 'PSO478G1425' => 'pso', 'PSO541G3863' => 'pso', 'PSO675G0507' => 'pso', 'PSO782G0338' => 'pso', 'PSO832G0644' => 'pso', 'QL01p013664' => 'qlo', 'QL01p036598' => 'qlo', 'QL05p072984' => 'qlo', 'QL08p005768' => 'qlo', 'QL08p032743' => 'qlo', 'QL93p0073_0439' => 'qlo', 'QL93p0073_0444' => 'qlo', 'RcHm_v2.0_Chr5g0002851' => 'rch', 'RcHm_v2.0_Chr5g0055201' => 'rch', 'RcHm_v2.0_Chr5g0061191' => 'rch', 'RcHm_v2.0_Chr7g0203231' => 'rch', 'Rhsim01G0208100' => 'rsi', 'Rhsim01G0208200' => 'rsi', 'Rhsim02G0106500' => 'rsi', 'Rhsim03G0107900' => 'rsi', 'Rhsim06G0163400' => 'rsi', 'Rhsim13G0105200' => 'rsi', 'Sabra04G0006300' => 'sbr', 'Sabra04G0127000' => 'sbr', 'Sabra08G0148700' => 'sbr', 'Sabra09G0117400' => 'sbr', 'SalBow1G3326' => 'sbo', 'SalBow3G3228' => 'sbo', 'SalBow6G1634' => 'sbo', 'SalBow6G3603' => 'sbo', 'SalBow6G5266' => 'sbo', 'SalBow7G2265' => 'sbo', 'SalBow8G0850' => 'sbo', 'SalBow8G2592' => 'sbo', 'Sc05g0009240' => 'sci', 'Sc12g0002300' => 'sci', 'Sc21g0000100' => 'sci', 'Sc21g0004720' => 'sci', 'Sed0002949' => 'sed', 'Sed0004114' => 'sed', 'Sed0004306' => 'sed', 'Sed0006172' => 'sed', 'Sed0008413' => 'sed', 'Sed0013809' => 'sed', 'Sed0019556' => 'sed', 'SEGI_03570' => 'sgi', 'SEGI_07859' => 'sgi', 'SEGI_15042' => 'sgi', 'SEGI_16263' => 'sgi', 'SEGI_16552' => 'sgi', 'SEGI_24331' => 'sgi', 'SEGI_27316' => 'sgi', 'SEGI_29521' => 'sgi', 'SEGI_41342' => 'sgi', 'SGA_v2.0_scaffold27G11617' => 'sas', 'SGA_v2.0_scaffold316G48428' => 'sas', 'SGA_v2.0_scaffold49G18261' => 'sas', 'SGA_v2.0_scaffold7G03831' => 'sas', 'SGA_v2.0_scaffold93G28359' => 'sas', 'SHI02210' => 'shi', 'SHI06028' => 'shi', 'SHI06321' => 'shi', 'SMO111G0012' => 'smo', 'SMO228G0080' => 'smo', 'SMO356G0756' => 'smo', 'Solyc02g080620.3' => 'sly', 'Solyc06g074530.1' => 'sly', 'Solyc11g066890.1' => 'sly', 'Solyc11g072520.3' => 'sly', 'Sopen02g025330' => 'spe', 'Sopen06g031000' => 'spe', 'Sopen09g008240' => 'spe', 'Sopen09g025210' => 'spe', 'Sopen11g026600' => 'spe', 'Sopen11g030170' => 'spe', 'Sp1g10420' => 'spa', 'Sp3g06570' => 'spa', 'Sp4g10660' => 'spa', 'Sp5g16460' => 'spa', 'Sp6g22710' => 'spa', 'TAR365G0112' => 'tar', 'TAR369G0717' => 'tar', 'TAR374G0976' => 'tar', 'TAR623G1128' => 'tar', 'TAR626G1937' => 'tar', 'TAR627G0123' => 'tar', 'TAR628G0305' => 'tar', 'TAR636G1176' => 'tar', 'TAR636G2442' => 'tar', 'THA.LOC104800556' => 'tha', 'THA.LOC104809501' => 'tha', 'THA.LOC104815126' => 'tha', 'THA.LOC104815732' => 'tha', 'THA.LOC104823528' => 'tha', 'Thecc.02G365600' => 'tca', 'Thecc.06G222300' => 'tca', 'Thecc.09G261800' => 'tca', 'Thecc.09G291400' => 'tca', 'Thhalv10003028m.g' => 'esa', 'Thhalv10007886m.g' => 'esa', 'Thhalv10016085m.g' => 'esa', 'Thhalv10016681m.g' => 'esa', 'Thhalv10020951m.g' => 'esa', 'TPR.G15598' => 'tpr', 'TPR.G29305' => 'tpr', 'TPR.G32395' => 'tpr', 'TPR.G36998' => 'tpr', 'TPR.G4227' => 'tpr', 'TWI18G1433' => 'twi', 'TWI31G0755' => 'twi', 'TWI38G0912' => 'twi', 'TWI75G1097' => 'twi', 'TWI75G1619' => 'twi', 'TWI79G1336' => 'twi', 'unitig_0.g943' => 'ugi', 'unitig_0.g944' => 'ugi', 'unitig_22.g6646' => 'ugi', 'unitig_37.g12681' => 'ugi', 'unitig_8.g3290' => 'ugi', 'vmacro03278' => 'vma', 'vmacro12197' => 'vma', 'vmacro14478' => 'vma', 'vmacro15787' => 'vma', 'vmacro15789' => 'vma', 'vmacro15790' => 'vma', 'vmacro15806' => 'vma', 'vmacro22907' => 'vma', 'vmacro22908' => 'vma', 'vmacro22909' => 'vma', 'vmacro23108' => 'vma', 'VMungo0540G0540' => 'vmu', 'VMungo0540G2468' => 'vmu', 'VMungo1080G0390' => 'vmu', 'VMungo1080G1165' => 'vmu', 'VMungo1127G0170' => 'vmu', 'VMungo1127G2099' => 'vmu', 'VMungo1215G3013' => 'vmu', 'Zm00001eb013110' => 'zma', 'Zm00001eb084260' => 'zma', 'Zm00001eb096110' => 'zma', 'Zm00001eb217510' => 'zma', 'Zm00001eb322550' => 'zma', 'Zm00001eb390770' => 'zma', 'Zm00001eb397170' => 'zma', 'Zm00001eb404610' => 'zma', 'Zm00001eb421790' => 'zma' ), 'gf_id' => 'HOM05D000911', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000911' ), 'data_identifier' => 'HOM05D000911', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000911', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27780' => 'bna', 'A03p35380' => 'bna', 'A04p21160' => 'bna', 'A05p40570' => 'bna', 'A06p26900' => 'bna', 'A08p33230' => 'bna', 'A09p65960' => 'bna', 'A10p18290' => 'bna', 'Aa31LG1G12990' => 'aar', 'Aa31LG1G2980' => 'aar', 'Aa31LG4G14320' => 'aar', 'Aa31LG7G11800' => 'aar', 'Aa31sc36G50' => 'aar', 'Aa31sc36G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3721' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5459' => 'aag', 'Actinidia03028' => 'ach', 'Actinidia03753' => 'ach', 'Actinidia04187' => 'ach', 'Actinidia05509' => 'ach', 'Actinidia24180' => 'ach', 'Actinidia26906' => 'ach', 'Actinidia37097' => 'ach', 'Actinidia38249' => 'ach', 'Ah.01g003470' => 'amhyb', 'Ah.01g004580' => 'amhyb', 'Ah.01g014850' => 'amhyb', 'Ah.01g016830' => 'amhyb', 'Ah.14g088000' => 'amhyb', 'AL1G22980' => 'aly', 'AL3G18990' => 'aly', 'AL4G22440' => 'aly', 'AL4G33180' => 'aly', 'AL5G22920' => 'aly', 'AL6G33660' => 'aly', 'AL8G20720' => 'aly', 'Aqoxy1G00935' => 'aox', 'Aqoxy1G02094' => 'aox', 'Aqoxy2G01239' => 'aox', 'Aqoxy4G01870' => 'aox', 'Aqoxy7G00450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.36ZVTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71EM27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5D6C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH3WRE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3NCM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RIM768' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YB5YRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z36GDV' => 'arhy', 'AT1G08250' => 'ath', 'AT1G11790' => 'ath', 'AT2G27820' => 'ath', 'AT3G07630' => 'ath', 'AT3G44720' => 'ath', 'AT5G22630' => 'ath', 'ATR0693G304' => 'atr', 'ATR0794G109' => 'atr', 'ATR0820G120' => 'atr', 'ATR1159G064' => 'atr', 'Atru.chr10.2239' => 'acertr', 'Atru.chr3.3371' => 'acertr', 'Atru.chr6.3202' => 'acertr', 'AUR62006499' => 'cqu', 'AUR62012718' => 'cqu', 'AUR62021938' => 'cqu', 'AUR62023932' => 'cqu', 'AUR62025034' => 'cqu', 'AUR62025035' => 'cqu', 'AUR62038307' => 'cqu', 'AUR62043466' => 'cqu', 'BcaB02g10748' => 'bca', 'BcaB03g13231' => 'bca', 'BcaB03g14689' => 'bca', 'BcaB05g22716' => 'bca', 'BcaB06g28172' => 'bca', 'BcaB08g36413' => 'bca', 'BcaC01g02186' => 'bca', 'BcaC01g04272' => 'bca', 'BcaC02g08080' => 'bca', 'BcaC02g08227' => 'bca', 'BcaC03g13901' => 'bca', 'BcaC04g19593' => 'bca', 'BcaC04g20874' => 'bca', 'BcaC05g29557' => 'bca', 'BcaC06g35505' => 'bca', 'BcaC07g41954' => 'bca', 'BcaC07g41955' => 'bca', 'BcaC07g41956' => 'bca', 'BcaC07g42519' => 'bca', 'BcaC07g42520' => 'bca', 'BcaC07g42523' => 'bca', 'BcaC07g42524' => 'bca', 'BcaC07g42525' => 'bca', 'BcaC08g47480' => 'bca', 'BcaC08g47481' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00530' => 'bna', 'BolC2t07178H' => 'bol', 'BolC3t16567H' => 'bol', 'BolC4t27234H' => 'bol', 'BolC5t29728H' => 'bol', 'BolC5t34622H' => 'bol', 'BolC6t40321H' => 'bol', 'BolC7t42028H' => 'bol', 'BolC8t49125H' => 'bol', 'BolC8t52538H' => 'bol', 'BolC8t52539H' => 'bol', 'BolC9t56681H' => 'bol', 'BolC9t58266H' => 'bol', 'BolSC21t60294H' => 'bol', 'BraA02t05670Z' => 'bra', 'BraA03t12716Z' => 'bra', 'BraA04t17685Z' => 'bra', 'BraA05t22788Z' => 'bra', 'BraA06t24032Z' => 'bra', 'BraA06t25625Z' => 'bra', 'BraA07t27930Z' => 'bra', 'BraA08t35242Z' => 'bra', 'BraA09t38609Z' => 'bra', 'BraA10t43905Z' => 'bra', 'C02p11060' => 'bna', 'C03p42990' => 'bna', 'C03p67310' => 'bna', 'C04p56990' => 'bna', 'C04p58660' => 'bna', 'C05p09890' => 'bna', 'C05p59680' => 'bna', 'C06p19830' => 'bna', 'C06p53040' => 'bna', 'C07p15230' => 'bna', 'C08p50070' => 'bna', 'C08p50090' => 'bna', 'C09p38330' => 'bna', 'C09p53940' => 'bna', 'CAN.G1014.1' => 'can', 'CAN.G644.30' => 'can', 'CAN.G84.47' => 'can', 'CAN.G919.8' => 'can', 'CANSAT54G0113' => 'cansat', 'CANSAT54G1286' => 'cansat', 'CANSAT64G1020' => 'cansat', 'CARHR008080' => 'chi', 'CARHR008090' => 'chi', 'CARHR012130' => 'chi', 'CARHR038390' => 'chi', 'CARHR082330' => 'chi', 'CARHR120520' => 'chi', 'CARHR151470' => 'chi', 'CARHR190950' => 'chi', 'Carub.0001s0760' => 'cru', 'Carub.0001s1146' => 'cru', 'Carub.0003s0721' => 'cru', 'Carub.0004s0858' => 'cru', 'Carub.0005s1040' => 'cru', 'Carub.0006s2035' => 'cru', 'Carub.0015s0005' => 'cru', 'Ca_01607_v3' => 'car', 'Ca_01677_v3' => 'car', 'Ca_06087_v3' => 'car', 'Ca_19238_v3' => 'car', 'Ca_19373_v3' => 'car', 'Ca_21079_v3' => 'car', 'CBR_g54016' => 'cbr', 'CBR_g54018' => 'cbr', 'CBR_g54020' => 'cbr', 'Cc01_g09780' => 'ccan', 'Cc01_g11680' => 'ccan', 'Cc02_g15610' => 'ccan', 'Cc05_g04350' => 'ccan', 'Cc09_g01580' => 'ccan', 'CDE01G0795' => 'cde', 'CDE02G2024' => 'cde', 'CDE02G2260' => 'cde', 'CDE02G4561' => 'cde', 'CDE05G2733' => 'cde', 'CDE05G3422' => 'cde', 'CDE06G2003' => 'cde', 'CDE08G0576' => 'cde', 'CDE09G0048' => 'cde', 'CDE11G0805' => 'cde', 'Cfa003644' => 'cfa', 'Cfa006290' => 'cfa', 'Cfa010080' => 'cfa', 'Cfa011376' => 'cfa', 'Cfa011576' => 'cfa', 'Cfa011577' => 'cfa', 'Cfa014389' => 'cfa', 'Ciclev10006044m.g' => 'ccl', 'Ciclev10006954m.g' => 'ccl', 'Ciclev10015131m.g' => 'ccl', 'Ciclev10015580m.g' => 'ccl', 'Ciclev10028359m.g' => 'ccl', 'Ciclev10028573m.g' => 'ccl', 'CiPaw.03G159300' => 'cil', 'CiPaw.04G115100' => 'cil', 'CiPaw.09G092800' => 'cil', 'CiPaw.10G071800' => 'cil', 'CiPaw.13G105800' => 'cil', 'CiPaw.13G141000' => 'cil', 'CiPaw.14G103400' => 'cil', 'ClCG01G012700' => 'cla', 'ClCG01G012720' => 'cla', 'ClCG01G021920' => 'cla', 'ClCG02G008870' => 'cla', 'ClCG02G020840' => 'cla', 'ClCG02G021930' => 'cla', 'COL.COLO4_19302' => 'col', 'COL.COLO4_25262' => 'col', 'COL.COLO4_31788' => 'col', 'Cpa.g.c34684' => 'cpa', 'Cpa.g.c36520.1' => 'cpa', 'Cpa.g.c45626' => 'cpa', 'Cpa.g.sc121.17' => 'cpa', 'Cpa.g.sc13.22' => 'cpa', 'Cpa.g.sc87.88' => 'cpa', 'Cre06.g261800' => 'cre', 'CsaV3_1G014500' => 'csa', 'CsaV3_1G014510' => 'csa', 'CsaV3_2G034880' => 'csa', 'CsaV3_6G014760' => 'csa', 'CsaV3_6G021500' => 'csa', 'CsaV3_6G048980' => 'csa', 'CSS0002511' => 'camsi', 'CSS0007556' => 'camsi', 'CSS0008532' => 'camsi', 'CSS0009709' => 'camsi', 'CSS0010486' => 'camsi', 'CSS0016768' => 'camsi', 'CSS0023512' => 'camsi', 'CSS0025341' => 'camsi', 'CSS0027999' => 'camsi', 'CSS0028944' => 'camsi', 'CSS0032292' => 'camsi', 'CSS0032464' => 'camsi', 'CSS0037153' => 'camsi', 'CSS0039256' => 'camsi', 'CSS0048392' => 'camsi', 'CSS0050458' => 'camsi', 'DCAR_004224' => 'dca', 'DCAR_006147' => 'dca', 'DCAR_006465' => 'dca', 'DCAR_008159' => 'dca', 'DCAR_012164' => 'dca', 'DCAR_019764' => 'dca', 'Dinv05418' => 'din', 'Dinv10839' => 'din', 'Dinv12521' => 'din', 'Dinv13900' => 'din', 'Dinv29426' => 'din', 'Duzib150G0263' => 'dzi', 'Duzib168G1178' => 'dzi', 'Duzib168G1924' => 'dzi', 'Duzib170G0299' => 'dzi', 'Duzib170G0813' => 'dzi', 'Duzib235G1128' => 'dzi', 'Duzib248G1060' => 'dzi', 'ECA232G1910' => 'eca', 'ECA233G4621' => 'eca', 'ECA238G1216' => 'eca', 'ECA238G1784' => 'eca', 'ECA248G1242' => 'eca', 'EL10Ac8g20071' => 'bvu', 'EL10Ac9g21086' => 'bvu', 'EL10Ac9g22407' => 'bvu', 'EL10Ac9g22412' => 'bvu', 'Eucgr.A01119' => 'egr', 'Eucgr.E04043' => 'egr', 'Eucgr.J00428' => 'egr', 'Eucgr.J00958' => 'egr', 'FAN11G3091' => 'fan', 'FAN11G3651' => 'fan', 'FAN16G2566' => 'fan', 'FAN21G3155' => 'fan', 'FAN21G3400' => 'fan', 'FAN21G3543' => 'fan', 'FAN25G0234' => 'fan', 'FAN25G1422' => 'fan', 'FAN25G3392' => 'fan', 'FvH4_3g01940' => 'fve', 'FvH4_3g29870' => 'fve', 'FvH4_3g33680' => 'fve', 'Glyma.09G004200' => 'gma', 'Glyma.11G151288' => 'gma', 'Glyma.11G189100' => 'gma', 'Glyma.12G072500' => 'gma', 'Glyma.12G085500' => 'gma', 'Glyma.12G181800' => 'gma', 'Glyma.12G193000' => 'gma', 'Glyma.13G309300' => 'gma', 'Glyma.13G319000' => 'gma', 'Glyma.17G012600' => 'gma', 'Gohir.A06G148600' => 'ghi', 'Gohir.A07G115800' => 'ghi', 'Gohir.A08G003600' => 'ghi', 'Gohir.A09G093300' => 'ghi', 'Gohir.A09G105400' => 'ghi', 'Gohir.A09G105500' => 'ghi', 'Gohir.D06G154600' => 'ghi', 'Gohir.D07G120200' => 'ghi', 'Gohir.D08G013900' => 'ghi', 'Gohir.D09G093100' => 'ghi', 'Gohir.D09G102200' => 'ghi', 'Gohir.D09G102300' => 'ghi', 'Gorai.001G129400' => 'gra', 'Gorai.004G008200' => 'gra', 'Gorai.006G109800' => 'gra', 'Gorai.006G119500' => 'gra', 'Gorai.006G121300' => 'gra', 'Gorai.010G180700' => 'gra', 'GSVIVG01012716001' => 'vvi', 'GSVIVG01025118001' => 'vvi', 'GSVIVG01030439001' => 'vvi', 'GSVIVG01031397001' => 'vvi', 'HanXRQChr01g0004201' => 'han', 'HanXRQChr02g0054941' => 'han', 'HanXRQChr05g0141811' => 'han', 'HanXRQChr07g0197751' => 'han', 'HanXRQChr11g0346691' => 'han', 'HanXRQChr13g0396971' => 'han', 'HanXRQChr14g0432951' => 'han', 'HanXRQChr14g0452001' => 'han', 'HanXRQChr15g0496681' => 'han', 'HanXRQChr17g0557491' => 'han', 'HanXRQChr17g0557501' => 'han', 'Haze_06809' => 'cav', 'Haze_12852' => 'cav', 'Haze_15850' => 'cav', 'Haze_23446' => 'cav', 'Haze_23942' => 'cav', 'Haze_23943' => 'cav', 'Hma1.2p1_0091F.1_g046450' => 'hma', 'Hma1.2p1_0128F.1_g059910' => 'hma', 'Hma1.2p1_0249F.1_g102260' => 'hma', 'Hma1.2p1_0453F.1_g156190' => 'hma', 'Hma1.2p1_0695F.1_g204380' => 'hma', 'Hma1.2p1_0749F.1_g212650' => 'hma', 'Hma1.2p1_2156F.1_g315420' => 'hma', 'Hma1.2p1_2686F.1_g326940' => 'hma', 'HPP92_006428' => 'vpl', 'HPP92_012069' => 'vpl', 'HPP92_014129' => 'vpl', 'HPP92_014133' => 'vpl', 'HPP92_017315' => 'vpl', 'HPP92_026445' => 'vpl', 'HPP92_026446' => 'vpl', 'Hund00774' => 'sun', 'Hund07682' => 'sun', 'Hund21413' => 'sun', 'Hund23462' => 'sun', 'Hund23463' => 'sun', 'Lalb_Chr03g0027911' => 'lal', 'Lalb_Chr13g0304271' => 'lal', 'Lalb_Chr19g0137471' => 'lal', 'Lalb_Chr22g0350651' => 'lal', 'Lalb_Chr24g0395151' => 'lal', 'Lj1A1231T40' => 'lonja', 'Lj1A221T48' => 'lonja', 'Lj1C924T12' => 'lonja', 'Lj2C993G6' => 'lonja', 'Lj3g0005790' => 'lja', 'Lj3g0015432' => 'lja', 'Lj3g0017722' => 'lja', 'Lj3g0018497' => 'lja', 'Lj4g0025071' => 'lja', 'Lsat_1_v5_gn_1_129680' => 'lsa', 'Lsat_1_v5_gn_2_25321' => 'lsa', 'Lsat_1_v5_gn_2_95461' => 'lsa', 'Lsat_1_v5_gn_4_159620' => 'lsa', 'Lsat_1_v5_gn_6_41301' => 'lsa', 'Lsat_1_v5_gn_6_74660' => 'lsa', 'Lsat_1_v5_gn_7_11520' => 'lsa', 'Lsat_1_v5_gn_9_67680' => 'lsa', 'Manes.04G008300' => 'mes', 'Manes.04G008400' => 'mes', 'Manes.04G026500' => 'mes', 'Manes.10G135300' => 'mes', 'Manes.11G157300' => 'mes', 'Manes.12G074000' => 'mes', 'Manes.16G006200' => 'mes', 'Manes.17G026400' => 'mes', 'Mapoly0024s0086' => 'mpo', 'Mapoly0024s0087' => 'mpo', 'Mapoly0071s0057' => 'mpo', 'Mapoly0204s0012' => 'mpo', 'MBI04_g37681_MAGBIO' => 'mbi', 'MBI05_g17779_MAGBIO' => 'mbi', 'MBI12_g31184_MAGBIO' => 'mbi', 'MBI17_g11083_MAGBIO' => 'mbi', 'MBI18_g03883_MAGBIO' => 'mbi', 'MBI18_g28940_MAGBIO' => 'mbi', 'MCO01G690' => 'mco', 'MD03G1109900' => 'mdo', 'MD03G1134800' => 'mdo', 'MD05G1348000' => 'mdo', 'MD10G1322400' => 'mdo', 'MD11G1123300' => 'mdo', 'MD11G1157600' => 'mdo', 'Medtr2g084875' => 'mtr', 'Medtr2g088130' => 'mtr', 'Medtr4g055310' => 'mtr', 'Medtr4g061070' => 'mtr', 'Medtr4g132250' => 'mtr', 'MELO3C004795.2' => 'cme', 'MELO3C004797.2' => 'cme', 'MELO3C007396.2' => 'cme', 'MELO3C019277.2' => 'cme', 'MELO3C021449.2' => 'cme', 'MELO3C025736.2' => 'cme', 'Migut.D02175' => 'egut', 'Migut.H01573' => 'egut', 'Migut.M01327' => 'egut', 'Migut.N02513' => 'egut', 'MSTRG.14638' => 'ama', 'MSTRG.18632' => 'ama', 'MSTRG.7203' => 'ama', 'Nitab4.5_0000533g0140' => 'nta', 'Nitab4.5_0000888g0150' => 'nta', 'Nitab4.5_0001453g0040' => 'nta', 'Nitab4.5_0002827g0090' => 'nta', 'Nitab4.5_0003082g0040' => 'nta', 'Nitab4.5_0007799g0040' => 'nta', 'Nitab4.5_0008983g0010' => 'nta', 'Nitab4.5_0009017g0020' => 'nta', 'Nn1g02132' => 'nnu', 'Nn1g03492' => 'nnu', 'Nn1g03493' => 'nnu', 'Nn1g03494' => 'nnu', 'Nn1g07164' => 'nnu', 'Nn1g07291' => 'nnu', 'Nn2g10655' => 'nnu', 'Nn2g11652' => 'nnu', 'Nn2g14008' => 'nnu', 'Nn3g17476' => 'nnu', 'Nn3g17477' => 'nnu', 'Nn4g22370' => 'nnu', 'Nn4g25255' => 'nnu', 'Nn5g27755' => 'nnu', 'Nn6g34260' => 'nnu', 'Nn6g35041' => 'nnu', 'Oeu005924.1' => 'oeu', 'Oeu008383.1' => 'oeu', 'Oeu014928.1' => 'oeu', 'Oeu019889.1' => 'oeu', 'Oeu022271.1' => 'oeu', 'Oeu025271.1' => 'oeu', 'Oeu036302.1' => 'oeu', 'Oeu044100.1' => 'oeu', 'Os01g0528300' => 'osa', 'Os03g0286200' => 'osa', 'Os04g0406600' => 'osa', 'Os07g0512000' => 'osa', 'Os07g0694600' => 'osa', 'Os08g0411000' => 'osa', 'Os09g0565700' => 'osa', 'Os09g0566050' => 'osa', 'Os10g0523700' => 'osa', 'Peaxi162Scf00002g00514' => 'pax', 'Peaxi162Scf00047g01817' => 'pax', 'Peaxi162Scf00114g00001' => 'pax', 'Peaxi162Scf00147g00613' => 'pax', 'Peaxi162Scf00389g00425' => 'pax', 'PGR042G1139' => 'pgr', 'PGR042G3273' => 'pgr', 'PGR102G2180' => 'pgr', 'PGR119G0234' => 'pgr', 'PGR119G0668' => 'pgr', 'PGSC0003DMG400007122' => 'stu', 'PGSC0003DMG400016478' => 'stu', 'PGSC0003DMG400025374' => 'stu', 'PGSC0003DMG400026536' => 'stu', 'Phvul.003G079600' => 'pvu', 'Phvul.005G115600' => 'pvu', 'Phvul.005G127100' => 'pvu', 'Phvul.006G149500' => 'pvu', 'Phvul.006G149600' => 'pvu', 'Phvul.011G071800' => 'pvu', 'Phvul.011G090400' => 'pvu', 'Potri.004G013400' => 'ptr', 'Potri.004G188100' => 'ptr', 'Potri.008G195500' => 'ptr', 'Potri.009G148800' => 'ptr', 'Potri.011G004700' => 'ptr', 'Pp3c17_22810' => 'ppa', 'Pp3c18_4480' => 'ppa', 'Pp3c19_13030' => 'ppa', 'Pp3c1_33620' => 'ppa', 'Pp3c2_9380' => 'ppa', 'PRCOL_00001023' => 'pco', 'Prupe.3G216300' => 'ppe', 'Prupe.4G019500' => 'ppe', 'Prupe.6G092500' => 'ppe', 'Prupe.6G119200' => 'ppe', 'Psat0s1945g0080' => 'psa', 'Psat0s4167g0040' => 'psa', 'Psat1g185800' => 'psa', 'Psat4g006440' => 'psa', 'Psat4g006480' => 'psa', 'Psat4g168120' => 'psa', 'Psat5g255680' => 'psa', 'Psat5g261760' => 'psa', 'Psat7g222120' => 'psa', 'PSO063G7252' => 'pso', 'PSO170G4778' => 'pso', 'PSO210G2249' => 'pso', 'PSO339G2411' => 'pso', 'PSO339G2457' => 'pso', 'PSO339G2854' => 'pso', 'PSO339G4288' => 'pso', 'PSO339G4615' => 'pso', 'PSO384G2796' => 'pso', 'PSO384G2940' => 'pso', 'PSO384G4227' => 'pso', 'PSO478G1425' => 'pso', 'PSO541G3863' => 'pso', 'PSO675G0507' => 'pso', 'PSO782G0338' => 'pso', 'PSO832G0644' => 'pso', 'QL01p013664' => 'qlo', 'QL01p036598' => 'qlo', 'QL05p072984' => 'qlo', 'QL08p005768' => 'qlo', 'QL08p032743' => 'qlo', 'QL93p0073_0439' => 'qlo', 'QL93p0073_0444' => 'qlo', 'RcHm_v2.0_Chr5g0002851' => 'rch', 'RcHm_v2.0_Chr5g0055201' => 'rch', 'RcHm_v2.0_Chr5g0061191' => 'rch', 'RcHm_v2.0_Chr7g0203231' => 'rch', 'Rhsim01G0208100' => 'rsi', 'Rhsim01G0208200' => 'rsi', 'Rhsim02G0106500' => 'rsi', 'Rhsim03G0107900' => 'rsi', 'Rhsim06G0163400' => 'rsi', 'Rhsim13G0105200' => 'rsi', 'Sabra04G0006300' => 'sbr', 'Sabra04G0127000' => 'sbr', 'Sabra08G0148700' => 'sbr', 'Sabra09G0117400' => 'sbr', 'SalBow1G3326' => 'sbo', 'SalBow3G3228' => 'sbo', 'SalBow6G1634' => 'sbo', 'SalBow6G3603' => 'sbo', 'SalBow6G5266' => 'sbo', 'SalBow7G2265' => 'sbo', 'SalBow8G0850' => 'sbo', 'SalBow8G2592' => 'sbo', 'Sc05g0009240' => 'sci', 'Sc12g0002300' => 'sci', 'Sc21g0000100' => 'sci', 'Sc21g0004720' => 'sci', 'Sed0002949' => 'sed', 'Sed0004114' => 'sed', 'Sed0004306' => 'sed', 'Sed0006172' => 'sed', 'Sed0008413' => 'sed', 'Sed0013809' => 'sed', 'Sed0019556' => 'sed', 'SEGI_03570' => 'sgi', 'SEGI_07859' => 'sgi', 'SEGI_15042' => 'sgi', 'SEGI_16263' => 'sgi', 'SEGI_16552' => 'sgi', 'SEGI_24331' => 'sgi', 'SEGI_27316' => 'sgi', 'SEGI_29521' => 'sgi', 'SEGI_41342' => 'sgi', 'SGA_v2.0_scaffold27G11617' => 'sas', 'SGA_v2.0_scaffold316G48428' => 'sas', 'SGA_v2.0_scaffold49G18261' => 'sas', 'SGA_v2.0_scaffold7G03831' => 'sas', 'SGA_v2.0_scaffold93G28359' => 'sas', 'SHI02210' => 'shi', 'SHI06028' => 'shi', 'SHI06321' => 'shi', 'SMO111G0012' => 'smo', 'SMO228G0080' => 'smo', 'SMO356G0756' => 'smo', 'Solyc02g080620.3' => 'sly', 'Solyc06g074530.1' => 'sly', 'Solyc11g066890.1' => 'sly', 'Solyc11g072520.3' => 'sly', 'Sopen02g025330' => 'spe', 'Sopen06g031000' => 'spe', 'Sopen09g008240' => 'spe', 'Sopen09g025210' => 'spe', 'Sopen11g026600' => 'spe', 'Sopen11g030170' => 'spe', 'Sp1g10420' => 'spa', 'Sp3g06570' => 'spa', 'Sp4g10660' => 'spa', 'Sp5g16460' => 'spa', 'Sp6g22710' => 'spa', 'TAR365G0112' => 'tar', 'TAR369G0717' => 'tar', 'TAR374G0976' => 'tar', 'TAR623G1128' => 'tar', 'TAR626G1937' => 'tar', 'TAR627G0123' => 'tar', 'TAR628G0305' => 'tar', 'TAR636G1176' => 'tar', 'TAR636G2442' => 'tar', 'THA.LOC104800556' => 'tha', 'THA.LOC104809501' => 'tha', 'THA.LOC104815126' => 'tha', 'THA.LOC104815732' => 'tha', 'THA.LOC104823528' => 'tha', 'Thecc.02G365600' => 'tca', 'Thecc.06G222300' => 'tca', 'Thecc.09G261800' => 'tca', 'Thecc.09G291400' => 'tca', 'Thhalv10003028m.g' => 'esa', 'Thhalv10007886m.g' => 'esa', 'Thhalv10016085m.g' => 'esa', 'Thhalv10016681m.g' => 'esa', 'Thhalv10020951m.g' => 'esa', 'TPR.G15598' => 'tpr', 'TPR.G29305' => 'tpr', 'TPR.G32395' => 'tpr', 'TPR.G36998' => 'tpr', 'TPR.G4227' => 'tpr', 'TWI18G1433' => 'twi', 'TWI31G0755' => 'twi', 'TWI38G0912' => 'twi', 'TWI75G1097' => 'twi', 'TWI75G1619' => 'twi', 'TWI79G1336' => 'twi', 'unitig_0.g943' => 'ugi', 'unitig_0.g944' => 'ugi', 'unitig_22.g6646' => 'ugi', 'unitig_37.g12681' => 'ugi', 'unitig_8.g3290' => 'ugi', 'vmacro03278' => 'vma', 'vmacro12197' => 'vma', 'vmacro14478' => 'vma', 'vmacro15787' => 'vma', 'vmacro15789' => 'vma', 'vmacro15790' => 'vma', 'vmacro15806' => 'vma', 'vmacro22907' => 'vma', 'vmacro22908' => 'vma', 'vmacro22909' => 'vma', 'vmacro23108' => 'vma', 'VMungo0540G0540' => 'vmu', 'VMungo0540G2468' => 'vmu', 'VMungo1080G0390' => 'vmu', 'VMungo1080G1165' => 'vmu', 'VMungo1127G0170' => 'vmu', 'VMungo1127G2099' => 'vmu', 'VMungo1215G3013' => 'vmu', 'Zm00001eb013110' => 'zma', 'Zm00001eb084260' => 'zma', 'Zm00001eb096110' => 'zma', 'Zm00001eb217510' => 'zma', 'Zm00001eb322550' => 'zma', 'Zm00001eb390770' => 'zma', 'Zm00001eb397170' => 'zma', 'Zm00001eb404610' => 'zma', 'Zm00001eb421790' => 'zma' ) $gf_id = 'HOM05D000911' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000911' ) $data_identifier = 'HOM05D000911' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 16, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 5, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 6, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 8, 'nnu' => (int) 16, 'oeu' => (int) 8, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 5, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 16, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421790' $species_info = array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ) $local_species = 'cre' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000911', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27780' => 'bna', 'A03p35380' => 'bna', 'A04p21160' => 'bna', 'A05p40570' => 'bna', 'A06p26900' => 'bna', 'A08p33230' => 'bna', 'A09p65960' => 'bna', 'A10p18290' => 'bna', 'Aa31LG1G12990' => 'aar', 'Aa31LG1G2980' => 'aar', 'Aa31LG4G14320' => 'aar', 'Aa31LG7G11800' => 'aar', 'Aa31sc36G50' => 'aar', 'Aa31sc36G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3721' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5459' => 'aag', 'Actinidia03028' => 'ach', 'Actinidia03753' => 'ach', 'Actinidia04187' => 'ach', 'Actinidia05509' => 'ach', 'Actinidia24180' => 'ach', 'Actinidia26906' => 'ach', 'Actinidia37097' => 'ach', 'Actinidia38249' => 'ach', 'Ah.01g003470' => 'amhyb', 'Ah.01g004580' => 'amhyb', 'Ah.01g014850' => 'amhyb', 'Ah.01g016830' => 'amhyb', 'Ah.14g088000' => 'amhyb', 'AL1G22980' => 'aly', 'AL3G18990' => 'aly', 'AL4G22440' => 'aly', 'AL4G33180' => 'aly', 'AL5G22920' => 'aly', 'AL6G33660' => 'aly', 'AL8G20720' => 'aly', 'Aqoxy1G00935' => 'aox', 'Aqoxy1G02094' => 'aox', 'Aqoxy2G01239' => 'aox', 'Aqoxy4G01870' => 'aox', 'Aqoxy7G00450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.36ZVTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71EM27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5D6C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH3WRE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3NCM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RIM768' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YB5YRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z36GDV' => 'arhy', 'AT1G08250' => 'ath', 'AT1G11790' => 'ath', 'AT2G27820' => 'ath', 'AT3G07630' => 'ath', 'AT3G44720' => 'ath', 'AT5G22630' => 'ath', 'ATR0693G304' => 'atr', 'ATR0794G109' => 'atr', 'ATR0820G120' => 'atr', 'ATR1159G064' => 'atr', 'Atru.chr10.2239' => 'acertr', 'Atru.chr3.3371' => 'acertr', 'Atru.chr6.3202' => 'acertr', 'AUR62006499' => 'cqu', 'AUR62012718' => 'cqu', 'AUR62021938' => 'cqu', 'AUR62023932' => 'cqu', 'AUR62025034' => 'cqu', 'AUR62025035' => 'cqu', 'AUR62038307' => 'cqu', 'AUR62043466' => 'cqu', 'BcaB02g10748' => 'bca', 'BcaB03g13231' => 'bca', 'BcaB03g14689' => 'bca', 'BcaB05g22716' => 'bca', 'BcaB06g28172' => 'bca', 'BcaB08g36413' => 'bca', 'BcaC01g02186' => 'bca', 'BcaC01g04272' => 'bca', 'BcaC02g08080' => 'bca', 'BcaC02g08227' => 'bca', 'BcaC03g13901' => 'bca', 'BcaC04g19593' => 'bca', 'BcaC04g20874' => 'bca', 'BcaC05g29557' => 'bca', 'BcaC06g35505' => 'bca', 'BcaC07g41954' => 'bca', 'BcaC07g41955' => 'bca', 'BcaC07g41956' => 'bca', 'BcaC07g42519' => 'bca', 'BcaC07g42520' => 'bca', 'BcaC07g42523' => 'bca', 'BcaC07g42524' => 'bca', 'BcaC07g42525' => 'bca', 'BcaC08g47480' => 'bca', 'BcaC08g47481' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00530' => 'bna', 'BolC2t07178H' => 'bol', 'BolC3t16567H' => 'bol', 'BolC4t27234H' => 'bol', 'BolC5t29728H' => 'bol', 'BolC5t34622H' => 'bol', 'BolC6t40321H' => 'bol', 'BolC7t42028H' => 'bol', 'BolC8t49125H' => 'bol', 'BolC8t52538H' => 'bol', 'BolC8t52539H' => 'bol', 'BolC9t56681H' => 'bol', 'BolC9t58266H' => 'bol', 'BolSC21t60294H' => 'bol', 'BraA02t05670Z' => 'bra', 'BraA03t12716Z' => 'bra', 'BraA04t17685Z' => 'bra', 'BraA05t22788Z' => 'bra', 'BraA06t24032Z' => 'bra', 'BraA06t25625Z' => 'bra', 'BraA07t27930Z' => 'bra', 'BraA08t35242Z' => 'bra', 'BraA09t38609Z' => 'bra', 'BraA10t43905Z' => 'bra', 'C02p11060' => 'bna', 'C03p42990' => 'bna', 'C03p67310' => 'bna', 'C04p56990' => 'bna', 'C04p58660' => 'bna', 'C05p09890' => 'bna', 'C05p59680' => 'bna', 'C06p19830' => 'bna', 'C06p53040' => 'bna', 'C07p15230' => 'bna', 'C08p50070' => 'bna', 'C08p50090' => 'bna', 'C09p38330' => 'bna', 'C09p53940' => 'bna', 'CAN.G1014.1' => 'can', 'CAN.G644.30' => 'can', 'CAN.G84.47' => 'can', 'CAN.G919.8' => 'can', 'CANSAT54G0113' => 'cansat', 'CANSAT54G1286' => 'cansat', 'CANSAT64G1020' => 'cansat', 'CARHR008080' => 'chi', 'CARHR008090' => 'chi', 'CARHR012130' => 'chi', 'CARHR038390' => 'chi', 'CARHR082330' => 'chi', 'CARHR120520' => 'chi', 'CARHR151470' => 'chi', 'CARHR190950' => 'chi', 'Carub.0001s0760' => 'cru', 'Carub.0001s1146' => 'cru', 'Carub.0003s0721' => 'cru', 'Carub.0004s0858' => 'cru', 'Carub.0005s1040' => 'cru', 'Carub.0006s2035' => 'cru', 'Carub.0015s0005' => 'cru', 'Ca_01607_v3' => 'car', 'Ca_01677_v3' => 'car', 'Ca_06087_v3' => 'car', 'Ca_19238_v3' => 'car', 'Ca_19373_v3' => 'car', 'Ca_21079_v3' => 'car', 'CBR_g54016' => 'cbr', 'CBR_g54018' => 'cbr', 'CBR_g54020' => 'cbr', 'Cc01_g09780' => 'ccan', 'Cc01_g11680' => 'ccan', 'Cc02_g15610' => 'ccan', 'Cc05_g04350' => 'ccan', 'Cc09_g01580' => 'ccan', 'CDE01G0795' => 'cde', 'CDE02G2024' => 'cde', 'CDE02G2260' => 'cde', 'CDE02G4561' => 'cde', 'CDE05G2733' => 'cde', 'CDE05G3422' => 'cde', 'CDE06G2003' => 'cde', 'CDE08G0576' => 'cde', 'CDE09G0048' => 'cde', 'CDE11G0805' => 'cde', 'Cfa003644' => 'cfa', 'Cfa006290' => 'cfa', 'Cfa010080' => 'cfa', 'Cfa011376' => 'cfa', 'Cfa011576' => 'cfa', 'Cfa011577' => 'cfa', 'Cfa014389' => 'cfa', 'Ciclev10006044m.g' => 'ccl', 'Ciclev10006954m.g' => 'ccl', 'Ciclev10015131m.g' => 'ccl', 'Ciclev10015580m.g' => 'ccl', 'Ciclev10028359m.g' => 'ccl', 'Ciclev10028573m.g' => 'ccl', 'CiPaw.03G159300' => 'cil', 'CiPaw.04G115100' => 'cil', 'CiPaw.09G092800' => 'cil', 'CiPaw.10G071800' => 'cil', 'CiPaw.13G105800' => 'cil', 'CiPaw.13G141000' => 'cil', 'CiPaw.14G103400' => 'cil', 'ClCG01G012700' => 'cla', 'ClCG01G012720' => 'cla', 'ClCG01G021920' => 'cla', 'ClCG02G008870' => 'cla', 'ClCG02G020840' => 'cla', 'ClCG02G021930' => 'cla', 'COL.COLO4_19302' => 'col', 'COL.COLO4_25262' => 'col', 'COL.COLO4_31788' => 'col', 'Cpa.g.c34684' => 'cpa', 'Cpa.g.c36520.1' => 'cpa', 'Cpa.g.c45626' => 'cpa', 'Cpa.g.sc121.17' => 'cpa', 'Cpa.g.sc13.22' => 'cpa', 'Cpa.g.sc87.88' => 'cpa', 'Cre06.g261800' => 'cre', 'CsaV3_1G014500' => 'csa', 'CsaV3_1G014510' => 'csa', 'CsaV3_2G034880' => 'csa', 'CsaV3_6G014760' => 'csa', 'CsaV3_6G021500' => 'csa', 'CsaV3_6G048980' => 'csa', 'CSS0002511' => 'camsi', 'CSS0007556' => 'camsi', 'CSS0008532' => 'camsi', 'CSS0009709' => 'camsi', 'CSS0010486' => 'camsi', 'CSS0016768' => 'camsi', 'CSS0023512' => 'camsi', 'CSS0025341' => 'camsi', 'CSS0027999' => 'camsi', 'CSS0028944' => 'camsi', 'CSS0032292' => 'camsi', 'CSS0032464' => 'camsi', 'CSS0037153' => 'camsi', 'CSS0039256' => 'camsi', 'CSS0048392' => 'camsi', 'CSS0050458' => 'camsi', 'DCAR_004224' => 'dca', 'DCAR_006147' => 'dca', 'DCAR_006465' => 'dca', 'DCAR_008159' => 'dca', 'DCAR_012164' => 'dca', 'DCAR_019764' => 'dca', 'Dinv05418' => 'din', 'Dinv10839' => 'din', 'Dinv12521' => 'din', 'Dinv13900' => 'din', 'Dinv29426' => 'din', 'Duzib150G0263' => 'dzi', 'Duzib168G1178' => 'dzi', 'Duzib168G1924' => 'dzi', 'Duzib170G0299' => 'dzi', 'Duzib170G0813' => 'dzi', 'Duzib235G1128' => 'dzi', 'Duzib248G1060' => 'dzi', 'ECA232G1910' => 'eca', 'ECA233G4621' => 'eca', 'ECA238G1216' => 'eca', 'ECA238G1784' => 'eca', 'ECA248G1242' => 'eca', 'EL10Ac8g20071' => 'bvu', 'EL10Ac9g21086' => 'bvu', 'EL10Ac9g22407' => 'bvu', 'EL10Ac9g22412' => 'bvu', 'Eucgr.A01119' => 'egr', 'Eucgr.E04043' => 'egr', 'Eucgr.J00428' => 'egr', 'Eucgr.J00958' => 'egr', 'FAN11G3091' => 'fan', 'FAN11G3651' => 'fan', 'FAN16G2566' => 'fan', 'FAN21G3155' => 'fan', 'FAN21G3400' => 'fan', 'FAN21G3543' => 'fan', 'FAN25G0234' => 'fan', 'FAN25G1422' => 'fan', 'FAN25G3392' => 'fan', 'FvH4_3g01940' => 'fve', 'FvH4_3g29870' => 'fve', 'FvH4_3g33680' => 'fve', 'Glyma.09G004200' => 'gma', 'Glyma.11G151288' => 'gma', 'Glyma.11G189100' => 'gma', 'Glyma.12G072500' => 'gma', 'Glyma.12G085500' => 'gma', 'Glyma.12G181800' => 'gma', 'Glyma.12G193000' => 'gma', 'Glyma.13G309300' => 'gma', 'Glyma.13G319000' => 'gma', 'Glyma.17G012600' => 'gma', 'Gohir.A06G148600' => 'ghi', 'Gohir.A07G115800' => 'ghi', 'Gohir.A08G003600' => 'ghi', 'Gohir.A09G093300' => 'ghi', 'Gohir.A09G105400' => 'ghi', 'Gohir.A09G105500' => 'ghi', 'Gohir.D06G154600' => 'ghi', 'Gohir.D07G120200' => 'ghi', 'Gohir.D08G013900' => 'ghi', 'Gohir.D09G093100' => 'ghi', 'Gohir.D09G102200' => 'ghi', 'Gohir.D09G102300' => 'ghi', 'Gorai.001G129400' => 'gra', 'Gorai.004G008200' => 'gra', 'Gorai.006G109800' => 'gra', 'Gorai.006G119500' => 'gra', 'Gorai.006G121300' => 'gra', 'Gorai.010G180700' => 'gra', 'GSVIVG01012716001' => 'vvi', 'GSVIVG01025118001' => 'vvi', 'GSVIVG01030439001' => 'vvi', 'GSVIVG01031397001' => 'vvi', 'HanXRQChr01g0004201' => 'han', 'HanXRQChr02g0054941' => 'han', 'HanXRQChr05g0141811' => 'han', 'HanXRQChr07g0197751' => 'han', 'HanXRQChr11g0346691' => 'han', 'HanXRQChr13g0396971' => 'han', 'HanXRQChr14g0432951' => 'han', 'HanXRQChr14g0452001' => 'han', 'HanXRQChr15g0496681' => 'han', 'HanXRQChr17g0557491' => 'han', 'HanXRQChr17g0557501' => 'han', 'Haze_06809' => 'cav', 'Haze_12852' => 'cav', 'Haze_15850' => 'cav', 'Haze_23446' => 'cav', 'Haze_23942' => 'cav', 'Haze_23943' => 'cav', 'Hma1.2p1_0091F.1_g046450' => 'hma', 'Hma1.2p1_0128F.1_g059910' => 'hma', 'Hma1.2p1_0249F.1_g102260' => 'hma', 'Hma1.2p1_0453F.1_g156190' => 'hma', 'Hma1.2p1_0695F.1_g204380' => 'hma', 'Hma1.2p1_0749F.1_g212650' => 'hma', 'Hma1.2p1_2156F.1_g315420' => 'hma', 'Hma1.2p1_2686F.1_g326940' => 'hma', 'HPP92_006428' => 'vpl', 'HPP92_012069' => 'vpl', 'HPP92_014129' => 'vpl', 'HPP92_014133' => 'vpl', 'HPP92_017315' => 'vpl', 'HPP92_026445' => 'vpl', 'HPP92_026446' => 'vpl', 'Hund00774' => 'sun', 'Hund07682' => 'sun', 'Hund21413' => 'sun', 'Hund23462' => 'sun', 'Hund23463' => 'sun', 'Lalb_Chr03g0027911' => 'lal', 'Lalb_Chr13g0304271' => 'lal', 'Lalb_Chr19g0137471' => 'lal', 'Lalb_Chr22g0350651' => 'lal', 'Lalb_Chr24g0395151' => 'lal', 'Lj1A1231T40' => 'lonja', 'Lj1A221T48' => 'lonja', 'Lj1C924T12' => 'lonja', 'Lj2C993G6' => 'lonja', 'Lj3g0005790' => 'lja', 'Lj3g0015432' => 'lja', 'Lj3g0017722' => 'lja', 'Lj3g0018497' => 'lja', 'Lj4g0025071' => 'lja', 'Lsat_1_v5_gn_1_129680' => 'lsa', 'Lsat_1_v5_gn_2_25321' => 'lsa', 'Lsat_1_v5_gn_2_95461' => 'lsa', 'Lsat_1_v5_gn_4_159620' => 'lsa', 'Lsat_1_v5_gn_6_41301' => 'lsa', 'Lsat_1_v5_gn_6_74660' => 'lsa', 'Lsat_1_v5_gn_7_11520' => 'lsa', 'Lsat_1_v5_gn_9_67680' => 'lsa', 'Manes.04G008300' => 'mes', 'Manes.04G008400' => 'mes', 'Manes.04G026500' => 'mes', 'Manes.10G135300' => 'mes', 'Manes.11G157300' => 'mes', 'Manes.12G074000' => 'mes', 'Manes.16G006200' => 'mes', 'Manes.17G026400' => 'mes', 'Mapoly0024s0086' => 'mpo', 'Mapoly0024s0087' => 'mpo', 'Mapoly0071s0057' => 'mpo', 'Mapoly0204s0012' => 'mpo', 'MBI04_g37681_MAGBIO' => 'mbi', 'MBI05_g17779_MAGBIO' => 'mbi', 'MBI12_g31184_MAGBIO' => 'mbi', 'MBI17_g11083_MAGBIO' => 'mbi', 'MBI18_g03883_MAGBIO' => 'mbi', 'MBI18_g28940_MAGBIO' => 'mbi', 'MCO01G690' => 'mco', 'MD03G1109900' => 'mdo', 'MD03G1134800' => 'mdo', 'MD05G1348000' => 'mdo', 'MD10G1322400' => 'mdo', 'MD11G1123300' => 'mdo', 'MD11G1157600' => 'mdo', 'Medtr2g084875' => 'mtr', 'Medtr2g088130' => 'mtr', 'Medtr4g055310' => 'mtr', 'Medtr4g061070' => 'mtr', 'Medtr4g132250' => 'mtr', 'MELO3C004795.2' => 'cme', 'MELO3C004797.2' => 'cme', 'MELO3C007396.2' => 'cme', 'MELO3C019277.2' => 'cme', 'MELO3C021449.2' => 'cme', 'MELO3C025736.2' => 'cme', 'Migut.D02175' => 'egut', 'Migut.H01573' => 'egut', 'Migut.M01327' => 'egut', 'Migut.N02513' => 'egut', 'MSTRG.14638' => 'ama', 'MSTRG.18632' => 'ama', 'MSTRG.7203' => 'ama', 'Nitab4.5_0000533g0140' => 'nta', 'Nitab4.5_0000888g0150' => 'nta', 'Nitab4.5_0001453g0040' => 'nta', 'Nitab4.5_0002827g0090' => 'nta', 'Nitab4.5_0003082g0040' => 'nta', 'Nitab4.5_0007799g0040' => 'nta', 'Nitab4.5_0008983g0010' => 'nta', 'Nitab4.5_0009017g0020' => 'nta', 'Nn1g02132' => 'nnu', 'Nn1g03492' => 'nnu', 'Nn1g03493' => 'nnu', 'Nn1g03494' => 'nnu', 'Nn1g07164' => 'nnu', 'Nn1g07291' => 'nnu', 'Nn2g10655' => 'nnu', 'Nn2g11652' => 'nnu', 'Nn2g14008' => 'nnu', 'Nn3g17476' => 'nnu', 'Nn3g17477' => 'nnu', 'Nn4g22370' => 'nnu', 'Nn4g25255' => 'nnu', 'Nn5g27755' => 'nnu', 'Nn6g34260' => 'nnu', 'Nn6g35041' => 'nnu', 'Oeu005924.1' => 'oeu', 'Oeu008383.1' => 'oeu', 'Oeu014928.1' => 'oeu', 'Oeu019889.1' => 'oeu', 'Oeu022271.1' => 'oeu', 'Oeu025271.1' => 'oeu', 'Oeu036302.1' => 'oeu', 'Oeu044100.1' => 'oeu', 'Os01g0528300' => 'osa', 'Os03g0286200' => 'osa', 'Os04g0406600' => 'osa', 'Os07g0512000' => 'osa', 'Os07g0694600' => 'osa', 'Os08g0411000' => 'osa', 'Os09g0565700' => 'osa', 'Os09g0566050' => 'osa', 'Os10g0523700' => 'osa', 'Peaxi162Scf00002g00514' => 'pax', 'Peaxi162Scf00047g01817' => 'pax', 'Peaxi162Scf00114g00001' => 'pax', 'Peaxi162Scf00147g00613' => 'pax', 'Peaxi162Scf00389g00425' => 'pax', 'PGR042G1139' => 'pgr', 'PGR042G3273' => 'pgr', 'PGR102G2180' => 'pgr', 'PGR119G0234' => 'pgr', 'PGR119G0668' => 'pgr', 'PGSC0003DMG400007122' => 'stu', 'PGSC0003DMG400016478' => 'stu', 'PGSC0003DMG400025374' => 'stu', 'PGSC0003DMG400026536' => 'stu', 'Phvul.003G079600' => 'pvu', 'Phvul.005G115600' => 'pvu', 'Phvul.005G127100' => 'pvu', 'Phvul.006G149500' => 'pvu', 'Phvul.006G149600' => 'pvu', 'Phvul.011G071800' => 'pvu', 'Phvul.011G090400' => 'pvu', 'Potri.004G013400' => 'ptr', 'Potri.004G188100' => 'ptr', 'Potri.008G195500' => 'ptr', 'Potri.009G148800' => 'ptr', 'Potri.011G004700' => 'ptr', 'Pp3c17_22810' => 'ppa', 'Pp3c18_4480' => 'ppa', 'Pp3c19_13030' => 'ppa', 'Pp3c1_33620' => 'ppa', 'Pp3c2_9380' => 'ppa', 'PRCOL_00001023' => 'pco', 'Prupe.3G216300' => 'ppe', 'Prupe.4G019500' => 'ppe', 'Prupe.6G092500' => 'ppe', 'Prupe.6G119200' => 'ppe', 'Psat0s1945g0080' => 'psa', 'Psat0s4167g0040' => 'psa', 'Psat1g185800' => 'psa', 'Psat4g006440' => 'psa', 'Psat4g006480' => 'psa', 'Psat4g168120' => 'psa', 'Psat5g255680' => 'psa', 'Psat5g261760' => 'psa', 'Psat7g222120' => 'psa', 'PSO063G7252' => 'pso', 'PSO170G4778' => 'pso', 'PSO210G2249' => 'pso', 'PSO339G2411' => 'pso', 'PSO339G2457' => 'pso', 'PSO339G2854' => 'pso', 'PSO339G4288' => 'pso', 'PSO339G4615' => 'pso', 'PSO384G2796' => 'pso', 'PSO384G2940' => 'pso', 'PSO384G4227' => 'pso', 'PSO478G1425' => 'pso', 'PSO541G3863' => 'pso', 'PSO675G0507' => 'pso', 'PSO782G0338' => 'pso', 'PSO832G0644' => 'pso', 'QL01p013664' => 'qlo', 'QL01p036598' => 'qlo', 'QL05p072984' => 'qlo', 'QL08p005768' => 'qlo', 'QL08p032743' => 'qlo', 'QL93p0073_0439' => 'qlo', 'QL93p0073_0444' => 'qlo', 'RcHm_v2.0_Chr5g0002851' => 'rch', 'RcHm_v2.0_Chr5g0055201' => 'rch', 'RcHm_v2.0_Chr5g0061191' => 'rch', 'RcHm_v2.0_Chr7g0203231' => 'rch', 'Rhsim01G0208100' => 'rsi', 'Rhsim01G0208200' => 'rsi', 'Rhsim02G0106500' => 'rsi', 'Rhsim03G0107900' => 'rsi', 'Rhsim06G0163400' => 'rsi', 'Rhsim13G0105200' => 'rsi', 'Sabra04G0006300' => 'sbr', 'Sabra04G0127000' => 'sbr', 'Sabra08G0148700' => 'sbr', 'Sabra09G0117400' => 'sbr', 'SalBow1G3326' => 'sbo', 'SalBow3G3228' => 'sbo', 'SalBow6G1634' => 'sbo', 'SalBow6G3603' => 'sbo', 'SalBow6G5266' => 'sbo', 'SalBow7G2265' => 'sbo', 'SalBow8G0850' => 'sbo', 'SalBow8G2592' => 'sbo', 'Sc05g0009240' => 'sci', 'Sc12g0002300' => 'sci', 'Sc21g0000100' => 'sci', 'Sc21g0004720' => 'sci', 'Sed0002949' => 'sed', 'Sed0004114' => 'sed', 'Sed0004306' => 'sed', 'Sed0006172' => 'sed', 'Sed0008413' => 'sed', 'Sed0013809' => 'sed', 'Sed0019556' => 'sed', 'SEGI_03570' => 'sgi', 'SEGI_07859' => 'sgi', 'SEGI_15042' => 'sgi', 'SEGI_16263' => 'sgi', 'SEGI_16552' => 'sgi', 'SEGI_24331' => 'sgi', 'SEGI_27316' => 'sgi', 'SEGI_29521' => 'sgi', 'SEGI_41342' => 'sgi', 'SGA_v2.0_scaffold27G11617' => 'sas', 'SGA_v2.0_scaffold316G48428' => 'sas', 'SGA_v2.0_scaffold49G18261' => 'sas', 'SGA_v2.0_scaffold7G03831' => 'sas', 'SGA_v2.0_scaffold93G28359' => 'sas', 'SHI02210' => 'shi', 'SHI06028' => 'shi', 'SHI06321' => 'shi', 'SMO111G0012' => 'smo', 'SMO228G0080' => 'smo', 'SMO356G0756' => 'smo', 'Solyc02g080620.3' => 'sly', 'Solyc06g074530.1' => 'sly', 'Solyc11g066890.1' => 'sly', 'Solyc11g072520.3' => 'sly', 'Sopen02g025330' => 'spe', 'Sopen06g031000' => 'spe', 'Sopen09g008240' => 'spe', 'Sopen09g025210' => 'spe', 'Sopen11g026600' => 'spe', 'Sopen11g030170' => 'spe', 'Sp1g10420' => 'spa', 'Sp3g06570' => 'spa', 'Sp4g10660' => 'spa', 'Sp5g16460' => 'spa', 'Sp6g22710' => 'spa', 'TAR365G0112' => 'tar', 'TAR369G0717' => 'tar', 'TAR374G0976' => 'tar', 'TAR623G1128' => 'tar', 'TAR626G1937' => 'tar', 'TAR627G0123' => 'tar', 'TAR628G0305' => 'tar', 'TAR636G1176' => 'tar', 'TAR636G2442' => 'tar', 'THA.LOC104800556' => 'tha', 'THA.LOC104809501' => 'tha', 'THA.LOC104815126' => 'tha', 'THA.LOC104815732' => 'tha', 'THA.LOC104823528' => 'tha', 'Thecc.02G365600' => 'tca', 'Thecc.06G222300' => 'tca', 'Thecc.09G261800' => 'tca', 'Thecc.09G291400' => 'tca', 'Thhalv10003028m.g' => 'esa', 'Thhalv10007886m.g' => 'esa', 'Thhalv10016085m.g' => 'esa', 'Thhalv10016681m.g' => 'esa', 'Thhalv10020951m.g' => 'esa', 'TPR.G15598' => 'tpr', 'TPR.G29305' => 'tpr', 'TPR.G32395' => 'tpr', 'TPR.G36998' => 'tpr', 'TPR.G4227' => 'tpr', 'TWI18G1433' => 'twi', 'TWI31G0755' => 'twi', 'TWI38G0912' => 'twi', 'TWI75G1097' => 'twi', 'TWI75G1619' => 'twi', 'TWI79G1336' => 'twi', 'unitig_0.g943' => 'ugi', 'unitig_0.g944' => 'ugi', 'unitig_22.g6646' => 'ugi', 'unitig_37.g12681' => 'ugi', 'unitig_8.g3290' => 'ugi', 'vmacro03278' => 'vma', 'vmacro12197' => 'vma', 'vmacro14478' => 'vma', 'vmacro15787' => 'vma', 'vmacro15789' => 'vma', 'vmacro15790' => 'vma', 'vmacro15806' => 'vma', 'vmacro22907' => 'vma', 'vmacro22908' => 'vma', 'vmacro22909' => 'vma', 'vmacro23108' => 'vma', 'VMungo0540G0540' => 'vmu', 'VMungo0540G2468' => 'vmu', 'VMungo1080G0390' => 'vmu', 'VMungo1080G1165' => 'vmu', 'VMungo1127G0170' => 'vmu', 'VMungo1127G2099' => 'vmu', 'VMungo1215G3013' => 'vmu', 'Zm00001eb013110' => 'zma', 'Zm00001eb084260' => 'zma', 'Zm00001eb096110' => 'zma', 'Zm00001eb217510' => 'zma', 'Zm00001eb322550' => 'zma', 'Zm00001eb390770' => 'zma', 'Zm00001eb397170' => 'zma', 'Zm00001eb404610' => 'zma', 'Zm00001eb421790' => 'zma' ), 'gf_id' => 'HOM05D000911', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000911' ), 'data_identifier' => 'HOM05D000911', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000911', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27780' => 'bna', 'A03p35380' => 'bna', 'A04p21160' => 'bna', 'A05p40570' => 'bna', 'A06p26900' => 'bna', 'A08p33230' => 'bna', 'A09p65960' => 'bna', 'A10p18290' => 'bna', 'Aa31LG1G12990' => 'aar', 'Aa31LG1G2980' => 'aar', 'Aa31LG4G14320' => 'aar', 'Aa31LG7G11800' => 'aar', 'Aa31sc36G50' => 'aar', 'Aa31sc36G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3721' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5459' => 'aag', 'Actinidia03028' => 'ach', 'Actinidia03753' => 'ach', 'Actinidia04187' => 'ach', 'Actinidia05509' => 'ach', 'Actinidia24180' => 'ach', 'Actinidia26906' => 'ach', 'Actinidia37097' => 'ach', 'Actinidia38249' => 'ach', 'Ah.01g003470' => 'amhyb', 'Ah.01g004580' => 'amhyb', 'Ah.01g014850' => 'amhyb', 'Ah.01g016830' => 'amhyb', 'Ah.14g088000' => 'amhyb', 'AL1G22980' => 'aly', 'AL3G18990' => 'aly', 'AL4G22440' => 'aly', 'AL4G33180' => 'aly', 'AL5G22920' => 'aly', 'AL6G33660' => 'aly', 'AL8G20720' => 'aly', 'Aqoxy1G00935' => 'aox', 'Aqoxy1G02094' => 'aox', 'Aqoxy2G01239' => 'aox', 'Aqoxy4G01870' => 'aox', 'Aqoxy7G00450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.36ZVTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71EM27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5D6C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH3WRE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3NCM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RIM768' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YB5YRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z36GDV' => 'arhy', 'AT1G08250' => 'ath', 'AT1G11790' => 'ath', 'AT2G27820' => 'ath', 'AT3G07630' => 'ath', 'AT3G44720' => 'ath', 'AT5G22630' => 'ath', 'ATR0693G304' => 'atr', 'ATR0794G109' => 'atr', 'ATR0820G120' => 'atr', 'ATR1159G064' => 'atr', 'Atru.chr10.2239' => 'acertr', 'Atru.chr3.3371' => 'acertr', 'Atru.chr6.3202' => 'acertr', 'AUR62006499' => 'cqu', 'AUR62012718' => 'cqu', 'AUR62021938' => 'cqu', 'AUR62023932' => 'cqu', 'AUR62025034' => 'cqu', 'AUR62025035' => 'cqu', 'AUR62038307' => 'cqu', 'AUR62043466' => 'cqu', 'BcaB02g10748' => 'bca', 'BcaB03g13231' => 'bca', 'BcaB03g14689' => 'bca', 'BcaB05g22716' => 'bca', 'BcaB06g28172' => 'bca', 'BcaB08g36413' => 'bca', 'BcaC01g02186' => 'bca', 'BcaC01g04272' => 'bca', 'BcaC02g08080' => 'bca', 'BcaC02g08227' => 'bca', 'BcaC03g13901' => 'bca', 'BcaC04g19593' => 'bca', 'BcaC04g20874' => 'bca', 'BcaC05g29557' => 'bca', 'BcaC06g35505' => 'bca', 'BcaC07g41954' => 'bca', 'BcaC07g41955' => 'bca', 'BcaC07g41956' => 'bca', 'BcaC07g42519' => 'bca', 'BcaC07g42520' => 'bca', 'BcaC07g42523' => 'bca', 'BcaC07g42524' => 'bca', 'BcaC07g42525' => 'bca', 'BcaC08g47480' => 'bca', 'BcaC08g47481' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00530' => 'bna', 'BolC2t07178H' => 'bol', 'BolC3t16567H' => 'bol', 'BolC4t27234H' => 'bol', 'BolC5t29728H' => 'bol', 'BolC5t34622H' => 'bol', 'BolC6t40321H' => 'bol', 'BolC7t42028H' => 'bol', 'BolC8t49125H' => 'bol', 'BolC8t52538H' => 'bol', 'BolC8t52539H' => 'bol', 'BolC9t56681H' => 'bol', 'BolC9t58266H' => 'bol', 'BolSC21t60294H' => 'bol', 'BraA02t05670Z' => 'bra', 'BraA03t12716Z' => 'bra', 'BraA04t17685Z' => 'bra', 'BraA05t22788Z' => 'bra', 'BraA06t24032Z' => 'bra', 'BraA06t25625Z' => 'bra', 'BraA07t27930Z' => 'bra', 'BraA08t35242Z' => 'bra', 'BraA09t38609Z' => 'bra', 'BraA10t43905Z' => 'bra', 'C02p11060' => 'bna', 'C03p42990' => 'bna', 'C03p67310' => 'bna', 'C04p56990' => 'bna', 'C04p58660' => 'bna', 'C05p09890' => 'bna', 'C05p59680' => 'bna', 'C06p19830' => 'bna', 'C06p53040' => 'bna', 'C07p15230' => 'bna', 'C08p50070' => 'bna', 'C08p50090' => 'bna', 'C09p38330' => 'bna', 'C09p53940' => 'bna', 'CAN.G1014.1' => 'can', 'CAN.G644.30' => 'can', 'CAN.G84.47' => 'can', 'CAN.G919.8' => 'can', 'CANSAT54G0113' => 'cansat', 'CANSAT54G1286' => 'cansat', 'CANSAT64G1020' => 'cansat', 'CARHR008080' => 'chi', 'CARHR008090' => 'chi', 'CARHR012130' => 'chi', 'CARHR038390' => 'chi', 'CARHR082330' => 'chi', 'CARHR120520' => 'chi', 'CARHR151470' => 'chi', 'CARHR190950' => 'chi', 'Carub.0001s0760' => 'cru', 'Carub.0001s1146' => 'cru', 'Carub.0003s0721' => 'cru', 'Carub.0004s0858' => 'cru', 'Carub.0005s1040' => 'cru', 'Carub.0006s2035' => 'cru', 'Carub.0015s0005' => 'cru', 'Ca_01607_v3' => 'car', 'Ca_01677_v3' => 'car', 'Ca_06087_v3' => 'car', 'Ca_19238_v3' => 'car', 'Ca_19373_v3' => 'car', 'Ca_21079_v3' => 'car', 'CBR_g54016' => 'cbr', 'CBR_g54018' => 'cbr', 'CBR_g54020' => 'cbr', 'Cc01_g09780' => 'ccan', 'Cc01_g11680' => 'ccan', 'Cc02_g15610' => 'ccan', 'Cc05_g04350' => 'ccan', 'Cc09_g01580' => 'ccan', 'CDE01G0795' => 'cde', 'CDE02G2024' => 'cde', 'CDE02G2260' => 'cde', 'CDE02G4561' => 'cde', 'CDE05G2733' => 'cde', 'CDE05G3422' => 'cde', 'CDE06G2003' => 'cde', 'CDE08G0576' => 'cde', 'CDE09G0048' => 'cde', 'CDE11G0805' => 'cde', 'Cfa003644' => 'cfa', 'Cfa006290' => 'cfa', 'Cfa010080' => 'cfa', 'Cfa011376' => 'cfa', 'Cfa011576' => 'cfa', 'Cfa011577' => 'cfa', 'Cfa014389' => 'cfa', 'Ciclev10006044m.g' => 'ccl', 'Ciclev10006954m.g' => 'ccl', 'Ciclev10015131m.g' => 'ccl', 'Ciclev10015580m.g' => 'ccl', 'Ciclev10028359m.g' => 'ccl', 'Ciclev10028573m.g' => 'ccl', 'CiPaw.03G159300' => 'cil', 'CiPaw.04G115100' => 'cil', 'CiPaw.09G092800' => 'cil', 'CiPaw.10G071800' => 'cil', 'CiPaw.13G105800' => 'cil', 'CiPaw.13G141000' => 'cil', 'CiPaw.14G103400' => 'cil', 'ClCG01G012700' => 'cla', 'ClCG01G012720' => 'cla', 'ClCG01G021920' => 'cla', 'ClCG02G008870' => 'cla', 'ClCG02G020840' => 'cla', 'ClCG02G021930' => 'cla', 'COL.COLO4_19302' => 'col', 'COL.COLO4_25262' => 'col', 'COL.COLO4_31788' => 'col', 'Cpa.g.c34684' => 'cpa', 'Cpa.g.c36520.1' => 'cpa', 'Cpa.g.c45626' => 'cpa', 'Cpa.g.sc121.17' => 'cpa', 'Cpa.g.sc13.22' => 'cpa', 'Cpa.g.sc87.88' => 'cpa', 'Cre06.g261800' => 'cre', 'CsaV3_1G014500' => 'csa', 'CsaV3_1G014510' => 'csa', 'CsaV3_2G034880' => 'csa', 'CsaV3_6G014760' => 'csa', 'CsaV3_6G021500' => 'csa', 'CsaV3_6G048980' => 'csa', 'CSS0002511' => 'camsi', 'CSS0007556' => 'camsi', 'CSS0008532' => 'camsi', 'CSS0009709' => 'camsi', 'CSS0010486' => 'camsi', 'CSS0016768' => 'camsi', 'CSS0023512' => 'camsi', 'CSS0025341' => 'camsi', 'CSS0027999' => 'camsi', 'CSS0028944' => 'camsi', 'CSS0032292' => 'camsi', 'CSS0032464' => 'camsi', 'CSS0037153' => 'camsi', 'CSS0039256' => 'camsi', 'CSS0048392' => 'camsi', 'CSS0050458' => 'camsi', 'DCAR_004224' => 'dca', 'DCAR_006147' => 'dca', 'DCAR_006465' => 'dca', 'DCAR_008159' => 'dca', 'DCAR_012164' => 'dca', 'DCAR_019764' => 'dca', 'Dinv05418' => 'din', 'Dinv10839' => 'din', 'Dinv12521' => 'din', 'Dinv13900' => 'din', 'Dinv29426' => 'din', 'Duzib150G0263' => 'dzi', 'Duzib168G1178' => 'dzi', 'Duzib168G1924' => 'dzi', 'Duzib170G0299' => 'dzi', 'Duzib170G0813' => 'dzi', 'Duzib235G1128' => 'dzi', 'Duzib248G1060' => 'dzi', 'ECA232G1910' => 'eca', 'ECA233G4621' => 'eca', 'ECA238G1216' => 'eca', 'ECA238G1784' => 'eca', 'ECA248G1242' => 'eca', 'EL10Ac8g20071' => 'bvu', 'EL10Ac9g21086' => 'bvu', 'EL10Ac9g22407' => 'bvu', 'EL10Ac9g22412' => 'bvu', 'Eucgr.A01119' => 'egr', 'Eucgr.E04043' => 'egr', 'Eucgr.J00428' => 'egr', 'Eucgr.J00958' => 'egr', 'FAN11G3091' => 'fan', 'FAN11G3651' => 'fan', 'FAN16G2566' => 'fan', 'FAN21G3155' => 'fan', 'FAN21G3400' => 'fan', 'FAN21G3543' => 'fan', 'FAN25G0234' => 'fan', 'FAN25G1422' => 'fan', 'FAN25G3392' => 'fan', 'FvH4_3g01940' => 'fve', 'FvH4_3g29870' => 'fve', 'FvH4_3g33680' => 'fve', 'Glyma.09G004200' => 'gma', 'Glyma.11G151288' => 'gma', 'Glyma.11G189100' => 'gma', 'Glyma.12G072500' => 'gma', 'Glyma.12G085500' => 'gma', 'Glyma.12G181800' => 'gma', 'Glyma.12G193000' => 'gma', 'Glyma.13G309300' => 'gma', 'Glyma.13G319000' => 'gma', 'Glyma.17G012600' => 'gma', 'Gohir.A06G148600' => 'ghi', 'Gohir.A07G115800' => 'ghi', 'Gohir.A08G003600' => 'ghi', 'Gohir.A09G093300' => 'ghi', 'Gohir.A09G105400' => 'ghi', 'Gohir.A09G105500' => 'ghi', 'Gohir.D06G154600' => 'ghi', 'Gohir.D07G120200' => 'ghi', 'Gohir.D08G013900' => 'ghi', 'Gohir.D09G093100' => 'ghi', 'Gohir.D09G102200' => 'ghi', 'Gohir.D09G102300' => 'ghi', 'Gorai.001G129400' => 'gra', 'Gorai.004G008200' => 'gra', 'Gorai.006G109800' => 'gra', 'Gorai.006G119500' => 'gra', 'Gorai.006G121300' => 'gra', 'Gorai.010G180700' => 'gra', 'GSVIVG01012716001' => 'vvi', 'GSVIVG01025118001' => 'vvi', 'GSVIVG01030439001' => 'vvi', 'GSVIVG01031397001' => 'vvi', 'HanXRQChr01g0004201' => 'han', 'HanXRQChr02g0054941' => 'han', 'HanXRQChr05g0141811' => 'han', 'HanXRQChr07g0197751' => 'han', 'HanXRQChr11g0346691' => 'han', 'HanXRQChr13g0396971' => 'han', 'HanXRQChr14g0432951' => 'han', 'HanXRQChr14g0452001' => 'han', 'HanXRQChr15g0496681' => 'han', 'HanXRQChr17g0557491' => 'han', 'HanXRQChr17g0557501' => 'han', 'Haze_06809' => 'cav', 'Haze_12852' => 'cav', 'Haze_15850' => 'cav', 'Haze_23446' => 'cav', 'Haze_23942' => 'cav', 'Haze_23943' => 'cav', 'Hma1.2p1_0091F.1_g046450' => 'hma', 'Hma1.2p1_0128F.1_g059910' => 'hma', 'Hma1.2p1_0249F.1_g102260' => 'hma', 'Hma1.2p1_0453F.1_g156190' => 'hma', 'Hma1.2p1_0695F.1_g204380' => 'hma', 'Hma1.2p1_0749F.1_g212650' => 'hma', 'Hma1.2p1_2156F.1_g315420' => 'hma', 'Hma1.2p1_2686F.1_g326940' => 'hma', 'HPP92_006428' => 'vpl', 'HPP92_012069' => 'vpl', 'HPP92_014129' => 'vpl', 'HPP92_014133' => 'vpl', 'HPP92_017315' => 'vpl', 'HPP92_026445' => 'vpl', 'HPP92_026446' => 'vpl', 'Hund00774' => 'sun', 'Hund07682' => 'sun', 'Hund21413' => 'sun', 'Hund23462' => 'sun', 'Hund23463' => 'sun', 'Lalb_Chr03g0027911' => 'lal', 'Lalb_Chr13g0304271' => 'lal', 'Lalb_Chr19g0137471' => 'lal', 'Lalb_Chr22g0350651' => 'lal', 'Lalb_Chr24g0395151' => 'lal', 'Lj1A1231T40' => 'lonja', 'Lj1A221T48' => 'lonja', 'Lj1C924T12' => 'lonja', 'Lj2C993G6' => 'lonja', 'Lj3g0005790' => 'lja', 'Lj3g0015432' => 'lja', 'Lj3g0017722' => 'lja', 'Lj3g0018497' => 'lja', 'Lj4g0025071' => 'lja', 'Lsat_1_v5_gn_1_129680' => 'lsa', 'Lsat_1_v5_gn_2_25321' => 'lsa', 'Lsat_1_v5_gn_2_95461' => 'lsa', 'Lsat_1_v5_gn_4_159620' => 'lsa', 'Lsat_1_v5_gn_6_41301' => 'lsa', 'Lsat_1_v5_gn_6_74660' => 'lsa', 'Lsat_1_v5_gn_7_11520' => 'lsa', 'Lsat_1_v5_gn_9_67680' => 'lsa', 'Manes.04G008300' => 'mes', 'Manes.04G008400' => 'mes', 'Manes.04G026500' => 'mes', 'Manes.10G135300' => 'mes', 'Manes.11G157300' => 'mes', 'Manes.12G074000' => 'mes', 'Manes.16G006200' => 'mes', 'Manes.17G026400' => 'mes', 'Mapoly0024s0086' => 'mpo', 'Mapoly0024s0087' => 'mpo', 'Mapoly0071s0057' => 'mpo', 'Mapoly0204s0012' => 'mpo', 'MBI04_g37681_MAGBIO' => 'mbi', 'MBI05_g17779_MAGBIO' => 'mbi', 'MBI12_g31184_MAGBIO' => 'mbi', 'MBI17_g11083_MAGBIO' => 'mbi', 'MBI18_g03883_MAGBIO' => 'mbi', 'MBI18_g28940_MAGBIO' => 'mbi', 'MCO01G690' => 'mco', 'MD03G1109900' => 'mdo', 'MD03G1134800' => 'mdo', 'MD05G1348000' => 'mdo', 'MD10G1322400' => 'mdo', 'MD11G1123300' => 'mdo', 'MD11G1157600' => 'mdo', 'Medtr2g084875' => 'mtr', 'Medtr2g088130' => 'mtr', 'Medtr4g055310' => 'mtr', 'Medtr4g061070' => 'mtr', 'Medtr4g132250' => 'mtr', 'MELO3C004795.2' => 'cme', 'MELO3C004797.2' => 'cme', 'MELO3C007396.2' => 'cme', 'MELO3C019277.2' => 'cme', 'MELO3C021449.2' => 'cme', 'MELO3C025736.2' => 'cme', 'Migut.D02175' => 'egut', 'Migut.H01573' => 'egut', 'Migut.M01327' => 'egut', 'Migut.N02513' => 'egut', 'MSTRG.14638' => 'ama', 'MSTRG.18632' => 'ama', 'MSTRG.7203' => 'ama', 'Nitab4.5_0000533g0140' => 'nta', 'Nitab4.5_0000888g0150' => 'nta', 'Nitab4.5_0001453g0040' => 'nta', 'Nitab4.5_0002827g0090' => 'nta', 'Nitab4.5_0003082g0040' => 'nta', 'Nitab4.5_0007799g0040' => 'nta', 'Nitab4.5_0008983g0010' => 'nta', 'Nitab4.5_0009017g0020' => 'nta', 'Nn1g02132' => 'nnu', 'Nn1g03492' => 'nnu', 'Nn1g03493' => 'nnu', 'Nn1g03494' => 'nnu', 'Nn1g07164' => 'nnu', 'Nn1g07291' => 'nnu', 'Nn2g10655' => 'nnu', 'Nn2g11652' => 'nnu', 'Nn2g14008' => 'nnu', 'Nn3g17476' => 'nnu', 'Nn3g17477' => 'nnu', 'Nn4g22370' => 'nnu', 'Nn4g25255' => 'nnu', 'Nn5g27755' => 'nnu', 'Nn6g34260' => 'nnu', 'Nn6g35041' => 'nnu', 'Oeu005924.1' => 'oeu', 'Oeu008383.1' => 'oeu', 'Oeu014928.1' => 'oeu', 'Oeu019889.1' => 'oeu', 'Oeu022271.1' => 'oeu', 'Oeu025271.1' => 'oeu', 'Oeu036302.1' => 'oeu', 'Oeu044100.1' => 'oeu', 'Os01g0528300' => 'osa', 'Os03g0286200' => 'osa', 'Os04g0406600' => 'osa', 'Os07g0512000' => 'osa', 'Os07g0694600' => 'osa', 'Os08g0411000' => 'osa', 'Os09g0565700' => 'osa', 'Os09g0566050' => 'osa', 'Os10g0523700' => 'osa', 'Peaxi162Scf00002g00514' => 'pax', 'Peaxi162Scf00047g01817' => 'pax', 'Peaxi162Scf00114g00001' => 'pax', 'Peaxi162Scf00147g00613' => 'pax', 'Peaxi162Scf00389g00425' => 'pax', 'PGR042G1139' => 'pgr', 'PGR042G3273' => 'pgr', 'PGR102G2180' => 'pgr', 'PGR119G0234' => 'pgr', 'PGR119G0668' => 'pgr', 'PGSC0003DMG400007122' => 'stu', 'PGSC0003DMG400016478' => 'stu', 'PGSC0003DMG400025374' => 'stu', 'PGSC0003DMG400026536' => 'stu', 'Phvul.003G079600' => 'pvu', 'Phvul.005G115600' => 'pvu', 'Phvul.005G127100' => 'pvu', 'Phvul.006G149500' => 'pvu', 'Phvul.006G149600' => 'pvu', 'Phvul.011G071800' => 'pvu', 'Phvul.011G090400' => 'pvu', 'Potri.004G013400' => 'ptr', 'Potri.004G188100' => 'ptr', 'Potri.008G195500' => 'ptr', 'Potri.009G148800' => 'ptr', 'Potri.011G004700' => 'ptr', 'Pp3c17_22810' => 'ppa', 'Pp3c18_4480' => 'ppa', 'Pp3c19_13030' => 'ppa', 'Pp3c1_33620' => 'ppa', 'Pp3c2_9380' => 'ppa', 'PRCOL_00001023' => 'pco', 'Prupe.3G216300' => 'ppe', 'Prupe.4G019500' => 'ppe', 'Prupe.6G092500' => 'ppe', 'Prupe.6G119200' => 'ppe', 'Psat0s1945g0080' => 'psa', 'Psat0s4167g0040' => 'psa', 'Psat1g185800' => 'psa', 'Psat4g006440' => 'psa', 'Psat4g006480' => 'psa', 'Psat4g168120' => 'psa', 'Psat5g255680' => 'psa', 'Psat5g261760' => 'psa', 'Psat7g222120' => 'psa', 'PSO063G7252' => 'pso', 'PSO170G4778' => 'pso', 'PSO210G2249' => 'pso', 'PSO339G2411' => 'pso', 'PSO339G2457' => 'pso', 'PSO339G2854' => 'pso', 'PSO339G4288' => 'pso', 'PSO339G4615' => 'pso', 'PSO384G2796' => 'pso', 'PSO384G2940' => 'pso', 'PSO384G4227' => 'pso', 'PSO478G1425' => 'pso', 'PSO541G3863' => 'pso', 'PSO675G0507' => 'pso', 'PSO782G0338' => 'pso', 'PSO832G0644' => 'pso', 'QL01p013664' => 'qlo', 'QL01p036598' => 'qlo', 'QL05p072984' => 'qlo', 'QL08p005768' => 'qlo', 'QL08p032743' => 'qlo', 'QL93p0073_0439' => 'qlo', 'QL93p0073_0444' => 'qlo', 'RcHm_v2.0_Chr5g0002851' => 'rch', 'RcHm_v2.0_Chr5g0055201' => 'rch', 'RcHm_v2.0_Chr5g0061191' => 'rch', 'RcHm_v2.0_Chr7g0203231' => 'rch', 'Rhsim01G0208100' => 'rsi', 'Rhsim01G0208200' => 'rsi', 'Rhsim02G0106500' => 'rsi', 'Rhsim03G0107900' => 'rsi', 'Rhsim06G0163400' => 'rsi', 'Rhsim13G0105200' => 'rsi', 'Sabra04G0006300' => 'sbr', 'Sabra04G0127000' => 'sbr', 'Sabra08G0148700' => 'sbr', 'Sabra09G0117400' => 'sbr', 'SalBow1G3326' => 'sbo', 'SalBow3G3228' => 'sbo', 'SalBow6G1634' => 'sbo', 'SalBow6G3603' => 'sbo', 'SalBow6G5266' => 'sbo', 'SalBow7G2265' => 'sbo', 'SalBow8G0850' => 'sbo', 'SalBow8G2592' => 'sbo', 'Sc05g0009240' => 'sci', 'Sc12g0002300' => 'sci', 'Sc21g0000100' => 'sci', 'Sc21g0004720' => 'sci', 'Sed0002949' => 'sed', 'Sed0004114' => 'sed', 'Sed0004306' => 'sed', 'Sed0006172' => 'sed', 'Sed0008413' => 'sed', 'Sed0013809' => 'sed', 'Sed0019556' => 'sed', 'SEGI_03570' => 'sgi', 'SEGI_07859' => 'sgi', 'SEGI_15042' => 'sgi', 'SEGI_16263' => 'sgi', 'SEGI_16552' => 'sgi', 'SEGI_24331' => 'sgi', 'SEGI_27316' => 'sgi', 'SEGI_29521' => 'sgi', 'SEGI_41342' => 'sgi', 'SGA_v2.0_scaffold27G11617' => 'sas', 'SGA_v2.0_scaffold316G48428' => 'sas', 'SGA_v2.0_scaffold49G18261' => 'sas', 'SGA_v2.0_scaffold7G03831' => 'sas', 'SGA_v2.0_scaffold93G28359' => 'sas', 'SHI02210' => 'shi', 'SHI06028' => 'shi', 'SHI06321' => 'shi', 'SMO111G0012' => 'smo', 'SMO228G0080' => 'smo', 'SMO356G0756' => 'smo', 'Solyc02g080620.3' => 'sly', 'Solyc06g074530.1' => 'sly', 'Solyc11g066890.1' => 'sly', 'Solyc11g072520.3' => 'sly', 'Sopen02g025330' => 'spe', 'Sopen06g031000' => 'spe', 'Sopen09g008240' => 'spe', 'Sopen09g025210' => 'spe', 'Sopen11g026600' => 'spe', 'Sopen11g030170' => 'spe', 'Sp1g10420' => 'spa', 'Sp3g06570' => 'spa', 'Sp4g10660' => 'spa', 'Sp5g16460' => 'spa', 'Sp6g22710' => 'spa', 'TAR365G0112' => 'tar', 'TAR369G0717' => 'tar', 'TAR374G0976' => 'tar', 'TAR623G1128' => 'tar', 'TAR626G1937' => 'tar', 'TAR627G0123' => 'tar', 'TAR628G0305' => 'tar', 'TAR636G1176' => 'tar', 'TAR636G2442' => 'tar', 'THA.LOC104800556' => 'tha', 'THA.LOC104809501' => 'tha', 'THA.LOC104815126' => 'tha', 'THA.LOC104815732' => 'tha', 'THA.LOC104823528' => 'tha', 'Thecc.02G365600' => 'tca', 'Thecc.06G222300' => 'tca', 'Thecc.09G261800' => 'tca', 'Thecc.09G291400' => 'tca', 'Thhalv10003028m.g' => 'esa', 'Thhalv10007886m.g' => 'esa', 'Thhalv10016085m.g' => 'esa', 'Thhalv10016681m.g' => 'esa', 'Thhalv10020951m.g' => 'esa', 'TPR.G15598' => 'tpr', 'TPR.G29305' => 'tpr', 'TPR.G32395' => 'tpr', 'TPR.G36998' => 'tpr', 'TPR.G4227' => 'tpr', 'TWI18G1433' => 'twi', 'TWI31G0755' => 'twi', 'TWI38G0912' => 'twi', 'TWI75G1097' => 'twi', 'TWI75G1619' => 'twi', 'TWI79G1336' => 'twi', 'unitig_0.g943' => 'ugi', 'unitig_0.g944' => 'ugi', 'unitig_22.g6646' => 'ugi', 'unitig_37.g12681' => 'ugi', 'unitig_8.g3290' => 'ugi', 'vmacro03278' => 'vma', 'vmacro12197' => 'vma', 'vmacro14478' => 'vma', 'vmacro15787' => 'vma', 'vmacro15789' => 'vma', 'vmacro15790' => 'vma', 'vmacro15806' => 'vma', 'vmacro22907' => 'vma', 'vmacro22908' => 'vma', 'vmacro22909' => 'vma', 'vmacro23108' => 'vma', 'VMungo0540G0540' => 'vmu', 'VMungo0540G2468' => 'vmu', 'VMungo1080G0390' => 'vmu', 'VMungo1080G1165' => 'vmu', 'VMungo1127G0170' => 'vmu', 'VMungo1127G2099' => 'vmu', 'VMungo1215G3013' => 'vmu', 'Zm00001eb013110' => 'zma', 'Zm00001eb084260' => 'zma', 'Zm00001eb096110' => 'zma', 'Zm00001eb217510' => 'zma', 'Zm00001eb322550' => 'zma', 'Zm00001eb390770' => 'zma', 'Zm00001eb397170' => 'zma', 'Zm00001eb404610' => 'zma', 'Zm00001eb421790' => 'zma' ) $gf_id = 'HOM05D000911' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000911' ) $data_identifier = 'HOM05D000911' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 16, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 5, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 6, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 8, 'nnu' => (int) 16, 'oeu' => (int) 8, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 5, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 16, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421790' $species_info = array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ) $local_species = 'cre' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000911', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27780' => 'bna', 'A03p35380' => 'bna', 'A04p21160' => 'bna', 'A05p40570' => 'bna', 'A06p26900' => 'bna', 'A08p33230' => 'bna', 'A09p65960' => 'bna', 'A10p18290' => 'bna', 'Aa31LG1G12990' => 'aar', 'Aa31LG1G2980' => 'aar', 'Aa31LG4G14320' => 'aar', 'Aa31LG7G11800' => 'aar', 'Aa31sc36G50' => 'aar', 'Aa31sc36G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3721' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5459' => 'aag', 'Actinidia03028' => 'ach', 'Actinidia03753' => 'ach', 'Actinidia04187' => 'ach', 'Actinidia05509' => 'ach', 'Actinidia24180' => 'ach', 'Actinidia26906' => 'ach', 'Actinidia37097' => 'ach', 'Actinidia38249' => 'ach', 'Ah.01g003470' => 'amhyb', 'Ah.01g004580' => 'amhyb', 'Ah.01g014850' => 'amhyb', 'Ah.01g016830' => 'amhyb', 'Ah.14g088000' => 'amhyb', 'AL1G22980' => 'aly', 'AL3G18990' => 'aly', 'AL4G22440' => 'aly', 'AL4G33180' => 'aly', 'AL5G22920' => 'aly', 'AL6G33660' => 'aly', 'AL8G20720' => 'aly', 'Aqoxy1G00935' => 'aox', 'Aqoxy1G02094' => 'aox', 'Aqoxy2G01239' => 'aox', 'Aqoxy4G01870' => 'aox', 'Aqoxy7G00450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.36ZVTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71EM27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5D6C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH3WRE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3NCM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RIM768' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YB5YRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z36GDV' => 'arhy', 'AT1G08250' => 'ath', 'AT1G11790' => 'ath', 'AT2G27820' => 'ath', 'AT3G07630' => 'ath', 'AT3G44720' => 'ath', 'AT5G22630' => 'ath', 'ATR0693G304' => 'atr', 'ATR0794G109' => 'atr', 'ATR0820G120' => 'atr', 'ATR1159G064' => 'atr', 'Atru.chr10.2239' => 'acertr', 'Atru.chr3.3371' => 'acertr', 'Atru.chr6.3202' => 'acertr', 'AUR62006499' => 'cqu', 'AUR62012718' => 'cqu', 'AUR62021938' => 'cqu', 'AUR62023932' => 'cqu', 'AUR62025034' => 'cqu', 'AUR62025035' => 'cqu', 'AUR62038307' => 'cqu', 'AUR62043466' => 'cqu', 'BcaB02g10748' => 'bca', 'BcaB03g13231' => 'bca', 'BcaB03g14689' => 'bca', 'BcaB05g22716' => 'bca', 'BcaB06g28172' => 'bca', 'BcaB08g36413' => 'bca', 'BcaC01g02186' => 'bca', 'BcaC01g04272' => 'bca', 'BcaC02g08080' => 'bca', 'BcaC02g08227' => 'bca', 'BcaC03g13901' => 'bca', 'BcaC04g19593' => 'bca', 'BcaC04g20874' => 'bca', 'BcaC05g29557' => 'bca', 'BcaC06g35505' => 'bca', 'BcaC07g41954' => 'bca', 'BcaC07g41955' => 'bca', 'BcaC07g41956' => 'bca', 'BcaC07g42519' => 'bca', 'BcaC07g42520' => 'bca', 'BcaC07g42523' => 'bca', 'BcaC07g42524' => 'bca', 'BcaC07g42525' => 'bca', 'BcaC08g47480' => 'bca', 'BcaC08g47481' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00530' => 'bna', 'BolC2t07178H' => 'bol', 'BolC3t16567H' => 'bol', 'BolC4t27234H' => 'bol', 'BolC5t29728H' => 'bol', 'BolC5t34622H' => 'bol', 'BolC6t40321H' => 'bol', 'BolC7t42028H' => 'bol', 'BolC8t49125H' => 'bol', 'BolC8t52538H' => 'bol', 'BolC8t52539H' => 'bol', 'BolC9t56681H' => 'bol', 'BolC9t58266H' => 'bol', 'BolSC21t60294H' => 'bol', 'BraA02t05670Z' => 'bra', 'BraA03t12716Z' => 'bra', 'BraA04t17685Z' => 'bra', 'BraA05t22788Z' => 'bra', 'BraA06t24032Z' => 'bra', 'BraA06t25625Z' => 'bra', 'BraA07t27930Z' => 'bra', 'BraA08t35242Z' => 'bra', 'BraA09t38609Z' => 'bra', 'BraA10t43905Z' => 'bra', 'C02p11060' => 'bna', 'C03p42990' => 'bna', 'C03p67310' => 'bna', 'C04p56990' => 'bna', 'C04p58660' => 'bna', 'C05p09890' => 'bna', 'C05p59680' => 'bna', 'C06p19830' => 'bna', 'C06p53040' => 'bna', 'C07p15230' => 'bna', 'C08p50070' => 'bna', 'C08p50090' => 'bna', 'C09p38330' => 'bna', 'C09p53940' => 'bna', 'CAN.G1014.1' => 'can', 'CAN.G644.30' => 'can', 'CAN.G84.47' => 'can', 'CAN.G919.8' => 'can', 'CANSAT54G0113' => 'cansat', 'CANSAT54G1286' => 'cansat', 'CANSAT64G1020' => 'cansat', 'CARHR008080' => 'chi', 'CARHR008090' => 'chi', 'CARHR012130' => 'chi', 'CARHR038390' => 'chi', 'CARHR082330' => 'chi', 'CARHR120520' => 'chi', 'CARHR151470' => 'chi', 'CARHR190950' => 'chi', 'Carub.0001s0760' => 'cru', 'Carub.0001s1146' => 'cru', 'Carub.0003s0721' => 'cru', 'Carub.0004s0858' => 'cru', 'Carub.0005s1040' => 'cru', 'Carub.0006s2035' => 'cru', 'Carub.0015s0005' => 'cru', 'Ca_01607_v3' => 'car', 'Ca_01677_v3' => 'car', 'Ca_06087_v3' => 'car', 'Ca_19238_v3' => 'car', 'Ca_19373_v3' => 'car', 'Ca_21079_v3' => 'car', 'CBR_g54016' => 'cbr', 'CBR_g54018' => 'cbr', 'CBR_g54020' => 'cbr', 'Cc01_g09780' => 'ccan', 'Cc01_g11680' => 'ccan', 'Cc02_g15610' => 'ccan', 'Cc05_g04350' => 'ccan', 'Cc09_g01580' => 'ccan', 'CDE01G0795' => 'cde', 'CDE02G2024' => 'cde', 'CDE02G2260' => 'cde', 'CDE02G4561' => 'cde', 'CDE05G2733' => 'cde', 'CDE05G3422' => 'cde', 'CDE06G2003' => 'cde', 'CDE08G0576' => 'cde', 'CDE09G0048' => 'cde', 'CDE11G0805' => 'cde', 'Cfa003644' => 'cfa', 'Cfa006290' => 'cfa', 'Cfa010080' => 'cfa', 'Cfa011376' => 'cfa', 'Cfa011576' => 'cfa', 'Cfa011577' => 'cfa', 'Cfa014389' => 'cfa', 'Ciclev10006044m.g' => 'ccl', 'Ciclev10006954m.g' => 'ccl', 'Ciclev10015131m.g' => 'ccl', 'Ciclev10015580m.g' => 'ccl', 'Ciclev10028359m.g' => 'ccl', 'Ciclev10028573m.g' => 'ccl', 'CiPaw.03G159300' => 'cil', 'CiPaw.04G115100' => 'cil', 'CiPaw.09G092800' => 'cil', 'CiPaw.10G071800' => 'cil', 'CiPaw.13G105800' => 'cil', 'CiPaw.13G141000' => 'cil', 'CiPaw.14G103400' => 'cil', 'ClCG01G012700' => 'cla', 'ClCG01G012720' => 'cla', 'ClCG01G021920' => 'cla', 'ClCG02G008870' => 'cla', 'ClCG02G020840' => 'cla', 'ClCG02G021930' => 'cla', 'COL.COLO4_19302' => 'col', 'COL.COLO4_25262' => 'col', 'COL.COLO4_31788' => 'col', 'Cpa.g.c34684' => 'cpa', 'Cpa.g.c36520.1' => 'cpa', 'Cpa.g.c45626' => 'cpa', 'Cpa.g.sc121.17' => 'cpa', 'Cpa.g.sc13.22' => 'cpa', 'Cpa.g.sc87.88' => 'cpa', 'Cre06.g261800' => 'cre', 'CsaV3_1G014500' => 'csa', 'CsaV3_1G014510' => 'csa', 'CsaV3_2G034880' => 'csa', 'CsaV3_6G014760' => 'csa', 'CsaV3_6G021500' => 'csa', 'CsaV3_6G048980' => 'csa', 'CSS0002511' => 'camsi', 'CSS0007556' => 'camsi', 'CSS0008532' => 'camsi', 'CSS0009709' => 'camsi', 'CSS0010486' => 'camsi', 'CSS0016768' => 'camsi', 'CSS0023512' => 'camsi', 'CSS0025341' => 'camsi', 'CSS0027999' => 'camsi', 'CSS0028944' => 'camsi', 'CSS0032292' => 'camsi', 'CSS0032464' => 'camsi', 'CSS0037153' => 'camsi', 'CSS0039256' => 'camsi', 'CSS0048392' => 'camsi', 'CSS0050458' => 'camsi', 'DCAR_004224' => 'dca', 'DCAR_006147' => 'dca', 'DCAR_006465' => 'dca', 'DCAR_008159' => 'dca', 'DCAR_012164' => 'dca', 'DCAR_019764' => 'dca', 'Dinv05418' => 'din', 'Dinv10839' => 'din', 'Dinv12521' => 'din', 'Dinv13900' => 'din', 'Dinv29426' => 'din', 'Duzib150G0263' => 'dzi', 'Duzib168G1178' => 'dzi', 'Duzib168G1924' => 'dzi', 'Duzib170G0299' => 'dzi', 'Duzib170G0813' => 'dzi', 'Duzib235G1128' => 'dzi', 'Duzib248G1060' => 'dzi', 'ECA232G1910' => 'eca', 'ECA233G4621' => 'eca', 'ECA238G1216' => 'eca', 'ECA238G1784' => 'eca', 'ECA248G1242' => 'eca', 'EL10Ac8g20071' => 'bvu', 'EL10Ac9g21086' => 'bvu', 'EL10Ac9g22407' => 'bvu', 'EL10Ac9g22412' => 'bvu', 'Eucgr.A01119' => 'egr', 'Eucgr.E04043' => 'egr', 'Eucgr.J00428' => 'egr', 'Eucgr.J00958' => 'egr', 'FAN11G3091' => 'fan', 'FAN11G3651' => 'fan', 'FAN16G2566' => 'fan', 'FAN21G3155' => 'fan', 'FAN21G3400' => 'fan', 'FAN21G3543' => 'fan', 'FAN25G0234' => 'fan', 'FAN25G1422' => 'fan', 'FAN25G3392' => 'fan', 'FvH4_3g01940' => 'fve', 'FvH4_3g29870' => 'fve', 'FvH4_3g33680' => 'fve', 'Glyma.09G004200' => 'gma', 'Glyma.11G151288' => 'gma', 'Glyma.11G189100' => 'gma', 'Glyma.12G072500' => 'gma', 'Glyma.12G085500' => 'gma', 'Glyma.12G181800' => 'gma', 'Glyma.12G193000' => 'gma', 'Glyma.13G309300' => 'gma', 'Glyma.13G319000' => 'gma', 'Glyma.17G012600' => 'gma', 'Gohir.A06G148600' => 'ghi', 'Gohir.A07G115800' => 'ghi', 'Gohir.A08G003600' => 'ghi', 'Gohir.A09G093300' => 'ghi', 'Gohir.A09G105400' => 'ghi', 'Gohir.A09G105500' => 'ghi', 'Gohir.D06G154600' => 'ghi', 'Gohir.D07G120200' => 'ghi', 'Gohir.D08G013900' => 'ghi', 'Gohir.D09G093100' => 'ghi', 'Gohir.D09G102200' => 'ghi', 'Gohir.D09G102300' => 'ghi', 'Gorai.001G129400' => 'gra', 'Gorai.004G008200' => 'gra', 'Gorai.006G109800' => 'gra', 'Gorai.006G119500' => 'gra', 'Gorai.006G121300' => 'gra', 'Gorai.010G180700' => 'gra', 'GSVIVG01012716001' => 'vvi', 'GSVIVG01025118001' => 'vvi', 'GSVIVG01030439001' => 'vvi', 'GSVIVG01031397001' => 'vvi', 'HanXRQChr01g0004201' => 'han', 'HanXRQChr02g0054941' => 'han', 'HanXRQChr05g0141811' => 'han', 'HanXRQChr07g0197751' => 'han', 'HanXRQChr11g0346691' => 'han', 'HanXRQChr13g0396971' => 'han', 'HanXRQChr14g0432951' => 'han', 'HanXRQChr14g0452001' => 'han', 'HanXRQChr15g0496681' => 'han', 'HanXRQChr17g0557491' => 'han', 'HanXRQChr17g0557501' => 'han', 'Haze_06809' => 'cav', 'Haze_12852' => 'cav', 'Haze_15850' => 'cav', 'Haze_23446' => 'cav', 'Haze_23942' => 'cav', 'Haze_23943' => 'cav', 'Hma1.2p1_0091F.1_g046450' => 'hma', 'Hma1.2p1_0128F.1_g059910' => 'hma', 'Hma1.2p1_0249F.1_g102260' => 'hma', 'Hma1.2p1_0453F.1_g156190' => 'hma', 'Hma1.2p1_0695F.1_g204380' => 'hma', 'Hma1.2p1_0749F.1_g212650' => 'hma', 'Hma1.2p1_2156F.1_g315420' => 'hma', 'Hma1.2p1_2686F.1_g326940' => 'hma', 'HPP92_006428' => 'vpl', 'HPP92_012069' => 'vpl', 'HPP92_014129' => 'vpl', 'HPP92_014133' => 'vpl', 'HPP92_017315' => 'vpl', 'HPP92_026445' => 'vpl', 'HPP92_026446' => 'vpl', 'Hund00774' => 'sun', 'Hund07682' => 'sun', 'Hund21413' => 'sun', 'Hund23462' => 'sun', 'Hund23463' => 'sun', 'Lalb_Chr03g0027911' => 'lal', 'Lalb_Chr13g0304271' => 'lal', 'Lalb_Chr19g0137471' => 'lal', 'Lalb_Chr22g0350651' => 'lal', 'Lalb_Chr24g0395151' => 'lal', 'Lj1A1231T40' => 'lonja', 'Lj1A221T48' => 'lonja', 'Lj1C924T12' => 'lonja', 'Lj2C993G6' => 'lonja', 'Lj3g0005790' => 'lja', 'Lj3g0015432' => 'lja', 'Lj3g0017722' => 'lja', 'Lj3g0018497' => 'lja', 'Lj4g0025071' => 'lja', 'Lsat_1_v5_gn_1_129680' => 'lsa', 'Lsat_1_v5_gn_2_25321' => 'lsa', 'Lsat_1_v5_gn_2_95461' => 'lsa', 'Lsat_1_v5_gn_4_159620' => 'lsa', 'Lsat_1_v5_gn_6_41301' => 'lsa', 'Lsat_1_v5_gn_6_74660' => 'lsa', 'Lsat_1_v5_gn_7_11520' => 'lsa', 'Lsat_1_v5_gn_9_67680' => 'lsa', 'Manes.04G008300' => 'mes', 'Manes.04G008400' => 'mes', 'Manes.04G026500' => 'mes', 'Manes.10G135300' => 'mes', 'Manes.11G157300' => 'mes', 'Manes.12G074000' => 'mes', 'Manes.16G006200' => 'mes', 'Manes.17G026400' => 'mes', 'Mapoly0024s0086' => 'mpo', 'Mapoly0024s0087' => 'mpo', 'Mapoly0071s0057' => 'mpo', 'Mapoly0204s0012' => 'mpo', 'MBI04_g37681_MAGBIO' => 'mbi', 'MBI05_g17779_MAGBIO' => 'mbi', 'MBI12_g31184_MAGBIO' => 'mbi', 'MBI17_g11083_MAGBIO' => 'mbi', 'MBI18_g03883_MAGBIO' => 'mbi', 'MBI18_g28940_MAGBIO' => 'mbi', 'MCO01G690' => 'mco', 'MD03G1109900' => 'mdo', 'MD03G1134800' => 'mdo', 'MD05G1348000' => 'mdo', 'MD10G1322400' => 'mdo', 'MD11G1123300' => 'mdo', 'MD11G1157600' => 'mdo', 'Medtr2g084875' => 'mtr', 'Medtr2g088130' => 'mtr', 'Medtr4g055310' => 'mtr', 'Medtr4g061070' => 'mtr', 'Medtr4g132250' => 'mtr', 'MELO3C004795.2' => 'cme', 'MELO3C004797.2' => 'cme', 'MELO3C007396.2' => 'cme', 'MELO3C019277.2' => 'cme', 'MELO3C021449.2' => 'cme', 'MELO3C025736.2' => 'cme', 'Migut.D02175' => 'egut', 'Migut.H01573' => 'egut', 'Migut.M01327' => 'egut', 'Migut.N02513' => 'egut', 'MSTRG.14638' => 'ama', 'MSTRG.18632' => 'ama', 'MSTRG.7203' => 'ama', 'Nitab4.5_0000533g0140' => 'nta', 'Nitab4.5_0000888g0150' => 'nta', 'Nitab4.5_0001453g0040' => 'nta', 'Nitab4.5_0002827g0090' => 'nta', 'Nitab4.5_0003082g0040' => 'nta', 'Nitab4.5_0007799g0040' => 'nta', 'Nitab4.5_0008983g0010' => 'nta', 'Nitab4.5_0009017g0020' => 'nta', 'Nn1g02132' => 'nnu', 'Nn1g03492' => 'nnu', 'Nn1g03493' => 'nnu', 'Nn1g03494' => 'nnu', 'Nn1g07164' => 'nnu', 'Nn1g07291' => 'nnu', 'Nn2g10655' => 'nnu', 'Nn2g11652' => 'nnu', 'Nn2g14008' => 'nnu', 'Nn3g17476' => 'nnu', 'Nn3g17477' => 'nnu', 'Nn4g22370' => 'nnu', 'Nn4g25255' => 'nnu', 'Nn5g27755' => 'nnu', 'Nn6g34260' => 'nnu', 'Nn6g35041' => 'nnu', 'Oeu005924.1' => 'oeu', 'Oeu008383.1' => 'oeu', 'Oeu014928.1' => 'oeu', 'Oeu019889.1' => 'oeu', 'Oeu022271.1' => 'oeu', 'Oeu025271.1' => 'oeu', 'Oeu036302.1' => 'oeu', 'Oeu044100.1' => 'oeu', 'Os01g0528300' => 'osa', 'Os03g0286200' => 'osa', 'Os04g0406600' => 'osa', 'Os07g0512000' => 'osa', 'Os07g0694600' => 'osa', 'Os08g0411000' => 'osa', 'Os09g0565700' => 'osa', 'Os09g0566050' => 'osa', 'Os10g0523700' => 'osa', 'Peaxi162Scf00002g00514' => 'pax', 'Peaxi162Scf00047g01817' => 'pax', 'Peaxi162Scf00114g00001' => 'pax', 'Peaxi162Scf00147g00613' => 'pax', 'Peaxi162Scf00389g00425' => 'pax', 'PGR042G1139' => 'pgr', 'PGR042G3273' => 'pgr', 'PGR102G2180' => 'pgr', 'PGR119G0234' => 'pgr', 'PGR119G0668' => 'pgr', 'PGSC0003DMG400007122' => 'stu', 'PGSC0003DMG400016478' => 'stu', 'PGSC0003DMG400025374' => 'stu', 'PGSC0003DMG400026536' => 'stu', 'Phvul.003G079600' => 'pvu', 'Phvul.005G115600' => 'pvu', 'Phvul.005G127100' => 'pvu', 'Phvul.006G149500' => 'pvu', 'Phvul.006G149600' => 'pvu', 'Phvul.011G071800' => 'pvu', 'Phvul.011G090400' => 'pvu', 'Potri.004G013400' => 'ptr', 'Potri.004G188100' => 'ptr', 'Potri.008G195500' => 'ptr', 'Potri.009G148800' => 'ptr', 'Potri.011G004700' => 'ptr', 'Pp3c17_22810' => 'ppa', 'Pp3c18_4480' => 'ppa', 'Pp3c19_13030' => 'ppa', 'Pp3c1_33620' => 'ppa', 'Pp3c2_9380' => 'ppa', 'PRCOL_00001023' => 'pco', 'Prupe.3G216300' => 'ppe', 'Prupe.4G019500' => 'ppe', 'Prupe.6G092500' => 'ppe', 'Prupe.6G119200' => 'ppe', 'Psat0s1945g0080' => 'psa', 'Psat0s4167g0040' => 'psa', 'Psat1g185800' => 'psa', 'Psat4g006440' => 'psa', 'Psat4g006480' => 'psa', 'Psat4g168120' => 'psa', 'Psat5g255680' => 'psa', 'Psat5g261760' => 'psa', 'Psat7g222120' => 'psa', 'PSO063G7252' => 'pso', 'PSO170G4778' => 'pso', 'PSO210G2249' => 'pso', 'PSO339G2411' => 'pso', 'PSO339G2457' => 'pso', 'PSO339G2854' => 'pso', 'PSO339G4288' => 'pso', 'PSO339G4615' => 'pso', 'PSO384G2796' => 'pso', 'PSO384G2940' => 'pso', 'PSO384G4227' => 'pso', 'PSO478G1425' => 'pso', 'PSO541G3863' => 'pso', 'PSO675G0507' => 'pso', 'PSO782G0338' => 'pso', 'PSO832G0644' => 'pso', 'QL01p013664' => 'qlo', 'QL01p036598' => 'qlo', 'QL05p072984' => 'qlo', 'QL08p005768' => 'qlo', 'QL08p032743' => 'qlo', 'QL93p0073_0439' => 'qlo', 'QL93p0073_0444' => 'qlo', 'RcHm_v2.0_Chr5g0002851' => 'rch', 'RcHm_v2.0_Chr5g0055201' => 'rch', 'RcHm_v2.0_Chr5g0061191' => 'rch', 'RcHm_v2.0_Chr7g0203231' => 'rch', 'Rhsim01G0208100' => 'rsi', 'Rhsim01G0208200' => 'rsi', 'Rhsim02G0106500' => 'rsi', 'Rhsim03G0107900' => 'rsi', 'Rhsim06G0163400' => 'rsi', 'Rhsim13G0105200' => 'rsi', 'Sabra04G0006300' => 'sbr', 'Sabra04G0127000' => 'sbr', 'Sabra08G0148700' => 'sbr', 'Sabra09G0117400' => 'sbr', 'SalBow1G3326' => 'sbo', 'SalBow3G3228' => 'sbo', 'SalBow6G1634' => 'sbo', 'SalBow6G3603' => 'sbo', 'SalBow6G5266' => 'sbo', 'SalBow7G2265' => 'sbo', 'SalBow8G0850' => 'sbo', 'SalBow8G2592' => 'sbo', 'Sc05g0009240' => 'sci', 'Sc12g0002300' => 'sci', 'Sc21g0000100' => 'sci', 'Sc21g0004720' => 'sci', 'Sed0002949' => 'sed', 'Sed0004114' => 'sed', 'Sed0004306' => 'sed', 'Sed0006172' => 'sed', 'Sed0008413' => 'sed', 'Sed0013809' => 'sed', 'Sed0019556' => 'sed', 'SEGI_03570' => 'sgi', 'SEGI_07859' => 'sgi', 'SEGI_15042' => 'sgi', 'SEGI_16263' => 'sgi', 'SEGI_16552' => 'sgi', 'SEGI_24331' => 'sgi', 'SEGI_27316' => 'sgi', 'SEGI_29521' => 'sgi', 'SEGI_41342' => 'sgi', 'SGA_v2.0_scaffold27G11617' => 'sas', 'SGA_v2.0_scaffold316G48428' => 'sas', 'SGA_v2.0_scaffold49G18261' => 'sas', 'SGA_v2.0_scaffold7G03831' => 'sas', 'SGA_v2.0_scaffold93G28359' => 'sas', 'SHI02210' => 'shi', 'SHI06028' => 'shi', 'SHI06321' => 'shi', 'SMO111G0012' => 'smo', 'SMO228G0080' => 'smo', 'SMO356G0756' => 'smo', 'Solyc02g080620.3' => 'sly', 'Solyc06g074530.1' => 'sly', 'Solyc11g066890.1' => 'sly', 'Solyc11g072520.3' => 'sly', 'Sopen02g025330' => 'spe', 'Sopen06g031000' => 'spe', 'Sopen09g008240' => 'spe', 'Sopen09g025210' => 'spe', 'Sopen11g026600' => 'spe', 'Sopen11g030170' => 'spe', 'Sp1g10420' => 'spa', 'Sp3g06570' => 'spa', 'Sp4g10660' => 'spa', 'Sp5g16460' => 'spa', 'Sp6g22710' => 'spa', 'TAR365G0112' => 'tar', 'TAR369G0717' => 'tar', 'TAR374G0976' => 'tar', 'TAR623G1128' => 'tar', 'TAR626G1937' => 'tar', 'TAR627G0123' => 'tar', 'TAR628G0305' => 'tar', 'TAR636G1176' => 'tar', 'TAR636G2442' => 'tar', 'THA.LOC104800556' => 'tha', 'THA.LOC104809501' => 'tha', 'THA.LOC104815126' => 'tha', 'THA.LOC104815732' => 'tha', 'THA.LOC104823528' => 'tha', 'Thecc.02G365600' => 'tca', 'Thecc.06G222300' => 'tca', 'Thecc.09G261800' => 'tca', 'Thecc.09G291400' => 'tca', 'Thhalv10003028m.g' => 'esa', 'Thhalv10007886m.g' => 'esa', 'Thhalv10016085m.g' => 'esa', 'Thhalv10016681m.g' => 'esa', 'Thhalv10020951m.g' => 'esa', 'TPR.G15598' => 'tpr', 'TPR.G29305' => 'tpr', 'TPR.G32395' => 'tpr', 'TPR.G36998' => 'tpr', 'TPR.G4227' => 'tpr', 'TWI18G1433' => 'twi', 'TWI31G0755' => 'twi', 'TWI38G0912' => 'twi', 'TWI75G1097' => 'twi', 'TWI75G1619' => 'twi', 'TWI79G1336' => 'twi', 'unitig_0.g943' => 'ugi', 'unitig_0.g944' => 'ugi', 'unitig_22.g6646' => 'ugi', 'unitig_37.g12681' => 'ugi', 'unitig_8.g3290' => 'ugi', 'vmacro03278' => 'vma', 'vmacro12197' => 'vma', 'vmacro14478' => 'vma', 'vmacro15787' => 'vma', 'vmacro15789' => 'vma', 'vmacro15790' => 'vma', 'vmacro15806' => 'vma', 'vmacro22907' => 'vma', 'vmacro22908' => 'vma', 'vmacro22909' => 'vma', 'vmacro23108' => 'vma', 'VMungo0540G0540' => 'vmu', 'VMungo0540G2468' => 'vmu', 'VMungo1080G0390' => 'vmu', 'VMungo1080G1165' => 'vmu', 'VMungo1127G0170' => 'vmu', 'VMungo1127G2099' => 'vmu', 'VMungo1215G3013' => 'vmu', 'Zm00001eb013110' => 'zma', 'Zm00001eb084260' => 'zma', 'Zm00001eb096110' => 'zma', 'Zm00001eb217510' => 'zma', 'Zm00001eb322550' => 'zma', 'Zm00001eb390770' => 'zma', 'Zm00001eb397170' => 'zma', 'Zm00001eb404610' => 'zma', 'Zm00001eb421790' => 'zma' ), 'gf_id' => 'HOM05D000911', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000911' ), 'data_identifier' => 'HOM05D000911', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000911', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27780' => 'bna', 'A03p35380' => 'bna', 'A04p21160' => 'bna', 'A05p40570' => 'bna', 'A06p26900' => 'bna', 'A08p33230' => 'bna', 'A09p65960' => 'bna', 'A10p18290' => 'bna', 'Aa31LG1G12990' => 'aar', 'Aa31LG1G2980' => 'aar', 'Aa31LG4G14320' => 'aar', 'Aa31LG7G11800' => 'aar', 'Aa31sc36G50' => 'aar', 'Aa31sc36G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3721' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5459' => 'aag', 'Actinidia03028' => 'ach', 'Actinidia03753' => 'ach', 'Actinidia04187' => 'ach', 'Actinidia05509' => 'ach', 'Actinidia24180' => 'ach', 'Actinidia26906' => 'ach', 'Actinidia37097' => 'ach', 'Actinidia38249' => 'ach', 'Ah.01g003470' => 'amhyb', 'Ah.01g004580' => 'amhyb', 'Ah.01g014850' => 'amhyb', 'Ah.01g016830' => 'amhyb', 'Ah.14g088000' => 'amhyb', 'AL1G22980' => 'aly', 'AL3G18990' => 'aly', 'AL4G22440' => 'aly', 'AL4G33180' => 'aly', 'AL5G22920' => 'aly', 'AL6G33660' => 'aly', 'AL8G20720' => 'aly', 'Aqoxy1G00935' => 'aox', 'Aqoxy1G02094' => 'aox', 'Aqoxy2G01239' => 'aox', 'Aqoxy4G01870' => 'aox', 'Aqoxy7G00450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.36ZVTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71EM27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5D6C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH3WRE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3NCM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RIM768' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YB5YRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z36GDV' => 'arhy', 'AT1G08250' => 'ath', 'AT1G11790' => 'ath', 'AT2G27820' => 'ath', 'AT3G07630' => 'ath', 'AT3G44720' => 'ath', 'AT5G22630' => 'ath', 'ATR0693G304' => 'atr', 'ATR0794G109' => 'atr', 'ATR0820G120' => 'atr', 'ATR1159G064' => 'atr', 'Atru.chr10.2239' => 'acertr', 'Atru.chr3.3371' => 'acertr', 'Atru.chr6.3202' => 'acertr', 'AUR62006499' => 'cqu', 'AUR62012718' => 'cqu', 'AUR62021938' => 'cqu', 'AUR62023932' => 'cqu', 'AUR62025034' => 'cqu', 'AUR62025035' => 'cqu', 'AUR62038307' => 'cqu', 'AUR62043466' => 'cqu', 'BcaB02g10748' => 'bca', 'BcaB03g13231' => 'bca', 'BcaB03g14689' => 'bca', 'BcaB05g22716' => 'bca', 'BcaB06g28172' => 'bca', 'BcaB08g36413' => 'bca', 'BcaC01g02186' => 'bca', 'BcaC01g04272' => 'bca', 'BcaC02g08080' => 'bca', 'BcaC02g08227' => 'bca', 'BcaC03g13901' => 'bca', 'BcaC04g19593' => 'bca', 'BcaC04g20874' => 'bca', 'BcaC05g29557' => 'bca', 'BcaC06g35505' => 'bca', 'BcaC07g41954' => 'bca', 'BcaC07g41955' => 'bca', 'BcaC07g41956' => 'bca', 'BcaC07g42519' => 'bca', 'BcaC07g42520' => 'bca', 'BcaC07g42523' => 'bca', 'BcaC07g42524' => 'bca', 'BcaC07g42525' => 'bca', 'BcaC08g47480' => 'bca', 'BcaC08g47481' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00530' => 'bna', 'BolC2t07178H' => 'bol', 'BolC3t16567H' => 'bol', 'BolC4t27234H' => 'bol', 'BolC5t29728H' => 'bol', 'BolC5t34622H' => 'bol', 'BolC6t40321H' => 'bol', 'BolC7t42028H' => 'bol', 'BolC8t49125H' => 'bol', 'BolC8t52538H' => 'bol', 'BolC8t52539H' => 'bol', 'BolC9t56681H' => 'bol', 'BolC9t58266H' => 'bol', 'BolSC21t60294H' => 'bol', 'BraA02t05670Z' => 'bra', 'BraA03t12716Z' => 'bra', 'BraA04t17685Z' => 'bra', 'BraA05t22788Z' => 'bra', 'BraA06t24032Z' => 'bra', 'BraA06t25625Z' => 'bra', 'BraA07t27930Z' => 'bra', 'BraA08t35242Z' => 'bra', 'BraA09t38609Z' => 'bra', 'BraA10t43905Z' => 'bra', 'C02p11060' => 'bna', 'C03p42990' => 'bna', 'C03p67310' => 'bna', 'C04p56990' => 'bna', 'C04p58660' => 'bna', 'C05p09890' => 'bna', 'C05p59680' => 'bna', 'C06p19830' => 'bna', 'C06p53040' => 'bna', 'C07p15230' => 'bna', 'C08p50070' => 'bna', 'C08p50090' => 'bna', 'C09p38330' => 'bna', 'C09p53940' => 'bna', 'CAN.G1014.1' => 'can', 'CAN.G644.30' => 'can', 'CAN.G84.47' => 'can', 'CAN.G919.8' => 'can', 'CANSAT54G0113' => 'cansat', 'CANSAT54G1286' => 'cansat', 'CANSAT64G1020' => 'cansat', 'CARHR008080' => 'chi', 'CARHR008090' => 'chi', 'CARHR012130' => 'chi', 'CARHR038390' => 'chi', 'CARHR082330' => 'chi', 'CARHR120520' => 'chi', 'CARHR151470' => 'chi', 'CARHR190950' => 'chi', 'Carub.0001s0760' => 'cru', 'Carub.0001s1146' => 'cru', 'Carub.0003s0721' => 'cru', 'Carub.0004s0858' => 'cru', 'Carub.0005s1040' => 'cru', 'Carub.0006s2035' => 'cru', 'Carub.0015s0005' => 'cru', 'Ca_01607_v3' => 'car', 'Ca_01677_v3' => 'car', 'Ca_06087_v3' => 'car', 'Ca_19238_v3' => 'car', 'Ca_19373_v3' => 'car', 'Ca_21079_v3' => 'car', 'CBR_g54016' => 'cbr', 'CBR_g54018' => 'cbr', 'CBR_g54020' => 'cbr', 'Cc01_g09780' => 'ccan', 'Cc01_g11680' => 'ccan', 'Cc02_g15610' => 'ccan', 'Cc05_g04350' => 'ccan', 'Cc09_g01580' => 'ccan', 'CDE01G0795' => 'cde', 'CDE02G2024' => 'cde', 'CDE02G2260' => 'cde', 'CDE02G4561' => 'cde', 'CDE05G2733' => 'cde', 'CDE05G3422' => 'cde', 'CDE06G2003' => 'cde', 'CDE08G0576' => 'cde', 'CDE09G0048' => 'cde', 'CDE11G0805' => 'cde', 'Cfa003644' => 'cfa', 'Cfa006290' => 'cfa', 'Cfa010080' => 'cfa', 'Cfa011376' => 'cfa', 'Cfa011576' => 'cfa', 'Cfa011577' => 'cfa', 'Cfa014389' => 'cfa', 'Ciclev10006044m.g' => 'ccl', 'Ciclev10006954m.g' => 'ccl', 'Ciclev10015131m.g' => 'ccl', 'Ciclev10015580m.g' => 'ccl', 'Ciclev10028359m.g' => 'ccl', 'Ciclev10028573m.g' => 'ccl', 'CiPaw.03G159300' => 'cil', 'CiPaw.04G115100' => 'cil', 'CiPaw.09G092800' => 'cil', 'CiPaw.10G071800' => 'cil', 'CiPaw.13G105800' => 'cil', 'CiPaw.13G141000' => 'cil', 'CiPaw.14G103400' => 'cil', 'ClCG01G012700' => 'cla', 'ClCG01G012720' => 'cla', 'ClCG01G021920' => 'cla', 'ClCG02G008870' => 'cla', 'ClCG02G020840' => 'cla', 'ClCG02G021930' => 'cla', 'COL.COLO4_19302' => 'col', 'COL.COLO4_25262' => 'col', 'COL.COLO4_31788' => 'col', 'Cpa.g.c34684' => 'cpa', 'Cpa.g.c36520.1' => 'cpa', 'Cpa.g.c45626' => 'cpa', 'Cpa.g.sc121.17' => 'cpa', 'Cpa.g.sc13.22' => 'cpa', 'Cpa.g.sc87.88' => 'cpa', 'Cre06.g261800' => 'cre', 'CsaV3_1G014500' => 'csa', 'CsaV3_1G014510' => 'csa', 'CsaV3_2G034880' => 'csa', 'CsaV3_6G014760' => 'csa', 'CsaV3_6G021500' => 'csa', 'CsaV3_6G048980' => 'csa', 'CSS0002511' => 'camsi', 'CSS0007556' => 'camsi', 'CSS0008532' => 'camsi', 'CSS0009709' => 'camsi', 'CSS0010486' => 'camsi', 'CSS0016768' => 'camsi', 'CSS0023512' => 'camsi', 'CSS0025341' => 'camsi', 'CSS0027999' => 'camsi', 'CSS0028944' => 'camsi', 'CSS0032292' => 'camsi', 'CSS0032464' => 'camsi', 'CSS0037153' => 'camsi', 'CSS0039256' => 'camsi', 'CSS0048392' => 'camsi', 'CSS0050458' => 'camsi', 'DCAR_004224' => 'dca', 'DCAR_006147' => 'dca', 'DCAR_006465' => 'dca', 'DCAR_008159' => 'dca', 'DCAR_012164' => 'dca', 'DCAR_019764' => 'dca', 'Dinv05418' => 'din', 'Dinv10839' => 'din', 'Dinv12521' => 'din', 'Dinv13900' => 'din', 'Dinv29426' => 'din', 'Duzib150G0263' => 'dzi', 'Duzib168G1178' => 'dzi', 'Duzib168G1924' => 'dzi', 'Duzib170G0299' => 'dzi', 'Duzib170G0813' => 'dzi', 'Duzib235G1128' => 'dzi', 'Duzib248G1060' => 'dzi', 'ECA232G1910' => 'eca', 'ECA233G4621' => 'eca', 'ECA238G1216' => 'eca', 'ECA238G1784' => 'eca', 'ECA248G1242' => 'eca', 'EL10Ac8g20071' => 'bvu', 'EL10Ac9g21086' => 'bvu', 'EL10Ac9g22407' => 'bvu', 'EL10Ac9g22412' => 'bvu', 'Eucgr.A01119' => 'egr', 'Eucgr.E04043' => 'egr', 'Eucgr.J00428' => 'egr', 'Eucgr.J00958' => 'egr', 'FAN11G3091' => 'fan', 'FAN11G3651' => 'fan', 'FAN16G2566' => 'fan', 'FAN21G3155' => 'fan', 'FAN21G3400' => 'fan', 'FAN21G3543' => 'fan', 'FAN25G0234' => 'fan', 'FAN25G1422' => 'fan', 'FAN25G3392' => 'fan', 'FvH4_3g01940' => 'fve', 'FvH4_3g29870' => 'fve', 'FvH4_3g33680' => 'fve', 'Glyma.09G004200' => 'gma', 'Glyma.11G151288' => 'gma', 'Glyma.11G189100' => 'gma', 'Glyma.12G072500' => 'gma', 'Glyma.12G085500' => 'gma', 'Glyma.12G181800' => 'gma', 'Glyma.12G193000' => 'gma', 'Glyma.13G309300' => 'gma', 'Glyma.13G319000' => 'gma', 'Glyma.17G012600' => 'gma', 'Gohir.A06G148600' => 'ghi', 'Gohir.A07G115800' => 'ghi', 'Gohir.A08G003600' => 'ghi', 'Gohir.A09G093300' => 'ghi', 'Gohir.A09G105400' => 'ghi', 'Gohir.A09G105500' => 'ghi', 'Gohir.D06G154600' => 'ghi', 'Gohir.D07G120200' => 'ghi', 'Gohir.D08G013900' => 'ghi', 'Gohir.D09G093100' => 'ghi', 'Gohir.D09G102200' => 'ghi', 'Gohir.D09G102300' => 'ghi', 'Gorai.001G129400' => 'gra', 'Gorai.004G008200' => 'gra', 'Gorai.006G109800' => 'gra', 'Gorai.006G119500' => 'gra', 'Gorai.006G121300' => 'gra', 'Gorai.010G180700' => 'gra', 'GSVIVG01012716001' => 'vvi', 'GSVIVG01025118001' => 'vvi', 'GSVIVG01030439001' => 'vvi', 'GSVIVG01031397001' => 'vvi', 'HanXRQChr01g0004201' => 'han', 'HanXRQChr02g0054941' => 'han', 'HanXRQChr05g0141811' => 'han', 'HanXRQChr07g0197751' => 'han', 'HanXRQChr11g0346691' => 'han', 'HanXRQChr13g0396971' => 'han', 'HanXRQChr14g0432951' => 'han', 'HanXRQChr14g0452001' => 'han', 'HanXRQChr15g0496681' => 'han', 'HanXRQChr17g0557491' => 'han', 'HanXRQChr17g0557501' => 'han', 'Haze_06809' => 'cav', 'Haze_12852' => 'cav', 'Haze_15850' => 'cav', 'Haze_23446' => 'cav', 'Haze_23942' => 'cav', 'Haze_23943' => 'cav', 'Hma1.2p1_0091F.1_g046450' => 'hma', 'Hma1.2p1_0128F.1_g059910' => 'hma', 'Hma1.2p1_0249F.1_g102260' => 'hma', 'Hma1.2p1_0453F.1_g156190' => 'hma', 'Hma1.2p1_0695F.1_g204380' => 'hma', 'Hma1.2p1_0749F.1_g212650' => 'hma', 'Hma1.2p1_2156F.1_g315420' => 'hma', 'Hma1.2p1_2686F.1_g326940' => 'hma', 'HPP92_006428' => 'vpl', 'HPP92_012069' => 'vpl', 'HPP92_014129' => 'vpl', 'HPP92_014133' => 'vpl', 'HPP92_017315' => 'vpl', 'HPP92_026445' => 'vpl', 'HPP92_026446' => 'vpl', 'Hund00774' => 'sun', 'Hund07682' => 'sun', 'Hund21413' => 'sun', 'Hund23462' => 'sun', 'Hund23463' => 'sun', 'Lalb_Chr03g0027911' => 'lal', 'Lalb_Chr13g0304271' => 'lal', 'Lalb_Chr19g0137471' => 'lal', 'Lalb_Chr22g0350651' => 'lal', 'Lalb_Chr24g0395151' => 'lal', 'Lj1A1231T40' => 'lonja', 'Lj1A221T48' => 'lonja', 'Lj1C924T12' => 'lonja', 'Lj2C993G6' => 'lonja', 'Lj3g0005790' => 'lja', 'Lj3g0015432' => 'lja', 'Lj3g0017722' => 'lja', 'Lj3g0018497' => 'lja', 'Lj4g0025071' => 'lja', 'Lsat_1_v5_gn_1_129680' => 'lsa', 'Lsat_1_v5_gn_2_25321' => 'lsa', 'Lsat_1_v5_gn_2_95461' => 'lsa', 'Lsat_1_v5_gn_4_159620' => 'lsa', 'Lsat_1_v5_gn_6_41301' => 'lsa', 'Lsat_1_v5_gn_6_74660' => 'lsa', 'Lsat_1_v5_gn_7_11520' => 'lsa', 'Lsat_1_v5_gn_9_67680' => 'lsa', 'Manes.04G008300' => 'mes', 'Manes.04G008400' => 'mes', 'Manes.04G026500' => 'mes', 'Manes.10G135300' => 'mes', 'Manes.11G157300' => 'mes', 'Manes.12G074000' => 'mes', 'Manes.16G006200' => 'mes', 'Manes.17G026400' => 'mes', 'Mapoly0024s0086' => 'mpo', 'Mapoly0024s0087' => 'mpo', 'Mapoly0071s0057' => 'mpo', 'Mapoly0204s0012' => 'mpo', 'MBI04_g37681_MAGBIO' => 'mbi', 'MBI05_g17779_MAGBIO' => 'mbi', 'MBI12_g31184_MAGBIO' => 'mbi', 'MBI17_g11083_MAGBIO' => 'mbi', 'MBI18_g03883_MAGBIO' => 'mbi', 'MBI18_g28940_MAGBIO' => 'mbi', 'MCO01G690' => 'mco', 'MD03G1109900' => 'mdo', 'MD03G1134800' => 'mdo', 'MD05G1348000' => 'mdo', 'MD10G1322400' => 'mdo', 'MD11G1123300' => 'mdo', 'MD11G1157600' => 'mdo', 'Medtr2g084875' => 'mtr', 'Medtr2g088130' => 'mtr', 'Medtr4g055310' => 'mtr', 'Medtr4g061070' => 'mtr', 'Medtr4g132250' => 'mtr', 'MELO3C004795.2' => 'cme', 'MELO3C004797.2' => 'cme', 'MELO3C007396.2' => 'cme', 'MELO3C019277.2' => 'cme', 'MELO3C021449.2' => 'cme', 'MELO3C025736.2' => 'cme', 'Migut.D02175' => 'egut', 'Migut.H01573' => 'egut', 'Migut.M01327' => 'egut', 'Migut.N02513' => 'egut', 'MSTRG.14638' => 'ama', 'MSTRG.18632' => 'ama', 'MSTRG.7203' => 'ama', 'Nitab4.5_0000533g0140' => 'nta', 'Nitab4.5_0000888g0150' => 'nta', 'Nitab4.5_0001453g0040' => 'nta', 'Nitab4.5_0002827g0090' => 'nta', 'Nitab4.5_0003082g0040' => 'nta', 'Nitab4.5_0007799g0040' => 'nta', 'Nitab4.5_0008983g0010' => 'nta', 'Nitab4.5_0009017g0020' => 'nta', 'Nn1g02132' => 'nnu', 'Nn1g03492' => 'nnu', 'Nn1g03493' => 'nnu', 'Nn1g03494' => 'nnu', 'Nn1g07164' => 'nnu', 'Nn1g07291' => 'nnu', 'Nn2g10655' => 'nnu', 'Nn2g11652' => 'nnu', 'Nn2g14008' => 'nnu', 'Nn3g17476' => 'nnu', 'Nn3g17477' => 'nnu', 'Nn4g22370' => 'nnu', 'Nn4g25255' => 'nnu', 'Nn5g27755' => 'nnu', 'Nn6g34260' => 'nnu', 'Nn6g35041' => 'nnu', 'Oeu005924.1' => 'oeu', 'Oeu008383.1' => 'oeu', 'Oeu014928.1' => 'oeu', 'Oeu019889.1' => 'oeu', 'Oeu022271.1' => 'oeu', 'Oeu025271.1' => 'oeu', 'Oeu036302.1' => 'oeu', 'Oeu044100.1' => 'oeu', 'Os01g0528300' => 'osa', 'Os03g0286200' => 'osa', 'Os04g0406600' => 'osa', 'Os07g0512000' => 'osa', 'Os07g0694600' => 'osa', 'Os08g0411000' => 'osa', 'Os09g0565700' => 'osa', 'Os09g0566050' => 'osa', 'Os10g0523700' => 'osa', 'Peaxi162Scf00002g00514' => 'pax', 'Peaxi162Scf00047g01817' => 'pax', 'Peaxi162Scf00114g00001' => 'pax', 'Peaxi162Scf00147g00613' => 'pax', 'Peaxi162Scf00389g00425' => 'pax', 'PGR042G1139' => 'pgr', 'PGR042G3273' => 'pgr', 'PGR102G2180' => 'pgr', 'PGR119G0234' => 'pgr', 'PGR119G0668' => 'pgr', 'PGSC0003DMG400007122' => 'stu', 'PGSC0003DMG400016478' => 'stu', 'PGSC0003DMG400025374' => 'stu', 'PGSC0003DMG400026536' => 'stu', 'Phvul.003G079600' => 'pvu', 'Phvul.005G115600' => 'pvu', 'Phvul.005G127100' => 'pvu', 'Phvul.006G149500' => 'pvu', 'Phvul.006G149600' => 'pvu', 'Phvul.011G071800' => 'pvu', 'Phvul.011G090400' => 'pvu', 'Potri.004G013400' => 'ptr', 'Potri.004G188100' => 'ptr', 'Potri.008G195500' => 'ptr', 'Potri.009G148800' => 'ptr', 'Potri.011G004700' => 'ptr', 'Pp3c17_22810' => 'ppa', 'Pp3c18_4480' => 'ppa', 'Pp3c19_13030' => 'ppa', 'Pp3c1_33620' => 'ppa', 'Pp3c2_9380' => 'ppa', 'PRCOL_00001023' => 'pco', 'Prupe.3G216300' => 'ppe', 'Prupe.4G019500' => 'ppe', 'Prupe.6G092500' => 'ppe', 'Prupe.6G119200' => 'ppe', 'Psat0s1945g0080' => 'psa', 'Psat0s4167g0040' => 'psa', 'Psat1g185800' => 'psa', 'Psat4g006440' => 'psa', 'Psat4g006480' => 'psa', 'Psat4g168120' => 'psa', 'Psat5g255680' => 'psa', 'Psat5g261760' => 'psa', 'Psat7g222120' => 'psa', 'PSO063G7252' => 'pso', 'PSO170G4778' => 'pso', 'PSO210G2249' => 'pso', 'PSO339G2411' => 'pso', 'PSO339G2457' => 'pso', 'PSO339G2854' => 'pso', 'PSO339G4288' => 'pso', 'PSO339G4615' => 'pso', 'PSO384G2796' => 'pso', 'PSO384G2940' => 'pso', 'PSO384G4227' => 'pso', 'PSO478G1425' => 'pso', 'PSO541G3863' => 'pso', 'PSO675G0507' => 'pso', 'PSO782G0338' => 'pso', 'PSO832G0644' => 'pso', 'QL01p013664' => 'qlo', 'QL01p036598' => 'qlo', 'QL05p072984' => 'qlo', 'QL08p005768' => 'qlo', 'QL08p032743' => 'qlo', 'QL93p0073_0439' => 'qlo', 'QL93p0073_0444' => 'qlo', 'RcHm_v2.0_Chr5g0002851' => 'rch', 'RcHm_v2.0_Chr5g0055201' => 'rch', 'RcHm_v2.0_Chr5g0061191' => 'rch', 'RcHm_v2.0_Chr7g0203231' => 'rch', 'Rhsim01G0208100' => 'rsi', 'Rhsim01G0208200' => 'rsi', 'Rhsim02G0106500' => 'rsi', 'Rhsim03G0107900' => 'rsi', 'Rhsim06G0163400' => 'rsi', 'Rhsim13G0105200' => 'rsi', 'Sabra04G0006300' => 'sbr', 'Sabra04G0127000' => 'sbr', 'Sabra08G0148700' => 'sbr', 'Sabra09G0117400' => 'sbr', 'SalBow1G3326' => 'sbo', 'SalBow3G3228' => 'sbo', 'SalBow6G1634' => 'sbo', 'SalBow6G3603' => 'sbo', 'SalBow6G5266' => 'sbo', 'SalBow7G2265' => 'sbo', 'SalBow8G0850' => 'sbo', 'SalBow8G2592' => 'sbo', 'Sc05g0009240' => 'sci', 'Sc12g0002300' => 'sci', 'Sc21g0000100' => 'sci', 'Sc21g0004720' => 'sci', 'Sed0002949' => 'sed', 'Sed0004114' => 'sed', 'Sed0004306' => 'sed', 'Sed0006172' => 'sed', 'Sed0008413' => 'sed', 'Sed0013809' => 'sed', 'Sed0019556' => 'sed', 'SEGI_03570' => 'sgi', 'SEGI_07859' => 'sgi', 'SEGI_15042' => 'sgi', 'SEGI_16263' => 'sgi', 'SEGI_16552' => 'sgi', 'SEGI_24331' => 'sgi', 'SEGI_27316' => 'sgi', 'SEGI_29521' => 'sgi', 'SEGI_41342' => 'sgi', 'SGA_v2.0_scaffold27G11617' => 'sas', 'SGA_v2.0_scaffold316G48428' => 'sas', 'SGA_v2.0_scaffold49G18261' => 'sas', 'SGA_v2.0_scaffold7G03831' => 'sas', 'SGA_v2.0_scaffold93G28359' => 'sas', 'SHI02210' => 'shi', 'SHI06028' => 'shi', 'SHI06321' => 'shi', 'SMO111G0012' => 'smo', 'SMO228G0080' => 'smo', 'SMO356G0756' => 'smo', 'Solyc02g080620.3' => 'sly', 'Solyc06g074530.1' => 'sly', 'Solyc11g066890.1' => 'sly', 'Solyc11g072520.3' => 'sly', 'Sopen02g025330' => 'spe', 'Sopen06g031000' => 'spe', 'Sopen09g008240' => 'spe', 'Sopen09g025210' => 'spe', 'Sopen11g026600' => 'spe', 'Sopen11g030170' => 'spe', 'Sp1g10420' => 'spa', 'Sp3g06570' => 'spa', 'Sp4g10660' => 'spa', 'Sp5g16460' => 'spa', 'Sp6g22710' => 'spa', 'TAR365G0112' => 'tar', 'TAR369G0717' => 'tar', 'TAR374G0976' => 'tar', 'TAR623G1128' => 'tar', 'TAR626G1937' => 'tar', 'TAR627G0123' => 'tar', 'TAR628G0305' => 'tar', 'TAR636G1176' => 'tar', 'TAR636G2442' => 'tar', 'THA.LOC104800556' => 'tha', 'THA.LOC104809501' => 'tha', 'THA.LOC104815126' => 'tha', 'THA.LOC104815732' => 'tha', 'THA.LOC104823528' => 'tha', 'Thecc.02G365600' => 'tca', 'Thecc.06G222300' => 'tca', 'Thecc.09G261800' => 'tca', 'Thecc.09G291400' => 'tca', 'Thhalv10003028m.g' => 'esa', 'Thhalv10007886m.g' => 'esa', 'Thhalv10016085m.g' => 'esa', 'Thhalv10016681m.g' => 'esa', 'Thhalv10020951m.g' => 'esa', 'TPR.G15598' => 'tpr', 'TPR.G29305' => 'tpr', 'TPR.G32395' => 'tpr', 'TPR.G36998' => 'tpr', 'TPR.G4227' => 'tpr', 'TWI18G1433' => 'twi', 'TWI31G0755' => 'twi', 'TWI38G0912' => 'twi', 'TWI75G1097' => 'twi', 'TWI75G1619' => 'twi', 'TWI79G1336' => 'twi', 'unitig_0.g943' => 'ugi', 'unitig_0.g944' => 'ugi', 'unitig_22.g6646' => 'ugi', 'unitig_37.g12681' => 'ugi', 'unitig_8.g3290' => 'ugi', 'vmacro03278' => 'vma', 'vmacro12197' => 'vma', 'vmacro14478' => 'vma', 'vmacro15787' => 'vma', 'vmacro15789' => 'vma', 'vmacro15790' => 'vma', 'vmacro15806' => 'vma', 'vmacro22907' => 'vma', 'vmacro22908' => 'vma', 'vmacro22909' => 'vma', 'vmacro23108' => 'vma', 'VMungo0540G0540' => 'vmu', 'VMungo0540G2468' => 'vmu', 'VMungo1080G0390' => 'vmu', 'VMungo1080G1165' => 'vmu', 'VMungo1127G0170' => 'vmu', 'VMungo1127G2099' => 'vmu', 'VMungo1215G3013' => 'vmu', 'Zm00001eb013110' => 'zma', 'Zm00001eb084260' => 'zma', 'Zm00001eb096110' => 'zma', 'Zm00001eb217510' => 'zma', 'Zm00001eb322550' => 'zma', 'Zm00001eb390770' => 'zma', 'Zm00001eb397170' => 'zma', 'Zm00001eb404610' => 'zma', 'Zm00001eb421790' => 'zma' ) $gf_id = 'HOM05D000911' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000911' ) $data_identifier = 'HOM05D000911' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 16, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 5, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 6, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 8, 'nnu' => (int) 16, 'oeu' => (int) 8, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 5, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 16, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421790' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000911', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27780' => 'bna', 'A03p35380' => 'bna', 'A04p21160' => 'bna', 'A05p40570' => 'bna', 'A06p26900' => 'bna', 'A08p33230' => 'bna', 'A09p65960' => 'bna', 'A10p18290' => 'bna', 'Aa31LG1G12990' => 'aar', 'Aa31LG1G2980' => 'aar', 'Aa31LG4G14320' => 'aar', 'Aa31LG7G11800' => 'aar', 'Aa31sc36G50' => 'aar', 'Aa31sc36G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3721' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5459' => 'aag', 'Actinidia03028' => 'ach', 'Actinidia03753' => 'ach', 'Actinidia04187' => 'ach', 'Actinidia05509' => 'ach', 'Actinidia24180' => 'ach', 'Actinidia26906' => 'ach', 'Actinidia37097' => 'ach', 'Actinidia38249' => 'ach', 'Ah.01g003470' => 'amhyb', 'Ah.01g004580' => 'amhyb', 'Ah.01g014850' => 'amhyb', 'Ah.01g016830' => 'amhyb', 'Ah.14g088000' => 'amhyb', 'AL1G22980' => 'aly', 'AL3G18990' => 'aly', 'AL4G22440' => 'aly', 'AL4G33180' => 'aly', 'AL5G22920' => 'aly', 'AL6G33660' => 'aly', 'AL8G20720' => 'aly', 'Aqoxy1G00935' => 'aox', 'Aqoxy1G02094' => 'aox', 'Aqoxy2G01239' => 'aox', 'Aqoxy4G01870' => 'aox', 'Aqoxy7G00450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.36ZVTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71EM27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5D6C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH3WRE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3NCM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RIM768' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YB5YRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z36GDV' => 'arhy', 'AT1G08250' => 'ath', 'AT1G11790' => 'ath', 'AT2G27820' => 'ath', 'AT3G07630' => 'ath', 'AT3G44720' => 'ath', 'AT5G22630' => 'ath', 'ATR0693G304' => 'atr', 'ATR0794G109' => 'atr', 'ATR0820G120' => 'atr', 'ATR1159G064' => 'atr', 'Atru.chr10.2239' => 'acertr', 'Atru.chr3.3371' => 'acertr', 'Atru.chr6.3202' => 'acertr', 'AUR62006499' => 'cqu', 'AUR62012718' => 'cqu', 'AUR62021938' => 'cqu', 'AUR62023932' => 'cqu', 'AUR62025034' => 'cqu', 'AUR62025035' => 'cqu', 'AUR62038307' => 'cqu', 'AUR62043466' => 'cqu', 'BcaB02g10748' => 'bca', 'BcaB03g13231' => 'bca', 'BcaB03g14689' => 'bca', 'BcaB05g22716' => 'bca', 'BcaB06g28172' => 'bca', 'BcaB08g36413' => 'bca', 'BcaC01g02186' => 'bca', 'BcaC01g04272' => 'bca', 'BcaC02g08080' => 'bca', 'BcaC02g08227' => 'bca', 'BcaC03g13901' => 'bca', 'BcaC04g19593' => 'bca', 'BcaC04g20874' => 'bca', 'BcaC05g29557' => 'bca', 'BcaC06g35505' => 'bca', 'BcaC07g41954' => 'bca', 'BcaC07g41955' => 'bca', 'BcaC07g41956' => 'bca', 'BcaC07g42519' => 'bca', 'BcaC07g42520' => 'bca', 'BcaC07g42523' => 'bca', 'BcaC07g42524' => 'bca', 'BcaC07g42525' => 'bca', 'BcaC08g47480' => 'bca', 'BcaC08g47481' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00530' => 'bna', 'BolC2t07178H' => 'bol', 'BolC3t16567H' => 'bol', 'BolC4t27234H' => 'bol', 'BolC5t29728H' => 'bol', 'BolC5t34622H' => 'bol', 'BolC6t40321H' => 'bol', 'BolC7t42028H' => 'bol', 'BolC8t49125H' => 'bol', 'BolC8t52538H' => 'bol', 'BolC8t52539H' => 'bol', 'BolC9t56681H' => 'bol', 'BolC9t58266H' => 'bol', 'BolSC21t60294H' => 'bol', 'BraA02t05670Z' => 'bra', 'BraA03t12716Z' => 'bra', 'BraA04t17685Z' => 'bra', 'BraA05t22788Z' => 'bra', 'BraA06t24032Z' => 'bra', 'BraA06t25625Z' => 'bra', 'BraA07t27930Z' => 'bra', 'BraA08t35242Z' => 'bra', 'BraA09t38609Z' => 'bra', 'BraA10t43905Z' => 'bra', 'C02p11060' => 'bna', 'C03p42990' => 'bna', 'C03p67310' => 'bna', 'C04p56990' => 'bna', 'C04p58660' => 'bna', 'C05p09890' => 'bna', 'C05p59680' => 'bna', 'C06p19830' => 'bna', 'C06p53040' => 'bna', 'C07p15230' => 'bna', 'C08p50070' => 'bna', 'C08p50090' => 'bna', 'C09p38330' => 'bna', 'C09p53940' => 'bna', 'CAN.G1014.1' => 'can', 'CAN.G644.30' => 'can', 'CAN.G84.47' => 'can', 'CAN.G919.8' => 'can', 'CANSAT54G0113' => 'cansat', 'CANSAT54G1286' => 'cansat', 'CANSAT64G1020' => 'cansat', 'CARHR008080' => 'chi', 'CARHR008090' => 'chi', 'CARHR012130' => 'chi', 'CARHR038390' => 'chi', 'CARHR082330' => 'chi', 'CARHR120520' => 'chi', 'CARHR151470' => 'chi', 'CARHR190950' => 'chi', 'Carub.0001s0760' => 'cru', 'Carub.0001s1146' => 'cru', 'Carub.0003s0721' => 'cru', 'Carub.0004s0858' => 'cru', 'Carub.0005s1040' => 'cru', 'Carub.0006s2035' => 'cru', 'Carub.0015s0005' => 'cru', 'Ca_01607_v3' => 'car', 'Ca_01677_v3' => 'car', 'Ca_06087_v3' => 'car', 'Ca_19238_v3' => 'car', 'Ca_19373_v3' => 'car', 'Ca_21079_v3' => 'car', 'CBR_g54016' => 'cbr', 'CBR_g54018' => 'cbr', 'CBR_g54020' => 'cbr', 'Cc01_g09780' => 'ccan', 'Cc01_g11680' => 'ccan', 'Cc02_g15610' => 'ccan', 'Cc05_g04350' => 'ccan', 'Cc09_g01580' => 'ccan', 'CDE01G0795' => 'cde', 'CDE02G2024' => 'cde', 'CDE02G2260' => 'cde', 'CDE02G4561' => 'cde', 'CDE05G2733' => 'cde', 'CDE05G3422' => 'cde', 'CDE06G2003' => 'cde', 'CDE08G0576' => 'cde', 'CDE09G0048' => 'cde', 'CDE11G0805' => 'cde', 'Cfa003644' => 'cfa', 'Cfa006290' => 'cfa', 'Cfa010080' => 'cfa', 'Cfa011376' => 'cfa', 'Cfa011576' => 'cfa', 'Cfa011577' => 'cfa', 'Cfa014389' => 'cfa', 'Ciclev10006044m.g' => 'ccl', 'Ciclev10006954m.g' => 'ccl', 'Ciclev10015131m.g' => 'ccl', 'Ciclev10015580m.g' => 'ccl', 'Ciclev10028359m.g' => 'ccl', 'Ciclev10028573m.g' => 'ccl', 'CiPaw.03G159300' => 'cil', 'CiPaw.04G115100' => 'cil', 'CiPaw.09G092800' => 'cil', 'CiPaw.10G071800' => 'cil', 'CiPaw.13G105800' => 'cil', 'CiPaw.13G141000' => 'cil', 'CiPaw.14G103400' => 'cil', 'ClCG01G012700' => 'cla', 'ClCG01G012720' => 'cla', 'ClCG01G021920' => 'cla', 'ClCG02G008870' => 'cla', 'ClCG02G020840' => 'cla', 'ClCG02G021930' => 'cla', 'COL.COLO4_19302' => 'col', 'COL.COLO4_25262' => 'col', 'COL.COLO4_31788' => 'col', 'Cpa.g.c34684' => 'cpa', 'Cpa.g.c36520.1' => 'cpa', 'Cpa.g.c45626' => 'cpa', 'Cpa.g.sc121.17' => 'cpa', 'Cpa.g.sc13.22' => 'cpa', 'Cpa.g.sc87.88' => 'cpa', 'Cre06.g261800' => 'cre', 'CsaV3_1G014500' => 'csa', 'CsaV3_1G014510' => 'csa', 'CsaV3_2G034880' => 'csa', 'CsaV3_6G014760' => 'csa', 'CsaV3_6G021500' => 'csa', 'CsaV3_6G048980' => 'csa', 'CSS0002511' => 'camsi', 'CSS0007556' => 'camsi', 'CSS0008532' => 'camsi', 'CSS0009709' => 'camsi', 'CSS0010486' => 'camsi', 'CSS0016768' => 'camsi', 'CSS0023512' => 'camsi', 'CSS0025341' => 'camsi', 'CSS0027999' => 'camsi', 'CSS0028944' => 'camsi', 'CSS0032292' => 'camsi', 'CSS0032464' => 'camsi', 'CSS0037153' => 'camsi', 'CSS0039256' => 'camsi', 'CSS0048392' => 'camsi', 'CSS0050458' => 'camsi', 'DCAR_004224' => 'dca', 'DCAR_006147' => 'dca', 'DCAR_006465' => 'dca', 'DCAR_008159' => 'dca', 'DCAR_012164' => 'dca', 'DCAR_019764' => 'dca', 'Dinv05418' => 'din', 'Dinv10839' => 'din', 'Dinv12521' => 'din', 'Dinv13900' => 'din', 'Dinv29426' => 'din', 'Duzib150G0263' => 'dzi', 'Duzib168G1178' => 'dzi', 'Duzib168G1924' => 'dzi', 'Duzib170G0299' => 'dzi', 'Duzib170G0813' => 'dzi', 'Duzib235G1128' => 'dzi', 'Duzib248G1060' => 'dzi', 'ECA232G1910' => 'eca', 'ECA233G4621' => 'eca', 'ECA238G1216' => 'eca', 'ECA238G1784' => 'eca', 'ECA248G1242' => 'eca', 'EL10Ac8g20071' => 'bvu', 'EL10Ac9g21086' => 'bvu', 'EL10Ac9g22407' => 'bvu', 'EL10Ac9g22412' => 'bvu', 'Eucgr.A01119' => 'egr', 'Eucgr.E04043' => 'egr', 'Eucgr.J00428' => 'egr', 'Eucgr.J00958' => 'egr', 'FAN11G3091' => 'fan', 'FAN11G3651' => 'fan', 'FAN16G2566' => 'fan', 'FAN21G3155' => 'fan', 'FAN21G3400' => 'fan', 'FAN21G3543' => 'fan', 'FAN25G0234' => 'fan', 'FAN25G1422' => 'fan', 'FAN25G3392' => 'fan', 'FvH4_3g01940' => 'fve', 'FvH4_3g29870' => 'fve', 'FvH4_3g33680' => 'fve', 'Glyma.09G004200' => 'gma', 'Glyma.11G151288' => 'gma', 'Glyma.11G189100' => 'gma', 'Glyma.12G072500' => 'gma', 'Glyma.12G085500' => 'gma', 'Glyma.12G181800' => 'gma', 'Glyma.12G193000' => 'gma', 'Glyma.13G309300' => 'gma', 'Glyma.13G319000' => 'gma', 'Glyma.17G012600' => 'gma', 'Gohir.A06G148600' => 'ghi', 'Gohir.A07G115800' => 'ghi', 'Gohir.A08G003600' => 'ghi', 'Gohir.A09G093300' => 'ghi', 'Gohir.A09G105400' => 'ghi', 'Gohir.A09G105500' => 'ghi', 'Gohir.D06G154600' => 'ghi', 'Gohir.D07G120200' => 'ghi', 'Gohir.D08G013900' => 'ghi', 'Gohir.D09G093100' => 'ghi', 'Gohir.D09G102200' => 'ghi', 'Gohir.D09G102300' => 'ghi', 'Gorai.001G129400' => 'gra', 'Gorai.004G008200' => 'gra', 'Gorai.006G109800' => 'gra', 'Gorai.006G119500' => 'gra', 'Gorai.006G121300' => 'gra', 'Gorai.010G180700' => 'gra', 'GSVIVG01012716001' => 'vvi', 'GSVIVG01025118001' => 'vvi', 'GSVIVG01030439001' => 'vvi', 'GSVIVG01031397001' => 'vvi', 'HanXRQChr01g0004201' => 'han', 'HanXRQChr02g0054941' => 'han', 'HanXRQChr05g0141811' => 'han', 'HanXRQChr07g0197751' => 'han', 'HanXRQChr11g0346691' => 'han', 'HanXRQChr13g0396971' => 'han', 'HanXRQChr14g0432951' => 'han', 'HanXRQChr14g0452001' => 'han', 'HanXRQChr15g0496681' => 'han', 'HanXRQChr17g0557491' => 'han', 'HanXRQChr17g0557501' => 'han', 'Haze_06809' => 'cav', 'Haze_12852' => 'cav', 'Haze_15850' => 'cav', 'Haze_23446' => 'cav', 'Haze_23942' => 'cav', 'Haze_23943' => 'cav', 'Hma1.2p1_0091F.1_g046450' => 'hma', 'Hma1.2p1_0128F.1_g059910' => 'hma', 'Hma1.2p1_0249F.1_g102260' => 'hma', 'Hma1.2p1_0453F.1_g156190' => 'hma', 'Hma1.2p1_0695F.1_g204380' => 'hma', 'Hma1.2p1_0749F.1_g212650' => 'hma', 'Hma1.2p1_2156F.1_g315420' => 'hma', 'Hma1.2p1_2686F.1_g326940' => 'hma', 'HPP92_006428' => 'vpl', 'HPP92_012069' => 'vpl', 'HPP92_014129' => 'vpl', 'HPP92_014133' => 'vpl', 'HPP92_017315' => 'vpl', 'HPP92_026445' => 'vpl', 'HPP92_026446' => 'vpl', 'Hund00774' => 'sun', 'Hund07682' => 'sun', 'Hund21413' => 'sun', 'Hund23462' => 'sun', 'Hund23463' => 'sun', 'Lalb_Chr03g0027911' => 'lal', 'Lalb_Chr13g0304271' => 'lal', 'Lalb_Chr19g0137471' => 'lal', 'Lalb_Chr22g0350651' => 'lal', 'Lalb_Chr24g0395151' => 'lal', 'Lj1A1231T40' => 'lonja', 'Lj1A221T48' => 'lonja', 'Lj1C924T12' => 'lonja', 'Lj2C993G6' => 'lonja', 'Lj3g0005790' => 'lja', 'Lj3g0015432' => 'lja', 'Lj3g0017722' => 'lja', 'Lj3g0018497' => 'lja', 'Lj4g0025071' => 'lja', 'Lsat_1_v5_gn_1_129680' => 'lsa', 'Lsat_1_v5_gn_2_25321' => 'lsa', 'Lsat_1_v5_gn_2_95461' => 'lsa', 'Lsat_1_v5_gn_4_159620' => 'lsa', 'Lsat_1_v5_gn_6_41301' => 'lsa', 'Lsat_1_v5_gn_6_74660' => 'lsa', 'Lsat_1_v5_gn_7_11520' => 'lsa', 'Lsat_1_v5_gn_9_67680' => 'lsa', 'Manes.04G008300' => 'mes', 'Manes.04G008400' => 'mes', 'Manes.04G026500' => 'mes', 'Manes.10G135300' => 'mes', 'Manes.11G157300' => 'mes', 'Manes.12G074000' => 'mes', 'Manes.16G006200' => 'mes', 'Manes.17G026400' => 'mes', 'Mapoly0024s0086' => 'mpo', 'Mapoly0024s0087' => 'mpo', 'Mapoly0071s0057' => 'mpo', 'Mapoly0204s0012' => 'mpo', 'MBI04_g37681_MAGBIO' => 'mbi', 'MBI05_g17779_MAGBIO' => 'mbi', 'MBI12_g31184_MAGBIO' => 'mbi', 'MBI17_g11083_MAGBIO' => 'mbi', 'MBI18_g03883_MAGBIO' => 'mbi', 'MBI18_g28940_MAGBIO' => 'mbi', 'MCO01G690' => 'mco', 'MD03G1109900' => 'mdo', 'MD03G1134800' => 'mdo', 'MD05G1348000' => 'mdo', 'MD10G1322400' => 'mdo', 'MD11G1123300' => 'mdo', 'MD11G1157600' => 'mdo', 'Medtr2g084875' => 'mtr', 'Medtr2g088130' => 'mtr', 'Medtr4g055310' => 'mtr', 'Medtr4g061070' => 'mtr', 'Medtr4g132250' => 'mtr', 'MELO3C004795.2' => 'cme', 'MELO3C004797.2' => 'cme', 'MELO3C007396.2' => 'cme', 'MELO3C019277.2' => 'cme', 'MELO3C021449.2' => 'cme', 'MELO3C025736.2' => 'cme', 'Migut.D02175' => 'egut', 'Migut.H01573' => 'egut', 'Migut.M01327' => 'egut', 'Migut.N02513' => 'egut', 'MSTRG.14638' => 'ama', 'MSTRG.18632' => 'ama', 'MSTRG.7203' => 'ama', 'Nitab4.5_0000533g0140' => 'nta', 'Nitab4.5_0000888g0150' => 'nta', 'Nitab4.5_0001453g0040' => 'nta', 'Nitab4.5_0002827g0090' => 'nta', 'Nitab4.5_0003082g0040' => 'nta', 'Nitab4.5_0007799g0040' => 'nta', 'Nitab4.5_0008983g0010' => 'nta', 'Nitab4.5_0009017g0020' => 'nta', 'Nn1g02132' => 'nnu', 'Nn1g03492' => 'nnu', 'Nn1g03493' => 'nnu', 'Nn1g03494' => 'nnu', 'Nn1g07164' => 'nnu', 'Nn1g07291' => 'nnu', 'Nn2g10655' => 'nnu', 'Nn2g11652' => 'nnu', 'Nn2g14008' => 'nnu', 'Nn3g17476' => 'nnu', 'Nn3g17477' => 'nnu', 'Nn4g22370' => 'nnu', 'Nn4g25255' => 'nnu', 'Nn5g27755' => 'nnu', 'Nn6g34260' => 'nnu', 'Nn6g35041' => 'nnu', 'Oeu005924.1' => 'oeu', 'Oeu008383.1' => 'oeu', 'Oeu014928.1' => 'oeu', 'Oeu019889.1' => 'oeu', 'Oeu022271.1' => 'oeu', 'Oeu025271.1' => 'oeu', 'Oeu036302.1' => 'oeu', 'Oeu044100.1' => 'oeu', 'Os01g0528300' => 'osa', 'Os03g0286200' => 'osa', 'Os04g0406600' => 'osa', 'Os07g0512000' => 'osa', 'Os07g0694600' => 'osa', 'Os08g0411000' => 'osa', 'Os09g0565700' => 'osa', 'Os09g0566050' => 'osa', 'Os10g0523700' => 'osa', 'Peaxi162Scf00002g00514' => 'pax', 'Peaxi162Scf00047g01817' => 'pax', 'Peaxi162Scf00114g00001' => 'pax', 'Peaxi162Scf00147g00613' => 'pax', 'Peaxi162Scf00389g00425' => 'pax', 'PGR042G1139' => 'pgr', 'PGR042G3273' => 'pgr', 'PGR102G2180' => 'pgr', 'PGR119G0234' => 'pgr', 'PGR119G0668' => 'pgr', 'PGSC0003DMG400007122' => 'stu', 'PGSC0003DMG400016478' => 'stu', 'PGSC0003DMG400025374' => 'stu', 'PGSC0003DMG400026536' => 'stu', 'Phvul.003G079600' => 'pvu', 'Phvul.005G115600' => 'pvu', 'Phvul.005G127100' => 'pvu', 'Phvul.006G149500' => 'pvu', 'Phvul.006G149600' => 'pvu', 'Phvul.011G071800' => 'pvu', 'Phvul.011G090400' => 'pvu', 'Potri.004G013400' => 'ptr', 'Potri.004G188100' => 'ptr', 'Potri.008G195500' => 'ptr', 'Potri.009G148800' => 'ptr', 'Potri.011G004700' => 'ptr', 'Pp3c17_22810' => 'ppa', 'Pp3c18_4480' => 'ppa', 'Pp3c19_13030' => 'ppa', 'Pp3c1_33620' => 'ppa', 'Pp3c2_9380' => 'ppa', 'PRCOL_00001023' => 'pco', 'Prupe.3G216300' => 'ppe', 'Prupe.4G019500' => 'ppe', 'Prupe.6G092500' => 'ppe', 'Prupe.6G119200' => 'ppe', 'Psat0s1945g0080' => 'psa', 'Psat0s4167g0040' => 'psa', 'Psat1g185800' => 'psa', 'Psat4g006440' => 'psa', 'Psat4g006480' => 'psa', 'Psat4g168120' => 'psa', 'Psat5g255680' => 'psa', 'Psat5g261760' => 'psa', 'Psat7g222120' => 'psa', 'PSO063G7252' => 'pso', 'PSO170G4778' => 'pso', 'PSO210G2249' => 'pso', 'PSO339G2411' => 'pso', 'PSO339G2457' => 'pso', 'PSO339G2854' => 'pso', 'PSO339G4288' => 'pso', 'PSO339G4615' => 'pso', 'PSO384G2796' => 'pso', 'PSO384G2940' => 'pso', 'PSO384G4227' => 'pso', 'PSO478G1425' => 'pso', 'PSO541G3863' => 'pso', 'PSO675G0507' => 'pso', 'PSO782G0338' => 'pso', 'PSO832G0644' => 'pso', 'QL01p013664' => 'qlo', 'QL01p036598' => 'qlo', 'QL05p072984' => 'qlo', 'QL08p005768' => 'qlo', 'QL08p032743' => 'qlo', 'QL93p0073_0439' => 'qlo', 'QL93p0073_0444' => 'qlo', 'RcHm_v2.0_Chr5g0002851' => 'rch', 'RcHm_v2.0_Chr5g0055201' => 'rch', 'RcHm_v2.0_Chr5g0061191' => 'rch', 'RcHm_v2.0_Chr7g0203231' => 'rch', 'Rhsim01G0208100' => 'rsi', 'Rhsim01G0208200' => 'rsi', 'Rhsim02G0106500' => 'rsi', 'Rhsim03G0107900' => 'rsi', 'Rhsim06G0163400' => 'rsi', 'Rhsim13G0105200' => 'rsi', 'Sabra04G0006300' => 'sbr', 'Sabra04G0127000' => 'sbr', 'Sabra08G0148700' => 'sbr', 'Sabra09G0117400' => 'sbr', 'SalBow1G3326' => 'sbo', 'SalBow3G3228' => 'sbo', 'SalBow6G1634' => 'sbo', 'SalBow6G3603' => 'sbo', 'SalBow6G5266' => 'sbo', 'SalBow7G2265' => 'sbo', 'SalBow8G0850' => 'sbo', 'SalBow8G2592' => 'sbo', 'Sc05g0009240' => 'sci', 'Sc12g0002300' => 'sci', 'Sc21g0000100' => 'sci', 'Sc21g0004720' => 'sci', 'Sed0002949' => 'sed', 'Sed0004114' => 'sed', 'Sed0004306' => 'sed', 'Sed0006172' => 'sed', 'Sed0008413' => 'sed', 'Sed0013809' => 'sed', 'Sed0019556' => 'sed', 'SEGI_03570' => 'sgi', 'SEGI_07859' => 'sgi', 'SEGI_15042' => 'sgi', 'SEGI_16263' => 'sgi', 'SEGI_16552' => 'sgi', 'SEGI_24331' => 'sgi', 'SEGI_27316' => 'sgi', 'SEGI_29521' => 'sgi', 'SEGI_41342' => 'sgi', 'SGA_v2.0_scaffold27G11617' => 'sas', 'SGA_v2.0_scaffold316G48428' => 'sas', 'SGA_v2.0_scaffold49G18261' => 'sas', 'SGA_v2.0_scaffold7G03831' => 'sas', 'SGA_v2.0_scaffold93G28359' => 'sas', 'SHI02210' => 'shi', 'SHI06028' => 'shi', 'SHI06321' => 'shi', 'SMO111G0012' => 'smo', 'SMO228G0080' => 'smo', 'SMO356G0756' => 'smo', 'Solyc02g080620.3' => 'sly', 'Solyc06g074530.1' => 'sly', 'Solyc11g066890.1' => 'sly', 'Solyc11g072520.3' => 'sly', 'Sopen02g025330' => 'spe', 'Sopen06g031000' => 'spe', 'Sopen09g008240' => 'spe', 'Sopen09g025210' => 'spe', 'Sopen11g026600' => 'spe', 'Sopen11g030170' => 'spe', 'Sp1g10420' => 'spa', 'Sp3g06570' => 'spa', 'Sp4g10660' => 'spa', 'Sp5g16460' => 'spa', 'Sp6g22710' => 'spa', 'TAR365G0112' => 'tar', 'TAR369G0717' => 'tar', 'TAR374G0976' => 'tar', 'TAR623G1128' => 'tar', 'TAR626G1937' => 'tar', 'TAR627G0123' => 'tar', 'TAR628G0305' => 'tar', 'TAR636G1176' => 'tar', 'TAR636G2442' => 'tar', 'THA.LOC104800556' => 'tha', 'THA.LOC104809501' => 'tha', 'THA.LOC104815126' => 'tha', 'THA.LOC104815732' => 'tha', 'THA.LOC104823528' => 'tha', 'Thecc.02G365600' => 'tca', 'Thecc.06G222300' => 'tca', 'Thecc.09G261800' => 'tca', 'Thecc.09G291400' => 'tca', 'Thhalv10003028m.g' => 'esa', 'Thhalv10007886m.g' => 'esa', 'Thhalv10016085m.g' => 'esa', 'Thhalv10016681m.g' => 'esa', 'Thhalv10020951m.g' => 'esa', 'TPR.G15598' => 'tpr', 'TPR.G29305' => 'tpr', 'TPR.G32395' => 'tpr', 'TPR.G36998' => 'tpr', 'TPR.G4227' => 'tpr', 'TWI18G1433' => 'twi', 'TWI31G0755' => 'twi', 'TWI38G0912' => 'twi', 'TWI75G1097' => 'twi', 'TWI75G1619' => 'twi', 'TWI79G1336' => 'twi', 'unitig_0.g943' => 'ugi', 'unitig_0.g944' => 'ugi', 'unitig_22.g6646' => 'ugi', 'unitig_37.g12681' => 'ugi', 'unitig_8.g3290' => 'ugi', 'vmacro03278' => 'vma', 'vmacro12197' => 'vma', 'vmacro14478' => 'vma', 'vmacro15787' => 'vma', 'vmacro15789' => 'vma', 'vmacro15790' => 'vma', 'vmacro15806' => 'vma', 'vmacro22907' => 'vma', 'vmacro22908' => 'vma', 'vmacro22909' => 'vma', 'vmacro23108' => 'vma', 'VMungo0540G0540' => 'vmu', 'VMungo0540G2468' => 'vmu', 'VMungo1080G0390' => 'vmu', 'VMungo1080G1165' => 'vmu', 'VMungo1127G0170' => 'vmu', 'VMungo1127G2099' => 'vmu', 'VMungo1215G3013' => 'vmu', 'Zm00001eb013110' => 'zma', 'Zm00001eb084260' => 'zma', 'Zm00001eb096110' => 'zma', 'Zm00001eb217510' => 'zma', 'Zm00001eb322550' => 'zma', 'Zm00001eb390770' => 'zma', 'Zm00001eb397170' => 'zma', 'Zm00001eb404610' => 'zma', 'Zm00001eb421790' => 'zma' ), 'gf_id' => 'HOM05D000911', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000911' ), 'data_identifier' => 'HOM05D000911', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000911', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27780' => 'bna', 'A03p35380' => 'bna', 'A04p21160' => 'bna', 'A05p40570' => 'bna', 'A06p26900' => 'bna', 'A08p33230' => 'bna', 'A09p65960' => 'bna', 'A10p18290' => 'bna', 'Aa31LG1G12990' => 'aar', 'Aa31LG1G2980' => 'aar', 'Aa31LG4G14320' => 'aar', 'Aa31LG7G11800' => 'aar', 'Aa31sc36G50' => 'aar', 'Aa31sc36G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3721' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5459' => 'aag', 'Actinidia03028' => 'ach', 'Actinidia03753' => 'ach', 'Actinidia04187' => 'ach', 'Actinidia05509' => 'ach', 'Actinidia24180' => 'ach', 'Actinidia26906' => 'ach', 'Actinidia37097' => 'ach', 'Actinidia38249' => 'ach', 'Ah.01g003470' => 'amhyb', 'Ah.01g004580' => 'amhyb', 'Ah.01g014850' => 'amhyb', 'Ah.01g016830' => 'amhyb', 'Ah.14g088000' => 'amhyb', 'AL1G22980' => 'aly', 'AL3G18990' => 'aly', 'AL4G22440' => 'aly', 'AL4G33180' => 'aly', 'AL5G22920' => 'aly', 'AL6G33660' => 'aly', 'AL8G20720' => 'aly', 'Aqoxy1G00935' => 'aox', 'Aqoxy1G02094' => 'aox', 'Aqoxy2G01239' => 'aox', 'Aqoxy4G01870' => 'aox', 'Aqoxy7G00450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.36ZVTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71EM27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5D6C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH3WRE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3NCM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RIM768' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YB5YRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z36GDV' => 'arhy', 'AT1G08250' => 'ath', 'AT1G11790' => 'ath', 'AT2G27820' => 'ath', 'AT3G07630' => 'ath', 'AT3G44720' => 'ath', 'AT5G22630' => 'ath', 'ATR0693G304' => 'atr', 'ATR0794G109' => 'atr', 'ATR0820G120' => 'atr', 'ATR1159G064' => 'atr', 'Atru.chr10.2239' => 'acertr', 'Atru.chr3.3371' => 'acertr', 'Atru.chr6.3202' => 'acertr', 'AUR62006499' => 'cqu', 'AUR62012718' => 'cqu', 'AUR62021938' => 'cqu', 'AUR62023932' => 'cqu', 'AUR62025034' => 'cqu', 'AUR62025035' => 'cqu', 'AUR62038307' => 'cqu', 'AUR62043466' => 'cqu', 'BcaB02g10748' => 'bca', 'BcaB03g13231' => 'bca', 'BcaB03g14689' => 'bca', 'BcaB05g22716' => 'bca', 'BcaB06g28172' => 'bca', 'BcaB08g36413' => 'bca', 'BcaC01g02186' => 'bca', 'BcaC01g04272' => 'bca', 'BcaC02g08080' => 'bca', 'BcaC02g08227' => 'bca', 'BcaC03g13901' => 'bca', 'BcaC04g19593' => 'bca', 'BcaC04g20874' => 'bca', 'BcaC05g29557' => 'bca', 'BcaC06g35505' => 'bca', 'BcaC07g41954' => 'bca', 'BcaC07g41955' => 'bca', 'BcaC07g41956' => 'bca', 'BcaC07g42519' => 'bca', 'BcaC07g42520' => 'bca', 'BcaC07g42523' => 'bca', 'BcaC07g42524' => 'bca', 'BcaC07g42525' => 'bca', 'BcaC08g47480' => 'bca', 'BcaC08g47481' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00530' => 'bna', 'BolC2t07178H' => 'bol', 'BolC3t16567H' => 'bol', 'BolC4t27234H' => 'bol', 'BolC5t29728H' => 'bol', 'BolC5t34622H' => 'bol', 'BolC6t40321H' => 'bol', 'BolC7t42028H' => 'bol', 'BolC8t49125H' => 'bol', 'BolC8t52538H' => 'bol', 'BolC8t52539H' => 'bol', 'BolC9t56681H' => 'bol', 'BolC9t58266H' => 'bol', 'BolSC21t60294H' => 'bol', 'BraA02t05670Z' => 'bra', 'BraA03t12716Z' => 'bra', 'BraA04t17685Z' => 'bra', 'BraA05t22788Z' => 'bra', 'BraA06t24032Z' => 'bra', 'BraA06t25625Z' => 'bra', 'BraA07t27930Z' => 'bra', 'BraA08t35242Z' => 'bra', 'BraA09t38609Z' => 'bra', 'BraA10t43905Z' => 'bra', 'C02p11060' => 'bna', 'C03p42990' => 'bna', 'C03p67310' => 'bna', 'C04p56990' => 'bna', 'C04p58660' => 'bna', 'C05p09890' => 'bna', 'C05p59680' => 'bna', 'C06p19830' => 'bna', 'C06p53040' => 'bna', 'C07p15230' => 'bna', 'C08p50070' => 'bna', 'C08p50090' => 'bna', 'C09p38330' => 'bna', 'C09p53940' => 'bna', 'CAN.G1014.1' => 'can', 'CAN.G644.30' => 'can', 'CAN.G84.47' => 'can', 'CAN.G919.8' => 'can', 'CANSAT54G0113' => 'cansat', 'CANSAT54G1286' => 'cansat', 'CANSAT64G1020' => 'cansat', 'CARHR008080' => 'chi', 'CARHR008090' => 'chi', 'CARHR012130' => 'chi', 'CARHR038390' => 'chi', 'CARHR082330' => 'chi', 'CARHR120520' => 'chi', 'CARHR151470' => 'chi', 'CARHR190950' => 'chi', 'Carub.0001s0760' => 'cru', 'Carub.0001s1146' => 'cru', 'Carub.0003s0721' => 'cru', 'Carub.0004s0858' => 'cru', 'Carub.0005s1040' => 'cru', 'Carub.0006s2035' => 'cru', 'Carub.0015s0005' => 'cru', 'Ca_01607_v3' => 'car', 'Ca_01677_v3' => 'car', 'Ca_06087_v3' => 'car', 'Ca_19238_v3' => 'car', 'Ca_19373_v3' => 'car', 'Ca_21079_v3' => 'car', 'CBR_g54016' => 'cbr', 'CBR_g54018' => 'cbr', 'CBR_g54020' => 'cbr', 'Cc01_g09780' => 'ccan', 'Cc01_g11680' => 'ccan', 'Cc02_g15610' => 'ccan', 'Cc05_g04350' => 'ccan', 'Cc09_g01580' => 'ccan', 'CDE01G0795' => 'cde', 'CDE02G2024' => 'cde', 'CDE02G2260' => 'cde', 'CDE02G4561' => 'cde', 'CDE05G2733' => 'cde', 'CDE05G3422' => 'cde', 'CDE06G2003' => 'cde', 'CDE08G0576' => 'cde', 'CDE09G0048' => 'cde', 'CDE11G0805' => 'cde', 'Cfa003644' => 'cfa', 'Cfa006290' => 'cfa', 'Cfa010080' => 'cfa', 'Cfa011376' => 'cfa', 'Cfa011576' => 'cfa', 'Cfa011577' => 'cfa', 'Cfa014389' => 'cfa', 'Ciclev10006044m.g' => 'ccl', 'Ciclev10006954m.g' => 'ccl', 'Ciclev10015131m.g' => 'ccl', 'Ciclev10015580m.g' => 'ccl', 'Ciclev10028359m.g' => 'ccl', 'Ciclev10028573m.g' => 'ccl', 'CiPaw.03G159300' => 'cil', 'CiPaw.04G115100' => 'cil', 'CiPaw.09G092800' => 'cil', 'CiPaw.10G071800' => 'cil', 'CiPaw.13G105800' => 'cil', 'CiPaw.13G141000' => 'cil', 'CiPaw.14G103400' => 'cil', 'ClCG01G012700' => 'cla', 'ClCG01G012720' => 'cla', 'ClCG01G021920' => 'cla', 'ClCG02G008870' => 'cla', 'ClCG02G020840' => 'cla', 'ClCG02G021930' => 'cla', 'COL.COLO4_19302' => 'col', 'COL.COLO4_25262' => 'col', 'COL.COLO4_31788' => 'col', 'Cpa.g.c34684' => 'cpa', 'Cpa.g.c36520.1' => 'cpa', 'Cpa.g.c45626' => 'cpa', 'Cpa.g.sc121.17' => 'cpa', 'Cpa.g.sc13.22' => 'cpa', 'Cpa.g.sc87.88' => 'cpa', 'Cre06.g261800' => 'cre', 'CsaV3_1G014500' => 'csa', 'CsaV3_1G014510' => 'csa', 'CsaV3_2G034880' => 'csa', 'CsaV3_6G014760' => 'csa', 'CsaV3_6G021500' => 'csa', 'CsaV3_6G048980' => 'csa', 'CSS0002511' => 'camsi', 'CSS0007556' => 'camsi', 'CSS0008532' => 'camsi', 'CSS0009709' => 'camsi', 'CSS0010486' => 'camsi', 'CSS0016768' => 'camsi', 'CSS0023512' => 'camsi', 'CSS0025341' => 'camsi', 'CSS0027999' => 'camsi', 'CSS0028944' => 'camsi', 'CSS0032292' => 'camsi', 'CSS0032464' => 'camsi', 'CSS0037153' => 'camsi', 'CSS0039256' => 'camsi', 'CSS0048392' => 'camsi', 'CSS0050458' => 'camsi', 'DCAR_004224' => 'dca', 'DCAR_006147' => 'dca', 'DCAR_006465' => 'dca', 'DCAR_008159' => 'dca', 'DCAR_012164' => 'dca', 'DCAR_019764' => 'dca', 'Dinv05418' => 'din', 'Dinv10839' => 'din', 'Dinv12521' => 'din', 'Dinv13900' => 'din', 'Dinv29426' => 'din', 'Duzib150G0263' => 'dzi', 'Duzib168G1178' => 'dzi', 'Duzib168G1924' => 'dzi', 'Duzib170G0299' => 'dzi', 'Duzib170G0813' => 'dzi', 'Duzib235G1128' => 'dzi', 'Duzib248G1060' => 'dzi', 'ECA232G1910' => 'eca', 'ECA233G4621' => 'eca', 'ECA238G1216' => 'eca', 'ECA238G1784' => 'eca', 'ECA248G1242' => 'eca', 'EL10Ac8g20071' => 'bvu', 'EL10Ac9g21086' => 'bvu', 'EL10Ac9g22407' => 'bvu', 'EL10Ac9g22412' => 'bvu', 'Eucgr.A01119' => 'egr', 'Eucgr.E04043' => 'egr', 'Eucgr.J00428' => 'egr', 'Eucgr.J00958' => 'egr', 'FAN11G3091' => 'fan', 'FAN11G3651' => 'fan', 'FAN16G2566' => 'fan', 'FAN21G3155' => 'fan', 'FAN21G3400' => 'fan', 'FAN21G3543' => 'fan', 'FAN25G0234' => 'fan', 'FAN25G1422' => 'fan', 'FAN25G3392' => 'fan', 'FvH4_3g01940' => 'fve', 'FvH4_3g29870' => 'fve', 'FvH4_3g33680' => 'fve', 'Glyma.09G004200' => 'gma', 'Glyma.11G151288' => 'gma', 'Glyma.11G189100' => 'gma', 'Glyma.12G072500' => 'gma', 'Glyma.12G085500' => 'gma', 'Glyma.12G181800' => 'gma', 'Glyma.12G193000' => 'gma', 'Glyma.13G309300' => 'gma', 'Glyma.13G319000' => 'gma', 'Glyma.17G012600' => 'gma', 'Gohir.A06G148600' => 'ghi', 'Gohir.A07G115800' => 'ghi', 'Gohir.A08G003600' => 'ghi', 'Gohir.A09G093300' => 'ghi', 'Gohir.A09G105400' => 'ghi', 'Gohir.A09G105500' => 'ghi', 'Gohir.D06G154600' => 'ghi', 'Gohir.D07G120200' => 'ghi', 'Gohir.D08G013900' => 'ghi', 'Gohir.D09G093100' => 'ghi', 'Gohir.D09G102200' => 'ghi', 'Gohir.D09G102300' => 'ghi', 'Gorai.001G129400' => 'gra', 'Gorai.004G008200' => 'gra', 'Gorai.006G109800' => 'gra', 'Gorai.006G119500' => 'gra', 'Gorai.006G121300' => 'gra', 'Gorai.010G180700' => 'gra', 'GSVIVG01012716001' => 'vvi', 'GSVIVG01025118001' => 'vvi', 'GSVIVG01030439001' => 'vvi', 'GSVIVG01031397001' => 'vvi', 'HanXRQChr01g0004201' => 'han', 'HanXRQChr02g0054941' => 'han', 'HanXRQChr05g0141811' => 'han', 'HanXRQChr07g0197751' => 'han', 'HanXRQChr11g0346691' => 'han', 'HanXRQChr13g0396971' => 'han', 'HanXRQChr14g0432951' => 'han', 'HanXRQChr14g0452001' => 'han', 'HanXRQChr15g0496681' => 'han', 'HanXRQChr17g0557491' => 'han', 'HanXRQChr17g0557501' => 'han', 'Haze_06809' => 'cav', 'Haze_12852' => 'cav', 'Haze_15850' => 'cav', 'Haze_23446' => 'cav', 'Haze_23942' => 'cav', 'Haze_23943' => 'cav', 'Hma1.2p1_0091F.1_g046450' => 'hma', 'Hma1.2p1_0128F.1_g059910' => 'hma', 'Hma1.2p1_0249F.1_g102260' => 'hma', 'Hma1.2p1_0453F.1_g156190' => 'hma', 'Hma1.2p1_0695F.1_g204380' => 'hma', 'Hma1.2p1_0749F.1_g212650' => 'hma', 'Hma1.2p1_2156F.1_g315420' => 'hma', 'Hma1.2p1_2686F.1_g326940' => 'hma', 'HPP92_006428' => 'vpl', 'HPP92_012069' => 'vpl', 'HPP92_014129' => 'vpl', 'HPP92_014133' => 'vpl', 'HPP92_017315' => 'vpl', 'HPP92_026445' => 'vpl', 'HPP92_026446' => 'vpl', 'Hund00774' => 'sun', 'Hund07682' => 'sun', 'Hund21413' => 'sun', 'Hund23462' => 'sun', 'Hund23463' => 'sun', 'Lalb_Chr03g0027911' => 'lal', 'Lalb_Chr13g0304271' => 'lal', 'Lalb_Chr19g0137471' => 'lal', 'Lalb_Chr22g0350651' => 'lal', 'Lalb_Chr24g0395151' => 'lal', 'Lj1A1231T40' => 'lonja', 'Lj1A221T48' => 'lonja', 'Lj1C924T12' => 'lonja', 'Lj2C993G6' => 'lonja', 'Lj3g0005790' => 'lja', 'Lj3g0015432' => 'lja', 'Lj3g0017722' => 'lja', 'Lj3g0018497' => 'lja', 'Lj4g0025071' => 'lja', 'Lsat_1_v5_gn_1_129680' => 'lsa', 'Lsat_1_v5_gn_2_25321' => 'lsa', 'Lsat_1_v5_gn_2_95461' => 'lsa', 'Lsat_1_v5_gn_4_159620' => 'lsa', 'Lsat_1_v5_gn_6_41301' => 'lsa', 'Lsat_1_v5_gn_6_74660' => 'lsa', 'Lsat_1_v5_gn_7_11520' => 'lsa', 'Lsat_1_v5_gn_9_67680' => 'lsa', 'Manes.04G008300' => 'mes', 'Manes.04G008400' => 'mes', 'Manes.04G026500' => 'mes', 'Manes.10G135300' => 'mes', 'Manes.11G157300' => 'mes', 'Manes.12G074000' => 'mes', 'Manes.16G006200' => 'mes', 'Manes.17G026400' => 'mes', 'Mapoly0024s0086' => 'mpo', 'Mapoly0024s0087' => 'mpo', 'Mapoly0071s0057' => 'mpo', 'Mapoly0204s0012' => 'mpo', 'MBI04_g37681_MAGBIO' => 'mbi', 'MBI05_g17779_MAGBIO' => 'mbi', 'MBI12_g31184_MAGBIO' => 'mbi', 'MBI17_g11083_MAGBIO' => 'mbi', 'MBI18_g03883_MAGBIO' => 'mbi', 'MBI18_g28940_MAGBIO' => 'mbi', 'MCO01G690' => 'mco', 'MD03G1109900' => 'mdo', 'MD03G1134800' => 'mdo', 'MD05G1348000' => 'mdo', 'MD10G1322400' => 'mdo', 'MD11G1123300' => 'mdo', 'MD11G1157600' => 'mdo', 'Medtr2g084875' => 'mtr', 'Medtr2g088130' => 'mtr', 'Medtr4g055310' => 'mtr', 'Medtr4g061070' => 'mtr', 'Medtr4g132250' => 'mtr', 'MELO3C004795.2' => 'cme', 'MELO3C004797.2' => 'cme', 'MELO3C007396.2' => 'cme', 'MELO3C019277.2' => 'cme', 'MELO3C021449.2' => 'cme', 'MELO3C025736.2' => 'cme', 'Migut.D02175' => 'egut', 'Migut.H01573' => 'egut', 'Migut.M01327' => 'egut', 'Migut.N02513' => 'egut', 'MSTRG.14638' => 'ama', 'MSTRG.18632' => 'ama', 'MSTRG.7203' => 'ama', 'Nitab4.5_0000533g0140' => 'nta', 'Nitab4.5_0000888g0150' => 'nta', 'Nitab4.5_0001453g0040' => 'nta', 'Nitab4.5_0002827g0090' => 'nta', 'Nitab4.5_0003082g0040' => 'nta', 'Nitab4.5_0007799g0040' => 'nta', 'Nitab4.5_0008983g0010' => 'nta', 'Nitab4.5_0009017g0020' => 'nta', 'Nn1g02132' => 'nnu', 'Nn1g03492' => 'nnu', 'Nn1g03493' => 'nnu', 'Nn1g03494' => 'nnu', 'Nn1g07164' => 'nnu', 'Nn1g07291' => 'nnu', 'Nn2g10655' => 'nnu', 'Nn2g11652' => 'nnu', 'Nn2g14008' => 'nnu', 'Nn3g17476' => 'nnu', 'Nn3g17477' => 'nnu', 'Nn4g22370' => 'nnu', 'Nn4g25255' => 'nnu', 'Nn5g27755' => 'nnu', 'Nn6g34260' => 'nnu', 'Nn6g35041' => 'nnu', 'Oeu005924.1' => 'oeu', 'Oeu008383.1' => 'oeu', 'Oeu014928.1' => 'oeu', 'Oeu019889.1' => 'oeu', 'Oeu022271.1' => 'oeu', 'Oeu025271.1' => 'oeu', 'Oeu036302.1' => 'oeu', 'Oeu044100.1' => 'oeu', 'Os01g0528300' => 'osa', 'Os03g0286200' => 'osa', 'Os04g0406600' => 'osa', 'Os07g0512000' => 'osa', 'Os07g0694600' => 'osa', 'Os08g0411000' => 'osa', 'Os09g0565700' => 'osa', 'Os09g0566050' => 'osa', 'Os10g0523700' => 'osa', 'Peaxi162Scf00002g00514' => 'pax', 'Peaxi162Scf00047g01817' => 'pax', 'Peaxi162Scf00114g00001' => 'pax', 'Peaxi162Scf00147g00613' => 'pax', 'Peaxi162Scf00389g00425' => 'pax', 'PGR042G1139' => 'pgr', 'PGR042G3273' => 'pgr', 'PGR102G2180' => 'pgr', 'PGR119G0234' => 'pgr', 'PGR119G0668' => 'pgr', 'PGSC0003DMG400007122' => 'stu', 'PGSC0003DMG400016478' => 'stu', 'PGSC0003DMG400025374' => 'stu', 'PGSC0003DMG400026536' => 'stu', 'Phvul.003G079600' => 'pvu', 'Phvul.005G115600' => 'pvu', 'Phvul.005G127100' => 'pvu', 'Phvul.006G149500' => 'pvu', 'Phvul.006G149600' => 'pvu', 'Phvul.011G071800' => 'pvu', 'Phvul.011G090400' => 'pvu', 'Potri.004G013400' => 'ptr', 'Potri.004G188100' => 'ptr', 'Potri.008G195500' => 'ptr', 'Potri.009G148800' => 'ptr', 'Potri.011G004700' => 'ptr', 'Pp3c17_22810' => 'ppa', 'Pp3c18_4480' => 'ppa', 'Pp3c19_13030' => 'ppa', 'Pp3c1_33620' => 'ppa', 'Pp3c2_9380' => 'ppa', 'PRCOL_00001023' => 'pco', 'Prupe.3G216300' => 'ppe', 'Prupe.4G019500' => 'ppe', 'Prupe.6G092500' => 'ppe', 'Prupe.6G119200' => 'ppe', 'Psat0s1945g0080' => 'psa', 'Psat0s4167g0040' => 'psa', 'Psat1g185800' => 'psa', 'Psat4g006440' => 'psa', 'Psat4g006480' => 'psa', 'Psat4g168120' => 'psa', 'Psat5g255680' => 'psa', 'Psat5g261760' => 'psa', 'Psat7g222120' => 'psa', 'PSO063G7252' => 'pso', 'PSO170G4778' => 'pso', 'PSO210G2249' => 'pso', 'PSO339G2411' => 'pso', 'PSO339G2457' => 'pso', 'PSO339G2854' => 'pso', 'PSO339G4288' => 'pso', 'PSO339G4615' => 'pso', 'PSO384G2796' => 'pso', 'PSO384G2940' => 'pso', 'PSO384G4227' => 'pso', 'PSO478G1425' => 'pso', 'PSO541G3863' => 'pso', 'PSO675G0507' => 'pso', 'PSO782G0338' => 'pso', 'PSO832G0644' => 'pso', 'QL01p013664' => 'qlo', 'QL01p036598' => 'qlo', 'QL05p072984' => 'qlo', 'QL08p005768' => 'qlo', 'QL08p032743' => 'qlo', 'QL93p0073_0439' => 'qlo', 'QL93p0073_0444' => 'qlo', 'RcHm_v2.0_Chr5g0002851' => 'rch', 'RcHm_v2.0_Chr5g0055201' => 'rch', 'RcHm_v2.0_Chr5g0061191' => 'rch', 'RcHm_v2.0_Chr7g0203231' => 'rch', 'Rhsim01G0208100' => 'rsi', 'Rhsim01G0208200' => 'rsi', 'Rhsim02G0106500' => 'rsi', 'Rhsim03G0107900' => 'rsi', 'Rhsim06G0163400' => 'rsi', 'Rhsim13G0105200' => 'rsi', 'Sabra04G0006300' => 'sbr', 'Sabra04G0127000' => 'sbr', 'Sabra08G0148700' => 'sbr', 'Sabra09G0117400' => 'sbr', 'SalBow1G3326' => 'sbo', 'SalBow3G3228' => 'sbo', 'SalBow6G1634' => 'sbo', 'SalBow6G3603' => 'sbo', 'SalBow6G5266' => 'sbo', 'SalBow7G2265' => 'sbo', 'SalBow8G0850' => 'sbo', 'SalBow8G2592' => 'sbo', 'Sc05g0009240' => 'sci', 'Sc12g0002300' => 'sci', 'Sc21g0000100' => 'sci', 'Sc21g0004720' => 'sci', 'Sed0002949' => 'sed', 'Sed0004114' => 'sed', 'Sed0004306' => 'sed', 'Sed0006172' => 'sed', 'Sed0008413' => 'sed', 'Sed0013809' => 'sed', 'Sed0019556' => 'sed', 'SEGI_03570' => 'sgi', 'SEGI_07859' => 'sgi', 'SEGI_15042' => 'sgi', 'SEGI_16263' => 'sgi', 'SEGI_16552' => 'sgi', 'SEGI_24331' => 'sgi', 'SEGI_27316' => 'sgi', 'SEGI_29521' => 'sgi', 'SEGI_41342' => 'sgi', 'SGA_v2.0_scaffold27G11617' => 'sas', 'SGA_v2.0_scaffold316G48428' => 'sas', 'SGA_v2.0_scaffold49G18261' => 'sas', 'SGA_v2.0_scaffold7G03831' => 'sas', 'SGA_v2.0_scaffold93G28359' => 'sas', 'SHI02210' => 'shi', 'SHI06028' => 'shi', 'SHI06321' => 'shi', 'SMO111G0012' => 'smo', 'SMO228G0080' => 'smo', 'SMO356G0756' => 'smo', 'Solyc02g080620.3' => 'sly', 'Solyc06g074530.1' => 'sly', 'Solyc11g066890.1' => 'sly', 'Solyc11g072520.3' => 'sly', 'Sopen02g025330' => 'spe', 'Sopen06g031000' => 'spe', 'Sopen09g008240' => 'spe', 'Sopen09g025210' => 'spe', 'Sopen11g026600' => 'spe', 'Sopen11g030170' => 'spe', 'Sp1g10420' => 'spa', 'Sp3g06570' => 'spa', 'Sp4g10660' => 'spa', 'Sp5g16460' => 'spa', 'Sp6g22710' => 'spa', 'TAR365G0112' => 'tar', 'TAR369G0717' => 'tar', 'TAR374G0976' => 'tar', 'TAR623G1128' => 'tar', 'TAR626G1937' => 'tar', 'TAR627G0123' => 'tar', 'TAR628G0305' => 'tar', 'TAR636G1176' => 'tar', 'TAR636G2442' => 'tar', 'THA.LOC104800556' => 'tha', 'THA.LOC104809501' => 'tha', 'THA.LOC104815126' => 'tha', 'THA.LOC104815732' => 'tha', 'THA.LOC104823528' => 'tha', 'Thecc.02G365600' => 'tca', 'Thecc.06G222300' => 'tca', 'Thecc.09G261800' => 'tca', 'Thecc.09G291400' => 'tca', 'Thhalv10003028m.g' => 'esa', 'Thhalv10007886m.g' => 'esa', 'Thhalv10016085m.g' => 'esa', 'Thhalv10016681m.g' => 'esa', 'Thhalv10020951m.g' => 'esa', 'TPR.G15598' => 'tpr', 'TPR.G29305' => 'tpr', 'TPR.G32395' => 'tpr', 'TPR.G36998' => 'tpr', 'TPR.G4227' => 'tpr', 'TWI18G1433' => 'twi', 'TWI31G0755' => 'twi', 'TWI38G0912' => 'twi', 'TWI75G1097' => 'twi', 'TWI75G1619' => 'twi', 'TWI79G1336' => 'twi', 'unitig_0.g943' => 'ugi', 'unitig_0.g944' => 'ugi', 'unitig_22.g6646' => 'ugi', 'unitig_37.g12681' => 'ugi', 'unitig_8.g3290' => 'ugi', 'vmacro03278' => 'vma', 'vmacro12197' => 'vma', 'vmacro14478' => 'vma', 'vmacro15787' => 'vma', 'vmacro15789' => 'vma', 'vmacro15790' => 'vma', 'vmacro15806' => 'vma', 'vmacro22907' => 'vma', 'vmacro22908' => 'vma', 'vmacro22909' => 'vma', 'vmacro23108' => 'vma', 'VMungo0540G0540' => 'vmu', 'VMungo0540G2468' => 'vmu', 'VMungo1080G0390' => 'vmu', 'VMungo1080G1165' => 'vmu', 'VMungo1127G0170' => 'vmu', 'VMungo1127G2099' => 'vmu', 'VMungo1215G3013' => 'vmu', 'Zm00001eb013110' => 'zma', 'Zm00001eb084260' => 'zma', 'Zm00001eb096110' => 'zma', 'Zm00001eb217510' => 'zma', 'Zm00001eb322550' => 'zma', 'Zm00001eb390770' => 'zma', 'Zm00001eb397170' => 'zma', 'Zm00001eb404610' => 'zma', 'Zm00001eb421790' => 'zma' ) $gf_id = 'HOM05D000911' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000911' ) $data_identifier = 'HOM05D000911' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 16, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 5, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 6, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 8, 'nnu' => (int) 16, 'oeu' => (int) 8, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 5, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 16, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421790' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000911', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27780' => 'bna', 'A03p35380' => 'bna', 'A04p21160' => 'bna', 'A05p40570' => 'bna', 'A06p26900' => 'bna', 'A08p33230' => 'bna', 'A09p65960' => 'bna', 'A10p18290' => 'bna', 'Aa31LG1G12990' => 'aar', 'Aa31LG1G2980' => 'aar', 'Aa31LG4G14320' => 'aar', 'Aa31LG7G11800' => 'aar', 'Aa31sc36G50' => 'aar', 'Aa31sc36G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3721' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5459' => 'aag', 'Actinidia03028' => 'ach', 'Actinidia03753' => 'ach', 'Actinidia04187' => 'ach', 'Actinidia05509' => 'ach', 'Actinidia24180' => 'ach', 'Actinidia26906' => 'ach', 'Actinidia37097' => 'ach', 'Actinidia38249' => 'ach', 'Ah.01g003470' => 'amhyb', 'Ah.01g004580' => 'amhyb', 'Ah.01g014850' => 'amhyb', 'Ah.01g016830' => 'amhyb', 'Ah.14g088000' => 'amhyb', 'AL1G22980' => 'aly', 'AL3G18990' => 'aly', 'AL4G22440' => 'aly', 'AL4G33180' => 'aly', 'AL5G22920' => 'aly', 'AL6G33660' => 'aly', 'AL8G20720' => 'aly', 'Aqoxy1G00935' => 'aox', 'Aqoxy1G02094' => 'aox', 'Aqoxy2G01239' => 'aox', 'Aqoxy4G01870' => 'aox', 'Aqoxy7G00450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.36ZVTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71EM27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5D6C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH3WRE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3NCM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RIM768' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YB5YRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z36GDV' => 'arhy', 'AT1G08250' => 'ath', 'AT1G11790' => 'ath', 'AT2G27820' => 'ath', 'AT3G07630' => 'ath', 'AT3G44720' => 'ath', 'AT5G22630' => 'ath', 'ATR0693G304' => 'atr', 'ATR0794G109' => 'atr', 'ATR0820G120' => 'atr', 'ATR1159G064' => 'atr', 'Atru.chr10.2239' => 'acertr', 'Atru.chr3.3371' => 'acertr', 'Atru.chr6.3202' => 'acertr', 'AUR62006499' => 'cqu', 'AUR62012718' => 'cqu', 'AUR62021938' => 'cqu', 'AUR62023932' => 'cqu', 'AUR62025034' => 'cqu', 'AUR62025035' => 'cqu', 'AUR62038307' => 'cqu', 'AUR62043466' => 'cqu', 'BcaB02g10748' => 'bca', 'BcaB03g13231' => 'bca', 'BcaB03g14689' => 'bca', 'BcaB05g22716' => 'bca', 'BcaB06g28172' => 'bca', 'BcaB08g36413' => 'bca', 'BcaC01g02186' => 'bca', 'BcaC01g04272' => 'bca', 'BcaC02g08080' => 'bca', 'BcaC02g08227' => 'bca', 'BcaC03g13901' => 'bca', 'BcaC04g19593' => 'bca', 'BcaC04g20874' => 'bca', 'BcaC05g29557' => 'bca', 'BcaC06g35505' => 'bca', 'BcaC07g41954' => 'bca', 'BcaC07g41955' => 'bca', 'BcaC07g41956' => 'bca', 'BcaC07g42519' => 'bca', 'BcaC07g42520' => 'bca', 'BcaC07g42523' => 'bca', 'BcaC07g42524' => 'bca', 'BcaC07g42525' => 'bca', 'BcaC08g47480' => 'bca', 'BcaC08g47481' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00530' => 'bna', 'BolC2t07178H' => 'bol', 'BolC3t16567H' => 'bol', 'BolC4t27234H' => 'bol', 'BolC5t29728H' => 'bol', 'BolC5t34622H' => 'bol', 'BolC6t40321H' => 'bol', 'BolC7t42028H' => 'bol', 'BolC8t49125H' => 'bol', 'BolC8t52538H' => 'bol', 'BolC8t52539H' => 'bol', 'BolC9t56681H' => 'bol', 'BolC9t58266H' => 'bol', 'BolSC21t60294H' => 'bol', 'BraA02t05670Z' => 'bra', 'BraA03t12716Z' => 'bra', 'BraA04t17685Z' => 'bra', 'BraA05t22788Z' => 'bra', 'BraA06t24032Z' => 'bra', 'BraA06t25625Z' => 'bra', 'BraA07t27930Z' => 'bra', 'BraA08t35242Z' => 'bra', 'BraA09t38609Z' => 'bra', 'BraA10t43905Z' => 'bra', 'C02p11060' => 'bna', 'C03p42990' => 'bna', 'C03p67310' => 'bna', 'C04p56990' => 'bna', 'C04p58660' => 'bna', 'C05p09890' => 'bna', 'C05p59680' => 'bna', 'C06p19830' => 'bna', 'C06p53040' => 'bna', 'C07p15230' => 'bna', 'C08p50070' => 'bna', 'C08p50090' => 'bna', 'C09p38330' => 'bna', 'C09p53940' => 'bna', 'CAN.G1014.1' => 'can', 'CAN.G644.30' => 'can', 'CAN.G84.47' => 'can', 'CAN.G919.8' => 'can', 'CANSAT54G0113' => 'cansat', 'CANSAT54G1286' => 'cansat', 'CANSAT64G1020' => 'cansat', 'CARHR008080' => 'chi', 'CARHR008090' => 'chi', 'CARHR012130' => 'chi', 'CARHR038390' => 'chi', 'CARHR082330' => 'chi', 'CARHR120520' => 'chi', 'CARHR151470' => 'chi', 'CARHR190950' => 'chi', 'Carub.0001s0760' => 'cru', 'Carub.0001s1146' => 'cru', 'Carub.0003s0721' => 'cru', 'Carub.0004s0858' => 'cru', 'Carub.0005s1040' => 'cru', 'Carub.0006s2035' => 'cru', 'Carub.0015s0005' => 'cru', 'Ca_01607_v3' => 'car', 'Ca_01677_v3' => 'car', 'Ca_06087_v3' => 'car', 'Ca_19238_v3' => 'car', 'Ca_19373_v3' => 'car', 'Ca_21079_v3' => 'car', 'CBR_g54016' => 'cbr', 'CBR_g54018' => 'cbr', 'CBR_g54020' => 'cbr', 'Cc01_g09780' => 'ccan', 'Cc01_g11680' => 'ccan', 'Cc02_g15610' => 'ccan', 'Cc05_g04350' => 'ccan', 'Cc09_g01580' => 'ccan', 'CDE01G0795' => 'cde', 'CDE02G2024' => 'cde', 'CDE02G2260' => 'cde', 'CDE02G4561' => 'cde', 'CDE05G2733' => 'cde', 'CDE05G3422' => 'cde', 'CDE06G2003' => 'cde', 'CDE08G0576' => 'cde', 'CDE09G0048' => 'cde', 'CDE11G0805' => 'cde', 'Cfa003644' => 'cfa', 'Cfa006290' => 'cfa', 'Cfa010080' => 'cfa', 'Cfa011376' => 'cfa', 'Cfa011576' => 'cfa', 'Cfa011577' => 'cfa', 'Cfa014389' => 'cfa', 'Ciclev10006044m.g' => 'ccl', 'Ciclev10006954m.g' => 'ccl', 'Ciclev10015131m.g' => 'ccl', 'Ciclev10015580m.g' => 'ccl', 'Ciclev10028359m.g' => 'ccl', 'Ciclev10028573m.g' => 'ccl', 'CiPaw.03G159300' => 'cil', 'CiPaw.04G115100' => 'cil', 'CiPaw.09G092800' => 'cil', 'CiPaw.10G071800' => 'cil', 'CiPaw.13G105800' => 'cil', 'CiPaw.13G141000' => 'cil', 'CiPaw.14G103400' => 'cil', 'ClCG01G012700' => 'cla', 'ClCG01G012720' => 'cla', 'ClCG01G021920' => 'cla', 'ClCG02G008870' => 'cla', 'ClCG02G020840' => 'cla', 'ClCG02G021930' => 'cla', 'COL.COLO4_19302' => 'col', 'COL.COLO4_25262' => 'col', 'COL.COLO4_31788' => 'col', 'Cpa.g.c34684' => 'cpa', 'Cpa.g.c36520.1' => 'cpa', 'Cpa.g.c45626' => 'cpa', 'Cpa.g.sc121.17' => 'cpa', 'Cpa.g.sc13.22' => 'cpa', 'Cpa.g.sc87.88' => 'cpa', 'Cre06.g261800' => 'cre', 'CsaV3_1G014500' => 'csa', 'CsaV3_1G014510' => 'csa', 'CsaV3_2G034880' => 'csa', 'CsaV3_6G014760' => 'csa', 'CsaV3_6G021500' => 'csa', 'CsaV3_6G048980' => 'csa', 'CSS0002511' => 'camsi', 'CSS0007556' => 'camsi', 'CSS0008532' => 'camsi', 'CSS0009709' => 'camsi', 'CSS0010486' => 'camsi', 'CSS0016768' => 'camsi', 'CSS0023512' => 'camsi', 'CSS0025341' => 'camsi', 'CSS0027999' => 'camsi', 'CSS0028944' => 'camsi', 'CSS0032292' => 'camsi', 'CSS0032464' => 'camsi', 'CSS0037153' => 'camsi', 'CSS0039256' => 'camsi', 'CSS0048392' => 'camsi', 'CSS0050458' => 'camsi', 'DCAR_004224' => 'dca', 'DCAR_006147' => 'dca', 'DCAR_006465' => 'dca', 'DCAR_008159' => 'dca', 'DCAR_012164' => 'dca', 'DCAR_019764' => 'dca', 'Dinv05418' => 'din', 'Dinv10839' => 'din', 'Dinv12521' => 'din', 'Dinv13900' => 'din', 'Dinv29426' => 'din', 'Duzib150G0263' => 'dzi', 'Duzib168G1178' => 'dzi', 'Duzib168G1924' => 'dzi', 'Duzib170G0299' => 'dzi', 'Duzib170G0813' => 'dzi', 'Duzib235G1128' => 'dzi', 'Duzib248G1060' => 'dzi', 'ECA232G1910' => 'eca', 'ECA233G4621' => 'eca', 'ECA238G1216' => 'eca', 'ECA238G1784' => 'eca', 'ECA248G1242' => 'eca', 'EL10Ac8g20071' => 'bvu', 'EL10Ac9g21086' => 'bvu', 'EL10Ac9g22407' => 'bvu', 'EL10Ac9g22412' => 'bvu', 'Eucgr.A01119' => 'egr', 'Eucgr.E04043' => 'egr', 'Eucgr.J00428' => 'egr', 'Eucgr.J00958' => 'egr', 'FAN11G3091' => 'fan', 'FAN11G3651' => 'fan', 'FAN16G2566' => 'fan', 'FAN21G3155' => 'fan', 'FAN21G3400' => 'fan', 'FAN21G3543' => 'fan', 'FAN25G0234' => 'fan', 'FAN25G1422' => 'fan', 'FAN25G3392' => 'fan', 'FvH4_3g01940' => 'fve', 'FvH4_3g29870' => 'fve', 'FvH4_3g33680' => 'fve', 'Glyma.09G004200' => 'gma', 'Glyma.11G151288' => 'gma', 'Glyma.11G189100' => 'gma', 'Glyma.12G072500' => 'gma', 'Glyma.12G085500' => 'gma', 'Glyma.12G181800' => 'gma', 'Glyma.12G193000' => 'gma', 'Glyma.13G309300' => 'gma', 'Glyma.13G319000' => 'gma', 'Glyma.17G012600' => 'gma', 'Gohir.A06G148600' => 'ghi', 'Gohir.A07G115800' => 'ghi', 'Gohir.A08G003600' => 'ghi', 'Gohir.A09G093300' => 'ghi', 'Gohir.A09G105400' => 'ghi', 'Gohir.A09G105500' => 'ghi', 'Gohir.D06G154600' => 'ghi', 'Gohir.D07G120200' => 'ghi', 'Gohir.D08G013900' => 'ghi', 'Gohir.D09G093100' => 'ghi', 'Gohir.D09G102200' => 'ghi', 'Gohir.D09G102300' => 'ghi', 'Gorai.001G129400' => 'gra', 'Gorai.004G008200' => 'gra', 'Gorai.006G109800' => 'gra', 'Gorai.006G119500' => 'gra', 'Gorai.006G121300' => 'gra', 'Gorai.010G180700' => 'gra', 'GSVIVG01012716001' => 'vvi', 'GSVIVG01025118001' => 'vvi', 'GSVIVG01030439001' => 'vvi', 'GSVIVG01031397001' => 'vvi', 'HanXRQChr01g0004201' => 'han', 'HanXRQChr02g0054941' => 'han', 'HanXRQChr05g0141811' => 'han', 'HanXRQChr07g0197751' => 'han', 'HanXRQChr11g0346691' => 'han', 'HanXRQChr13g0396971' => 'han', 'HanXRQChr14g0432951' => 'han', 'HanXRQChr14g0452001' => 'han', 'HanXRQChr15g0496681' => 'han', 'HanXRQChr17g0557491' => 'han', 'HanXRQChr17g0557501' => 'han', 'Haze_06809' => 'cav', 'Haze_12852' => 'cav', 'Haze_15850' => 'cav', 'Haze_23446' => 'cav', 'Haze_23942' => 'cav', 'Haze_23943' => 'cav', 'Hma1.2p1_0091F.1_g046450' => 'hma', 'Hma1.2p1_0128F.1_g059910' => 'hma', 'Hma1.2p1_0249F.1_g102260' => 'hma', 'Hma1.2p1_0453F.1_g156190' => 'hma', 'Hma1.2p1_0695F.1_g204380' => 'hma', 'Hma1.2p1_0749F.1_g212650' => 'hma', 'Hma1.2p1_2156F.1_g315420' => 'hma', 'Hma1.2p1_2686F.1_g326940' => 'hma', 'HPP92_006428' => 'vpl', 'HPP92_012069' => 'vpl', 'HPP92_014129' => 'vpl', 'HPP92_014133' => 'vpl', 'HPP92_017315' => 'vpl', 'HPP92_026445' => 'vpl', 'HPP92_026446' => 'vpl', 'Hund00774' => 'sun', 'Hund07682' => 'sun', 'Hund21413' => 'sun', 'Hund23462' => 'sun', 'Hund23463' => 'sun', 'Lalb_Chr03g0027911' => 'lal', 'Lalb_Chr13g0304271' => 'lal', 'Lalb_Chr19g0137471' => 'lal', 'Lalb_Chr22g0350651' => 'lal', 'Lalb_Chr24g0395151' => 'lal', 'Lj1A1231T40' => 'lonja', 'Lj1A221T48' => 'lonja', 'Lj1C924T12' => 'lonja', 'Lj2C993G6' => 'lonja', 'Lj3g0005790' => 'lja', 'Lj3g0015432' => 'lja', 'Lj3g0017722' => 'lja', 'Lj3g0018497' => 'lja', 'Lj4g0025071' => 'lja', 'Lsat_1_v5_gn_1_129680' => 'lsa', 'Lsat_1_v5_gn_2_25321' => 'lsa', 'Lsat_1_v5_gn_2_95461' => 'lsa', 'Lsat_1_v5_gn_4_159620' => 'lsa', 'Lsat_1_v5_gn_6_41301' => 'lsa', 'Lsat_1_v5_gn_6_74660' => 'lsa', 'Lsat_1_v5_gn_7_11520' => 'lsa', 'Lsat_1_v5_gn_9_67680' => 'lsa', 'Manes.04G008300' => 'mes', 'Manes.04G008400' => 'mes', 'Manes.04G026500' => 'mes', 'Manes.10G135300' => 'mes', 'Manes.11G157300' => 'mes', 'Manes.12G074000' => 'mes', 'Manes.16G006200' => 'mes', 'Manes.17G026400' => 'mes', 'Mapoly0024s0086' => 'mpo', 'Mapoly0024s0087' => 'mpo', 'Mapoly0071s0057' => 'mpo', 'Mapoly0204s0012' => 'mpo', 'MBI04_g37681_MAGBIO' => 'mbi', 'MBI05_g17779_MAGBIO' => 'mbi', 'MBI12_g31184_MAGBIO' => 'mbi', 'MBI17_g11083_MAGBIO' => 'mbi', 'MBI18_g03883_MAGBIO' => 'mbi', 'MBI18_g28940_MAGBIO' => 'mbi', 'MCO01G690' => 'mco', 'MD03G1109900' => 'mdo', 'MD03G1134800' => 'mdo', 'MD05G1348000' => 'mdo', 'MD10G1322400' => 'mdo', 'MD11G1123300' => 'mdo', 'MD11G1157600' => 'mdo', 'Medtr2g084875' => 'mtr', 'Medtr2g088130' => 'mtr', 'Medtr4g055310' => 'mtr', 'Medtr4g061070' => 'mtr', 'Medtr4g132250' => 'mtr', 'MELO3C004795.2' => 'cme', 'MELO3C004797.2' => 'cme', 'MELO3C007396.2' => 'cme', 'MELO3C019277.2' => 'cme', 'MELO3C021449.2' => 'cme', 'MELO3C025736.2' => 'cme', 'Migut.D02175' => 'egut', 'Migut.H01573' => 'egut', 'Migut.M01327' => 'egut', 'Migut.N02513' => 'egut', 'MSTRG.14638' => 'ama', 'MSTRG.18632' => 'ama', 'MSTRG.7203' => 'ama', 'Nitab4.5_0000533g0140' => 'nta', 'Nitab4.5_0000888g0150' => 'nta', 'Nitab4.5_0001453g0040' => 'nta', 'Nitab4.5_0002827g0090' => 'nta', 'Nitab4.5_0003082g0040' => 'nta', 'Nitab4.5_0007799g0040' => 'nta', 'Nitab4.5_0008983g0010' => 'nta', 'Nitab4.5_0009017g0020' => 'nta', 'Nn1g02132' => 'nnu', 'Nn1g03492' => 'nnu', 'Nn1g03493' => 'nnu', 'Nn1g03494' => 'nnu', 'Nn1g07164' => 'nnu', 'Nn1g07291' => 'nnu', 'Nn2g10655' => 'nnu', 'Nn2g11652' => 'nnu', 'Nn2g14008' => 'nnu', 'Nn3g17476' => 'nnu', 'Nn3g17477' => 'nnu', 'Nn4g22370' => 'nnu', 'Nn4g25255' => 'nnu', 'Nn5g27755' => 'nnu', 'Nn6g34260' => 'nnu', 'Nn6g35041' => 'nnu', 'Oeu005924.1' => 'oeu', 'Oeu008383.1' => 'oeu', 'Oeu014928.1' => 'oeu', 'Oeu019889.1' => 'oeu', 'Oeu022271.1' => 'oeu', 'Oeu025271.1' => 'oeu', 'Oeu036302.1' => 'oeu', 'Oeu044100.1' => 'oeu', 'Os01g0528300' => 'osa', 'Os03g0286200' => 'osa', 'Os04g0406600' => 'osa', 'Os07g0512000' => 'osa', 'Os07g0694600' => 'osa', 'Os08g0411000' => 'osa', 'Os09g0565700' => 'osa', 'Os09g0566050' => 'osa', 'Os10g0523700' => 'osa', 'Peaxi162Scf00002g00514' => 'pax', 'Peaxi162Scf00047g01817' => 'pax', 'Peaxi162Scf00114g00001' => 'pax', 'Peaxi162Scf00147g00613' => 'pax', 'Peaxi162Scf00389g00425' => 'pax', 'PGR042G1139' => 'pgr', 'PGR042G3273' => 'pgr', 'PGR102G2180' => 'pgr', 'PGR119G0234' => 'pgr', 'PGR119G0668' => 'pgr', 'PGSC0003DMG400007122' => 'stu', 'PGSC0003DMG400016478' => 'stu', 'PGSC0003DMG400025374' => 'stu', 'PGSC0003DMG400026536' => 'stu', 'Phvul.003G079600' => 'pvu', 'Phvul.005G115600' => 'pvu', 'Phvul.005G127100' => 'pvu', 'Phvul.006G149500' => 'pvu', 'Phvul.006G149600' => 'pvu', 'Phvul.011G071800' => 'pvu', 'Phvul.011G090400' => 'pvu', 'Potri.004G013400' => 'ptr', 'Potri.004G188100' => 'ptr', 'Potri.008G195500' => 'ptr', 'Potri.009G148800' => 'ptr', 'Potri.011G004700' => 'ptr', 'Pp3c17_22810' => 'ppa', 'Pp3c18_4480' => 'ppa', 'Pp3c19_13030' => 'ppa', 'Pp3c1_33620' => 'ppa', 'Pp3c2_9380' => 'ppa', 'PRCOL_00001023' => 'pco', 'Prupe.3G216300' => 'ppe', 'Prupe.4G019500' => 'ppe', 'Prupe.6G092500' => 'ppe', 'Prupe.6G119200' => 'ppe', 'Psat0s1945g0080' => 'psa', 'Psat0s4167g0040' => 'psa', 'Psat1g185800' => 'psa', 'Psat4g006440' => 'psa', 'Psat4g006480' => 'psa', 'Psat4g168120' => 'psa', 'Psat5g255680' => 'psa', 'Psat5g261760' => 'psa', 'Psat7g222120' => 'psa', 'PSO063G7252' => 'pso', 'PSO170G4778' => 'pso', 'PSO210G2249' => 'pso', 'PSO339G2411' => 'pso', 'PSO339G2457' => 'pso', 'PSO339G2854' => 'pso', 'PSO339G4288' => 'pso', 'PSO339G4615' => 'pso', 'PSO384G2796' => 'pso', 'PSO384G2940' => 'pso', 'PSO384G4227' => 'pso', 'PSO478G1425' => 'pso', 'PSO541G3863' => 'pso', 'PSO675G0507' => 'pso', 'PSO782G0338' => 'pso', 'PSO832G0644' => 'pso', 'QL01p013664' => 'qlo', 'QL01p036598' => 'qlo', 'QL05p072984' => 'qlo', 'QL08p005768' => 'qlo', 'QL08p032743' => 'qlo', 'QL93p0073_0439' => 'qlo', 'QL93p0073_0444' => 'qlo', 'RcHm_v2.0_Chr5g0002851' => 'rch', 'RcHm_v2.0_Chr5g0055201' => 'rch', 'RcHm_v2.0_Chr5g0061191' => 'rch', 'RcHm_v2.0_Chr7g0203231' => 'rch', 'Rhsim01G0208100' => 'rsi', 'Rhsim01G0208200' => 'rsi', 'Rhsim02G0106500' => 'rsi', 'Rhsim03G0107900' => 'rsi', 'Rhsim06G0163400' => 'rsi', 'Rhsim13G0105200' => 'rsi', 'Sabra04G0006300' => 'sbr', 'Sabra04G0127000' => 'sbr', 'Sabra08G0148700' => 'sbr', 'Sabra09G0117400' => 'sbr', 'SalBow1G3326' => 'sbo', 'SalBow3G3228' => 'sbo', 'SalBow6G1634' => 'sbo', 'SalBow6G3603' => 'sbo', 'SalBow6G5266' => 'sbo', 'SalBow7G2265' => 'sbo', 'SalBow8G0850' => 'sbo', 'SalBow8G2592' => 'sbo', 'Sc05g0009240' => 'sci', 'Sc12g0002300' => 'sci', 'Sc21g0000100' => 'sci', 'Sc21g0004720' => 'sci', 'Sed0002949' => 'sed', 'Sed0004114' => 'sed', 'Sed0004306' => 'sed', 'Sed0006172' => 'sed', 'Sed0008413' => 'sed', 'Sed0013809' => 'sed', 'Sed0019556' => 'sed', 'SEGI_03570' => 'sgi', 'SEGI_07859' => 'sgi', 'SEGI_15042' => 'sgi', 'SEGI_16263' => 'sgi', 'SEGI_16552' => 'sgi', 'SEGI_24331' => 'sgi', 'SEGI_27316' => 'sgi', 'SEGI_29521' => 'sgi', 'SEGI_41342' => 'sgi', 'SGA_v2.0_scaffold27G11617' => 'sas', 'SGA_v2.0_scaffold316G48428' => 'sas', 'SGA_v2.0_scaffold49G18261' => 'sas', 'SGA_v2.0_scaffold7G03831' => 'sas', 'SGA_v2.0_scaffold93G28359' => 'sas', 'SHI02210' => 'shi', 'SHI06028' => 'shi', 'SHI06321' => 'shi', 'SMO111G0012' => 'smo', 'SMO228G0080' => 'smo', 'SMO356G0756' => 'smo', 'Solyc02g080620.3' => 'sly', 'Solyc06g074530.1' => 'sly', 'Solyc11g066890.1' => 'sly', 'Solyc11g072520.3' => 'sly', 'Sopen02g025330' => 'spe', 'Sopen06g031000' => 'spe', 'Sopen09g008240' => 'spe', 'Sopen09g025210' => 'spe', 'Sopen11g026600' => 'spe', 'Sopen11g030170' => 'spe', 'Sp1g10420' => 'spa', 'Sp3g06570' => 'spa', 'Sp4g10660' => 'spa', 'Sp5g16460' => 'spa', 'Sp6g22710' => 'spa', 'TAR365G0112' => 'tar', 'TAR369G0717' => 'tar', 'TAR374G0976' => 'tar', 'TAR623G1128' => 'tar', 'TAR626G1937' => 'tar', 'TAR627G0123' => 'tar', 'TAR628G0305' => 'tar', 'TAR636G1176' => 'tar', 'TAR636G2442' => 'tar', 'THA.LOC104800556' => 'tha', 'THA.LOC104809501' => 'tha', 'THA.LOC104815126' => 'tha', 'THA.LOC104815732' => 'tha', 'THA.LOC104823528' => 'tha', 'Thecc.02G365600' => 'tca', 'Thecc.06G222300' => 'tca', 'Thecc.09G261800' => 'tca', 'Thecc.09G291400' => 'tca', 'Thhalv10003028m.g' => 'esa', 'Thhalv10007886m.g' => 'esa', 'Thhalv10016085m.g' => 'esa', 'Thhalv10016681m.g' => 'esa', 'Thhalv10020951m.g' => 'esa', 'TPR.G15598' => 'tpr', 'TPR.G29305' => 'tpr', 'TPR.G32395' => 'tpr', 'TPR.G36998' => 'tpr', 'TPR.G4227' => 'tpr', 'TWI18G1433' => 'twi', 'TWI31G0755' => 'twi', 'TWI38G0912' => 'twi', 'TWI75G1097' => 'twi', 'TWI75G1619' => 'twi', 'TWI79G1336' => 'twi', 'unitig_0.g943' => 'ugi', 'unitig_0.g944' => 'ugi', 'unitig_22.g6646' => 'ugi', 'unitig_37.g12681' => 'ugi', 'unitig_8.g3290' => 'ugi', 'vmacro03278' => 'vma', 'vmacro12197' => 'vma', 'vmacro14478' => 'vma', 'vmacro15787' => 'vma', 'vmacro15789' => 'vma', 'vmacro15790' => 'vma', 'vmacro15806' => 'vma', 'vmacro22907' => 'vma', 'vmacro22908' => 'vma', 'vmacro22909' => 'vma', 'vmacro23108' => 'vma', 'VMungo0540G0540' => 'vmu', 'VMungo0540G2468' => 'vmu', 'VMungo1080G0390' => 'vmu', 'VMungo1080G1165' => 'vmu', 'VMungo1127G0170' => 'vmu', 'VMungo1127G2099' => 'vmu', 'VMungo1215G3013' => 'vmu', 'Zm00001eb013110' => 'zma', 'Zm00001eb084260' => 'zma', 'Zm00001eb096110' => 'zma', 'Zm00001eb217510' => 'zma', 'Zm00001eb322550' => 'zma', 'Zm00001eb390770' => 'zma', 'Zm00001eb397170' => 'zma', 'Zm00001eb404610' => 'zma', 'Zm00001eb421790' => 'zma' ), 'gf_id' => 'HOM05D000911', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000911' ), 'data_identifier' => 'HOM05D000911', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000911', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27780' => 'bna', 'A03p35380' => 'bna', 'A04p21160' => 'bna', 'A05p40570' => 'bna', 'A06p26900' => 'bna', 'A08p33230' => 'bna', 'A09p65960' => 'bna', 'A10p18290' => 'bna', 'Aa31LG1G12990' => 'aar', 'Aa31LG1G2980' => 'aar', 'Aa31LG4G14320' => 'aar', 'Aa31LG7G11800' => 'aar', 'Aa31sc36G50' => 'aar', 'Aa31sc36G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3721' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5459' => 'aag', 'Actinidia03028' => 'ach', 'Actinidia03753' => 'ach', 'Actinidia04187' => 'ach', 'Actinidia05509' => 'ach', 'Actinidia24180' => 'ach', 'Actinidia26906' => 'ach', 'Actinidia37097' => 'ach', 'Actinidia38249' => 'ach', 'Ah.01g003470' => 'amhyb', 'Ah.01g004580' => 'amhyb', 'Ah.01g014850' => 'amhyb', 'Ah.01g016830' => 'amhyb', 'Ah.14g088000' => 'amhyb', 'AL1G22980' => 'aly', 'AL3G18990' => 'aly', 'AL4G22440' => 'aly', 'AL4G33180' => 'aly', 'AL5G22920' => 'aly', 'AL6G33660' => 'aly', 'AL8G20720' => 'aly', 'Aqoxy1G00935' => 'aox', 'Aqoxy1G02094' => 'aox', 'Aqoxy2G01239' => 'aox', 'Aqoxy4G01870' => 'aox', 'Aqoxy7G00450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.36ZVTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71EM27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5D6C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH3WRE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3NCM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RIM768' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YB5YRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z36GDV' => 'arhy', 'AT1G08250' => 'ath', 'AT1G11790' => 'ath', 'AT2G27820' => 'ath', 'AT3G07630' => 'ath', 'AT3G44720' => 'ath', 'AT5G22630' => 'ath', 'ATR0693G304' => 'atr', 'ATR0794G109' => 'atr', 'ATR0820G120' => 'atr', 'ATR1159G064' => 'atr', 'Atru.chr10.2239' => 'acertr', 'Atru.chr3.3371' => 'acertr', 'Atru.chr6.3202' => 'acertr', 'AUR62006499' => 'cqu', 'AUR62012718' => 'cqu', 'AUR62021938' => 'cqu', 'AUR62023932' => 'cqu', 'AUR62025034' => 'cqu', 'AUR62025035' => 'cqu', 'AUR62038307' => 'cqu', 'AUR62043466' => 'cqu', 'BcaB02g10748' => 'bca', 'BcaB03g13231' => 'bca', 'BcaB03g14689' => 'bca', 'BcaB05g22716' => 'bca', 'BcaB06g28172' => 'bca', 'BcaB08g36413' => 'bca', 'BcaC01g02186' => 'bca', 'BcaC01g04272' => 'bca', 'BcaC02g08080' => 'bca', 'BcaC02g08227' => 'bca', 'BcaC03g13901' => 'bca', 'BcaC04g19593' => 'bca', 'BcaC04g20874' => 'bca', 'BcaC05g29557' => 'bca', 'BcaC06g35505' => 'bca', 'BcaC07g41954' => 'bca', 'BcaC07g41955' => 'bca', 'BcaC07g41956' => 'bca', 'BcaC07g42519' => 'bca', 'BcaC07g42520' => 'bca', 'BcaC07g42523' => 'bca', 'BcaC07g42524' => 'bca', 'BcaC07g42525' => 'bca', 'BcaC08g47480' => 'bca', 'BcaC08g47481' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00530' => 'bna', 'BolC2t07178H' => 'bol', 'BolC3t16567H' => 'bol', 'BolC4t27234H' => 'bol', 'BolC5t29728H' => 'bol', 'BolC5t34622H' => 'bol', 'BolC6t40321H' => 'bol', 'BolC7t42028H' => 'bol', 'BolC8t49125H' => 'bol', 'BolC8t52538H' => 'bol', 'BolC8t52539H' => 'bol', 'BolC9t56681H' => 'bol', 'BolC9t58266H' => 'bol', 'BolSC21t60294H' => 'bol', 'BraA02t05670Z' => 'bra', 'BraA03t12716Z' => 'bra', 'BraA04t17685Z' => 'bra', 'BraA05t22788Z' => 'bra', 'BraA06t24032Z' => 'bra', 'BraA06t25625Z' => 'bra', 'BraA07t27930Z' => 'bra', 'BraA08t35242Z' => 'bra', 'BraA09t38609Z' => 'bra', 'BraA10t43905Z' => 'bra', 'C02p11060' => 'bna', 'C03p42990' => 'bna', 'C03p67310' => 'bna', 'C04p56990' => 'bna', 'C04p58660' => 'bna', 'C05p09890' => 'bna', 'C05p59680' => 'bna', 'C06p19830' => 'bna', 'C06p53040' => 'bna', 'C07p15230' => 'bna', 'C08p50070' => 'bna', 'C08p50090' => 'bna', 'C09p38330' => 'bna', 'C09p53940' => 'bna', 'CAN.G1014.1' => 'can', 'CAN.G644.30' => 'can', 'CAN.G84.47' => 'can', 'CAN.G919.8' => 'can', 'CANSAT54G0113' => 'cansat', 'CANSAT54G1286' => 'cansat', 'CANSAT64G1020' => 'cansat', 'CARHR008080' => 'chi', 'CARHR008090' => 'chi', 'CARHR012130' => 'chi', 'CARHR038390' => 'chi', 'CARHR082330' => 'chi', 'CARHR120520' => 'chi', 'CARHR151470' => 'chi', 'CARHR190950' => 'chi', 'Carub.0001s0760' => 'cru', 'Carub.0001s1146' => 'cru', 'Carub.0003s0721' => 'cru', 'Carub.0004s0858' => 'cru', 'Carub.0005s1040' => 'cru', 'Carub.0006s2035' => 'cru', 'Carub.0015s0005' => 'cru', 'Ca_01607_v3' => 'car', 'Ca_01677_v3' => 'car', 'Ca_06087_v3' => 'car', 'Ca_19238_v3' => 'car', 'Ca_19373_v3' => 'car', 'Ca_21079_v3' => 'car', 'CBR_g54016' => 'cbr', 'CBR_g54018' => 'cbr', 'CBR_g54020' => 'cbr', 'Cc01_g09780' => 'ccan', 'Cc01_g11680' => 'ccan', 'Cc02_g15610' => 'ccan', 'Cc05_g04350' => 'ccan', 'Cc09_g01580' => 'ccan', 'CDE01G0795' => 'cde', 'CDE02G2024' => 'cde', 'CDE02G2260' => 'cde', 'CDE02G4561' => 'cde', 'CDE05G2733' => 'cde', 'CDE05G3422' => 'cde', 'CDE06G2003' => 'cde', 'CDE08G0576' => 'cde', 'CDE09G0048' => 'cde', 'CDE11G0805' => 'cde', 'Cfa003644' => 'cfa', 'Cfa006290' => 'cfa', 'Cfa010080' => 'cfa', 'Cfa011376' => 'cfa', 'Cfa011576' => 'cfa', 'Cfa011577' => 'cfa', 'Cfa014389' => 'cfa', 'Ciclev10006044m.g' => 'ccl', 'Ciclev10006954m.g' => 'ccl', 'Ciclev10015131m.g' => 'ccl', 'Ciclev10015580m.g' => 'ccl', 'Ciclev10028359m.g' => 'ccl', 'Ciclev10028573m.g' => 'ccl', 'CiPaw.03G159300' => 'cil', 'CiPaw.04G115100' => 'cil', 'CiPaw.09G092800' => 'cil', 'CiPaw.10G071800' => 'cil', 'CiPaw.13G105800' => 'cil', 'CiPaw.13G141000' => 'cil', 'CiPaw.14G103400' => 'cil', 'ClCG01G012700' => 'cla', 'ClCG01G012720' => 'cla', 'ClCG01G021920' => 'cla', 'ClCG02G008870' => 'cla', 'ClCG02G020840' => 'cla', 'ClCG02G021930' => 'cla', 'COL.COLO4_19302' => 'col', 'COL.COLO4_25262' => 'col', 'COL.COLO4_31788' => 'col', 'Cpa.g.c34684' => 'cpa', 'Cpa.g.c36520.1' => 'cpa', 'Cpa.g.c45626' => 'cpa', 'Cpa.g.sc121.17' => 'cpa', 'Cpa.g.sc13.22' => 'cpa', 'Cpa.g.sc87.88' => 'cpa', 'Cre06.g261800' => 'cre', 'CsaV3_1G014500' => 'csa', 'CsaV3_1G014510' => 'csa', 'CsaV3_2G034880' => 'csa', 'CsaV3_6G014760' => 'csa', 'CsaV3_6G021500' => 'csa', 'CsaV3_6G048980' => 'csa', 'CSS0002511' => 'camsi', 'CSS0007556' => 'camsi', 'CSS0008532' => 'camsi', 'CSS0009709' => 'camsi', 'CSS0010486' => 'camsi', 'CSS0016768' => 'camsi', 'CSS0023512' => 'camsi', 'CSS0025341' => 'camsi', 'CSS0027999' => 'camsi', 'CSS0028944' => 'camsi', 'CSS0032292' => 'camsi', 'CSS0032464' => 'camsi', 'CSS0037153' => 'camsi', 'CSS0039256' => 'camsi', 'CSS0048392' => 'camsi', 'CSS0050458' => 'camsi', 'DCAR_004224' => 'dca', 'DCAR_006147' => 'dca', 'DCAR_006465' => 'dca', 'DCAR_008159' => 'dca', 'DCAR_012164' => 'dca', 'DCAR_019764' => 'dca', 'Dinv05418' => 'din', 'Dinv10839' => 'din', 'Dinv12521' => 'din', 'Dinv13900' => 'din', 'Dinv29426' => 'din', 'Duzib150G0263' => 'dzi', 'Duzib168G1178' => 'dzi', 'Duzib168G1924' => 'dzi', 'Duzib170G0299' => 'dzi', 'Duzib170G0813' => 'dzi', 'Duzib235G1128' => 'dzi', 'Duzib248G1060' => 'dzi', 'ECA232G1910' => 'eca', 'ECA233G4621' => 'eca', 'ECA238G1216' => 'eca', 'ECA238G1784' => 'eca', 'ECA248G1242' => 'eca', 'EL10Ac8g20071' => 'bvu', 'EL10Ac9g21086' => 'bvu', 'EL10Ac9g22407' => 'bvu', 'EL10Ac9g22412' => 'bvu', 'Eucgr.A01119' => 'egr', 'Eucgr.E04043' => 'egr', 'Eucgr.J00428' => 'egr', 'Eucgr.J00958' => 'egr', 'FAN11G3091' => 'fan', 'FAN11G3651' => 'fan', 'FAN16G2566' => 'fan', 'FAN21G3155' => 'fan', 'FAN21G3400' => 'fan', 'FAN21G3543' => 'fan', 'FAN25G0234' => 'fan', 'FAN25G1422' => 'fan', 'FAN25G3392' => 'fan', 'FvH4_3g01940' => 'fve', 'FvH4_3g29870' => 'fve', 'FvH4_3g33680' => 'fve', 'Glyma.09G004200' => 'gma', 'Glyma.11G151288' => 'gma', 'Glyma.11G189100' => 'gma', 'Glyma.12G072500' => 'gma', 'Glyma.12G085500' => 'gma', 'Glyma.12G181800' => 'gma', 'Glyma.12G193000' => 'gma', 'Glyma.13G309300' => 'gma', 'Glyma.13G319000' => 'gma', 'Glyma.17G012600' => 'gma', 'Gohir.A06G148600' => 'ghi', 'Gohir.A07G115800' => 'ghi', 'Gohir.A08G003600' => 'ghi', 'Gohir.A09G093300' => 'ghi', 'Gohir.A09G105400' => 'ghi', 'Gohir.A09G105500' => 'ghi', 'Gohir.D06G154600' => 'ghi', 'Gohir.D07G120200' => 'ghi', 'Gohir.D08G013900' => 'ghi', 'Gohir.D09G093100' => 'ghi', 'Gohir.D09G102200' => 'ghi', 'Gohir.D09G102300' => 'ghi', 'Gorai.001G129400' => 'gra', 'Gorai.004G008200' => 'gra', 'Gorai.006G109800' => 'gra', 'Gorai.006G119500' => 'gra', 'Gorai.006G121300' => 'gra', 'Gorai.010G180700' => 'gra', 'GSVIVG01012716001' => 'vvi', 'GSVIVG01025118001' => 'vvi', 'GSVIVG01030439001' => 'vvi', 'GSVIVG01031397001' => 'vvi', 'HanXRQChr01g0004201' => 'han', 'HanXRQChr02g0054941' => 'han', 'HanXRQChr05g0141811' => 'han', 'HanXRQChr07g0197751' => 'han', 'HanXRQChr11g0346691' => 'han', 'HanXRQChr13g0396971' => 'han', 'HanXRQChr14g0432951' => 'han', 'HanXRQChr14g0452001' => 'han', 'HanXRQChr15g0496681' => 'han', 'HanXRQChr17g0557491' => 'han', 'HanXRQChr17g0557501' => 'han', 'Haze_06809' => 'cav', 'Haze_12852' => 'cav', 'Haze_15850' => 'cav', 'Haze_23446' => 'cav', 'Haze_23942' => 'cav', 'Haze_23943' => 'cav', 'Hma1.2p1_0091F.1_g046450' => 'hma', 'Hma1.2p1_0128F.1_g059910' => 'hma', 'Hma1.2p1_0249F.1_g102260' => 'hma', 'Hma1.2p1_0453F.1_g156190' => 'hma', 'Hma1.2p1_0695F.1_g204380' => 'hma', 'Hma1.2p1_0749F.1_g212650' => 'hma', 'Hma1.2p1_2156F.1_g315420' => 'hma', 'Hma1.2p1_2686F.1_g326940' => 'hma', 'HPP92_006428' => 'vpl', 'HPP92_012069' => 'vpl', 'HPP92_014129' => 'vpl', 'HPP92_014133' => 'vpl', 'HPP92_017315' => 'vpl', 'HPP92_026445' => 'vpl', 'HPP92_026446' => 'vpl', 'Hund00774' => 'sun', 'Hund07682' => 'sun', 'Hund21413' => 'sun', 'Hund23462' => 'sun', 'Hund23463' => 'sun', 'Lalb_Chr03g0027911' => 'lal', 'Lalb_Chr13g0304271' => 'lal', 'Lalb_Chr19g0137471' => 'lal', 'Lalb_Chr22g0350651' => 'lal', 'Lalb_Chr24g0395151' => 'lal', 'Lj1A1231T40' => 'lonja', 'Lj1A221T48' => 'lonja', 'Lj1C924T12' => 'lonja', 'Lj2C993G6' => 'lonja', 'Lj3g0005790' => 'lja', 'Lj3g0015432' => 'lja', 'Lj3g0017722' => 'lja', 'Lj3g0018497' => 'lja', 'Lj4g0025071' => 'lja', 'Lsat_1_v5_gn_1_129680' => 'lsa', 'Lsat_1_v5_gn_2_25321' => 'lsa', 'Lsat_1_v5_gn_2_95461' => 'lsa', 'Lsat_1_v5_gn_4_159620' => 'lsa', 'Lsat_1_v5_gn_6_41301' => 'lsa', 'Lsat_1_v5_gn_6_74660' => 'lsa', 'Lsat_1_v5_gn_7_11520' => 'lsa', 'Lsat_1_v5_gn_9_67680' => 'lsa', 'Manes.04G008300' => 'mes', 'Manes.04G008400' => 'mes', 'Manes.04G026500' => 'mes', 'Manes.10G135300' => 'mes', 'Manes.11G157300' => 'mes', 'Manes.12G074000' => 'mes', 'Manes.16G006200' => 'mes', 'Manes.17G026400' => 'mes', 'Mapoly0024s0086' => 'mpo', 'Mapoly0024s0087' => 'mpo', 'Mapoly0071s0057' => 'mpo', 'Mapoly0204s0012' => 'mpo', 'MBI04_g37681_MAGBIO' => 'mbi', 'MBI05_g17779_MAGBIO' => 'mbi', 'MBI12_g31184_MAGBIO' => 'mbi', 'MBI17_g11083_MAGBIO' => 'mbi', 'MBI18_g03883_MAGBIO' => 'mbi', 'MBI18_g28940_MAGBIO' => 'mbi', 'MCO01G690' => 'mco', 'MD03G1109900' => 'mdo', 'MD03G1134800' => 'mdo', 'MD05G1348000' => 'mdo', 'MD10G1322400' => 'mdo', 'MD11G1123300' => 'mdo', 'MD11G1157600' => 'mdo', 'Medtr2g084875' => 'mtr', 'Medtr2g088130' => 'mtr', 'Medtr4g055310' => 'mtr', 'Medtr4g061070' => 'mtr', 'Medtr4g132250' => 'mtr', 'MELO3C004795.2' => 'cme', 'MELO3C004797.2' => 'cme', 'MELO3C007396.2' => 'cme', 'MELO3C019277.2' => 'cme', 'MELO3C021449.2' => 'cme', 'MELO3C025736.2' => 'cme', 'Migut.D02175' => 'egut', 'Migut.H01573' => 'egut', 'Migut.M01327' => 'egut', 'Migut.N02513' => 'egut', 'MSTRG.14638' => 'ama', 'MSTRG.18632' => 'ama', 'MSTRG.7203' => 'ama', 'Nitab4.5_0000533g0140' => 'nta', 'Nitab4.5_0000888g0150' => 'nta', 'Nitab4.5_0001453g0040' => 'nta', 'Nitab4.5_0002827g0090' => 'nta', 'Nitab4.5_0003082g0040' => 'nta', 'Nitab4.5_0007799g0040' => 'nta', 'Nitab4.5_0008983g0010' => 'nta', 'Nitab4.5_0009017g0020' => 'nta', 'Nn1g02132' => 'nnu', 'Nn1g03492' => 'nnu', 'Nn1g03493' => 'nnu', 'Nn1g03494' => 'nnu', 'Nn1g07164' => 'nnu', 'Nn1g07291' => 'nnu', 'Nn2g10655' => 'nnu', 'Nn2g11652' => 'nnu', 'Nn2g14008' => 'nnu', 'Nn3g17476' => 'nnu', 'Nn3g17477' => 'nnu', 'Nn4g22370' => 'nnu', 'Nn4g25255' => 'nnu', 'Nn5g27755' => 'nnu', 'Nn6g34260' => 'nnu', 'Nn6g35041' => 'nnu', 'Oeu005924.1' => 'oeu', 'Oeu008383.1' => 'oeu', 'Oeu014928.1' => 'oeu', 'Oeu019889.1' => 'oeu', 'Oeu022271.1' => 'oeu', 'Oeu025271.1' => 'oeu', 'Oeu036302.1' => 'oeu', 'Oeu044100.1' => 'oeu', 'Os01g0528300' => 'osa', 'Os03g0286200' => 'osa', 'Os04g0406600' => 'osa', 'Os07g0512000' => 'osa', 'Os07g0694600' => 'osa', 'Os08g0411000' => 'osa', 'Os09g0565700' => 'osa', 'Os09g0566050' => 'osa', 'Os10g0523700' => 'osa', 'Peaxi162Scf00002g00514' => 'pax', 'Peaxi162Scf00047g01817' => 'pax', 'Peaxi162Scf00114g00001' => 'pax', 'Peaxi162Scf00147g00613' => 'pax', 'Peaxi162Scf00389g00425' => 'pax', 'PGR042G1139' => 'pgr', 'PGR042G3273' => 'pgr', 'PGR102G2180' => 'pgr', 'PGR119G0234' => 'pgr', 'PGR119G0668' => 'pgr', 'PGSC0003DMG400007122' => 'stu', 'PGSC0003DMG400016478' => 'stu', 'PGSC0003DMG400025374' => 'stu', 'PGSC0003DMG400026536' => 'stu', 'Phvul.003G079600' => 'pvu', 'Phvul.005G115600' => 'pvu', 'Phvul.005G127100' => 'pvu', 'Phvul.006G149500' => 'pvu', 'Phvul.006G149600' => 'pvu', 'Phvul.011G071800' => 'pvu', 'Phvul.011G090400' => 'pvu', 'Potri.004G013400' => 'ptr', 'Potri.004G188100' => 'ptr', 'Potri.008G195500' => 'ptr', 'Potri.009G148800' => 'ptr', 'Potri.011G004700' => 'ptr', 'Pp3c17_22810' => 'ppa', 'Pp3c18_4480' => 'ppa', 'Pp3c19_13030' => 'ppa', 'Pp3c1_33620' => 'ppa', 'Pp3c2_9380' => 'ppa', 'PRCOL_00001023' => 'pco', 'Prupe.3G216300' => 'ppe', 'Prupe.4G019500' => 'ppe', 'Prupe.6G092500' => 'ppe', 'Prupe.6G119200' => 'ppe', 'Psat0s1945g0080' => 'psa', 'Psat0s4167g0040' => 'psa', 'Psat1g185800' => 'psa', 'Psat4g006440' => 'psa', 'Psat4g006480' => 'psa', 'Psat4g168120' => 'psa', 'Psat5g255680' => 'psa', 'Psat5g261760' => 'psa', 'Psat7g222120' => 'psa', 'PSO063G7252' => 'pso', 'PSO170G4778' => 'pso', 'PSO210G2249' => 'pso', 'PSO339G2411' => 'pso', 'PSO339G2457' => 'pso', 'PSO339G2854' => 'pso', 'PSO339G4288' => 'pso', 'PSO339G4615' => 'pso', 'PSO384G2796' => 'pso', 'PSO384G2940' => 'pso', 'PSO384G4227' => 'pso', 'PSO478G1425' => 'pso', 'PSO541G3863' => 'pso', 'PSO675G0507' => 'pso', 'PSO782G0338' => 'pso', 'PSO832G0644' => 'pso', 'QL01p013664' => 'qlo', 'QL01p036598' => 'qlo', 'QL05p072984' => 'qlo', 'QL08p005768' => 'qlo', 'QL08p032743' => 'qlo', 'QL93p0073_0439' => 'qlo', 'QL93p0073_0444' => 'qlo', 'RcHm_v2.0_Chr5g0002851' => 'rch', 'RcHm_v2.0_Chr5g0055201' => 'rch', 'RcHm_v2.0_Chr5g0061191' => 'rch', 'RcHm_v2.0_Chr7g0203231' => 'rch', 'Rhsim01G0208100' => 'rsi', 'Rhsim01G0208200' => 'rsi', 'Rhsim02G0106500' => 'rsi', 'Rhsim03G0107900' => 'rsi', 'Rhsim06G0163400' => 'rsi', 'Rhsim13G0105200' => 'rsi', 'Sabra04G0006300' => 'sbr', 'Sabra04G0127000' => 'sbr', 'Sabra08G0148700' => 'sbr', 'Sabra09G0117400' => 'sbr', 'SalBow1G3326' => 'sbo', 'SalBow3G3228' => 'sbo', 'SalBow6G1634' => 'sbo', 'SalBow6G3603' => 'sbo', 'SalBow6G5266' => 'sbo', 'SalBow7G2265' => 'sbo', 'SalBow8G0850' => 'sbo', 'SalBow8G2592' => 'sbo', 'Sc05g0009240' => 'sci', 'Sc12g0002300' => 'sci', 'Sc21g0000100' => 'sci', 'Sc21g0004720' => 'sci', 'Sed0002949' => 'sed', 'Sed0004114' => 'sed', 'Sed0004306' => 'sed', 'Sed0006172' => 'sed', 'Sed0008413' => 'sed', 'Sed0013809' => 'sed', 'Sed0019556' => 'sed', 'SEGI_03570' => 'sgi', 'SEGI_07859' => 'sgi', 'SEGI_15042' => 'sgi', 'SEGI_16263' => 'sgi', 'SEGI_16552' => 'sgi', 'SEGI_24331' => 'sgi', 'SEGI_27316' => 'sgi', 'SEGI_29521' => 'sgi', 'SEGI_41342' => 'sgi', 'SGA_v2.0_scaffold27G11617' => 'sas', 'SGA_v2.0_scaffold316G48428' => 'sas', 'SGA_v2.0_scaffold49G18261' => 'sas', 'SGA_v2.0_scaffold7G03831' => 'sas', 'SGA_v2.0_scaffold93G28359' => 'sas', 'SHI02210' => 'shi', 'SHI06028' => 'shi', 'SHI06321' => 'shi', 'SMO111G0012' => 'smo', 'SMO228G0080' => 'smo', 'SMO356G0756' => 'smo', 'Solyc02g080620.3' => 'sly', 'Solyc06g074530.1' => 'sly', 'Solyc11g066890.1' => 'sly', 'Solyc11g072520.3' => 'sly', 'Sopen02g025330' => 'spe', 'Sopen06g031000' => 'spe', 'Sopen09g008240' => 'spe', 'Sopen09g025210' => 'spe', 'Sopen11g026600' => 'spe', 'Sopen11g030170' => 'spe', 'Sp1g10420' => 'spa', 'Sp3g06570' => 'spa', 'Sp4g10660' => 'spa', 'Sp5g16460' => 'spa', 'Sp6g22710' => 'spa', 'TAR365G0112' => 'tar', 'TAR369G0717' => 'tar', 'TAR374G0976' => 'tar', 'TAR623G1128' => 'tar', 'TAR626G1937' => 'tar', 'TAR627G0123' => 'tar', 'TAR628G0305' => 'tar', 'TAR636G1176' => 'tar', 'TAR636G2442' => 'tar', 'THA.LOC104800556' => 'tha', 'THA.LOC104809501' => 'tha', 'THA.LOC104815126' => 'tha', 'THA.LOC104815732' => 'tha', 'THA.LOC104823528' => 'tha', 'Thecc.02G365600' => 'tca', 'Thecc.06G222300' => 'tca', 'Thecc.09G261800' => 'tca', 'Thecc.09G291400' => 'tca', 'Thhalv10003028m.g' => 'esa', 'Thhalv10007886m.g' => 'esa', 'Thhalv10016085m.g' => 'esa', 'Thhalv10016681m.g' => 'esa', 'Thhalv10020951m.g' => 'esa', 'TPR.G15598' => 'tpr', 'TPR.G29305' => 'tpr', 'TPR.G32395' => 'tpr', 'TPR.G36998' => 'tpr', 'TPR.G4227' => 'tpr', 'TWI18G1433' => 'twi', 'TWI31G0755' => 'twi', 'TWI38G0912' => 'twi', 'TWI75G1097' => 'twi', 'TWI75G1619' => 'twi', 'TWI79G1336' => 'twi', 'unitig_0.g943' => 'ugi', 'unitig_0.g944' => 'ugi', 'unitig_22.g6646' => 'ugi', 'unitig_37.g12681' => 'ugi', 'unitig_8.g3290' => 'ugi', 'vmacro03278' => 'vma', 'vmacro12197' => 'vma', 'vmacro14478' => 'vma', 'vmacro15787' => 'vma', 'vmacro15789' => 'vma', 'vmacro15790' => 'vma', 'vmacro15806' => 'vma', 'vmacro22907' => 'vma', 'vmacro22908' => 'vma', 'vmacro22909' => 'vma', 'vmacro23108' => 'vma', 'VMungo0540G0540' => 'vmu', 'VMungo0540G2468' => 'vmu', 'VMungo1080G0390' => 'vmu', 'VMungo1080G1165' => 'vmu', 'VMungo1127G0170' => 'vmu', 'VMungo1127G2099' => 'vmu', 'VMungo1215G3013' => 'vmu', 'Zm00001eb013110' => 'zma', 'Zm00001eb084260' => 'zma', 'Zm00001eb096110' => 'zma', 'Zm00001eb217510' => 'zma', 'Zm00001eb322550' => 'zma', 'Zm00001eb390770' => 'zma', 'Zm00001eb397170' => 'zma', 'Zm00001eb404610' => 'zma', 'Zm00001eb421790' => 'zma' ) $gf_id = 'HOM05D000911' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000911' ) $data_identifier = 'HOM05D000911' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 16, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 5, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 6, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 8, 'nnu' => (int) 16, 'oeu' => (int) 8, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 5, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 16, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421790' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000911', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27780' => 'bna', 'A03p35380' => 'bna', 'A04p21160' => 'bna', 'A05p40570' => 'bna', 'A06p26900' => 'bna', 'A08p33230' => 'bna', 'A09p65960' => 'bna', 'A10p18290' => 'bna', 'Aa31LG1G12990' => 'aar', 'Aa31LG1G2980' => 'aar', 'Aa31LG4G14320' => 'aar', 'Aa31LG7G11800' => 'aar', 'Aa31sc36G50' => 'aar', 'Aa31sc36G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3721' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5459' => 'aag', 'Actinidia03028' => 'ach', 'Actinidia03753' => 'ach', 'Actinidia04187' => 'ach', 'Actinidia05509' => 'ach', 'Actinidia24180' => 'ach', 'Actinidia26906' => 'ach', 'Actinidia37097' => 'ach', 'Actinidia38249' => 'ach', 'Ah.01g003470' => 'amhyb', 'Ah.01g004580' => 'amhyb', 'Ah.01g014850' => 'amhyb', 'Ah.01g016830' => 'amhyb', 'Ah.14g088000' => 'amhyb', 'AL1G22980' => 'aly', 'AL3G18990' => 'aly', 'AL4G22440' => 'aly', 'AL4G33180' => 'aly', 'AL5G22920' => 'aly', 'AL6G33660' => 'aly', 'AL8G20720' => 'aly', 'Aqoxy1G00935' => 'aox', 'Aqoxy1G02094' => 'aox', 'Aqoxy2G01239' => 'aox', 'Aqoxy4G01870' => 'aox', 'Aqoxy7G00450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.36ZVTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71EM27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5D6C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH3WRE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3NCM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RIM768' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YB5YRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z36GDV' => 'arhy', 'AT1G08250' => 'ath', 'AT1G11790' => 'ath', 'AT2G27820' => 'ath', 'AT3G07630' => 'ath', 'AT3G44720' => 'ath', 'AT5G22630' => 'ath', 'ATR0693G304' => 'atr', 'ATR0794G109' => 'atr', 'ATR0820G120' => 'atr', 'ATR1159G064' => 'atr', 'Atru.chr10.2239' => 'acertr', 'Atru.chr3.3371' => 'acertr', 'Atru.chr6.3202' => 'acertr', 'AUR62006499' => 'cqu', 'AUR62012718' => 'cqu', 'AUR62021938' => 'cqu', 'AUR62023932' => 'cqu', 'AUR62025034' => 'cqu', 'AUR62025035' => 'cqu', 'AUR62038307' => 'cqu', 'AUR62043466' => 'cqu', 'BcaB02g10748' => 'bca', 'BcaB03g13231' => 'bca', 'BcaB03g14689' => 'bca', 'BcaB05g22716' => 'bca', 'BcaB06g28172' => 'bca', 'BcaB08g36413' => 'bca', 'BcaC01g02186' => 'bca', 'BcaC01g04272' => 'bca', 'BcaC02g08080' => 'bca', 'BcaC02g08227' => 'bca', 'BcaC03g13901' => 'bca', 'BcaC04g19593' => 'bca', 'BcaC04g20874' => 'bca', 'BcaC05g29557' => 'bca', 'BcaC06g35505' => 'bca', 'BcaC07g41954' => 'bca', 'BcaC07g41955' => 'bca', 'BcaC07g41956' => 'bca', 'BcaC07g42519' => 'bca', 'BcaC07g42520' => 'bca', 'BcaC07g42523' => 'bca', 'BcaC07g42524' => 'bca', 'BcaC07g42525' => 'bca', 'BcaC08g47480' => 'bca', 'BcaC08g47481' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00530' => 'bna', 'BolC2t07178H' => 'bol', 'BolC3t16567H' => 'bol', 'BolC4t27234H' => 'bol', 'BolC5t29728H' => 'bol', 'BolC5t34622H' => 'bol', 'BolC6t40321H' => 'bol', 'BolC7t42028H' => 'bol', 'BolC8t49125H' => 'bol', 'BolC8t52538H' => 'bol', 'BolC8t52539H' => 'bol', 'BolC9t56681H' => 'bol', 'BolC9t58266H' => 'bol', 'BolSC21t60294H' => 'bol', 'BraA02t05670Z' => 'bra', 'BraA03t12716Z' => 'bra', 'BraA04t17685Z' => 'bra', 'BraA05t22788Z' => 'bra', 'BraA06t24032Z' => 'bra', 'BraA06t25625Z' => 'bra', 'BraA07t27930Z' => 'bra', 'BraA08t35242Z' => 'bra', 'BraA09t38609Z' => 'bra', 'BraA10t43905Z' => 'bra', 'C02p11060' => 'bna', 'C03p42990' => 'bna', 'C03p67310' => 'bna', 'C04p56990' => 'bna', 'C04p58660' => 'bna', 'C05p09890' => 'bna', 'C05p59680' => 'bna', 'C06p19830' => 'bna', 'C06p53040' => 'bna', 'C07p15230' => 'bna', 'C08p50070' => 'bna', 'C08p50090' => 'bna', 'C09p38330' => 'bna', 'C09p53940' => 'bna', 'CAN.G1014.1' => 'can', 'CAN.G644.30' => 'can', 'CAN.G84.47' => 'can', 'CAN.G919.8' => 'can', 'CANSAT54G0113' => 'cansat', 'CANSAT54G1286' => 'cansat', 'CANSAT64G1020' => 'cansat', 'CARHR008080' => 'chi', 'CARHR008090' => 'chi', 'CARHR012130' => 'chi', 'CARHR038390' => 'chi', 'CARHR082330' => 'chi', 'CARHR120520' => 'chi', 'CARHR151470' => 'chi', 'CARHR190950' => 'chi', 'Carub.0001s0760' => 'cru', 'Carub.0001s1146' => 'cru', 'Carub.0003s0721' => 'cru', 'Carub.0004s0858' => 'cru', 'Carub.0005s1040' => 'cru', 'Carub.0006s2035' => 'cru', 'Carub.0015s0005' => 'cru', 'Ca_01607_v3' => 'car', 'Ca_01677_v3' => 'car', 'Ca_06087_v3' => 'car', 'Ca_19238_v3' => 'car', 'Ca_19373_v3' => 'car', 'Ca_21079_v3' => 'car', 'CBR_g54016' => 'cbr', 'CBR_g54018' => 'cbr', 'CBR_g54020' => 'cbr', 'Cc01_g09780' => 'ccan', 'Cc01_g11680' => 'ccan', 'Cc02_g15610' => 'ccan', 'Cc05_g04350' => 'ccan', 'Cc09_g01580' => 'ccan', 'CDE01G0795' => 'cde', 'CDE02G2024' => 'cde', 'CDE02G2260' => 'cde', 'CDE02G4561' => 'cde', 'CDE05G2733' => 'cde', 'CDE05G3422' => 'cde', 'CDE06G2003' => 'cde', 'CDE08G0576' => 'cde', 'CDE09G0048' => 'cde', 'CDE11G0805' => 'cde', 'Cfa003644' => 'cfa', 'Cfa006290' => 'cfa', 'Cfa010080' => 'cfa', 'Cfa011376' => 'cfa', 'Cfa011576' => 'cfa', 'Cfa011577' => 'cfa', 'Cfa014389' => 'cfa', 'Ciclev10006044m.g' => 'ccl', 'Ciclev10006954m.g' => 'ccl', 'Ciclev10015131m.g' => 'ccl', 'Ciclev10015580m.g' => 'ccl', 'Ciclev10028359m.g' => 'ccl', 'Ciclev10028573m.g' => 'ccl', 'CiPaw.03G159300' => 'cil', 'CiPaw.04G115100' => 'cil', 'CiPaw.09G092800' => 'cil', 'CiPaw.10G071800' => 'cil', 'CiPaw.13G105800' => 'cil', 'CiPaw.13G141000' => 'cil', 'CiPaw.14G103400' => 'cil', 'ClCG01G012700' => 'cla', 'ClCG01G012720' => 'cla', 'ClCG01G021920' => 'cla', 'ClCG02G008870' => 'cla', 'ClCG02G020840' => 'cla', 'ClCG02G021930' => 'cla', 'COL.COLO4_19302' => 'col', 'COL.COLO4_25262' => 'col', 'COL.COLO4_31788' => 'col', 'Cpa.g.c34684' => 'cpa', 'Cpa.g.c36520.1' => 'cpa', 'Cpa.g.c45626' => 'cpa', 'Cpa.g.sc121.17' => 'cpa', 'Cpa.g.sc13.22' => 'cpa', 'Cpa.g.sc87.88' => 'cpa', 'Cre06.g261800' => 'cre', 'CsaV3_1G014500' => 'csa', 'CsaV3_1G014510' => 'csa', 'CsaV3_2G034880' => 'csa', 'CsaV3_6G014760' => 'csa', 'CsaV3_6G021500' => 'csa', 'CsaV3_6G048980' => 'csa', 'CSS0002511' => 'camsi', 'CSS0007556' => 'camsi', 'CSS0008532' => 'camsi', 'CSS0009709' => 'camsi', 'CSS0010486' => 'camsi', 'CSS0016768' => 'camsi', 'CSS0023512' => 'camsi', 'CSS0025341' => 'camsi', 'CSS0027999' => 'camsi', 'CSS0028944' => 'camsi', 'CSS0032292' => 'camsi', 'CSS0032464' => 'camsi', 'CSS0037153' => 'camsi', 'CSS0039256' => 'camsi', 'CSS0048392' => 'camsi', 'CSS0050458' => 'camsi', 'DCAR_004224' => 'dca', 'DCAR_006147' => 'dca', 'DCAR_006465' => 'dca', 'DCAR_008159' => 'dca', 'DCAR_012164' => 'dca', 'DCAR_019764' => 'dca', 'Dinv05418' => 'din', 'Dinv10839' => 'din', 'Dinv12521' => 'din', 'Dinv13900' => 'din', 'Dinv29426' => 'din', 'Duzib150G0263' => 'dzi', 'Duzib168G1178' => 'dzi', 'Duzib168G1924' => 'dzi', 'Duzib170G0299' => 'dzi', 'Duzib170G0813' => 'dzi', 'Duzib235G1128' => 'dzi', 'Duzib248G1060' => 'dzi', 'ECA232G1910' => 'eca', 'ECA233G4621' => 'eca', 'ECA238G1216' => 'eca', 'ECA238G1784' => 'eca', 'ECA248G1242' => 'eca', 'EL10Ac8g20071' => 'bvu', 'EL10Ac9g21086' => 'bvu', 'EL10Ac9g22407' => 'bvu', 'EL10Ac9g22412' => 'bvu', 'Eucgr.A01119' => 'egr', 'Eucgr.E04043' => 'egr', 'Eucgr.J00428' => 'egr', 'Eucgr.J00958' => 'egr', 'FAN11G3091' => 'fan', 'FAN11G3651' => 'fan', 'FAN16G2566' => 'fan', 'FAN21G3155' => 'fan', 'FAN21G3400' => 'fan', 'FAN21G3543' => 'fan', 'FAN25G0234' => 'fan', 'FAN25G1422' => 'fan', 'FAN25G3392' => 'fan', 'FvH4_3g01940' => 'fve', 'FvH4_3g29870' => 'fve', 'FvH4_3g33680' => 'fve', 'Glyma.09G004200' => 'gma', 'Glyma.11G151288' => 'gma', 'Glyma.11G189100' => 'gma', 'Glyma.12G072500' => 'gma', 'Glyma.12G085500' => 'gma', 'Glyma.12G181800' => 'gma', 'Glyma.12G193000' => 'gma', 'Glyma.13G309300' => 'gma', 'Glyma.13G319000' => 'gma', 'Glyma.17G012600' => 'gma', 'Gohir.A06G148600' => 'ghi', 'Gohir.A07G115800' => 'ghi', 'Gohir.A08G003600' => 'ghi', 'Gohir.A09G093300' => 'ghi', 'Gohir.A09G105400' => 'ghi', 'Gohir.A09G105500' => 'ghi', 'Gohir.D06G154600' => 'ghi', 'Gohir.D07G120200' => 'ghi', 'Gohir.D08G013900' => 'ghi', 'Gohir.D09G093100' => 'ghi', 'Gohir.D09G102200' => 'ghi', 'Gohir.D09G102300' => 'ghi', 'Gorai.001G129400' => 'gra', 'Gorai.004G008200' => 'gra', 'Gorai.006G109800' => 'gra', 'Gorai.006G119500' => 'gra', 'Gorai.006G121300' => 'gra', 'Gorai.010G180700' => 'gra', 'GSVIVG01012716001' => 'vvi', 'GSVIVG01025118001' => 'vvi', 'GSVIVG01030439001' => 'vvi', 'GSVIVG01031397001' => 'vvi', 'HanXRQChr01g0004201' => 'han', 'HanXRQChr02g0054941' => 'han', 'HanXRQChr05g0141811' => 'han', 'HanXRQChr07g0197751' => 'han', 'HanXRQChr11g0346691' => 'han', 'HanXRQChr13g0396971' => 'han', 'HanXRQChr14g0432951' => 'han', 'HanXRQChr14g0452001' => 'han', 'HanXRQChr15g0496681' => 'han', 'HanXRQChr17g0557491' => 'han', 'HanXRQChr17g0557501' => 'han', 'Haze_06809' => 'cav', 'Haze_12852' => 'cav', 'Haze_15850' => 'cav', 'Haze_23446' => 'cav', 'Haze_23942' => 'cav', 'Haze_23943' => 'cav', 'Hma1.2p1_0091F.1_g046450' => 'hma', 'Hma1.2p1_0128F.1_g059910' => 'hma', 'Hma1.2p1_0249F.1_g102260' => 'hma', 'Hma1.2p1_0453F.1_g156190' => 'hma', 'Hma1.2p1_0695F.1_g204380' => 'hma', 'Hma1.2p1_0749F.1_g212650' => 'hma', 'Hma1.2p1_2156F.1_g315420' => 'hma', 'Hma1.2p1_2686F.1_g326940' => 'hma', 'HPP92_006428' => 'vpl', 'HPP92_012069' => 'vpl', 'HPP92_014129' => 'vpl', 'HPP92_014133' => 'vpl', 'HPP92_017315' => 'vpl', 'HPP92_026445' => 'vpl', 'HPP92_026446' => 'vpl', 'Hund00774' => 'sun', 'Hund07682' => 'sun', 'Hund21413' => 'sun', 'Hund23462' => 'sun', 'Hund23463' => 'sun', 'Lalb_Chr03g0027911' => 'lal', 'Lalb_Chr13g0304271' => 'lal', 'Lalb_Chr19g0137471' => 'lal', 'Lalb_Chr22g0350651' => 'lal', 'Lalb_Chr24g0395151' => 'lal', 'Lj1A1231T40' => 'lonja', 'Lj1A221T48' => 'lonja', 'Lj1C924T12' => 'lonja', 'Lj2C993G6' => 'lonja', 'Lj3g0005790' => 'lja', 'Lj3g0015432' => 'lja', 'Lj3g0017722' => 'lja', 'Lj3g0018497' => 'lja', 'Lj4g0025071' => 'lja', 'Lsat_1_v5_gn_1_129680' => 'lsa', 'Lsat_1_v5_gn_2_25321' => 'lsa', 'Lsat_1_v5_gn_2_95461' => 'lsa', 'Lsat_1_v5_gn_4_159620' => 'lsa', 'Lsat_1_v5_gn_6_41301' => 'lsa', 'Lsat_1_v5_gn_6_74660' => 'lsa', 'Lsat_1_v5_gn_7_11520' => 'lsa', 'Lsat_1_v5_gn_9_67680' => 'lsa', 'Manes.04G008300' => 'mes', 'Manes.04G008400' => 'mes', 'Manes.04G026500' => 'mes', 'Manes.10G135300' => 'mes', 'Manes.11G157300' => 'mes', 'Manes.12G074000' => 'mes', 'Manes.16G006200' => 'mes', 'Manes.17G026400' => 'mes', 'Mapoly0024s0086' => 'mpo', 'Mapoly0024s0087' => 'mpo', 'Mapoly0071s0057' => 'mpo', 'Mapoly0204s0012' => 'mpo', 'MBI04_g37681_MAGBIO' => 'mbi', 'MBI05_g17779_MAGBIO' => 'mbi', 'MBI12_g31184_MAGBIO' => 'mbi', 'MBI17_g11083_MAGBIO' => 'mbi', 'MBI18_g03883_MAGBIO' => 'mbi', 'MBI18_g28940_MAGBIO' => 'mbi', 'MCO01G690' => 'mco', 'MD03G1109900' => 'mdo', 'MD03G1134800' => 'mdo', 'MD05G1348000' => 'mdo', 'MD10G1322400' => 'mdo', 'MD11G1123300' => 'mdo', 'MD11G1157600' => 'mdo', 'Medtr2g084875' => 'mtr', 'Medtr2g088130' => 'mtr', 'Medtr4g055310' => 'mtr', 'Medtr4g061070' => 'mtr', 'Medtr4g132250' => 'mtr', 'MELO3C004795.2' => 'cme', 'MELO3C004797.2' => 'cme', 'MELO3C007396.2' => 'cme', 'MELO3C019277.2' => 'cme', 'MELO3C021449.2' => 'cme', 'MELO3C025736.2' => 'cme', 'Migut.D02175' => 'egut', 'Migut.H01573' => 'egut', 'Migut.M01327' => 'egut', 'Migut.N02513' => 'egut', 'MSTRG.14638' => 'ama', 'MSTRG.18632' => 'ama', 'MSTRG.7203' => 'ama', 'Nitab4.5_0000533g0140' => 'nta', 'Nitab4.5_0000888g0150' => 'nta', 'Nitab4.5_0001453g0040' => 'nta', 'Nitab4.5_0002827g0090' => 'nta', 'Nitab4.5_0003082g0040' => 'nta', 'Nitab4.5_0007799g0040' => 'nta', 'Nitab4.5_0008983g0010' => 'nta', 'Nitab4.5_0009017g0020' => 'nta', 'Nn1g02132' => 'nnu', 'Nn1g03492' => 'nnu', 'Nn1g03493' => 'nnu', 'Nn1g03494' => 'nnu', 'Nn1g07164' => 'nnu', 'Nn1g07291' => 'nnu', 'Nn2g10655' => 'nnu', 'Nn2g11652' => 'nnu', 'Nn2g14008' => 'nnu', 'Nn3g17476' => 'nnu', 'Nn3g17477' => 'nnu', 'Nn4g22370' => 'nnu', 'Nn4g25255' => 'nnu', 'Nn5g27755' => 'nnu', 'Nn6g34260' => 'nnu', 'Nn6g35041' => 'nnu', 'Oeu005924.1' => 'oeu', 'Oeu008383.1' => 'oeu', 'Oeu014928.1' => 'oeu', 'Oeu019889.1' => 'oeu', 'Oeu022271.1' => 'oeu', 'Oeu025271.1' => 'oeu', 'Oeu036302.1' => 'oeu', 'Oeu044100.1' => 'oeu', 'Os01g0528300' => 'osa', 'Os03g0286200' => 'osa', 'Os04g0406600' => 'osa', 'Os07g0512000' => 'osa', 'Os07g0694600' => 'osa', 'Os08g0411000' => 'osa', 'Os09g0565700' => 'osa', 'Os09g0566050' => 'osa', 'Os10g0523700' => 'osa', 'Peaxi162Scf00002g00514' => 'pax', 'Peaxi162Scf00047g01817' => 'pax', 'Peaxi162Scf00114g00001' => 'pax', 'Peaxi162Scf00147g00613' => 'pax', 'Peaxi162Scf00389g00425' => 'pax', 'PGR042G1139' => 'pgr', 'PGR042G3273' => 'pgr', 'PGR102G2180' => 'pgr', 'PGR119G0234' => 'pgr', 'PGR119G0668' => 'pgr', 'PGSC0003DMG400007122' => 'stu', 'PGSC0003DMG400016478' => 'stu', 'PGSC0003DMG400025374' => 'stu', 'PGSC0003DMG400026536' => 'stu', 'Phvul.003G079600' => 'pvu', 'Phvul.005G115600' => 'pvu', 'Phvul.005G127100' => 'pvu', 'Phvul.006G149500' => 'pvu', 'Phvul.006G149600' => 'pvu', 'Phvul.011G071800' => 'pvu', 'Phvul.011G090400' => 'pvu', 'Potri.004G013400' => 'ptr', 'Potri.004G188100' => 'ptr', 'Potri.008G195500' => 'ptr', 'Potri.009G148800' => 'ptr', 'Potri.011G004700' => 'ptr', 'Pp3c17_22810' => 'ppa', 'Pp3c18_4480' => 'ppa', 'Pp3c19_13030' => 'ppa', 'Pp3c1_33620' => 'ppa', 'Pp3c2_9380' => 'ppa', 'PRCOL_00001023' => 'pco', 'Prupe.3G216300' => 'ppe', 'Prupe.4G019500' => 'ppe', 'Prupe.6G092500' => 'ppe', 'Prupe.6G119200' => 'ppe', 'Psat0s1945g0080' => 'psa', 'Psat0s4167g0040' => 'psa', 'Psat1g185800' => 'psa', 'Psat4g006440' => 'psa', 'Psat4g006480' => 'psa', 'Psat4g168120' => 'psa', 'Psat5g255680' => 'psa', 'Psat5g261760' => 'psa', 'Psat7g222120' => 'psa', 'PSO063G7252' => 'pso', 'PSO170G4778' => 'pso', 'PSO210G2249' => 'pso', 'PSO339G2411' => 'pso', 'PSO339G2457' => 'pso', 'PSO339G2854' => 'pso', 'PSO339G4288' => 'pso', 'PSO339G4615' => 'pso', 'PSO384G2796' => 'pso', 'PSO384G2940' => 'pso', 'PSO384G4227' => 'pso', 'PSO478G1425' => 'pso', 'PSO541G3863' => 'pso', 'PSO675G0507' => 'pso', 'PSO782G0338' => 'pso', 'PSO832G0644' => 'pso', 'QL01p013664' => 'qlo', 'QL01p036598' => 'qlo', 'QL05p072984' => 'qlo', 'QL08p005768' => 'qlo', 'QL08p032743' => 'qlo', 'QL93p0073_0439' => 'qlo', 'QL93p0073_0444' => 'qlo', 'RcHm_v2.0_Chr5g0002851' => 'rch', 'RcHm_v2.0_Chr5g0055201' => 'rch', 'RcHm_v2.0_Chr5g0061191' => 'rch', 'RcHm_v2.0_Chr7g0203231' => 'rch', 'Rhsim01G0208100' => 'rsi', 'Rhsim01G0208200' => 'rsi', 'Rhsim02G0106500' => 'rsi', 'Rhsim03G0107900' => 'rsi', 'Rhsim06G0163400' => 'rsi', 'Rhsim13G0105200' => 'rsi', 'Sabra04G0006300' => 'sbr', 'Sabra04G0127000' => 'sbr', 'Sabra08G0148700' => 'sbr', 'Sabra09G0117400' => 'sbr', 'SalBow1G3326' => 'sbo', 'SalBow3G3228' => 'sbo', 'SalBow6G1634' => 'sbo', 'SalBow6G3603' => 'sbo', 'SalBow6G5266' => 'sbo', 'SalBow7G2265' => 'sbo', 'SalBow8G0850' => 'sbo', 'SalBow8G2592' => 'sbo', 'Sc05g0009240' => 'sci', 'Sc12g0002300' => 'sci', 'Sc21g0000100' => 'sci', 'Sc21g0004720' => 'sci', 'Sed0002949' => 'sed', 'Sed0004114' => 'sed', 'Sed0004306' => 'sed', 'Sed0006172' => 'sed', 'Sed0008413' => 'sed', 'Sed0013809' => 'sed', 'Sed0019556' => 'sed', 'SEGI_03570' => 'sgi', 'SEGI_07859' => 'sgi', 'SEGI_15042' => 'sgi', 'SEGI_16263' => 'sgi', 'SEGI_16552' => 'sgi', 'SEGI_24331' => 'sgi', 'SEGI_27316' => 'sgi', 'SEGI_29521' => 'sgi', 'SEGI_41342' => 'sgi', 'SGA_v2.0_scaffold27G11617' => 'sas', 'SGA_v2.0_scaffold316G48428' => 'sas', 'SGA_v2.0_scaffold49G18261' => 'sas', 'SGA_v2.0_scaffold7G03831' => 'sas', 'SGA_v2.0_scaffold93G28359' => 'sas', 'SHI02210' => 'shi', 'SHI06028' => 'shi', 'SHI06321' => 'shi', 'SMO111G0012' => 'smo', 'SMO228G0080' => 'smo', 'SMO356G0756' => 'smo', 'Solyc02g080620.3' => 'sly', 'Solyc06g074530.1' => 'sly', 'Solyc11g066890.1' => 'sly', 'Solyc11g072520.3' => 'sly', 'Sopen02g025330' => 'spe', 'Sopen06g031000' => 'spe', 'Sopen09g008240' => 'spe', 'Sopen09g025210' => 'spe', 'Sopen11g026600' => 'spe', 'Sopen11g030170' => 'spe', 'Sp1g10420' => 'spa', 'Sp3g06570' => 'spa', 'Sp4g10660' => 'spa', 'Sp5g16460' => 'spa', 'Sp6g22710' => 'spa', 'TAR365G0112' => 'tar', 'TAR369G0717' => 'tar', 'TAR374G0976' => 'tar', 'TAR623G1128' => 'tar', 'TAR626G1937' => 'tar', 'TAR627G0123' => 'tar', 'TAR628G0305' => 'tar', 'TAR636G1176' => 'tar', 'TAR636G2442' => 'tar', 'THA.LOC104800556' => 'tha', 'THA.LOC104809501' => 'tha', 'THA.LOC104815126' => 'tha', 'THA.LOC104815732' => 'tha', 'THA.LOC104823528' => 'tha', 'Thecc.02G365600' => 'tca', 'Thecc.06G222300' => 'tca', 'Thecc.09G261800' => 'tca', 'Thecc.09G291400' => 'tca', 'Thhalv10003028m.g' => 'esa', 'Thhalv10007886m.g' => 'esa', 'Thhalv10016085m.g' => 'esa', 'Thhalv10016681m.g' => 'esa', 'Thhalv10020951m.g' => 'esa', 'TPR.G15598' => 'tpr', 'TPR.G29305' => 'tpr', 'TPR.G32395' => 'tpr', 'TPR.G36998' => 'tpr', 'TPR.G4227' => 'tpr', 'TWI18G1433' => 'twi', 'TWI31G0755' => 'twi', 'TWI38G0912' => 'twi', 'TWI75G1097' => 'twi', 'TWI75G1619' => 'twi', 'TWI79G1336' => 'twi', 'unitig_0.g943' => 'ugi', 'unitig_0.g944' => 'ugi', 'unitig_22.g6646' => 'ugi', 'unitig_37.g12681' => 'ugi', 'unitig_8.g3290' => 'ugi', 'vmacro03278' => 'vma', 'vmacro12197' => 'vma', 'vmacro14478' => 'vma', 'vmacro15787' => 'vma', 'vmacro15789' => 'vma', 'vmacro15790' => 'vma', 'vmacro15806' => 'vma', 'vmacro22907' => 'vma', 'vmacro22908' => 'vma', 'vmacro22909' => 'vma', 'vmacro23108' => 'vma', 'VMungo0540G0540' => 'vmu', 'VMungo0540G2468' => 'vmu', 'VMungo1080G0390' => 'vmu', 'VMungo1080G1165' => 'vmu', 'VMungo1127G0170' => 'vmu', 'VMungo1127G2099' => 'vmu', 'VMungo1215G3013' => 'vmu', 'Zm00001eb013110' => 'zma', 'Zm00001eb084260' => 'zma', 'Zm00001eb096110' => 'zma', 'Zm00001eb217510' => 'zma', 'Zm00001eb322550' => 'zma', 'Zm00001eb390770' => 'zma', 'Zm00001eb397170' => 'zma', 'Zm00001eb404610' => 'zma', 'Zm00001eb421790' => 'zma' ), 'gf_id' => 'HOM05D000911', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000911' ), 'data_identifier' => 'HOM05D000911', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000911', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27780' => 'bna', 'A03p35380' => 'bna', 'A04p21160' => 'bna', 'A05p40570' => 'bna', 'A06p26900' => 'bna', 'A08p33230' => 'bna', 'A09p65960' => 'bna', 'A10p18290' => 'bna', 'Aa31LG1G12990' => 'aar', 'Aa31LG1G2980' => 'aar', 'Aa31LG4G14320' => 'aar', 'Aa31LG7G11800' => 'aar', 'Aa31sc36G50' => 'aar', 'Aa31sc36G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3721' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5459' => 'aag', 'Actinidia03028' => 'ach', 'Actinidia03753' => 'ach', 'Actinidia04187' => 'ach', 'Actinidia05509' => 'ach', 'Actinidia24180' => 'ach', 'Actinidia26906' => 'ach', 'Actinidia37097' => 'ach', 'Actinidia38249' => 'ach', 'Ah.01g003470' => 'amhyb', 'Ah.01g004580' => 'amhyb', 'Ah.01g014850' => 'amhyb', 'Ah.01g016830' => 'amhyb', 'Ah.14g088000' => 'amhyb', 'AL1G22980' => 'aly', 'AL3G18990' => 'aly', 'AL4G22440' => 'aly', 'AL4G33180' => 'aly', 'AL5G22920' => 'aly', 'AL6G33660' => 'aly', 'AL8G20720' => 'aly', 'Aqoxy1G00935' => 'aox', 'Aqoxy1G02094' => 'aox', 'Aqoxy2G01239' => 'aox', 'Aqoxy4G01870' => 'aox', 'Aqoxy7G00450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.36ZVTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71EM27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5D6C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH3WRE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3NCM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RIM768' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YB5YRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z36GDV' => 'arhy', 'AT1G08250' => 'ath', 'AT1G11790' => 'ath', 'AT2G27820' => 'ath', 'AT3G07630' => 'ath', 'AT3G44720' => 'ath', 'AT5G22630' => 'ath', 'ATR0693G304' => 'atr', 'ATR0794G109' => 'atr', 'ATR0820G120' => 'atr', 'ATR1159G064' => 'atr', 'Atru.chr10.2239' => 'acertr', 'Atru.chr3.3371' => 'acertr', 'Atru.chr6.3202' => 'acertr', 'AUR62006499' => 'cqu', 'AUR62012718' => 'cqu', 'AUR62021938' => 'cqu', 'AUR62023932' => 'cqu', 'AUR62025034' => 'cqu', 'AUR62025035' => 'cqu', 'AUR62038307' => 'cqu', 'AUR62043466' => 'cqu', 'BcaB02g10748' => 'bca', 'BcaB03g13231' => 'bca', 'BcaB03g14689' => 'bca', 'BcaB05g22716' => 'bca', 'BcaB06g28172' => 'bca', 'BcaB08g36413' => 'bca', 'BcaC01g02186' => 'bca', 'BcaC01g04272' => 'bca', 'BcaC02g08080' => 'bca', 'BcaC02g08227' => 'bca', 'BcaC03g13901' => 'bca', 'BcaC04g19593' => 'bca', 'BcaC04g20874' => 'bca', 'BcaC05g29557' => 'bca', 'BcaC06g35505' => 'bca', 'BcaC07g41954' => 'bca', 'BcaC07g41955' => 'bca', 'BcaC07g41956' => 'bca', 'BcaC07g42519' => 'bca', 'BcaC07g42520' => 'bca', 'BcaC07g42523' => 'bca', 'BcaC07g42524' => 'bca', 'BcaC07g42525' => 'bca', 'BcaC08g47480' => 'bca', 'BcaC08g47481' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00530' => 'bna', 'BolC2t07178H' => 'bol', 'BolC3t16567H' => 'bol', 'BolC4t27234H' => 'bol', 'BolC5t29728H' => 'bol', 'BolC5t34622H' => 'bol', 'BolC6t40321H' => 'bol', 'BolC7t42028H' => 'bol', 'BolC8t49125H' => 'bol', 'BolC8t52538H' => 'bol', 'BolC8t52539H' => 'bol', 'BolC9t56681H' => 'bol', 'BolC9t58266H' => 'bol', 'BolSC21t60294H' => 'bol', 'BraA02t05670Z' => 'bra', 'BraA03t12716Z' => 'bra', 'BraA04t17685Z' => 'bra', 'BraA05t22788Z' => 'bra', 'BraA06t24032Z' => 'bra', 'BraA06t25625Z' => 'bra', 'BraA07t27930Z' => 'bra', 'BraA08t35242Z' => 'bra', 'BraA09t38609Z' => 'bra', 'BraA10t43905Z' => 'bra', 'C02p11060' => 'bna', 'C03p42990' => 'bna', 'C03p67310' => 'bna', 'C04p56990' => 'bna', 'C04p58660' => 'bna', 'C05p09890' => 'bna', 'C05p59680' => 'bna', 'C06p19830' => 'bna', 'C06p53040' => 'bna', 'C07p15230' => 'bna', 'C08p50070' => 'bna', 'C08p50090' => 'bna', 'C09p38330' => 'bna', 'C09p53940' => 'bna', 'CAN.G1014.1' => 'can', 'CAN.G644.30' => 'can', 'CAN.G84.47' => 'can', 'CAN.G919.8' => 'can', 'CANSAT54G0113' => 'cansat', 'CANSAT54G1286' => 'cansat', 'CANSAT64G1020' => 'cansat', 'CARHR008080' => 'chi', 'CARHR008090' => 'chi', 'CARHR012130' => 'chi', 'CARHR038390' => 'chi', 'CARHR082330' => 'chi', 'CARHR120520' => 'chi', 'CARHR151470' => 'chi', 'CARHR190950' => 'chi', 'Carub.0001s0760' => 'cru', 'Carub.0001s1146' => 'cru', 'Carub.0003s0721' => 'cru', 'Carub.0004s0858' => 'cru', 'Carub.0005s1040' => 'cru', 'Carub.0006s2035' => 'cru', 'Carub.0015s0005' => 'cru', 'Ca_01607_v3' => 'car', 'Ca_01677_v3' => 'car', 'Ca_06087_v3' => 'car', 'Ca_19238_v3' => 'car', 'Ca_19373_v3' => 'car', 'Ca_21079_v3' => 'car', 'CBR_g54016' => 'cbr', 'CBR_g54018' => 'cbr', 'CBR_g54020' => 'cbr', 'Cc01_g09780' => 'ccan', 'Cc01_g11680' => 'ccan', 'Cc02_g15610' => 'ccan', 'Cc05_g04350' => 'ccan', 'Cc09_g01580' => 'ccan', 'CDE01G0795' => 'cde', 'CDE02G2024' => 'cde', 'CDE02G2260' => 'cde', 'CDE02G4561' => 'cde', 'CDE05G2733' => 'cde', 'CDE05G3422' => 'cde', 'CDE06G2003' => 'cde', 'CDE08G0576' => 'cde', 'CDE09G0048' => 'cde', 'CDE11G0805' => 'cde', 'Cfa003644' => 'cfa', 'Cfa006290' => 'cfa', 'Cfa010080' => 'cfa', 'Cfa011376' => 'cfa', 'Cfa011576' => 'cfa', 'Cfa011577' => 'cfa', 'Cfa014389' => 'cfa', 'Ciclev10006044m.g' => 'ccl', 'Ciclev10006954m.g' => 'ccl', 'Ciclev10015131m.g' => 'ccl', 'Ciclev10015580m.g' => 'ccl', 'Ciclev10028359m.g' => 'ccl', 'Ciclev10028573m.g' => 'ccl', 'CiPaw.03G159300' => 'cil', 'CiPaw.04G115100' => 'cil', 'CiPaw.09G092800' => 'cil', 'CiPaw.10G071800' => 'cil', 'CiPaw.13G105800' => 'cil', 'CiPaw.13G141000' => 'cil', 'CiPaw.14G103400' => 'cil', 'ClCG01G012700' => 'cla', 'ClCG01G012720' => 'cla', 'ClCG01G021920' => 'cla', 'ClCG02G008870' => 'cla', 'ClCG02G020840' => 'cla', 'ClCG02G021930' => 'cla', 'COL.COLO4_19302' => 'col', 'COL.COLO4_25262' => 'col', 'COL.COLO4_31788' => 'col', 'Cpa.g.c34684' => 'cpa', 'Cpa.g.c36520.1' => 'cpa', 'Cpa.g.c45626' => 'cpa', 'Cpa.g.sc121.17' => 'cpa', 'Cpa.g.sc13.22' => 'cpa', 'Cpa.g.sc87.88' => 'cpa', 'Cre06.g261800' => 'cre', 'CsaV3_1G014500' => 'csa', 'CsaV3_1G014510' => 'csa', 'CsaV3_2G034880' => 'csa', 'CsaV3_6G014760' => 'csa', 'CsaV3_6G021500' => 'csa', 'CsaV3_6G048980' => 'csa', 'CSS0002511' => 'camsi', 'CSS0007556' => 'camsi', 'CSS0008532' => 'camsi', 'CSS0009709' => 'camsi', 'CSS0010486' => 'camsi', 'CSS0016768' => 'camsi', 'CSS0023512' => 'camsi', 'CSS0025341' => 'camsi', 'CSS0027999' => 'camsi', 'CSS0028944' => 'camsi', 'CSS0032292' => 'camsi', 'CSS0032464' => 'camsi', 'CSS0037153' => 'camsi', 'CSS0039256' => 'camsi', 'CSS0048392' => 'camsi', 'CSS0050458' => 'camsi', 'DCAR_004224' => 'dca', 'DCAR_006147' => 'dca', 'DCAR_006465' => 'dca', 'DCAR_008159' => 'dca', 'DCAR_012164' => 'dca', 'DCAR_019764' => 'dca', 'Dinv05418' => 'din', 'Dinv10839' => 'din', 'Dinv12521' => 'din', 'Dinv13900' => 'din', 'Dinv29426' => 'din', 'Duzib150G0263' => 'dzi', 'Duzib168G1178' => 'dzi', 'Duzib168G1924' => 'dzi', 'Duzib170G0299' => 'dzi', 'Duzib170G0813' => 'dzi', 'Duzib235G1128' => 'dzi', 'Duzib248G1060' => 'dzi', 'ECA232G1910' => 'eca', 'ECA233G4621' => 'eca', 'ECA238G1216' => 'eca', 'ECA238G1784' => 'eca', 'ECA248G1242' => 'eca', 'EL10Ac8g20071' => 'bvu', 'EL10Ac9g21086' => 'bvu', 'EL10Ac9g22407' => 'bvu', 'EL10Ac9g22412' => 'bvu', 'Eucgr.A01119' => 'egr', 'Eucgr.E04043' => 'egr', 'Eucgr.J00428' => 'egr', 'Eucgr.J00958' => 'egr', 'FAN11G3091' => 'fan', 'FAN11G3651' => 'fan', 'FAN16G2566' => 'fan', 'FAN21G3155' => 'fan', 'FAN21G3400' => 'fan', 'FAN21G3543' => 'fan', 'FAN25G0234' => 'fan', 'FAN25G1422' => 'fan', 'FAN25G3392' => 'fan', 'FvH4_3g01940' => 'fve', 'FvH4_3g29870' => 'fve', 'FvH4_3g33680' => 'fve', 'Glyma.09G004200' => 'gma', 'Glyma.11G151288' => 'gma', 'Glyma.11G189100' => 'gma', 'Glyma.12G072500' => 'gma', 'Glyma.12G085500' => 'gma', 'Glyma.12G181800' => 'gma', 'Glyma.12G193000' => 'gma', 'Glyma.13G309300' => 'gma', 'Glyma.13G319000' => 'gma', 'Glyma.17G012600' => 'gma', 'Gohir.A06G148600' => 'ghi', 'Gohir.A07G115800' => 'ghi', 'Gohir.A08G003600' => 'ghi', 'Gohir.A09G093300' => 'ghi', 'Gohir.A09G105400' => 'ghi', 'Gohir.A09G105500' => 'ghi', 'Gohir.D06G154600' => 'ghi', 'Gohir.D07G120200' => 'ghi', 'Gohir.D08G013900' => 'ghi', 'Gohir.D09G093100' => 'ghi', 'Gohir.D09G102200' => 'ghi', 'Gohir.D09G102300' => 'ghi', 'Gorai.001G129400' => 'gra', 'Gorai.004G008200' => 'gra', 'Gorai.006G109800' => 'gra', 'Gorai.006G119500' => 'gra', 'Gorai.006G121300' => 'gra', 'Gorai.010G180700' => 'gra', 'GSVIVG01012716001' => 'vvi', 'GSVIVG01025118001' => 'vvi', 'GSVIVG01030439001' => 'vvi', 'GSVIVG01031397001' => 'vvi', 'HanXRQChr01g0004201' => 'han', 'HanXRQChr02g0054941' => 'han', 'HanXRQChr05g0141811' => 'han', 'HanXRQChr07g0197751' => 'han', 'HanXRQChr11g0346691' => 'han', 'HanXRQChr13g0396971' => 'han', 'HanXRQChr14g0432951' => 'han', 'HanXRQChr14g0452001' => 'han', 'HanXRQChr15g0496681' => 'han', 'HanXRQChr17g0557491' => 'han', 'HanXRQChr17g0557501' => 'han', 'Haze_06809' => 'cav', 'Haze_12852' => 'cav', 'Haze_15850' => 'cav', 'Haze_23446' => 'cav', 'Haze_23942' => 'cav', 'Haze_23943' => 'cav', 'Hma1.2p1_0091F.1_g046450' => 'hma', 'Hma1.2p1_0128F.1_g059910' => 'hma', 'Hma1.2p1_0249F.1_g102260' => 'hma', 'Hma1.2p1_0453F.1_g156190' => 'hma', 'Hma1.2p1_0695F.1_g204380' => 'hma', 'Hma1.2p1_0749F.1_g212650' => 'hma', 'Hma1.2p1_2156F.1_g315420' => 'hma', 'Hma1.2p1_2686F.1_g326940' => 'hma', 'HPP92_006428' => 'vpl', 'HPP92_012069' => 'vpl', 'HPP92_014129' => 'vpl', 'HPP92_014133' => 'vpl', 'HPP92_017315' => 'vpl', 'HPP92_026445' => 'vpl', 'HPP92_026446' => 'vpl', 'Hund00774' => 'sun', 'Hund07682' => 'sun', 'Hund21413' => 'sun', 'Hund23462' => 'sun', 'Hund23463' => 'sun', 'Lalb_Chr03g0027911' => 'lal', 'Lalb_Chr13g0304271' => 'lal', 'Lalb_Chr19g0137471' => 'lal', 'Lalb_Chr22g0350651' => 'lal', 'Lalb_Chr24g0395151' => 'lal', 'Lj1A1231T40' => 'lonja', 'Lj1A221T48' => 'lonja', 'Lj1C924T12' => 'lonja', 'Lj2C993G6' => 'lonja', 'Lj3g0005790' => 'lja', 'Lj3g0015432' => 'lja', 'Lj3g0017722' => 'lja', 'Lj3g0018497' => 'lja', 'Lj4g0025071' => 'lja', 'Lsat_1_v5_gn_1_129680' => 'lsa', 'Lsat_1_v5_gn_2_25321' => 'lsa', 'Lsat_1_v5_gn_2_95461' => 'lsa', 'Lsat_1_v5_gn_4_159620' => 'lsa', 'Lsat_1_v5_gn_6_41301' => 'lsa', 'Lsat_1_v5_gn_6_74660' => 'lsa', 'Lsat_1_v5_gn_7_11520' => 'lsa', 'Lsat_1_v5_gn_9_67680' => 'lsa', 'Manes.04G008300' => 'mes', 'Manes.04G008400' => 'mes', 'Manes.04G026500' => 'mes', 'Manes.10G135300' => 'mes', 'Manes.11G157300' => 'mes', 'Manes.12G074000' => 'mes', 'Manes.16G006200' => 'mes', 'Manes.17G026400' => 'mes', 'Mapoly0024s0086' => 'mpo', 'Mapoly0024s0087' => 'mpo', 'Mapoly0071s0057' => 'mpo', 'Mapoly0204s0012' => 'mpo', 'MBI04_g37681_MAGBIO' => 'mbi', 'MBI05_g17779_MAGBIO' => 'mbi', 'MBI12_g31184_MAGBIO' => 'mbi', 'MBI17_g11083_MAGBIO' => 'mbi', 'MBI18_g03883_MAGBIO' => 'mbi', 'MBI18_g28940_MAGBIO' => 'mbi', 'MCO01G690' => 'mco', 'MD03G1109900' => 'mdo', 'MD03G1134800' => 'mdo', 'MD05G1348000' => 'mdo', 'MD10G1322400' => 'mdo', 'MD11G1123300' => 'mdo', 'MD11G1157600' => 'mdo', 'Medtr2g084875' => 'mtr', 'Medtr2g088130' => 'mtr', 'Medtr4g055310' => 'mtr', 'Medtr4g061070' => 'mtr', 'Medtr4g132250' => 'mtr', 'MELO3C004795.2' => 'cme', 'MELO3C004797.2' => 'cme', 'MELO3C007396.2' => 'cme', 'MELO3C019277.2' => 'cme', 'MELO3C021449.2' => 'cme', 'MELO3C025736.2' => 'cme', 'Migut.D02175' => 'egut', 'Migut.H01573' => 'egut', 'Migut.M01327' => 'egut', 'Migut.N02513' => 'egut', 'MSTRG.14638' => 'ama', 'MSTRG.18632' => 'ama', 'MSTRG.7203' => 'ama', 'Nitab4.5_0000533g0140' => 'nta', 'Nitab4.5_0000888g0150' => 'nta', 'Nitab4.5_0001453g0040' => 'nta', 'Nitab4.5_0002827g0090' => 'nta', 'Nitab4.5_0003082g0040' => 'nta', 'Nitab4.5_0007799g0040' => 'nta', 'Nitab4.5_0008983g0010' => 'nta', 'Nitab4.5_0009017g0020' => 'nta', 'Nn1g02132' => 'nnu', 'Nn1g03492' => 'nnu', 'Nn1g03493' => 'nnu', 'Nn1g03494' => 'nnu', 'Nn1g07164' => 'nnu', 'Nn1g07291' => 'nnu', 'Nn2g10655' => 'nnu', 'Nn2g11652' => 'nnu', 'Nn2g14008' => 'nnu', 'Nn3g17476' => 'nnu', 'Nn3g17477' => 'nnu', 'Nn4g22370' => 'nnu', 'Nn4g25255' => 'nnu', 'Nn5g27755' => 'nnu', 'Nn6g34260' => 'nnu', 'Nn6g35041' => 'nnu', 'Oeu005924.1' => 'oeu', 'Oeu008383.1' => 'oeu', 'Oeu014928.1' => 'oeu', 'Oeu019889.1' => 'oeu', 'Oeu022271.1' => 'oeu', 'Oeu025271.1' => 'oeu', 'Oeu036302.1' => 'oeu', 'Oeu044100.1' => 'oeu', 'Os01g0528300' => 'osa', 'Os03g0286200' => 'osa', 'Os04g0406600' => 'osa', 'Os07g0512000' => 'osa', 'Os07g0694600' => 'osa', 'Os08g0411000' => 'osa', 'Os09g0565700' => 'osa', 'Os09g0566050' => 'osa', 'Os10g0523700' => 'osa', 'Peaxi162Scf00002g00514' => 'pax', 'Peaxi162Scf00047g01817' => 'pax', 'Peaxi162Scf00114g00001' => 'pax', 'Peaxi162Scf00147g00613' => 'pax', 'Peaxi162Scf00389g00425' => 'pax', 'PGR042G1139' => 'pgr', 'PGR042G3273' => 'pgr', 'PGR102G2180' => 'pgr', 'PGR119G0234' => 'pgr', 'PGR119G0668' => 'pgr', 'PGSC0003DMG400007122' => 'stu', 'PGSC0003DMG400016478' => 'stu', 'PGSC0003DMG400025374' => 'stu', 'PGSC0003DMG400026536' => 'stu', 'Phvul.003G079600' => 'pvu', 'Phvul.005G115600' => 'pvu', 'Phvul.005G127100' => 'pvu', 'Phvul.006G149500' => 'pvu', 'Phvul.006G149600' => 'pvu', 'Phvul.011G071800' => 'pvu', 'Phvul.011G090400' => 'pvu', 'Potri.004G013400' => 'ptr', 'Potri.004G188100' => 'ptr', 'Potri.008G195500' => 'ptr', 'Potri.009G148800' => 'ptr', 'Potri.011G004700' => 'ptr', 'Pp3c17_22810' => 'ppa', 'Pp3c18_4480' => 'ppa', 'Pp3c19_13030' => 'ppa', 'Pp3c1_33620' => 'ppa', 'Pp3c2_9380' => 'ppa', 'PRCOL_00001023' => 'pco', 'Prupe.3G216300' => 'ppe', 'Prupe.4G019500' => 'ppe', 'Prupe.6G092500' => 'ppe', 'Prupe.6G119200' => 'ppe', 'Psat0s1945g0080' => 'psa', 'Psat0s4167g0040' => 'psa', 'Psat1g185800' => 'psa', 'Psat4g006440' => 'psa', 'Psat4g006480' => 'psa', 'Psat4g168120' => 'psa', 'Psat5g255680' => 'psa', 'Psat5g261760' => 'psa', 'Psat7g222120' => 'psa', 'PSO063G7252' => 'pso', 'PSO170G4778' => 'pso', 'PSO210G2249' => 'pso', 'PSO339G2411' => 'pso', 'PSO339G2457' => 'pso', 'PSO339G2854' => 'pso', 'PSO339G4288' => 'pso', 'PSO339G4615' => 'pso', 'PSO384G2796' => 'pso', 'PSO384G2940' => 'pso', 'PSO384G4227' => 'pso', 'PSO478G1425' => 'pso', 'PSO541G3863' => 'pso', 'PSO675G0507' => 'pso', 'PSO782G0338' => 'pso', 'PSO832G0644' => 'pso', 'QL01p013664' => 'qlo', 'QL01p036598' => 'qlo', 'QL05p072984' => 'qlo', 'QL08p005768' => 'qlo', 'QL08p032743' => 'qlo', 'QL93p0073_0439' => 'qlo', 'QL93p0073_0444' => 'qlo', 'RcHm_v2.0_Chr5g0002851' => 'rch', 'RcHm_v2.0_Chr5g0055201' => 'rch', 'RcHm_v2.0_Chr5g0061191' => 'rch', 'RcHm_v2.0_Chr7g0203231' => 'rch', 'Rhsim01G0208100' => 'rsi', 'Rhsim01G0208200' => 'rsi', 'Rhsim02G0106500' => 'rsi', 'Rhsim03G0107900' => 'rsi', 'Rhsim06G0163400' => 'rsi', 'Rhsim13G0105200' => 'rsi', 'Sabra04G0006300' => 'sbr', 'Sabra04G0127000' => 'sbr', 'Sabra08G0148700' => 'sbr', 'Sabra09G0117400' => 'sbr', 'SalBow1G3326' => 'sbo', 'SalBow3G3228' => 'sbo', 'SalBow6G1634' => 'sbo', 'SalBow6G3603' => 'sbo', 'SalBow6G5266' => 'sbo', 'SalBow7G2265' => 'sbo', 'SalBow8G0850' => 'sbo', 'SalBow8G2592' => 'sbo', 'Sc05g0009240' => 'sci', 'Sc12g0002300' => 'sci', 'Sc21g0000100' => 'sci', 'Sc21g0004720' => 'sci', 'Sed0002949' => 'sed', 'Sed0004114' => 'sed', 'Sed0004306' => 'sed', 'Sed0006172' => 'sed', 'Sed0008413' => 'sed', 'Sed0013809' => 'sed', 'Sed0019556' => 'sed', 'SEGI_03570' => 'sgi', 'SEGI_07859' => 'sgi', 'SEGI_15042' => 'sgi', 'SEGI_16263' => 'sgi', 'SEGI_16552' => 'sgi', 'SEGI_24331' => 'sgi', 'SEGI_27316' => 'sgi', 'SEGI_29521' => 'sgi', 'SEGI_41342' => 'sgi', 'SGA_v2.0_scaffold27G11617' => 'sas', 'SGA_v2.0_scaffold316G48428' => 'sas', 'SGA_v2.0_scaffold49G18261' => 'sas', 'SGA_v2.0_scaffold7G03831' => 'sas', 'SGA_v2.0_scaffold93G28359' => 'sas', 'SHI02210' => 'shi', 'SHI06028' => 'shi', 'SHI06321' => 'shi', 'SMO111G0012' => 'smo', 'SMO228G0080' => 'smo', 'SMO356G0756' => 'smo', 'Solyc02g080620.3' => 'sly', 'Solyc06g074530.1' => 'sly', 'Solyc11g066890.1' => 'sly', 'Solyc11g072520.3' => 'sly', 'Sopen02g025330' => 'spe', 'Sopen06g031000' => 'spe', 'Sopen09g008240' => 'spe', 'Sopen09g025210' => 'spe', 'Sopen11g026600' => 'spe', 'Sopen11g030170' => 'spe', 'Sp1g10420' => 'spa', 'Sp3g06570' => 'spa', 'Sp4g10660' => 'spa', 'Sp5g16460' => 'spa', 'Sp6g22710' => 'spa', 'TAR365G0112' => 'tar', 'TAR369G0717' => 'tar', 'TAR374G0976' => 'tar', 'TAR623G1128' => 'tar', 'TAR626G1937' => 'tar', 'TAR627G0123' => 'tar', 'TAR628G0305' => 'tar', 'TAR636G1176' => 'tar', 'TAR636G2442' => 'tar', 'THA.LOC104800556' => 'tha', 'THA.LOC104809501' => 'tha', 'THA.LOC104815126' => 'tha', 'THA.LOC104815732' => 'tha', 'THA.LOC104823528' => 'tha', 'Thecc.02G365600' => 'tca', 'Thecc.06G222300' => 'tca', 'Thecc.09G261800' => 'tca', 'Thecc.09G291400' => 'tca', 'Thhalv10003028m.g' => 'esa', 'Thhalv10007886m.g' => 'esa', 'Thhalv10016085m.g' => 'esa', 'Thhalv10016681m.g' => 'esa', 'Thhalv10020951m.g' => 'esa', 'TPR.G15598' => 'tpr', 'TPR.G29305' => 'tpr', 'TPR.G32395' => 'tpr', 'TPR.G36998' => 'tpr', 'TPR.G4227' => 'tpr', 'TWI18G1433' => 'twi', 'TWI31G0755' => 'twi', 'TWI38G0912' => 'twi', 'TWI75G1097' => 'twi', 'TWI75G1619' => 'twi', 'TWI79G1336' => 'twi', 'unitig_0.g943' => 'ugi', 'unitig_0.g944' => 'ugi', 'unitig_22.g6646' => 'ugi', 'unitig_37.g12681' => 'ugi', 'unitig_8.g3290' => 'ugi', 'vmacro03278' => 'vma', 'vmacro12197' => 'vma', 'vmacro14478' => 'vma', 'vmacro15787' => 'vma', 'vmacro15789' => 'vma', 'vmacro15790' => 'vma', 'vmacro15806' => 'vma', 'vmacro22907' => 'vma', 'vmacro22908' => 'vma', 'vmacro22909' => 'vma', 'vmacro23108' => 'vma', 'VMungo0540G0540' => 'vmu', 'VMungo0540G2468' => 'vmu', 'VMungo1080G0390' => 'vmu', 'VMungo1080G1165' => 'vmu', 'VMungo1127G0170' => 'vmu', 'VMungo1127G2099' => 'vmu', 'VMungo1215G3013' => 'vmu', 'Zm00001eb013110' => 'zma', 'Zm00001eb084260' => 'zma', 'Zm00001eb096110' => 'zma', 'Zm00001eb217510' => 'zma', 'Zm00001eb322550' => 'zma', 'Zm00001eb390770' => 'zma', 'Zm00001eb397170' => 'zma', 'Zm00001eb404610' => 'zma', 'Zm00001eb421790' => 'zma' ) $gf_id = 'HOM05D000911' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000911' ) $data_identifier = 'HOM05D000911' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 16, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 5, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 6, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 8, 'nnu' => (int) 16, 'oeu' => (int) 8, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 5, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 16, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421790' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000911', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27780' => 'bna', 'A03p35380' => 'bna', 'A04p21160' => 'bna', 'A05p40570' => 'bna', 'A06p26900' => 'bna', 'A08p33230' => 'bna', 'A09p65960' => 'bna', 'A10p18290' => 'bna', 'Aa31LG1G12990' => 'aar', 'Aa31LG1G2980' => 'aar', 'Aa31LG4G14320' => 'aar', 'Aa31LG7G11800' => 'aar', 'Aa31sc36G50' => 'aar', 'Aa31sc36G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3721' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5459' => 'aag', 'Actinidia03028' => 'ach', 'Actinidia03753' => 'ach', 'Actinidia04187' => 'ach', 'Actinidia05509' => 'ach', 'Actinidia24180' => 'ach', 'Actinidia26906' => 'ach', 'Actinidia37097' => 'ach', 'Actinidia38249' => 'ach', 'Ah.01g003470' => 'amhyb', 'Ah.01g004580' => 'amhyb', 'Ah.01g014850' => 'amhyb', 'Ah.01g016830' => 'amhyb', 'Ah.14g088000' => 'amhyb', 'AL1G22980' => 'aly', 'AL3G18990' => 'aly', 'AL4G22440' => 'aly', 'AL4G33180' => 'aly', 'AL5G22920' => 'aly', 'AL6G33660' => 'aly', 'AL8G20720' => 'aly', 'Aqoxy1G00935' => 'aox', 'Aqoxy1G02094' => 'aox', 'Aqoxy2G01239' => 'aox', 'Aqoxy4G01870' => 'aox', 'Aqoxy7G00450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.36ZVTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71EM27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5D6C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH3WRE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3NCM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RIM768' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YB5YRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z36GDV' => 'arhy', 'AT1G08250' => 'ath', 'AT1G11790' => 'ath', 'AT2G27820' => 'ath', 'AT3G07630' => 'ath', 'AT3G44720' => 'ath', 'AT5G22630' => 'ath', 'ATR0693G304' => 'atr', 'ATR0794G109' => 'atr', 'ATR0820G120' => 'atr', 'ATR1159G064' => 'atr', 'Atru.chr10.2239' => 'acertr', 'Atru.chr3.3371' => 'acertr', 'Atru.chr6.3202' => 'acertr', 'AUR62006499' => 'cqu', 'AUR62012718' => 'cqu', 'AUR62021938' => 'cqu', 'AUR62023932' => 'cqu', 'AUR62025034' => 'cqu', 'AUR62025035' => 'cqu', 'AUR62038307' => 'cqu', 'AUR62043466' => 'cqu', 'BcaB02g10748' => 'bca', 'BcaB03g13231' => 'bca', 'BcaB03g14689' => 'bca', 'BcaB05g22716' => 'bca', 'BcaB06g28172' => 'bca', 'BcaB08g36413' => 'bca', 'BcaC01g02186' => 'bca', 'BcaC01g04272' => 'bca', 'BcaC02g08080' => 'bca', 'BcaC02g08227' => 'bca', 'BcaC03g13901' => 'bca', 'BcaC04g19593' => 'bca', 'BcaC04g20874' => 'bca', 'BcaC05g29557' => 'bca', 'BcaC06g35505' => 'bca', 'BcaC07g41954' => 'bca', 'BcaC07g41955' => 'bca', 'BcaC07g41956' => 'bca', 'BcaC07g42519' => 'bca', 'BcaC07g42520' => 'bca', 'BcaC07g42523' => 'bca', 'BcaC07g42524' => 'bca', 'BcaC07g42525' => 'bca', 'BcaC08g47480' => 'bca', 'BcaC08g47481' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00530' => 'bna', 'BolC2t07178H' => 'bol', 'BolC3t16567H' => 'bol', 'BolC4t27234H' => 'bol', 'BolC5t29728H' => 'bol', 'BolC5t34622H' => 'bol', 'BolC6t40321H' => 'bol', 'BolC7t42028H' => 'bol', 'BolC8t49125H' => 'bol', 'BolC8t52538H' => 'bol', 'BolC8t52539H' => 'bol', 'BolC9t56681H' => 'bol', 'BolC9t58266H' => 'bol', 'BolSC21t60294H' => 'bol', 'BraA02t05670Z' => 'bra', 'BraA03t12716Z' => 'bra', 'BraA04t17685Z' => 'bra', 'BraA05t22788Z' => 'bra', 'BraA06t24032Z' => 'bra', 'BraA06t25625Z' => 'bra', 'BraA07t27930Z' => 'bra', 'BraA08t35242Z' => 'bra', 'BraA09t38609Z' => 'bra', 'BraA10t43905Z' => 'bra', 'C02p11060' => 'bna', 'C03p42990' => 'bna', 'C03p67310' => 'bna', 'C04p56990' => 'bna', 'C04p58660' => 'bna', 'C05p09890' => 'bna', 'C05p59680' => 'bna', 'C06p19830' => 'bna', 'C06p53040' => 'bna', 'C07p15230' => 'bna', 'C08p50070' => 'bna', 'C08p50090' => 'bna', 'C09p38330' => 'bna', 'C09p53940' => 'bna', 'CAN.G1014.1' => 'can', 'CAN.G644.30' => 'can', 'CAN.G84.47' => 'can', 'CAN.G919.8' => 'can', 'CANSAT54G0113' => 'cansat', 'CANSAT54G1286' => 'cansat', 'CANSAT64G1020' => 'cansat', 'CARHR008080' => 'chi', 'CARHR008090' => 'chi', 'CARHR012130' => 'chi', 'CARHR038390' => 'chi', 'CARHR082330' => 'chi', 'CARHR120520' => 'chi', 'CARHR151470' => 'chi', 'CARHR190950' => 'chi', 'Carub.0001s0760' => 'cru', 'Carub.0001s1146' => 'cru', 'Carub.0003s0721' => 'cru', 'Carub.0004s0858' => 'cru', 'Carub.0005s1040' => 'cru', 'Carub.0006s2035' => 'cru', 'Carub.0015s0005' => 'cru', 'Ca_01607_v3' => 'car', 'Ca_01677_v3' => 'car', 'Ca_06087_v3' => 'car', 'Ca_19238_v3' => 'car', 'Ca_19373_v3' => 'car', 'Ca_21079_v3' => 'car', 'CBR_g54016' => 'cbr', 'CBR_g54018' => 'cbr', 'CBR_g54020' => 'cbr', 'Cc01_g09780' => 'ccan', 'Cc01_g11680' => 'ccan', 'Cc02_g15610' => 'ccan', 'Cc05_g04350' => 'ccan', 'Cc09_g01580' => 'ccan', 'CDE01G0795' => 'cde', 'CDE02G2024' => 'cde', 'CDE02G2260' => 'cde', 'CDE02G4561' => 'cde', 'CDE05G2733' => 'cde', 'CDE05G3422' => 'cde', 'CDE06G2003' => 'cde', 'CDE08G0576' => 'cde', 'CDE09G0048' => 'cde', 'CDE11G0805' => 'cde', 'Cfa003644' => 'cfa', 'Cfa006290' => 'cfa', 'Cfa010080' => 'cfa', 'Cfa011376' => 'cfa', 'Cfa011576' => 'cfa', 'Cfa011577' => 'cfa', 'Cfa014389' => 'cfa', 'Ciclev10006044m.g' => 'ccl', 'Ciclev10006954m.g' => 'ccl', 'Ciclev10015131m.g' => 'ccl', 'Ciclev10015580m.g' => 'ccl', 'Ciclev10028359m.g' => 'ccl', 'Ciclev10028573m.g' => 'ccl', 'CiPaw.03G159300' => 'cil', 'CiPaw.04G115100' => 'cil', 'CiPaw.09G092800' => 'cil', 'CiPaw.10G071800' => 'cil', 'CiPaw.13G105800' => 'cil', 'CiPaw.13G141000' => 'cil', 'CiPaw.14G103400' => 'cil', 'ClCG01G012700' => 'cla', 'ClCG01G012720' => 'cla', 'ClCG01G021920' => 'cla', 'ClCG02G008870' => 'cla', 'ClCG02G020840' => 'cla', 'ClCG02G021930' => 'cla', 'COL.COLO4_19302' => 'col', 'COL.COLO4_25262' => 'col', 'COL.COLO4_31788' => 'col', 'Cpa.g.c34684' => 'cpa', 'Cpa.g.c36520.1' => 'cpa', 'Cpa.g.c45626' => 'cpa', 'Cpa.g.sc121.17' => 'cpa', 'Cpa.g.sc13.22' => 'cpa', 'Cpa.g.sc87.88' => 'cpa', 'Cre06.g261800' => 'cre', 'CsaV3_1G014500' => 'csa', 'CsaV3_1G014510' => 'csa', 'CsaV3_2G034880' => 'csa', 'CsaV3_6G014760' => 'csa', 'CsaV3_6G021500' => 'csa', 'CsaV3_6G048980' => 'csa', 'CSS0002511' => 'camsi', 'CSS0007556' => 'camsi', 'CSS0008532' => 'camsi', 'CSS0009709' => 'camsi', 'CSS0010486' => 'camsi', 'CSS0016768' => 'camsi', 'CSS0023512' => 'camsi', 'CSS0025341' => 'camsi', 'CSS0027999' => 'camsi', 'CSS0028944' => 'camsi', 'CSS0032292' => 'camsi', 'CSS0032464' => 'camsi', 'CSS0037153' => 'camsi', 'CSS0039256' => 'camsi', 'CSS0048392' => 'camsi', 'CSS0050458' => 'camsi', 'DCAR_004224' => 'dca', 'DCAR_006147' => 'dca', 'DCAR_006465' => 'dca', 'DCAR_008159' => 'dca', 'DCAR_012164' => 'dca', 'DCAR_019764' => 'dca', 'Dinv05418' => 'din', 'Dinv10839' => 'din', 'Dinv12521' => 'din', 'Dinv13900' => 'din', 'Dinv29426' => 'din', 'Duzib150G0263' => 'dzi', 'Duzib168G1178' => 'dzi', 'Duzib168G1924' => 'dzi', 'Duzib170G0299' => 'dzi', 'Duzib170G0813' => 'dzi', 'Duzib235G1128' => 'dzi', 'Duzib248G1060' => 'dzi', 'ECA232G1910' => 'eca', 'ECA233G4621' => 'eca', 'ECA238G1216' => 'eca', 'ECA238G1784' => 'eca', 'ECA248G1242' => 'eca', 'EL10Ac8g20071' => 'bvu', 'EL10Ac9g21086' => 'bvu', 'EL10Ac9g22407' => 'bvu', 'EL10Ac9g22412' => 'bvu', 'Eucgr.A01119' => 'egr', 'Eucgr.E04043' => 'egr', 'Eucgr.J00428' => 'egr', 'Eucgr.J00958' => 'egr', 'FAN11G3091' => 'fan', 'FAN11G3651' => 'fan', 'FAN16G2566' => 'fan', 'FAN21G3155' => 'fan', 'FAN21G3400' => 'fan', 'FAN21G3543' => 'fan', 'FAN25G0234' => 'fan', 'FAN25G1422' => 'fan', 'FAN25G3392' => 'fan', 'FvH4_3g01940' => 'fve', 'FvH4_3g29870' => 'fve', 'FvH4_3g33680' => 'fve', 'Glyma.09G004200' => 'gma', 'Glyma.11G151288' => 'gma', 'Glyma.11G189100' => 'gma', 'Glyma.12G072500' => 'gma', 'Glyma.12G085500' => 'gma', 'Glyma.12G181800' => 'gma', 'Glyma.12G193000' => 'gma', 'Glyma.13G309300' => 'gma', 'Glyma.13G319000' => 'gma', 'Glyma.17G012600' => 'gma', 'Gohir.A06G148600' => 'ghi', 'Gohir.A07G115800' => 'ghi', 'Gohir.A08G003600' => 'ghi', 'Gohir.A09G093300' => 'ghi', 'Gohir.A09G105400' => 'ghi', 'Gohir.A09G105500' => 'ghi', 'Gohir.D06G154600' => 'ghi', 'Gohir.D07G120200' => 'ghi', 'Gohir.D08G013900' => 'ghi', 'Gohir.D09G093100' => 'ghi', 'Gohir.D09G102200' => 'ghi', 'Gohir.D09G102300' => 'ghi', 'Gorai.001G129400' => 'gra', 'Gorai.004G008200' => 'gra', 'Gorai.006G109800' => 'gra', 'Gorai.006G119500' => 'gra', 'Gorai.006G121300' => 'gra', 'Gorai.010G180700' => 'gra', 'GSVIVG01012716001' => 'vvi', 'GSVIVG01025118001' => 'vvi', 'GSVIVG01030439001' => 'vvi', 'GSVIVG01031397001' => 'vvi', 'HanXRQChr01g0004201' => 'han', 'HanXRQChr02g0054941' => 'han', 'HanXRQChr05g0141811' => 'han', 'HanXRQChr07g0197751' => 'han', 'HanXRQChr11g0346691' => 'han', 'HanXRQChr13g0396971' => 'han', 'HanXRQChr14g0432951' => 'han', 'HanXRQChr14g0452001' => 'han', 'HanXRQChr15g0496681' => 'han', 'HanXRQChr17g0557491' => 'han', 'HanXRQChr17g0557501' => 'han', 'Haze_06809' => 'cav', 'Haze_12852' => 'cav', 'Haze_15850' => 'cav', 'Haze_23446' => 'cav', 'Haze_23942' => 'cav', 'Haze_23943' => 'cav', 'Hma1.2p1_0091F.1_g046450' => 'hma', 'Hma1.2p1_0128F.1_g059910' => 'hma', 'Hma1.2p1_0249F.1_g102260' => 'hma', 'Hma1.2p1_0453F.1_g156190' => 'hma', 'Hma1.2p1_0695F.1_g204380' => 'hma', 'Hma1.2p1_0749F.1_g212650' => 'hma', 'Hma1.2p1_2156F.1_g315420' => 'hma', 'Hma1.2p1_2686F.1_g326940' => 'hma', 'HPP92_006428' => 'vpl', 'HPP92_012069' => 'vpl', 'HPP92_014129' => 'vpl', 'HPP92_014133' => 'vpl', 'HPP92_017315' => 'vpl', 'HPP92_026445' => 'vpl', 'HPP92_026446' => 'vpl', 'Hund00774' => 'sun', 'Hund07682' => 'sun', 'Hund21413' => 'sun', 'Hund23462' => 'sun', 'Hund23463' => 'sun', 'Lalb_Chr03g0027911' => 'lal', 'Lalb_Chr13g0304271' => 'lal', 'Lalb_Chr19g0137471' => 'lal', 'Lalb_Chr22g0350651' => 'lal', 'Lalb_Chr24g0395151' => 'lal', 'Lj1A1231T40' => 'lonja', 'Lj1A221T48' => 'lonja', 'Lj1C924T12' => 'lonja', 'Lj2C993G6' => 'lonja', 'Lj3g0005790' => 'lja', 'Lj3g0015432' => 'lja', 'Lj3g0017722' => 'lja', 'Lj3g0018497' => 'lja', 'Lj4g0025071' => 'lja', 'Lsat_1_v5_gn_1_129680' => 'lsa', 'Lsat_1_v5_gn_2_25321' => 'lsa', 'Lsat_1_v5_gn_2_95461' => 'lsa', 'Lsat_1_v5_gn_4_159620' => 'lsa', 'Lsat_1_v5_gn_6_41301' => 'lsa', 'Lsat_1_v5_gn_6_74660' => 'lsa', 'Lsat_1_v5_gn_7_11520' => 'lsa', 'Lsat_1_v5_gn_9_67680' => 'lsa', 'Manes.04G008300' => 'mes', 'Manes.04G008400' => 'mes', 'Manes.04G026500' => 'mes', 'Manes.10G135300' => 'mes', 'Manes.11G157300' => 'mes', 'Manes.12G074000' => 'mes', 'Manes.16G006200' => 'mes', 'Manes.17G026400' => 'mes', 'Mapoly0024s0086' => 'mpo', 'Mapoly0024s0087' => 'mpo', 'Mapoly0071s0057' => 'mpo', 'Mapoly0204s0012' => 'mpo', 'MBI04_g37681_MAGBIO' => 'mbi', 'MBI05_g17779_MAGBIO' => 'mbi', 'MBI12_g31184_MAGBIO' => 'mbi', 'MBI17_g11083_MAGBIO' => 'mbi', 'MBI18_g03883_MAGBIO' => 'mbi', 'MBI18_g28940_MAGBIO' => 'mbi', 'MCO01G690' => 'mco', 'MD03G1109900' => 'mdo', 'MD03G1134800' => 'mdo', 'MD05G1348000' => 'mdo', 'MD10G1322400' => 'mdo', 'MD11G1123300' => 'mdo', 'MD11G1157600' => 'mdo', 'Medtr2g084875' => 'mtr', 'Medtr2g088130' => 'mtr', 'Medtr4g055310' => 'mtr', 'Medtr4g061070' => 'mtr', 'Medtr4g132250' => 'mtr', 'MELO3C004795.2' => 'cme', 'MELO3C004797.2' => 'cme', 'MELO3C007396.2' => 'cme', 'MELO3C019277.2' => 'cme', 'MELO3C021449.2' => 'cme', 'MELO3C025736.2' => 'cme', 'Migut.D02175' => 'egut', 'Migut.H01573' => 'egut', 'Migut.M01327' => 'egut', 'Migut.N02513' => 'egut', 'MSTRG.14638' => 'ama', 'MSTRG.18632' => 'ama', 'MSTRG.7203' => 'ama', 'Nitab4.5_0000533g0140' => 'nta', 'Nitab4.5_0000888g0150' => 'nta', 'Nitab4.5_0001453g0040' => 'nta', 'Nitab4.5_0002827g0090' => 'nta', 'Nitab4.5_0003082g0040' => 'nta', 'Nitab4.5_0007799g0040' => 'nta', 'Nitab4.5_0008983g0010' => 'nta', 'Nitab4.5_0009017g0020' => 'nta', 'Nn1g02132' => 'nnu', 'Nn1g03492' => 'nnu', 'Nn1g03493' => 'nnu', 'Nn1g03494' => 'nnu', 'Nn1g07164' => 'nnu', 'Nn1g07291' => 'nnu', 'Nn2g10655' => 'nnu', 'Nn2g11652' => 'nnu', 'Nn2g14008' => 'nnu', 'Nn3g17476' => 'nnu', 'Nn3g17477' => 'nnu', 'Nn4g22370' => 'nnu', 'Nn4g25255' => 'nnu', 'Nn5g27755' => 'nnu', 'Nn6g34260' => 'nnu', 'Nn6g35041' => 'nnu', 'Oeu005924.1' => 'oeu', 'Oeu008383.1' => 'oeu', 'Oeu014928.1' => 'oeu', 'Oeu019889.1' => 'oeu', 'Oeu022271.1' => 'oeu', 'Oeu025271.1' => 'oeu', 'Oeu036302.1' => 'oeu', 'Oeu044100.1' => 'oeu', 'Os01g0528300' => 'osa', 'Os03g0286200' => 'osa', 'Os04g0406600' => 'osa', 'Os07g0512000' => 'osa', 'Os07g0694600' => 'osa', 'Os08g0411000' => 'osa', 'Os09g0565700' => 'osa', 'Os09g0566050' => 'osa', 'Os10g0523700' => 'osa', 'Peaxi162Scf00002g00514' => 'pax', 'Peaxi162Scf00047g01817' => 'pax', 'Peaxi162Scf00114g00001' => 'pax', 'Peaxi162Scf00147g00613' => 'pax', 'Peaxi162Scf00389g00425' => 'pax', 'PGR042G1139' => 'pgr', 'PGR042G3273' => 'pgr', 'PGR102G2180' => 'pgr', 'PGR119G0234' => 'pgr', 'PGR119G0668' => 'pgr', 'PGSC0003DMG400007122' => 'stu', 'PGSC0003DMG400016478' => 'stu', 'PGSC0003DMG400025374' => 'stu', 'PGSC0003DMG400026536' => 'stu', 'Phvul.003G079600' => 'pvu', 'Phvul.005G115600' => 'pvu', 'Phvul.005G127100' => 'pvu', 'Phvul.006G149500' => 'pvu', 'Phvul.006G149600' => 'pvu', 'Phvul.011G071800' => 'pvu', 'Phvul.011G090400' => 'pvu', 'Potri.004G013400' => 'ptr', 'Potri.004G188100' => 'ptr', 'Potri.008G195500' => 'ptr', 'Potri.009G148800' => 'ptr', 'Potri.011G004700' => 'ptr', 'Pp3c17_22810' => 'ppa', 'Pp3c18_4480' => 'ppa', 'Pp3c19_13030' => 'ppa', 'Pp3c1_33620' => 'ppa', 'Pp3c2_9380' => 'ppa', 'PRCOL_00001023' => 'pco', 'Prupe.3G216300' => 'ppe', 'Prupe.4G019500' => 'ppe', 'Prupe.6G092500' => 'ppe', 'Prupe.6G119200' => 'ppe', 'Psat0s1945g0080' => 'psa', 'Psat0s4167g0040' => 'psa', 'Psat1g185800' => 'psa', 'Psat4g006440' => 'psa', 'Psat4g006480' => 'psa', 'Psat4g168120' => 'psa', 'Psat5g255680' => 'psa', 'Psat5g261760' => 'psa', 'Psat7g222120' => 'psa', 'PSO063G7252' => 'pso', 'PSO170G4778' => 'pso', 'PSO210G2249' => 'pso', 'PSO339G2411' => 'pso', 'PSO339G2457' => 'pso', 'PSO339G2854' => 'pso', 'PSO339G4288' => 'pso', 'PSO339G4615' => 'pso', 'PSO384G2796' => 'pso', 'PSO384G2940' => 'pso', 'PSO384G4227' => 'pso', 'PSO478G1425' => 'pso', 'PSO541G3863' => 'pso', 'PSO675G0507' => 'pso', 'PSO782G0338' => 'pso', 'PSO832G0644' => 'pso', 'QL01p013664' => 'qlo', 'QL01p036598' => 'qlo', 'QL05p072984' => 'qlo', 'QL08p005768' => 'qlo', 'QL08p032743' => 'qlo', 'QL93p0073_0439' => 'qlo', 'QL93p0073_0444' => 'qlo', 'RcHm_v2.0_Chr5g0002851' => 'rch', 'RcHm_v2.0_Chr5g0055201' => 'rch', 'RcHm_v2.0_Chr5g0061191' => 'rch', 'RcHm_v2.0_Chr7g0203231' => 'rch', 'Rhsim01G0208100' => 'rsi', 'Rhsim01G0208200' => 'rsi', 'Rhsim02G0106500' => 'rsi', 'Rhsim03G0107900' => 'rsi', 'Rhsim06G0163400' => 'rsi', 'Rhsim13G0105200' => 'rsi', 'Sabra04G0006300' => 'sbr', 'Sabra04G0127000' => 'sbr', 'Sabra08G0148700' => 'sbr', 'Sabra09G0117400' => 'sbr', 'SalBow1G3326' => 'sbo', 'SalBow3G3228' => 'sbo', 'SalBow6G1634' => 'sbo', 'SalBow6G3603' => 'sbo', 'SalBow6G5266' => 'sbo', 'SalBow7G2265' => 'sbo', 'SalBow8G0850' => 'sbo', 'SalBow8G2592' => 'sbo', 'Sc05g0009240' => 'sci', 'Sc12g0002300' => 'sci', 'Sc21g0000100' => 'sci', 'Sc21g0004720' => 'sci', 'Sed0002949' => 'sed', 'Sed0004114' => 'sed', 'Sed0004306' => 'sed', 'Sed0006172' => 'sed', 'Sed0008413' => 'sed', 'Sed0013809' => 'sed', 'Sed0019556' => 'sed', 'SEGI_03570' => 'sgi', 'SEGI_07859' => 'sgi', 'SEGI_15042' => 'sgi', 'SEGI_16263' => 'sgi', 'SEGI_16552' => 'sgi', 'SEGI_24331' => 'sgi', 'SEGI_27316' => 'sgi', 'SEGI_29521' => 'sgi', 'SEGI_41342' => 'sgi', 'SGA_v2.0_scaffold27G11617' => 'sas', 'SGA_v2.0_scaffold316G48428' => 'sas', 'SGA_v2.0_scaffold49G18261' => 'sas', 'SGA_v2.0_scaffold7G03831' => 'sas', 'SGA_v2.0_scaffold93G28359' => 'sas', 'SHI02210' => 'shi', 'SHI06028' => 'shi', 'SHI06321' => 'shi', 'SMO111G0012' => 'smo', 'SMO228G0080' => 'smo', 'SMO356G0756' => 'smo', 'Solyc02g080620.3' => 'sly', 'Solyc06g074530.1' => 'sly', 'Solyc11g066890.1' => 'sly', 'Solyc11g072520.3' => 'sly', 'Sopen02g025330' => 'spe', 'Sopen06g031000' => 'spe', 'Sopen09g008240' => 'spe', 'Sopen09g025210' => 'spe', 'Sopen11g026600' => 'spe', 'Sopen11g030170' => 'spe', 'Sp1g10420' => 'spa', 'Sp3g06570' => 'spa', 'Sp4g10660' => 'spa', 'Sp5g16460' => 'spa', 'Sp6g22710' => 'spa', 'TAR365G0112' => 'tar', 'TAR369G0717' => 'tar', 'TAR374G0976' => 'tar', 'TAR623G1128' => 'tar', 'TAR626G1937' => 'tar', 'TAR627G0123' => 'tar', 'TAR628G0305' => 'tar', 'TAR636G1176' => 'tar', 'TAR636G2442' => 'tar', 'THA.LOC104800556' => 'tha', 'THA.LOC104809501' => 'tha', 'THA.LOC104815126' => 'tha', 'THA.LOC104815732' => 'tha', 'THA.LOC104823528' => 'tha', 'Thecc.02G365600' => 'tca', 'Thecc.06G222300' => 'tca', 'Thecc.09G261800' => 'tca', 'Thecc.09G291400' => 'tca', 'Thhalv10003028m.g' => 'esa', 'Thhalv10007886m.g' => 'esa', 'Thhalv10016085m.g' => 'esa', 'Thhalv10016681m.g' => 'esa', 'Thhalv10020951m.g' => 'esa', 'TPR.G15598' => 'tpr', 'TPR.G29305' => 'tpr', 'TPR.G32395' => 'tpr', 'TPR.G36998' => 'tpr', 'TPR.G4227' => 'tpr', 'TWI18G1433' => 'twi', 'TWI31G0755' => 'twi', 'TWI38G0912' => 'twi', 'TWI75G1097' => 'twi', 'TWI75G1619' => 'twi', 'TWI79G1336' => 'twi', 'unitig_0.g943' => 'ugi', 'unitig_0.g944' => 'ugi', 'unitig_22.g6646' => 'ugi', 'unitig_37.g12681' => 'ugi', 'unitig_8.g3290' => 'ugi', 'vmacro03278' => 'vma', 'vmacro12197' => 'vma', 'vmacro14478' => 'vma', 'vmacro15787' => 'vma', 'vmacro15789' => 'vma', 'vmacro15790' => 'vma', 'vmacro15806' => 'vma', 'vmacro22907' => 'vma', 'vmacro22908' => 'vma', 'vmacro22909' => 'vma', 'vmacro23108' => 'vma', 'VMungo0540G0540' => 'vmu', 'VMungo0540G2468' => 'vmu', 'VMungo1080G0390' => 'vmu', 'VMungo1080G1165' => 'vmu', 'VMungo1127G0170' => 'vmu', 'VMungo1127G2099' => 'vmu', 'VMungo1215G3013' => 'vmu', 'Zm00001eb013110' => 'zma', 'Zm00001eb084260' => 'zma', 'Zm00001eb096110' => 'zma', 'Zm00001eb217510' => 'zma', 'Zm00001eb322550' => 'zma', 'Zm00001eb390770' => 'zma', 'Zm00001eb397170' => 'zma', 'Zm00001eb404610' => 'zma', 'Zm00001eb421790' => 'zma' ), 'gf_id' => 'HOM05D000911', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000911' ), 'data_identifier' => 'HOM05D000911', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000911', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27780' => 'bna', 'A03p35380' => 'bna', 'A04p21160' => 'bna', 'A05p40570' => 'bna', 'A06p26900' => 'bna', 'A08p33230' => 'bna', 'A09p65960' => 'bna', 'A10p18290' => 'bna', 'Aa31LG1G12990' => 'aar', 'Aa31LG1G2980' => 'aar', 'Aa31LG4G14320' => 'aar', 'Aa31LG7G11800' => 'aar', 'Aa31sc36G50' => 'aar', 'Aa31sc36G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3721' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5459' => 'aag', 'Actinidia03028' => 'ach', 'Actinidia03753' => 'ach', 'Actinidia04187' => 'ach', 'Actinidia05509' => 'ach', 'Actinidia24180' => 'ach', 'Actinidia26906' => 'ach', 'Actinidia37097' => 'ach', 'Actinidia38249' => 'ach', 'Ah.01g003470' => 'amhyb', 'Ah.01g004580' => 'amhyb', 'Ah.01g014850' => 'amhyb', 'Ah.01g016830' => 'amhyb', 'Ah.14g088000' => 'amhyb', 'AL1G22980' => 'aly', 'AL3G18990' => 'aly', 'AL4G22440' => 'aly', 'AL4G33180' => 'aly', 'AL5G22920' => 'aly', 'AL6G33660' => 'aly', 'AL8G20720' => 'aly', 'Aqoxy1G00935' => 'aox', 'Aqoxy1G02094' => 'aox', 'Aqoxy2G01239' => 'aox', 'Aqoxy4G01870' => 'aox', 'Aqoxy7G00450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.36ZVTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71EM27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5D6C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH3WRE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3NCM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RIM768' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YB5YRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z36GDV' => 'arhy', 'AT1G08250' => 'ath', 'AT1G11790' => 'ath', 'AT2G27820' => 'ath', 'AT3G07630' => 'ath', 'AT3G44720' => 'ath', 'AT5G22630' => 'ath', 'ATR0693G304' => 'atr', 'ATR0794G109' => 'atr', 'ATR0820G120' => 'atr', 'ATR1159G064' => 'atr', 'Atru.chr10.2239' => 'acertr', 'Atru.chr3.3371' => 'acertr', 'Atru.chr6.3202' => 'acertr', 'AUR62006499' => 'cqu', 'AUR62012718' => 'cqu', 'AUR62021938' => 'cqu', 'AUR62023932' => 'cqu', 'AUR62025034' => 'cqu', 'AUR62025035' => 'cqu', 'AUR62038307' => 'cqu', 'AUR62043466' => 'cqu', 'BcaB02g10748' => 'bca', 'BcaB03g13231' => 'bca', 'BcaB03g14689' => 'bca', 'BcaB05g22716' => 'bca', 'BcaB06g28172' => 'bca', 'BcaB08g36413' => 'bca', 'BcaC01g02186' => 'bca', 'BcaC01g04272' => 'bca', 'BcaC02g08080' => 'bca', 'BcaC02g08227' => 'bca', 'BcaC03g13901' => 'bca', 'BcaC04g19593' => 'bca', 'BcaC04g20874' => 'bca', 'BcaC05g29557' => 'bca', 'BcaC06g35505' => 'bca', 'BcaC07g41954' => 'bca', 'BcaC07g41955' => 'bca', 'BcaC07g41956' => 'bca', 'BcaC07g42519' => 'bca', 'BcaC07g42520' => 'bca', 'BcaC07g42523' => 'bca', 'BcaC07g42524' => 'bca', 'BcaC07g42525' => 'bca', 'BcaC08g47480' => 'bca', 'BcaC08g47481' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00530' => 'bna', 'BolC2t07178H' => 'bol', 'BolC3t16567H' => 'bol', 'BolC4t27234H' => 'bol', 'BolC5t29728H' => 'bol', 'BolC5t34622H' => 'bol', 'BolC6t40321H' => 'bol', 'BolC7t42028H' => 'bol', 'BolC8t49125H' => 'bol', 'BolC8t52538H' => 'bol', 'BolC8t52539H' => 'bol', 'BolC9t56681H' => 'bol', 'BolC9t58266H' => 'bol', 'BolSC21t60294H' => 'bol', 'BraA02t05670Z' => 'bra', 'BraA03t12716Z' => 'bra', 'BraA04t17685Z' => 'bra', 'BraA05t22788Z' => 'bra', 'BraA06t24032Z' => 'bra', 'BraA06t25625Z' => 'bra', 'BraA07t27930Z' => 'bra', 'BraA08t35242Z' => 'bra', 'BraA09t38609Z' => 'bra', 'BraA10t43905Z' => 'bra', 'C02p11060' => 'bna', 'C03p42990' => 'bna', 'C03p67310' => 'bna', 'C04p56990' => 'bna', 'C04p58660' => 'bna', 'C05p09890' => 'bna', 'C05p59680' => 'bna', 'C06p19830' => 'bna', 'C06p53040' => 'bna', 'C07p15230' => 'bna', 'C08p50070' => 'bna', 'C08p50090' => 'bna', 'C09p38330' => 'bna', 'C09p53940' => 'bna', 'CAN.G1014.1' => 'can', 'CAN.G644.30' => 'can', 'CAN.G84.47' => 'can', 'CAN.G919.8' => 'can', 'CANSAT54G0113' => 'cansat', 'CANSAT54G1286' => 'cansat', 'CANSAT64G1020' => 'cansat', 'CARHR008080' => 'chi', 'CARHR008090' => 'chi', 'CARHR012130' => 'chi', 'CARHR038390' => 'chi', 'CARHR082330' => 'chi', 'CARHR120520' => 'chi', 'CARHR151470' => 'chi', 'CARHR190950' => 'chi', 'Carub.0001s0760' => 'cru', 'Carub.0001s1146' => 'cru', 'Carub.0003s0721' => 'cru', 'Carub.0004s0858' => 'cru', 'Carub.0005s1040' => 'cru', 'Carub.0006s2035' => 'cru', 'Carub.0015s0005' => 'cru', 'Ca_01607_v3' => 'car', 'Ca_01677_v3' => 'car', 'Ca_06087_v3' => 'car', 'Ca_19238_v3' => 'car', 'Ca_19373_v3' => 'car', 'Ca_21079_v3' => 'car', 'CBR_g54016' => 'cbr', 'CBR_g54018' => 'cbr', 'CBR_g54020' => 'cbr', 'Cc01_g09780' => 'ccan', 'Cc01_g11680' => 'ccan', 'Cc02_g15610' => 'ccan', 'Cc05_g04350' => 'ccan', 'Cc09_g01580' => 'ccan', 'CDE01G0795' => 'cde', 'CDE02G2024' => 'cde', 'CDE02G2260' => 'cde', 'CDE02G4561' => 'cde', 'CDE05G2733' => 'cde', 'CDE05G3422' => 'cde', 'CDE06G2003' => 'cde', 'CDE08G0576' => 'cde', 'CDE09G0048' => 'cde', 'CDE11G0805' => 'cde', 'Cfa003644' => 'cfa', 'Cfa006290' => 'cfa', 'Cfa010080' => 'cfa', 'Cfa011376' => 'cfa', 'Cfa011576' => 'cfa', 'Cfa011577' => 'cfa', 'Cfa014389' => 'cfa', 'Ciclev10006044m.g' => 'ccl', 'Ciclev10006954m.g' => 'ccl', 'Ciclev10015131m.g' => 'ccl', 'Ciclev10015580m.g' => 'ccl', 'Ciclev10028359m.g' => 'ccl', 'Ciclev10028573m.g' => 'ccl', 'CiPaw.03G159300' => 'cil', 'CiPaw.04G115100' => 'cil', 'CiPaw.09G092800' => 'cil', 'CiPaw.10G071800' => 'cil', 'CiPaw.13G105800' => 'cil', 'CiPaw.13G141000' => 'cil', 'CiPaw.14G103400' => 'cil', 'ClCG01G012700' => 'cla', 'ClCG01G012720' => 'cla', 'ClCG01G021920' => 'cla', 'ClCG02G008870' => 'cla', 'ClCG02G020840' => 'cla', 'ClCG02G021930' => 'cla', 'COL.COLO4_19302' => 'col', 'COL.COLO4_25262' => 'col', 'COL.COLO4_31788' => 'col', 'Cpa.g.c34684' => 'cpa', 'Cpa.g.c36520.1' => 'cpa', 'Cpa.g.c45626' => 'cpa', 'Cpa.g.sc121.17' => 'cpa', 'Cpa.g.sc13.22' => 'cpa', 'Cpa.g.sc87.88' => 'cpa', 'Cre06.g261800' => 'cre', 'CsaV3_1G014500' => 'csa', 'CsaV3_1G014510' => 'csa', 'CsaV3_2G034880' => 'csa', 'CsaV3_6G014760' => 'csa', 'CsaV3_6G021500' => 'csa', 'CsaV3_6G048980' => 'csa', 'CSS0002511' => 'camsi', 'CSS0007556' => 'camsi', 'CSS0008532' => 'camsi', 'CSS0009709' => 'camsi', 'CSS0010486' => 'camsi', 'CSS0016768' => 'camsi', 'CSS0023512' => 'camsi', 'CSS0025341' => 'camsi', 'CSS0027999' => 'camsi', 'CSS0028944' => 'camsi', 'CSS0032292' => 'camsi', 'CSS0032464' => 'camsi', 'CSS0037153' => 'camsi', 'CSS0039256' => 'camsi', 'CSS0048392' => 'camsi', 'CSS0050458' => 'camsi', 'DCAR_004224' => 'dca', 'DCAR_006147' => 'dca', 'DCAR_006465' => 'dca', 'DCAR_008159' => 'dca', 'DCAR_012164' => 'dca', 'DCAR_019764' => 'dca', 'Dinv05418' => 'din', 'Dinv10839' => 'din', 'Dinv12521' => 'din', 'Dinv13900' => 'din', 'Dinv29426' => 'din', 'Duzib150G0263' => 'dzi', 'Duzib168G1178' => 'dzi', 'Duzib168G1924' => 'dzi', 'Duzib170G0299' => 'dzi', 'Duzib170G0813' => 'dzi', 'Duzib235G1128' => 'dzi', 'Duzib248G1060' => 'dzi', 'ECA232G1910' => 'eca', 'ECA233G4621' => 'eca', 'ECA238G1216' => 'eca', 'ECA238G1784' => 'eca', 'ECA248G1242' => 'eca', 'EL10Ac8g20071' => 'bvu', 'EL10Ac9g21086' => 'bvu', 'EL10Ac9g22407' => 'bvu', 'EL10Ac9g22412' => 'bvu', 'Eucgr.A01119' => 'egr', 'Eucgr.E04043' => 'egr', 'Eucgr.J00428' => 'egr', 'Eucgr.J00958' => 'egr', 'FAN11G3091' => 'fan', 'FAN11G3651' => 'fan', 'FAN16G2566' => 'fan', 'FAN21G3155' => 'fan', 'FAN21G3400' => 'fan', 'FAN21G3543' => 'fan', 'FAN25G0234' => 'fan', 'FAN25G1422' => 'fan', 'FAN25G3392' => 'fan', 'FvH4_3g01940' => 'fve', 'FvH4_3g29870' => 'fve', 'FvH4_3g33680' => 'fve', 'Glyma.09G004200' => 'gma', 'Glyma.11G151288' => 'gma', 'Glyma.11G189100' => 'gma', 'Glyma.12G072500' => 'gma', 'Glyma.12G085500' => 'gma', 'Glyma.12G181800' => 'gma', 'Glyma.12G193000' => 'gma', 'Glyma.13G309300' => 'gma', 'Glyma.13G319000' => 'gma', 'Glyma.17G012600' => 'gma', 'Gohir.A06G148600' => 'ghi', 'Gohir.A07G115800' => 'ghi', 'Gohir.A08G003600' => 'ghi', 'Gohir.A09G093300' => 'ghi', 'Gohir.A09G105400' => 'ghi', 'Gohir.A09G105500' => 'ghi', 'Gohir.D06G154600' => 'ghi', 'Gohir.D07G120200' => 'ghi', 'Gohir.D08G013900' => 'ghi', 'Gohir.D09G093100' => 'ghi', 'Gohir.D09G102200' => 'ghi', 'Gohir.D09G102300' => 'ghi', 'Gorai.001G129400' => 'gra', 'Gorai.004G008200' => 'gra', 'Gorai.006G109800' => 'gra', 'Gorai.006G119500' => 'gra', 'Gorai.006G121300' => 'gra', 'Gorai.010G180700' => 'gra', 'GSVIVG01012716001' => 'vvi', 'GSVIVG01025118001' => 'vvi', 'GSVIVG01030439001' => 'vvi', 'GSVIVG01031397001' => 'vvi', 'HanXRQChr01g0004201' => 'han', 'HanXRQChr02g0054941' => 'han', 'HanXRQChr05g0141811' => 'han', 'HanXRQChr07g0197751' => 'han', 'HanXRQChr11g0346691' => 'han', 'HanXRQChr13g0396971' => 'han', 'HanXRQChr14g0432951' => 'han', 'HanXRQChr14g0452001' => 'han', 'HanXRQChr15g0496681' => 'han', 'HanXRQChr17g0557491' => 'han', 'HanXRQChr17g0557501' => 'han', 'Haze_06809' => 'cav', 'Haze_12852' => 'cav', 'Haze_15850' => 'cav', 'Haze_23446' => 'cav', 'Haze_23942' => 'cav', 'Haze_23943' => 'cav', 'Hma1.2p1_0091F.1_g046450' => 'hma', 'Hma1.2p1_0128F.1_g059910' => 'hma', 'Hma1.2p1_0249F.1_g102260' => 'hma', 'Hma1.2p1_0453F.1_g156190' => 'hma', 'Hma1.2p1_0695F.1_g204380' => 'hma', 'Hma1.2p1_0749F.1_g212650' => 'hma', 'Hma1.2p1_2156F.1_g315420' => 'hma', 'Hma1.2p1_2686F.1_g326940' => 'hma', 'HPP92_006428' => 'vpl', 'HPP92_012069' => 'vpl', 'HPP92_014129' => 'vpl', 'HPP92_014133' => 'vpl', 'HPP92_017315' => 'vpl', 'HPP92_026445' => 'vpl', 'HPP92_026446' => 'vpl', 'Hund00774' => 'sun', 'Hund07682' => 'sun', 'Hund21413' => 'sun', 'Hund23462' => 'sun', 'Hund23463' => 'sun', 'Lalb_Chr03g0027911' => 'lal', 'Lalb_Chr13g0304271' => 'lal', 'Lalb_Chr19g0137471' => 'lal', 'Lalb_Chr22g0350651' => 'lal', 'Lalb_Chr24g0395151' => 'lal', 'Lj1A1231T40' => 'lonja', 'Lj1A221T48' => 'lonja', 'Lj1C924T12' => 'lonja', 'Lj2C993G6' => 'lonja', 'Lj3g0005790' => 'lja', 'Lj3g0015432' => 'lja', 'Lj3g0017722' => 'lja', 'Lj3g0018497' => 'lja', 'Lj4g0025071' => 'lja', 'Lsat_1_v5_gn_1_129680' => 'lsa', 'Lsat_1_v5_gn_2_25321' => 'lsa', 'Lsat_1_v5_gn_2_95461' => 'lsa', 'Lsat_1_v5_gn_4_159620' => 'lsa', 'Lsat_1_v5_gn_6_41301' => 'lsa', 'Lsat_1_v5_gn_6_74660' => 'lsa', 'Lsat_1_v5_gn_7_11520' => 'lsa', 'Lsat_1_v5_gn_9_67680' => 'lsa', 'Manes.04G008300' => 'mes', 'Manes.04G008400' => 'mes', 'Manes.04G026500' => 'mes', 'Manes.10G135300' => 'mes', 'Manes.11G157300' => 'mes', 'Manes.12G074000' => 'mes', 'Manes.16G006200' => 'mes', 'Manes.17G026400' => 'mes', 'Mapoly0024s0086' => 'mpo', 'Mapoly0024s0087' => 'mpo', 'Mapoly0071s0057' => 'mpo', 'Mapoly0204s0012' => 'mpo', 'MBI04_g37681_MAGBIO' => 'mbi', 'MBI05_g17779_MAGBIO' => 'mbi', 'MBI12_g31184_MAGBIO' => 'mbi', 'MBI17_g11083_MAGBIO' => 'mbi', 'MBI18_g03883_MAGBIO' => 'mbi', 'MBI18_g28940_MAGBIO' => 'mbi', 'MCO01G690' => 'mco', 'MD03G1109900' => 'mdo', 'MD03G1134800' => 'mdo', 'MD05G1348000' => 'mdo', 'MD10G1322400' => 'mdo', 'MD11G1123300' => 'mdo', 'MD11G1157600' => 'mdo', 'Medtr2g084875' => 'mtr', 'Medtr2g088130' => 'mtr', 'Medtr4g055310' => 'mtr', 'Medtr4g061070' => 'mtr', 'Medtr4g132250' => 'mtr', 'MELO3C004795.2' => 'cme', 'MELO3C004797.2' => 'cme', 'MELO3C007396.2' => 'cme', 'MELO3C019277.2' => 'cme', 'MELO3C021449.2' => 'cme', 'MELO3C025736.2' => 'cme', 'Migut.D02175' => 'egut', 'Migut.H01573' => 'egut', 'Migut.M01327' => 'egut', 'Migut.N02513' => 'egut', 'MSTRG.14638' => 'ama', 'MSTRG.18632' => 'ama', 'MSTRG.7203' => 'ama', 'Nitab4.5_0000533g0140' => 'nta', 'Nitab4.5_0000888g0150' => 'nta', 'Nitab4.5_0001453g0040' => 'nta', 'Nitab4.5_0002827g0090' => 'nta', 'Nitab4.5_0003082g0040' => 'nta', 'Nitab4.5_0007799g0040' => 'nta', 'Nitab4.5_0008983g0010' => 'nta', 'Nitab4.5_0009017g0020' => 'nta', 'Nn1g02132' => 'nnu', 'Nn1g03492' => 'nnu', 'Nn1g03493' => 'nnu', 'Nn1g03494' => 'nnu', 'Nn1g07164' => 'nnu', 'Nn1g07291' => 'nnu', 'Nn2g10655' => 'nnu', 'Nn2g11652' => 'nnu', 'Nn2g14008' => 'nnu', 'Nn3g17476' => 'nnu', 'Nn3g17477' => 'nnu', 'Nn4g22370' => 'nnu', 'Nn4g25255' => 'nnu', 'Nn5g27755' => 'nnu', 'Nn6g34260' => 'nnu', 'Nn6g35041' => 'nnu', 'Oeu005924.1' => 'oeu', 'Oeu008383.1' => 'oeu', 'Oeu014928.1' => 'oeu', 'Oeu019889.1' => 'oeu', 'Oeu022271.1' => 'oeu', 'Oeu025271.1' => 'oeu', 'Oeu036302.1' => 'oeu', 'Oeu044100.1' => 'oeu', 'Os01g0528300' => 'osa', 'Os03g0286200' => 'osa', 'Os04g0406600' => 'osa', 'Os07g0512000' => 'osa', 'Os07g0694600' => 'osa', 'Os08g0411000' => 'osa', 'Os09g0565700' => 'osa', 'Os09g0566050' => 'osa', 'Os10g0523700' => 'osa', 'Peaxi162Scf00002g00514' => 'pax', 'Peaxi162Scf00047g01817' => 'pax', 'Peaxi162Scf00114g00001' => 'pax', 'Peaxi162Scf00147g00613' => 'pax', 'Peaxi162Scf00389g00425' => 'pax', 'PGR042G1139' => 'pgr', 'PGR042G3273' => 'pgr', 'PGR102G2180' => 'pgr', 'PGR119G0234' => 'pgr', 'PGR119G0668' => 'pgr', 'PGSC0003DMG400007122' => 'stu', 'PGSC0003DMG400016478' => 'stu', 'PGSC0003DMG400025374' => 'stu', 'PGSC0003DMG400026536' => 'stu', 'Phvul.003G079600' => 'pvu', 'Phvul.005G115600' => 'pvu', 'Phvul.005G127100' => 'pvu', 'Phvul.006G149500' => 'pvu', 'Phvul.006G149600' => 'pvu', 'Phvul.011G071800' => 'pvu', 'Phvul.011G090400' => 'pvu', 'Potri.004G013400' => 'ptr', 'Potri.004G188100' => 'ptr', 'Potri.008G195500' => 'ptr', 'Potri.009G148800' => 'ptr', 'Potri.011G004700' => 'ptr', 'Pp3c17_22810' => 'ppa', 'Pp3c18_4480' => 'ppa', 'Pp3c19_13030' => 'ppa', 'Pp3c1_33620' => 'ppa', 'Pp3c2_9380' => 'ppa', 'PRCOL_00001023' => 'pco', 'Prupe.3G216300' => 'ppe', 'Prupe.4G019500' => 'ppe', 'Prupe.6G092500' => 'ppe', 'Prupe.6G119200' => 'ppe', 'Psat0s1945g0080' => 'psa', 'Psat0s4167g0040' => 'psa', 'Psat1g185800' => 'psa', 'Psat4g006440' => 'psa', 'Psat4g006480' => 'psa', 'Psat4g168120' => 'psa', 'Psat5g255680' => 'psa', 'Psat5g261760' => 'psa', 'Psat7g222120' => 'psa', 'PSO063G7252' => 'pso', 'PSO170G4778' => 'pso', 'PSO210G2249' => 'pso', 'PSO339G2411' => 'pso', 'PSO339G2457' => 'pso', 'PSO339G2854' => 'pso', 'PSO339G4288' => 'pso', 'PSO339G4615' => 'pso', 'PSO384G2796' => 'pso', 'PSO384G2940' => 'pso', 'PSO384G4227' => 'pso', 'PSO478G1425' => 'pso', 'PSO541G3863' => 'pso', 'PSO675G0507' => 'pso', 'PSO782G0338' => 'pso', 'PSO832G0644' => 'pso', 'QL01p013664' => 'qlo', 'QL01p036598' => 'qlo', 'QL05p072984' => 'qlo', 'QL08p005768' => 'qlo', 'QL08p032743' => 'qlo', 'QL93p0073_0439' => 'qlo', 'QL93p0073_0444' => 'qlo', 'RcHm_v2.0_Chr5g0002851' => 'rch', 'RcHm_v2.0_Chr5g0055201' => 'rch', 'RcHm_v2.0_Chr5g0061191' => 'rch', 'RcHm_v2.0_Chr7g0203231' => 'rch', 'Rhsim01G0208100' => 'rsi', 'Rhsim01G0208200' => 'rsi', 'Rhsim02G0106500' => 'rsi', 'Rhsim03G0107900' => 'rsi', 'Rhsim06G0163400' => 'rsi', 'Rhsim13G0105200' => 'rsi', 'Sabra04G0006300' => 'sbr', 'Sabra04G0127000' => 'sbr', 'Sabra08G0148700' => 'sbr', 'Sabra09G0117400' => 'sbr', 'SalBow1G3326' => 'sbo', 'SalBow3G3228' => 'sbo', 'SalBow6G1634' => 'sbo', 'SalBow6G3603' => 'sbo', 'SalBow6G5266' => 'sbo', 'SalBow7G2265' => 'sbo', 'SalBow8G0850' => 'sbo', 'SalBow8G2592' => 'sbo', 'Sc05g0009240' => 'sci', 'Sc12g0002300' => 'sci', 'Sc21g0000100' => 'sci', 'Sc21g0004720' => 'sci', 'Sed0002949' => 'sed', 'Sed0004114' => 'sed', 'Sed0004306' => 'sed', 'Sed0006172' => 'sed', 'Sed0008413' => 'sed', 'Sed0013809' => 'sed', 'Sed0019556' => 'sed', 'SEGI_03570' => 'sgi', 'SEGI_07859' => 'sgi', 'SEGI_15042' => 'sgi', 'SEGI_16263' => 'sgi', 'SEGI_16552' => 'sgi', 'SEGI_24331' => 'sgi', 'SEGI_27316' => 'sgi', 'SEGI_29521' => 'sgi', 'SEGI_41342' => 'sgi', 'SGA_v2.0_scaffold27G11617' => 'sas', 'SGA_v2.0_scaffold316G48428' => 'sas', 'SGA_v2.0_scaffold49G18261' => 'sas', 'SGA_v2.0_scaffold7G03831' => 'sas', 'SGA_v2.0_scaffold93G28359' => 'sas', 'SHI02210' => 'shi', 'SHI06028' => 'shi', 'SHI06321' => 'shi', 'SMO111G0012' => 'smo', 'SMO228G0080' => 'smo', 'SMO356G0756' => 'smo', 'Solyc02g080620.3' => 'sly', 'Solyc06g074530.1' => 'sly', 'Solyc11g066890.1' => 'sly', 'Solyc11g072520.3' => 'sly', 'Sopen02g025330' => 'spe', 'Sopen06g031000' => 'spe', 'Sopen09g008240' => 'spe', 'Sopen09g025210' => 'spe', 'Sopen11g026600' => 'spe', 'Sopen11g030170' => 'spe', 'Sp1g10420' => 'spa', 'Sp3g06570' => 'spa', 'Sp4g10660' => 'spa', 'Sp5g16460' => 'spa', 'Sp6g22710' => 'spa', 'TAR365G0112' => 'tar', 'TAR369G0717' => 'tar', 'TAR374G0976' => 'tar', 'TAR623G1128' => 'tar', 'TAR626G1937' => 'tar', 'TAR627G0123' => 'tar', 'TAR628G0305' => 'tar', 'TAR636G1176' => 'tar', 'TAR636G2442' => 'tar', 'THA.LOC104800556' => 'tha', 'THA.LOC104809501' => 'tha', 'THA.LOC104815126' => 'tha', 'THA.LOC104815732' => 'tha', 'THA.LOC104823528' => 'tha', 'Thecc.02G365600' => 'tca', 'Thecc.06G222300' => 'tca', 'Thecc.09G261800' => 'tca', 'Thecc.09G291400' => 'tca', 'Thhalv10003028m.g' => 'esa', 'Thhalv10007886m.g' => 'esa', 'Thhalv10016085m.g' => 'esa', 'Thhalv10016681m.g' => 'esa', 'Thhalv10020951m.g' => 'esa', 'TPR.G15598' => 'tpr', 'TPR.G29305' => 'tpr', 'TPR.G32395' => 'tpr', 'TPR.G36998' => 'tpr', 'TPR.G4227' => 'tpr', 'TWI18G1433' => 'twi', 'TWI31G0755' => 'twi', 'TWI38G0912' => 'twi', 'TWI75G1097' => 'twi', 'TWI75G1619' => 'twi', 'TWI79G1336' => 'twi', 'unitig_0.g943' => 'ugi', 'unitig_0.g944' => 'ugi', 'unitig_22.g6646' => 'ugi', 'unitig_37.g12681' => 'ugi', 'unitig_8.g3290' => 'ugi', 'vmacro03278' => 'vma', 'vmacro12197' => 'vma', 'vmacro14478' => 'vma', 'vmacro15787' => 'vma', 'vmacro15789' => 'vma', 'vmacro15790' => 'vma', 'vmacro15806' => 'vma', 'vmacro22907' => 'vma', 'vmacro22908' => 'vma', 'vmacro22909' => 'vma', 'vmacro23108' => 'vma', 'VMungo0540G0540' => 'vmu', 'VMungo0540G2468' => 'vmu', 'VMungo1080G0390' => 'vmu', 'VMungo1080G1165' => 'vmu', 'VMungo1127G0170' => 'vmu', 'VMungo1127G2099' => 'vmu', 'VMungo1215G3013' => 'vmu', 'Zm00001eb013110' => 'zma', 'Zm00001eb084260' => 'zma', 'Zm00001eb096110' => 'zma', 'Zm00001eb217510' => 'zma', 'Zm00001eb322550' => 'zma', 'Zm00001eb390770' => 'zma', 'Zm00001eb397170' => 'zma', 'Zm00001eb404610' => 'zma', 'Zm00001eb421790' => 'zma' ) $gf_id = 'HOM05D000911' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000911' ) $data_identifier = 'HOM05D000911' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 16, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 5, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 6, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 8, 'nnu' => (int) 16, 'oeu' => (int) 8, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 5, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 16, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421790' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000911', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27780' => 'bna', 'A03p35380' => 'bna', 'A04p21160' => 'bna', 'A05p40570' => 'bna', 'A06p26900' => 'bna', 'A08p33230' => 'bna', 'A09p65960' => 'bna', 'A10p18290' => 'bna', 'Aa31LG1G12990' => 'aar', 'Aa31LG1G2980' => 'aar', 'Aa31LG4G14320' => 'aar', 'Aa31LG7G11800' => 'aar', 'Aa31sc36G50' => 'aar', 'Aa31sc36G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3721' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5459' => 'aag', 'Actinidia03028' => 'ach', 'Actinidia03753' => 'ach', 'Actinidia04187' => 'ach', 'Actinidia05509' => 'ach', 'Actinidia24180' => 'ach', 'Actinidia26906' => 'ach', 'Actinidia37097' => 'ach', 'Actinidia38249' => 'ach', 'Ah.01g003470' => 'amhyb', 'Ah.01g004580' => 'amhyb', 'Ah.01g014850' => 'amhyb', 'Ah.01g016830' => 'amhyb', 'Ah.14g088000' => 'amhyb', 'AL1G22980' => 'aly', 'AL3G18990' => 'aly', 'AL4G22440' => 'aly', 'AL4G33180' => 'aly', 'AL5G22920' => 'aly', 'AL6G33660' => 'aly', 'AL8G20720' => 'aly', 'Aqoxy1G00935' => 'aox', 'Aqoxy1G02094' => 'aox', 'Aqoxy2G01239' => 'aox', 'Aqoxy4G01870' => 'aox', 'Aqoxy7G00450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.36ZVTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71EM27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5D6C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH3WRE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3NCM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RIM768' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YB5YRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z36GDV' => 'arhy', 'AT1G08250' => 'ath', 'AT1G11790' => 'ath', 'AT2G27820' => 'ath', 'AT3G07630' => 'ath', 'AT3G44720' => 'ath', 'AT5G22630' => 'ath', 'ATR0693G304' => 'atr', 'ATR0794G109' => 'atr', 'ATR0820G120' => 'atr', 'ATR1159G064' => 'atr', 'Atru.chr10.2239' => 'acertr', 'Atru.chr3.3371' => 'acertr', 'Atru.chr6.3202' => 'acertr', 'AUR62006499' => 'cqu', 'AUR62012718' => 'cqu', 'AUR62021938' => 'cqu', 'AUR62023932' => 'cqu', 'AUR62025034' => 'cqu', 'AUR62025035' => 'cqu', 'AUR62038307' => 'cqu', 'AUR62043466' => 'cqu', 'BcaB02g10748' => 'bca', 'BcaB03g13231' => 'bca', 'BcaB03g14689' => 'bca', 'BcaB05g22716' => 'bca', 'BcaB06g28172' => 'bca', 'BcaB08g36413' => 'bca', 'BcaC01g02186' => 'bca', 'BcaC01g04272' => 'bca', 'BcaC02g08080' => 'bca', 'BcaC02g08227' => 'bca', 'BcaC03g13901' => 'bca', 'BcaC04g19593' => 'bca', 'BcaC04g20874' => 'bca', 'BcaC05g29557' => 'bca', 'BcaC06g35505' => 'bca', 'BcaC07g41954' => 'bca', 'BcaC07g41955' => 'bca', 'BcaC07g41956' => 'bca', 'BcaC07g42519' => 'bca', 'BcaC07g42520' => 'bca', 'BcaC07g42523' => 'bca', 'BcaC07g42524' => 'bca', 'BcaC07g42525' => 'bca', 'BcaC08g47480' => 'bca', 'BcaC08g47481' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00530' => 'bna', 'BolC2t07178H' => 'bol', 'BolC3t16567H' => 'bol', 'BolC4t27234H' => 'bol', 'BolC5t29728H' => 'bol', 'BolC5t34622H' => 'bol', 'BolC6t40321H' => 'bol', 'BolC7t42028H' => 'bol', 'BolC8t49125H' => 'bol', 'BolC8t52538H' => 'bol', 'BolC8t52539H' => 'bol', 'BolC9t56681H' => 'bol', 'BolC9t58266H' => 'bol', 'BolSC21t60294H' => 'bol', 'BraA02t05670Z' => 'bra', 'BraA03t12716Z' => 'bra', 'BraA04t17685Z' => 'bra', 'BraA05t22788Z' => 'bra', 'BraA06t24032Z' => 'bra', 'BraA06t25625Z' => 'bra', 'BraA07t27930Z' => 'bra', 'BraA08t35242Z' => 'bra', 'BraA09t38609Z' => 'bra', 'BraA10t43905Z' => 'bra', 'C02p11060' => 'bna', 'C03p42990' => 'bna', 'C03p67310' => 'bna', 'C04p56990' => 'bna', 'C04p58660' => 'bna', 'C05p09890' => 'bna', 'C05p59680' => 'bna', 'C06p19830' => 'bna', 'C06p53040' => 'bna', 'C07p15230' => 'bna', 'C08p50070' => 'bna', 'C08p50090' => 'bna', 'C09p38330' => 'bna', 'C09p53940' => 'bna', 'CAN.G1014.1' => 'can', 'CAN.G644.30' => 'can', 'CAN.G84.47' => 'can', 'CAN.G919.8' => 'can', 'CANSAT54G0113' => 'cansat', 'CANSAT54G1286' => 'cansat', 'CANSAT64G1020' => 'cansat', 'CARHR008080' => 'chi', 'CARHR008090' => 'chi', 'CARHR012130' => 'chi', 'CARHR038390' => 'chi', 'CARHR082330' => 'chi', 'CARHR120520' => 'chi', 'CARHR151470' => 'chi', 'CARHR190950' => 'chi', 'Carub.0001s0760' => 'cru', 'Carub.0001s1146' => 'cru', 'Carub.0003s0721' => 'cru', 'Carub.0004s0858' => 'cru', 'Carub.0005s1040' => 'cru', 'Carub.0006s2035' => 'cru', 'Carub.0015s0005' => 'cru', 'Ca_01607_v3' => 'car', 'Ca_01677_v3' => 'car', 'Ca_06087_v3' => 'car', 'Ca_19238_v3' => 'car', 'Ca_19373_v3' => 'car', 'Ca_21079_v3' => 'car', 'CBR_g54016' => 'cbr', 'CBR_g54018' => 'cbr', 'CBR_g54020' => 'cbr', 'Cc01_g09780' => 'ccan', 'Cc01_g11680' => 'ccan', 'Cc02_g15610' => 'ccan', 'Cc05_g04350' => 'ccan', 'Cc09_g01580' => 'ccan', 'CDE01G0795' => 'cde', 'CDE02G2024' => 'cde', 'CDE02G2260' => 'cde', 'CDE02G4561' => 'cde', 'CDE05G2733' => 'cde', 'CDE05G3422' => 'cde', 'CDE06G2003' => 'cde', 'CDE08G0576' => 'cde', 'CDE09G0048' => 'cde', 'CDE11G0805' => 'cde', 'Cfa003644' => 'cfa', 'Cfa006290' => 'cfa', 'Cfa010080' => 'cfa', 'Cfa011376' => 'cfa', 'Cfa011576' => 'cfa', 'Cfa011577' => 'cfa', 'Cfa014389' => 'cfa', 'Ciclev10006044m.g' => 'ccl', 'Ciclev10006954m.g' => 'ccl', 'Ciclev10015131m.g' => 'ccl', 'Ciclev10015580m.g' => 'ccl', 'Ciclev10028359m.g' => 'ccl', 'Ciclev10028573m.g' => 'ccl', 'CiPaw.03G159300' => 'cil', 'CiPaw.04G115100' => 'cil', 'CiPaw.09G092800' => 'cil', 'CiPaw.10G071800' => 'cil', 'CiPaw.13G105800' => 'cil', 'CiPaw.13G141000' => 'cil', 'CiPaw.14G103400' => 'cil', 'ClCG01G012700' => 'cla', 'ClCG01G012720' => 'cla', 'ClCG01G021920' => 'cla', 'ClCG02G008870' => 'cla', 'ClCG02G020840' => 'cla', 'ClCG02G021930' => 'cla', 'COL.COLO4_19302' => 'col', 'COL.COLO4_25262' => 'col', 'COL.COLO4_31788' => 'col', 'Cpa.g.c34684' => 'cpa', 'Cpa.g.c36520.1' => 'cpa', 'Cpa.g.c45626' => 'cpa', 'Cpa.g.sc121.17' => 'cpa', 'Cpa.g.sc13.22' => 'cpa', 'Cpa.g.sc87.88' => 'cpa', 'Cre06.g261800' => 'cre', 'CsaV3_1G014500' => 'csa', 'CsaV3_1G014510' => 'csa', 'CsaV3_2G034880' => 'csa', 'CsaV3_6G014760' => 'csa', 'CsaV3_6G021500' => 'csa', 'CsaV3_6G048980' => 'csa', 'CSS0002511' => 'camsi', 'CSS0007556' => 'camsi', 'CSS0008532' => 'camsi', 'CSS0009709' => 'camsi', 'CSS0010486' => 'camsi', 'CSS0016768' => 'camsi', 'CSS0023512' => 'camsi', 'CSS0025341' => 'camsi', 'CSS0027999' => 'camsi', 'CSS0028944' => 'camsi', 'CSS0032292' => 'camsi', 'CSS0032464' => 'camsi', 'CSS0037153' => 'camsi', 'CSS0039256' => 'camsi', 'CSS0048392' => 'camsi', 'CSS0050458' => 'camsi', 'DCAR_004224' => 'dca', 'DCAR_006147' => 'dca', 'DCAR_006465' => 'dca', 'DCAR_008159' => 'dca', 'DCAR_012164' => 'dca', 'DCAR_019764' => 'dca', 'Dinv05418' => 'din', 'Dinv10839' => 'din', 'Dinv12521' => 'din', 'Dinv13900' => 'din', 'Dinv29426' => 'din', 'Duzib150G0263' => 'dzi', 'Duzib168G1178' => 'dzi', 'Duzib168G1924' => 'dzi', 'Duzib170G0299' => 'dzi', 'Duzib170G0813' => 'dzi', 'Duzib235G1128' => 'dzi', 'Duzib248G1060' => 'dzi', 'ECA232G1910' => 'eca', 'ECA233G4621' => 'eca', 'ECA238G1216' => 'eca', 'ECA238G1784' => 'eca', 'ECA248G1242' => 'eca', 'EL10Ac8g20071' => 'bvu', 'EL10Ac9g21086' => 'bvu', 'EL10Ac9g22407' => 'bvu', 'EL10Ac9g22412' => 'bvu', 'Eucgr.A01119' => 'egr', 'Eucgr.E04043' => 'egr', 'Eucgr.J00428' => 'egr', 'Eucgr.J00958' => 'egr', 'FAN11G3091' => 'fan', 'FAN11G3651' => 'fan', 'FAN16G2566' => 'fan', 'FAN21G3155' => 'fan', 'FAN21G3400' => 'fan', 'FAN21G3543' => 'fan', 'FAN25G0234' => 'fan', 'FAN25G1422' => 'fan', 'FAN25G3392' => 'fan', 'FvH4_3g01940' => 'fve', 'FvH4_3g29870' => 'fve', 'FvH4_3g33680' => 'fve', 'Glyma.09G004200' => 'gma', 'Glyma.11G151288' => 'gma', 'Glyma.11G189100' => 'gma', 'Glyma.12G072500' => 'gma', 'Glyma.12G085500' => 'gma', 'Glyma.12G181800' => 'gma', 'Glyma.12G193000' => 'gma', 'Glyma.13G309300' => 'gma', 'Glyma.13G319000' => 'gma', 'Glyma.17G012600' => 'gma', 'Gohir.A06G148600' => 'ghi', 'Gohir.A07G115800' => 'ghi', 'Gohir.A08G003600' => 'ghi', 'Gohir.A09G093300' => 'ghi', 'Gohir.A09G105400' => 'ghi', 'Gohir.A09G105500' => 'ghi', 'Gohir.D06G154600' => 'ghi', 'Gohir.D07G120200' => 'ghi', 'Gohir.D08G013900' => 'ghi', 'Gohir.D09G093100' => 'ghi', 'Gohir.D09G102200' => 'ghi', 'Gohir.D09G102300' => 'ghi', 'Gorai.001G129400' => 'gra', 'Gorai.004G008200' => 'gra', 'Gorai.006G109800' => 'gra', 'Gorai.006G119500' => 'gra', 'Gorai.006G121300' => 'gra', 'Gorai.010G180700' => 'gra', 'GSVIVG01012716001' => 'vvi', 'GSVIVG01025118001' => 'vvi', 'GSVIVG01030439001' => 'vvi', 'GSVIVG01031397001' => 'vvi', 'HanXRQChr01g0004201' => 'han', 'HanXRQChr02g0054941' => 'han', 'HanXRQChr05g0141811' => 'han', 'HanXRQChr07g0197751' => 'han', 'HanXRQChr11g0346691' => 'han', 'HanXRQChr13g0396971' => 'han', 'HanXRQChr14g0432951' => 'han', 'HanXRQChr14g0452001' => 'han', 'HanXRQChr15g0496681' => 'han', 'HanXRQChr17g0557491' => 'han', 'HanXRQChr17g0557501' => 'han', 'Haze_06809' => 'cav', 'Haze_12852' => 'cav', 'Haze_15850' => 'cav', 'Haze_23446' => 'cav', 'Haze_23942' => 'cav', 'Haze_23943' => 'cav', 'Hma1.2p1_0091F.1_g046450' => 'hma', 'Hma1.2p1_0128F.1_g059910' => 'hma', 'Hma1.2p1_0249F.1_g102260' => 'hma', 'Hma1.2p1_0453F.1_g156190' => 'hma', 'Hma1.2p1_0695F.1_g204380' => 'hma', 'Hma1.2p1_0749F.1_g212650' => 'hma', 'Hma1.2p1_2156F.1_g315420' => 'hma', 'Hma1.2p1_2686F.1_g326940' => 'hma', 'HPP92_006428' => 'vpl', 'HPP92_012069' => 'vpl', 'HPP92_014129' => 'vpl', 'HPP92_014133' => 'vpl', 'HPP92_017315' => 'vpl', 'HPP92_026445' => 'vpl', 'HPP92_026446' => 'vpl', 'Hund00774' => 'sun', 'Hund07682' => 'sun', 'Hund21413' => 'sun', 'Hund23462' => 'sun', 'Hund23463' => 'sun', 'Lalb_Chr03g0027911' => 'lal', 'Lalb_Chr13g0304271' => 'lal', 'Lalb_Chr19g0137471' => 'lal', 'Lalb_Chr22g0350651' => 'lal', 'Lalb_Chr24g0395151' => 'lal', 'Lj1A1231T40' => 'lonja', 'Lj1A221T48' => 'lonja', 'Lj1C924T12' => 'lonja', 'Lj2C993G6' => 'lonja', 'Lj3g0005790' => 'lja', 'Lj3g0015432' => 'lja', 'Lj3g0017722' => 'lja', 'Lj3g0018497' => 'lja', 'Lj4g0025071' => 'lja', 'Lsat_1_v5_gn_1_129680' => 'lsa', 'Lsat_1_v5_gn_2_25321' => 'lsa', 'Lsat_1_v5_gn_2_95461' => 'lsa', 'Lsat_1_v5_gn_4_159620' => 'lsa', 'Lsat_1_v5_gn_6_41301' => 'lsa', 'Lsat_1_v5_gn_6_74660' => 'lsa', 'Lsat_1_v5_gn_7_11520' => 'lsa', 'Lsat_1_v5_gn_9_67680' => 'lsa', 'Manes.04G008300' => 'mes', 'Manes.04G008400' => 'mes', 'Manes.04G026500' => 'mes', 'Manes.10G135300' => 'mes', 'Manes.11G157300' => 'mes', 'Manes.12G074000' => 'mes', 'Manes.16G006200' => 'mes', 'Manes.17G026400' => 'mes', 'Mapoly0024s0086' => 'mpo', 'Mapoly0024s0087' => 'mpo', 'Mapoly0071s0057' => 'mpo', 'Mapoly0204s0012' => 'mpo', 'MBI04_g37681_MAGBIO' => 'mbi', 'MBI05_g17779_MAGBIO' => 'mbi', 'MBI12_g31184_MAGBIO' => 'mbi', 'MBI17_g11083_MAGBIO' => 'mbi', 'MBI18_g03883_MAGBIO' => 'mbi', 'MBI18_g28940_MAGBIO' => 'mbi', 'MCO01G690' => 'mco', 'MD03G1109900' => 'mdo', 'MD03G1134800' => 'mdo', 'MD05G1348000' => 'mdo', 'MD10G1322400' => 'mdo', 'MD11G1123300' => 'mdo', 'MD11G1157600' => 'mdo', 'Medtr2g084875' => 'mtr', 'Medtr2g088130' => 'mtr', 'Medtr4g055310' => 'mtr', 'Medtr4g061070' => 'mtr', 'Medtr4g132250' => 'mtr', 'MELO3C004795.2' => 'cme', 'MELO3C004797.2' => 'cme', 'MELO3C007396.2' => 'cme', 'MELO3C019277.2' => 'cme', 'MELO3C021449.2' => 'cme', 'MELO3C025736.2' => 'cme', 'Migut.D02175' => 'egut', 'Migut.H01573' => 'egut', 'Migut.M01327' => 'egut', 'Migut.N02513' => 'egut', 'MSTRG.14638' => 'ama', 'MSTRG.18632' => 'ama', 'MSTRG.7203' => 'ama', 'Nitab4.5_0000533g0140' => 'nta', 'Nitab4.5_0000888g0150' => 'nta', 'Nitab4.5_0001453g0040' => 'nta', 'Nitab4.5_0002827g0090' => 'nta', 'Nitab4.5_0003082g0040' => 'nta', 'Nitab4.5_0007799g0040' => 'nta', 'Nitab4.5_0008983g0010' => 'nta', 'Nitab4.5_0009017g0020' => 'nta', 'Nn1g02132' => 'nnu', 'Nn1g03492' => 'nnu', 'Nn1g03493' => 'nnu', 'Nn1g03494' => 'nnu', 'Nn1g07164' => 'nnu', 'Nn1g07291' => 'nnu', 'Nn2g10655' => 'nnu', 'Nn2g11652' => 'nnu', 'Nn2g14008' => 'nnu', 'Nn3g17476' => 'nnu', 'Nn3g17477' => 'nnu', 'Nn4g22370' => 'nnu', 'Nn4g25255' => 'nnu', 'Nn5g27755' => 'nnu', 'Nn6g34260' => 'nnu', 'Nn6g35041' => 'nnu', 'Oeu005924.1' => 'oeu', 'Oeu008383.1' => 'oeu', 'Oeu014928.1' => 'oeu', 'Oeu019889.1' => 'oeu', 'Oeu022271.1' => 'oeu', 'Oeu025271.1' => 'oeu', 'Oeu036302.1' => 'oeu', 'Oeu044100.1' => 'oeu', 'Os01g0528300' => 'osa', 'Os03g0286200' => 'osa', 'Os04g0406600' => 'osa', 'Os07g0512000' => 'osa', 'Os07g0694600' => 'osa', 'Os08g0411000' => 'osa', 'Os09g0565700' => 'osa', 'Os09g0566050' => 'osa', 'Os10g0523700' => 'osa', 'Peaxi162Scf00002g00514' => 'pax', 'Peaxi162Scf00047g01817' => 'pax', 'Peaxi162Scf00114g00001' => 'pax', 'Peaxi162Scf00147g00613' => 'pax', 'Peaxi162Scf00389g00425' => 'pax', 'PGR042G1139' => 'pgr', 'PGR042G3273' => 'pgr', 'PGR102G2180' => 'pgr', 'PGR119G0234' => 'pgr', 'PGR119G0668' => 'pgr', 'PGSC0003DMG400007122' => 'stu', 'PGSC0003DMG400016478' => 'stu', 'PGSC0003DMG400025374' => 'stu', 'PGSC0003DMG400026536' => 'stu', 'Phvul.003G079600' => 'pvu', 'Phvul.005G115600' => 'pvu', 'Phvul.005G127100' => 'pvu', 'Phvul.006G149500' => 'pvu', 'Phvul.006G149600' => 'pvu', 'Phvul.011G071800' => 'pvu', 'Phvul.011G090400' => 'pvu', 'Potri.004G013400' => 'ptr', 'Potri.004G188100' => 'ptr', 'Potri.008G195500' => 'ptr', 'Potri.009G148800' => 'ptr', 'Potri.011G004700' => 'ptr', 'Pp3c17_22810' => 'ppa', 'Pp3c18_4480' => 'ppa', 'Pp3c19_13030' => 'ppa', 'Pp3c1_33620' => 'ppa', 'Pp3c2_9380' => 'ppa', 'PRCOL_00001023' => 'pco', 'Prupe.3G216300' => 'ppe', 'Prupe.4G019500' => 'ppe', 'Prupe.6G092500' => 'ppe', 'Prupe.6G119200' => 'ppe', 'Psat0s1945g0080' => 'psa', 'Psat0s4167g0040' => 'psa', 'Psat1g185800' => 'psa', 'Psat4g006440' => 'psa', 'Psat4g006480' => 'psa', 'Psat4g168120' => 'psa', 'Psat5g255680' => 'psa', 'Psat5g261760' => 'psa', 'Psat7g222120' => 'psa', 'PSO063G7252' => 'pso', 'PSO170G4778' => 'pso', 'PSO210G2249' => 'pso', 'PSO339G2411' => 'pso', 'PSO339G2457' => 'pso', 'PSO339G2854' => 'pso', 'PSO339G4288' => 'pso', 'PSO339G4615' => 'pso', 'PSO384G2796' => 'pso', 'PSO384G2940' => 'pso', 'PSO384G4227' => 'pso', 'PSO478G1425' => 'pso', 'PSO541G3863' => 'pso', 'PSO675G0507' => 'pso', 'PSO782G0338' => 'pso', 'PSO832G0644' => 'pso', 'QL01p013664' => 'qlo', 'QL01p036598' => 'qlo', 'QL05p072984' => 'qlo', 'QL08p005768' => 'qlo', 'QL08p032743' => 'qlo', 'QL93p0073_0439' => 'qlo', 'QL93p0073_0444' => 'qlo', 'RcHm_v2.0_Chr5g0002851' => 'rch', 'RcHm_v2.0_Chr5g0055201' => 'rch', 'RcHm_v2.0_Chr5g0061191' => 'rch', 'RcHm_v2.0_Chr7g0203231' => 'rch', 'Rhsim01G0208100' => 'rsi', 'Rhsim01G0208200' => 'rsi', 'Rhsim02G0106500' => 'rsi', 'Rhsim03G0107900' => 'rsi', 'Rhsim06G0163400' => 'rsi', 'Rhsim13G0105200' => 'rsi', 'Sabra04G0006300' => 'sbr', 'Sabra04G0127000' => 'sbr', 'Sabra08G0148700' => 'sbr', 'Sabra09G0117400' => 'sbr', 'SalBow1G3326' => 'sbo', 'SalBow3G3228' => 'sbo', 'SalBow6G1634' => 'sbo', 'SalBow6G3603' => 'sbo', 'SalBow6G5266' => 'sbo', 'SalBow7G2265' => 'sbo', 'SalBow8G0850' => 'sbo', 'SalBow8G2592' => 'sbo', 'Sc05g0009240' => 'sci', 'Sc12g0002300' => 'sci', 'Sc21g0000100' => 'sci', 'Sc21g0004720' => 'sci', 'Sed0002949' => 'sed', 'Sed0004114' => 'sed', 'Sed0004306' => 'sed', 'Sed0006172' => 'sed', 'Sed0008413' => 'sed', 'Sed0013809' => 'sed', 'Sed0019556' => 'sed', 'SEGI_03570' => 'sgi', 'SEGI_07859' => 'sgi', 'SEGI_15042' => 'sgi', 'SEGI_16263' => 'sgi', 'SEGI_16552' => 'sgi', 'SEGI_24331' => 'sgi', 'SEGI_27316' => 'sgi', 'SEGI_29521' => 'sgi', 'SEGI_41342' => 'sgi', 'SGA_v2.0_scaffold27G11617' => 'sas', 'SGA_v2.0_scaffold316G48428' => 'sas', 'SGA_v2.0_scaffold49G18261' => 'sas', 'SGA_v2.0_scaffold7G03831' => 'sas', 'SGA_v2.0_scaffold93G28359' => 'sas', 'SHI02210' => 'shi', 'SHI06028' => 'shi', 'SHI06321' => 'shi', 'SMO111G0012' => 'smo', 'SMO228G0080' => 'smo', 'SMO356G0756' => 'smo', 'Solyc02g080620.3' => 'sly', 'Solyc06g074530.1' => 'sly', 'Solyc11g066890.1' => 'sly', 'Solyc11g072520.3' => 'sly', 'Sopen02g025330' => 'spe', 'Sopen06g031000' => 'spe', 'Sopen09g008240' => 'spe', 'Sopen09g025210' => 'spe', 'Sopen11g026600' => 'spe', 'Sopen11g030170' => 'spe', 'Sp1g10420' => 'spa', 'Sp3g06570' => 'spa', 'Sp4g10660' => 'spa', 'Sp5g16460' => 'spa', 'Sp6g22710' => 'spa', 'TAR365G0112' => 'tar', 'TAR369G0717' => 'tar', 'TAR374G0976' => 'tar', 'TAR623G1128' => 'tar', 'TAR626G1937' => 'tar', 'TAR627G0123' => 'tar', 'TAR628G0305' => 'tar', 'TAR636G1176' => 'tar', 'TAR636G2442' => 'tar', 'THA.LOC104800556' => 'tha', 'THA.LOC104809501' => 'tha', 'THA.LOC104815126' => 'tha', 'THA.LOC104815732' => 'tha', 'THA.LOC104823528' => 'tha', 'Thecc.02G365600' => 'tca', 'Thecc.06G222300' => 'tca', 'Thecc.09G261800' => 'tca', 'Thecc.09G291400' => 'tca', 'Thhalv10003028m.g' => 'esa', 'Thhalv10007886m.g' => 'esa', 'Thhalv10016085m.g' => 'esa', 'Thhalv10016681m.g' => 'esa', 'Thhalv10020951m.g' => 'esa', 'TPR.G15598' => 'tpr', 'TPR.G29305' => 'tpr', 'TPR.G32395' => 'tpr', 'TPR.G36998' => 'tpr', 'TPR.G4227' => 'tpr', 'TWI18G1433' => 'twi', 'TWI31G0755' => 'twi', 'TWI38G0912' => 'twi', 'TWI75G1097' => 'twi', 'TWI75G1619' => 'twi', 'TWI79G1336' => 'twi', 'unitig_0.g943' => 'ugi', 'unitig_0.g944' => 'ugi', 'unitig_22.g6646' => 'ugi', 'unitig_37.g12681' => 'ugi', 'unitig_8.g3290' => 'ugi', 'vmacro03278' => 'vma', 'vmacro12197' => 'vma', 'vmacro14478' => 'vma', 'vmacro15787' => 'vma', 'vmacro15789' => 'vma', 'vmacro15790' => 'vma', 'vmacro15806' => 'vma', 'vmacro22907' => 'vma', 'vmacro22908' => 'vma', 'vmacro22909' => 'vma', 'vmacro23108' => 'vma', 'VMungo0540G0540' => 'vmu', 'VMungo0540G2468' => 'vmu', 'VMungo1080G0390' => 'vmu', 'VMungo1080G1165' => 'vmu', 'VMungo1127G0170' => 'vmu', 'VMungo1127G2099' => 'vmu', 'VMungo1215G3013' => 'vmu', 'Zm00001eb013110' => 'zma', 'Zm00001eb084260' => 'zma', 'Zm00001eb096110' => 'zma', 'Zm00001eb217510' => 'zma', 'Zm00001eb322550' => 'zma', 'Zm00001eb390770' => 'zma', 'Zm00001eb397170' => 'zma', 'Zm00001eb404610' => 'zma', 'Zm00001eb421790' => 'zma' ), 'gf_id' => 'HOM05D000911', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000911' ), 'data_identifier' => 'HOM05D000911', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000911', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27780' => 'bna', 'A03p35380' => 'bna', 'A04p21160' => 'bna', 'A05p40570' => 'bna', 'A06p26900' => 'bna', 'A08p33230' => 'bna', 'A09p65960' => 'bna', 'A10p18290' => 'bna', 'Aa31LG1G12990' => 'aar', 'Aa31LG1G2980' => 'aar', 'Aa31LG4G14320' => 'aar', 'Aa31LG7G11800' => 'aar', 'Aa31sc36G50' => 'aar', 'Aa31sc36G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3721' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5459' => 'aag', 'Actinidia03028' => 'ach', 'Actinidia03753' => 'ach', 'Actinidia04187' => 'ach', 'Actinidia05509' => 'ach', 'Actinidia24180' => 'ach', 'Actinidia26906' => 'ach', 'Actinidia37097' => 'ach', 'Actinidia38249' => 'ach', 'Ah.01g003470' => 'amhyb', 'Ah.01g004580' => 'amhyb', 'Ah.01g014850' => 'amhyb', 'Ah.01g016830' => 'amhyb', 'Ah.14g088000' => 'amhyb', 'AL1G22980' => 'aly', 'AL3G18990' => 'aly', 'AL4G22440' => 'aly', 'AL4G33180' => 'aly', 'AL5G22920' => 'aly', 'AL6G33660' => 'aly', 'AL8G20720' => 'aly', 'Aqoxy1G00935' => 'aox', 'Aqoxy1G02094' => 'aox', 'Aqoxy2G01239' => 'aox', 'Aqoxy4G01870' => 'aox', 'Aqoxy7G00450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.36ZVTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71EM27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5D6C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH3WRE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3NCM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RIM768' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YB5YRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z36GDV' => 'arhy', 'AT1G08250' => 'ath', 'AT1G11790' => 'ath', 'AT2G27820' => 'ath', 'AT3G07630' => 'ath', 'AT3G44720' => 'ath', 'AT5G22630' => 'ath', 'ATR0693G304' => 'atr', 'ATR0794G109' => 'atr', 'ATR0820G120' => 'atr', 'ATR1159G064' => 'atr', 'Atru.chr10.2239' => 'acertr', 'Atru.chr3.3371' => 'acertr', 'Atru.chr6.3202' => 'acertr', 'AUR62006499' => 'cqu', 'AUR62012718' => 'cqu', 'AUR62021938' => 'cqu', 'AUR62023932' => 'cqu', 'AUR62025034' => 'cqu', 'AUR62025035' => 'cqu', 'AUR62038307' => 'cqu', 'AUR62043466' => 'cqu', 'BcaB02g10748' => 'bca', 'BcaB03g13231' => 'bca', 'BcaB03g14689' => 'bca', 'BcaB05g22716' => 'bca', 'BcaB06g28172' => 'bca', 'BcaB08g36413' => 'bca', 'BcaC01g02186' => 'bca', 'BcaC01g04272' => 'bca', 'BcaC02g08080' => 'bca', 'BcaC02g08227' => 'bca', 'BcaC03g13901' => 'bca', 'BcaC04g19593' => 'bca', 'BcaC04g20874' => 'bca', 'BcaC05g29557' => 'bca', 'BcaC06g35505' => 'bca', 'BcaC07g41954' => 'bca', 'BcaC07g41955' => 'bca', 'BcaC07g41956' => 'bca', 'BcaC07g42519' => 'bca', 'BcaC07g42520' => 'bca', 'BcaC07g42523' => 'bca', 'BcaC07g42524' => 'bca', 'BcaC07g42525' => 'bca', 'BcaC08g47480' => 'bca', 'BcaC08g47481' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00530' => 'bna', 'BolC2t07178H' => 'bol', 'BolC3t16567H' => 'bol', 'BolC4t27234H' => 'bol', 'BolC5t29728H' => 'bol', 'BolC5t34622H' => 'bol', 'BolC6t40321H' => 'bol', 'BolC7t42028H' => 'bol', 'BolC8t49125H' => 'bol', 'BolC8t52538H' => 'bol', 'BolC8t52539H' => 'bol', 'BolC9t56681H' => 'bol', 'BolC9t58266H' => 'bol', 'BolSC21t60294H' => 'bol', 'BraA02t05670Z' => 'bra', 'BraA03t12716Z' => 'bra', 'BraA04t17685Z' => 'bra', 'BraA05t22788Z' => 'bra', 'BraA06t24032Z' => 'bra', 'BraA06t25625Z' => 'bra', 'BraA07t27930Z' => 'bra', 'BraA08t35242Z' => 'bra', 'BraA09t38609Z' => 'bra', 'BraA10t43905Z' => 'bra', 'C02p11060' => 'bna', 'C03p42990' => 'bna', 'C03p67310' => 'bna', 'C04p56990' => 'bna', 'C04p58660' => 'bna', 'C05p09890' => 'bna', 'C05p59680' => 'bna', 'C06p19830' => 'bna', 'C06p53040' => 'bna', 'C07p15230' => 'bna', 'C08p50070' => 'bna', 'C08p50090' => 'bna', 'C09p38330' => 'bna', 'C09p53940' => 'bna', 'CAN.G1014.1' => 'can', 'CAN.G644.30' => 'can', 'CAN.G84.47' => 'can', 'CAN.G919.8' => 'can', 'CANSAT54G0113' => 'cansat', 'CANSAT54G1286' => 'cansat', 'CANSAT64G1020' => 'cansat', 'CARHR008080' => 'chi', 'CARHR008090' => 'chi', 'CARHR012130' => 'chi', 'CARHR038390' => 'chi', 'CARHR082330' => 'chi', 'CARHR120520' => 'chi', 'CARHR151470' => 'chi', 'CARHR190950' => 'chi', 'Carub.0001s0760' => 'cru', 'Carub.0001s1146' => 'cru', 'Carub.0003s0721' => 'cru', 'Carub.0004s0858' => 'cru', 'Carub.0005s1040' => 'cru', 'Carub.0006s2035' => 'cru', 'Carub.0015s0005' => 'cru', 'Ca_01607_v3' => 'car', 'Ca_01677_v3' => 'car', 'Ca_06087_v3' => 'car', 'Ca_19238_v3' => 'car', 'Ca_19373_v3' => 'car', 'Ca_21079_v3' => 'car', 'CBR_g54016' => 'cbr', 'CBR_g54018' => 'cbr', 'CBR_g54020' => 'cbr', 'Cc01_g09780' => 'ccan', 'Cc01_g11680' => 'ccan', 'Cc02_g15610' => 'ccan', 'Cc05_g04350' => 'ccan', 'Cc09_g01580' => 'ccan', 'CDE01G0795' => 'cde', 'CDE02G2024' => 'cde', 'CDE02G2260' => 'cde', 'CDE02G4561' => 'cde', 'CDE05G2733' => 'cde', 'CDE05G3422' => 'cde', 'CDE06G2003' => 'cde', 'CDE08G0576' => 'cde', 'CDE09G0048' => 'cde', 'CDE11G0805' => 'cde', 'Cfa003644' => 'cfa', 'Cfa006290' => 'cfa', 'Cfa010080' => 'cfa', 'Cfa011376' => 'cfa', 'Cfa011576' => 'cfa', 'Cfa011577' => 'cfa', 'Cfa014389' => 'cfa', 'Ciclev10006044m.g' => 'ccl', 'Ciclev10006954m.g' => 'ccl', 'Ciclev10015131m.g' => 'ccl', 'Ciclev10015580m.g' => 'ccl', 'Ciclev10028359m.g' => 'ccl', 'Ciclev10028573m.g' => 'ccl', 'CiPaw.03G159300' => 'cil', 'CiPaw.04G115100' => 'cil', 'CiPaw.09G092800' => 'cil', 'CiPaw.10G071800' => 'cil', 'CiPaw.13G105800' => 'cil', 'CiPaw.13G141000' => 'cil', 'CiPaw.14G103400' => 'cil', 'ClCG01G012700' => 'cla', 'ClCG01G012720' => 'cla', 'ClCG01G021920' => 'cla', 'ClCG02G008870' => 'cla', 'ClCG02G020840' => 'cla', 'ClCG02G021930' => 'cla', 'COL.COLO4_19302' => 'col', 'COL.COLO4_25262' => 'col', 'COL.COLO4_31788' => 'col', 'Cpa.g.c34684' => 'cpa', 'Cpa.g.c36520.1' => 'cpa', 'Cpa.g.c45626' => 'cpa', 'Cpa.g.sc121.17' => 'cpa', 'Cpa.g.sc13.22' => 'cpa', 'Cpa.g.sc87.88' => 'cpa', 'Cre06.g261800' => 'cre', 'CsaV3_1G014500' => 'csa', 'CsaV3_1G014510' => 'csa', 'CsaV3_2G034880' => 'csa', 'CsaV3_6G014760' => 'csa', 'CsaV3_6G021500' => 'csa', 'CsaV3_6G048980' => 'csa', 'CSS0002511' => 'camsi', 'CSS0007556' => 'camsi', 'CSS0008532' => 'camsi', 'CSS0009709' => 'camsi', 'CSS0010486' => 'camsi', 'CSS0016768' => 'camsi', 'CSS0023512' => 'camsi', 'CSS0025341' => 'camsi', 'CSS0027999' => 'camsi', 'CSS0028944' => 'camsi', 'CSS0032292' => 'camsi', 'CSS0032464' => 'camsi', 'CSS0037153' => 'camsi', 'CSS0039256' => 'camsi', 'CSS0048392' => 'camsi', 'CSS0050458' => 'camsi', 'DCAR_004224' => 'dca', 'DCAR_006147' => 'dca', 'DCAR_006465' => 'dca', 'DCAR_008159' => 'dca', 'DCAR_012164' => 'dca', 'DCAR_019764' => 'dca', 'Dinv05418' => 'din', 'Dinv10839' => 'din', 'Dinv12521' => 'din', 'Dinv13900' => 'din', 'Dinv29426' => 'din', 'Duzib150G0263' => 'dzi', 'Duzib168G1178' => 'dzi', 'Duzib168G1924' => 'dzi', 'Duzib170G0299' => 'dzi', 'Duzib170G0813' => 'dzi', 'Duzib235G1128' => 'dzi', 'Duzib248G1060' => 'dzi', 'ECA232G1910' => 'eca', 'ECA233G4621' => 'eca', 'ECA238G1216' => 'eca', 'ECA238G1784' => 'eca', 'ECA248G1242' => 'eca', 'EL10Ac8g20071' => 'bvu', 'EL10Ac9g21086' => 'bvu', 'EL10Ac9g22407' => 'bvu', 'EL10Ac9g22412' => 'bvu', 'Eucgr.A01119' => 'egr', 'Eucgr.E04043' => 'egr', 'Eucgr.J00428' => 'egr', 'Eucgr.J00958' => 'egr', 'FAN11G3091' => 'fan', 'FAN11G3651' => 'fan', 'FAN16G2566' => 'fan', 'FAN21G3155' => 'fan', 'FAN21G3400' => 'fan', 'FAN21G3543' => 'fan', 'FAN25G0234' => 'fan', 'FAN25G1422' => 'fan', 'FAN25G3392' => 'fan', 'FvH4_3g01940' => 'fve', 'FvH4_3g29870' => 'fve', 'FvH4_3g33680' => 'fve', 'Glyma.09G004200' => 'gma', 'Glyma.11G151288' => 'gma', 'Glyma.11G189100' => 'gma', 'Glyma.12G072500' => 'gma', 'Glyma.12G085500' => 'gma', 'Glyma.12G181800' => 'gma', 'Glyma.12G193000' => 'gma', 'Glyma.13G309300' => 'gma', 'Glyma.13G319000' => 'gma', 'Glyma.17G012600' => 'gma', 'Gohir.A06G148600' => 'ghi', 'Gohir.A07G115800' => 'ghi', 'Gohir.A08G003600' => 'ghi', 'Gohir.A09G093300' => 'ghi', 'Gohir.A09G105400' => 'ghi', 'Gohir.A09G105500' => 'ghi', 'Gohir.D06G154600' => 'ghi', 'Gohir.D07G120200' => 'ghi', 'Gohir.D08G013900' => 'ghi', 'Gohir.D09G093100' => 'ghi', 'Gohir.D09G102200' => 'ghi', 'Gohir.D09G102300' => 'ghi', 'Gorai.001G129400' => 'gra', 'Gorai.004G008200' => 'gra', 'Gorai.006G109800' => 'gra', 'Gorai.006G119500' => 'gra', 'Gorai.006G121300' => 'gra', 'Gorai.010G180700' => 'gra', 'GSVIVG01012716001' => 'vvi', 'GSVIVG01025118001' => 'vvi', 'GSVIVG01030439001' => 'vvi', 'GSVIVG01031397001' => 'vvi', 'HanXRQChr01g0004201' => 'han', 'HanXRQChr02g0054941' => 'han', 'HanXRQChr05g0141811' => 'han', 'HanXRQChr07g0197751' => 'han', 'HanXRQChr11g0346691' => 'han', 'HanXRQChr13g0396971' => 'han', 'HanXRQChr14g0432951' => 'han', 'HanXRQChr14g0452001' => 'han', 'HanXRQChr15g0496681' => 'han', 'HanXRQChr17g0557491' => 'han', 'HanXRQChr17g0557501' => 'han', 'Haze_06809' => 'cav', 'Haze_12852' => 'cav', 'Haze_15850' => 'cav', 'Haze_23446' => 'cav', 'Haze_23942' => 'cav', 'Haze_23943' => 'cav', 'Hma1.2p1_0091F.1_g046450' => 'hma', 'Hma1.2p1_0128F.1_g059910' => 'hma', 'Hma1.2p1_0249F.1_g102260' => 'hma', 'Hma1.2p1_0453F.1_g156190' => 'hma', 'Hma1.2p1_0695F.1_g204380' => 'hma', 'Hma1.2p1_0749F.1_g212650' => 'hma', 'Hma1.2p1_2156F.1_g315420' => 'hma', 'Hma1.2p1_2686F.1_g326940' => 'hma', 'HPP92_006428' => 'vpl', 'HPP92_012069' => 'vpl', 'HPP92_014129' => 'vpl', 'HPP92_014133' => 'vpl', 'HPP92_017315' => 'vpl', 'HPP92_026445' => 'vpl', 'HPP92_026446' => 'vpl', 'Hund00774' => 'sun', 'Hund07682' => 'sun', 'Hund21413' => 'sun', 'Hund23462' => 'sun', 'Hund23463' => 'sun', 'Lalb_Chr03g0027911' => 'lal', 'Lalb_Chr13g0304271' => 'lal', 'Lalb_Chr19g0137471' => 'lal', 'Lalb_Chr22g0350651' => 'lal', 'Lalb_Chr24g0395151' => 'lal', 'Lj1A1231T40' => 'lonja', 'Lj1A221T48' => 'lonja', 'Lj1C924T12' => 'lonja', 'Lj2C993G6' => 'lonja', 'Lj3g0005790' => 'lja', 'Lj3g0015432' => 'lja', 'Lj3g0017722' => 'lja', 'Lj3g0018497' => 'lja', 'Lj4g0025071' => 'lja', 'Lsat_1_v5_gn_1_129680' => 'lsa', 'Lsat_1_v5_gn_2_25321' => 'lsa', 'Lsat_1_v5_gn_2_95461' => 'lsa', 'Lsat_1_v5_gn_4_159620' => 'lsa', 'Lsat_1_v5_gn_6_41301' => 'lsa', 'Lsat_1_v5_gn_6_74660' => 'lsa', 'Lsat_1_v5_gn_7_11520' => 'lsa', 'Lsat_1_v5_gn_9_67680' => 'lsa', 'Manes.04G008300' => 'mes', 'Manes.04G008400' => 'mes', 'Manes.04G026500' => 'mes', 'Manes.10G135300' => 'mes', 'Manes.11G157300' => 'mes', 'Manes.12G074000' => 'mes', 'Manes.16G006200' => 'mes', 'Manes.17G026400' => 'mes', 'Mapoly0024s0086' => 'mpo', 'Mapoly0024s0087' => 'mpo', 'Mapoly0071s0057' => 'mpo', 'Mapoly0204s0012' => 'mpo', 'MBI04_g37681_MAGBIO' => 'mbi', 'MBI05_g17779_MAGBIO' => 'mbi', 'MBI12_g31184_MAGBIO' => 'mbi', 'MBI17_g11083_MAGBIO' => 'mbi', 'MBI18_g03883_MAGBIO' => 'mbi', 'MBI18_g28940_MAGBIO' => 'mbi', 'MCO01G690' => 'mco', 'MD03G1109900' => 'mdo', 'MD03G1134800' => 'mdo', 'MD05G1348000' => 'mdo', 'MD10G1322400' => 'mdo', 'MD11G1123300' => 'mdo', 'MD11G1157600' => 'mdo', 'Medtr2g084875' => 'mtr', 'Medtr2g088130' => 'mtr', 'Medtr4g055310' => 'mtr', 'Medtr4g061070' => 'mtr', 'Medtr4g132250' => 'mtr', 'MELO3C004795.2' => 'cme', 'MELO3C004797.2' => 'cme', 'MELO3C007396.2' => 'cme', 'MELO3C019277.2' => 'cme', 'MELO3C021449.2' => 'cme', 'MELO3C025736.2' => 'cme', 'Migut.D02175' => 'egut', 'Migut.H01573' => 'egut', 'Migut.M01327' => 'egut', 'Migut.N02513' => 'egut', 'MSTRG.14638' => 'ama', 'MSTRG.18632' => 'ama', 'MSTRG.7203' => 'ama', 'Nitab4.5_0000533g0140' => 'nta', 'Nitab4.5_0000888g0150' => 'nta', 'Nitab4.5_0001453g0040' => 'nta', 'Nitab4.5_0002827g0090' => 'nta', 'Nitab4.5_0003082g0040' => 'nta', 'Nitab4.5_0007799g0040' => 'nta', 'Nitab4.5_0008983g0010' => 'nta', 'Nitab4.5_0009017g0020' => 'nta', 'Nn1g02132' => 'nnu', 'Nn1g03492' => 'nnu', 'Nn1g03493' => 'nnu', 'Nn1g03494' => 'nnu', 'Nn1g07164' => 'nnu', 'Nn1g07291' => 'nnu', 'Nn2g10655' => 'nnu', 'Nn2g11652' => 'nnu', 'Nn2g14008' => 'nnu', 'Nn3g17476' => 'nnu', 'Nn3g17477' => 'nnu', 'Nn4g22370' => 'nnu', 'Nn4g25255' => 'nnu', 'Nn5g27755' => 'nnu', 'Nn6g34260' => 'nnu', 'Nn6g35041' => 'nnu', 'Oeu005924.1' => 'oeu', 'Oeu008383.1' => 'oeu', 'Oeu014928.1' => 'oeu', 'Oeu019889.1' => 'oeu', 'Oeu022271.1' => 'oeu', 'Oeu025271.1' => 'oeu', 'Oeu036302.1' => 'oeu', 'Oeu044100.1' => 'oeu', 'Os01g0528300' => 'osa', 'Os03g0286200' => 'osa', 'Os04g0406600' => 'osa', 'Os07g0512000' => 'osa', 'Os07g0694600' => 'osa', 'Os08g0411000' => 'osa', 'Os09g0565700' => 'osa', 'Os09g0566050' => 'osa', 'Os10g0523700' => 'osa', 'Peaxi162Scf00002g00514' => 'pax', 'Peaxi162Scf00047g01817' => 'pax', 'Peaxi162Scf00114g00001' => 'pax', 'Peaxi162Scf00147g00613' => 'pax', 'Peaxi162Scf00389g00425' => 'pax', 'PGR042G1139' => 'pgr', 'PGR042G3273' => 'pgr', 'PGR102G2180' => 'pgr', 'PGR119G0234' => 'pgr', 'PGR119G0668' => 'pgr', 'PGSC0003DMG400007122' => 'stu', 'PGSC0003DMG400016478' => 'stu', 'PGSC0003DMG400025374' => 'stu', 'PGSC0003DMG400026536' => 'stu', 'Phvul.003G079600' => 'pvu', 'Phvul.005G115600' => 'pvu', 'Phvul.005G127100' => 'pvu', 'Phvul.006G149500' => 'pvu', 'Phvul.006G149600' => 'pvu', 'Phvul.011G071800' => 'pvu', 'Phvul.011G090400' => 'pvu', 'Potri.004G013400' => 'ptr', 'Potri.004G188100' => 'ptr', 'Potri.008G195500' => 'ptr', 'Potri.009G148800' => 'ptr', 'Potri.011G004700' => 'ptr', 'Pp3c17_22810' => 'ppa', 'Pp3c18_4480' => 'ppa', 'Pp3c19_13030' => 'ppa', 'Pp3c1_33620' => 'ppa', 'Pp3c2_9380' => 'ppa', 'PRCOL_00001023' => 'pco', 'Prupe.3G216300' => 'ppe', 'Prupe.4G019500' => 'ppe', 'Prupe.6G092500' => 'ppe', 'Prupe.6G119200' => 'ppe', 'Psat0s1945g0080' => 'psa', 'Psat0s4167g0040' => 'psa', 'Psat1g185800' => 'psa', 'Psat4g006440' => 'psa', 'Psat4g006480' => 'psa', 'Psat4g168120' => 'psa', 'Psat5g255680' => 'psa', 'Psat5g261760' => 'psa', 'Psat7g222120' => 'psa', 'PSO063G7252' => 'pso', 'PSO170G4778' => 'pso', 'PSO210G2249' => 'pso', 'PSO339G2411' => 'pso', 'PSO339G2457' => 'pso', 'PSO339G2854' => 'pso', 'PSO339G4288' => 'pso', 'PSO339G4615' => 'pso', 'PSO384G2796' => 'pso', 'PSO384G2940' => 'pso', 'PSO384G4227' => 'pso', 'PSO478G1425' => 'pso', 'PSO541G3863' => 'pso', 'PSO675G0507' => 'pso', 'PSO782G0338' => 'pso', 'PSO832G0644' => 'pso', 'QL01p013664' => 'qlo', 'QL01p036598' => 'qlo', 'QL05p072984' => 'qlo', 'QL08p005768' => 'qlo', 'QL08p032743' => 'qlo', 'QL93p0073_0439' => 'qlo', 'QL93p0073_0444' => 'qlo', 'RcHm_v2.0_Chr5g0002851' => 'rch', 'RcHm_v2.0_Chr5g0055201' => 'rch', 'RcHm_v2.0_Chr5g0061191' => 'rch', 'RcHm_v2.0_Chr7g0203231' => 'rch', 'Rhsim01G0208100' => 'rsi', 'Rhsim01G0208200' => 'rsi', 'Rhsim02G0106500' => 'rsi', 'Rhsim03G0107900' => 'rsi', 'Rhsim06G0163400' => 'rsi', 'Rhsim13G0105200' => 'rsi', 'Sabra04G0006300' => 'sbr', 'Sabra04G0127000' => 'sbr', 'Sabra08G0148700' => 'sbr', 'Sabra09G0117400' => 'sbr', 'SalBow1G3326' => 'sbo', 'SalBow3G3228' => 'sbo', 'SalBow6G1634' => 'sbo', 'SalBow6G3603' => 'sbo', 'SalBow6G5266' => 'sbo', 'SalBow7G2265' => 'sbo', 'SalBow8G0850' => 'sbo', 'SalBow8G2592' => 'sbo', 'Sc05g0009240' => 'sci', 'Sc12g0002300' => 'sci', 'Sc21g0000100' => 'sci', 'Sc21g0004720' => 'sci', 'Sed0002949' => 'sed', 'Sed0004114' => 'sed', 'Sed0004306' => 'sed', 'Sed0006172' => 'sed', 'Sed0008413' => 'sed', 'Sed0013809' => 'sed', 'Sed0019556' => 'sed', 'SEGI_03570' => 'sgi', 'SEGI_07859' => 'sgi', 'SEGI_15042' => 'sgi', 'SEGI_16263' => 'sgi', 'SEGI_16552' => 'sgi', 'SEGI_24331' => 'sgi', 'SEGI_27316' => 'sgi', 'SEGI_29521' => 'sgi', 'SEGI_41342' => 'sgi', 'SGA_v2.0_scaffold27G11617' => 'sas', 'SGA_v2.0_scaffold316G48428' => 'sas', 'SGA_v2.0_scaffold49G18261' => 'sas', 'SGA_v2.0_scaffold7G03831' => 'sas', 'SGA_v2.0_scaffold93G28359' => 'sas', 'SHI02210' => 'shi', 'SHI06028' => 'shi', 'SHI06321' => 'shi', 'SMO111G0012' => 'smo', 'SMO228G0080' => 'smo', 'SMO356G0756' => 'smo', 'Solyc02g080620.3' => 'sly', 'Solyc06g074530.1' => 'sly', 'Solyc11g066890.1' => 'sly', 'Solyc11g072520.3' => 'sly', 'Sopen02g025330' => 'spe', 'Sopen06g031000' => 'spe', 'Sopen09g008240' => 'spe', 'Sopen09g025210' => 'spe', 'Sopen11g026600' => 'spe', 'Sopen11g030170' => 'spe', 'Sp1g10420' => 'spa', 'Sp3g06570' => 'spa', 'Sp4g10660' => 'spa', 'Sp5g16460' => 'spa', 'Sp6g22710' => 'spa', 'TAR365G0112' => 'tar', 'TAR369G0717' => 'tar', 'TAR374G0976' => 'tar', 'TAR623G1128' => 'tar', 'TAR626G1937' => 'tar', 'TAR627G0123' => 'tar', 'TAR628G0305' => 'tar', 'TAR636G1176' => 'tar', 'TAR636G2442' => 'tar', 'THA.LOC104800556' => 'tha', 'THA.LOC104809501' => 'tha', 'THA.LOC104815126' => 'tha', 'THA.LOC104815732' => 'tha', 'THA.LOC104823528' => 'tha', 'Thecc.02G365600' => 'tca', 'Thecc.06G222300' => 'tca', 'Thecc.09G261800' => 'tca', 'Thecc.09G291400' => 'tca', 'Thhalv10003028m.g' => 'esa', 'Thhalv10007886m.g' => 'esa', 'Thhalv10016085m.g' => 'esa', 'Thhalv10016681m.g' => 'esa', 'Thhalv10020951m.g' => 'esa', 'TPR.G15598' => 'tpr', 'TPR.G29305' => 'tpr', 'TPR.G32395' => 'tpr', 'TPR.G36998' => 'tpr', 'TPR.G4227' => 'tpr', 'TWI18G1433' => 'twi', 'TWI31G0755' => 'twi', 'TWI38G0912' => 'twi', 'TWI75G1097' => 'twi', 'TWI75G1619' => 'twi', 'TWI79G1336' => 'twi', 'unitig_0.g943' => 'ugi', 'unitig_0.g944' => 'ugi', 'unitig_22.g6646' => 'ugi', 'unitig_37.g12681' => 'ugi', 'unitig_8.g3290' => 'ugi', 'vmacro03278' => 'vma', 'vmacro12197' => 'vma', 'vmacro14478' => 'vma', 'vmacro15787' => 'vma', 'vmacro15789' => 'vma', 'vmacro15790' => 'vma', 'vmacro15806' => 'vma', 'vmacro22907' => 'vma', 'vmacro22908' => 'vma', 'vmacro22909' => 'vma', 'vmacro23108' => 'vma', 'VMungo0540G0540' => 'vmu', 'VMungo0540G2468' => 'vmu', 'VMungo1080G0390' => 'vmu', 'VMungo1080G1165' => 'vmu', 'VMungo1127G0170' => 'vmu', 'VMungo1127G2099' => 'vmu', 'VMungo1215G3013' => 'vmu', 'Zm00001eb013110' => 'zma', 'Zm00001eb084260' => 'zma', 'Zm00001eb096110' => 'zma', 'Zm00001eb217510' => 'zma', 'Zm00001eb322550' => 'zma', 'Zm00001eb390770' => 'zma', 'Zm00001eb397170' => 'zma', 'Zm00001eb404610' => 'zma', 'Zm00001eb421790' => 'zma' ) $gf_id = 'HOM05D000911' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000911' ) $data_identifier = 'HOM05D000911' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 16, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 5, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 6, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 8, 'nnu' => (int) 16, 'oeu' => (int) 8, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 5, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 16, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421790' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000911', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27780' => 'bna', 'A03p35380' => 'bna', 'A04p21160' => 'bna', 'A05p40570' => 'bna', 'A06p26900' => 'bna', 'A08p33230' => 'bna', 'A09p65960' => 'bna', 'A10p18290' => 'bna', 'Aa31LG1G12990' => 'aar', 'Aa31LG1G2980' => 'aar', 'Aa31LG4G14320' => 'aar', 'Aa31LG7G11800' => 'aar', 'Aa31sc36G50' => 'aar', 'Aa31sc36G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3721' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5459' => 'aag', 'Actinidia03028' => 'ach', 'Actinidia03753' => 'ach', 'Actinidia04187' => 'ach', 'Actinidia05509' => 'ach', 'Actinidia24180' => 'ach', 'Actinidia26906' => 'ach', 'Actinidia37097' => 'ach', 'Actinidia38249' => 'ach', 'Ah.01g003470' => 'amhyb', 'Ah.01g004580' => 'amhyb', 'Ah.01g014850' => 'amhyb', 'Ah.01g016830' => 'amhyb', 'Ah.14g088000' => 'amhyb', 'AL1G22980' => 'aly', 'AL3G18990' => 'aly', 'AL4G22440' => 'aly', 'AL4G33180' => 'aly', 'AL5G22920' => 'aly', 'AL6G33660' => 'aly', 'AL8G20720' => 'aly', 'Aqoxy1G00935' => 'aox', 'Aqoxy1G02094' => 'aox', 'Aqoxy2G01239' => 'aox', 'Aqoxy4G01870' => 'aox', 'Aqoxy7G00450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.36ZVTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71EM27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5D6C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH3WRE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3NCM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RIM768' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YB5YRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z36GDV' => 'arhy', 'AT1G08250' => 'ath', 'AT1G11790' => 'ath', 'AT2G27820' => 'ath', 'AT3G07630' => 'ath', 'AT3G44720' => 'ath', 'AT5G22630' => 'ath', 'ATR0693G304' => 'atr', 'ATR0794G109' => 'atr', 'ATR0820G120' => 'atr', 'ATR1159G064' => 'atr', 'Atru.chr10.2239' => 'acertr', 'Atru.chr3.3371' => 'acertr', 'Atru.chr6.3202' => 'acertr', 'AUR62006499' => 'cqu', 'AUR62012718' => 'cqu', 'AUR62021938' => 'cqu', 'AUR62023932' => 'cqu', 'AUR62025034' => 'cqu', 'AUR62025035' => 'cqu', 'AUR62038307' => 'cqu', 'AUR62043466' => 'cqu', 'BcaB02g10748' => 'bca', 'BcaB03g13231' => 'bca', 'BcaB03g14689' => 'bca', 'BcaB05g22716' => 'bca', 'BcaB06g28172' => 'bca', 'BcaB08g36413' => 'bca', 'BcaC01g02186' => 'bca', 'BcaC01g04272' => 'bca', 'BcaC02g08080' => 'bca', 'BcaC02g08227' => 'bca', 'BcaC03g13901' => 'bca', 'BcaC04g19593' => 'bca', 'BcaC04g20874' => 'bca', 'BcaC05g29557' => 'bca', 'BcaC06g35505' => 'bca', 'BcaC07g41954' => 'bca', 'BcaC07g41955' => 'bca', 'BcaC07g41956' => 'bca', 'BcaC07g42519' => 'bca', 'BcaC07g42520' => 'bca', 'BcaC07g42523' => 'bca', 'BcaC07g42524' => 'bca', 'BcaC07g42525' => 'bca', 'BcaC08g47480' => 'bca', 'BcaC08g47481' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00530' => 'bna', 'BolC2t07178H' => 'bol', 'BolC3t16567H' => 'bol', 'BolC4t27234H' => 'bol', 'BolC5t29728H' => 'bol', 'BolC5t34622H' => 'bol', 'BolC6t40321H' => 'bol', 'BolC7t42028H' => 'bol', 'BolC8t49125H' => 'bol', 'BolC8t52538H' => 'bol', 'BolC8t52539H' => 'bol', 'BolC9t56681H' => 'bol', 'BolC9t58266H' => 'bol', 'BolSC21t60294H' => 'bol', 'BraA02t05670Z' => 'bra', 'BraA03t12716Z' => 'bra', 'BraA04t17685Z' => 'bra', 'BraA05t22788Z' => 'bra', 'BraA06t24032Z' => 'bra', 'BraA06t25625Z' => 'bra', 'BraA07t27930Z' => 'bra', 'BraA08t35242Z' => 'bra', 'BraA09t38609Z' => 'bra', 'BraA10t43905Z' => 'bra', 'C02p11060' => 'bna', 'C03p42990' => 'bna', 'C03p67310' => 'bna', 'C04p56990' => 'bna', 'C04p58660' => 'bna', 'C05p09890' => 'bna', 'C05p59680' => 'bna', 'C06p19830' => 'bna', 'C06p53040' => 'bna', 'C07p15230' => 'bna', 'C08p50070' => 'bna', 'C08p50090' => 'bna', 'C09p38330' => 'bna', 'C09p53940' => 'bna', 'CAN.G1014.1' => 'can', 'CAN.G644.30' => 'can', 'CAN.G84.47' => 'can', 'CAN.G919.8' => 'can', 'CANSAT54G0113' => 'cansat', 'CANSAT54G1286' => 'cansat', 'CANSAT64G1020' => 'cansat', 'CARHR008080' => 'chi', 'CARHR008090' => 'chi', 'CARHR012130' => 'chi', 'CARHR038390' => 'chi', 'CARHR082330' => 'chi', 'CARHR120520' => 'chi', 'CARHR151470' => 'chi', 'CARHR190950' => 'chi', 'Carub.0001s0760' => 'cru', 'Carub.0001s1146' => 'cru', 'Carub.0003s0721' => 'cru', 'Carub.0004s0858' => 'cru', 'Carub.0005s1040' => 'cru', 'Carub.0006s2035' => 'cru', 'Carub.0015s0005' => 'cru', 'Ca_01607_v3' => 'car', 'Ca_01677_v3' => 'car', 'Ca_06087_v3' => 'car', 'Ca_19238_v3' => 'car', 'Ca_19373_v3' => 'car', 'Ca_21079_v3' => 'car', 'CBR_g54016' => 'cbr', 'CBR_g54018' => 'cbr', 'CBR_g54020' => 'cbr', 'Cc01_g09780' => 'ccan', 'Cc01_g11680' => 'ccan', 'Cc02_g15610' => 'ccan', 'Cc05_g04350' => 'ccan', 'Cc09_g01580' => 'ccan', 'CDE01G0795' => 'cde', 'CDE02G2024' => 'cde', 'CDE02G2260' => 'cde', 'CDE02G4561' => 'cde', 'CDE05G2733' => 'cde', 'CDE05G3422' => 'cde', 'CDE06G2003' => 'cde', 'CDE08G0576' => 'cde', 'CDE09G0048' => 'cde', 'CDE11G0805' => 'cde', 'Cfa003644' => 'cfa', 'Cfa006290' => 'cfa', 'Cfa010080' => 'cfa', 'Cfa011376' => 'cfa', 'Cfa011576' => 'cfa', 'Cfa011577' => 'cfa', 'Cfa014389' => 'cfa', 'Ciclev10006044m.g' => 'ccl', 'Ciclev10006954m.g' => 'ccl', 'Ciclev10015131m.g' => 'ccl', 'Ciclev10015580m.g' => 'ccl', 'Ciclev10028359m.g' => 'ccl', 'Ciclev10028573m.g' => 'ccl', 'CiPaw.03G159300' => 'cil', 'CiPaw.04G115100' => 'cil', 'CiPaw.09G092800' => 'cil', 'CiPaw.10G071800' => 'cil', 'CiPaw.13G105800' => 'cil', 'CiPaw.13G141000' => 'cil', 'CiPaw.14G103400' => 'cil', 'ClCG01G012700' => 'cla', 'ClCG01G012720' => 'cla', 'ClCG01G021920' => 'cla', 'ClCG02G008870' => 'cla', 'ClCG02G020840' => 'cla', 'ClCG02G021930' => 'cla', 'COL.COLO4_19302' => 'col', 'COL.COLO4_25262' => 'col', 'COL.COLO4_31788' => 'col', 'Cpa.g.c34684' => 'cpa', 'Cpa.g.c36520.1' => 'cpa', 'Cpa.g.c45626' => 'cpa', 'Cpa.g.sc121.17' => 'cpa', 'Cpa.g.sc13.22' => 'cpa', 'Cpa.g.sc87.88' => 'cpa', 'Cre06.g261800' => 'cre', 'CsaV3_1G014500' => 'csa', 'CsaV3_1G014510' => 'csa', 'CsaV3_2G034880' => 'csa', 'CsaV3_6G014760' => 'csa', 'CsaV3_6G021500' => 'csa', 'CsaV3_6G048980' => 'csa', 'CSS0002511' => 'camsi', 'CSS0007556' => 'camsi', 'CSS0008532' => 'camsi', 'CSS0009709' => 'camsi', 'CSS0010486' => 'camsi', 'CSS0016768' => 'camsi', 'CSS0023512' => 'camsi', 'CSS0025341' => 'camsi', 'CSS0027999' => 'camsi', 'CSS0028944' => 'camsi', 'CSS0032292' => 'camsi', 'CSS0032464' => 'camsi', 'CSS0037153' => 'camsi', 'CSS0039256' => 'camsi', 'CSS0048392' => 'camsi', 'CSS0050458' => 'camsi', 'DCAR_004224' => 'dca', 'DCAR_006147' => 'dca', 'DCAR_006465' => 'dca', 'DCAR_008159' => 'dca', 'DCAR_012164' => 'dca', 'DCAR_019764' => 'dca', 'Dinv05418' => 'din', 'Dinv10839' => 'din', 'Dinv12521' => 'din', 'Dinv13900' => 'din', 'Dinv29426' => 'din', 'Duzib150G0263' => 'dzi', 'Duzib168G1178' => 'dzi', 'Duzib168G1924' => 'dzi', 'Duzib170G0299' => 'dzi', 'Duzib170G0813' => 'dzi', 'Duzib235G1128' => 'dzi', 'Duzib248G1060' => 'dzi', 'ECA232G1910' => 'eca', 'ECA233G4621' => 'eca', 'ECA238G1216' => 'eca', 'ECA238G1784' => 'eca', 'ECA248G1242' => 'eca', 'EL10Ac8g20071' => 'bvu', 'EL10Ac9g21086' => 'bvu', 'EL10Ac9g22407' => 'bvu', 'EL10Ac9g22412' => 'bvu', 'Eucgr.A01119' => 'egr', 'Eucgr.E04043' => 'egr', 'Eucgr.J00428' => 'egr', 'Eucgr.J00958' => 'egr', 'FAN11G3091' => 'fan', 'FAN11G3651' => 'fan', 'FAN16G2566' => 'fan', 'FAN21G3155' => 'fan', 'FAN21G3400' => 'fan', 'FAN21G3543' => 'fan', 'FAN25G0234' => 'fan', 'FAN25G1422' => 'fan', 'FAN25G3392' => 'fan', 'FvH4_3g01940' => 'fve', 'FvH4_3g29870' => 'fve', 'FvH4_3g33680' => 'fve', 'Glyma.09G004200' => 'gma', 'Glyma.11G151288' => 'gma', 'Glyma.11G189100' => 'gma', 'Glyma.12G072500' => 'gma', 'Glyma.12G085500' => 'gma', 'Glyma.12G181800' => 'gma', 'Glyma.12G193000' => 'gma', 'Glyma.13G309300' => 'gma', 'Glyma.13G319000' => 'gma', 'Glyma.17G012600' => 'gma', 'Gohir.A06G148600' => 'ghi', 'Gohir.A07G115800' => 'ghi', 'Gohir.A08G003600' => 'ghi', 'Gohir.A09G093300' => 'ghi', 'Gohir.A09G105400' => 'ghi', 'Gohir.A09G105500' => 'ghi', 'Gohir.D06G154600' => 'ghi', 'Gohir.D07G120200' => 'ghi', 'Gohir.D08G013900' => 'ghi', 'Gohir.D09G093100' => 'ghi', 'Gohir.D09G102200' => 'ghi', 'Gohir.D09G102300' => 'ghi', 'Gorai.001G129400' => 'gra', 'Gorai.004G008200' => 'gra', 'Gorai.006G109800' => 'gra', 'Gorai.006G119500' => 'gra', 'Gorai.006G121300' => 'gra', 'Gorai.010G180700' => 'gra', 'GSVIVG01012716001' => 'vvi', 'GSVIVG01025118001' => 'vvi', 'GSVIVG01030439001' => 'vvi', 'GSVIVG01031397001' => 'vvi', 'HanXRQChr01g0004201' => 'han', 'HanXRQChr02g0054941' => 'han', 'HanXRQChr05g0141811' => 'han', 'HanXRQChr07g0197751' => 'han', 'HanXRQChr11g0346691' => 'han', 'HanXRQChr13g0396971' => 'han', 'HanXRQChr14g0432951' => 'han', 'HanXRQChr14g0452001' => 'han', 'HanXRQChr15g0496681' => 'han', 'HanXRQChr17g0557491' => 'han', 'HanXRQChr17g0557501' => 'han', 'Haze_06809' => 'cav', 'Haze_12852' => 'cav', 'Haze_15850' => 'cav', 'Haze_23446' => 'cav', 'Haze_23942' => 'cav', 'Haze_23943' => 'cav', 'Hma1.2p1_0091F.1_g046450' => 'hma', 'Hma1.2p1_0128F.1_g059910' => 'hma', 'Hma1.2p1_0249F.1_g102260' => 'hma', 'Hma1.2p1_0453F.1_g156190' => 'hma', 'Hma1.2p1_0695F.1_g204380' => 'hma', 'Hma1.2p1_0749F.1_g212650' => 'hma', 'Hma1.2p1_2156F.1_g315420' => 'hma', 'Hma1.2p1_2686F.1_g326940' => 'hma', 'HPP92_006428' => 'vpl', 'HPP92_012069' => 'vpl', 'HPP92_014129' => 'vpl', 'HPP92_014133' => 'vpl', 'HPP92_017315' => 'vpl', 'HPP92_026445' => 'vpl', 'HPP92_026446' => 'vpl', 'Hund00774' => 'sun', 'Hund07682' => 'sun', 'Hund21413' => 'sun', 'Hund23462' => 'sun', 'Hund23463' => 'sun', 'Lalb_Chr03g0027911' => 'lal', 'Lalb_Chr13g0304271' => 'lal', 'Lalb_Chr19g0137471' => 'lal', 'Lalb_Chr22g0350651' => 'lal', 'Lalb_Chr24g0395151' => 'lal', 'Lj1A1231T40' => 'lonja', 'Lj1A221T48' => 'lonja', 'Lj1C924T12' => 'lonja', 'Lj2C993G6' => 'lonja', 'Lj3g0005790' => 'lja', 'Lj3g0015432' => 'lja', 'Lj3g0017722' => 'lja', 'Lj3g0018497' => 'lja', 'Lj4g0025071' => 'lja', 'Lsat_1_v5_gn_1_129680' => 'lsa', 'Lsat_1_v5_gn_2_25321' => 'lsa', 'Lsat_1_v5_gn_2_95461' => 'lsa', 'Lsat_1_v5_gn_4_159620' => 'lsa', 'Lsat_1_v5_gn_6_41301' => 'lsa', 'Lsat_1_v5_gn_6_74660' => 'lsa', 'Lsat_1_v5_gn_7_11520' => 'lsa', 'Lsat_1_v5_gn_9_67680' => 'lsa', 'Manes.04G008300' => 'mes', 'Manes.04G008400' => 'mes', 'Manes.04G026500' => 'mes', 'Manes.10G135300' => 'mes', 'Manes.11G157300' => 'mes', 'Manes.12G074000' => 'mes', 'Manes.16G006200' => 'mes', 'Manes.17G026400' => 'mes', 'Mapoly0024s0086' => 'mpo', 'Mapoly0024s0087' => 'mpo', 'Mapoly0071s0057' => 'mpo', 'Mapoly0204s0012' => 'mpo', 'MBI04_g37681_MAGBIO' => 'mbi', 'MBI05_g17779_MAGBIO' => 'mbi', 'MBI12_g31184_MAGBIO' => 'mbi', 'MBI17_g11083_MAGBIO' => 'mbi', 'MBI18_g03883_MAGBIO' => 'mbi', 'MBI18_g28940_MAGBIO' => 'mbi', 'MCO01G690' => 'mco', 'MD03G1109900' => 'mdo', 'MD03G1134800' => 'mdo', 'MD05G1348000' => 'mdo', 'MD10G1322400' => 'mdo', 'MD11G1123300' => 'mdo', 'MD11G1157600' => 'mdo', 'Medtr2g084875' => 'mtr', 'Medtr2g088130' => 'mtr', 'Medtr4g055310' => 'mtr', 'Medtr4g061070' => 'mtr', 'Medtr4g132250' => 'mtr', 'MELO3C004795.2' => 'cme', 'MELO3C004797.2' => 'cme', 'MELO3C007396.2' => 'cme', 'MELO3C019277.2' => 'cme', 'MELO3C021449.2' => 'cme', 'MELO3C025736.2' => 'cme', 'Migut.D02175' => 'egut', 'Migut.H01573' => 'egut', 'Migut.M01327' => 'egut', 'Migut.N02513' => 'egut', 'MSTRG.14638' => 'ama', 'MSTRG.18632' => 'ama', 'MSTRG.7203' => 'ama', 'Nitab4.5_0000533g0140' => 'nta', 'Nitab4.5_0000888g0150' => 'nta', 'Nitab4.5_0001453g0040' => 'nta', 'Nitab4.5_0002827g0090' => 'nta', 'Nitab4.5_0003082g0040' => 'nta', 'Nitab4.5_0007799g0040' => 'nta', 'Nitab4.5_0008983g0010' => 'nta', 'Nitab4.5_0009017g0020' => 'nta', 'Nn1g02132' => 'nnu', 'Nn1g03492' => 'nnu', 'Nn1g03493' => 'nnu', 'Nn1g03494' => 'nnu', 'Nn1g07164' => 'nnu', 'Nn1g07291' => 'nnu', 'Nn2g10655' => 'nnu', 'Nn2g11652' => 'nnu', 'Nn2g14008' => 'nnu', 'Nn3g17476' => 'nnu', 'Nn3g17477' => 'nnu', 'Nn4g22370' => 'nnu', 'Nn4g25255' => 'nnu', 'Nn5g27755' => 'nnu', 'Nn6g34260' => 'nnu', 'Nn6g35041' => 'nnu', 'Oeu005924.1' => 'oeu', 'Oeu008383.1' => 'oeu', 'Oeu014928.1' => 'oeu', 'Oeu019889.1' => 'oeu', 'Oeu022271.1' => 'oeu', 'Oeu025271.1' => 'oeu', 'Oeu036302.1' => 'oeu', 'Oeu044100.1' => 'oeu', 'Os01g0528300' => 'osa', 'Os03g0286200' => 'osa', 'Os04g0406600' => 'osa', 'Os07g0512000' => 'osa', 'Os07g0694600' => 'osa', 'Os08g0411000' => 'osa', 'Os09g0565700' => 'osa', 'Os09g0566050' => 'osa', 'Os10g0523700' => 'osa', 'Peaxi162Scf00002g00514' => 'pax', 'Peaxi162Scf00047g01817' => 'pax', 'Peaxi162Scf00114g00001' => 'pax', 'Peaxi162Scf00147g00613' => 'pax', 'Peaxi162Scf00389g00425' => 'pax', 'PGR042G1139' => 'pgr', 'PGR042G3273' => 'pgr', 'PGR102G2180' => 'pgr', 'PGR119G0234' => 'pgr', 'PGR119G0668' => 'pgr', 'PGSC0003DMG400007122' => 'stu', 'PGSC0003DMG400016478' => 'stu', 'PGSC0003DMG400025374' => 'stu', 'PGSC0003DMG400026536' => 'stu', 'Phvul.003G079600' => 'pvu', 'Phvul.005G115600' => 'pvu', 'Phvul.005G127100' => 'pvu', 'Phvul.006G149500' => 'pvu', 'Phvul.006G149600' => 'pvu', 'Phvul.011G071800' => 'pvu', 'Phvul.011G090400' => 'pvu', 'Potri.004G013400' => 'ptr', 'Potri.004G188100' => 'ptr', 'Potri.008G195500' => 'ptr', 'Potri.009G148800' => 'ptr', 'Potri.011G004700' => 'ptr', 'Pp3c17_22810' => 'ppa', 'Pp3c18_4480' => 'ppa', 'Pp3c19_13030' => 'ppa', 'Pp3c1_33620' => 'ppa', 'Pp3c2_9380' => 'ppa', 'PRCOL_00001023' => 'pco', 'Prupe.3G216300' => 'ppe', 'Prupe.4G019500' => 'ppe', 'Prupe.6G092500' => 'ppe', 'Prupe.6G119200' => 'ppe', 'Psat0s1945g0080' => 'psa', 'Psat0s4167g0040' => 'psa', 'Psat1g185800' => 'psa', 'Psat4g006440' => 'psa', 'Psat4g006480' => 'psa', 'Psat4g168120' => 'psa', 'Psat5g255680' => 'psa', 'Psat5g261760' => 'psa', 'Psat7g222120' => 'psa', 'PSO063G7252' => 'pso', 'PSO170G4778' => 'pso', 'PSO210G2249' => 'pso', 'PSO339G2411' => 'pso', 'PSO339G2457' => 'pso', 'PSO339G2854' => 'pso', 'PSO339G4288' => 'pso', 'PSO339G4615' => 'pso', 'PSO384G2796' => 'pso', 'PSO384G2940' => 'pso', 'PSO384G4227' => 'pso', 'PSO478G1425' => 'pso', 'PSO541G3863' => 'pso', 'PSO675G0507' => 'pso', 'PSO782G0338' => 'pso', 'PSO832G0644' => 'pso', 'QL01p013664' => 'qlo', 'QL01p036598' => 'qlo', 'QL05p072984' => 'qlo', 'QL08p005768' => 'qlo', 'QL08p032743' => 'qlo', 'QL93p0073_0439' => 'qlo', 'QL93p0073_0444' => 'qlo', 'RcHm_v2.0_Chr5g0002851' => 'rch', 'RcHm_v2.0_Chr5g0055201' => 'rch', 'RcHm_v2.0_Chr5g0061191' => 'rch', 'RcHm_v2.0_Chr7g0203231' => 'rch', 'Rhsim01G0208100' => 'rsi', 'Rhsim01G0208200' => 'rsi', 'Rhsim02G0106500' => 'rsi', 'Rhsim03G0107900' => 'rsi', 'Rhsim06G0163400' => 'rsi', 'Rhsim13G0105200' => 'rsi', 'Sabra04G0006300' => 'sbr', 'Sabra04G0127000' => 'sbr', 'Sabra08G0148700' => 'sbr', 'Sabra09G0117400' => 'sbr', 'SalBow1G3326' => 'sbo', 'SalBow3G3228' => 'sbo', 'SalBow6G1634' => 'sbo', 'SalBow6G3603' => 'sbo', 'SalBow6G5266' => 'sbo', 'SalBow7G2265' => 'sbo', 'SalBow8G0850' => 'sbo', 'SalBow8G2592' => 'sbo', 'Sc05g0009240' => 'sci', 'Sc12g0002300' => 'sci', 'Sc21g0000100' => 'sci', 'Sc21g0004720' => 'sci', 'Sed0002949' => 'sed', 'Sed0004114' => 'sed', 'Sed0004306' => 'sed', 'Sed0006172' => 'sed', 'Sed0008413' => 'sed', 'Sed0013809' => 'sed', 'Sed0019556' => 'sed', 'SEGI_03570' => 'sgi', 'SEGI_07859' => 'sgi', 'SEGI_15042' => 'sgi', 'SEGI_16263' => 'sgi', 'SEGI_16552' => 'sgi', 'SEGI_24331' => 'sgi', 'SEGI_27316' => 'sgi', 'SEGI_29521' => 'sgi', 'SEGI_41342' => 'sgi', 'SGA_v2.0_scaffold27G11617' => 'sas', 'SGA_v2.0_scaffold316G48428' => 'sas', 'SGA_v2.0_scaffold49G18261' => 'sas', 'SGA_v2.0_scaffold7G03831' => 'sas', 'SGA_v2.0_scaffold93G28359' => 'sas', 'SHI02210' => 'shi', 'SHI06028' => 'shi', 'SHI06321' => 'shi', 'SMO111G0012' => 'smo', 'SMO228G0080' => 'smo', 'SMO356G0756' => 'smo', 'Solyc02g080620.3' => 'sly', 'Solyc06g074530.1' => 'sly', 'Solyc11g066890.1' => 'sly', 'Solyc11g072520.3' => 'sly', 'Sopen02g025330' => 'spe', 'Sopen06g031000' => 'spe', 'Sopen09g008240' => 'spe', 'Sopen09g025210' => 'spe', 'Sopen11g026600' => 'spe', 'Sopen11g030170' => 'spe', 'Sp1g10420' => 'spa', 'Sp3g06570' => 'spa', 'Sp4g10660' => 'spa', 'Sp5g16460' => 'spa', 'Sp6g22710' => 'spa', 'TAR365G0112' => 'tar', 'TAR369G0717' => 'tar', 'TAR374G0976' => 'tar', 'TAR623G1128' => 'tar', 'TAR626G1937' => 'tar', 'TAR627G0123' => 'tar', 'TAR628G0305' => 'tar', 'TAR636G1176' => 'tar', 'TAR636G2442' => 'tar', 'THA.LOC104800556' => 'tha', 'THA.LOC104809501' => 'tha', 'THA.LOC104815126' => 'tha', 'THA.LOC104815732' => 'tha', 'THA.LOC104823528' => 'tha', 'Thecc.02G365600' => 'tca', 'Thecc.06G222300' => 'tca', 'Thecc.09G261800' => 'tca', 'Thecc.09G291400' => 'tca', 'Thhalv10003028m.g' => 'esa', 'Thhalv10007886m.g' => 'esa', 'Thhalv10016085m.g' => 'esa', 'Thhalv10016681m.g' => 'esa', 'Thhalv10020951m.g' => 'esa', 'TPR.G15598' => 'tpr', 'TPR.G29305' => 'tpr', 'TPR.G32395' => 'tpr', 'TPR.G36998' => 'tpr', 'TPR.G4227' => 'tpr', 'TWI18G1433' => 'twi', 'TWI31G0755' => 'twi', 'TWI38G0912' => 'twi', 'TWI75G1097' => 'twi', 'TWI75G1619' => 'twi', 'TWI79G1336' => 'twi', 'unitig_0.g943' => 'ugi', 'unitig_0.g944' => 'ugi', 'unitig_22.g6646' => 'ugi', 'unitig_37.g12681' => 'ugi', 'unitig_8.g3290' => 'ugi', 'vmacro03278' => 'vma', 'vmacro12197' => 'vma', 'vmacro14478' => 'vma', 'vmacro15787' => 'vma', 'vmacro15789' => 'vma', 'vmacro15790' => 'vma', 'vmacro15806' => 'vma', 'vmacro22907' => 'vma', 'vmacro22908' => 'vma', 'vmacro22909' => 'vma', 'vmacro23108' => 'vma', 'VMungo0540G0540' => 'vmu', 'VMungo0540G2468' => 'vmu', 'VMungo1080G0390' => 'vmu', 'VMungo1080G1165' => 'vmu', 'VMungo1127G0170' => 'vmu', 'VMungo1127G2099' => 'vmu', 'VMungo1215G3013' => 'vmu', 'Zm00001eb013110' => 'zma', 'Zm00001eb084260' => 'zma', 'Zm00001eb096110' => 'zma', 'Zm00001eb217510' => 'zma', 'Zm00001eb322550' => 'zma', 'Zm00001eb390770' => 'zma', 'Zm00001eb397170' => 'zma', 'Zm00001eb404610' => 'zma', 'Zm00001eb421790' => 'zma' ), 'gf_id' => 'HOM05D000911', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000911' ), 'data_identifier' => 'HOM05D000911', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000911', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27780' => 'bna', 'A03p35380' => 'bna', 'A04p21160' => 'bna', 'A05p40570' => 'bna', 'A06p26900' => 'bna', 'A08p33230' => 'bna', 'A09p65960' => 'bna', 'A10p18290' => 'bna', 'Aa31LG1G12990' => 'aar', 'Aa31LG1G2980' => 'aar', 'Aa31LG4G14320' => 'aar', 'Aa31LG7G11800' => 'aar', 'Aa31sc36G50' => 'aar', 'Aa31sc36G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3721' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5459' => 'aag', 'Actinidia03028' => 'ach', 'Actinidia03753' => 'ach', 'Actinidia04187' => 'ach', 'Actinidia05509' => 'ach', 'Actinidia24180' => 'ach', 'Actinidia26906' => 'ach', 'Actinidia37097' => 'ach', 'Actinidia38249' => 'ach', 'Ah.01g003470' => 'amhyb', 'Ah.01g004580' => 'amhyb', 'Ah.01g014850' => 'amhyb', 'Ah.01g016830' => 'amhyb', 'Ah.14g088000' => 'amhyb', 'AL1G22980' => 'aly', 'AL3G18990' => 'aly', 'AL4G22440' => 'aly', 'AL4G33180' => 'aly', 'AL5G22920' => 'aly', 'AL6G33660' => 'aly', 'AL8G20720' => 'aly', 'Aqoxy1G00935' => 'aox', 'Aqoxy1G02094' => 'aox', 'Aqoxy2G01239' => 'aox', 'Aqoxy4G01870' => 'aox', 'Aqoxy7G00450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.36ZVTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71EM27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5D6C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH3WRE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3NCM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RIM768' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YB5YRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z36GDV' => 'arhy', 'AT1G08250' => 'ath', 'AT1G11790' => 'ath', 'AT2G27820' => 'ath', 'AT3G07630' => 'ath', 'AT3G44720' => 'ath', 'AT5G22630' => 'ath', 'ATR0693G304' => 'atr', 'ATR0794G109' => 'atr', 'ATR0820G120' => 'atr', 'ATR1159G064' => 'atr', 'Atru.chr10.2239' => 'acertr', 'Atru.chr3.3371' => 'acertr', 'Atru.chr6.3202' => 'acertr', 'AUR62006499' => 'cqu', 'AUR62012718' => 'cqu', 'AUR62021938' => 'cqu', 'AUR62023932' => 'cqu', 'AUR62025034' => 'cqu', 'AUR62025035' => 'cqu', 'AUR62038307' => 'cqu', 'AUR62043466' => 'cqu', 'BcaB02g10748' => 'bca', 'BcaB03g13231' => 'bca', 'BcaB03g14689' => 'bca', 'BcaB05g22716' => 'bca', 'BcaB06g28172' => 'bca', 'BcaB08g36413' => 'bca', 'BcaC01g02186' => 'bca', 'BcaC01g04272' => 'bca', 'BcaC02g08080' => 'bca', 'BcaC02g08227' => 'bca', 'BcaC03g13901' => 'bca', 'BcaC04g19593' => 'bca', 'BcaC04g20874' => 'bca', 'BcaC05g29557' => 'bca', 'BcaC06g35505' => 'bca', 'BcaC07g41954' => 'bca', 'BcaC07g41955' => 'bca', 'BcaC07g41956' => 'bca', 'BcaC07g42519' => 'bca', 'BcaC07g42520' => 'bca', 'BcaC07g42523' => 'bca', 'BcaC07g42524' => 'bca', 'BcaC07g42525' => 'bca', 'BcaC08g47480' => 'bca', 'BcaC08g47481' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00530' => 'bna', 'BolC2t07178H' => 'bol', 'BolC3t16567H' => 'bol', 'BolC4t27234H' => 'bol', 'BolC5t29728H' => 'bol', 'BolC5t34622H' => 'bol', 'BolC6t40321H' => 'bol', 'BolC7t42028H' => 'bol', 'BolC8t49125H' => 'bol', 'BolC8t52538H' => 'bol', 'BolC8t52539H' => 'bol', 'BolC9t56681H' => 'bol', 'BolC9t58266H' => 'bol', 'BolSC21t60294H' => 'bol', 'BraA02t05670Z' => 'bra', 'BraA03t12716Z' => 'bra', 'BraA04t17685Z' => 'bra', 'BraA05t22788Z' => 'bra', 'BraA06t24032Z' => 'bra', 'BraA06t25625Z' => 'bra', 'BraA07t27930Z' => 'bra', 'BraA08t35242Z' => 'bra', 'BraA09t38609Z' => 'bra', 'BraA10t43905Z' => 'bra', 'C02p11060' => 'bna', 'C03p42990' => 'bna', 'C03p67310' => 'bna', 'C04p56990' => 'bna', 'C04p58660' => 'bna', 'C05p09890' => 'bna', 'C05p59680' => 'bna', 'C06p19830' => 'bna', 'C06p53040' => 'bna', 'C07p15230' => 'bna', 'C08p50070' => 'bna', 'C08p50090' => 'bna', 'C09p38330' => 'bna', 'C09p53940' => 'bna', 'CAN.G1014.1' => 'can', 'CAN.G644.30' => 'can', 'CAN.G84.47' => 'can', 'CAN.G919.8' => 'can', 'CANSAT54G0113' => 'cansat', 'CANSAT54G1286' => 'cansat', 'CANSAT64G1020' => 'cansat', 'CARHR008080' => 'chi', 'CARHR008090' => 'chi', 'CARHR012130' => 'chi', 'CARHR038390' => 'chi', 'CARHR082330' => 'chi', 'CARHR120520' => 'chi', 'CARHR151470' => 'chi', 'CARHR190950' => 'chi', 'Carub.0001s0760' => 'cru', 'Carub.0001s1146' => 'cru', 'Carub.0003s0721' => 'cru', 'Carub.0004s0858' => 'cru', 'Carub.0005s1040' => 'cru', 'Carub.0006s2035' => 'cru', 'Carub.0015s0005' => 'cru', 'Ca_01607_v3' => 'car', 'Ca_01677_v3' => 'car', 'Ca_06087_v3' => 'car', 'Ca_19238_v3' => 'car', 'Ca_19373_v3' => 'car', 'Ca_21079_v3' => 'car', 'CBR_g54016' => 'cbr', 'CBR_g54018' => 'cbr', 'CBR_g54020' => 'cbr', 'Cc01_g09780' => 'ccan', 'Cc01_g11680' => 'ccan', 'Cc02_g15610' => 'ccan', 'Cc05_g04350' => 'ccan', 'Cc09_g01580' => 'ccan', 'CDE01G0795' => 'cde', 'CDE02G2024' => 'cde', 'CDE02G2260' => 'cde', 'CDE02G4561' => 'cde', 'CDE05G2733' => 'cde', 'CDE05G3422' => 'cde', 'CDE06G2003' => 'cde', 'CDE08G0576' => 'cde', 'CDE09G0048' => 'cde', 'CDE11G0805' => 'cde', 'Cfa003644' => 'cfa', 'Cfa006290' => 'cfa', 'Cfa010080' => 'cfa', 'Cfa011376' => 'cfa', 'Cfa011576' => 'cfa', 'Cfa011577' => 'cfa', 'Cfa014389' => 'cfa', 'Ciclev10006044m.g' => 'ccl', 'Ciclev10006954m.g' => 'ccl', 'Ciclev10015131m.g' => 'ccl', 'Ciclev10015580m.g' => 'ccl', 'Ciclev10028359m.g' => 'ccl', 'Ciclev10028573m.g' => 'ccl', 'CiPaw.03G159300' => 'cil', 'CiPaw.04G115100' => 'cil', 'CiPaw.09G092800' => 'cil', 'CiPaw.10G071800' => 'cil', 'CiPaw.13G105800' => 'cil', 'CiPaw.13G141000' => 'cil', 'CiPaw.14G103400' => 'cil', 'ClCG01G012700' => 'cla', 'ClCG01G012720' => 'cla', 'ClCG01G021920' => 'cla', 'ClCG02G008870' => 'cla', 'ClCG02G020840' => 'cla', 'ClCG02G021930' => 'cla', 'COL.COLO4_19302' => 'col', 'COL.COLO4_25262' => 'col', 'COL.COLO4_31788' => 'col', 'Cpa.g.c34684' => 'cpa', 'Cpa.g.c36520.1' => 'cpa', 'Cpa.g.c45626' => 'cpa', 'Cpa.g.sc121.17' => 'cpa', 'Cpa.g.sc13.22' => 'cpa', 'Cpa.g.sc87.88' => 'cpa', 'Cre06.g261800' => 'cre', 'CsaV3_1G014500' => 'csa', 'CsaV3_1G014510' => 'csa', 'CsaV3_2G034880' => 'csa', 'CsaV3_6G014760' => 'csa', 'CsaV3_6G021500' => 'csa', 'CsaV3_6G048980' => 'csa', 'CSS0002511' => 'camsi', 'CSS0007556' => 'camsi', 'CSS0008532' => 'camsi', 'CSS0009709' => 'camsi', 'CSS0010486' => 'camsi', 'CSS0016768' => 'camsi', 'CSS0023512' => 'camsi', 'CSS0025341' => 'camsi', 'CSS0027999' => 'camsi', 'CSS0028944' => 'camsi', 'CSS0032292' => 'camsi', 'CSS0032464' => 'camsi', 'CSS0037153' => 'camsi', 'CSS0039256' => 'camsi', 'CSS0048392' => 'camsi', 'CSS0050458' => 'camsi', 'DCAR_004224' => 'dca', 'DCAR_006147' => 'dca', 'DCAR_006465' => 'dca', 'DCAR_008159' => 'dca', 'DCAR_012164' => 'dca', 'DCAR_019764' => 'dca', 'Dinv05418' => 'din', 'Dinv10839' => 'din', 'Dinv12521' => 'din', 'Dinv13900' => 'din', 'Dinv29426' => 'din', 'Duzib150G0263' => 'dzi', 'Duzib168G1178' => 'dzi', 'Duzib168G1924' => 'dzi', 'Duzib170G0299' => 'dzi', 'Duzib170G0813' => 'dzi', 'Duzib235G1128' => 'dzi', 'Duzib248G1060' => 'dzi', 'ECA232G1910' => 'eca', 'ECA233G4621' => 'eca', 'ECA238G1216' => 'eca', 'ECA238G1784' => 'eca', 'ECA248G1242' => 'eca', 'EL10Ac8g20071' => 'bvu', 'EL10Ac9g21086' => 'bvu', 'EL10Ac9g22407' => 'bvu', 'EL10Ac9g22412' => 'bvu', 'Eucgr.A01119' => 'egr', 'Eucgr.E04043' => 'egr', 'Eucgr.J00428' => 'egr', 'Eucgr.J00958' => 'egr', 'FAN11G3091' => 'fan', 'FAN11G3651' => 'fan', 'FAN16G2566' => 'fan', 'FAN21G3155' => 'fan', 'FAN21G3400' => 'fan', 'FAN21G3543' => 'fan', 'FAN25G0234' => 'fan', 'FAN25G1422' => 'fan', 'FAN25G3392' => 'fan', 'FvH4_3g01940' => 'fve', 'FvH4_3g29870' => 'fve', 'FvH4_3g33680' => 'fve', 'Glyma.09G004200' => 'gma', 'Glyma.11G151288' => 'gma', 'Glyma.11G189100' => 'gma', 'Glyma.12G072500' => 'gma', 'Glyma.12G085500' => 'gma', 'Glyma.12G181800' => 'gma', 'Glyma.12G193000' => 'gma', 'Glyma.13G309300' => 'gma', 'Glyma.13G319000' => 'gma', 'Glyma.17G012600' => 'gma', 'Gohir.A06G148600' => 'ghi', 'Gohir.A07G115800' => 'ghi', 'Gohir.A08G003600' => 'ghi', 'Gohir.A09G093300' => 'ghi', 'Gohir.A09G105400' => 'ghi', 'Gohir.A09G105500' => 'ghi', 'Gohir.D06G154600' => 'ghi', 'Gohir.D07G120200' => 'ghi', 'Gohir.D08G013900' => 'ghi', 'Gohir.D09G093100' => 'ghi', 'Gohir.D09G102200' => 'ghi', 'Gohir.D09G102300' => 'ghi', 'Gorai.001G129400' => 'gra', 'Gorai.004G008200' => 'gra', 'Gorai.006G109800' => 'gra', 'Gorai.006G119500' => 'gra', 'Gorai.006G121300' => 'gra', 'Gorai.010G180700' => 'gra', 'GSVIVG01012716001' => 'vvi', 'GSVIVG01025118001' => 'vvi', 'GSVIVG01030439001' => 'vvi', 'GSVIVG01031397001' => 'vvi', 'HanXRQChr01g0004201' => 'han', 'HanXRQChr02g0054941' => 'han', 'HanXRQChr05g0141811' => 'han', 'HanXRQChr07g0197751' => 'han', 'HanXRQChr11g0346691' => 'han', 'HanXRQChr13g0396971' => 'han', 'HanXRQChr14g0432951' => 'han', 'HanXRQChr14g0452001' => 'han', 'HanXRQChr15g0496681' => 'han', 'HanXRQChr17g0557491' => 'han', 'HanXRQChr17g0557501' => 'han', 'Haze_06809' => 'cav', 'Haze_12852' => 'cav', 'Haze_15850' => 'cav', 'Haze_23446' => 'cav', 'Haze_23942' => 'cav', 'Haze_23943' => 'cav', 'Hma1.2p1_0091F.1_g046450' => 'hma', 'Hma1.2p1_0128F.1_g059910' => 'hma', 'Hma1.2p1_0249F.1_g102260' => 'hma', 'Hma1.2p1_0453F.1_g156190' => 'hma', 'Hma1.2p1_0695F.1_g204380' => 'hma', 'Hma1.2p1_0749F.1_g212650' => 'hma', 'Hma1.2p1_2156F.1_g315420' => 'hma', 'Hma1.2p1_2686F.1_g326940' => 'hma', 'HPP92_006428' => 'vpl', 'HPP92_012069' => 'vpl', 'HPP92_014129' => 'vpl', 'HPP92_014133' => 'vpl', 'HPP92_017315' => 'vpl', 'HPP92_026445' => 'vpl', 'HPP92_026446' => 'vpl', 'Hund00774' => 'sun', 'Hund07682' => 'sun', 'Hund21413' => 'sun', 'Hund23462' => 'sun', 'Hund23463' => 'sun', 'Lalb_Chr03g0027911' => 'lal', 'Lalb_Chr13g0304271' => 'lal', 'Lalb_Chr19g0137471' => 'lal', 'Lalb_Chr22g0350651' => 'lal', 'Lalb_Chr24g0395151' => 'lal', 'Lj1A1231T40' => 'lonja', 'Lj1A221T48' => 'lonja', 'Lj1C924T12' => 'lonja', 'Lj2C993G6' => 'lonja', 'Lj3g0005790' => 'lja', 'Lj3g0015432' => 'lja', 'Lj3g0017722' => 'lja', 'Lj3g0018497' => 'lja', 'Lj4g0025071' => 'lja', 'Lsat_1_v5_gn_1_129680' => 'lsa', 'Lsat_1_v5_gn_2_25321' => 'lsa', 'Lsat_1_v5_gn_2_95461' => 'lsa', 'Lsat_1_v5_gn_4_159620' => 'lsa', 'Lsat_1_v5_gn_6_41301' => 'lsa', 'Lsat_1_v5_gn_6_74660' => 'lsa', 'Lsat_1_v5_gn_7_11520' => 'lsa', 'Lsat_1_v5_gn_9_67680' => 'lsa', 'Manes.04G008300' => 'mes', 'Manes.04G008400' => 'mes', 'Manes.04G026500' => 'mes', 'Manes.10G135300' => 'mes', 'Manes.11G157300' => 'mes', 'Manes.12G074000' => 'mes', 'Manes.16G006200' => 'mes', 'Manes.17G026400' => 'mes', 'Mapoly0024s0086' => 'mpo', 'Mapoly0024s0087' => 'mpo', 'Mapoly0071s0057' => 'mpo', 'Mapoly0204s0012' => 'mpo', 'MBI04_g37681_MAGBIO' => 'mbi', 'MBI05_g17779_MAGBIO' => 'mbi', 'MBI12_g31184_MAGBIO' => 'mbi', 'MBI17_g11083_MAGBIO' => 'mbi', 'MBI18_g03883_MAGBIO' => 'mbi', 'MBI18_g28940_MAGBIO' => 'mbi', 'MCO01G690' => 'mco', 'MD03G1109900' => 'mdo', 'MD03G1134800' => 'mdo', 'MD05G1348000' => 'mdo', 'MD10G1322400' => 'mdo', 'MD11G1123300' => 'mdo', 'MD11G1157600' => 'mdo', 'Medtr2g084875' => 'mtr', 'Medtr2g088130' => 'mtr', 'Medtr4g055310' => 'mtr', 'Medtr4g061070' => 'mtr', 'Medtr4g132250' => 'mtr', 'MELO3C004795.2' => 'cme', 'MELO3C004797.2' => 'cme', 'MELO3C007396.2' => 'cme', 'MELO3C019277.2' => 'cme', 'MELO3C021449.2' => 'cme', 'MELO3C025736.2' => 'cme', 'Migut.D02175' => 'egut', 'Migut.H01573' => 'egut', 'Migut.M01327' => 'egut', 'Migut.N02513' => 'egut', 'MSTRG.14638' => 'ama', 'MSTRG.18632' => 'ama', 'MSTRG.7203' => 'ama', 'Nitab4.5_0000533g0140' => 'nta', 'Nitab4.5_0000888g0150' => 'nta', 'Nitab4.5_0001453g0040' => 'nta', 'Nitab4.5_0002827g0090' => 'nta', 'Nitab4.5_0003082g0040' => 'nta', 'Nitab4.5_0007799g0040' => 'nta', 'Nitab4.5_0008983g0010' => 'nta', 'Nitab4.5_0009017g0020' => 'nta', 'Nn1g02132' => 'nnu', 'Nn1g03492' => 'nnu', 'Nn1g03493' => 'nnu', 'Nn1g03494' => 'nnu', 'Nn1g07164' => 'nnu', 'Nn1g07291' => 'nnu', 'Nn2g10655' => 'nnu', 'Nn2g11652' => 'nnu', 'Nn2g14008' => 'nnu', 'Nn3g17476' => 'nnu', 'Nn3g17477' => 'nnu', 'Nn4g22370' => 'nnu', 'Nn4g25255' => 'nnu', 'Nn5g27755' => 'nnu', 'Nn6g34260' => 'nnu', 'Nn6g35041' => 'nnu', 'Oeu005924.1' => 'oeu', 'Oeu008383.1' => 'oeu', 'Oeu014928.1' => 'oeu', 'Oeu019889.1' => 'oeu', 'Oeu022271.1' => 'oeu', 'Oeu025271.1' => 'oeu', 'Oeu036302.1' => 'oeu', 'Oeu044100.1' => 'oeu', 'Os01g0528300' => 'osa', 'Os03g0286200' => 'osa', 'Os04g0406600' => 'osa', 'Os07g0512000' => 'osa', 'Os07g0694600' => 'osa', 'Os08g0411000' => 'osa', 'Os09g0565700' => 'osa', 'Os09g0566050' => 'osa', 'Os10g0523700' => 'osa', 'Peaxi162Scf00002g00514' => 'pax', 'Peaxi162Scf00047g01817' => 'pax', 'Peaxi162Scf00114g00001' => 'pax', 'Peaxi162Scf00147g00613' => 'pax', 'Peaxi162Scf00389g00425' => 'pax', 'PGR042G1139' => 'pgr', 'PGR042G3273' => 'pgr', 'PGR102G2180' => 'pgr', 'PGR119G0234' => 'pgr', 'PGR119G0668' => 'pgr', 'PGSC0003DMG400007122' => 'stu', 'PGSC0003DMG400016478' => 'stu', 'PGSC0003DMG400025374' => 'stu', 'PGSC0003DMG400026536' => 'stu', 'Phvul.003G079600' => 'pvu', 'Phvul.005G115600' => 'pvu', 'Phvul.005G127100' => 'pvu', 'Phvul.006G149500' => 'pvu', 'Phvul.006G149600' => 'pvu', 'Phvul.011G071800' => 'pvu', 'Phvul.011G090400' => 'pvu', 'Potri.004G013400' => 'ptr', 'Potri.004G188100' => 'ptr', 'Potri.008G195500' => 'ptr', 'Potri.009G148800' => 'ptr', 'Potri.011G004700' => 'ptr', 'Pp3c17_22810' => 'ppa', 'Pp3c18_4480' => 'ppa', 'Pp3c19_13030' => 'ppa', 'Pp3c1_33620' => 'ppa', 'Pp3c2_9380' => 'ppa', 'PRCOL_00001023' => 'pco', 'Prupe.3G216300' => 'ppe', 'Prupe.4G019500' => 'ppe', 'Prupe.6G092500' => 'ppe', 'Prupe.6G119200' => 'ppe', 'Psat0s1945g0080' => 'psa', 'Psat0s4167g0040' => 'psa', 'Psat1g185800' => 'psa', 'Psat4g006440' => 'psa', 'Psat4g006480' => 'psa', 'Psat4g168120' => 'psa', 'Psat5g255680' => 'psa', 'Psat5g261760' => 'psa', 'Psat7g222120' => 'psa', 'PSO063G7252' => 'pso', 'PSO170G4778' => 'pso', 'PSO210G2249' => 'pso', 'PSO339G2411' => 'pso', 'PSO339G2457' => 'pso', 'PSO339G2854' => 'pso', 'PSO339G4288' => 'pso', 'PSO339G4615' => 'pso', 'PSO384G2796' => 'pso', 'PSO384G2940' => 'pso', 'PSO384G4227' => 'pso', 'PSO478G1425' => 'pso', 'PSO541G3863' => 'pso', 'PSO675G0507' => 'pso', 'PSO782G0338' => 'pso', 'PSO832G0644' => 'pso', 'QL01p013664' => 'qlo', 'QL01p036598' => 'qlo', 'QL05p072984' => 'qlo', 'QL08p005768' => 'qlo', 'QL08p032743' => 'qlo', 'QL93p0073_0439' => 'qlo', 'QL93p0073_0444' => 'qlo', 'RcHm_v2.0_Chr5g0002851' => 'rch', 'RcHm_v2.0_Chr5g0055201' => 'rch', 'RcHm_v2.0_Chr5g0061191' => 'rch', 'RcHm_v2.0_Chr7g0203231' => 'rch', 'Rhsim01G0208100' => 'rsi', 'Rhsim01G0208200' => 'rsi', 'Rhsim02G0106500' => 'rsi', 'Rhsim03G0107900' => 'rsi', 'Rhsim06G0163400' => 'rsi', 'Rhsim13G0105200' => 'rsi', 'Sabra04G0006300' => 'sbr', 'Sabra04G0127000' => 'sbr', 'Sabra08G0148700' => 'sbr', 'Sabra09G0117400' => 'sbr', 'SalBow1G3326' => 'sbo', 'SalBow3G3228' => 'sbo', 'SalBow6G1634' => 'sbo', 'SalBow6G3603' => 'sbo', 'SalBow6G5266' => 'sbo', 'SalBow7G2265' => 'sbo', 'SalBow8G0850' => 'sbo', 'SalBow8G2592' => 'sbo', 'Sc05g0009240' => 'sci', 'Sc12g0002300' => 'sci', 'Sc21g0000100' => 'sci', 'Sc21g0004720' => 'sci', 'Sed0002949' => 'sed', 'Sed0004114' => 'sed', 'Sed0004306' => 'sed', 'Sed0006172' => 'sed', 'Sed0008413' => 'sed', 'Sed0013809' => 'sed', 'Sed0019556' => 'sed', 'SEGI_03570' => 'sgi', 'SEGI_07859' => 'sgi', 'SEGI_15042' => 'sgi', 'SEGI_16263' => 'sgi', 'SEGI_16552' => 'sgi', 'SEGI_24331' => 'sgi', 'SEGI_27316' => 'sgi', 'SEGI_29521' => 'sgi', 'SEGI_41342' => 'sgi', 'SGA_v2.0_scaffold27G11617' => 'sas', 'SGA_v2.0_scaffold316G48428' => 'sas', 'SGA_v2.0_scaffold49G18261' => 'sas', 'SGA_v2.0_scaffold7G03831' => 'sas', 'SGA_v2.0_scaffold93G28359' => 'sas', 'SHI02210' => 'shi', 'SHI06028' => 'shi', 'SHI06321' => 'shi', 'SMO111G0012' => 'smo', 'SMO228G0080' => 'smo', 'SMO356G0756' => 'smo', 'Solyc02g080620.3' => 'sly', 'Solyc06g074530.1' => 'sly', 'Solyc11g066890.1' => 'sly', 'Solyc11g072520.3' => 'sly', 'Sopen02g025330' => 'spe', 'Sopen06g031000' => 'spe', 'Sopen09g008240' => 'spe', 'Sopen09g025210' => 'spe', 'Sopen11g026600' => 'spe', 'Sopen11g030170' => 'spe', 'Sp1g10420' => 'spa', 'Sp3g06570' => 'spa', 'Sp4g10660' => 'spa', 'Sp5g16460' => 'spa', 'Sp6g22710' => 'spa', 'TAR365G0112' => 'tar', 'TAR369G0717' => 'tar', 'TAR374G0976' => 'tar', 'TAR623G1128' => 'tar', 'TAR626G1937' => 'tar', 'TAR627G0123' => 'tar', 'TAR628G0305' => 'tar', 'TAR636G1176' => 'tar', 'TAR636G2442' => 'tar', 'THA.LOC104800556' => 'tha', 'THA.LOC104809501' => 'tha', 'THA.LOC104815126' => 'tha', 'THA.LOC104815732' => 'tha', 'THA.LOC104823528' => 'tha', 'Thecc.02G365600' => 'tca', 'Thecc.06G222300' => 'tca', 'Thecc.09G261800' => 'tca', 'Thecc.09G291400' => 'tca', 'Thhalv10003028m.g' => 'esa', 'Thhalv10007886m.g' => 'esa', 'Thhalv10016085m.g' => 'esa', 'Thhalv10016681m.g' => 'esa', 'Thhalv10020951m.g' => 'esa', 'TPR.G15598' => 'tpr', 'TPR.G29305' => 'tpr', 'TPR.G32395' => 'tpr', 'TPR.G36998' => 'tpr', 'TPR.G4227' => 'tpr', 'TWI18G1433' => 'twi', 'TWI31G0755' => 'twi', 'TWI38G0912' => 'twi', 'TWI75G1097' => 'twi', 'TWI75G1619' => 'twi', 'TWI79G1336' => 'twi', 'unitig_0.g943' => 'ugi', 'unitig_0.g944' => 'ugi', 'unitig_22.g6646' => 'ugi', 'unitig_37.g12681' => 'ugi', 'unitig_8.g3290' => 'ugi', 'vmacro03278' => 'vma', 'vmacro12197' => 'vma', 'vmacro14478' => 'vma', 'vmacro15787' => 'vma', 'vmacro15789' => 'vma', 'vmacro15790' => 'vma', 'vmacro15806' => 'vma', 'vmacro22907' => 'vma', 'vmacro22908' => 'vma', 'vmacro22909' => 'vma', 'vmacro23108' => 'vma', 'VMungo0540G0540' => 'vmu', 'VMungo0540G2468' => 'vmu', 'VMungo1080G0390' => 'vmu', 'VMungo1080G1165' => 'vmu', 'VMungo1127G0170' => 'vmu', 'VMungo1127G2099' => 'vmu', 'VMungo1215G3013' => 'vmu', 'Zm00001eb013110' => 'zma', 'Zm00001eb084260' => 'zma', 'Zm00001eb096110' => 'zma', 'Zm00001eb217510' => 'zma', 'Zm00001eb322550' => 'zma', 'Zm00001eb390770' => 'zma', 'Zm00001eb397170' => 'zma', 'Zm00001eb404610' => 'zma', 'Zm00001eb421790' => 'zma' ) $gf_id = 'HOM05D000911' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000911' ) $data_identifier = 'HOM05D000911' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 16, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 5, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 6, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 8, 'nnu' => (int) 16, 'oeu' => (int) 8, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 5, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 16, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421790' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000911', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27780' => 'bna', 'A03p35380' => 'bna', 'A04p21160' => 'bna', 'A05p40570' => 'bna', 'A06p26900' => 'bna', 'A08p33230' => 'bna', 'A09p65960' => 'bna', 'A10p18290' => 'bna', 'Aa31LG1G12990' => 'aar', 'Aa31LG1G2980' => 'aar', 'Aa31LG4G14320' => 'aar', 'Aa31LG7G11800' => 'aar', 'Aa31sc36G50' => 'aar', 'Aa31sc36G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3721' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5459' => 'aag', 'Actinidia03028' => 'ach', 'Actinidia03753' => 'ach', 'Actinidia04187' => 'ach', 'Actinidia05509' => 'ach', 'Actinidia24180' => 'ach', 'Actinidia26906' => 'ach', 'Actinidia37097' => 'ach', 'Actinidia38249' => 'ach', 'Ah.01g003470' => 'amhyb', 'Ah.01g004580' => 'amhyb', 'Ah.01g014850' => 'amhyb', 'Ah.01g016830' => 'amhyb', 'Ah.14g088000' => 'amhyb', 'AL1G22980' => 'aly', 'AL3G18990' => 'aly', 'AL4G22440' => 'aly', 'AL4G33180' => 'aly', 'AL5G22920' => 'aly', 'AL6G33660' => 'aly', 'AL8G20720' => 'aly', 'Aqoxy1G00935' => 'aox', 'Aqoxy1G02094' => 'aox', 'Aqoxy2G01239' => 'aox', 'Aqoxy4G01870' => 'aox', 'Aqoxy7G00450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.36ZVTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71EM27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5D6C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH3WRE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3NCM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RIM768' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YB5YRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z36GDV' => 'arhy', 'AT1G08250' => 'ath', 'AT1G11790' => 'ath', 'AT2G27820' => 'ath', 'AT3G07630' => 'ath', 'AT3G44720' => 'ath', 'AT5G22630' => 'ath', 'ATR0693G304' => 'atr', 'ATR0794G109' => 'atr', 'ATR0820G120' => 'atr', 'ATR1159G064' => 'atr', 'Atru.chr10.2239' => 'acertr', 'Atru.chr3.3371' => 'acertr', 'Atru.chr6.3202' => 'acertr', 'AUR62006499' => 'cqu', 'AUR62012718' => 'cqu', 'AUR62021938' => 'cqu', 'AUR62023932' => 'cqu', 'AUR62025034' => 'cqu', 'AUR62025035' => 'cqu', 'AUR62038307' => 'cqu', 'AUR62043466' => 'cqu', 'BcaB02g10748' => 'bca', 'BcaB03g13231' => 'bca', 'BcaB03g14689' => 'bca', 'BcaB05g22716' => 'bca', 'BcaB06g28172' => 'bca', 'BcaB08g36413' => 'bca', 'BcaC01g02186' => 'bca', 'BcaC01g04272' => 'bca', 'BcaC02g08080' => 'bca', 'BcaC02g08227' => 'bca', 'BcaC03g13901' => 'bca', 'BcaC04g19593' => 'bca', 'BcaC04g20874' => 'bca', 'BcaC05g29557' => 'bca', 'BcaC06g35505' => 'bca', 'BcaC07g41954' => 'bca', 'BcaC07g41955' => 'bca', 'BcaC07g41956' => 'bca', 'BcaC07g42519' => 'bca', 'BcaC07g42520' => 'bca', 'BcaC07g42523' => 'bca', 'BcaC07g42524' => 'bca', 'BcaC07g42525' => 'bca', 'BcaC08g47480' => 'bca', 'BcaC08g47481' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00530' => 'bna', 'BolC2t07178H' => 'bol', 'BolC3t16567H' => 'bol', 'BolC4t27234H' => 'bol', 'BolC5t29728H' => 'bol', 'BolC5t34622H' => 'bol', 'BolC6t40321H' => 'bol', 'BolC7t42028H' => 'bol', 'BolC8t49125H' => 'bol', 'BolC8t52538H' => 'bol', 'BolC8t52539H' => 'bol', 'BolC9t56681H' => 'bol', 'BolC9t58266H' => 'bol', 'BolSC21t60294H' => 'bol', 'BraA02t05670Z' => 'bra', 'BraA03t12716Z' => 'bra', 'BraA04t17685Z' => 'bra', 'BraA05t22788Z' => 'bra', 'BraA06t24032Z' => 'bra', 'BraA06t25625Z' => 'bra', 'BraA07t27930Z' => 'bra', 'BraA08t35242Z' => 'bra', 'BraA09t38609Z' => 'bra', 'BraA10t43905Z' => 'bra', 'C02p11060' => 'bna', 'C03p42990' => 'bna', 'C03p67310' => 'bna', 'C04p56990' => 'bna', 'C04p58660' => 'bna', 'C05p09890' => 'bna', 'C05p59680' => 'bna', 'C06p19830' => 'bna', 'C06p53040' => 'bna', 'C07p15230' => 'bna', 'C08p50070' => 'bna', 'C08p50090' => 'bna', 'C09p38330' => 'bna', 'C09p53940' => 'bna', 'CAN.G1014.1' => 'can', 'CAN.G644.30' => 'can', 'CAN.G84.47' => 'can', 'CAN.G919.8' => 'can', 'CANSAT54G0113' => 'cansat', 'CANSAT54G1286' => 'cansat', 'CANSAT64G1020' => 'cansat', 'CARHR008080' => 'chi', 'CARHR008090' => 'chi', 'CARHR012130' => 'chi', 'CARHR038390' => 'chi', 'CARHR082330' => 'chi', 'CARHR120520' => 'chi', 'CARHR151470' => 'chi', 'CARHR190950' => 'chi', 'Carub.0001s0760' => 'cru', 'Carub.0001s1146' => 'cru', 'Carub.0003s0721' => 'cru', 'Carub.0004s0858' => 'cru', 'Carub.0005s1040' => 'cru', 'Carub.0006s2035' => 'cru', 'Carub.0015s0005' => 'cru', 'Ca_01607_v3' => 'car', 'Ca_01677_v3' => 'car', 'Ca_06087_v3' => 'car', 'Ca_19238_v3' => 'car', 'Ca_19373_v3' => 'car', 'Ca_21079_v3' => 'car', 'CBR_g54016' => 'cbr', 'CBR_g54018' => 'cbr', 'CBR_g54020' => 'cbr', 'Cc01_g09780' => 'ccan', 'Cc01_g11680' => 'ccan', 'Cc02_g15610' => 'ccan', 'Cc05_g04350' => 'ccan', 'Cc09_g01580' => 'ccan', 'CDE01G0795' => 'cde', 'CDE02G2024' => 'cde', 'CDE02G2260' => 'cde', 'CDE02G4561' => 'cde', 'CDE05G2733' => 'cde', 'CDE05G3422' => 'cde', 'CDE06G2003' => 'cde', 'CDE08G0576' => 'cde', 'CDE09G0048' => 'cde', 'CDE11G0805' => 'cde', 'Cfa003644' => 'cfa', 'Cfa006290' => 'cfa', 'Cfa010080' => 'cfa', 'Cfa011376' => 'cfa', 'Cfa011576' => 'cfa', 'Cfa011577' => 'cfa', 'Cfa014389' => 'cfa', 'Ciclev10006044m.g' => 'ccl', 'Ciclev10006954m.g' => 'ccl', 'Ciclev10015131m.g' => 'ccl', 'Ciclev10015580m.g' => 'ccl', 'Ciclev10028359m.g' => 'ccl', 'Ciclev10028573m.g' => 'ccl', 'CiPaw.03G159300' => 'cil', 'CiPaw.04G115100' => 'cil', 'CiPaw.09G092800' => 'cil', 'CiPaw.10G071800' => 'cil', 'CiPaw.13G105800' => 'cil', 'CiPaw.13G141000' => 'cil', 'CiPaw.14G103400' => 'cil', 'ClCG01G012700' => 'cla', 'ClCG01G012720' => 'cla', 'ClCG01G021920' => 'cla', 'ClCG02G008870' => 'cla', 'ClCG02G020840' => 'cla', 'ClCG02G021930' => 'cla', 'COL.COLO4_19302' => 'col', 'COL.COLO4_25262' => 'col', 'COL.COLO4_31788' => 'col', 'Cpa.g.c34684' => 'cpa', 'Cpa.g.c36520.1' => 'cpa', 'Cpa.g.c45626' => 'cpa', 'Cpa.g.sc121.17' => 'cpa', 'Cpa.g.sc13.22' => 'cpa', 'Cpa.g.sc87.88' => 'cpa', 'Cre06.g261800' => 'cre', 'CsaV3_1G014500' => 'csa', 'CsaV3_1G014510' => 'csa', 'CsaV3_2G034880' => 'csa', 'CsaV3_6G014760' => 'csa', 'CsaV3_6G021500' => 'csa', 'CsaV3_6G048980' => 'csa', 'CSS0002511' => 'camsi', 'CSS0007556' => 'camsi', 'CSS0008532' => 'camsi', 'CSS0009709' => 'camsi', 'CSS0010486' => 'camsi', 'CSS0016768' => 'camsi', 'CSS0023512' => 'camsi', 'CSS0025341' => 'camsi', 'CSS0027999' => 'camsi', 'CSS0028944' => 'camsi', 'CSS0032292' => 'camsi', 'CSS0032464' => 'camsi', 'CSS0037153' => 'camsi', 'CSS0039256' => 'camsi', 'CSS0048392' => 'camsi', 'CSS0050458' => 'camsi', 'DCAR_004224' => 'dca', 'DCAR_006147' => 'dca', 'DCAR_006465' => 'dca', 'DCAR_008159' => 'dca', 'DCAR_012164' => 'dca', 'DCAR_019764' => 'dca', 'Dinv05418' => 'din', 'Dinv10839' => 'din', 'Dinv12521' => 'din', 'Dinv13900' => 'din', 'Dinv29426' => 'din', 'Duzib150G0263' => 'dzi', 'Duzib168G1178' => 'dzi', 'Duzib168G1924' => 'dzi', 'Duzib170G0299' => 'dzi', 'Duzib170G0813' => 'dzi', 'Duzib235G1128' => 'dzi', 'Duzib248G1060' => 'dzi', 'ECA232G1910' => 'eca', 'ECA233G4621' => 'eca', 'ECA238G1216' => 'eca', 'ECA238G1784' => 'eca', 'ECA248G1242' => 'eca', 'EL10Ac8g20071' => 'bvu', 'EL10Ac9g21086' => 'bvu', 'EL10Ac9g22407' => 'bvu', 'EL10Ac9g22412' => 'bvu', 'Eucgr.A01119' => 'egr', 'Eucgr.E04043' => 'egr', 'Eucgr.J00428' => 'egr', 'Eucgr.J00958' => 'egr', 'FAN11G3091' => 'fan', 'FAN11G3651' => 'fan', 'FAN16G2566' => 'fan', 'FAN21G3155' => 'fan', 'FAN21G3400' => 'fan', 'FAN21G3543' => 'fan', 'FAN25G0234' => 'fan', 'FAN25G1422' => 'fan', 'FAN25G3392' => 'fan', 'FvH4_3g01940' => 'fve', 'FvH4_3g29870' => 'fve', 'FvH4_3g33680' => 'fve', 'Glyma.09G004200' => 'gma', 'Glyma.11G151288' => 'gma', 'Glyma.11G189100' => 'gma', 'Glyma.12G072500' => 'gma', 'Glyma.12G085500' => 'gma', 'Glyma.12G181800' => 'gma', 'Glyma.12G193000' => 'gma', 'Glyma.13G309300' => 'gma', 'Glyma.13G319000' => 'gma', 'Glyma.17G012600' => 'gma', 'Gohir.A06G148600' => 'ghi', 'Gohir.A07G115800' => 'ghi', 'Gohir.A08G003600' => 'ghi', 'Gohir.A09G093300' => 'ghi', 'Gohir.A09G105400' => 'ghi', 'Gohir.A09G105500' => 'ghi', 'Gohir.D06G154600' => 'ghi', 'Gohir.D07G120200' => 'ghi', 'Gohir.D08G013900' => 'ghi', 'Gohir.D09G093100' => 'ghi', 'Gohir.D09G102200' => 'ghi', 'Gohir.D09G102300' => 'ghi', 'Gorai.001G129400' => 'gra', 'Gorai.004G008200' => 'gra', 'Gorai.006G109800' => 'gra', 'Gorai.006G119500' => 'gra', 'Gorai.006G121300' => 'gra', 'Gorai.010G180700' => 'gra', 'GSVIVG01012716001' => 'vvi', 'GSVIVG01025118001' => 'vvi', 'GSVIVG01030439001' => 'vvi', 'GSVIVG01031397001' => 'vvi', 'HanXRQChr01g0004201' => 'han', 'HanXRQChr02g0054941' => 'han', 'HanXRQChr05g0141811' => 'han', 'HanXRQChr07g0197751' => 'han', 'HanXRQChr11g0346691' => 'han', 'HanXRQChr13g0396971' => 'han', 'HanXRQChr14g0432951' => 'han', 'HanXRQChr14g0452001' => 'han', 'HanXRQChr15g0496681' => 'han', 'HanXRQChr17g0557491' => 'han', 'HanXRQChr17g0557501' => 'han', 'Haze_06809' => 'cav', 'Haze_12852' => 'cav', 'Haze_15850' => 'cav', 'Haze_23446' => 'cav', 'Haze_23942' => 'cav', 'Haze_23943' => 'cav', 'Hma1.2p1_0091F.1_g046450' => 'hma', 'Hma1.2p1_0128F.1_g059910' => 'hma', 'Hma1.2p1_0249F.1_g102260' => 'hma', 'Hma1.2p1_0453F.1_g156190' => 'hma', 'Hma1.2p1_0695F.1_g204380' => 'hma', 'Hma1.2p1_0749F.1_g212650' => 'hma', 'Hma1.2p1_2156F.1_g315420' => 'hma', 'Hma1.2p1_2686F.1_g326940' => 'hma', 'HPP92_006428' => 'vpl', 'HPP92_012069' => 'vpl', 'HPP92_014129' => 'vpl', 'HPP92_014133' => 'vpl', 'HPP92_017315' => 'vpl', 'HPP92_026445' => 'vpl', 'HPP92_026446' => 'vpl', 'Hund00774' => 'sun', 'Hund07682' => 'sun', 'Hund21413' => 'sun', 'Hund23462' => 'sun', 'Hund23463' => 'sun', 'Lalb_Chr03g0027911' => 'lal', 'Lalb_Chr13g0304271' => 'lal', 'Lalb_Chr19g0137471' => 'lal', 'Lalb_Chr22g0350651' => 'lal', 'Lalb_Chr24g0395151' => 'lal', 'Lj1A1231T40' => 'lonja', 'Lj1A221T48' => 'lonja', 'Lj1C924T12' => 'lonja', 'Lj2C993G6' => 'lonja', 'Lj3g0005790' => 'lja', 'Lj3g0015432' => 'lja', 'Lj3g0017722' => 'lja', 'Lj3g0018497' => 'lja', 'Lj4g0025071' => 'lja', 'Lsat_1_v5_gn_1_129680' => 'lsa', 'Lsat_1_v5_gn_2_25321' => 'lsa', 'Lsat_1_v5_gn_2_95461' => 'lsa', 'Lsat_1_v5_gn_4_159620' => 'lsa', 'Lsat_1_v5_gn_6_41301' => 'lsa', 'Lsat_1_v5_gn_6_74660' => 'lsa', 'Lsat_1_v5_gn_7_11520' => 'lsa', 'Lsat_1_v5_gn_9_67680' => 'lsa', 'Manes.04G008300' => 'mes', 'Manes.04G008400' => 'mes', 'Manes.04G026500' => 'mes', 'Manes.10G135300' => 'mes', 'Manes.11G157300' => 'mes', 'Manes.12G074000' => 'mes', 'Manes.16G006200' => 'mes', 'Manes.17G026400' => 'mes', 'Mapoly0024s0086' => 'mpo', 'Mapoly0024s0087' => 'mpo', 'Mapoly0071s0057' => 'mpo', 'Mapoly0204s0012' => 'mpo', 'MBI04_g37681_MAGBIO' => 'mbi', 'MBI05_g17779_MAGBIO' => 'mbi', 'MBI12_g31184_MAGBIO' => 'mbi', 'MBI17_g11083_MAGBIO' => 'mbi', 'MBI18_g03883_MAGBIO' => 'mbi', 'MBI18_g28940_MAGBIO' => 'mbi', 'MCO01G690' => 'mco', 'MD03G1109900' => 'mdo', 'MD03G1134800' => 'mdo', 'MD05G1348000' => 'mdo', 'MD10G1322400' => 'mdo', 'MD11G1123300' => 'mdo', 'MD11G1157600' => 'mdo', 'Medtr2g084875' => 'mtr', 'Medtr2g088130' => 'mtr', 'Medtr4g055310' => 'mtr', 'Medtr4g061070' => 'mtr', 'Medtr4g132250' => 'mtr', 'MELO3C004795.2' => 'cme', 'MELO3C004797.2' => 'cme', 'MELO3C007396.2' => 'cme', 'MELO3C019277.2' => 'cme', 'MELO3C021449.2' => 'cme', 'MELO3C025736.2' => 'cme', 'Migut.D02175' => 'egut', 'Migut.H01573' => 'egut', 'Migut.M01327' => 'egut', 'Migut.N02513' => 'egut', 'MSTRG.14638' => 'ama', 'MSTRG.18632' => 'ama', 'MSTRG.7203' => 'ama', 'Nitab4.5_0000533g0140' => 'nta', 'Nitab4.5_0000888g0150' => 'nta', 'Nitab4.5_0001453g0040' => 'nta', 'Nitab4.5_0002827g0090' => 'nta', 'Nitab4.5_0003082g0040' => 'nta', 'Nitab4.5_0007799g0040' => 'nta', 'Nitab4.5_0008983g0010' => 'nta', 'Nitab4.5_0009017g0020' => 'nta', 'Nn1g02132' => 'nnu', 'Nn1g03492' => 'nnu', 'Nn1g03493' => 'nnu', 'Nn1g03494' => 'nnu', 'Nn1g07164' => 'nnu', 'Nn1g07291' => 'nnu', 'Nn2g10655' => 'nnu', 'Nn2g11652' => 'nnu', 'Nn2g14008' => 'nnu', 'Nn3g17476' => 'nnu', 'Nn3g17477' => 'nnu', 'Nn4g22370' => 'nnu', 'Nn4g25255' => 'nnu', 'Nn5g27755' => 'nnu', 'Nn6g34260' => 'nnu', 'Nn6g35041' => 'nnu', 'Oeu005924.1' => 'oeu', 'Oeu008383.1' => 'oeu', 'Oeu014928.1' => 'oeu', 'Oeu019889.1' => 'oeu', 'Oeu022271.1' => 'oeu', 'Oeu025271.1' => 'oeu', 'Oeu036302.1' => 'oeu', 'Oeu044100.1' => 'oeu', 'Os01g0528300' => 'osa', 'Os03g0286200' => 'osa', 'Os04g0406600' => 'osa', 'Os07g0512000' => 'osa', 'Os07g0694600' => 'osa', 'Os08g0411000' => 'osa', 'Os09g0565700' => 'osa', 'Os09g0566050' => 'osa', 'Os10g0523700' => 'osa', 'Peaxi162Scf00002g00514' => 'pax', 'Peaxi162Scf00047g01817' => 'pax', 'Peaxi162Scf00114g00001' => 'pax', 'Peaxi162Scf00147g00613' => 'pax', 'Peaxi162Scf00389g00425' => 'pax', 'PGR042G1139' => 'pgr', 'PGR042G3273' => 'pgr', 'PGR102G2180' => 'pgr', 'PGR119G0234' => 'pgr', 'PGR119G0668' => 'pgr', 'PGSC0003DMG400007122' => 'stu', 'PGSC0003DMG400016478' => 'stu', 'PGSC0003DMG400025374' => 'stu', 'PGSC0003DMG400026536' => 'stu', 'Phvul.003G079600' => 'pvu', 'Phvul.005G115600' => 'pvu', 'Phvul.005G127100' => 'pvu', 'Phvul.006G149500' => 'pvu', 'Phvul.006G149600' => 'pvu', 'Phvul.011G071800' => 'pvu', 'Phvul.011G090400' => 'pvu', 'Potri.004G013400' => 'ptr', 'Potri.004G188100' => 'ptr', 'Potri.008G195500' => 'ptr', 'Potri.009G148800' => 'ptr', 'Potri.011G004700' => 'ptr', 'Pp3c17_22810' => 'ppa', 'Pp3c18_4480' => 'ppa', 'Pp3c19_13030' => 'ppa', 'Pp3c1_33620' => 'ppa', 'Pp3c2_9380' => 'ppa', 'PRCOL_00001023' => 'pco', 'Prupe.3G216300' => 'ppe', 'Prupe.4G019500' => 'ppe', 'Prupe.6G092500' => 'ppe', 'Prupe.6G119200' => 'ppe', 'Psat0s1945g0080' => 'psa', 'Psat0s4167g0040' => 'psa', 'Psat1g185800' => 'psa', 'Psat4g006440' => 'psa', 'Psat4g006480' => 'psa', 'Psat4g168120' => 'psa', 'Psat5g255680' => 'psa', 'Psat5g261760' => 'psa', 'Psat7g222120' => 'psa', 'PSO063G7252' => 'pso', 'PSO170G4778' => 'pso', 'PSO210G2249' => 'pso', 'PSO339G2411' => 'pso', 'PSO339G2457' => 'pso', 'PSO339G2854' => 'pso', 'PSO339G4288' => 'pso', 'PSO339G4615' => 'pso', 'PSO384G2796' => 'pso', 'PSO384G2940' => 'pso', 'PSO384G4227' => 'pso', 'PSO478G1425' => 'pso', 'PSO541G3863' => 'pso', 'PSO675G0507' => 'pso', 'PSO782G0338' => 'pso', 'PSO832G0644' => 'pso', 'QL01p013664' => 'qlo', 'QL01p036598' => 'qlo', 'QL05p072984' => 'qlo', 'QL08p005768' => 'qlo', 'QL08p032743' => 'qlo', 'QL93p0073_0439' => 'qlo', 'QL93p0073_0444' => 'qlo', 'RcHm_v2.0_Chr5g0002851' => 'rch', 'RcHm_v2.0_Chr5g0055201' => 'rch', 'RcHm_v2.0_Chr5g0061191' => 'rch', 'RcHm_v2.0_Chr7g0203231' => 'rch', 'Rhsim01G0208100' => 'rsi', 'Rhsim01G0208200' => 'rsi', 'Rhsim02G0106500' => 'rsi', 'Rhsim03G0107900' => 'rsi', 'Rhsim06G0163400' => 'rsi', 'Rhsim13G0105200' => 'rsi', 'Sabra04G0006300' => 'sbr', 'Sabra04G0127000' => 'sbr', 'Sabra08G0148700' => 'sbr', 'Sabra09G0117400' => 'sbr', 'SalBow1G3326' => 'sbo', 'SalBow3G3228' => 'sbo', 'SalBow6G1634' => 'sbo', 'SalBow6G3603' => 'sbo', 'SalBow6G5266' => 'sbo', 'SalBow7G2265' => 'sbo', 'SalBow8G0850' => 'sbo', 'SalBow8G2592' => 'sbo', 'Sc05g0009240' => 'sci', 'Sc12g0002300' => 'sci', 'Sc21g0000100' => 'sci', 'Sc21g0004720' => 'sci', 'Sed0002949' => 'sed', 'Sed0004114' => 'sed', 'Sed0004306' => 'sed', 'Sed0006172' => 'sed', 'Sed0008413' => 'sed', 'Sed0013809' => 'sed', 'Sed0019556' => 'sed', 'SEGI_03570' => 'sgi', 'SEGI_07859' => 'sgi', 'SEGI_15042' => 'sgi', 'SEGI_16263' => 'sgi', 'SEGI_16552' => 'sgi', 'SEGI_24331' => 'sgi', 'SEGI_27316' => 'sgi', 'SEGI_29521' => 'sgi', 'SEGI_41342' => 'sgi', 'SGA_v2.0_scaffold27G11617' => 'sas', 'SGA_v2.0_scaffold316G48428' => 'sas', 'SGA_v2.0_scaffold49G18261' => 'sas', 'SGA_v2.0_scaffold7G03831' => 'sas', 'SGA_v2.0_scaffold93G28359' => 'sas', 'SHI02210' => 'shi', 'SHI06028' => 'shi', 'SHI06321' => 'shi', 'SMO111G0012' => 'smo', 'SMO228G0080' => 'smo', 'SMO356G0756' => 'smo', 'Solyc02g080620.3' => 'sly', 'Solyc06g074530.1' => 'sly', 'Solyc11g066890.1' => 'sly', 'Solyc11g072520.3' => 'sly', 'Sopen02g025330' => 'spe', 'Sopen06g031000' => 'spe', 'Sopen09g008240' => 'spe', 'Sopen09g025210' => 'spe', 'Sopen11g026600' => 'spe', 'Sopen11g030170' => 'spe', 'Sp1g10420' => 'spa', 'Sp3g06570' => 'spa', 'Sp4g10660' => 'spa', 'Sp5g16460' => 'spa', 'Sp6g22710' => 'spa', 'TAR365G0112' => 'tar', 'TAR369G0717' => 'tar', 'TAR374G0976' => 'tar', 'TAR623G1128' => 'tar', 'TAR626G1937' => 'tar', 'TAR627G0123' => 'tar', 'TAR628G0305' => 'tar', 'TAR636G1176' => 'tar', 'TAR636G2442' => 'tar', 'THA.LOC104800556' => 'tha', 'THA.LOC104809501' => 'tha', 'THA.LOC104815126' => 'tha', 'THA.LOC104815732' => 'tha', 'THA.LOC104823528' => 'tha', 'Thecc.02G365600' => 'tca', 'Thecc.06G222300' => 'tca', 'Thecc.09G261800' => 'tca', 'Thecc.09G291400' => 'tca', 'Thhalv10003028m.g' => 'esa', 'Thhalv10007886m.g' => 'esa', 'Thhalv10016085m.g' => 'esa', 'Thhalv10016681m.g' => 'esa', 'Thhalv10020951m.g' => 'esa', 'TPR.G15598' => 'tpr', 'TPR.G29305' => 'tpr', 'TPR.G32395' => 'tpr', 'TPR.G36998' => 'tpr', 'TPR.G4227' => 'tpr', 'TWI18G1433' => 'twi', 'TWI31G0755' => 'twi', 'TWI38G0912' => 'twi', 'TWI75G1097' => 'twi', 'TWI75G1619' => 'twi', 'TWI79G1336' => 'twi', 'unitig_0.g943' => 'ugi', 'unitig_0.g944' => 'ugi', 'unitig_22.g6646' => 'ugi', 'unitig_37.g12681' => 'ugi', 'unitig_8.g3290' => 'ugi', 'vmacro03278' => 'vma', 'vmacro12197' => 'vma', 'vmacro14478' => 'vma', 'vmacro15787' => 'vma', 'vmacro15789' => 'vma', 'vmacro15790' => 'vma', 'vmacro15806' => 'vma', 'vmacro22907' => 'vma', 'vmacro22908' => 'vma', 'vmacro22909' => 'vma', 'vmacro23108' => 'vma', 'VMungo0540G0540' => 'vmu', 'VMungo0540G2468' => 'vmu', 'VMungo1080G0390' => 'vmu', 'VMungo1080G1165' => 'vmu', 'VMungo1127G0170' => 'vmu', 'VMungo1127G2099' => 'vmu', 'VMungo1215G3013' => 'vmu', 'Zm00001eb013110' => 'zma', 'Zm00001eb084260' => 'zma', 'Zm00001eb096110' => 'zma', 'Zm00001eb217510' => 'zma', 'Zm00001eb322550' => 'zma', 'Zm00001eb390770' => 'zma', 'Zm00001eb397170' => 'zma', 'Zm00001eb404610' => 'zma', 'Zm00001eb421790' => 'zma' ), 'gf_id' => 'HOM05D000911', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000911' ), 'data_identifier' => 'HOM05D000911', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000911', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27780' => 'bna', 'A03p35380' => 'bna', 'A04p21160' => 'bna', 'A05p40570' => 'bna', 'A06p26900' => 'bna', 'A08p33230' => 'bna', 'A09p65960' => 'bna', 'A10p18290' => 'bna', 'Aa31LG1G12990' => 'aar', 'Aa31LG1G2980' => 'aar', 'Aa31LG4G14320' => 'aar', 'Aa31LG7G11800' => 'aar', 'Aa31sc36G50' => 'aar', 'Aa31sc36G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3721' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5459' => 'aag', 'Actinidia03028' => 'ach', 'Actinidia03753' => 'ach', 'Actinidia04187' => 'ach', 'Actinidia05509' => 'ach', 'Actinidia24180' => 'ach', 'Actinidia26906' => 'ach', 'Actinidia37097' => 'ach', 'Actinidia38249' => 'ach', 'Ah.01g003470' => 'amhyb', 'Ah.01g004580' => 'amhyb', 'Ah.01g014850' => 'amhyb', 'Ah.01g016830' => 'amhyb', 'Ah.14g088000' => 'amhyb', 'AL1G22980' => 'aly', 'AL3G18990' => 'aly', 'AL4G22440' => 'aly', 'AL4G33180' => 'aly', 'AL5G22920' => 'aly', 'AL6G33660' => 'aly', 'AL8G20720' => 'aly', 'Aqoxy1G00935' => 'aox', 'Aqoxy1G02094' => 'aox', 'Aqoxy2G01239' => 'aox', 'Aqoxy4G01870' => 'aox', 'Aqoxy7G00450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.36ZVTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71EM27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5D6C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH3WRE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3NCM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RIM768' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YB5YRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z36GDV' => 'arhy', 'AT1G08250' => 'ath', 'AT1G11790' => 'ath', 'AT2G27820' => 'ath', 'AT3G07630' => 'ath', 'AT3G44720' => 'ath', 'AT5G22630' => 'ath', 'ATR0693G304' => 'atr', 'ATR0794G109' => 'atr', 'ATR0820G120' => 'atr', 'ATR1159G064' => 'atr', 'Atru.chr10.2239' => 'acertr', 'Atru.chr3.3371' => 'acertr', 'Atru.chr6.3202' => 'acertr', 'AUR62006499' => 'cqu', 'AUR62012718' => 'cqu', 'AUR62021938' => 'cqu', 'AUR62023932' => 'cqu', 'AUR62025034' => 'cqu', 'AUR62025035' => 'cqu', 'AUR62038307' => 'cqu', 'AUR62043466' => 'cqu', 'BcaB02g10748' => 'bca', 'BcaB03g13231' => 'bca', 'BcaB03g14689' => 'bca', 'BcaB05g22716' => 'bca', 'BcaB06g28172' => 'bca', 'BcaB08g36413' => 'bca', 'BcaC01g02186' => 'bca', 'BcaC01g04272' => 'bca', 'BcaC02g08080' => 'bca', 'BcaC02g08227' => 'bca', 'BcaC03g13901' => 'bca', 'BcaC04g19593' => 'bca', 'BcaC04g20874' => 'bca', 'BcaC05g29557' => 'bca', 'BcaC06g35505' => 'bca', 'BcaC07g41954' => 'bca', 'BcaC07g41955' => 'bca', 'BcaC07g41956' => 'bca', 'BcaC07g42519' => 'bca', 'BcaC07g42520' => 'bca', 'BcaC07g42523' => 'bca', 'BcaC07g42524' => 'bca', 'BcaC07g42525' => 'bca', 'BcaC08g47480' => 'bca', 'BcaC08g47481' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00530' => 'bna', 'BolC2t07178H' => 'bol', 'BolC3t16567H' => 'bol', 'BolC4t27234H' => 'bol', 'BolC5t29728H' => 'bol', 'BolC5t34622H' => 'bol', 'BolC6t40321H' => 'bol', 'BolC7t42028H' => 'bol', 'BolC8t49125H' => 'bol', 'BolC8t52538H' => 'bol', 'BolC8t52539H' => 'bol', 'BolC9t56681H' => 'bol', 'BolC9t58266H' => 'bol', 'BolSC21t60294H' => 'bol', 'BraA02t05670Z' => 'bra', 'BraA03t12716Z' => 'bra', 'BraA04t17685Z' => 'bra', 'BraA05t22788Z' => 'bra', 'BraA06t24032Z' => 'bra', 'BraA06t25625Z' => 'bra', 'BraA07t27930Z' => 'bra', 'BraA08t35242Z' => 'bra', 'BraA09t38609Z' => 'bra', 'BraA10t43905Z' => 'bra', 'C02p11060' => 'bna', 'C03p42990' => 'bna', 'C03p67310' => 'bna', 'C04p56990' => 'bna', 'C04p58660' => 'bna', 'C05p09890' => 'bna', 'C05p59680' => 'bna', 'C06p19830' => 'bna', 'C06p53040' => 'bna', 'C07p15230' => 'bna', 'C08p50070' => 'bna', 'C08p50090' => 'bna', 'C09p38330' => 'bna', 'C09p53940' => 'bna', 'CAN.G1014.1' => 'can', 'CAN.G644.30' => 'can', 'CAN.G84.47' => 'can', 'CAN.G919.8' => 'can', 'CANSAT54G0113' => 'cansat', 'CANSAT54G1286' => 'cansat', 'CANSAT64G1020' => 'cansat', 'CARHR008080' => 'chi', 'CARHR008090' => 'chi', 'CARHR012130' => 'chi', 'CARHR038390' => 'chi', 'CARHR082330' => 'chi', 'CARHR120520' => 'chi', 'CARHR151470' => 'chi', 'CARHR190950' => 'chi', 'Carub.0001s0760' => 'cru', 'Carub.0001s1146' => 'cru', 'Carub.0003s0721' => 'cru', 'Carub.0004s0858' => 'cru', 'Carub.0005s1040' => 'cru', 'Carub.0006s2035' => 'cru', 'Carub.0015s0005' => 'cru', 'Ca_01607_v3' => 'car', 'Ca_01677_v3' => 'car', 'Ca_06087_v3' => 'car', 'Ca_19238_v3' => 'car', 'Ca_19373_v3' => 'car', 'Ca_21079_v3' => 'car', 'CBR_g54016' => 'cbr', 'CBR_g54018' => 'cbr', 'CBR_g54020' => 'cbr', 'Cc01_g09780' => 'ccan', 'Cc01_g11680' => 'ccan', 'Cc02_g15610' => 'ccan', 'Cc05_g04350' => 'ccan', 'Cc09_g01580' => 'ccan', 'CDE01G0795' => 'cde', 'CDE02G2024' => 'cde', 'CDE02G2260' => 'cde', 'CDE02G4561' => 'cde', 'CDE05G2733' => 'cde', 'CDE05G3422' => 'cde', 'CDE06G2003' => 'cde', 'CDE08G0576' => 'cde', 'CDE09G0048' => 'cde', 'CDE11G0805' => 'cde', 'Cfa003644' => 'cfa', 'Cfa006290' => 'cfa', 'Cfa010080' => 'cfa', 'Cfa011376' => 'cfa', 'Cfa011576' => 'cfa', 'Cfa011577' => 'cfa', 'Cfa014389' => 'cfa', 'Ciclev10006044m.g' => 'ccl', 'Ciclev10006954m.g' => 'ccl', 'Ciclev10015131m.g' => 'ccl', 'Ciclev10015580m.g' => 'ccl', 'Ciclev10028359m.g' => 'ccl', 'Ciclev10028573m.g' => 'ccl', 'CiPaw.03G159300' => 'cil', 'CiPaw.04G115100' => 'cil', 'CiPaw.09G092800' => 'cil', 'CiPaw.10G071800' => 'cil', 'CiPaw.13G105800' => 'cil', 'CiPaw.13G141000' => 'cil', 'CiPaw.14G103400' => 'cil', 'ClCG01G012700' => 'cla', 'ClCG01G012720' => 'cla', 'ClCG01G021920' => 'cla', 'ClCG02G008870' => 'cla', 'ClCG02G020840' => 'cla', 'ClCG02G021930' => 'cla', 'COL.COLO4_19302' => 'col', 'COL.COLO4_25262' => 'col', 'COL.COLO4_31788' => 'col', 'Cpa.g.c34684' => 'cpa', 'Cpa.g.c36520.1' => 'cpa', 'Cpa.g.c45626' => 'cpa', 'Cpa.g.sc121.17' => 'cpa', 'Cpa.g.sc13.22' => 'cpa', 'Cpa.g.sc87.88' => 'cpa', 'Cre06.g261800' => 'cre', 'CsaV3_1G014500' => 'csa', 'CsaV3_1G014510' => 'csa', 'CsaV3_2G034880' => 'csa', 'CsaV3_6G014760' => 'csa', 'CsaV3_6G021500' => 'csa', 'CsaV3_6G048980' => 'csa', 'CSS0002511' => 'camsi', 'CSS0007556' => 'camsi', 'CSS0008532' => 'camsi', 'CSS0009709' => 'camsi', 'CSS0010486' => 'camsi', 'CSS0016768' => 'camsi', 'CSS0023512' => 'camsi', 'CSS0025341' => 'camsi', 'CSS0027999' => 'camsi', 'CSS0028944' => 'camsi', 'CSS0032292' => 'camsi', 'CSS0032464' => 'camsi', 'CSS0037153' => 'camsi', 'CSS0039256' => 'camsi', 'CSS0048392' => 'camsi', 'CSS0050458' => 'camsi', 'DCAR_004224' => 'dca', 'DCAR_006147' => 'dca', 'DCAR_006465' => 'dca', 'DCAR_008159' => 'dca', 'DCAR_012164' => 'dca', 'DCAR_019764' => 'dca', 'Dinv05418' => 'din', 'Dinv10839' => 'din', 'Dinv12521' => 'din', 'Dinv13900' => 'din', 'Dinv29426' => 'din', 'Duzib150G0263' => 'dzi', 'Duzib168G1178' => 'dzi', 'Duzib168G1924' => 'dzi', 'Duzib170G0299' => 'dzi', 'Duzib170G0813' => 'dzi', 'Duzib235G1128' => 'dzi', 'Duzib248G1060' => 'dzi', 'ECA232G1910' => 'eca', 'ECA233G4621' => 'eca', 'ECA238G1216' => 'eca', 'ECA238G1784' => 'eca', 'ECA248G1242' => 'eca', 'EL10Ac8g20071' => 'bvu', 'EL10Ac9g21086' => 'bvu', 'EL10Ac9g22407' => 'bvu', 'EL10Ac9g22412' => 'bvu', 'Eucgr.A01119' => 'egr', 'Eucgr.E04043' => 'egr', 'Eucgr.J00428' => 'egr', 'Eucgr.J00958' => 'egr', 'FAN11G3091' => 'fan', 'FAN11G3651' => 'fan', 'FAN16G2566' => 'fan', 'FAN21G3155' => 'fan', 'FAN21G3400' => 'fan', 'FAN21G3543' => 'fan', 'FAN25G0234' => 'fan', 'FAN25G1422' => 'fan', 'FAN25G3392' => 'fan', 'FvH4_3g01940' => 'fve', 'FvH4_3g29870' => 'fve', 'FvH4_3g33680' => 'fve', 'Glyma.09G004200' => 'gma', 'Glyma.11G151288' => 'gma', 'Glyma.11G189100' => 'gma', 'Glyma.12G072500' => 'gma', 'Glyma.12G085500' => 'gma', 'Glyma.12G181800' => 'gma', 'Glyma.12G193000' => 'gma', 'Glyma.13G309300' => 'gma', 'Glyma.13G319000' => 'gma', 'Glyma.17G012600' => 'gma', 'Gohir.A06G148600' => 'ghi', 'Gohir.A07G115800' => 'ghi', 'Gohir.A08G003600' => 'ghi', 'Gohir.A09G093300' => 'ghi', 'Gohir.A09G105400' => 'ghi', 'Gohir.A09G105500' => 'ghi', 'Gohir.D06G154600' => 'ghi', 'Gohir.D07G120200' => 'ghi', 'Gohir.D08G013900' => 'ghi', 'Gohir.D09G093100' => 'ghi', 'Gohir.D09G102200' => 'ghi', 'Gohir.D09G102300' => 'ghi', 'Gorai.001G129400' => 'gra', 'Gorai.004G008200' => 'gra', 'Gorai.006G109800' => 'gra', 'Gorai.006G119500' => 'gra', 'Gorai.006G121300' => 'gra', 'Gorai.010G180700' => 'gra', 'GSVIVG01012716001' => 'vvi', 'GSVIVG01025118001' => 'vvi', 'GSVIVG01030439001' => 'vvi', 'GSVIVG01031397001' => 'vvi', 'HanXRQChr01g0004201' => 'han', 'HanXRQChr02g0054941' => 'han', 'HanXRQChr05g0141811' => 'han', 'HanXRQChr07g0197751' => 'han', 'HanXRQChr11g0346691' => 'han', 'HanXRQChr13g0396971' => 'han', 'HanXRQChr14g0432951' => 'han', 'HanXRQChr14g0452001' => 'han', 'HanXRQChr15g0496681' => 'han', 'HanXRQChr17g0557491' => 'han', 'HanXRQChr17g0557501' => 'han', 'Haze_06809' => 'cav', 'Haze_12852' => 'cav', 'Haze_15850' => 'cav', 'Haze_23446' => 'cav', 'Haze_23942' => 'cav', 'Haze_23943' => 'cav', 'Hma1.2p1_0091F.1_g046450' => 'hma', 'Hma1.2p1_0128F.1_g059910' => 'hma', 'Hma1.2p1_0249F.1_g102260' => 'hma', 'Hma1.2p1_0453F.1_g156190' => 'hma', 'Hma1.2p1_0695F.1_g204380' => 'hma', 'Hma1.2p1_0749F.1_g212650' => 'hma', 'Hma1.2p1_2156F.1_g315420' => 'hma', 'Hma1.2p1_2686F.1_g326940' => 'hma', 'HPP92_006428' => 'vpl', 'HPP92_012069' => 'vpl', 'HPP92_014129' => 'vpl', 'HPP92_014133' => 'vpl', 'HPP92_017315' => 'vpl', 'HPP92_026445' => 'vpl', 'HPP92_026446' => 'vpl', 'Hund00774' => 'sun', 'Hund07682' => 'sun', 'Hund21413' => 'sun', 'Hund23462' => 'sun', 'Hund23463' => 'sun', 'Lalb_Chr03g0027911' => 'lal', 'Lalb_Chr13g0304271' => 'lal', 'Lalb_Chr19g0137471' => 'lal', 'Lalb_Chr22g0350651' => 'lal', 'Lalb_Chr24g0395151' => 'lal', 'Lj1A1231T40' => 'lonja', 'Lj1A221T48' => 'lonja', 'Lj1C924T12' => 'lonja', 'Lj2C993G6' => 'lonja', 'Lj3g0005790' => 'lja', 'Lj3g0015432' => 'lja', 'Lj3g0017722' => 'lja', 'Lj3g0018497' => 'lja', 'Lj4g0025071' => 'lja', 'Lsat_1_v5_gn_1_129680' => 'lsa', 'Lsat_1_v5_gn_2_25321' => 'lsa', 'Lsat_1_v5_gn_2_95461' => 'lsa', 'Lsat_1_v5_gn_4_159620' => 'lsa', 'Lsat_1_v5_gn_6_41301' => 'lsa', 'Lsat_1_v5_gn_6_74660' => 'lsa', 'Lsat_1_v5_gn_7_11520' => 'lsa', 'Lsat_1_v5_gn_9_67680' => 'lsa', 'Manes.04G008300' => 'mes', 'Manes.04G008400' => 'mes', 'Manes.04G026500' => 'mes', 'Manes.10G135300' => 'mes', 'Manes.11G157300' => 'mes', 'Manes.12G074000' => 'mes', 'Manes.16G006200' => 'mes', 'Manes.17G026400' => 'mes', 'Mapoly0024s0086' => 'mpo', 'Mapoly0024s0087' => 'mpo', 'Mapoly0071s0057' => 'mpo', 'Mapoly0204s0012' => 'mpo', 'MBI04_g37681_MAGBIO' => 'mbi', 'MBI05_g17779_MAGBIO' => 'mbi', 'MBI12_g31184_MAGBIO' => 'mbi', 'MBI17_g11083_MAGBIO' => 'mbi', 'MBI18_g03883_MAGBIO' => 'mbi', 'MBI18_g28940_MAGBIO' => 'mbi', 'MCO01G690' => 'mco', 'MD03G1109900' => 'mdo', 'MD03G1134800' => 'mdo', 'MD05G1348000' => 'mdo', 'MD10G1322400' => 'mdo', 'MD11G1123300' => 'mdo', 'MD11G1157600' => 'mdo', 'Medtr2g084875' => 'mtr', 'Medtr2g088130' => 'mtr', 'Medtr4g055310' => 'mtr', 'Medtr4g061070' => 'mtr', 'Medtr4g132250' => 'mtr', 'MELO3C004795.2' => 'cme', 'MELO3C004797.2' => 'cme', 'MELO3C007396.2' => 'cme', 'MELO3C019277.2' => 'cme', 'MELO3C021449.2' => 'cme', 'MELO3C025736.2' => 'cme', 'Migut.D02175' => 'egut', 'Migut.H01573' => 'egut', 'Migut.M01327' => 'egut', 'Migut.N02513' => 'egut', 'MSTRG.14638' => 'ama', 'MSTRG.18632' => 'ama', 'MSTRG.7203' => 'ama', 'Nitab4.5_0000533g0140' => 'nta', 'Nitab4.5_0000888g0150' => 'nta', 'Nitab4.5_0001453g0040' => 'nta', 'Nitab4.5_0002827g0090' => 'nta', 'Nitab4.5_0003082g0040' => 'nta', 'Nitab4.5_0007799g0040' => 'nta', 'Nitab4.5_0008983g0010' => 'nta', 'Nitab4.5_0009017g0020' => 'nta', 'Nn1g02132' => 'nnu', 'Nn1g03492' => 'nnu', 'Nn1g03493' => 'nnu', 'Nn1g03494' => 'nnu', 'Nn1g07164' => 'nnu', 'Nn1g07291' => 'nnu', 'Nn2g10655' => 'nnu', 'Nn2g11652' => 'nnu', 'Nn2g14008' => 'nnu', 'Nn3g17476' => 'nnu', 'Nn3g17477' => 'nnu', 'Nn4g22370' => 'nnu', 'Nn4g25255' => 'nnu', 'Nn5g27755' => 'nnu', 'Nn6g34260' => 'nnu', 'Nn6g35041' => 'nnu', 'Oeu005924.1' => 'oeu', 'Oeu008383.1' => 'oeu', 'Oeu014928.1' => 'oeu', 'Oeu019889.1' => 'oeu', 'Oeu022271.1' => 'oeu', 'Oeu025271.1' => 'oeu', 'Oeu036302.1' => 'oeu', 'Oeu044100.1' => 'oeu', 'Os01g0528300' => 'osa', 'Os03g0286200' => 'osa', 'Os04g0406600' => 'osa', 'Os07g0512000' => 'osa', 'Os07g0694600' => 'osa', 'Os08g0411000' => 'osa', 'Os09g0565700' => 'osa', 'Os09g0566050' => 'osa', 'Os10g0523700' => 'osa', 'Peaxi162Scf00002g00514' => 'pax', 'Peaxi162Scf00047g01817' => 'pax', 'Peaxi162Scf00114g00001' => 'pax', 'Peaxi162Scf00147g00613' => 'pax', 'Peaxi162Scf00389g00425' => 'pax', 'PGR042G1139' => 'pgr', 'PGR042G3273' => 'pgr', 'PGR102G2180' => 'pgr', 'PGR119G0234' => 'pgr', 'PGR119G0668' => 'pgr', 'PGSC0003DMG400007122' => 'stu', 'PGSC0003DMG400016478' => 'stu', 'PGSC0003DMG400025374' => 'stu', 'PGSC0003DMG400026536' => 'stu', 'Phvul.003G079600' => 'pvu', 'Phvul.005G115600' => 'pvu', 'Phvul.005G127100' => 'pvu', 'Phvul.006G149500' => 'pvu', 'Phvul.006G149600' => 'pvu', 'Phvul.011G071800' => 'pvu', 'Phvul.011G090400' => 'pvu', 'Potri.004G013400' => 'ptr', 'Potri.004G188100' => 'ptr', 'Potri.008G195500' => 'ptr', 'Potri.009G148800' => 'ptr', 'Potri.011G004700' => 'ptr', 'Pp3c17_22810' => 'ppa', 'Pp3c18_4480' => 'ppa', 'Pp3c19_13030' => 'ppa', 'Pp3c1_33620' => 'ppa', 'Pp3c2_9380' => 'ppa', 'PRCOL_00001023' => 'pco', 'Prupe.3G216300' => 'ppe', 'Prupe.4G019500' => 'ppe', 'Prupe.6G092500' => 'ppe', 'Prupe.6G119200' => 'ppe', 'Psat0s1945g0080' => 'psa', 'Psat0s4167g0040' => 'psa', 'Psat1g185800' => 'psa', 'Psat4g006440' => 'psa', 'Psat4g006480' => 'psa', 'Psat4g168120' => 'psa', 'Psat5g255680' => 'psa', 'Psat5g261760' => 'psa', 'Psat7g222120' => 'psa', 'PSO063G7252' => 'pso', 'PSO170G4778' => 'pso', 'PSO210G2249' => 'pso', 'PSO339G2411' => 'pso', 'PSO339G2457' => 'pso', 'PSO339G2854' => 'pso', 'PSO339G4288' => 'pso', 'PSO339G4615' => 'pso', 'PSO384G2796' => 'pso', 'PSO384G2940' => 'pso', 'PSO384G4227' => 'pso', 'PSO478G1425' => 'pso', 'PSO541G3863' => 'pso', 'PSO675G0507' => 'pso', 'PSO782G0338' => 'pso', 'PSO832G0644' => 'pso', 'QL01p013664' => 'qlo', 'QL01p036598' => 'qlo', 'QL05p072984' => 'qlo', 'QL08p005768' => 'qlo', 'QL08p032743' => 'qlo', 'QL93p0073_0439' => 'qlo', 'QL93p0073_0444' => 'qlo', 'RcHm_v2.0_Chr5g0002851' => 'rch', 'RcHm_v2.0_Chr5g0055201' => 'rch', 'RcHm_v2.0_Chr5g0061191' => 'rch', 'RcHm_v2.0_Chr7g0203231' => 'rch', 'Rhsim01G0208100' => 'rsi', 'Rhsim01G0208200' => 'rsi', 'Rhsim02G0106500' => 'rsi', 'Rhsim03G0107900' => 'rsi', 'Rhsim06G0163400' => 'rsi', 'Rhsim13G0105200' => 'rsi', 'Sabra04G0006300' => 'sbr', 'Sabra04G0127000' => 'sbr', 'Sabra08G0148700' => 'sbr', 'Sabra09G0117400' => 'sbr', 'SalBow1G3326' => 'sbo', 'SalBow3G3228' => 'sbo', 'SalBow6G1634' => 'sbo', 'SalBow6G3603' => 'sbo', 'SalBow6G5266' => 'sbo', 'SalBow7G2265' => 'sbo', 'SalBow8G0850' => 'sbo', 'SalBow8G2592' => 'sbo', 'Sc05g0009240' => 'sci', 'Sc12g0002300' => 'sci', 'Sc21g0000100' => 'sci', 'Sc21g0004720' => 'sci', 'Sed0002949' => 'sed', 'Sed0004114' => 'sed', 'Sed0004306' => 'sed', 'Sed0006172' => 'sed', 'Sed0008413' => 'sed', 'Sed0013809' => 'sed', 'Sed0019556' => 'sed', 'SEGI_03570' => 'sgi', 'SEGI_07859' => 'sgi', 'SEGI_15042' => 'sgi', 'SEGI_16263' => 'sgi', 'SEGI_16552' => 'sgi', 'SEGI_24331' => 'sgi', 'SEGI_27316' => 'sgi', 'SEGI_29521' => 'sgi', 'SEGI_41342' => 'sgi', 'SGA_v2.0_scaffold27G11617' => 'sas', 'SGA_v2.0_scaffold316G48428' => 'sas', 'SGA_v2.0_scaffold49G18261' => 'sas', 'SGA_v2.0_scaffold7G03831' => 'sas', 'SGA_v2.0_scaffold93G28359' => 'sas', 'SHI02210' => 'shi', 'SHI06028' => 'shi', 'SHI06321' => 'shi', 'SMO111G0012' => 'smo', 'SMO228G0080' => 'smo', 'SMO356G0756' => 'smo', 'Solyc02g080620.3' => 'sly', 'Solyc06g074530.1' => 'sly', 'Solyc11g066890.1' => 'sly', 'Solyc11g072520.3' => 'sly', 'Sopen02g025330' => 'spe', 'Sopen06g031000' => 'spe', 'Sopen09g008240' => 'spe', 'Sopen09g025210' => 'spe', 'Sopen11g026600' => 'spe', 'Sopen11g030170' => 'spe', 'Sp1g10420' => 'spa', 'Sp3g06570' => 'spa', 'Sp4g10660' => 'spa', 'Sp5g16460' => 'spa', 'Sp6g22710' => 'spa', 'TAR365G0112' => 'tar', 'TAR369G0717' => 'tar', 'TAR374G0976' => 'tar', 'TAR623G1128' => 'tar', 'TAR626G1937' => 'tar', 'TAR627G0123' => 'tar', 'TAR628G0305' => 'tar', 'TAR636G1176' => 'tar', 'TAR636G2442' => 'tar', 'THA.LOC104800556' => 'tha', 'THA.LOC104809501' => 'tha', 'THA.LOC104815126' => 'tha', 'THA.LOC104815732' => 'tha', 'THA.LOC104823528' => 'tha', 'Thecc.02G365600' => 'tca', 'Thecc.06G222300' => 'tca', 'Thecc.09G261800' => 'tca', 'Thecc.09G291400' => 'tca', 'Thhalv10003028m.g' => 'esa', 'Thhalv10007886m.g' => 'esa', 'Thhalv10016085m.g' => 'esa', 'Thhalv10016681m.g' => 'esa', 'Thhalv10020951m.g' => 'esa', 'TPR.G15598' => 'tpr', 'TPR.G29305' => 'tpr', 'TPR.G32395' => 'tpr', 'TPR.G36998' => 'tpr', 'TPR.G4227' => 'tpr', 'TWI18G1433' => 'twi', 'TWI31G0755' => 'twi', 'TWI38G0912' => 'twi', 'TWI75G1097' => 'twi', 'TWI75G1619' => 'twi', 'TWI79G1336' => 'twi', 'unitig_0.g943' => 'ugi', 'unitig_0.g944' => 'ugi', 'unitig_22.g6646' => 'ugi', 'unitig_37.g12681' => 'ugi', 'unitig_8.g3290' => 'ugi', 'vmacro03278' => 'vma', 'vmacro12197' => 'vma', 'vmacro14478' => 'vma', 'vmacro15787' => 'vma', 'vmacro15789' => 'vma', 'vmacro15790' => 'vma', 'vmacro15806' => 'vma', 'vmacro22907' => 'vma', 'vmacro22908' => 'vma', 'vmacro22909' => 'vma', 'vmacro23108' => 'vma', 'VMungo0540G0540' => 'vmu', 'VMungo0540G2468' => 'vmu', 'VMungo1080G0390' => 'vmu', 'VMungo1080G1165' => 'vmu', 'VMungo1127G0170' => 'vmu', 'VMungo1127G2099' => 'vmu', 'VMungo1215G3013' => 'vmu', 'Zm00001eb013110' => 'zma', 'Zm00001eb084260' => 'zma', 'Zm00001eb096110' => 'zma', 'Zm00001eb217510' => 'zma', 'Zm00001eb322550' => 'zma', 'Zm00001eb390770' => 'zma', 'Zm00001eb397170' => 'zma', 'Zm00001eb404610' => 'zma', 'Zm00001eb421790' => 'zma' ) $gf_id = 'HOM05D000911' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000911' ) $data_identifier = 'HOM05D000911' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 16, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 5, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 6, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 8, 'nnu' => (int) 16, 'oeu' => (int) 8, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 5, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 16, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421790' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000911', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27780' => 'bna', 'A03p35380' => 'bna', 'A04p21160' => 'bna', 'A05p40570' => 'bna', 'A06p26900' => 'bna', 'A08p33230' => 'bna', 'A09p65960' => 'bna', 'A10p18290' => 'bna', 'Aa31LG1G12990' => 'aar', 'Aa31LG1G2980' => 'aar', 'Aa31LG4G14320' => 'aar', 'Aa31LG7G11800' => 'aar', 'Aa31sc36G50' => 'aar', 'Aa31sc36G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3721' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5459' => 'aag', 'Actinidia03028' => 'ach', 'Actinidia03753' => 'ach', 'Actinidia04187' => 'ach', 'Actinidia05509' => 'ach', 'Actinidia24180' => 'ach', 'Actinidia26906' => 'ach', 'Actinidia37097' => 'ach', 'Actinidia38249' => 'ach', 'Ah.01g003470' => 'amhyb', 'Ah.01g004580' => 'amhyb', 'Ah.01g014850' => 'amhyb', 'Ah.01g016830' => 'amhyb', 'Ah.14g088000' => 'amhyb', 'AL1G22980' => 'aly', 'AL3G18990' => 'aly', 'AL4G22440' => 'aly', 'AL4G33180' => 'aly', 'AL5G22920' => 'aly', 'AL6G33660' => 'aly', 'AL8G20720' => 'aly', 'Aqoxy1G00935' => 'aox', 'Aqoxy1G02094' => 'aox', 'Aqoxy2G01239' => 'aox', 'Aqoxy4G01870' => 'aox', 'Aqoxy7G00450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.36ZVTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71EM27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5D6C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH3WRE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3NCM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RIM768' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YB5YRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z36GDV' => 'arhy', 'AT1G08250' => 'ath', 'AT1G11790' => 'ath', 'AT2G27820' => 'ath', 'AT3G07630' => 'ath', 'AT3G44720' => 'ath', 'AT5G22630' => 'ath', 'ATR0693G304' => 'atr', 'ATR0794G109' => 'atr', 'ATR0820G120' => 'atr', 'ATR1159G064' => 'atr', 'Atru.chr10.2239' => 'acertr', 'Atru.chr3.3371' => 'acertr', 'Atru.chr6.3202' => 'acertr', 'AUR62006499' => 'cqu', 'AUR62012718' => 'cqu', 'AUR62021938' => 'cqu', 'AUR62023932' => 'cqu', 'AUR62025034' => 'cqu', 'AUR62025035' => 'cqu', 'AUR62038307' => 'cqu', 'AUR62043466' => 'cqu', 'BcaB02g10748' => 'bca', 'BcaB03g13231' => 'bca', 'BcaB03g14689' => 'bca', 'BcaB05g22716' => 'bca', 'BcaB06g28172' => 'bca', 'BcaB08g36413' => 'bca', 'BcaC01g02186' => 'bca', 'BcaC01g04272' => 'bca', 'BcaC02g08080' => 'bca', 'BcaC02g08227' => 'bca', 'BcaC03g13901' => 'bca', 'BcaC04g19593' => 'bca', 'BcaC04g20874' => 'bca', 'BcaC05g29557' => 'bca', 'BcaC06g35505' => 'bca', 'BcaC07g41954' => 'bca', 'BcaC07g41955' => 'bca', 'BcaC07g41956' => 'bca', 'BcaC07g42519' => 'bca', 'BcaC07g42520' => 'bca', 'BcaC07g42523' => 'bca', 'BcaC07g42524' => 'bca', 'BcaC07g42525' => 'bca', 'BcaC08g47480' => 'bca', 'BcaC08g47481' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00530' => 'bna', 'BolC2t07178H' => 'bol', 'BolC3t16567H' => 'bol', 'BolC4t27234H' => 'bol', 'BolC5t29728H' => 'bol', 'BolC5t34622H' => 'bol', 'BolC6t40321H' => 'bol', 'BolC7t42028H' => 'bol', 'BolC8t49125H' => 'bol', 'BolC8t52538H' => 'bol', 'BolC8t52539H' => 'bol', 'BolC9t56681H' => 'bol', 'BolC9t58266H' => 'bol', 'BolSC21t60294H' => 'bol', 'BraA02t05670Z' => 'bra', 'BraA03t12716Z' => 'bra', 'BraA04t17685Z' => 'bra', 'BraA05t22788Z' => 'bra', 'BraA06t24032Z' => 'bra', 'BraA06t25625Z' => 'bra', 'BraA07t27930Z' => 'bra', 'BraA08t35242Z' => 'bra', 'BraA09t38609Z' => 'bra', 'BraA10t43905Z' => 'bra', 'C02p11060' => 'bna', 'C03p42990' => 'bna', 'C03p67310' => 'bna', 'C04p56990' => 'bna', 'C04p58660' => 'bna', 'C05p09890' => 'bna', 'C05p59680' => 'bna', 'C06p19830' => 'bna', 'C06p53040' => 'bna', 'C07p15230' => 'bna', 'C08p50070' => 'bna', 'C08p50090' => 'bna', 'C09p38330' => 'bna', 'C09p53940' => 'bna', 'CAN.G1014.1' => 'can', 'CAN.G644.30' => 'can', 'CAN.G84.47' => 'can', 'CAN.G919.8' => 'can', 'CANSAT54G0113' => 'cansat', 'CANSAT54G1286' => 'cansat', 'CANSAT64G1020' => 'cansat', 'CARHR008080' => 'chi', 'CARHR008090' => 'chi', 'CARHR012130' => 'chi', 'CARHR038390' => 'chi', 'CARHR082330' => 'chi', 'CARHR120520' => 'chi', 'CARHR151470' => 'chi', 'CARHR190950' => 'chi', 'Carub.0001s0760' => 'cru', 'Carub.0001s1146' => 'cru', 'Carub.0003s0721' => 'cru', 'Carub.0004s0858' => 'cru', 'Carub.0005s1040' => 'cru', 'Carub.0006s2035' => 'cru', 'Carub.0015s0005' => 'cru', 'Ca_01607_v3' => 'car', 'Ca_01677_v3' => 'car', 'Ca_06087_v3' => 'car', 'Ca_19238_v3' => 'car', 'Ca_19373_v3' => 'car', 'Ca_21079_v3' => 'car', 'CBR_g54016' => 'cbr', 'CBR_g54018' => 'cbr', 'CBR_g54020' => 'cbr', 'Cc01_g09780' => 'ccan', 'Cc01_g11680' => 'ccan', 'Cc02_g15610' => 'ccan', 'Cc05_g04350' => 'ccan', 'Cc09_g01580' => 'ccan', 'CDE01G0795' => 'cde', 'CDE02G2024' => 'cde', 'CDE02G2260' => 'cde', 'CDE02G4561' => 'cde', 'CDE05G2733' => 'cde', 'CDE05G3422' => 'cde', 'CDE06G2003' => 'cde', 'CDE08G0576' => 'cde', 'CDE09G0048' => 'cde', 'CDE11G0805' => 'cde', 'Cfa003644' => 'cfa', 'Cfa006290' => 'cfa', 'Cfa010080' => 'cfa', 'Cfa011376' => 'cfa', 'Cfa011576' => 'cfa', 'Cfa011577' => 'cfa', 'Cfa014389' => 'cfa', 'Ciclev10006044m.g' => 'ccl', 'Ciclev10006954m.g' => 'ccl', 'Ciclev10015131m.g' => 'ccl', 'Ciclev10015580m.g' => 'ccl', 'Ciclev10028359m.g' => 'ccl', 'Ciclev10028573m.g' => 'ccl', 'CiPaw.03G159300' => 'cil', 'CiPaw.04G115100' => 'cil', 'CiPaw.09G092800' => 'cil', 'CiPaw.10G071800' => 'cil', 'CiPaw.13G105800' => 'cil', 'CiPaw.13G141000' => 'cil', 'CiPaw.14G103400' => 'cil', 'ClCG01G012700' => 'cla', 'ClCG01G012720' => 'cla', 'ClCG01G021920' => 'cla', 'ClCG02G008870' => 'cla', 'ClCG02G020840' => 'cla', 'ClCG02G021930' => 'cla', 'COL.COLO4_19302' => 'col', 'COL.COLO4_25262' => 'col', 'COL.COLO4_31788' => 'col', 'Cpa.g.c34684' => 'cpa', 'Cpa.g.c36520.1' => 'cpa', 'Cpa.g.c45626' => 'cpa', 'Cpa.g.sc121.17' => 'cpa', 'Cpa.g.sc13.22' => 'cpa', 'Cpa.g.sc87.88' => 'cpa', 'Cre06.g261800' => 'cre', 'CsaV3_1G014500' => 'csa', 'CsaV3_1G014510' => 'csa', 'CsaV3_2G034880' => 'csa', 'CsaV3_6G014760' => 'csa', 'CsaV3_6G021500' => 'csa', 'CsaV3_6G048980' => 'csa', 'CSS0002511' => 'camsi', 'CSS0007556' => 'camsi', 'CSS0008532' => 'camsi', 'CSS0009709' => 'camsi', 'CSS0010486' => 'camsi', 'CSS0016768' => 'camsi', 'CSS0023512' => 'camsi', 'CSS0025341' => 'camsi', 'CSS0027999' => 'camsi', 'CSS0028944' => 'camsi', 'CSS0032292' => 'camsi', 'CSS0032464' => 'camsi', 'CSS0037153' => 'camsi', 'CSS0039256' => 'camsi', 'CSS0048392' => 'camsi', 'CSS0050458' => 'camsi', 'DCAR_004224' => 'dca', 'DCAR_006147' => 'dca', 'DCAR_006465' => 'dca', 'DCAR_008159' => 'dca', 'DCAR_012164' => 'dca', 'DCAR_019764' => 'dca', 'Dinv05418' => 'din', 'Dinv10839' => 'din', 'Dinv12521' => 'din', 'Dinv13900' => 'din', 'Dinv29426' => 'din', 'Duzib150G0263' => 'dzi', 'Duzib168G1178' => 'dzi', 'Duzib168G1924' => 'dzi', 'Duzib170G0299' => 'dzi', 'Duzib170G0813' => 'dzi', 'Duzib235G1128' => 'dzi', 'Duzib248G1060' => 'dzi', 'ECA232G1910' => 'eca', 'ECA233G4621' => 'eca', 'ECA238G1216' => 'eca', 'ECA238G1784' => 'eca', 'ECA248G1242' => 'eca', 'EL10Ac8g20071' => 'bvu', 'EL10Ac9g21086' => 'bvu', 'EL10Ac9g22407' => 'bvu', 'EL10Ac9g22412' => 'bvu', 'Eucgr.A01119' => 'egr', 'Eucgr.E04043' => 'egr', 'Eucgr.J00428' => 'egr', 'Eucgr.J00958' => 'egr', 'FAN11G3091' => 'fan', 'FAN11G3651' => 'fan', 'FAN16G2566' => 'fan', 'FAN21G3155' => 'fan', 'FAN21G3400' => 'fan', 'FAN21G3543' => 'fan', 'FAN25G0234' => 'fan', 'FAN25G1422' => 'fan', 'FAN25G3392' => 'fan', 'FvH4_3g01940' => 'fve', 'FvH4_3g29870' => 'fve', 'FvH4_3g33680' => 'fve', 'Glyma.09G004200' => 'gma', 'Glyma.11G151288' => 'gma', 'Glyma.11G189100' => 'gma', 'Glyma.12G072500' => 'gma', 'Glyma.12G085500' => 'gma', 'Glyma.12G181800' => 'gma', 'Glyma.12G193000' => 'gma', 'Glyma.13G309300' => 'gma', 'Glyma.13G319000' => 'gma', 'Glyma.17G012600' => 'gma', 'Gohir.A06G148600' => 'ghi', 'Gohir.A07G115800' => 'ghi', 'Gohir.A08G003600' => 'ghi', 'Gohir.A09G093300' => 'ghi', 'Gohir.A09G105400' => 'ghi', 'Gohir.A09G105500' => 'ghi', 'Gohir.D06G154600' => 'ghi', 'Gohir.D07G120200' => 'ghi', 'Gohir.D08G013900' => 'ghi', 'Gohir.D09G093100' => 'ghi', 'Gohir.D09G102200' => 'ghi', 'Gohir.D09G102300' => 'ghi', 'Gorai.001G129400' => 'gra', 'Gorai.004G008200' => 'gra', 'Gorai.006G109800' => 'gra', 'Gorai.006G119500' => 'gra', 'Gorai.006G121300' => 'gra', 'Gorai.010G180700' => 'gra', 'GSVIVG01012716001' => 'vvi', 'GSVIVG01025118001' => 'vvi', 'GSVIVG01030439001' => 'vvi', 'GSVIVG01031397001' => 'vvi', 'HanXRQChr01g0004201' => 'han', 'HanXRQChr02g0054941' => 'han', 'HanXRQChr05g0141811' => 'han', 'HanXRQChr07g0197751' => 'han', 'HanXRQChr11g0346691' => 'han', 'HanXRQChr13g0396971' => 'han', 'HanXRQChr14g0432951' => 'han', 'HanXRQChr14g0452001' => 'han', 'HanXRQChr15g0496681' => 'han', 'HanXRQChr17g0557491' => 'han', 'HanXRQChr17g0557501' => 'han', 'Haze_06809' => 'cav', 'Haze_12852' => 'cav', 'Haze_15850' => 'cav', 'Haze_23446' => 'cav', 'Haze_23942' => 'cav', 'Haze_23943' => 'cav', 'Hma1.2p1_0091F.1_g046450' => 'hma', 'Hma1.2p1_0128F.1_g059910' => 'hma', 'Hma1.2p1_0249F.1_g102260' => 'hma', 'Hma1.2p1_0453F.1_g156190' => 'hma', 'Hma1.2p1_0695F.1_g204380' => 'hma', 'Hma1.2p1_0749F.1_g212650' => 'hma', 'Hma1.2p1_2156F.1_g315420' => 'hma', 'Hma1.2p1_2686F.1_g326940' => 'hma', 'HPP92_006428' => 'vpl', 'HPP92_012069' => 'vpl', 'HPP92_014129' => 'vpl', 'HPP92_014133' => 'vpl', 'HPP92_017315' => 'vpl', 'HPP92_026445' => 'vpl', 'HPP92_026446' => 'vpl', 'Hund00774' => 'sun', 'Hund07682' => 'sun', 'Hund21413' => 'sun', 'Hund23462' => 'sun', 'Hund23463' => 'sun', 'Lalb_Chr03g0027911' => 'lal', 'Lalb_Chr13g0304271' => 'lal', 'Lalb_Chr19g0137471' => 'lal', 'Lalb_Chr22g0350651' => 'lal', 'Lalb_Chr24g0395151' => 'lal', 'Lj1A1231T40' => 'lonja', 'Lj1A221T48' => 'lonja', 'Lj1C924T12' => 'lonja', 'Lj2C993G6' => 'lonja', 'Lj3g0005790' => 'lja', 'Lj3g0015432' => 'lja', 'Lj3g0017722' => 'lja', 'Lj3g0018497' => 'lja', 'Lj4g0025071' => 'lja', 'Lsat_1_v5_gn_1_129680' => 'lsa', 'Lsat_1_v5_gn_2_25321' => 'lsa', 'Lsat_1_v5_gn_2_95461' => 'lsa', 'Lsat_1_v5_gn_4_159620' => 'lsa', 'Lsat_1_v5_gn_6_41301' => 'lsa', 'Lsat_1_v5_gn_6_74660' => 'lsa', 'Lsat_1_v5_gn_7_11520' => 'lsa', 'Lsat_1_v5_gn_9_67680' => 'lsa', 'Manes.04G008300' => 'mes', 'Manes.04G008400' => 'mes', 'Manes.04G026500' => 'mes', 'Manes.10G135300' => 'mes', 'Manes.11G157300' => 'mes', 'Manes.12G074000' => 'mes', 'Manes.16G006200' => 'mes', 'Manes.17G026400' => 'mes', 'Mapoly0024s0086' => 'mpo', 'Mapoly0024s0087' => 'mpo', 'Mapoly0071s0057' => 'mpo', 'Mapoly0204s0012' => 'mpo', 'MBI04_g37681_MAGBIO' => 'mbi', 'MBI05_g17779_MAGBIO' => 'mbi', 'MBI12_g31184_MAGBIO' => 'mbi', 'MBI17_g11083_MAGBIO' => 'mbi', 'MBI18_g03883_MAGBIO' => 'mbi', 'MBI18_g28940_MAGBIO' => 'mbi', 'MCO01G690' => 'mco', 'MD03G1109900' => 'mdo', 'MD03G1134800' => 'mdo', 'MD05G1348000' => 'mdo', 'MD10G1322400' => 'mdo', 'MD11G1123300' => 'mdo', 'MD11G1157600' => 'mdo', 'Medtr2g084875' => 'mtr', 'Medtr2g088130' => 'mtr', 'Medtr4g055310' => 'mtr', 'Medtr4g061070' => 'mtr', 'Medtr4g132250' => 'mtr', 'MELO3C004795.2' => 'cme', 'MELO3C004797.2' => 'cme', 'MELO3C007396.2' => 'cme', 'MELO3C019277.2' => 'cme', 'MELO3C021449.2' => 'cme', 'MELO3C025736.2' => 'cme', 'Migut.D02175' => 'egut', 'Migut.H01573' => 'egut', 'Migut.M01327' => 'egut', 'Migut.N02513' => 'egut', 'MSTRG.14638' => 'ama', 'MSTRG.18632' => 'ama', 'MSTRG.7203' => 'ama', 'Nitab4.5_0000533g0140' => 'nta', 'Nitab4.5_0000888g0150' => 'nta', 'Nitab4.5_0001453g0040' => 'nta', 'Nitab4.5_0002827g0090' => 'nta', 'Nitab4.5_0003082g0040' => 'nta', 'Nitab4.5_0007799g0040' => 'nta', 'Nitab4.5_0008983g0010' => 'nta', 'Nitab4.5_0009017g0020' => 'nta', 'Nn1g02132' => 'nnu', 'Nn1g03492' => 'nnu', 'Nn1g03493' => 'nnu', 'Nn1g03494' => 'nnu', 'Nn1g07164' => 'nnu', 'Nn1g07291' => 'nnu', 'Nn2g10655' => 'nnu', 'Nn2g11652' => 'nnu', 'Nn2g14008' => 'nnu', 'Nn3g17476' => 'nnu', 'Nn3g17477' => 'nnu', 'Nn4g22370' => 'nnu', 'Nn4g25255' => 'nnu', 'Nn5g27755' => 'nnu', 'Nn6g34260' => 'nnu', 'Nn6g35041' => 'nnu', 'Oeu005924.1' => 'oeu', 'Oeu008383.1' => 'oeu', 'Oeu014928.1' => 'oeu', 'Oeu019889.1' => 'oeu', 'Oeu022271.1' => 'oeu', 'Oeu025271.1' => 'oeu', 'Oeu036302.1' => 'oeu', 'Oeu044100.1' => 'oeu', 'Os01g0528300' => 'osa', 'Os03g0286200' => 'osa', 'Os04g0406600' => 'osa', 'Os07g0512000' => 'osa', 'Os07g0694600' => 'osa', 'Os08g0411000' => 'osa', 'Os09g0565700' => 'osa', 'Os09g0566050' => 'osa', 'Os10g0523700' => 'osa', 'Peaxi162Scf00002g00514' => 'pax', 'Peaxi162Scf00047g01817' => 'pax', 'Peaxi162Scf00114g00001' => 'pax', 'Peaxi162Scf00147g00613' => 'pax', 'Peaxi162Scf00389g00425' => 'pax', 'PGR042G1139' => 'pgr', 'PGR042G3273' => 'pgr', 'PGR102G2180' => 'pgr', 'PGR119G0234' => 'pgr', 'PGR119G0668' => 'pgr', 'PGSC0003DMG400007122' => 'stu', 'PGSC0003DMG400016478' => 'stu', 'PGSC0003DMG400025374' => 'stu', 'PGSC0003DMG400026536' => 'stu', 'Phvul.003G079600' => 'pvu', 'Phvul.005G115600' => 'pvu', 'Phvul.005G127100' => 'pvu', 'Phvul.006G149500' => 'pvu', 'Phvul.006G149600' => 'pvu', 'Phvul.011G071800' => 'pvu', 'Phvul.011G090400' => 'pvu', 'Potri.004G013400' => 'ptr', 'Potri.004G188100' => 'ptr', 'Potri.008G195500' => 'ptr', 'Potri.009G148800' => 'ptr', 'Potri.011G004700' => 'ptr', 'Pp3c17_22810' => 'ppa', 'Pp3c18_4480' => 'ppa', 'Pp3c19_13030' => 'ppa', 'Pp3c1_33620' => 'ppa', 'Pp3c2_9380' => 'ppa', 'PRCOL_00001023' => 'pco', 'Prupe.3G216300' => 'ppe', 'Prupe.4G019500' => 'ppe', 'Prupe.6G092500' => 'ppe', 'Prupe.6G119200' => 'ppe', 'Psat0s1945g0080' => 'psa', 'Psat0s4167g0040' => 'psa', 'Psat1g185800' => 'psa', 'Psat4g006440' => 'psa', 'Psat4g006480' => 'psa', 'Psat4g168120' => 'psa', 'Psat5g255680' => 'psa', 'Psat5g261760' => 'psa', 'Psat7g222120' => 'psa', 'PSO063G7252' => 'pso', 'PSO170G4778' => 'pso', 'PSO210G2249' => 'pso', 'PSO339G2411' => 'pso', 'PSO339G2457' => 'pso', 'PSO339G2854' => 'pso', 'PSO339G4288' => 'pso', 'PSO339G4615' => 'pso', 'PSO384G2796' => 'pso', 'PSO384G2940' => 'pso', 'PSO384G4227' => 'pso', 'PSO478G1425' => 'pso', 'PSO541G3863' => 'pso', 'PSO675G0507' => 'pso', 'PSO782G0338' => 'pso', 'PSO832G0644' => 'pso', 'QL01p013664' => 'qlo', 'QL01p036598' => 'qlo', 'QL05p072984' => 'qlo', 'QL08p005768' => 'qlo', 'QL08p032743' => 'qlo', 'QL93p0073_0439' => 'qlo', 'QL93p0073_0444' => 'qlo', 'RcHm_v2.0_Chr5g0002851' => 'rch', 'RcHm_v2.0_Chr5g0055201' => 'rch', 'RcHm_v2.0_Chr5g0061191' => 'rch', 'RcHm_v2.0_Chr7g0203231' => 'rch', 'Rhsim01G0208100' => 'rsi', 'Rhsim01G0208200' => 'rsi', 'Rhsim02G0106500' => 'rsi', 'Rhsim03G0107900' => 'rsi', 'Rhsim06G0163400' => 'rsi', 'Rhsim13G0105200' => 'rsi', 'Sabra04G0006300' => 'sbr', 'Sabra04G0127000' => 'sbr', 'Sabra08G0148700' => 'sbr', 'Sabra09G0117400' => 'sbr', 'SalBow1G3326' => 'sbo', 'SalBow3G3228' => 'sbo', 'SalBow6G1634' => 'sbo', 'SalBow6G3603' => 'sbo', 'SalBow6G5266' => 'sbo', 'SalBow7G2265' => 'sbo', 'SalBow8G0850' => 'sbo', 'SalBow8G2592' => 'sbo', 'Sc05g0009240' => 'sci', 'Sc12g0002300' => 'sci', 'Sc21g0000100' => 'sci', 'Sc21g0004720' => 'sci', 'Sed0002949' => 'sed', 'Sed0004114' => 'sed', 'Sed0004306' => 'sed', 'Sed0006172' => 'sed', 'Sed0008413' => 'sed', 'Sed0013809' => 'sed', 'Sed0019556' => 'sed', 'SEGI_03570' => 'sgi', 'SEGI_07859' => 'sgi', 'SEGI_15042' => 'sgi', 'SEGI_16263' => 'sgi', 'SEGI_16552' => 'sgi', 'SEGI_24331' => 'sgi', 'SEGI_27316' => 'sgi', 'SEGI_29521' => 'sgi', 'SEGI_41342' => 'sgi', 'SGA_v2.0_scaffold27G11617' => 'sas', 'SGA_v2.0_scaffold316G48428' => 'sas', 'SGA_v2.0_scaffold49G18261' => 'sas', 'SGA_v2.0_scaffold7G03831' => 'sas', 'SGA_v2.0_scaffold93G28359' => 'sas', 'SHI02210' => 'shi', 'SHI06028' => 'shi', 'SHI06321' => 'shi', 'SMO111G0012' => 'smo', 'SMO228G0080' => 'smo', 'SMO356G0756' => 'smo', 'Solyc02g080620.3' => 'sly', 'Solyc06g074530.1' => 'sly', 'Solyc11g066890.1' => 'sly', 'Solyc11g072520.3' => 'sly', 'Sopen02g025330' => 'spe', 'Sopen06g031000' => 'spe', 'Sopen09g008240' => 'spe', 'Sopen09g025210' => 'spe', 'Sopen11g026600' => 'spe', 'Sopen11g030170' => 'spe', 'Sp1g10420' => 'spa', 'Sp3g06570' => 'spa', 'Sp4g10660' => 'spa', 'Sp5g16460' => 'spa', 'Sp6g22710' => 'spa', 'TAR365G0112' => 'tar', 'TAR369G0717' => 'tar', 'TAR374G0976' => 'tar', 'TAR623G1128' => 'tar', 'TAR626G1937' => 'tar', 'TAR627G0123' => 'tar', 'TAR628G0305' => 'tar', 'TAR636G1176' => 'tar', 'TAR636G2442' => 'tar', 'THA.LOC104800556' => 'tha', 'THA.LOC104809501' => 'tha', 'THA.LOC104815126' => 'tha', 'THA.LOC104815732' => 'tha', 'THA.LOC104823528' => 'tha', 'Thecc.02G365600' => 'tca', 'Thecc.06G222300' => 'tca', 'Thecc.09G261800' => 'tca', 'Thecc.09G291400' => 'tca', 'Thhalv10003028m.g' => 'esa', 'Thhalv10007886m.g' => 'esa', 'Thhalv10016085m.g' => 'esa', 'Thhalv10016681m.g' => 'esa', 'Thhalv10020951m.g' => 'esa', 'TPR.G15598' => 'tpr', 'TPR.G29305' => 'tpr', 'TPR.G32395' => 'tpr', 'TPR.G36998' => 'tpr', 'TPR.G4227' => 'tpr', 'TWI18G1433' => 'twi', 'TWI31G0755' => 'twi', 'TWI38G0912' => 'twi', 'TWI75G1097' => 'twi', 'TWI75G1619' => 'twi', 'TWI79G1336' => 'twi', 'unitig_0.g943' => 'ugi', 'unitig_0.g944' => 'ugi', 'unitig_22.g6646' => 'ugi', 'unitig_37.g12681' => 'ugi', 'unitig_8.g3290' => 'ugi', 'vmacro03278' => 'vma', 'vmacro12197' => 'vma', 'vmacro14478' => 'vma', 'vmacro15787' => 'vma', 'vmacro15789' => 'vma', 'vmacro15790' => 'vma', 'vmacro15806' => 'vma', 'vmacro22907' => 'vma', 'vmacro22908' => 'vma', 'vmacro22909' => 'vma', 'vmacro23108' => 'vma', 'VMungo0540G0540' => 'vmu', 'VMungo0540G2468' => 'vmu', 'VMungo1080G0390' => 'vmu', 'VMungo1080G1165' => 'vmu', 'VMungo1127G0170' => 'vmu', 'VMungo1127G2099' => 'vmu', 'VMungo1215G3013' => 'vmu', 'Zm00001eb013110' => 'zma', 'Zm00001eb084260' => 'zma', 'Zm00001eb096110' => 'zma', 'Zm00001eb217510' => 'zma', 'Zm00001eb322550' => 'zma', 'Zm00001eb390770' => 'zma', 'Zm00001eb397170' => 'zma', 'Zm00001eb404610' => 'zma', 'Zm00001eb421790' => 'zma' ), 'gf_id' => 'HOM05D000911', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000911' ), 'data_identifier' => 'HOM05D000911', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000911', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27780' => 'bna', 'A03p35380' => 'bna', 'A04p21160' => 'bna', 'A05p40570' => 'bna', 'A06p26900' => 'bna', 'A08p33230' => 'bna', 'A09p65960' => 'bna', 'A10p18290' => 'bna', 'Aa31LG1G12990' => 'aar', 'Aa31LG1G2980' => 'aar', 'Aa31LG4G14320' => 'aar', 'Aa31LG7G11800' => 'aar', 'Aa31sc36G50' => 'aar', 'Aa31sc36G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3721' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5459' => 'aag', 'Actinidia03028' => 'ach', 'Actinidia03753' => 'ach', 'Actinidia04187' => 'ach', 'Actinidia05509' => 'ach', 'Actinidia24180' => 'ach', 'Actinidia26906' => 'ach', 'Actinidia37097' => 'ach', 'Actinidia38249' => 'ach', 'Ah.01g003470' => 'amhyb', 'Ah.01g004580' => 'amhyb', 'Ah.01g014850' => 'amhyb', 'Ah.01g016830' => 'amhyb', 'Ah.14g088000' => 'amhyb', 'AL1G22980' => 'aly', 'AL3G18990' => 'aly', 'AL4G22440' => 'aly', 'AL4G33180' => 'aly', 'AL5G22920' => 'aly', 'AL6G33660' => 'aly', 'AL8G20720' => 'aly', 'Aqoxy1G00935' => 'aox', 'Aqoxy1G02094' => 'aox', 'Aqoxy2G01239' => 'aox', 'Aqoxy4G01870' => 'aox', 'Aqoxy7G00450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.36ZVTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71EM27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5D6C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH3WRE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3NCM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RIM768' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YB5YRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z36GDV' => 'arhy', 'AT1G08250' => 'ath', 'AT1G11790' => 'ath', 'AT2G27820' => 'ath', 'AT3G07630' => 'ath', 'AT3G44720' => 'ath', 'AT5G22630' => 'ath', 'ATR0693G304' => 'atr', 'ATR0794G109' => 'atr', 'ATR0820G120' => 'atr', 'ATR1159G064' => 'atr', 'Atru.chr10.2239' => 'acertr', 'Atru.chr3.3371' => 'acertr', 'Atru.chr6.3202' => 'acertr', 'AUR62006499' => 'cqu', 'AUR62012718' => 'cqu', 'AUR62021938' => 'cqu', 'AUR62023932' => 'cqu', 'AUR62025034' => 'cqu', 'AUR62025035' => 'cqu', 'AUR62038307' => 'cqu', 'AUR62043466' => 'cqu', 'BcaB02g10748' => 'bca', 'BcaB03g13231' => 'bca', 'BcaB03g14689' => 'bca', 'BcaB05g22716' => 'bca', 'BcaB06g28172' => 'bca', 'BcaB08g36413' => 'bca', 'BcaC01g02186' => 'bca', 'BcaC01g04272' => 'bca', 'BcaC02g08080' => 'bca', 'BcaC02g08227' => 'bca', 'BcaC03g13901' => 'bca', 'BcaC04g19593' => 'bca', 'BcaC04g20874' => 'bca', 'BcaC05g29557' => 'bca', 'BcaC06g35505' => 'bca', 'BcaC07g41954' => 'bca', 'BcaC07g41955' => 'bca', 'BcaC07g41956' => 'bca', 'BcaC07g42519' => 'bca', 'BcaC07g42520' => 'bca', 'BcaC07g42523' => 'bca', 'BcaC07g42524' => 'bca', 'BcaC07g42525' => 'bca', 'BcaC08g47480' => 'bca', 'BcaC08g47481' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00530' => 'bna', 'BolC2t07178H' => 'bol', 'BolC3t16567H' => 'bol', 'BolC4t27234H' => 'bol', 'BolC5t29728H' => 'bol', 'BolC5t34622H' => 'bol', 'BolC6t40321H' => 'bol', 'BolC7t42028H' => 'bol', 'BolC8t49125H' => 'bol', 'BolC8t52538H' => 'bol', 'BolC8t52539H' => 'bol', 'BolC9t56681H' => 'bol', 'BolC9t58266H' => 'bol', 'BolSC21t60294H' => 'bol', 'BraA02t05670Z' => 'bra', 'BraA03t12716Z' => 'bra', 'BraA04t17685Z' => 'bra', 'BraA05t22788Z' => 'bra', 'BraA06t24032Z' => 'bra', 'BraA06t25625Z' => 'bra', 'BraA07t27930Z' => 'bra', 'BraA08t35242Z' => 'bra', 'BraA09t38609Z' => 'bra', 'BraA10t43905Z' => 'bra', 'C02p11060' => 'bna', 'C03p42990' => 'bna', 'C03p67310' => 'bna', 'C04p56990' => 'bna', 'C04p58660' => 'bna', 'C05p09890' => 'bna', 'C05p59680' => 'bna', 'C06p19830' => 'bna', 'C06p53040' => 'bna', 'C07p15230' => 'bna', 'C08p50070' => 'bna', 'C08p50090' => 'bna', 'C09p38330' => 'bna', 'C09p53940' => 'bna', 'CAN.G1014.1' => 'can', 'CAN.G644.30' => 'can', 'CAN.G84.47' => 'can', 'CAN.G919.8' => 'can', 'CANSAT54G0113' => 'cansat', 'CANSAT54G1286' => 'cansat', 'CANSAT64G1020' => 'cansat', 'CARHR008080' => 'chi', 'CARHR008090' => 'chi', 'CARHR012130' => 'chi', 'CARHR038390' => 'chi', 'CARHR082330' => 'chi', 'CARHR120520' => 'chi', 'CARHR151470' => 'chi', 'CARHR190950' => 'chi', 'Carub.0001s0760' => 'cru', 'Carub.0001s1146' => 'cru', 'Carub.0003s0721' => 'cru', 'Carub.0004s0858' => 'cru', 'Carub.0005s1040' => 'cru', 'Carub.0006s2035' => 'cru', 'Carub.0015s0005' => 'cru', 'Ca_01607_v3' => 'car', 'Ca_01677_v3' => 'car', 'Ca_06087_v3' => 'car', 'Ca_19238_v3' => 'car', 'Ca_19373_v3' => 'car', 'Ca_21079_v3' => 'car', 'CBR_g54016' => 'cbr', 'CBR_g54018' => 'cbr', 'CBR_g54020' => 'cbr', 'Cc01_g09780' => 'ccan', 'Cc01_g11680' => 'ccan', 'Cc02_g15610' => 'ccan', 'Cc05_g04350' => 'ccan', 'Cc09_g01580' => 'ccan', 'CDE01G0795' => 'cde', 'CDE02G2024' => 'cde', 'CDE02G2260' => 'cde', 'CDE02G4561' => 'cde', 'CDE05G2733' => 'cde', 'CDE05G3422' => 'cde', 'CDE06G2003' => 'cde', 'CDE08G0576' => 'cde', 'CDE09G0048' => 'cde', 'CDE11G0805' => 'cde', 'Cfa003644' => 'cfa', 'Cfa006290' => 'cfa', 'Cfa010080' => 'cfa', 'Cfa011376' => 'cfa', 'Cfa011576' => 'cfa', 'Cfa011577' => 'cfa', 'Cfa014389' => 'cfa', 'Ciclev10006044m.g' => 'ccl', 'Ciclev10006954m.g' => 'ccl', 'Ciclev10015131m.g' => 'ccl', 'Ciclev10015580m.g' => 'ccl', 'Ciclev10028359m.g' => 'ccl', 'Ciclev10028573m.g' => 'ccl', 'CiPaw.03G159300' => 'cil', 'CiPaw.04G115100' => 'cil', 'CiPaw.09G092800' => 'cil', 'CiPaw.10G071800' => 'cil', 'CiPaw.13G105800' => 'cil', 'CiPaw.13G141000' => 'cil', 'CiPaw.14G103400' => 'cil', 'ClCG01G012700' => 'cla', 'ClCG01G012720' => 'cla', 'ClCG01G021920' => 'cla', 'ClCG02G008870' => 'cla', 'ClCG02G020840' => 'cla', 'ClCG02G021930' => 'cla', 'COL.COLO4_19302' => 'col', 'COL.COLO4_25262' => 'col', 'COL.COLO4_31788' => 'col', 'Cpa.g.c34684' => 'cpa', 'Cpa.g.c36520.1' => 'cpa', 'Cpa.g.c45626' => 'cpa', 'Cpa.g.sc121.17' => 'cpa', 'Cpa.g.sc13.22' => 'cpa', 'Cpa.g.sc87.88' => 'cpa', 'Cre06.g261800' => 'cre', 'CsaV3_1G014500' => 'csa', 'CsaV3_1G014510' => 'csa', 'CsaV3_2G034880' => 'csa', 'CsaV3_6G014760' => 'csa', 'CsaV3_6G021500' => 'csa', 'CsaV3_6G048980' => 'csa', 'CSS0002511' => 'camsi', 'CSS0007556' => 'camsi', 'CSS0008532' => 'camsi', 'CSS0009709' => 'camsi', 'CSS0010486' => 'camsi', 'CSS0016768' => 'camsi', 'CSS0023512' => 'camsi', 'CSS0025341' => 'camsi', 'CSS0027999' => 'camsi', 'CSS0028944' => 'camsi', 'CSS0032292' => 'camsi', 'CSS0032464' => 'camsi', 'CSS0037153' => 'camsi', 'CSS0039256' => 'camsi', 'CSS0048392' => 'camsi', 'CSS0050458' => 'camsi', 'DCAR_004224' => 'dca', 'DCAR_006147' => 'dca', 'DCAR_006465' => 'dca', 'DCAR_008159' => 'dca', 'DCAR_012164' => 'dca', 'DCAR_019764' => 'dca', 'Dinv05418' => 'din', 'Dinv10839' => 'din', 'Dinv12521' => 'din', 'Dinv13900' => 'din', 'Dinv29426' => 'din', 'Duzib150G0263' => 'dzi', 'Duzib168G1178' => 'dzi', 'Duzib168G1924' => 'dzi', 'Duzib170G0299' => 'dzi', 'Duzib170G0813' => 'dzi', 'Duzib235G1128' => 'dzi', 'Duzib248G1060' => 'dzi', 'ECA232G1910' => 'eca', 'ECA233G4621' => 'eca', 'ECA238G1216' => 'eca', 'ECA238G1784' => 'eca', 'ECA248G1242' => 'eca', 'EL10Ac8g20071' => 'bvu', 'EL10Ac9g21086' => 'bvu', 'EL10Ac9g22407' => 'bvu', 'EL10Ac9g22412' => 'bvu', 'Eucgr.A01119' => 'egr', 'Eucgr.E04043' => 'egr', 'Eucgr.J00428' => 'egr', 'Eucgr.J00958' => 'egr', 'FAN11G3091' => 'fan', 'FAN11G3651' => 'fan', 'FAN16G2566' => 'fan', 'FAN21G3155' => 'fan', 'FAN21G3400' => 'fan', 'FAN21G3543' => 'fan', 'FAN25G0234' => 'fan', 'FAN25G1422' => 'fan', 'FAN25G3392' => 'fan', 'FvH4_3g01940' => 'fve', 'FvH4_3g29870' => 'fve', 'FvH4_3g33680' => 'fve', 'Glyma.09G004200' => 'gma', 'Glyma.11G151288' => 'gma', 'Glyma.11G189100' => 'gma', 'Glyma.12G072500' => 'gma', 'Glyma.12G085500' => 'gma', 'Glyma.12G181800' => 'gma', 'Glyma.12G193000' => 'gma', 'Glyma.13G309300' => 'gma', 'Glyma.13G319000' => 'gma', 'Glyma.17G012600' => 'gma', 'Gohir.A06G148600' => 'ghi', 'Gohir.A07G115800' => 'ghi', 'Gohir.A08G003600' => 'ghi', 'Gohir.A09G093300' => 'ghi', 'Gohir.A09G105400' => 'ghi', 'Gohir.A09G105500' => 'ghi', 'Gohir.D06G154600' => 'ghi', 'Gohir.D07G120200' => 'ghi', 'Gohir.D08G013900' => 'ghi', 'Gohir.D09G093100' => 'ghi', 'Gohir.D09G102200' => 'ghi', 'Gohir.D09G102300' => 'ghi', 'Gorai.001G129400' => 'gra', 'Gorai.004G008200' => 'gra', 'Gorai.006G109800' => 'gra', 'Gorai.006G119500' => 'gra', 'Gorai.006G121300' => 'gra', 'Gorai.010G180700' => 'gra', 'GSVIVG01012716001' => 'vvi', 'GSVIVG01025118001' => 'vvi', 'GSVIVG01030439001' => 'vvi', 'GSVIVG01031397001' => 'vvi', 'HanXRQChr01g0004201' => 'han', 'HanXRQChr02g0054941' => 'han', 'HanXRQChr05g0141811' => 'han', 'HanXRQChr07g0197751' => 'han', 'HanXRQChr11g0346691' => 'han', 'HanXRQChr13g0396971' => 'han', 'HanXRQChr14g0432951' => 'han', 'HanXRQChr14g0452001' => 'han', 'HanXRQChr15g0496681' => 'han', 'HanXRQChr17g0557491' => 'han', 'HanXRQChr17g0557501' => 'han', 'Haze_06809' => 'cav', 'Haze_12852' => 'cav', 'Haze_15850' => 'cav', 'Haze_23446' => 'cav', 'Haze_23942' => 'cav', 'Haze_23943' => 'cav', 'Hma1.2p1_0091F.1_g046450' => 'hma', 'Hma1.2p1_0128F.1_g059910' => 'hma', 'Hma1.2p1_0249F.1_g102260' => 'hma', 'Hma1.2p1_0453F.1_g156190' => 'hma', 'Hma1.2p1_0695F.1_g204380' => 'hma', 'Hma1.2p1_0749F.1_g212650' => 'hma', 'Hma1.2p1_2156F.1_g315420' => 'hma', 'Hma1.2p1_2686F.1_g326940' => 'hma', 'HPP92_006428' => 'vpl', 'HPP92_012069' => 'vpl', 'HPP92_014129' => 'vpl', 'HPP92_014133' => 'vpl', 'HPP92_017315' => 'vpl', 'HPP92_026445' => 'vpl', 'HPP92_026446' => 'vpl', 'Hund00774' => 'sun', 'Hund07682' => 'sun', 'Hund21413' => 'sun', 'Hund23462' => 'sun', 'Hund23463' => 'sun', 'Lalb_Chr03g0027911' => 'lal', 'Lalb_Chr13g0304271' => 'lal', 'Lalb_Chr19g0137471' => 'lal', 'Lalb_Chr22g0350651' => 'lal', 'Lalb_Chr24g0395151' => 'lal', 'Lj1A1231T40' => 'lonja', 'Lj1A221T48' => 'lonja', 'Lj1C924T12' => 'lonja', 'Lj2C993G6' => 'lonja', 'Lj3g0005790' => 'lja', 'Lj3g0015432' => 'lja', 'Lj3g0017722' => 'lja', 'Lj3g0018497' => 'lja', 'Lj4g0025071' => 'lja', 'Lsat_1_v5_gn_1_129680' => 'lsa', 'Lsat_1_v5_gn_2_25321' => 'lsa', 'Lsat_1_v5_gn_2_95461' => 'lsa', 'Lsat_1_v5_gn_4_159620' => 'lsa', 'Lsat_1_v5_gn_6_41301' => 'lsa', 'Lsat_1_v5_gn_6_74660' => 'lsa', 'Lsat_1_v5_gn_7_11520' => 'lsa', 'Lsat_1_v5_gn_9_67680' => 'lsa', 'Manes.04G008300' => 'mes', 'Manes.04G008400' => 'mes', 'Manes.04G026500' => 'mes', 'Manes.10G135300' => 'mes', 'Manes.11G157300' => 'mes', 'Manes.12G074000' => 'mes', 'Manes.16G006200' => 'mes', 'Manes.17G026400' => 'mes', 'Mapoly0024s0086' => 'mpo', 'Mapoly0024s0087' => 'mpo', 'Mapoly0071s0057' => 'mpo', 'Mapoly0204s0012' => 'mpo', 'MBI04_g37681_MAGBIO' => 'mbi', 'MBI05_g17779_MAGBIO' => 'mbi', 'MBI12_g31184_MAGBIO' => 'mbi', 'MBI17_g11083_MAGBIO' => 'mbi', 'MBI18_g03883_MAGBIO' => 'mbi', 'MBI18_g28940_MAGBIO' => 'mbi', 'MCO01G690' => 'mco', 'MD03G1109900' => 'mdo', 'MD03G1134800' => 'mdo', 'MD05G1348000' => 'mdo', 'MD10G1322400' => 'mdo', 'MD11G1123300' => 'mdo', 'MD11G1157600' => 'mdo', 'Medtr2g084875' => 'mtr', 'Medtr2g088130' => 'mtr', 'Medtr4g055310' => 'mtr', 'Medtr4g061070' => 'mtr', 'Medtr4g132250' => 'mtr', 'MELO3C004795.2' => 'cme', 'MELO3C004797.2' => 'cme', 'MELO3C007396.2' => 'cme', 'MELO3C019277.2' => 'cme', 'MELO3C021449.2' => 'cme', 'MELO3C025736.2' => 'cme', 'Migut.D02175' => 'egut', 'Migut.H01573' => 'egut', 'Migut.M01327' => 'egut', 'Migut.N02513' => 'egut', 'MSTRG.14638' => 'ama', 'MSTRG.18632' => 'ama', 'MSTRG.7203' => 'ama', 'Nitab4.5_0000533g0140' => 'nta', 'Nitab4.5_0000888g0150' => 'nta', 'Nitab4.5_0001453g0040' => 'nta', 'Nitab4.5_0002827g0090' => 'nta', 'Nitab4.5_0003082g0040' => 'nta', 'Nitab4.5_0007799g0040' => 'nta', 'Nitab4.5_0008983g0010' => 'nta', 'Nitab4.5_0009017g0020' => 'nta', 'Nn1g02132' => 'nnu', 'Nn1g03492' => 'nnu', 'Nn1g03493' => 'nnu', 'Nn1g03494' => 'nnu', 'Nn1g07164' => 'nnu', 'Nn1g07291' => 'nnu', 'Nn2g10655' => 'nnu', 'Nn2g11652' => 'nnu', 'Nn2g14008' => 'nnu', 'Nn3g17476' => 'nnu', 'Nn3g17477' => 'nnu', 'Nn4g22370' => 'nnu', 'Nn4g25255' => 'nnu', 'Nn5g27755' => 'nnu', 'Nn6g34260' => 'nnu', 'Nn6g35041' => 'nnu', 'Oeu005924.1' => 'oeu', 'Oeu008383.1' => 'oeu', 'Oeu014928.1' => 'oeu', 'Oeu019889.1' => 'oeu', 'Oeu022271.1' => 'oeu', 'Oeu025271.1' => 'oeu', 'Oeu036302.1' => 'oeu', 'Oeu044100.1' => 'oeu', 'Os01g0528300' => 'osa', 'Os03g0286200' => 'osa', 'Os04g0406600' => 'osa', 'Os07g0512000' => 'osa', 'Os07g0694600' => 'osa', 'Os08g0411000' => 'osa', 'Os09g0565700' => 'osa', 'Os09g0566050' => 'osa', 'Os10g0523700' => 'osa', 'Peaxi162Scf00002g00514' => 'pax', 'Peaxi162Scf00047g01817' => 'pax', 'Peaxi162Scf00114g00001' => 'pax', 'Peaxi162Scf00147g00613' => 'pax', 'Peaxi162Scf00389g00425' => 'pax', 'PGR042G1139' => 'pgr', 'PGR042G3273' => 'pgr', 'PGR102G2180' => 'pgr', 'PGR119G0234' => 'pgr', 'PGR119G0668' => 'pgr', 'PGSC0003DMG400007122' => 'stu', 'PGSC0003DMG400016478' => 'stu', 'PGSC0003DMG400025374' => 'stu', 'PGSC0003DMG400026536' => 'stu', 'Phvul.003G079600' => 'pvu', 'Phvul.005G115600' => 'pvu', 'Phvul.005G127100' => 'pvu', 'Phvul.006G149500' => 'pvu', 'Phvul.006G149600' => 'pvu', 'Phvul.011G071800' => 'pvu', 'Phvul.011G090400' => 'pvu', 'Potri.004G013400' => 'ptr', 'Potri.004G188100' => 'ptr', 'Potri.008G195500' => 'ptr', 'Potri.009G148800' => 'ptr', 'Potri.011G004700' => 'ptr', 'Pp3c17_22810' => 'ppa', 'Pp3c18_4480' => 'ppa', 'Pp3c19_13030' => 'ppa', 'Pp3c1_33620' => 'ppa', 'Pp3c2_9380' => 'ppa', 'PRCOL_00001023' => 'pco', 'Prupe.3G216300' => 'ppe', 'Prupe.4G019500' => 'ppe', 'Prupe.6G092500' => 'ppe', 'Prupe.6G119200' => 'ppe', 'Psat0s1945g0080' => 'psa', 'Psat0s4167g0040' => 'psa', 'Psat1g185800' => 'psa', 'Psat4g006440' => 'psa', 'Psat4g006480' => 'psa', 'Psat4g168120' => 'psa', 'Psat5g255680' => 'psa', 'Psat5g261760' => 'psa', 'Psat7g222120' => 'psa', 'PSO063G7252' => 'pso', 'PSO170G4778' => 'pso', 'PSO210G2249' => 'pso', 'PSO339G2411' => 'pso', 'PSO339G2457' => 'pso', 'PSO339G2854' => 'pso', 'PSO339G4288' => 'pso', 'PSO339G4615' => 'pso', 'PSO384G2796' => 'pso', 'PSO384G2940' => 'pso', 'PSO384G4227' => 'pso', 'PSO478G1425' => 'pso', 'PSO541G3863' => 'pso', 'PSO675G0507' => 'pso', 'PSO782G0338' => 'pso', 'PSO832G0644' => 'pso', 'QL01p013664' => 'qlo', 'QL01p036598' => 'qlo', 'QL05p072984' => 'qlo', 'QL08p005768' => 'qlo', 'QL08p032743' => 'qlo', 'QL93p0073_0439' => 'qlo', 'QL93p0073_0444' => 'qlo', 'RcHm_v2.0_Chr5g0002851' => 'rch', 'RcHm_v2.0_Chr5g0055201' => 'rch', 'RcHm_v2.0_Chr5g0061191' => 'rch', 'RcHm_v2.0_Chr7g0203231' => 'rch', 'Rhsim01G0208100' => 'rsi', 'Rhsim01G0208200' => 'rsi', 'Rhsim02G0106500' => 'rsi', 'Rhsim03G0107900' => 'rsi', 'Rhsim06G0163400' => 'rsi', 'Rhsim13G0105200' => 'rsi', 'Sabra04G0006300' => 'sbr', 'Sabra04G0127000' => 'sbr', 'Sabra08G0148700' => 'sbr', 'Sabra09G0117400' => 'sbr', 'SalBow1G3326' => 'sbo', 'SalBow3G3228' => 'sbo', 'SalBow6G1634' => 'sbo', 'SalBow6G3603' => 'sbo', 'SalBow6G5266' => 'sbo', 'SalBow7G2265' => 'sbo', 'SalBow8G0850' => 'sbo', 'SalBow8G2592' => 'sbo', 'Sc05g0009240' => 'sci', 'Sc12g0002300' => 'sci', 'Sc21g0000100' => 'sci', 'Sc21g0004720' => 'sci', 'Sed0002949' => 'sed', 'Sed0004114' => 'sed', 'Sed0004306' => 'sed', 'Sed0006172' => 'sed', 'Sed0008413' => 'sed', 'Sed0013809' => 'sed', 'Sed0019556' => 'sed', 'SEGI_03570' => 'sgi', 'SEGI_07859' => 'sgi', 'SEGI_15042' => 'sgi', 'SEGI_16263' => 'sgi', 'SEGI_16552' => 'sgi', 'SEGI_24331' => 'sgi', 'SEGI_27316' => 'sgi', 'SEGI_29521' => 'sgi', 'SEGI_41342' => 'sgi', 'SGA_v2.0_scaffold27G11617' => 'sas', 'SGA_v2.0_scaffold316G48428' => 'sas', 'SGA_v2.0_scaffold49G18261' => 'sas', 'SGA_v2.0_scaffold7G03831' => 'sas', 'SGA_v2.0_scaffold93G28359' => 'sas', 'SHI02210' => 'shi', 'SHI06028' => 'shi', 'SHI06321' => 'shi', 'SMO111G0012' => 'smo', 'SMO228G0080' => 'smo', 'SMO356G0756' => 'smo', 'Solyc02g080620.3' => 'sly', 'Solyc06g074530.1' => 'sly', 'Solyc11g066890.1' => 'sly', 'Solyc11g072520.3' => 'sly', 'Sopen02g025330' => 'spe', 'Sopen06g031000' => 'spe', 'Sopen09g008240' => 'spe', 'Sopen09g025210' => 'spe', 'Sopen11g026600' => 'spe', 'Sopen11g030170' => 'spe', 'Sp1g10420' => 'spa', 'Sp3g06570' => 'spa', 'Sp4g10660' => 'spa', 'Sp5g16460' => 'spa', 'Sp6g22710' => 'spa', 'TAR365G0112' => 'tar', 'TAR369G0717' => 'tar', 'TAR374G0976' => 'tar', 'TAR623G1128' => 'tar', 'TAR626G1937' => 'tar', 'TAR627G0123' => 'tar', 'TAR628G0305' => 'tar', 'TAR636G1176' => 'tar', 'TAR636G2442' => 'tar', 'THA.LOC104800556' => 'tha', 'THA.LOC104809501' => 'tha', 'THA.LOC104815126' => 'tha', 'THA.LOC104815732' => 'tha', 'THA.LOC104823528' => 'tha', 'Thecc.02G365600' => 'tca', 'Thecc.06G222300' => 'tca', 'Thecc.09G261800' => 'tca', 'Thecc.09G291400' => 'tca', 'Thhalv10003028m.g' => 'esa', 'Thhalv10007886m.g' => 'esa', 'Thhalv10016085m.g' => 'esa', 'Thhalv10016681m.g' => 'esa', 'Thhalv10020951m.g' => 'esa', 'TPR.G15598' => 'tpr', 'TPR.G29305' => 'tpr', 'TPR.G32395' => 'tpr', 'TPR.G36998' => 'tpr', 'TPR.G4227' => 'tpr', 'TWI18G1433' => 'twi', 'TWI31G0755' => 'twi', 'TWI38G0912' => 'twi', 'TWI75G1097' => 'twi', 'TWI75G1619' => 'twi', 'TWI79G1336' => 'twi', 'unitig_0.g943' => 'ugi', 'unitig_0.g944' => 'ugi', 'unitig_22.g6646' => 'ugi', 'unitig_37.g12681' => 'ugi', 'unitig_8.g3290' => 'ugi', 'vmacro03278' => 'vma', 'vmacro12197' => 'vma', 'vmacro14478' => 'vma', 'vmacro15787' => 'vma', 'vmacro15789' => 'vma', 'vmacro15790' => 'vma', 'vmacro15806' => 'vma', 'vmacro22907' => 'vma', 'vmacro22908' => 'vma', 'vmacro22909' => 'vma', 'vmacro23108' => 'vma', 'VMungo0540G0540' => 'vmu', 'VMungo0540G2468' => 'vmu', 'VMungo1080G0390' => 'vmu', 'VMungo1080G1165' => 'vmu', 'VMungo1127G0170' => 'vmu', 'VMungo1127G2099' => 'vmu', 'VMungo1215G3013' => 'vmu', 'Zm00001eb013110' => 'zma', 'Zm00001eb084260' => 'zma', 'Zm00001eb096110' => 'zma', 'Zm00001eb217510' => 'zma', 'Zm00001eb322550' => 'zma', 'Zm00001eb390770' => 'zma', 'Zm00001eb397170' => 'zma', 'Zm00001eb404610' => 'zma', 'Zm00001eb421790' => 'zma' ) $gf_id = 'HOM05D000911' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000911' ) $data_identifier = 'HOM05D000911' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 16, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 5, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 6, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 8, 'nnu' => (int) 16, 'oeu' => (int) 8, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 5, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 16, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421790' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000911', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27780' => 'bna', 'A03p35380' => 'bna', 'A04p21160' => 'bna', 'A05p40570' => 'bna', 'A06p26900' => 'bna', 'A08p33230' => 'bna', 'A09p65960' => 'bna', 'A10p18290' => 'bna', 'Aa31LG1G12990' => 'aar', 'Aa31LG1G2980' => 'aar', 'Aa31LG4G14320' => 'aar', 'Aa31LG7G11800' => 'aar', 'Aa31sc36G50' => 'aar', 'Aa31sc36G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3721' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5459' => 'aag', 'Actinidia03028' => 'ach', 'Actinidia03753' => 'ach', 'Actinidia04187' => 'ach', 'Actinidia05509' => 'ach', 'Actinidia24180' => 'ach', 'Actinidia26906' => 'ach', 'Actinidia37097' => 'ach', 'Actinidia38249' => 'ach', 'Ah.01g003470' => 'amhyb', 'Ah.01g004580' => 'amhyb', 'Ah.01g014850' => 'amhyb', 'Ah.01g016830' => 'amhyb', 'Ah.14g088000' => 'amhyb', 'AL1G22980' => 'aly', 'AL3G18990' => 'aly', 'AL4G22440' => 'aly', 'AL4G33180' => 'aly', 'AL5G22920' => 'aly', 'AL6G33660' => 'aly', 'AL8G20720' => 'aly', 'Aqoxy1G00935' => 'aox', 'Aqoxy1G02094' => 'aox', 'Aqoxy2G01239' => 'aox', 'Aqoxy4G01870' => 'aox', 'Aqoxy7G00450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.36ZVTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71EM27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5D6C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH3WRE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3NCM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RIM768' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YB5YRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z36GDV' => 'arhy', 'AT1G08250' => 'ath', 'AT1G11790' => 'ath', 'AT2G27820' => 'ath', 'AT3G07630' => 'ath', 'AT3G44720' => 'ath', 'AT5G22630' => 'ath', 'ATR0693G304' => 'atr', 'ATR0794G109' => 'atr', 'ATR0820G120' => 'atr', 'ATR1159G064' => 'atr', 'Atru.chr10.2239' => 'acertr', 'Atru.chr3.3371' => 'acertr', 'Atru.chr6.3202' => 'acertr', 'AUR62006499' => 'cqu', 'AUR62012718' => 'cqu', 'AUR62021938' => 'cqu', 'AUR62023932' => 'cqu', 'AUR62025034' => 'cqu', 'AUR62025035' => 'cqu', 'AUR62038307' => 'cqu', 'AUR62043466' => 'cqu', 'BcaB02g10748' => 'bca', 'BcaB03g13231' => 'bca', 'BcaB03g14689' => 'bca', 'BcaB05g22716' => 'bca', 'BcaB06g28172' => 'bca', 'BcaB08g36413' => 'bca', 'BcaC01g02186' => 'bca', 'BcaC01g04272' => 'bca', 'BcaC02g08080' => 'bca', 'BcaC02g08227' => 'bca', 'BcaC03g13901' => 'bca', 'BcaC04g19593' => 'bca', 'BcaC04g20874' => 'bca', 'BcaC05g29557' => 'bca', 'BcaC06g35505' => 'bca', 'BcaC07g41954' => 'bca', 'BcaC07g41955' => 'bca', 'BcaC07g41956' => 'bca', 'BcaC07g42519' => 'bca', 'BcaC07g42520' => 'bca', 'BcaC07g42523' => 'bca', 'BcaC07g42524' => 'bca', 'BcaC07g42525' => 'bca', 'BcaC08g47480' => 'bca', 'BcaC08g47481' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00530' => 'bna', 'BolC2t07178H' => 'bol', 'BolC3t16567H' => 'bol', 'BolC4t27234H' => 'bol', 'BolC5t29728H' => 'bol', 'BolC5t34622H' => 'bol', 'BolC6t40321H' => 'bol', 'BolC7t42028H' => 'bol', 'BolC8t49125H' => 'bol', 'BolC8t52538H' => 'bol', 'BolC8t52539H' => 'bol', 'BolC9t56681H' => 'bol', 'BolC9t58266H' => 'bol', 'BolSC21t60294H' => 'bol', 'BraA02t05670Z' => 'bra', 'BraA03t12716Z' => 'bra', 'BraA04t17685Z' => 'bra', 'BraA05t22788Z' => 'bra', 'BraA06t24032Z' => 'bra', 'BraA06t25625Z' => 'bra', 'BraA07t27930Z' => 'bra', 'BraA08t35242Z' => 'bra', 'BraA09t38609Z' => 'bra', 'BraA10t43905Z' => 'bra', 'C02p11060' => 'bna', 'C03p42990' => 'bna', 'C03p67310' => 'bna', 'C04p56990' => 'bna', 'C04p58660' => 'bna', 'C05p09890' => 'bna', 'C05p59680' => 'bna', 'C06p19830' => 'bna', 'C06p53040' => 'bna', 'C07p15230' => 'bna', 'C08p50070' => 'bna', 'C08p50090' => 'bna', 'C09p38330' => 'bna', 'C09p53940' => 'bna', 'CAN.G1014.1' => 'can', 'CAN.G644.30' => 'can', 'CAN.G84.47' => 'can', 'CAN.G919.8' => 'can', 'CANSAT54G0113' => 'cansat', 'CANSAT54G1286' => 'cansat', 'CANSAT64G1020' => 'cansat', 'CARHR008080' => 'chi', 'CARHR008090' => 'chi', 'CARHR012130' => 'chi', 'CARHR038390' => 'chi', 'CARHR082330' => 'chi', 'CARHR120520' => 'chi', 'CARHR151470' => 'chi', 'CARHR190950' => 'chi', 'Carub.0001s0760' => 'cru', 'Carub.0001s1146' => 'cru', 'Carub.0003s0721' => 'cru', 'Carub.0004s0858' => 'cru', 'Carub.0005s1040' => 'cru', 'Carub.0006s2035' => 'cru', 'Carub.0015s0005' => 'cru', 'Ca_01607_v3' => 'car', 'Ca_01677_v3' => 'car', 'Ca_06087_v3' => 'car', 'Ca_19238_v3' => 'car', 'Ca_19373_v3' => 'car', 'Ca_21079_v3' => 'car', 'CBR_g54016' => 'cbr', 'CBR_g54018' => 'cbr', 'CBR_g54020' => 'cbr', 'Cc01_g09780' => 'ccan', 'Cc01_g11680' => 'ccan', 'Cc02_g15610' => 'ccan', 'Cc05_g04350' => 'ccan', 'Cc09_g01580' => 'ccan', 'CDE01G0795' => 'cde', 'CDE02G2024' => 'cde', 'CDE02G2260' => 'cde', 'CDE02G4561' => 'cde', 'CDE05G2733' => 'cde', 'CDE05G3422' => 'cde', 'CDE06G2003' => 'cde', 'CDE08G0576' => 'cde', 'CDE09G0048' => 'cde', 'CDE11G0805' => 'cde', 'Cfa003644' => 'cfa', 'Cfa006290' => 'cfa', 'Cfa010080' => 'cfa', 'Cfa011376' => 'cfa', 'Cfa011576' => 'cfa', 'Cfa011577' => 'cfa', 'Cfa014389' => 'cfa', 'Ciclev10006044m.g' => 'ccl', 'Ciclev10006954m.g' => 'ccl', 'Ciclev10015131m.g' => 'ccl', 'Ciclev10015580m.g' => 'ccl', 'Ciclev10028359m.g' => 'ccl', 'Ciclev10028573m.g' => 'ccl', 'CiPaw.03G159300' => 'cil', 'CiPaw.04G115100' => 'cil', 'CiPaw.09G092800' => 'cil', 'CiPaw.10G071800' => 'cil', 'CiPaw.13G105800' => 'cil', 'CiPaw.13G141000' => 'cil', 'CiPaw.14G103400' => 'cil', 'ClCG01G012700' => 'cla', 'ClCG01G012720' => 'cla', 'ClCG01G021920' => 'cla', 'ClCG02G008870' => 'cla', 'ClCG02G020840' => 'cla', 'ClCG02G021930' => 'cla', 'COL.COLO4_19302' => 'col', 'COL.COLO4_25262' => 'col', 'COL.COLO4_31788' => 'col', 'Cpa.g.c34684' => 'cpa', 'Cpa.g.c36520.1' => 'cpa', 'Cpa.g.c45626' => 'cpa', 'Cpa.g.sc121.17' => 'cpa', 'Cpa.g.sc13.22' => 'cpa', 'Cpa.g.sc87.88' => 'cpa', 'Cre06.g261800' => 'cre', 'CsaV3_1G014500' => 'csa', 'CsaV3_1G014510' => 'csa', 'CsaV3_2G034880' => 'csa', 'CsaV3_6G014760' => 'csa', 'CsaV3_6G021500' => 'csa', 'CsaV3_6G048980' => 'csa', 'CSS0002511' => 'camsi', 'CSS0007556' => 'camsi', 'CSS0008532' => 'camsi', 'CSS0009709' => 'camsi', 'CSS0010486' => 'camsi', 'CSS0016768' => 'camsi', 'CSS0023512' => 'camsi', 'CSS0025341' => 'camsi', 'CSS0027999' => 'camsi', 'CSS0028944' => 'camsi', 'CSS0032292' => 'camsi', 'CSS0032464' => 'camsi', 'CSS0037153' => 'camsi', 'CSS0039256' => 'camsi', 'CSS0048392' => 'camsi', 'CSS0050458' => 'camsi', 'DCAR_004224' => 'dca', 'DCAR_006147' => 'dca', 'DCAR_006465' => 'dca', 'DCAR_008159' => 'dca', 'DCAR_012164' => 'dca', 'DCAR_019764' => 'dca', 'Dinv05418' => 'din', 'Dinv10839' => 'din', 'Dinv12521' => 'din', 'Dinv13900' => 'din', 'Dinv29426' => 'din', 'Duzib150G0263' => 'dzi', 'Duzib168G1178' => 'dzi', 'Duzib168G1924' => 'dzi', 'Duzib170G0299' => 'dzi', 'Duzib170G0813' => 'dzi', 'Duzib235G1128' => 'dzi', 'Duzib248G1060' => 'dzi', 'ECA232G1910' => 'eca', 'ECA233G4621' => 'eca', 'ECA238G1216' => 'eca', 'ECA238G1784' => 'eca', 'ECA248G1242' => 'eca', 'EL10Ac8g20071' => 'bvu', 'EL10Ac9g21086' => 'bvu', 'EL10Ac9g22407' => 'bvu', 'EL10Ac9g22412' => 'bvu', 'Eucgr.A01119' => 'egr', 'Eucgr.E04043' => 'egr', 'Eucgr.J00428' => 'egr', 'Eucgr.J00958' => 'egr', 'FAN11G3091' => 'fan', 'FAN11G3651' => 'fan', 'FAN16G2566' => 'fan', 'FAN21G3155' => 'fan', 'FAN21G3400' => 'fan', 'FAN21G3543' => 'fan', 'FAN25G0234' => 'fan', 'FAN25G1422' => 'fan', 'FAN25G3392' => 'fan', 'FvH4_3g01940' => 'fve', 'FvH4_3g29870' => 'fve', 'FvH4_3g33680' => 'fve', 'Glyma.09G004200' => 'gma', 'Glyma.11G151288' => 'gma', 'Glyma.11G189100' => 'gma', 'Glyma.12G072500' => 'gma', 'Glyma.12G085500' => 'gma', 'Glyma.12G181800' => 'gma', 'Glyma.12G193000' => 'gma', 'Glyma.13G309300' => 'gma', 'Glyma.13G319000' => 'gma', 'Glyma.17G012600' => 'gma', 'Gohir.A06G148600' => 'ghi', 'Gohir.A07G115800' => 'ghi', 'Gohir.A08G003600' => 'ghi', 'Gohir.A09G093300' => 'ghi', 'Gohir.A09G105400' => 'ghi', 'Gohir.A09G105500' => 'ghi', 'Gohir.D06G154600' => 'ghi', 'Gohir.D07G120200' => 'ghi', 'Gohir.D08G013900' => 'ghi', 'Gohir.D09G093100' => 'ghi', 'Gohir.D09G102200' => 'ghi', 'Gohir.D09G102300' => 'ghi', 'Gorai.001G129400' => 'gra', 'Gorai.004G008200' => 'gra', 'Gorai.006G109800' => 'gra', 'Gorai.006G119500' => 'gra', 'Gorai.006G121300' => 'gra', 'Gorai.010G180700' => 'gra', 'GSVIVG01012716001' => 'vvi', 'GSVIVG01025118001' => 'vvi', 'GSVIVG01030439001' => 'vvi', 'GSVIVG01031397001' => 'vvi', 'HanXRQChr01g0004201' => 'han', 'HanXRQChr02g0054941' => 'han', 'HanXRQChr05g0141811' => 'han', 'HanXRQChr07g0197751' => 'han', 'HanXRQChr11g0346691' => 'han', 'HanXRQChr13g0396971' => 'han', 'HanXRQChr14g0432951' => 'han', 'HanXRQChr14g0452001' => 'han', 'HanXRQChr15g0496681' => 'han', 'HanXRQChr17g0557491' => 'han', 'HanXRQChr17g0557501' => 'han', 'Haze_06809' => 'cav', 'Haze_12852' => 'cav', 'Haze_15850' => 'cav', 'Haze_23446' => 'cav', 'Haze_23942' => 'cav', 'Haze_23943' => 'cav', 'Hma1.2p1_0091F.1_g046450' => 'hma', 'Hma1.2p1_0128F.1_g059910' => 'hma', 'Hma1.2p1_0249F.1_g102260' => 'hma', 'Hma1.2p1_0453F.1_g156190' => 'hma', 'Hma1.2p1_0695F.1_g204380' => 'hma', 'Hma1.2p1_0749F.1_g212650' => 'hma', 'Hma1.2p1_2156F.1_g315420' => 'hma', 'Hma1.2p1_2686F.1_g326940' => 'hma', 'HPP92_006428' => 'vpl', 'HPP92_012069' => 'vpl', 'HPP92_014129' => 'vpl', 'HPP92_014133' => 'vpl', 'HPP92_017315' => 'vpl', 'HPP92_026445' => 'vpl', 'HPP92_026446' => 'vpl', 'Hund00774' => 'sun', 'Hund07682' => 'sun', 'Hund21413' => 'sun', 'Hund23462' => 'sun', 'Hund23463' => 'sun', 'Lalb_Chr03g0027911' => 'lal', 'Lalb_Chr13g0304271' => 'lal', 'Lalb_Chr19g0137471' => 'lal', 'Lalb_Chr22g0350651' => 'lal', 'Lalb_Chr24g0395151' => 'lal', 'Lj1A1231T40' => 'lonja', 'Lj1A221T48' => 'lonja', 'Lj1C924T12' => 'lonja', 'Lj2C993G6' => 'lonja', 'Lj3g0005790' => 'lja', 'Lj3g0015432' => 'lja', 'Lj3g0017722' => 'lja', 'Lj3g0018497' => 'lja', 'Lj4g0025071' => 'lja', 'Lsat_1_v5_gn_1_129680' => 'lsa', 'Lsat_1_v5_gn_2_25321' => 'lsa', 'Lsat_1_v5_gn_2_95461' => 'lsa', 'Lsat_1_v5_gn_4_159620' => 'lsa', 'Lsat_1_v5_gn_6_41301' => 'lsa', 'Lsat_1_v5_gn_6_74660' => 'lsa', 'Lsat_1_v5_gn_7_11520' => 'lsa', 'Lsat_1_v5_gn_9_67680' => 'lsa', 'Manes.04G008300' => 'mes', 'Manes.04G008400' => 'mes', 'Manes.04G026500' => 'mes', 'Manes.10G135300' => 'mes', 'Manes.11G157300' => 'mes', 'Manes.12G074000' => 'mes', 'Manes.16G006200' => 'mes', 'Manes.17G026400' => 'mes', 'Mapoly0024s0086' => 'mpo', 'Mapoly0024s0087' => 'mpo', 'Mapoly0071s0057' => 'mpo', 'Mapoly0204s0012' => 'mpo', 'MBI04_g37681_MAGBIO' => 'mbi', 'MBI05_g17779_MAGBIO' => 'mbi', 'MBI12_g31184_MAGBIO' => 'mbi', 'MBI17_g11083_MAGBIO' => 'mbi', 'MBI18_g03883_MAGBIO' => 'mbi', 'MBI18_g28940_MAGBIO' => 'mbi', 'MCO01G690' => 'mco', 'MD03G1109900' => 'mdo', 'MD03G1134800' => 'mdo', 'MD05G1348000' => 'mdo', 'MD10G1322400' => 'mdo', 'MD11G1123300' => 'mdo', 'MD11G1157600' => 'mdo', 'Medtr2g084875' => 'mtr', 'Medtr2g088130' => 'mtr', 'Medtr4g055310' => 'mtr', 'Medtr4g061070' => 'mtr', 'Medtr4g132250' => 'mtr', 'MELO3C004795.2' => 'cme', 'MELO3C004797.2' => 'cme', 'MELO3C007396.2' => 'cme', 'MELO3C019277.2' => 'cme', 'MELO3C021449.2' => 'cme', 'MELO3C025736.2' => 'cme', 'Migut.D02175' => 'egut', 'Migut.H01573' => 'egut', 'Migut.M01327' => 'egut', 'Migut.N02513' => 'egut', 'MSTRG.14638' => 'ama', 'MSTRG.18632' => 'ama', 'MSTRG.7203' => 'ama', 'Nitab4.5_0000533g0140' => 'nta', 'Nitab4.5_0000888g0150' => 'nta', 'Nitab4.5_0001453g0040' => 'nta', 'Nitab4.5_0002827g0090' => 'nta', 'Nitab4.5_0003082g0040' => 'nta', 'Nitab4.5_0007799g0040' => 'nta', 'Nitab4.5_0008983g0010' => 'nta', 'Nitab4.5_0009017g0020' => 'nta', 'Nn1g02132' => 'nnu', 'Nn1g03492' => 'nnu', 'Nn1g03493' => 'nnu', 'Nn1g03494' => 'nnu', 'Nn1g07164' => 'nnu', 'Nn1g07291' => 'nnu', 'Nn2g10655' => 'nnu', 'Nn2g11652' => 'nnu', 'Nn2g14008' => 'nnu', 'Nn3g17476' => 'nnu', 'Nn3g17477' => 'nnu', 'Nn4g22370' => 'nnu', 'Nn4g25255' => 'nnu', 'Nn5g27755' => 'nnu', 'Nn6g34260' => 'nnu', 'Nn6g35041' => 'nnu', 'Oeu005924.1' => 'oeu', 'Oeu008383.1' => 'oeu', 'Oeu014928.1' => 'oeu', 'Oeu019889.1' => 'oeu', 'Oeu022271.1' => 'oeu', 'Oeu025271.1' => 'oeu', 'Oeu036302.1' => 'oeu', 'Oeu044100.1' => 'oeu', 'Os01g0528300' => 'osa', 'Os03g0286200' => 'osa', 'Os04g0406600' => 'osa', 'Os07g0512000' => 'osa', 'Os07g0694600' => 'osa', 'Os08g0411000' => 'osa', 'Os09g0565700' => 'osa', 'Os09g0566050' => 'osa', 'Os10g0523700' => 'osa', 'Peaxi162Scf00002g00514' => 'pax', 'Peaxi162Scf00047g01817' => 'pax', 'Peaxi162Scf00114g00001' => 'pax', 'Peaxi162Scf00147g00613' => 'pax', 'Peaxi162Scf00389g00425' => 'pax', 'PGR042G1139' => 'pgr', 'PGR042G3273' => 'pgr', 'PGR102G2180' => 'pgr', 'PGR119G0234' => 'pgr', 'PGR119G0668' => 'pgr', 'PGSC0003DMG400007122' => 'stu', 'PGSC0003DMG400016478' => 'stu', 'PGSC0003DMG400025374' => 'stu', 'PGSC0003DMG400026536' => 'stu', 'Phvul.003G079600' => 'pvu', 'Phvul.005G115600' => 'pvu', 'Phvul.005G127100' => 'pvu', 'Phvul.006G149500' => 'pvu', 'Phvul.006G149600' => 'pvu', 'Phvul.011G071800' => 'pvu', 'Phvul.011G090400' => 'pvu', 'Potri.004G013400' => 'ptr', 'Potri.004G188100' => 'ptr', 'Potri.008G195500' => 'ptr', 'Potri.009G148800' => 'ptr', 'Potri.011G004700' => 'ptr', 'Pp3c17_22810' => 'ppa', 'Pp3c18_4480' => 'ppa', 'Pp3c19_13030' => 'ppa', 'Pp3c1_33620' => 'ppa', 'Pp3c2_9380' => 'ppa', 'PRCOL_00001023' => 'pco', 'Prupe.3G216300' => 'ppe', 'Prupe.4G019500' => 'ppe', 'Prupe.6G092500' => 'ppe', 'Prupe.6G119200' => 'ppe', 'Psat0s1945g0080' => 'psa', 'Psat0s4167g0040' => 'psa', 'Psat1g185800' => 'psa', 'Psat4g006440' => 'psa', 'Psat4g006480' => 'psa', 'Psat4g168120' => 'psa', 'Psat5g255680' => 'psa', 'Psat5g261760' => 'psa', 'Psat7g222120' => 'psa', 'PSO063G7252' => 'pso', 'PSO170G4778' => 'pso', 'PSO210G2249' => 'pso', 'PSO339G2411' => 'pso', 'PSO339G2457' => 'pso', 'PSO339G2854' => 'pso', 'PSO339G4288' => 'pso', 'PSO339G4615' => 'pso', 'PSO384G2796' => 'pso', 'PSO384G2940' => 'pso', 'PSO384G4227' => 'pso', 'PSO478G1425' => 'pso', 'PSO541G3863' => 'pso', 'PSO675G0507' => 'pso', 'PSO782G0338' => 'pso', 'PSO832G0644' => 'pso', 'QL01p013664' => 'qlo', 'QL01p036598' => 'qlo', 'QL05p072984' => 'qlo', 'QL08p005768' => 'qlo', 'QL08p032743' => 'qlo', 'QL93p0073_0439' => 'qlo', 'QL93p0073_0444' => 'qlo', 'RcHm_v2.0_Chr5g0002851' => 'rch', 'RcHm_v2.0_Chr5g0055201' => 'rch', 'RcHm_v2.0_Chr5g0061191' => 'rch', 'RcHm_v2.0_Chr7g0203231' => 'rch', 'Rhsim01G0208100' => 'rsi', 'Rhsim01G0208200' => 'rsi', 'Rhsim02G0106500' => 'rsi', 'Rhsim03G0107900' => 'rsi', 'Rhsim06G0163400' => 'rsi', 'Rhsim13G0105200' => 'rsi', 'Sabra04G0006300' => 'sbr', 'Sabra04G0127000' => 'sbr', 'Sabra08G0148700' => 'sbr', 'Sabra09G0117400' => 'sbr', 'SalBow1G3326' => 'sbo', 'SalBow3G3228' => 'sbo', 'SalBow6G1634' => 'sbo', 'SalBow6G3603' => 'sbo', 'SalBow6G5266' => 'sbo', 'SalBow7G2265' => 'sbo', 'SalBow8G0850' => 'sbo', 'SalBow8G2592' => 'sbo', 'Sc05g0009240' => 'sci', 'Sc12g0002300' => 'sci', 'Sc21g0000100' => 'sci', 'Sc21g0004720' => 'sci', 'Sed0002949' => 'sed', 'Sed0004114' => 'sed', 'Sed0004306' => 'sed', 'Sed0006172' => 'sed', 'Sed0008413' => 'sed', 'Sed0013809' => 'sed', 'Sed0019556' => 'sed', 'SEGI_03570' => 'sgi', 'SEGI_07859' => 'sgi', 'SEGI_15042' => 'sgi', 'SEGI_16263' => 'sgi', 'SEGI_16552' => 'sgi', 'SEGI_24331' => 'sgi', 'SEGI_27316' => 'sgi', 'SEGI_29521' => 'sgi', 'SEGI_41342' => 'sgi', 'SGA_v2.0_scaffold27G11617' => 'sas', 'SGA_v2.0_scaffold316G48428' => 'sas', 'SGA_v2.0_scaffold49G18261' => 'sas', 'SGA_v2.0_scaffold7G03831' => 'sas', 'SGA_v2.0_scaffold93G28359' => 'sas', 'SHI02210' => 'shi', 'SHI06028' => 'shi', 'SHI06321' => 'shi', 'SMO111G0012' => 'smo', 'SMO228G0080' => 'smo', 'SMO356G0756' => 'smo', 'Solyc02g080620.3' => 'sly', 'Solyc06g074530.1' => 'sly', 'Solyc11g066890.1' => 'sly', 'Solyc11g072520.3' => 'sly', 'Sopen02g025330' => 'spe', 'Sopen06g031000' => 'spe', 'Sopen09g008240' => 'spe', 'Sopen09g025210' => 'spe', 'Sopen11g026600' => 'spe', 'Sopen11g030170' => 'spe', 'Sp1g10420' => 'spa', 'Sp3g06570' => 'spa', 'Sp4g10660' => 'spa', 'Sp5g16460' => 'spa', 'Sp6g22710' => 'spa', 'TAR365G0112' => 'tar', 'TAR369G0717' => 'tar', 'TAR374G0976' => 'tar', 'TAR623G1128' => 'tar', 'TAR626G1937' => 'tar', 'TAR627G0123' => 'tar', 'TAR628G0305' => 'tar', 'TAR636G1176' => 'tar', 'TAR636G2442' => 'tar', 'THA.LOC104800556' => 'tha', 'THA.LOC104809501' => 'tha', 'THA.LOC104815126' => 'tha', 'THA.LOC104815732' => 'tha', 'THA.LOC104823528' => 'tha', 'Thecc.02G365600' => 'tca', 'Thecc.06G222300' => 'tca', 'Thecc.09G261800' => 'tca', 'Thecc.09G291400' => 'tca', 'Thhalv10003028m.g' => 'esa', 'Thhalv10007886m.g' => 'esa', 'Thhalv10016085m.g' => 'esa', 'Thhalv10016681m.g' => 'esa', 'Thhalv10020951m.g' => 'esa', 'TPR.G15598' => 'tpr', 'TPR.G29305' => 'tpr', 'TPR.G32395' => 'tpr', 'TPR.G36998' => 'tpr', 'TPR.G4227' => 'tpr', 'TWI18G1433' => 'twi', 'TWI31G0755' => 'twi', 'TWI38G0912' => 'twi', 'TWI75G1097' => 'twi', 'TWI75G1619' => 'twi', 'TWI79G1336' => 'twi', 'unitig_0.g943' => 'ugi', 'unitig_0.g944' => 'ugi', 'unitig_22.g6646' => 'ugi', 'unitig_37.g12681' => 'ugi', 'unitig_8.g3290' => 'ugi', 'vmacro03278' => 'vma', 'vmacro12197' => 'vma', 'vmacro14478' => 'vma', 'vmacro15787' => 'vma', 'vmacro15789' => 'vma', 'vmacro15790' => 'vma', 'vmacro15806' => 'vma', 'vmacro22907' => 'vma', 'vmacro22908' => 'vma', 'vmacro22909' => 'vma', 'vmacro23108' => 'vma', 'VMungo0540G0540' => 'vmu', 'VMungo0540G2468' => 'vmu', 'VMungo1080G0390' => 'vmu', 'VMungo1080G1165' => 'vmu', 'VMungo1127G0170' => 'vmu', 'VMungo1127G2099' => 'vmu', 'VMungo1215G3013' => 'vmu', 'Zm00001eb013110' => 'zma', 'Zm00001eb084260' => 'zma', 'Zm00001eb096110' => 'zma', 'Zm00001eb217510' => 'zma', 'Zm00001eb322550' => 'zma', 'Zm00001eb390770' => 'zma', 'Zm00001eb397170' => 'zma', 'Zm00001eb404610' => 'zma', 'Zm00001eb421790' => 'zma' ), 'gf_id' => 'HOM05D000911', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000911' ), 'data_identifier' => 'HOM05D000911', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000911', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27780' => 'bna', 'A03p35380' => 'bna', 'A04p21160' => 'bna', 'A05p40570' => 'bna', 'A06p26900' => 'bna', 'A08p33230' => 'bna', 'A09p65960' => 'bna', 'A10p18290' => 'bna', 'Aa31LG1G12990' => 'aar', 'Aa31LG1G2980' => 'aar', 'Aa31LG4G14320' => 'aar', 'Aa31LG7G11800' => 'aar', 'Aa31sc36G50' => 'aar', 'Aa31sc36G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3721' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5459' => 'aag', 'Actinidia03028' => 'ach', 'Actinidia03753' => 'ach', 'Actinidia04187' => 'ach', 'Actinidia05509' => 'ach', 'Actinidia24180' => 'ach', 'Actinidia26906' => 'ach', 'Actinidia37097' => 'ach', 'Actinidia38249' => 'ach', 'Ah.01g003470' => 'amhyb', 'Ah.01g004580' => 'amhyb', 'Ah.01g014850' => 'amhyb', 'Ah.01g016830' => 'amhyb', 'Ah.14g088000' => 'amhyb', 'AL1G22980' => 'aly', 'AL3G18990' => 'aly', 'AL4G22440' => 'aly', 'AL4G33180' => 'aly', 'AL5G22920' => 'aly', 'AL6G33660' => 'aly', 'AL8G20720' => 'aly', 'Aqoxy1G00935' => 'aox', 'Aqoxy1G02094' => 'aox', 'Aqoxy2G01239' => 'aox', 'Aqoxy4G01870' => 'aox', 'Aqoxy7G00450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.36ZVTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71EM27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5D6C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH3WRE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3NCM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RIM768' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YB5YRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z36GDV' => 'arhy', 'AT1G08250' => 'ath', 'AT1G11790' => 'ath', 'AT2G27820' => 'ath', 'AT3G07630' => 'ath', 'AT3G44720' => 'ath', 'AT5G22630' => 'ath', 'ATR0693G304' => 'atr', 'ATR0794G109' => 'atr', 'ATR0820G120' => 'atr', 'ATR1159G064' => 'atr', 'Atru.chr10.2239' => 'acertr', 'Atru.chr3.3371' => 'acertr', 'Atru.chr6.3202' => 'acertr', 'AUR62006499' => 'cqu', 'AUR62012718' => 'cqu', 'AUR62021938' => 'cqu', 'AUR62023932' => 'cqu', 'AUR62025034' => 'cqu', 'AUR62025035' => 'cqu', 'AUR62038307' => 'cqu', 'AUR62043466' => 'cqu', 'BcaB02g10748' => 'bca', 'BcaB03g13231' => 'bca', 'BcaB03g14689' => 'bca', 'BcaB05g22716' => 'bca', 'BcaB06g28172' => 'bca', 'BcaB08g36413' => 'bca', 'BcaC01g02186' => 'bca', 'BcaC01g04272' => 'bca', 'BcaC02g08080' => 'bca', 'BcaC02g08227' => 'bca', 'BcaC03g13901' => 'bca', 'BcaC04g19593' => 'bca', 'BcaC04g20874' => 'bca', 'BcaC05g29557' => 'bca', 'BcaC06g35505' => 'bca', 'BcaC07g41954' => 'bca', 'BcaC07g41955' => 'bca', 'BcaC07g41956' => 'bca', 'BcaC07g42519' => 'bca', 'BcaC07g42520' => 'bca', 'BcaC07g42523' => 'bca', 'BcaC07g42524' => 'bca', 'BcaC07g42525' => 'bca', 'BcaC08g47480' => 'bca', 'BcaC08g47481' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00530' => 'bna', 'BolC2t07178H' => 'bol', 'BolC3t16567H' => 'bol', 'BolC4t27234H' => 'bol', 'BolC5t29728H' => 'bol', 'BolC5t34622H' => 'bol', 'BolC6t40321H' => 'bol', 'BolC7t42028H' => 'bol', 'BolC8t49125H' => 'bol', 'BolC8t52538H' => 'bol', 'BolC8t52539H' => 'bol', 'BolC9t56681H' => 'bol', 'BolC9t58266H' => 'bol', 'BolSC21t60294H' => 'bol', 'BraA02t05670Z' => 'bra', 'BraA03t12716Z' => 'bra', 'BraA04t17685Z' => 'bra', 'BraA05t22788Z' => 'bra', 'BraA06t24032Z' => 'bra', 'BraA06t25625Z' => 'bra', 'BraA07t27930Z' => 'bra', 'BraA08t35242Z' => 'bra', 'BraA09t38609Z' => 'bra', 'BraA10t43905Z' => 'bra', 'C02p11060' => 'bna', 'C03p42990' => 'bna', 'C03p67310' => 'bna', 'C04p56990' => 'bna', 'C04p58660' => 'bna', 'C05p09890' => 'bna', 'C05p59680' => 'bna', 'C06p19830' => 'bna', 'C06p53040' => 'bna', 'C07p15230' => 'bna', 'C08p50070' => 'bna', 'C08p50090' => 'bna', 'C09p38330' => 'bna', 'C09p53940' => 'bna', 'CAN.G1014.1' => 'can', 'CAN.G644.30' => 'can', 'CAN.G84.47' => 'can', 'CAN.G919.8' => 'can', 'CANSAT54G0113' => 'cansat', 'CANSAT54G1286' => 'cansat', 'CANSAT64G1020' => 'cansat', 'CARHR008080' => 'chi', 'CARHR008090' => 'chi', 'CARHR012130' => 'chi', 'CARHR038390' => 'chi', 'CARHR082330' => 'chi', 'CARHR120520' => 'chi', 'CARHR151470' => 'chi', 'CARHR190950' => 'chi', 'Carub.0001s0760' => 'cru', 'Carub.0001s1146' => 'cru', 'Carub.0003s0721' => 'cru', 'Carub.0004s0858' => 'cru', 'Carub.0005s1040' => 'cru', 'Carub.0006s2035' => 'cru', 'Carub.0015s0005' => 'cru', 'Ca_01607_v3' => 'car', 'Ca_01677_v3' => 'car', 'Ca_06087_v3' => 'car', 'Ca_19238_v3' => 'car', 'Ca_19373_v3' => 'car', 'Ca_21079_v3' => 'car', 'CBR_g54016' => 'cbr', 'CBR_g54018' => 'cbr', 'CBR_g54020' => 'cbr', 'Cc01_g09780' => 'ccan', 'Cc01_g11680' => 'ccan', 'Cc02_g15610' => 'ccan', 'Cc05_g04350' => 'ccan', 'Cc09_g01580' => 'ccan', 'CDE01G0795' => 'cde', 'CDE02G2024' => 'cde', 'CDE02G2260' => 'cde', 'CDE02G4561' => 'cde', 'CDE05G2733' => 'cde', 'CDE05G3422' => 'cde', 'CDE06G2003' => 'cde', 'CDE08G0576' => 'cde', 'CDE09G0048' => 'cde', 'CDE11G0805' => 'cde', 'Cfa003644' => 'cfa', 'Cfa006290' => 'cfa', 'Cfa010080' => 'cfa', 'Cfa011376' => 'cfa', 'Cfa011576' => 'cfa', 'Cfa011577' => 'cfa', 'Cfa014389' => 'cfa', 'Ciclev10006044m.g' => 'ccl', 'Ciclev10006954m.g' => 'ccl', 'Ciclev10015131m.g' => 'ccl', 'Ciclev10015580m.g' => 'ccl', 'Ciclev10028359m.g' => 'ccl', 'Ciclev10028573m.g' => 'ccl', 'CiPaw.03G159300' => 'cil', 'CiPaw.04G115100' => 'cil', 'CiPaw.09G092800' => 'cil', 'CiPaw.10G071800' => 'cil', 'CiPaw.13G105800' => 'cil', 'CiPaw.13G141000' => 'cil', 'CiPaw.14G103400' => 'cil', 'ClCG01G012700' => 'cla', 'ClCG01G012720' => 'cla', 'ClCG01G021920' => 'cla', 'ClCG02G008870' => 'cla', 'ClCG02G020840' => 'cla', 'ClCG02G021930' => 'cla', 'COL.COLO4_19302' => 'col', 'COL.COLO4_25262' => 'col', 'COL.COLO4_31788' => 'col', 'Cpa.g.c34684' => 'cpa', 'Cpa.g.c36520.1' => 'cpa', 'Cpa.g.c45626' => 'cpa', 'Cpa.g.sc121.17' => 'cpa', 'Cpa.g.sc13.22' => 'cpa', 'Cpa.g.sc87.88' => 'cpa', 'Cre06.g261800' => 'cre', 'CsaV3_1G014500' => 'csa', 'CsaV3_1G014510' => 'csa', 'CsaV3_2G034880' => 'csa', 'CsaV3_6G014760' => 'csa', 'CsaV3_6G021500' => 'csa', 'CsaV3_6G048980' => 'csa', 'CSS0002511' => 'camsi', 'CSS0007556' => 'camsi', 'CSS0008532' => 'camsi', 'CSS0009709' => 'camsi', 'CSS0010486' => 'camsi', 'CSS0016768' => 'camsi', 'CSS0023512' => 'camsi', 'CSS0025341' => 'camsi', 'CSS0027999' => 'camsi', 'CSS0028944' => 'camsi', 'CSS0032292' => 'camsi', 'CSS0032464' => 'camsi', 'CSS0037153' => 'camsi', 'CSS0039256' => 'camsi', 'CSS0048392' => 'camsi', 'CSS0050458' => 'camsi', 'DCAR_004224' => 'dca', 'DCAR_006147' => 'dca', 'DCAR_006465' => 'dca', 'DCAR_008159' => 'dca', 'DCAR_012164' => 'dca', 'DCAR_019764' => 'dca', 'Dinv05418' => 'din', 'Dinv10839' => 'din', 'Dinv12521' => 'din', 'Dinv13900' => 'din', 'Dinv29426' => 'din', 'Duzib150G0263' => 'dzi', 'Duzib168G1178' => 'dzi', 'Duzib168G1924' => 'dzi', 'Duzib170G0299' => 'dzi', 'Duzib170G0813' => 'dzi', 'Duzib235G1128' => 'dzi', 'Duzib248G1060' => 'dzi', 'ECA232G1910' => 'eca', 'ECA233G4621' => 'eca', 'ECA238G1216' => 'eca', 'ECA238G1784' => 'eca', 'ECA248G1242' => 'eca', 'EL10Ac8g20071' => 'bvu', 'EL10Ac9g21086' => 'bvu', 'EL10Ac9g22407' => 'bvu', 'EL10Ac9g22412' => 'bvu', 'Eucgr.A01119' => 'egr', 'Eucgr.E04043' => 'egr', 'Eucgr.J00428' => 'egr', 'Eucgr.J00958' => 'egr', 'FAN11G3091' => 'fan', 'FAN11G3651' => 'fan', 'FAN16G2566' => 'fan', 'FAN21G3155' => 'fan', 'FAN21G3400' => 'fan', 'FAN21G3543' => 'fan', 'FAN25G0234' => 'fan', 'FAN25G1422' => 'fan', 'FAN25G3392' => 'fan', 'FvH4_3g01940' => 'fve', 'FvH4_3g29870' => 'fve', 'FvH4_3g33680' => 'fve', 'Glyma.09G004200' => 'gma', 'Glyma.11G151288' => 'gma', 'Glyma.11G189100' => 'gma', 'Glyma.12G072500' => 'gma', 'Glyma.12G085500' => 'gma', 'Glyma.12G181800' => 'gma', 'Glyma.12G193000' => 'gma', 'Glyma.13G309300' => 'gma', 'Glyma.13G319000' => 'gma', 'Glyma.17G012600' => 'gma', 'Gohir.A06G148600' => 'ghi', 'Gohir.A07G115800' => 'ghi', 'Gohir.A08G003600' => 'ghi', 'Gohir.A09G093300' => 'ghi', 'Gohir.A09G105400' => 'ghi', 'Gohir.A09G105500' => 'ghi', 'Gohir.D06G154600' => 'ghi', 'Gohir.D07G120200' => 'ghi', 'Gohir.D08G013900' => 'ghi', 'Gohir.D09G093100' => 'ghi', 'Gohir.D09G102200' => 'ghi', 'Gohir.D09G102300' => 'ghi', 'Gorai.001G129400' => 'gra', 'Gorai.004G008200' => 'gra', 'Gorai.006G109800' => 'gra', 'Gorai.006G119500' => 'gra', 'Gorai.006G121300' => 'gra', 'Gorai.010G180700' => 'gra', 'GSVIVG01012716001' => 'vvi', 'GSVIVG01025118001' => 'vvi', 'GSVIVG01030439001' => 'vvi', 'GSVIVG01031397001' => 'vvi', 'HanXRQChr01g0004201' => 'han', 'HanXRQChr02g0054941' => 'han', 'HanXRQChr05g0141811' => 'han', 'HanXRQChr07g0197751' => 'han', 'HanXRQChr11g0346691' => 'han', 'HanXRQChr13g0396971' => 'han', 'HanXRQChr14g0432951' => 'han', 'HanXRQChr14g0452001' => 'han', 'HanXRQChr15g0496681' => 'han', 'HanXRQChr17g0557491' => 'han', 'HanXRQChr17g0557501' => 'han', 'Haze_06809' => 'cav', 'Haze_12852' => 'cav', 'Haze_15850' => 'cav', 'Haze_23446' => 'cav', 'Haze_23942' => 'cav', 'Haze_23943' => 'cav', 'Hma1.2p1_0091F.1_g046450' => 'hma', 'Hma1.2p1_0128F.1_g059910' => 'hma', 'Hma1.2p1_0249F.1_g102260' => 'hma', 'Hma1.2p1_0453F.1_g156190' => 'hma', 'Hma1.2p1_0695F.1_g204380' => 'hma', 'Hma1.2p1_0749F.1_g212650' => 'hma', 'Hma1.2p1_2156F.1_g315420' => 'hma', 'Hma1.2p1_2686F.1_g326940' => 'hma', 'HPP92_006428' => 'vpl', 'HPP92_012069' => 'vpl', 'HPP92_014129' => 'vpl', 'HPP92_014133' => 'vpl', 'HPP92_017315' => 'vpl', 'HPP92_026445' => 'vpl', 'HPP92_026446' => 'vpl', 'Hund00774' => 'sun', 'Hund07682' => 'sun', 'Hund21413' => 'sun', 'Hund23462' => 'sun', 'Hund23463' => 'sun', 'Lalb_Chr03g0027911' => 'lal', 'Lalb_Chr13g0304271' => 'lal', 'Lalb_Chr19g0137471' => 'lal', 'Lalb_Chr22g0350651' => 'lal', 'Lalb_Chr24g0395151' => 'lal', 'Lj1A1231T40' => 'lonja', 'Lj1A221T48' => 'lonja', 'Lj1C924T12' => 'lonja', 'Lj2C993G6' => 'lonja', 'Lj3g0005790' => 'lja', 'Lj3g0015432' => 'lja', 'Lj3g0017722' => 'lja', 'Lj3g0018497' => 'lja', 'Lj4g0025071' => 'lja', 'Lsat_1_v5_gn_1_129680' => 'lsa', 'Lsat_1_v5_gn_2_25321' => 'lsa', 'Lsat_1_v5_gn_2_95461' => 'lsa', 'Lsat_1_v5_gn_4_159620' => 'lsa', 'Lsat_1_v5_gn_6_41301' => 'lsa', 'Lsat_1_v5_gn_6_74660' => 'lsa', 'Lsat_1_v5_gn_7_11520' => 'lsa', 'Lsat_1_v5_gn_9_67680' => 'lsa', 'Manes.04G008300' => 'mes', 'Manes.04G008400' => 'mes', 'Manes.04G026500' => 'mes', 'Manes.10G135300' => 'mes', 'Manes.11G157300' => 'mes', 'Manes.12G074000' => 'mes', 'Manes.16G006200' => 'mes', 'Manes.17G026400' => 'mes', 'Mapoly0024s0086' => 'mpo', 'Mapoly0024s0087' => 'mpo', 'Mapoly0071s0057' => 'mpo', 'Mapoly0204s0012' => 'mpo', 'MBI04_g37681_MAGBIO' => 'mbi', 'MBI05_g17779_MAGBIO' => 'mbi', 'MBI12_g31184_MAGBIO' => 'mbi', 'MBI17_g11083_MAGBIO' => 'mbi', 'MBI18_g03883_MAGBIO' => 'mbi', 'MBI18_g28940_MAGBIO' => 'mbi', 'MCO01G690' => 'mco', 'MD03G1109900' => 'mdo', 'MD03G1134800' => 'mdo', 'MD05G1348000' => 'mdo', 'MD10G1322400' => 'mdo', 'MD11G1123300' => 'mdo', 'MD11G1157600' => 'mdo', 'Medtr2g084875' => 'mtr', 'Medtr2g088130' => 'mtr', 'Medtr4g055310' => 'mtr', 'Medtr4g061070' => 'mtr', 'Medtr4g132250' => 'mtr', 'MELO3C004795.2' => 'cme', 'MELO3C004797.2' => 'cme', 'MELO3C007396.2' => 'cme', 'MELO3C019277.2' => 'cme', 'MELO3C021449.2' => 'cme', 'MELO3C025736.2' => 'cme', 'Migut.D02175' => 'egut', 'Migut.H01573' => 'egut', 'Migut.M01327' => 'egut', 'Migut.N02513' => 'egut', 'MSTRG.14638' => 'ama', 'MSTRG.18632' => 'ama', 'MSTRG.7203' => 'ama', 'Nitab4.5_0000533g0140' => 'nta', 'Nitab4.5_0000888g0150' => 'nta', 'Nitab4.5_0001453g0040' => 'nta', 'Nitab4.5_0002827g0090' => 'nta', 'Nitab4.5_0003082g0040' => 'nta', 'Nitab4.5_0007799g0040' => 'nta', 'Nitab4.5_0008983g0010' => 'nta', 'Nitab4.5_0009017g0020' => 'nta', 'Nn1g02132' => 'nnu', 'Nn1g03492' => 'nnu', 'Nn1g03493' => 'nnu', 'Nn1g03494' => 'nnu', 'Nn1g07164' => 'nnu', 'Nn1g07291' => 'nnu', 'Nn2g10655' => 'nnu', 'Nn2g11652' => 'nnu', 'Nn2g14008' => 'nnu', 'Nn3g17476' => 'nnu', 'Nn3g17477' => 'nnu', 'Nn4g22370' => 'nnu', 'Nn4g25255' => 'nnu', 'Nn5g27755' => 'nnu', 'Nn6g34260' => 'nnu', 'Nn6g35041' => 'nnu', 'Oeu005924.1' => 'oeu', 'Oeu008383.1' => 'oeu', 'Oeu014928.1' => 'oeu', 'Oeu019889.1' => 'oeu', 'Oeu022271.1' => 'oeu', 'Oeu025271.1' => 'oeu', 'Oeu036302.1' => 'oeu', 'Oeu044100.1' => 'oeu', 'Os01g0528300' => 'osa', 'Os03g0286200' => 'osa', 'Os04g0406600' => 'osa', 'Os07g0512000' => 'osa', 'Os07g0694600' => 'osa', 'Os08g0411000' => 'osa', 'Os09g0565700' => 'osa', 'Os09g0566050' => 'osa', 'Os10g0523700' => 'osa', 'Peaxi162Scf00002g00514' => 'pax', 'Peaxi162Scf00047g01817' => 'pax', 'Peaxi162Scf00114g00001' => 'pax', 'Peaxi162Scf00147g00613' => 'pax', 'Peaxi162Scf00389g00425' => 'pax', 'PGR042G1139' => 'pgr', 'PGR042G3273' => 'pgr', 'PGR102G2180' => 'pgr', 'PGR119G0234' => 'pgr', 'PGR119G0668' => 'pgr', 'PGSC0003DMG400007122' => 'stu', 'PGSC0003DMG400016478' => 'stu', 'PGSC0003DMG400025374' => 'stu', 'PGSC0003DMG400026536' => 'stu', 'Phvul.003G079600' => 'pvu', 'Phvul.005G115600' => 'pvu', 'Phvul.005G127100' => 'pvu', 'Phvul.006G149500' => 'pvu', 'Phvul.006G149600' => 'pvu', 'Phvul.011G071800' => 'pvu', 'Phvul.011G090400' => 'pvu', 'Potri.004G013400' => 'ptr', 'Potri.004G188100' => 'ptr', 'Potri.008G195500' => 'ptr', 'Potri.009G148800' => 'ptr', 'Potri.011G004700' => 'ptr', 'Pp3c17_22810' => 'ppa', 'Pp3c18_4480' => 'ppa', 'Pp3c19_13030' => 'ppa', 'Pp3c1_33620' => 'ppa', 'Pp3c2_9380' => 'ppa', 'PRCOL_00001023' => 'pco', 'Prupe.3G216300' => 'ppe', 'Prupe.4G019500' => 'ppe', 'Prupe.6G092500' => 'ppe', 'Prupe.6G119200' => 'ppe', 'Psat0s1945g0080' => 'psa', 'Psat0s4167g0040' => 'psa', 'Psat1g185800' => 'psa', 'Psat4g006440' => 'psa', 'Psat4g006480' => 'psa', 'Psat4g168120' => 'psa', 'Psat5g255680' => 'psa', 'Psat5g261760' => 'psa', 'Psat7g222120' => 'psa', 'PSO063G7252' => 'pso', 'PSO170G4778' => 'pso', 'PSO210G2249' => 'pso', 'PSO339G2411' => 'pso', 'PSO339G2457' => 'pso', 'PSO339G2854' => 'pso', 'PSO339G4288' => 'pso', 'PSO339G4615' => 'pso', 'PSO384G2796' => 'pso', 'PSO384G2940' => 'pso', 'PSO384G4227' => 'pso', 'PSO478G1425' => 'pso', 'PSO541G3863' => 'pso', 'PSO675G0507' => 'pso', 'PSO782G0338' => 'pso', 'PSO832G0644' => 'pso', 'QL01p013664' => 'qlo', 'QL01p036598' => 'qlo', 'QL05p072984' => 'qlo', 'QL08p005768' => 'qlo', 'QL08p032743' => 'qlo', 'QL93p0073_0439' => 'qlo', 'QL93p0073_0444' => 'qlo', 'RcHm_v2.0_Chr5g0002851' => 'rch', 'RcHm_v2.0_Chr5g0055201' => 'rch', 'RcHm_v2.0_Chr5g0061191' => 'rch', 'RcHm_v2.0_Chr7g0203231' => 'rch', 'Rhsim01G0208100' => 'rsi', 'Rhsim01G0208200' => 'rsi', 'Rhsim02G0106500' => 'rsi', 'Rhsim03G0107900' => 'rsi', 'Rhsim06G0163400' => 'rsi', 'Rhsim13G0105200' => 'rsi', 'Sabra04G0006300' => 'sbr', 'Sabra04G0127000' => 'sbr', 'Sabra08G0148700' => 'sbr', 'Sabra09G0117400' => 'sbr', 'SalBow1G3326' => 'sbo', 'SalBow3G3228' => 'sbo', 'SalBow6G1634' => 'sbo', 'SalBow6G3603' => 'sbo', 'SalBow6G5266' => 'sbo', 'SalBow7G2265' => 'sbo', 'SalBow8G0850' => 'sbo', 'SalBow8G2592' => 'sbo', 'Sc05g0009240' => 'sci', 'Sc12g0002300' => 'sci', 'Sc21g0000100' => 'sci', 'Sc21g0004720' => 'sci', 'Sed0002949' => 'sed', 'Sed0004114' => 'sed', 'Sed0004306' => 'sed', 'Sed0006172' => 'sed', 'Sed0008413' => 'sed', 'Sed0013809' => 'sed', 'Sed0019556' => 'sed', 'SEGI_03570' => 'sgi', 'SEGI_07859' => 'sgi', 'SEGI_15042' => 'sgi', 'SEGI_16263' => 'sgi', 'SEGI_16552' => 'sgi', 'SEGI_24331' => 'sgi', 'SEGI_27316' => 'sgi', 'SEGI_29521' => 'sgi', 'SEGI_41342' => 'sgi', 'SGA_v2.0_scaffold27G11617' => 'sas', 'SGA_v2.0_scaffold316G48428' => 'sas', 'SGA_v2.0_scaffold49G18261' => 'sas', 'SGA_v2.0_scaffold7G03831' => 'sas', 'SGA_v2.0_scaffold93G28359' => 'sas', 'SHI02210' => 'shi', 'SHI06028' => 'shi', 'SHI06321' => 'shi', 'SMO111G0012' => 'smo', 'SMO228G0080' => 'smo', 'SMO356G0756' => 'smo', 'Solyc02g080620.3' => 'sly', 'Solyc06g074530.1' => 'sly', 'Solyc11g066890.1' => 'sly', 'Solyc11g072520.3' => 'sly', 'Sopen02g025330' => 'spe', 'Sopen06g031000' => 'spe', 'Sopen09g008240' => 'spe', 'Sopen09g025210' => 'spe', 'Sopen11g026600' => 'spe', 'Sopen11g030170' => 'spe', 'Sp1g10420' => 'spa', 'Sp3g06570' => 'spa', 'Sp4g10660' => 'spa', 'Sp5g16460' => 'spa', 'Sp6g22710' => 'spa', 'TAR365G0112' => 'tar', 'TAR369G0717' => 'tar', 'TAR374G0976' => 'tar', 'TAR623G1128' => 'tar', 'TAR626G1937' => 'tar', 'TAR627G0123' => 'tar', 'TAR628G0305' => 'tar', 'TAR636G1176' => 'tar', 'TAR636G2442' => 'tar', 'THA.LOC104800556' => 'tha', 'THA.LOC104809501' => 'tha', 'THA.LOC104815126' => 'tha', 'THA.LOC104815732' => 'tha', 'THA.LOC104823528' => 'tha', 'Thecc.02G365600' => 'tca', 'Thecc.06G222300' => 'tca', 'Thecc.09G261800' => 'tca', 'Thecc.09G291400' => 'tca', 'Thhalv10003028m.g' => 'esa', 'Thhalv10007886m.g' => 'esa', 'Thhalv10016085m.g' => 'esa', 'Thhalv10016681m.g' => 'esa', 'Thhalv10020951m.g' => 'esa', 'TPR.G15598' => 'tpr', 'TPR.G29305' => 'tpr', 'TPR.G32395' => 'tpr', 'TPR.G36998' => 'tpr', 'TPR.G4227' => 'tpr', 'TWI18G1433' => 'twi', 'TWI31G0755' => 'twi', 'TWI38G0912' => 'twi', 'TWI75G1097' => 'twi', 'TWI75G1619' => 'twi', 'TWI79G1336' => 'twi', 'unitig_0.g943' => 'ugi', 'unitig_0.g944' => 'ugi', 'unitig_22.g6646' => 'ugi', 'unitig_37.g12681' => 'ugi', 'unitig_8.g3290' => 'ugi', 'vmacro03278' => 'vma', 'vmacro12197' => 'vma', 'vmacro14478' => 'vma', 'vmacro15787' => 'vma', 'vmacro15789' => 'vma', 'vmacro15790' => 'vma', 'vmacro15806' => 'vma', 'vmacro22907' => 'vma', 'vmacro22908' => 'vma', 'vmacro22909' => 'vma', 'vmacro23108' => 'vma', 'VMungo0540G0540' => 'vmu', 'VMungo0540G2468' => 'vmu', 'VMungo1080G0390' => 'vmu', 'VMungo1080G1165' => 'vmu', 'VMungo1127G0170' => 'vmu', 'VMungo1127G2099' => 'vmu', 'VMungo1215G3013' => 'vmu', 'Zm00001eb013110' => 'zma', 'Zm00001eb084260' => 'zma', 'Zm00001eb096110' => 'zma', 'Zm00001eb217510' => 'zma', 'Zm00001eb322550' => 'zma', 'Zm00001eb390770' => 'zma', 'Zm00001eb397170' => 'zma', 'Zm00001eb404610' => 'zma', 'Zm00001eb421790' => 'zma' ) $gf_id = 'HOM05D000911' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000911' ) $data_identifier = 'HOM05D000911' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 16, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 5, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 6, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 8, 'nnu' => (int) 16, 'oeu' => (int) 8, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 5, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 16, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421790' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000911', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27780' => 'bna', 'A03p35380' => 'bna', 'A04p21160' => 'bna', 'A05p40570' => 'bna', 'A06p26900' => 'bna', 'A08p33230' => 'bna', 'A09p65960' => 'bna', 'A10p18290' => 'bna', 'Aa31LG1G12990' => 'aar', 'Aa31LG1G2980' => 'aar', 'Aa31LG4G14320' => 'aar', 'Aa31LG7G11800' => 'aar', 'Aa31sc36G50' => 'aar', 'Aa31sc36G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3721' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5459' => 'aag', 'Actinidia03028' => 'ach', 'Actinidia03753' => 'ach', 'Actinidia04187' => 'ach', 'Actinidia05509' => 'ach', 'Actinidia24180' => 'ach', 'Actinidia26906' => 'ach', 'Actinidia37097' => 'ach', 'Actinidia38249' => 'ach', 'Ah.01g003470' => 'amhyb', 'Ah.01g004580' => 'amhyb', 'Ah.01g014850' => 'amhyb', 'Ah.01g016830' => 'amhyb', 'Ah.14g088000' => 'amhyb', 'AL1G22980' => 'aly', 'AL3G18990' => 'aly', 'AL4G22440' => 'aly', 'AL4G33180' => 'aly', 'AL5G22920' => 'aly', 'AL6G33660' => 'aly', 'AL8G20720' => 'aly', 'Aqoxy1G00935' => 'aox', 'Aqoxy1G02094' => 'aox', 'Aqoxy2G01239' => 'aox', 'Aqoxy4G01870' => 'aox', 'Aqoxy7G00450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.36ZVTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71EM27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5D6C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH3WRE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3NCM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RIM768' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YB5YRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z36GDV' => 'arhy', 'AT1G08250' => 'ath', 'AT1G11790' => 'ath', 'AT2G27820' => 'ath', 'AT3G07630' => 'ath', 'AT3G44720' => 'ath', 'AT5G22630' => 'ath', 'ATR0693G304' => 'atr', 'ATR0794G109' => 'atr', 'ATR0820G120' => 'atr', 'ATR1159G064' => 'atr', 'Atru.chr10.2239' => 'acertr', 'Atru.chr3.3371' => 'acertr', 'Atru.chr6.3202' => 'acertr', 'AUR62006499' => 'cqu', 'AUR62012718' => 'cqu', 'AUR62021938' => 'cqu', 'AUR62023932' => 'cqu', 'AUR62025034' => 'cqu', 'AUR62025035' => 'cqu', 'AUR62038307' => 'cqu', 'AUR62043466' => 'cqu', 'BcaB02g10748' => 'bca', 'BcaB03g13231' => 'bca', 'BcaB03g14689' => 'bca', 'BcaB05g22716' => 'bca', 'BcaB06g28172' => 'bca', 'BcaB08g36413' => 'bca', 'BcaC01g02186' => 'bca', 'BcaC01g04272' => 'bca', 'BcaC02g08080' => 'bca', 'BcaC02g08227' => 'bca', 'BcaC03g13901' => 'bca', 'BcaC04g19593' => 'bca', 'BcaC04g20874' => 'bca', 'BcaC05g29557' => 'bca', 'BcaC06g35505' => 'bca', 'BcaC07g41954' => 'bca', 'BcaC07g41955' => 'bca', 'BcaC07g41956' => 'bca', 'BcaC07g42519' => 'bca', 'BcaC07g42520' => 'bca', 'BcaC07g42523' => 'bca', 'BcaC07g42524' => 'bca', 'BcaC07g42525' => 'bca', 'BcaC08g47480' => 'bca', 'BcaC08g47481' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00530' => 'bna', 'BolC2t07178H' => 'bol', 'BolC3t16567H' => 'bol', 'BolC4t27234H' => 'bol', 'BolC5t29728H' => 'bol', 'BolC5t34622H' => 'bol', 'BolC6t40321H' => 'bol', 'BolC7t42028H' => 'bol', 'BolC8t49125H' => 'bol', 'BolC8t52538H' => 'bol', 'BolC8t52539H' => 'bol', 'BolC9t56681H' => 'bol', 'BolC9t58266H' => 'bol', 'BolSC21t60294H' => 'bol', 'BraA02t05670Z' => 'bra', 'BraA03t12716Z' => 'bra', 'BraA04t17685Z' => 'bra', 'BraA05t22788Z' => 'bra', 'BraA06t24032Z' => 'bra', 'BraA06t25625Z' => 'bra', 'BraA07t27930Z' => 'bra', 'BraA08t35242Z' => 'bra', 'BraA09t38609Z' => 'bra', 'BraA10t43905Z' => 'bra', 'C02p11060' => 'bna', 'C03p42990' => 'bna', 'C03p67310' => 'bna', 'C04p56990' => 'bna', 'C04p58660' => 'bna', 'C05p09890' => 'bna', 'C05p59680' => 'bna', 'C06p19830' => 'bna', 'C06p53040' => 'bna', 'C07p15230' => 'bna', 'C08p50070' => 'bna', 'C08p50090' => 'bna', 'C09p38330' => 'bna', 'C09p53940' => 'bna', 'CAN.G1014.1' => 'can', 'CAN.G644.30' => 'can', 'CAN.G84.47' => 'can', 'CAN.G919.8' => 'can', 'CANSAT54G0113' => 'cansat', 'CANSAT54G1286' => 'cansat', 'CANSAT64G1020' => 'cansat', 'CARHR008080' => 'chi', 'CARHR008090' => 'chi', 'CARHR012130' => 'chi', 'CARHR038390' => 'chi', 'CARHR082330' => 'chi', 'CARHR120520' => 'chi', 'CARHR151470' => 'chi', 'CARHR190950' => 'chi', 'Carub.0001s0760' => 'cru', 'Carub.0001s1146' => 'cru', 'Carub.0003s0721' => 'cru', 'Carub.0004s0858' => 'cru', 'Carub.0005s1040' => 'cru', 'Carub.0006s2035' => 'cru', 'Carub.0015s0005' => 'cru', 'Ca_01607_v3' => 'car', 'Ca_01677_v3' => 'car', 'Ca_06087_v3' => 'car', 'Ca_19238_v3' => 'car', 'Ca_19373_v3' => 'car', 'Ca_21079_v3' => 'car', 'CBR_g54016' => 'cbr', 'CBR_g54018' => 'cbr', 'CBR_g54020' => 'cbr', 'Cc01_g09780' => 'ccan', 'Cc01_g11680' => 'ccan', 'Cc02_g15610' => 'ccan', 'Cc05_g04350' => 'ccan', 'Cc09_g01580' => 'ccan', 'CDE01G0795' => 'cde', 'CDE02G2024' => 'cde', 'CDE02G2260' => 'cde', 'CDE02G4561' => 'cde', 'CDE05G2733' => 'cde', 'CDE05G3422' => 'cde', 'CDE06G2003' => 'cde', 'CDE08G0576' => 'cde', 'CDE09G0048' => 'cde', 'CDE11G0805' => 'cde', 'Cfa003644' => 'cfa', 'Cfa006290' => 'cfa', 'Cfa010080' => 'cfa', 'Cfa011376' => 'cfa', 'Cfa011576' => 'cfa', 'Cfa011577' => 'cfa', 'Cfa014389' => 'cfa', 'Ciclev10006044m.g' => 'ccl', 'Ciclev10006954m.g' => 'ccl', 'Ciclev10015131m.g' => 'ccl', 'Ciclev10015580m.g' => 'ccl', 'Ciclev10028359m.g' => 'ccl', 'Ciclev10028573m.g' => 'ccl', 'CiPaw.03G159300' => 'cil', 'CiPaw.04G115100' => 'cil', 'CiPaw.09G092800' => 'cil', 'CiPaw.10G071800' => 'cil', 'CiPaw.13G105800' => 'cil', 'CiPaw.13G141000' => 'cil', 'CiPaw.14G103400' => 'cil', 'ClCG01G012700' => 'cla', 'ClCG01G012720' => 'cla', 'ClCG01G021920' => 'cla', 'ClCG02G008870' => 'cla', 'ClCG02G020840' => 'cla', 'ClCG02G021930' => 'cla', 'COL.COLO4_19302' => 'col', 'COL.COLO4_25262' => 'col', 'COL.COLO4_31788' => 'col', 'Cpa.g.c34684' => 'cpa', 'Cpa.g.c36520.1' => 'cpa', 'Cpa.g.c45626' => 'cpa', 'Cpa.g.sc121.17' => 'cpa', 'Cpa.g.sc13.22' => 'cpa', 'Cpa.g.sc87.88' => 'cpa', 'Cre06.g261800' => 'cre', 'CsaV3_1G014500' => 'csa', 'CsaV3_1G014510' => 'csa', 'CsaV3_2G034880' => 'csa', 'CsaV3_6G014760' => 'csa', 'CsaV3_6G021500' => 'csa', 'CsaV3_6G048980' => 'csa', 'CSS0002511' => 'camsi', 'CSS0007556' => 'camsi', 'CSS0008532' => 'camsi', 'CSS0009709' => 'camsi', 'CSS0010486' => 'camsi', 'CSS0016768' => 'camsi', 'CSS0023512' => 'camsi', 'CSS0025341' => 'camsi', 'CSS0027999' => 'camsi', 'CSS0028944' => 'camsi', 'CSS0032292' => 'camsi', 'CSS0032464' => 'camsi', 'CSS0037153' => 'camsi', 'CSS0039256' => 'camsi', 'CSS0048392' => 'camsi', 'CSS0050458' => 'camsi', 'DCAR_004224' => 'dca', 'DCAR_006147' => 'dca', 'DCAR_006465' => 'dca', 'DCAR_008159' => 'dca', 'DCAR_012164' => 'dca', 'DCAR_019764' => 'dca', 'Dinv05418' => 'din', 'Dinv10839' => 'din', 'Dinv12521' => 'din', 'Dinv13900' => 'din', 'Dinv29426' => 'din', 'Duzib150G0263' => 'dzi', 'Duzib168G1178' => 'dzi', 'Duzib168G1924' => 'dzi', 'Duzib170G0299' => 'dzi', 'Duzib170G0813' => 'dzi', 'Duzib235G1128' => 'dzi', 'Duzib248G1060' => 'dzi', 'ECA232G1910' => 'eca', 'ECA233G4621' => 'eca', 'ECA238G1216' => 'eca', 'ECA238G1784' => 'eca', 'ECA248G1242' => 'eca', 'EL10Ac8g20071' => 'bvu', 'EL10Ac9g21086' => 'bvu', 'EL10Ac9g22407' => 'bvu', 'EL10Ac9g22412' => 'bvu', 'Eucgr.A01119' => 'egr', 'Eucgr.E04043' => 'egr', 'Eucgr.J00428' => 'egr', 'Eucgr.J00958' => 'egr', 'FAN11G3091' => 'fan', 'FAN11G3651' => 'fan', 'FAN16G2566' => 'fan', 'FAN21G3155' => 'fan', 'FAN21G3400' => 'fan', 'FAN21G3543' => 'fan', 'FAN25G0234' => 'fan', 'FAN25G1422' => 'fan', 'FAN25G3392' => 'fan', 'FvH4_3g01940' => 'fve', 'FvH4_3g29870' => 'fve', 'FvH4_3g33680' => 'fve', 'Glyma.09G004200' => 'gma', 'Glyma.11G151288' => 'gma', 'Glyma.11G189100' => 'gma', 'Glyma.12G072500' => 'gma', 'Glyma.12G085500' => 'gma', 'Glyma.12G181800' => 'gma', 'Glyma.12G193000' => 'gma', 'Glyma.13G309300' => 'gma', 'Glyma.13G319000' => 'gma', 'Glyma.17G012600' => 'gma', 'Gohir.A06G148600' => 'ghi', 'Gohir.A07G115800' => 'ghi', 'Gohir.A08G003600' => 'ghi', 'Gohir.A09G093300' => 'ghi', 'Gohir.A09G105400' => 'ghi', 'Gohir.A09G105500' => 'ghi', 'Gohir.D06G154600' => 'ghi', 'Gohir.D07G120200' => 'ghi', 'Gohir.D08G013900' => 'ghi', 'Gohir.D09G093100' => 'ghi', 'Gohir.D09G102200' => 'ghi', 'Gohir.D09G102300' => 'ghi', 'Gorai.001G129400' => 'gra', 'Gorai.004G008200' => 'gra', 'Gorai.006G109800' => 'gra', 'Gorai.006G119500' => 'gra', 'Gorai.006G121300' => 'gra', 'Gorai.010G180700' => 'gra', 'GSVIVG01012716001' => 'vvi', 'GSVIVG01025118001' => 'vvi', 'GSVIVG01030439001' => 'vvi', 'GSVIVG01031397001' => 'vvi', 'HanXRQChr01g0004201' => 'han', 'HanXRQChr02g0054941' => 'han', 'HanXRQChr05g0141811' => 'han', 'HanXRQChr07g0197751' => 'han', 'HanXRQChr11g0346691' => 'han', 'HanXRQChr13g0396971' => 'han', 'HanXRQChr14g0432951' => 'han', 'HanXRQChr14g0452001' => 'han', 'HanXRQChr15g0496681' => 'han', 'HanXRQChr17g0557491' => 'han', 'HanXRQChr17g0557501' => 'han', 'Haze_06809' => 'cav', 'Haze_12852' => 'cav', 'Haze_15850' => 'cav', 'Haze_23446' => 'cav', 'Haze_23942' => 'cav', 'Haze_23943' => 'cav', 'Hma1.2p1_0091F.1_g046450' => 'hma', 'Hma1.2p1_0128F.1_g059910' => 'hma', 'Hma1.2p1_0249F.1_g102260' => 'hma', 'Hma1.2p1_0453F.1_g156190' => 'hma', 'Hma1.2p1_0695F.1_g204380' => 'hma', 'Hma1.2p1_0749F.1_g212650' => 'hma', 'Hma1.2p1_2156F.1_g315420' => 'hma', 'Hma1.2p1_2686F.1_g326940' => 'hma', 'HPP92_006428' => 'vpl', 'HPP92_012069' => 'vpl', 'HPP92_014129' => 'vpl', 'HPP92_014133' => 'vpl', 'HPP92_017315' => 'vpl', 'HPP92_026445' => 'vpl', 'HPP92_026446' => 'vpl', 'Hund00774' => 'sun', 'Hund07682' => 'sun', 'Hund21413' => 'sun', 'Hund23462' => 'sun', 'Hund23463' => 'sun', 'Lalb_Chr03g0027911' => 'lal', 'Lalb_Chr13g0304271' => 'lal', 'Lalb_Chr19g0137471' => 'lal', 'Lalb_Chr22g0350651' => 'lal', 'Lalb_Chr24g0395151' => 'lal', 'Lj1A1231T40' => 'lonja', 'Lj1A221T48' => 'lonja', 'Lj1C924T12' => 'lonja', 'Lj2C993G6' => 'lonja', 'Lj3g0005790' => 'lja', 'Lj3g0015432' => 'lja', 'Lj3g0017722' => 'lja', 'Lj3g0018497' => 'lja', 'Lj4g0025071' => 'lja', 'Lsat_1_v5_gn_1_129680' => 'lsa', 'Lsat_1_v5_gn_2_25321' => 'lsa', 'Lsat_1_v5_gn_2_95461' => 'lsa', 'Lsat_1_v5_gn_4_159620' => 'lsa', 'Lsat_1_v5_gn_6_41301' => 'lsa', 'Lsat_1_v5_gn_6_74660' => 'lsa', 'Lsat_1_v5_gn_7_11520' => 'lsa', 'Lsat_1_v5_gn_9_67680' => 'lsa', 'Manes.04G008300' => 'mes', 'Manes.04G008400' => 'mes', 'Manes.04G026500' => 'mes', 'Manes.10G135300' => 'mes', 'Manes.11G157300' => 'mes', 'Manes.12G074000' => 'mes', 'Manes.16G006200' => 'mes', 'Manes.17G026400' => 'mes', 'Mapoly0024s0086' => 'mpo', 'Mapoly0024s0087' => 'mpo', 'Mapoly0071s0057' => 'mpo', 'Mapoly0204s0012' => 'mpo', 'MBI04_g37681_MAGBIO' => 'mbi', 'MBI05_g17779_MAGBIO' => 'mbi', 'MBI12_g31184_MAGBIO' => 'mbi', 'MBI17_g11083_MAGBIO' => 'mbi', 'MBI18_g03883_MAGBIO' => 'mbi', 'MBI18_g28940_MAGBIO' => 'mbi', 'MCO01G690' => 'mco', 'MD03G1109900' => 'mdo', 'MD03G1134800' => 'mdo', 'MD05G1348000' => 'mdo', 'MD10G1322400' => 'mdo', 'MD11G1123300' => 'mdo', 'MD11G1157600' => 'mdo', 'Medtr2g084875' => 'mtr', 'Medtr2g088130' => 'mtr', 'Medtr4g055310' => 'mtr', 'Medtr4g061070' => 'mtr', 'Medtr4g132250' => 'mtr', 'MELO3C004795.2' => 'cme', 'MELO3C004797.2' => 'cme', 'MELO3C007396.2' => 'cme', 'MELO3C019277.2' => 'cme', 'MELO3C021449.2' => 'cme', 'MELO3C025736.2' => 'cme', 'Migut.D02175' => 'egut', 'Migut.H01573' => 'egut', 'Migut.M01327' => 'egut', 'Migut.N02513' => 'egut', 'MSTRG.14638' => 'ama', 'MSTRG.18632' => 'ama', 'MSTRG.7203' => 'ama', 'Nitab4.5_0000533g0140' => 'nta', 'Nitab4.5_0000888g0150' => 'nta', 'Nitab4.5_0001453g0040' => 'nta', 'Nitab4.5_0002827g0090' => 'nta', 'Nitab4.5_0003082g0040' => 'nta', 'Nitab4.5_0007799g0040' => 'nta', 'Nitab4.5_0008983g0010' => 'nta', 'Nitab4.5_0009017g0020' => 'nta', 'Nn1g02132' => 'nnu', 'Nn1g03492' => 'nnu', 'Nn1g03493' => 'nnu', 'Nn1g03494' => 'nnu', 'Nn1g07164' => 'nnu', 'Nn1g07291' => 'nnu', 'Nn2g10655' => 'nnu', 'Nn2g11652' => 'nnu', 'Nn2g14008' => 'nnu', 'Nn3g17476' => 'nnu', 'Nn3g17477' => 'nnu', 'Nn4g22370' => 'nnu', 'Nn4g25255' => 'nnu', 'Nn5g27755' => 'nnu', 'Nn6g34260' => 'nnu', 'Nn6g35041' => 'nnu', 'Oeu005924.1' => 'oeu', 'Oeu008383.1' => 'oeu', 'Oeu014928.1' => 'oeu', 'Oeu019889.1' => 'oeu', 'Oeu022271.1' => 'oeu', 'Oeu025271.1' => 'oeu', 'Oeu036302.1' => 'oeu', 'Oeu044100.1' => 'oeu', 'Os01g0528300' => 'osa', 'Os03g0286200' => 'osa', 'Os04g0406600' => 'osa', 'Os07g0512000' => 'osa', 'Os07g0694600' => 'osa', 'Os08g0411000' => 'osa', 'Os09g0565700' => 'osa', 'Os09g0566050' => 'osa', 'Os10g0523700' => 'osa', 'Peaxi162Scf00002g00514' => 'pax', 'Peaxi162Scf00047g01817' => 'pax', 'Peaxi162Scf00114g00001' => 'pax', 'Peaxi162Scf00147g00613' => 'pax', 'Peaxi162Scf00389g00425' => 'pax', 'PGR042G1139' => 'pgr', 'PGR042G3273' => 'pgr', 'PGR102G2180' => 'pgr', 'PGR119G0234' => 'pgr', 'PGR119G0668' => 'pgr', 'PGSC0003DMG400007122' => 'stu', 'PGSC0003DMG400016478' => 'stu', 'PGSC0003DMG400025374' => 'stu', 'PGSC0003DMG400026536' => 'stu', 'Phvul.003G079600' => 'pvu', 'Phvul.005G115600' => 'pvu', 'Phvul.005G127100' => 'pvu', 'Phvul.006G149500' => 'pvu', 'Phvul.006G149600' => 'pvu', 'Phvul.011G071800' => 'pvu', 'Phvul.011G090400' => 'pvu', 'Potri.004G013400' => 'ptr', 'Potri.004G188100' => 'ptr', 'Potri.008G195500' => 'ptr', 'Potri.009G148800' => 'ptr', 'Potri.011G004700' => 'ptr', 'Pp3c17_22810' => 'ppa', 'Pp3c18_4480' => 'ppa', 'Pp3c19_13030' => 'ppa', 'Pp3c1_33620' => 'ppa', 'Pp3c2_9380' => 'ppa', 'PRCOL_00001023' => 'pco', 'Prupe.3G216300' => 'ppe', 'Prupe.4G019500' => 'ppe', 'Prupe.6G092500' => 'ppe', 'Prupe.6G119200' => 'ppe', 'Psat0s1945g0080' => 'psa', 'Psat0s4167g0040' => 'psa', 'Psat1g185800' => 'psa', 'Psat4g006440' => 'psa', 'Psat4g006480' => 'psa', 'Psat4g168120' => 'psa', 'Psat5g255680' => 'psa', 'Psat5g261760' => 'psa', 'Psat7g222120' => 'psa', 'PSO063G7252' => 'pso', 'PSO170G4778' => 'pso', 'PSO210G2249' => 'pso', 'PSO339G2411' => 'pso', 'PSO339G2457' => 'pso', 'PSO339G2854' => 'pso', 'PSO339G4288' => 'pso', 'PSO339G4615' => 'pso', 'PSO384G2796' => 'pso', 'PSO384G2940' => 'pso', 'PSO384G4227' => 'pso', 'PSO478G1425' => 'pso', 'PSO541G3863' => 'pso', 'PSO675G0507' => 'pso', 'PSO782G0338' => 'pso', 'PSO832G0644' => 'pso', 'QL01p013664' => 'qlo', 'QL01p036598' => 'qlo', 'QL05p072984' => 'qlo', 'QL08p005768' => 'qlo', 'QL08p032743' => 'qlo', 'QL93p0073_0439' => 'qlo', 'QL93p0073_0444' => 'qlo', 'RcHm_v2.0_Chr5g0002851' => 'rch', 'RcHm_v2.0_Chr5g0055201' => 'rch', 'RcHm_v2.0_Chr5g0061191' => 'rch', 'RcHm_v2.0_Chr7g0203231' => 'rch', 'Rhsim01G0208100' => 'rsi', 'Rhsim01G0208200' => 'rsi', 'Rhsim02G0106500' => 'rsi', 'Rhsim03G0107900' => 'rsi', 'Rhsim06G0163400' => 'rsi', 'Rhsim13G0105200' => 'rsi', 'Sabra04G0006300' => 'sbr', 'Sabra04G0127000' => 'sbr', 'Sabra08G0148700' => 'sbr', 'Sabra09G0117400' => 'sbr', 'SalBow1G3326' => 'sbo', 'SalBow3G3228' => 'sbo', 'SalBow6G1634' => 'sbo', 'SalBow6G3603' => 'sbo', 'SalBow6G5266' => 'sbo', 'SalBow7G2265' => 'sbo', 'SalBow8G0850' => 'sbo', 'SalBow8G2592' => 'sbo', 'Sc05g0009240' => 'sci', 'Sc12g0002300' => 'sci', 'Sc21g0000100' => 'sci', 'Sc21g0004720' => 'sci', 'Sed0002949' => 'sed', 'Sed0004114' => 'sed', 'Sed0004306' => 'sed', 'Sed0006172' => 'sed', 'Sed0008413' => 'sed', 'Sed0013809' => 'sed', 'Sed0019556' => 'sed', 'SEGI_03570' => 'sgi', 'SEGI_07859' => 'sgi', 'SEGI_15042' => 'sgi', 'SEGI_16263' => 'sgi', 'SEGI_16552' => 'sgi', 'SEGI_24331' => 'sgi', 'SEGI_27316' => 'sgi', 'SEGI_29521' => 'sgi', 'SEGI_41342' => 'sgi', 'SGA_v2.0_scaffold27G11617' => 'sas', 'SGA_v2.0_scaffold316G48428' => 'sas', 'SGA_v2.0_scaffold49G18261' => 'sas', 'SGA_v2.0_scaffold7G03831' => 'sas', 'SGA_v2.0_scaffold93G28359' => 'sas', 'SHI02210' => 'shi', 'SHI06028' => 'shi', 'SHI06321' => 'shi', 'SMO111G0012' => 'smo', 'SMO228G0080' => 'smo', 'SMO356G0756' => 'smo', 'Solyc02g080620.3' => 'sly', 'Solyc06g074530.1' => 'sly', 'Solyc11g066890.1' => 'sly', 'Solyc11g072520.3' => 'sly', 'Sopen02g025330' => 'spe', 'Sopen06g031000' => 'spe', 'Sopen09g008240' => 'spe', 'Sopen09g025210' => 'spe', 'Sopen11g026600' => 'spe', 'Sopen11g030170' => 'spe', 'Sp1g10420' => 'spa', 'Sp3g06570' => 'spa', 'Sp4g10660' => 'spa', 'Sp5g16460' => 'spa', 'Sp6g22710' => 'spa', 'TAR365G0112' => 'tar', 'TAR369G0717' => 'tar', 'TAR374G0976' => 'tar', 'TAR623G1128' => 'tar', 'TAR626G1937' => 'tar', 'TAR627G0123' => 'tar', 'TAR628G0305' => 'tar', 'TAR636G1176' => 'tar', 'TAR636G2442' => 'tar', 'THA.LOC104800556' => 'tha', 'THA.LOC104809501' => 'tha', 'THA.LOC104815126' => 'tha', 'THA.LOC104815732' => 'tha', 'THA.LOC104823528' => 'tha', 'Thecc.02G365600' => 'tca', 'Thecc.06G222300' => 'tca', 'Thecc.09G261800' => 'tca', 'Thecc.09G291400' => 'tca', 'Thhalv10003028m.g' => 'esa', 'Thhalv10007886m.g' => 'esa', 'Thhalv10016085m.g' => 'esa', 'Thhalv10016681m.g' => 'esa', 'Thhalv10020951m.g' => 'esa', 'TPR.G15598' => 'tpr', 'TPR.G29305' => 'tpr', 'TPR.G32395' => 'tpr', 'TPR.G36998' => 'tpr', 'TPR.G4227' => 'tpr', 'TWI18G1433' => 'twi', 'TWI31G0755' => 'twi', 'TWI38G0912' => 'twi', 'TWI75G1097' => 'twi', 'TWI75G1619' => 'twi', 'TWI79G1336' => 'twi', 'unitig_0.g943' => 'ugi', 'unitig_0.g944' => 'ugi', 'unitig_22.g6646' => 'ugi', 'unitig_37.g12681' => 'ugi', 'unitig_8.g3290' => 'ugi', 'vmacro03278' => 'vma', 'vmacro12197' => 'vma', 'vmacro14478' => 'vma', 'vmacro15787' => 'vma', 'vmacro15789' => 'vma', 'vmacro15790' => 'vma', 'vmacro15806' => 'vma', 'vmacro22907' => 'vma', 'vmacro22908' => 'vma', 'vmacro22909' => 'vma', 'vmacro23108' => 'vma', 'VMungo0540G0540' => 'vmu', 'VMungo0540G2468' => 'vmu', 'VMungo1080G0390' => 'vmu', 'VMungo1080G1165' => 'vmu', 'VMungo1127G0170' => 'vmu', 'VMungo1127G2099' => 'vmu', 'VMungo1215G3013' => 'vmu', 'Zm00001eb013110' => 'zma', 'Zm00001eb084260' => 'zma', 'Zm00001eb096110' => 'zma', 'Zm00001eb217510' => 'zma', 'Zm00001eb322550' => 'zma', 'Zm00001eb390770' => 'zma', 'Zm00001eb397170' => 'zma', 'Zm00001eb404610' => 'zma', 'Zm00001eb421790' => 'zma' ), 'gf_id' => 'HOM05D000911', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000911' ), 'data_identifier' => 'HOM05D000911', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000911', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27780' => 'bna', 'A03p35380' => 'bna', 'A04p21160' => 'bna', 'A05p40570' => 'bna', 'A06p26900' => 'bna', 'A08p33230' => 'bna', 'A09p65960' => 'bna', 'A10p18290' => 'bna', 'Aa31LG1G12990' => 'aar', 'Aa31LG1G2980' => 'aar', 'Aa31LG4G14320' => 'aar', 'Aa31LG7G11800' => 'aar', 'Aa31sc36G50' => 'aar', 'Aa31sc36G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3721' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5459' => 'aag', 'Actinidia03028' => 'ach', 'Actinidia03753' => 'ach', 'Actinidia04187' => 'ach', 'Actinidia05509' => 'ach', 'Actinidia24180' => 'ach', 'Actinidia26906' => 'ach', 'Actinidia37097' => 'ach', 'Actinidia38249' => 'ach', 'Ah.01g003470' => 'amhyb', 'Ah.01g004580' => 'amhyb', 'Ah.01g014850' => 'amhyb', 'Ah.01g016830' => 'amhyb', 'Ah.14g088000' => 'amhyb', 'AL1G22980' => 'aly', 'AL3G18990' => 'aly', 'AL4G22440' => 'aly', 'AL4G33180' => 'aly', 'AL5G22920' => 'aly', 'AL6G33660' => 'aly', 'AL8G20720' => 'aly', 'Aqoxy1G00935' => 'aox', 'Aqoxy1G02094' => 'aox', 'Aqoxy2G01239' => 'aox', 'Aqoxy4G01870' => 'aox', 'Aqoxy7G00450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.36ZVTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71EM27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5D6C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH3WRE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3NCM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RIM768' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YB5YRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z36GDV' => 'arhy', 'AT1G08250' => 'ath', 'AT1G11790' => 'ath', 'AT2G27820' => 'ath', 'AT3G07630' => 'ath', 'AT3G44720' => 'ath', 'AT5G22630' => 'ath', 'ATR0693G304' => 'atr', 'ATR0794G109' => 'atr', 'ATR0820G120' => 'atr', 'ATR1159G064' => 'atr', 'Atru.chr10.2239' => 'acertr', 'Atru.chr3.3371' => 'acertr', 'Atru.chr6.3202' => 'acertr', 'AUR62006499' => 'cqu', 'AUR62012718' => 'cqu', 'AUR62021938' => 'cqu', 'AUR62023932' => 'cqu', 'AUR62025034' => 'cqu', 'AUR62025035' => 'cqu', 'AUR62038307' => 'cqu', 'AUR62043466' => 'cqu', 'BcaB02g10748' => 'bca', 'BcaB03g13231' => 'bca', 'BcaB03g14689' => 'bca', 'BcaB05g22716' => 'bca', 'BcaB06g28172' => 'bca', 'BcaB08g36413' => 'bca', 'BcaC01g02186' => 'bca', 'BcaC01g04272' => 'bca', 'BcaC02g08080' => 'bca', 'BcaC02g08227' => 'bca', 'BcaC03g13901' => 'bca', 'BcaC04g19593' => 'bca', 'BcaC04g20874' => 'bca', 'BcaC05g29557' => 'bca', 'BcaC06g35505' => 'bca', 'BcaC07g41954' => 'bca', 'BcaC07g41955' => 'bca', 'BcaC07g41956' => 'bca', 'BcaC07g42519' => 'bca', 'BcaC07g42520' => 'bca', 'BcaC07g42523' => 'bca', 'BcaC07g42524' => 'bca', 'BcaC07g42525' => 'bca', 'BcaC08g47480' => 'bca', 'BcaC08g47481' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00530' => 'bna', 'BolC2t07178H' => 'bol', 'BolC3t16567H' => 'bol', 'BolC4t27234H' => 'bol', 'BolC5t29728H' => 'bol', 'BolC5t34622H' => 'bol', 'BolC6t40321H' => 'bol', 'BolC7t42028H' => 'bol', 'BolC8t49125H' => 'bol', 'BolC8t52538H' => 'bol', 'BolC8t52539H' => 'bol', 'BolC9t56681H' => 'bol', 'BolC9t58266H' => 'bol', 'BolSC21t60294H' => 'bol', 'BraA02t05670Z' => 'bra', 'BraA03t12716Z' => 'bra', 'BraA04t17685Z' => 'bra', 'BraA05t22788Z' => 'bra', 'BraA06t24032Z' => 'bra', 'BraA06t25625Z' => 'bra', 'BraA07t27930Z' => 'bra', 'BraA08t35242Z' => 'bra', 'BraA09t38609Z' => 'bra', 'BraA10t43905Z' => 'bra', 'C02p11060' => 'bna', 'C03p42990' => 'bna', 'C03p67310' => 'bna', 'C04p56990' => 'bna', 'C04p58660' => 'bna', 'C05p09890' => 'bna', 'C05p59680' => 'bna', 'C06p19830' => 'bna', 'C06p53040' => 'bna', 'C07p15230' => 'bna', 'C08p50070' => 'bna', 'C08p50090' => 'bna', 'C09p38330' => 'bna', 'C09p53940' => 'bna', 'CAN.G1014.1' => 'can', 'CAN.G644.30' => 'can', 'CAN.G84.47' => 'can', 'CAN.G919.8' => 'can', 'CANSAT54G0113' => 'cansat', 'CANSAT54G1286' => 'cansat', 'CANSAT64G1020' => 'cansat', 'CARHR008080' => 'chi', 'CARHR008090' => 'chi', 'CARHR012130' => 'chi', 'CARHR038390' => 'chi', 'CARHR082330' => 'chi', 'CARHR120520' => 'chi', 'CARHR151470' => 'chi', 'CARHR190950' => 'chi', 'Carub.0001s0760' => 'cru', 'Carub.0001s1146' => 'cru', 'Carub.0003s0721' => 'cru', 'Carub.0004s0858' => 'cru', 'Carub.0005s1040' => 'cru', 'Carub.0006s2035' => 'cru', 'Carub.0015s0005' => 'cru', 'Ca_01607_v3' => 'car', 'Ca_01677_v3' => 'car', 'Ca_06087_v3' => 'car', 'Ca_19238_v3' => 'car', 'Ca_19373_v3' => 'car', 'Ca_21079_v3' => 'car', 'CBR_g54016' => 'cbr', 'CBR_g54018' => 'cbr', 'CBR_g54020' => 'cbr', 'Cc01_g09780' => 'ccan', 'Cc01_g11680' => 'ccan', 'Cc02_g15610' => 'ccan', 'Cc05_g04350' => 'ccan', 'Cc09_g01580' => 'ccan', 'CDE01G0795' => 'cde', 'CDE02G2024' => 'cde', 'CDE02G2260' => 'cde', 'CDE02G4561' => 'cde', 'CDE05G2733' => 'cde', 'CDE05G3422' => 'cde', 'CDE06G2003' => 'cde', 'CDE08G0576' => 'cde', 'CDE09G0048' => 'cde', 'CDE11G0805' => 'cde', 'Cfa003644' => 'cfa', 'Cfa006290' => 'cfa', 'Cfa010080' => 'cfa', 'Cfa011376' => 'cfa', 'Cfa011576' => 'cfa', 'Cfa011577' => 'cfa', 'Cfa014389' => 'cfa', 'Ciclev10006044m.g' => 'ccl', 'Ciclev10006954m.g' => 'ccl', 'Ciclev10015131m.g' => 'ccl', 'Ciclev10015580m.g' => 'ccl', 'Ciclev10028359m.g' => 'ccl', 'Ciclev10028573m.g' => 'ccl', 'CiPaw.03G159300' => 'cil', 'CiPaw.04G115100' => 'cil', 'CiPaw.09G092800' => 'cil', 'CiPaw.10G071800' => 'cil', 'CiPaw.13G105800' => 'cil', 'CiPaw.13G141000' => 'cil', 'CiPaw.14G103400' => 'cil', 'ClCG01G012700' => 'cla', 'ClCG01G012720' => 'cla', 'ClCG01G021920' => 'cla', 'ClCG02G008870' => 'cla', 'ClCG02G020840' => 'cla', 'ClCG02G021930' => 'cla', 'COL.COLO4_19302' => 'col', 'COL.COLO4_25262' => 'col', 'COL.COLO4_31788' => 'col', 'Cpa.g.c34684' => 'cpa', 'Cpa.g.c36520.1' => 'cpa', 'Cpa.g.c45626' => 'cpa', 'Cpa.g.sc121.17' => 'cpa', 'Cpa.g.sc13.22' => 'cpa', 'Cpa.g.sc87.88' => 'cpa', 'Cre06.g261800' => 'cre', 'CsaV3_1G014500' => 'csa', 'CsaV3_1G014510' => 'csa', 'CsaV3_2G034880' => 'csa', 'CsaV3_6G014760' => 'csa', 'CsaV3_6G021500' => 'csa', 'CsaV3_6G048980' => 'csa', 'CSS0002511' => 'camsi', 'CSS0007556' => 'camsi', 'CSS0008532' => 'camsi', 'CSS0009709' => 'camsi', 'CSS0010486' => 'camsi', 'CSS0016768' => 'camsi', 'CSS0023512' => 'camsi', 'CSS0025341' => 'camsi', 'CSS0027999' => 'camsi', 'CSS0028944' => 'camsi', 'CSS0032292' => 'camsi', 'CSS0032464' => 'camsi', 'CSS0037153' => 'camsi', 'CSS0039256' => 'camsi', 'CSS0048392' => 'camsi', 'CSS0050458' => 'camsi', 'DCAR_004224' => 'dca', 'DCAR_006147' => 'dca', 'DCAR_006465' => 'dca', 'DCAR_008159' => 'dca', 'DCAR_012164' => 'dca', 'DCAR_019764' => 'dca', 'Dinv05418' => 'din', 'Dinv10839' => 'din', 'Dinv12521' => 'din', 'Dinv13900' => 'din', 'Dinv29426' => 'din', 'Duzib150G0263' => 'dzi', 'Duzib168G1178' => 'dzi', 'Duzib168G1924' => 'dzi', 'Duzib170G0299' => 'dzi', 'Duzib170G0813' => 'dzi', 'Duzib235G1128' => 'dzi', 'Duzib248G1060' => 'dzi', 'ECA232G1910' => 'eca', 'ECA233G4621' => 'eca', 'ECA238G1216' => 'eca', 'ECA238G1784' => 'eca', 'ECA248G1242' => 'eca', 'EL10Ac8g20071' => 'bvu', 'EL10Ac9g21086' => 'bvu', 'EL10Ac9g22407' => 'bvu', 'EL10Ac9g22412' => 'bvu', 'Eucgr.A01119' => 'egr', 'Eucgr.E04043' => 'egr', 'Eucgr.J00428' => 'egr', 'Eucgr.J00958' => 'egr', 'FAN11G3091' => 'fan', 'FAN11G3651' => 'fan', 'FAN16G2566' => 'fan', 'FAN21G3155' => 'fan', 'FAN21G3400' => 'fan', 'FAN21G3543' => 'fan', 'FAN25G0234' => 'fan', 'FAN25G1422' => 'fan', 'FAN25G3392' => 'fan', 'FvH4_3g01940' => 'fve', 'FvH4_3g29870' => 'fve', 'FvH4_3g33680' => 'fve', 'Glyma.09G004200' => 'gma', 'Glyma.11G151288' => 'gma', 'Glyma.11G189100' => 'gma', 'Glyma.12G072500' => 'gma', 'Glyma.12G085500' => 'gma', 'Glyma.12G181800' => 'gma', 'Glyma.12G193000' => 'gma', 'Glyma.13G309300' => 'gma', 'Glyma.13G319000' => 'gma', 'Glyma.17G012600' => 'gma', 'Gohir.A06G148600' => 'ghi', 'Gohir.A07G115800' => 'ghi', 'Gohir.A08G003600' => 'ghi', 'Gohir.A09G093300' => 'ghi', 'Gohir.A09G105400' => 'ghi', 'Gohir.A09G105500' => 'ghi', 'Gohir.D06G154600' => 'ghi', 'Gohir.D07G120200' => 'ghi', 'Gohir.D08G013900' => 'ghi', 'Gohir.D09G093100' => 'ghi', 'Gohir.D09G102200' => 'ghi', 'Gohir.D09G102300' => 'ghi', 'Gorai.001G129400' => 'gra', 'Gorai.004G008200' => 'gra', 'Gorai.006G109800' => 'gra', 'Gorai.006G119500' => 'gra', 'Gorai.006G121300' => 'gra', 'Gorai.010G180700' => 'gra', 'GSVIVG01012716001' => 'vvi', 'GSVIVG01025118001' => 'vvi', 'GSVIVG01030439001' => 'vvi', 'GSVIVG01031397001' => 'vvi', 'HanXRQChr01g0004201' => 'han', 'HanXRQChr02g0054941' => 'han', 'HanXRQChr05g0141811' => 'han', 'HanXRQChr07g0197751' => 'han', 'HanXRQChr11g0346691' => 'han', 'HanXRQChr13g0396971' => 'han', 'HanXRQChr14g0432951' => 'han', 'HanXRQChr14g0452001' => 'han', 'HanXRQChr15g0496681' => 'han', 'HanXRQChr17g0557491' => 'han', 'HanXRQChr17g0557501' => 'han', 'Haze_06809' => 'cav', 'Haze_12852' => 'cav', 'Haze_15850' => 'cav', 'Haze_23446' => 'cav', 'Haze_23942' => 'cav', 'Haze_23943' => 'cav', 'Hma1.2p1_0091F.1_g046450' => 'hma', 'Hma1.2p1_0128F.1_g059910' => 'hma', 'Hma1.2p1_0249F.1_g102260' => 'hma', 'Hma1.2p1_0453F.1_g156190' => 'hma', 'Hma1.2p1_0695F.1_g204380' => 'hma', 'Hma1.2p1_0749F.1_g212650' => 'hma', 'Hma1.2p1_2156F.1_g315420' => 'hma', 'Hma1.2p1_2686F.1_g326940' => 'hma', 'HPP92_006428' => 'vpl', 'HPP92_012069' => 'vpl', 'HPP92_014129' => 'vpl', 'HPP92_014133' => 'vpl', 'HPP92_017315' => 'vpl', 'HPP92_026445' => 'vpl', 'HPP92_026446' => 'vpl', 'Hund00774' => 'sun', 'Hund07682' => 'sun', 'Hund21413' => 'sun', 'Hund23462' => 'sun', 'Hund23463' => 'sun', 'Lalb_Chr03g0027911' => 'lal', 'Lalb_Chr13g0304271' => 'lal', 'Lalb_Chr19g0137471' => 'lal', 'Lalb_Chr22g0350651' => 'lal', 'Lalb_Chr24g0395151' => 'lal', 'Lj1A1231T40' => 'lonja', 'Lj1A221T48' => 'lonja', 'Lj1C924T12' => 'lonja', 'Lj2C993G6' => 'lonja', 'Lj3g0005790' => 'lja', 'Lj3g0015432' => 'lja', 'Lj3g0017722' => 'lja', 'Lj3g0018497' => 'lja', 'Lj4g0025071' => 'lja', 'Lsat_1_v5_gn_1_129680' => 'lsa', 'Lsat_1_v5_gn_2_25321' => 'lsa', 'Lsat_1_v5_gn_2_95461' => 'lsa', 'Lsat_1_v5_gn_4_159620' => 'lsa', 'Lsat_1_v5_gn_6_41301' => 'lsa', 'Lsat_1_v5_gn_6_74660' => 'lsa', 'Lsat_1_v5_gn_7_11520' => 'lsa', 'Lsat_1_v5_gn_9_67680' => 'lsa', 'Manes.04G008300' => 'mes', 'Manes.04G008400' => 'mes', 'Manes.04G026500' => 'mes', 'Manes.10G135300' => 'mes', 'Manes.11G157300' => 'mes', 'Manes.12G074000' => 'mes', 'Manes.16G006200' => 'mes', 'Manes.17G026400' => 'mes', 'Mapoly0024s0086' => 'mpo', 'Mapoly0024s0087' => 'mpo', 'Mapoly0071s0057' => 'mpo', 'Mapoly0204s0012' => 'mpo', 'MBI04_g37681_MAGBIO' => 'mbi', 'MBI05_g17779_MAGBIO' => 'mbi', 'MBI12_g31184_MAGBIO' => 'mbi', 'MBI17_g11083_MAGBIO' => 'mbi', 'MBI18_g03883_MAGBIO' => 'mbi', 'MBI18_g28940_MAGBIO' => 'mbi', 'MCO01G690' => 'mco', 'MD03G1109900' => 'mdo', 'MD03G1134800' => 'mdo', 'MD05G1348000' => 'mdo', 'MD10G1322400' => 'mdo', 'MD11G1123300' => 'mdo', 'MD11G1157600' => 'mdo', 'Medtr2g084875' => 'mtr', 'Medtr2g088130' => 'mtr', 'Medtr4g055310' => 'mtr', 'Medtr4g061070' => 'mtr', 'Medtr4g132250' => 'mtr', 'MELO3C004795.2' => 'cme', 'MELO3C004797.2' => 'cme', 'MELO3C007396.2' => 'cme', 'MELO3C019277.2' => 'cme', 'MELO3C021449.2' => 'cme', 'MELO3C025736.2' => 'cme', 'Migut.D02175' => 'egut', 'Migut.H01573' => 'egut', 'Migut.M01327' => 'egut', 'Migut.N02513' => 'egut', 'MSTRG.14638' => 'ama', 'MSTRG.18632' => 'ama', 'MSTRG.7203' => 'ama', 'Nitab4.5_0000533g0140' => 'nta', 'Nitab4.5_0000888g0150' => 'nta', 'Nitab4.5_0001453g0040' => 'nta', 'Nitab4.5_0002827g0090' => 'nta', 'Nitab4.5_0003082g0040' => 'nta', 'Nitab4.5_0007799g0040' => 'nta', 'Nitab4.5_0008983g0010' => 'nta', 'Nitab4.5_0009017g0020' => 'nta', 'Nn1g02132' => 'nnu', 'Nn1g03492' => 'nnu', 'Nn1g03493' => 'nnu', 'Nn1g03494' => 'nnu', 'Nn1g07164' => 'nnu', 'Nn1g07291' => 'nnu', 'Nn2g10655' => 'nnu', 'Nn2g11652' => 'nnu', 'Nn2g14008' => 'nnu', 'Nn3g17476' => 'nnu', 'Nn3g17477' => 'nnu', 'Nn4g22370' => 'nnu', 'Nn4g25255' => 'nnu', 'Nn5g27755' => 'nnu', 'Nn6g34260' => 'nnu', 'Nn6g35041' => 'nnu', 'Oeu005924.1' => 'oeu', 'Oeu008383.1' => 'oeu', 'Oeu014928.1' => 'oeu', 'Oeu019889.1' => 'oeu', 'Oeu022271.1' => 'oeu', 'Oeu025271.1' => 'oeu', 'Oeu036302.1' => 'oeu', 'Oeu044100.1' => 'oeu', 'Os01g0528300' => 'osa', 'Os03g0286200' => 'osa', 'Os04g0406600' => 'osa', 'Os07g0512000' => 'osa', 'Os07g0694600' => 'osa', 'Os08g0411000' => 'osa', 'Os09g0565700' => 'osa', 'Os09g0566050' => 'osa', 'Os10g0523700' => 'osa', 'Peaxi162Scf00002g00514' => 'pax', 'Peaxi162Scf00047g01817' => 'pax', 'Peaxi162Scf00114g00001' => 'pax', 'Peaxi162Scf00147g00613' => 'pax', 'Peaxi162Scf00389g00425' => 'pax', 'PGR042G1139' => 'pgr', 'PGR042G3273' => 'pgr', 'PGR102G2180' => 'pgr', 'PGR119G0234' => 'pgr', 'PGR119G0668' => 'pgr', 'PGSC0003DMG400007122' => 'stu', 'PGSC0003DMG400016478' => 'stu', 'PGSC0003DMG400025374' => 'stu', 'PGSC0003DMG400026536' => 'stu', 'Phvul.003G079600' => 'pvu', 'Phvul.005G115600' => 'pvu', 'Phvul.005G127100' => 'pvu', 'Phvul.006G149500' => 'pvu', 'Phvul.006G149600' => 'pvu', 'Phvul.011G071800' => 'pvu', 'Phvul.011G090400' => 'pvu', 'Potri.004G013400' => 'ptr', 'Potri.004G188100' => 'ptr', 'Potri.008G195500' => 'ptr', 'Potri.009G148800' => 'ptr', 'Potri.011G004700' => 'ptr', 'Pp3c17_22810' => 'ppa', 'Pp3c18_4480' => 'ppa', 'Pp3c19_13030' => 'ppa', 'Pp3c1_33620' => 'ppa', 'Pp3c2_9380' => 'ppa', 'PRCOL_00001023' => 'pco', 'Prupe.3G216300' => 'ppe', 'Prupe.4G019500' => 'ppe', 'Prupe.6G092500' => 'ppe', 'Prupe.6G119200' => 'ppe', 'Psat0s1945g0080' => 'psa', 'Psat0s4167g0040' => 'psa', 'Psat1g185800' => 'psa', 'Psat4g006440' => 'psa', 'Psat4g006480' => 'psa', 'Psat4g168120' => 'psa', 'Psat5g255680' => 'psa', 'Psat5g261760' => 'psa', 'Psat7g222120' => 'psa', 'PSO063G7252' => 'pso', 'PSO170G4778' => 'pso', 'PSO210G2249' => 'pso', 'PSO339G2411' => 'pso', 'PSO339G2457' => 'pso', 'PSO339G2854' => 'pso', 'PSO339G4288' => 'pso', 'PSO339G4615' => 'pso', 'PSO384G2796' => 'pso', 'PSO384G2940' => 'pso', 'PSO384G4227' => 'pso', 'PSO478G1425' => 'pso', 'PSO541G3863' => 'pso', 'PSO675G0507' => 'pso', 'PSO782G0338' => 'pso', 'PSO832G0644' => 'pso', 'QL01p013664' => 'qlo', 'QL01p036598' => 'qlo', 'QL05p072984' => 'qlo', 'QL08p005768' => 'qlo', 'QL08p032743' => 'qlo', 'QL93p0073_0439' => 'qlo', 'QL93p0073_0444' => 'qlo', 'RcHm_v2.0_Chr5g0002851' => 'rch', 'RcHm_v2.0_Chr5g0055201' => 'rch', 'RcHm_v2.0_Chr5g0061191' => 'rch', 'RcHm_v2.0_Chr7g0203231' => 'rch', 'Rhsim01G0208100' => 'rsi', 'Rhsim01G0208200' => 'rsi', 'Rhsim02G0106500' => 'rsi', 'Rhsim03G0107900' => 'rsi', 'Rhsim06G0163400' => 'rsi', 'Rhsim13G0105200' => 'rsi', 'Sabra04G0006300' => 'sbr', 'Sabra04G0127000' => 'sbr', 'Sabra08G0148700' => 'sbr', 'Sabra09G0117400' => 'sbr', 'SalBow1G3326' => 'sbo', 'SalBow3G3228' => 'sbo', 'SalBow6G1634' => 'sbo', 'SalBow6G3603' => 'sbo', 'SalBow6G5266' => 'sbo', 'SalBow7G2265' => 'sbo', 'SalBow8G0850' => 'sbo', 'SalBow8G2592' => 'sbo', 'Sc05g0009240' => 'sci', 'Sc12g0002300' => 'sci', 'Sc21g0000100' => 'sci', 'Sc21g0004720' => 'sci', 'Sed0002949' => 'sed', 'Sed0004114' => 'sed', 'Sed0004306' => 'sed', 'Sed0006172' => 'sed', 'Sed0008413' => 'sed', 'Sed0013809' => 'sed', 'Sed0019556' => 'sed', 'SEGI_03570' => 'sgi', 'SEGI_07859' => 'sgi', 'SEGI_15042' => 'sgi', 'SEGI_16263' => 'sgi', 'SEGI_16552' => 'sgi', 'SEGI_24331' => 'sgi', 'SEGI_27316' => 'sgi', 'SEGI_29521' => 'sgi', 'SEGI_41342' => 'sgi', 'SGA_v2.0_scaffold27G11617' => 'sas', 'SGA_v2.0_scaffold316G48428' => 'sas', 'SGA_v2.0_scaffold49G18261' => 'sas', 'SGA_v2.0_scaffold7G03831' => 'sas', 'SGA_v2.0_scaffold93G28359' => 'sas', 'SHI02210' => 'shi', 'SHI06028' => 'shi', 'SHI06321' => 'shi', 'SMO111G0012' => 'smo', 'SMO228G0080' => 'smo', 'SMO356G0756' => 'smo', 'Solyc02g080620.3' => 'sly', 'Solyc06g074530.1' => 'sly', 'Solyc11g066890.1' => 'sly', 'Solyc11g072520.3' => 'sly', 'Sopen02g025330' => 'spe', 'Sopen06g031000' => 'spe', 'Sopen09g008240' => 'spe', 'Sopen09g025210' => 'spe', 'Sopen11g026600' => 'spe', 'Sopen11g030170' => 'spe', 'Sp1g10420' => 'spa', 'Sp3g06570' => 'spa', 'Sp4g10660' => 'spa', 'Sp5g16460' => 'spa', 'Sp6g22710' => 'spa', 'TAR365G0112' => 'tar', 'TAR369G0717' => 'tar', 'TAR374G0976' => 'tar', 'TAR623G1128' => 'tar', 'TAR626G1937' => 'tar', 'TAR627G0123' => 'tar', 'TAR628G0305' => 'tar', 'TAR636G1176' => 'tar', 'TAR636G2442' => 'tar', 'THA.LOC104800556' => 'tha', 'THA.LOC104809501' => 'tha', 'THA.LOC104815126' => 'tha', 'THA.LOC104815732' => 'tha', 'THA.LOC104823528' => 'tha', 'Thecc.02G365600' => 'tca', 'Thecc.06G222300' => 'tca', 'Thecc.09G261800' => 'tca', 'Thecc.09G291400' => 'tca', 'Thhalv10003028m.g' => 'esa', 'Thhalv10007886m.g' => 'esa', 'Thhalv10016085m.g' => 'esa', 'Thhalv10016681m.g' => 'esa', 'Thhalv10020951m.g' => 'esa', 'TPR.G15598' => 'tpr', 'TPR.G29305' => 'tpr', 'TPR.G32395' => 'tpr', 'TPR.G36998' => 'tpr', 'TPR.G4227' => 'tpr', 'TWI18G1433' => 'twi', 'TWI31G0755' => 'twi', 'TWI38G0912' => 'twi', 'TWI75G1097' => 'twi', 'TWI75G1619' => 'twi', 'TWI79G1336' => 'twi', 'unitig_0.g943' => 'ugi', 'unitig_0.g944' => 'ugi', 'unitig_22.g6646' => 'ugi', 'unitig_37.g12681' => 'ugi', 'unitig_8.g3290' => 'ugi', 'vmacro03278' => 'vma', 'vmacro12197' => 'vma', 'vmacro14478' => 'vma', 'vmacro15787' => 'vma', 'vmacro15789' => 'vma', 'vmacro15790' => 'vma', 'vmacro15806' => 'vma', 'vmacro22907' => 'vma', 'vmacro22908' => 'vma', 'vmacro22909' => 'vma', 'vmacro23108' => 'vma', 'VMungo0540G0540' => 'vmu', 'VMungo0540G2468' => 'vmu', 'VMungo1080G0390' => 'vmu', 'VMungo1080G1165' => 'vmu', 'VMungo1127G0170' => 'vmu', 'VMungo1127G2099' => 'vmu', 'VMungo1215G3013' => 'vmu', 'Zm00001eb013110' => 'zma', 'Zm00001eb084260' => 'zma', 'Zm00001eb096110' => 'zma', 'Zm00001eb217510' => 'zma', 'Zm00001eb322550' => 'zma', 'Zm00001eb390770' => 'zma', 'Zm00001eb397170' => 'zma', 'Zm00001eb404610' => 'zma', 'Zm00001eb421790' => 'zma' ) $gf_id = 'HOM05D000911' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000911' ) $data_identifier = 'HOM05D000911' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 16, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 5, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 6, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 8, 'nnu' => (int) 16, 'oeu' => (int) 8, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 5, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 16, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421790' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000911', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27780' => 'bna', 'A03p35380' => 'bna', 'A04p21160' => 'bna', 'A05p40570' => 'bna', 'A06p26900' => 'bna', 'A08p33230' => 'bna', 'A09p65960' => 'bna', 'A10p18290' => 'bna', 'Aa31LG1G12990' => 'aar', 'Aa31LG1G2980' => 'aar', 'Aa31LG4G14320' => 'aar', 'Aa31LG7G11800' => 'aar', 'Aa31sc36G50' => 'aar', 'Aa31sc36G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3721' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5459' => 'aag', 'Actinidia03028' => 'ach', 'Actinidia03753' => 'ach', 'Actinidia04187' => 'ach', 'Actinidia05509' => 'ach', 'Actinidia24180' => 'ach', 'Actinidia26906' => 'ach', 'Actinidia37097' => 'ach', 'Actinidia38249' => 'ach', 'Ah.01g003470' => 'amhyb', 'Ah.01g004580' => 'amhyb', 'Ah.01g014850' => 'amhyb', 'Ah.01g016830' => 'amhyb', 'Ah.14g088000' => 'amhyb', 'AL1G22980' => 'aly', 'AL3G18990' => 'aly', 'AL4G22440' => 'aly', 'AL4G33180' => 'aly', 'AL5G22920' => 'aly', 'AL6G33660' => 'aly', 'AL8G20720' => 'aly', 'Aqoxy1G00935' => 'aox', 'Aqoxy1G02094' => 'aox', 'Aqoxy2G01239' => 'aox', 'Aqoxy4G01870' => 'aox', 'Aqoxy7G00450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.36ZVTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71EM27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5D6C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH3WRE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3NCM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RIM768' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YB5YRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z36GDV' => 'arhy', 'AT1G08250' => 'ath', 'AT1G11790' => 'ath', 'AT2G27820' => 'ath', 'AT3G07630' => 'ath', 'AT3G44720' => 'ath', 'AT5G22630' => 'ath', 'ATR0693G304' => 'atr', 'ATR0794G109' => 'atr', 'ATR0820G120' => 'atr', 'ATR1159G064' => 'atr', 'Atru.chr10.2239' => 'acertr', 'Atru.chr3.3371' => 'acertr', 'Atru.chr6.3202' => 'acertr', 'AUR62006499' => 'cqu', 'AUR62012718' => 'cqu', 'AUR62021938' => 'cqu', 'AUR62023932' => 'cqu', 'AUR62025034' => 'cqu', 'AUR62025035' => 'cqu', 'AUR62038307' => 'cqu', 'AUR62043466' => 'cqu', 'BcaB02g10748' => 'bca', 'BcaB03g13231' => 'bca', 'BcaB03g14689' => 'bca', 'BcaB05g22716' => 'bca', 'BcaB06g28172' => 'bca', 'BcaB08g36413' => 'bca', 'BcaC01g02186' => 'bca', 'BcaC01g04272' => 'bca', 'BcaC02g08080' => 'bca', 'BcaC02g08227' => 'bca', 'BcaC03g13901' => 'bca', 'BcaC04g19593' => 'bca', 'BcaC04g20874' => 'bca', 'BcaC05g29557' => 'bca', 'BcaC06g35505' => 'bca', 'BcaC07g41954' => 'bca', 'BcaC07g41955' => 'bca', 'BcaC07g41956' => 'bca', 'BcaC07g42519' => 'bca', 'BcaC07g42520' => 'bca', 'BcaC07g42523' => 'bca', 'BcaC07g42524' => 'bca', 'BcaC07g42525' => 'bca', 'BcaC08g47480' => 'bca', 'BcaC08g47481' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00530' => 'bna', 'BolC2t07178H' => 'bol', 'BolC3t16567H' => 'bol', 'BolC4t27234H' => 'bol', 'BolC5t29728H' => 'bol', 'BolC5t34622H' => 'bol', 'BolC6t40321H' => 'bol', 'BolC7t42028H' => 'bol', 'BolC8t49125H' => 'bol', 'BolC8t52538H' => 'bol', 'BolC8t52539H' => 'bol', 'BolC9t56681H' => 'bol', 'BolC9t58266H' => 'bol', 'BolSC21t60294H' => 'bol', 'BraA02t05670Z' => 'bra', 'BraA03t12716Z' => 'bra', 'BraA04t17685Z' => 'bra', 'BraA05t22788Z' => 'bra', 'BraA06t24032Z' => 'bra', 'BraA06t25625Z' => 'bra', 'BraA07t27930Z' => 'bra', 'BraA08t35242Z' => 'bra', 'BraA09t38609Z' => 'bra', 'BraA10t43905Z' => 'bra', 'C02p11060' => 'bna', 'C03p42990' => 'bna', 'C03p67310' => 'bna', 'C04p56990' => 'bna', 'C04p58660' => 'bna', 'C05p09890' => 'bna', 'C05p59680' => 'bna', 'C06p19830' => 'bna', 'C06p53040' => 'bna', 'C07p15230' => 'bna', 'C08p50070' => 'bna', 'C08p50090' => 'bna', 'C09p38330' => 'bna', 'C09p53940' => 'bna', 'CAN.G1014.1' => 'can', 'CAN.G644.30' => 'can', 'CAN.G84.47' => 'can', 'CAN.G919.8' => 'can', 'CANSAT54G0113' => 'cansat', 'CANSAT54G1286' => 'cansat', 'CANSAT64G1020' => 'cansat', 'CARHR008080' => 'chi', 'CARHR008090' => 'chi', 'CARHR012130' => 'chi', 'CARHR038390' => 'chi', 'CARHR082330' => 'chi', 'CARHR120520' => 'chi', 'CARHR151470' => 'chi', 'CARHR190950' => 'chi', 'Carub.0001s0760' => 'cru', 'Carub.0001s1146' => 'cru', 'Carub.0003s0721' => 'cru', 'Carub.0004s0858' => 'cru', 'Carub.0005s1040' => 'cru', 'Carub.0006s2035' => 'cru', 'Carub.0015s0005' => 'cru', 'Ca_01607_v3' => 'car', 'Ca_01677_v3' => 'car', 'Ca_06087_v3' => 'car', 'Ca_19238_v3' => 'car', 'Ca_19373_v3' => 'car', 'Ca_21079_v3' => 'car', 'CBR_g54016' => 'cbr', 'CBR_g54018' => 'cbr', 'CBR_g54020' => 'cbr', 'Cc01_g09780' => 'ccan', 'Cc01_g11680' => 'ccan', 'Cc02_g15610' => 'ccan', 'Cc05_g04350' => 'ccan', 'Cc09_g01580' => 'ccan', 'CDE01G0795' => 'cde', 'CDE02G2024' => 'cde', 'CDE02G2260' => 'cde', 'CDE02G4561' => 'cde', 'CDE05G2733' => 'cde', 'CDE05G3422' => 'cde', 'CDE06G2003' => 'cde', 'CDE08G0576' => 'cde', 'CDE09G0048' => 'cde', 'CDE11G0805' => 'cde', 'Cfa003644' => 'cfa', 'Cfa006290' => 'cfa', 'Cfa010080' => 'cfa', 'Cfa011376' => 'cfa', 'Cfa011576' => 'cfa', 'Cfa011577' => 'cfa', 'Cfa014389' => 'cfa', 'Ciclev10006044m.g' => 'ccl', 'Ciclev10006954m.g' => 'ccl', 'Ciclev10015131m.g' => 'ccl', 'Ciclev10015580m.g' => 'ccl', 'Ciclev10028359m.g' => 'ccl', 'Ciclev10028573m.g' => 'ccl', 'CiPaw.03G159300' => 'cil', 'CiPaw.04G115100' => 'cil', 'CiPaw.09G092800' => 'cil', 'CiPaw.10G071800' => 'cil', 'CiPaw.13G105800' => 'cil', 'CiPaw.13G141000' => 'cil', 'CiPaw.14G103400' => 'cil', 'ClCG01G012700' => 'cla', 'ClCG01G012720' => 'cla', 'ClCG01G021920' => 'cla', 'ClCG02G008870' => 'cla', 'ClCG02G020840' => 'cla', 'ClCG02G021930' => 'cla', 'COL.COLO4_19302' => 'col', 'COL.COLO4_25262' => 'col', 'COL.COLO4_31788' => 'col', 'Cpa.g.c34684' => 'cpa', 'Cpa.g.c36520.1' => 'cpa', 'Cpa.g.c45626' => 'cpa', 'Cpa.g.sc121.17' => 'cpa', 'Cpa.g.sc13.22' => 'cpa', 'Cpa.g.sc87.88' => 'cpa', 'Cre06.g261800' => 'cre', 'CsaV3_1G014500' => 'csa', 'CsaV3_1G014510' => 'csa', 'CsaV3_2G034880' => 'csa', 'CsaV3_6G014760' => 'csa', 'CsaV3_6G021500' => 'csa', 'CsaV3_6G048980' => 'csa', 'CSS0002511' => 'camsi', 'CSS0007556' => 'camsi', 'CSS0008532' => 'camsi', 'CSS0009709' => 'camsi', 'CSS0010486' => 'camsi', 'CSS0016768' => 'camsi', 'CSS0023512' => 'camsi', 'CSS0025341' => 'camsi', 'CSS0027999' => 'camsi', 'CSS0028944' => 'camsi', 'CSS0032292' => 'camsi', 'CSS0032464' => 'camsi', 'CSS0037153' => 'camsi', 'CSS0039256' => 'camsi', 'CSS0048392' => 'camsi', 'CSS0050458' => 'camsi', 'DCAR_004224' => 'dca', 'DCAR_006147' => 'dca', 'DCAR_006465' => 'dca', 'DCAR_008159' => 'dca', 'DCAR_012164' => 'dca', 'DCAR_019764' => 'dca', 'Dinv05418' => 'din', 'Dinv10839' => 'din', 'Dinv12521' => 'din', 'Dinv13900' => 'din', 'Dinv29426' => 'din', 'Duzib150G0263' => 'dzi', 'Duzib168G1178' => 'dzi', 'Duzib168G1924' => 'dzi', 'Duzib170G0299' => 'dzi', 'Duzib170G0813' => 'dzi', 'Duzib235G1128' => 'dzi', 'Duzib248G1060' => 'dzi', 'ECA232G1910' => 'eca', 'ECA233G4621' => 'eca', 'ECA238G1216' => 'eca', 'ECA238G1784' => 'eca', 'ECA248G1242' => 'eca', 'EL10Ac8g20071' => 'bvu', 'EL10Ac9g21086' => 'bvu', 'EL10Ac9g22407' => 'bvu', 'EL10Ac9g22412' => 'bvu', 'Eucgr.A01119' => 'egr', 'Eucgr.E04043' => 'egr', 'Eucgr.J00428' => 'egr', 'Eucgr.J00958' => 'egr', 'FAN11G3091' => 'fan', 'FAN11G3651' => 'fan', 'FAN16G2566' => 'fan', 'FAN21G3155' => 'fan', 'FAN21G3400' => 'fan', 'FAN21G3543' => 'fan', 'FAN25G0234' => 'fan', 'FAN25G1422' => 'fan', 'FAN25G3392' => 'fan', 'FvH4_3g01940' => 'fve', 'FvH4_3g29870' => 'fve', 'FvH4_3g33680' => 'fve', 'Glyma.09G004200' => 'gma', 'Glyma.11G151288' => 'gma', 'Glyma.11G189100' => 'gma', 'Glyma.12G072500' => 'gma', 'Glyma.12G085500' => 'gma', 'Glyma.12G181800' => 'gma', 'Glyma.12G193000' => 'gma', 'Glyma.13G309300' => 'gma', 'Glyma.13G319000' => 'gma', 'Glyma.17G012600' => 'gma', 'Gohir.A06G148600' => 'ghi', 'Gohir.A07G115800' => 'ghi', 'Gohir.A08G003600' => 'ghi', 'Gohir.A09G093300' => 'ghi', 'Gohir.A09G105400' => 'ghi', 'Gohir.A09G105500' => 'ghi', 'Gohir.D06G154600' => 'ghi', 'Gohir.D07G120200' => 'ghi', 'Gohir.D08G013900' => 'ghi', 'Gohir.D09G093100' => 'ghi', 'Gohir.D09G102200' => 'ghi', 'Gohir.D09G102300' => 'ghi', 'Gorai.001G129400' => 'gra', 'Gorai.004G008200' => 'gra', 'Gorai.006G109800' => 'gra', 'Gorai.006G119500' => 'gra', 'Gorai.006G121300' => 'gra', 'Gorai.010G180700' => 'gra', 'GSVIVG01012716001' => 'vvi', 'GSVIVG01025118001' => 'vvi', 'GSVIVG01030439001' => 'vvi', 'GSVIVG01031397001' => 'vvi', 'HanXRQChr01g0004201' => 'han', 'HanXRQChr02g0054941' => 'han', 'HanXRQChr05g0141811' => 'han', 'HanXRQChr07g0197751' => 'han', 'HanXRQChr11g0346691' => 'han', 'HanXRQChr13g0396971' => 'han', 'HanXRQChr14g0432951' => 'han', 'HanXRQChr14g0452001' => 'han', 'HanXRQChr15g0496681' => 'han', 'HanXRQChr17g0557491' => 'han', 'HanXRQChr17g0557501' => 'han', 'Haze_06809' => 'cav', 'Haze_12852' => 'cav', 'Haze_15850' => 'cav', 'Haze_23446' => 'cav', 'Haze_23942' => 'cav', 'Haze_23943' => 'cav', 'Hma1.2p1_0091F.1_g046450' => 'hma', 'Hma1.2p1_0128F.1_g059910' => 'hma', 'Hma1.2p1_0249F.1_g102260' => 'hma', 'Hma1.2p1_0453F.1_g156190' => 'hma', 'Hma1.2p1_0695F.1_g204380' => 'hma', 'Hma1.2p1_0749F.1_g212650' => 'hma', 'Hma1.2p1_2156F.1_g315420' => 'hma', 'Hma1.2p1_2686F.1_g326940' => 'hma', 'HPP92_006428' => 'vpl', 'HPP92_012069' => 'vpl', 'HPP92_014129' => 'vpl', 'HPP92_014133' => 'vpl', 'HPP92_017315' => 'vpl', 'HPP92_026445' => 'vpl', 'HPP92_026446' => 'vpl', 'Hund00774' => 'sun', 'Hund07682' => 'sun', 'Hund21413' => 'sun', 'Hund23462' => 'sun', 'Hund23463' => 'sun', 'Lalb_Chr03g0027911' => 'lal', 'Lalb_Chr13g0304271' => 'lal', 'Lalb_Chr19g0137471' => 'lal', 'Lalb_Chr22g0350651' => 'lal', 'Lalb_Chr24g0395151' => 'lal', 'Lj1A1231T40' => 'lonja', 'Lj1A221T48' => 'lonja', 'Lj1C924T12' => 'lonja', 'Lj2C993G6' => 'lonja', 'Lj3g0005790' => 'lja', 'Lj3g0015432' => 'lja', 'Lj3g0017722' => 'lja', 'Lj3g0018497' => 'lja', 'Lj4g0025071' => 'lja', 'Lsat_1_v5_gn_1_129680' => 'lsa', 'Lsat_1_v5_gn_2_25321' => 'lsa', 'Lsat_1_v5_gn_2_95461' => 'lsa', 'Lsat_1_v5_gn_4_159620' => 'lsa', 'Lsat_1_v5_gn_6_41301' => 'lsa', 'Lsat_1_v5_gn_6_74660' => 'lsa', 'Lsat_1_v5_gn_7_11520' => 'lsa', 'Lsat_1_v5_gn_9_67680' => 'lsa', 'Manes.04G008300' => 'mes', 'Manes.04G008400' => 'mes', 'Manes.04G026500' => 'mes', 'Manes.10G135300' => 'mes', 'Manes.11G157300' => 'mes', 'Manes.12G074000' => 'mes', 'Manes.16G006200' => 'mes', 'Manes.17G026400' => 'mes', 'Mapoly0024s0086' => 'mpo', 'Mapoly0024s0087' => 'mpo', 'Mapoly0071s0057' => 'mpo', 'Mapoly0204s0012' => 'mpo', 'MBI04_g37681_MAGBIO' => 'mbi', 'MBI05_g17779_MAGBIO' => 'mbi', 'MBI12_g31184_MAGBIO' => 'mbi', 'MBI17_g11083_MAGBIO' => 'mbi', 'MBI18_g03883_MAGBIO' => 'mbi', 'MBI18_g28940_MAGBIO' => 'mbi', 'MCO01G690' => 'mco', 'MD03G1109900' => 'mdo', 'MD03G1134800' => 'mdo', 'MD05G1348000' => 'mdo', 'MD10G1322400' => 'mdo', 'MD11G1123300' => 'mdo', 'MD11G1157600' => 'mdo', 'Medtr2g084875' => 'mtr', 'Medtr2g088130' => 'mtr', 'Medtr4g055310' => 'mtr', 'Medtr4g061070' => 'mtr', 'Medtr4g132250' => 'mtr', 'MELO3C004795.2' => 'cme', 'MELO3C004797.2' => 'cme', 'MELO3C007396.2' => 'cme', 'MELO3C019277.2' => 'cme', 'MELO3C021449.2' => 'cme', 'MELO3C025736.2' => 'cme', 'Migut.D02175' => 'egut', 'Migut.H01573' => 'egut', 'Migut.M01327' => 'egut', 'Migut.N02513' => 'egut', 'MSTRG.14638' => 'ama', 'MSTRG.18632' => 'ama', 'MSTRG.7203' => 'ama', 'Nitab4.5_0000533g0140' => 'nta', 'Nitab4.5_0000888g0150' => 'nta', 'Nitab4.5_0001453g0040' => 'nta', 'Nitab4.5_0002827g0090' => 'nta', 'Nitab4.5_0003082g0040' => 'nta', 'Nitab4.5_0007799g0040' => 'nta', 'Nitab4.5_0008983g0010' => 'nta', 'Nitab4.5_0009017g0020' => 'nta', 'Nn1g02132' => 'nnu', 'Nn1g03492' => 'nnu', 'Nn1g03493' => 'nnu', 'Nn1g03494' => 'nnu', 'Nn1g07164' => 'nnu', 'Nn1g07291' => 'nnu', 'Nn2g10655' => 'nnu', 'Nn2g11652' => 'nnu', 'Nn2g14008' => 'nnu', 'Nn3g17476' => 'nnu', 'Nn3g17477' => 'nnu', 'Nn4g22370' => 'nnu', 'Nn4g25255' => 'nnu', 'Nn5g27755' => 'nnu', 'Nn6g34260' => 'nnu', 'Nn6g35041' => 'nnu', 'Oeu005924.1' => 'oeu', 'Oeu008383.1' => 'oeu', 'Oeu014928.1' => 'oeu', 'Oeu019889.1' => 'oeu', 'Oeu022271.1' => 'oeu', 'Oeu025271.1' => 'oeu', 'Oeu036302.1' => 'oeu', 'Oeu044100.1' => 'oeu', 'Os01g0528300' => 'osa', 'Os03g0286200' => 'osa', 'Os04g0406600' => 'osa', 'Os07g0512000' => 'osa', 'Os07g0694600' => 'osa', 'Os08g0411000' => 'osa', 'Os09g0565700' => 'osa', 'Os09g0566050' => 'osa', 'Os10g0523700' => 'osa', 'Peaxi162Scf00002g00514' => 'pax', 'Peaxi162Scf00047g01817' => 'pax', 'Peaxi162Scf00114g00001' => 'pax', 'Peaxi162Scf00147g00613' => 'pax', 'Peaxi162Scf00389g00425' => 'pax', 'PGR042G1139' => 'pgr', 'PGR042G3273' => 'pgr', 'PGR102G2180' => 'pgr', 'PGR119G0234' => 'pgr', 'PGR119G0668' => 'pgr', 'PGSC0003DMG400007122' => 'stu', 'PGSC0003DMG400016478' => 'stu', 'PGSC0003DMG400025374' => 'stu', 'PGSC0003DMG400026536' => 'stu', 'Phvul.003G079600' => 'pvu', 'Phvul.005G115600' => 'pvu', 'Phvul.005G127100' => 'pvu', 'Phvul.006G149500' => 'pvu', 'Phvul.006G149600' => 'pvu', 'Phvul.011G071800' => 'pvu', 'Phvul.011G090400' => 'pvu', 'Potri.004G013400' => 'ptr', 'Potri.004G188100' => 'ptr', 'Potri.008G195500' => 'ptr', 'Potri.009G148800' => 'ptr', 'Potri.011G004700' => 'ptr', 'Pp3c17_22810' => 'ppa', 'Pp3c18_4480' => 'ppa', 'Pp3c19_13030' => 'ppa', 'Pp3c1_33620' => 'ppa', 'Pp3c2_9380' => 'ppa', 'PRCOL_00001023' => 'pco', 'Prupe.3G216300' => 'ppe', 'Prupe.4G019500' => 'ppe', 'Prupe.6G092500' => 'ppe', 'Prupe.6G119200' => 'ppe', 'Psat0s1945g0080' => 'psa', 'Psat0s4167g0040' => 'psa', 'Psat1g185800' => 'psa', 'Psat4g006440' => 'psa', 'Psat4g006480' => 'psa', 'Psat4g168120' => 'psa', 'Psat5g255680' => 'psa', 'Psat5g261760' => 'psa', 'Psat7g222120' => 'psa', 'PSO063G7252' => 'pso', 'PSO170G4778' => 'pso', 'PSO210G2249' => 'pso', 'PSO339G2411' => 'pso', 'PSO339G2457' => 'pso', 'PSO339G2854' => 'pso', 'PSO339G4288' => 'pso', 'PSO339G4615' => 'pso', 'PSO384G2796' => 'pso', 'PSO384G2940' => 'pso', 'PSO384G4227' => 'pso', 'PSO478G1425' => 'pso', 'PSO541G3863' => 'pso', 'PSO675G0507' => 'pso', 'PSO782G0338' => 'pso', 'PSO832G0644' => 'pso', 'QL01p013664' => 'qlo', 'QL01p036598' => 'qlo', 'QL05p072984' => 'qlo', 'QL08p005768' => 'qlo', 'QL08p032743' => 'qlo', 'QL93p0073_0439' => 'qlo', 'QL93p0073_0444' => 'qlo', 'RcHm_v2.0_Chr5g0002851' => 'rch', 'RcHm_v2.0_Chr5g0055201' => 'rch', 'RcHm_v2.0_Chr5g0061191' => 'rch', 'RcHm_v2.0_Chr7g0203231' => 'rch', 'Rhsim01G0208100' => 'rsi', 'Rhsim01G0208200' => 'rsi', 'Rhsim02G0106500' => 'rsi', 'Rhsim03G0107900' => 'rsi', 'Rhsim06G0163400' => 'rsi', 'Rhsim13G0105200' => 'rsi', 'Sabra04G0006300' => 'sbr', 'Sabra04G0127000' => 'sbr', 'Sabra08G0148700' => 'sbr', 'Sabra09G0117400' => 'sbr', 'SalBow1G3326' => 'sbo', 'SalBow3G3228' => 'sbo', 'SalBow6G1634' => 'sbo', 'SalBow6G3603' => 'sbo', 'SalBow6G5266' => 'sbo', 'SalBow7G2265' => 'sbo', 'SalBow8G0850' => 'sbo', 'SalBow8G2592' => 'sbo', 'Sc05g0009240' => 'sci', 'Sc12g0002300' => 'sci', 'Sc21g0000100' => 'sci', 'Sc21g0004720' => 'sci', 'Sed0002949' => 'sed', 'Sed0004114' => 'sed', 'Sed0004306' => 'sed', 'Sed0006172' => 'sed', 'Sed0008413' => 'sed', 'Sed0013809' => 'sed', 'Sed0019556' => 'sed', 'SEGI_03570' => 'sgi', 'SEGI_07859' => 'sgi', 'SEGI_15042' => 'sgi', 'SEGI_16263' => 'sgi', 'SEGI_16552' => 'sgi', 'SEGI_24331' => 'sgi', 'SEGI_27316' => 'sgi', 'SEGI_29521' => 'sgi', 'SEGI_41342' => 'sgi', 'SGA_v2.0_scaffold27G11617' => 'sas', 'SGA_v2.0_scaffold316G48428' => 'sas', 'SGA_v2.0_scaffold49G18261' => 'sas', 'SGA_v2.0_scaffold7G03831' => 'sas', 'SGA_v2.0_scaffold93G28359' => 'sas', 'SHI02210' => 'shi', 'SHI06028' => 'shi', 'SHI06321' => 'shi', 'SMO111G0012' => 'smo', 'SMO228G0080' => 'smo', 'SMO356G0756' => 'smo', 'Solyc02g080620.3' => 'sly', 'Solyc06g074530.1' => 'sly', 'Solyc11g066890.1' => 'sly', 'Solyc11g072520.3' => 'sly', 'Sopen02g025330' => 'spe', 'Sopen06g031000' => 'spe', 'Sopen09g008240' => 'spe', 'Sopen09g025210' => 'spe', 'Sopen11g026600' => 'spe', 'Sopen11g030170' => 'spe', 'Sp1g10420' => 'spa', 'Sp3g06570' => 'spa', 'Sp4g10660' => 'spa', 'Sp5g16460' => 'spa', 'Sp6g22710' => 'spa', 'TAR365G0112' => 'tar', 'TAR369G0717' => 'tar', 'TAR374G0976' => 'tar', 'TAR623G1128' => 'tar', 'TAR626G1937' => 'tar', 'TAR627G0123' => 'tar', 'TAR628G0305' => 'tar', 'TAR636G1176' => 'tar', 'TAR636G2442' => 'tar', 'THA.LOC104800556' => 'tha', 'THA.LOC104809501' => 'tha', 'THA.LOC104815126' => 'tha', 'THA.LOC104815732' => 'tha', 'THA.LOC104823528' => 'tha', 'Thecc.02G365600' => 'tca', 'Thecc.06G222300' => 'tca', 'Thecc.09G261800' => 'tca', 'Thecc.09G291400' => 'tca', 'Thhalv10003028m.g' => 'esa', 'Thhalv10007886m.g' => 'esa', 'Thhalv10016085m.g' => 'esa', 'Thhalv10016681m.g' => 'esa', 'Thhalv10020951m.g' => 'esa', 'TPR.G15598' => 'tpr', 'TPR.G29305' => 'tpr', 'TPR.G32395' => 'tpr', 'TPR.G36998' => 'tpr', 'TPR.G4227' => 'tpr', 'TWI18G1433' => 'twi', 'TWI31G0755' => 'twi', 'TWI38G0912' => 'twi', 'TWI75G1097' => 'twi', 'TWI75G1619' => 'twi', 'TWI79G1336' => 'twi', 'unitig_0.g943' => 'ugi', 'unitig_0.g944' => 'ugi', 'unitig_22.g6646' => 'ugi', 'unitig_37.g12681' => 'ugi', 'unitig_8.g3290' => 'ugi', 'vmacro03278' => 'vma', 'vmacro12197' => 'vma', 'vmacro14478' => 'vma', 'vmacro15787' => 'vma', 'vmacro15789' => 'vma', 'vmacro15790' => 'vma', 'vmacro15806' => 'vma', 'vmacro22907' => 'vma', 'vmacro22908' => 'vma', 'vmacro22909' => 'vma', 'vmacro23108' => 'vma', 'VMungo0540G0540' => 'vmu', 'VMungo0540G2468' => 'vmu', 'VMungo1080G0390' => 'vmu', 'VMungo1080G1165' => 'vmu', 'VMungo1127G0170' => 'vmu', 'VMungo1127G2099' => 'vmu', 'VMungo1215G3013' => 'vmu', 'Zm00001eb013110' => 'zma', 'Zm00001eb084260' => 'zma', 'Zm00001eb096110' => 'zma', 'Zm00001eb217510' => 'zma', 'Zm00001eb322550' => 'zma', 'Zm00001eb390770' => 'zma', 'Zm00001eb397170' => 'zma', 'Zm00001eb404610' => 'zma', 'Zm00001eb421790' => 'zma' ), 'gf_id' => 'HOM05D000911', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000911' ), 'data_identifier' => 'HOM05D000911', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000911', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27780' => 'bna', 'A03p35380' => 'bna', 'A04p21160' => 'bna', 'A05p40570' => 'bna', 'A06p26900' => 'bna', 'A08p33230' => 'bna', 'A09p65960' => 'bna', 'A10p18290' => 'bna', 'Aa31LG1G12990' => 'aar', 'Aa31LG1G2980' => 'aar', 'Aa31LG4G14320' => 'aar', 'Aa31LG7G11800' => 'aar', 'Aa31sc36G50' => 'aar', 'Aa31sc36G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3721' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5459' => 'aag', 'Actinidia03028' => 'ach', 'Actinidia03753' => 'ach', 'Actinidia04187' => 'ach', 'Actinidia05509' => 'ach', 'Actinidia24180' => 'ach', 'Actinidia26906' => 'ach', 'Actinidia37097' => 'ach', 'Actinidia38249' => 'ach', 'Ah.01g003470' => 'amhyb', 'Ah.01g004580' => 'amhyb', 'Ah.01g014850' => 'amhyb', 'Ah.01g016830' => 'amhyb', 'Ah.14g088000' => 'amhyb', 'AL1G22980' => 'aly', 'AL3G18990' => 'aly', 'AL4G22440' => 'aly', 'AL4G33180' => 'aly', 'AL5G22920' => 'aly', 'AL6G33660' => 'aly', 'AL8G20720' => 'aly', 'Aqoxy1G00935' => 'aox', 'Aqoxy1G02094' => 'aox', 'Aqoxy2G01239' => 'aox', 'Aqoxy4G01870' => 'aox', 'Aqoxy7G00450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.36ZVTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71EM27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5D6C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH3WRE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3NCM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RIM768' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YB5YRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z36GDV' => 'arhy', 'AT1G08250' => 'ath', 'AT1G11790' => 'ath', 'AT2G27820' => 'ath', 'AT3G07630' => 'ath', 'AT3G44720' => 'ath', 'AT5G22630' => 'ath', 'ATR0693G304' => 'atr', 'ATR0794G109' => 'atr', 'ATR0820G120' => 'atr', 'ATR1159G064' => 'atr', 'Atru.chr10.2239' => 'acertr', 'Atru.chr3.3371' => 'acertr', 'Atru.chr6.3202' => 'acertr', 'AUR62006499' => 'cqu', 'AUR62012718' => 'cqu', 'AUR62021938' => 'cqu', 'AUR62023932' => 'cqu', 'AUR62025034' => 'cqu', 'AUR62025035' => 'cqu', 'AUR62038307' => 'cqu', 'AUR62043466' => 'cqu', 'BcaB02g10748' => 'bca', 'BcaB03g13231' => 'bca', 'BcaB03g14689' => 'bca', 'BcaB05g22716' => 'bca', 'BcaB06g28172' => 'bca', 'BcaB08g36413' => 'bca', 'BcaC01g02186' => 'bca', 'BcaC01g04272' => 'bca', 'BcaC02g08080' => 'bca', 'BcaC02g08227' => 'bca', 'BcaC03g13901' => 'bca', 'BcaC04g19593' => 'bca', 'BcaC04g20874' => 'bca', 'BcaC05g29557' => 'bca', 'BcaC06g35505' => 'bca', 'BcaC07g41954' => 'bca', 'BcaC07g41955' => 'bca', 'BcaC07g41956' => 'bca', 'BcaC07g42519' => 'bca', 'BcaC07g42520' => 'bca', 'BcaC07g42523' => 'bca', 'BcaC07g42524' => 'bca', 'BcaC07g42525' => 'bca', 'BcaC08g47480' => 'bca', 'BcaC08g47481' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00530' => 'bna', 'BolC2t07178H' => 'bol', 'BolC3t16567H' => 'bol', 'BolC4t27234H' => 'bol', 'BolC5t29728H' => 'bol', 'BolC5t34622H' => 'bol', 'BolC6t40321H' => 'bol', 'BolC7t42028H' => 'bol', 'BolC8t49125H' => 'bol', 'BolC8t52538H' => 'bol', 'BolC8t52539H' => 'bol', 'BolC9t56681H' => 'bol', 'BolC9t58266H' => 'bol', 'BolSC21t60294H' => 'bol', 'BraA02t05670Z' => 'bra', 'BraA03t12716Z' => 'bra', 'BraA04t17685Z' => 'bra', 'BraA05t22788Z' => 'bra', 'BraA06t24032Z' => 'bra', 'BraA06t25625Z' => 'bra', 'BraA07t27930Z' => 'bra', 'BraA08t35242Z' => 'bra', 'BraA09t38609Z' => 'bra', 'BraA10t43905Z' => 'bra', 'C02p11060' => 'bna', 'C03p42990' => 'bna', 'C03p67310' => 'bna', 'C04p56990' => 'bna', 'C04p58660' => 'bna', 'C05p09890' => 'bna', 'C05p59680' => 'bna', 'C06p19830' => 'bna', 'C06p53040' => 'bna', 'C07p15230' => 'bna', 'C08p50070' => 'bna', 'C08p50090' => 'bna', 'C09p38330' => 'bna', 'C09p53940' => 'bna', 'CAN.G1014.1' => 'can', 'CAN.G644.30' => 'can', 'CAN.G84.47' => 'can', 'CAN.G919.8' => 'can', 'CANSAT54G0113' => 'cansat', 'CANSAT54G1286' => 'cansat', 'CANSAT64G1020' => 'cansat', 'CARHR008080' => 'chi', 'CARHR008090' => 'chi', 'CARHR012130' => 'chi', 'CARHR038390' => 'chi', 'CARHR082330' => 'chi', 'CARHR120520' => 'chi', 'CARHR151470' => 'chi', 'CARHR190950' => 'chi', 'Carub.0001s0760' => 'cru', 'Carub.0001s1146' => 'cru', 'Carub.0003s0721' => 'cru', 'Carub.0004s0858' => 'cru', 'Carub.0005s1040' => 'cru', 'Carub.0006s2035' => 'cru', 'Carub.0015s0005' => 'cru', 'Ca_01607_v3' => 'car', 'Ca_01677_v3' => 'car', 'Ca_06087_v3' => 'car', 'Ca_19238_v3' => 'car', 'Ca_19373_v3' => 'car', 'Ca_21079_v3' => 'car', 'CBR_g54016' => 'cbr', 'CBR_g54018' => 'cbr', 'CBR_g54020' => 'cbr', 'Cc01_g09780' => 'ccan', 'Cc01_g11680' => 'ccan', 'Cc02_g15610' => 'ccan', 'Cc05_g04350' => 'ccan', 'Cc09_g01580' => 'ccan', 'CDE01G0795' => 'cde', 'CDE02G2024' => 'cde', 'CDE02G2260' => 'cde', 'CDE02G4561' => 'cde', 'CDE05G2733' => 'cde', 'CDE05G3422' => 'cde', 'CDE06G2003' => 'cde', 'CDE08G0576' => 'cde', 'CDE09G0048' => 'cde', 'CDE11G0805' => 'cde', 'Cfa003644' => 'cfa', 'Cfa006290' => 'cfa', 'Cfa010080' => 'cfa', 'Cfa011376' => 'cfa', 'Cfa011576' => 'cfa', 'Cfa011577' => 'cfa', 'Cfa014389' => 'cfa', 'Ciclev10006044m.g' => 'ccl', 'Ciclev10006954m.g' => 'ccl', 'Ciclev10015131m.g' => 'ccl', 'Ciclev10015580m.g' => 'ccl', 'Ciclev10028359m.g' => 'ccl', 'Ciclev10028573m.g' => 'ccl', 'CiPaw.03G159300' => 'cil', 'CiPaw.04G115100' => 'cil', 'CiPaw.09G092800' => 'cil', 'CiPaw.10G071800' => 'cil', 'CiPaw.13G105800' => 'cil', 'CiPaw.13G141000' => 'cil', 'CiPaw.14G103400' => 'cil', 'ClCG01G012700' => 'cla', 'ClCG01G012720' => 'cla', 'ClCG01G021920' => 'cla', 'ClCG02G008870' => 'cla', 'ClCG02G020840' => 'cla', 'ClCG02G021930' => 'cla', 'COL.COLO4_19302' => 'col', 'COL.COLO4_25262' => 'col', 'COL.COLO4_31788' => 'col', 'Cpa.g.c34684' => 'cpa', 'Cpa.g.c36520.1' => 'cpa', 'Cpa.g.c45626' => 'cpa', 'Cpa.g.sc121.17' => 'cpa', 'Cpa.g.sc13.22' => 'cpa', 'Cpa.g.sc87.88' => 'cpa', 'Cre06.g261800' => 'cre', 'CsaV3_1G014500' => 'csa', 'CsaV3_1G014510' => 'csa', 'CsaV3_2G034880' => 'csa', 'CsaV3_6G014760' => 'csa', 'CsaV3_6G021500' => 'csa', 'CsaV3_6G048980' => 'csa', 'CSS0002511' => 'camsi', 'CSS0007556' => 'camsi', 'CSS0008532' => 'camsi', 'CSS0009709' => 'camsi', 'CSS0010486' => 'camsi', 'CSS0016768' => 'camsi', 'CSS0023512' => 'camsi', 'CSS0025341' => 'camsi', 'CSS0027999' => 'camsi', 'CSS0028944' => 'camsi', 'CSS0032292' => 'camsi', 'CSS0032464' => 'camsi', 'CSS0037153' => 'camsi', 'CSS0039256' => 'camsi', 'CSS0048392' => 'camsi', 'CSS0050458' => 'camsi', 'DCAR_004224' => 'dca', 'DCAR_006147' => 'dca', 'DCAR_006465' => 'dca', 'DCAR_008159' => 'dca', 'DCAR_012164' => 'dca', 'DCAR_019764' => 'dca', 'Dinv05418' => 'din', 'Dinv10839' => 'din', 'Dinv12521' => 'din', 'Dinv13900' => 'din', 'Dinv29426' => 'din', 'Duzib150G0263' => 'dzi', 'Duzib168G1178' => 'dzi', 'Duzib168G1924' => 'dzi', 'Duzib170G0299' => 'dzi', 'Duzib170G0813' => 'dzi', 'Duzib235G1128' => 'dzi', 'Duzib248G1060' => 'dzi', 'ECA232G1910' => 'eca', 'ECA233G4621' => 'eca', 'ECA238G1216' => 'eca', 'ECA238G1784' => 'eca', 'ECA248G1242' => 'eca', 'EL10Ac8g20071' => 'bvu', 'EL10Ac9g21086' => 'bvu', 'EL10Ac9g22407' => 'bvu', 'EL10Ac9g22412' => 'bvu', 'Eucgr.A01119' => 'egr', 'Eucgr.E04043' => 'egr', 'Eucgr.J00428' => 'egr', 'Eucgr.J00958' => 'egr', 'FAN11G3091' => 'fan', 'FAN11G3651' => 'fan', 'FAN16G2566' => 'fan', 'FAN21G3155' => 'fan', 'FAN21G3400' => 'fan', 'FAN21G3543' => 'fan', 'FAN25G0234' => 'fan', 'FAN25G1422' => 'fan', 'FAN25G3392' => 'fan', 'FvH4_3g01940' => 'fve', 'FvH4_3g29870' => 'fve', 'FvH4_3g33680' => 'fve', 'Glyma.09G004200' => 'gma', 'Glyma.11G151288' => 'gma', 'Glyma.11G189100' => 'gma', 'Glyma.12G072500' => 'gma', 'Glyma.12G085500' => 'gma', 'Glyma.12G181800' => 'gma', 'Glyma.12G193000' => 'gma', 'Glyma.13G309300' => 'gma', 'Glyma.13G319000' => 'gma', 'Glyma.17G012600' => 'gma', 'Gohir.A06G148600' => 'ghi', 'Gohir.A07G115800' => 'ghi', 'Gohir.A08G003600' => 'ghi', 'Gohir.A09G093300' => 'ghi', 'Gohir.A09G105400' => 'ghi', 'Gohir.A09G105500' => 'ghi', 'Gohir.D06G154600' => 'ghi', 'Gohir.D07G120200' => 'ghi', 'Gohir.D08G013900' => 'ghi', 'Gohir.D09G093100' => 'ghi', 'Gohir.D09G102200' => 'ghi', 'Gohir.D09G102300' => 'ghi', 'Gorai.001G129400' => 'gra', 'Gorai.004G008200' => 'gra', 'Gorai.006G109800' => 'gra', 'Gorai.006G119500' => 'gra', 'Gorai.006G121300' => 'gra', 'Gorai.010G180700' => 'gra', 'GSVIVG01012716001' => 'vvi', 'GSVIVG01025118001' => 'vvi', 'GSVIVG01030439001' => 'vvi', 'GSVIVG01031397001' => 'vvi', 'HanXRQChr01g0004201' => 'han', 'HanXRQChr02g0054941' => 'han', 'HanXRQChr05g0141811' => 'han', 'HanXRQChr07g0197751' => 'han', 'HanXRQChr11g0346691' => 'han', 'HanXRQChr13g0396971' => 'han', 'HanXRQChr14g0432951' => 'han', 'HanXRQChr14g0452001' => 'han', 'HanXRQChr15g0496681' => 'han', 'HanXRQChr17g0557491' => 'han', 'HanXRQChr17g0557501' => 'han', 'Haze_06809' => 'cav', 'Haze_12852' => 'cav', 'Haze_15850' => 'cav', 'Haze_23446' => 'cav', 'Haze_23942' => 'cav', 'Haze_23943' => 'cav', 'Hma1.2p1_0091F.1_g046450' => 'hma', 'Hma1.2p1_0128F.1_g059910' => 'hma', 'Hma1.2p1_0249F.1_g102260' => 'hma', 'Hma1.2p1_0453F.1_g156190' => 'hma', 'Hma1.2p1_0695F.1_g204380' => 'hma', 'Hma1.2p1_0749F.1_g212650' => 'hma', 'Hma1.2p1_2156F.1_g315420' => 'hma', 'Hma1.2p1_2686F.1_g326940' => 'hma', 'HPP92_006428' => 'vpl', 'HPP92_012069' => 'vpl', 'HPP92_014129' => 'vpl', 'HPP92_014133' => 'vpl', 'HPP92_017315' => 'vpl', 'HPP92_026445' => 'vpl', 'HPP92_026446' => 'vpl', 'Hund00774' => 'sun', 'Hund07682' => 'sun', 'Hund21413' => 'sun', 'Hund23462' => 'sun', 'Hund23463' => 'sun', 'Lalb_Chr03g0027911' => 'lal', 'Lalb_Chr13g0304271' => 'lal', 'Lalb_Chr19g0137471' => 'lal', 'Lalb_Chr22g0350651' => 'lal', 'Lalb_Chr24g0395151' => 'lal', 'Lj1A1231T40' => 'lonja', 'Lj1A221T48' => 'lonja', 'Lj1C924T12' => 'lonja', 'Lj2C993G6' => 'lonja', 'Lj3g0005790' => 'lja', 'Lj3g0015432' => 'lja', 'Lj3g0017722' => 'lja', 'Lj3g0018497' => 'lja', 'Lj4g0025071' => 'lja', 'Lsat_1_v5_gn_1_129680' => 'lsa', 'Lsat_1_v5_gn_2_25321' => 'lsa', 'Lsat_1_v5_gn_2_95461' => 'lsa', 'Lsat_1_v5_gn_4_159620' => 'lsa', 'Lsat_1_v5_gn_6_41301' => 'lsa', 'Lsat_1_v5_gn_6_74660' => 'lsa', 'Lsat_1_v5_gn_7_11520' => 'lsa', 'Lsat_1_v5_gn_9_67680' => 'lsa', 'Manes.04G008300' => 'mes', 'Manes.04G008400' => 'mes', 'Manes.04G026500' => 'mes', 'Manes.10G135300' => 'mes', 'Manes.11G157300' => 'mes', 'Manes.12G074000' => 'mes', 'Manes.16G006200' => 'mes', 'Manes.17G026400' => 'mes', 'Mapoly0024s0086' => 'mpo', 'Mapoly0024s0087' => 'mpo', 'Mapoly0071s0057' => 'mpo', 'Mapoly0204s0012' => 'mpo', 'MBI04_g37681_MAGBIO' => 'mbi', 'MBI05_g17779_MAGBIO' => 'mbi', 'MBI12_g31184_MAGBIO' => 'mbi', 'MBI17_g11083_MAGBIO' => 'mbi', 'MBI18_g03883_MAGBIO' => 'mbi', 'MBI18_g28940_MAGBIO' => 'mbi', 'MCO01G690' => 'mco', 'MD03G1109900' => 'mdo', 'MD03G1134800' => 'mdo', 'MD05G1348000' => 'mdo', 'MD10G1322400' => 'mdo', 'MD11G1123300' => 'mdo', 'MD11G1157600' => 'mdo', 'Medtr2g084875' => 'mtr', 'Medtr2g088130' => 'mtr', 'Medtr4g055310' => 'mtr', 'Medtr4g061070' => 'mtr', 'Medtr4g132250' => 'mtr', 'MELO3C004795.2' => 'cme', 'MELO3C004797.2' => 'cme', 'MELO3C007396.2' => 'cme', 'MELO3C019277.2' => 'cme', 'MELO3C021449.2' => 'cme', 'MELO3C025736.2' => 'cme', 'Migut.D02175' => 'egut', 'Migut.H01573' => 'egut', 'Migut.M01327' => 'egut', 'Migut.N02513' => 'egut', 'MSTRG.14638' => 'ama', 'MSTRG.18632' => 'ama', 'MSTRG.7203' => 'ama', 'Nitab4.5_0000533g0140' => 'nta', 'Nitab4.5_0000888g0150' => 'nta', 'Nitab4.5_0001453g0040' => 'nta', 'Nitab4.5_0002827g0090' => 'nta', 'Nitab4.5_0003082g0040' => 'nta', 'Nitab4.5_0007799g0040' => 'nta', 'Nitab4.5_0008983g0010' => 'nta', 'Nitab4.5_0009017g0020' => 'nta', 'Nn1g02132' => 'nnu', 'Nn1g03492' => 'nnu', 'Nn1g03493' => 'nnu', 'Nn1g03494' => 'nnu', 'Nn1g07164' => 'nnu', 'Nn1g07291' => 'nnu', 'Nn2g10655' => 'nnu', 'Nn2g11652' => 'nnu', 'Nn2g14008' => 'nnu', 'Nn3g17476' => 'nnu', 'Nn3g17477' => 'nnu', 'Nn4g22370' => 'nnu', 'Nn4g25255' => 'nnu', 'Nn5g27755' => 'nnu', 'Nn6g34260' => 'nnu', 'Nn6g35041' => 'nnu', 'Oeu005924.1' => 'oeu', 'Oeu008383.1' => 'oeu', 'Oeu014928.1' => 'oeu', 'Oeu019889.1' => 'oeu', 'Oeu022271.1' => 'oeu', 'Oeu025271.1' => 'oeu', 'Oeu036302.1' => 'oeu', 'Oeu044100.1' => 'oeu', 'Os01g0528300' => 'osa', 'Os03g0286200' => 'osa', 'Os04g0406600' => 'osa', 'Os07g0512000' => 'osa', 'Os07g0694600' => 'osa', 'Os08g0411000' => 'osa', 'Os09g0565700' => 'osa', 'Os09g0566050' => 'osa', 'Os10g0523700' => 'osa', 'Peaxi162Scf00002g00514' => 'pax', 'Peaxi162Scf00047g01817' => 'pax', 'Peaxi162Scf00114g00001' => 'pax', 'Peaxi162Scf00147g00613' => 'pax', 'Peaxi162Scf00389g00425' => 'pax', 'PGR042G1139' => 'pgr', 'PGR042G3273' => 'pgr', 'PGR102G2180' => 'pgr', 'PGR119G0234' => 'pgr', 'PGR119G0668' => 'pgr', 'PGSC0003DMG400007122' => 'stu', 'PGSC0003DMG400016478' => 'stu', 'PGSC0003DMG400025374' => 'stu', 'PGSC0003DMG400026536' => 'stu', 'Phvul.003G079600' => 'pvu', 'Phvul.005G115600' => 'pvu', 'Phvul.005G127100' => 'pvu', 'Phvul.006G149500' => 'pvu', 'Phvul.006G149600' => 'pvu', 'Phvul.011G071800' => 'pvu', 'Phvul.011G090400' => 'pvu', 'Potri.004G013400' => 'ptr', 'Potri.004G188100' => 'ptr', 'Potri.008G195500' => 'ptr', 'Potri.009G148800' => 'ptr', 'Potri.011G004700' => 'ptr', 'Pp3c17_22810' => 'ppa', 'Pp3c18_4480' => 'ppa', 'Pp3c19_13030' => 'ppa', 'Pp3c1_33620' => 'ppa', 'Pp3c2_9380' => 'ppa', 'PRCOL_00001023' => 'pco', 'Prupe.3G216300' => 'ppe', 'Prupe.4G019500' => 'ppe', 'Prupe.6G092500' => 'ppe', 'Prupe.6G119200' => 'ppe', 'Psat0s1945g0080' => 'psa', 'Psat0s4167g0040' => 'psa', 'Psat1g185800' => 'psa', 'Psat4g006440' => 'psa', 'Psat4g006480' => 'psa', 'Psat4g168120' => 'psa', 'Psat5g255680' => 'psa', 'Psat5g261760' => 'psa', 'Psat7g222120' => 'psa', 'PSO063G7252' => 'pso', 'PSO170G4778' => 'pso', 'PSO210G2249' => 'pso', 'PSO339G2411' => 'pso', 'PSO339G2457' => 'pso', 'PSO339G2854' => 'pso', 'PSO339G4288' => 'pso', 'PSO339G4615' => 'pso', 'PSO384G2796' => 'pso', 'PSO384G2940' => 'pso', 'PSO384G4227' => 'pso', 'PSO478G1425' => 'pso', 'PSO541G3863' => 'pso', 'PSO675G0507' => 'pso', 'PSO782G0338' => 'pso', 'PSO832G0644' => 'pso', 'QL01p013664' => 'qlo', 'QL01p036598' => 'qlo', 'QL05p072984' => 'qlo', 'QL08p005768' => 'qlo', 'QL08p032743' => 'qlo', 'QL93p0073_0439' => 'qlo', 'QL93p0073_0444' => 'qlo', 'RcHm_v2.0_Chr5g0002851' => 'rch', 'RcHm_v2.0_Chr5g0055201' => 'rch', 'RcHm_v2.0_Chr5g0061191' => 'rch', 'RcHm_v2.0_Chr7g0203231' => 'rch', 'Rhsim01G0208100' => 'rsi', 'Rhsim01G0208200' => 'rsi', 'Rhsim02G0106500' => 'rsi', 'Rhsim03G0107900' => 'rsi', 'Rhsim06G0163400' => 'rsi', 'Rhsim13G0105200' => 'rsi', 'Sabra04G0006300' => 'sbr', 'Sabra04G0127000' => 'sbr', 'Sabra08G0148700' => 'sbr', 'Sabra09G0117400' => 'sbr', 'SalBow1G3326' => 'sbo', 'SalBow3G3228' => 'sbo', 'SalBow6G1634' => 'sbo', 'SalBow6G3603' => 'sbo', 'SalBow6G5266' => 'sbo', 'SalBow7G2265' => 'sbo', 'SalBow8G0850' => 'sbo', 'SalBow8G2592' => 'sbo', 'Sc05g0009240' => 'sci', 'Sc12g0002300' => 'sci', 'Sc21g0000100' => 'sci', 'Sc21g0004720' => 'sci', 'Sed0002949' => 'sed', 'Sed0004114' => 'sed', 'Sed0004306' => 'sed', 'Sed0006172' => 'sed', 'Sed0008413' => 'sed', 'Sed0013809' => 'sed', 'Sed0019556' => 'sed', 'SEGI_03570' => 'sgi', 'SEGI_07859' => 'sgi', 'SEGI_15042' => 'sgi', 'SEGI_16263' => 'sgi', 'SEGI_16552' => 'sgi', 'SEGI_24331' => 'sgi', 'SEGI_27316' => 'sgi', 'SEGI_29521' => 'sgi', 'SEGI_41342' => 'sgi', 'SGA_v2.0_scaffold27G11617' => 'sas', 'SGA_v2.0_scaffold316G48428' => 'sas', 'SGA_v2.0_scaffold49G18261' => 'sas', 'SGA_v2.0_scaffold7G03831' => 'sas', 'SGA_v2.0_scaffold93G28359' => 'sas', 'SHI02210' => 'shi', 'SHI06028' => 'shi', 'SHI06321' => 'shi', 'SMO111G0012' => 'smo', 'SMO228G0080' => 'smo', 'SMO356G0756' => 'smo', 'Solyc02g080620.3' => 'sly', 'Solyc06g074530.1' => 'sly', 'Solyc11g066890.1' => 'sly', 'Solyc11g072520.3' => 'sly', 'Sopen02g025330' => 'spe', 'Sopen06g031000' => 'spe', 'Sopen09g008240' => 'spe', 'Sopen09g025210' => 'spe', 'Sopen11g026600' => 'spe', 'Sopen11g030170' => 'spe', 'Sp1g10420' => 'spa', 'Sp3g06570' => 'spa', 'Sp4g10660' => 'spa', 'Sp5g16460' => 'spa', 'Sp6g22710' => 'spa', 'TAR365G0112' => 'tar', 'TAR369G0717' => 'tar', 'TAR374G0976' => 'tar', 'TAR623G1128' => 'tar', 'TAR626G1937' => 'tar', 'TAR627G0123' => 'tar', 'TAR628G0305' => 'tar', 'TAR636G1176' => 'tar', 'TAR636G2442' => 'tar', 'THA.LOC104800556' => 'tha', 'THA.LOC104809501' => 'tha', 'THA.LOC104815126' => 'tha', 'THA.LOC104815732' => 'tha', 'THA.LOC104823528' => 'tha', 'Thecc.02G365600' => 'tca', 'Thecc.06G222300' => 'tca', 'Thecc.09G261800' => 'tca', 'Thecc.09G291400' => 'tca', 'Thhalv10003028m.g' => 'esa', 'Thhalv10007886m.g' => 'esa', 'Thhalv10016085m.g' => 'esa', 'Thhalv10016681m.g' => 'esa', 'Thhalv10020951m.g' => 'esa', 'TPR.G15598' => 'tpr', 'TPR.G29305' => 'tpr', 'TPR.G32395' => 'tpr', 'TPR.G36998' => 'tpr', 'TPR.G4227' => 'tpr', 'TWI18G1433' => 'twi', 'TWI31G0755' => 'twi', 'TWI38G0912' => 'twi', 'TWI75G1097' => 'twi', 'TWI75G1619' => 'twi', 'TWI79G1336' => 'twi', 'unitig_0.g943' => 'ugi', 'unitig_0.g944' => 'ugi', 'unitig_22.g6646' => 'ugi', 'unitig_37.g12681' => 'ugi', 'unitig_8.g3290' => 'ugi', 'vmacro03278' => 'vma', 'vmacro12197' => 'vma', 'vmacro14478' => 'vma', 'vmacro15787' => 'vma', 'vmacro15789' => 'vma', 'vmacro15790' => 'vma', 'vmacro15806' => 'vma', 'vmacro22907' => 'vma', 'vmacro22908' => 'vma', 'vmacro22909' => 'vma', 'vmacro23108' => 'vma', 'VMungo0540G0540' => 'vmu', 'VMungo0540G2468' => 'vmu', 'VMungo1080G0390' => 'vmu', 'VMungo1080G1165' => 'vmu', 'VMungo1127G0170' => 'vmu', 'VMungo1127G2099' => 'vmu', 'VMungo1215G3013' => 'vmu', 'Zm00001eb013110' => 'zma', 'Zm00001eb084260' => 'zma', 'Zm00001eb096110' => 'zma', 'Zm00001eb217510' => 'zma', 'Zm00001eb322550' => 'zma', 'Zm00001eb390770' => 'zma', 'Zm00001eb397170' => 'zma', 'Zm00001eb404610' => 'zma', 'Zm00001eb421790' => 'zma' ) $gf_id = 'HOM05D000911' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000911' ) $data_identifier = 'HOM05D000911' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 16, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 5, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 6, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 8, 'nnu' => (int) 16, 'oeu' => (int) 8, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 5, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 16, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421790' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000911', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27780' => 'bna', 'A03p35380' => 'bna', 'A04p21160' => 'bna', 'A05p40570' => 'bna', 'A06p26900' => 'bna', 'A08p33230' => 'bna', 'A09p65960' => 'bna', 'A10p18290' => 'bna', 'Aa31LG1G12990' => 'aar', 'Aa31LG1G2980' => 'aar', 'Aa31LG4G14320' => 'aar', 'Aa31LG7G11800' => 'aar', 'Aa31sc36G50' => 'aar', 'Aa31sc36G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3721' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5459' => 'aag', 'Actinidia03028' => 'ach', 'Actinidia03753' => 'ach', 'Actinidia04187' => 'ach', 'Actinidia05509' => 'ach', 'Actinidia24180' => 'ach', 'Actinidia26906' => 'ach', 'Actinidia37097' => 'ach', 'Actinidia38249' => 'ach', 'Ah.01g003470' => 'amhyb', 'Ah.01g004580' => 'amhyb', 'Ah.01g014850' => 'amhyb', 'Ah.01g016830' => 'amhyb', 'Ah.14g088000' => 'amhyb', 'AL1G22980' => 'aly', 'AL3G18990' => 'aly', 'AL4G22440' => 'aly', 'AL4G33180' => 'aly', 'AL5G22920' => 'aly', 'AL6G33660' => 'aly', 'AL8G20720' => 'aly', 'Aqoxy1G00935' => 'aox', 'Aqoxy1G02094' => 'aox', 'Aqoxy2G01239' => 'aox', 'Aqoxy4G01870' => 'aox', 'Aqoxy7G00450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.36ZVTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71EM27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5D6C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH3WRE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3NCM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RIM768' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YB5YRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z36GDV' => 'arhy', 'AT1G08250' => 'ath', 'AT1G11790' => 'ath', 'AT2G27820' => 'ath', 'AT3G07630' => 'ath', 'AT3G44720' => 'ath', 'AT5G22630' => 'ath', 'ATR0693G304' => 'atr', 'ATR0794G109' => 'atr', 'ATR0820G120' => 'atr', 'ATR1159G064' => 'atr', 'Atru.chr10.2239' => 'acertr', 'Atru.chr3.3371' => 'acertr', 'Atru.chr6.3202' => 'acertr', 'AUR62006499' => 'cqu', 'AUR62012718' => 'cqu', 'AUR62021938' => 'cqu', 'AUR62023932' => 'cqu', 'AUR62025034' => 'cqu', 'AUR62025035' => 'cqu', 'AUR62038307' => 'cqu', 'AUR62043466' => 'cqu', 'BcaB02g10748' => 'bca', 'BcaB03g13231' => 'bca', 'BcaB03g14689' => 'bca', 'BcaB05g22716' => 'bca', 'BcaB06g28172' => 'bca', 'BcaB08g36413' => 'bca', 'BcaC01g02186' => 'bca', 'BcaC01g04272' => 'bca', 'BcaC02g08080' => 'bca', 'BcaC02g08227' => 'bca', 'BcaC03g13901' => 'bca', 'BcaC04g19593' => 'bca', 'BcaC04g20874' => 'bca', 'BcaC05g29557' => 'bca', 'BcaC06g35505' => 'bca', 'BcaC07g41954' => 'bca', 'BcaC07g41955' => 'bca', 'BcaC07g41956' => 'bca', 'BcaC07g42519' => 'bca', 'BcaC07g42520' => 'bca', 'BcaC07g42523' => 'bca', 'BcaC07g42524' => 'bca', 'BcaC07g42525' => 'bca', 'BcaC08g47480' => 'bca', 'BcaC08g47481' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00530' => 'bna', 'BolC2t07178H' => 'bol', 'BolC3t16567H' => 'bol', 'BolC4t27234H' => 'bol', 'BolC5t29728H' => 'bol', 'BolC5t34622H' => 'bol', 'BolC6t40321H' => 'bol', 'BolC7t42028H' => 'bol', 'BolC8t49125H' => 'bol', 'BolC8t52538H' => 'bol', 'BolC8t52539H' => 'bol', 'BolC9t56681H' => 'bol', 'BolC9t58266H' => 'bol', 'BolSC21t60294H' => 'bol', 'BraA02t05670Z' => 'bra', 'BraA03t12716Z' => 'bra', 'BraA04t17685Z' => 'bra', 'BraA05t22788Z' => 'bra', 'BraA06t24032Z' => 'bra', 'BraA06t25625Z' => 'bra', 'BraA07t27930Z' => 'bra', 'BraA08t35242Z' => 'bra', 'BraA09t38609Z' => 'bra', 'BraA10t43905Z' => 'bra', 'C02p11060' => 'bna', 'C03p42990' => 'bna', 'C03p67310' => 'bna', 'C04p56990' => 'bna', 'C04p58660' => 'bna', 'C05p09890' => 'bna', 'C05p59680' => 'bna', 'C06p19830' => 'bna', 'C06p53040' => 'bna', 'C07p15230' => 'bna', 'C08p50070' => 'bna', 'C08p50090' => 'bna', 'C09p38330' => 'bna', 'C09p53940' => 'bna', 'CAN.G1014.1' => 'can', 'CAN.G644.30' => 'can', 'CAN.G84.47' => 'can', 'CAN.G919.8' => 'can', 'CANSAT54G0113' => 'cansat', 'CANSAT54G1286' => 'cansat', 'CANSAT64G1020' => 'cansat', 'CARHR008080' => 'chi', 'CARHR008090' => 'chi', 'CARHR012130' => 'chi', 'CARHR038390' => 'chi', 'CARHR082330' => 'chi', 'CARHR120520' => 'chi', 'CARHR151470' => 'chi', 'CARHR190950' => 'chi', 'Carub.0001s0760' => 'cru', 'Carub.0001s1146' => 'cru', 'Carub.0003s0721' => 'cru', 'Carub.0004s0858' => 'cru', 'Carub.0005s1040' => 'cru', 'Carub.0006s2035' => 'cru', 'Carub.0015s0005' => 'cru', 'Ca_01607_v3' => 'car', 'Ca_01677_v3' => 'car', 'Ca_06087_v3' => 'car', 'Ca_19238_v3' => 'car', 'Ca_19373_v3' => 'car', 'Ca_21079_v3' => 'car', 'CBR_g54016' => 'cbr', 'CBR_g54018' => 'cbr', 'CBR_g54020' => 'cbr', 'Cc01_g09780' => 'ccan', 'Cc01_g11680' => 'ccan', 'Cc02_g15610' => 'ccan', 'Cc05_g04350' => 'ccan', 'Cc09_g01580' => 'ccan', 'CDE01G0795' => 'cde', 'CDE02G2024' => 'cde', 'CDE02G2260' => 'cde', 'CDE02G4561' => 'cde', 'CDE05G2733' => 'cde', 'CDE05G3422' => 'cde', 'CDE06G2003' => 'cde', 'CDE08G0576' => 'cde', 'CDE09G0048' => 'cde', 'CDE11G0805' => 'cde', 'Cfa003644' => 'cfa', 'Cfa006290' => 'cfa', 'Cfa010080' => 'cfa', 'Cfa011376' => 'cfa', 'Cfa011576' => 'cfa', 'Cfa011577' => 'cfa', 'Cfa014389' => 'cfa', 'Ciclev10006044m.g' => 'ccl', 'Ciclev10006954m.g' => 'ccl', 'Ciclev10015131m.g' => 'ccl', 'Ciclev10015580m.g' => 'ccl', 'Ciclev10028359m.g' => 'ccl', 'Ciclev10028573m.g' => 'ccl', 'CiPaw.03G159300' => 'cil', 'CiPaw.04G115100' => 'cil', 'CiPaw.09G092800' => 'cil', 'CiPaw.10G071800' => 'cil', 'CiPaw.13G105800' => 'cil', 'CiPaw.13G141000' => 'cil', 'CiPaw.14G103400' => 'cil', 'ClCG01G012700' => 'cla', 'ClCG01G012720' => 'cla', 'ClCG01G021920' => 'cla', 'ClCG02G008870' => 'cla', 'ClCG02G020840' => 'cla', 'ClCG02G021930' => 'cla', 'COL.COLO4_19302' => 'col', 'COL.COLO4_25262' => 'col', 'COL.COLO4_31788' => 'col', 'Cpa.g.c34684' => 'cpa', 'Cpa.g.c36520.1' => 'cpa', 'Cpa.g.c45626' => 'cpa', 'Cpa.g.sc121.17' => 'cpa', 'Cpa.g.sc13.22' => 'cpa', 'Cpa.g.sc87.88' => 'cpa', 'Cre06.g261800' => 'cre', 'CsaV3_1G014500' => 'csa', 'CsaV3_1G014510' => 'csa', 'CsaV3_2G034880' => 'csa', 'CsaV3_6G014760' => 'csa', 'CsaV3_6G021500' => 'csa', 'CsaV3_6G048980' => 'csa', 'CSS0002511' => 'camsi', 'CSS0007556' => 'camsi', 'CSS0008532' => 'camsi', 'CSS0009709' => 'camsi', 'CSS0010486' => 'camsi', 'CSS0016768' => 'camsi', 'CSS0023512' => 'camsi', 'CSS0025341' => 'camsi', 'CSS0027999' => 'camsi', 'CSS0028944' => 'camsi', 'CSS0032292' => 'camsi', 'CSS0032464' => 'camsi', 'CSS0037153' => 'camsi', 'CSS0039256' => 'camsi', 'CSS0048392' => 'camsi', 'CSS0050458' => 'camsi', 'DCAR_004224' => 'dca', 'DCAR_006147' => 'dca', 'DCAR_006465' => 'dca', 'DCAR_008159' => 'dca', 'DCAR_012164' => 'dca', 'DCAR_019764' => 'dca', 'Dinv05418' => 'din', 'Dinv10839' => 'din', 'Dinv12521' => 'din', 'Dinv13900' => 'din', 'Dinv29426' => 'din', 'Duzib150G0263' => 'dzi', 'Duzib168G1178' => 'dzi', 'Duzib168G1924' => 'dzi', 'Duzib170G0299' => 'dzi', 'Duzib170G0813' => 'dzi', 'Duzib235G1128' => 'dzi', 'Duzib248G1060' => 'dzi', 'ECA232G1910' => 'eca', 'ECA233G4621' => 'eca', 'ECA238G1216' => 'eca', 'ECA238G1784' => 'eca', 'ECA248G1242' => 'eca', 'EL10Ac8g20071' => 'bvu', 'EL10Ac9g21086' => 'bvu', 'EL10Ac9g22407' => 'bvu', 'EL10Ac9g22412' => 'bvu', 'Eucgr.A01119' => 'egr', 'Eucgr.E04043' => 'egr', 'Eucgr.J00428' => 'egr', 'Eucgr.J00958' => 'egr', 'FAN11G3091' => 'fan', 'FAN11G3651' => 'fan', 'FAN16G2566' => 'fan', 'FAN21G3155' => 'fan', 'FAN21G3400' => 'fan', 'FAN21G3543' => 'fan', 'FAN25G0234' => 'fan', 'FAN25G1422' => 'fan', 'FAN25G3392' => 'fan', 'FvH4_3g01940' => 'fve', 'FvH4_3g29870' => 'fve', 'FvH4_3g33680' => 'fve', 'Glyma.09G004200' => 'gma', 'Glyma.11G151288' => 'gma', 'Glyma.11G189100' => 'gma', 'Glyma.12G072500' => 'gma', 'Glyma.12G085500' => 'gma', 'Glyma.12G181800' => 'gma', 'Glyma.12G193000' => 'gma', 'Glyma.13G309300' => 'gma', 'Glyma.13G319000' => 'gma', 'Glyma.17G012600' => 'gma', 'Gohir.A06G148600' => 'ghi', 'Gohir.A07G115800' => 'ghi', 'Gohir.A08G003600' => 'ghi', 'Gohir.A09G093300' => 'ghi', 'Gohir.A09G105400' => 'ghi', 'Gohir.A09G105500' => 'ghi', 'Gohir.D06G154600' => 'ghi', 'Gohir.D07G120200' => 'ghi', 'Gohir.D08G013900' => 'ghi', 'Gohir.D09G093100' => 'ghi', 'Gohir.D09G102200' => 'ghi', 'Gohir.D09G102300' => 'ghi', 'Gorai.001G129400' => 'gra', 'Gorai.004G008200' => 'gra', 'Gorai.006G109800' => 'gra', 'Gorai.006G119500' => 'gra', 'Gorai.006G121300' => 'gra', 'Gorai.010G180700' => 'gra', 'GSVIVG01012716001' => 'vvi', 'GSVIVG01025118001' => 'vvi', 'GSVIVG01030439001' => 'vvi', 'GSVIVG01031397001' => 'vvi', 'HanXRQChr01g0004201' => 'han', 'HanXRQChr02g0054941' => 'han', 'HanXRQChr05g0141811' => 'han', 'HanXRQChr07g0197751' => 'han', 'HanXRQChr11g0346691' => 'han', 'HanXRQChr13g0396971' => 'han', 'HanXRQChr14g0432951' => 'han', 'HanXRQChr14g0452001' => 'han', 'HanXRQChr15g0496681' => 'han', 'HanXRQChr17g0557491' => 'han', 'HanXRQChr17g0557501' => 'han', 'Haze_06809' => 'cav', 'Haze_12852' => 'cav', 'Haze_15850' => 'cav', 'Haze_23446' => 'cav', 'Haze_23942' => 'cav', 'Haze_23943' => 'cav', 'Hma1.2p1_0091F.1_g046450' => 'hma', 'Hma1.2p1_0128F.1_g059910' => 'hma', 'Hma1.2p1_0249F.1_g102260' => 'hma', 'Hma1.2p1_0453F.1_g156190' => 'hma', 'Hma1.2p1_0695F.1_g204380' => 'hma', 'Hma1.2p1_0749F.1_g212650' => 'hma', 'Hma1.2p1_2156F.1_g315420' => 'hma', 'Hma1.2p1_2686F.1_g326940' => 'hma', 'HPP92_006428' => 'vpl', 'HPP92_012069' => 'vpl', 'HPP92_014129' => 'vpl', 'HPP92_014133' => 'vpl', 'HPP92_017315' => 'vpl', 'HPP92_026445' => 'vpl', 'HPP92_026446' => 'vpl', 'Hund00774' => 'sun', 'Hund07682' => 'sun', 'Hund21413' => 'sun', 'Hund23462' => 'sun', 'Hund23463' => 'sun', 'Lalb_Chr03g0027911' => 'lal', 'Lalb_Chr13g0304271' => 'lal', 'Lalb_Chr19g0137471' => 'lal', 'Lalb_Chr22g0350651' => 'lal', 'Lalb_Chr24g0395151' => 'lal', 'Lj1A1231T40' => 'lonja', 'Lj1A221T48' => 'lonja', 'Lj1C924T12' => 'lonja', 'Lj2C993G6' => 'lonja', 'Lj3g0005790' => 'lja', 'Lj3g0015432' => 'lja', 'Lj3g0017722' => 'lja', 'Lj3g0018497' => 'lja', 'Lj4g0025071' => 'lja', 'Lsat_1_v5_gn_1_129680' => 'lsa', 'Lsat_1_v5_gn_2_25321' => 'lsa', 'Lsat_1_v5_gn_2_95461' => 'lsa', 'Lsat_1_v5_gn_4_159620' => 'lsa', 'Lsat_1_v5_gn_6_41301' => 'lsa', 'Lsat_1_v5_gn_6_74660' => 'lsa', 'Lsat_1_v5_gn_7_11520' => 'lsa', 'Lsat_1_v5_gn_9_67680' => 'lsa', 'Manes.04G008300' => 'mes', 'Manes.04G008400' => 'mes', 'Manes.04G026500' => 'mes', 'Manes.10G135300' => 'mes', 'Manes.11G157300' => 'mes', 'Manes.12G074000' => 'mes', 'Manes.16G006200' => 'mes', 'Manes.17G026400' => 'mes', 'Mapoly0024s0086' => 'mpo', 'Mapoly0024s0087' => 'mpo', 'Mapoly0071s0057' => 'mpo', 'Mapoly0204s0012' => 'mpo', 'MBI04_g37681_MAGBIO' => 'mbi', 'MBI05_g17779_MAGBIO' => 'mbi', 'MBI12_g31184_MAGBIO' => 'mbi', 'MBI17_g11083_MAGBIO' => 'mbi', 'MBI18_g03883_MAGBIO' => 'mbi', 'MBI18_g28940_MAGBIO' => 'mbi', 'MCO01G690' => 'mco', 'MD03G1109900' => 'mdo', 'MD03G1134800' => 'mdo', 'MD05G1348000' => 'mdo', 'MD10G1322400' => 'mdo', 'MD11G1123300' => 'mdo', 'MD11G1157600' => 'mdo', 'Medtr2g084875' => 'mtr', 'Medtr2g088130' => 'mtr', 'Medtr4g055310' => 'mtr', 'Medtr4g061070' => 'mtr', 'Medtr4g132250' => 'mtr', 'MELO3C004795.2' => 'cme', 'MELO3C004797.2' => 'cme', 'MELO3C007396.2' => 'cme', 'MELO3C019277.2' => 'cme', 'MELO3C021449.2' => 'cme', 'MELO3C025736.2' => 'cme', 'Migut.D02175' => 'egut', 'Migut.H01573' => 'egut', 'Migut.M01327' => 'egut', 'Migut.N02513' => 'egut', 'MSTRG.14638' => 'ama', 'MSTRG.18632' => 'ama', 'MSTRG.7203' => 'ama', 'Nitab4.5_0000533g0140' => 'nta', 'Nitab4.5_0000888g0150' => 'nta', 'Nitab4.5_0001453g0040' => 'nta', 'Nitab4.5_0002827g0090' => 'nta', 'Nitab4.5_0003082g0040' => 'nta', 'Nitab4.5_0007799g0040' => 'nta', 'Nitab4.5_0008983g0010' => 'nta', 'Nitab4.5_0009017g0020' => 'nta', 'Nn1g02132' => 'nnu', 'Nn1g03492' => 'nnu', 'Nn1g03493' => 'nnu', 'Nn1g03494' => 'nnu', 'Nn1g07164' => 'nnu', 'Nn1g07291' => 'nnu', 'Nn2g10655' => 'nnu', 'Nn2g11652' => 'nnu', 'Nn2g14008' => 'nnu', 'Nn3g17476' => 'nnu', 'Nn3g17477' => 'nnu', 'Nn4g22370' => 'nnu', 'Nn4g25255' => 'nnu', 'Nn5g27755' => 'nnu', 'Nn6g34260' => 'nnu', 'Nn6g35041' => 'nnu', 'Oeu005924.1' => 'oeu', 'Oeu008383.1' => 'oeu', 'Oeu014928.1' => 'oeu', 'Oeu019889.1' => 'oeu', 'Oeu022271.1' => 'oeu', 'Oeu025271.1' => 'oeu', 'Oeu036302.1' => 'oeu', 'Oeu044100.1' => 'oeu', 'Os01g0528300' => 'osa', 'Os03g0286200' => 'osa', 'Os04g0406600' => 'osa', 'Os07g0512000' => 'osa', 'Os07g0694600' => 'osa', 'Os08g0411000' => 'osa', 'Os09g0565700' => 'osa', 'Os09g0566050' => 'osa', 'Os10g0523700' => 'osa', 'Peaxi162Scf00002g00514' => 'pax', 'Peaxi162Scf00047g01817' => 'pax', 'Peaxi162Scf00114g00001' => 'pax', 'Peaxi162Scf00147g00613' => 'pax', 'Peaxi162Scf00389g00425' => 'pax', 'PGR042G1139' => 'pgr', 'PGR042G3273' => 'pgr', 'PGR102G2180' => 'pgr', 'PGR119G0234' => 'pgr', 'PGR119G0668' => 'pgr', 'PGSC0003DMG400007122' => 'stu', 'PGSC0003DMG400016478' => 'stu', 'PGSC0003DMG400025374' => 'stu', 'PGSC0003DMG400026536' => 'stu', 'Phvul.003G079600' => 'pvu', 'Phvul.005G115600' => 'pvu', 'Phvul.005G127100' => 'pvu', 'Phvul.006G149500' => 'pvu', 'Phvul.006G149600' => 'pvu', 'Phvul.011G071800' => 'pvu', 'Phvul.011G090400' => 'pvu', 'Potri.004G013400' => 'ptr', 'Potri.004G188100' => 'ptr', 'Potri.008G195500' => 'ptr', 'Potri.009G148800' => 'ptr', 'Potri.011G004700' => 'ptr', 'Pp3c17_22810' => 'ppa', 'Pp3c18_4480' => 'ppa', 'Pp3c19_13030' => 'ppa', 'Pp3c1_33620' => 'ppa', 'Pp3c2_9380' => 'ppa', 'PRCOL_00001023' => 'pco', 'Prupe.3G216300' => 'ppe', 'Prupe.4G019500' => 'ppe', 'Prupe.6G092500' => 'ppe', 'Prupe.6G119200' => 'ppe', 'Psat0s1945g0080' => 'psa', 'Psat0s4167g0040' => 'psa', 'Psat1g185800' => 'psa', 'Psat4g006440' => 'psa', 'Psat4g006480' => 'psa', 'Psat4g168120' => 'psa', 'Psat5g255680' => 'psa', 'Psat5g261760' => 'psa', 'Psat7g222120' => 'psa', 'PSO063G7252' => 'pso', 'PSO170G4778' => 'pso', 'PSO210G2249' => 'pso', 'PSO339G2411' => 'pso', 'PSO339G2457' => 'pso', 'PSO339G2854' => 'pso', 'PSO339G4288' => 'pso', 'PSO339G4615' => 'pso', 'PSO384G2796' => 'pso', 'PSO384G2940' => 'pso', 'PSO384G4227' => 'pso', 'PSO478G1425' => 'pso', 'PSO541G3863' => 'pso', 'PSO675G0507' => 'pso', 'PSO782G0338' => 'pso', 'PSO832G0644' => 'pso', 'QL01p013664' => 'qlo', 'QL01p036598' => 'qlo', 'QL05p072984' => 'qlo', 'QL08p005768' => 'qlo', 'QL08p032743' => 'qlo', 'QL93p0073_0439' => 'qlo', 'QL93p0073_0444' => 'qlo', 'RcHm_v2.0_Chr5g0002851' => 'rch', 'RcHm_v2.0_Chr5g0055201' => 'rch', 'RcHm_v2.0_Chr5g0061191' => 'rch', 'RcHm_v2.0_Chr7g0203231' => 'rch', 'Rhsim01G0208100' => 'rsi', 'Rhsim01G0208200' => 'rsi', 'Rhsim02G0106500' => 'rsi', 'Rhsim03G0107900' => 'rsi', 'Rhsim06G0163400' => 'rsi', 'Rhsim13G0105200' => 'rsi', 'Sabra04G0006300' => 'sbr', 'Sabra04G0127000' => 'sbr', 'Sabra08G0148700' => 'sbr', 'Sabra09G0117400' => 'sbr', 'SalBow1G3326' => 'sbo', 'SalBow3G3228' => 'sbo', 'SalBow6G1634' => 'sbo', 'SalBow6G3603' => 'sbo', 'SalBow6G5266' => 'sbo', 'SalBow7G2265' => 'sbo', 'SalBow8G0850' => 'sbo', 'SalBow8G2592' => 'sbo', 'Sc05g0009240' => 'sci', 'Sc12g0002300' => 'sci', 'Sc21g0000100' => 'sci', 'Sc21g0004720' => 'sci', 'Sed0002949' => 'sed', 'Sed0004114' => 'sed', 'Sed0004306' => 'sed', 'Sed0006172' => 'sed', 'Sed0008413' => 'sed', 'Sed0013809' => 'sed', 'Sed0019556' => 'sed', 'SEGI_03570' => 'sgi', 'SEGI_07859' => 'sgi', 'SEGI_15042' => 'sgi', 'SEGI_16263' => 'sgi', 'SEGI_16552' => 'sgi', 'SEGI_24331' => 'sgi', 'SEGI_27316' => 'sgi', 'SEGI_29521' => 'sgi', 'SEGI_41342' => 'sgi', 'SGA_v2.0_scaffold27G11617' => 'sas', 'SGA_v2.0_scaffold316G48428' => 'sas', 'SGA_v2.0_scaffold49G18261' => 'sas', 'SGA_v2.0_scaffold7G03831' => 'sas', 'SGA_v2.0_scaffold93G28359' => 'sas', 'SHI02210' => 'shi', 'SHI06028' => 'shi', 'SHI06321' => 'shi', 'SMO111G0012' => 'smo', 'SMO228G0080' => 'smo', 'SMO356G0756' => 'smo', 'Solyc02g080620.3' => 'sly', 'Solyc06g074530.1' => 'sly', 'Solyc11g066890.1' => 'sly', 'Solyc11g072520.3' => 'sly', 'Sopen02g025330' => 'spe', 'Sopen06g031000' => 'spe', 'Sopen09g008240' => 'spe', 'Sopen09g025210' => 'spe', 'Sopen11g026600' => 'spe', 'Sopen11g030170' => 'spe', 'Sp1g10420' => 'spa', 'Sp3g06570' => 'spa', 'Sp4g10660' => 'spa', 'Sp5g16460' => 'spa', 'Sp6g22710' => 'spa', 'TAR365G0112' => 'tar', 'TAR369G0717' => 'tar', 'TAR374G0976' => 'tar', 'TAR623G1128' => 'tar', 'TAR626G1937' => 'tar', 'TAR627G0123' => 'tar', 'TAR628G0305' => 'tar', 'TAR636G1176' => 'tar', 'TAR636G2442' => 'tar', 'THA.LOC104800556' => 'tha', 'THA.LOC104809501' => 'tha', 'THA.LOC104815126' => 'tha', 'THA.LOC104815732' => 'tha', 'THA.LOC104823528' => 'tha', 'Thecc.02G365600' => 'tca', 'Thecc.06G222300' => 'tca', 'Thecc.09G261800' => 'tca', 'Thecc.09G291400' => 'tca', 'Thhalv10003028m.g' => 'esa', 'Thhalv10007886m.g' => 'esa', 'Thhalv10016085m.g' => 'esa', 'Thhalv10016681m.g' => 'esa', 'Thhalv10020951m.g' => 'esa', 'TPR.G15598' => 'tpr', 'TPR.G29305' => 'tpr', 'TPR.G32395' => 'tpr', 'TPR.G36998' => 'tpr', 'TPR.G4227' => 'tpr', 'TWI18G1433' => 'twi', 'TWI31G0755' => 'twi', 'TWI38G0912' => 'twi', 'TWI75G1097' => 'twi', 'TWI75G1619' => 'twi', 'TWI79G1336' => 'twi', 'unitig_0.g943' => 'ugi', 'unitig_0.g944' => 'ugi', 'unitig_22.g6646' => 'ugi', 'unitig_37.g12681' => 'ugi', 'unitig_8.g3290' => 'ugi', 'vmacro03278' => 'vma', 'vmacro12197' => 'vma', 'vmacro14478' => 'vma', 'vmacro15787' => 'vma', 'vmacro15789' => 'vma', 'vmacro15790' => 'vma', 'vmacro15806' => 'vma', 'vmacro22907' => 'vma', 'vmacro22908' => 'vma', 'vmacro22909' => 'vma', 'vmacro23108' => 'vma', 'VMungo0540G0540' => 'vmu', 'VMungo0540G2468' => 'vmu', 'VMungo1080G0390' => 'vmu', 'VMungo1080G1165' => 'vmu', 'VMungo1127G0170' => 'vmu', 'VMungo1127G2099' => 'vmu', 'VMungo1215G3013' => 'vmu', 'Zm00001eb013110' => 'zma', 'Zm00001eb084260' => 'zma', 'Zm00001eb096110' => 'zma', 'Zm00001eb217510' => 'zma', 'Zm00001eb322550' => 'zma', 'Zm00001eb390770' => 'zma', 'Zm00001eb397170' => 'zma', 'Zm00001eb404610' => 'zma', 'Zm00001eb421790' => 'zma' ), 'gf_id' => 'HOM05D000911', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000911' ), 'data_identifier' => 'HOM05D000911', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000911', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27780' => 'bna', 'A03p35380' => 'bna', 'A04p21160' => 'bna', 'A05p40570' => 'bna', 'A06p26900' => 'bna', 'A08p33230' => 'bna', 'A09p65960' => 'bna', 'A10p18290' => 'bna', 'Aa31LG1G12990' => 'aar', 'Aa31LG1G2980' => 'aar', 'Aa31LG4G14320' => 'aar', 'Aa31LG7G11800' => 'aar', 'Aa31sc36G50' => 'aar', 'Aa31sc36G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3721' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5459' => 'aag', 'Actinidia03028' => 'ach', 'Actinidia03753' => 'ach', 'Actinidia04187' => 'ach', 'Actinidia05509' => 'ach', 'Actinidia24180' => 'ach', 'Actinidia26906' => 'ach', 'Actinidia37097' => 'ach', 'Actinidia38249' => 'ach', 'Ah.01g003470' => 'amhyb', 'Ah.01g004580' => 'amhyb', 'Ah.01g014850' => 'amhyb', 'Ah.01g016830' => 'amhyb', 'Ah.14g088000' => 'amhyb', 'AL1G22980' => 'aly', 'AL3G18990' => 'aly', 'AL4G22440' => 'aly', 'AL4G33180' => 'aly', 'AL5G22920' => 'aly', 'AL6G33660' => 'aly', 'AL8G20720' => 'aly', 'Aqoxy1G00935' => 'aox', 'Aqoxy1G02094' => 'aox', 'Aqoxy2G01239' => 'aox', 'Aqoxy4G01870' => 'aox', 'Aqoxy7G00450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.36ZVTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71EM27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5D6C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH3WRE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3NCM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RIM768' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YB5YRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z36GDV' => 'arhy', 'AT1G08250' => 'ath', 'AT1G11790' => 'ath', 'AT2G27820' => 'ath', 'AT3G07630' => 'ath', 'AT3G44720' => 'ath', 'AT5G22630' => 'ath', 'ATR0693G304' => 'atr', 'ATR0794G109' => 'atr', 'ATR0820G120' => 'atr', 'ATR1159G064' => 'atr', 'Atru.chr10.2239' => 'acertr', 'Atru.chr3.3371' => 'acertr', 'Atru.chr6.3202' => 'acertr', 'AUR62006499' => 'cqu', 'AUR62012718' => 'cqu', 'AUR62021938' => 'cqu', 'AUR62023932' => 'cqu', 'AUR62025034' => 'cqu', 'AUR62025035' => 'cqu', 'AUR62038307' => 'cqu', 'AUR62043466' => 'cqu', 'BcaB02g10748' => 'bca', 'BcaB03g13231' => 'bca', 'BcaB03g14689' => 'bca', 'BcaB05g22716' => 'bca', 'BcaB06g28172' => 'bca', 'BcaB08g36413' => 'bca', 'BcaC01g02186' => 'bca', 'BcaC01g04272' => 'bca', 'BcaC02g08080' => 'bca', 'BcaC02g08227' => 'bca', 'BcaC03g13901' => 'bca', 'BcaC04g19593' => 'bca', 'BcaC04g20874' => 'bca', 'BcaC05g29557' => 'bca', 'BcaC06g35505' => 'bca', 'BcaC07g41954' => 'bca', 'BcaC07g41955' => 'bca', 'BcaC07g41956' => 'bca', 'BcaC07g42519' => 'bca', 'BcaC07g42520' => 'bca', 'BcaC07g42523' => 'bca', 'BcaC07g42524' => 'bca', 'BcaC07g42525' => 'bca', 'BcaC08g47480' => 'bca', 'BcaC08g47481' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00530' => 'bna', 'BolC2t07178H' => 'bol', 'BolC3t16567H' => 'bol', 'BolC4t27234H' => 'bol', 'BolC5t29728H' => 'bol', 'BolC5t34622H' => 'bol', 'BolC6t40321H' => 'bol', 'BolC7t42028H' => 'bol', 'BolC8t49125H' => 'bol', 'BolC8t52538H' => 'bol', 'BolC8t52539H' => 'bol', 'BolC9t56681H' => 'bol', 'BolC9t58266H' => 'bol', 'BolSC21t60294H' => 'bol', 'BraA02t05670Z' => 'bra', 'BraA03t12716Z' => 'bra', 'BraA04t17685Z' => 'bra', 'BraA05t22788Z' => 'bra', 'BraA06t24032Z' => 'bra', 'BraA06t25625Z' => 'bra', 'BraA07t27930Z' => 'bra', 'BraA08t35242Z' => 'bra', 'BraA09t38609Z' => 'bra', 'BraA10t43905Z' => 'bra', 'C02p11060' => 'bna', 'C03p42990' => 'bna', 'C03p67310' => 'bna', 'C04p56990' => 'bna', 'C04p58660' => 'bna', 'C05p09890' => 'bna', 'C05p59680' => 'bna', 'C06p19830' => 'bna', 'C06p53040' => 'bna', 'C07p15230' => 'bna', 'C08p50070' => 'bna', 'C08p50090' => 'bna', 'C09p38330' => 'bna', 'C09p53940' => 'bna', 'CAN.G1014.1' => 'can', 'CAN.G644.30' => 'can', 'CAN.G84.47' => 'can', 'CAN.G919.8' => 'can', 'CANSAT54G0113' => 'cansat', 'CANSAT54G1286' => 'cansat', 'CANSAT64G1020' => 'cansat', 'CARHR008080' => 'chi', 'CARHR008090' => 'chi', 'CARHR012130' => 'chi', 'CARHR038390' => 'chi', 'CARHR082330' => 'chi', 'CARHR120520' => 'chi', 'CARHR151470' => 'chi', 'CARHR190950' => 'chi', 'Carub.0001s0760' => 'cru', 'Carub.0001s1146' => 'cru', 'Carub.0003s0721' => 'cru', 'Carub.0004s0858' => 'cru', 'Carub.0005s1040' => 'cru', 'Carub.0006s2035' => 'cru', 'Carub.0015s0005' => 'cru', 'Ca_01607_v3' => 'car', 'Ca_01677_v3' => 'car', 'Ca_06087_v3' => 'car', 'Ca_19238_v3' => 'car', 'Ca_19373_v3' => 'car', 'Ca_21079_v3' => 'car', 'CBR_g54016' => 'cbr', 'CBR_g54018' => 'cbr', 'CBR_g54020' => 'cbr', 'Cc01_g09780' => 'ccan', 'Cc01_g11680' => 'ccan', 'Cc02_g15610' => 'ccan', 'Cc05_g04350' => 'ccan', 'Cc09_g01580' => 'ccan', 'CDE01G0795' => 'cde', 'CDE02G2024' => 'cde', 'CDE02G2260' => 'cde', 'CDE02G4561' => 'cde', 'CDE05G2733' => 'cde', 'CDE05G3422' => 'cde', 'CDE06G2003' => 'cde', 'CDE08G0576' => 'cde', 'CDE09G0048' => 'cde', 'CDE11G0805' => 'cde', 'Cfa003644' => 'cfa', 'Cfa006290' => 'cfa', 'Cfa010080' => 'cfa', 'Cfa011376' => 'cfa', 'Cfa011576' => 'cfa', 'Cfa011577' => 'cfa', 'Cfa014389' => 'cfa', 'Ciclev10006044m.g' => 'ccl', 'Ciclev10006954m.g' => 'ccl', 'Ciclev10015131m.g' => 'ccl', 'Ciclev10015580m.g' => 'ccl', 'Ciclev10028359m.g' => 'ccl', 'Ciclev10028573m.g' => 'ccl', 'CiPaw.03G159300' => 'cil', 'CiPaw.04G115100' => 'cil', 'CiPaw.09G092800' => 'cil', 'CiPaw.10G071800' => 'cil', 'CiPaw.13G105800' => 'cil', 'CiPaw.13G141000' => 'cil', 'CiPaw.14G103400' => 'cil', 'ClCG01G012700' => 'cla', 'ClCG01G012720' => 'cla', 'ClCG01G021920' => 'cla', 'ClCG02G008870' => 'cla', 'ClCG02G020840' => 'cla', 'ClCG02G021930' => 'cla', 'COL.COLO4_19302' => 'col', 'COL.COLO4_25262' => 'col', 'COL.COLO4_31788' => 'col', 'Cpa.g.c34684' => 'cpa', 'Cpa.g.c36520.1' => 'cpa', 'Cpa.g.c45626' => 'cpa', 'Cpa.g.sc121.17' => 'cpa', 'Cpa.g.sc13.22' => 'cpa', 'Cpa.g.sc87.88' => 'cpa', 'Cre06.g261800' => 'cre', 'CsaV3_1G014500' => 'csa', 'CsaV3_1G014510' => 'csa', 'CsaV3_2G034880' => 'csa', 'CsaV3_6G014760' => 'csa', 'CsaV3_6G021500' => 'csa', 'CsaV3_6G048980' => 'csa', 'CSS0002511' => 'camsi', 'CSS0007556' => 'camsi', 'CSS0008532' => 'camsi', 'CSS0009709' => 'camsi', 'CSS0010486' => 'camsi', 'CSS0016768' => 'camsi', 'CSS0023512' => 'camsi', 'CSS0025341' => 'camsi', 'CSS0027999' => 'camsi', 'CSS0028944' => 'camsi', 'CSS0032292' => 'camsi', 'CSS0032464' => 'camsi', 'CSS0037153' => 'camsi', 'CSS0039256' => 'camsi', 'CSS0048392' => 'camsi', 'CSS0050458' => 'camsi', 'DCAR_004224' => 'dca', 'DCAR_006147' => 'dca', 'DCAR_006465' => 'dca', 'DCAR_008159' => 'dca', 'DCAR_012164' => 'dca', 'DCAR_019764' => 'dca', 'Dinv05418' => 'din', 'Dinv10839' => 'din', 'Dinv12521' => 'din', 'Dinv13900' => 'din', 'Dinv29426' => 'din', 'Duzib150G0263' => 'dzi', 'Duzib168G1178' => 'dzi', 'Duzib168G1924' => 'dzi', 'Duzib170G0299' => 'dzi', 'Duzib170G0813' => 'dzi', 'Duzib235G1128' => 'dzi', 'Duzib248G1060' => 'dzi', 'ECA232G1910' => 'eca', 'ECA233G4621' => 'eca', 'ECA238G1216' => 'eca', 'ECA238G1784' => 'eca', 'ECA248G1242' => 'eca', 'EL10Ac8g20071' => 'bvu', 'EL10Ac9g21086' => 'bvu', 'EL10Ac9g22407' => 'bvu', 'EL10Ac9g22412' => 'bvu', 'Eucgr.A01119' => 'egr', 'Eucgr.E04043' => 'egr', 'Eucgr.J00428' => 'egr', 'Eucgr.J00958' => 'egr', 'FAN11G3091' => 'fan', 'FAN11G3651' => 'fan', 'FAN16G2566' => 'fan', 'FAN21G3155' => 'fan', 'FAN21G3400' => 'fan', 'FAN21G3543' => 'fan', 'FAN25G0234' => 'fan', 'FAN25G1422' => 'fan', 'FAN25G3392' => 'fan', 'FvH4_3g01940' => 'fve', 'FvH4_3g29870' => 'fve', 'FvH4_3g33680' => 'fve', 'Glyma.09G004200' => 'gma', 'Glyma.11G151288' => 'gma', 'Glyma.11G189100' => 'gma', 'Glyma.12G072500' => 'gma', 'Glyma.12G085500' => 'gma', 'Glyma.12G181800' => 'gma', 'Glyma.12G193000' => 'gma', 'Glyma.13G309300' => 'gma', 'Glyma.13G319000' => 'gma', 'Glyma.17G012600' => 'gma', 'Gohir.A06G148600' => 'ghi', 'Gohir.A07G115800' => 'ghi', 'Gohir.A08G003600' => 'ghi', 'Gohir.A09G093300' => 'ghi', 'Gohir.A09G105400' => 'ghi', 'Gohir.A09G105500' => 'ghi', 'Gohir.D06G154600' => 'ghi', 'Gohir.D07G120200' => 'ghi', 'Gohir.D08G013900' => 'ghi', 'Gohir.D09G093100' => 'ghi', 'Gohir.D09G102200' => 'ghi', 'Gohir.D09G102300' => 'ghi', 'Gorai.001G129400' => 'gra', 'Gorai.004G008200' => 'gra', 'Gorai.006G109800' => 'gra', 'Gorai.006G119500' => 'gra', 'Gorai.006G121300' => 'gra', 'Gorai.010G180700' => 'gra', 'GSVIVG01012716001' => 'vvi', 'GSVIVG01025118001' => 'vvi', 'GSVIVG01030439001' => 'vvi', 'GSVIVG01031397001' => 'vvi', 'HanXRQChr01g0004201' => 'han', 'HanXRQChr02g0054941' => 'han', 'HanXRQChr05g0141811' => 'han', 'HanXRQChr07g0197751' => 'han', 'HanXRQChr11g0346691' => 'han', 'HanXRQChr13g0396971' => 'han', 'HanXRQChr14g0432951' => 'han', 'HanXRQChr14g0452001' => 'han', 'HanXRQChr15g0496681' => 'han', 'HanXRQChr17g0557491' => 'han', 'HanXRQChr17g0557501' => 'han', 'Haze_06809' => 'cav', 'Haze_12852' => 'cav', 'Haze_15850' => 'cav', 'Haze_23446' => 'cav', 'Haze_23942' => 'cav', 'Haze_23943' => 'cav', 'Hma1.2p1_0091F.1_g046450' => 'hma', 'Hma1.2p1_0128F.1_g059910' => 'hma', 'Hma1.2p1_0249F.1_g102260' => 'hma', 'Hma1.2p1_0453F.1_g156190' => 'hma', 'Hma1.2p1_0695F.1_g204380' => 'hma', 'Hma1.2p1_0749F.1_g212650' => 'hma', 'Hma1.2p1_2156F.1_g315420' => 'hma', 'Hma1.2p1_2686F.1_g326940' => 'hma', 'HPP92_006428' => 'vpl', 'HPP92_012069' => 'vpl', 'HPP92_014129' => 'vpl', 'HPP92_014133' => 'vpl', 'HPP92_017315' => 'vpl', 'HPP92_026445' => 'vpl', 'HPP92_026446' => 'vpl', 'Hund00774' => 'sun', 'Hund07682' => 'sun', 'Hund21413' => 'sun', 'Hund23462' => 'sun', 'Hund23463' => 'sun', 'Lalb_Chr03g0027911' => 'lal', 'Lalb_Chr13g0304271' => 'lal', 'Lalb_Chr19g0137471' => 'lal', 'Lalb_Chr22g0350651' => 'lal', 'Lalb_Chr24g0395151' => 'lal', 'Lj1A1231T40' => 'lonja', 'Lj1A221T48' => 'lonja', 'Lj1C924T12' => 'lonja', 'Lj2C993G6' => 'lonja', 'Lj3g0005790' => 'lja', 'Lj3g0015432' => 'lja', 'Lj3g0017722' => 'lja', 'Lj3g0018497' => 'lja', 'Lj4g0025071' => 'lja', 'Lsat_1_v5_gn_1_129680' => 'lsa', 'Lsat_1_v5_gn_2_25321' => 'lsa', 'Lsat_1_v5_gn_2_95461' => 'lsa', 'Lsat_1_v5_gn_4_159620' => 'lsa', 'Lsat_1_v5_gn_6_41301' => 'lsa', 'Lsat_1_v5_gn_6_74660' => 'lsa', 'Lsat_1_v5_gn_7_11520' => 'lsa', 'Lsat_1_v5_gn_9_67680' => 'lsa', 'Manes.04G008300' => 'mes', 'Manes.04G008400' => 'mes', 'Manes.04G026500' => 'mes', 'Manes.10G135300' => 'mes', 'Manes.11G157300' => 'mes', 'Manes.12G074000' => 'mes', 'Manes.16G006200' => 'mes', 'Manes.17G026400' => 'mes', 'Mapoly0024s0086' => 'mpo', 'Mapoly0024s0087' => 'mpo', 'Mapoly0071s0057' => 'mpo', 'Mapoly0204s0012' => 'mpo', 'MBI04_g37681_MAGBIO' => 'mbi', 'MBI05_g17779_MAGBIO' => 'mbi', 'MBI12_g31184_MAGBIO' => 'mbi', 'MBI17_g11083_MAGBIO' => 'mbi', 'MBI18_g03883_MAGBIO' => 'mbi', 'MBI18_g28940_MAGBIO' => 'mbi', 'MCO01G690' => 'mco', 'MD03G1109900' => 'mdo', 'MD03G1134800' => 'mdo', 'MD05G1348000' => 'mdo', 'MD10G1322400' => 'mdo', 'MD11G1123300' => 'mdo', 'MD11G1157600' => 'mdo', 'Medtr2g084875' => 'mtr', 'Medtr2g088130' => 'mtr', 'Medtr4g055310' => 'mtr', 'Medtr4g061070' => 'mtr', 'Medtr4g132250' => 'mtr', 'MELO3C004795.2' => 'cme', 'MELO3C004797.2' => 'cme', 'MELO3C007396.2' => 'cme', 'MELO3C019277.2' => 'cme', 'MELO3C021449.2' => 'cme', 'MELO3C025736.2' => 'cme', 'Migut.D02175' => 'egut', 'Migut.H01573' => 'egut', 'Migut.M01327' => 'egut', 'Migut.N02513' => 'egut', 'MSTRG.14638' => 'ama', 'MSTRG.18632' => 'ama', 'MSTRG.7203' => 'ama', 'Nitab4.5_0000533g0140' => 'nta', 'Nitab4.5_0000888g0150' => 'nta', 'Nitab4.5_0001453g0040' => 'nta', 'Nitab4.5_0002827g0090' => 'nta', 'Nitab4.5_0003082g0040' => 'nta', 'Nitab4.5_0007799g0040' => 'nta', 'Nitab4.5_0008983g0010' => 'nta', 'Nitab4.5_0009017g0020' => 'nta', 'Nn1g02132' => 'nnu', 'Nn1g03492' => 'nnu', 'Nn1g03493' => 'nnu', 'Nn1g03494' => 'nnu', 'Nn1g07164' => 'nnu', 'Nn1g07291' => 'nnu', 'Nn2g10655' => 'nnu', 'Nn2g11652' => 'nnu', 'Nn2g14008' => 'nnu', 'Nn3g17476' => 'nnu', 'Nn3g17477' => 'nnu', 'Nn4g22370' => 'nnu', 'Nn4g25255' => 'nnu', 'Nn5g27755' => 'nnu', 'Nn6g34260' => 'nnu', 'Nn6g35041' => 'nnu', 'Oeu005924.1' => 'oeu', 'Oeu008383.1' => 'oeu', 'Oeu014928.1' => 'oeu', 'Oeu019889.1' => 'oeu', 'Oeu022271.1' => 'oeu', 'Oeu025271.1' => 'oeu', 'Oeu036302.1' => 'oeu', 'Oeu044100.1' => 'oeu', 'Os01g0528300' => 'osa', 'Os03g0286200' => 'osa', 'Os04g0406600' => 'osa', 'Os07g0512000' => 'osa', 'Os07g0694600' => 'osa', 'Os08g0411000' => 'osa', 'Os09g0565700' => 'osa', 'Os09g0566050' => 'osa', 'Os10g0523700' => 'osa', 'Peaxi162Scf00002g00514' => 'pax', 'Peaxi162Scf00047g01817' => 'pax', 'Peaxi162Scf00114g00001' => 'pax', 'Peaxi162Scf00147g00613' => 'pax', 'Peaxi162Scf00389g00425' => 'pax', 'PGR042G1139' => 'pgr', 'PGR042G3273' => 'pgr', 'PGR102G2180' => 'pgr', 'PGR119G0234' => 'pgr', 'PGR119G0668' => 'pgr', 'PGSC0003DMG400007122' => 'stu', 'PGSC0003DMG400016478' => 'stu', 'PGSC0003DMG400025374' => 'stu', 'PGSC0003DMG400026536' => 'stu', 'Phvul.003G079600' => 'pvu', 'Phvul.005G115600' => 'pvu', 'Phvul.005G127100' => 'pvu', 'Phvul.006G149500' => 'pvu', 'Phvul.006G149600' => 'pvu', 'Phvul.011G071800' => 'pvu', 'Phvul.011G090400' => 'pvu', 'Potri.004G013400' => 'ptr', 'Potri.004G188100' => 'ptr', 'Potri.008G195500' => 'ptr', 'Potri.009G148800' => 'ptr', 'Potri.011G004700' => 'ptr', 'Pp3c17_22810' => 'ppa', 'Pp3c18_4480' => 'ppa', 'Pp3c19_13030' => 'ppa', 'Pp3c1_33620' => 'ppa', 'Pp3c2_9380' => 'ppa', 'PRCOL_00001023' => 'pco', 'Prupe.3G216300' => 'ppe', 'Prupe.4G019500' => 'ppe', 'Prupe.6G092500' => 'ppe', 'Prupe.6G119200' => 'ppe', 'Psat0s1945g0080' => 'psa', 'Psat0s4167g0040' => 'psa', 'Psat1g185800' => 'psa', 'Psat4g006440' => 'psa', 'Psat4g006480' => 'psa', 'Psat4g168120' => 'psa', 'Psat5g255680' => 'psa', 'Psat5g261760' => 'psa', 'Psat7g222120' => 'psa', 'PSO063G7252' => 'pso', 'PSO170G4778' => 'pso', 'PSO210G2249' => 'pso', 'PSO339G2411' => 'pso', 'PSO339G2457' => 'pso', 'PSO339G2854' => 'pso', 'PSO339G4288' => 'pso', 'PSO339G4615' => 'pso', 'PSO384G2796' => 'pso', 'PSO384G2940' => 'pso', 'PSO384G4227' => 'pso', 'PSO478G1425' => 'pso', 'PSO541G3863' => 'pso', 'PSO675G0507' => 'pso', 'PSO782G0338' => 'pso', 'PSO832G0644' => 'pso', 'QL01p013664' => 'qlo', 'QL01p036598' => 'qlo', 'QL05p072984' => 'qlo', 'QL08p005768' => 'qlo', 'QL08p032743' => 'qlo', 'QL93p0073_0439' => 'qlo', 'QL93p0073_0444' => 'qlo', 'RcHm_v2.0_Chr5g0002851' => 'rch', 'RcHm_v2.0_Chr5g0055201' => 'rch', 'RcHm_v2.0_Chr5g0061191' => 'rch', 'RcHm_v2.0_Chr7g0203231' => 'rch', 'Rhsim01G0208100' => 'rsi', 'Rhsim01G0208200' => 'rsi', 'Rhsim02G0106500' => 'rsi', 'Rhsim03G0107900' => 'rsi', 'Rhsim06G0163400' => 'rsi', 'Rhsim13G0105200' => 'rsi', 'Sabra04G0006300' => 'sbr', 'Sabra04G0127000' => 'sbr', 'Sabra08G0148700' => 'sbr', 'Sabra09G0117400' => 'sbr', 'SalBow1G3326' => 'sbo', 'SalBow3G3228' => 'sbo', 'SalBow6G1634' => 'sbo', 'SalBow6G3603' => 'sbo', 'SalBow6G5266' => 'sbo', 'SalBow7G2265' => 'sbo', 'SalBow8G0850' => 'sbo', 'SalBow8G2592' => 'sbo', 'Sc05g0009240' => 'sci', 'Sc12g0002300' => 'sci', 'Sc21g0000100' => 'sci', 'Sc21g0004720' => 'sci', 'Sed0002949' => 'sed', 'Sed0004114' => 'sed', 'Sed0004306' => 'sed', 'Sed0006172' => 'sed', 'Sed0008413' => 'sed', 'Sed0013809' => 'sed', 'Sed0019556' => 'sed', 'SEGI_03570' => 'sgi', 'SEGI_07859' => 'sgi', 'SEGI_15042' => 'sgi', 'SEGI_16263' => 'sgi', 'SEGI_16552' => 'sgi', 'SEGI_24331' => 'sgi', 'SEGI_27316' => 'sgi', 'SEGI_29521' => 'sgi', 'SEGI_41342' => 'sgi', 'SGA_v2.0_scaffold27G11617' => 'sas', 'SGA_v2.0_scaffold316G48428' => 'sas', 'SGA_v2.0_scaffold49G18261' => 'sas', 'SGA_v2.0_scaffold7G03831' => 'sas', 'SGA_v2.0_scaffold93G28359' => 'sas', 'SHI02210' => 'shi', 'SHI06028' => 'shi', 'SHI06321' => 'shi', 'SMO111G0012' => 'smo', 'SMO228G0080' => 'smo', 'SMO356G0756' => 'smo', 'Solyc02g080620.3' => 'sly', 'Solyc06g074530.1' => 'sly', 'Solyc11g066890.1' => 'sly', 'Solyc11g072520.3' => 'sly', 'Sopen02g025330' => 'spe', 'Sopen06g031000' => 'spe', 'Sopen09g008240' => 'spe', 'Sopen09g025210' => 'spe', 'Sopen11g026600' => 'spe', 'Sopen11g030170' => 'spe', 'Sp1g10420' => 'spa', 'Sp3g06570' => 'spa', 'Sp4g10660' => 'spa', 'Sp5g16460' => 'spa', 'Sp6g22710' => 'spa', 'TAR365G0112' => 'tar', 'TAR369G0717' => 'tar', 'TAR374G0976' => 'tar', 'TAR623G1128' => 'tar', 'TAR626G1937' => 'tar', 'TAR627G0123' => 'tar', 'TAR628G0305' => 'tar', 'TAR636G1176' => 'tar', 'TAR636G2442' => 'tar', 'THA.LOC104800556' => 'tha', 'THA.LOC104809501' => 'tha', 'THA.LOC104815126' => 'tha', 'THA.LOC104815732' => 'tha', 'THA.LOC104823528' => 'tha', 'Thecc.02G365600' => 'tca', 'Thecc.06G222300' => 'tca', 'Thecc.09G261800' => 'tca', 'Thecc.09G291400' => 'tca', 'Thhalv10003028m.g' => 'esa', 'Thhalv10007886m.g' => 'esa', 'Thhalv10016085m.g' => 'esa', 'Thhalv10016681m.g' => 'esa', 'Thhalv10020951m.g' => 'esa', 'TPR.G15598' => 'tpr', 'TPR.G29305' => 'tpr', 'TPR.G32395' => 'tpr', 'TPR.G36998' => 'tpr', 'TPR.G4227' => 'tpr', 'TWI18G1433' => 'twi', 'TWI31G0755' => 'twi', 'TWI38G0912' => 'twi', 'TWI75G1097' => 'twi', 'TWI75G1619' => 'twi', 'TWI79G1336' => 'twi', 'unitig_0.g943' => 'ugi', 'unitig_0.g944' => 'ugi', 'unitig_22.g6646' => 'ugi', 'unitig_37.g12681' => 'ugi', 'unitig_8.g3290' => 'ugi', 'vmacro03278' => 'vma', 'vmacro12197' => 'vma', 'vmacro14478' => 'vma', 'vmacro15787' => 'vma', 'vmacro15789' => 'vma', 'vmacro15790' => 'vma', 'vmacro15806' => 'vma', 'vmacro22907' => 'vma', 'vmacro22908' => 'vma', 'vmacro22909' => 'vma', 'vmacro23108' => 'vma', 'VMungo0540G0540' => 'vmu', 'VMungo0540G2468' => 'vmu', 'VMungo1080G0390' => 'vmu', 'VMungo1080G1165' => 'vmu', 'VMungo1127G0170' => 'vmu', 'VMungo1127G2099' => 'vmu', 'VMungo1215G3013' => 'vmu', 'Zm00001eb013110' => 'zma', 'Zm00001eb084260' => 'zma', 'Zm00001eb096110' => 'zma', 'Zm00001eb217510' => 'zma', 'Zm00001eb322550' => 'zma', 'Zm00001eb390770' => 'zma', 'Zm00001eb397170' => 'zma', 'Zm00001eb404610' => 'zma', 'Zm00001eb421790' => 'zma' ) $gf_id = 'HOM05D000911' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000911' ) $data_identifier = 'HOM05D000911' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 16, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 5, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 6, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 8, 'nnu' => (int) 16, 'oeu' => (int) 8, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 5, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 16, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421790' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000911', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27780' => 'bna', 'A03p35380' => 'bna', 'A04p21160' => 'bna', 'A05p40570' => 'bna', 'A06p26900' => 'bna', 'A08p33230' => 'bna', 'A09p65960' => 'bna', 'A10p18290' => 'bna', 'Aa31LG1G12990' => 'aar', 'Aa31LG1G2980' => 'aar', 'Aa31LG4G14320' => 'aar', 'Aa31LG7G11800' => 'aar', 'Aa31sc36G50' => 'aar', 'Aa31sc36G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3721' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5459' => 'aag', 'Actinidia03028' => 'ach', 'Actinidia03753' => 'ach', 'Actinidia04187' => 'ach', 'Actinidia05509' => 'ach', 'Actinidia24180' => 'ach', 'Actinidia26906' => 'ach', 'Actinidia37097' => 'ach', 'Actinidia38249' => 'ach', 'Ah.01g003470' => 'amhyb', 'Ah.01g004580' => 'amhyb', 'Ah.01g014850' => 'amhyb', 'Ah.01g016830' => 'amhyb', 'Ah.14g088000' => 'amhyb', 'AL1G22980' => 'aly', 'AL3G18990' => 'aly', 'AL4G22440' => 'aly', 'AL4G33180' => 'aly', 'AL5G22920' => 'aly', 'AL6G33660' => 'aly', 'AL8G20720' => 'aly', 'Aqoxy1G00935' => 'aox', 'Aqoxy1G02094' => 'aox', 'Aqoxy2G01239' => 'aox', 'Aqoxy4G01870' => 'aox', 'Aqoxy7G00450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.36ZVTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71EM27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5D6C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH3WRE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3NCM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RIM768' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YB5YRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z36GDV' => 'arhy', 'AT1G08250' => 'ath', 'AT1G11790' => 'ath', 'AT2G27820' => 'ath', 'AT3G07630' => 'ath', 'AT3G44720' => 'ath', 'AT5G22630' => 'ath', 'ATR0693G304' => 'atr', 'ATR0794G109' => 'atr', 'ATR0820G120' => 'atr', 'ATR1159G064' => 'atr', 'Atru.chr10.2239' => 'acertr', 'Atru.chr3.3371' => 'acertr', 'Atru.chr6.3202' => 'acertr', 'AUR62006499' => 'cqu', 'AUR62012718' => 'cqu', 'AUR62021938' => 'cqu', 'AUR62023932' => 'cqu', 'AUR62025034' => 'cqu', 'AUR62025035' => 'cqu', 'AUR62038307' => 'cqu', 'AUR62043466' => 'cqu', 'BcaB02g10748' => 'bca', 'BcaB03g13231' => 'bca', 'BcaB03g14689' => 'bca', 'BcaB05g22716' => 'bca', 'BcaB06g28172' => 'bca', 'BcaB08g36413' => 'bca', 'BcaC01g02186' => 'bca', 'BcaC01g04272' => 'bca', 'BcaC02g08080' => 'bca', 'BcaC02g08227' => 'bca', 'BcaC03g13901' => 'bca', 'BcaC04g19593' => 'bca', 'BcaC04g20874' => 'bca', 'BcaC05g29557' => 'bca', 'BcaC06g35505' => 'bca', 'BcaC07g41954' => 'bca', 'BcaC07g41955' => 'bca', 'BcaC07g41956' => 'bca', 'BcaC07g42519' => 'bca', 'BcaC07g42520' => 'bca', 'BcaC07g42523' => 'bca', 'BcaC07g42524' => 'bca', 'BcaC07g42525' => 'bca', 'BcaC08g47480' => 'bca', 'BcaC08g47481' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00530' => 'bna', 'BolC2t07178H' => 'bol', 'BolC3t16567H' => 'bol', 'BolC4t27234H' => 'bol', 'BolC5t29728H' => 'bol', 'BolC5t34622H' => 'bol', 'BolC6t40321H' => 'bol', 'BolC7t42028H' => 'bol', 'BolC8t49125H' => 'bol', 'BolC8t52538H' => 'bol', 'BolC8t52539H' => 'bol', 'BolC9t56681H' => 'bol', 'BolC9t58266H' => 'bol', 'BolSC21t60294H' => 'bol', 'BraA02t05670Z' => 'bra', 'BraA03t12716Z' => 'bra', 'BraA04t17685Z' => 'bra', 'BraA05t22788Z' => 'bra', 'BraA06t24032Z' => 'bra', 'BraA06t25625Z' => 'bra', 'BraA07t27930Z' => 'bra', 'BraA08t35242Z' => 'bra', 'BraA09t38609Z' => 'bra', 'BraA10t43905Z' => 'bra', 'C02p11060' => 'bna', 'C03p42990' => 'bna', 'C03p67310' => 'bna', 'C04p56990' => 'bna', 'C04p58660' => 'bna', 'C05p09890' => 'bna', 'C05p59680' => 'bna', 'C06p19830' => 'bna', 'C06p53040' => 'bna', 'C07p15230' => 'bna', 'C08p50070' => 'bna', 'C08p50090' => 'bna', 'C09p38330' => 'bna', 'C09p53940' => 'bna', 'CAN.G1014.1' => 'can', 'CAN.G644.30' => 'can', 'CAN.G84.47' => 'can', 'CAN.G919.8' => 'can', 'CANSAT54G0113' => 'cansat', 'CANSAT54G1286' => 'cansat', 'CANSAT64G1020' => 'cansat', 'CARHR008080' => 'chi', 'CARHR008090' => 'chi', 'CARHR012130' => 'chi', 'CARHR038390' => 'chi', 'CARHR082330' => 'chi', 'CARHR120520' => 'chi', 'CARHR151470' => 'chi', 'CARHR190950' => 'chi', 'Carub.0001s0760' => 'cru', 'Carub.0001s1146' => 'cru', 'Carub.0003s0721' => 'cru', 'Carub.0004s0858' => 'cru', 'Carub.0005s1040' => 'cru', 'Carub.0006s2035' => 'cru', 'Carub.0015s0005' => 'cru', 'Ca_01607_v3' => 'car', 'Ca_01677_v3' => 'car', 'Ca_06087_v3' => 'car', 'Ca_19238_v3' => 'car', 'Ca_19373_v3' => 'car', 'Ca_21079_v3' => 'car', 'CBR_g54016' => 'cbr', 'CBR_g54018' => 'cbr', 'CBR_g54020' => 'cbr', 'Cc01_g09780' => 'ccan', 'Cc01_g11680' => 'ccan', 'Cc02_g15610' => 'ccan', 'Cc05_g04350' => 'ccan', 'Cc09_g01580' => 'ccan', 'CDE01G0795' => 'cde', 'CDE02G2024' => 'cde', 'CDE02G2260' => 'cde', 'CDE02G4561' => 'cde', 'CDE05G2733' => 'cde', 'CDE05G3422' => 'cde', 'CDE06G2003' => 'cde', 'CDE08G0576' => 'cde', 'CDE09G0048' => 'cde', 'CDE11G0805' => 'cde', 'Cfa003644' => 'cfa', 'Cfa006290' => 'cfa', 'Cfa010080' => 'cfa', 'Cfa011376' => 'cfa', 'Cfa011576' => 'cfa', 'Cfa011577' => 'cfa', 'Cfa014389' => 'cfa', 'Ciclev10006044m.g' => 'ccl', 'Ciclev10006954m.g' => 'ccl', 'Ciclev10015131m.g' => 'ccl', 'Ciclev10015580m.g' => 'ccl', 'Ciclev10028359m.g' => 'ccl', 'Ciclev10028573m.g' => 'ccl', 'CiPaw.03G159300' => 'cil', 'CiPaw.04G115100' => 'cil', 'CiPaw.09G092800' => 'cil', 'CiPaw.10G071800' => 'cil', 'CiPaw.13G105800' => 'cil', 'CiPaw.13G141000' => 'cil', 'CiPaw.14G103400' => 'cil', 'ClCG01G012700' => 'cla', 'ClCG01G012720' => 'cla', 'ClCG01G021920' => 'cla', 'ClCG02G008870' => 'cla', 'ClCG02G020840' => 'cla', 'ClCG02G021930' => 'cla', 'COL.COLO4_19302' => 'col', 'COL.COLO4_25262' => 'col', 'COL.COLO4_31788' => 'col', 'Cpa.g.c34684' => 'cpa', 'Cpa.g.c36520.1' => 'cpa', 'Cpa.g.c45626' => 'cpa', 'Cpa.g.sc121.17' => 'cpa', 'Cpa.g.sc13.22' => 'cpa', 'Cpa.g.sc87.88' => 'cpa', 'Cre06.g261800' => 'cre', 'CsaV3_1G014500' => 'csa', 'CsaV3_1G014510' => 'csa', 'CsaV3_2G034880' => 'csa', 'CsaV3_6G014760' => 'csa', 'CsaV3_6G021500' => 'csa', 'CsaV3_6G048980' => 'csa', 'CSS0002511' => 'camsi', 'CSS0007556' => 'camsi', 'CSS0008532' => 'camsi', 'CSS0009709' => 'camsi', 'CSS0010486' => 'camsi', 'CSS0016768' => 'camsi', 'CSS0023512' => 'camsi', 'CSS0025341' => 'camsi', 'CSS0027999' => 'camsi', 'CSS0028944' => 'camsi', 'CSS0032292' => 'camsi', 'CSS0032464' => 'camsi', 'CSS0037153' => 'camsi', 'CSS0039256' => 'camsi', 'CSS0048392' => 'camsi', 'CSS0050458' => 'camsi', 'DCAR_004224' => 'dca', 'DCAR_006147' => 'dca', 'DCAR_006465' => 'dca', 'DCAR_008159' => 'dca', 'DCAR_012164' => 'dca', 'DCAR_019764' => 'dca', 'Dinv05418' => 'din', 'Dinv10839' => 'din', 'Dinv12521' => 'din', 'Dinv13900' => 'din', 'Dinv29426' => 'din', 'Duzib150G0263' => 'dzi', 'Duzib168G1178' => 'dzi', 'Duzib168G1924' => 'dzi', 'Duzib170G0299' => 'dzi', 'Duzib170G0813' => 'dzi', 'Duzib235G1128' => 'dzi', 'Duzib248G1060' => 'dzi', 'ECA232G1910' => 'eca', 'ECA233G4621' => 'eca', 'ECA238G1216' => 'eca', 'ECA238G1784' => 'eca', 'ECA248G1242' => 'eca', 'EL10Ac8g20071' => 'bvu', 'EL10Ac9g21086' => 'bvu', 'EL10Ac9g22407' => 'bvu', 'EL10Ac9g22412' => 'bvu', 'Eucgr.A01119' => 'egr', 'Eucgr.E04043' => 'egr', 'Eucgr.J00428' => 'egr', 'Eucgr.J00958' => 'egr', 'FAN11G3091' => 'fan', 'FAN11G3651' => 'fan', 'FAN16G2566' => 'fan', 'FAN21G3155' => 'fan', 'FAN21G3400' => 'fan', 'FAN21G3543' => 'fan', 'FAN25G0234' => 'fan', 'FAN25G1422' => 'fan', 'FAN25G3392' => 'fan', 'FvH4_3g01940' => 'fve', 'FvH4_3g29870' => 'fve', 'FvH4_3g33680' => 'fve', 'Glyma.09G004200' => 'gma', 'Glyma.11G151288' => 'gma', 'Glyma.11G189100' => 'gma', 'Glyma.12G072500' => 'gma', 'Glyma.12G085500' => 'gma', 'Glyma.12G181800' => 'gma', 'Glyma.12G193000' => 'gma', 'Glyma.13G309300' => 'gma', 'Glyma.13G319000' => 'gma', 'Glyma.17G012600' => 'gma', 'Gohir.A06G148600' => 'ghi', 'Gohir.A07G115800' => 'ghi', 'Gohir.A08G003600' => 'ghi', 'Gohir.A09G093300' => 'ghi', 'Gohir.A09G105400' => 'ghi', 'Gohir.A09G105500' => 'ghi', 'Gohir.D06G154600' => 'ghi', 'Gohir.D07G120200' => 'ghi', 'Gohir.D08G013900' => 'ghi', 'Gohir.D09G093100' => 'ghi', 'Gohir.D09G102200' => 'ghi', 'Gohir.D09G102300' => 'ghi', 'Gorai.001G129400' => 'gra', 'Gorai.004G008200' => 'gra', 'Gorai.006G109800' => 'gra', 'Gorai.006G119500' => 'gra', 'Gorai.006G121300' => 'gra', 'Gorai.010G180700' => 'gra', 'GSVIVG01012716001' => 'vvi', 'GSVIVG01025118001' => 'vvi', 'GSVIVG01030439001' => 'vvi', 'GSVIVG01031397001' => 'vvi', 'HanXRQChr01g0004201' => 'han', 'HanXRQChr02g0054941' => 'han', 'HanXRQChr05g0141811' => 'han', 'HanXRQChr07g0197751' => 'han', 'HanXRQChr11g0346691' => 'han', 'HanXRQChr13g0396971' => 'han', 'HanXRQChr14g0432951' => 'han', 'HanXRQChr14g0452001' => 'han', 'HanXRQChr15g0496681' => 'han', 'HanXRQChr17g0557491' => 'han', 'HanXRQChr17g0557501' => 'han', 'Haze_06809' => 'cav', 'Haze_12852' => 'cav', 'Haze_15850' => 'cav', 'Haze_23446' => 'cav', 'Haze_23942' => 'cav', 'Haze_23943' => 'cav', 'Hma1.2p1_0091F.1_g046450' => 'hma', 'Hma1.2p1_0128F.1_g059910' => 'hma', 'Hma1.2p1_0249F.1_g102260' => 'hma', 'Hma1.2p1_0453F.1_g156190' => 'hma', 'Hma1.2p1_0695F.1_g204380' => 'hma', 'Hma1.2p1_0749F.1_g212650' => 'hma', 'Hma1.2p1_2156F.1_g315420' => 'hma', 'Hma1.2p1_2686F.1_g326940' => 'hma', 'HPP92_006428' => 'vpl', 'HPP92_012069' => 'vpl', 'HPP92_014129' => 'vpl', 'HPP92_014133' => 'vpl', 'HPP92_017315' => 'vpl', 'HPP92_026445' => 'vpl', 'HPP92_026446' => 'vpl', 'Hund00774' => 'sun', 'Hund07682' => 'sun', 'Hund21413' => 'sun', 'Hund23462' => 'sun', 'Hund23463' => 'sun', 'Lalb_Chr03g0027911' => 'lal', 'Lalb_Chr13g0304271' => 'lal', 'Lalb_Chr19g0137471' => 'lal', 'Lalb_Chr22g0350651' => 'lal', 'Lalb_Chr24g0395151' => 'lal', 'Lj1A1231T40' => 'lonja', 'Lj1A221T48' => 'lonja', 'Lj1C924T12' => 'lonja', 'Lj2C993G6' => 'lonja', 'Lj3g0005790' => 'lja', 'Lj3g0015432' => 'lja', 'Lj3g0017722' => 'lja', 'Lj3g0018497' => 'lja', 'Lj4g0025071' => 'lja', 'Lsat_1_v5_gn_1_129680' => 'lsa', 'Lsat_1_v5_gn_2_25321' => 'lsa', 'Lsat_1_v5_gn_2_95461' => 'lsa', 'Lsat_1_v5_gn_4_159620' => 'lsa', 'Lsat_1_v5_gn_6_41301' => 'lsa', 'Lsat_1_v5_gn_6_74660' => 'lsa', 'Lsat_1_v5_gn_7_11520' => 'lsa', 'Lsat_1_v5_gn_9_67680' => 'lsa', 'Manes.04G008300' => 'mes', 'Manes.04G008400' => 'mes', 'Manes.04G026500' => 'mes', 'Manes.10G135300' => 'mes', 'Manes.11G157300' => 'mes', 'Manes.12G074000' => 'mes', 'Manes.16G006200' => 'mes', 'Manes.17G026400' => 'mes', 'Mapoly0024s0086' => 'mpo', 'Mapoly0024s0087' => 'mpo', 'Mapoly0071s0057' => 'mpo', 'Mapoly0204s0012' => 'mpo', 'MBI04_g37681_MAGBIO' => 'mbi', 'MBI05_g17779_MAGBIO' => 'mbi', 'MBI12_g31184_MAGBIO' => 'mbi', 'MBI17_g11083_MAGBIO' => 'mbi', 'MBI18_g03883_MAGBIO' => 'mbi', 'MBI18_g28940_MAGBIO' => 'mbi', 'MCO01G690' => 'mco', 'MD03G1109900' => 'mdo', 'MD03G1134800' => 'mdo', 'MD05G1348000' => 'mdo', 'MD10G1322400' => 'mdo', 'MD11G1123300' => 'mdo', 'MD11G1157600' => 'mdo', 'Medtr2g084875' => 'mtr', 'Medtr2g088130' => 'mtr', 'Medtr4g055310' => 'mtr', 'Medtr4g061070' => 'mtr', 'Medtr4g132250' => 'mtr', 'MELO3C004795.2' => 'cme', 'MELO3C004797.2' => 'cme', 'MELO3C007396.2' => 'cme', 'MELO3C019277.2' => 'cme', 'MELO3C021449.2' => 'cme', 'MELO3C025736.2' => 'cme', 'Migut.D02175' => 'egut', 'Migut.H01573' => 'egut', 'Migut.M01327' => 'egut', 'Migut.N02513' => 'egut', 'MSTRG.14638' => 'ama', 'MSTRG.18632' => 'ama', 'MSTRG.7203' => 'ama', 'Nitab4.5_0000533g0140' => 'nta', 'Nitab4.5_0000888g0150' => 'nta', 'Nitab4.5_0001453g0040' => 'nta', 'Nitab4.5_0002827g0090' => 'nta', 'Nitab4.5_0003082g0040' => 'nta', 'Nitab4.5_0007799g0040' => 'nta', 'Nitab4.5_0008983g0010' => 'nta', 'Nitab4.5_0009017g0020' => 'nta', 'Nn1g02132' => 'nnu', 'Nn1g03492' => 'nnu', 'Nn1g03493' => 'nnu', 'Nn1g03494' => 'nnu', 'Nn1g07164' => 'nnu', 'Nn1g07291' => 'nnu', 'Nn2g10655' => 'nnu', 'Nn2g11652' => 'nnu', 'Nn2g14008' => 'nnu', 'Nn3g17476' => 'nnu', 'Nn3g17477' => 'nnu', 'Nn4g22370' => 'nnu', 'Nn4g25255' => 'nnu', 'Nn5g27755' => 'nnu', 'Nn6g34260' => 'nnu', 'Nn6g35041' => 'nnu', 'Oeu005924.1' => 'oeu', 'Oeu008383.1' => 'oeu', 'Oeu014928.1' => 'oeu', 'Oeu019889.1' => 'oeu', 'Oeu022271.1' => 'oeu', 'Oeu025271.1' => 'oeu', 'Oeu036302.1' => 'oeu', 'Oeu044100.1' => 'oeu', 'Os01g0528300' => 'osa', 'Os03g0286200' => 'osa', 'Os04g0406600' => 'osa', 'Os07g0512000' => 'osa', 'Os07g0694600' => 'osa', 'Os08g0411000' => 'osa', 'Os09g0565700' => 'osa', 'Os09g0566050' => 'osa', 'Os10g0523700' => 'osa', 'Peaxi162Scf00002g00514' => 'pax', 'Peaxi162Scf00047g01817' => 'pax', 'Peaxi162Scf00114g00001' => 'pax', 'Peaxi162Scf00147g00613' => 'pax', 'Peaxi162Scf00389g00425' => 'pax', 'PGR042G1139' => 'pgr', 'PGR042G3273' => 'pgr', 'PGR102G2180' => 'pgr', 'PGR119G0234' => 'pgr', 'PGR119G0668' => 'pgr', 'PGSC0003DMG400007122' => 'stu', 'PGSC0003DMG400016478' => 'stu', 'PGSC0003DMG400025374' => 'stu', 'PGSC0003DMG400026536' => 'stu', 'Phvul.003G079600' => 'pvu', 'Phvul.005G115600' => 'pvu', 'Phvul.005G127100' => 'pvu', 'Phvul.006G149500' => 'pvu', 'Phvul.006G149600' => 'pvu', 'Phvul.011G071800' => 'pvu', 'Phvul.011G090400' => 'pvu', 'Potri.004G013400' => 'ptr', 'Potri.004G188100' => 'ptr', 'Potri.008G195500' => 'ptr', 'Potri.009G148800' => 'ptr', 'Potri.011G004700' => 'ptr', 'Pp3c17_22810' => 'ppa', 'Pp3c18_4480' => 'ppa', 'Pp3c19_13030' => 'ppa', 'Pp3c1_33620' => 'ppa', 'Pp3c2_9380' => 'ppa', 'PRCOL_00001023' => 'pco', 'Prupe.3G216300' => 'ppe', 'Prupe.4G019500' => 'ppe', 'Prupe.6G092500' => 'ppe', 'Prupe.6G119200' => 'ppe', 'Psat0s1945g0080' => 'psa', 'Psat0s4167g0040' => 'psa', 'Psat1g185800' => 'psa', 'Psat4g006440' => 'psa', 'Psat4g006480' => 'psa', 'Psat4g168120' => 'psa', 'Psat5g255680' => 'psa', 'Psat5g261760' => 'psa', 'Psat7g222120' => 'psa', 'PSO063G7252' => 'pso', 'PSO170G4778' => 'pso', 'PSO210G2249' => 'pso', 'PSO339G2411' => 'pso', 'PSO339G2457' => 'pso', 'PSO339G2854' => 'pso', 'PSO339G4288' => 'pso', 'PSO339G4615' => 'pso', 'PSO384G2796' => 'pso', 'PSO384G2940' => 'pso', 'PSO384G4227' => 'pso', 'PSO478G1425' => 'pso', 'PSO541G3863' => 'pso', 'PSO675G0507' => 'pso', 'PSO782G0338' => 'pso', 'PSO832G0644' => 'pso', 'QL01p013664' => 'qlo', 'QL01p036598' => 'qlo', 'QL05p072984' => 'qlo', 'QL08p005768' => 'qlo', 'QL08p032743' => 'qlo', 'QL93p0073_0439' => 'qlo', 'QL93p0073_0444' => 'qlo', 'RcHm_v2.0_Chr5g0002851' => 'rch', 'RcHm_v2.0_Chr5g0055201' => 'rch', 'RcHm_v2.0_Chr5g0061191' => 'rch', 'RcHm_v2.0_Chr7g0203231' => 'rch', 'Rhsim01G0208100' => 'rsi', 'Rhsim01G0208200' => 'rsi', 'Rhsim02G0106500' => 'rsi', 'Rhsim03G0107900' => 'rsi', 'Rhsim06G0163400' => 'rsi', 'Rhsim13G0105200' => 'rsi', 'Sabra04G0006300' => 'sbr', 'Sabra04G0127000' => 'sbr', 'Sabra08G0148700' => 'sbr', 'Sabra09G0117400' => 'sbr', 'SalBow1G3326' => 'sbo', 'SalBow3G3228' => 'sbo', 'SalBow6G1634' => 'sbo', 'SalBow6G3603' => 'sbo', 'SalBow6G5266' => 'sbo', 'SalBow7G2265' => 'sbo', 'SalBow8G0850' => 'sbo', 'SalBow8G2592' => 'sbo', 'Sc05g0009240' => 'sci', 'Sc12g0002300' => 'sci', 'Sc21g0000100' => 'sci', 'Sc21g0004720' => 'sci', 'Sed0002949' => 'sed', 'Sed0004114' => 'sed', 'Sed0004306' => 'sed', 'Sed0006172' => 'sed', 'Sed0008413' => 'sed', 'Sed0013809' => 'sed', 'Sed0019556' => 'sed', 'SEGI_03570' => 'sgi', 'SEGI_07859' => 'sgi', 'SEGI_15042' => 'sgi', 'SEGI_16263' => 'sgi', 'SEGI_16552' => 'sgi', 'SEGI_24331' => 'sgi', 'SEGI_27316' => 'sgi', 'SEGI_29521' => 'sgi', 'SEGI_41342' => 'sgi', 'SGA_v2.0_scaffold27G11617' => 'sas', 'SGA_v2.0_scaffold316G48428' => 'sas', 'SGA_v2.0_scaffold49G18261' => 'sas', 'SGA_v2.0_scaffold7G03831' => 'sas', 'SGA_v2.0_scaffold93G28359' => 'sas', 'SHI02210' => 'shi', 'SHI06028' => 'shi', 'SHI06321' => 'shi', 'SMO111G0012' => 'smo', 'SMO228G0080' => 'smo', 'SMO356G0756' => 'smo', 'Solyc02g080620.3' => 'sly', 'Solyc06g074530.1' => 'sly', 'Solyc11g066890.1' => 'sly', 'Solyc11g072520.3' => 'sly', 'Sopen02g025330' => 'spe', 'Sopen06g031000' => 'spe', 'Sopen09g008240' => 'spe', 'Sopen09g025210' => 'spe', 'Sopen11g026600' => 'spe', 'Sopen11g030170' => 'spe', 'Sp1g10420' => 'spa', 'Sp3g06570' => 'spa', 'Sp4g10660' => 'spa', 'Sp5g16460' => 'spa', 'Sp6g22710' => 'spa', 'TAR365G0112' => 'tar', 'TAR369G0717' => 'tar', 'TAR374G0976' => 'tar', 'TAR623G1128' => 'tar', 'TAR626G1937' => 'tar', 'TAR627G0123' => 'tar', 'TAR628G0305' => 'tar', 'TAR636G1176' => 'tar', 'TAR636G2442' => 'tar', 'THA.LOC104800556' => 'tha', 'THA.LOC104809501' => 'tha', 'THA.LOC104815126' => 'tha', 'THA.LOC104815732' => 'tha', 'THA.LOC104823528' => 'tha', 'Thecc.02G365600' => 'tca', 'Thecc.06G222300' => 'tca', 'Thecc.09G261800' => 'tca', 'Thecc.09G291400' => 'tca', 'Thhalv10003028m.g' => 'esa', 'Thhalv10007886m.g' => 'esa', 'Thhalv10016085m.g' => 'esa', 'Thhalv10016681m.g' => 'esa', 'Thhalv10020951m.g' => 'esa', 'TPR.G15598' => 'tpr', 'TPR.G29305' => 'tpr', 'TPR.G32395' => 'tpr', 'TPR.G36998' => 'tpr', 'TPR.G4227' => 'tpr', 'TWI18G1433' => 'twi', 'TWI31G0755' => 'twi', 'TWI38G0912' => 'twi', 'TWI75G1097' => 'twi', 'TWI75G1619' => 'twi', 'TWI79G1336' => 'twi', 'unitig_0.g943' => 'ugi', 'unitig_0.g944' => 'ugi', 'unitig_22.g6646' => 'ugi', 'unitig_37.g12681' => 'ugi', 'unitig_8.g3290' => 'ugi', 'vmacro03278' => 'vma', 'vmacro12197' => 'vma', 'vmacro14478' => 'vma', 'vmacro15787' => 'vma', 'vmacro15789' => 'vma', 'vmacro15790' => 'vma', 'vmacro15806' => 'vma', 'vmacro22907' => 'vma', 'vmacro22908' => 'vma', 'vmacro22909' => 'vma', 'vmacro23108' => 'vma', 'VMungo0540G0540' => 'vmu', 'VMungo0540G2468' => 'vmu', 'VMungo1080G0390' => 'vmu', 'VMungo1080G1165' => 'vmu', 'VMungo1127G0170' => 'vmu', 'VMungo1127G2099' => 'vmu', 'VMungo1215G3013' => 'vmu', 'Zm00001eb013110' => 'zma', 'Zm00001eb084260' => 'zma', 'Zm00001eb096110' => 'zma', 'Zm00001eb217510' => 'zma', 'Zm00001eb322550' => 'zma', 'Zm00001eb390770' => 'zma', 'Zm00001eb397170' => 'zma', 'Zm00001eb404610' => 'zma', 'Zm00001eb421790' => 'zma' ), 'gf_id' => 'HOM05D000911', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000911' ), 'data_identifier' => 'HOM05D000911', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000911', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27780' => 'bna', 'A03p35380' => 'bna', 'A04p21160' => 'bna', 'A05p40570' => 'bna', 'A06p26900' => 'bna', 'A08p33230' => 'bna', 'A09p65960' => 'bna', 'A10p18290' => 'bna', 'Aa31LG1G12990' => 'aar', 'Aa31LG1G2980' => 'aar', 'Aa31LG4G14320' => 'aar', 'Aa31LG7G11800' => 'aar', 'Aa31sc36G50' => 'aar', 'Aa31sc36G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3721' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5459' => 'aag', 'Actinidia03028' => 'ach', 'Actinidia03753' => 'ach', 'Actinidia04187' => 'ach', 'Actinidia05509' => 'ach', 'Actinidia24180' => 'ach', 'Actinidia26906' => 'ach', 'Actinidia37097' => 'ach', 'Actinidia38249' => 'ach', 'Ah.01g003470' => 'amhyb', 'Ah.01g004580' => 'amhyb', 'Ah.01g014850' => 'amhyb', 'Ah.01g016830' => 'amhyb', 'Ah.14g088000' => 'amhyb', 'AL1G22980' => 'aly', 'AL3G18990' => 'aly', 'AL4G22440' => 'aly', 'AL4G33180' => 'aly', 'AL5G22920' => 'aly', 'AL6G33660' => 'aly', 'AL8G20720' => 'aly', 'Aqoxy1G00935' => 'aox', 'Aqoxy1G02094' => 'aox', 'Aqoxy2G01239' => 'aox', 'Aqoxy4G01870' => 'aox', 'Aqoxy7G00450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.36ZVTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71EM27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5D6C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH3WRE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3NCM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RIM768' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YB5YRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z36GDV' => 'arhy', 'AT1G08250' => 'ath', 'AT1G11790' => 'ath', 'AT2G27820' => 'ath', 'AT3G07630' => 'ath', 'AT3G44720' => 'ath', 'AT5G22630' => 'ath', 'ATR0693G304' => 'atr', 'ATR0794G109' => 'atr', 'ATR0820G120' => 'atr', 'ATR1159G064' => 'atr', 'Atru.chr10.2239' => 'acertr', 'Atru.chr3.3371' => 'acertr', 'Atru.chr6.3202' => 'acertr', 'AUR62006499' => 'cqu', 'AUR62012718' => 'cqu', 'AUR62021938' => 'cqu', 'AUR62023932' => 'cqu', 'AUR62025034' => 'cqu', 'AUR62025035' => 'cqu', 'AUR62038307' => 'cqu', 'AUR62043466' => 'cqu', 'BcaB02g10748' => 'bca', 'BcaB03g13231' => 'bca', 'BcaB03g14689' => 'bca', 'BcaB05g22716' => 'bca', 'BcaB06g28172' => 'bca', 'BcaB08g36413' => 'bca', 'BcaC01g02186' => 'bca', 'BcaC01g04272' => 'bca', 'BcaC02g08080' => 'bca', 'BcaC02g08227' => 'bca', 'BcaC03g13901' => 'bca', 'BcaC04g19593' => 'bca', 'BcaC04g20874' => 'bca', 'BcaC05g29557' => 'bca', 'BcaC06g35505' => 'bca', 'BcaC07g41954' => 'bca', 'BcaC07g41955' => 'bca', 'BcaC07g41956' => 'bca', 'BcaC07g42519' => 'bca', 'BcaC07g42520' => 'bca', 'BcaC07g42523' => 'bca', 'BcaC07g42524' => 'bca', 'BcaC07g42525' => 'bca', 'BcaC08g47480' => 'bca', 'BcaC08g47481' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00530' => 'bna', 'BolC2t07178H' => 'bol', 'BolC3t16567H' => 'bol', 'BolC4t27234H' => 'bol', 'BolC5t29728H' => 'bol', 'BolC5t34622H' => 'bol', 'BolC6t40321H' => 'bol', 'BolC7t42028H' => 'bol', 'BolC8t49125H' => 'bol', 'BolC8t52538H' => 'bol', 'BolC8t52539H' => 'bol', 'BolC9t56681H' => 'bol', 'BolC9t58266H' => 'bol', 'BolSC21t60294H' => 'bol', 'BraA02t05670Z' => 'bra', 'BraA03t12716Z' => 'bra', 'BraA04t17685Z' => 'bra', 'BraA05t22788Z' => 'bra', 'BraA06t24032Z' => 'bra', 'BraA06t25625Z' => 'bra', 'BraA07t27930Z' => 'bra', 'BraA08t35242Z' => 'bra', 'BraA09t38609Z' => 'bra', 'BraA10t43905Z' => 'bra', 'C02p11060' => 'bna', 'C03p42990' => 'bna', 'C03p67310' => 'bna', 'C04p56990' => 'bna', 'C04p58660' => 'bna', 'C05p09890' => 'bna', 'C05p59680' => 'bna', 'C06p19830' => 'bna', 'C06p53040' => 'bna', 'C07p15230' => 'bna', 'C08p50070' => 'bna', 'C08p50090' => 'bna', 'C09p38330' => 'bna', 'C09p53940' => 'bna', 'CAN.G1014.1' => 'can', 'CAN.G644.30' => 'can', 'CAN.G84.47' => 'can', 'CAN.G919.8' => 'can', 'CANSAT54G0113' => 'cansat', 'CANSAT54G1286' => 'cansat', 'CANSAT64G1020' => 'cansat', 'CARHR008080' => 'chi', 'CARHR008090' => 'chi', 'CARHR012130' => 'chi', 'CARHR038390' => 'chi', 'CARHR082330' => 'chi', 'CARHR120520' => 'chi', 'CARHR151470' => 'chi', 'CARHR190950' => 'chi', 'Carub.0001s0760' => 'cru', 'Carub.0001s1146' => 'cru', 'Carub.0003s0721' => 'cru', 'Carub.0004s0858' => 'cru', 'Carub.0005s1040' => 'cru', 'Carub.0006s2035' => 'cru', 'Carub.0015s0005' => 'cru', 'Ca_01607_v3' => 'car', 'Ca_01677_v3' => 'car', 'Ca_06087_v3' => 'car', 'Ca_19238_v3' => 'car', 'Ca_19373_v3' => 'car', 'Ca_21079_v3' => 'car', 'CBR_g54016' => 'cbr', 'CBR_g54018' => 'cbr', 'CBR_g54020' => 'cbr', 'Cc01_g09780' => 'ccan', 'Cc01_g11680' => 'ccan', 'Cc02_g15610' => 'ccan', 'Cc05_g04350' => 'ccan', 'Cc09_g01580' => 'ccan', 'CDE01G0795' => 'cde', 'CDE02G2024' => 'cde', 'CDE02G2260' => 'cde', 'CDE02G4561' => 'cde', 'CDE05G2733' => 'cde', 'CDE05G3422' => 'cde', 'CDE06G2003' => 'cde', 'CDE08G0576' => 'cde', 'CDE09G0048' => 'cde', 'CDE11G0805' => 'cde', 'Cfa003644' => 'cfa', 'Cfa006290' => 'cfa', 'Cfa010080' => 'cfa', 'Cfa011376' => 'cfa', 'Cfa011576' => 'cfa', 'Cfa011577' => 'cfa', 'Cfa014389' => 'cfa', 'Ciclev10006044m.g' => 'ccl', 'Ciclev10006954m.g' => 'ccl', 'Ciclev10015131m.g' => 'ccl', 'Ciclev10015580m.g' => 'ccl', 'Ciclev10028359m.g' => 'ccl', 'Ciclev10028573m.g' => 'ccl', 'CiPaw.03G159300' => 'cil', 'CiPaw.04G115100' => 'cil', 'CiPaw.09G092800' => 'cil', 'CiPaw.10G071800' => 'cil', 'CiPaw.13G105800' => 'cil', 'CiPaw.13G141000' => 'cil', 'CiPaw.14G103400' => 'cil', 'ClCG01G012700' => 'cla', 'ClCG01G012720' => 'cla', 'ClCG01G021920' => 'cla', 'ClCG02G008870' => 'cla', 'ClCG02G020840' => 'cla', 'ClCG02G021930' => 'cla', 'COL.COLO4_19302' => 'col', 'COL.COLO4_25262' => 'col', 'COL.COLO4_31788' => 'col', 'Cpa.g.c34684' => 'cpa', 'Cpa.g.c36520.1' => 'cpa', 'Cpa.g.c45626' => 'cpa', 'Cpa.g.sc121.17' => 'cpa', 'Cpa.g.sc13.22' => 'cpa', 'Cpa.g.sc87.88' => 'cpa', 'Cre06.g261800' => 'cre', 'CsaV3_1G014500' => 'csa', 'CsaV3_1G014510' => 'csa', 'CsaV3_2G034880' => 'csa', 'CsaV3_6G014760' => 'csa', 'CsaV3_6G021500' => 'csa', 'CsaV3_6G048980' => 'csa', 'CSS0002511' => 'camsi', 'CSS0007556' => 'camsi', 'CSS0008532' => 'camsi', 'CSS0009709' => 'camsi', 'CSS0010486' => 'camsi', 'CSS0016768' => 'camsi', 'CSS0023512' => 'camsi', 'CSS0025341' => 'camsi', 'CSS0027999' => 'camsi', 'CSS0028944' => 'camsi', 'CSS0032292' => 'camsi', 'CSS0032464' => 'camsi', 'CSS0037153' => 'camsi', 'CSS0039256' => 'camsi', 'CSS0048392' => 'camsi', 'CSS0050458' => 'camsi', 'DCAR_004224' => 'dca', 'DCAR_006147' => 'dca', 'DCAR_006465' => 'dca', 'DCAR_008159' => 'dca', 'DCAR_012164' => 'dca', 'DCAR_019764' => 'dca', 'Dinv05418' => 'din', 'Dinv10839' => 'din', 'Dinv12521' => 'din', 'Dinv13900' => 'din', 'Dinv29426' => 'din', 'Duzib150G0263' => 'dzi', 'Duzib168G1178' => 'dzi', 'Duzib168G1924' => 'dzi', 'Duzib170G0299' => 'dzi', 'Duzib170G0813' => 'dzi', 'Duzib235G1128' => 'dzi', 'Duzib248G1060' => 'dzi', 'ECA232G1910' => 'eca', 'ECA233G4621' => 'eca', 'ECA238G1216' => 'eca', 'ECA238G1784' => 'eca', 'ECA248G1242' => 'eca', 'EL10Ac8g20071' => 'bvu', 'EL10Ac9g21086' => 'bvu', 'EL10Ac9g22407' => 'bvu', 'EL10Ac9g22412' => 'bvu', 'Eucgr.A01119' => 'egr', 'Eucgr.E04043' => 'egr', 'Eucgr.J00428' => 'egr', 'Eucgr.J00958' => 'egr', 'FAN11G3091' => 'fan', 'FAN11G3651' => 'fan', 'FAN16G2566' => 'fan', 'FAN21G3155' => 'fan', 'FAN21G3400' => 'fan', 'FAN21G3543' => 'fan', 'FAN25G0234' => 'fan', 'FAN25G1422' => 'fan', 'FAN25G3392' => 'fan', 'FvH4_3g01940' => 'fve', 'FvH4_3g29870' => 'fve', 'FvH4_3g33680' => 'fve', 'Glyma.09G004200' => 'gma', 'Glyma.11G151288' => 'gma', 'Glyma.11G189100' => 'gma', 'Glyma.12G072500' => 'gma', 'Glyma.12G085500' => 'gma', 'Glyma.12G181800' => 'gma', 'Glyma.12G193000' => 'gma', 'Glyma.13G309300' => 'gma', 'Glyma.13G319000' => 'gma', 'Glyma.17G012600' => 'gma', 'Gohir.A06G148600' => 'ghi', 'Gohir.A07G115800' => 'ghi', 'Gohir.A08G003600' => 'ghi', 'Gohir.A09G093300' => 'ghi', 'Gohir.A09G105400' => 'ghi', 'Gohir.A09G105500' => 'ghi', 'Gohir.D06G154600' => 'ghi', 'Gohir.D07G120200' => 'ghi', 'Gohir.D08G013900' => 'ghi', 'Gohir.D09G093100' => 'ghi', 'Gohir.D09G102200' => 'ghi', 'Gohir.D09G102300' => 'ghi', 'Gorai.001G129400' => 'gra', 'Gorai.004G008200' => 'gra', 'Gorai.006G109800' => 'gra', 'Gorai.006G119500' => 'gra', 'Gorai.006G121300' => 'gra', 'Gorai.010G180700' => 'gra', 'GSVIVG01012716001' => 'vvi', 'GSVIVG01025118001' => 'vvi', 'GSVIVG01030439001' => 'vvi', 'GSVIVG01031397001' => 'vvi', 'HanXRQChr01g0004201' => 'han', 'HanXRQChr02g0054941' => 'han', 'HanXRQChr05g0141811' => 'han', 'HanXRQChr07g0197751' => 'han', 'HanXRQChr11g0346691' => 'han', 'HanXRQChr13g0396971' => 'han', 'HanXRQChr14g0432951' => 'han', 'HanXRQChr14g0452001' => 'han', 'HanXRQChr15g0496681' => 'han', 'HanXRQChr17g0557491' => 'han', 'HanXRQChr17g0557501' => 'han', 'Haze_06809' => 'cav', 'Haze_12852' => 'cav', 'Haze_15850' => 'cav', 'Haze_23446' => 'cav', 'Haze_23942' => 'cav', 'Haze_23943' => 'cav', 'Hma1.2p1_0091F.1_g046450' => 'hma', 'Hma1.2p1_0128F.1_g059910' => 'hma', 'Hma1.2p1_0249F.1_g102260' => 'hma', 'Hma1.2p1_0453F.1_g156190' => 'hma', 'Hma1.2p1_0695F.1_g204380' => 'hma', 'Hma1.2p1_0749F.1_g212650' => 'hma', 'Hma1.2p1_2156F.1_g315420' => 'hma', 'Hma1.2p1_2686F.1_g326940' => 'hma', 'HPP92_006428' => 'vpl', 'HPP92_012069' => 'vpl', 'HPP92_014129' => 'vpl', 'HPP92_014133' => 'vpl', 'HPP92_017315' => 'vpl', 'HPP92_026445' => 'vpl', 'HPP92_026446' => 'vpl', 'Hund00774' => 'sun', 'Hund07682' => 'sun', 'Hund21413' => 'sun', 'Hund23462' => 'sun', 'Hund23463' => 'sun', 'Lalb_Chr03g0027911' => 'lal', 'Lalb_Chr13g0304271' => 'lal', 'Lalb_Chr19g0137471' => 'lal', 'Lalb_Chr22g0350651' => 'lal', 'Lalb_Chr24g0395151' => 'lal', 'Lj1A1231T40' => 'lonja', 'Lj1A221T48' => 'lonja', 'Lj1C924T12' => 'lonja', 'Lj2C993G6' => 'lonja', 'Lj3g0005790' => 'lja', 'Lj3g0015432' => 'lja', 'Lj3g0017722' => 'lja', 'Lj3g0018497' => 'lja', 'Lj4g0025071' => 'lja', 'Lsat_1_v5_gn_1_129680' => 'lsa', 'Lsat_1_v5_gn_2_25321' => 'lsa', 'Lsat_1_v5_gn_2_95461' => 'lsa', 'Lsat_1_v5_gn_4_159620' => 'lsa', 'Lsat_1_v5_gn_6_41301' => 'lsa', 'Lsat_1_v5_gn_6_74660' => 'lsa', 'Lsat_1_v5_gn_7_11520' => 'lsa', 'Lsat_1_v5_gn_9_67680' => 'lsa', 'Manes.04G008300' => 'mes', 'Manes.04G008400' => 'mes', 'Manes.04G026500' => 'mes', 'Manes.10G135300' => 'mes', 'Manes.11G157300' => 'mes', 'Manes.12G074000' => 'mes', 'Manes.16G006200' => 'mes', 'Manes.17G026400' => 'mes', 'Mapoly0024s0086' => 'mpo', 'Mapoly0024s0087' => 'mpo', 'Mapoly0071s0057' => 'mpo', 'Mapoly0204s0012' => 'mpo', 'MBI04_g37681_MAGBIO' => 'mbi', 'MBI05_g17779_MAGBIO' => 'mbi', 'MBI12_g31184_MAGBIO' => 'mbi', 'MBI17_g11083_MAGBIO' => 'mbi', 'MBI18_g03883_MAGBIO' => 'mbi', 'MBI18_g28940_MAGBIO' => 'mbi', 'MCO01G690' => 'mco', 'MD03G1109900' => 'mdo', 'MD03G1134800' => 'mdo', 'MD05G1348000' => 'mdo', 'MD10G1322400' => 'mdo', 'MD11G1123300' => 'mdo', 'MD11G1157600' => 'mdo', 'Medtr2g084875' => 'mtr', 'Medtr2g088130' => 'mtr', 'Medtr4g055310' => 'mtr', 'Medtr4g061070' => 'mtr', 'Medtr4g132250' => 'mtr', 'MELO3C004795.2' => 'cme', 'MELO3C004797.2' => 'cme', 'MELO3C007396.2' => 'cme', 'MELO3C019277.2' => 'cme', 'MELO3C021449.2' => 'cme', 'MELO3C025736.2' => 'cme', 'Migut.D02175' => 'egut', 'Migut.H01573' => 'egut', 'Migut.M01327' => 'egut', 'Migut.N02513' => 'egut', 'MSTRG.14638' => 'ama', 'MSTRG.18632' => 'ama', 'MSTRG.7203' => 'ama', 'Nitab4.5_0000533g0140' => 'nta', 'Nitab4.5_0000888g0150' => 'nta', 'Nitab4.5_0001453g0040' => 'nta', 'Nitab4.5_0002827g0090' => 'nta', 'Nitab4.5_0003082g0040' => 'nta', 'Nitab4.5_0007799g0040' => 'nta', 'Nitab4.5_0008983g0010' => 'nta', 'Nitab4.5_0009017g0020' => 'nta', 'Nn1g02132' => 'nnu', 'Nn1g03492' => 'nnu', 'Nn1g03493' => 'nnu', 'Nn1g03494' => 'nnu', 'Nn1g07164' => 'nnu', 'Nn1g07291' => 'nnu', 'Nn2g10655' => 'nnu', 'Nn2g11652' => 'nnu', 'Nn2g14008' => 'nnu', 'Nn3g17476' => 'nnu', 'Nn3g17477' => 'nnu', 'Nn4g22370' => 'nnu', 'Nn4g25255' => 'nnu', 'Nn5g27755' => 'nnu', 'Nn6g34260' => 'nnu', 'Nn6g35041' => 'nnu', 'Oeu005924.1' => 'oeu', 'Oeu008383.1' => 'oeu', 'Oeu014928.1' => 'oeu', 'Oeu019889.1' => 'oeu', 'Oeu022271.1' => 'oeu', 'Oeu025271.1' => 'oeu', 'Oeu036302.1' => 'oeu', 'Oeu044100.1' => 'oeu', 'Os01g0528300' => 'osa', 'Os03g0286200' => 'osa', 'Os04g0406600' => 'osa', 'Os07g0512000' => 'osa', 'Os07g0694600' => 'osa', 'Os08g0411000' => 'osa', 'Os09g0565700' => 'osa', 'Os09g0566050' => 'osa', 'Os10g0523700' => 'osa', 'Peaxi162Scf00002g00514' => 'pax', 'Peaxi162Scf00047g01817' => 'pax', 'Peaxi162Scf00114g00001' => 'pax', 'Peaxi162Scf00147g00613' => 'pax', 'Peaxi162Scf00389g00425' => 'pax', 'PGR042G1139' => 'pgr', 'PGR042G3273' => 'pgr', 'PGR102G2180' => 'pgr', 'PGR119G0234' => 'pgr', 'PGR119G0668' => 'pgr', 'PGSC0003DMG400007122' => 'stu', 'PGSC0003DMG400016478' => 'stu', 'PGSC0003DMG400025374' => 'stu', 'PGSC0003DMG400026536' => 'stu', 'Phvul.003G079600' => 'pvu', 'Phvul.005G115600' => 'pvu', 'Phvul.005G127100' => 'pvu', 'Phvul.006G149500' => 'pvu', 'Phvul.006G149600' => 'pvu', 'Phvul.011G071800' => 'pvu', 'Phvul.011G090400' => 'pvu', 'Potri.004G013400' => 'ptr', 'Potri.004G188100' => 'ptr', 'Potri.008G195500' => 'ptr', 'Potri.009G148800' => 'ptr', 'Potri.011G004700' => 'ptr', 'Pp3c17_22810' => 'ppa', 'Pp3c18_4480' => 'ppa', 'Pp3c19_13030' => 'ppa', 'Pp3c1_33620' => 'ppa', 'Pp3c2_9380' => 'ppa', 'PRCOL_00001023' => 'pco', 'Prupe.3G216300' => 'ppe', 'Prupe.4G019500' => 'ppe', 'Prupe.6G092500' => 'ppe', 'Prupe.6G119200' => 'ppe', 'Psat0s1945g0080' => 'psa', 'Psat0s4167g0040' => 'psa', 'Psat1g185800' => 'psa', 'Psat4g006440' => 'psa', 'Psat4g006480' => 'psa', 'Psat4g168120' => 'psa', 'Psat5g255680' => 'psa', 'Psat5g261760' => 'psa', 'Psat7g222120' => 'psa', 'PSO063G7252' => 'pso', 'PSO170G4778' => 'pso', 'PSO210G2249' => 'pso', 'PSO339G2411' => 'pso', 'PSO339G2457' => 'pso', 'PSO339G2854' => 'pso', 'PSO339G4288' => 'pso', 'PSO339G4615' => 'pso', 'PSO384G2796' => 'pso', 'PSO384G2940' => 'pso', 'PSO384G4227' => 'pso', 'PSO478G1425' => 'pso', 'PSO541G3863' => 'pso', 'PSO675G0507' => 'pso', 'PSO782G0338' => 'pso', 'PSO832G0644' => 'pso', 'QL01p013664' => 'qlo', 'QL01p036598' => 'qlo', 'QL05p072984' => 'qlo', 'QL08p005768' => 'qlo', 'QL08p032743' => 'qlo', 'QL93p0073_0439' => 'qlo', 'QL93p0073_0444' => 'qlo', 'RcHm_v2.0_Chr5g0002851' => 'rch', 'RcHm_v2.0_Chr5g0055201' => 'rch', 'RcHm_v2.0_Chr5g0061191' => 'rch', 'RcHm_v2.0_Chr7g0203231' => 'rch', 'Rhsim01G0208100' => 'rsi', 'Rhsim01G0208200' => 'rsi', 'Rhsim02G0106500' => 'rsi', 'Rhsim03G0107900' => 'rsi', 'Rhsim06G0163400' => 'rsi', 'Rhsim13G0105200' => 'rsi', 'Sabra04G0006300' => 'sbr', 'Sabra04G0127000' => 'sbr', 'Sabra08G0148700' => 'sbr', 'Sabra09G0117400' => 'sbr', 'SalBow1G3326' => 'sbo', 'SalBow3G3228' => 'sbo', 'SalBow6G1634' => 'sbo', 'SalBow6G3603' => 'sbo', 'SalBow6G5266' => 'sbo', 'SalBow7G2265' => 'sbo', 'SalBow8G0850' => 'sbo', 'SalBow8G2592' => 'sbo', 'Sc05g0009240' => 'sci', 'Sc12g0002300' => 'sci', 'Sc21g0000100' => 'sci', 'Sc21g0004720' => 'sci', 'Sed0002949' => 'sed', 'Sed0004114' => 'sed', 'Sed0004306' => 'sed', 'Sed0006172' => 'sed', 'Sed0008413' => 'sed', 'Sed0013809' => 'sed', 'Sed0019556' => 'sed', 'SEGI_03570' => 'sgi', 'SEGI_07859' => 'sgi', 'SEGI_15042' => 'sgi', 'SEGI_16263' => 'sgi', 'SEGI_16552' => 'sgi', 'SEGI_24331' => 'sgi', 'SEGI_27316' => 'sgi', 'SEGI_29521' => 'sgi', 'SEGI_41342' => 'sgi', 'SGA_v2.0_scaffold27G11617' => 'sas', 'SGA_v2.0_scaffold316G48428' => 'sas', 'SGA_v2.0_scaffold49G18261' => 'sas', 'SGA_v2.0_scaffold7G03831' => 'sas', 'SGA_v2.0_scaffold93G28359' => 'sas', 'SHI02210' => 'shi', 'SHI06028' => 'shi', 'SHI06321' => 'shi', 'SMO111G0012' => 'smo', 'SMO228G0080' => 'smo', 'SMO356G0756' => 'smo', 'Solyc02g080620.3' => 'sly', 'Solyc06g074530.1' => 'sly', 'Solyc11g066890.1' => 'sly', 'Solyc11g072520.3' => 'sly', 'Sopen02g025330' => 'spe', 'Sopen06g031000' => 'spe', 'Sopen09g008240' => 'spe', 'Sopen09g025210' => 'spe', 'Sopen11g026600' => 'spe', 'Sopen11g030170' => 'spe', 'Sp1g10420' => 'spa', 'Sp3g06570' => 'spa', 'Sp4g10660' => 'spa', 'Sp5g16460' => 'spa', 'Sp6g22710' => 'spa', 'TAR365G0112' => 'tar', 'TAR369G0717' => 'tar', 'TAR374G0976' => 'tar', 'TAR623G1128' => 'tar', 'TAR626G1937' => 'tar', 'TAR627G0123' => 'tar', 'TAR628G0305' => 'tar', 'TAR636G1176' => 'tar', 'TAR636G2442' => 'tar', 'THA.LOC104800556' => 'tha', 'THA.LOC104809501' => 'tha', 'THA.LOC104815126' => 'tha', 'THA.LOC104815732' => 'tha', 'THA.LOC104823528' => 'tha', 'Thecc.02G365600' => 'tca', 'Thecc.06G222300' => 'tca', 'Thecc.09G261800' => 'tca', 'Thecc.09G291400' => 'tca', 'Thhalv10003028m.g' => 'esa', 'Thhalv10007886m.g' => 'esa', 'Thhalv10016085m.g' => 'esa', 'Thhalv10016681m.g' => 'esa', 'Thhalv10020951m.g' => 'esa', 'TPR.G15598' => 'tpr', 'TPR.G29305' => 'tpr', 'TPR.G32395' => 'tpr', 'TPR.G36998' => 'tpr', 'TPR.G4227' => 'tpr', 'TWI18G1433' => 'twi', 'TWI31G0755' => 'twi', 'TWI38G0912' => 'twi', 'TWI75G1097' => 'twi', 'TWI75G1619' => 'twi', 'TWI79G1336' => 'twi', 'unitig_0.g943' => 'ugi', 'unitig_0.g944' => 'ugi', 'unitig_22.g6646' => 'ugi', 'unitig_37.g12681' => 'ugi', 'unitig_8.g3290' => 'ugi', 'vmacro03278' => 'vma', 'vmacro12197' => 'vma', 'vmacro14478' => 'vma', 'vmacro15787' => 'vma', 'vmacro15789' => 'vma', 'vmacro15790' => 'vma', 'vmacro15806' => 'vma', 'vmacro22907' => 'vma', 'vmacro22908' => 'vma', 'vmacro22909' => 'vma', 'vmacro23108' => 'vma', 'VMungo0540G0540' => 'vmu', 'VMungo0540G2468' => 'vmu', 'VMungo1080G0390' => 'vmu', 'VMungo1080G1165' => 'vmu', 'VMungo1127G0170' => 'vmu', 'VMungo1127G2099' => 'vmu', 'VMungo1215G3013' => 'vmu', 'Zm00001eb013110' => 'zma', 'Zm00001eb084260' => 'zma', 'Zm00001eb096110' => 'zma', 'Zm00001eb217510' => 'zma', 'Zm00001eb322550' => 'zma', 'Zm00001eb390770' => 'zma', 'Zm00001eb397170' => 'zma', 'Zm00001eb404610' => 'zma', 'Zm00001eb421790' => 'zma' ) $gf_id = 'HOM05D000911' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000911' ) $data_identifier = 'HOM05D000911' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 16, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 5, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 6, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 8, 'nnu' => (int) 16, 'oeu' => (int) 8, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 5, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 16, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421790' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000911', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27780' => 'bna', 'A03p35380' => 'bna', 'A04p21160' => 'bna', 'A05p40570' => 'bna', 'A06p26900' => 'bna', 'A08p33230' => 'bna', 'A09p65960' => 'bna', 'A10p18290' => 'bna', 'Aa31LG1G12990' => 'aar', 'Aa31LG1G2980' => 'aar', 'Aa31LG4G14320' => 'aar', 'Aa31LG7G11800' => 'aar', 'Aa31sc36G50' => 'aar', 'Aa31sc36G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3721' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5459' => 'aag', 'Actinidia03028' => 'ach', 'Actinidia03753' => 'ach', 'Actinidia04187' => 'ach', 'Actinidia05509' => 'ach', 'Actinidia24180' => 'ach', 'Actinidia26906' => 'ach', 'Actinidia37097' => 'ach', 'Actinidia38249' => 'ach', 'Ah.01g003470' => 'amhyb', 'Ah.01g004580' => 'amhyb', 'Ah.01g014850' => 'amhyb', 'Ah.01g016830' => 'amhyb', 'Ah.14g088000' => 'amhyb', 'AL1G22980' => 'aly', 'AL3G18990' => 'aly', 'AL4G22440' => 'aly', 'AL4G33180' => 'aly', 'AL5G22920' => 'aly', 'AL6G33660' => 'aly', 'AL8G20720' => 'aly', 'Aqoxy1G00935' => 'aox', 'Aqoxy1G02094' => 'aox', 'Aqoxy2G01239' => 'aox', 'Aqoxy4G01870' => 'aox', 'Aqoxy7G00450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.36ZVTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71EM27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5D6C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH3WRE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3NCM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RIM768' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YB5YRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z36GDV' => 'arhy', 'AT1G08250' => 'ath', 'AT1G11790' => 'ath', 'AT2G27820' => 'ath', 'AT3G07630' => 'ath', 'AT3G44720' => 'ath', 'AT5G22630' => 'ath', 'ATR0693G304' => 'atr', 'ATR0794G109' => 'atr', 'ATR0820G120' => 'atr', 'ATR1159G064' => 'atr', 'Atru.chr10.2239' => 'acertr', 'Atru.chr3.3371' => 'acertr', 'Atru.chr6.3202' => 'acertr', 'AUR62006499' => 'cqu', 'AUR62012718' => 'cqu', 'AUR62021938' => 'cqu', 'AUR62023932' => 'cqu', 'AUR62025034' => 'cqu', 'AUR62025035' => 'cqu', 'AUR62038307' => 'cqu', 'AUR62043466' => 'cqu', 'BcaB02g10748' => 'bca', 'BcaB03g13231' => 'bca', 'BcaB03g14689' => 'bca', 'BcaB05g22716' => 'bca', 'BcaB06g28172' => 'bca', 'BcaB08g36413' => 'bca', 'BcaC01g02186' => 'bca', 'BcaC01g04272' => 'bca', 'BcaC02g08080' => 'bca', 'BcaC02g08227' => 'bca', 'BcaC03g13901' => 'bca', 'BcaC04g19593' => 'bca', 'BcaC04g20874' => 'bca', 'BcaC05g29557' => 'bca', 'BcaC06g35505' => 'bca', 'BcaC07g41954' => 'bca', 'BcaC07g41955' => 'bca', 'BcaC07g41956' => 'bca', 'BcaC07g42519' => 'bca', 'BcaC07g42520' => 'bca', 'BcaC07g42523' => 'bca', 'BcaC07g42524' => 'bca', 'BcaC07g42525' => 'bca', 'BcaC08g47480' => 'bca', 'BcaC08g47481' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00530' => 'bna', 'BolC2t07178H' => 'bol', 'BolC3t16567H' => 'bol', 'BolC4t27234H' => 'bol', 'BolC5t29728H' => 'bol', 'BolC5t34622H' => 'bol', 'BolC6t40321H' => 'bol', 'BolC7t42028H' => 'bol', 'BolC8t49125H' => 'bol', 'BolC8t52538H' => 'bol', 'BolC8t52539H' => 'bol', 'BolC9t56681H' => 'bol', 'BolC9t58266H' => 'bol', 'BolSC21t60294H' => 'bol', 'BraA02t05670Z' => 'bra', 'BraA03t12716Z' => 'bra', 'BraA04t17685Z' => 'bra', 'BraA05t22788Z' => 'bra', 'BraA06t24032Z' => 'bra', 'BraA06t25625Z' => 'bra', 'BraA07t27930Z' => 'bra', 'BraA08t35242Z' => 'bra', 'BraA09t38609Z' => 'bra', 'BraA10t43905Z' => 'bra', 'C02p11060' => 'bna', 'C03p42990' => 'bna', 'C03p67310' => 'bna', 'C04p56990' => 'bna', 'C04p58660' => 'bna', 'C05p09890' => 'bna', 'C05p59680' => 'bna', 'C06p19830' => 'bna', 'C06p53040' => 'bna', 'C07p15230' => 'bna', 'C08p50070' => 'bna', 'C08p50090' => 'bna', 'C09p38330' => 'bna', 'C09p53940' => 'bna', 'CAN.G1014.1' => 'can', 'CAN.G644.30' => 'can', 'CAN.G84.47' => 'can', 'CAN.G919.8' => 'can', 'CANSAT54G0113' => 'cansat', 'CANSAT54G1286' => 'cansat', 'CANSAT64G1020' => 'cansat', 'CARHR008080' => 'chi', 'CARHR008090' => 'chi', 'CARHR012130' => 'chi', 'CARHR038390' => 'chi', 'CARHR082330' => 'chi', 'CARHR120520' => 'chi', 'CARHR151470' => 'chi', 'CARHR190950' => 'chi', 'Carub.0001s0760' => 'cru', 'Carub.0001s1146' => 'cru', 'Carub.0003s0721' => 'cru', 'Carub.0004s0858' => 'cru', 'Carub.0005s1040' => 'cru', 'Carub.0006s2035' => 'cru', 'Carub.0015s0005' => 'cru', 'Ca_01607_v3' => 'car', 'Ca_01677_v3' => 'car', 'Ca_06087_v3' => 'car', 'Ca_19238_v3' => 'car', 'Ca_19373_v3' => 'car', 'Ca_21079_v3' => 'car', 'CBR_g54016' => 'cbr', 'CBR_g54018' => 'cbr', 'CBR_g54020' => 'cbr', 'Cc01_g09780' => 'ccan', 'Cc01_g11680' => 'ccan', 'Cc02_g15610' => 'ccan', 'Cc05_g04350' => 'ccan', 'Cc09_g01580' => 'ccan', 'CDE01G0795' => 'cde', 'CDE02G2024' => 'cde', 'CDE02G2260' => 'cde', 'CDE02G4561' => 'cde', 'CDE05G2733' => 'cde', 'CDE05G3422' => 'cde', 'CDE06G2003' => 'cde', 'CDE08G0576' => 'cde', 'CDE09G0048' => 'cde', 'CDE11G0805' => 'cde', 'Cfa003644' => 'cfa', 'Cfa006290' => 'cfa', 'Cfa010080' => 'cfa', 'Cfa011376' => 'cfa', 'Cfa011576' => 'cfa', 'Cfa011577' => 'cfa', 'Cfa014389' => 'cfa', 'Ciclev10006044m.g' => 'ccl', 'Ciclev10006954m.g' => 'ccl', 'Ciclev10015131m.g' => 'ccl', 'Ciclev10015580m.g' => 'ccl', 'Ciclev10028359m.g' => 'ccl', 'Ciclev10028573m.g' => 'ccl', 'CiPaw.03G159300' => 'cil', 'CiPaw.04G115100' => 'cil', 'CiPaw.09G092800' => 'cil', 'CiPaw.10G071800' => 'cil', 'CiPaw.13G105800' => 'cil', 'CiPaw.13G141000' => 'cil', 'CiPaw.14G103400' => 'cil', 'ClCG01G012700' => 'cla', 'ClCG01G012720' => 'cla', 'ClCG01G021920' => 'cla', 'ClCG02G008870' => 'cla', 'ClCG02G020840' => 'cla', 'ClCG02G021930' => 'cla', 'COL.COLO4_19302' => 'col', 'COL.COLO4_25262' => 'col', 'COL.COLO4_31788' => 'col', 'Cpa.g.c34684' => 'cpa', 'Cpa.g.c36520.1' => 'cpa', 'Cpa.g.c45626' => 'cpa', 'Cpa.g.sc121.17' => 'cpa', 'Cpa.g.sc13.22' => 'cpa', 'Cpa.g.sc87.88' => 'cpa', 'Cre06.g261800' => 'cre', 'CsaV3_1G014500' => 'csa', 'CsaV3_1G014510' => 'csa', 'CsaV3_2G034880' => 'csa', 'CsaV3_6G014760' => 'csa', 'CsaV3_6G021500' => 'csa', 'CsaV3_6G048980' => 'csa', 'CSS0002511' => 'camsi', 'CSS0007556' => 'camsi', 'CSS0008532' => 'camsi', 'CSS0009709' => 'camsi', 'CSS0010486' => 'camsi', 'CSS0016768' => 'camsi', 'CSS0023512' => 'camsi', 'CSS0025341' => 'camsi', 'CSS0027999' => 'camsi', 'CSS0028944' => 'camsi', 'CSS0032292' => 'camsi', 'CSS0032464' => 'camsi', 'CSS0037153' => 'camsi', 'CSS0039256' => 'camsi', 'CSS0048392' => 'camsi', 'CSS0050458' => 'camsi', 'DCAR_004224' => 'dca', 'DCAR_006147' => 'dca', 'DCAR_006465' => 'dca', 'DCAR_008159' => 'dca', 'DCAR_012164' => 'dca', 'DCAR_019764' => 'dca', 'Dinv05418' => 'din', 'Dinv10839' => 'din', 'Dinv12521' => 'din', 'Dinv13900' => 'din', 'Dinv29426' => 'din', 'Duzib150G0263' => 'dzi', 'Duzib168G1178' => 'dzi', 'Duzib168G1924' => 'dzi', 'Duzib170G0299' => 'dzi', 'Duzib170G0813' => 'dzi', 'Duzib235G1128' => 'dzi', 'Duzib248G1060' => 'dzi', 'ECA232G1910' => 'eca', 'ECA233G4621' => 'eca', 'ECA238G1216' => 'eca', 'ECA238G1784' => 'eca', 'ECA248G1242' => 'eca', 'EL10Ac8g20071' => 'bvu', 'EL10Ac9g21086' => 'bvu', 'EL10Ac9g22407' => 'bvu', 'EL10Ac9g22412' => 'bvu', 'Eucgr.A01119' => 'egr', 'Eucgr.E04043' => 'egr', 'Eucgr.J00428' => 'egr', 'Eucgr.J00958' => 'egr', 'FAN11G3091' => 'fan', 'FAN11G3651' => 'fan', 'FAN16G2566' => 'fan', 'FAN21G3155' => 'fan', 'FAN21G3400' => 'fan', 'FAN21G3543' => 'fan', 'FAN25G0234' => 'fan', 'FAN25G1422' => 'fan', 'FAN25G3392' => 'fan', 'FvH4_3g01940' => 'fve', 'FvH4_3g29870' => 'fve', 'FvH4_3g33680' => 'fve', 'Glyma.09G004200' => 'gma', 'Glyma.11G151288' => 'gma', 'Glyma.11G189100' => 'gma', 'Glyma.12G072500' => 'gma', 'Glyma.12G085500' => 'gma', 'Glyma.12G181800' => 'gma', 'Glyma.12G193000' => 'gma', 'Glyma.13G309300' => 'gma', 'Glyma.13G319000' => 'gma', 'Glyma.17G012600' => 'gma', 'Gohir.A06G148600' => 'ghi', 'Gohir.A07G115800' => 'ghi', 'Gohir.A08G003600' => 'ghi', 'Gohir.A09G093300' => 'ghi', 'Gohir.A09G105400' => 'ghi', 'Gohir.A09G105500' => 'ghi', 'Gohir.D06G154600' => 'ghi', 'Gohir.D07G120200' => 'ghi', 'Gohir.D08G013900' => 'ghi', 'Gohir.D09G093100' => 'ghi', 'Gohir.D09G102200' => 'ghi', 'Gohir.D09G102300' => 'ghi', 'Gorai.001G129400' => 'gra', 'Gorai.004G008200' => 'gra', 'Gorai.006G109800' => 'gra', 'Gorai.006G119500' => 'gra', 'Gorai.006G121300' => 'gra', 'Gorai.010G180700' => 'gra', 'GSVIVG01012716001' => 'vvi', 'GSVIVG01025118001' => 'vvi', 'GSVIVG01030439001' => 'vvi', 'GSVIVG01031397001' => 'vvi', 'HanXRQChr01g0004201' => 'han', 'HanXRQChr02g0054941' => 'han', 'HanXRQChr05g0141811' => 'han', 'HanXRQChr07g0197751' => 'han', 'HanXRQChr11g0346691' => 'han', 'HanXRQChr13g0396971' => 'han', 'HanXRQChr14g0432951' => 'han', 'HanXRQChr14g0452001' => 'han', 'HanXRQChr15g0496681' => 'han', 'HanXRQChr17g0557491' => 'han', 'HanXRQChr17g0557501' => 'han', 'Haze_06809' => 'cav', 'Haze_12852' => 'cav', 'Haze_15850' => 'cav', 'Haze_23446' => 'cav', 'Haze_23942' => 'cav', 'Haze_23943' => 'cav', 'Hma1.2p1_0091F.1_g046450' => 'hma', 'Hma1.2p1_0128F.1_g059910' => 'hma', 'Hma1.2p1_0249F.1_g102260' => 'hma', 'Hma1.2p1_0453F.1_g156190' => 'hma', 'Hma1.2p1_0695F.1_g204380' => 'hma', 'Hma1.2p1_0749F.1_g212650' => 'hma', 'Hma1.2p1_2156F.1_g315420' => 'hma', 'Hma1.2p1_2686F.1_g326940' => 'hma', 'HPP92_006428' => 'vpl', 'HPP92_012069' => 'vpl', 'HPP92_014129' => 'vpl', 'HPP92_014133' => 'vpl', 'HPP92_017315' => 'vpl', 'HPP92_026445' => 'vpl', 'HPP92_026446' => 'vpl', 'Hund00774' => 'sun', 'Hund07682' => 'sun', 'Hund21413' => 'sun', 'Hund23462' => 'sun', 'Hund23463' => 'sun', 'Lalb_Chr03g0027911' => 'lal', 'Lalb_Chr13g0304271' => 'lal', 'Lalb_Chr19g0137471' => 'lal', 'Lalb_Chr22g0350651' => 'lal', 'Lalb_Chr24g0395151' => 'lal', 'Lj1A1231T40' => 'lonja', 'Lj1A221T48' => 'lonja', 'Lj1C924T12' => 'lonja', 'Lj2C993G6' => 'lonja', 'Lj3g0005790' => 'lja', 'Lj3g0015432' => 'lja', 'Lj3g0017722' => 'lja', 'Lj3g0018497' => 'lja', 'Lj4g0025071' => 'lja', 'Lsat_1_v5_gn_1_129680' => 'lsa', 'Lsat_1_v5_gn_2_25321' => 'lsa', 'Lsat_1_v5_gn_2_95461' => 'lsa', 'Lsat_1_v5_gn_4_159620' => 'lsa', 'Lsat_1_v5_gn_6_41301' => 'lsa', 'Lsat_1_v5_gn_6_74660' => 'lsa', 'Lsat_1_v5_gn_7_11520' => 'lsa', 'Lsat_1_v5_gn_9_67680' => 'lsa', 'Manes.04G008300' => 'mes', 'Manes.04G008400' => 'mes', 'Manes.04G026500' => 'mes', 'Manes.10G135300' => 'mes', 'Manes.11G157300' => 'mes', 'Manes.12G074000' => 'mes', 'Manes.16G006200' => 'mes', 'Manes.17G026400' => 'mes', 'Mapoly0024s0086' => 'mpo', 'Mapoly0024s0087' => 'mpo', 'Mapoly0071s0057' => 'mpo', 'Mapoly0204s0012' => 'mpo', 'MBI04_g37681_MAGBIO' => 'mbi', 'MBI05_g17779_MAGBIO' => 'mbi', 'MBI12_g31184_MAGBIO' => 'mbi', 'MBI17_g11083_MAGBIO' => 'mbi', 'MBI18_g03883_MAGBIO' => 'mbi', 'MBI18_g28940_MAGBIO' => 'mbi', 'MCO01G690' => 'mco', 'MD03G1109900' => 'mdo', 'MD03G1134800' => 'mdo', 'MD05G1348000' => 'mdo', 'MD10G1322400' => 'mdo', 'MD11G1123300' => 'mdo', 'MD11G1157600' => 'mdo', 'Medtr2g084875' => 'mtr', 'Medtr2g088130' => 'mtr', 'Medtr4g055310' => 'mtr', 'Medtr4g061070' => 'mtr', 'Medtr4g132250' => 'mtr', 'MELO3C004795.2' => 'cme', 'MELO3C004797.2' => 'cme', 'MELO3C007396.2' => 'cme', 'MELO3C019277.2' => 'cme', 'MELO3C021449.2' => 'cme', 'MELO3C025736.2' => 'cme', 'Migut.D02175' => 'egut', 'Migut.H01573' => 'egut', 'Migut.M01327' => 'egut', 'Migut.N02513' => 'egut', 'MSTRG.14638' => 'ama', 'MSTRG.18632' => 'ama', 'MSTRG.7203' => 'ama', 'Nitab4.5_0000533g0140' => 'nta', 'Nitab4.5_0000888g0150' => 'nta', 'Nitab4.5_0001453g0040' => 'nta', 'Nitab4.5_0002827g0090' => 'nta', 'Nitab4.5_0003082g0040' => 'nta', 'Nitab4.5_0007799g0040' => 'nta', 'Nitab4.5_0008983g0010' => 'nta', 'Nitab4.5_0009017g0020' => 'nta', 'Nn1g02132' => 'nnu', 'Nn1g03492' => 'nnu', 'Nn1g03493' => 'nnu', 'Nn1g03494' => 'nnu', 'Nn1g07164' => 'nnu', 'Nn1g07291' => 'nnu', 'Nn2g10655' => 'nnu', 'Nn2g11652' => 'nnu', 'Nn2g14008' => 'nnu', 'Nn3g17476' => 'nnu', 'Nn3g17477' => 'nnu', 'Nn4g22370' => 'nnu', 'Nn4g25255' => 'nnu', 'Nn5g27755' => 'nnu', 'Nn6g34260' => 'nnu', 'Nn6g35041' => 'nnu', 'Oeu005924.1' => 'oeu', 'Oeu008383.1' => 'oeu', 'Oeu014928.1' => 'oeu', 'Oeu019889.1' => 'oeu', 'Oeu022271.1' => 'oeu', 'Oeu025271.1' => 'oeu', 'Oeu036302.1' => 'oeu', 'Oeu044100.1' => 'oeu', 'Os01g0528300' => 'osa', 'Os03g0286200' => 'osa', 'Os04g0406600' => 'osa', 'Os07g0512000' => 'osa', 'Os07g0694600' => 'osa', 'Os08g0411000' => 'osa', 'Os09g0565700' => 'osa', 'Os09g0566050' => 'osa', 'Os10g0523700' => 'osa', 'Peaxi162Scf00002g00514' => 'pax', 'Peaxi162Scf00047g01817' => 'pax', 'Peaxi162Scf00114g00001' => 'pax', 'Peaxi162Scf00147g00613' => 'pax', 'Peaxi162Scf00389g00425' => 'pax', 'PGR042G1139' => 'pgr', 'PGR042G3273' => 'pgr', 'PGR102G2180' => 'pgr', 'PGR119G0234' => 'pgr', 'PGR119G0668' => 'pgr', 'PGSC0003DMG400007122' => 'stu', 'PGSC0003DMG400016478' => 'stu', 'PGSC0003DMG400025374' => 'stu', 'PGSC0003DMG400026536' => 'stu', 'Phvul.003G079600' => 'pvu', 'Phvul.005G115600' => 'pvu', 'Phvul.005G127100' => 'pvu', 'Phvul.006G149500' => 'pvu', 'Phvul.006G149600' => 'pvu', 'Phvul.011G071800' => 'pvu', 'Phvul.011G090400' => 'pvu', 'Potri.004G013400' => 'ptr', 'Potri.004G188100' => 'ptr', 'Potri.008G195500' => 'ptr', 'Potri.009G148800' => 'ptr', 'Potri.011G004700' => 'ptr', 'Pp3c17_22810' => 'ppa', 'Pp3c18_4480' => 'ppa', 'Pp3c19_13030' => 'ppa', 'Pp3c1_33620' => 'ppa', 'Pp3c2_9380' => 'ppa', 'PRCOL_00001023' => 'pco', 'Prupe.3G216300' => 'ppe', 'Prupe.4G019500' => 'ppe', 'Prupe.6G092500' => 'ppe', 'Prupe.6G119200' => 'ppe', 'Psat0s1945g0080' => 'psa', 'Psat0s4167g0040' => 'psa', 'Psat1g185800' => 'psa', 'Psat4g006440' => 'psa', 'Psat4g006480' => 'psa', 'Psat4g168120' => 'psa', 'Psat5g255680' => 'psa', 'Psat5g261760' => 'psa', 'Psat7g222120' => 'psa', 'PSO063G7252' => 'pso', 'PSO170G4778' => 'pso', 'PSO210G2249' => 'pso', 'PSO339G2411' => 'pso', 'PSO339G2457' => 'pso', 'PSO339G2854' => 'pso', 'PSO339G4288' => 'pso', 'PSO339G4615' => 'pso', 'PSO384G2796' => 'pso', 'PSO384G2940' => 'pso', 'PSO384G4227' => 'pso', 'PSO478G1425' => 'pso', 'PSO541G3863' => 'pso', 'PSO675G0507' => 'pso', 'PSO782G0338' => 'pso', 'PSO832G0644' => 'pso', 'QL01p013664' => 'qlo', 'QL01p036598' => 'qlo', 'QL05p072984' => 'qlo', 'QL08p005768' => 'qlo', 'QL08p032743' => 'qlo', 'QL93p0073_0439' => 'qlo', 'QL93p0073_0444' => 'qlo', 'RcHm_v2.0_Chr5g0002851' => 'rch', 'RcHm_v2.0_Chr5g0055201' => 'rch', 'RcHm_v2.0_Chr5g0061191' => 'rch', 'RcHm_v2.0_Chr7g0203231' => 'rch', 'Rhsim01G0208100' => 'rsi', 'Rhsim01G0208200' => 'rsi', 'Rhsim02G0106500' => 'rsi', 'Rhsim03G0107900' => 'rsi', 'Rhsim06G0163400' => 'rsi', 'Rhsim13G0105200' => 'rsi', 'Sabra04G0006300' => 'sbr', 'Sabra04G0127000' => 'sbr', 'Sabra08G0148700' => 'sbr', 'Sabra09G0117400' => 'sbr', 'SalBow1G3326' => 'sbo', 'SalBow3G3228' => 'sbo', 'SalBow6G1634' => 'sbo', 'SalBow6G3603' => 'sbo', 'SalBow6G5266' => 'sbo', 'SalBow7G2265' => 'sbo', 'SalBow8G0850' => 'sbo', 'SalBow8G2592' => 'sbo', 'Sc05g0009240' => 'sci', 'Sc12g0002300' => 'sci', 'Sc21g0000100' => 'sci', 'Sc21g0004720' => 'sci', 'Sed0002949' => 'sed', 'Sed0004114' => 'sed', 'Sed0004306' => 'sed', 'Sed0006172' => 'sed', 'Sed0008413' => 'sed', 'Sed0013809' => 'sed', 'Sed0019556' => 'sed', 'SEGI_03570' => 'sgi', 'SEGI_07859' => 'sgi', 'SEGI_15042' => 'sgi', 'SEGI_16263' => 'sgi', 'SEGI_16552' => 'sgi', 'SEGI_24331' => 'sgi', 'SEGI_27316' => 'sgi', 'SEGI_29521' => 'sgi', 'SEGI_41342' => 'sgi', 'SGA_v2.0_scaffold27G11617' => 'sas', 'SGA_v2.0_scaffold316G48428' => 'sas', 'SGA_v2.0_scaffold49G18261' => 'sas', 'SGA_v2.0_scaffold7G03831' => 'sas', 'SGA_v2.0_scaffold93G28359' => 'sas', 'SHI02210' => 'shi', 'SHI06028' => 'shi', 'SHI06321' => 'shi', 'SMO111G0012' => 'smo', 'SMO228G0080' => 'smo', 'SMO356G0756' => 'smo', 'Solyc02g080620.3' => 'sly', 'Solyc06g074530.1' => 'sly', 'Solyc11g066890.1' => 'sly', 'Solyc11g072520.3' => 'sly', 'Sopen02g025330' => 'spe', 'Sopen06g031000' => 'spe', 'Sopen09g008240' => 'spe', 'Sopen09g025210' => 'spe', 'Sopen11g026600' => 'spe', 'Sopen11g030170' => 'spe', 'Sp1g10420' => 'spa', 'Sp3g06570' => 'spa', 'Sp4g10660' => 'spa', 'Sp5g16460' => 'spa', 'Sp6g22710' => 'spa', 'TAR365G0112' => 'tar', 'TAR369G0717' => 'tar', 'TAR374G0976' => 'tar', 'TAR623G1128' => 'tar', 'TAR626G1937' => 'tar', 'TAR627G0123' => 'tar', 'TAR628G0305' => 'tar', 'TAR636G1176' => 'tar', 'TAR636G2442' => 'tar', 'THA.LOC104800556' => 'tha', 'THA.LOC104809501' => 'tha', 'THA.LOC104815126' => 'tha', 'THA.LOC104815732' => 'tha', 'THA.LOC104823528' => 'tha', 'Thecc.02G365600' => 'tca', 'Thecc.06G222300' => 'tca', 'Thecc.09G261800' => 'tca', 'Thecc.09G291400' => 'tca', 'Thhalv10003028m.g' => 'esa', 'Thhalv10007886m.g' => 'esa', 'Thhalv10016085m.g' => 'esa', 'Thhalv10016681m.g' => 'esa', 'Thhalv10020951m.g' => 'esa', 'TPR.G15598' => 'tpr', 'TPR.G29305' => 'tpr', 'TPR.G32395' => 'tpr', 'TPR.G36998' => 'tpr', 'TPR.G4227' => 'tpr', 'TWI18G1433' => 'twi', 'TWI31G0755' => 'twi', 'TWI38G0912' => 'twi', 'TWI75G1097' => 'twi', 'TWI75G1619' => 'twi', 'TWI79G1336' => 'twi', 'unitig_0.g943' => 'ugi', 'unitig_0.g944' => 'ugi', 'unitig_22.g6646' => 'ugi', 'unitig_37.g12681' => 'ugi', 'unitig_8.g3290' => 'ugi', 'vmacro03278' => 'vma', 'vmacro12197' => 'vma', 'vmacro14478' => 'vma', 'vmacro15787' => 'vma', 'vmacro15789' => 'vma', 'vmacro15790' => 'vma', 'vmacro15806' => 'vma', 'vmacro22907' => 'vma', 'vmacro22908' => 'vma', 'vmacro22909' => 'vma', 'vmacro23108' => 'vma', 'VMungo0540G0540' => 'vmu', 'VMungo0540G2468' => 'vmu', 'VMungo1080G0390' => 'vmu', 'VMungo1080G1165' => 'vmu', 'VMungo1127G0170' => 'vmu', 'VMungo1127G2099' => 'vmu', 'VMungo1215G3013' => 'vmu', 'Zm00001eb013110' => 'zma', 'Zm00001eb084260' => 'zma', 'Zm00001eb096110' => 'zma', 'Zm00001eb217510' => 'zma', 'Zm00001eb322550' => 'zma', 'Zm00001eb390770' => 'zma', 'Zm00001eb397170' => 'zma', 'Zm00001eb404610' => 'zma', 'Zm00001eb421790' => 'zma' ), 'gf_id' => 'HOM05D000911', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000911' ), 'data_identifier' => 'HOM05D000911', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000911', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27780' => 'bna', 'A03p35380' => 'bna', 'A04p21160' => 'bna', 'A05p40570' => 'bna', 'A06p26900' => 'bna', 'A08p33230' => 'bna', 'A09p65960' => 'bna', 'A10p18290' => 'bna', 'Aa31LG1G12990' => 'aar', 'Aa31LG1G2980' => 'aar', 'Aa31LG4G14320' => 'aar', 'Aa31LG7G11800' => 'aar', 'Aa31sc36G50' => 'aar', 'Aa31sc36G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3721' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5459' => 'aag', 'Actinidia03028' => 'ach', 'Actinidia03753' => 'ach', 'Actinidia04187' => 'ach', 'Actinidia05509' => 'ach', 'Actinidia24180' => 'ach', 'Actinidia26906' => 'ach', 'Actinidia37097' => 'ach', 'Actinidia38249' => 'ach', 'Ah.01g003470' => 'amhyb', 'Ah.01g004580' => 'amhyb', 'Ah.01g014850' => 'amhyb', 'Ah.01g016830' => 'amhyb', 'Ah.14g088000' => 'amhyb', 'AL1G22980' => 'aly', 'AL3G18990' => 'aly', 'AL4G22440' => 'aly', 'AL4G33180' => 'aly', 'AL5G22920' => 'aly', 'AL6G33660' => 'aly', 'AL8G20720' => 'aly', 'Aqoxy1G00935' => 'aox', 'Aqoxy1G02094' => 'aox', 'Aqoxy2G01239' => 'aox', 'Aqoxy4G01870' => 'aox', 'Aqoxy7G00450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.36ZVTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71EM27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5D6C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH3WRE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3NCM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RIM768' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YB5YRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z36GDV' => 'arhy', 'AT1G08250' => 'ath', 'AT1G11790' => 'ath', 'AT2G27820' => 'ath', 'AT3G07630' => 'ath', 'AT3G44720' => 'ath', 'AT5G22630' => 'ath', 'ATR0693G304' => 'atr', 'ATR0794G109' => 'atr', 'ATR0820G120' => 'atr', 'ATR1159G064' => 'atr', 'Atru.chr10.2239' => 'acertr', 'Atru.chr3.3371' => 'acertr', 'Atru.chr6.3202' => 'acertr', 'AUR62006499' => 'cqu', 'AUR62012718' => 'cqu', 'AUR62021938' => 'cqu', 'AUR62023932' => 'cqu', 'AUR62025034' => 'cqu', 'AUR62025035' => 'cqu', 'AUR62038307' => 'cqu', 'AUR62043466' => 'cqu', 'BcaB02g10748' => 'bca', 'BcaB03g13231' => 'bca', 'BcaB03g14689' => 'bca', 'BcaB05g22716' => 'bca', 'BcaB06g28172' => 'bca', 'BcaB08g36413' => 'bca', 'BcaC01g02186' => 'bca', 'BcaC01g04272' => 'bca', 'BcaC02g08080' => 'bca', 'BcaC02g08227' => 'bca', 'BcaC03g13901' => 'bca', 'BcaC04g19593' => 'bca', 'BcaC04g20874' => 'bca', 'BcaC05g29557' => 'bca', 'BcaC06g35505' => 'bca', 'BcaC07g41954' => 'bca', 'BcaC07g41955' => 'bca', 'BcaC07g41956' => 'bca', 'BcaC07g42519' => 'bca', 'BcaC07g42520' => 'bca', 'BcaC07g42523' => 'bca', 'BcaC07g42524' => 'bca', 'BcaC07g42525' => 'bca', 'BcaC08g47480' => 'bca', 'BcaC08g47481' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00530' => 'bna', 'BolC2t07178H' => 'bol', 'BolC3t16567H' => 'bol', 'BolC4t27234H' => 'bol', 'BolC5t29728H' => 'bol', 'BolC5t34622H' => 'bol', 'BolC6t40321H' => 'bol', 'BolC7t42028H' => 'bol', 'BolC8t49125H' => 'bol', 'BolC8t52538H' => 'bol', 'BolC8t52539H' => 'bol', 'BolC9t56681H' => 'bol', 'BolC9t58266H' => 'bol', 'BolSC21t60294H' => 'bol', 'BraA02t05670Z' => 'bra', 'BraA03t12716Z' => 'bra', 'BraA04t17685Z' => 'bra', 'BraA05t22788Z' => 'bra', 'BraA06t24032Z' => 'bra', 'BraA06t25625Z' => 'bra', 'BraA07t27930Z' => 'bra', 'BraA08t35242Z' => 'bra', 'BraA09t38609Z' => 'bra', 'BraA10t43905Z' => 'bra', 'C02p11060' => 'bna', 'C03p42990' => 'bna', 'C03p67310' => 'bna', 'C04p56990' => 'bna', 'C04p58660' => 'bna', 'C05p09890' => 'bna', 'C05p59680' => 'bna', 'C06p19830' => 'bna', 'C06p53040' => 'bna', 'C07p15230' => 'bna', 'C08p50070' => 'bna', 'C08p50090' => 'bna', 'C09p38330' => 'bna', 'C09p53940' => 'bna', 'CAN.G1014.1' => 'can', 'CAN.G644.30' => 'can', 'CAN.G84.47' => 'can', 'CAN.G919.8' => 'can', 'CANSAT54G0113' => 'cansat', 'CANSAT54G1286' => 'cansat', 'CANSAT64G1020' => 'cansat', 'CARHR008080' => 'chi', 'CARHR008090' => 'chi', 'CARHR012130' => 'chi', 'CARHR038390' => 'chi', 'CARHR082330' => 'chi', 'CARHR120520' => 'chi', 'CARHR151470' => 'chi', 'CARHR190950' => 'chi', 'Carub.0001s0760' => 'cru', 'Carub.0001s1146' => 'cru', 'Carub.0003s0721' => 'cru', 'Carub.0004s0858' => 'cru', 'Carub.0005s1040' => 'cru', 'Carub.0006s2035' => 'cru', 'Carub.0015s0005' => 'cru', 'Ca_01607_v3' => 'car', 'Ca_01677_v3' => 'car', 'Ca_06087_v3' => 'car', 'Ca_19238_v3' => 'car', 'Ca_19373_v3' => 'car', 'Ca_21079_v3' => 'car', 'CBR_g54016' => 'cbr', 'CBR_g54018' => 'cbr', 'CBR_g54020' => 'cbr', 'Cc01_g09780' => 'ccan', 'Cc01_g11680' => 'ccan', 'Cc02_g15610' => 'ccan', 'Cc05_g04350' => 'ccan', 'Cc09_g01580' => 'ccan', 'CDE01G0795' => 'cde', 'CDE02G2024' => 'cde', 'CDE02G2260' => 'cde', 'CDE02G4561' => 'cde', 'CDE05G2733' => 'cde', 'CDE05G3422' => 'cde', 'CDE06G2003' => 'cde', 'CDE08G0576' => 'cde', 'CDE09G0048' => 'cde', 'CDE11G0805' => 'cde', 'Cfa003644' => 'cfa', 'Cfa006290' => 'cfa', 'Cfa010080' => 'cfa', 'Cfa011376' => 'cfa', 'Cfa011576' => 'cfa', 'Cfa011577' => 'cfa', 'Cfa014389' => 'cfa', 'Ciclev10006044m.g' => 'ccl', 'Ciclev10006954m.g' => 'ccl', 'Ciclev10015131m.g' => 'ccl', 'Ciclev10015580m.g' => 'ccl', 'Ciclev10028359m.g' => 'ccl', 'Ciclev10028573m.g' => 'ccl', 'CiPaw.03G159300' => 'cil', 'CiPaw.04G115100' => 'cil', 'CiPaw.09G092800' => 'cil', 'CiPaw.10G071800' => 'cil', 'CiPaw.13G105800' => 'cil', 'CiPaw.13G141000' => 'cil', 'CiPaw.14G103400' => 'cil', 'ClCG01G012700' => 'cla', 'ClCG01G012720' => 'cla', 'ClCG01G021920' => 'cla', 'ClCG02G008870' => 'cla', 'ClCG02G020840' => 'cla', 'ClCG02G021930' => 'cla', 'COL.COLO4_19302' => 'col', 'COL.COLO4_25262' => 'col', 'COL.COLO4_31788' => 'col', 'Cpa.g.c34684' => 'cpa', 'Cpa.g.c36520.1' => 'cpa', 'Cpa.g.c45626' => 'cpa', 'Cpa.g.sc121.17' => 'cpa', 'Cpa.g.sc13.22' => 'cpa', 'Cpa.g.sc87.88' => 'cpa', 'Cre06.g261800' => 'cre', 'CsaV3_1G014500' => 'csa', 'CsaV3_1G014510' => 'csa', 'CsaV3_2G034880' => 'csa', 'CsaV3_6G014760' => 'csa', 'CsaV3_6G021500' => 'csa', 'CsaV3_6G048980' => 'csa', 'CSS0002511' => 'camsi', 'CSS0007556' => 'camsi', 'CSS0008532' => 'camsi', 'CSS0009709' => 'camsi', 'CSS0010486' => 'camsi', 'CSS0016768' => 'camsi', 'CSS0023512' => 'camsi', 'CSS0025341' => 'camsi', 'CSS0027999' => 'camsi', 'CSS0028944' => 'camsi', 'CSS0032292' => 'camsi', 'CSS0032464' => 'camsi', 'CSS0037153' => 'camsi', 'CSS0039256' => 'camsi', 'CSS0048392' => 'camsi', 'CSS0050458' => 'camsi', 'DCAR_004224' => 'dca', 'DCAR_006147' => 'dca', 'DCAR_006465' => 'dca', 'DCAR_008159' => 'dca', 'DCAR_012164' => 'dca', 'DCAR_019764' => 'dca', 'Dinv05418' => 'din', 'Dinv10839' => 'din', 'Dinv12521' => 'din', 'Dinv13900' => 'din', 'Dinv29426' => 'din', 'Duzib150G0263' => 'dzi', 'Duzib168G1178' => 'dzi', 'Duzib168G1924' => 'dzi', 'Duzib170G0299' => 'dzi', 'Duzib170G0813' => 'dzi', 'Duzib235G1128' => 'dzi', 'Duzib248G1060' => 'dzi', 'ECA232G1910' => 'eca', 'ECA233G4621' => 'eca', 'ECA238G1216' => 'eca', 'ECA238G1784' => 'eca', 'ECA248G1242' => 'eca', 'EL10Ac8g20071' => 'bvu', 'EL10Ac9g21086' => 'bvu', 'EL10Ac9g22407' => 'bvu', 'EL10Ac9g22412' => 'bvu', 'Eucgr.A01119' => 'egr', 'Eucgr.E04043' => 'egr', 'Eucgr.J00428' => 'egr', 'Eucgr.J00958' => 'egr', 'FAN11G3091' => 'fan', 'FAN11G3651' => 'fan', 'FAN16G2566' => 'fan', 'FAN21G3155' => 'fan', 'FAN21G3400' => 'fan', 'FAN21G3543' => 'fan', 'FAN25G0234' => 'fan', 'FAN25G1422' => 'fan', 'FAN25G3392' => 'fan', 'FvH4_3g01940' => 'fve', 'FvH4_3g29870' => 'fve', 'FvH4_3g33680' => 'fve', 'Glyma.09G004200' => 'gma', 'Glyma.11G151288' => 'gma', 'Glyma.11G189100' => 'gma', 'Glyma.12G072500' => 'gma', 'Glyma.12G085500' => 'gma', 'Glyma.12G181800' => 'gma', 'Glyma.12G193000' => 'gma', 'Glyma.13G309300' => 'gma', 'Glyma.13G319000' => 'gma', 'Glyma.17G012600' => 'gma', 'Gohir.A06G148600' => 'ghi', 'Gohir.A07G115800' => 'ghi', 'Gohir.A08G003600' => 'ghi', 'Gohir.A09G093300' => 'ghi', 'Gohir.A09G105400' => 'ghi', 'Gohir.A09G105500' => 'ghi', 'Gohir.D06G154600' => 'ghi', 'Gohir.D07G120200' => 'ghi', 'Gohir.D08G013900' => 'ghi', 'Gohir.D09G093100' => 'ghi', 'Gohir.D09G102200' => 'ghi', 'Gohir.D09G102300' => 'ghi', 'Gorai.001G129400' => 'gra', 'Gorai.004G008200' => 'gra', 'Gorai.006G109800' => 'gra', 'Gorai.006G119500' => 'gra', 'Gorai.006G121300' => 'gra', 'Gorai.010G180700' => 'gra', 'GSVIVG01012716001' => 'vvi', 'GSVIVG01025118001' => 'vvi', 'GSVIVG01030439001' => 'vvi', 'GSVIVG01031397001' => 'vvi', 'HanXRQChr01g0004201' => 'han', 'HanXRQChr02g0054941' => 'han', 'HanXRQChr05g0141811' => 'han', 'HanXRQChr07g0197751' => 'han', 'HanXRQChr11g0346691' => 'han', 'HanXRQChr13g0396971' => 'han', 'HanXRQChr14g0432951' => 'han', 'HanXRQChr14g0452001' => 'han', 'HanXRQChr15g0496681' => 'han', 'HanXRQChr17g0557491' => 'han', 'HanXRQChr17g0557501' => 'han', 'Haze_06809' => 'cav', 'Haze_12852' => 'cav', 'Haze_15850' => 'cav', 'Haze_23446' => 'cav', 'Haze_23942' => 'cav', 'Haze_23943' => 'cav', 'Hma1.2p1_0091F.1_g046450' => 'hma', 'Hma1.2p1_0128F.1_g059910' => 'hma', 'Hma1.2p1_0249F.1_g102260' => 'hma', 'Hma1.2p1_0453F.1_g156190' => 'hma', 'Hma1.2p1_0695F.1_g204380' => 'hma', 'Hma1.2p1_0749F.1_g212650' => 'hma', 'Hma1.2p1_2156F.1_g315420' => 'hma', 'Hma1.2p1_2686F.1_g326940' => 'hma', 'HPP92_006428' => 'vpl', 'HPP92_012069' => 'vpl', 'HPP92_014129' => 'vpl', 'HPP92_014133' => 'vpl', 'HPP92_017315' => 'vpl', 'HPP92_026445' => 'vpl', 'HPP92_026446' => 'vpl', 'Hund00774' => 'sun', 'Hund07682' => 'sun', 'Hund21413' => 'sun', 'Hund23462' => 'sun', 'Hund23463' => 'sun', 'Lalb_Chr03g0027911' => 'lal', 'Lalb_Chr13g0304271' => 'lal', 'Lalb_Chr19g0137471' => 'lal', 'Lalb_Chr22g0350651' => 'lal', 'Lalb_Chr24g0395151' => 'lal', 'Lj1A1231T40' => 'lonja', 'Lj1A221T48' => 'lonja', 'Lj1C924T12' => 'lonja', 'Lj2C993G6' => 'lonja', 'Lj3g0005790' => 'lja', 'Lj3g0015432' => 'lja', 'Lj3g0017722' => 'lja', 'Lj3g0018497' => 'lja', 'Lj4g0025071' => 'lja', 'Lsat_1_v5_gn_1_129680' => 'lsa', 'Lsat_1_v5_gn_2_25321' => 'lsa', 'Lsat_1_v5_gn_2_95461' => 'lsa', 'Lsat_1_v5_gn_4_159620' => 'lsa', 'Lsat_1_v5_gn_6_41301' => 'lsa', 'Lsat_1_v5_gn_6_74660' => 'lsa', 'Lsat_1_v5_gn_7_11520' => 'lsa', 'Lsat_1_v5_gn_9_67680' => 'lsa', 'Manes.04G008300' => 'mes', 'Manes.04G008400' => 'mes', 'Manes.04G026500' => 'mes', 'Manes.10G135300' => 'mes', 'Manes.11G157300' => 'mes', 'Manes.12G074000' => 'mes', 'Manes.16G006200' => 'mes', 'Manes.17G026400' => 'mes', 'Mapoly0024s0086' => 'mpo', 'Mapoly0024s0087' => 'mpo', 'Mapoly0071s0057' => 'mpo', 'Mapoly0204s0012' => 'mpo', 'MBI04_g37681_MAGBIO' => 'mbi', 'MBI05_g17779_MAGBIO' => 'mbi', 'MBI12_g31184_MAGBIO' => 'mbi', 'MBI17_g11083_MAGBIO' => 'mbi', 'MBI18_g03883_MAGBIO' => 'mbi', 'MBI18_g28940_MAGBIO' => 'mbi', 'MCO01G690' => 'mco', 'MD03G1109900' => 'mdo', 'MD03G1134800' => 'mdo', 'MD05G1348000' => 'mdo', 'MD10G1322400' => 'mdo', 'MD11G1123300' => 'mdo', 'MD11G1157600' => 'mdo', 'Medtr2g084875' => 'mtr', 'Medtr2g088130' => 'mtr', 'Medtr4g055310' => 'mtr', 'Medtr4g061070' => 'mtr', 'Medtr4g132250' => 'mtr', 'MELO3C004795.2' => 'cme', 'MELO3C004797.2' => 'cme', 'MELO3C007396.2' => 'cme', 'MELO3C019277.2' => 'cme', 'MELO3C021449.2' => 'cme', 'MELO3C025736.2' => 'cme', 'Migut.D02175' => 'egut', 'Migut.H01573' => 'egut', 'Migut.M01327' => 'egut', 'Migut.N02513' => 'egut', 'MSTRG.14638' => 'ama', 'MSTRG.18632' => 'ama', 'MSTRG.7203' => 'ama', 'Nitab4.5_0000533g0140' => 'nta', 'Nitab4.5_0000888g0150' => 'nta', 'Nitab4.5_0001453g0040' => 'nta', 'Nitab4.5_0002827g0090' => 'nta', 'Nitab4.5_0003082g0040' => 'nta', 'Nitab4.5_0007799g0040' => 'nta', 'Nitab4.5_0008983g0010' => 'nta', 'Nitab4.5_0009017g0020' => 'nta', 'Nn1g02132' => 'nnu', 'Nn1g03492' => 'nnu', 'Nn1g03493' => 'nnu', 'Nn1g03494' => 'nnu', 'Nn1g07164' => 'nnu', 'Nn1g07291' => 'nnu', 'Nn2g10655' => 'nnu', 'Nn2g11652' => 'nnu', 'Nn2g14008' => 'nnu', 'Nn3g17476' => 'nnu', 'Nn3g17477' => 'nnu', 'Nn4g22370' => 'nnu', 'Nn4g25255' => 'nnu', 'Nn5g27755' => 'nnu', 'Nn6g34260' => 'nnu', 'Nn6g35041' => 'nnu', 'Oeu005924.1' => 'oeu', 'Oeu008383.1' => 'oeu', 'Oeu014928.1' => 'oeu', 'Oeu019889.1' => 'oeu', 'Oeu022271.1' => 'oeu', 'Oeu025271.1' => 'oeu', 'Oeu036302.1' => 'oeu', 'Oeu044100.1' => 'oeu', 'Os01g0528300' => 'osa', 'Os03g0286200' => 'osa', 'Os04g0406600' => 'osa', 'Os07g0512000' => 'osa', 'Os07g0694600' => 'osa', 'Os08g0411000' => 'osa', 'Os09g0565700' => 'osa', 'Os09g0566050' => 'osa', 'Os10g0523700' => 'osa', 'Peaxi162Scf00002g00514' => 'pax', 'Peaxi162Scf00047g01817' => 'pax', 'Peaxi162Scf00114g00001' => 'pax', 'Peaxi162Scf00147g00613' => 'pax', 'Peaxi162Scf00389g00425' => 'pax', 'PGR042G1139' => 'pgr', 'PGR042G3273' => 'pgr', 'PGR102G2180' => 'pgr', 'PGR119G0234' => 'pgr', 'PGR119G0668' => 'pgr', 'PGSC0003DMG400007122' => 'stu', 'PGSC0003DMG400016478' => 'stu', 'PGSC0003DMG400025374' => 'stu', 'PGSC0003DMG400026536' => 'stu', 'Phvul.003G079600' => 'pvu', 'Phvul.005G115600' => 'pvu', 'Phvul.005G127100' => 'pvu', 'Phvul.006G149500' => 'pvu', 'Phvul.006G149600' => 'pvu', 'Phvul.011G071800' => 'pvu', 'Phvul.011G090400' => 'pvu', 'Potri.004G013400' => 'ptr', 'Potri.004G188100' => 'ptr', 'Potri.008G195500' => 'ptr', 'Potri.009G148800' => 'ptr', 'Potri.011G004700' => 'ptr', 'Pp3c17_22810' => 'ppa', 'Pp3c18_4480' => 'ppa', 'Pp3c19_13030' => 'ppa', 'Pp3c1_33620' => 'ppa', 'Pp3c2_9380' => 'ppa', 'PRCOL_00001023' => 'pco', 'Prupe.3G216300' => 'ppe', 'Prupe.4G019500' => 'ppe', 'Prupe.6G092500' => 'ppe', 'Prupe.6G119200' => 'ppe', 'Psat0s1945g0080' => 'psa', 'Psat0s4167g0040' => 'psa', 'Psat1g185800' => 'psa', 'Psat4g006440' => 'psa', 'Psat4g006480' => 'psa', 'Psat4g168120' => 'psa', 'Psat5g255680' => 'psa', 'Psat5g261760' => 'psa', 'Psat7g222120' => 'psa', 'PSO063G7252' => 'pso', 'PSO170G4778' => 'pso', 'PSO210G2249' => 'pso', 'PSO339G2411' => 'pso', 'PSO339G2457' => 'pso', 'PSO339G2854' => 'pso', 'PSO339G4288' => 'pso', 'PSO339G4615' => 'pso', 'PSO384G2796' => 'pso', 'PSO384G2940' => 'pso', 'PSO384G4227' => 'pso', 'PSO478G1425' => 'pso', 'PSO541G3863' => 'pso', 'PSO675G0507' => 'pso', 'PSO782G0338' => 'pso', 'PSO832G0644' => 'pso', 'QL01p013664' => 'qlo', 'QL01p036598' => 'qlo', 'QL05p072984' => 'qlo', 'QL08p005768' => 'qlo', 'QL08p032743' => 'qlo', 'QL93p0073_0439' => 'qlo', 'QL93p0073_0444' => 'qlo', 'RcHm_v2.0_Chr5g0002851' => 'rch', 'RcHm_v2.0_Chr5g0055201' => 'rch', 'RcHm_v2.0_Chr5g0061191' => 'rch', 'RcHm_v2.0_Chr7g0203231' => 'rch', 'Rhsim01G0208100' => 'rsi', 'Rhsim01G0208200' => 'rsi', 'Rhsim02G0106500' => 'rsi', 'Rhsim03G0107900' => 'rsi', 'Rhsim06G0163400' => 'rsi', 'Rhsim13G0105200' => 'rsi', 'Sabra04G0006300' => 'sbr', 'Sabra04G0127000' => 'sbr', 'Sabra08G0148700' => 'sbr', 'Sabra09G0117400' => 'sbr', 'SalBow1G3326' => 'sbo', 'SalBow3G3228' => 'sbo', 'SalBow6G1634' => 'sbo', 'SalBow6G3603' => 'sbo', 'SalBow6G5266' => 'sbo', 'SalBow7G2265' => 'sbo', 'SalBow8G0850' => 'sbo', 'SalBow8G2592' => 'sbo', 'Sc05g0009240' => 'sci', 'Sc12g0002300' => 'sci', 'Sc21g0000100' => 'sci', 'Sc21g0004720' => 'sci', 'Sed0002949' => 'sed', 'Sed0004114' => 'sed', 'Sed0004306' => 'sed', 'Sed0006172' => 'sed', 'Sed0008413' => 'sed', 'Sed0013809' => 'sed', 'Sed0019556' => 'sed', 'SEGI_03570' => 'sgi', 'SEGI_07859' => 'sgi', 'SEGI_15042' => 'sgi', 'SEGI_16263' => 'sgi', 'SEGI_16552' => 'sgi', 'SEGI_24331' => 'sgi', 'SEGI_27316' => 'sgi', 'SEGI_29521' => 'sgi', 'SEGI_41342' => 'sgi', 'SGA_v2.0_scaffold27G11617' => 'sas', 'SGA_v2.0_scaffold316G48428' => 'sas', 'SGA_v2.0_scaffold49G18261' => 'sas', 'SGA_v2.0_scaffold7G03831' => 'sas', 'SGA_v2.0_scaffold93G28359' => 'sas', 'SHI02210' => 'shi', 'SHI06028' => 'shi', 'SHI06321' => 'shi', 'SMO111G0012' => 'smo', 'SMO228G0080' => 'smo', 'SMO356G0756' => 'smo', 'Solyc02g080620.3' => 'sly', 'Solyc06g074530.1' => 'sly', 'Solyc11g066890.1' => 'sly', 'Solyc11g072520.3' => 'sly', 'Sopen02g025330' => 'spe', 'Sopen06g031000' => 'spe', 'Sopen09g008240' => 'spe', 'Sopen09g025210' => 'spe', 'Sopen11g026600' => 'spe', 'Sopen11g030170' => 'spe', 'Sp1g10420' => 'spa', 'Sp3g06570' => 'spa', 'Sp4g10660' => 'spa', 'Sp5g16460' => 'spa', 'Sp6g22710' => 'spa', 'TAR365G0112' => 'tar', 'TAR369G0717' => 'tar', 'TAR374G0976' => 'tar', 'TAR623G1128' => 'tar', 'TAR626G1937' => 'tar', 'TAR627G0123' => 'tar', 'TAR628G0305' => 'tar', 'TAR636G1176' => 'tar', 'TAR636G2442' => 'tar', 'THA.LOC104800556' => 'tha', 'THA.LOC104809501' => 'tha', 'THA.LOC104815126' => 'tha', 'THA.LOC104815732' => 'tha', 'THA.LOC104823528' => 'tha', 'Thecc.02G365600' => 'tca', 'Thecc.06G222300' => 'tca', 'Thecc.09G261800' => 'tca', 'Thecc.09G291400' => 'tca', 'Thhalv10003028m.g' => 'esa', 'Thhalv10007886m.g' => 'esa', 'Thhalv10016085m.g' => 'esa', 'Thhalv10016681m.g' => 'esa', 'Thhalv10020951m.g' => 'esa', 'TPR.G15598' => 'tpr', 'TPR.G29305' => 'tpr', 'TPR.G32395' => 'tpr', 'TPR.G36998' => 'tpr', 'TPR.G4227' => 'tpr', 'TWI18G1433' => 'twi', 'TWI31G0755' => 'twi', 'TWI38G0912' => 'twi', 'TWI75G1097' => 'twi', 'TWI75G1619' => 'twi', 'TWI79G1336' => 'twi', 'unitig_0.g943' => 'ugi', 'unitig_0.g944' => 'ugi', 'unitig_22.g6646' => 'ugi', 'unitig_37.g12681' => 'ugi', 'unitig_8.g3290' => 'ugi', 'vmacro03278' => 'vma', 'vmacro12197' => 'vma', 'vmacro14478' => 'vma', 'vmacro15787' => 'vma', 'vmacro15789' => 'vma', 'vmacro15790' => 'vma', 'vmacro15806' => 'vma', 'vmacro22907' => 'vma', 'vmacro22908' => 'vma', 'vmacro22909' => 'vma', 'vmacro23108' => 'vma', 'VMungo0540G0540' => 'vmu', 'VMungo0540G2468' => 'vmu', 'VMungo1080G0390' => 'vmu', 'VMungo1080G1165' => 'vmu', 'VMungo1127G0170' => 'vmu', 'VMungo1127G2099' => 'vmu', 'VMungo1215G3013' => 'vmu', 'Zm00001eb013110' => 'zma', 'Zm00001eb084260' => 'zma', 'Zm00001eb096110' => 'zma', 'Zm00001eb217510' => 'zma', 'Zm00001eb322550' => 'zma', 'Zm00001eb390770' => 'zma', 'Zm00001eb397170' => 'zma', 'Zm00001eb404610' => 'zma', 'Zm00001eb421790' => 'zma' ) $gf_id = 'HOM05D000911' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000911' ) $data_identifier = 'HOM05D000911' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 16, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 5, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 6, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 8, 'nnu' => (int) 16, 'oeu' => (int) 8, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 5, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 16, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421790' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000911', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27780' => 'bna', 'A03p35380' => 'bna', 'A04p21160' => 'bna', 'A05p40570' => 'bna', 'A06p26900' => 'bna', 'A08p33230' => 'bna', 'A09p65960' => 'bna', 'A10p18290' => 'bna', 'Aa31LG1G12990' => 'aar', 'Aa31LG1G2980' => 'aar', 'Aa31LG4G14320' => 'aar', 'Aa31LG7G11800' => 'aar', 'Aa31sc36G50' => 'aar', 'Aa31sc36G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3721' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5459' => 'aag', 'Actinidia03028' => 'ach', 'Actinidia03753' => 'ach', 'Actinidia04187' => 'ach', 'Actinidia05509' => 'ach', 'Actinidia24180' => 'ach', 'Actinidia26906' => 'ach', 'Actinidia37097' => 'ach', 'Actinidia38249' => 'ach', 'Ah.01g003470' => 'amhyb', 'Ah.01g004580' => 'amhyb', 'Ah.01g014850' => 'amhyb', 'Ah.01g016830' => 'amhyb', 'Ah.14g088000' => 'amhyb', 'AL1G22980' => 'aly', 'AL3G18990' => 'aly', 'AL4G22440' => 'aly', 'AL4G33180' => 'aly', 'AL5G22920' => 'aly', 'AL6G33660' => 'aly', 'AL8G20720' => 'aly', 'Aqoxy1G00935' => 'aox', 'Aqoxy1G02094' => 'aox', 'Aqoxy2G01239' => 'aox', 'Aqoxy4G01870' => 'aox', 'Aqoxy7G00450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.36ZVTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71EM27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5D6C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH3WRE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3NCM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RIM768' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YB5YRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z36GDV' => 'arhy', 'AT1G08250' => 'ath', 'AT1G11790' => 'ath', 'AT2G27820' => 'ath', 'AT3G07630' => 'ath', 'AT3G44720' => 'ath', 'AT5G22630' => 'ath', 'ATR0693G304' => 'atr', 'ATR0794G109' => 'atr', 'ATR0820G120' => 'atr', 'ATR1159G064' => 'atr', 'Atru.chr10.2239' => 'acertr', 'Atru.chr3.3371' => 'acertr', 'Atru.chr6.3202' => 'acertr', 'AUR62006499' => 'cqu', 'AUR62012718' => 'cqu', 'AUR62021938' => 'cqu', 'AUR62023932' => 'cqu', 'AUR62025034' => 'cqu', 'AUR62025035' => 'cqu', 'AUR62038307' => 'cqu', 'AUR62043466' => 'cqu', 'BcaB02g10748' => 'bca', 'BcaB03g13231' => 'bca', 'BcaB03g14689' => 'bca', 'BcaB05g22716' => 'bca', 'BcaB06g28172' => 'bca', 'BcaB08g36413' => 'bca', 'BcaC01g02186' => 'bca', 'BcaC01g04272' => 'bca', 'BcaC02g08080' => 'bca', 'BcaC02g08227' => 'bca', 'BcaC03g13901' => 'bca', 'BcaC04g19593' => 'bca', 'BcaC04g20874' => 'bca', 'BcaC05g29557' => 'bca', 'BcaC06g35505' => 'bca', 'BcaC07g41954' => 'bca', 'BcaC07g41955' => 'bca', 'BcaC07g41956' => 'bca', 'BcaC07g42519' => 'bca', 'BcaC07g42520' => 'bca', 'BcaC07g42523' => 'bca', 'BcaC07g42524' => 'bca', 'BcaC07g42525' => 'bca', 'BcaC08g47480' => 'bca', 'BcaC08g47481' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00530' => 'bna', 'BolC2t07178H' => 'bol', 'BolC3t16567H' => 'bol', 'BolC4t27234H' => 'bol', 'BolC5t29728H' => 'bol', 'BolC5t34622H' => 'bol', 'BolC6t40321H' => 'bol', 'BolC7t42028H' => 'bol', 'BolC8t49125H' => 'bol', 'BolC8t52538H' => 'bol', 'BolC8t52539H' => 'bol', 'BolC9t56681H' => 'bol', 'BolC9t58266H' => 'bol', 'BolSC21t60294H' => 'bol', 'BraA02t05670Z' => 'bra', 'BraA03t12716Z' => 'bra', 'BraA04t17685Z' => 'bra', 'BraA05t22788Z' => 'bra', 'BraA06t24032Z' => 'bra', 'BraA06t25625Z' => 'bra', 'BraA07t27930Z' => 'bra', 'BraA08t35242Z' => 'bra', 'BraA09t38609Z' => 'bra', 'BraA10t43905Z' => 'bra', 'C02p11060' => 'bna', 'C03p42990' => 'bna', 'C03p67310' => 'bna', 'C04p56990' => 'bna', 'C04p58660' => 'bna', 'C05p09890' => 'bna', 'C05p59680' => 'bna', 'C06p19830' => 'bna', 'C06p53040' => 'bna', 'C07p15230' => 'bna', 'C08p50070' => 'bna', 'C08p50090' => 'bna', 'C09p38330' => 'bna', 'C09p53940' => 'bna', 'CAN.G1014.1' => 'can', 'CAN.G644.30' => 'can', 'CAN.G84.47' => 'can', 'CAN.G919.8' => 'can', 'CANSAT54G0113' => 'cansat', 'CANSAT54G1286' => 'cansat', 'CANSAT64G1020' => 'cansat', 'CARHR008080' => 'chi', 'CARHR008090' => 'chi', 'CARHR012130' => 'chi', 'CARHR038390' => 'chi', 'CARHR082330' => 'chi', 'CARHR120520' => 'chi', 'CARHR151470' => 'chi', 'CARHR190950' => 'chi', 'Carub.0001s0760' => 'cru', 'Carub.0001s1146' => 'cru', 'Carub.0003s0721' => 'cru', 'Carub.0004s0858' => 'cru', 'Carub.0005s1040' => 'cru', 'Carub.0006s2035' => 'cru', 'Carub.0015s0005' => 'cru', 'Ca_01607_v3' => 'car', 'Ca_01677_v3' => 'car', 'Ca_06087_v3' => 'car', 'Ca_19238_v3' => 'car', 'Ca_19373_v3' => 'car', 'Ca_21079_v3' => 'car', 'CBR_g54016' => 'cbr', 'CBR_g54018' => 'cbr', 'CBR_g54020' => 'cbr', 'Cc01_g09780' => 'ccan', 'Cc01_g11680' => 'ccan', 'Cc02_g15610' => 'ccan', 'Cc05_g04350' => 'ccan', 'Cc09_g01580' => 'ccan', 'CDE01G0795' => 'cde', 'CDE02G2024' => 'cde', 'CDE02G2260' => 'cde', 'CDE02G4561' => 'cde', 'CDE05G2733' => 'cde', 'CDE05G3422' => 'cde', 'CDE06G2003' => 'cde', 'CDE08G0576' => 'cde', 'CDE09G0048' => 'cde', 'CDE11G0805' => 'cde', 'Cfa003644' => 'cfa', 'Cfa006290' => 'cfa', 'Cfa010080' => 'cfa', 'Cfa011376' => 'cfa', 'Cfa011576' => 'cfa', 'Cfa011577' => 'cfa', 'Cfa014389' => 'cfa', 'Ciclev10006044m.g' => 'ccl', 'Ciclev10006954m.g' => 'ccl', 'Ciclev10015131m.g' => 'ccl', 'Ciclev10015580m.g' => 'ccl', 'Ciclev10028359m.g' => 'ccl', 'Ciclev10028573m.g' => 'ccl', 'CiPaw.03G159300' => 'cil', 'CiPaw.04G115100' => 'cil', 'CiPaw.09G092800' => 'cil', 'CiPaw.10G071800' => 'cil', 'CiPaw.13G105800' => 'cil', 'CiPaw.13G141000' => 'cil', 'CiPaw.14G103400' => 'cil', 'ClCG01G012700' => 'cla', 'ClCG01G012720' => 'cla', 'ClCG01G021920' => 'cla', 'ClCG02G008870' => 'cla', 'ClCG02G020840' => 'cla', 'ClCG02G021930' => 'cla', 'COL.COLO4_19302' => 'col', 'COL.COLO4_25262' => 'col', 'COL.COLO4_31788' => 'col', 'Cpa.g.c34684' => 'cpa', 'Cpa.g.c36520.1' => 'cpa', 'Cpa.g.c45626' => 'cpa', 'Cpa.g.sc121.17' => 'cpa', 'Cpa.g.sc13.22' => 'cpa', 'Cpa.g.sc87.88' => 'cpa', 'Cre06.g261800' => 'cre', 'CsaV3_1G014500' => 'csa', 'CsaV3_1G014510' => 'csa', 'CsaV3_2G034880' => 'csa', 'CsaV3_6G014760' => 'csa', 'CsaV3_6G021500' => 'csa', 'CsaV3_6G048980' => 'csa', 'CSS0002511' => 'camsi', 'CSS0007556' => 'camsi', 'CSS0008532' => 'camsi', 'CSS0009709' => 'camsi', 'CSS0010486' => 'camsi', 'CSS0016768' => 'camsi', 'CSS0023512' => 'camsi', 'CSS0025341' => 'camsi', 'CSS0027999' => 'camsi', 'CSS0028944' => 'camsi', 'CSS0032292' => 'camsi', 'CSS0032464' => 'camsi', 'CSS0037153' => 'camsi', 'CSS0039256' => 'camsi', 'CSS0048392' => 'camsi', 'CSS0050458' => 'camsi', 'DCAR_004224' => 'dca', 'DCAR_006147' => 'dca', 'DCAR_006465' => 'dca', 'DCAR_008159' => 'dca', 'DCAR_012164' => 'dca', 'DCAR_019764' => 'dca', 'Dinv05418' => 'din', 'Dinv10839' => 'din', 'Dinv12521' => 'din', 'Dinv13900' => 'din', 'Dinv29426' => 'din', 'Duzib150G0263' => 'dzi', 'Duzib168G1178' => 'dzi', 'Duzib168G1924' => 'dzi', 'Duzib170G0299' => 'dzi', 'Duzib170G0813' => 'dzi', 'Duzib235G1128' => 'dzi', 'Duzib248G1060' => 'dzi', 'ECA232G1910' => 'eca', 'ECA233G4621' => 'eca', 'ECA238G1216' => 'eca', 'ECA238G1784' => 'eca', 'ECA248G1242' => 'eca', 'EL10Ac8g20071' => 'bvu', 'EL10Ac9g21086' => 'bvu', 'EL10Ac9g22407' => 'bvu', 'EL10Ac9g22412' => 'bvu', 'Eucgr.A01119' => 'egr', 'Eucgr.E04043' => 'egr', 'Eucgr.J00428' => 'egr', 'Eucgr.J00958' => 'egr', 'FAN11G3091' => 'fan', 'FAN11G3651' => 'fan', 'FAN16G2566' => 'fan', 'FAN21G3155' => 'fan', 'FAN21G3400' => 'fan', 'FAN21G3543' => 'fan', 'FAN25G0234' => 'fan', 'FAN25G1422' => 'fan', 'FAN25G3392' => 'fan', 'FvH4_3g01940' => 'fve', 'FvH4_3g29870' => 'fve', 'FvH4_3g33680' => 'fve', 'Glyma.09G004200' => 'gma', 'Glyma.11G151288' => 'gma', 'Glyma.11G189100' => 'gma', 'Glyma.12G072500' => 'gma', 'Glyma.12G085500' => 'gma', 'Glyma.12G181800' => 'gma', 'Glyma.12G193000' => 'gma', 'Glyma.13G309300' => 'gma', 'Glyma.13G319000' => 'gma', 'Glyma.17G012600' => 'gma', 'Gohir.A06G148600' => 'ghi', 'Gohir.A07G115800' => 'ghi', 'Gohir.A08G003600' => 'ghi', 'Gohir.A09G093300' => 'ghi', 'Gohir.A09G105400' => 'ghi', 'Gohir.A09G105500' => 'ghi', 'Gohir.D06G154600' => 'ghi', 'Gohir.D07G120200' => 'ghi', 'Gohir.D08G013900' => 'ghi', 'Gohir.D09G093100' => 'ghi', 'Gohir.D09G102200' => 'ghi', 'Gohir.D09G102300' => 'ghi', 'Gorai.001G129400' => 'gra', 'Gorai.004G008200' => 'gra', 'Gorai.006G109800' => 'gra', 'Gorai.006G119500' => 'gra', 'Gorai.006G121300' => 'gra', 'Gorai.010G180700' => 'gra', 'GSVIVG01012716001' => 'vvi', 'GSVIVG01025118001' => 'vvi', 'GSVIVG01030439001' => 'vvi', 'GSVIVG01031397001' => 'vvi', 'HanXRQChr01g0004201' => 'han', 'HanXRQChr02g0054941' => 'han', 'HanXRQChr05g0141811' => 'han', 'HanXRQChr07g0197751' => 'han', 'HanXRQChr11g0346691' => 'han', 'HanXRQChr13g0396971' => 'han', 'HanXRQChr14g0432951' => 'han', 'HanXRQChr14g0452001' => 'han', 'HanXRQChr15g0496681' => 'han', 'HanXRQChr17g0557491' => 'han', 'HanXRQChr17g0557501' => 'han', 'Haze_06809' => 'cav', 'Haze_12852' => 'cav', 'Haze_15850' => 'cav', 'Haze_23446' => 'cav', 'Haze_23942' => 'cav', 'Haze_23943' => 'cav', 'Hma1.2p1_0091F.1_g046450' => 'hma', 'Hma1.2p1_0128F.1_g059910' => 'hma', 'Hma1.2p1_0249F.1_g102260' => 'hma', 'Hma1.2p1_0453F.1_g156190' => 'hma', 'Hma1.2p1_0695F.1_g204380' => 'hma', 'Hma1.2p1_0749F.1_g212650' => 'hma', 'Hma1.2p1_2156F.1_g315420' => 'hma', 'Hma1.2p1_2686F.1_g326940' => 'hma', 'HPP92_006428' => 'vpl', 'HPP92_012069' => 'vpl', 'HPP92_014129' => 'vpl', 'HPP92_014133' => 'vpl', 'HPP92_017315' => 'vpl', 'HPP92_026445' => 'vpl', 'HPP92_026446' => 'vpl', 'Hund00774' => 'sun', 'Hund07682' => 'sun', 'Hund21413' => 'sun', 'Hund23462' => 'sun', 'Hund23463' => 'sun', 'Lalb_Chr03g0027911' => 'lal', 'Lalb_Chr13g0304271' => 'lal', 'Lalb_Chr19g0137471' => 'lal', 'Lalb_Chr22g0350651' => 'lal', 'Lalb_Chr24g0395151' => 'lal', 'Lj1A1231T40' => 'lonja', 'Lj1A221T48' => 'lonja', 'Lj1C924T12' => 'lonja', 'Lj2C993G6' => 'lonja', 'Lj3g0005790' => 'lja', 'Lj3g0015432' => 'lja', 'Lj3g0017722' => 'lja', 'Lj3g0018497' => 'lja', 'Lj4g0025071' => 'lja', 'Lsat_1_v5_gn_1_129680' => 'lsa', 'Lsat_1_v5_gn_2_25321' => 'lsa', 'Lsat_1_v5_gn_2_95461' => 'lsa', 'Lsat_1_v5_gn_4_159620' => 'lsa', 'Lsat_1_v5_gn_6_41301' => 'lsa', 'Lsat_1_v5_gn_6_74660' => 'lsa', 'Lsat_1_v5_gn_7_11520' => 'lsa', 'Lsat_1_v5_gn_9_67680' => 'lsa', 'Manes.04G008300' => 'mes', 'Manes.04G008400' => 'mes', 'Manes.04G026500' => 'mes', 'Manes.10G135300' => 'mes', 'Manes.11G157300' => 'mes', 'Manes.12G074000' => 'mes', 'Manes.16G006200' => 'mes', 'Manes.17G026400' => 'mes', 'Mapoly0024s0086' => 'mpo', 'Mapoly0024s0087' => 'mpo', 'Mapoly0071s0057' => 'mpo', 'Mapoly0204s0012' => 'mpo', 'MBI04_g37681_MAGBIO' => 'mbi', 'MBI05_g17779_MAGBIO' => 'mbi', 'MBI12_g31184_MAGBIO' => 'mbi', 'MBI17_g11083_MAGBIO' => 'mbi', 'MBI18_g03883_MAGBIO' => 'mbi', 'MBI18_g28940_MAGBIO' => 'mbi', 'MCO01G690' => 'mco', 'MD03G1109900' => 'mdo', 'MD03G1134800' => 'mdo', 'MD05G1348000' => 'mdo', 'MD10G1322400' => 'mdo', 'MD11G1123300' => 'mdo', 'MD11G1157600' => 'mdo', 'Medtr2g084875' => 'mtr', 'Medtr2g088130' => 'mtr', 'Medtr4g055310' => 'mtr', 'Medtr4g061070' => 'mtr', 'Medtr4g132250' => 'mtr', 'MELO3C004795.2' => 'cme', 'MELO3C004797.2' => 'cme', 'MELO3C007396.2' => 'cme', 'MELO3C019277.2' => 'cme', 'MELO3C021449.2' => 'cme', 'MELO3C025736.2' => 'cme', 'Migut.D02175' => 'egut', 'Migut.H01573' => 'egut', 'Migut.M01327' => 'egut', 'Migut.N02513' => 'egut', 'MSTRG.14638' => 'ama', 'MSTRG.18632' => 'ama', 'MSTRG.7203' => 'ama', 'Nitab4.5_0000533g0140' => 'nta', 'Nitab4.5_0000888g0150' => 'nta', 'Nitab4.5_0001453g0040' => 'nta', 'Nitab4.5_0002827g0090' => 'nta', 'Nitab4.5_0003082g0040' => 'nta', 'Nitab4.5_0007799g0040' => 'nta', 'Nitab4.5_0008983g0010' => 'nta', 'Nitab4.5_0009017g0020' => 'nta', 'Nn1g02132' => 'nnu', 'Nn1g03492' => 'nnu', 'Nn1g03493' => 'nnu', 'Nn1g03494' => 'nnu', 'Nn1g07164' => 'nnu', 'Nn1g07291' => 'nnu', 'Nn2g10655' => 'nnu', 'Nn2g11652' => 'nnu', 'Nn2g14008' => 'nnu', 'Nn3g17476' => 'nnu', 'Nn3g17477' => 'nnu', 'Nn4g22370' => 'nnu', 'Nn4g25255' => 'nnu', 'Nn5g27755' => 'nnu', 'Nn6g34260' => 'nnu', 'Nn6g35041' => 'nnu', 'Oeu005924.1' => 'oeu', 'Oeu008383.1' => 'oeu', 'Oeu014928.1' => 'oeu', 'Oeu019889.1' => 'oeu', 'Oeu022271.1' => 'oeu', 'Oeu025271.1' => 'oeu', 'Oeu036302.1' => 'oeu', 'Oeu044100.1' => 'oeu', 'Os01g0528300' => 'osa', 'Os03g0286200' => 'osa', 'Os04g0406600' => 'osa', 'Os07g0512000' => 'osa', 'Os07g0694600' => 'osa', 'Os08g0411000' => 'osa', 'Os09g0565700' => 'osa', 'Os09g0566050' => 'osa', 'Os10g0523700' => 'osa', 'Peaxi162Scf00002g00514' => 'pax', 'Peaxi162Scf00047g01817' => 'pax', 'Peaxi162Scf00114g00001' => 'pax', 'Peaxi162Scf00147g00613' => 'pax', 'Peaxi162Scf00389g00425' => 'pax', 'PGR042G1139' => 'pgr', 'PGR042G3273' => 'pgr', 'PGR102G2180' => 'pgr', 'PGR119G0234' => 'pgr', 'PGR119G0668' => 'pgr', 'PGSC0003DMG400007122' => 'stu', 'PGSC0003DMG400016478' => 'stu', 'PGSC0003DMG400025374' => 'stu', 'PGSC0003DMG400026536' => 'stu', 'Phvul.003G079600' => 'pvu', 'Phvul.005G115600' => 'pvu', 'Phvul.005G127100' => 'pvu', 'Phvul.006G149500' => 'pvu', 'Phvul.006G149600' => 'pvu', 'Phvul.011G071800' => 'pvu', 'Phvul.011G090400' => 'pvu', 'Potri.004G013400' => 'ptr', 'Potri.004G188100' => 'ptr', 'Potri.008G195500' => 'ptr', 'Potri.009G148800' => 'ptr', 'Potri.011G004700' => 'ptr', 'Pp3c17_22810' => 'ppa', 'Pp3c18_4480' => 'ppa', 'Pp3c19_13030' => 'ppa', 'Pp3c1_33620' => 'ppa', 'Pp3c2_9380' => 'ppa', 'PRCOL_00001023' => 'pco', 'Prupe.3G216300' => 'ppe', 'Prupe.4G019500' => 'ppe', 'Prupe.6G092500' => 'ppe', 'Prupe.6G119200' => 'ppe', 'Psat0s1945g0080' => 'psa', 'Psat0s4167g0040' => 'psa', 'Psat1g185800' => 'psa', 'Psat4g006440' => 'psa', 'Psat4g006480' => 'psa', 'Psat4g168120' => 'psa', 'Psat5g255680' => 'psa', 'Psat5g261760' => 'psa', 'Psat7g222120' => 'psa', 'PSO063G7252' => 'pso', 'PSO170G4778' => 'pso', 'PSO210G2249' => 'pso', 'PSO339G2411' => 'pso', 'PSO339G2457' => 'pso', 'PSO339G2854' => 'pso', 'PSO339G4288' => 'pso', 'PSO339G4615' => 'pso', 'PSO384G2796' => 'pso', 'PSO384G2940' => 'pso', 'PSO384G4227' => 'pso', 'PSO478G1425' => 'pso', 'PSO541G3863' => 'pso', 'PSO675G0507' => 'pso', 'PSO782G0338' => 'pso', 'PSO832G0644' => 'pso', 'QL01p013664' => 'qlo', 'QL01p036598' => 'qlo', 'QL05p072984' => 'qlo', 'QL08p005768' => 'qlo', 'QL08p032743' => 'qlo', 'QL93p0073_0439' => 'qlo', 'QL93p0073_0444' => 'qlo', 'RcHm_v2.0_Chr5g0002851' => 'rch', 'RcHm_v2.0_Chr5g0055201' => 'rch', 'RcHm_v2.0_Chr5g0061191' => 'rch', 'RcHm_v2.0_Chr7g0203231' => 'rch', 'Rhsim01G0208100' => 'rsi', 'Rhsim01G0208200' => 'rsi', 'Rhsim02G0106500' => 'rsi', 'Rhsim03G0107900' => 'rsi', 'Rhsim06G0163400' => 'rsi', 'Rhsim13G0105200' => 'rsi', 'Sabra04G0006300' => 'sbr', 'Sabra04G0127000' => 'sbr', 'Sabra08G0148700' => 'sbr', 'Sabra09G0117400' => 'sbr', 'SalBow1G3326' => 'sbo', 'SalBow3G3228' => 'sbo', 'SalBow6G1634' => 'sbo', 'SalBow6G3603' => 'sbo', 'SalBow6G5266' => 'sbo', 'SalBow7G2265' => 'sbo', 'SalBow8G0850' => 'sbo', 'SalBow8G2592' => 'sbo', 'Sc05g0009240' => 'sci', 'Sc12g0002300' => 'sci', 'Sc21g0000100' => 'sci', 'Sc21g0004720' => 'sci', 'Sed0002949' => 'sed', 'Sed0004114' => 'sed', 'Sed0004306' => 'sed', 'Sed0006172' => 'sed', 'Sed0008413' => 'sed', 'Sed0013809' => 'sed', 'Sed0019556' => 'sed', 'SEGI_03570' => 'sgi', 'SEGI_07859' => 'sgi', 'SEGI_15042' => 'sgi', 'SEGI_16263' => 'sgi', 'SEGI_16552' => 'sgi', 'SEGI_24331' => 'sgi', 'SEGI_27316' => 'sgi', 'SEGI_29521' => 'sgi', 'SEGI_41342' => 'sgi', 'SGA_v2.0_scaffold27G11617' => 'sas', 'SGA_v2.0_scaffold316G48428' => 'sas', 'SGA_v2.0_scaffold49G18261' => 'sas', 'SGA_v2.0_scaffold7G03831' => 'sas', 'SGA_v2.0_scaffold93G28359' => 'sas', 'SHI02210' => 'shi', 'SHI06028' => 'shi', 'SHI06321' => 'shi', 'SMO111G0012' => 'smo', 'SMO228G0080' => 'smo', 'SMO356G0756' => 'smo', 'Solyc02g080620.3' => 'sly', 'Solyc06g074530.1' => 'sly', 'Solyc11g066890.1' => 'sly', 'Solyc11g072520.3' => 'sly', 'Sopen02g025330' => 'spe', 'Sopen06g031000' => 'spe', 'Sopen09g008240' => 'spe', 'Sopen09g025210' => 'spe', 'Sopen11g026600' => 'spe', 'Sopen11g030170' => 'spe', 'Sp1g10420' => 'spa', 'Sp3g06570' => 'spa', 'Sp4g10660' => 'spa', 'Sp5g16460' => 'spa', 'Sp6g22710' => 'spa', 'TAR365G0112' => 'tar', 'TAR369G0717' => 'tar', 'TAR374G0976' => 'tar', 'TAR623G1128' => 'tar', 'TAR626G1937' => 'tar', 'TAR627G0123' => 'tar', 'TAR628G0305' => 'tar', 'TAR636G1176' => 'tar', 'TAR636G2442' => 'tar', 'THA.LOC104800556' => 'tha', 'THA.LOC104809501' => 'tha', 'THA.LOC104815126' => 'tha', 'THA.LOC104815732' => 'tha', 'THA.LOC104823528' => 'tha', 'Thecc.02G365600' => 'tca', 'Thecc.06G222300' => 'tca', 'Thecc.09G261800' => 'tca', 'Thecc.09G291400' => 'tca', 'Thhalv10003028m.g' => 'esa', 'Thhalv10007886m.g' => 'esa', 'Thhalv10016085m.g' => 'esa', 'Thhalv10016681m.g' => 'esa', 'Thhalv10020951m.g' => 'esa', 'TPR.G15598' => 'tpr', 'TPR.G29305' => 'tpr', 'TPR.G32395' => 'tpr', 'TPR.G36998' => 'tpr', 'TPR.G4227' => 'tpr', 'TWI18G1433' => 'twi', 'TWI31G0755' => 'twi', 'TWI38G0912' => 'twi', 'TWI75G1097' => 'twi', 'TWI75G1619' => 'twi', 'TWI79G1336' => 'twi', 'unitig_0.g943' => 'ugi', 'unitig_0.g944' => 'ugi', 'unitig_22.g6646' => 'ugi', 'unitig_37.g12681' => 'ugi', 'unitig_8.g3290' => 'ugi', 'vmacro03278' => 'vma', 'vmacro12197' => 'vma', 'vmacro14478' => 'vma', 'vmacro15787' => 'vma', 'vmacro15789' => 'vma', 'vmacro15790' => 'vma', 'vmacro15806' => 'vma', 'vmacro22907' => 'vma', 'vmacro22908' => 'vma', 'vmacro22909' => 'vma', 'vmacro23108' => 'vma', 'VMungo0540G0540' => 'vmu', 'VMungo0540G2468' => 'vmu', 'VMungo1080G0390' => 'vmu', 'VMungo1080G1165' => 'vmu', 'VMungo1127G0170' => 'vmu', 'VMungo1127G2099' => 'vmu', 'VMungo1215G3013' => 'vmu', 'Zm00001eb013110' => 'zma', 'Zm00001eb084260' => 'zma', 'Zm00001eb096110' => 'zma', 'Zm00001eb217510' => 'zma', 'Zm00001eb322550' => 'zma', 'Zm00001eb390770' => 'zma', 'Zm00001eb397170' => 'zma', 'Zm00001eb404610' => 'zma', 'Zm00001eb421790' => 'zma' ), 'gf_id' => 'HOM05D000911', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000911' ), 'data_identifier' => 'HOM05D000911', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000911', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27780' => 'bna', 'A03p35380' => 'bna', 'A04p21160' => 'bna', 'A05p40570' => 'bna', 'A06p26900' => 'bna', 'A08p33230' => 'bna', 'A09p65960' => 'bna', 'A10p18290' => 'bna', 'Aa31LG1G12990' => 'aar', 'Aa31LG1G2980' => 'aar', 'Aa31LG4G14320' => 'aar', 'Aa31LG7G11800' => 'aar', 'Aa31sc36G50' => 'aar', 'Aa31sc36G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3721' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5459' => 'aag', 'Actinidia03028' => 'ach', 'Actinidia03753' => 'ach', 'Actinidia04187' => 'ach', 'Actinidia05509' => 'ach', 'Actinidia24180' => 'ach', 'Actinidia26906' => 'ach', 'Actinidia37097' => 'ach', 'Actinidia38249' => 'ach', 'Ah.01g003470' => 'amhyb', 'Ah.01g004580' => 'amhyb', 'Ah.01g014850' => 'amhyb', 'Ah.01g016830' => 'amhyb', 'Ah.14g088000' => 'amhyb', 'AL1G22980' => 'aly', 'AL3G18990' => 'aly', 'AL4G22440' => 'aly', 'AL4G33180' => 'aly', 'AL5G22920' => 'aly', 'AL6G33660' => 'aly', 'AL8G20720' => 'aly', 'Aqoxy1G00935' => 'aox', 'Aqoxy1G02094' => 'aox', 'Aqoxy2G01239' => 'aox', 'Aqoxy4G01870' => 'aox', 'Aqoxy7G00450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.36ZVTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71EM27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5D6C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH3WRE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3NCM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RIM768' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YB5YRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z36GDV' => 'arhy', 'AT1G08250' => 'ath', 'AT1G11790' => 'ath', 'AT2G27820' => 'ath', 'AT3G07630' => 'ath', 'AT3G44720' => 'ath', 'AT5G22630' => 'ath', 'ATR0693G304' => 'atr', 'ATR0794G109' => 'atr', 'ATR0820G120' => 'atr', 'ATR1159G064' => 'atr', 'Atru.chr10.2239' => 'acertr', 'Atru.chr3.3371' => 'acertr', 'Atru.chr6.3202' => 'acertr', 'AUR62006499' => 'cqu', 'AUR62012718' => 'cqu', 'AUR62021938' => 'cqu', 'AUR62023932' => 'cqu', 'AUR62025034' => 'cqu', 'AUR62025035' => 'cqu', 'AUR62038307' => 'cqu', 'AUR62043466' => 'cqu', 'BcaB02g10748' => 'bca', 'BcaB03g13231' => 'bca', 'BcaB03g14689' => 'bca', 'BcaB05g22716' => 'bca', 'BcaB06g28172' => 'bca', 'BcaB08g36413' => 'bca', 'BcaC01g02186' => 'bca', 'BcaC01g04272' => 'bca', 'BcaC02g08080' => 'bca', 'BcaC02g08227' => 'bca', 'BcaC03g13901' => 'bca', 'BcaC04g19593' => 'bca', 'BcaC04g20874' => 'bca', 'BcaC05g29557' => 'bca', 'BcaC06g35505' => 'bca', 'BcaC07g41954' => 'bca', 'BcaC07g41955' => 'bca', 'BcaC07g41956' => 'bca', 'BcaC07g42519' => 'bca', 'BcaC07g42520' => 'bca', 'BcaC07g42523' => 'bca', 'BcaC07g42524' => 'bca', 'BcaC07g42525' => 'bca', 'BcaC08g47480' => 'bca', 'BcaC08g47481' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00530' => 'bna', 'BolC2t07178H' => 'bol', 'BolC3t16567H' => 'bol', 'BolC4t27234H' => 'bol', 'BolC5t29728H' => 'bol', 'BolC5t34622H' => 'bol', 'BolC6t40321H' => 'bol', 'BolC7t42028H' => 'bol', 'BolC8t49125H' => 'bol', 'BolC8t52538H' => 'bol', 'BolC8t52539H' => 'bol', 'BolC9t56681H' => 'bol', 'BolC9t58266H' => 'bol', 'BolSC21t60294H' => 'bol', 'BraA02t05670Z' => 'bra', 'BraA03t12716Z' => 'bra', 'BraA04t17685Z' => 'bra', 'BraA05t22788Z' => 'bra', 'BraA06t24032Z' => 'bra', 'BraA06t25625Z' => 'bra', 'BraA07t27930Z' => 'bra', 'BraA08t35242Z' => 'bra', 'BraA09t38609Z' => 'bra', 'BraA10t43905Z' => 'bra', 'C02p11060' => 'bna', 'C03p42990' => 'bna', 'C03p67310' => 'bna', 'C04p56990' => 'bna', 'C04p58660' => 'bna', 'C05p09890' => 'bna', 'C05p59680' => 'bna', 'C06p19830' => 'bna', 'C06p53040' => 'bna', 'C07p15230' => 'bna', 'C08p50070' => 'bna', 'C08p50090' => 'bna', 'C09p38330' => 'bna', 'C09p53940' => 'bna', 'CAN.G1014.1' => 'can', 'CAN.G644.30' => 'can', 'CAN.G84.47' => 'can', 'CAN.G919.8' => 'can', 'CANSAT54G0113' => 'cansat', 'CANSAT54G1286' => 'cansat', 'CANSAT64G1020' => 'cansat', 'CARHR008080' => 'chi', 'CARHR008090' => 'chi', 'CARHR012130' => 'chi', 'CARHR038390' => 'chi', 'CARHR082330' => 'chi', 'CARHR120520' => 'chi', 'CARHR151470' => 'chi', 'CARHR190950' => 'chi', 'Carub.0001s0760' => 'cru', 'Carub.0001s1146' => 'cru', 'Carub.0003s0721' => 'cru', 'Carub.0004s0858' => 'cru', 'Carub.0005s1040' => 'cru', 'Carub.0006s2035' => 'cru', 'Carub.0015s0005' => 'cru', 'Ca_01607_v3' => 'car', 'Ca_01677_v3' => 'car', 'Ca_06087_v3' => 'car', 'Ca_19238_v3' => 'car', 'Ca_19373_v3' => 'car', 'Ca_21079_v3' => 'car', 'CBR_g54016' => 'cbr', 'CBR_g54018' => 'cbr', 'CBR_g54020' => 'cbr', 'Cc01_g09780' => 'ccan', 'Cc01_g11680' => 'ccan', 'Cc02_g15610' => 'ccan', 'Cc05_g04350' => 'ccan', 'Cc09_g01580' => 'ccan', 'CDE01G0795' => 'cde', 'CDE02G2024' => 'cde', 'CDE02G2260' => 'cde', 'CDE02G4561' => 'cde', 'CDE05G2733' => 'cde', 'CDE05G3422' => 'cde', 'CDE06G2003' => 'cde', 'CDE08G0576' => 'cde', 'CDE09G0048' => 'cde', 'CDE11G0805' => 'cde', 'Cfa003644' => 'cfa', 'Cfa006290' => 'cfa', 'Cfa010080' => 'cfa', 'Cfa011376' => 'cfa', 'Cfa011576' => 'cfa', 'Cfa011577' => 'cfa', 'Cfa014389' => 'cfa', 'Ciclev10006044m.g' => 'ccl', 'Ciclev10006954m.g' => 'ccl', 'Ciclev10015131m.g' => 'ccl', 'Ciclev10015580m.g' => 'ccl', 'Ciclev10028359m.g' => 'ccl', 'Ciclev10028573m.g' => 'ccl', 'CiPaw.03G159300' => 'cil', 'CiPaw.04G115100' => 'cil', 'CiPaw.09G092800' => 'cil', 'CiPaw.10G071800' => 'cil', 'CiPaw.13G105800' => 'cil', 'CiPaw.13G141000' => 'cil', 'CiPaw.14G103400' => 'cil', 'ClCG01G012700' => 'cla', 'ClCG01G012720' => 'cla', 'ClCG01G021920' => 'cla', 'ClCG02G008870' => 'cla', 'ClCG02G020840' => 'cla', 'ClCG02G021930' => 'cla', 'COL.COLO4_19302' => 'col', 'COL.COLO4_25262' => 'col', 'COL.COLO4_31788' => 'col', 'Cpa.g.c34684' => 'cpa', 'Cpa.g.c36520.1' => 'cpa', 'Cpa.g.c45626' => 'cpa', 'Cpa.g.sc121.17' => 'cpa', 'Cpa.g.sc13.22' => 'cpa', 'Cpa.g.sc87.88' => 'cpa', 'Cre06.g261800' => 'cre', 'CsaV3_1G014500' => 'csa', 'CsaV3_1G014510' => 'csa', 'CsaV3_2G034880' => 'csa', 'CsaV3_6G014760' => 'csa', 'CsaV3_6G021500' => 'csa', 'CsaV3_6G048980' => 'csa', 'CSS0002511' => 'camsi', 'CSS0007556' => 'camsi', 'CSS0008532' => 'camsi', 'CSS0009709' => 'camsi', 'CSS0010486' => 'camsi', 'CSS0016768' => 'camsi', 'CSS0023512' => 'camsi', 'CSS0025341' => 'camsi', 'CSS0027999' => 'camsi', 'CSS0028944' => 'camsi', 'CSS0032292' => 'camsi', 'CSS0032464' => 'camsi', 'CSS0037153' => 'camsi', 'CSS0039256' => 'camsi', 'CSS0048392' => 'camsi', 'CSS0050458' => 'camsi', 'DCAR_004224' => 'dca', 'DCAR_006147' => 'dca', 'DCAR_006465' => 'dca', 'DCAR_008159' => 'dca', 'DCAR_012164' => 'dca', 'DCAR_019764' => 'dca', 'Dinv05418' => 'din', 'Dinv10839' => 'din', 'Dinv12521' => 'din', 'Dinv13900' => 'din', 'Dinv29426' => 'din', 'Duzib150G0263' => 'dzi', 'Duzib168G1178' => 'dzi', 'Duzib168G1924' => 'dzi', 'Duzib170G0299' => 'dzi', 'Duzib170G0813' => 'dzi', 'Duzib235G1128' => 'dzi', 'Duzib248G1060' => 'dzi', 'ECA232G1910' => 'eca', 'ECA233G4621' => 'eca', 'ECA238G1216' => 'eca', 'ECA238G1784' => 'eca', 'ECA248G1242' => 'eca', 'EL10Ac8g20071' => 'bvu', 'EL10Ac9g21086' => 'bvu', 'EL10Ac9g22407' => 'bvu', 'EL10Ac9g22412' => 'bvu', 'Eucgr.A01119' => 'egr', 'Eucgr.E04043' => 'egr', 'Eucgr.J00428' => 'egr', 'Eucgr.J00958' => 'egr', 'FAN11G3091' => 'fan', 'FAN11G3651' => 'fan', 'FAN16G2566' => 'fan', 'FAN21G3155' => 'fan', 'FAN21G3400' => 'fan', 'FAN21G3543' => 'fan', 'FAN25G0234' => 'fan', 'FAN25G1422' => 'fan', 'FAN25G3392' => 'fan', 'FvH4_3g01940' => 'fve', 'FvH4_3g29870' => 'fve', 'FvH4_3g33680' => 'fve', 'Glyma.09G004200' => 'gma', 'Glyma.11G151288' => 'gma', 'Glyma.11G189100' => 'gma', 'Glyma.12G072500' => 'gma', 'Glyma.12G085500' => 'gma', 'Glyma.12G181800' => 'gma', 'Glyma.12G193000' => 'gma', 'Glyma.13G309300' => 'gma', 'Glyma.13G319000' => 'gma', 'Glyma.17G012600' => 'gma', 'Gohir.A06G148600' => 'ghi', 'Gohir.A07G115800' => 'ghi', 'Gohir.A08G003600' => 'ghi', 'Gohir.A09G093300' => 'ghi', 'Gohir.A09G105400' => 'ghi', 'Gohir.A09G105500' => 'ghi', 'Gohir.D06G154600' => 'ghi', 'Gohir.D07G120200' => 'ghi', 'Gohir.D08G013900' => 'ghi', 'Gohir.D09G093100' => 'ghi', 'Gohir.D09G102200' => 'ghi', 'Gohir.D09G102300' => 'ghi', 'Gorai.001G129400' => 'gra', 'Gorai.004G008200' => 'gra', 'Gorai.006G109800' => 'gra', 'Gorai.006G119500' => 'gra', 'Gorai.006G121300' => 'gra', 'Gorai.010G180700' => 'gra', 'GSVIVG01012716001' => 'vvi', 'GSVIVG01025118001' => 'vvi', 'GSVIVG01030439001' => 'vvi', 'GSVIVG01031397001' => 'vvi', 'HanXRQChr01g0004201' => 'han', 'HanXRQChr02g0054941' => 'han', 'HanXRQChr05g0141811' => 'han', 'HanXRQChr07g0197751' => 'han', 'HanXRQChr11g0346691' => 'han', 'HanXRQChr13g0396971' => 'han', 'HanXRQChr14g0432951' => 'han', 'HanXRQChr14g0452001' => 'han', 'HanXRQChr15g0496681' => 'han', 'HanXRQChr17g0557491' => 'han', 'HanXRQChr17g0557501' => 'han', 'Haze_06809' => 'cav', 'Haze_12852' => 'cav', 'Haze_15850' => 'cav', 'Haze_23446' => 'cav', 'Haze_23942' => 'cav', 'Haze_23943' => 'cav', 'Hma1.2p1_0091F.1_g046450' => 'hma', 'Hma1.2p1_0128F.1_g059910' => 'hma', 'Hma1.2p1_0249F.1_g102260' => 'hma', 'Hma1.2p1_0453F.1_g156190' => 'hma', 'Hma1.2p1_0695F.1_g204380' => 'hma', 'Hma1.2p1_0749F.1_g212650' => 'hma', 'Hma1.2p1_2156F.1_g315420' => 'hma', 'Hma1.2p1_2686F.1_g326940' => 'hma', 'HPP92_006428' => 'vpl', 'HPP92_012069' => 'vpl', 'HPP92_014129' => 'vpl', 'HPP92_014133' => 'vpl', 'HPP92_017315' => 'vpl', 'HPP92_026445' => 'vpl', 'HPP92_026446' => 'vpl', 'Hund00774' => 'sun', 'Hund07682' => 'sun', 'Hund21413' => 'sun', 'Hund23462' => 'sun', 'Hund23463' => 'sun', 'Lalb_Chr03g0027911' => 'lal', 'Lalb_Chr13g0304271' => 'lal', 'Lalb_Chr19g0137471' => 'lal', 'Lalb_Chr22g0350651' => 'lal', 'Lalb_Chr24g0395151' => 'lal', 'Lj1A1231T40' => 'lonja', 'Lj1A221T48' => 'lonja', 'Lj1C924T12' => 'lonja', 'Lj2C993G6' => 'lonja', 'Lj3g0005790' => 'lja', 'Lj3g0015432' => 'lja', 'Lj3g0017722' => 'lja', 'Lj3g0018497' => 'lja', 'Lj4g0025071' => 'lja', 'Lsat_1_v5_gn_1_129680' => 'lsa', 'Lsat_1_v5_gn_2_25321' => 'lsa', 'Lsat_1_v5_gn_2_95461' => 'lsa', 'Lsat_1_v5_gn_4_159620' => 'lsa', 'Lsat_1_v5_gn_6_41301' => 'lsa', 'Lsat_1_v5_gn_6_74660' => 'lsa', 'Lsat_1_v5_gn_7_11520' => 'lsa', 'Lsat_1_v5_gn_9_67680' => 'lsa', 'Manes.04G008300' => 'mes', 'Manes.04G008400' => 'mes', 'Manes.04G026500' => 'mes', 'Manes.10G135300' => 'mes', 'Manes.11G157300' => 'mes', 'Manes.12G074000' => 'mes', 'Manes.16G006200' => 'mes', 'Manes.17G026400' => 'mes', 'Mapoly0024s0086' => 'mpo', 'Mapoly0024s0087' => 'mpo', 'Mapoly0071s0057' => 'mpo', 'Mapoly0204s0012' => 'mpo', 'MBI04_g37681_MAGBIO' => 'mbi', 'MBI05_g17779_MAGBIO' => 'mbi', 'MBI12_g31184_MAGBIO' => 'mbi', 'MBI17_g11083_MAGBIO' => 'mbi', 'MBI18_g03883_MAGBIO' => 'mbi', 'MBI18_g28940_MAGBIO' => 'mbi', 'MCO01G690' => 'mco', 'MD03G1109900' => 'mdo', 'MD03G1134800' => 'mdo', 'MD05G1348000' => 'mdo', 'MD10G1322400' => 'mdo', 'MD11G1123300' => 'mdo', 'MD11G1157600' => 'mdo', 'Medtr2g084875' => 'mtr', 'Medtr2g088130' => 'mtr', 'Medtr4g055310' => 'mtr', 'Medtr4g061070' => 'mtr', 'Medtr4g132250' => 'mtr', 'MELO3C004795.2' => 'cme', 'MELO3C004797.2' => 'cme', 'MELO3C007396.2' => 'cme', 'MELO3C019277.2' => 'cme', 'MELO3C021449.2' => 'cme', 'MELO3C025736.2' => 'cme', 'Migut.D02175' => 'egut', 'Migut.H01573' => 'egut', 'Migut.M01327' => 'egut', 'Migut.N02513' => 'egut', 'MSTRG.14638' => 'ama', 'MSTRG.18632' => 'ama', 'MSTRG.7203' => 'ama', 'Nitab4.5_0000533g0140' => 'nta', 'Nitab4.5_0000888g0150' => 'nta', 'Nitab4.5_0001453g0040' => 'nta', 'Nitab4.5_0002827g0090' => 'nta', 'Nitab4.5_0003082g0040' => 'nta', 'Nitab4.5_0007799g0040' => 'nta', 'Nitab4.5_0008983g0010' => 'nta', 'Nitab4.5_0009017g0020' => 'nta', 'Nn1g02132' => 'nnu', 'Nn1g03492' => 'nnu', 'Nn1g03493' => 'nnu', 'Nn1g03494' => 'nnu', 'Nn1g07164' => 'nnu', 'Nn1g07291' => 'nnu', 'Nn2g10655' => 'nnu', 'Nn2g11652' => 'nnu', 'Nn2g14008' => 'nnu', 'Nn3g17476' => 'nnu', 'Nn3g17477' => 'nnu', 'Nn4g22370' => 'nnu', 'Nn4g25255' => 'nnu', 'Nn5g27755' => 'nnu', 'Nn6g34260' => 'nnu', 'Nn6g35041' => 'nnu', 'Oeu005924.1' => 'oeu', 'Oeu008383.1' => 'oeu', 'Oeu014928.1' => 'oeu', 'Oeu019889.1' => 'oeu', 'Oeu022271.1' => 'oeu', 'Oeu025271.1' => 'oeu', 'Oeu036302.1' => 'oeu', 'Oeu044100.1' => 'oeu', 'Os01g0528300' => 'osa', 'Os03g0286200' => 'osa', 'Os04g0406600' => 'osa', 'Os07g0512000' => 'osa', 'Os07g0694600' => 'osa', 'Os08g0411000' => 'osa', 'Os09g0565700' => 'osa', 'Os09g0566050' => 'osa', 'Os10g0523700' => 'osa', 'Peaxi162Scf00002g00514' => 'pax', 'Peaxi162Scf00047g01817' => 'pax', 'Peaxi162Scf00114g00001' => 'pax', 'Peaxi162Scf00147g00613' => 'pax', 'Peaxi162Scf00389g00425' => 'pax', 'PGR042G1139' => 'pgr', 'PGR042G3273' => 'pgr', 'PGR102G2180' => 'pgr', 'PGR119G0234' => 'pgr', 'PGR119G0668' => 'pgr', 'PGSC0003DMG400007122' => 'stu', 'PGSC0003DMG400016478' => 'stu', 'PGSC0003DMG400025374' => 'stu', 'PGSC0003DMG400026536' => 'stu', 'Phvul.003G079600' => 'pvu', 'Phvul.005G115600' => 'pvu', 'Phvul.005G127100' => 'pvu', 'Phvul.006G149500' => 'pvu', 'Phvul.006G149600' => 'pvu', 'Phvul.011G071800' => 'pvu', 'Phvul.011G090400' => 'pvu', 'Potri.004G013400' => 'ptr', 'Potri.004G188100' => 'ptr', 'Potri.008G195500' => 'ptr', 'Potri.009G148800' => 'ptr', 'Potri.011G004700' => 'ptr', 'Pp3c17_22810' => 'ppa', 'Pp3c18_4480' => 'ppa', 'Pp3c19_13030' => 'ppa', 'Pp3c1_33620' => 'ppa', 'Pp3c2_9380' => 'ppa', 'PRCOL_00001023' => 'pco', 'Prupe.3G216300' => 'ppe', 'Prupe.4G019500' => 'ppe', 'Prupe.6G092500' => 'ppe', 'Prupe.6G119200' => 'ppe', 'Psat0s1945g0080' => 'psa', 'Psat0s4167g0040' => 'psa', 'Psat1g185800' => 'psa', 'Psat4g006440' => 'psa', 'Psat4g006480' => 'psa', 'Psat4g168120' => 'psa', 'Psat5g255680' => 'psa', 'Psat5g261760' => 'psa', 'Psat7g222120' => 'psa', 'PSO063G7252' => 'pso', 'PSO170G4778' => 'pso', 'PSO210G2249' => 'pso', 'PSO339G2411' => 'pso', 'PSO339G2457' => 'pso', 'PSO339G2854' => 'pso', 'PSO339G4288' => 'pso', 'PSO339G4615' => 'pso', 'PSO384G2796' => 'pso', 'PSO384G2940' => 'pso', 'PSO384G4227' => 'pso', 'PSO478G1425' => 'pso', 'PSO541G3863' => 'pso', 'PSO675G0507' => 'pso', 'PSO782G0338' => 'pso', 'PSO832G0644' => 'pso', 'QL01p013664' => 'qlo', 'QL01p036598' => 'qlo', 'QL05p072984' => 'qlo', 'QL08p005768' => 'qlo', 'QL08p032743' => 'qlo', 'QL93p0073_0439' => 'qlo', 'QL93p0073_0444' => 'qlo', 'RcHm_v2.0_Chr5g0002851' => 'rch', 'RcHm_v2.0_Chr5g0055201' => 'rch', 'RcHm_v2.0_Chr5g0061191' => 'rch', 'RcHm_v2.0_Chr7g0203231' => 'rch', 'Rhsim01G0208100' => 'rsi', 'Rhsim01G0208200' => 'rsi', 'Rhsim02G0106500' => 'rsi', 'Rhsim03G0107900' => 'rsi', 'Rhsim06G0163400' => 'rsi', 'Rhsim13G0105200' => 'rsi', 'Sabra04G0006300' => 'sbr', 'Sabra04G0127000' => 'sbr', 'Sabra08G0148700' => 'sbr', 'Sabra09G0117400' => 'sbr', 'SalBow1G3326' => 'sbo', 'SalBow3G3228' => 'sbo', 'SalBow6G1634' => 'sbo', 'SalBow6G3603' => 'sbo', 'SalBow6G5266' => 'sbo', 'SalBow7G2265' => 'sbo', 'SalBow8G0850' => 'sbo', 'SalBow8G2592' => 'sbo', 'Sc05g0009240' => 'sci', 'Sc12g0002300' => 'sci', 'Sc21g0000100' => 'sci', 'Sc21g0004720' => 'sci', 'Sed0002949' => 'sed', 'Sed0004114' => 'sed', 'Sed0004306' => 'sed', 'Sed0006172' => 'sed', 'Sed0008413' => 'sed', 'Sed0013809' => 'sed', 'Sed0019556' => 'sed', 'SEGI_03570' => 'sgi', 'SEGI_07859' => 'sgi', 'SEGI_15042' => 'sgi', 'SEGI_16263' => 'sgi', 'SEGI_16552' => 'sgi', 'SEGI_24331' => 'sgi', 'SEGI_27316' => 'sgi', 'SEGI_29521' => 'sgi', 'SEGI_41342' => 'sgi', 'SGA_v2.0_scaffold27G11617' => 'sas', 'SGA_v2.0_scaffold316G48428' => 'sas', 'SGA_v2.0_scaffold49G18261' => 'sas', 'SGA_v2.0_scaffold7G03831' => 'sas', 'SGA_v2.0_scaffold93G28359' => 'sas', 'SHI02210' => 'shi', 'SHI06028' => 'shi', 'SHI06321' => 'shi', 'SMO111G0012' => 'smo', 'SMO228G0080' => 'smo', 'SMO356G0756' => 'smo', 'Solyc02g080620.3' => 'sly', 'Solyc06g074530.1' => 'sly', 'Solyc11g066890.1' => 'sly', 'Solyc11g072520.3' => 'sly', 'Sopen02g025330' => 'spe', 'Sopen06g031000' => 'spe', 'Sopen09g008240' => 'spe', 'Sopen09g025210' => 'spe', 'Sopen11g026600' => 'spe', 'Sopen11g030170' => 'spe', 'Sp1g10420' => 'spa', 'Sp3g06570' => 'spa', 'Sp4g10660' => 'spa', 'Sp5g16460' => 'spa', 'Sp6g22710' => 'spa', 'TAR365G0112' => 'tar', 'TAR369G0717' => 'tar', 'TAR374G0976' => 'tar', 'TAR623G1128' => 'tar', 'TAR626G1937' => 'tar', 'TAR627G0123' => 'tar', 'TAR628G0305' => 'tar', 'TAR636G1176' => 'tar', 'TAR636G2442' => 'tar', 'THA.LOC104800556' => 'tha', 'THA.LOC104809501' => 'tha', 'THA.LOC104815126' => 'tha', 'THA.LOC104815732' => 'tha', 'THA.LOC104823528' => 'tha', 'Thecc.02G365600' => 'tca', 'Thecc.06G222300' => 'tca', 'Thecc.09G261800' => 'tca', 'Thecc.09G291400' => 'tca', 'Thhalv10003028m.g' => 'esa', 'Thhalv10007886m.g' => 'esa', 'Thhalv10016085m.g' => 'esa', 'Thhalv10016681m.g' => 'esa', 'Thhalv10020951m.g' => 'esa', 'TPR.G15598' => 'tpr', 'TPR.G29305' => 'tpr', 'TPR.G32395' => 'tpr', 'TPR.G36998' => 'tpr', 'TPR.G4227' => 'tpr', 'TWI18G1433' => 'twi', 'TWI31G0755' => 'twi', 'TWI38G0912' => 'twi', 'TWI75G1097' => 'twi', 'TWI75G1619' => 'twi', 'TWI79G1336' => 'twi', 'unitig_0.g943' => 'ugi', 'unitig_0.g944' => 'ugi', 'unitig_22.g6646' => 'ugi', 'unitig_37.g12681' => 'ugi', 'unitig_8.g3290' => 'ugi', 'vmacro03278' => 'vma', 'vmacro12197' => 'vma', 'vmacro14478' => 'vma', 'vmacro15787' => 'vma', 'vmacro15789' => 'vma', 'vmacro15790' => 'vma', 'vmacro15806' => 'vma', 'vmacro22907' => 'vma', 'vmacro22908' => 'vma', 'vmacro22909' => 'vma', 'vmacro23108' => 'vma', 'VMungo0540G0540' => 'vmu', 'VMungo0540G2468' => 'vmu', 'VMungo1080G0390' => 'vmu', 'VMungo1080G1165' => 'vmu', 'VMungo1127G0170' => 'vmu', 'VMungo1127G2099' => 'vmu', 'VMungo1215G3013' => 'vmu', 'Zm00001eb013110' => 'zma', 'Zm00001eb084260' => 'zma', 'Zm00001eb096110' => 'zma', 'Zm00001eb217510' => 'zma', 'Zm00001eb322550' => 'zma', 'Zm00001eb390770' => 'zma', 'Zm00001eb397170' => 'zma', 'Zm00001eb404610' => 'zma', 'Zm00001eb421790' => 'zma' ) $gf_id = 'HOM05D000911' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000911' ) $data_identifier = 'HOM05D000911' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 16, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 5, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 6, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 8, 'nnu' => (int) 16, 'oeu' => (int) 8, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 5, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 16, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421790' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000911', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27780' => 'bna', 'A03p35380' => 'bna', 'A04p21160' => 'bna', 'A05p40570' => 'bna', 'A06p26900' => 'bna', 'A08p33230' => 'bna', 'A09p65960' => 'bna', 'A10p18290' => 'bna', 'Aa31LG1G12990' => 'aar', 'Aa31LG1G2980' => 'aar', 'Aa31LG4G14320' => 'aar', 'Aa31LG7G11800' => 'aar', 'Aa31sc36G50' => 'aar', 'Aa31sc36G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3721' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5459' => 'aag', 'Actinidia03028' => 'ach', 'Actinidia03753' => 'ach', 'Actinidia04187' => 'ach', 'Actinidia05509' => 'ach', 'Actinidia24180' => 'ach', 'Actinidia26906' => 'ach', 'Actinidia37097' => 'ach', 'Actinidia38249' => 'ach', 'Ah.01g003470' => 'amhyb', 'Ah.01g004580' => 'amhyb', 'Ah.01g014850' => 'amhyb', 'Ah.01g016830' => 'amhyb', 'Ah.14g088000' => 'amhyb', 'AL1G22980' => 'aly', 'AL3G18990' => 'aly', 'AL4G22440' => 'aly', 'AL4G33180' => 'aly', 'AL5G22920' => 'aly', 'AL6G33660' => 'aly', 'AL8G20720' => 'aly', 'Aqoxy1G00935' => 'aox', 'Aqoxy1G02094' => 'aox', 'Aqoxy2G01239' => 'aox', 'Aqoxy4G01870' => 'aox', 'Aqoxy7G00450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.36ZVTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71EM27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5D6C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH3WRE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3NCM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RIM768' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YB5YRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z36GDV' => 'arhy', 'AT1G08250' => 'ath', 'AT1G11790' => 'ath', 'AT2G27820' => 'ath', 'AT3G07630' => 'ath', 'AT3G44720' => 'ath', 'AT5G22630' => 'ath', 'ATR0693G304' => 'atr', 'ATR0794G109' => 'atr', 'ATR0820G120' => 'atr', 'ATR1159G064' => 'atr', 'Atru.chr10.2239' => 'acertr', 'Atru.chr3.3371' => 'acertr', 'Atru.chr6.3202' => 'acertr', 'AUR62006499' => 'cqu', 'AUR62012718' => 'cqu', 'AUR62021938' => 'cqu', 'AUR62023932' => 'cqu', 'AUR62025034' => 'cqu', 'AUR62025035' => 'cqu', 'AUR62038307' => 'cqu', 'AUR62043466' => 'cqu', 'BcaB02g10748' => 'bca', 'BcaB03g13231' => 'bca', 'BcaB03g14689' => 'bca', 'BcaB05g22716' => 'bca', 'BcaB06g28172' => 'bca', 'BcaB08g36413' => 'bca', 'BcaC01g02186' => 'bca', 'BcaC01g04272' => 'bca', 'BcaC02g08080' => 'bca', 'BcaC02g08227' => 'bca', 'BcaC03g13901' => 'bca', 'BcaC04g19593' => 'bca', 'BcaC04g20874' => 'bca', 'BcaC05g29557' => 'bca', 'BcaC06g35505' => 'bca', 'BcaC07g41954' => 'bca', 'BcaC07g41955' => 'bca', 'BcaC07g41956' => 'bca', 'BcaC07g42519' => 'bca', 'BcaC07g42520' => 'bca', 'BcaC07g42523' => 'bca', 'BcaC07g42524' => 'bca', 'BcaC07g42525' => 'bca', 'BcaC08g47480' => 'bca', 'BcaC08g47481' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00530' => 'bna', 'BolC2t07178H' => 'bol', 'BolC3t16567H' => 'bol', 'BolC4t27234H' => 'bol', 'BolC5t29728H' => 'bol', 'BolC5t34622H' => 'bol', 'BolC6t40321H' => 'bol', 'BolC7t42028H' => 'bol', 'BolC8t49125H' => 'bol', 'BolC8t52538H' => 'bol', 'BolC8t52539H' => 'bol', 'BolC9t56681H' => 'bol', 'BolC9t58266H' => 'bol', 'BolSC21t60294H' => 'bol', 'BraA02t05670Z' => 'bra', 'BraA03t12716Z' => 'bra', 'BraA04t17685Z' => 'bra', 'BraA05t22788Z' => 'bra', 'BraA06t24032Z' => 'bra', 'BraA06t25625Z' => 'bra', 'BraA07t27930Z' => 'bra', 'BraA08t35242Z' => 'bra', 'BraA09t38609Z' => 'bra', 'BraA10t43905Z' => 'bra', 'C02p11060' => 'bna', 'C03p42990' => 'bna', 'C03p67310' => 'bna', 'C04p56990' => 'bna', 'C04p58660' => 'bna', 'C05p09890' => 'bna', 'C05p59680' => 'bna', 'C06p19830' => 'bna', 'C06p53040' => 'bna', 'C07p15230' => 'bna', 'C08p50070' => 'bna', 'C08p50090' => 'bna', 'C09p38330' => 'bna', 'C09p53940' => 'bna', 'CAN.G1014.1' => 'can', 'CAN.G644.30' => 'can', 'CAN.G84.47' => 'can', 'CAN.G919.8' => 'can', 'CANSAT54G0113' => 'cansat', 'CANSAT54G1286' => 'cansat', 'CANSAT64G1020' => 'cansat', 'CARHR008080' => 'chi', 'CARHR008090' => 'chi', 'CARHR012130' => 'chi', 'CARHR038390' => 'chi', 'CARHR082330' => 'chi', 'CARHR120520' => 'chi', 'CARHR151470' => 'chi', 'CARHR190950' => 'chi', 'Carub.0001s0760' => 'cru', 'Carub.0001s1146' => 'cru', 'Carub.0003s0721' => 'cru', 'Carub.0004s0858' => 'cru', 'Carub.0005s1040' => 'cru', 'Carub.0006s2035' => 'cru', 'Carub.0015s0005' => 'cru', 'Ca_01607_v3' => 'car', 'Ca_01677_v3' => 'car', 'Ca_06087_v3' => 'car', 'Ca_19238_v3' => 'car', 'Ca_19373_v3' => 'car', 'Ca_21079_v3' => 'car', 'CBR_g54016' => 'cbr', 'CBR_g54018' => 'cbr', 'CBR_g54020' => 'cbr', 'Cc01_g09780' => 'ccan', 'Cc01_g11680' => 'ccan', 'Cc02_g15610' => 'ccan', 'Cc05_g04350' => 'ccan', 'Cc09_g01580' => 'ccan', 'CDE01G0795' => 'cde', 'CDE02G2024' => 'cde', 'CDE02G2260' => 'cde', 'CDE02G4561' => 'cde', 'CDE05G2733' => 'cde', 'CDE05G3422' => 'cde', 'CDE06G2003' => 'cde', 'CDE08G0576' => 'cde', 'CDE09G0048' => 'cde', 'CDE11G0805' => 'cde', 'Cfa003644' => 'cfa', 'Cfa006290' => 'cfa', 'Cfa010080' => 'cfa', 'Cfa011376' => 'cfa', 'Cfa011576' => 'cfa', 'Cfa011577' => 'cfa', 'Cfa014389' => 'cfa', 'Ciclev10006044m.g' => 'ccl', 'Ciclev10006954m.g' => 'ccl', 'Ciclev10015131m.g' => 'ccl', 'Ciclev10015580m.g' => 'ccl', 'Ciclev10028359m.g' => 'ccl', 'Ciclev10028573m.g' => 'ccl', 'CiPaw.03G159300' => 'cil', 'CiPaw.04G115100' => 'cil', 'CiPaw.09G092800' => 'cil', 'CiPaw.10G071800' => 'cil', 'CiPaw.13G105800' => 'cil', 'CiPaw.13G141000' => 'cil', 'CiPaw.14G103400' => 'cil', 'ClCG01G012700' => 'cla', 'ClCG01G012720' => 'cla', 'ClCG01G021920' => 'cla', 'ClCG02G008870' => 'cla', 'ClCG02G020840' => 'cla', 'ClCG02G021930' => 'cla', 'COL.COLO4_19302' => 'col', 'COL.COLO4_25262' => 'col', 'COL.COLO4_31788' => 'col', 'Cpa.g.c34684' => 'cpa', 'Cpa.g.c36520.1' => 'cpa', 'Cpa.g.c45626' => 'cpa', 'Cpa.g.sc121.17' => 'cpa', 'Cpa.g.sc13.22' => 'cpa', 'Cpa.g.sc87.88' => 'cpa', 'Cre06.g261800' => 'cre', 'CsaV3_1G014500' => 'csa', 'CsaV3_1G014510' => 'csa', 'CsaV3_2G034880' => 'csa', 'CsaV3_6G014760' => 'csa', 'CsaV3_6G021500' => 'csa', 'CsaV3_6G048980' => 'csa', 'CSS0002511' => 'camsi', 'CSS0007556' => 'camsi', 'CSS0008532' => 'camsi', 'CSS0009709' => 'camsi', 'CSS0010486' => 'camsi', 'CSS0016768' => 'camsi', 'CSS0023512' => 'camsi', 'CSS0025341' => 'camsi', 'CSS0027999' => 'camsi', 'CSS0028944' => 'camsi', 'CSS0032292' => 'camsi', 'CSS0032464' => 'camsi', 'CSS0037153' => 'camsi', 'CSS0039256' => 'camsi', 'CSS0048392' => 'camsi', 'CSS0050458' => 'camsi', 'DCAR_004224' => 'dca', 'DCAR_006147' => 'dca', 'DCAR_006465' => 'dca', 'DCAR_008159' => 'dca', 'DCAR_012164' => 'dca', 'DCAR_019764' => 'dca', 'Dinv05418' => 'din', 'Dinv10839' => 'din', 'Dinv12521' => 'din', 'Dinv13900' => 'din', 'Dinv29426' => 'din', 'Duzib150G0263' => 'dzi', 'Duzib168G1178' => 'dzi', 'Duzib168G1924' => 'dzi', 'Duzib170G0299' => 'dzi', 'Duzib170G0813' => 'dzi', 'Duzib235G1128' => 'dzi', 'Duzib248G1060' => 'dzi', 'ECA232G1910' => 'eca', 'ECA233G4621' => 'eca', 'ECA238G1216' => 'eca', 'ECA238G1784' => 'eca', 'ECA248G1242' => 'eca', 'EL10Ac8g20071' => 'bvu', 'EL10Ac9g21086' => 'bvu', 'EL10Ac9g22407' => 'bvu', 'EL10Ac9g22412' => 'bvu', 'Eucgr.A01119' => 'egr', 'Eucgr.E04043' => 'egr', 'Eucgr.J00428' => 'egr', 'Eucgr.J00958' => 'egr', 'FAN11G3091' => 'fan', 'FAN11G3651' => 'fan', 'FAN16G2566' => 'fan', 'FAN21G3155' => 'fan', 'FAN21G3400' => 'fan', 'FAN21G3543' => 'fan', 'FAN25G0234' => 'fan', 'FAN25G1422' => 'fan', 'FAN25G3392' => 'fan', 'FvH4_3g01940' => 'fve', 'FvH4_3g29870' => 'fve', 'FvH4_3g33680' => 'fve', 'Glyma.09G004200' => 'gma', 'Glyma.11G151288' => 'gma', 'Glyma.11G189100' => 'gma', 'Glyma.12G072500' => 'gma', 'Glyma.12G085500' => 'gma', 'Glyma.12G181800' => 'gma', 'Glyma.12G193000' => 'gma', 'Glyma.13G309300' => 'gma', 'Glyma.13G319000' => 'gma', 'Glyma.17G012600' => 'gma', 'Gohir.A06G148600' => 'ghi', 'Gohir.A07G115800' => 'ghi', 'Gohir.A08G003600' => 'ghi', 'Gohir.A09G093300' => 'ghi', 'Gohir.A09G105400' => 'ghi', 'Gohir.A09G105500' => 'ghi', 'Gohir.D06G154600' => 'ghi', 'Gohir.D07G120200' => 'ghi', 'Gohir.D08G013900' => 'ghi', 'Gohir.D09G093100' => 'ghi', 'Gohir.D09G102200' => 'ghi', 'Gohir.D09G102300' => 'ghi', 'Gorai.001G129400' => 'gra', 'Gorai.004G008200' => 'gra', 'Gorai.006G109800' => 'gra', 'Gorai.006G119500' => 'gra', 'Gorai.006G121300' => 'gra', 'Gorai.010G180700' => 'gra', 'GSVIVG01012716001' => 'vvi', 'GSVIVG01025118001' => 'vvi', 'GSVIVG01030439001' => 'vvi', 'GSVIVG01031397001' => 'vvi', 'HanXRQChr01g0004201' => 'han', 'HanXRQChr02g0054941' => 'han', 'HanXRQChr05g0141811' => 'han', 'HanXRQChr07g0197751' => 'han', 'HanXRQChr11g0346691' => 'han', 'HanXRQChr13g0396971' => 'han', 'HanXRQChr14g0432951' => 'han', 'HanXRQChr14g0452001' => 'han', 'HanXRQChr15g0496681' => 'han', 'HanXRQChr17g0557491' => 'han', 'HanXRQChr17g0557501' => 'han', 'Haze_06809' => 'cav', 'Haze_12852' => 'cav', 'Haze_15850' => 'cav', 'Haze_23446' => 'cav', 'Haze_23942' => 'cav', 'Haze_23943' => 'cav', 'Hma1.2p1_0091F.1_g046450' => 'hma', 'Hma1.2p1_0128F.1_g059910' => 'hma', 'Hma1.2p1_0249F.1_g102260' => 'hma', 'Hma1.2p1_0453F.1_g156190' => 'hma', 'Hma1.2p1_0695F.1_g204380' => 'hma', 'Hma1.2p1_0749F.1_g212650' => 'hma', 'Hma1.2p1_2156F.1_g315420' => 'hma', 'Hma1.2p1_2686F.1_g326940' => 'hma', 'HPP92_006428' => 'vpl', 'HPP92_012069' => 'vpl', 'HPP92_014129' => 'vpl', 'HPP92_014133' => 'vpl', 'HPP92_017315' => 'vpl', 'HPP92_026445' => 'vpl', 'HPP92_026446' => 'vpl', 'Hund00774' => 'sun', 'Hund07682' => 'sun', 'Hund21413' => 'sun', 'Hund23462' => 'sun', 'Hund23463' => 'sun', 'Lalb_Chr03g0027911' => 'lal', 'Lalb_Chr13g0304271' => 'lal', 'Lalb_Chr19g0137471' => 'lal', 'Lalb_Chr22g0350651' => 'lal', 'Lalb_Chr24g0395151' => 'lal', 'Lj1A1231T40' => 'lonja', 'Lj1A221T48' => 'lonja', 'Lj1C924T12' => 'lonja', 'Lj2C993G6' => 'lonja', 'Lj3g0005790' => 'lja', 'Lj3g0015432' => 'lja', 'Lj3g0017722' => 'lja', 'Lj3g0018497' => 'lja', 'Lj4g0025071' => 'lja', 'Lsat_1_v5_gn_1_129680' => 'lsa', 'Lsat_1_v5_gn_2_25321' => 'lsa', 'Lsat_1_v5_gn_2_95461' => 'lsa', 'Lsat_1_v5_gn_4_159620' => 'lsa', 'Lsat_1_v5_gn_6_41301' => 'lsa', 'Lsat_1_v5_gn_6_74660' => 'lsa', 'Lsat_1_v5_gn_7_11520' => 'lsa', 'Lsat_1_v5_gn_9_67680' => 'lsa', 'Manes.04G008300' => 'mes', 'Manes.04G008400' => 'mes', 'Manes.04G026500' => 'mes', 'Manes.10G135300' => 'mes', 'Manes.11G157300' => 'mes', 'Manes.12G074000' => 'mes', 'Manes.16G006200' => 'mes', 'Manes.17G026400' => 'mes', 'Mapoly0024s0086' => 'mpo', 'Mapoly0024s0087' => 'mpo', 'Mapoly0071s0057' => 'mpo', 'Mapoly0204s0012' => 'mpo', 'MBI04_g37681_MAGBIO' => 'mbi', 'MBI05_g17779_MAGBIO' => 'mbi', 'MBI12_g31184_MAGBIO' => 'mbi', 'MBI17_g11083_MAGBIO' => 'mbi', 'MBI18_g03883_MAGBIO' => 'mbi', 'MBI18_g28940_MAGBIO' => 'mbi', 'MCO01G690' => 'mco', 'MD03G1109900' => 'mdo', 'MD03G1134800' => 'mdo', 'MD05G1348000' => 'mdo', 'MD10G1322400' => 'mdo', 'MD11G1123300' => 'mdo', 'MD11G1157600' => 'mdo', 'Medtr2g084875' => 'mtr', 'Medtr2g088130' => 'mtr', 'Medtr4g055310' => 'mtr', 'Medtr4g061070' => 'mtr', 'Medtr4g132250' => 'mtr', 'MELO3C004795.2' => 'cme', 'MELO3C004797.2' => 'cme', 'MELO3C007396.2' => 'cme', 'MELO3C019277.2' => 'cme', 'MELO3C021449.2' => 'cme', 'MELO3C025736.2' => 'cme', 'Migut.D02175' => 'egut', 'Migut.H01573' => 'egut', 'Migut.M01327' => 'egut', 'Migut.N02513' => 'egut', 'MSTRG.14638' => 'ama', 'MSTRG.18632' => 'ama', 'MSTRG.7203' => 'ama', 'Nitab4.5_0000533g0140' => 'nta', 'Nitab4.5_0000888g0150' => 'nta', 'Nitab4.5_0001453g0040' => 'nta', 'Nitab4.5_0002827g0090' => 'nta', 'Nitab4.5_0003082g0040' => 'nta', 'Nitab4.5_0007799g0040' => 'nta', 'Nitab4.5_0008983g0010' => 'nta', 'Nitab4.5_0009017g0020' => 'nta', 'Nn1g02132' => 'nnu', 'Nn1g03492' => 'nnu', 'Nn1g03493' => 'nnu', 'Nn1g03494' => 'nnu', 'Nn1g07164' => 'nnu', 'Nn1g07291' => 'nnu', 'Nn2g10655' => 'nnu', 'Nn2g11652' => 'nnu', 'Nn2g14008' => 'nnu', 'Nn3g17476' => 'nnu', 'Nn3g17477' => 'nnu', 'Nn4g22370' => 'nnu', 'Nn4g25255' => 'nnu', 'Nn5g27755' => 'nnu', 'Nn6g34260' => 'nnu', 'Nn6g35041' => 'nnu', 'Oeu005924.1' => 'oeu', 'Oeu008383.1' => 'oeu', 'Oeu014928.1' => 'oeu', 'Oeu019889.1' => 'oeu', 'Oeu022271.1' => 'oeu', 'Oeu025271.1' => 'oeu', 'Oeu036302.1' => 'oeu', 'Oeu044100.1' => 'oeu', 'Os01g0528300' => 'osa', 'Os03g0286200' => 'osa', 'Os04g0406600' => 'osa', 'Os07g0512000' => 'osa', 'Os07g0694600' => 'osa', 'Os08g0411000' => 'osa', 'Os09g0565700' => 'osa', 'Os09g0566050' => 'osa', 'Os10g0523700' => 'osa', 'Peaxi162Scf00002g00514' => 'pax', 'Peaxi162Scf00047g01817' => 'pax', 'Peaxi162Scf00114g00001' => 'pax', 'Peaxi162Scf00147g00613' => 'pax', 'Peaxi162Scf00389g00425' => 'pax', 'PGR042G1139' => 'pgr', 'PGR042G3273' => 'pgr', 'PGR102G2180' => 'pgr', 'PGR119G0234' => 'pgr', 'PGR119G0668' => 'pgr', 'PGSC0003DMG400007122' => 'stu', 'PGSC0003DMG400016478' => 'stu', 'PGSC0003DMG400025374' => 'stu', 'PGSC0003DMG400026536' => 'stu', 'Phvul.003G079600' => 'pvu', 'Phvul.005G115600' => 'pvu', 'Phvul.005G127100' => 'pvu', 'Phvul.006G149500' => 'pvu', 'Phvul.006G149600' => 'pvu', 'Phvul.011G071800' => 'pvu', 'Phvul.011G090400' => 'pvu', 'Potri.004G013400' => 'ptr', 'Potri.004G188100' => 'ptr', 'Potri.008G195500' => 'ptr', 'Potri.009G148800' => 'ptr', 'Potri.011G004700' => 'ptr', 'Pp3c17_22810' => 'ppa', 'Pp3c18_4480' => 'ppa', 'Pp3c19_13030' => 'ppa', 'Pp3c1_33620' => 'ppa', 'Pp3c2_9380' => 'ppa', 'PRCOL_00001023' => 'pco', 'Prupe.3G216300' => 'ppe', 'Prupe.4G019500' => 'ppe', 'Prupe.6G092500' => 'ppe', 'Prupe.6G119200' => 'ppe', 'Psat0s1945g0080' => 'psa', 'Psat0s4167g0040' => 'psa', 'Psat1g185800' => 'psa', 'Psat4g006440' => 'psa', 'Psat4g006480' => 'psa', 'Psat4g168120' => 'psa', 'Psat5g255680' => 'psa', 'Psat5g261760' => 'psa', 'Psat7g222120' => 'psa', 'PSO063G7252' => 'pso', 'PSO170G4778' => 'pso', 'PSO210G2249' => 'pso', 'PSO339G2411' => 'pso', 'PSO339G2457' => 'pso', 'PSO339G2854' => 'pso', 'PSO339G4288' => 'pso', 'PSO339G4615' => 'pso', 'PSO384G2796' => 'pso', 'PSO384G2940' => 'pso', 'PSO384G4227' => 'pso', 'PSO478G1425' => 'pso', 'PSO541G3863' => 'pso', 'PSO675G0507' => 'pso', 'PSO782G0338' => 'pso', 'PSO832G0644' => 'pso', 'QL01p013664' => 'qlo', 'QL01p036598' => 'qlo', 'QL05p072984' => 'qlo', 'QL08p005768' => 'qlo', 'QL08p032743' => 'qlo', 'QL93p0073_0439' => 'qlo', 'QL93p0073_0444' => 'qlo', 'RcHm_v2.0_Chr5g0002851' => 'rch', 'RcHm_v2.0_Chr5g0055201' => 'rch', 'RcHm_v2.0_Chr5g0061191' => 'rch', 'RcHm_v2.0_Chr7g0203231' => 'rch', 'Rhsim01G0208100' => 'rsi', 'Rhsim01G0208200' => 'rsi', 'Rhsim02G0106500' => 'rsi', 'Rhsim03G0107900' => 'rsi', 'Rhsim06G0163400' => 'rsi', 'Rhsim13G0105200' => 'rsi', 'Sabra04G0006300' => 'sbr', 'Sabra04G0127000' => 'sbr', 'Sabra08G0148700' => 'sbr', 'Sabra09G0117400' => 'sbr', 'SalBow1G3326' => 'sbo', 'SalBow3G3228' => 'sbo', 'SalBow6G1634' => 'sbo', 'SalBow6G3603' => 'sbo', 'SalBow6G5266' => 'sbo', 'SalBow7G2265' => 'sbo', 'SalBow8G0850' => 'sbo', 'SalBow8G2592' => 'sbo', 'Sc05g0009240' => 'sci', 'Sc12g0002300' => 'sci', 'Sc21g0000100' => 'sci', 'Sc21g0004720' => 'sci', 'Sed0002949' => 'sed', 'Sed0004114' => 'sed', 'Sed0004306' => 'sed', 'Sed0006172' => 'sed', 'Sed0008413' => 'sed', 'Sed0013809' => 'sed', 'Sed0019556' => 'sed', 'SEGI_03570' => 'sgi', 'SEGI_07859' => 'sgi', 'SEGI_15042' => 'sgi', 'SEGI_16263' => 'sgi', 'SEGI_16552' => 'sgi', 'SEGI_24331' => 'sgi', 'SEGI_27316' => 'sgi', 'SEGI_29521' => 'sgi', 'SEGI_41342' => 'sgi', 'SGA_v2.0_scaffold27G11617' => 'sas', 'SGA_v2.0_scaffold316G48428' => 'sas', 'SGA_v2.0_scaffold49G18261' => 'sas', 'SGA_v2.0_scaffold7G03831' => 'sas', 'SGA_v2.0_scaffold93G28359' => 'sas', 'SHI02210' => 'shi', 'SHI06028' => 'shi', 'SHI06321' => 'shi', 'SMO111G0012' => 'smo', 'SMO228G0080' => 'smo', 'SMO356G0756' => 'smo', 'Solyc02g080620.3' => 'sly', 'Solyc06g074530.1' => 'sly', 'Solyc11g066890.1' => 'sly', 'Solyc11g072520.3' => 'sly', 'Sopen02g025330' => 'spe', 'Sopen06g031000' => 'spe', 'Sopen09g008240' => 'spe', 'Sopen09g025210' => 'spe', 'Sopen11g026600' => 'spe', 'Sopen11g030170' => 'spe', 'Sp1g10420' => 'spa', 'Sp3g06570' => 'spa', 'Sp4g10660' => 'spa', 'Sp5g16460' => 'spa', 'Sp6g22710' => 'spa', 'TAR365G0112' => 'tar', 'TAR369G0717' => 'tar', 'TAR374G0976' => 'tar', 'TAR623G1128' => 'tar', 'TAR626G1937' => 'tar', 'TAR627G0123' => 'tar', 'TAR628G0305' => 'tar', 'TAR636G1176' => 'tar', 'TAR636G2442' => 'tar', 'THA.LOC104800556' => 'tha', 'THA.LOC104809501' => 'tha', 'THA.LOC104815126' => 'tha', 'THA.LOC104815732' => 'tha', 'THA.LOC104823528' => 'tha', 'Thecc.02G365600' => 'tca', 'Thecc.06G222300' => 'tca', 'Thecc.09G261800' => 'tca', 'Thecc.09G291400' => 'tca', 'Thhalv10003028m.g' => 'esa', 'Thhalv10007886m.g' => 'esa', 'Thhalv10016085m.g' => 'esa', 'Thhalv10016681m.g' => 'esa', 'Thhalv10020951m.g' => 'esa', 'TPR.G15598' => 'tpr', 'TPR.G29305' => 'tpr', 'TPR.G32395' => 'tpr', 'TPR.G36998' => 'tpr', 'TPR.G4227' => 'tpr', 'TWI18G1433' => 'twi', 'TWI31G0755' => 'twi', 'TWI38G0912' => 'twi', 'TWI75G1097' => 'twi', 'TWI75G1619' => 'twi', 'TWI79G1336' => 'twi', 'unitig_0.g943' => 'ugi', 'unitig_0.g944' => 'ugi', 'unitig_22.g6646' => 'ugi', 'unitig_37.g12681' => 'ugi', 'unitig_8.g3290' => 'ugi', 'vmacro03278' => 'vma', 'vmacro12197' => 'vma', 'vmacro14478' => 'vma', 'vmacro15787' => 'vma', 'vmacro15789' => 'vma', 'vmacro15790' => 'vma', 'vmacro15806' => 'vma', 'vmacro22907' => 'vma', 'vmacro22908' => 'vma', 'vmacro22909' => 'vma', 'vmacro23108' => 'vma', 'VMungo0540G0540' => 'vmu', 'VMungo0540G2468' => 'vmu', 'VMungo1080G0390' => 'vmu', 'VMungo1080G1165' => 'vmu', 'VMungo1127G0170' => 'vmu', 'VMungo1127G2099' => 'vmu', 'VMungo1215G3013' => 'vmu', 'Zm00001eb013110' => 'zma', 'Zm00001eb084260' => 'zma', 'Zm00001eb096110' => 'zma', 'Zm00001eb217510' => 'zma', 'Zm00001eb322550' => 'zma', 'Zm00001eb390770' => 'zma', 'Zm00001eb397170' => 'zma', 'Zm00001eb404610' => 'zma', 'Zm00001eb421790' => 'zma' ), 'gf_id' => 'HOM05D000911', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000911' ), 'data_identifier' => 'HOM05D000911', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000911', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27780' => 'bna', 'A03p35380' => 'bna', 'A04p21160' => 'bna', 'A05p40570' => 'bna', 'A06p26900' => 'bna', 'A08p33230' => 'bna', 'A09p65960' => 'bna', 'A10p18290' => 'bna', 'Aa31LG1G12990' => 'aar', 'Aa31LG1G2980' => 'aar', 'Aa31LG4G14320' => 'aar', 'Aa31LG7G11800' => 'aar', 'Aa31sc36G50' => 'aar', 'Aa31sc36G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3721' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5459' => 'aag', 'Actinidia03028' => 'ach', 'Actinidia03753' => 'ach', 'Actinidia04187' => 'ach', 'Actinidia05509' => 'ach', 'Actinidia24180' => 'ach', 'Actinidia26906' => 'ach', 'Actinidia37097' => 'ach', 'Actinidia38249' => 'ach', 'Ah.01g003470' => 'amhyb', 'Ah.01g004580' => 'amhyb', 'Ah.01g014850' => 'amhyb', 'Ah.01g016830' => 'amhyb', 'Ah.14g088000' => 'amhyb', 'AL1G22980' => 'aly', 'AL3G18990' => 'aly', 'AL4G22440' => 'aly', 'AL4G33180' => 'aly', 'AL5G22920' => 'aly', 'AL6G33660' => 'aly', 'AL8G20720' => 'aly', 'Aqoxy1G00935' => 'aox', 'Aqoxy1G02094' => 'aox', 'Aqoxy2G01239' => 'aox', 'Aqoxy4G01870' => 'aox', 'Aqoxy7G00450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.36ZVTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71EM27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5D6C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH3WRE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3NCM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RIM768' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YB5YRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z36GDV' => 'arhy', 'AT1G08250' => 'ath', 'AT1G11790' => 'ath', 'AT2G27820' => 'ath', 'AT3G07630' => 'ath', 'AT3G44720' => 'ath', 'AT5G22630' => 'ath', 'ATR0693G304' => 'atr', 'ATR0794G109' => 'atr', 'ATR0820G120' => 'atr', 'ATR1159G064' => 'atr', 'Atru.chr10.2239' => 'acertr', 'Atru.chr3.3371' => 'acertr', 'Atru.chr6.3202' => 'acertr', 'AUR62006499' => 'cqu', 'AUR62012718' => 'cqu', 'AUR62021938' => 'cqu', 'AUR62023932' => 'cqu', 'AUR62025034' => 'cqu', 'AUR62025035' => 'cqu', 'AUR62038307' => 'cqu', 'AUR62043466' => 'cqu', 'BcaB02g10748' => 'bca', 'BcaB03g13231' => 'bca', 'BcaB03g14689' => 'bca', 'BcaB05g22716' => 'bca', 'BcaB06g28172' => 'bca', 'BcaB08g36413' => 'bca', 'BcaC01g02186' => 'bca', 'BcaC01g04272' => 'bca', 'BcaC02g08080' => 'bca', 'BcaC02g08227' => 'bca', 'BcaC03g13901' => 'bca', 'BcaC04g19593' => 'bca', 'BcaC04g20874' => 'bca', 'BcaC05g29557' => 'bca', 'BcaC06g35505' => 'bca', 'BcaC07g41954' => 'bca', 'BcaC07g41955' => 'bca', 'BcaC07g41956' => 'bca', 'BcaC07g42519' => 'bca', 'BcaC07g42520' => 'bca', 'BcaC07g42523' => 'bca', 'BcaC07g42524' => 'bca', 'BcaC07g42525' => 'bca', 'BcaC08g47480' => 'bca', 'BcaC08g47481' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00530' => 'bna', 'BolC2t07178H' => 'bol', 'BolC3t16567H' => 'bol', 'BolC4t27234H' => 'bol', 'BolC5t29728H' => 'bol', 'BolC5t34622H' => 'bol', 'BolC6t40321H' => 'bol', 'BolC7t42028H' => 'bol', 'BolC8t49125H' => 'bol', 'BolC8t52538H' => 'bol', 'BolC8t52539H' => 'bol', 'BolC9t56681H' => 'bol', 'BolC9t58266H' => 'bol', 'BolSC21t60294H' => 'bol', 'BraA02t05670Z' => 'bra', 'BraA03t12716Z' => 'bra', 'BraA04t17685Z' => 'bra', 'BraA05t22788Z' => 'bra', 'BraA06t24032Z' => 'bra', 'BraA06t25625Z' => 'bra', 'BraA07t27930Z' => 'bra', 'BraA08t35242Z' => 'bra', 'BraA09t38609Z' => 'bra', 'BraA10t43905Z' => 'bra', 'C02p11060' => 'bna', 'C03p42990' => 'bna', 'C03p67310' => 'bna', 'C04p56990' => 'bna', 'C04p58660' => 'bna', 'C05p09890' => 'bna', 'C05p59680' => 'bna', 'C06p19830' => 'bna', 'C06p53040' => 'bna', 'C07p15230' => 'bna', 'C08p50070' => 'bna', 'C08p50090' => 'bna', 'C09p38330' => 'bna', 'C09p53940' => 'bna', 'CAN.G1014.1' => 'can', 'CAN.G644.30' => 'can', 'CAN.G84.47' => 'can', 'CAN.G919.8' => 'can', 'CANSAT54G0113' => 'cansat', 'CANSAT54G1286' => 'cansat', 'CANSAT64G1020' => 'cansat', 'CARHR008080' => 'chi', 'CARHR008090' => 'chi', 'CARHR012130' => 'chi', 'CARHR038390' => 'chi', 'CARHR082330' => 'chi', 'CARHR120520' => 'chi', 'CARHR151470' => 'chi', 'CARHR190950' => 'chi', 'Carub.0001s0760' => 'cru', 'Carub.0001s1146' => 'cru', 'Carub.0003s0721' => 'cru', 'Carub.0004s0858' => 'cru', 'Carub.0005s1040' => 'cru', 'Carub.0006s2035' => 'cru', 'Carub.0015s0005' => 'cru', 'Ca_01607_v3' => 'car', 'Ca_01677_v3' => 'car', 'Ca_06087_v3' => 'car', 'Ca_19238_v3' => 'car', 'Ca_19373_v3' => 'car', 'Ca_21079_v3' => 'car', 'CBR_g54016' => 'cbr', 'CBR_g54018' => 'cbr', 'CBR_g54020' => 'cbr', 'Cc01_g09780' => 'ccan', 'Cc01_g11680' => 'ccan', 'Cc02_g15610' => 'ccan', 'Cc05_g04350' => 'ccan', 'Cc09_g01580' => 'ccan', 'CDE01G0795' => 'cde', 'CDE02G2024' => 'cde', 'CDE02G2260' => 'cde', 'CDE02G4561' => 'cde', 'CDE05G2733' => 'cde', 'CDE05G3422' => 'cde', 'CDE06G2003' => 'cde', 'CDE08G0576' => 'cde', 'CDE09G0048' => 'cde', 'CDE11G0805' => 'cde', 'Cfa003644' => 'cfa', 'Cfa006290' => 'cfa', 'Cfa010080' => 'cfa', 'Cfa011376' => 'cfa', 'Cfa011576' => 'cfa', 'Cfa011577' => 'cfa', 'Cfa014389' => 'cfa', 'Ciclev10006044m.g' => 'ccl', 'Ciclev10006954m.g' => 'ccl', 'Ciclev10015131m.g' => 'ccl', 'Ciclev10015580m.g' => 'ccl', 'Ciclev10028359m.g' => 'ccl', 'Ciclev10028573m.g' => 'ccl', 'CiPaw.03G159300' => 'cil', 'CiPaw.04G115100' => 'cil', 'CiPaw.09G092800' => 'cil', 'CiPaw.10G071800' => 'cil', 'CiPaw.13G105800' => 'cil', 'CiPaw.13G141000' => 'cil', 'CiPaw.14G103400' => 'cil', 'ClCG01G012700' => 'cla', 'ClCG01G012720' => 'cla', 'ClCG01G021920' => 'cla', 'ClCG02G008870' => 'cla', 'ClCG02G020840' => 'cla', 'ClCG02G021930' => 'cla', 'COL.COLO4_19302' => 'col', 'COL.COLO4_25262' => 'col', 'COL.COLO4_31788' => 'col', 'Cpa.g.c34684' => 'cpa', 'Cpa.g.c36520.1' => 'cpa', 'Cpa.g.c45626' => 'cpa', 'Cpa.g.sc121.17' => 'cpa', 'Cpa.g.sc13.22' => 'cpa', 'Cpa.g.sc87.88' => 'cpa', 'Cre06.g261800' => 'cre', 'CsaV3_1G014500' => 'csa', 'CsaV3_1G014510' => 'csa', 'CsaV3_2G034880' => 'csa', 'CsaV3_6G014760' => 'csa', 'CsaV3_6G021500' => 'csa', 'CsaV3_6G048980' => 'csa', 'CSS0002511' => 'camsi', 'CSS0007556' => 'camsi', 'CSS0008532' => 'camsi', 'CSS0009709' => 'camsi', 'CSS0010486' => 'camsi', 'CSS0016768' => 'camsi', 'CSS0023512' => 'camsi', 'CSS0025341' => 'camsi', 'CSS0027999' => 'camsi', 'CSS0028944' => 'camsi', 'CSS0032292' => 'camsi', 'CSS0032464' => 'camsi', 'CSS0037153' => 'camsi', 'CSS0039256' => 'camsi', 'CSS0048392' => 'camsi', 'CSS0050458' => 'camsi', 'DCAR_004224' => 'dca', 'DCAR_006147' => 'dca', 'DCAR_006465' => 'dca', 'DCAR_008159' => 'dca', 'DCAR_012164' => 'dca', 'DCAR_019764' => 'dca', 'Dinv05418' => 'din', 'Dinv10839' => 'din', 'Dinv12521' => 'din', 'Dinv13900' => 'din', 'Dinv29426' => 'din', 'Duzib150G0263' => 'dzi', 'Duzib168G1178' => 'dzi', 'Duzib168G1924' => 'dzi', 'Duzib170G0299' => 'dzi', 'Duzib170G0813' => 'dzi', 'Duzib235G1128' => 'dzi', 'Duzib248G1060' => 'dzi', 'ECA232G1910' => 'eca', 'ECA233G4621' => 'eca', 'ECA238G1216' => 'eca', 'ECA238G1784' => 'eca', 'ECA248G1242' => 'eca', 'EL10Ac8g20071' => 'bvu', 'EL10Ac9g21086' => 'bvu', 'EL10Ac9g22407' => 'bvu', 'EL10Ac9g22412' => 'bvu', 'Eucgr.A01119' => 'egr', 'Eucgr.E04043' => 'egr', 'Eucgr.J00428' => 'egr', 'Eucgr.J00958' => 'egr', 'FAN11G3091' => 'fan', 'FAN11G3651' => 'fan', 'FAN16G2566' => 'fan', 'FAN21G3155' => 'fan', 'FAN21G3400' => 'fan', 'FAN21G3543' => 'fan', 'FAN25G0234' => 'fan', 'FAN25G1422' => 'fan', 'FAN25G3392' => 'fan', 'FvH4_3g01940' => 'fve', 'FvH4_3g29870' => 'fve', 'FvH4_3g33680' => 'fve', 'Glyma.09G004200' => 'gma', 'Glyma.11G151288' => 'gma', 'Glyma.11G189100' => 'gma', 'Glyma.12G072500' => 'gma', 'Glyma.12G085500' => 'gma', 'Glyma.12G181800' => 'gma', 'Glyma.12G193000' => 'gma', 'Glyma.13G309300' => 'gma', 'Glyma.13G319000' => 'gma', 'Glyma.17G012600' => 'gma', 'Gohir.A06G148600' => 'ghi', 'Gohir.A07G115800' => 'ghi', 'Gohir.A08G003600' => 'ghi', 'Gohir.A09G093300' => 'ghi', 'Gohir.A09G105400' => 'ghi', 'Gohir.A09G105500' => 'ghi', 'Gohir.D06G154600' => 'ghi', 'Gohir.D07G120200' => 'ghi', 'Gohir.D08G013900' => 'ghi', 'Gohir.D09G093100' => 'ghi', 'Gohir.D09G102200' => 'ghi', 'Gohir.D09G102300' => 'ghi', 'Gorai.001G129400' => 'gra', 'Gorai.004G008200' => 'gra', 'Gorai.006G109800' => 'gra', 'Gorai.006G119500' => 'gra', 'Gorai.006G121300' => 'gra', 'Gorai.010G180700' => 'gra', 'GSVIVG01012716001' => 'vvi', 'GSVIVG01025118001' => 'vvi', 'GSVIVG01030439001' => 'vvi', 'GSVIVG01031397001' => 'vvi', 'HanXRQChr01g0004201' => 'han', 'HanXRQChr02g0054941' => 'han', 'HanXRQChr05g0141811' => 'han', 'HanXRQChr07g0197751' => 'han', 'HanXRQChr11g0346691' => 'han', 'HanXRQChr13g0396971' => 'han', 'HanXRQChr14g0432951' => 'han', 'HanXRQChr14g0452001' => 'han', 'HanXRQChr15g0496681' => 'han', 'HanXRQChr17g0557491' => 'han', 'HanXRQChr17g0557501' => 'han', 'Haze_06809' => 'cav', 'Haze_12852' => 'cav', 'Haze_15850' => 'cav', 'Haze_23446' => 'cav', 'Haze_23942' => 'cav', 'Haze_23943' => 'cav', 'Hma1.2p1_0091F.1_g046450' => 'hma', 'Hma1.2p1_0128F.1_g059910' => 'hma', 'Hma1.2p1_0249F.1_g102260' => 'hma', 'Hma1.2p1_0453F.1_g156190' => 'hma', 'Hma1.2p1_0695F.1_g204380' => 'hma', 'Hma1.2p1_0749F.1_g212650' => 'hma', 'Hma1.2p1_2156F.1_g315420' => 'hma', 'Hma1.2p1_2686F.1_g326940' => 'hma', 'HPP92_006428' => 'vpl', 'HPP92_012069' => 'vpl', 'HPP92_014129' => 'vpl', 'HPP92_014133' => 'vpl', 'HPP92_017315' => 'vpl', 'HPP92_026445' => 'vpl', 'HPP92_026446' => 'vpl', 'Hund00774' => 'sun', 'Hund07682' => 'sun', 'Hund21413' => 'sun', 'Hund23462' => 'sun', 'Hund23463' => 'sun', 'Lalb_Chr03g0027911' => 'lal', 'Lalb_Chr13g0304271' => 'lal', 'Lalb_Chr19g0137471' => 'lal', 'Lalb_Chr22g0350651' => 'lal', 'Lalb_Chr24g0395151' => 'lal', 'Lj1A1231T40' => 'lonja', 'Lj1A221T48' => 'lonja', 'Lj1C924T12' => 'lonja', 'Lj2C993G6' => 'lonja', 'Lj3g0005790' => 'lja', 'Lj3g0015432' => 'lja', 'Lj3g0017722' => 'lja', 'Lj3g0018497' => 'lja', 'Lj4g0025071' => 'lja', 'Lsat_1_v5_gn_1_129680' => 'lsa', 'Lsat_1_v5_gn_2_25321' => 'lsa', 'Lsat_1_v5_gn_2_95461' => 'lsa', 'Lsat_1_v5_gn_4_159620' => 'lsa', 'Lsat_1_v5_gn_6_41301' => 'lsa', 'Lsat_1_v5_gn_6_74660' => 'lsa', 'Lsat_1_v5_gn_7_11520' => 'lsa', 'Lsat_1_v5_gn_9_67680' => 'lsa', 'Manes.04G008300' => 'mes', 'Manes.04G008400' => 'mes', 'Manes.04G026500' => 'mes', 'Manes.10G135300' => 'mes', 'Manes.11G157300' => 'mes', 'Manes.12G074000' => 'mes', 'Manes.16G006200' => 'mes', 'Manes.17G026400' => 'mes', 'Mapoly0024s0086' => 'mpo', 'Mapoly0024s0087' => 'mpo', 'Mapoly0071s0057' => 'mpo', 'Mapoly0204s0012' => 'mpo', 'MBI04_g37681_MAGBIO' => 'mbi', 'MBI05_g17779_MAGBIO' => 'mbi', 'MBI12_g31184_MAGBIO' => 'mbi', 'MBI17_g11083_MAGBIO' => 'mbi', 'MBI18_g03883_MAGBIO' => 'mbi', 'MBI18_g28940_MAGBIO' => 'mbi', 'MCO01G690' => 'mco', 'MD03G1109900' => 'mdo', 'MD03G1134800' => 'mdo', 'MD05G1348000' => 'mdo', 'MD10G1322400' => 'mdo', 'MD11G1123300' => 'mdo', 'MD11G1157600' => 'mdo', 'Medtr2g084875' => 'mtr', 'Medtr2g088130' => 'mtr', 'Medtr4g055310' => 'mtr', 'Medtr4g061070' => 'mtr', 'Medtr4g132250' => 'mtr', 'MELO3C004795.2' => 'cme', 'MELO3C004797.2' => 'cme', 'MELO3C007396.2' => 'cme', 'MELO3C019277.2' => 'cme', 'MELO3C021449.2' => 'cme', 'MELO3C025736.2' => 'cme', 'Migut.D02175' => 'egut', 'Migut.H01573' => 'egut', 'Migut.M01327' => 'egut', 'Migut.N02513' => 'egut', 'MSTRG.14638' => 'ama', 'MSTRG.18632' => 'ama', 'MSTRG.7203' => 'ama', 'Nitab4.5_0000533g0140' => 'nta', 'Nitab4.5_0000888g0150' => 'nta', 'Nitab4.5_0001453g0040' => 'nta', 'Nitab4.5_0002827g0090' => 'nta', 'Nitab4.5_0003082g0040' => 'nta', 'Nitab4.5_0007799g0040' => 'nta', 'Nitab4.5_0008983g0010' => 'nta', 'Nitab4.5_0009017g0020' => 'nta', 'Nn1g02132' => 'nnu', 'Nn1g03492' => 'nnu', 'Nn1g03493' => 'nnu', 'Nn1g03494' => 'nnu', 'Nn1g07164' => 'nnu', 'Nn1g07291' => 'nnu', 'Nn2g10655' => 'nnu', 'Nn2g11652' => 'nnu', 'Nn2g14008' => 'nnu', 'Nn3g17476' => 'nnu', 'Nn3g17477' => 'nnu', 'Nn4g22370' => 'nnu', 'Nn4g25255' => 'nnu', 'Nn5g27755' => 'nnu', 'Nn6g34260' => 'nnu', 'Nn6g35041' => 'nnu', 'Oeu005924.1' => 'oeu', 'Oeu008383.1' => 'oeu', 'Oeu014928.1' => 'oeu', 'Oeu019889.1' => 'oeu', 'Oeu022271.1' => 'oeu', 'Oeu025271.1' => 'oeu', 'Oeu036302.1' => 'oeu', 'Oeu044100.1' => 'oeu', 'Os01g0528300' => 'osa', 'Os03g0286200' => 'osa', 'Os04g0406600' => 'osa', 'Os07g0512000' => 'osa', 'Os07g0694600' => 'osa', 'Os08g0411000' => 'osa', 'Os09g0565700' => 'osa', 'Os09g0566050' => 'osa', 'Os10g0523700' => 'osa', 'Peaxi162Scf00002g00514' => 'pax', 'Peaxi162Scf00047g01817' => 'pax', 'Peaxi162Scf00114g00001' => 'pax', 'Peaxi162Scf00147g00613' => 'pax', 'Peaxi162Scf00389g00425' => 'pax', 'PGR042G1139' => 'pgr', 'PGR042G3273' => 'pgr', 'PGR102G2180' => 'pgr', 'PGR119G0234' => 'pgr', 'PGR119G0668' => 'pgr', 'PGSC0003DMG400007122' => 'stu', 'PGSC0003DMG400016478' => 'stu', 'PGSC0003DMG400025374' => 'stu', 'PGSC0003DMG400026536' => 'stu', 'Phvul.003G079600' => 'pvu', 'Phvul.005G115600' => 'pvu', 'Phvul.005G127100' => 'pvu', 'Phvul.006G149500' => 'pvu', 'Phvul.006G149600' => 'pvu', 'Phvul.011G071800' => 'pvu', 'Phvul.011G090400' => 'pvu', 'Potri.004G013400' => 'ptr', 'Potri.004G188100' => 'ptr', 'Potri.008G195500' => 'ptr', 'Potri.009G148800' => 'ptr', 'Potri.011G004700' => 'ptr', 'Pp3c17_22810' => 'ppa', 'Pp3c18_4480' => 'ppa', 'Pp3c19_13030' => 'ppa', 'Pp3c1_33620' => 'ppa', 'Pp3c2_9380' => 'ppa', 'PRCOL_00001023' => 'pco', 'Prupe.3G216300' => 'ppe', 'Prupe.4G019500' => 'ppe', 'Prupe.6G092500' => 'ppe', 'Prupe.6G119200' => 'ppe', 'Psat0s1945g0080' => 'psa', 'Psat0s4167g0040' => 'psa', 'Psat1g185800' => 'psa', 'Psat4g006440' => 'psa', 'Psat4g006480' => 'psa', 'Psat4g168120' => 'psa', 'Psat5g255680' => 'psa', 'Psat5g261760' => 'psa', 'Psat7g222120' => 'psa', 'PSO063G7252' => 'pso', 'PSO170G4778' => 'pso', 'PSO210G2249' => 'pso', 'PSO339G2411' => 'pso', 'PSO339G2457' => 'pso', 'PSO339G2854' => 'pso', 'PSO339G4288' => 'pso', 'PSO339G4615' => 'pso', 'PSO384G2796' => 'pso', 'PSO384G2940' => 'pso', 'PSO384G4227' => 'pso', 'PSO478G1425' => 'pso', 'PSO541G3863' => 'pso', 'PSO675G0507' => 'pso', 'PSO782G0338' => 'pso', 'PSO832G0644' => 'pso', 'QL01p013664' => 'qlo', 'QL01p036598' => 'qlo', 'QL05p072984' => 'qlo', 'QL08p005768' => 'qlo', 'QL08p032743' => 'qlo', 'QL93p0073_0439' => 'qlo', 'QL93p0073_0444' => 'qlo', 'RcHm_v2.0_Chr5g0002851' => 'rch', 'RcHm_v2.0_Chr5g0055201' => 'rch', 'RcHm_v2.0_Chr5g0061191' => 'rch', 'RcHm_v2.0_Chr7g0203231' => 'rch', 'Rhsim01G0208100' => 'rsi', 'Rhsim01G0208200' => 'rsi', 'Rhsim02G0106500' => 'rsi', 'Rhsim03G0107900' => 'rsi', 'Rhsim06G0163400' => 'rsi', 'Rhsim13G0105200' => 'rsi', 'Sabra04G0006300' => 'sbr', 'Sabra04G0127000' => 'sbr', 'Sabra08G0148700' => 'sbr', 'Sabra09G0117400' => 'sbr', 'SalBow1G3326' => 'sbo', 'SalBow3G3228' => 'sbo', 'SalBow6G1634' => 'sbo', 'SalBow6G3603' => 'sbo', 'SalBow6G5266' => 'sbo', 'SalBow7G2265' => 'sbo', 'SalBow8G0850' => 'sbo', 'SalBow8G2592' => 'sbo', 'Sc05g0009240' => 'sci', 'Sc12g0002300' => 'sci', 'Sc21g0000100' => 'sci', 'Sc21g0004720' => 'sci', 'Sed0002949' => 'sed', 'Sed0004114' => 'sed', 'Sed0004306' => 'sed', 'Sed0006172' => 'sed', 'Sed0008413' => 'sed', 'Sed0013809' => 'sed', 'Sed0019556' => 'sed', 'SEGI_03570' => 'sgi', 'SEGI_07859' => 'sgi', 'SEGI_15042' => 'sgi', 'SEGI_16263' => 'sgi', 'SEGI_16552' => 'sgi', 'SEGI_24331' => 'sgi', 'SEGI_27316' => 'sgi', 'SEGI_29521' => 'sgi', 'SEGI_41342' => 'sgi', 'SGA_v2.0_scaffold27G11617' => 'sas', 'SGA_v2.0_scaffold316G48428' => 'sas', 'SGA_v2.0_scaffold49G18261' => 'sas', 'SGA_v2.0_scaffold7G03831' => 'sas', 'SGA_v2.0_scaffold93G28359' => 'sas', 'SHI02210' => 'shi', 'SHI06028' => 'shi', 'SHI06321' => 'shi', 'SMO111G0012' => 'smo', 'SMO228G0080' => 'smo', 'SMO356G0756' => 'smo', 'Solyc02g080620.3' => 'sly', 'Solyc06g074530.1' => 'sly', 'Solyc11g066890.1' => 'sly', 'Solyc11g072520.3' => 'sly', 'Sopen02g025330' => 'spe', 'Sopen06g031000' => 'spe', 'Sopen09g008240' => 'spe', 'Sopen09g025210' => 'spe', 'Sopen11g026600' => 'spe', 'Sopen11g030170' => 'spe', 'Sp1g10420' => 'spa', 'Sp3g06570' => 'spa', 'Sp4g10660' => 'spa', 'Sp5g16460' => 'spa', 'Sp6g22710' => 'spa', 'TAR365G0112' => 'tar', 'TAR369G0717' => 'tar', 'TAR374G0976' => 'tar', 'TAR623G1128' => 'tar', 'TAR626G1937' => 'tar', 'TAR627G0123' => 'tar', 'TAR628G0305' => 'tar', 'TAR636G1176' => 'tar', 'TAR636G2442' => 'tar', 'THA.LOC104800556' => 'tha', 'THA.LOC104809501' => 'tha', 'THA.LOC104815126' => 'tha', 'THA.LOC104815732' => 'tha', 'THA.LOC104823528' => 'tha', 'Thecc.02G365600' => 'tca', 'Thecc.06G222300' => 'tca', 'Thecc.09G261800' => 'tca', 'Thecc.09G291400' => 'tca', 'Thhalv10003028m.g' => 'esa', 'Thhalv10007886m.g' => 'esa', 'Thhalv10016085m.g' => 'esa', 'Thhalv10016681m.g' => 'esa', 'Thhalv10020951m.g' => 'esa', 'TPR.G15598' => 'tpr', 'TPR.G29305' => 'tpr', 'TPR.G32395' => 'tpr', 'TPR.G36998' => 'tpr', 'TPR.G4227' => 'tpr', 'TWI18G1433' => 'twi', 'TWI31G0755' => 'twi', 'TWI38G0912' => 'twi', 'TWI75G1097' => 'twi', 'TWI75G1619' => 'twi', 'TWI79G1336' => 'twi', 'unitig_0.g943' => 'ugi', 'unitig_0.g944' => 'ugi', 'unitig_22.g6646' => 'ugi', 'unitig_37.g12681' => 'ugi', 'unitig_8.g3290' => 'ugi', 'vmacro03278' => 'vma', 'vmacro12197' => 'vma', 'vmacro14478' => 'vma', 'vmacro15787' => 'vma', 'vmacro15789' => 'vma', 'vmacro15790' => 'vma', 'vmacro15806' => 'vma', 'vmacro22907' => 'vma', 'vmacro22908' => 'vma', 'vmacro22909' => 'vma', 'vmacro23108' => 'vma', 'VMungo0540G0540' => 'vmu', 'VMungo0540G2468' => 'vmu', 'VMungo1080G0390' => 'vmu', 'VMungo1080G1165' => 'vmu', 'VMungo1127G0170' => 'vmu', 'VMungo1127G2099' => 'vmu', 'VMungo1215G3013' => 'vmu', 'Zm00001eb013110' => 'zma', 'Zm00001eb084260' => 'zma', 'Zm00001eb096110' => 'zma', 'Zm00001eb217510' => 'zma', 'Zm00001eb322550' => 'zma', 'Zm00001eb390770' => 'zma', 'Zm00001eb397170' => 'zma', 'Zm00001eb404610' => 'zma', 'Zm00001eb421790' => 'zma' ) $gf_id = 'HOM05D000911' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000911' ) $data_identifier = 'HOM05D000911' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 16, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 5, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 6, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 8, 'nnu' => (int) 16, 'oeu' => (int) 8, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 5, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 16, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421790' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000911', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27780' => 'bna', 'A03p35380' => 'bna', 'A04p21160' => 'bna', 'A05p40570' => 'bna', 'A06p26900' => 'bna', 'A08p33230' => 'bna', 'A09p65960' => 'bna', 'A10p18290' => 'bna', 'Aa31LG1G12990' => 'aar', 'Aa31LG1G2980' => 'aar', 'Aa31LG4G14320' => 'aar', 'Aa31LG7G11800' => 'aar', 'Aa31sc36G50' => 'aar', 'Aa31sc36G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3721' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5459' => 'aag', 'Actinidia03028' => 'ach', 'Actinidia03753' => 'ach', 'Actinidia04187' => 'ach', 'Actinidia05509' => 'ach', 'Actinidia24180' => 'ach', 'Actinidia26906' => 'ach', 'Actinidia37097' => 'ach', 'Actinidia38249' => 'ach', 'Ah.01g003470' => 'amhyb', 'Ah.01g004580' => 'amhyb', 'Ah.01g014850' => 'amhyb', 'Ah.01g016830' => 'amhyb', 'Ah.14g088000' => 'amhyb', 'AL1G22980' => 'aly', 'AL3G18990' => 'aly', 'AL4G22440' => 'aly', 'AL4G33180' => 'aly', 'AL5G22920' => 'aly', 'AL6G33660' => 'aly', 'AL8G20720' => 'aly', 'Aqoxy1G00935' => 'aox', 'Aqoxy1G02094' => 'aox', 'Aqoxy2G01239' => 'aox', 'Aqoxy4G01870' => 'aox', 'Aqoxy7G00450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.36ZVTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71EM27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5D6C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH3WRE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3NCM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RIM768' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YB5YRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z36GDV' => 'arhy', 'AT1G08250' => 'ath', 'AT1G11790' => 'ath', 'AT2G27820' => 'ath', 'AT3G07630' => 'ath', 'AT3G44720' => 'ath', 'AT5G22630' => 'ath', 'ATR0693G304' => 'atr', 'ATR0794G109' => 'atr', 'ATR0820G120' => 'atr', 'ATR1159G064' => 'atr', 'Atru.chr10.2239' => 'acertr', 'Atru.chr3.3371' => 'acertr', 'Atru.chr6.3202' => 'acertr', 'AUR62006499' => 'cqu', 'AUR62012718' => 'cqu', 'AUR62021938' => 'cqu', 'AUR62023932' => 'cqu', 'AUR62025034' => 'cqu', 'AUR62025035' => 'cqu', 'AUR62038307' => 'cqu', 'AUR62043466' => 'cqu', 'BcaB02g10748' => 'bca', 'BcaB03g13231' => 'bca', 'BcaB03g14689' => 'bca', 'BcaB05g22716' => 'bca', 'BcaB06g28172' => 'bca', 'BcaB08g36413' => 'bca', 'BcaC01g02186' => 'bca', 'BcaC01g04272' => 'bca', 'BcaC02g08080' => 'bca', 'BcaC02g08227' => 'bca', 'BcaC03g13901' => 'bca', 'BcaC04g19593' => 'bca', 'BcaC04g20874' => 'bca', 'BcaC05g29557' => 'bca', 'BcaC06g35505' => 'bca', 'BcaC07g41954' => 'bca', 'BcaC07g41955' => 'bca', 'BcaC07g41956' => 'bca', 'BcaC07g42519' => 'bca', 'BcaC07g42520' => 'bca', 'BcaC07g42523' => 'bca', 'BcaC07g42524' => 'bca', 'BcaC07g42525' => 'bca', 'BcaC08g47480' => 'bca', 'BcaC08g47481' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00530' => 'bna', 'BolC2t07178H' => 'bol', 'BolC3t16567H' => 'bol', 'BolC4t27234H' => 'bol', 'BolC5t29728H' => 'bol', 'BolC5t34622H' => 'bol', 'BolC6t40321H' => 'bol', 'BolC7t42028H' => 'bol', 'BolC8t49125H' => 'bol', 'BolC8t52538H' => 'bol', 'BolC8t52539H' => 'bol', 'BolC9t56681H' => 'bol', 'BolC9t58266H' => 'bol', 'BolSC21t60294H' => 'bol', 'BraA02t05670Z' => 'bra', 'BraA03t12716Z' => 'bra', 'BraA04t17685Z' => 'bra', 'BraA05t22788Z' => 'bra', 'BraA06t24032Z' => 'bra', 'BraA06t25625Z' => 'bra', 'BraA07t27930Z' => 'bra', 'BraA08t35242Z' => 'bra', 'BraA09t38609Z' => 'bra', 'BraA10t43905Z' => 'bra', 'C02p11060' => 'bna', 'C03p42990' => 'bna', 'C03p67310' => 'bna', 'C04p56990' => 'bna', 'C04p58660' => 'bna', 'C05p09890' => 'bna', 'C05p59680' => 'bna', 'C06p19830' => 'bna', 'C06p53040' => 'bna', 'C07p15230' => 'bna', 'C08p50070' => 'bna', 'C08p50090' => 'bna', 'C09p38330' => 'bna', 'C09p53940' => 'bna', 'CAN.G1014.1' => 'can', 'CAN.G644.30' => 'can', 'CAN.G84.47' => 'can', 'CAN.G919.8' => 'can', 'CANSAT54G0113' => 'cansat', 'CANSAT54G1286' => 'cansat', 'CANSAT64G1020' => 'cansat', 'CARHR008080' => 'chi', 'CARHR008090' => 'chi', 'CARHR012130' => 'chi', 'CARHR038390' => 'chi', 'CARHR082330' => 'chi', 'CARHR120520' => 'chi', 'CARHR151470' => 'chi', 'CARHR190950' => 'chi', 'Carub.0001s0760' => 'cru', 'Carub.0001s1146' => 'cru', 'Carub.0003s0721' => 'cru', 'Carub.0004s0858' => 'cru', 'Carub.0005s1040' => 'cru', 'Carub.0006s2035' => 'cru', 'Carub.0015s0005' => 'cru', 'Ca_01607_v3' => 'car', 'Ca_01677_v3' => 'car', 'Ca_06087_v3' => 'car', 'Ca_19238_v3' => 'car', 'Ca_19373_v3' => 'car', 'Ca_21079_v3' => 'car', 'CBR_g54016' => 'cbr', 'CBR_g54018' => 'cbr', 'CBR_g54020' => 'cbr', 'Cc01_g09780' => 'ccan', 'Cc01_g11680' => 'ccan', 'Cc02_g15610' => 'ccan', 'Cc05_g04350' => 'ccan', 'Cc09_g01580' => 'ccan', 'CDE01G0795' => 'cde', 'CDE02G2024' => 'cde', 'CDE02G2260' => 'cde', 'CDE02G4561' => 'cde', 'CDE05G2733' => 'cde', 'CDE05G3422' => 'cde', 'CDE06G2003' => 'cde', 'CDE08G0576' => 'cde', 'CDE09G0048' => 'cde', 'CDE11G0805' => 'cde', 'Cfa003644' => 'cfa', 'Cfa006290' => 'cfa', 'Cfa010080' => 'cfa', 'Cfa011376' => 'cfa', 'Cfa011576' => 'cfa', 'Cfa011577' => 'cfa', 'Cfa014389' => 'cfa', 'Ciclev10006044m.g' => 'ccl', 'Ciclev10006954m.g' => 'ccl', 'Ciclev10015131m.g' => 'ccl', 'Ciclev10015580m.g' => 'ccl', 'Ciclev10028359m.g' => 'ccl', 'Ciclev10028573m.g' => 'ccl', 'CiPaw.03G159300' => 'cil', 'CiPaw.04G115100' => 'cil', 'CiPaw.09G092800' => 'cil', 'CiPaw.10G071800' => 'cil', 'CiPaw.13G105800' => 'cil', 'CiPaw.13G141000' => 'cil', 'CiPaw.14G103400' => 'cil', 'ClCG01G012700' => 'cla', 'ClCG01G012720' => 'cla', 'ClCG01G021920' => 'cla', 'ClCG02G008870' => 'cla', 'ClCG02G020840' => 'cla', 'ClCG02G021930' => 'cla', 'COL.COLO4_19302' => 'col', 'COL.COLO4_25262' => 'col', 'COL.COLO4_31788' => 'col', 'Cpa.g.c34684' => 'cpa', 'Cpa.g.c36520.1' => 'cpa', 'Cpa.g.c45626' => 'cpa', 'Cpa.g.sc121.17' => 'cpa', 'Cpa.g.sc13.22' => 'cpa', 'Cpa.g.sc87.88' => 'cpa', 'Cre06.g261800' => 'cre', 'CsaV3_1G014500' => 'csa', 'CsaV3_1G014510' => 'csa', 'CsaV3_2G034880' => 'csa', 'CsaV3_6G014760' => 'csa', 'CsaV3_6G021500' => 'csa', 'CsaV3_6G048980' => 'csa', 'CSS0002511' => 'camsi', 'CSS0007556' => 'camsi', 'CSS0008532' => 'camsi', 'CSS0009709' => 'camsi', 'CSS0010486' => 'camsi', 'CSS0016768' => 'camsi', 'CSS0023512' => 'camsi', 'CSS0025341' => 'camsi', 'CSS0027999' => 'camsi', 'CSS0028944' => 'camsi', 'CSS0032292' => 'camsi', 'CSS0032464' => 'camsi', 'CSS0037153' => 'camsi', 'CSS0039256' => 'camsi', 'CSS0048392' => 'camsi', 'CSS0050458' => 'camsi', 'DCAR_004224' => 'dca', 'DCAR_006147' => 'dca', 'DCAR_006465' => 'dca', 'DCAR_008159' => 'dca', 'DCAR_012164' => 'dca', 'DCAR_019764' => 'dca', 'Dinv05418' => 'din', 'Dinv10839' => 'din', 'Dinv12521' => 'din', 'Dinv13900' => 'din', 'Dinv29426' => 'din', 'Duzib150G0263' => 'dzi', 'Duzib168G1178' => 'dzi', 'Duzib168G1924' => 'dzi', 'Duzib170G0299' => 'dzi', 'Duzib170G0813' => 'dzi', 'Duzib235G1128' => 'dzi', 'Duzib248G1060' => 'dzi', 'ECA232G1910' => 'eca', 'ECA233G4621' => 'eca', 'ECA238G1216' => 'eca', 'ECA238G1784' => 'eca', 'ECA248G1242' => 'eca', 'EL10Ac8g20071' => 'bvu', 'EL10Ac9g21086' => 'bvu', 'EL10Ac9g22407' => 'bvu', 'EL10Ac9g22412' => 'bvu', 'Eucgr.A01119' => 'egr', 'Eucgr.E04043' => 'egr', 'Eucgr.J00428' => 'egr', 'Eucgr.J00958' => 'egr', 'FAN11G3091' => 'fan', 'FAN11G3651' => 'fan', 'FAN16G2566' => 'fan', 'FAN21G3155' => 'fan', 'FAN21G3400' => 'fan', 'FAN21G3543' => 'fan', 'FAN25G0234' => 'fan', 'FAN25G1422' => 'fan', 'FAN25G3392' => 'fan', 'FvH4_3g01940' => 'fve', 'FvH4_3g29870' => 'fve', 'FvH4_3g33680' => 'fve', 'Glyma.09G004200' => 'gma', 'Glyma.11G151288' => 'gma', 'Glyma.11G189100' => 'gma', 'Glyma.12G072500' => 'gma', 'Glyma.12G085500' => 'gma', 'Glyma.12G181800' => 'gma', 'Glyma.12G193000' => 'gma', 'Glyma.13G309300' => 'gma', 'Glyma.13G319000' => 'gma', 'Glyma.17G012600' => 'gma', 'Gohir.A06G148600' => 'ghi', 'Gohir.A07G115800' => 'ghi', 'Gohir.A08G003600' => 'ghi', 'Gohir.A09G093300' => 'ghi', 'Gohir.A09G105400' => 'ghi', 'Gohir.A09G105500' => 'ghi', 'Gohir.D06G154600' => 'ghi', 'Gohir.D07G120200' => 'ghi', 'Gohir.D08G013900' => 'ghi', 'Gohir.D09G093100' => 'ghi', 'Gohir.D09G102200' => 'ghi', 'Gohir.D09G102300' => 'ghi', 'Gorai.001G129400' => 'gra', 'Gorai.004G008200' => 'gra', 'Gorai.006G109800' => 'gra', 'Gorai.006G119500' => 'gra', 'Gorai.006G121300' => 'gra', 'Gorai.010G180700' => 'gra', 'GSVIVG01012716001' => 'vvi', 'GSVIVG01025118001' => 'vvi', 'GSVIVG01030439001' => 'vvi', 'GSVIVG01031397001' => 'vvi', 'HanXRQChr01g0004201' => 'han', 'HanXRQChr02g0054941' => 'han', 'HanXRQChr05g0141811' => 'han', 'HanXRQChr07g0197751' => 'han', 'HanXRQChr11g0346691' => 'han', 'HanXRQChr13g0396971' => 'han', 'HanXRQChr14g0432951' => 'han', 'HanXRQChr14g0452001' => 'han', 'HanXRQChr15g0496681' => 'han', 'HanXRQChr17g0557491' => 'han', 'HanXRQChr17g0557501' => 'han', 'Haze_06809' => 'cav', 'Haze_12852' => 'cav', 'Haze_15850' => 'cav', 'Haze_23446' => 'cav', 'Haze_23942' => 'cav', 'Haze_23943' => 'cav', 'Hma1.2p1_0091F.1_g046450' => 'hma', 'Hma1.2p1_0128F.1_g059910' => 'hma', 'Hma1.2p1_0249F.1_g102260' => 'hma', 'Hma1.2p1_0453F.1_g156190' => 'hma', 'Hma1.2p1_0695F.1_g204380' => 'hma', 'Hma1.2p1_0749F.1_g212650' => 'hma', 'Hma1.2p1_2156F.1_g315420' => 'hma', 'Hma1.2p1_2686F.1_g326940' => 'hma', 'HPP92_006428' => 'vpl', 'HPP92_012069' => 'vpl', 'HPP92_014129' => 'vpl', 'HPP92_014133' => 'vpl', 'HPP92_017315' => 'vpl', 'HPP92_026445' => 'vpl', 'HPP92_026446' => 'vpl', 'Hund00774' => 'sun', 'Hund07682' => 'sun', 'Hund21413' => 'sun', 'Hund23462' => 'sun', 'Hund23463' => 'sun', 'Lalb_Chr03g0027911' => 'lal', 'Lalb_Chr13g0304271' => 'lal', 'Lalb_Chr19g0137471' => 'lal', 'Lalb_Chr22g0350651' => 'lal', 'Lalb_Chr24g0395151' => 'lal', 'Lj1A1231T40' => 'lonja', 'Lj1A221T48' => 'lonja', 'Lj1C924T12' => 'lonja', 'Lj2C993G6' => 'lonja', 'Lj3g0005790' => 'lja', 'Lj3g0015432' => 'lja', 'Lj3g0017722' => 'lja', 'Lj3g0018497' => 'lja', 'Lj4g0025071' => 'lja', 'Lsat_1_v5_gn_1_129680' => 'lsa', 'Lsat_1_v5_gn_2_25321' => 'lsa', 'Lsat_1_v5_gn_2_95461' => 'lsa', 'Lsat_1_v5_gn_4_159620' => 'lsa', 'Lsat_1_v5_gn_6_41301' => 'lsa', 'Lsat_1_v5_gn_6_74660' => 'lsa', 'Lsat_1_v5_gn_7_11520' => 'lsa', 'Lsat_1_v5_gn_9_67680' => 'lsa', 'Manes.04G008300' => 'mes', 'Manes.04G008400' => 'mes', 'Manes.04G026500' => 'mes', 'Manes.10G135300' => 'mes', 'Manes.11G157300' => 'mes', 'Manes.12G074000' => 'mes', 'Manes.16G006200' => 'mes', 'Manes.17G026400' => 'mes', 'Mapoly0024s0086' => 'mpo', 'Mapoly0024s0087' => 'mpo', 'Mapoly0071s0057' => 'mpo', 'Mapoly0204s0012' => 'mpo', 'MBI04_g37681_MAGBIO' => 'mbi', 'MBI05_g17779_MAGBIO' => 'mbi', 'MBI12_g31184_MAGBIO' => 'mbi', 'MBI17_g11083_MAGBIO' => 'mbi', 'MBI18_g03883_MAGBIO' => 'mbi', 'MBI18_g28940_MAGBIO' => 'mbi', 'MCO01G690' => 'mco', 'MD03G1109900' => 'mdo', 'MD03G1134800' => 'mdo', 'MD05G1348000' => 'mdo', 'MD10G1322400' => 'mdo', 'MD11G1123300' => 'mdo', 'MD11G1157600' => 'mdo', 'Medtr2g084875' => 'mtr', 'Medtr2g088130' => 'mtr', 'Medtr4g055310' => 'mtr', 'Medtr4g061070' => 'mtr', 'Medtr4g132250' => 'mtr', 'MELO3C004795.2' => 'cme', 'MELO3C004797.2' => 'cme', 'MELO3C007396.2' => 'cme', 'MELO3C019277.2' => 'cme', 'MELO3C021449.2' => 'cme', 'MELO3C025736.2' => 'cme', 'Migut.D02175' => 'egut', 'Migut.H01573' => 'egut', 'Migut.M01327' => 'egut', 'Migut.N02513' => 'egut', 'MSTRG.14638' => 'ama', 'MSTRG.18632' => 'ama', 'MSTRG.7203' => 'ama', 'Nitab4.5_0000533g0140' => 'nta', 'Nitab4.5_0000888g0150' => 'nta', 'Nitab4.5_0001453g0040' => 'nta', 'Nitab4.5_0002827g0090' => 'nta', 'Nitab4.5_0003082g0040' => 'nta', 'Nitab4.5_0007799g0040' => 'nta', 'Nitab4.5_0008983g0010' => 'nta', 'Nitab4.5_0009017g0020' => 'nta', 'Nn1g02132' => 'nnu', 'Nn1g03492' => 'nnu', 'Nn1g03493' => 'nnu', 'Nn1g03494' => 'nnu', 'Nn1g07164' => 'nnu', 'Nn1g07291' => 'nnu', 'Nn2g10655' => 'nnu', 'Nn2g11652' => 'nnu', 'Nn2g14008' => 'nnu', 'Nn3g17476' => 'nnu', 'Nn3g17477' => 'nnu', 'Nn4g22370' => 'nnu', 'Nn4g25255' => 'nnu', 'Nn5g27755' => 'nnu', 'Nn6g34260' => 'nnu', 'Nn6g35041' => 'nnu', 'Oeu005924.1' => 'oeu', 'Oeu008383.1' => 'oeu', 'Oeu014928.1' => 'oeu', 'Oeu019889.1' => 'oeu', 'Oeu022271.1' => 'oeu', 'Oeu025271.1' => 'oeu', 'Oeu036302.1' => 'oeu', 'Oeu044100.1' => 'oeu', 'Os01g0528300' => 'osa', 'Os03g0286200' => 'osa', 'Os04g0406600' => 'osa', 'Os07g0512000' => 'osa', 'Os07g0694600' => 'osa', 'Os08g0411000' => 'osa', 'Os09g0565700' => 'osa', 'Os09g0566050' => 'osa', 'Os10g0523700' => 'osa', 'Peaxi162Scf00002g00514' => 'pax', 'Peaxi162Scf00047g01817' => 'pax', 'Peaxi162Scf00114g00001' => 'pax', 'Peaxi162Scf00147g00613' => 'pax', 'Peaxi162Scf00389g00425' => 'pax', 'PGR042G1139' => 'pgr', 'PGR042G3273' => 'pgr', 'PGR102G2180' => 'pgr', 'PGR119G0234' => 'pgr', 'PGR119G0668' => 'pgr', 'PGSC0003DMG400007122' => 'stu', 'PGSC0003DMG400016478' => 'stu', 'PGSC0003DMG400025374' => 'stu', 'PGSC0003DMG400026536' => 'stu', 'Phvul.003G079600' => 'pvu', 'Phvul.005G115600' => 'pvu', 'Phvul.005G127100' => 'pvu', 'Phvul.006G149500' => 'pvu', 'Phvul.006G149600' => 'pvu', 'Phvul.011G071800' => 'pvu', 'Phvul.011G090400' => 'pvu', 'Potri.004G013400' => 'ptr', 'Potri.004G188100' => 'ptr', 'Potri.008G195500' => 'ptr', 'Potri.009G148800' => 'ptr', 'Potri.011G004700' => 'ptr', 'Pp3c17_22810' => 'ppa', 'Pp3c18_4480' => 'ppa', 'Pp3c19_13030' => 'ppa', 'Pp3c1_33620' => 'ppa', 'Pp3c2_9380' => 'ppa', 'PRCOL_00001023' => 'pco', 'Prupe.3G216300' => 'ppe', 'Prupe.4G019500' => 'ppe', 'Prupe.6G092500' => 'ppe', 'Prupe.6G119200' => 'ppe', 'Psat0s1945g0080' => 'psa', 'Psat0s4167g0040' => 'psa', 'Psat1g185800' => 'psa', 'Psat4g006440' => 'psa', 'Psat4g006480' => 'psa', 'Psat4g168120' => 'psa', 'Psat5g255680' => 'psa', 'Psat5g261760' => 'psa', 'Psat7g222120' => 'psa', 'PSO063G7252' => 'pso', 'PSO170G4778' => 'pso', 'PSO210G2249' => 'pso', 'PSO339G2411' => 'pso', 'PSO339G2457' => 'pso', 'PSO339G2854' => 'pso', 'PSO339G4288' => 'pso', 'PSO339G4615' => 'pso', 'PSO384G2796' => 'pso', 'PSO384G2940' => 'pso', 'PSO384G4227' => 'pso', 'PSO478G1425' => 'pso', 'PSO541G3863' => 'pso', 'PSO675G0507' => 'pso', 'PSO782G0338' => 'pso', 'PSO832G0644' => 'pso', 'QL01p013664' => 'qlo', 'QL01p036598' => 'qlo', 'QL05p072984' => 'qlo', 'QL08p005768' => 'qlo', 'QL08p032743' => 'qlo', 'QL93p0073_0439' => 'qlo', 'QL93p0073_0444' => 'qlo', 'RcHm_v2.0_Chr5g0002851' => 'rch', 'RcHm_v2.0_Chr5g0055201' => 'rch', 'RcHm_v2.0_Chr5g0061191' => 'rch', 'RcHm_v2.0_Chr7g0203231' => 'rch', 'Rhsim01G0208100' => 'rsi', 'Rhsim01G0208200' => 'rsi', 'Rhsim02G0106500' => 'rsi', 'Rhsim03G0107900' => 'rsi', 'Rhsim06G0163400' => 'rsi', 'Rhsim13G0105200' => 'rsi', 'Sabra04G0006300' => 'sbr', 'Sabra04G0127000' => 'sbr', 'Sabra08G0148700' => 'sbr', 'Sabra09G0117400' => 'sbr', 'SalBow1G3326' => 'sbo', 'SalBow3G3228' => 'sbo', 'SalBow6G1634' => 'sbo', 'SalBow6G3603' => 'sbo', 'SalBow6G5266' => 'sbo', 'SalBow7G2265' => 'sbo', 'SalBow8G0850' => 'sbo', 'SalBow8G2592' => 'sbo', 'Sc05g0009240' => 'sci', 'Sc12g0002300' => 'sci', 'Sc21g0000100' => 'sci', 'Sc21g0004720' => 'sci', 'Sed0002949' => 'sed', 'Sed0004114' => 'sed', 'Sed0004306' => 'sed', 'Sed0006172' => 'sed', 'Sed0008413' => 'sed', 'Sed0013809' => 'sed', 'Sed0019556' => 'sed', 'SEGI_03570' => 'sgi', 'SEGI_07859' => 'sgi', 'SEGI_15042' => 'sgi', 'SEGI_16263' => 'sgi', 'SEGI_16552' => 'sgi', 'SEGI_24331' => 'sgi', 'SEGI_27316' => 'sgi', 'SEGI_29521' => 'sgi', 'SEGI_41342' => 'sgi', 'SGA_v2.0_scaffold27G11617' => 'sas', 'SGA_v2.0_scaffold316G48428' => 'sas', 'SGA_v2.0_scaffold49G18261' => 'sas', 'SGA_v2.0_scaffold7G03831' => 'sas', 'SGA_v2.0_scaffold93G28359' => 'sas', 'SHI02210' => 'shi', 'SHI06028' => 'shi', 'SHI06321' => 'shi', 'SMO111G0012' => 'smo', 'SMO228G0080' => 'smo', 'SMO356G0756' => 'smo', 'Solyc02g080620.3' => 'sly', 'Solyc06g074530.1' => 'sly', 'Solyc11g066890.1' => 'sly', 'Solyc11g072520.3' => 'sly', 'Sopen02g025330' => 'spe', 'Sopen06g031000' => 'spe', 'Sopen09g008240' => 'spe', 'Sopen09g025210' => 'spe', 'Sopen11g026600' => 'spe', 'Sopen11g030170' => 'spe', 'Sp1g10420' => 'spa', 'Sp3g06570' => 'spa', 'Sp4g10660' => 'spa', 'Sp5g16460' => 'spa', 'Sp6g22710' => 'spa', 'TAR365G0112' => 'tar', 'TAR369G0717' => 'tar', 'TAR374G0976' => 'tar', 'TAR623G1128' => 'tar', 'TAR626G1937' => 'tar', 'TAR627G0123' => 'tar', 'TAR628G0305' => 'tar', 'TAR636G1176' => 'tar', 'TAR636G2442' => 'tar', 'THA.LOC104800556' => 'tha', 'THA.LOC104809501' => 'tha', 'THA.LOC104815126' => 'tha', 'THA.LOC104815732' => 'tha', 'THA.LOC104823528' => 'tha', 'Thecc.02G365600' => 'tca', 'Thecc.06G222300' => 'tca', 'Thecc.09G261800' => 'tca', 'Thecc.09G291400' => 'tca', 'Thhalv10003028m.g' => 'esa', 'Thhalv10007886m.g' => 'esa', 'Thhalv10016085m.g' => 'esa', 'Thhalv10016681m.g' => 'esa', 'Thhalv10020951m.g' => 'esa', 'TPR.G15598' => 'tpr', 'TPR.G29305' => 'tpr', 'TPR.G32395' => 'tpr', 'TPR.G36998' => 'tpr', 'TPR.G4227' => 'tpr', 'TWI18G1433' => 'twi', 'TWI31G0755' => 'twi', 'TWI38G0912' => 'twi', 'TWI75G1097' => 'twi', 'TWI75G1619' => 'twi', 'TWI79G1336' => 'twi', 'unitig_0.g943' => 'ugi', 'unitig_0.g944' => 'ugi', 'unitig_22.g6646' => 'ugi', 'unitig_37.g12681' => 'ugi', 'unitig_8.g3290' => 'ugi', 'vmacro03278' => 'vma', 'vmacro12197' => 'vma', 'vmacro14478' => 'vma', 'vmacro15787' => 'vma', 'vmacro15789' => 'vma', 'vmacro15790' => 'vma', 'vmacro15806' => 'vma', 'vmacro22907' => 'vma', 'vmacro22908' => 'vma', 'vmacro22909' => 'vma', 'vmacro23108' => 'vma', 'VMungo0540G0540' => 'vmu', 'VMungo0540G2468' => 'vmu', 'VMungo1080G0390' => 'vmu', 'VMungo1080G1165' => 'vmu', 'VMungo1127G0170' => 'vmu', 'VMungo1127G2099' => 'vmu', 'VMungo1215G3013' => 'vmu', 'Zm00001eb013110' => 'zma', 'Zm00001eb084260' => 'zma', 'Zm00001eb096110' => 'zma', 'Zm00001eb217510' => 'zma', 'Zm00001eb322550' => 'zma', 'Zm00001eb390770' => 'zma', 'Zm00001eb397170' => 'zma', 'Zm00001eb404610' => 'zma', 'Zm00001eb421790' => 'zma' ), 'gf_id' => 'HOM05D000911', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000911' ), 'data_identifier' => 'HOM05D000911', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000911', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27780' => 'bna', 'A03p35380' => 'bna', 'A04p21160' => 'bna', 'A05p40570' => 'bna', 'A06p26900' => 'bna', 'A08p33230' => 'bna', 'A09p65960' => 'bna', 'A10p18290' => 'bna', 'Aa31LG1G12990' => 'aar', 'Aa31LG1G2980' => 'aar', 'Aa31LG4G14320' => 'aar', 'Aa31LG7G11800' => 'aar', 'Aa31sc36G50' => 'aar', 'Aa31sc36G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3721' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5459' => 'aag', 'Actinidia03028' => 'ach', 'Actinidia03753' => 'ach', 'Actinidia04187' => 'ach', 'Actinidia05509' => 'ach', 'Actinidia24180' => 'ach', 'Actinidia26906' => 'ach', 'Actinidia37097' => 'ach', 'Actinidia38249' => 'ach', 'Ah.01g003470' => 'amhyb', 'Ah.01g004580' => 'amhyb', 'Ah.01g014850' => 'amhyb', 'Ah.01g016830' => 'amhyb', 'Ah.14g088000' => 'amhyb', 'AL1G22980' => 'aly', 'AL3G18990' => 'aly', 'AL4G22440' => 'aly', 'AL4G33180' => 'aly', 'AL5G22920' => 'aly', 'AL6G33660' => 'aly', 'AL8G20720' => 'aly', 'Aqoxy1G00935' => 'aox', 'Aqoxy1G02094' => 'aox', 'Aqoxy2G01239' => 'aox', 'Aqoxy4G01870' => 'aox', 'Aqoxy7G00450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.36ZVTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71EM27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5D6C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH3WRE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3NCM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RIM768' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YB5YRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z36GDV' => 'arhy', 'AT1G08250' => 'ath', 'AT1G11790' => 'ath', 'AT2G27820' => 'ath', 'AT3G07630' => 'ath', 'AT3G44720' => 'ath', 'AT5G22630' => 'ath', 'ATR0693G304' => 'atr', 'ATR0794G109' => 'atr', 'ATR0820G120' => 'atr', 'ATR1159G064' => 'atr', 'Atru.chr10.2239' => 'acertr', 'Atru.chr3.3371' => 'acertr', 'Atru.chr6.3202' => 'acertr', 'AUR62006499' => 'cqu', 'AUR62012718' => 'cqu', 'AUR62021938' => 'cqu', 'AUR62023932' => 'cqu', 'AUR62025034' => 'cqu', 'AUR62025035' => 'cqu', 'AUR62038307' => 'cqu', 'AUR62043466' => 'cqu', 'BcaB02g10748' => 'bca', 'BcaB03g13231' => 'bca', 'BcaB03g14689' => 'bca', 'BcaB05g22716' => 'bca', 'BcaB06g28172' => 'bca', 'BcaB08g36413' => 'bca', 'BcaC01g02186' => 'bca', 'BcaC01g04272' => 'bca', 'BcaC02g08080' => 'bca', 'BcaC02g08227' => 'bca', 'BcaC03g13901' => 'bca', 'BcaC04g19593' => 'bca', 'BcaC04g20874' => 'bca', 'BcaC05g29557' => 'bca', 'BcaC06g35505' => 'bca', 'BcaC07g41954' => 'bca', 'BcaC07g41955' => 'bca', 'BcaC07g41956' => 'bca', 'BcaC07g42519' => 'bca', 'BcaC07g42520' => 'bca', 'BcaC07g42523' => 'bca', 'BcaC07g42524' => 'bca', 'BcaC07g42525' => 'bca', 'BcaC08g47480' => 'bca', 'BcaC08g47481' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00530' => 'bna', 'BolC2t07178H' => 'bol', 'BolC3t16567H' => 'bol', 'BolC4t27234H' => 'bol', 'BolC5t29728H' => 'bol', 'BolC5t34622H' => 'bol', 'BolC6t40321H' => 'bol', 'BolC7t42028H' => 'bol', 'BolC8t49125H' => 'bol', 'BolC8t52538H' => 'bol', 'BolC8t52539H' => 'bol', 'BolC9t56681H' => 'bol', 'BolC9t58266H' => 'bol', 'BolSC21t60294H' => 'bol', 'BraA02t05670Z' => 'bra', 'BraA03t12716Z' => 'bra', 'BraA04t17685Z' => 'bra', 'BraA05t22788Z' => 'bra', 'BraA06t24032Z' => 'bra', 'BraA06t25625Z' => 'bra', 'BraA07t27930Z' => 'bra', 'BraA08t35242Z' => 'bra', 'BraA09t38609Z' => 'bra', 'BraA10t43905Z' => 'bra', 'C02p11060' => 'bna', 'C03p42990' => 'bna', 'C03p67310' => 'bna', 'C04p56990' => 'bna', 'C04p58660' => 'bna', 'C05p09890' => 'bna', 'C05p59680' => 'bna', 'C06p19830' => 'bna', 'C06p53040' => 'bna', 'C07p15230' => 'bna', 'C08p50070' => 'bna', 'C08p50090' => 'bna', 'C09p38330' => 'bna', 'C09p53940' => 'bna', 'CAN.G1014.1' => 'can', 'CAN.G644.30' => 'can', 'CAN.G84.47' => 'can', 'CAN.G919.8' => 'can', 'CANSAT54G0113' => 'cansat', 'CANSAT54G1286' => 'cansat', 'CANSAT64G1020' => 'cansat', 'CARHR008080' => 'chi', 'CARHR008090' => 'chi', 'CARHR012130' => 'chi', 'CARHR038390' => 'chi', 'CARHR082330' => 'chi', 'CARHR120520' => 'chi', 'CARHR151470' => 'chi', 'CARHR190950' => 'chi', 'Carub.0001s0760' => 'cru', 'Carub.0001s1146' => 'cru', 'Carub.0003s0721' => 'cru', 'Carub.0004s0858' => 'cru', 'Carub.0005s1040' => 'cru', 'Carub.0006s2035' => 'cru', 'Carub.0015s0005' => 'cru', 'Ca_01607_v3' => 'car', 'Ca_01677_v3' => 'car', 'Ca_06087_v3' => 'car', 'Ca_19238_v3' => 'car', 'Ca_19373_v3' => 'car', 'Ca_21079_v3' => 'car', 'CBR_g54016' => 'cbr', 'CBR_g54018' => 'cbr', 'CBR_g54020' => 'cbr', 'Cc01_g09780' => 'ccan', 'Cc01_g11680' => 'ccan', 'Cc02_g15610' => 'ccan', 'Cc05_g04350' => 'ccan', 'Cc09_g01580' => 'ccan', 'CDE01G0795' => 'cde', 'CDE02G2024' => 'cde', 'CDE02G2260' => 'cde', 'CDE02G4561' => 'cde', 'CDE05G2733' => 'cde', 'CDE05G3422' => 'cde', 'CDE06G2003' => 'cde', 'CDE08G0576' => 'cde', 'CDE09G0048' => 'cde', 'CDE11G0805' => 'cde', 'Cfa003644' => 'cfa', 'Cfa006290' => 'cfa', 'Cfa010080' => 'cfa', 'Cfa011376' => 'cfa', 'Cfa011576' => 'cfa', 'Cfa011577' => 'cfa', 'Cfa014389' => 'cfa', 'Ciclev10006044m.g' => 'ccl', 'Ciclev10006954m.g' => 'ccl', 'Ciclev10015131m.g' => 'ccl', 'Ciclev10015580m.g' => 'ccl', 'Ciclev10028359m.g' => 'ccl', 'Ciclev10028573m.g' => 'ccl', 'CiPaw.03G159300' => 'cil', 'CiPaw.04G115100' => 'cil', 'CiPaw.09G092800' => 'cil', 'CiPaw.10G071800' => 'cil', 'CiPaw.13G105800' => 'cil', 'CiPaw.13G141000' => 'cil', 'CiPaw.14G103400' => 'cil', 'ClCG01G012700' => 'cla', 'ClCG01G012720' => 'cla', 'ClCG01G021920' => 'cla', 'ClCG02G008870' => 'cla', 'ClCG02G020840' => 'cla', 'ClCG02G021930' => 'cla', 'COL.COLO4_19302' => 'col', 'COL.COLO4_25262' => 'col', 'COL.COLO4_31788' => 'col', 'Cpa.g.c34684' => 'cpa', 'Cpa.g.c36520.1' => 'cpa', 'Cpa.g.c45626' => 'cpa', 'Cpa.g.sc121.17' => 'cpa', 'Cpa.g.sc13.22' => 'cpa', 'Cpa.g.sc87.88' => 'cpa', 'Cre06.g261800' => 'cre', 'CsaV3_1G014500' => 'csa', 'CsaV3_1G014510' => 'csa', 'CsaV3_2G034880' => 'csa', 'CsaV3_6G014760' => 'csa', 'CsaV3_6G021500' => 'csa', 'CsaV3_6G048980' => 'csa', 'CSS0002511' => 'camsi', 'CSS0007556' => 'camsi', 'CSS0008532' => 'camsi', 'CSS0009709' => 'camsi', 'CSS0010486' => 'camsi', 'CSS0016768' => 'camsi', 'CSS0023512' => 'camsi', 'CSS0025341' => 'camsi', 'CSS0027999' => 'camsi', 'CSS0028944' => 'camsi', 'CSS0032292' => 'camsi', 'CSS0032464' => 'camsi', 'CSS0037153' => 'camsi', 'CSS0039256' => 'camsi', 'CSS0048392' => 'camsi', 'CSS0050458' => 'camsi', 'DCAR_004224' => 'dca', 'DCAR_006147' => 'dca', 'DCAR_006465' => 'dca', 'DCAR_008159' => 'dca', 'DCAR_012164' => 'dca', 'DCAR_019764' => 'dca', 'Dinv05418' => 'din', 'Dinv10839' => 'din', 'Dinv12521' => 'din', 'Dinv13900' => 'din', 'Dinv29426' => 'din', 'Duzib150G0263' => 'dzi', 'Duzib168G1178' => 'dzi', 'Duzib168G1924' => 'dzi', 'Duzib170G0299' => 'dzi', 'Duzib170G0813' => 'dzi', 'Duzib235G1128' => 'dzi', 'Duzib248G1060' => 'dzi', 'ECA232G1910' => 'eca', 'ECA233G4621' => 'eca', 'ECA238G1216' => 'eca', 'ECA238G1784' => 'eca', 'ECA248G1242' => 'eca', 'EL10Ac8g20071' => 'bvu', 'EL10Ac9g21086' => 'bvu', 'EL10Ac9g22407' => 'bvu', 'EL10Ac9g22412' => 'bvu', 'Eucgr.A01119' => 'egr', 'Eucgr.E04043' => 'egr', 'Eucgr.J00428' => 'egr', 'Eucgr.J00958' => 'egr', 'FAN11G3091' => 'fan', 'FAN11G3651' => 'fan', 'FAN16G2566' => 'fan', 'FAN21G3155' => 'fan', 'FAN21G3400' => 'fan', 'FAN21G3543' => 'fan', 'FAN25G0234' => 'fan', 'FAN25G1422' => 'fan', 'FAN25G3392' => 'fan', 'FvH4_3g01940' => 'fve', 'FvH4_3g29870' => 'fve', 'FvH4_3g33680' => 'fve', 'Glyma.09G004200' => 'gma', 'Glyma.11G151288' => 'gma', 'Glyma.11G189100' => 'gma', 'Glyma.12G072500' => 'gma', 'Glyma.12G085500' => 'gma', 'Glyma.12G181800' => 'gma', 'Glyma.12G193000' => 'gma', 'Glyma.13G309300' => 'gma', 'Glyma.13G319000' => 'gma', 'Glyma.17G012600' => 'gma', 'Gohir.A06G148600' => 'ghi', 'Gohir.A07G115800' => 'ghi', 'Gohir.A08G003600' => 'ghi', 'Gohir.A09G093300' => 'ghi', 'Gohir.A09G105400' => 'ghi', 'Gohir.A09G105500' => 'ghi', 'Gohir.D06G154600' => 'ghi', 'Gohir.D07G120200' => 'ghi', 'Gohir.D08G013900' => 'ghi', 'Gohir.D09G093100' => 'ghi', 'Gohir.D09G102200' => 'ghi', 'Gohir.D09G102300' => 'ghi', 'Gorai.001G129400' => 'gra', 'Gorai.004G008200' => 'gra', 'Gorai.006G109800' => 'gra', 'Gorai.006G119500' => 'gra', 'Gorai.006G121300' => 'gra', 'Gorai.010G180700' => 'gra', 'GSVIVG01012716001' => 'vvi', 'GSVIVG01025118001' => 'vvi', 'GSVIVG01030439001' => 'vvi', 'GSVIVG01031397001' => 'vvi', 'HanXRQChr01g0004201' => 'han', 'HanXRQChr02g0054941' => 'han', 'HanXRQChr05g0141811' => 'han', 'HanXRQChr07g0197751' => 'han', 'HanXRQChr11g0346691' => 'han', 'HanXRQChr13g0396971' => 'han', 'HanXRQChr14g0432951' => 'han', 'HanXRQChr14g0452001' => 'han', 'HanXRQChr15g0496681' => 'han', 'HanXRQChr17g0557491' => 'han', 'HanXRQChr17g0557501' => 'han', 'Haze_06809' => 'cav', 'Haze_12852' => 'cav', 'Haze_15850' => 'cav', 'Haze_23446' => 'cav', 'Haze_23942' => 'cav', 'Haze_23943' => 'cav', 'Hma1.2p1_0091F.1_g046450' => 'hma', 'Hma1.2p1_0128F.1_g059910' => 'hma', 'Hma1.2p1_0249F.1_g102260' => 'hma', 'Hma1.2p1_0453F.1_g156190' => 'hma', 'Hma1.2p1_0695F.1_g204380' => 'hma', 'Hma1.2p1_0749F.1_g212650' => 'hma', 'Hma1.2p1_2156F.1_g315420' => 'hma', 'Hma1.2p1_2686F.1_g326940' => 'hma', 'HPP92_006428' => 'vpl', 'HPP92_012069' => 'vpl', 'HPP92_014129' => 'vpl', 'HPP92_014133' => 'vpl', 'HPP92_017315' => 'vpl', 'HPP92_026445' => 'vpl', 'HPP92_026446' => 'vpl', 'Hund00774' => 'sun', 'Hund07682' => 'sun', 'Hund21413' => 'sun', 'Hund23462' => 'sun', 'Hund23463' => 'sun', 'Lalb_Chr03g0027911' => 'lal', 'Lalb_Chr13g0304271' => 'lal', 'Lalb_Chr19g0137471' => 'lal', 'Lalb_Chr22g0350651' => 'lal', 'Lalb_Chr24g0395151' => 'lal', 'Lj1A1231T40' => 'lonja', 'Lj1A221T48' => 'lonja', 'Lj1C924T12' => 'lonja', 'Lj2C993G6' => 'lonja', 'Lj3g0005790' => 'lja', 'Lj3g0015432' => 'lja', 'Lj3g0017722' => 'lja', 'Lj3g0018497' => 'lja', 'Lj4g0025071' => 'lja', 'Lsat_1_v5_gn_1_129680' => 'lsa', 'Lsat_1_v5_gn_2_25321' => 'lsa', 'Lsat_1_v5_gn_2_95461' => 'lsa', 'Lsat_1_v5_gn_4_159620' => 'lsa', 'Lsat_1_v5_gn_6_41301' => 'lsa', 'Lsat_1_v5_gn_6_74660' => 'lsa', 'Lsat_1_v5_gn_7_11520' => 'lsa', 'Lsat_1_v5_gn_9_67680' => 'lsa', 'Manes.04G008300' => 'mes', 'Manes.04G008400' => 'mes', 'Manes.04G026500' => 'mes', 'Manes.10G135300' => 'mes', 'Manes.11G157300' => 'mes', 'Manes.12G074000' => 'mes', 'Manes.16G006200' => 'mes', 'Manes.17G026400' => 'mes', 'Mapoly0024s0086' => 'mpo', 'Mapoly0024s0087' => 'mpo', 'Mapoly0071s0057' => 'mpo', 'Mapoly0204s0012' => 'mpo', 'MBI04_g37681_MAGBIO' => 'mbi', 'MBI05_g17779_MAGBIO' => 'mbi', 'MBI12_g31184_MAGBIO' => 'mbi', 'MBI17_g11083_MAGBIO' => 'mbi', 'MBI18_g03883_MAGBIO' => 'mbi', 'MBI18_g28940_MAGBIO' => 'mbi', 'MCO01G690' => 'mco', 'MD03G1109900' => 'mdo', 'MD03G1134800' => 'mdo', 'MD05G1348000' => 'mdo', 'MD10G1322400' => 'mdo', 'MD11G1123300' => 'mdo', 'MD11G1157600' => 'mdo', 'Medtr2g084875' => 'mtr', 'Medtr2g088130' => 'mtr', 'Medtr4g055310' => 'mtr', 'Medtr4g061070' => 'mtr', 'Medtr4g132250' => 'mtr', 'MELO3C004795.2' => 'cme', 'MELO3C004797.2' => 'cme', 'MELO3C007396.2' => 'cme', 'MELO3C019277.2' => 'cme', 'MELO3C021449.2' => 'cme', 'MELO3C025736.2' => 'cme', 'Migut.D02175' => 'egut', 'Migut.H01573' => 'egut', 'Migut.M01327' => 'egut', 'Migut.N02513' => 'egut', 'MSTRG.14638' => 'ama', 'MSTRG.18632' => 'ama', 'MSTRG.7203' => 'ama', 'Nitab4.5_0000533g0140' => 'nta', 'Nitab4.5_0000888g0150' => 'nta', 'Nitab4.5_0001453g0040' => 'nta', 'Nitab4.5_0002827g0090' => 'nta', 'Nitab4.5_0003082g0040' => 'nta', 'Nitab4.5_0007799g0040' => 'nta', 'Nitab4.5_0008983g0010' => 'nta', 'Nitab4.5_0009017g0020' => 'nta', 'Nn1g02132' => 'nnu', 'Nn1g03492' => 'nnu', 'Nn1g03493' => 'nnu', 'Nn1g03494' => 'nnu', 'Nn1g07164' => 'nnu', 'Nn1g07291' => 'nnu', 'Nn2g10655' => 'nnu', 'Nn2g11652' => 'nnu', 'Nn2g14008' => 'nnu', 'Nn3g17476' => 'nnu', 'Nn3g17477' => 'nnu', 'Nn4g22370' => 'nnu', 'Nn4g25255' => 'nnu', 'Nn5g27755' => 'nnu', 'Nn6g34260' => 'nnu', 'Nn6g35041' => 'nnu', 'Oeu005924.1' => 'oeu', 'Oeu008383.1' => 'oeu', 'Oeu014928.1' => 'oeu', 'Oeu019889.1' => 'oeu', 'Oeu022271.1' => 'oeu', 'Oeu025271.1' => 'oeu', 'Oeu036302.1' => 'oeu', 'Oeu044100.1' => 'oeu', 'Os01g0528300' => 'osa', 'Os03g0286200' => 'osa', 'Os04g0406600' => 'osa', 'Os07g0512000' => 'osa', 'Os07g0694600' => 'osa', 'Os08g0411000' => 'osa', 'Os09g0565700' => 'osa', 'Os09g0566050' => 'osa', 'Os10g0523700' => 'osa', 'Peaxi162Scf00002g00514' => 'pax', 'Peaxi162Scf00047g01817' => 'pax', 'Peaxi162Scf00114g00001' => 'pax', 'Peaxi162Scf00147g00613' => 'pax', 'Peaxi162Scf00389g00425' => 'pax', 'PGR042G1139' => 'pgr', 'PGR042G3273' => 'pgr', 'PGR102G2180' => 'pgr', 'PGR119G0234' => 'pgr', 'PGR119G0668' => 'pgr', 'PGSC0003DMG400007122' => 'stu', 'PGSC0003DMG400016478' => 'stu', 'PGSC0003DMG400025374' => 'stu', 'PGSC0003DMG400026536' => 'stu', 'Phvul.003G079600' => 'pvu', 'Phvul.005G115600' => 'pvu', 'Phvul.005G127100' => 'pvu', 'Phvul.006G149500' => 'pvu', 'Phvul.006G149600' => 'pvu', 'Phvul.011G071800' => 'pvu', 'Phvul.011G090400' => 'pvu', 'Potri.004G013400' => 'ptr', 'Potri.004G188100' => 'ptr', 'Potri.008G195500' => 'ptr', 'Potri.009G148800' => 'ptr', 'Potri.011G004700' => 'ptr', 'Pp3c17_22810' => 'ppa', 'Pp3c18_4480' => 'ppa', 'Pp3c19_13030' => 'ppa', 'Pp3c1_33620' => 'ppa', 'Pp3c2_9380' => 'ppa', 'PRCOL_00001023' => 'pco', 'Prupe.3G216300' => 'ppe', 'Prupe.4G019500' => 'ppe', 'Prupe.6G092500' => 'ppe', 'Prupe.6G119200' => 'ppe', 'Psat0s1945g0080' => 'psa', 'Psat0s4167g0040' => 'psa', 'Psat1g185800' => 'psa', 'Psat4g006440' => 'psa', 'Psat4g006480' => 'psa', 'Psat4g168120' => 'psa', 'Psat5g255680' => 'psa', 'Psat5g261760' => 'psa', 'Psat7g222120' => 'psa', 'PSO063G7252' => 'pso', 'PSO170G4778' => 'pso', 'PSO210G2249' => 'pso', 'PSO339G2411' => 'pso', 'PSO339G2457' => 'pso', 'PSO339G2854' => 'pso', 'PSO339G4288' => 'pso', 'PSO339G4615' => 'pso', 'PSO384G2796' => 'pso', 'PSO384G2940' => 'pso', 'PSO384G4227' => 'pso', 'PSO478G1425' => 'pso', 'PSO541G3863' => 'pso', 'PSO675G0507' => 'pso', 'PSO782G0338' => 'pso', 'PSO832G0644' => 'pso', 'QL01p013664' => 'qlo', 'QL01p036598' => 'qlo', 'QL05p072984' => 'qlo', 'QL08p005768' => 'qlo', 'QL08p032743' => 'qlo', 'QL93p0073_0439' => 'qlo', 'QL93p0073_0444' => 'qlo', 'RcHm_v2.0_Chr5g0002851' => 'rch', 'RcHm_v2.0_Chr5g0055201' => 'rch', 'RcHm_v2.0_Chr5g0061191' => 'rch', 'RcHm_v2.0_Chr7g0203231' => 'rch', 'Rhsim01G0208100' => 'rsi', 'Rhsim01G0208200' => 'rsi', 'Rhsim02G0106500' => 'rsi', 'Rhsim03G0107900' => 'rsi', 'Rhsim06G0163400' => 'rsi', 'Rhsim13G0105200' => 'rsi', 'Sabra04G0006300' => 'sbr', 'Sabra04G0127000' => 'sbr', 'Sabra08G0148700' => 'sbr', 'Sabra09G0117400' => 'sbr', 'SalBow1G3326' => 'sbo', 'SalBow3G3228' => 'sbo', 'SalBow6G1634' => 'sbo', 'SalBow6G3603' => 'sbo', 'SalBow6G5266' => 'sbo', 'SalBow7G2265' => 'sbo', 'SalBow8G0850' => 'sbo', 'SalBow8G2592' => 'sbo', 'Sc05g0009240' => 'sci', 'Sc12g0002300' => 'sci', 'Sc21g0000100' => 'sci', 'Sc21g0004720' => 'sci', 'Sed0002949' => 'sed', 'Sed0004114' => 'sed', 'Sed0004306' => 'sed', 'Sed0006172' => 'sed', 'Sed0008413' => 'sed', 'Sed0013809' => 'sed', 'Sed0019556' => 'sed', 'SEGI_03570' => 'sgi', 'SEGI_07859' => 'sgi', 'SEGI_15042' => 'sgi', 'SEGI_16263' => 'sgi', 'SEGI_16552' => 'sgi', 'SEGI_24331' => 'sgi', 'SEGI_27316' => 'sgi', 'SEGI_29521' => 'sgi', 'SEGI_41342' => 'sgi', 'SGA_v2.0_scaffold27G11617' => 'sas', 'SGA_v2.0_scaffold316G48428' => 'sas', 'SGA_v2.0_scaffold49G18261' => 'sas', 'SGA_v2.0_scaffold7G03831' => 'sas', 'SGA_v2.0_scaffold93G28359' => 'sas', 'SHI02210' => 'shi', 'SHI06028' => 'shi', 'SHI06321' => 'shi', 'SMO111G0012' => 'smo', 'SMO228G0080' => 'smo', 'SMO356G0756' => 'smo', 'Solyc02g080620.3' => 'sly', 'Solyc06g074530.1' => 'sly', 'Solyc11g066890.1' => 'sly', 'Solyc11g072520.3' => 'sly', 'Sopen02g025330' => 'spe', 'Sopen06g031000' => 'spe', 'Sopen09g008240' => 'spe', 'Sopen09g025210' => 'spe', 'Sopen11g026600' => 'spe', 'Sopen11g030170' => 'spe', 'Sp1g10420' => 'spa', 'Sp3g06570' => 'spa', 'Sp4g10660' => 'spa', 'Sp5g16460' => 'spa', 'Sp6g22710' => 'spa', 'TAR365G0112' => 'tar', 'TAR369G0717' => 'tar', 'TAR374G0976' => 'tar', 'TAR623G1128' => 'tar', 'TAR626G1937' => 'tar', 'TAR627G0123' => 'tar', 'TAR628G0305' => 'tar', 'TAR636G1176' => 'tar', 'TAR636G2442' => 'tar', 'THA.LOC104800556' => 'tha', 'THA.LOC104809501' => 'tha', 'THA.LOC104815126' => 'tha', 'THA.LOC104815732' => 'tha', 'THA.LOC104823528' => 'tha', 'Thecc.02G365600' => 'tca', 'Thecc.06G222300' => 'tca', 'Thecc.09G261800' => 'tca', 'Thecc.09G291400' => 'tca', 'Thhalv10003028m.g' => 'esa', 'Thhalv10007886m.g' => 'esa', 'Thhalv10016085m.g' => 'esa', 'Thhalv10016681m.g' => 'esa', 'Thhalv10020951m.g' => 'esa', 'TPR.G15598' => 'tpr', 'TPR.G29305' => 'tpr', 'TPR.G32395' => 'tpr', 'TPR.G36998' => 'tpr', 'TPR.G4227' => 'tpr', 'TWI18G1433' => 'twi', 'TWI31G0755' => 'twi', 'TWI38G0912' => 'twi', 'TWI75G1097' => 'twi', 'TWI75G1619' => 'twi', 'TWI79G1336' => 'twi', 'unitig_0.g943' => 'ugi', 'unitig_0.g944' => 'ugi', 'unitig_22.g6646' => 'ugi', 'unitig_37.g12681' => 'ugi', 'unitig_8.g3290' => 'ugi', 'vmacro03278' => 'vma', 'vmacro12197' => 'vma', 'vmacro14478' => 'vma', 'vmacro15787' => 'vma', 'vmacro15789' => 'vma', 'vmacro15790' => 'vma', 'vmacro15806' => 'vma', 'vmacro22907' => 'vma', 'vmacro22908' => 'vma', 'vmacro22909' => 'vma', 'vmacro23108' => 'vma', 'VMungo0540G0540' => 'vmu', 'VMungo0540G2468' => 'vmu', 'VMungo1080G0390' => 'vmu', 'VMungo1080G1165' => 'vmu', 'VMungo1127G0170' => 'vmu', 'VMungo1127G2099' => 'vmu', 'VMungo1215G3013' => 'vmu', 'Zm00001eb013110' => 'zma', 'Zm00001eb084260' => 'zma', 'Zm00001eb096110' => 'zma', 'Zm00001eb217510' => 'zma', 'Zm00001eb322550' => 'zma', 'Zm00001eb390770' => 'zma', 'Zm00001eb397170' => 'zma', 'Zm00001eb404610' => 'zma', 'Zm00001eb421790' => 'zma' ) $gf_id = 'HOM05D000911' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000911' ) $data_identifier = 'HOM05D000911' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 16, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 5, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 6, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 8, 'nnu' => (int) 16, 'oeu' => (int) 8, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 5, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 16, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421790' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000911', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27780' => 'bna', 'A03p35380' => 'bna', 'A04p21160' => 'bna', 'A05p40570' => 'bna', 'A06p26900' => 'bna', 'A08p33230' => 'bna', 'A09p65960' => 'bna', 'A10p18290' => 'bna', 'Aa31LG1G12990' => 'aar', 'Aa31LG1G2980' => 'aar', 'Aa31LG4G14320' => 'aar', 'Aa31LG7G11800' => 'aar', 'Aa31sc36G50' => 'aar', 'Aa31sc36G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3721' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5459' => 'aag', 'Actinidia03028' => 'ach', 'Actinidia03753' => 'ach', 'Actinidia04187' => 'ach', 'Actinidia05509' => 'ach', 'Actinidia24180' => 'ach', 'Actinidia26906' => 'ach', 'Actinidia37097' => 'ach', 'Actinidia38249' => 'ach', 'Ah.01g003470' => 'amhyb', 'Ah.01g004580' => 'amhyb', 'Ah.01g014850' => 'amhyb', 'Ah.01g016830' => 'amhyb', 'Ah.14g088000' => 'amhyb', 'AL1G22980' => 'aly', 'AL3G18990' => 'aly', 'AL4G22440' => 'aly', 'AL4G33180' => 'aly', 'AL5G22920' => 'aly', 'AL6G33660' => 'aly', 'AL8G20720' => 'aly', 'Aqoxy1G00935' => 'aox', 'Aqoxy1G02094' => 'aox', 'Aqoxy2G01239' => 'aox', 'Aqoxy4G01870' => 'aox', 'Aqoxy7G00450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.36ZVTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71EM27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5D6C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH3WRE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3NCM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RIM768' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YB5YRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z36GDV' => 'arhy', 'AT1G08250' => 'ath', 'AT1G11790' => 'ath', 'AT2G27820' => 'ath', 'AT3G07630' => 'ath', 'AT3G44720' => 'ath', 'AT5G22630' => 'ath', 'ATR0693G304' => 'atr', 'ATR0794G109' => 'atr', 'ATR0820G120' => 'atr', 'ATR1159G064' => 'atr', 'Atru.chr10.2239' => 'acertr', 'Atru.chr3.3371' => 'acertr', 'Atru.chr6.3202' => 'acertr', 'AUR62006499' => 'cqu', 'AUR62012718' => 'cqu', 'AUR62021938' => 'cqu', 'AUR62023932' => 'cqu', 'AUR62025034' => 'cqu', 'AUR62025035' => 'cqu', 'AUR62038307' => 'cqu', 'AUR62043466' => 'cqu', 'BcaB02g10748' => 'bca', 'BcaB03g13231' => 'bca', 'BcaB03g14689' => 'bca', 'BcaB05g22716' => 'bca', 'BcaB06g28172' => 'bca', 'BcaB08g36413' => 'bca', 'BcaC01g02186' => 'bca', 'BcaC01g04272' => 'bca', 'BcaC02g08080' => 'bca', 'BcaC02g08227' => 'bca', 'BcaC03g13901' => 'bca', 'BcaC04g19593' => 'bca', 'BcaC04g20874' => 'bca', 'BcaC05g29557' => 'bca', 'BcaC06g35505' => 'bca', 'BcaC07g41954' => 'bca', 'BcaC07g41955' => 'bca', 'BcaC07g41956' => 'bca', 'BcaC07g42519' => 'bca', 'BcaC07g42520' => 'bca', 'BcaC07g42523' => 'bca', 'BcaC07g42524' => 'bca', 'BcaC07g42525' => 'bca', 'BcaC08g47480' => 'bca', 'BcaC08g47481' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00530' => 'bna', 'BolC2t07178H' => 'bol', 'BolC3t16567H' => 'bol', 'BolC4t27234H' => 'bol', 'BolC5t29728H' => 'bol', 'BolC5t34622H' => 'bol', 'BolC6t40321H' => 'bol', 'BolC7t42028H' => 'bol', 'BolC8t49125H' => 'bol', 'BolC8t52538H' => 'bol', 'BolC8t52539H' => 'bol', 'BolC9t56681H' => 'bol', 'BolC9t58266H' => 'bol', 'BolSC21t60294H' => 'bol', 'BraA02t05670Z' => 'bra', 'BraA03t12716Z' => 'bra', 'BraA04t17685Z' => 'bra', 'BraA05t22788Z' => 'bra', 'BraA06t24032Z' => 'bra', 'BraA06t25625Z' => 'bra', 'BraA07t27930Z' => 'bra', 'BraA08t35242Z' => 'bra', 'BraA09t38609Z' => 'bra', 'BraA10t43905Z' => 'bra', 'C02p11060' => 'bna', 'C03p42990' => 'bna', 'C03p67310' => 'bna', 'C04p56990' => 'bna', 'C04p58660' => 'bna', 'C05p09890' => 'bna', 'C05p59680' => 'bna', 'C06p19830' => 'bna', 'C06p53040' => 'bna', 'C07p15230' => 'bna', 'C08p50070' => 'bna', 'C08p50090' => 'bna', 'C09p38330' => 'bna', 'C09p53940' => 'bna', 'CAN.G1014.1' => 'can', 'CAN.G644.30' => 'can', 'CAN.G84.47' => 'can', 'CAN.G919.8' => 'can', 'CANSAT54G0113' => 'cansat', 'CANSAT54G1286' => 'cansat', 'CANSAT64G1020' => 'cansat', 'CARHR008080' => 'chi', 'CARHR008090' => 'chi', 'CARHR012130' => 'chi', 'CARHR038390' => 'chi', 'CARHR082330' => 'chi', 'CARHR120520' => 'chi', 'CARHR151470' => 'chi', 'CARHR190950' => 'chi', 'Carub.0001s0760' => 'cru', 'Carub.0001s1146' => 'cru', 'Carub.0003s0721' => 'cru', 'Carub.0004s0858' => 'cru', 'Carub.0005s1040' => 'cru', 'Carub.0006s2035' => 'cru', 'Carub.0015s0005' => 'cru', 'Ca_01607_v3' => 'car', 'Ca_01677_v3' => 'car', 'Ca_06087_v3' => 'car', 'Ca_19238_v3' => 'car', 'Ca_19373_v3' => 'car', 'Ca_21079_v3' => 'car', 'CBR_g54016' => 'cbr', 'CBR_g54018' => 'cbr', 'CBR_g54020' => 'cbr', 'Cc01_g09780' => 'ccan', 'Cc01_g11680' => 'ccan', 'Cc02_g15610' => 'ccan', 'Cc05_g04350' => 'ccan', 'Cc09_g01580' => 'ccan', 'CDE01G0795' => 'cde', 'CDE02G2024' => 'cde', 'CDE02G2260' => 'cde', 'CDE02G4561' => 'cde', 'CDE05G2733' => 'cde', 'CDE05G3422' => 'cde', 'CDE06G2003' => 'cde', 'CDE08G0576' => 'cde', 'CDE09G0048' => 'cde', 'CDE11G0805' => 'cde', 'Cfa003644' => 'cfa', 'Cfa006290' => 'cfa', 'Cfa010080' => 'cfa', 'Cfa011376' => 'cfa', 'Cfa011576' => 'cfa', 'Cfa011577' => 'cfa', 'Cfa014389' => 'cfa', 'Ciclev10006044m.g' => 'ccl', 'Ciclev10006954m.g' => 'ccl', 'Ciclev10015131m.g' => 'ccl', 'Ciclev10015580m.g' => 'ccl', 'Ciclev10028359m.g' => 'ccl', 'Ciclev10028573m.g' => 'ccl', 'CiPaw.03G159300' => 'cil', 'CiPaw.04G115100' => 'cil', 'CiPaw.09G092800' => 'cil', 'CiPaw.10G071800' => 'cil', 'CiPaw.13G105800' => 'cil', 'CiPaw.13G141000' => 'cil', 'CiPaw.14G103400' => 'cil', 'ClCG01G012700' => 'cla', 'ClCG01G012720' => 'cla', 'ClCG01G021920' => 'cla', 'ClCG02G008870' => 'cla', 'ClCG02G020840' => 'cla', 'ClCG02G021930' => 'cla', 'COL.COLO4_19302' => 'col', 'COL.COLO4_25262' => 'col', 'COL.COLO4_31788' => 'col', 'Cpa.g.c34684' => 'cpa', 'Cpa.g.c36520.1' => 'cpa', 'Cpa.g.c45626' => 'cpa', 'Cpa.g.sc121.17' => 'cpa', 'Cpa.g.sc13.22' => 'cpa', 'Cpa.g.sc87.88' => 'cpa', 'Cre06.g261800' => 'cre', 'CsaV3_1G014500' => 'csa', 'CsaV3_1G014510' => 'csa', 'CsaV3_2G034880' => 'csa', 'CsaV3_6G014760' => 'csa', 'CsaV3_6G021500' => 'csa', 'CsaV3_6G048980' => 'csa', 'CSS0002511' => 'camsi', 'CSS0007556' => 'camsi', 'CSS0008532' => 'camsi', 'CSS0009709' => 'camsi', 'CSS0010486' => 'camsi', 'CSS0016768' => 'camsi', 'CSS0023512' => 'camsi', 'CSS0025341' => 'camsi', 'CSS0027999' => 'camsi', 'CSS0028944' => 'camsi', 'CSS0032292' => 'camsi', 'CSS0032464' => 'camsi', 'CSS0037153' => 'camsi', 'CSS0039256' => 'camsi', 'CSS0048392' => 'camsi', 'CSS0050458' => 'camsi', 'DCAR_004224' => 'dca', 'DCAR_006147' => 'dca', 'DCAR_006465' => 'dca', 'DCAR_008159' => 'dca', 'DCAR_012164' => 'dca', 'DCAR_019764' => 'dca', 'Dinv05418' => 'din', 'Dinv10839' => 'din', 'Dinv12521' => 'din', 'Dinv13900' => 'din', 'Dinv29426' => 'din', 'Duzib150G0263' => 'dzi', 'Duzib168G1178' => 'dzi', 'Duzib168G1924' => 'dzi', 'Duzib170G0299' => 'dzi', 'Duzib170G0813' => 'dzi', 'Duzib235G1128' => 'dzi', 'Duzib248G1060' => 'dzi', 'ECA232G1910' => 'eca', 'ECA233G4621' => 'eca', 'ECA238G1216' => 'eca', 'ECA238G1784' => 'eca', 'ECA248G1242' => 'eca', 'EL10Ac8g20071' => 'bvu', 'EL10Ac9g21086' => 'bvu', 'EL10Ac9g22407' => 'bvu', 'EL10Ac9g22412' => 'bvu', 'Eucgr.A01119' => 'egr', 'Eucgr.E04043' => 'egr', 'Eucgr.J00428' => 'egr', 'Eucgr.J00958' => 'egr', 'FAN11G3091' => 'fan', 'FAN11G3651' => 'fan', 'FAN16G2566' => 'fan', 'FAN21G3155' => 'fan', 'FAN21G3400' => 'fan', 'FAN21G3543' => 'fan', 'FAN25G0234' => 'fan', 'FAN25G1422' => 'fan', 'FAN25G3392' => 'fan', 'FvH4_3g01940' => 'fve', 'FvH4_3g29870' => 'fve', 'FvH4_3g33680' => 'fve', 'Glyma.09G004200' => 'gma', 'Glyma.11G151288' => 'gma', 'Glyma.11G189100' => 'gma', 'Glyma.12G072500' => 'gma', 'Glyma.12G085500' => 'gma', 'Glyma.12G181800' => 'gma', 'Glyma.12G193000' => 'gma', 'Glyma.13G309300' => 'gma', 'Glyma.13G319000' => 'gma', 'Glyma.17G012600' => 'gma', 'Gohir.A06G148600' => 'ghi', 'Gohir.A07G115800' => 'ghi', 'Gohir.A08G003600' => 'ghi', 'Gohir.A09G093300' => 'ghi', 'Gohir.A09G105400' => 'ghi', 'Gohir.A09G105500' => 'ghi', 'Gohir.D06G154600' => 'ghi', 'Gohir.D07G120200' => 'ghi', 'Gohir.D08G013900' => 'ghi', 'Gohir.D09G093100' => 'ghi', 'Gohir.D09G102200' => 'ghi', 'Gohir.D09G102300' => 'ghi', 'Gorai.001G129400' => 'gra', 'Gorai.004G008200' => 'gra', 'Gorai.006G109800' => 'gra', 'Gorai.006G119500' => 'gra', 'Gorai.006G121300' => 'gra', 'Gorai.010G180700' => 'gra', 'GSVIVG01012716001' => 'vvi', 'GSVIVG01025118001' => 'vvi', 'GSVIVG01030439001' => 'vvi', 'GSVIVG01031397001' => 'vvi', 'HanXRQChr01g0004201' => 'han', 'HanXRQChr02g0054941' => 'han', 'HanXRQChr05g0141811' => 'han', 'HanXRQChr07g0197751' => 'han', 'HanXRQChr11g0346691' => 'han', 'HanXRQChr13g0396971' => 'han', 'HanXRQChr14g0432951' => 'han', 'HanXRQChr14g0452001' => 'han', 'HanXRQChr15g0496681' => 'han', 'HanXRQChr17g0557491' => 'han', 'HanXRQChr17g0557501' => 'han', 'Haze_06809' => 'cav', 'Haze_12852' => 'cav', 'Haze_15850' => 'cav', 'Haze_23446' => 'cav', 'Haze_23942' => 'cav', 'Haze_23943' => 'cav', 'Hma1.2p1_0091F.1_g046450' => 'hma', 'Hma1.2p1_0128F.1_g059910' => 'hma', 'Hma1.2p1_0249F.1_g102260' => 'hma', 'Hma1.2p1_0453F.1_g156190' => 'hma', 'Hma1.2p1_0695F.1_g204380' => 'hma', 'Hma1.2p1_0749F.1_g212650' => 'hma', 'Hma1.2p1_2156F.1_g315420' => 'hma', 'Hma1.2p1_2686F.1_g326940' => 'hma', 'HPP92_006428' => 'vpl', 'HPP92_012069' => 'vpl', 'HPP92_014129' => 'vpl', 'HPP92_014133' => 'vpl', 'HPP92_017315' => 'vpl', 'HPP92_026445' => 'vpl', 'HPP92_026446' => 'vpl', 'Hund00774' => 'sun', 'Hund07682' => 'sun', 'Hund21413' => 'sun', 'Hund23462' => 'sun', 'Hund23463' => 'sun', 'Lalb_Chr03g0027911' => 'lal', 'Lalb_Chr13g0304271' => 'lal', 'Lalb_Chr19g0137471' => 'lal', 'Lalb_Chr22g0350651' => 'lal', 'Lalb_Chr24g0395151' => 'lal', 'Lj1A1231T40' => 'lonja', 'Lj1A221T48' => 'lonja', 'Lj1C924T12' => 'lonja', 'Lj2C993G6' => 'lonja', 'Lj3g0005790' => 'lja', 'Lj3g0015432' => 'lja', 'Lj3g0017722' => 'lja', 'Lj3g0018497' => 'lja', 'Lj4g0025071' => 'lja', 'Lsat_1_v5_gn_1_129680' => 'lsa', 'Lsat_1_v5_gn_2_25321' => 'lsa', 'Lsat_1_v5_gn_2_95461' => 'lsa', 'Lsat_1_v5_gn_4_159620' => 'lsa', 'Lsat_1_v5_gn_6_41301' => 'lsa', 'Lsat_1_v5_gn_6_74660' => 'lsa', 'Lsat_1_v5_gn_7_11520' => 'lsa', 'Lsat_1_v5_gn_9_67680' => 'lsa', 'Manes.04G008300' => 'mes', 'Manes.04G008400' => 'mes', 'Manes.04G026500' => 'mes', 'Manes.10G135300' => 'mes', 'Manes.11G157300' => 'mes', 'Manes.12G074000' => 'mes', 'Manes.16G006200' => 'mes', 'Manes.17G026400' => 'mes', 'Mapoly0024s0086' => 'mpo', 'Mapoly0024s0087' => 'mpo', 'Mapoly0071s0057' => 'mpo', 'Mapoly0204s0012' => 'mpo', 'MBI04_g37681_MAGBIO' => 'mbi', 'MBI05_g17779_MAGBIO' => 'mbi', 'MBI12_g31184_MAGBIO' => 'mbi', 'MBI17_g11083_MAGBIO' => 'mbi', 'MBI18_g03883_MAGBIO' => 'mbi', 'MBI18_g28940_MAGBIO' => 'mbi', 'MCO01G690' => 'mco', 'MD03G1109900' => 'mdo', 'MD03G1134800' => 'mdo', 'MD05G1348000' => 'mdo', 'MD10G1322400' => 'mdo', 'MD11G1123300' => 'mdo', 'MD11G1157600' => 'mdo', 'Medtr2g084875' => 'mtr', 'Medtr2g088130' => 'mtr', 'Medtr4g055310' => 'mtr', 'Medtr4g061070' => 'mtr', 'Medtr4g132250' => 'mtr', 'MELO3C004795.2' => 'cme', 'MELO3C004797.2' => 'cme', 'MELO3C007396.2' => 'cme', 'MELO3C019277.2' => 'cme', 'MELO3C021449.2' => 'cme', 'MELO3C025736.2' => 'cme', 'Migut.D02175' => 'egut', 'Migut.H01573' => 'egut', 'Migut.M01327' => 'egut', 'Migut.N02513' => 'egut', 'MSTRG.14638' => 'ama', 'MSTRG.18632' => 'ama', 'MSTRG.7203' => 'ama', 'Nitab4.5_0000533g0140' => 'nta', 'Nitab4.5_0000888g0150' => 'nta', 'Nitab4.5_0001453g0040' => 'nta', 'Nitab4.5_0002827g0090' => 'nta', 'Nitab4.5_0003082g0040' => 'nta', 'Nitab4.5_0007799g0040' => 'nta', 'Nitab4.5_0008983g0010' => 'nta', 'Nitab4.5_0009017g0020' => 'nta', 'Nn1g02132' => 'nnu', 'Nn1g03492' => 'nnu', 'Nn1g03493' => 'nnu', 'Nn1g03494' => 'nnu', 'Nn1g07164' => 'nnu', 'Nn1g07291' => 'nnu', 'Nn2g10655' => 'nnu', 'Nn2g11652' => 'nnu', 'Nn2g14008' => 'nnu', 'Nn3g17476' => 'nnu', 'Nn3g17477' => 'nnu', 'Nn4g22370' => 'nnu', 'Nn4g25255' => 'nnu', 'Nn5g27755' => 'nnu', 'Nn6g34260' => 'nnu', 'Nn6g35041' => 'nnu', 'Oeu005924.1' => 'oeu', 'Oeu008383.1' => 'oeu', 'Oeu014928.1' => 'oeu', 'Oeu019889.1' => 'oeu', 'Oeu022271.1' => 'oeu', 'Oeu025271.1' => 'oeu', 'Oeu036302.1' => 'oeu', 'Oeu044100.1' => 'oeu', 'Os01g0528300' => 'osa', 'Os03g0286200' => 'osa', 'Os04g0406600' => 'osa', 'Os07g0512000' => 'osa', 'Os07g0694600' => 'osa', 'Os08g0411000' => 'osa', 'Os09g0565700' => 'osa', 'Os09g0566050' => 'osa', 'Os10g0523700' => 'osa', 'Peaxi162Scf00002g00514' => 'pax', 'Peaxi162Scf00047g01817' => 'pax', 'Peaxi162Scf00114g00001' => 'pax', 'Peaxi162Scf00147g00613' => 'pax', 'Peaxi162Scf00389g00425' => 'pax', 'PGR042G1139' => 'pgr', 'PGR042G3273' => 'pgr', 'PGR102G2180' => 'pgr', 'PGR119G0234' => 'pgr', 'PGR119G0668' => 'pgr', 'PGSC0003DMG400007122' => 'stu', 'PGSC0003DMG400016478' => 'stu', 'PGSC0003DMG400025374' => 'stu', 'PGSC0003DMG400026536' => 'stu', 'Phvul.003G079600' => 'pvu', 'Phvul.005G115600' => 'pvu', 'Phvul.005G127100' => 'pvu', 'Phvul.006G149500' => 'pvu', 'Phvul.006G149600' => 'pvu', 'Phvul.011G071800' => 'pvu', 'Phvul.011G090400' => 'pvu', 'Potri.004G013400' => 'ptr', 'Potri.004G188100' => 'ptr', 'Potri.008G195500' => 'ptr', 'Potri.009G148800' => 'ptr', 'Potri.011G004700' => 'ptr', 'Pp3c17_22810' => 'ppa', 'Pp3c18_4480' => 'ppa', 'Pp3c19_13030' => 'ppa', 'Pp3c1_33620' => 'ppa', 'Pp3c2_9380' => 'ppa', 'PRCOL_00001023' => 'pco', 'Prupe.3G216300' => 'ppe', 'Prupe.4G019500' => 'ppe', 'Prupe.6G092500' => 'ppe', 'Prupe.6G119200' => 'ppe', 'Psat0s1945g0080' => 'psa', 'Psat0s4167g0040' => 'psa', 'Psat1g185800' => 'psa', 'Psat4g006440' => 'psa', 'Psat4g006480' => 'psa', 'Psat4g168120' => 'psa', 'Psat5g255680' => 'psa', 'Psat5g261760' => 'psa', 'Psat7g222120' => 'psa', 'PSO063G7252' => 'pso', 'PSO170G4778' => 'pso', 'PSO210G2249' => 'pso', 'PSO339G2411' => 'pso', 'PSO339G2457' => 'pso', 'PSO339G2854' => 'pso', 'PSO339G4288' => 'pso', 'PSO339G4615' => 'pso', 'PSO384G2796' => 'pso', 'PSO384G2940' => 'pso', 'PSO384G4227' => 'pso', 'PSO478G1425' => 'pso', 'PSO541G3863' => 'pso', 'PSO675G0507' => 'pso', 'PSO782G0338' => 'pso', 'PSO832G0644' => 'pso', 'QL01p013664' => 'qlo', 'QL01p036598' => 'qlo', 'QL05p072984' => 'qlo', 'QL08p005768' => 'qlo', 'QL08p032743' => 'qlo', 'QL93p0073_0439' => 'qlo', 'QL93p0073_0444' => 'qlo', 'RcHm_v2.0_Chr5g0002851' => 'rch', 'RcHm_v2.0_Chr5g0055201' => 'rch', 'RcHm_v2.0_Chr5g0061191' => 'rch', 'RcHm_v2.0_Chr7g0203231' => 'rch', 'Rhsim01G0208100' => 'rsi', 'Rhsim01G0208200' => 'rsi', 'Rhsim02G0106500' => 'rsi', 'Rhsim03G0107900' => 'rsi', 'Rhsim06G0163400' => 'rsi', 'Rhsim13G0105200' => 'rsi', 'Sabra04G0006300' => 'sbr', 'Sabra04G0127000' => 'sbr', 'Sabra08G0148700' => 'sbr', 'Sabra09G0117400' => 'sbr', 'SalBow1G3326' => 'sbo', 'SalBow3G3228' => 'sbo', 'SalBow6G1634' => 'sbo', 'SalBow6G3603' => 'sbo', 'SalBow6G5266' => 'sbo', 'SalBow7G2265' => 'sbo', 'SalBow8G0850' => 'sbo', 'SalBow8G2592' => 'sbo', 'Sc05g0009240' => 'sci', 'Sc12g0002300' => 'sci', 'Sc21g0000100' => 'sci', 'Sc21g0004720' => 'sci', 'Sed0002949' => 'sed', 'Sed0004114' => 'sed', 'Sed0004306' => 'sed', 'Sed0006172' => 'sed', 'Sed0008413' => 'sed', 'Sed0013809' => 'sed', 'Sed0019556' => 'sed', 'SEGI_03570' => 'sgi', 'SEGI_07859' => 'sgi', 'SEGI_15042' => 'sgi', 'SEGI_16263' => 'sgi', 'SEGI_16552' => 'sgi', 'SEGI_24331' => 'sgi', 'SEGI_27316' => 'sgi', 'SEGI_29521' => 'sgi', 'SEGI_41342' => 'sgi', 'SGA_v2.0_scaffold27G11617' => 'sas', 'SGA_v2.0_scaffold316G48428' => 'sas', 'SGA_v2.0_scaffold49G18261' => 'sas', 'SGA_v2.0_scaffold7G03831' => 'sas', 'SGA_v2.0_scaffold93G28359' => 'sas', 'SHI02210' => 'shi', 'SHI06028' => 'shi', 'SHI06321' => 'shi', 'SMO111G0012' => 'smo', 'SMO228G0080' => 'smo', 'SMO356G0756' => 'smo', 'Solyc02g080620.3' => 'sly', 'Solyc06g074530.1' => 'sly', 'Solyc11g066890.1' => 'sly', 'Solyc11g072520.3' => 'sly', 'Sopen02g025330' => 'spe', 'Sopen06g031000' => 'spe', 'Sopen09g008240' => 'spe', 'Sopen09g025210' => 'spe', 'Sopen11g026600' => 'spe', 'Sopen11g030170' => 'spe', 'Sp1g10420' => 'spa', 'Sp3g06570' => 'spa', 'Sp4g10660' => 'spa', 'Sp5g16460' => 'spa', 'Sp6g22710' => 'spa', 'TAR365G0112' => 'tar', 'TAR369G0717' => 'tar', 'TAR374G0976' => 'tar', 'TAR623G1128' => 'tar', 'TAR626G1937' => 'tar', 'TAR627G0123' => 'tar', 'TAR628G0305' => 'tar', 'TAR636G1176' => 'tar', 'TAR636G2442' => 'tar', 'THA.LOC104800556' => 'tha', 'THA.LOC104809501' => 'tha', 'THA.LOC104815126' => 'tha', 'THA.LOC104815732' => 'tha', 'THA.LOC104823528' => 'tha', 'Thecc.02G365600' => 'tca', 'Thecc.06G222300' => 'tca', 'Thecc.09G261800' => 'tca', 'Thecc.09G291400' => 'tca', 'Thhalv10003028m.g' => 'esa', 'Thhalv10007886m.g' => 'esa', 'Thhalv10016085m.g' => 'esa', 'Thhalv10016681m.g' => 'esa', 'Thhalv10020951m.g' => 'esa', 'TPR.G15598' => 'tpr', 'TPR.G29305' => 'tpr', 'TPR.G32395' => 'tpr', 'TPR.G36998' => 'tpr', 'TPR.G4227' => 'tpr', 'TWI18G1433' => 'twi', 'TWI31G0755' => 'twi', 'TWI38G0912' => 'twi', 'TWI75G1097' => 'twi', 'TWI75G1619' => 'twi', 'TWI79G1336' => 'twi', 'unitig_0.g943' => 'ugi', 'unitig_0.g944' => 'ugi', 'unitig_22.g6646' => 'ugi', 'unitig_37.g12681' => 'ugi', 'unitig_8.g3290' => 'ugi', 'vmacro03278' => 'vma', 'vmacro12197' => 'vma', 'vmacro14478' => 'vma', 'vmacro15787' => 'vma', 'vmacro15789' => 'vma', 'vmacro15790' => 'vma', 'vmacro15806' => 'vma', 'vmacro22907' => 'vma', 'vmacro22908' => 'vma', 'vmacro22909' => 'vma', 'vmacro23108' => 'vma', 'VMungo0540G0540' => 'vmu', 'VMungo0540G2468' => 'vmu', 'VMungo1080G0390' => 'vmu', 'VMungo1080G1165' => 'vmu', 'VMungo1127G0170' => 'vmu', 'VMungo1127G2099' => 'vmu', 'VMungo1215G3013' => 'vmu', 'Zm00001eb013110' => 'zma', 'Zm00001eb084260' => 'zma', 'Zm00001eb096110' => 'zma', 'Zm00001eb217510' => 'zma', 'Zm00001eb322550' => 'zma', 'Zm00001eb390770' => 'zma', 'Zm00001eb397170' => 'zma', 'Zm00001eb404610' => 'zma', 'Zm00001eb421790' => 'zma' ), 'gf_id' => 'HOM05D000911', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000911' ), 'data_identifier' => 'HOM05D000911', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000911', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27780' => 'bna', 'A03p35380' => 'bna', 'A04p21160' => 'bna', 'A05p40570' => 'bna', 'A06p26900' => 'bna', 'A08p33230' => 'bna', 'A09p65960' => 'bna', 'A10p18290' => 'bna', 'Aa31LG1G12990' => 'aar', 'Aa31LG1G2980' => 'aar', 'Aa31LG4G14320' => 'aar', 'Aa31LG7G11800' => 'aar', 'Aa31sc36G50' => 'aar', 'Aa31sc36G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3721' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5459' => 'aag', 'Actinidia03028' => 'ach', 'Actinidia03753' => 'ach', 'Actinidia04187' => 'ach', 'Actinidia05509' => 'ach', 'Actinidia24180' => 'ach', 'Actinidia26906' => 'ach', 'Actinidia37097' => 'ach', 'Actinidia38249' => 'ach', 'Ah.01g003470' => 'amhyb', 'Ah.01g004580' => 'amhyb', 'Ah.01g014850' => 'amhyb', 'Ah.01g016830' => 'amhyb', 'Ah.14g088000' => 'amhyb', 'AL1G22980' => 'aly', 'AL3G18990' => 'aly', 'AL4G22440' => 'aly', 'AL4G33180' => 'aly', 'AL5G22920' => 'aly', 'AL6G33660' => 'aly', 'AL8G20720' => 'aly', 'Aqoxy1G00935' => 'aox', 'Aqoxy1G02094' => 'aox', 'Aqoxy2G01239' => 'aox', 'Aqoxy4G01870' => 'aox', 'Aqoxy7G00450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.36ZVTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71EM27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5D6C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH3WRE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3NCM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RIM768' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YB5YRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z36GDV' => 'arhy', 'AT1G08250' => 'ath', 'AT1G11790' => 'ath', 'AT2G27820' => 'ath', 'AT3G07630' => 'ath', 'AT3G44720' => 'ath', 'AT5G22630' => 'ath', 'ATR0693G304' => 'atr', 'ATR0794G109' => 'atr', 'ATR0820G120' => 'atr', 'ATR1159G064' => 'atr', 'Atru.chr10.2239' => 'acertr', 'Atru.chr3.3371' => 'acertr', 'Atru.chr6.3202' => 'acertr', 'AUR62006499' => 'cqu', 'AUR62012718' => 'cqu', 'AUR62021938' => 'cqu', 'AUR62023932' => 'cqu', 'AUR62025034' => 'cqu', 'AUR62025035' => 'cqu', 'AUR62038307' => 'cqu', 'AUR62043466' => 'cqu', 'BcaB02g10748' => 'bca', 'BcaB03g13231' => 'bca', 'BcaB03g14689' => 'bca', 'BcaB05g22716' => 'bca', 'BcaB06g28172' => 'bca', 'BcaB08g36413' => 'bca', 'BcaC01g02186' => 'bca', 'BcaC01g04272' => 'bca', 'BcaC02g08080' => 'bca', 'BcaC02g08227' => 'bca', 'BcaC03g13901' => 'bca', 'BcaC04g19593' => 'bca', 'BcaC04g20874' => 'bca', 'BcaC05g29557' => 'bca', 'BcaC06g35505' => 'bca', 'BcaC07g41954' => 'bca', 'BcaC07g41955' => 'bca', 'BcaC07g41956' => 'bca', 'BcaC07g42519' => 'bca', 'BcaC07g42520' => 'bca', 'BcaC07g42523' => 'bca', 'BcaC07g42524' => 'bca', 'BcaC07g42525' => 'bca', 'BcaC08g47480' => 'bca', 'BcaC08g47481' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00530' => 'bna', 'BolC2t07178H' => 'bol', 'BolC3t16567H' => 'bol', 'BolC4t27234H' => 'bol', 'BolC5t29728H' => 'bol', 'BolC5t34622H' => 'bol', 'BolC6t40321H' => 'bol', 'BolC7t42028H' => 'bol', 'BolC8t49125H' => 'bol', 'BolC8t52538H' => 'bol', 'BolC8t52539H' => 'bol', 'BolC9t56681H' => 'bol', 'BolC9t58266H' => 'bol', 'BolSC21t60294H' => 'bol', 'BraA02t05670Z' => 'bra', 'BraA03t12716Z' => 'bra', 'BraA04t17685Z' => 'bra', 'BraA05t22788Z' => 'bra', 'BraA06t24032Z' => 'bra', 'BraA06t25625Z' => 'bra', 'BraA07t27930Z' => 'bra', 'BraA08t35242Z' => 'bra', 'BraA09t38609Z' => 'bra', 'BraA10t43905Z' => 'bra', 'C02p11060' => 'bna', 'C03p42990' => 'bna', 'C03p67310' => 'bna', 'C04p56990' => 'bna', 'C04p58660' => 'bna', 'C05p09890' => 'bna', 'C05p59680' => 'bna', 'C06p19830' => 'bna', 'C06p53040' => 'bna', 'C07p15230' => 'bna', 'C08p50070' => 'bna', 'C08p50090' => 'bna', 'C09p38330' => 'bna', 'C09p53940' => 'bna', 'CAN.G1014.1' => 'can', 'CAN.G644.30' => 'can', 'CAN.G84.47' => 'can', 'CAN.G919.8' => 'can', 'CANSAT54G0113' => 'cansat', 'CANSAT54G1286' => 'cansat', 'CANSAT64G1020' => 'cansat', 'CARHR008080' => 'chi', 'CARHR008090' => 'chi', 'CARHR012130' => 'chi', 'CARHR038390' => 'chi', 'CARHR082330' => 'chi', 'CARHR120520' => 'chi', 'CARHR151470' => 'chi', 'CARHR190950' => 'chi', 'Carub.0001s0760' => 'cru', 'Carub.0001s1146' => 'cru', 'Carub.0003s0721' => 'cru', 'Carub.0004s0858' => 'cru', 'Carub.0005s1040' => 'cru', 'Carub.0006s2035' => 'cru', 'Carub.0015s0005' => 'cru', 'Ca_01607_v3' => 'car', 'Ca_01677_v3' => 'car', 'Ca_06087_v3' => 'car', 'Ca_19238_v3' => 'car', 'Ca_19373_v3' => 'car', 'Ca_21079_v3' => 'car', 'CBR_g54016' => 'cbr', 'CBR_g54018' => 'cbr', 'CBR_g54020' => 'cbr', 'Cc01_g09780' => 'ccan', 'Cc01_g11680' => 'ccan', 'Cc02_g15610' => 'ccan', 'Cc05_g04350' => 'ccan', 'Cc09_g01580' => 'ccan', 'CDE01G0795' => 'cde', 'CDE02G2024' => 'cde', 'CDE02G2260' => 'cde', 'CDE02G4561' => 'cde', 'CDE05G2733' => 'cde', 'CDE05G3422' => 'cde', 'CDE06G2003' => 'cde', 'CDE08G0576' => 'cde', 'CDE09G0048' => 'cde', 'CDE11G0805' => 'cde', 'Cfa003644' => 'cfa', 'Cfa006290' => 'cfa', 'Cfa010080' => 'cfa', 'Cfa011376' => 'cfa', 'Cfa011576' => 'cfa', 'Cfa011577' => 'cfa', 'Cfa014389' => 'cfa', 'Ciclev10006044m.g' => 'ccl', 'Ciclev10006954m.g' => 'ccl', 'Ciclev10015131m.g' => 'ccl', 'Ciclev10015580m.g' => 'ccl', 'Ciclev10028359m.g' => 'ccl', 'Ciclev10028573m.g' => 'ccl', 'CiPaw.03G159300' => 'cil', 'CiPaw.04G115100' => 'cil', 'CiPaw.09G092800' => 'cil', 'CiPaw.10G071800' => 'cil', 'CiPaw.13G105800' => 'cil', 'CiPaw.13G141000' => 'cil', 'CiPaw.14G103400' => 'cil', 'ClCG01G012700' => 'cla', 'ClCG01G012720' => 'cla', 'ClCG01G021920' => 'cla', 'ClCG02G008870' => 'cla', 'ClCG02G020840' => 'cla', 'ClCG02G021930' => 'cla', 'COL.COLO4_19302' => 'col', 'COL.COLO4_25262' => 'col', 'COL.COLO4_31788' => 'col', 'Cpa.g.c34684' => 'cpa', 'Cpa.g.c36520.1' => 'cpa', 'Cpa.g.c45626' => 'cpa', 'Cpa.g.sc121.17' => 'cpa', 'Cpa.g.sc13.22' => 'cpa', 'Cpa.g.sc87.88' => 'cpa', 'Cre06.g261800' => 'cre', 'CsaV3_1G014500' => 'csa', 'CsaV3_1G014510' => 'csa', 'CsaV3_2G034880' => 'csa', 'CsaV3_6G014760' => 'csa', 'CsaV3_6G021500' => 'csa', 'CsaV3_6G048980' => 'csa', 'CSS0002511' => 'camsi', 'CSS0007556' => 'camsi', 'CSS0008532' => 'camsi', 'CSS0009709' => 'camsi', 'CSS0010486' => 'camsi', 'CSS0016768' => 'camsi', 'CSS0023512' => 'camsi', 'CSS0025341' => 'camsi', 'CSS0027999' => 'camsi', 'CSS0028944' => 'camsi', 'CSS0032292' => 'camsi', 'CSS0032464' => 'camsi', 'CSS0037153' => 'camsi', 'CSS0039256' => 'camsi', 'CSS0048392' => 'camsi', 'CSS0050458' => 'camsi', 'DCAR_004224' => 'dca', 'DCAR_006147' => 'dca', 'DCAR_006465' => 'dca', 'DCAR_008159' => 'dca', 'DCAR_012164' => 'dca', 'DCAR_019764' => 'dca', 'Dinv05418' => 'din', 'Dinv10839' => 'din', 'Dinv12521' => 'din', 'Dinv13900' => 'din', 'Dinv29426' => 'din', 'Duzib150G0263' => 'dzi', 'Duzib168G1178' => 'dzi', 'Duzib168G1924' => 'dzi', 'Duzib170G0299' => 'dzi', 'Duzib170G0813' => 'dzi', 'Duzib235G1128' => 'dzi', 'Duzib248G1060' => 'dzi', 'ECA232G1910' => 'eca', 'ECA233G4621' => 'eca', 'ECA238G1216' => 'eca', 'ECA238G1784' => 'eca', 'ECA248G1242' => 'eca', 'EL10Ac8g20071' => 'bvu', 'EL10Ac9g21086' => 'bvu', 'EL10Ac9g22407' => 'bvu', 'EL10Ac9g22412' => 'bvu', 'Eucgr.A01119' => 'egr', 'Eucgr.E04043' => 'egr', 'Eucgr.J00428' => 'egr', 'Eucgr.J00958' => 'egr', 'FAN11G3091' => 'fan', 'FAN11G3651' => 'fan', 'FAN16G2566' => 'fan', 'FAN21G3155' => 'fan', 'FAN21G3400' => 'fan', 'FAN21G3543' => 'fan', 'FAN25G0234' => 'fan', 'FAN25G1422' => 'fan', 'FAN25G3392' => 'fan', 'FvH4_3g01940' => 'fve', 'FvH4_3g29870' => 'fve', 'FvH4_3g33680' => 'fve', 'Glyma.09G004200' => 'gma', 'Glyma.11G151288' => 'gma', 'Glyma.11G189100' => 'gma', 'Glyma.12G072500' => 'gma', 'Glyma.12G085500' => 'gma', 'Glyma.12G181800' => 'gma', 'Glyma.12G193000' => 'gma', 'Glyma.13G309300' => 'gma', 'Glyma.13G319000' => 'gma', 'Glyma.17G012600' => 'gma', 'Gohir.A06G148600' => 'ghi', 'Gohir.A07G115800' => 'ghi', 'Gohir.A08G003600' => 'ghi', 'Gohir.A09G093300' => 'ghi', 'Gohir.A09G105400' => 'ghi', 'Gohir.A09G105500' => 'ghi', 'Gohir.D06G154600' => 'ghi', 'Gohir.D07G120200' => 'ghi', 'Gohir.D08G013900' => 'ghi', 'Gohir.D09G093100' => 'ghi', 'Gohir.D09G102200' => 'ghi', 'Gohir.D09G102300' => 'ghi', 'Gorai.001G129400' => 'gra', 'Gorai.004G008200' => 'gra', 'Gorai.006G109800' => 'gra', 'Gorai.006G119500' => 'gra', 'Gorai.006G121300' => 'gra', 'Gorai.010G180700' => 'gra', 'GSVIVG01012716001' => 'vvi', 'GSVIVG01025118001' => 'vvi', 'GSVIVG01030439001' => 'vvi', 'GSVIVG01031397001' => 'vvi', 'HanXRQChr01g0004201' => 'han', 'HanXRQChr02g0054941' => 'han', 'HanXRQChr05g0141811' => 'han', 'HanXRQChr07g0197751' => 'han', 'HanXRQChr11g0346691' => 'han', 'HanXRQChr13g0396971' => 'han', 'HanXRQChr14g0432951' => 'han', 'HanXRQChr14g0452001' => 'han', 'HanXRQChr15g0496681' => 'han', 'HanXRQChr17g0557491' => 'han', 'HanXRQChr17g0557501' => 'han', 'Haze_06809' => 'cav', 'Haze_12852' => 'cav', 'Haze_15850' => 'cav', 'Haze_23446' => 'cav', 'Haze_23942' => 'cav', 'Haze_23943' => 'cav', 'Hma1.2p1_0091F.1_g046450' => 'hma', 'Hma1.2p1_0128F.1_g059910' => 'hma', 'Hma1.2p1_0249F.1_g102260' => 'hma', 'Hma1.2p1_0453F.1_g156190' => 'hma', 'Hma1.2p1_0695F.1_g204380' => 'hma', 'Hma1.2p1_0749F.1_g212650' => 'hma', 'Hma1.2p1_2156F.1_g315420' => 'hma', 'Hma1.2p1_2686F.1_g326940' => 'hma', 'HPP92_006428' => 'vpl', 'HPP92_012069' => 'vpl', 'HPP92_014129' => 'vpl', 'HPP92_014133' => 'vpl', 'HPP92_017315' => 'vpl', 'HPP92_026445' => 'vpl', 'HPP92_026446' => 'vpl', 'Hund00774' => 'sun', 'Hund07682' => 'sun', 'Hund21413' => 'sun', 'Hund23462' => 'sun', 'Hund23463' => 'sun', 'Lalb_Chr03g0027911' => 'lal', 'Lalb_Chr13g0304271' => 'lal', 'Lalb_Chr19g0137471' => 'lal', 'Lalb_Chr22g0350651' => 'lal', 'Lalb_Chr24g0395151' => 'lal', 'Lj1A1231T40' => 'lonja', 'Lj1A221T48' => 'lonja', 'Lj1C924T12' => 'lonja', 'Lj2C993G6' => 'lonja', 'Lj3g0005790' => 'lja', 'Lj3g0015432' => 'lja', 'Lj3g0017722' => 'lja', 'Lj3g0018497' => 'lja', 'Lj4g0025071' => 'lja', 'Lsat_1_v5_gn_1_129680' => 'lsa', 'Lsat_1_v5_gn_2_25321' => 'lsa', 'Lsat_1_v5_gn_2_95461' => 'lsa', 'Lsat_1_v5_gn_4_159620' => 'lsa', 'Lsat_1_v5_gn_6_41301' => 'lsa', 'Lsat_1_v5_gn_6_74660' => 'lsa', 'Lsat_1_v5_gn_7_11520' => 'lsa', 'Lsat_1_v5_gn_9_67680' => 'lsa', 'Manes.04G008300' => 'mes', 'Manes.04G008400' => 'mes', 'Manes.04G026500' => 'mes', 'Manes.10G135300' => 'mes', 'Manes.11G157300' => 'mes', 'Manes.12G074000' => 'mes', 'Manes.16G006200' => 'mes', 'Manes.17G026400' => 'mes', 'Mapoly0024s0086' => 'mpo', 'Mapoly0024s0087' => 'mpo', 'Mapoly0071s0057' => 'mpo', 'Mapoly0204s0012' => 'mpo', 'MBI04_g37681_MAGBIO' => 'mbi', 'MBI05_g17779_MAGBIO' => 'mbi', 'MBI12_g31184_MAGBIO' => 'mbi', 'MBI17_g11083_MAGBIO' => 'mbi', 'MBI18_g03883_MAGBIO' => 'mbi', 'MBI18_g28940_MAGBIO' => 'mbi', 'MCO01G690' => 'mco', 'MD03G1109900' => 'mdo', 'MD03G1134800' => 'mdo', 'MD05G1348000' => 'mdo', 'MD10G1322400' => 'mdo', 'MD11G1123300' => 'mdo', 'MD11G1157600' => 'mdo', 'Medtr2g084875' => 'mtr', 'Medtr2g088130' => 'mtr', 'Medtr4g055310' => 'mtr', 'Medtr4g061070' => 'mtr', 'Medtr4g132250' => 'mtr', 'MELO3C004795.2' => 'cme', 'MELO3C004797.2' => 'cme', 'MELO3C007396.2' => 'cme', 'MELO3C019277.2' => 'cme', 'MELO3C021449.2' => 'cme', 'MELO3C025736.2' => 'cme', 'Migut.D02175' => 'egut', 'Migut.H01573' => 'egut', 'Migut.M01327' => 'egut', 'Migut.N02513' => 'egut', 'MSTRG.14638' => 'ama', 'MSTRG.18632' => 'ama', 'MSTRG.7203' => 'ama', 'Nitab4.5_0000533g0140' => 'nta', 'Nitab4.5_0000888g0150' => 'nta', 'Nitab4.5_0001453g0040' => 'nta', 'Nitab4.5_0002827g0090' => 'nta', 'Nitab4.5_0003082g0040' => 'nta', 'Nitab4.5_0007799g0040' => 'nta', 'Nitab4.5_0008983g0010' => 'nta', 'Nitab4.5_0009017g0020' => 'nta', 'Nn1g02132' => 'nnu', 'Nn1g03492' => 'nnu', 'Nn1g03493' => 'nnu', 'Nn1g03494' => 'nnu', 'Nn1g07164' => 'nnu', 'Nn1g07291' => 'nnu', 'Nn2g10655' => 'nnu', 'Nn2g11652' => 'nnu', 'Nn2g14008' => 'nnu', 'Nn3g17476' => 'nnu', 'Nn3g17477' => 'nnu', 'Nn4g22370' => 'nnu', 'Nn4g25255' => 'nnu', 'Nn5g27755' => 'nnu', 'Nn6g34260' => 'nnu', 'Nn6g35041' => 'nnu', 'Oeu005924.1' => 'oeu', 'Oeu008383.1' => 'oeu', 'Oeu014928.1' => 'oeu', 'Oeu019889.1' => 'oeu', 'Oeu022271.1' => 'oeu', 'Oeu025271.1' => 'oeu', 'Oeu036302.1' => 'oeu', 'Oeu044100.1' => 'oeu', 'Os01g0528300' => 'osa', 'Os03g0286200' => 'osa', 'Os04g0406600' => 'osa', 'Os07g0512000' => 'osa', 'Os07g0694600' => 'osa', 'Os08g0411000' => 'osa', 'Os09g0565700' => 'osa', 'Os09g0566050' => 'osa', 'Os10g0523700' => 'osa', 'Peaxi162Scf00002g00514' => 'pax', 'Peaxi162Scf00047g01817' => 'pax', 'Peaxi162Scf00114g00001' => 'pax', 'Peaxi162Scf00147g00613' => 'pax', 'Peaxi162Scf00389g00425' => 'pax', 'PGR042G1139' => 'pgr', 'PGR042G3273' => 'pgr', 'PGR102G2180' => 'pgr', 'PGR119G0234' => 'pgr', 'PGR119G0668' => 'pgr', 'PGSC0003DMG400007122' => 'stu', 'PGSC0003DMG400016478' => 'stu', 'PGSC0003DMG400025374' => 'stu', 'PGSC0003DMG400026536' => 'stu', 'Phvul.003G079600' => 'pvu', 'Phvul.005G115600' => 'pvu', 'Phvul.005G127100' => 'pvu', 'Phvul.006G149500' => 'pvu', 'Phvul.006G149600' => 'pvu', 'Phvul.011G071800' => 'pvu', 'Phvul.011G090400' => 'pvu', 'Potri.004G013400' => 'ptr', 'Potri.004G188100' => 'ptr', 'Potri.008G195500' => 'ptr', 'Potri.009G148800' => 'ptr', 'Potri.011G004700' => 'ptr', 'Pp3c17_22810' => 'ppa', 'Pp3c18_4480' => 'ppa', 'Pp3c19_13030' => 'ppa', 'Pp3c1_33620' => 'ppa', 'Pp3c2_9380' => 'ppa', 'PRCOL_00001023' => 'pco', 'Prupe.3G216300' => 'ppe', 'Prupe.4G019500' => 'ppe', 'Prupe.6G092500' => 'ppe', 'Prupe.6G119200' => 'ppe', 'Psat0s1945g0080' => 'psa', 'Psat0s4167g0040' => 'psa', 'Psat1g185800' => 'psa', 'Psat4g006440' => 'psa', 'Psat4g006480' => 'psa', 'Psat4g168120' => 'psa', 'Psat5g255680' => 'psa', 'Psat5g261760' => 'psa', 'Psat7g222120' => 'psa', 'PSO063G7252' => 'pso', 'PSO170G4778' => 'pso', 'PSO210G2249' => 'pso', 'PSO339G2411' => 'pso', 'PSO339G2457' => 'pso', 'PSO339G2854' => 'pso', 'PSO339G4288' => 'pso', 'PSO339G4615' => 'pso', 'PSO384G2796' => 'pso', 'PSO384G2940' => 'pso', 'PSO384G4227' => 'pso', 'PSO478G1425' => 'pso', 'PSO541G3863' => 'pso', 'PSO675G0507' => 'pso', 'PSO782G0338' => 'pso', 'PSO832G0644' => 'pso', 'QL01p013664' => 'qlo', 'QL01p036598' => 'qlo', 'QL05p072984' => 'qlo', 'QL08p005768' => 'qlo', 'QL08p032743' => 'qlo', 'QL93p0073_0439' => 'qlo', 'QL93p0073_0444' => 'qlo', 'RcHm_v2.0_Chr5g0002851' => 'rch', 'RcHm_v2.0_Chr5g0055201' => 'rch', 'RcHm_v2.0_Chr5g0061191' => 'rch', 'RcHm_v2.0_Chr7g0203231' => 'rch', 'Rhsim01G0208100' => 'rsi', 'Rhsim01G0208200' => 'rsi', 'Rhsim02G0106500' => 'rsi', 'Rhsim03G0107900' => 'rsi', 'Rhsim06G0163400' => 'rsi', 'Rhsim13G0105200' => 'rsi', 'Sabra04G0006300' => 'sbr', 'Sabra04G0127000' => 'sbr', 'Sabra08G0148700' => 'sbr', 'Sabra09G0117400' => 'sbr', 'SalBow1G3326' => 'sbo', 'SalBow3G3228' => 'sbo', 'SalBow6G1634' => 'sbo', 'SalBow6G3603' => 'sbo', 'SalBow6G5266' => 'sbo', 'SalBow7G2265' => 'sbo', 'SalBow8G0850' => 'sbo', 'SalBow8G2592' => 'sbo', 'Sc05g0009240' => 'sci', 'Sc12g0002300' => 'sci', 'Sc21g0000100' => 'sci', 'Sc21g0004720' => 'sci', 'Sed0002949' => 'sed', 'Sed0004114' => 'sed', 'Sed0004306' => 'sed', 'Sed0006172' => 'sed', 'Sed0008413' => 'sed', 'Sed0013809' => 'sed', 'Sed0019556' => 'sed', 'SEGI_03570' => 'sgi', 'SEGI_07859' => 'sgi', 'SEGI_15042' => 'sgi', 'SEGI_16263' => 'sgi', 'SEGI_16552' => 'sgi', 'SEGI_24331' => 'sgi', 'SEGI_27316' => 'sgi', 'SEGI_29521' => 'sgi', 'SEGI_41342' => 'sgi', 'SGA_v2.0_scaffold27G11617' => 'sas', 'SGA_v2.0_scaffold316G48428' => 'sas', 'SGA_v2.0_scaffold49G18261' => 'sas', 'SGA_v2.0_scaffold7G03831' => 'sas', 'SGA_v2.0_scaffold93G28359' => 'sas', 'SHI02210' => 'shi', 'SHI06028' => 'shi', 'SHI06321' => 'shi', 'SMO111G0012' => 'smo', 'SMO228G0080' => 'smo', 'SMO356G0756' => 'smo', 'Solyc02g080620.3' => 'sly', 'Solyc06g074530.1' => 'sly', 'Solyc11g066890.1' => 'sly', 'Solyc11g072520.3' => 'sly', 'Sopen02g025330' => 'spe', 'Sopen06g031000' => 'spe', 'Sopen09g008240' => 'spe', 'Sopen09g025210' => 'spe', 'Sopen11g026600' => 'spe', 'Sopen11g030170' => 'spe', 'Sp1g10420' => 'spa', 'Sp3g06570' => 'spa', 'Sp4g10660' => 'spa', 'Sp5g16460' => 'spa', 'Sp6g22710' => 'spa', 'TAR365G0112' => 'tar', 'TAR369G0717' => 'tar', 'TAR374G0976' => 'tar', 'TAR623G1128' => 'tar', 'TAR626G1937' => 'tar', 'TAR627G0123' => 'tar', 'TAR628G0305' => 'tar', 'TAR636G1176' => 'tar', 'TAR636G2442' => 'tar', 'THA.LOC104800556' => 'tha', 'THA.LOC104809501' => 'tha', 'THA.LOC104815126' => 'tha', 'THA.LOC104815732' => 'tha', 'THA.LOC104823528' => 'tha', 'Thecc.02G365600' => 'tca', 'Thecc.06G222300' => 'tca', 'Thecc.09G261800' => 'tca', 'Thecc.09G291400' => 'tca', 'Thhalv10003028m.g' => 'esa', 'Thhalv10007886m.g' => 'esa', 'Thhalv10016085m.g' => 'esa', 'Thhalv10016681m.g' => 'esa', 'Thhalv10020951m.g' => 'esa', 'TPR.G15598' => 'tpr', 'TPR.G29305' => 'tpr', 'TPR.G32395' => 'tpr', 'TPR.G36998' => 'tpr', 'TPR.G4227' => 'tpr', 'TWI18G1433' => 'twi', 'TWI31G0755' => 'twi', 'TWI38G0912' => 'twi', 'TWI75G1097' => 'twi', 'TWI75G1619' => 'twi', 'TWI79G1336' => 'twi', 'unitig_0.g943' => 'ugi', 'unitig_0.g944' => 'ugi', 'unitig_22.g6646' => 'ugi', 'unitig_37.g12681' => 'ugi', 'unitig_8.g3290' => 'ugi', 'vmacro03278' => 'vma', 'vmacro12197' => 'vma', 'vmacro14478' => 'vma', 'vmacro15787' => 'vma', 'vmacro15789' => 'vma', 'vmacro15790' => 'vma', 'vmacro15806' => 'vma', 'vmacro22907' => 'vma', 'vmacro22908' => 'vma', 'vmacro22909' => 'vma', 'vmacro23108' => 'vma', 'VMungo0540G0540' => 'vmu', 'VMungo0540G2468' => 'vmu', 'VMungo1080G0390' => 'vmu', 'VMungo1080G1165' => 'vmu', 'VMungo1127G0170' => 'vmu', 'VMungo1127G2099' => 'vmu', 'VMungo1215G3013' => 'vmu', 'Zm00001eb013110' => 'zma', 'Zm00001eb084260' => 'zma', 'Zm00001eb096110' => 'zma', 'Zm00001eb217510' => 'zma', 'Zm00001eb322550' => 'zma', 'Zm00001eb390770' => 'zma', 'Zm00001eb397170' => 'zma', 'Zm00001eb404610' => 'zma', 'Zm00001eb421790' => 'zma' ) $gf_id = 'HOM05D000911' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000911' ) $data_identifier = 'HOM05D000911' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 16, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 5, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 6, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 8, 'nnu' => (int) 16, 'oeu' => (int) 8, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 5, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 16, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421790' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000911', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27780' => 'bna', 'A03p35380' => 'bna', 'A04p21160' => 'bna', 'A05p40570' => 'bna', 'A06p26900' => 'bna', 'A08p33230' => 'bna', 'A09p65960' => 'bna', 'A10p18290' => 'bna', 'Aa31LG1G12990' => 'aar', 'Aa31LG1G2980' => 'aar', 'Aa31LG4G14320' => 'aar', 'Aa31LG7G11800' => 'aar', 'Aa31sc36G50' => 'aar', 'Aa31sc36G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3721' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5459' => 'aag', 'Actinidia03028' => 'ach', 'Actinidia03753' => 'ach', 'Actinidia04187' => 'ach', 'Actinidia05509' => 'ach', 'Actinidia24180' => 'ach', 'Actinidia26906' => 'ach', 'Actinidia37097' => 'ach', 'Actinidia38249' => 'ach', 'Ah.01g003470' => 'amhyb', 'Ah.01g004580' => 'amhyb', 'Ah.01g014850' => 'amhyb', 'Ah.01g016830' => 'amhyb', 'Ah.14g088000' => 'amhyb', 'AL1G22980' => 'aly', 'AL3G18990' => 'aly', 'AL4G22440' => 'aly', 'AL4G33180' => 'aly', 'AL5G22920' => 'aly', 'AL6G33660' => 'aly', 'AL8G20720' => 'aly', 'Aqoxy1G00935' => 'aox', 'Aqoxy1G02094' => 'aox', 'Aqoxy2G01239' => 'aox', 'Aqoxy4G01870' => 'aox', 'Aqoxy7G00450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.36ZVTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71EM27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5D6C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH3WRE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3NCM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RIM768' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YB5YRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z36GDV' => 'arhy', 'AT1G08250' => 'ath', 'AT1G11790' => 'ath', 'AT2G27820' => 'ath', 'AT3G07630' => 'ath', 'AT3G44720' => 'ath', 'AT5G22630' => 'ath', 'ATR0693G304' => 'atr', 'ATR0794G109' => 'atr', 'ATR0820G120' => 'atr', 'ATR1159G064' => 'atr', 'Atru.chr10.2239' => 'acertr', 'Atru.chr3.3371' => 'acertr', 'Atru.chr6.3202' => 'acertr', 'AUR62006499' => 'cqu', 'AUR62012718' => 'cqu', 'AUR62021938' => 'cqu', 'AUR62023932' => 'cqu', 'AUR62025034' => 'cqu', 'AUR62025035' => 'cqu', 'AUR62038307' => 'cqu', 'AUR62043466' => 'cqu', 'BcaB02g10748' => 'bca', 'BcaB03g13231' => 'bca', 'BcaB03g14689' => 'bca', 'BcaB05g22716' => 'bca', 'BcaB06g28172' => 'bca', 'BcaB08g36413' => 'bca', 'BcaC01g02186' => 'bca', 'BcaC01g04272' => 'bca', 'BcaC02g08080' => 'bca', 'BcaC02g08227' => 'bca', 'BcaC03g13901' => 'bca', 'BcaC04g19593' => 'bca', 'BcaC04g20874' => 'bca', 'BcaC05g29557' => 'bca', 'BcaC06g35505' => 'bca', 'BcaC07g41954' => 'bca', 'BcaC07g41955' => 'bca', 'BcaC07g41956' => 'bca', 'BcaC07g42519' => 'bca', 'BcaC07g42520' => 'bca', 'BcaC07g42523' => 'bca', 'BcaC07g42524' => 'bca', 'BcaC07g42525' => 'bca', 'BcaC08g47480' => 'bca', 'BcaC08g47481' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00530' => 'bna', 'BolC2t07178H' => 'bol', 'BolC3t16567H' => 'bol', 'BolC4t27234H' => 'bol', 'BolC5t29728H' => 'bol', 'BolC5t34622H' => 'bol', 'BolC6t40321H' => 'bol', 'BolC7t42028H' => 'bol', 'BolC8t49125H' => 'bol', 'BolC8t52538H' => 'bol', 'BolC8t52539H' => 'bol', 'BolC9t56681H' => 'bol', 'BolC9t58266H' => 'bol', 'BolSC21t60294H' => 'bol', 'BraA02t05670Z' => 'bra', 'BraA03t12716Z' => 'bra', 'BraA04t17685Z' => 'bra', 'BraA05t22788Z' => 'bra', 'BraA06t24032Z' => 'bra', 'BraA06t25625Z' => 'bra', 'BraA07t27930Z' => 'bra', 'BraA08t35242Z' => 'bra', 'BraA09t38609Z' => 'bra', 'BraA10t43905Z' => 'bra', 'C02p11060' => 'bna', 'C03p42990' => 'bna', 'C03p67310' => 'bna', 'C04p56990' => 'bna', 'C04p58660' => 'bna', 'C05p09890' => 'bna', 'C05p59680' => 'bna', 'C06p19830' => 'bna', 'C06p53040' => 'bna', 'C07p15230' => 'bna', 'C08p50070' => 'bna', 'C08p50090' => 'bna', 'C09p38330' => 'bna', 'C09p53940' => 'bna', 'CAN.G1014.1' => 'can', 'CAN.G644.30' => 'can', 'CAN.G84.47' => 'can', 'CAN.G919.8' => 'can', 'CANSAT54G0113' => 'cansat', 'CANSAT54G1286' => 'cansat', 'CANSAT64G1020' => 'cansat', 'CARHR008080' => 'chi', 'CARHR008090' => 'chi', 'CARHR012130' => 'chi', 'CARHR038390' => 'chi', 'CARHR082330' => 'chi', 'CARHR120520' => 'chi', 'CARHR151470' => 'chi', 'CARHR190950' => 'chi', 'Carub.0001s0760' => 'cru', 'Carub.0001s1146' => 'cru', 'Carub.0003s0721' => 'cru', 'Carub.0004s0858' => 'cru', 'Carub.0005s1040' => 'cru', 'Carub.0006s2035' => 'cru', 'Carub.0015s0005' => 'cru', 'Ca_01607_v3' => 'car', 'Ca_01677_v3' => 'car', 'Ca_06087_v3' => 'car', 'Ca_19238_v3' => 'car', 'Ca_19373_v3' => 'car', 'Ca_21079_v3' => 'car', 'CBR_g54016' => 'cbr', 'CBR_g54018' => 'cbr', 'CBR_g54020' => 'cbr', 'Cc01_g09780' => 'ccan', 'Cc01_g11680' => 'ccan', 'Cc02_g15610' => 'ccan', 'Cc05_g04350' => 'ccan', 'Cc09_g01580' => 'ccan', 'CDE01G0795' => 'cde', 'CDE02G2024' => 'cde', 'CDE02G2260' => 'cde', 'CDE02G4561' => 'cde', 'CDE05G2733' => 'cde', 'CDE05G3422' => 'cde', 'CDE06G2003' => 'cde', 'CDE08G0576' => 'cde', 'CDE09G0048' => 'cde', 'CDE11G0805' => 'cde', 'Cfa003644' => 'cfa', 'Cfa006290' => 'cfa', 'Cfa010080' => 'cfa', 'Cfa011376' => 'cfa', 'Cfa011576' => 'cfa', 'Cfa011577' => 'cfa', 'Cfa014389' => 'cfa', 'Ciclev10006044m.g' => 'ccl', 'Ciclev10006954m.g' => 'ccl', 'Ciclev10015131m.g' => 'ccl', 'Ciclev10015580m.g' => 'ccl', 'Ciclev10028359m.g' => 'ccl', 'Ciclev10028573m.g' => 'ccl', 'CiPaw.03G159300' => 'cil', 'CiPaw.04G115100' => 'cil', 'CiPaw.09G092800' => 'cil', 'CiPaw.10G071800' => 'cil', 'CiPaw.13G105800' => 'cil', 'CiPaw.13G141000' => 'cil', 'CiPaw.14G103400' => 'cil', 'ClCG01G012700' => 'cla', 'ClCG01G012720' => 'cla', 'ClCG01G021920' => 'cla', 'ClCG02G008870' => 'cla', 'ClCG02G020840' => 'cla', 'ClCG02G021930' => 'cla', 'COL.COLO4_19302' => 'col', 'COL.COLO4_25262' => 'col', 'COL.COLO4_31788' => 'col', 'Cpa.g.c34684' => 'cpa', 'Cpa.g.c36520.1' => 'cpa', 'Cpa.g.c45626' => 'cpa', 'Cpa.g.sc121.17' => 'cpa', 'Cpa.g.sc13.22' => 'cpa', 'Cpa.g.sc87.88' => 'cpa', 'Cre06.g261800' => 'cre', 'CsaV3_1G014500' => 'csa', 'CsaV3_1G014510' => 'csa', 'CsaV3_2G034880' => 'csa', 'CsaV3_6G014760' => 'csa', 'CsaV3_6G021500' => 'csa', 'CsaV3_6G048980' => 'csa', 'CSS0002511' => 'camsi', 'CSS0007556' => 'camsi', 'CSS0008532' => 'camsi', 'CSS0009709' => 'camsi', 'CSS0010486' => 'camsi', 'CSS0016768' => 'camsi', 'CSS0023512' => 'camsi', 'CSS0025341' => 'camsi', 'CSS0027999' => 'camsi', 'CSS0028944' => 'camsi', 'CSS0032292' => 'camsi', 'CSS0032464' => 'camsi', 'CSS0037153' => 'camsi', 'CSS0039256' => 'camsi', 'CSS0048392' => 'camsi', 'CSS0050458' => 'camsi', 'DCAR_004224' => 'dca', 'DCAR_006147' => 'dca', 'DCAR_006465' => 'dca', 'DCAR_008159' => 'dca', 'DCAR_012164' => 'dca', 'DCAR_019764' => 'dca', 'Dinv05418' => 'din', 'Dinv10839' => 'din', 'Dinv12521' => 'din', 'Dinv13900' => 'din', 'Dinv29426' => 'din', 'Duzib150G0263' => 'dzi', 'Duzib168G1178' => 'dzi', 'Duzib168G1924' => 'dzi', 'Duzib170G0299' => 'dzi', 'Duzib170G0813' => 'dzi', 'Duzib235G1128' => 'dzi', 'Duzib248G1060' => 'dzi', 'ECA232G1910' => 'eca', 'ECA233G4621' => 'eca', 'ECA238G1216' => 'eca', 'ECA238G1784' => 'eca', 'ECA248G1242' => 'eca', 'EL10Ac8g20071' => 'bvu', 'EL10Ac9g21086' => 'bvu', 'EL10Ac9g22407' => 'bvu', 'EL10Ac9g22412' => 'bvu', 'Eucgr.A01119' => 'egr', 'Eucgr.E04043' => 'egr', 'Eucgr.J00428' => 'egr', 'Eucgr.J00958' => 'egr', 'FAN11G3091' => 'fan', 'FAN11G3651' => 'fan', 'FAN16G2566' => 'fan', 'FAN21G3155' => 'fan', 'FAN21G3400' => 'fan', 'FAN21G3543' => 'fan', 'FAN25G0234' => 'fan', 'FAN25G1422' => 'fan', 'FAN25G3392' => 'fan', 'FvH4_3g01940' => 'fve', 'FvH4_3g29870' => 'fve', 'FvH4_3g33680' => 'fve', 'Glyma.09G004200' => 'gma', 'Glyma.11G151288' => 'gma', 'Glyma.11G189100' => 'gma', 'Glyma.12G072500' => 'gma', 'Glyma.12G085500' => 'gma', 'Glyma.12G181800' => 'gma', 'Glyma.12G193000' => 'gma', 'Glyma.13G309300' => 'gma', 'Glyma.13G319000' => 'gma', 'Glyma.17G012600' => 'gma', 'Gohir.A06G148600' => 'ghi', 'Gohir.A07G115800' => 'ghi', 'Gohir.A08G003600' => 'ghi', 'Gohir.A09G093300' => 'ghi', 'Gohir.A09G105400' => 'ghi', 'Gohir.A09G105500' => 'ghi', 'Gohir.D06G154600' => 'ghi', 'Gohir.D07G120200' => 'ghi', 'Gohir.D08G013900' => 'ghi', 'Gohir.D09G093100' => 'ghi', 'Gohir.D09G102200' => 'ghi', 'Gohir.D09G102300' => 'ghi', 'Gorai.001G129400' => 'gra', 'Gorai.004G008200' => 'gra', 'Gorai.006G109800' => 'gra', 'Gorai.006G119500' => 'gra', 'Gorai.006G121300' => 'gra', 'Gorai.010G180700' => 'gra', 'GSVIVG01012716001' => 'vvi', 'GSVIVG01025118001' => 'vvi', 'GSVIVG01030439001' => 'vvi', 'GSVIVG01031397001' => 'vvi', 'HanXRQChr01g0004201' => 'han', 'HanXRQChr02g0054941' => 'han', 'HanXRQChr05g0141811' => 'han', 'HanXRQChr07g0197751' => 'han', 'HanXRQChr11g0346691' => 'han', 'HanXRQChr13g0396971' => 'han', 'HanXRQChr14g0432951' => 'han', 'HanXRQChr14g0452001' => 'han', 'HanXRQChr15g0496681' => 'han', 'HanXRQChr17g0557491' => 'han', 'HanXRQChr17g0557501' => 'han', 'Haze_06809' => 'cav', 'Haze_12852' => 'cav', 'Haze_15850' => 'cav', 'Haze_23446' => 'cav', 'Haze_23942' => 'cav', 'Haze_23943' => 'cav', 'Hma1.2p1_0091F.1_g046450' => 'hma', 'Hma1.2p1_0128F.1_g059910' => 'hma', 'Hma1.2p1_0249F.1_g102260' => 'hma', 'Hma1.2p1_0453F.1_g156190' => 'hma', 'Hma1.2p1_0695F.1_g204380' => 'hma', 'Hma1.2p1_0749F.1_g212650' => 'hma', 'Hma1.2p1_2156F.1_g315420' => 'hma', 'Hma1.2p1_2686F.1_g326940' => 'hma', 'HPP92_006428' => 'vpl', 'HPP92_012069' => 'vpl', 'HPP92_014129' => 'vpl', 'HPP92_014133' => 'vpl', 'HPP92_017315' => 'vpl', 'HPP92_026445' => 'vpl', 'HPP92_026446' => 'vpl', 'Hund00774' => 'sun', 'Hund07682' => 'sun', 'Hund21413' => 'sun', 'Hund23462' => 'sun', 'Hund23463' => 'sun', 'Lalb_Chr03g0027911' => 'lal', 'Lalb_Chr13g0304271' => 'lal', 'Lalb_Chr19g0137471' => 'lal', 'Lalb_Chr22g0350651' => 'lal', 'Lalb_Chr24g0395151' => 'lal', 'Lj1A1231T40' => 'lonja', 'Lj1A221T48' => 'lonja', 'Lj1C924T12' => 'lonja', 'Lj2C993G6' => 'lonja', 'Lj3g0005790' => 'lja', 'Lj3g0015432' => 'lja', 'Lj3g0017722' => 'lja', 'Lj3g0018497' => 'lja', 'Lj4g0025071' => 'lja', 'Lsat_1_v5_gn_1_129680' => 'lsa', 'Lsat_1_v5_gn_2_25321' => 'lsa', 'Lsat_1_v5_gn_2_95461' => 'lsa', 'Lsat_1_v5_gn_4_159620' => 'lsa', 'Lsat_1_v5_gn_6_41301' => 'lsa', 'Lsat_1_v5_gn_6_74660' => 'lsa', 'Lsat_1_v5_gn_7_11520' => 'lsa', 'Lsat_1_v5_gn_9_67680' => 'lsa', 'Manes.04G008300' => 'mes', 'Manes.04G008400' => 'mes', 'Manes.04G026500' => 'mes', 'Manes.10G135300' => 'mes', 'Manes.11G157300' => 'mes', 'Manes.12G074000' => 'mes', 'Manes.16G006200' => 'mes', 'Manes.17G026400' => 'mes', 'Mapoly0024s0086' => 'mpo', 'Mapoly0024s0087' => 'mpo', 'Mapoly0071s0057' => 'mpo', 'Mapoly0204s0012' => 'mpo', 'MBI04_g37681_MAGBIO' => 'mbi', 'MBI05_g17779_MAGBIO' => 'mbi', 'MBI12_g31184_MAGBIO' => 'mbi', 'MBI17_g11083_MAGBIO' => 'mbi', 'MBI18_g03883_MAGBIO' => 'mbi', 'MBI18_g28940_MAGBIO' => 'mbi', 'MCO01G690' => 'mco', 'MD03G1109900' => 'mdo', 'MD03G1134800' => 'mdo', 'MD05G1348000' => 'mdo', 'MD10G1322400' => 'mdo', 'MD11G1123300' => 'mdo', 'MD11G1157600' => 'mdo', 'Medtr2g084875' => 'mtr', 'Medtr2g088130' => 'mtr', 'Medtr4g055310' => 'mtr', 'Medtr4g061070' => 'mtr', 'Medtr4g132250' => 'mtr', 'MELO3C004795.2' => 'cme', 'MELO3C004797.2' => 'cme', 'MELO3C007396.2' => 'cme', 'MELO3C019277.2' => 'cme', 'MELO3C021449.2' => 'cme', 'MELO3C025736.2' => 'cme', 'Migut.D02175' => 'egut', 'Migut.H01573' => 'egut', 'Migut.M01327' => 'egut', 'Migut.N02513' => 'egut', 'MSTRG.14638' => 'ama', 'MSTRG.18632' => 'ama', 'MSTRG.7203' => 'ama', 'Nitab4.5_0000533g0140' => 'nta', 'Nitab4.5_0000888g0150' => 'nta', 'Nitab4.5_0001453g0040' => 'nta', 'Nitab4.5_0002827g0090' => 'nta', 'Nitab4.5_0003082g0040' => 'nta', 'Nitab4.5_0007799g0040' => 'nta', 'Nitab4.5_0008983g0010' => 'nta', 'Nitab4.5_0009017g0020' => 'nta', 'Nn1g02132' => 'nnu', 'Nn1g03492' => 'nnu', 'Nn1g03493' => 'nnu', 'Nn1g03494' => 'nnu', 'Nn1g07164' => 'nnu', 'Nn1g07291' => 'nnu', 'Nn2g10655' => 'nnu', 'Nn2g11652' => 'nnu', 'Nn2g14008' => 'nnu', 'Nn3g17476' => 'nnu', 'Nn3g17477' => 'nnu', 'Nn4g22370' => 'nnu', 'Nn4g25255' => 'nnu', 'Nn5g27755' => 'nnu', 'Nn6g34260' => 'nnu', 'Nn6g35041' => 'nnu', 'Oeu005924.1' => 'oeu', 'Oeu008383.1' => 'oeu', 'Oeu014928.1' => 'oeu', 'Oeu019889.1' => 'oeu', 'Oeu022271.1' => 'oeu', 'Oeu025271.1' => 'oeu', 'Oeu036302.1' => 'oeu', 'Oeu044100.1' => 'oeu', 'Os01g0528300' => 'osa', 'Os03g0286200' => 'osa', 'Os04g0406600' => 'osa', 'Os07g0512000' => 'osa', 'Os07g0694600' => 'osa', 'Os08g0411000' => 'osa', 'Os09g0565700' => 'osa', 'Os09g0566050' => 'osa', 'Os10g0523700' => 'osa', 'Peaxi162Scf00002g00514' => 'pax', 'Peaxi162Scf00047g01817' => 'pax', 'Peaxi162Scf00114g00001' => 'pax', 'Peaxi162Scf00147g00613' => 'pax', 'Peaxi162Scf00389g00425' => 'pax', 'PGR042G1139' => 'pgr', 'PGR042G3273' => 'pgr', 'PGR102G2180' => 'pgr', 'PGR119G0234' => 'pgr', 'PGR119G0668' => 'pgr', 'PGSC0003DMG400007122' => 'stu', 'PGSC0003DMG400016478' => 'stu', 'PGSC0003DMG400025374' => 'stu', 'PGSC0003DMG400026536' => 'stu', 'Phvul.003G079600' => 'pvu', 'Phvul.005G115600' => 'pvu', 'Phvul.005G127100' => 'pvu', 'Phvul.006G149500' => 'pvu', 'Phvul.006G149600' => 'pvu', 'Phvul.011G071800' => 'pvu', 'Phvul.011G090400' => 'pvu', 'Potri.004G013400' => 'ptr', 'Potri.004G188100' => 'ptr', 'Potri.008G195500' => 'ptr', 'Potri.009G148800' => 'ptr', 'Potri.011G004700' => 'ptr', 'Pp3c17_22810' => 'ppa', 'Pp3c18_4480' => 'ppa', 'Pp3c19_13030' => 'ppa', 'Pp3c1_33620' => 'ppa', 'Pp3c2_9380' => 'ppa', 'PRCOL_00001023' => 'pco', 'Prupe.3G216300' => 'ppe', 'Prupe.4G019500' => 'ppe', 'Prupe.6G092500' => 'ppe', 'Prupe.6G119200' => 'ppe', 'Psat0s1945g0080' => 'psa', 'Psat0s4167g0040' => 'psa', 'Psat1g185800' => 'psa', 'Psat4g006440' => 'psa', 'Psat4g006480' => 'psa', 'Psat4g168120' => 'psa', 'Psat5g255680' => 'psa', 'Psat5g261760' => 'psa', 'Psat7g222120' => 'psa', 'PSO063G7252' => 'pso', 'PSO170G4778' => 'pso', 'PSO210G2249' => 'pso', 'PSO339G2411' => 'pso', 'PSO339G2457' => 'pso', 'PSO339G2854' => 'pso', 'PSO339G4288' => 'pso', 'PSO339G4615' => 'pso', 'PSO384G2796' => 'pso', 'PSO384G2940' => 'pso', 'PSO384G4227' => 'pso', 'PSO478G1425' => 'pso', 'PSO541G3863' => 'pso', 'PSO675G0507' => 'pso', 'PSO782G0338' => 'pso', 'PSO832G0644' => 'pso', 'QL01p013664' => 'qlo', 'QL01p036598' => 'qlo', 'QL05p072984' => 'qlo', 'QL08p005768' => 'qlo', 'QL08p032743' => 'qlo', 'QL93p0073_0439' => 'qlo', 'QL93p0073_0444' => 'qlo', 'RcHm_v2.0_Chr5g0002851' => 'rch', 'RcHm_v2.0_Chr5g0055201' => 'rch', 'RcHm_v2.0_Chr5g0061191' => 'rch', 'RcHm_v2.0_Chr7g0203231' => 'rch', 'Rhsim01G0208100' => 'rsi', 'Rhsim01G0208200' => 'rsi', 'Rhsim02G0106500' => 'rsi', 'Rhsim03G0107900' => 'rsi', 'Rhsim06G0163400' => 'rsi', 'Rhsim13G0105200' => 'rsi', 'Sabra04G0006300' => 'sbr', 'Sabra04G0127000' => 'sbr', 'Sabra08G0148700' => 'sbr', 'Sabra09G0117400' => 'sbr', 'SalBow1G3326' => 'sbo', 'SalBow3G3228' => 'sbo', 'SalBow6G1634' => 'sbo', 'SalBow6G3603' => 'sbo', 'SalBow6G5266' => 'sbo', 'SalBow7G2265' => 'sbo', 'SalBow8G0850' => 'sbo', 'SalBow8G2592' => 'sbo', 'Sc05g0009240' => 'sci', 'Sc12g0002300' => 'sci', 'Sc21g0000100' => 'sci', 'Sc21g0004720' => 'sci', 'Sed0002949' => 'sed', 'Sed0004114' => 'sed', 'Sed0004306' => 'sed', 'Sed0006172' => 'sed', 'Sed0008413' => 'sed', 'Sed0013809' => 'sed', 'Sed0019556' => 'sed', 'SEGI_03570' => 'sgi', 'SEGI_07859' => 'sgi', 'SEGI_15042' => 'sgi', 'SEGI_16263' => 'sgi', 'SEGI_16552' => 'sgi', 'SEGI_24331' => 'sgi', 'SEGI_27316' => 'sgi', 'SEGI_29521' => 'sgi', 'SEGI_41342' => 'sgi', 'SGA_v2.0_scaffold27G11617' => 'sas', 'SGA_v2.0_scaffold316G48428' => 'sas', 'SGA_v2.0_scaffold49G18261' => 'sas', 'SGA_v2.0_scaffold7G03831' => 'sas', 'SGA_v2.0_scaffold93G28359' => 'sas', 'SHI02210' => 'shi', 'SHI06028' => 'shi', 'SHI06321' => 'shi', 'SMO111G0012' => 'smo', 'SMO228G0080' => 'smo', 'SMO356G0756' => 'smo', 'Solyc02g080620.3' => 'sly', 'Solyc06g074530.1' => 'sly', 'Solyc11g066890.1' => 'sly', 'Solyc11g072520.3' => 'sly', 'Sopen02g025330' => 'spe', 'Sopen06g031000' => 'spe', 'Sopen09g008240' => 'spe', 'Sopen09g025210' => 'spe', 'Sopen11g026600' => 'spe', 'Sopen11g030170' => 'spe', 'Sp1g10420' => 'spa', 'Sp3g06570' => 'spa', 'Sp4g10660' => 'spa', 'Sp5g16460' => 'spa', 'Sp6g22710' => 'spa', 'TAR365G0112' => 'tar', 'TAR369G0717' => 'tar', 'TAR374G0976' => 'tar', 'TAR623G1128' => 'tar', 'TAR626G1937' => 'tar', 'TAR627G0123' => 'tar', 'TAR628G0305' => 'tar', 'TAR636G1176' => 'tar', 'TAR636G2442' => 'tar', 'THA.LOC104800556' => 'tha', 'THA.LOC104809501' => 'tha', 'THA.LOC104815126' => 'tha', 'THA.LOC104815732' => 'tha', 'THA.LOC104823528' => 'tha', 'Thecc.02G365600' => 'tca', 'Thecc.06G222300' => 'tca', 'Thecc.09G261800' => 'tca', 'Thecc.09G291400' => 'tca', 'Thhalv10003028m.g' => 'esa', 'Thhalv10007886m.g' => 'esa', 'Thhalv10016085m.g' => 'esa', 'Thhalv10016681m.g' => 'esa', 'Thhalv10020951m.g' => 'esa', 'TPR.G15598' => 'tpr', 'TPR.G29305' => 'tpr', 'TPR.G32395' => 'tpr', 'TPR.G36998' => 'tpr', 'TPR.G4227' => 'tpr', 'TWI18G1433' => 'twi', 'TWI31G0755' => 'twi', 'TWI38G0912' => 'twi', 'TWI75G1097' => 'twi', 'TWI75G1619' => 'twi', 'TWI79G1336' => 'twi', 'unitig_0.g943' => 'ugi', 'unitig_0.g944' => 'ugi', 'unitig_22.g6646' => 'ugi', 'unitig_37.g12681' => 'ugi', 'unitig_8.g3290' => 'ugi', 'vmacro03278' => 'vma', 'vmacro12197' => 'vma', 'vmacro14478' => 'vma', 'vmacro15787' => 'vma', 'vmacro15789' => 'vma', 'vmacro15790' => 'vma', 'vmacro15806' => 'vma', 'vmacro22907' => 'vma', 'vmacro22908' => 'vma', 'vmacro22909' => 'vma', 'vmacro23108' => 'vma', 'VMungo0540G0540' => 'vmu', 'VMungo0540G2468' => 'vmu', 'VMungo1080G0390' => 'vmu', 'VMungo1080G1165' => 'vmu', 'VMungo1127G0170' => 'vmu', 'VMungo1127G2099' => 'vmu', 'VMungo1215G3013' => 'vmu', 'Zm00001eb013110' => 'zma', 'Zm00001eb084260' => 'zma', 'Zm00001eb096110' => 'zma', 'Zm00001eb217510' => 'zma', 'Zm00001eb322550' => 'zma', 'Zm00001eb390770' => 'zma', 'Zm00001eb397170' => 'zma', 'Zm00001eb404610' => 'zma', 'Zm00001eb421790' => 'zma' ), 'gf_id' => 'HOM05D000911', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000911' ), 'data_identifier' => 'HOM05D000911', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000911', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27780' => 'bna', 'A03p35380' => 'bna', 'A04p21160' => 'bna', 'A05p40570' => 'bna', 'A06p26900' => 'bna', 'A08p33230' => 'bna', 'A09p65960' => 'bna', 'A10p18290' => 'bna', 'Aa31LG1G12990' => 'aar', 'Aa31LG1G2980' => 'aar', 'Aa31LG4G14320' => 'aar', 'Aa31LG7G11800' => 'aar', 'Aa31sc36G50' => 'aar', 'Aa31sc36G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3721' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5459' => 'aag', 'Actinidia03028' => 'ach', 'Actinidia03753' => 'ach', 'Actinidia04187' => 'ach', 'Actinidia05509' => 'ach', 'Actinidia24180' => 'ach', 'Actinidia26906' => 'ach', 'Actinidia37097' => 'ach', 'Actinidia38249' => 'ach', 'Ah.01g003470' => 'amhyb', 'Ah.01g004580' => 'amhyb', 'Ah.01g014850' => 'amhyb', 'Ah.01g016830' => 'amhyb', 'Ah.14g088000' => 'amhyb', 'AL1G22980' => 'aly', 'AL3G18990' => 'aly', 'AL4G22440' => 'aly', 'AL4G33180' => 'aly', 'AL5G22920' => 'aly', 'AL6G33660' => 'aly', 'AL8G20720' => 'aly', 'Aqoxy1G00935' => 'aox', 'Aqoxy1G02094' => 'aox', 'Aqoxy2G01239' => 'aox', 'Aqoxy4G01870' => 'aox', 'Aqoxy7G00450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.36ZVTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71EM27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5D6C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH3WRE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3NCM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RIM768' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YB5YRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z36GDV' => 'arhy', 'AT1G08250' => 'ath', 'AT1G11790' => 'ath', 'AT2G27820' => 'ath', 'AT3G07630' => 'ath', 'AT3G44720' => 'ath', 'AT5G22630' => 'ath', 'ATR0693G304' => 'atr', 'ATR0794G109' => 'atr', 'ATR0820G120' => 'atr', 'ATR1159G064' => 'atr', 'Atru.chr10.2239' => 'acertr', 'Atru.chr3.3371' => 'acertr', 'Atru.chr6.3202' => 'acertr', 'AUR62006499' => 'cqu', 'AUR62012718' => 'cqu', 'AUR62021938' => 'cqu', 'AUR62023932' => 'cqu', 'AUR62025034' => 'cqu', 'AUR62025035' => 'cqu', 'AUR62038307' => 'cqu', 'AUR62043466' => 'cqu', 'BcaB02g10748' => 'bca', 'BcaB03g13231' => 'bca', 'BcaB03g14689' => 'bca', 'BcaB05g22716' => 'bca', 'BcaB06g28172' => 'bca', 'BcaB08g36413' => 'bca', 'BcaC01g02186' => 'bca', 'BcaC01g04272' => 'bca', 'BcaC02g08080' => 'bca', 'BcaC02g08227' => 'bca', 'BcaC03g13901' => 'bca', 'BcaC04g19593' => 'bca', 'BcaC04g20874' => 'bca', 'BcaC05g29557' => 'bca', 'BcaC06g35505' => 'bca', 'BcaC07g41954' => 'bca', 'BcaC07g41955' => 'bca', 'BcaC07g41956' => 'bca', 'BcaC07g42519' => 'bca', 'BcaC07g42520' => 'bca', 'BcaC07g42523' => 'bca', 'BcaC07g42524' => 'bca', 'BcaC07g42525' => 'bca', 'BcaC08g47480' => 'bca', 'BcaC08g47481' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00530' => 'bna', 'BolC2t07178H' => 'bol', 'BolC3t16567H' => 'bol', 'BolC4t27234H' => 'bol', 'BolC5t29728H' => 'bol', 'BolC5t34622H' => 'bol', 'BolC6t40321H' => 'bol', 'BolC7t42028H' => 'bol', 'BolC8t49125H' => 'bol', 'BolC8t52538H' => 'bol', 'BolC8t52539H' => 'bol', 'BolC9t56681H' => 'bol', 'BolC9t58266H' => 'bol', 'BolSC21t60294H' => 'bol', 'BraA02t05670Z' => 'bra', 'BraA03t12716Z' => 'bra', 'BraA04t17685Z' => 'bra', 'BraA05t22788Z' => 'bra', 'BraA06t24032Z' => 'bra', 'BraA06t25625Z' => 'bra', 'BraA07t27930Z' => 'bra', 'BraA08t35242Z' => 'bra', 'BraA09t38609Z' => 'bra', 'BraA10t43905Z' => 'bra', 'C02p11060' => 'bna', 'C03p42990' => 'bna', 'C03p67310' => 'bna', 'C04p56990' => 'bna', 'C04p58660' => 'bna', 'C05p09890' => 'bna', 'C05p59680' => 'bna', 'C06p19830' => 'bna', 'C06p53040' => 'bna', 'C07p15230' => 'bna', 'C08p50070' => 'bna', 'C08p50090' => 'bna', 'C09p38330' => 'bna', 'C09p53940' => 'bna', 'CAN.G1014.1' => 'can', 'CAN.G644.30' => 'can', 'CAN.G84.47' => 'can', 'CAN.G919.8' => 'can', 'CANSAT54G0113' => 'cansat', 'CANSAT54G1286' => 'cansat', 'CANSAT64G1020' => 'cansat', 'CARHR008080' => 'chi', 'CARHR008090' => 'chi', 'CARHR012130' => 'chi', 'CARHR038390' => 'chi', 'CARHR082330' => 'chi', 'CARHR120520' => 'chi', 'CARHR151470' => 'chi', 'CARHR190950' => 'chi', 'Carub.0001s0760' => 'cru', 'Carub.0001s1146' => 'cru', 'Carub.0003s0721' => 'cru', 'Carub.0004s0858' => 'cru', 'Carub.0005s1040' => 'cru', 'Carub.0006s2035' => 'cru', 'Carub.0015s0005' => 'cru', 'Ca_01607_v3' => 'car', 'Ca_01677_v3' => 'car', 'Ca_06087_v3' => 'car', 'Ca_19238_v3' => 'car', 'Ca_19373_v3' => 'car', 'Ca_21079_v3' => 'car', 'CBR_g54016' => 'cbr', 'CBR_g54018' => 'cbr', 'CBR_g54020' => 'cbr', 'Cc01_g09780' => 'ccan', 'Cc01_g11680' => 'ccan', 'Cc02_g15610' => 'ccan', 'Cc05_g04350' => 'ccan', 'Cc09_g01580' => 'ccan', 'CDE01G0795' => 'cde', 'CDE02G2024' => 'cde', 'CDE02G2260' => 'cde', 'CDE02G4561' => 'cde', 'CDE05G2733' => 'cde', 'CDE05G3422' => 'cde', 'CDE06G2003' => 'cde', 'CDE08G0576' => 'cde', 'CDE09G0048' => 'cde', 'CDE11G0805' => 'cde', 'Cfa003644' => 'cfa', 'Cfa006290' => 'cfa', 'Cfa010080' => 'cfa', 'Cfa011376' => 'cfa', 'Cfa011576' => 'cfa', 'Cfa011577' => 'cfa', 'Cfa014389' => 'cfa', 'Ciclev10006044m.g' => 'ccl', 'Ciclev10006954m.g' => 'ccl', 'Ciclev10015131m.g' => 'ccl', 'Ciclev10015580m.g' => 'ccl', 'Ciclev10028359m.g' => 'ccl', 'Ciclev10028573m.g' => 'ccl', 'CiPaw.03G159300' => 'cil', 'CiPaw.04G115100' => 'cil', 'CiPaw.09G092800' => 'cil', 'CiPaw.10G071800' => 'cil', 'CiPaw.13G105800' => 'cil', 'CiPaw.13G141000' => 'cil', 'CiPaw.14G103400' => 'cil', 'ClCG01G012700' => 'cla', 'ClCG01G012720' => 'cla', 'ClCG01G021920' => 'cla', 'ClCG02G008870' => 'cla', 'ClCG02G020840' => 'cla', 'ClCG02G021930' => 'cla', 'COL.COLO4_19302' => 'col', 'COL.COLO4_25262' => 'col', 'COL.COLO4_31788' => 'col', 'Cpa.g.c34684' => 'cpa', 'Cpa.g.c36520.1' => 'cpa', 'Cpa.g.c45626' => 'cpa', 'Cpa.g.sc121.17' => 'cpa', 'Cpa.g.sc13.22' => 'cpa', 'Cpa.g.sc87.88' => 'cpa', 'Cre06.g261800' => 'cre', 'CsaV3_1G014500' => 'csa', 'CsaV3_1G014510' => 'csa', 'CsaV3_2G034880' => 'csa', 'CsaV3_6G014760' => 'csa', 'CsaV3_6G021500' => 'csa', 'CsaV3_6G048980' => 'csa', 'CSS0002511' => 'camsi', 'CSS0007556' => 'camsi', 'CSS0008532' => 'camsi', 'CSS0009709' => 'camsi', 'CSS0010486' => 'camsi', 'CSS0016768' => 'camsi', 'CSS0023512' => 'camsi', 'CSS0025341' => 'camsi', 'CSS0027999' => 'camsi', 'CSS0028944' => 'camsi', 'CSS0032292' => 'camsi', 'CSS0032464' => 'camsi', 'CSS0037153' => 'camsi', 'CSS0039256' => 'camsi', 'CSS0048392' => 'camsi', 'CSS0050458' => 'camsi', 'DCAR_004224' => 'dca', 'DCAR_006147' => 'dca', 'DCAR_006465' => 'dca', 'DCAR_008159' => 'dca', 'DCAR_012164' => 'dca', 'DCAR_019764' => 'dca', 'Dinv05418' => 'din', 'Dinv10839' => 'din', 'Dinv12521' => 'din', 'Dinv13900' => 'din', 'Dinv29426' => 'din', 'Duzib150G0263' => 'dzi', 'Duzib168G1178' => 'dzi', 'Duzib168G1924' => 'dzi', 'Duzib170G0299' => 'dzi', 'Duzib170G0813' => 'dzi', 'Duzib235G1128' => 'dzi', 'Duzib248G1060' => 'dzi', 'ECA232G1910' => 'eca', 'ECA233G4621' => 'eca', 'ECA238G1216' => 'eca', 'ECA238G1784' => 'eca', 'ECA248G1242' => 'eca', 'EL10Ac8g20071' => 'bvu', 'EL10Ac9g21086' => 'bvu', 'EL10Ac9g22407' => 'bvu', 'EL10Ac9g22412' => 'bvu', 'Eucgr.A01119' => 'egr', 'Eucgr.E04043' => 'egr', 'Eucgr.J00428' => 'egr', 'Eucgr.J00958' => 'egr', 'FAN11G3091' => 'fan', 'FAN11G3651' => 'fan', 'FAN16G2566' => 'fan', 'FAN21G3155' => 'fan', 'FAN21G3400' => 'fan', 'FAN21G3543' => 'fan', 'FAN25G0234' => 'fan', 'FAN25G1422' => 'fan', 'FAN25G3392' => 'fan', 'FvH4_3g01940' => 'fve', 'FvH4_3g29870' => 'fve', 'FvH4_3g33680' => 'fve', 'Glyma.09G004200' => 'gma', 'Glyma.11G151288' => 'gma', 'Glyma.11G189100' => 'gma', 'Glyma.12G072500' => 'gma', 'Glyma.12G085500' => 'gma', 'Glyma.12G181800' => 'gma', 'Glyma.12G193000' => 'gma', 'Glyma.13G309300' => 'gma', 'Glyma.13G319000' => 'gma', 'Glyma.17G012600' => 'gma', 'Gohir.A06G148600' => 'ghi', 'Gohir.A07G115800' => 'ghi', 'Gohir.A08G003600' => 'ghi', 'Gohir.A09G093300' => 'ghi', 'Gohir.A09G105400' => 'ghi', 'Gohir.A09G105500' => 'ghi', 'Gohir.D06G154600' => 'ghi', 'Gohir.D07G120200' => 'ghi', 'Gohir.D08G013900' => 'ghi', 'Gohir.D09G093100' => 'ghi', 'Gohir.D09G102200' => 'ghi', 'Gohir.D09G102300' => 'ghi', 'Gorai.001G129400' => 'gra', 'Gorai.004G008200' => 'gra', 'Gorai.006G109800' => 'gra', 'Gorai.006G119500' => 'gra', 'Gorai.006G121300' => 'gra', 'Gorai.010G180700' => 'gra', 'GSVIVG01012716001' => 'vvi', 'GSVIVG01025118001' => 'vvi', 'GSVIVG01030439001' => 'vvi', 'GSVIVG01031397001' => 'vvi', 'HanXRQChr01g0004201' => 'han', 'HanXRQChr02g0054941' => 'han', 'HanXRQChr05g0141811' => 'han', 'HanXRQChr07g0197751' => 'han', 'HanXRQChr11g0346691' => 'han', 'HanXRQChr13g0396971' => 'han', 'HanXRQChr14g0432951' => 'han', 'HanXRQChr14g0452001' => 'han', 'HanXRQChr15g0496681' => 'han', 'HanXRQChr17g0557491' => 'han', 'HanXRQChr17g0557501' => 'han', 'Haze_06809' => 'cav', 'Haze_12852' => 'cav', 'Haze_15850' => 'cav', 'Haze_23446' => 'cav', 'Haze_23942' => 'cav', 'Haze_23943' => 'cav', 'Hma1.2p1_0091F.1_g046450' => 'hma', 'Hma1.2p1_0128F.1_g059910' => 'hma', 'Hma1.2p1_0249F.1_g102260' => 'hma', 'Hma1.2p1_0453F.1_g156190' => 'hma', 'Hma1.2p1_0695F.1_g204380' => 'hma', 'Hma1.2p1_0749F.1_g212650' => 'hma', 'Hma1.2p1_2156F.1_g315420' => 'hma', 'Hma1.2p1_2686F.1_g326940' => 'hma', 'HPP92_006428' => 'vpl', 'HPP92_012069' => 'vpl', 'HPP92_014129' => 'vpl', 'HPP92_014133' => 'vpl', 'HPP92_017315' => 'vpl', 'HPP92_026445' => 'vpl', 'HPP92_026446' => 'vpl', 'Hund00774' => 'sun', 'Hund07682' => 'sun', 'Hund21413' => 'sun', 'Hund23462' => 'sun', 'Hund23463' => 'sun', 'Lalb_Chr03g0027911' => 'lal', 'Lalb_Chr13g0304271' => 'lal', 'Lalb_Chr19g0137471' => 'lal', 'Lalb_Chr22g0350651' => 'lal', 'Lalb_Chr24g0395151' => 'lal', 'Lj1A1231T40' => 'lonja', 'Lj1A221T48' => 'lonja', 'Lj1C924T12' => 'lonja', 'Lj2C993G6' => 'lonja', 'Lj3g0005790' => 'lja', 'Lj3g0015432' => 'lja', 'Lj3g0017722' => 'lja', 'Lj3g0018497' => 'lja', 'Lj4g0025071' => 'lja', 'Lsat_1_v5_gn_1_129680' => 'lsa', 'Lsat_1_v5_gn_2_25321' => 'lsa', 'Lsat_1_v5_gn_2_95461' => 'lsa', 'Lsat_1_v5_gn_4_159620' => 'lsa', 'Lsat_1_v5_gn_6_41301' => 'lsa', 'Lsat_1_v5_gn_6_74660' => 'lsa', 'Lsat_1_v5_gn_7_11520' => 'lsa', 'Lsat_1_v5_gn_9_67680' => 'lsa', 'Manes.04G008300' => 'mes', 'Manes.04G008400' => 'mes', 'Manes.04G026500' => 'mes', 'Manes.10G135300' => 'mes', 'Manes.11G157300' => 'mes', 'Manes.12G074000' => 'mes', 'Manes.16G006200' => 'mes', 'Manes.17G026400' => 'mes', 'Mapoly0024s0086' => 'mpo', 'Mapoly0024s0087' => 'mpo', 'Mapoly0071s0057' => 'mpo', 'Mapoly0204s0012' => 'mpo', 'MBI04_g37681_MAGBIO' => 'mbi', 'MBI05_g17779_MAGBIO' => 'mbi', 'MBI12_g31184_MAGBIO' => 'mbi', 'MBI17_g11083_MAGBIO' => 'mbi', 'MBI18_g03883_MAGBIO' => 'mbi', 'MBI18_g28940_MAGBIO' => 'mbi', 'MCO01G690' => 'mco', 'MD03G1109900' => 'mdo', 'MD03G1134800' => 'mdo', 'MD05G1348000' => 'mdo', 'MD10G1322400' => 'mdo', 'MD11G1123300' => 'mdo', 'MD11G1157600' => 'mdo', 'Medtr2g084875' => 'mtr', 'Medtr2g088130' => 'mtr', 'Medtr4g055310' => 'mtr', 'Medtr4g061070' => 'mtr', 'Medtr4g132250' => 'mtr', 'MELO3C004795.2' => 'cme', 'MELO3C004797.2' => 'cme', 'MELO3C007396.2' => 'cme', 'MELO3C019277.2' => 'cme', 'MELO3C021449.2' => 'cme', 'MELO3C025736.2' => 'cme', 'Migut.D02175' => 'egut', 'Migut.H01573' => 'egut', 'Migut.M01327' => 'egut', 'Migut.N02513' => 'egut', 'MSTRG.14638' => 'ama', 'MSTRG.18632' => 'ama', 'MSTRG.7203' => 'ama', 'Nitab4.5_0000533g0140' => 'nta', 'Nitab4.5_0000888g0150' => 'nta', 'Nitab4.5_0001453g0040' => 'nta', 'Nitab4.5_0002827g0090' => 'nta', 'Nitab4.5_0003082g0040' => 'nta', 'Nitab4.5_0007799g0040' => 'nta', 'Nitab4.5_0008983g0010' => 'nta', 'Nitab4.5_0009017g0020' => 'nta', 'Nn1g02132' => 'nnu', 'Nn1g03492' => 'nnu', 'Nn1g03493' => 'nnu', 'Nn1g03494' => 'nnu', 'Nn1g07164' => 'nnu', 'Nn1g07291' => 'nnu', 'Nn2g10655' => 'nnu', 'Nn2g11652' => 'nnu', 'Nn2g14008' => 'nnu', 'Nn3g17476' => 'nnu', 'Nn3g17477' => 'nnu', 'Nn4g22370' => 'nnu', 'Nn4g25255' => 'nnu', 'Nn5g27755' => 'nnu', 'Nn6g34260' => 'nnu', 'Nn6g35041' => 'nnu', 'Oeu005924.1' => 'oeu', 'Oeu008383.1' => 'oeu', 'Oeu014928.1' => 'oeu', 'Oeu019889.1' => 'oeu', 'Oeu022271.1' => 'oeu', 'Oeu025271.1' => 'oeu', 'Oeu036302.1' => 'oeu', 'Oeu044100.1' => 'oeu', 'Os01g0528300' => 'osa', 'Os03g0286200' => 'osa', 'Os04g0406600' => 'osa', 'Os07g0512000' => 'osa', 'Os07g0694600' => 'osa', 'Os08g0411000' => 'osa', 'Os09g0565700' => 'osa', 'Os09g0566050' => 'osa', 'Os10g0523700' => 'osa', 'Peaxi162Scf00002g00514' => 'pax', 'Peaxi162Scf00047g01817' => 'pax', 'Peaxi162Scf00114g00001' => 'pax', 'Peaxi162Scf00147g00613' => 'pax', 'Peaxi162Scf00389g00425' => 'pax', 'PGR042G1139' => 'pgr', 'PGR042G3273' => 'pgr', 'PGR102G2180' => 'pgr', 'PGR119G0234' => 'pgr', 'PGR119G0668' => 'pgr', 'PGSC0003DMG400007122' => 'stu', 'PGSC0003DMG400016478' => 'stu', 'PGSC0003DMG400025374' => 'stu', 'PGSC0003DMG400026536' => 'stu', 'Phvul.003G079600' => 'pvu', 'Phvul.005G115600' => 'pvu', 'Phvul.005G127100' => 'pvu', 'Phvul.006G149500' => 'pvu', 'Phvul.006G149600' => 'pvu', 'Phvul.011G071800' => 'pvu', 'Phvul.011G090400' => 'pvu', 'Potri.004G013400' => 'ptr', 'Potri.004G188100' => 'ptr', 'Potri.008G195500' => 'ptr', 'Potri.009G148800' => 'ptr', 'Potri.011G004700' => 'ptr', 'Pp3c17_22810' => 'ppa', 'Pp3c18_4480' => 'ppa', 'Pp3c19_13030' => 'ppa', 'Pp3c1_33620' => 'ppa', 'Pp3c2_9380' => 'ppa', 'PRCOL_00001023' => 'pco', 'Prupe.3G216300' => 'ppe', 'Prupe.4G019500' => 'ppe', 'Prupe.6G092500' => 'ppe', 'Prupe.6G119200' => 'ppe', 'Psat0s1945g0080' => 'psa', 'Psat0s4167g0040' => 'psa', 'Psat1g185800' => 'psa', 'Psat4g006440' => 'psa', 'Psat4g006480' => 'psa', 'Psat4g168120' => 'psa', 'Psat5g255680' => 'psa', 'Psat5g261760' => 'psa', 'Psat7g222120' => 'psa', 'PSO063G7252' => 'pso', 'PSO170G4778' => 'pso', 'PSO210G2249' => 'pso', 'PSO339G2411' => 'pso', 'PSO339G2457' => 'pso', 'PSO339G2854' => 'pso', 'PSO339G4288' => 'pso', 'PSO339G4615' => 'pso', 'PSO384G2796' => 'pso', 'PSO384G2940' => 'pso', 'PSO384G4227' => 'pso', 'PSO478G1425' => 'pso', 'PSO541G3863' => 'pso', 'PSO675G0507' => 'pso', 'PSO782G0338' => 'pso', 'PSO832G0644' => 'pso', 'QL01p013664' => 'qlo', 'QL01p036598' => 'qlo', 'QL05p072984' => 'qlo', 'QL08p005768' => 'qlo', 'QL08p032743' => 'qlo', 'QL93p0073_0439' => 'qlo', 'QL93p0073_0444' => 'qlo', 'RcHm_v2.0_Chr5g0002851' => 'rch', 'RcHm_v2.0_Chr5g0055201' => 'rch', 'RcHm_v2.0_Chr5g0061191' => 'rch', 'RcHm_v2.0_Chr7g0203231' => 'rch', 'Rhsim01G0208100' => 'rsi', 'Rhsim01G0208200' => 'rsi', 'Rhsim02G0106500' => 'rsi', 'Rhsim03G0107900' => 'rsi', 'Rhsim06G0163400' => 'rsi', 'Rhsim13G0105200' => 'rsi', 'Sabra04G0006300' => 'sbr', 'Sabra04G0127000' => 'sbr', 'Sabra08G0148700' => 'sbr', 'Sabra09G0117400' => 'sbr', 'SalBow1G3326' => 'sbo', 'SalBow3G3228' => 'sbo', 'SalBow6G1634' => 'sbo', 'SalBow6G3603' => 'sbo', 'SalBow6G5266' => 'sbo', 'SalBow7G2265' => 'sbo', 'SalBow8G0850' => 'sbo', 'SalBow8G2592' => 'sbo', 'Sc05g0009240' => 'sci', 'Sc12g0002300' => 'sci', 'Sc21g0000100' => 'sci', 'Sc21g0004720' => 'sci', 'Sed0002949' => 'sed', 'Sed0004114' => 'sed', 'Sed0004306' => 'sed', 'Sed0006172' => 'sed', 'Sed0008413' => 'sed', 'Sed0013809' => 'sed', 'Sed0019556' => 'sed', 'SEGI_03570' => 'sgi', 'SEGI_07859' => 'sgi', 'SEGI_15042' => 'sgi', 'SEGI_16263' => 'sgi', 'SEGI_16552' => 'sgi', 'SEGI_24331' => 'sgi', 'SEGI_27316' => 'sgi', 'SEGI_29521' => 'sgi', 'SEGI_41342' => 'sgi', 'SGA_v2.0_scaffold27G11617' => 'sas', 'SGA_v2.0_scaffold316G48428' => 'sas', 'SGA_v2.0_scaffold49G18261' => 'sas', 'SGA_v2.0_scaffold7G03831' => 'sas', 'SGA_v2.0_scaffold93G28359' => 'sas', 'SHI02210' => 'shi', 'SHI06028' => 'shi', 'SHI06321' => 'shi', 'SMO111G0012' => 'smo', 'SMO228G0080' => 'smo', 'SMO356G0756' => 'smo', 'Solyc02g080620.3' => 'sly', 'Solyc06g074530.1' => 'sly', 'Solyc11g066890.1' => 'sly', 'Solyc11g072520.3' => 'sly', 'Sopen02g025330' => 'spe', 'Sopen06g031000' => 'spe', 'Sopen09g008240' => 'spe', 'Sopen09g025210' => 'spe', 'Sopen11g026600' => 'spe', 'Sopen11g030170' => 'spe', 'Sp1g10420' => 'spa', 'Sp3g06570' => 'spa', 'Sp4g10660' => 'spa', 'Sp5g16460' => 'spa', 'Sp6g22710' => 'spa', 'TAR365G0112' => 'tar', 'TAR369G0717' => 'tar', 'TAR374G0976' => 'tar', 'TAR623G1128' => 'tar', 'TAR626G1937' => 'tar', 'TAR627G0123' => 'tar', 'TAR628G0305' => 'tar', 'TAR636G1176' => 'tar', 'TAR636G2442' => 'tar', 'THA.LOC104800556' => 'tha', 'THA.LOC104809501' => 'tha', 'THA.LOC104815126' => 'tha', 'THA.LOC104815732' => 'tha', 'THA.LOC104823528' => 'tha', 'Thecc.02G365600' => 'tca', 'Thecc.06G222300' => 'tca', 'Thecc.09G261800' => 'tca', 'Thecc.09G291400' => 'tca', 'Thhalv10003028m.g' => 'esa', 'Thhalv10007886m.g' => 'esa', 'Thhalv10016085m.g' => 'esa', 'Thhalv10016681m.g' => 'esa', 'Thhalv10020951m.g' => 'esa', 'TPR.G15598' => 'tpr', 'TPR.G29305' => 'tpr', 'TPR.G32395' => 'tpr', 'TPR.G36998' => 'tpr', 'TPR.G4227' => 'tpr', 'TWI18G1433' => 'twi', 'TWI31G0755' => 'twi', 'TWI38G0912' => 'twi', 'TWI75G1097' => 'twi', 'TWI75G1619' => 'twi', 'TWI79G1336' => 'twi', 'unitig_0.g943' => 'ugi', 'unitig_0.g944' => 'ugi', 'unitig_22.g6646' => 'ugi', 'unitig_37.g12681' => 'ugi', 'unitig_8.g3290' => 'ugi', 'vmacro03278' => 'vma', 'vmacro12197' => 'vma', 'vmacro14478' => 'vma', 'vmacro15787' => 'vma', 'vmacro15789' => 'vma', 'vmacro15790' => 'vma', 'vmacro15806' => 'vma', 'vmacro22907' => 'vma', 'vmacro22908' => 'vma', 'vmacro22909' => 'vma', 'vmacro23108' => 'vma', 'VMungo0540G0540' => 'vmu', 'VMungo0540G2468' => 'vmu', 'VMungo1080G0390' => 'vmu', 'VMungo1080G1165' => 'vmu', 'VMungo1127G0170' => 'vmu', 'VMungo1127G2099' => 'vmu', 'VMungo1215G3013' => 'vmu', 'Zm00001eb013110' => 'zma', 'Zm00001eb084260' => 'zma', 'Zm00001eb096110' => 'zma', 'Zm00001eb217510' => 'zma', 'Zm00001eb322550' => 'zma', 'Zm00001eb390770' => 'zma', 'Zm00001eb397170' => 'zma', 'Zm00001eb404610' => 'zma', 'Zm00001eb421790' => 'zma' ) $gf_id = 'HOM05D000911' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000911' ) $data_identifier = 'HOM05D000911' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 16, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 5, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 6, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 8, 'nnu' => (int) 16, 'oeu' => (int) 8, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 5, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 16, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421790' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000911', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27780' => 'bna', 'A03p35380' => 'bna', 'A04p21160' => 'bna', 'A05p40570' => 'bna', 'A06p26900' => 'bna', 'A08p33230' => 'bna', 'A09p65960' => 'bna', 'A10p18290' => 'bna', 'Aa31LG1G12990' => 'aar', 'Aa31LG1G2980' => 'aar', 'Aa31LG4G14320' => 'aar', 'Aa31LG7G11800' => 'aar', 'Aa31sc36G50' => 'aar', 'Aa31sc36G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3721' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5459' => 'aag', 'Actinidia03028' => 'ach', 'Actinidia03753' => 'ach', 'Actinidia04187' => 'ach', 'Actinidia05509' => 'ach', 'Actinidia24180' => 'ach', 'Actinidia26906' => 'ach', 'Actinidia37097' => 'ach', 'Actinidia38249' => 'ach', 'Ah.01g003470' => 'amhyb', 'Ah.01g004580' => 'amhyb', 'Ah.01g014850' => 'amhyb', 'Ah.01g016830' => 'amhyb', 'Ah.14g088000' => 'amhyb', 'AL1G22980' => 'aly', 'AL3G18990' => 'aly', 'AL4G22440' => 'aly', 'AL4G33180' => 'aly', 'AL5G22920' => 'aly', 'AL6G33660' => 'aly', 'AL8G20720' => 'aly', 'Aqoxy1G00935' => 'aox', 'Aqoxy1G02094' => 'aox', 'Aqoxy2G01239' => 'aox', 'Aqoxy4G01870' => 'aox', 'Aqoxy7G00450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.36ZVTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71EM27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5D6C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH3WRE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3NCM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RIM768' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YB5YRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z36GDV' => 'arhy', 'AT1G08250' => 'ath', 'AT1G11790' => 'ath', 'AT2G27820' => 'ath', 'AT3G07630' => 'ath', 'AT3G44720' => 'ath', 'AT5G22630' => 'ath', 'ATR0693G304' => 'atr', 'ATR0794G109' => 'atr', 'ATR0820G120' => 'atr', 'ATR1159G064' => 'atr', 'Atru.chr10.2239' => 'acertr', 'Atru.chr3.3371' => 'acertr', 'Atru.chr6.3202' => 'acertr', 'AUR62006499' => 'cqu', 'AUR62012718' => 'cqu', 'AUR62021938' => 'cqu', 'AUR62023932' => 'cqu', 'AUR62025034' => 'cqu', 'AUR62025035' => 'cqu', 'AUR62038307' => 'cqu', 'AUR62043466' => 'cqu', 'BcaB02g10748' => 'bca', 'BcaB03g13231' => 'bca', 'BcaB03g14689' => 'bca', 'BcaB05g22716' => 'bca', 'BcaB06g28172' => 'bca', 'BcaB08g36413' => 'bca', 'BcaC01g02186' => 'bca', 'BcaC01g04272' => 'bca', 'BcaC02g08080' => 'bca', 'BcaC02g08227' => 'bca', 'BcaC03g13901' => 'bca', 'BcaC04g19593' => 'bca', 'BcaC04g20874' => 'bca', 'BcaC05g29557' => 'bca', 'BcaC06g35505' => 'bca', 'BcaC07g41954' => 'bca', 'BcaC07g41955' => 'bca', 'BcaC07g41956' => 'bca', 'BcaC07g42519' => 'bca', 'BcaC07g42520' => 'bca', 'BcaC07g42523' => 'bca', 'BcaC07g42524' => 'bca', 'BcaC07g42525' => 'bca', 'BcaC08g47480' => 'bca', 'BcaC08g47481' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00530' => 'bna', 'BolC2t07178H' => 'bol', 'BolC3t16567H' => 'bol', 'BolC4t27234H' => 'bol', 'BolC5t29728H' => 'bol', 'BolC5t34622H' => 'bol', 'BolC6t40321H' => 'bol', 'BolC7t42028H' => 'bol', 'BolC8t49125H' => 'bol', 'BolC8t52538H' => 'bol', 'BolC8t52539H' => 'bol', 'BolC9t56681H' => 'bol', 'BolC9t58266H' => 'bol', 'BolSC21t60294H' => 'bol', 'BraA02t05670Z' => 'bra', 'BraA03t12716Z' => 'bra', 'BraA04t17685Z' => 'bra', 'BraA05t22788Z' => 'bra', 'BraA06t24032Z' => 'bra', 'BraA06t25625Z' => 'bra', 'BraA07t27930Z' => 'bra', 'BraA08t35242Z' => 'bra', 'BraA09t38609Z' => 'bra', 'BraA10t43905Z' => 'bra', 'C02p11060' => 'bna', 'C03p42990' => 'bna', 'C03p67310' => 'bna', 'C04p56990' => 'bna', 'C04p58660' => 'bna', 'C05p09890' => 'bna', 'C05p59680' => 'bna', 'C06p19830' => 'bna', 'C06p53040' => 'bna', 'C07p15230' => 'bna', 'C08p50070' => 'bna', 'C08p50090' => 'bna', 'C09p38330' => 'bna', 'C09p53940' => 'bna', 'CAN.G1014.1' => 'can', 'CAN.G644.30' => 'can', 'CAN.G84.47' => 'can', 'CAN.G919.8' => 'can', 'CANSAT54G0113' => 'cansat', 'CANSAT54G1286' => 'cansat', 'CANSAT64G1020' => 'cansat', 'CARHR008080' => 'chi', 'CARHR008090' => 'chi', 'CARHR012130' => 'chi', 'CARHR038390' => 'chi', 'CARHR082330' => 'chi', 'CARHR120520' => 'chi', 'CARHR151470' => 'chi', 'CARHR190950' => 'chi', 'Carub.0001s0760' => 'cru', 'Carub.0001s1146' => 'cru', 'Carub.0003s0721' => 'cru', 'Carub.0004s0858' => 'cru', 'Carub.0005s1040' => 'cru', 'Carub.0006s2035' => 'cru', 'Carub.0015s0005' => 'cru', 'Ca_01607_v3' => 'car', 'Ca_01677_v3' => 'car', 'Ca_06087_v3' => 'car', 'Ca_19238_v3' => 'car', 'Ca_19373_v3' => 'car', 'Ca_21079_v3' => 'car', 'CBR_g54016' => 'cbr', 'CBR_g54018' => 'cbr', 'CBR_g54020' => 'cbr', 'Cc01_g09780' => 'ccan', 'Cc01_g11680' => 'ccan', 'Cc02_g15610' => 'ccan', 'Cc05_g04350' => 'ccan', 'Cc09_g01580' => 'ccan', 'CDE01G0795' => 'cde', 'CDE02G2024' => 'cde', 'CDE02G2260' => 'cde', 'CDE02G4561' => 'cde', 'CDE05G2733' => 'cde', 'CDE05G3422' => 'cde', 'CDE06G2003' => 'cde', 'CDE08G0576' => 'cde', 'CDE09G0048' => 'cde', 'CDE11G0805' => 'cde', 'Cfa003644' => 'cfa', 'Cfa006290' => 'cfa', 'Cfa010080' => 'cfa', 'Cfa011376' => 'cfa', 'Cfa011576' => 'cfa', 'Cfa011577' => 'cfa', 'Cfa014389' => 'cfa', 'Ciclev10006044m.g' => 'ccl', 'Ciclev10006954m.g' => 'ccl', 'Ciclev10015131m.g' => 'ccl', 'Ciclev10015580m.g' => 'ccl', 'Ciclev10028359m.g' => 'ccl', 'Ciclev10028573m.g' => 'ccl', 'CiPaw.03G159300' => 'cil', 'CiPaw.04G115100' => 'cil', 'CiPaw.09G092800' => 'cil', 'CiPaw.10G071800' => 'cil', 'CiPaw.13G105800' => 'cil', 'CiPaw.13G141000' => 'cil', 'CiPaw.14G103400' => 'cil', 'ClCG01G012700' => 'cla', 'ClCG01G012720' => 'cla', 'ClCG01G021920' => 'cla', 'ClCG02G008870' => 'cla', 'ClCG02G020840' => 'cla', 'ClCG02G021930' => 'cla', 'COL.COLO4_19302' => 'col', 'COL.COLO4_25262' => 'col', 'COL.COLO4_31788' => 'col', 'Cpa.g.c34684' => 'cpa', 'Cpa.g.c36520.1' => 'cpa', 'Cpa.g.c45626' => 'cpa', 'Cpa.g.sc121.17' => 'cpa', 'Cpa.g.sc13.22' => 'cpa', 'Cpa.g.sc87.88' => 'cpa', 'Cre06.g261800' => 'cre', 'CsaV3_1G014500' => 'csa', 'CsaV3_1G014510' => 'csa', 'CsaV3_2G034880' => 'csa', 'CsaV3_6G014760' => 'csa', 'CsaV3_6G021500' => 'csa', 'CsaV3_6G048980' => 'csa', 'CSS0002511' => 'camsi', 'CSS0007556' => 'camsi', 'CSS0008532' => 'camsi', 'CSS0009709' => 'camsi', 'CSS0010486' => 'camsi', 'CSS0016768' => 'camsi', 'CSS0023512' => 'camsi', 'CSS0025341' => 'camsi', 'CSS0027999' => 'camsi', 'CSS0028944' => 'camsi', 'CSS0032292' => 'camsi', 'CSS0032464' => 'camsi', 'CSS0037153' => 'camsi', 'CSS0039256' => 'camsi', 'CSS0048392' => 'camsi', 'CSS0050458' => 'camsi', 'DCAR_004224' => 'dca', 'DCAR_006147' => 'dca', 'DCAR_006465' => 'dca', 'DCAR_008159' => 'dca', 'DCAR_012164' => 'dca', 'DCAR_019764' => 'dca', 'Dinv05418' => 'din', 'Dinv10839' => 'din', 'Dinv12521' => 'din', 'Dinv13900' => 'din', 'Dinv29426' => 'din', 'Duzib150G0263' => 'dzi', 'Duzib168G1178' => 'dzi', 'Duzib168G1924' => 'dzi', 'Duzib170G0299' => 'dzi', 'Duzib170G0813' => 'dzi', 'Duzib235G1128' => 'dzi', 'Duzib248G1060' => 'dzi', 'ECA232G1910' => 'eca', 'ECA233G4621' => 'eca', 'ECA238G1216' => 'eca', 'ECA238G1784' => 'eca', 'ECA248G1242' => 'eca', 'EL10Ac8g20071' => 'bvu', 'EL10Ac9g21086' => 'bvu', 'EL10Ac9g22407' => 'bvu', 'EL10Ac9g22412' => 'bvu', 'Eucgr.A01119' => 'egr', 'Eucgr.E04043' => 'egr', 'Eucgr.J00428' => 'egr', 'Eucgr.J00958' => 'egr', 'FAN11G3091' => 'fan', 'FAN11G3651' => 'fan', 'FAN16G2566' => 'fan', 'FAN21G3155' => 'fan', 'FAN21G3400' => 'fan', 'FAN21G3543' => 'fan', 'FAN25G0234' => 'fan', 'FAN25G1422' => 'fan', 'FAN25G3392' => 'fan', 'FvH4_3g01940' => 'fve', 'FvH4_3g29870' => 'fve', 'FvH4_3g33680' => 'fve', 'Glyma.09G004200' => 'gma', 'Glyma.11G151288' => 'gma', 'Glyma.11G189100' => 'gma', 'Glyma.12G072500' => 'gma', 'Glyma.12G085500' => 'gma', 'Glyma.12G181800' => 'gma', 'Glyma.12G193000' => 'gma', 'Glyma.13G309300' => 'gma', 'Glyma.13G319000' => 'gma', 'Glyma.17G012600' => 'gma', 'Gohir.A06G148600' => 'ghi', 'Gohir.A07G115800' => 'ghi', 'Gohir.A08G003600' => 'ghi', 'Gohir.A09G093300' => 'ghi', 'Gohir.A09G105400' => 'ghi', 'Gohir.A09G105500' => 'ghi', 'Gohir.D06G154600' => 'ghi', 'Gohir.D07G120200' => 'ghi', 'Gohir.D08G013900' => 'ghi', 'Gohir.D09G093100' => 'ghi', 'Gohir.D09G102200' => 'ghi', 'Gohir.D09G102300' => 'ghi', 'Gorai.001G129400' => 'gra', 'Gorai.004G008200' => 'gra', 'Gorai.006G109800' => 'gra', 'Gorai.006G119500' => 'gra', 'Gorai.006G121300' => 'gra', 'Gorai.010G180700' => 'gra', 'GSVIVG01012716001' => 'vvi', 'GSVIVG01025118001' => 'vvi', 'GSVIVG01030439001' => 'vvi', 'GSVIVG01031397001' => 'vvi', 'HanXRQChr01g0004201' => 'han', 'HanXRQChr02g0054941' => 'han', 'HanXRQChr05g0141811' => 'han', 'HanXRQChr07g0197751' => 'han', 'HanXRQChr11g0346691' => 'han', 'HanXRQChr13g0396971' => 'han', 'HanXRQChr14g0432951' => 'han', 'HanXRQChr14g0452001' => 'han', 'HanXRQChr15g0496681' => 'han', 'HanXRQChr17g0557491' => 'han', 'HanXRQChr17g0557501' => 'han', 'Haze_06809' => 'cav', 'Haze_12852' => 'cav', 'Haze_15850' => 'cav', 'Haze_23446' => 'cav', 'Haze_23942' => 'cav', 'Haze_23943' => 'cav', 'Hma1.2p1_0091F.1_g046450' => 'hma', 'Hma1.2p1_0128F.1_g059910' => 'hma', 'Hma1.2p1_0249F.1_g102260' => 'hma', 'Hma1.2p1_0453F.1_g156190' => 'hma', 'Hma1.2p1_0695F.1_g204380' => 'hma', 'Hma1.2p1_0749F.1_g212650' => 'hma', 'Hma1.2p1_2156F.1_g315420' => 'hma', 'Hma1.2p1_2686F.1_g326940' => 'hma', 'HPP92_006428' => 'vpl', 'HPP92_012069' => 'vpl', 'HPP92_014129' => 'vpl', 'HPP92_014133' => 'vpl', 'HPP92_017315' => 'vpl', 'HPP92_026445' => 'vpl', 'HPP92_026446' => 'vpl', 'Hund00774' => 'sun', 'Hund07682' => 'sun', 'Hund21413' => 'sun', 'Hund23462' => 'sun', 'Hund23463' => 'sun', 'Lalb_Chr03g0027911' => 'lal', 'Lalb_Chr13g0304271' => 'lal', 'Lalb_Chr19g0137471' => 'lal', 'Lalb_Chr22g0350651' => 'lal', 'Lalb_Chr24g0395151' => 'lal', 'Lj1A1231T40' => 'lonja', 'Lj1A221T48' => 'lonja', 'Lj1C924T12' => 'lonja', 'Lj2C993G6' => 'lonja', 'Lj3g0005790' => 'lja', 'Lj3g0015432' => 'lja', 'Lj3g0017722' => 'lja', 'Lj3g0018497' => 'lja', 'Lj4g0025071' => 'lja', 'Lsat_1_v5_gn_1_129680' => 'lsa', 'Lsat_1_v5_gn_2_25321' => 'lsa', 'Lsat_1_v5_gn_2_95461' => 'lsa', 'Lsat_1_v5_gn_4_159620' => 'lsa', 'Lsat_1_v5_gn_6_41301' => 'lsa', 'Lsat_1_v5_gn_6_74660' => 'lsa', 'Lsat_1_v5_gn_7_11520' => 'lsa', 'Lsat_1_v5_gn_9_67680' => 'lsa', 'Manes.04G008300' => 'mes', 'Manes.04G008400' => 'mes', 'Manes.04G026500' => 'mes', 'Manes.10G135300' => 'mes', 'Manes.11G157300' => 'mes', 'Manes.12G074000' => 'mes', 'Manes.16G006200' => 'mes', 'Manes.17G026400' => 'mes', 'Mapoly0024s0086' => 'mpo', 'Mapoly0024s0087' => 'mpo', 'Mapoly0071s0057' => 'mpo', 'Mapoly0204s0012' => 'mpo', 'MBI04_g37681_MAGBIO' => 'mbi', 'MBI05_g17779_MAGBIO' => 'mbi', 'MBI12_g31184_MAGBIO' => 'mbi', 'MBI17_g11083_MAGBIO' => 'mbi', 'MBI18_g03883_MAGBIO' => 'mbi', 'MBI18_g28940_MAGBIO' => 'mbi', 'MCO01G690' => 'mco', 'MD03G1109900' => 'mdo', 'MD03G1134800' => 'mdo', 'MD05G1348000' => 'mdo', 'MD10G1322400' => 'mdo', 'MD11G1123300' => 'mdo', 'MD11G1157600' => 'mdo', 'Medtr2g084875' => 'mtr', 'Medtr2g088130' => 'mtr', 'Medtr4g055310' => 'mtr', 'Medtr4g061070' => 'mtr', 'Medtr4g132250' => 'mtr', 'MELO3C004795.2' => 'cme', 'MELO3C004797.2' => 'cme', 'MELO3C007396.2' => 'cme', 'MELO3C019277.2' => 'cme', 'MELO3C021449.2' => 'cme', 'MELO3C025736.2' => 'cme', 'Migut.D02175' => 'egut', 'Migut.H01573' => 'egut', 'Migut.M01327' => 'egut', 'Migut.N02513' => 'egut', 'MSTRG.14638' => 'ama', 'MSTRG.18632' => 'ama', 'MSTRG.7203' => 'ama', 'Nitab4.5_0000533g0140' => 'nta', 'Nitab4.5_0000888g0150' => 'nta', 'Nitab4.5_0001453g0040' => 'nta', 'Nitab4.5_0002827g0090' => 'nta', 'Nitab4.5_0003082g0040' => 'nta', 'Nitab4.5_0007799g0040' => 'nta', 'Nitab4.5_0008983g0010' => 'nta', 'Nitab4.5_0009017g0020' => 'nta', 'Nn1g02132' => 'nnu', 'Nn1g03492' => 'nnu', 'Nn1g03493' => 'nnu', 'Nn1g03494' => 'nnu', 'Nn1g07164' => 'nnu', 'Nn1g07291' => 'nnu', 'Nn2g10655' => 'nnu', 'Nn2g11652' => 'nnu', 'Nn2g14008' => 'nnu', 'Nn3g17476' => 'nnu', 'Nn3g17477' => 'nnu', 'Nn4g22370' => 'nnu', 'Nn4g25255' => 'nnu', 'Nn5g27755' => 'nnu', 'Nn6g34260' => 'nnu', 'Nn6g35041' => 'nnu', 'Oeu005924.1' => 'oeu', 'Oeu008383.1' => 'oeu', 'Oeu014928.1' => 'oeu', 'Oeu019889.1' => 'oeu', 'Oeu022271.1' => 'oeu', 'Oeu025271.1' => 'oeu', 'Oeu036302.1' => 'oeu', 'Oeu044100.1' => 'oeu', 'Os01g0528300' => 'osa', 'Os03g0286200' => 'osa', 'Os04g0406600' => 'osa', 'Os07g0512000' => 'osa', 'Os07g0694600' => 'osa', 'Os08g0411000' => 'osa', 'Os09g0565700' => 'osa', 'Os09g0566050' => 'osa', 'Os10g0523700' => 'osa', 'Peaxi162Scf00002g00514' => 'pax', 'Peaxi162Scf00047g01817' => 'pax', 'Peaxi162Scf00114g00001' => 'pax', 'Peaxi162Scf00147g00613' => 'pax', 'Peaxi162Scf00389g00425' => 'pax', 'PGR042G1139' => 'pgr', 'PGR042G3273' => 'pgr', 'PGR102G2180' => 'pgr', 'PGR119G0234' => 'pgr', 'PGR119G0668' => 'pgr', 'PGSC0003DMG400007122' => 'stu', 'PGSC0003DMG400016478' => 'stu', 'PGSC0003DMG400025374' => 'stu', 'PGSC0003DMG400026536' => 'stu', 'Phvul.003G079600' => 'pvu', 'Phvul.005G115600' => 'pvu', 'Phvul.005G127100' => 'pvu', 'Phvul.006G149500' => 'pvu', 'Phvul.006G149600' => 'pvu', 'Phvul.011G071800' => 'pvu', 'Phvul.011G090400' => 'pvu', 'Potri.004G013400' => 'ptr', 'Potri.004G188100' => 'ptr', 'Potri.008G195500' => 'ptr', 'Potri.009G148800' => 'ptr', 'Potri.011G004700' => 'ptr', 'Pp3c17_22810' => 'ppa', 'Pp3c18_4480' => 'ppa', 'Pp3c19_13030' => 'ppa', 'Pp3c1_33620' => 'ppa', 'Pp3c2_9380' => 'ppa', 'PRCOL_00001023' => 'pco', 'Prupe.3G216300' => 'ppe', 'Prupe.4G019500' => 'ppe', 'Prupe.6G092500' => 'ppe', 'Prupe.6G119200' => 'ppe', 'Psat0s1945g0080' => 'psa', 'Psat0s4167g0040' => 'psa', 'Psat1g185800' => 'psa', 'Psat4g006440' => 'psa', 'Psat4g006480' => 'psa', 'Psat4g168120' => 'psa', 'Psat5g255680' => 'psa', 'Psat5g261760' => 'psa', 'Psat7g222120' => 'psa', 'PSO063G7252' => 'pso', 'PSO170G4778' => 'pso', 'PSO210G2249' => 'pso', 'PSO339G2411' => 'pso', 'PSO339G2457' => 'pso', 'PSO339G2854' => 'pso', 'PSO339G4288' => 'pso', 'PSO339G4615' => 'pso', 'PSO384G2796' => 'pso', 'PSO384G2940' => 'pso', 'PSO384G4227' => 'pso', 'PSO478G1425' => 'pso', 'PSO541G3863' => 'pso', 'PSO675G0507' => 'pso', 'PSO782G0338' => 'pso', 'PSO832G0644' => 'pso', 'QL01p013664' => 'qlo', 'QL01p036598' => 'qlo', 'QL05p072984' => 'qlo', 'QL08p005768' => 'qlo', 'QL08p032743' => 'qlo', 'QL93p0073_0439' => 'qlo', 'QL93p0073_0444' => 'qlo', 'RcHm_v2.0_Chr5g0002851' => 'rch', 'RcHm_v2.0_Chr5g0055201' => 'rch', 'RcHm_v2.0_Chr5g0061191' => 'rch', 'RcHm_v2.0_Chr7g0203231' => 'rch', 'Rhsim01G0208100' => 'rsi', 'Rhsim01G0208200' => 'rsi', 'Rhsim02G0106500' => 'rsi', 'Rhsim03G0107900' => 'rsi', 'Rhsim06G0163400' => 'rsi', 'Rhsim13G0105200' => 'rsi', 'Sabra04G0006300' => 'sbr', 'Sabra04G0127000' => 'sbr', 'Sabra08G0148700' => 'sbr', 'Sabra09G0117400' => 'sbr', 'SalBow1G3326' => 'sbo', 'SalBow3G3228' => 'sbo', 'SalBow6G1634' => 'sbo', 'SalBow6G3603' => 'sbo', 'SalBow6G5266' => 'sbo', 'SalBow7G2265' => 'sbo', 'SalBow8G0850' => 'sbo', 'SalBow8G2592' => 'sbo', 'Sc05g0009240' => 'sci', 'Sc12g0002300' => 'sci', 'Sc21g0000100' => 'sci', 'Sc21g0004720' => 'sci', 'Sed0002949' => 'sed', 'Sed0004114' => 'sed', 'Sed0004306' => 'sed', 'Sed0006172' => 'sed', 'Sed0008413' => 'sed', 'Sed0013809' => 'sed', 'Sed0019556' => 'sed', 'SEGI_03570' => 'sgi', 'SEGI_07859' => 'sgi', 'SEGI_15042' => 'sgi', 'SEGI_16263' => 'sgi', 'SEGI_16552' => 'sgi', 'SEGI_24331' => 'sgi', 'SEGI_27316' => 'sgi', 'SEGI_29521' => 'sgi', 'SEGI_41342' => 'sgi', 'SGA_v2.0_scaffold27G11617' => 'sas', 'SGA_v2.0_scaffold316G48428' => 'sas', 'SGA_v2.0_scaffold49G18261' => 'sas', 'SGA_v2.0_scaffold7G03831' => 'sas', 'SGA_v2.0_scaffold93G28359' => 'sas', 'SHI02210' => 'shi', 'SHI06028' => 'shi', 'SHI06321' => 'shi', 'SMO111G0012' => 'smo', 'SMO228G0080' => 'smo', 'SMO356G0756' => 'smo', 'Solyc02g080620.3' => 'sly', 'Solyc06g074530.1' => 'sly', 'Solyc11g066890.1' => 'sly', 'Solyc11g072520.3' => 'sly', 'Sopen02g025330' => 'spe', 'Sopen06g031000' => 'spe', 'Sopen09g008240' => 'spe', 'Sopen09g025210' => 'spe', 'Sopen11g026600' => 'spe', 'Sopen11g030170' => 'spe', 'Sp1g10420' => 'spa', 'Sp3g06570' => 'spa', 'Sp4g10660' => 'spa', 'Sp5g16460' => 'spa', 'Sp6g22710' => 'spa', 'TAR365G0112' => 'tar', 'TAR369G0717' => 'tar', 'TAR374G0976' => 'tar', 'TAR623G1128' => 'tar', 'TAR626G1937' => 'tar', 'TAR627G0123' => 'tar', 'TAR628G0305' => 'tar', 'TAR636G1176' => 'tar', 'TAR636G2442' => 'tar', 'THA.LOC104800556' => 'tha', 'THA.LOC104809501' => 'tha', 'THA.LOC104815126' => 'tha', 'THA.LOC104815732' => 'tha', 'THA.LOC104823528' => 'tha', 'Thecc.02G365600' => 'tca', 'Thecc.06G222300' => 'tca', 'Thecc.09G261800' => 'tca', 'Thecc.09G291400' => 'tca', 'Thhalv10003028m.g' => 'esa', 'Thhalv10007886m.g' => 'esa', 'Thhalv10016085m.g' => 'esa', 'Thhalv10016681m.g' => 'esa', 'Thhalv10020951m.g' => 'esa', 'TPR.G15598' => 'tpr', 'TPR.G29305' => 'tpr', 'TPR.G32395' => 'tpr', 'TPR.G36998' => 'tpr', 'TPR.G4227' => 'tpr', 'TWI18G1433' => 'twi', 'TWI31G0755' => 'twi', 'TWI38G0912' => 'twi', 'TWI75G1097' => 'twi', 'TWI75G1619' => 'twi', 'TWI79G1336' => 'twi', 'unitig_0.g943' => 'ugi', 'unitig_0.g944' => 'ugi', 'unitig_22.g6646' => 'ugi', 'unitig_37.g12681' => 'ugi', 'unitig_8.g3290' => 'ugi', 'vmacro03278' => 'vma', 'vmacro12197' => 'vma', 'vmacro14478' => 'vma', 'vmacro15787' => 'vma', 'vmacro15789' => 'vma', 'vmacro15790' => 'vma', 'vmacro15806' => 'vma', 'vmacro22907' => 'vma', 'vmacro22908' => 'vma', 'vmacro22909' => 'vma', 'vmacro23108' => 'vma', 'VMungo0540G0540' => 'vmu', 'VMungo0540G2468' => 'vmu', 'VMungo1080G0390' => 'vmu', 'VMungo1080G1165' => 'vmu', 'VMungo1127G0170' => 'vmu', 'VMungo1127G2099' => 'vmu', 'VMungo1215G3013' => 'vmu', 'Zm00001eb013110' => 'zma', 'Zm00001eb084260' => 'zma', 'Zm00001eb096110' => 'zma', 'Zm00001eb217510' => 'zma', 'Zm00001eb322550' => 'zma', 'Zm00001eb390770' => 'zma', 'Zm00001eb397170' => 'zma', 'Zm00001eb404610' => 'zma', 'Zm00001eb421790' => 'zma' ), 'gf_id' => 'HOM05D000911', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000911' ), 'data_identifier' => 'HOM05D000911', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000911', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27780' => 'bna', 'A03p35380' => 'bna', 'A04p21160' => 'bna', 'A05p40570' => 'bna', 'A06p26900' => 'bna', 'A08p33230' => 'bna', 'A09p65960' => 'bna', 'A10p18290' => 'bna', 'Aa31LG1G12990' => 'aar', 'Aa31LG1G2980' => 'aar', 'Aa31LG4G14320' => 'aar', 'Aa31LG7G11800' => 'aar', 'Aa31sc36G50' => 'aar', 'Aa31sc36G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3721' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5459' => 'aag', 'Actinidia03028' => 'ach', 'Actinidia03753' => 'ach', 'Actinidia04187' => 'ach', 'Actinidia05509' => 'ach', 'Actinidia24180' => 'ach', 'Actinidia26906' => 'ach', 'Actinidia37097' => 'ach', 'Actinidia38249' => 'ach', 'Ah.01g003470' => 'amhyb', 'Ah.01g004580' => 'amhyb', 'Ah.01g014850' => 'amhyb', 'Ah.01g016830' => 'amhyb', 'Ah.14g088000' => 'amhyb', 'AL1G22980' => 'aly', 'AL3G18990' => 'aly', 'AL4G22440' => 'aly', 'AL4G33180' => 'aly', 'AL5G22920' => 'aly', 'AL6G33660' => 'aly', 'AL8G20720' => 'aly', 'Aqoxy1G00935' => 'aox', 'Aqoxy1G02094' => 'aox', 'Aqoxy2G01239' => 'aox', 'Aqoxy4G01870' => 'aox', 'Aqoxy7G00450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.36ZVTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71EM27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5D6C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH3WRE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3NCM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RIM768' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YB5YRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z36GDV' => 'arhy', 'AT1G08250' => 'ath', 'AT1G11790' => 'ath', 'AT2G27820' => 'ath', 'AT3G07630' => 'ath', 'AT3G44720' => 'ath', 'AT5G22630' => 'ath', 'ATR0693G304' => 'atr', 'ATR0794G109' => 'atr', 'ATR0820G120' => 'atr', 'ATR1159G064' => 'atr', 'Atru.chr10.2239' => 'acertr', 'Atru.chr3.3371' => 'acertr', 'Atru.chr6.3202' => 'acertr', 'AUR62006499' => 'cqu', 'AUR62012718' => 'cqu', 'AUR62021938' => 'cqu', 'AUR62023932' => 'cqu', 'AUR62025034' => 'cqu', 'AUR62025035' => 'cqu', 'AUR62038307' => 'cqu', 'AUR62043466' => 'cqu', 'BcaB02g10748' => 'bca', 'BcaB03g13231' => 'bca', 'BcaB03g14689' => 'bca', 'BcaB05g22716' => 'bca', 'BcaB06g28172' => 'bca', 'BcaB08g36413' => 'bca', 'BcaC01g02186' => 'bca', 'BcaC01g04272' => 'bca', 'BcaC02g08080' => 'bca', 'BcaC02g08227' => 'bca', 'BcaC03g13901' => 'bca', 'BcaC04g19593' => 'bca', 'BcaC04g20874' => 'bca', 'BcaC05g29557' => 'bca', 'BcaC06g35505' => 'bca', 'BcaC07g41954' => 'bca', 'BcaC07g41955' => 'bca', 'BcaC07g41956' => 'bca', 'BcaC07g42519' => 'bca', 'BcaC07g42520' => 'bca', 'BcaC07g42523' => 'bca', 'BcaC07g42524' => 'bca', 'BcaC07g42525' => 'bca', 'BcaC08g47480' => 'bca', 'BcaC08g47481' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00530' => 'bna', 'BolC2t07178H' => 'bol', 'BolC3t16567H' => 'bol', 'BolC4t27234H' => 'bol', 'BolC5t29728H' => 'bol', 'BolC5t34622H' => 'bol', 'BolC6t40321H' => 'bol', 'BolC7t42028H' => 'bol', 'BolC8t49125H' => 'bol', 'BolC8t52538H' => 'bol', 'BolC8t52539H' => 'bol', 'BolC9t56681H' => 'bol', 'BolC9t58266H' => 'bol', 'BolSC21t60294H' => 'bol', 'BraA02t05670Z' => 'bra', 'BraA03t12716Z' => 'bra', 'BraA04t17685Z' => 'bra', 'BraA05t22788Z' => 'bra', 'BraA06t24032Z' => 'bra', 'BraA06t25625Z' => 'bra', 'BraA07t27930Z' => 'bra', 'BraA08t35242Z' => 'bra', 'BraA09t38609Z' => 'bra', 'BraA10t43905Z' => 'bra', 'C02p11060' => 'bna', 'C03p42990' => 'bna', 'C03p67310' => 'bna', 'C04p56990' => 'bna', 'C04p58660' => 'bna', 'C05p09890' => 'bna', 'C05p59680' => 'bna', 'C06p19830' => 'bna', 'C06p53040' => 'bna', 'C07p15230' => 'bna', 'C08p50070' => 'bna', 'C08p50090' => 'bna', 'C09p38330' => 'bna', 'C09p53940' => 'bna', 'CAN.G1014.1' => 'can', 'CAN.G644.30' => 'can', 'CAN.G84.47' => 'can', 'CAN.G919.8' => 'can', 'CANSAT54G0113' => 'cansat', 'CANSAT54G1286' => 'cansat', 'CANSAT64G1020' => 'cansat', 'CARHR008080' => 'chi', 'CARHR008090' => 'chi', 'CARHR012130' => 'chi', 'CARHR038390' => 'chi', 'CARHR082330' => 'chi', 'CARHR120520' => 'chi', 'CARHR151470' => 'chi', 'CARHR190950' => 'chi', 'Carub.0001s0760' => 'cru', 'Carub.0001s1146' => 'cru', 'Carub.0003s0721' => 'cru', 'Carub.0004s0858' => 'cru', 'Carub.0005s1040' => 'cru', 'Carub.0006s2035' => 'cru', 'Carub.0015s0005' => 'cru', 'Ca_01607_v3' => 'car', 'Ca_01677_v3' => 'car', 'Ca_06087_v3' => 'car', 'Ca_19238_v3' => 'car', 'Ca_19373_v3' => 'car', 'Ca_21079_v3' => 'car', 'CBR_g54016' => 'cbr', 'CBR_g54018' => 'cbr', 'CBR_g54020' => 'cbr', 'Cc01_g09780' => 'ccan', 'Cc01_g11680' => 'ccan', 'Cc02_g15610' => 'ccan', 'Cc05_g04350' => 'ccan', 'Cc09_g01580' => 'ccan', 'CDE01G0795' => 'cde', 'CDE02G2024' => 'cde', 'CDE02G2260' => 'cde', 'CDE02G4561' => 'cde', 'CDE05G2733' => 'cde', 'CDE05G3422' => 'cde', 'CDE06G2003' => 'cde', 'CDE08G0576' => 'cde', 'CDE09G0048' => 'cde', 'CDE11G0805' => 'cde', 'Cfa003644' => 'cfa', 'Cfa006290' => 'cfa', 'Cfa010080' => 'cfa', 'Cfa011376' => 'cfa', 'Cfa011576' => 'cfa', 'Cfa011577' => 'cfa', 'Cfa014389' => 'cfa', 'Ciclev10006044m.g' => 'ccl', 'Ciclev10006954m.g' => 'ccl', 'Ciclev10015131m.g' => 'ccl', 'Ciclev10015580m.g' => 'ccl', 'Ciclev10028359m.g' => 'ccl', 'Ciclev10028573m.g' => 'ccl', 'CiPaw.03G159300' => 'cil', 'CiPaw.04G115100' => 'cil', 'CiPaw.09G092800' => 'cil', 'CiPaw.10G071800' => 'cil', 'CiPaw.13G105800' => 'cil', 'CiPaw.13G141000' => 'cil', 'CiPaw.14G103400' => 'cil', 'ClCG01G012700' => 'cla', 'ClCG01G012720' => 'cla', 'ClCG01G021920' => 'cla', 'ClCG02G008870' => 'cla', 'ClCG02G020840' => 'cla', 'ClCG02G021930' => 'cla', 'COL.COLO4_19302' => 'col', 'COL.COLO4_25262' => 'col', 'COL.COLO4_31788' => 'col', 'Cpa.g.c34684' => 'cpa', 'Cpa.g.c36520.1' => 'cpa', 'Cpa.g.c45626' => 'cpa', 'Cpa.g.sc121.17' => 'cpa', 'Cpa.g.sc13.22' => 'cpa', 'Cpa.g.sc87.88' => 'cpa', 'Cre06.g261800' => 'cre', 'CsaV3_1G014500' => 'csa', 'CsaV3_1G014510' => 'csa', 'CsaV3_2G034880' => 'csa', 'CsaV3_6G014760' => 'csa', 'CsaV3_6G021500' => 'csa', 'CsaV3_6G048980' => 'csa', 'CSS0002511' => 'camsi', 'CSS0007556' => 'camsi', 'CSS0008532' => 'camsi', 'CSS0009709' => 'camsi', 'CSS0010486' => 'camsi', 'CSS0016768' => 'camsi', 'CSS0023512' => 'camsi', 'CSS0025341' => 'camsi', 'CSS0027999' => 'camsi', 'CSS0028944' => 'camsi', 'CSS0032292' => 'camsi', 'CSS0032464' => 'camsi', 'CSS0037153' => 'camsi', 'CSS0039256' => 'camsi', 'CSS0048392' => 'camsi', 'CSS0050458' => 'camsi', 'DCAR_004224' => 'dca', 'DCAR_006147' => 'dca', 'DCAR_006465' => 'dca', 'DCAR_008159' => 'dca', 'DCAR_012164' => 'dca', 'DCAR_019764' => 'dca', 'Dinv05418' => 'din', 'Dinv10839' => 'din', 'Dinv12521' => 'din', 'Dinv13900' => 'din', 'Dinv29426' => 'din', 'Duzib150G0263' => 'dzi', 'Duzib168G1178' => 'dzi', 'Duzib168G1924' => 'dzi', 'Duzib170G0299' => 'dzi', 'Duzib170G0813' => 'dzi', 'Duzib235G1128' => 'dzi', 'Duzib248G1060' => 'dzi', 'ECA232G1910' => 'eca', 'ECA233G4621' => 'eca', 'ECA238G1216' => 'eca', 'ECA238G1784' => 'eca', 'ECA248G1242' => 'eca', 'EL10Ac8g20071' => 'bvu', 'EL10Ac9g21086' => 'bvu', 'EL10Ac9g22407' => 'bvu', 'EL10Ac9g22412' => 'bvu', 'Eucgr.A01119' => 'egr', 'Eucgr.E04043' => 'egr', 'Eucgr.J00428' => 'egr', 'Eucgr.J00958' => 'egr', 'FAN11G3091' => 'fan', 'FAN11G3651' => 'fan', 'FAN16G2566' => 'fan', 'FAN21G3155' => 'fan', 'FAN21G3400' => 'fan', 'FAN21G3543' => 'fan', 'FAN25G0234' => 'fan', 'FAN25G1422' => 'fan', 'FAN25G3392' => 'fan', 'FvH4_3g01940' => 'fve', 'FvH4_3g29870' => 'fve', 'FvH4_3g33680' => 'fve', 'Glyma.09G004200' => 'gma', 'Glyma.11G151288' => 'gma', 'Glyma.11G189100' => 'gma', 'Glyma.12G072500' => 'gma', 'Glyma.12G085500' => 'gma', 'Glyma.12G181800' => 'gma', 'Glyma.12G193000' => 'gma', 'Glyma.13G309300' => 'gma', 'Glyma.13G319000' => 'gma', 'Glyma.17G012600' => 'gma', 'Gohir.A06G148600' => 'ghi', 'Gohir.A07G115800' => 'ghi', 'Gohir.A08G003600' => 'ghi', 'Gohir.A09G093300' => 'ghi', 'Gohir.A09G105400' => 'ghi', 'Gohir.A09G105500' => 'ghi', 'Gohir.D06G154600' => 'ghi', 'Gohir.D07G120200' => 'ghi', 'Gohir.D08G013900' => 'ghi', 'Gohir.D09G093100' => 'ghi', 'Gohir.D09G102200' => 'ghi', 'Gohir.D09G102300' => 'ghi', 'Gorai.001G129400' => 'gra', 'Gorai.004G008200' => 'gra', 'Gorai.006G109800' => 'gra', 'Gorai.006G119500' => 'gra', 'Gorai.006G121300' => 'gra', 'Gorai.010G180700' => 'gra', 'GSVIVG01012716001' => 'vvi', 'GSVIVG01025118001' => 'vvi', 'GSVIVG01030439001' => 'vvi', 'GSVIVG01031397001' => 'vvi', 'HanXRQChr01g0004201' => 'han', 'HanXRQChr02g0054941' => 'han', 'HanXRQChr05g0141811' => 'han', 'HanXRQChr07g0197751' => 'han', 'HanXRQChr11g0346691' => 'han', 'HanXRQChr13g0396971' => 'han', 'HanXRQChr14g0432951' => 'han', 'HanXRQChr14g0452001' => 'han', 'HanXRQChr15g0496681' => 'han', 'HanXRQChr17g0557491' => 'han', 'HanXRQChr17g0557501' => 'han', 'Haze_06809' => 'cav', 'Haze_12852' => 'cav', 'Haze_15850' => 'cav', 'Haze_23446' => 'cav', 'Haze_23942' => 'cav', 'Haze_23943' => 'cav', 'Hma1.2p1_0091F.1_g046450' => 'hma', 'Hma1.2p1_0128F.1_g059910' => 'hma', 'Hma1.2p1_0249F.1_g102260' => 'hma', 'Hma1.2p1_0453F.1_g156190' => 'hma', 'Hma1.2p1_0695F.1_g204380' => 'hma', 'Hma1.2p1_0749F.1_g212650' => 'hma', 'Hma1.2p1_2156F.1_g315420' => 'hma', 'Hma1.2p1_2686F.1_g326940' => 'hma', 'HPP92_006428' => 'vpl', 'HPP92_012069' => 'vpl', 'HPP92_014129' => 'vpl', 'HPP92_014133' => 'vpl', 'HPP92_017315' => 'vpl', 'HPP92_026445' => 'vpl', 'HPP92_026446' => 'vpl', 'Hund00774' => 'sun', 'Hund07682' => 'sun', 'Hund21413' => 'sun', 'Hund23462' => 'sun', 'Hund23463' => 'sun', 'Lalb_Chr03g0027911' => 'lal', 'Lalb_Chr13g0304271' => 'lal', 'Lalb_Chr19g0137471' => 'lal', 'Lalb_Chr22g0350651' => 'lal', 'Lalb_Chr24g0395151' => 'lal', 'Lj1A1231T40' => 'lonja', 'Lj1A221T48' => 'lonja', 'Lj1C924T12' => 'lonja', 'Lj2C993G6' => 'lonja', 'Lj3g0005790' => 'lja', 'Lj3g0015432' => 'lja', 'Lj3g0017722' => 'lja', 'Lj3g0018497' => 'lja', 'Lj4g0025071' => 'lja', 'Lsat_1_v5_gn_1_129680' => 'lsa', 'Lsat_1_v5_gn_2_25321' => 'lsa', 'Lsat_1_v5_gn_2_95461' => 'lsa', 'Lsat_1_v5_gn_4_159620' => 'lsa', 'Lsat_1_v5_gn_6_41301' => 'lsa', 'Lsat_1_v5_gn_6_74660' => 'lsa', 'Lsat_1_v5_gn_7_11520' => 'lsa', 'Lsat_1_v5_gn_9_67680' => 'lsa', 'Manes.04G008300' => 'mes', 'Manes.04G008400' => 'mes', 'Manes.04G026500' => 'mes', 'Manes.10G135300' => 'mes', 'Manes.11G157300' => 'mes', 'Manes.12G074000' => 'mes', 'Manes.16G006200' => 'mes', 'Manes.17G026400' => 'mes', 'Mapoly0024s0086' => 'mpo', 'Mapoly0024s0087' => 'mpo', 'Mapoly0071s0057' => 'mpo', 'Mapoly0204s0012' => 'mpo', 'MBI04_g37681_MAGBIO' => 'mbi', 'MBI05_g17779_MAGBIO' => 'mbi', 'MBI12_g31184_MAGBIO' => 'mbi', 'MBI17_g11083_MAGBIO' => 'mbi', 'MBI18_g03883_MAGBIO' => 'mbi', 'MBI18_g28940_MAGBIO' => 'mbi', 'MCO01G690' => 'mco', 'MD03G1109900' => 'mdo', 'MD03G1134800' => 'mdo', 'MD05G1348000' => 'mdo', 'MD10G1322400' => 'mdo', 'MD11G1123300' => 'mdo', 'MD11G1157600' => 'mdo', 'Medtr2g084875' => 'mtr', 'Medtr2g088130' => 'mtr', 'Medtr4g055310' => 'mtr', 'Medtr4g061070' => 'mtr', 'Medtr4g132250' => 'mtr', 'MELO3C004795.2' => 'cme', 'MELO3C004797.2' => 'cme', 'MELO3C007396.2' => 'cme', 'MELO3C019277.2' => 'cme', 'MELO3C021449.2' => 'cme', 'MELO3C025736.2' => 'cme', 'Migut.D02175' => 'egut', 'Migut.H01573' => 'egut', 'Migut.M01327' => 'egut', 'Migut.N02513' => 'egut', 'MSTRG.14638' => 'ama', 'MSTRG.18632' => 'ama', 'MSTRG.7203' => 'ama', 'Nitab4.5_0000533g0140' => 'nta', 'Nitab4.5_0000888g0150' => 'nta', 'Nitab4.5_0001453g0040' => 'nta', 'Nitab4.5_0002827g0090' => 'nta', 'Nitab4.5_0003082g0040' => 'nta', 'Nitab4.5_0007799g0040' => 'nta', 'Nitab4.5_0008983g0010' => 'nta', 'Nitab4.5_0009017g0020' => 'nta', 'Nn1g02132' => 'nnu', 'Nn1g03492' => 'nnu', 'Nn1g03493' => 'nnu', 'Nn1g03494' => 'nnu', 'Nn1g07164' => 'nnu', 'Nn1g07291' => 'nnu', 'Nn2g10655' => 'nnu', 'Nn2g11652' => 'nnu', 'Nn2g14008' => 'nnu', 'Nn3g17476' => 'nnu', 'Nn3g17477' => 'nnu', 'Nn4g22370' => 'nnu', 'Nn4g25255' => 'nnu', 'Nn5g27755' => 'nnu', 'Nn6g34260' => 'nnu', 'Nn6g35041' => 'nnu', 'Oeu005924.1' => 'oeu', 'Oeu008383.1' => 'oeu', 'Oeu014928.1' => 'oeu', 'Oeu019889.1' => 'oeu', 'Oeu022271.1' => 'oeu', 'Oeu025271.1' => 'oeu', 'Oeu036302.1' => 'oeu', 'Oeu044100.1' => 'oeu', 'Os01g0528300' => 'osa', 'Os03g0286200' => 'osa', 'Os04g0406600' => 'osa', 'Os07g0512000' => 'osa', 'Os07g0694600' => 'osa', 'Os08g0411000' => 'osa', 'Os09g0565700' => 'osa', 'Os09g0566050' => 'osa', 'Os10g0523700' => 'osa', 'Peaxi162Scf00002g00514' => 'pax', 'Peaxi162Scf00047g01817' => 'pax', 'Peaxi162Scf00114g00001' => 'pax', 'Peaxi162Scf00147g00613' => 'pax', 'Peaxi162Scf00389g00425' => 'pax', 'PGR042G1139' => 'pgr', 'PGR042G3273' => 'pgr', 'PGR102G2180' => 'pgr', 'PGR119G0234' => 'pgr', 'PGR119G0668' => 'pgr', 'PGSC0003DMG400007122' => 'stu', 'PGSC0003DMG400016478' => 'stu', 'PGSC0003DMG400025374' => 'stu', 'PGSC0003DMG400026536' => 'stu', 'Phvul.003G079600' => 'pvu', 'Phvul.005G115600' => 'pvu', 'Phvul.005G127100' => 'pvu', 'Phvul.006G149500' => 'pvu', 'Phvul.006G149600' => 'pvu', 'Phvul.011G071800' => 'pvu', 'Phvul.011G090400' => 'pvu', 'Potri.004G013400' => 'ptr', 'Potri.004G188100' => 'ptr', 'Potri.008G195500' => 'ptr', 'Potri.009G148800' => 'ptr', 'Potri.011G004700' => 'ptr', 'Pp3c17_22810' => 'ppa', 'Pp3c18_4480' => 'ppa', 'Pp3c19_13030' => 'ppa', 'Pp3c1_33620' => 'ppa', 'Pp3c2_9380' => 'ppa', 'PRCOL_00001023' => 'pco', 'Prupe.3G216300' => 'ppe', 'Prupe.4G019500' => 'ppe', 'Prupe.6G092500' => 'ppe', 'Prupe.6G119200' => 'ppe', 'Psat0s1945g0080' => 'psa', 'Psat0s4167g0040' => 'psa', 'Psat1g185800' => 'psa', 'Psat4g006440' => 'psa', 'Psat4g006480' => 'psa', 'Psat4g168120' => 'psa', 'Psat5g255680' => 'psa', 'Psat5g261760' => 'psa', 'Psat7g222120' => 'psa', 'PSO063G7252' => 'pso', 'PSO170G4778' => 'pso', 'PSO210G2249' => 'pso', 'PSO339G2411' => 'pso', 'PSO339G2457' => 'pso', 'PSO339G2854' => 'pso', 'PSO339G4288' => 'pso', 'PSO339G4615' => 'pso', 'PSO384G2796' => 'pso', 'PSO384G2940' => 'pso', 'PSO384G4227' => 'pso', 'PSO478G1425' => 'pso', 'PSO541G3863' => 'pso', 'PSO675G0507' => 'pso', 'PSO782G0338' => 'pso', 'PSO832G0644' => 'pso', 'QL01p013664' => 'qlo', 'QL01p036598' => 'qlo', 'QL05p072984' => 'qlo', 'QL08p005768' => 'qlo', 'QL08p032743' => 'qlo', 'QL93p0073_0439' => 'qlo', 'QL93p0073_0444' => 'qlo', 'RcHm_v2.0_Chr5g0002851' => 'rch', 'RcHm_v2.0_Chr5g0055201' => 'rch', 'RcHm_v2.0_Chr5g0061191' => 'rch', 'RcHm_v2.0_Chr7g0203231' => 'rch', 'Rhsim01G0208100' => 'rsi', 'Rhsim01G0208200' => 'rsi', 'Rhsim02G0106500' => 'rsi', 'Rhsim03G0107900' => 'rsi', 'Rhsim06G0163400' => 'rsi', 'Rhsim13G0105200' => 'rsi', 'Sabra04G0006300' => 'sbr', 'Sabra04G0127000' => 'sbr', 'Sabra08G0148700' => 'sbr', 'Sabra09G0117400' => 'sbr', 'SalBow1G3326' => 'sbo', 'SalBow3G3228' => 'sbo', 'SalBow6G1634' => 'sbo', 'SalBow6G3603' => 'sbo', 'SalBow6G5266' => 'sbo', 'SalBow7G2265' => 'sbo', 'SalBow8G0850' => 'sbo', 'SalBow8G2592' => 'sbo', 'Sc05g0009240' => 'sci', 'Sc12g0002300' => 'sci', 'Sc21g0000100' => 'sci', 'Sc21g0004720' => 'sci', 'Sed0002949' => 'sed', 'Sed0004114' => 'sed', 'Sed0004306' => 'sed', 'Sed0006172' => 'sed', 'Sed0008413' => 'sed', 'Sed0013809' => 'sed', 'Sed0019556' => 'sed', 'SEGI_03570' => 'sgi', 'SEGI_07859' => 'sgi', 'SEGI_15042' => 'sgi', 'SEGI_16263' => 'sgi', 'SEGI_16552' => 'sgi', 'SEGI_24331' => 'sgi', 'SEGI_27316' => 'sgi', 'SEGI_29521' => 'sgi', 'SEGI_41342' => 'sgi', 'SGA_v2.0_scaffold27G11617' => 'sas', 'SGA_v2.0_scaffold316G48428' => 'sas', 'SGA_v2.0_scaffold49G18261' => 'sas', 'SGA_v2.0_scaffold7G03831' => 'sas', 'SGA_v2.0_scaffold93G28359' => 'sas', 'SHI02210' => 'shi', 'SHI06028' => 'shi', 'SHI06321' => 'shi', 'SMO111G0012' => 'smo', 'SMO228G0080' => 'smo', 'SMO356G0756' => 'smo', 'Solyc02g080620.3' => 'sly', 'Solyc06g074530.1' => 'sly', 'Solyc11g066890.1' => 'sly', 'Solyc11g072520.3' => 'sly', 'Sopen02g025330' => 'spe', 'Sopen06g031000' => 'spe', 'Sopen09g008240' => 'spe', 'Sopen09g025210' => 'spe', 'Sopen11g026600' => 'spe', 'Sopen11g030170' => 'spe', 'Sp1g10420' => 'spa', 'Sp3g06570' => 'spa', 'Sp4g10660' => 'spa', 'Sp5g16460' => 'spa', 'Sp6g22710' => 'spa', 'TAR365G0112' => 'tar', 'TAR369G0717' => 'tar', 'TAR374G0976' => 'tar', 'TAR623G1128' => 'tar', 'TAR626G1937' => 'tar', 'TAR627G0123' => 'tar', 'TAR628G0305' => 'tar', 'TAR636G1176' => 'tar', 'TAR636G2442' => 'tar', 'THA.LOC104800556' => 'tha', 'THA.LOC104809501' => 'tha', 'THA.LOC104815126' => 'tha', 'THA.LOC104815732' => 'tha', 'THA.LOC104823528' => 'tha', 'Thecc.02G365600' => 'tca', 'Thecc.06G222300' => 'tca', 'Thecc.09G261800' => 'tca', 'Thecc.09G291400' => 'tca', 'Thhalv10003028m.g' => 'esa', 'Thhalv10007886m.g' => 'esa', 'Thhalv10016085m.g' => 'esa', 'Thhalv10016681m.g' => 'esa', 'Thhalv10020951m.g' => 'esa', 'TPR.G15598' => 'tpr', 'TPR.G29305' => 'tpr', 'TPR.G32395' => 'tpr', 'TPR.G36998' => 'tpr', 'TPR.G4227' => 'tpr', 'TWI18G1433' => 'twi', 'TWI31G0755' => 'twi', 'TWI38G0912' => 'twi', 'TWI75G1097' => 'twi', 'TWI75G1619' => 'twi', 'TWI79G1336' => 'twi', 'unitig_0.g943' => 'ugi', 'unitig_0.g944' => 'ugi', 'unitig_22.g6646' => 'ugi', 'unitig_37.g12681' => 'ugi', 'unitig_8.g3290' => 'ugi', 'vmacro03278' => 'vma', 'vmacro12197' => 'vma', 'vmacro14478' => 'vma', 'vmacro15787' => 'vma', 'vmacro15789' => 'vma', 'vmacro15790' => 'vma', 'vmacro15806' => 'vma', 'vmacro22907' => 'vma', 'vmacro22908' => 'vma', 'vmacro22909' => 'vma', 'vmacro23108' => 'vma', 'VMungo0540G0540' => 'vmu', 'VMungo0540G2468' => 'vmu', 'VMungo1080G0390' => 'vmu', 'VMungo1080G1165' => 'vmu', 'VMungo1127G0170' => 'vmu', 'VMungo1127G2099' => 'vmu', 'VMungo1215G3013' => 'vmu', 'Zm00001eb013110' => 'zma', 'Zm00001eb084260' => 'zma', 'Zm00001eb096110' => 'zma', 'Zm00001eb217510' => 'zma', 'Zm00001eb322550' => 'zma', 'Zm00001eb390770' => 'zma', 'Zm00001eb397170' => 'zma', 'Zm00001eb404610' => 'zma', 'Zm00001eb421790' => 'zma' ) $gf_id = 'HOM05D000911' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000911' ) $data_identifier = 'HOM05D000911' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 16, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 5, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 6, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 8, 'nnu' => (int) 16, 'oeu' => (int) 8, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 5, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 16, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421790' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000911', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27780' => 'bna', 'A03p35380' => 'bna', 'A04p21160' => 'bna', 'A05p40570' => 'bna', 'A06p26900' => 'bna', 'A08p33230' => 'bna', 'A09p65960' => 'bna', 'A10p18290' => 'bna', 'Aa31LG1G12990' => 'aar', 'Aa31LG1G2980' => 'aar', 'Aa31LG4G14320' => 'aar', 'Aa31LG7G11800' => 'aar', 'Aa31sc36G50' => 'aar', 'Aa31sc36G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3721' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5459' => 'aag', 'Actinidia03028' => 'ach', 'Actinidia03753' => 'ach', 'Actinidia04187' => 'ach', 'Actinidia05509' => 'ach', 'Actinidia24180' => 'ach', 'Actinidia26906' => 'ach', 'Actinidia37097' => 'ach', 'Actinidia38249' => 'ach', 'Ah.01g003470' => 'amhyb', 'Ah.01g004580' => 'amhyb', 'Ah.01g014850' => 'amhyb', 'Ah.01g016830' => 'amhyb', 'Ah.14g088000' => 'amhyb', 'AL1G22980' => 'aly', 'AL3G18990' => 'aly', 'AL4G22440' => 'aly', 'AL4G33180' => 'aly', 'AL5G22920' => 'aly', 'AL6G33660' => 'aly', 'AL8G20720' => 'aly', 'Aqoxy1G00935' => 'aox', 'Aqoxy1G02094' => 'aox', 'Aqoxy2G01239' => 'aox', 'Aqoxy4G01870' => 'aox', 'Aqoxy7G00450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.36ZVTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71EM27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5D6C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH3WRE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3NCM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RIM768' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YB5YRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z36GDV' => 'arhy', 'AT1G08250' => 'ath', 'AT1G11790' => 'ath', 'AT2G27820' => 'ath', 'AT3G07630' => 'ath', 'AT3G44720' => 'ath', 'AT5G22630' => 'ath', 'ATR0693G304' => 'atr', 'ATR0794G109' => 'atr', 'ATR0820G120' => 'atr', 'ATR1159G064' => 'atr', 'Atru.chr10.2239' => 'acertr', 'Atru.chr3.3371' => 'acertr', 'Atru.chr6.3202' => 'acertr', 'AUR62006499' => 'cqu', 'AUR62012718' => 'cqu', 'AUR62021938' => 'cqu', 'AUR62023932' => 'cqu', 'AUR62025034' => 'cqu', 'AUR62025035' => 'cqu', 'AUR62038307' => 'cqu', 'AUR62043466' => 'cqu', 'BcaB02g10748' => 'bca', 'BcaB03g13231' => 'bca', 'BcaB03g14689' => 'bca', 'BcaB05g22716' => 'bca', 'BcaB06g28172' => 'bca', 'BcaB08g36413' => 'bca', 'BcaC01g02186' => 'bca', 'BcaC01g04272' => 'bca', 'BcaC02g08080' => 'bca', 'BcaC02g08227' => 'bca', 'BcaC03g13901' => 'bca', 'BcaC04g19593' => 'bca', 'BcaC04g20874' => 'bca', 'BcaC05g29557' => 'bca', 'BcaC06g35505' => 'bca', 'BcaC07g41954' => 'bca', 'BcaC07g41955' => 'bca', 'BcaC07g41956' => 'bca', 'BcaC07g42519' => 'bca', 'BcaC07g42520' => 'bca', 'BcaC07g42523' => 'bca', 'BcaC07g42524' => 'bca', 'BcaC07g42525' => 'bca', 'BcaC08g47480' => 'bca', 'BcaC08g47481' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00530' => 'bna', 'BolC2t07178H' => 'bol', 'BolC3t16567H' => 'bol', 'BolC4t27234H' => 'bol', 'BolC5t29728H' => 'bol', 'BolC5t34622H' => 'bol', 'BolC6t40321H' => 'bol', 'BolC7t42028H' => 'bol', 'BolC8t49125H' => 'bol', 'BolC8t52538H' => 'bol', 'BolC8t52539H' => 'bol', 'BolC9t56681H' => 'bol', 'BolC9t58266H' => 'bol', 'BolSC21t60294H' => 'bol', 'BraA02t05670Z' => 'bra', 'BraA03t12716Z' => 'bra', 'BraA04t17685Z' => 'bra', 'BraA05t22788Z' => 'bra', 'BraA06t24032Z' => 'bra', 'BraA06t25625Z' => 'bra', 'BraA07t27930Z' => 'bra', 'BraA08t35242Z' => 'bra', 'BraA09t38609Z' => 'bra', 'BraA10t43905Z' => 'bra', 'C02p11060' => 'bna', 'C03p42990' => 'bna', 'C03p67310' => 'bna', 'C04p56990' => 'bna', 'C04p58660' => 'bna', 'C05p09890' => 'bna', 'C05p59680' => 'bna', 'C06p19830' => 'bna', 'C06p53040' => 'bna', 'C07p15230' => 'bna', 'C08p50070' => 'bna', 'C08p50090' => 'bna', 'C09p38330' => 'bna', 'C09p53940' => 'bna', 'CAN.G1014.1' => 'can', 'CAN.G644.30' => 'can', 'CAN.G84.47' => 'can', 'CAN.G919.8' => 'can', 'CANSAT54G0113' => 'cansat', 'CANSAT54G1286' => 'cansat', 'CANSAT64G1020' => 'cansat', 'CARHR008080' => 'chi', 'CARHR008090' => 'chi', 'CARHR012130' => 'chi', 'CARHR038390' => 'chi', 'CARHR082330' => 'chi', 'CARHR120520' => 'chi', 'CARHR151470' => 'chi', 'CARHR190950' => 'chi', 'Carub.0001s0760' => 'cru', 'Carub.0001s1146' => 'cru', 'Carub.0003s0721' => 'cru', 'Carub.0004s0858' => 'cru', 'Carub.0005s1040' => 'cru', 'Carub.0006s2035' => 'cru', 'Carub.0015s0005' => 'cru', 'Ca_01607_v3' => 'car', 'Ca_01677_v3' => 'car', 'Ca_06087_v3' => 'car', 'Ca_19238_v3' => 'car', 'Ca_19373_v3' => 'car', 'Ca_21079_v3' => 'car', 'CBR_g54016' => 'cbr', 'CBR_g54018' => 'cbr', 'CBR_g54020' => 'cbr', 'Cc01_g09780' => 'ccan', 'Cc01_g11680' => 'ccan', 'Cc02_g15610' => 'ccan', 'Cc05_g04350' => 'ccan', 'Cc09_g01580' => 'ccan', 'CDE01G0795' => 'cde', 'CDE02G2024' => 'cde', 'CDE02G2260' => 'cde', 'CDE02G4561' => 'cde', 'CDE05G2733' => 'cde', 'CDE05G3422' => 'cde', 'CDE06G2003' => 'cde', 'CDE08G0576' => 'cde', 'CDE09G0048' => 'cde', 'CDE11G0805' => 'cde', 'Cfa003644' => 'cfa', 'Cfa006290' => 'cfa', 'Cfa010080' => 'cfa', 'Cfa011376' => 'cfa', 'Cfa011576' => 'cfa', 'Cfa011577' => 'cfa', 'Cfa014389' => 'cfa', 'Ciclev10006044m.g' => 'ccl', 'Ciclev10006954m.g' => 'ccl', 'Ciclev10015131m.g' => 'ccl', 'Ciclev10015580m.g' => 'ccl', 'Ciclev10028359m.g' => 'ccl', 'Ciclev10028573m.g' => 'ccl', 'CiPaw.03G159300' => 'cil', 'CiPaw.04G115100' => 'cil', 'CiPaw.09G092800' => 'cil', 'CiPaw.10G071800' => 'cil', 'CiPaw.13G105800' => 'cil', 'CiPaw.13G141000' => 'cil', 'CiPaw.14G103400' => 'cil', 'ClCG01G012700' => 'cla', 'ClCG01G012720' => 'cla', 'ClCG01G021920' => 'cla', 'ClCG02G008870' => 'cla', 'ClCG02G020840' => 'cla', 'ClCG02G021930' => 'cla', 'COL.COLO4_19302' => 'col', 'COL.COLO4_25262' => 'col', 'COL.COLO4_31788' => 'col', 'Cpa.g.c34684' => 'cpa', 'Cpa.g.c36520.1' => 'cpa', 'Cpa.g.c45626' => 'cpa', 'Cpa.g.sc121.17' => 'cpa', 'Cpa.g.sc13.22' => 'cpa', 'Cpa.g.sc87.88' => 'cpa', 'Cre06.g261800' => 'cre', 'CsaV3_1G014500' => 'csa', 'CsaV3_1G014510' => 'csa', 'CsaV3_2G034880' => 'csa', 'CsaV3_6G014760' => 'csa', 'CsaV3_6G021500' => 'csa', 'CsaV3_6G048980' => 'csa', 'CSS0002511' => 'camsi', 'CSS0007556' => 'camsi', 'CSS0008532' => 'camsi', 'CSS0009709' => 'camsi', 'CSS0010486' => 'camsi', 'CSS0016768' => 'camsi', 'CSS0023512' => 'camsi', 'CSS0025341' => 'camsi', 'CSS0027999' => 'camsi', 'CSS0028944' => 'camsi', 'CSS0032292' => 'camsi', 'CSS0032464' => 'camsi', 'CSS0037153' => 'camsi', 'CSS0039256' => 'camsi', 'CSS0048392' => 'camsi', 'CSS0050458' => 'camsi', 'DCAR_004224' => 'dca', 'DCAR_006147' => 'dca', 'DCAR_006465' => 'dca', 'DCAR_008159' => 'dca', 'DCAR_012164' => 'dca', 'DCAR_019764' => 'dca', 'Dinv05418' => 'din', 'Dinv10839' => 'din', 'Dinv12521' => 'din', 'Dinv13900' => 'din', 'Dinv29426' => 'din', 'Duzib150G0263' => 'dzi', 'Duzib168G1178' => 'dzi', 'Duzib168G1924' => 'dzi', 'Duzib170G0299' => 'dzi', 'Duzib170G0813' => 'dzi', 'Duzib235G1128' => 'dzi', 'Duzib248G1060' => 'dzi', 'ECA232G1910' => 'eca', 'ECA233G4621' => 'eca', 'ECA238G1216' => 'eca', 'ECA238G1784' => 'eca', 'ECA248G1242' => 'eca', 'EL10Ac8g20071' => 'bvu', 'EL10Ac9g21086' => 'bvu', 'EL10Ac9g22407' => 'bvu', 'EL10Ac9g22412' => 'bvu', 'Eucgr.A01119' => 'egr', 'Eucgr.E04043' => 'egr', 'Eucgr.J00428' => 'egr', 'Eucgr.J00958' => 'egr', 'FAN11G3091' => 'fan', 'FAN11G3651' => 'fan', 'FAN16G2566' => 'fan', 'FAN21G3155' => 'fan', 'FAN21G3400' => 'fan', 'FAN21G3543' => 'fan', 'FAN25G0234' => 'fan', 'FAN25G1422' => 'fan', 'FAN25G3392' => 'fan', 'FvH4_3g01940' => 'fve', 'FvH4_3g29870' => 'fve', 'FvH4_3g33680' => 'fve', 'Glyma.09G004200' => 'gma', 'Glyma.11G151288' => 'gma', 'Glyma.11G189100' => 'gma', 'Glyma.12G072500' => 'gma', 'Glyma.12G085500' => 'gma', 'Glyma.12G181800' => 'gma', 'Glyma.12G193000' => 'gma', 'Glyma.13G309300' => 'gma', 'Glyma.13G319000' => 'gma', 'Glyma.17G012600' => 'gma', 'Gohir.A06G148600' => 'ghi', 'Gohir.A07G115800' => 'ghi', 'Gohir.A08G003600' => 'ghi', 'Gohir.A09G093300' => 'ghi', 'Gohir.A09G105400' => 'ghi', 'Gohir.A09G105500' => 'ghi', 'Gohir.D06G154600' => 'ghi', 'Gohir.D07G120200' => 'ghi', 'Gohir.D08G013900' => 'ghi', 'Gohir.D09G093100' => 'ghi', 'Gohir.D09G102200' => 'ghi', 'Gohir.D09G102300' => 'ghi', 'Gorai.001G129400' => 'gra', 'Gorai.004G008200' => 'gra', 'Gorai.006G109800' => 'gra', 'Gorai.006G119500' => 'gra', 'Gorai.006G121300' => 'gra', 'Gorai.010G180700' => 'gra', 'GSVIVG01012716001' => 'vvi', 'GSVIVG01025118001' => 'vvi', 'GSVIVG01030439001' => 'vvi', 'GSVIVG01031397001' => 'vvi', 'HanXRQChr01g0004201' => 'han', 'HanXRQChr02g0054941' => 'han', 'HanXRQChr05g0141811' => 'han', 'HanXRQChr07g0197751' => 'han', 'HanXRQChr11g0346691' => 'han', 'HanXRQChr13g0396971' => 'han', 'HanXRQChr14g0432951' => 'han', 'HanXRQChr14g0452001' => 'han', 'HanXRQChr15g0496681' => 'han', 'HanXRQChr17g0557491' => 'han', 'HanXRQChr17g0557501' => 'han', 'Haze_06809' => 'cav', 'Haze_12852' => 'cav', 'Haze_15850' => 'cav', 'Haze_23446' => 'cav', 'Haze_23942' => 'cav', 'Haze_23943' => 'cav', 'Hma1.2p1_0091F.1_g046450' => 'hma', 'Hma1.2p1_0128F.1_g059910' => 'hma', 'Hma1.2p1_0249F.1_g102260' => 'hma', 'Hma1.2p1_0453F.1_g156190' => 'hma', 'Hma1.2p1_0695F.1_g204380' => 'hma', 'Hma1.2p1_0749F.1_g212650' => 'hma', 'Hma1.2p1_2156F.1_g315420' => 'hma', 'Hma1.2p1_2686F.1_g326940' => 'hma', 'HPP92_006428' => 'vpl', 'HPP92_012069' => 'vpl', 'HPP92_014129' => 'vpl', 'HPP92_014133' => 'vpl', 'HPP92_017315' => 'vpl', 'HPP92_026445' => 'vpl', 'HPP92_026446' => 'vpl', 'Hund00774' => 'sun', 'Hund07682' => 'sun', 'Hund21413' => 'sun', 'Hund23462' => 'sun', 'Hund23463' => 'sun', 'Lalb_Chr03g0027911' => 'lal', 'Lalb_Chr13g0304271' => 'lal', 'Lalb_Chr19g0137471' => 'lal', 'Lalb_Chr22g0350651' => 'lal', 'Lalb_Chr24g0395151' => 'lal', 'Lj1A1231T40' => 'lonja', 'Lj1A221T48' => 'lonja', 'Lj1C924T12' => 'lonja', 'Lj2C993G6' => 'lonja', 'Lj3g0005790' => 'lja', 'Lj3g0015432' => 'lja', 'Lj3g0017722' => 'lja', 'Lj3g0018497' => 'lja', 'Lj4g0025071' => 'lja', 'Lsat_1_v5_gn_1_129680' => 'lsa', 'Lsat_1_v5_gn_2_25321' => 'lsa', 'Lsat_1_v5_gn_2_95461' => 'lsa', 'Lsat_1_v5_gn_4_159620' => 'lsa', 'Lsat_1_v5_gn_6_41301' => 'lsa', 'Lsat_1_v5_gn_6_74660' => 'lsa', 'Lsat_1_v5_gn_7_11520' => 'lsa', 'Lsat_1_v5_gn_9_67680' => 'lsa', 'Manes.04G008300' => 'mes', 'Manes.04G008400' => 'mes', 'Manes.04G026500' => 'mes', 'Manes.10G135300' => 'mes', 'Manes.11G157300' => 'mes', 'Manes.12G074000' => 'mes', 'Manes.16G006200' => 'mes', 'Manes.17G026400' => 'mes', 'Mapoly0024s0086' => 'mpo', 'Mapoly0024s0087' => 'mpo', 'Mapoly0071s0057' => 'mpo', 'Mapoly0204s0012' => 'mpo', 'MBI04_g37681_MAGBIO' => 'mbi', 'MBI05_g17779_MAGBIO' => 'mbi', 'MBI12_g31184_MAGBIO' => 'mbi', 'MBI17_g11083_MAGBIO' => 'mbi', 'MBI18_g03883_MAGBIO' => 'mbi', 'MBI18_g28940_MAGBIO' => 'mbi', 'MCO01G690' => 'mco', 'MD03G1109900' => 'mdo', 'MD03G1134800' => 'mdo', 'MD05G1348000' => 'mdo', 'MD10G1322400' => 'mdo', 'MD11G1123300' => 'mdo', 'MD11G1157600' => 'mdo', 'Medtr2g084875' => 'mtr', 'Medtr2g088130' => 'mtr', 'Medtr4g055310' => 'mtr', 'Medtr4g061070' => 'mtr', 'Medtr4g132250' => 'mtr', 'MELO3C004795.2' => 'cme', 'MELO3C004797.2' => 'cme', 'MELO3C007396.2' => 'cme', 'MELO3C019277.2' => 'cme', 'MELO3C021449.2' => 'cme', 'MELO3C025736.2' => 'cme', 'Migut.D02175' => 'egut', 'Migut.H01573' => 'egut', 'Migut.M01327' => 'egut', 'Migut.N02513' => 'egut', 'MSTRG.14638' => 'ama', 'MSTRG.18632' => 'ama', 'MSTRG.7203' => 'ama', 'Nitab4.5_0000533g0140' => 'nta', 'Nitab4.5_0000888g0150' => 'nta', 'Nitab4.5_0001453g0040' => 'nta', 'Nitab4.5_0002827g0090' => 'nta', 'Nitab4.5_0003082g0040' => 'nta', 'Nitab4.5_0007799g0040' => 'nta', 'Nitab4.5_0008983g0010' => 'nta', 'Nitab4.5_0009017g0020' => 'nta', 'Nn1g02132' => 'nnu', 'Nn1g03492' => 'nnu', 'Nn1g03493' => 'nnu', 'Nn1g03494' => 'nnu', 'Nn1g07164' => 'nnu', 'Nn1g07291' => 'nnu', 'Nn2g10655' => 'nnu', 'Nn2g11652' => 'nnu', 'Nn2g14008' => 'nnu', 'Nn3g17476' => 'nnu', 'Nn3g17477' => 'nnu', 'Nn4g22370' => 'nnu', 'Nn4g25255' => 'nnu', 'Nn5g27755' => 'nnu', 'Nn6g34260' => 'nnu', 'Nn6g35041' => 'nnu', 'Oeu005924.1' => 'oeu', 'Oeu008383.1' => 'oeu', 'Oeu014928.1' => 'oeu', 'Oeu019889.1' => 'oeu', 'Oeu022271.1' => 'oeu', 'Oeu025271.1' => 'oeu', 'Oeu036302.1' => 'oeu', 'Oeu044100.1' => 'oeu', 'Os01g0528300' => 'osa', 'Os03g0286200' => 'osa', 'Os04g0406600' => 'osa', 'Os07g0512000' => 'osa', 'Os07g0694600' => 'osa', 'Os08g0411000' => 'osa', 'Os09g0565700' => 'osa', 'Os09g0566050' => 'osa', 'Os10g0523700' => 'osa', 'Peaxi162Scf00002g00514' => 'pax', 'Peaxi162Scf00047g01817' => 'pax', 'Peaxi162Scf00114g00001' => 'pax', 'Peaxi162Scf00147g00613' => 'pax', 'Peaxi162Scf00389g00425' => 'pax', 'PGR042G1139' => 'pgr', 'PGR042G3273' => 'pgr', 'PGR102G2180' => 'pgr', 'PGR119G0234' => 'pgr', 'PGR119G0668' => 'pgr', 'PGSC0003DMG400007122' => 'stu', 'PGSC0003DMG400016478' => 'stu', 'PGSC0003DMG400025374' => 'stu', 'PGSC0003DMG400026536' => 'stu', 'Phvul.003G079600' => 'pvu', 'Phvul.005G115600' => 'pvu', 'Phvul.005G127100' => 'pvu', 'Phvul.006G149500' => 'pvu', 'Phvul.006G149600' => 'pvu', 'Phvul.011G071800' => 'pvu', 'Phvul.011G090400' => 'pvu', 'Potri.004G013400' => 'ptr', 'Potri.004G188100' => 'ptr', 'Potri.008G195500' => 'ptr', 'Potri.009G148800' => 'ptr', 'Potri.011G004700' => 'ptr', 'Pp3c17_22810' => 'ppa', 'Pp3c18_4480' => 'ppa', 'Pp3c19_13030' => 'ppa', 'Pp3c1_33620' => 'ppa', 'Pp3c2_9380' => 'ppa', 'PRCOL_00001023' => 'pco', 'Prupe.3G216300' => 'ppe', 'Prupe.4G019500' => 'ppe', 'Prupe.6G092500' => 'ppe', 'Prupe.6G119200' => 'ppe', 'Psat0s1945g0080' => 'psa', 'Psat0s4167g0040' => 'psa', 'Psat1g185800' => 'psa', 'Psat4g006440' => 'psa', 'Psat4g006480' => 'psa', 'Psat4g168120' => 'psa', 'Psat5g255680' => 'psa', 'Psat5g261760' => 'psa', 'Psat7g222120' => 'psa', 'PSO063G7252' => 'pso', 'PSO170G4778' => 'pso', 'PSO210G2249' => 'pso', 'PSO339G2411' => 'pso', 'PSO339G2457' => 'pso', 'PSO339G2854' => 'pso', 'PSO339G4288' => 'pso', 'PSO339G4615' => 'pso', 'PSO384G2796' => 'pso', 'PSO384G2940' => 'pso', 'PSO384G4227' => 'pso', 'PSO478G1425' => 'pso', 'PSO541G3863' => 'pso', 'PSO675G0507' => 'pso', 'PSO782G0338' => 'pso', 'PSO832G0644' => 'pso', 'QL01p013664' => 'qlo', 'QL01p036598' => 'qlo', 'QL05p072984' => 'qlo', 'QL08p005768' => 'qlo', 'QL08p032743' => 'qlo', 'QL93p0073_0439' => 'qlo', 'QL93p0073_0444' => 'qlo', 'RcHm_v2.0_Chr5g0002851' => 'rch', 'RcHm_v2.0_Chr5g0055201' => 'rch', 'RcHm_v2.0_Chr5g0061191' => 'rch', 'RcHm_v2.0_Chr7g0203231' => 'rch', 'Rhsim01G0208100' => 'rsi', 'Rhsim01G0208200' => 'rsi', 'Rhsim02G0106500' => 'rsi', 'Rhsim03G0107900' => 'rsi', 'Rhsim06G0163400' => 'rsi', 'Rhsim13G0105200' => 'rsi', 'Sabra04G0006300' => 'sbr', 'Sabra04G0127000' => 'sbr', 'Sabra08G0148700' => 'sbr', 'Sabra09G0117400' => 'sbr', 'SalBow1G3326' => 'sbo', 'SalBow3G3228' => 'sbo', 'SalBow6G1634' => 'sbo', 'SalBow6G3603' => 'sbo', 'SalBow6G5266' => 'sbo', 'SalBow7G2265' => 'sbo', 'SalBow8G0850' => 'sbo', 'SalBow8G2592' => 'sbo', 'Sc05g0009240' => 'sci', 'Sc12g0002300' => 'sci', 'Sc21g0000100' => 'sci', 'Sc21g0004720' => 'sci', 'Sed0002949' => 'sed', 'Sed0004114' => 'sed', 'Sed0004306' => 'sed', 'Sed0006172' => 'sed', 'Sed0008413' => 'sed', 'Sed0013809' => 'sed', 'Sed0019556' => 'sed', 'SEGI_03570' => 'sgi', 'SEGI_07859' => 'sgi', 'SEGI_15042' => 'sgi', 'SEGI_16263' => 'sgi', 'SEGI_16552' => 'sgi', 'SEGI_24331' => 'sgi', 'SEGI_27316' => 'sgi', 'SEGI_29521' => 'sgi', 'SEGI_41342' => 'sgi', 'SGA_v2.0_scaffold27G11617' => 'sas', 'SGA_v2.0_scaffold316G48428' => 'sas', 'SGA_v2.0_scaffold49G18261' => 'sas', 'SGA_v2.0_scaffold7G03831' => 'sas', 'SGA_v2.0_scaffold93G28359' => 'sas', 'SHI02210' => 'shi', 'SHI06028' => 'shi', 'SHI06321' => 'shi', 'SMO111G0012' => 'smo', 'SMO228G0080' => 'smo', 'SMO356G0756' => 'smo', 'Solyc02g080620.3' => 'sly', 'Solyc06g074530.1' => 'sly', 'Solyc11g066890.1' => 'sly', 'Solyc11g072520.3' => 'sly', 'Sopen02g025330' => 'spe', 'Sopen06g031000' => 'spe', 'Sopen09g008240' => 'spe', 'Sopen09g025210' => 'spe', 'Sopen11g026600' => 'spe', 'Sopen11g030170' => 'spe', 'Sp1g10420' => 'spa', 'Sp3g06570' => 'spa', 'Sp4g10660' => 'spa', 'Sp5g16460' => 'spa', 'Sp6g22710' => 'spa', 'TAR365G0112' => 'tar', 'TAR369G0717' => 'tar', 'TAR374G0976' => 'tar', 'TAR623G1128' => 'tar', 'TAR626G1937' => 'tar', 'TAR627G0123' => 'tar', 'TAR628G0305' => 'tar', 'TAR636G1176' => 'tar', 'TAR636G2442' => 'tar', 'THA.LOC104800556' => 'tha', 'THA.LOC104809501' => 'tha', 'THA.LOC104815126' => 'tha', 'THA.LOC104815732' => 'tha', 'THA.LOC104823528' => 'tha', 'Thecc.02G365600' => 'tca', 'Thecc.06G222300' => 'tca', 'Thecc.09G261800' => 'tca', 'Thecc.09G291400' => 'tca', 'Thhalv10003028m.g' => 'esa', 'Thhalv10007886m.g' => 'esa', 'Thhalv10016085m.g' => 'esa', 'Thhalv10016681m.g' => 'esa', 'Thhalv10020951m.g' => 'esa', 'TPR.G15598' => 'tpr', 'TPR.G29305' => 'tpr', 'TPR.G32395' => 'tpr', 'TPR.G36998' => 'tpr', 'TPR.G4227' => 'tpr', 'TWI18G1433' => 'twi', 'TWI31G0755' => 'twi', 'TWI38G0912' => 'twi', 'TWI75G1097' => 'twi', 'TWI75G1619' => 'twi', 'TWI79G1336' => 'twi', 'unitig_0.g943' => 'ugi', 'unitig_0.g944' => 'ugi', 'unitig_22.g6646' => 'ugi', 'unitig_37.g12681' => 'ugi', 'unitig_8.g3290' => 'ugi', 'vmacro03278' => 'vma', 'vmacro12197' => 'vma', 'vmacro14478' => 'vma', 'vmacro15787' => 'vma', 'vmacro15789' => 'vma', 'vmacro15790' => 'vma', 'vmacro15806' => 'vma', 'vmacro22907' => 'vma', 'vmacro22908' => 'vma', 'vmacro22909' => 'vma', 'vmacro23108' => 'vma', 'VMungo0540G0540' => 'vmu', 'VMungo0540G2468' => 'vmu', 'VMungo1080G0390' => 'vmu', 'VMungo1080G1165' => 'vmu', 'VMungo1127G0170' => 'vmu', 'VMungo1127G2099' => 'vmu', 'VMungo1215G3013' => 'vmu', 'Zm00001eb013110' => 'zma', 'Zm00001eb084260' => 'zma', 'Zm00001eb096110' => 'zma', 'Zm00001eb217510' => 'zma', 'Zm00001eb322550' => 'zma', 'Zm00001eb390770' => 'zma', 'Zm00001eb397170' => 'zma', 'Zm00001eb404610' => 'zma', 'Zm00001eb421790' => 'zma' ), 'gf_id' => 'HOM05D000911', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000911' ), 'data_identifier' => 'HOM05D000911', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000911', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27780' => 'bna', 'A03p35380' => 'bna', 'A04p21160' => 'bna', 'A05p40570' => 'bna', 'A06p26900' => 'bna', 'A08p33230' => 'bna', 'A09p65960' => 'bna', 'A10p18290' => 'bna', 'Aa31LG1G12990' => 'aar', 'Aa31LG1G2980' => 'aar', 'Aa31LG4G14320' => 'aar', 'Aa31LG7G11800' => 'aar', 'Aa31sc36G50' => 'aar', 'Aa31sc36G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3721' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5459' => 'aag', 'Actinidia03028' => 'ach', 'Actinidia03753' => 'ach', 'Actinidia04187' => 'ach', 'Actinidia05509' => 'ach', 'Actinidia24180' => 'ach', 'Actinidia26906' => 'ach', 'Actinidia37097' => 'ach', 'Actinidia38249' => 'ach', 'Ah.01g003470' => 'amhyb', 'Ah.01g004580' => 'amhyb', 'Ah.01g014850' => 'amhyb', 'Ah.01g016830' => 'amhyb', 'Ah.14g088000' => 'amhyb', 'AL1G22980' => 'aly', 'AL3G18990' => 'aly', 'AL4G22440' => 'aly', 'AL4G33180' => 'aly', 'AL5G22920' => 'aly', 'AL6G33660' => 'aly', 'AL8G20720' => 'aly', 'Aqoxy1G00935' => 'aox', 'Aqoxy1G02094' => 'aox', 'Aqoxy2G01239' => 'aox', 'Aqoxy4G01870' => 'aox', 'Aqoxy7G00450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.36ZVTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71EM27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5D6C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH3WRE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3NCM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RIM768' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YB5YRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z36GDV' => 'arhy', 'AT1G08250' => 'ath', 'AT1G11790' => 'ath', 'AT2G27820' => 'ath', 'AT3G07630' => 'ath', 'AT3G44720' => 'ath', 'AT5G22630' => 'ath', 'ATR0693G304' => 'atr', 'ATR0794G109' => 'atr', 'ATR0820G120' => 'atr', 'ATR1159G064' => 'atr', 'Atru.chr10.2239' => 'acertr', 'Atru.chr3.3371' => 'acertr', 'Atru.chr6.3202' => 'acertr', 'AUR62006499' => 'cqu', 'AUR62012718' => 'cqu', 'AUR62021938' => 'cqu', 'AUR62023932' => 'cqu', 'AUR62025034' => 'cqu', 'AUR62025035' => 'cqu', 'AUR62038307' => 'cqu', 'AUR62043466' => 'cqu', 'BcaB02g10748' => 'bca', 'BcaB03g13231' => 'bca', 'BcaB03g14689' => 'bca', 'BcaB05g22716' => 'bca', 'BcaB06g28172' => 'bca', 'BcaB08g36413' => 'bca', 'BcaC01g02186' => 'bca', 'BcaC01g04272' => 'bca', 'BcaC02g08080' => 'bca', 'BcaC02g08227' => 'bca', 'BcaC03g13901' => 'bca', 'BcaC04g19593' => 'bca', 'BcaC04g20874' => 'bca', 'BcaC05g29557' => 'bca', 'BcaC06g35505' => 'bca', 'BcaC07g41954' => 'bca', 'BcaC07g41955' => 'bca', 'BcaC07g41956' => 'bca', 'BcaC07g42519' => 'bca', 'BcaC07g42520' => 'bca', 'BcaC07g42523' => 'bca', 'BcaC07g42524' => 'bca', 'BcaC07g42525' => 'bca', 'BcaC08g47480' => 'bca', 'BcaC08g47481' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00530' => 'bna', 'BolC2t07178H' => 'bol', 'BolC3t16567H' => 'bol', 'BolC4t27234H' => 'bol', 'BolC5t29728H' => 'bol', 'BolC5t34622H' => 'bol', 'BolC6t40321H' => 'bol', 'BolC7t42028H' => 'bol', 'BolC8t49125H' => 'bol', 'BolC8t52538H' => 'bol', 'BolC8t52539H' => 'bol', 'BolC9t56681H' => 'bol', 'BolC9t58266H' => 'bol', 'BolSC21t60294H' => 'bol', 'BraA02t05670Z' => 'bra', 'BraA03t12716Z' => 'bra', 'BraA04t17685Z' => 'bra', 'BraA05t22788Z' => 'bra', 'BraA06t24032Z' => 'bra', 'BraA06t25625Z' => 'bra', 'BraA07t27930Z' => 'bra', 'BraA08t35242Z' => 'bra', 'BraA09t38609Z' => 'bra', 'BraA10t43905Z' => 'bra', 'C02p11060' => 'bna', 'C03p42990' => 'bna', 'C03p67310' => 'bna', 'C04p56990' => 'bna', 'C04p58660' => 'bna', 'C05p09890' => 'bna', 'C05p59680' => 'bna', 'C06p19830' => 'bna', 'C06p53040' => 'bna', 'C07p15230' => 'bna', 'C08p50070' => 'bna', 'C08p50090' => 'bna', 'C09p38330' => 'bna', 'C09p53940' => 'bna', 'CAN.G1014.1' => 'can', 'CAN.G644.30' => 'can', 'CAN.G84.47' => 'can', 'CAN.G919.8' => 'can', 'CANSAT54G0113' => 'cansat', 'CANSAT54G1286' => 'cansat', 'CANSAT64G1020' => 'cansat', 'CARHR008080' => 'chi', 'CARHR008090' => 'chi', 'CARHR012130' => 'chi', 'CARHR038390' => 'chi', 'CARHR082330' => 'chi', 'CARHR120520' => 'chi', 'CARHR151470' => 'chi', 'CARHR190950' => 'chi', 'Carub.0001s0760' => 'cru', 'Carub.0001s1146' => 'cru', 'Carub.0003s0721' => 'cru', 'Carub.0004s0858' => 'cru', 'Carub.0005s1040' => 'cru', 'Carub.0006s2035' => 'cru', 'Carub.0015s0005' => 'cru', 'Ca_01607_v3' => 'car', 'Ca_01677_v3' => 'car', 'Ca_06087_v3' => 'car', 'Ca_19238_v3' => 'car', 'Ca_19373_v3' => 'car', 'Ca_21079_v3' => 'car', 'CBR_g54016' => 'cbr', 'CBR_g54018' => 'cbr', 'CBR_g54020' => 'cbr', 'Cc01_g09780' => 'ccan', 'Cc01_g11680' => 'ccan', 'Cc02_g15610' => 'ccan', 'Cc05_g04350' => 'ccan', 'Cc09_g01580' => 'ccan', 'CDE01G0795' => 'cde', 'CDE02G2024' => 'cde', 'CDE02G2260' => 'cde', 'CDE02G4561' => 'cde', 'CDE05G2733' => 'cde', 'CDE05G3422' => 'cde', 'CDE06G2003' => 'cde', 'CDE08G0576' => 'cde', 'CDE09G0048' => 'cde', 'CDE11G0805' => 'cde', 'Cfa003644' => 'cfa', 'Cfa006290' => 'cfa', 'Cfa010080' => 'cfa', 'Cfa011376' => 'cfa', 'Cfa011576' => 'cfa', 'Cfa011577' => 'cfa', 'Cfa014389' => 'cfa', 'Ciclev10006044m.g' => 'ccl', 'Ciclev10006954m.g' => 'ccl', 'Ciclev10015131m.g' => 'ccl', 'Ciclev10015580m.g' => 'ccl', 'Ciclev10028359m.g' => 'ccl', 'Ciclev10028573m.g' => 'ccl', 'CiPaw.03G159300' => 'cil', 'CiPaw.04G115100' => 'cil', 'CiPaw.09G092800' => 'cil', 'CiPaw.10G071800' => 'cil', 'CiPaw.13G105800' => 'cil', 'CiPaw.13G141000' => 'cil', 'CiPaw.14G103400' => 'cil', 'ClCG01G012700' => 'cla', 'ClCG01G012720' => 'cla', 'ClCG01G021920' => 'cla', 'ClCG02G008870' => 'cla', 'ClCG02G020840' => 'cla', 'ClCG02G021930' => 'cla', 'COL.COLO4_19302' => 'col', 'COL.COLO4_25262' => 'col', 'COL.COLO4_31788' => 'col', 'Cpa.g.c34684' => 'cpa', 'Cpa.g.c36520.1' => 'cpa', 'Cpa.g.c45626' => 'cpa', 'Cpa.g.sc121.17' => 'cpa', 'Cpa.g.sc13.22' => 'cpa', 'Cpa.g.sc87.88' => 'cpa', 'Cre06.g261800' => 'cre', 'CsaV3_1G014500' => 'csa', 'CsaV3_1G014510' => 'csa', 'CsaV3_2G034880' => 'csa', 'CsaV3_6G014760' => 'csa', 'CsaV3_6G021500' => 'csa', 'CsaV3_6G048980' => 'csa', 'CSS0002511' => 'camsi', 'CSS0007556' => 'camsi', 'CSS0008532' => 'camsi', 'CSS0009709' => 'camsi', 'CSS0010486' => 'camsi', 'CSS0016768' => 'camsi', 'CSS0023512' => 'camsi', 'CSS0025341' => 'camsi', 'CSS0027999' => 'camsi', 'CSS0028944' => 'camsi', 'CSS0032292' => 'camsi', 'CSS0032464' => 'camsi', 'CSS0037153' => 'camsi', 'CSS0039256' => 'camsi', 'CSS0048392' => 'camsi', 'CSS0050458' => 'camsi', 'DCAR_004224' => 'dca', 'DCAR_006147' => 'dca', 'DCAR_006465' => 'dca', 'DCAR_008159' => 'dca', 'DCAR_012164' => 'dca', 'DCAR_019764' => 'dca', 'Dinv05418' => 'din', 'Dinv10839' => 'din', 'Dinv12521' => 'din', 'Dinv13900' => 'din', 'Dinv29426' => 'din', 'Duzib150G0263' => 'dzi', 'Duzib168G1178' => 'dzi', 'Duzib168G1924' => 'dzi', 'Duzib170G0299' => 'dzi', 'Duzib170G0813' => 'dzi', 'Duzib235G1128' => 'dzi', 'Duzib248G1060' => 'dzi', 'ECA232G1910' => 'eca', 'ECA233G4621' => 'eca', 'ECA238G1216' => 'eca', 'ECA238G1784' => 'eca', 'ECA248G1242' => 'eca', 'EL10Ac8g20071' => 'bvu', 'EL10Ac9g21086' => 'bvu', 'EL10Ac9g22407' => 'bvu', 'EL10Ac9g22412' => 'bvu', 'Eucgr.A01119' => 'egr', 'Eucgr.E04043' => 'egr', 'Eucgr.J00428' => 'egr', 'Eucgr.J00958' => 'egr', 'FAN11G3091' => 'fan', 'FAN11G3651' => 'fan', 'FAN16G2566' => 'fan', 'FAN21G3155' => 'fan', 'FAN21G3400' => 'fan', 'FAN21G3543' => 'fan', 'FAN25G0234' => 'fan', 'FAN25G1422' => 'fan', 'FAN25G3392' => 'fan', 'FvH4_3g01940' => 'fve', 'FvH4_3g29870' => 'fve', 'FvH4_3g33680' => 'fve', 'Glyma.09G004200' => 'gma', 'Glyma.11G151288' => 'gma', 'Glyma.11G189100' => 'gma', 'Glyma.12G072500' => 'gma', 'Glyma.12G085500' => 'gma', 'Glyma.12G181800' => 'gma', 'Glyma.12G193000' => 'gma', 'Glyma.13G309300' => 'gma', 'Glyma.13G319000' => 'gma', 'Glyma.17G012600' => 'gma', 'Gohir.A06G148600' => 'ghi', 'Gohir.A07G115800' => 'ghi', 'Gohir.A08G003600' => 'ghi', 'Gohir.A09G093300' => 'ghi', 'Gohir.A09G105400' => 'ghi', 'Gohir.A09G105500' => 'ghi', 'Gohir.D06G154600' => 'ghi', 'Gohir.D07G120200' => 'ghi', 'Gohir.D08G013900' => 'ghi', 'Gohir.D09G093100' => 'ghi', 'Gohir.D09G102200' => 'ghi', 'Gohir.D09G102300' => 'ghi', 'Gorai.001G129400' => 'gra', 'Gorai.004G008200' => 'gra', 'Gorai.006G109800' => 'gra', 'Gorai.006G119500' => 'gra', 'Gorai.006G121300' => 'gra', 'Gorai.010G180700' => 'gra', 'GSVIVG01012716001' => 'vvi', 'GSVIVG01025118001' => 'vvi', 'GSVIVG01030439001' => 'vvi', 'GSVIVG01031397001' => 'vvi', 'HanXRQChr01g0004201' => 'han', 'HanXRQChr02g0054941' => 'han', 'HanXRQChr05g0141811' => 'han', 'HanXRQChr07g0197751' => 'han', 'HanXRQChr11g0346691' => 'han', 'HanXRQChr13g0396971' => 'han', 'HanXRQChr14g0432951' => 'han', 'HanXRQChr14g0452001' => 'han', 'HanXRQChr15g0496681' => 'han', 'HanXRQChr17g0557491' => 'han', 'HanXRQChr17g0557501' => 'han', 'Haze_06809' => 'cav', 'Haze_12852' => 'cav', 'Haze_15850' => 'cav', 'Haze_23446' => 'cav', 'Haze_23942' => 'cav', 'Haze_23943' => 'cav', 'Hma1.2p1_0091F.1_g046450' => 'hma', 'Hma1.2p1_0128F.1_g059910' => 'hma', 'Hma1.2p1_0249F.1_g102260' => 'hma', 'Hma1.2p1_0453F.1_g156190' => 'hma', 'Hma1.2p1_0695F.1_g204380' => 'hma', 'Hma1.2p1_0749F.1_g212650' => 'hma', 'Hma1.2p1_2156F.1_g315420' => 'hma', 'Hma1.2p1_2686F.1_g326940' => 'hma', 'HPP92_006428' => 'vpl', 'HPP92_012069' => 'vpl', 'HPP92_014129' => 'vpl', 'HPP92_014133' => 'vpl', 'HPP92_017315' => 'vpl', 'HPP92_026445' => 'vpl', 'HPP92_026446' => 'vpl', 'Hund00774' => 'sun', 'Hund07682' => 'sun', 'Hund21413' => 'sun', 'Hund23462' => 'sun', 'Hund23463' => 'sun', 'Lalb_Chr03g0027911' => 'lal', 'Lalb_Chr13g0304271' => 'lal', 'Lalb_Chr19g0137471' => 'lal', 'Lalb_Chr22g0350651' => 'lal', 'Lalb_Chr24g0395151' => 'lal', 'Lj1A1231T40' => 'lonja', 'Lj1A221T48' => 'lonja', 'Lj1C924T12' => 'lonja', 'Lj2C993G6' => 'lonja', 'Lj3g0005790' => 'lja', 'Lj3g0015432' => 'lja', 'Lj3g0017722' => 'lja', 'Lj3g0018497' => 'lja', 'Lj4g0025071' => 'lja', 'Lsat_1_v5_gn_1_129680' => 'lsa', 'Lsat_1_v5_gn_2_25321' => 'lsa', 'Lsat_1_v5_gn_2_95461' => 'lsa', 'Lsat_1_v5_gn_4_159620' => 'lsa', 'Lsat_1_v5_gn_6_41301' => 'lsa', 'Lsat_1_v5_gn_6_74660' => 'lsa', 'Lsat_1_v5_gn_7_11520' => 'lsa', 'Lsat_1_v5_gn_9_67680' => 'lsa', 'Manes.04G008300' => 'mes', 'Manes.04G008400' => 'mes', 'Manes.04G026500' => 'mes', 'Manes.10G135300' => 'mes', 'Manes.11G157300' => 'mes', 'Manes.12G074000' => 'mes', 'Manes.16G006200' => 'mes', 'Manes.17G026400' => 'mes', 'Mapoly0024s0086' => 'mpo', 'Mapoly0024s0087' => 'mpo', 'Mapoly0071s0057' => 'mpo', 'Mapoly0204s0012' => 'mpo', 'MBI04_g37681_MAGBIO' => 'mbi', 'MBI05_g17779_MAGBIO' => 'mbi', 'MBI12_g31184_MAGBIO' => 'mbi', 'MBI17_g11083_MAGBIO' => 'mbi', 'MBI18_g03883_MAGBIO' => 'mbi', 'MBI18_g28940_MAGBIO' => 'mbi', 'MCO01G690' => 'mco', 'MD03G1109900' => 'mdo', 'MD03G1134800' => 'mdo', 'MD05G1348000' => 'mdo', 'MD10G1322400' => 'mdo', 'MD11G1123300' => 'mdo', 'MD11G1157600' => 'mdo', 'Medtr2g084875' => 'mtr', 'Medtr2g088130' => 'mtr', 'Medtr4g055310' => 'mtr', 'Medtr4g061070' => 'mtr', 'Medtr4g132250' => 'mtr', 'MELO3C004795.2' => 'cme', 'MELO3C004797.2' => 'cme', 'MELO3C007396.2' => 'cme', 'MELO3C019277.2' => 'cme', 'MELO3C021449.2' => 'cme', 'MELO3C025736.2' => 'cme', 'Migut.D02175' => 'egut', 'Migut.H01573' => 'egut', 'Migut.M01327' => 'egut', 'Migut.N02513' => 'egut', 'MSTRG.14638' => 'ama', 'MSTRG.18632' => 'ama', 'MSTRG.7203' => 'ama', 'Nitab4.5_0000533g0140' => 'nta', 'Nitab4.5_0000888g0150' => 'nta', 'Nitab4.5_0001453g0040' => 'nta', 'Nitab4.5_0002827g0090' => 'nta', 'Nitab4.5_0003082g0040' => 'nta', 'Nitab4.5_0007799g0040' => 'nta', 'Nitab4.5_0008983g0010' => 'nta', 'Nitab4.5_0009017g0020' => 'nta', 'Nn1g02132' => 'nnu', 'Nn1g03492' => 'nnu', 'Nn1g03493' => 'nnu', 'Nn1g03494' => 'nnu', 'Nn1g07164' => 'nnu', 'Nn1g07291' => 'nnu', 'Nn2g10655' => 'nnu', 'Nn2g11652' => 'nnu', 'Nn2g14008' => 'nnu', 'Nn3g17476' => 'nnu', 'Nn3g17477' => 'nnu', 'Nn4g22370' => 'nnu', 'Nn4g25255' => 'nnu', 'Nn5g27755' => 'nnu', 'Nn6g34260' => 'nnu', 'Nn6g35041' => 'nnu', 'Oeu005924.1' => 'oeu', 'Oeu008383.1' => 'oeu', 'Oeu014928.1' => 'oeu', 'Oeu019889.1' => 'oeu', 'Oeu022271.1' => 'oeu', 'Oeu025271.1' => 'oeu', 'Oeu036302.1' => 'oeu', 'Oeu044100.1' => 'oeu', 'Os01g0528300' => 'osa', 'Os03g0286200' => 'osa', 'Os04g0406600' => 'osa', 'Os07g0512000' => 'osa', 'Os07g0694600' => 'osa', 'Os08g0411000' => 'osa', 'Os09g0565700' => 'osa', 'Os09g0566050' => 'osa', 'Os10g0523700' => 'osa', 'Peaxi162Scf00002g00514' => 'pax', 'Peaxi162Scf00047g01817' => 'pax', 'Peaxi162Scf00114g00001' => 'pax', 'Peaxi162Scf00147g00613' => 'pax', 'Peaxi162Scf00389g00425' => 'pax', 'PGR042G1139' => 'pgr', 'PGR042G3273' => 'pgr', 'PGR102G2180' => 'pgr', 'PGR119G0234' => 'pgr', 'PGR119G0668' => 'pgr', 'PGSC0003DMG400007122' => 'stu', 'PGSC0003DMG400016478' => 'stu', 'PGSC0003DMG400025374' => 'stu', 'PGSC0003DMG400026536' => 'stu', 'Phvul.003G079600' => 'pvu', 'Phvul.005G115600' => 'pvu', 'Phvul.005G127100' => 'pvu', 'Phvul.006G149500' => 'pvu', 'Phvul.006G149600' => 'pvu', 'Phvul.011G071800' => 'pvu', 'Phvul.011G090400' => 'pvu', 'Potri.004G013400' => 'ptr', 'Potri.004G188100' => 'ptr', 'Potri.008G195500' => 'ptr', 'Potri.009G148800' => 'ptr', 'Potri.011G004700' => 'ptr', 'Pp3c17_22810' => 'ppa', 'Pp3c18_4480' => 'ppa', 'Pp3c19_13030' => 'ppa', 'Pp3c1_33620' => 'ppa', 'Pp3c2_9380' => 'ppa', 'PRCOL_00001023' => 'pco', 'Prupe.3G216300' => 'ppe', 'Prupe.4G019500' => 'ppe', 'Prupe.6G092500' => 'ppe', 'Prupe.6G119200' => 'ppe', 'Psat0s1945g0080' => 'psa', 'Psat0s4167g0040' => 'psa', 'Psat1g185800' => 'psa', 'Psat4g006440' => 'psa', 'Psat4g006480' => 'psa', 'Psat4g168120' => 'psa', 'Psat5g255680' => 'psa', 'Psat5g261760' => 'psa', 'Psat7g222120' => 'psa', 'PSO063G7252' => 'pso', 'PSO170G4778' => 'pso', 'PSO210G2249' => 'pso', 'PSO339G2411' => 'pso', 'PSO339G2457' => 'pso', 'PSO339G2854' => 'pso', 'PSO339G4288' => 'pso', 'PSO339G4615' => 'pso', 'PSO384G2796' => 'pso', 'PSO384G2940' => 'pso', 'PSO384G4227' => 'pso', 'PSO478G1425' => 'pso', 'PSO541G3863' => 'pso', 'PSO675G0507' => 'pso', 'PSO782G0338' => 'pso', 'PSO832G0644' => 'pso', 'QL01p013664' => 'qlo', 'QL01p036598' => 'qlo', 'QL05p072984' => 'qlo', 'QL08p005768' => 'qlo', 'QL08p032743' => 'qlo', 'QL93p0073_0439' => 'qlo', 'QL93p0073_0444' => 'qlo', 'RcHm_v2.0_Chr5g0002851' => 'rch', 'RcHm_v2.0_Chr5g0055201' => 'rch', 'RcHm_v2.0_Chr5g0061191' => 'rch', 'RcHm_v2.0_Chr7g0203231' => 'rch', 'Rhsim01G0208100' => 'rsi', 'Rhsim01G0208200' => 'rsi', 'Rhsim02G0106500' => 'rsi', 'Rhsim03G0107900' => 'rsi', 'Rhsim06G0163400' => 'rsi', 'Rhsim13G0105200' => 'rsi', 'Sabra04G0006300' => 'sbr', 'Sabra04G0127000' => 'sbr', 'Sabra08G0148700' => 'sbr', 'Sabra09G0117400' => 'sbr', 'SalBow1G3326' => 'sbo', 'SalBow3G3228' => 'sbo', 'SalBow6G1634' => 'sbo', 'SalBow6G3603' => 'sbo', 'SalBow6G5266' => 'sbo', 'SalBow7G2265' => 'sbo', 'SalBow8G0850' => 'sbo', 'SalBow8G2592' => 'sbo', 'Sc05g0009240' => 'sci', 'Sc12g0002300' => 'sci', 'Sc21g0000100' => 'sci', 'Sc21g0004720' => 'sci', 'Sed0002949' => 'sed', 'Sed0004114' => 'sed', 'Sed0004306' => 'sed', 'Sed0006172' => 'sed', 'Sed0008413' => 'sed', 'Sed0013809' => 'sed', 'Sed0019556' => 'sed', 'SEGI_03570' => 'sgi', 'SEGI_07859' => 'sgi', 'SEGI_15042' => 'sgi', 'SEGI_16263' => 'sgi', 'SEGI_16552' => 'sgi', 'SEGI_24331' => 'sgi', 'SEGI_27316' => 'sgi', 'SEGI_29521' => 'sgi', 'SEGI_41342' => 'sgi', 'SGA_v2.0_scaffold27G11617' => 'sas', 'SGA_v2.0_scaffold316G48428' => 'sas', 'SGA_v2.0_scaffold49G18261' => 'sas', 'SGA_v2.0_scaffold7G03831' => 'sas', 'SGA_v2.0_scaffold93G28359' => 'sas', 'SHI02210' => 'shi', 'SHI06028' => 'shi', 'SHI06321' => 'shi', 'SMO111G0012' => 'smo', 'SMO228G0080' => 'smo', 'SMO356G0756' => 'smo', 'Solyc02g080620.3' => 'sly', 'Solyc06g074530.1' => 'sly', 'Solyc11g066890.1' => 'sly', 'Solyc11g072520.3' => 'sly', 'Sopen02g025330' => 'spe', 'Sopen06g031000' => 'spe', 'Sopen09g008240' => 'spe', 'Sopen09g025210' => 'spe', 'Sopen11g026600' => 'spe', 'Sopen11g030170' => 'spe', 'Sp1g10420' => 'spa', 'Sp3g06570' => 'spa', 'Sp4g10660' => 'spa', 'Sp5g16460' => 'spa', 'Sp6g22710' => 'spa', 'TAR365G0112' => 'tar', 'TAR369G0717' => 'tar', 'TAR374G0976' => 'tar', 'TAR623G1128' => 'tar', 'TAR626G1937' => 'tar', 'TAR627G0123' => 'tar', 'TAR628G0305' => 'tar', 'TAR636G1176' => 'tar', 'TAR636G2442' => 'tar', 'THA.LOC104800556' => 'tha', 'THA.LOC104809501' => 'tha', 'THA.LOC104815126' => 'tha', 'THA.LOC104815732' => 'tha', 'THA.LOC104823528' => 'tha', 'Thecc.02G365600' => 'tca', 'Thecc.06G222300' => 'tca', 'Thecc.09G261800' => 'tca', 'Thecc.09G291400' => 'tca', 'Thhalv10003028m.g' => 'esa', 'Thhalv10007886m.g' => 'esa', 'Thhalv10016085m.g' => 'esa', 'Thhalv10016681m.g' => 'esa', 'Thhalv10020951m.g' => 'esa', 'TPR.G15598' => 'tpr', 'TPR.G29305' => 'tpr', 'TPR.G32395' => 'tpr', 'TPR.G36998' => 'tpr', 'TPR.G4227' => 'tpr', 'TWI18G1433' => 'twi', 'TWI31G0755' => 'twi', 'TWI38G0912' => 'twi', 'TWI75G1097' => 'twi', 'TWI75G1619' => 'twi', 'TWI79G1336' => 'twi', 'unitig_0.g943' => 'ugi', 'unitig_0.g944' => 'ugi', 'unitig_22.g6646' => 'ugi', 'unitig_37.g12681' => 'ugi', 'unitig_8.g3290' => 'ugi', 'vmacro03278' => 'vma', 'vmacro12197' => 'vma', 'vmacro14478' => 'vma', 'vmacro15787' => 'vma', 'vmacro15789' => 'vma', 'vmacro15790' => 'vma', 'vmacro15806' => 'vma', 'vmacro22907' => 'vma', 'vmacro22908' => 'vma', 'vmacro22909' => 'vma', 'vmacro23108' => 'vma', 'VMungo0540G0540' => 'vmu', 'VMungo0540G2468' => 'vmu', 'VMungo1080G0390' => 'vmu', 'VMungo1080G1165' => 'vmu', 'VMungo1127G0170' => 'vmu', 'VMungo1127G2099' => 'vmu', 'VMungo1215G3013' => 'vmu', 'Zm00001eb013110' => 'zma', 'Zm00001eb084260' => 'zma', 'Zm00001eb096110' => 'zma', 'Zm00001eb217510' => 'zma', 'Zm00001eb322550' => 'zma', 'Zm00001eb390770' => 'zma', 'Zm00001eb397170' => 'zma', 'Zm00001eb404610' => 'zma', 'Zm00001eb421790' => 'zma' ) $gf_id = 'HOM05D000911' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000911' ) $data_identifier = 'HOM05D000911' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 16, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 5, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 6, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 8, 'nnu' => (int) 16, 'oeu' => (int) 8, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 5, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 16, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421790' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000911', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27780' => 'bna', 'A03p35380' => 'bna', 'A04p21160' => 'bna', 'A05p40570' => 'bna', 'A06p26900' => 'bna', 'A08p33230' => 'bna', 'A09p65960' => 'bna', 'A10p18290' => 'bna', 'Aa31LG1G12990' => 'aar', 'Aa31LG1G2980' => 'aar', 'Aa31LG4G14320' => 'aar', 'Aa31LG7G11800' => 'aar', 'Aa31sc36G50' => 'aar', 'Aa31sc36G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3721' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5459' => 'aag', 'Actinidia03028' => 'ach', 'Actinidia03753' => 'ach', 'Actinidia04187' => 'ach', 'Actinidia05509' => 'ach', 'Actinidia24180' => 'ach', 'Actinidia26906' => 'ach', 'Actinidia37097' => 'ach', 'Actinidia38249' => 'ach', 'Ah.01g003470' => 'amhyb', 'Ah.01g004580' => 'amhyb', 'Ah.01g014850' => 'amhyb', 'Ah.01g016830' => 'amhyb', 'Ah.14g088000' => 'amhyb', 'AL1G22980' => 'aly', 'AL3G18990' => 'aly', 'AL4G22440' => 'aly', 'AL4G33180' => 'aly', 'AL5G22920' => 'aly', 'AL6G33660' => 'aly', 'AL8G20720' => 'aly', 'Aqoxy1G00935' => 'aox', 'Aqoxy1G02094' => 'aox', 'Aqoxy2G01239' => 'aox', 'Aqoxy4G01870' => 'aox', 'Aqoxy7G00450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.36ZVTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71EM27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5D6C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH3WRE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3NCM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RIM768' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YB5YRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z36GDV' => 'arhy', 'AT1G08250' => 'ath', 'AT1G11790' => 'ath', 'AT2G27820' => 'ath', 'AT3G07630' => 'ath', 'AT3G44720' => 'ath', 'AT5G22630' => 'ath', 'ATR0693G304' => 'atr', 'ATR0794G109' => 'atr', 'ATR0820G120' => 'atr', 'ATR1159G064' => 'atr', 'Atru.chr10.2239' => 'acertr', 'Atru.chr3.3371' => 'acertr', 'Atru.chr6.3202' => 'acertr', 'AUR62006499' => 'cqu', 'AUR62012718' => 'cqu', 'AUR62021938' => 'cqu', 'AUR62023932' => 'cqu', 'AUR62025034' => 'cqu', 'AUR62025035' => 'cqu', 'AUR62038307' => 'cqu', 'AUR62043466' => 'cqu', 'BcaB02g10748' => 'bca', 'BcaB03g13231' => 'bca', 'BcaB03g14689' => 'bca', 'BcaB05g22716' => 'bca', 'BcaB06g28172' => 'bca', 'BcaB08g36413' => 'bca', 'BcaC01g02186' => 'bca', 'BcaC01g04272' => 'bca', 'BcaC02g08080' => 'bca', 'BcaC02g08227' => 'bca', 'BcaC03g13901' => 'bca', 'BcaC04g19593' => 'bca', 'BcaC04g20874' => 'bca', 'BcaC05g29557' => 'bca', 'BcaC06g35505' => 'bca', 'BcaC07g41954' => 'bca', 'BcaC07g41955' => 'bca', 'BcaC07g41956' => 'bca', 'BcaC07g42519' => 'bca', 'BcaC07g42520' => 'bca', 'BcaC07g42523' => 'bca', 'BcaC07g42524' => 'bca', 'BcaC07g42525' => 'bca', 'BcaC08g47480' => 'bca', 'BcaC08g47481' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00530' => 'bna', 'BolC2t07178H' => 'bol', 'BolC3t16567H' => 'bol', 'BolC4t27234H' => 'bol', 'BolC5t29728H' => 'bol', 'BolC5t34622H' => 'bol', 'BolC6t40321H' => 'bol', 'BolC7t42028H' => 'bol', 'BolC8t49125H' => 'bol', 'BolC8t52538H' => 'bol', 'BolC8t52539H' => 'bol', 'BolC9t56681H' => 'bol', 'BolC9t58266H' => 'bol', 'BolSC21t60294H' => 'bol', 'BraA02t05670Z' => 'bra', 'BraA03t12716Z' => 'bra', 'BraA04t17685Z' => 'bra', 'BraA05t22788Z' => 'bra', 'BraA06t24032Z' => 'bra', 'BraA06t25625Z' => 'bra', 'BraA07t27930Z' => 'bra', 'BraA08t35242Z' => 'bra', 'BraA09t38609Z' => 'bra', 'BraA10t43905Z' => 'bra', 'C02p11060' => 'bna', 'C03p42990' => 'bna', 'C03p67310' => 'bna', 'C04p56990' => 'bna', 'C04p58660' => 'bna', 'C05p09890' => 'bna', 'C05p59680' => 'bna', 'C06p19830' => 'bna', 'C06p53040' => 'bna', 'C07p15230' => 'bna', 'C08p50070' => 'bna', 'C08p50090' => 'bna', 'C09p38330' => 'bna', 'C09p53940' => 'bna', 'CAN.G1014.1' => 'can', 'CAN.G644.30' => 'can', 'CAN.G84.47' => 'can', 'CAN.G919.8' => 'can', 'CANSAT54G0113' => 'cansat', 'CANSAT54G1286' => 'cansat', 'CANSAT64G1020' => 'cansat', 'CARHR008080' => 'chi', 'CARHR008090' => 'chi', 'CARHR012130' => 'chi', 'CARHR038390' => 'chi', 'CARHR082330' => 'chi', 'CARHR120520' => 'chi', 'CARHR151470' => 'chi', 'CARHR190950' => 'chi', 'Carub.0001s0760' => 'cru', 'Carub.0001s1146' => 'cru', 'Carub.0003s0721' => 'cru', 'Carub.0004s0858' => 'cru', 'Carub.0005s1040' => 'cru', 'Carub.0006s2035' => 'cru', 'Carub.0015s0005' => 'cru', 'Ca_01607_v3' => 'car', 'Ca_01677_v3' => 'car', 'Ca_06087_v3' => 'car', 'Ca_19238_v3' => 'car', 'Ca_19373_v3' => 'car', 'Ca_21079_v3' => 'car', 'CBR_g54016' => 'cbr', 'CBR_g54018' => 'cbr', 'CBR_g54020' => 'cbr', 'Cc01_g09780' => 'ccan', 'Cc01_g11680' => 'ccan', 'Cc02_g15610' => 'ccan', 'Cc05_g04350' => 'ccan', 'Cc09_g01580' => 'ccan', 'CDE01G0795' => 'cde', 'CDE02G2024' => 'cde', 'CDE02G2260' => 'cde', 'CDE02G4561' => 'cde', 'CDE05G2733' => 'cde', 'CDE05G3422' => 'cde', 'CDE06G2003' => 'cde', 'CDE08G0576' => 'cde', 'CDE09G0048' => 'cde', 'CDE11G0805' => 'cde', 'Cfa003644' => 'cfa', 'Cfa006290' => 'cfa', 'Cfa010080' => 'cfa', 'Cfa011376' => 'cfa', 'Cfa011576' => 'cfa', 'Cfa011577' => 'cfa', 'Cfa014389' => 'cfa', 'Ciclev10006044m.g' => 'ccl', 'Ciclev10006954m.g' => 'ccl', 'Ciclev10015131m.g' => 'ccl', 'Ciclev10015580m.g' => 'ccl', 'Ciclev10028359m.g' => 'ccl', 'Ciclev10028573m.g' => 'ccl', 'CiPaw.03G159300' => 'cil', 'CiPaw.04G115100' => 'cil', 'CiPaw.09G092800' => 'cil', 'CiPaw.10G071800' => 'cil', 'CiPaw.13G105800' => 'cil', 'CiPaw.13G141000' => 'cil', 'CiPaw.14G103400' => 'cil', 'ClCG01G012700' => 'cla', 'ClCG01G012720' => 'cla', 'ClCG01G021920' => 'cla', 'ClCG02G008870' => 'cla', 'ClCG02G020840' => 'cla', 'ClCG02G021930' => 'cla', 'COL.COLO4_19302' => 'col', 'COL.COLO4_25262' => 'col', 'COL.COLO4_31788' => 'col', 'Cpa.g.c34684' => 'cpa', 'Cpa.g.c36520.1' => 'cpa', 'Cpa.g.c45626' => 'cpa', 'Cpa.g.sc121.17' => 'cpa', 'Cpa.g.sc13.22' => 'cpa', 'Cpa.g.sc87.88' => 'cpa', 'Cre06.g261800' => 'cre', 'CsaV3_1G014500' => 'csa', 'CsaV3_1G014510' => 'csa', 'CsaV3_2G034880' => 'csa', 'CsaV3_6G014760' => 'csa', 'CsaV3_6G021500' => 'csa', 'CsaV3_6G048980' => 'csa', 'CSS0002511' => 'camsi', 'CSS0007556' => 'camsi', 'CSS0008532' => 'camsi', 'CSS0009709' => 'camsi', 'CSS0010486' => 'camsi', 'CSS0016768' => 'camsi', 'CSS0023512' => 'camsi', 'CSS0025341' => 'camsi', 'CSS0027999' => 'camsi', 'CSS0028944' => 'camsi', 'CSS0032292' => 'camsi', 'CSS0032464' => 'camsi', 'CSS0037153' => 'camsi', 'CSS0039256' => 'camsi', 'CSS0048392' => 'camsi', 'CSS0050458' => 'camsi', 'DCAR_004224' => 'dca', 'DCAR_006147' => 'dca', 'DCAR_006465' => 'dca', 'DCAR_008159' => 'dca', 'DCAR_012164' => 'dca', 'DCAR_019764' => 'dca', 'Dinv05418' => 'din', 'Dinv10839' => 'din', 'Dinv12521' => 'din', 'Dinv13900' => 'din', 'Dinv29426' => 'din', 'Duzib150G0263' => 'dzi', 'Duzib168G1178' => 'dzi', 'Duzib168G1924' => 'dzi', 'Duzib170G0299' => 'dzi', 'Duzib170G0813' => 'dzi', 'Duzib235G1128' => 'dzi', 'Duzib248G1060' => 'dzi', 'ECA232G1910' => 'eca', 'ECA233G4621' => 'eca', 'ECA238G1216' => 'eca', 'ECA238G1784' => 'eca', 'ECA248G1242' => 'eca', 'EL10Ac8g20071' => 'bvu', 'EL10Ac9g21086' => 'bvu', 'EL10Ac9g22407' => 'bvu', 'EL10Ac9g22412' => 'bvu', 'Eucgr.A01119' => 'egr', 'Eucgr.E04043' => 'egr', 'Eucgr.J00428' => 'egr', 'Eucgr.J00958' => 'egr', 'FAN11G3091' => 'fan', 'FAN11G3651' => 'fan', 'FAN16G2566' => 'fan', 'FAN21G3155' => 'fan', 'FAN21G3400' => 'fan', 'FAN21G3543' => 'fan', 'FAN25G0234' => 'fan', 'FAN25G1422' => 'fan', 'FAN25G3392' => 'fan', 'FvH4_3g01940' => 'fve', 'FvH4_3g29870' => 'fve', 'FvH4_3g33680' => 'fve', 'Glyma.09G004200' => 'gma', 'Glyma.11G151288' => 'gma', 'Glyma.11G189100' => 'gma', 'Glyma.12G072500' => 'gma', 'Glyma.12G085500' => 'gma', 'Glyma.12G181800' => 'gma', 'Glyma.12G193000' => 'gma', 'Glyma.13G309300' => 'gma', 'Glyma.13G319000' => 'gma', 'Glyma.17G012600' => 'gma', 'Gohir.A06G148600' => 'ghi', 'Gohir.A07G115800' => 'ghi', 'Gohir.A08G003600' => 'ghi', 'Gohir.A09G093300' => 'ghi', 'Gohir.A09G105400' => 'ghi', 'Gohir.A09G105500' => 'ghi', 'Gohir.D06G154600' => 'ghi', 'Gohir.D07G120200' => 'ghi', 'Gohir.D08G013900' => 'ghi', 'Gohir.D09G093100' => 'ghi', 'Gohir.D09G102200' => 'ghi', 'Gohir.D09G102300' => 'ghi', 'Gorai.001G129400' => 'gra', 'Gorai.004G008200' => 'gra', 'Gorai.006G109800' => 'gra', 'Gorai.006G119500' => 'gra', 'Gorai.006G121300' => 'gra', 'Gorai.010G180700' => 'gra', 'GSVIVG01012716001' => 'vvi', 'GSVIVG01025118001' => 'vvi', 'GSVIVG01030439001' => 'vvi', 'GSVIVG01031397001' => 'vvi', 'HanXRQChr01g0004201' => 'han', 'HanXRQChr02g0054941' => 'han', 'HanXRQChr05g0141811' => 'han', 'HanXRQChr07g0197751' => 'han', 'HanXRQChr11g0346691' => 'han', 'HanXRQChr13g0396971' => 'han', 'HanXRQChr14g0432951' => 'han', 'HanXRQChr14g0452001' => 'han', 'HanXRQChr15g0496681' => 'han', 'HanXRQChr17g0557491' => 'han', 'HanXRQChr17g0557501' => 'han', 'Haze_06809' => 'cav', 'Haze_12852' => 'cav', 'Haze_15850' => 'cav', 'Haze_23446' => 'cav', 'Haze_23942' => 'cav', 'Haze_23943' => 'cav', 'Hma1.2p1_0091F.1_g046450' => 'hma', 'Hma1.2p1_0128F.1_g059910' => 'hma', 'Hma1.2p1_0249F.1_g102260' => 'hma', 'Hma1.2p1_0453F.1_g156190' => 'hma', 'Hma1.2p1_0695F.1_g204380' => 'hma', 'Hma1.2p1_0749F.1_g212650' => 'hma', 'Hma1.2p1_2156F.1_g315420' => 'hma', 'Hma1.2p1_2686F.1_g326940' => 'hma', 'HPP92_006428' => 'vpl', 'HPP92_012069' => 'vpl', 'HPP92_014129' => 'vpl', 'HPP92_014133' => 'vpl', 'HPP92_017315' => 'vpl', 'HPP92_026445' => 'vpl', 'HPP92_026446' => 'vpl', 'Hund00774' => 'sun', 'Hund07682' => 'sun', 'Hund21413' => 'sun', 'Hund23462' => 'sun', 'Hund23463' => 'sun', 'Lalb_Chr03g0027911' => 'lal', 'Lalb_Chr13g0304271' => 'lal', 'Lalb_Chr19g0137471' => 'lal', 'Lalb_Chr22g0350651' => 'lal', 'Lalb_Chr24g0395151' => 'lal', 'Lj1A1231T40' => 'lonja', 'Lj1A221T48' => 'lonja', 'Lj1C924T12' => 'lonja', 'Lj2C993G6' => 'lonja', 'Lj3g0005790' => 'lja', 'Lj3g0015432' => 'lja', 'Lj3g0017722' => 'lja', 'Lj3g0018497' => 'lja', 'Lj4g0025071' => 'lja', 'Lsat_1_v5_gn_1_129680' => 'lsa', 'Lsat_1_v5_gn_2_25321' => 'lsa', 'Lsat_1_v5_gn_2_95461' => 'lsa', 'Lsat_1_v5_gn_4_159620' => 'lsa', 'Lsat_1_v5_gn_6_41301' => 'lsa', 'Lsat_1_v5_gn_6_74660' => 'lsa', 'Lsat_1_v5_gn_7_11520' => 'lsa', 'Lsat_1_v5_gn_9_67680' => 'lsa', 'Manes.04G008300' => 'mes', 'Manes.04G008400' => 'mes', 'Manes.04G026500' => 'mes', 'Manes.10G135300' => 'mes', 'Manes.11G157300' => 'mes', 'Manes.12G074000' => 'mes', 'Manes.16G006200' => 'mes', 'Manes.17G026400' => 'mes', 'Mapoly0024s0086' => 'mpo', 'Mapoly0024s0087' => 'mpo', 'Mapoly0071s0057' => 'mpo', 'Mapoly0204s0012' => 'mpo', 'MBI04_g37681_MAGBIO' => 'mbi', 'MBI05_g17779_MAGBIO' => 'mbi', 'MBI12_g31184_MAGBIO' => 'mbi', 'MBI17_g11083_MAGBIO' => 'mbi', 'MBI18_g03883_MAGBIO' => 'mbi', 'MBI18_g28940_MAGBIO' => 'mbi', 'MCO01G690' => 'mco', 'MD03G1109900' => 'mdo', 'MD03G1134800' => 'mdo', 'MD05G1348000' => 'mdo', 'MD10G1322400' => 'mdo', 'MD11G1123300' => 'mdo', 'MD11G1157600' => 'mdo', 'Medtr2g084875' => 'mtr', 'Medtr2g088130' => 'mtr', 'Medtr4g055310' => 'mtr', 'Medtr4g061070' => 'mtr', 'Medtr4g132250' => 'mtr', 'MELO3C004795.2' => 'cme', 'MELO3C004797.2' => 'cme', 'MELO3C007396.2' => 'cme', 'MELO3C019277.2' => 'cme', 'MELO3C021449.2' => 'cme', 'MELO3C025736.2' => 'cme', 'Migut.D02175' => 'egut', 'Migut.H01573' => 'egut', 'Migut.M01327' => 'egut', 'Migut.N02513' => 'egut', 'MSTRG.14638' => 'ama', 'MSTRG.18632' => 'ama', 'MSTRG.7203' => 'ama', 'Nitab4.5_0000533g0140' => 'nta', 'Nitab4.5_0000888g0150' => 'nta', 'Nitab4.5_0001453g0040' => 'nta', 'Nitab4.5_0002827g0090' => 'nta', 'Nitab4.5_0003082g0040' => 'nta', 'Nitab4.5_0007799g0040' => 'nta', 'Nitab4.5_0008983g0010' => 'nta', 'Nitab4.5_0009017g0020' => 'nta', 'Nn1g02132' => 'nnu', 'Nn1g03492' => 'nnu', 'Nn1g03493' => 'nnu', 'Nn1g03494' => 'nnu', 'Nn1g07164' => 'nnu', 'Nn1g07291' => 'nnu', 'Nn2g10655' => 'nnu', 'Nn2g11652' => 'nnu', 'Nn2g14008' => 'nnu', 'Nn3g17476' => 'nnu', 'Nn3g17477' => 'nnu', 'Nn4g22370' => 'nnu', 'Nn4g25255' => 'nnu', 'Nn5g27755' => 'nnu', 'Nn6g34260' => 'nnu', 'Nn6g35041' => 'nnu', 'Oeu005924.1' => 'oeu', 'Oeu008383.1' => 'oeu', 'Oeu014928.1' => 'oeu', 'Oeu019889.1' => 'oeu', 'Oeu022271.1' => 'oeu', 'Oeu025271.1' => 'oeu', 'Oeu036302.1' => 'oeu', 'Oeu044100.1' => 'oeu', 'Os01g0528300' => 'osa', 'Os03g0286200' => 'osa', 'Os04g0406600' => 'osa', 'Os07g0512000' => 'osa', 'Os07g0694600' => 'osa', 'Os08g0411000' => 'osa', 'Os09g0565700' => 'osa', 'Os09g0566050' => 'osa', 'Os10g0523700' => 'osa', 'Peaxi162Scf00002g00514' => 'pax', 'Peaxi162Scf00047g01817' => 'pax', 'Peaxi162Scf00114g00001' => 'pax', 'Peaxi162Scf00147g00613' => 'pax', 'Peaxi162Scf00389g00425' => 'pax', 'PGR042G1139' => 'pgr', 'PGR042G3273' => 'pgr', 'PGR102G2180' => 'pgr', 'PGR119G0234' => 'pgr', 'PGR119G0668' => 'pgr', 'PGSC0003DMG400007122' => 'stu', 'PGSC0003DMG400016478' => 'stu', 'PGSC0003DMG400025374' => 'stu', 'PGSC0003DMG400026536' => 'stu', 'Phvul.003G079600' => 'pvu', 'Phvul.005G115600' => 'pvu', 'Phvul.005G127100' => 'pvu', 'Phvul.006G149500' => 'pvu', 'Phvul.006G149600' => 'pvu', 'Phvul.011G071800' => 'pvu', 'Phvul.011G090400' => 'pvu', 'Potri.004G013400' => 'ptr', 'Potri.004G188100' => 'ptr', 'Potri.008G195500' => 'ptr', 'Potri.009G148800' => 'ptr', 'Potri.011G004700' => 'ptr', 'Pp3c17_22810' => 'ppa', 'Pp3c18_4480' => 'ppa', 'Pp3c19_13030' => 'ppa', 'Pp3c1_33620' => 'ppa', 'Pp3c2_9380' => 'ppa', 'PRCOL_00001023' => 'pco', 'Prupe.3G216300' => 'ppe', 'Prupe.4G019500' => 'ppe', 'Prupe.6G092500' => 'ppe', 'Prupe.6G119200' => 'ppe', 'Psat0s1945g0080' => 'psa', 'Psat0s4167g0040' => 'psa', 'Psat1g185800' => 'psa', 'Psat4g006440' => 'psa', 'Psat4g006480' => 'psa', 'Psat4g168120' => 'psa', 'Psat5g255680' => 'psa', 'Psat5g261760' => 'psa', 'Psat7g222120' => 'psa', 'PSO063G7252' => 'pso', 'PSO170G4778' => 'pso', 'PSO210G2249' => 'pso', 'PSO339G2411' => 'pso', 'PSO339G2457' => 'pso', 'PSO339G2854' => 'pso', 'PSO339G4288' => 'pso', 'PSO339G4615' => 'pso', 'PSO384G2796' => 'pso', 'PSO384G2940' => 'pso', 'PSO384G4227' => 'pso', 'PSO478G1425' => 'pso', 'PSO541G3863' => 'pso', 'PSO675G0507' => 'pso', 'PSO782G0338' => 'pso', 'PSO832G0644' => 'pso', 'QL01p013664' => 'qlo', 'QL01p036598' => 'qlo', 'QL05p072984' => 'qlo', 'QL08p005768' => 'qlo', 'QL08p032743' => 'qlo', 'QL93p0073_0439' => 'qlo', 'QL93p0073_0444' => 'qlo', 'RcHm_v2.0_Chr5g0002851' => 'rch', 'RcHm_v2.0_Chr5g0055201' => 'rch', 'RcHm_v2.0_Chr5g0061191' => 'rch', 'RcHm_v2.0_Chr7g0203231' => 'rch', 'Rhsim01G0208100' => 'rsi', 'Rhsim01G0208200' => 'rsi', 'Rhsim02G0106500' => 'rsi', 'Rhsim03G0107900' => 'rsi', 'Rhsim06G0163400' => 'rsi', 'Rhsim13G0105200' => 'rsi', 'Sabra04G0006300' => 'sbr', 'Sabra04G0127000' => 'sbr', 'Sabra08G0148700' => 'sbr', 'Sabra09G0117400' => 'sbr', 'SalBow1G3326' => 'sbo', 'SalBow3G3228' => 'sbo', 'SalBow6G1634' => 'sbo', 'SalBow6G3603' => 'sbo', 'SalBow6G5266' => 'sbo', 'SalBow7G2265' => 'sbo', 'SalBow8G0850' => 'sbo', 'SalBow8G2592' => 'sbo', 'Sc05g0009240' => 'sci', 'Sc12g0002300' => 'sci', 'Sc21g0000100' => 'sci', 'Sc21g0004720' => 'sci', 'Sed0002949' => 'sed', 'Sed0004114' => 'sed', 'Sed0004306' => 'sed', 'Sed0006172' => 'sed', 'Sed0008413' => 'sed', 'Sed0013809' => 'sed', 'Sed0019556' => 'sed', 'SEGI_03570' => 'sgi', 'SEGI_07859' => 'sgi', 'SEGI_15042' => 'sgi', 'SEGI_16263' => 'sgi', 'SEGI_16552' => 'sgi', 'SEGI_24331' => 'sgi', 'SEGI_27316' => 'sgi', 'SEGI_29521' => 'sgi', 'SEGI_41342' => 'sgi', 'SGA_v2.0_scaffold27G11617' => 'sas', 'SGA_v2.0_scaffold316G48428' => 'sas', 'SGA_v2.0_scaffold49G18261' => 'sas', 'SGA_v2.0_scaffold7G03831' => 'sas', 'SGA_v2.0_scaffold93G28359' => 'sas', 'SHI02210' => 'shi', 'SHI06028' => 'shi', 'SHI06321' => 'shi', 'SMO111G0012' => 'smo', 'SMO228G0080' => 'smo', 'SMO356G0756' => 'smo', 'Solyc02g080620.3' => 'sly', 'Solyc06g074530.1' => 'sly', 'Solyc11g066890.1' => 'sly', 'Solyc11g072520.3' => 'sly', 'Sopen02g025330' => 'spe', 'Sopen06g031000' => 'spe', 'Sopen09g008240' => 'spe', 'Sopen09g025210' => 'spe', 'Sopen11g026600' => 'spe', 'Sopen11g030170' => 'spe', 'Sp1g10420' => 'spa', 'Sp3g06570' => 'spa', 'Sp4g10660' => 'spa', 'Sp5g16460' => 'spa', 'Sp6g22710' => 'spa', 'TAR365G0112' => 'tar', 'TAR369G0717' => 'tar', 'TAR374G0976' => 'tar', 'TAR623G1128' => 'tar', 'TAR626G1937' => 'tar', 'TAR627G0123' => 'tar', 'TAR628G0305' => 'tar', 'TAR636G1176' => 'tar', 'TAR636G2442' => 'tar', 'THA.LOC104800556' => 'tha', 'THA.LOC104809501' => 'tha', 'THA.LOC104815126' => 'tha', 'THA.LOC104815732' => 'tha', 'THA.LOC104823528' => 'tha', 'Thecc.02G365600' => 'tca', 'Thecc.06G222300' => 'tca', 'Thecc.09G261800' => 'tca', 'Thecc.09G291400' => 'tca', 'Thhalv10003028m.g' => 'esa', 'Thhalv10007886m.g' => 'esa', 'Thhalv10016085m.g' => 'esa', 'Thhalv10016681m.g' => 'esa', 'Thhalv10020951m.g' => 'esa', 'TPR.G15598' => 'tpr', 'TPR.G29305' => 'tpr', 'TPR.G32395' => 'tpr', 'TPR.G36998' => 'tpr', 'TPR.G4227' => 'tpr', 'TWI18G1433' => 'twi', 'TWI31G0755' => 'twi', 'TWI38G0912' => 'twi', 'TWI75G1097' => 'twi', 'TWI75G1619' => 'twi', 'TWI79G1336' => 'twi', 'unitig_0.g943' => 'ugi', 'unitig_0.g944' => 'ugi', 'unitig_22.g6646' => 'ugi', 'unitig_37.g12681' => 'ugi', 'unitig_8.g3290' => 'ugi', 'vmacro03278' => 'vma', 'vmacro12197' => 'vma', 'vmacro14478' => 'vma', 'vmacro15787' => 'vma', 'vmacro15789' => 'vma', 'vmacro15790' => 'vma', 'vmacro15806' => 'vma', 'vmacro22907' => 'vma', 'vmacro22908' => 'vma', 'vmacro22909' => 'vma', 'vmacro23108' => 'vma', 'VMungo0540G0540' => 'vmu', 'VMungo0540G2468' => 'vmu', 'VMungo1080G0390' => 'vmu', 'VMungo1080G1165' => 'vmu', 'VMungo1127G0170' => 'vmu', 'VMungo1127G2099' => 'vmu', 'VMungo1215G3013' => 'vmu', 'Zm00001eb013110' => 'zma', 'Zm00001eb084260' => 'zma', 'Zm00001eb096110' => 'zma', 'Zm00001eb217510' => 'zma', 'Zm00001eb322550' => 'zma', 'Zm00001eb390770' => 'zma', 'Zm00001eb397170' => 'zma', 'Zm00001eb404610' => 'zma', 'Zm00001eb421790' => 'zma' ), 'gf_id' => 'HOM05D000911', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000911' ), 'data_identifier' => 'HOM05D000911', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000911', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27780' => 'bna', 'A03p35380' => 'bna', 'A04p21160' => 'bna', 'A05p40570' => 'bna', 'A06p26900' => 'bna', 'A08p33230' => 'bna', 'A09p65960' => 'bna', 'A10p18290' => 'bna', 'Aa31LG1G12990' => 'aar', 'Aa31LG1G2980' => 'aar', 'Aa31LG4G14320' => 'aar', 'Aa31LG7G11800' => 'aar', 'Aa31sc36G50' => 'aar', 'Aa31sc36G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3721' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5459' => 'aag', 'Actinidia03028' => 'ach', 'Actinidia03753' => 'ach', 'Actinidia04187' => 'ach', 'Actinidia05509' => 'ach', 'Actinidia24180' => 'ach', 'Actinidia26906' => 'ach', 'Actinidia37097' => 'ach', 'Actinidia38249' => 'ach', 'Ah.01g003470' => 'amhyb', 'Ah.01g004580' => 'amhyb', 'Ah.01g014850' => 'amhyb', 'Ah.01g016830' => 'amhyb', 'Ah.14g088000' => 'amhyb', 'AL1G22980' => 'aly', 'AL3G18990' => 'aly', 'AL4G22440' => 'aly', 'AL4G33180' => 'aly', 'AL5G22920' => 'aly', 'AL6G33660' => 'aly', 'AL8G20720' => 'aly', 'Aqoxy1G00935' => 'aox', 'Aqoxy1G02094' => 'aox', 'Aqoxy2G01239' => 'aox', 'Aqoxy4G01870' => 'aox', 'Aqoxy7G00450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.36ZVTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71EM27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5D6C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH3WRE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3NCM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RIM768' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YB5YRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z36GDV' => 'arhy', 'AT1G08250' => 'ath', 'AT1G11790' => 'ath', 'AT2G27820' => 'ath', 'AT3G07630' => 'ath', 'AT3G44720' => 'ath', 'AT5G22630' => 'ath', 'ATR0693G304' => 'atr', 'ATR0794G109' => 'atr', 'ATR0820G120' => 'atr', 'ATR1159G064' => 'atr', 'Atru.chr10.2239' => 'acertr', 'Atru.chr3.3371' => 'acertr', 'Atru.chr6.3202' => 'acertr', 'AUR62006499' => 'cqu', 'AUR62012718' => 'cqu', 'AUR62021938' => 'cqu', 'AUR62023932' => 'cqu', 'AUR62025034' => 'cqu', 'AUR62025035' => 'cqu', 'AUR62038307' => 'cqu', 'AUR62043466' => 'cqu', 'BcaB02g10748' => 'bca', 'BcaB03g13231' => 'bca', 'BcaB03g14689' => 'bca', 'BcaB05g22716' => 'bca', 'BcaB06g28172' => 'bca', 'BcaB08g36413' => 'bca', 'BcaC01g02186' => 'bca', 'BcaC01g04272' => 'bca', 'BcaC02g08080' => 'bca', 'BcaC02g08227' => 'bca', 'BcaC03g13901' => 'bca', 'BcaC04g19593' => 'bca', 'BcaC04g20874' => 'bca', 'BcaC05g29557' => 'bca', 'BcaC06g35505' => 'bca', 'BcaC07g41954' => 'bca', 'BcaC07g41955' => 'bca', 'BcaC07g41956' => 'bca', 'BcaC07g42519' => 'bca', 'BcaC07g42520' => 'bca', 'BcaC07g42523' => 'bca', 'BcaC07g42524' => 'bca', 'BcaC07g42525' => 'bca', 'BcaC08g47480' => 'bca', 'BcaC08g47481' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00530' => 'bna', 'BolC2t07178H' => 'bol', 'BolC3t16567H' => 'bol', 'BolC4t27234H' => 'bol', 'BolC5t29728H' => 'bol', 'BolC5t34622H' => 'bol', 'BolC6t40321H' => 'bol', 'BolC7t42028H' => 'bol', 'BolC8t49125H' => 'bol', 'BolC8t52538H' => 'bol', 'BolC8t52539H' => 'bol', 'BolC9t56681H' => 'bol', 'BolC9t58266H' => 'bol', 'BolSC21t60294H' => 'bol', 'BraA02t05670Z' => 'bra', 'BraA03t12716Z' => 'bra', 'BraA04t17685Z' => 'bra', 'BraA05t22788Z' => 'bra', 'BraA06t24032Z' => 'bra', 'BraA06t25625Z' => 'bra', 'BraA07t27930Z' => 'bra', 'BraA08t35242Z' => 'bra', 'BraA09t38609Z' => 'bra', 'BraA10t43905Z' => 'bra', 'C02p11060' => 'bna', 'C03p42990' => 'bna', 'C03p67310' => 'bna', 'C04p56990' => 'bna', 'C04p58660' => 'bna', 'C05p09890' => 'bna', 'C05p59680' => 'bna', 'C06p19830' => 'bna', 'C06p53040' => 'bna', 'C07p15230' => 'bna', 'C08p50070' => 'bna', 'C08p50090' => 'bna', 'C09p38330' => 'bna', 'C09p53940' => 'bna', 'CAN.G1014.1' => 'can', 'CAN.G644.30' => 'can', 'CAN.G84.47' => 'can', 'CAN.G919.8' => 'can', 'CANSAT54G0113' => 'cansat', 'CANSAT54G1286' => 'cansat', 'CANSAT64G1020' => 'cansat', 'CARHR008080' => 'chi', 'CARHR008090' => 'chi', 'CARHR012130' => 'chi', 'CARHR038390' => 'chi', 'CARHR082330' => 'chi', 'CARHR120520' => 'chi', 'CARHR151470' => 'chi', 'CARHR190950' => 'chi', 'Carub.0001s0760' => 'cru', 'Carub.0001s1146' => 'cru', 'Carub.0003s0721' => 'cru', 'Carub.0004s0858' => 'cru', 'Carub.0005s1040' => 'cru', 'Carub.0006s2035' => 'cru', 'Carub.0015s0005' => 'cru', 'Ca_01607_v3' => 'car', 'Ca_01677_v3' => 'car', 'Ca_06087_v3' => 'car', 'Ca_19238_v3' => 'car', 'Ca_19373_v3' => 'car', 'Ca_21079_v3' => 'car', 'CBR_g54016' => 'cbr', 'CBR_g54018' => 'cbr', 'CBR_g54020' => 'cbr', 'Cc01_g09780' => 'ccan', 'Cc01_g11680' => 'ccan', 'Cc02_g15610' => 'ccan', 'Cc05_g04350' => 'ccan', 'Cc09_g01580' => 'ccan', 'CDE01G0795' => 'cde', 'CDE02G2024' => 'cde', 'CDE02G2260' => 'cde', 'CDE02G4561' => 'cde', 'CDE05G2733' => 'cde', 'CDE05G3422' => 'cde', 'CDE06G2003' => 'cde', 'CDE08G0576' => 'cde', 'CDE09G0048' => 'cde', 'CDE11G0805' => 'cde', 'Cfa003644' => 'cfa', 'Cfa006290' => 'cfa', 'Cfa010080' => 'cfa', 'Cfa011376' => 'cfa', 'Cfa011576' => 'cfa', 'Cfa011577' => 'cfa', 'Cfa014389' => 'cfa', 'Ciclev10006044m.g' => 'ccl', 'Ciclev10006954m.g' => 'ccl', 'Ciclev10015131m.g' => 'ccl', 'Ciclev10015580m.g' => 'ccl', 'Ciclev10028359m.g' => 'ccl', 'Ciclev10028573m.g' => 'ccl', 'CiPaw.03G159300' => 'cil', 'CiPaw.04G115100' => 'cil', 'CiPaw.09G092800' => 'cil', 'CiPaw.10G071800' => 'cil', 'CiPaw.13G105800' => 'cil', 'CiPaw.13G141000' => 'cil', 'CiPaw.14G103400' => 'cil', 'ClCG01G012700' => 'cla', 'ClCG01G012720' => 'cla', 'ClCG01G021920' => 'cla', 'ClCG02G008870' => 'cla', 'ClCG02G020840' => 'cla', 'ClCG02G021930' => 'cla', 'COL.COLO4_19302' => 'col', 'COL.COLO4_25262' => 'col', 'COL.COLO4_31788' => 'col', 'Cpa.g.c34684' => 'cpa', 'Cpa.g.c36520.1' => 'cpa', 'Cpa.g.c45626' => 'cpa', 'Cpa.g.sc121.17' => 'cpa', 'Cpa.g.sc13.22' => 'cpa', 'Cpa.g.sc87.88' => 'cpa', 'Cre06.g261800' => 'cre', 'CsaV3_1G014500' => 'csa', 'CsaV3_1G014510' => 'csa', 'CsaV3_2G034880' => 'csa', 'CsaV3_6G014760' => 'csa', 'CsaV3_6G021500' => 'csa', 'CsaV3_6G048980' => 'csa', 'CSS0002511' => 'camsi', 'CSS0007556' => 'camsi', 'CSS0008532' => 'camsi', 'CSS0009709' => 'camsi', 'CSS0010486' => 'camsi', 'CSS0016768' => 'camsi', 'CSS0023512' => 'camsi', 'CSS0025341' => 'camsi', 'CSS0027999' => 'camsi', 'CSS0028944' => 'camsi', 'CSS0032292' => 'camsi', 'CSS0032464' => 'camsi', 'CSS0037153' => 'camsi', 'CSS0039256' => 'camsi', 'CSS0048392' => 'camsi', 'CSS0050458' => 'camsi', 'DCAR_004224' => 'dca', 'DCAR_006147' => 'dca', 'DCAR_006465' => 'dca', 'DCAR_008159' => 'dca', 'DCAR_012164' => 'dca', 'DCAR_019764' => 'dca', 'Dinv05418' => 'din', 'Dinv10839' => 'din', 'Dinv12521' => 'din', 'Dinv13900' => 'din', 'Dinv29426' => 'din', 'Duzib150G0263' => 'dzi', 'Duzib168G1178' => 'dzi', 'Duzib168G1924' => 'dzi', 'Duzib170G0299' => 'dzi', 'Duzib170G0813' => 'dzi', 'Duzib235G1128' => 'dzi', 'Duzib248G1060' => 'dzi', 'ECA232G1910' => 'eca', 'ECA233G4621' => 'eca', 'ECA238G1216' => 'eca', 'ECA238G1784' => 'eca', 'ECA248G1242' => 'eca', 'EL10Ac8g20071' => 'bvu', 'EL10Ac9g21086' => 'bvu', 'EL10Ac9g22407' => 'bvu', 'EL10Ac9g22412' => 'bvu', 'Eucgr.A01119' => 'egr', 'Eucgr.E04043' => 'egr', 'Eucgr.J00428' => 'egr', 'Eucgr.J00958' => 'egr', 'FAN11G3091' => 'fan', 'FAN11G3651' => 'fan', 'FAN16G2566' => 'fan', 'FAN21G3155' => 'fan', 'FAN21G3400' => 'fan', 'FAN21G3543' => 'fan', 'FAN25G0234' => 'fan', 'FAN25G1422' => 'fan', 'FAN25G3392' => 'fan', 'FvH4_3g01940' => 'fve', 'FvH4_3g29870' => 'fve', 'FvH4_3g33680' => 'fve', 'Glyma.09G004200' => 'gma', 'Glyma.11G151288' => 'gma', 'Glyma.11G189100' => 'gma', 'Glyma.12G072500' => 'gma', 'Glyma.12G085500' => 'gma', 'Glyma.12G181800' => 'gma', 'Glyma.12G193000' => 'gma', 'Glyma.13G309300' => 'gma', 'Glyma.13G319000' => 'gma', 'Glyma.17G012600' => 'gma', 'Gohir.A06G148600' => 'ghi', 'Gohir.A07G115800' => 'ghi', 'Gohir.A08G003600' => 'ghi', 'Gohir.A09G093300' => 'ghi', 'Gohir.A09G105400' => 'ghi', 'Gohir.A09G105500' => 'ghi', 'Gohir.D06G154600' => 'ghi', 'Gohir.D07G120200' => 'ghi', 'Gohir.D08G013900' => 'ghi', 'Gohir.D09G093100' => 'ghi', 'Gohir.D09G102200' => 'ghi', 'Gohir.D09G102300' => 'ghi', 'Gorai.001G129400' => 'gra', 'Gorai.004G008200' => 'gra', 'Gorai.006G109800' => 'gra', 'Gorai.006G119500' => 'gra', 'Gorai.006G121300' => 'gra', 'Gorai.010G180700' => 'gra', 'GSVIVG01012716001' => 'vvi', 'GSVIVG01025118001' => 'vvi', 'GSVIVG01030439001' => 'vvi', 'GSVIVG01031397001' => 'vvi', 'HanXRQChr01g0004201' => 'han', 'HanXRQChr02g0054941' => 'han', 'HanXRQChr05g0141811' => 'han', 'HanXRQChr07g0197751' => 'han', 'HanXRQChr11g0346691' => 'han', 'HanXRQChr13g0396971' => 'han', 'HanXRQChr14g0432951' => 'han', 'HanXRQChr14g0452001' => 'han', 'HanXRQChr15g0496681' => 'han', 'HanXRQChr17g0557491' => 'han', 'HanXRQChr17g0557501' => 'han', 'Haze_06809' => 'cav', 'Haze_12852' => 'cav', 'Haze_15850' => 'cav', 'Haze_23446' => 'cav', 'Haze_23942' => 'cav', 'Haze_23943' => 'cav', 'Hma1.2p1_0091F.1_g046450' => 'hma', 'Hma1.2p1_0128F.1_g059910' => 'hma', 'Hma1.2p1_0249F.1_g102260' => 'hma', 'Hma1.2p1_0453F.1_g156190' => 'hma', 'Hma1.2p1_0695F.1_g204380' => 'hma', 'Hma1.2p1_0749F.1_g212650' => 'hma', 'Hma1.2p1_2156F.1_g315420' => 'hma', 'Hma1.2p1_2686F.1_g326940' => 'hma', 'HPP92_006428' => 'vpl', 'HPP92_012069' => 'vpl', 'HPP92_014129' => 'vpl', 'HPP92_014133' => 'vpl', 'HPP92_017315' => 'vpl', 'HPP92_026445' => 'vpl', 'HPP92_026446' => 'vpl', 'Hund00774' => 'sun', 'Hund07682' => 'sun', 'Hund21413' => 'sun', 'Hund23462' => 'sun', 'Hund23463' => 'sun', 'Lalb_Chr03g0027911' => 'lal', 'Lalb_Chr13g0304271' => 'lal', 'Lalb_Chr19g0137471' => 'lal', 'Lalb_Chr22g0350651' => 'lal', 'Lalb_Chr24g0395151' => 'lal', 'Lj1A1231T40' => 'lonja', 'Lj1A221T48' => 'lonja', 'Lj1C924T12' => 'lonja', 'Lj2C993G6' => 'lonja', 'Lj3g0005790' => 'lja', 'Lj3g0015432' => 'lja', 'Lj3g0017722' => 'lja', 'Lj3g0018497' => 'lja', 'Lj4g0025071' => 'lja', 'Lsat_1_v5_gn_1_129680' => 'lsa', 'Lsat_1_v5_gn_2_25321' => 'lsa', 'Lsat_1_v5_gn_2_95461' => 'lsa', 'Lsat_1_v5_gn_4_159620' => 'lsa', 'Lsat_1_v5_gn_6_41301' => 'lsa', 'Lsat_1_v5_gn_6_74660' => 'lsa', 'Lsat_1_v5_gn_7_11520' => 'lsa', 'Lsat_1_v5_gn_9_67680' => 'lsa', 'Manes.04G008300' => 'mes', 'Manes.04G008400' => 'mes', 'Manes.04G026500' => 'mes', 'Manes.10G135300' => 'mes', 'Manes.11G157300' => 'mes', 'Manes.12G074000' => 'mes', 'Manes.16G006200' => 'mes', 'Manes.17G026400' => 'mes', 'Mapoly0024s0086' => 'mpo', 'Mapoly0024s0087' => 'mpo', 'Mapoly0071s0057' => 'mpo', 'Mapoly0204s0012' => 'mpo', 'MBI04_g37681_MAGBIO' => 'mbi', 'MBI05_g17779_MAGBIO' => 'mbi', 'MBI12_g31184_MAGBIO' => 'mbi', 'MBI17_g11083_MAGBIO' => 'mbi', 'MBI18_g03883_MAGBIO' => 'mbi', 'MBI18_g28940_MAGBIO' => 'mbi', 'MCO01G690' => 'mco', 'MD03G1109900' => 'mdo', 'MD03G1134800' => 'mdo', 'MD05G1348000' => 'mdo', 'MD10G1322400' => 'mdo', 'MD11G1123300' => 'mdo', 'MD11G1157600' => 'mdo', 'Medtr2g084875' => 'mtr', 'Medtr2g088130' => 'mtr', 'Medtr4g055310' => 'mtr', 'Medtr4g061070' => 'mtr', 'Medtr4g132250' => 'mtr', 'MELO3C004795.2' => 'cme', 'MELO3C004797.2' => 'cme', 'MELO3C007396.2' => 'cme', 'MELO3C019277.2' => 'cme', 'MELO3C021449.2' => 'cme', 'MELO3C025736.2' => 'cme', 'Migut.D02175' => 'egut', 'Migut.H01573' => 'egut', 'Migut.M01327' => 'egut', 'Migut.N02513' => 'egut', 'MSTRG.14638' => 'ama', 'MSTRG.18632' => 'ama', 'MSTRG.7203' => 'ama', 'Nitab4.5_0000533g0140' => 'nta', 'Nitab4.5_0000888g0150' => 'nta', 'Nitab4.5_0001453g0040' => 'nta', 'Nitab4.5_0002827g0090' => 'nta', 'Nitab4.5_0003082g0040' => 'nta', 'Nitab4.5_0007799g0040' => 'nta', 'Nitab4.5_0008983g0010' => 'nta', 'Nitab4.5_0009017g0020' => 'nta', 'Nn1g02132' => 'nnu', 'Nn1g03492' => 'nnu', 'Nn1g03493' => 'nnu', 'Nn1g03494' => 'nnu', 'Nn1g07164' => 'nnu', 'Nn1g07291' => 'nnu', 'Nn2g10655' => 'nnu', 'Nn2g11652' => 'nnu', 'Nn2g14008' => 'nnu', 'Nn3g17476' => 'nnu', 'Nn3g17477' => 'nnu', 'Nn4g22370' => 'nnu', 'Nn4g25255' => 'nnu', 'Nn5g27755' => 'nnu', 'Nn6g34260' => 'nnu', 'Nn6g35041' => 'nnu', 'Oeu005924.1' => 'oeu', 'Oeu008383.1' => 'oeu', 'Oeu014928.1' => 'oeu', 'Oeu019889.1' => 'oeu', 'Oeu022271.1' => 'oeu', 'Oeu025271.1' => 'oeu', 'Oeu036302.1' => 'oeu', 'Oeu044100.1' => 'oeu', 'Os01g0528300' => 'osa', 'Os03g0286200' => 'osa', 'Os04g0406600' => 'osa', 'Os07g0512000' => 'osa', 'Os07g0694600' => 'osa', 'Os08g0411000' => 'osa', 'Os09g0565700' => 'osa', 'Os09g0566050' => 'osa', 'Os10g0523700' => 'osa', 'Peaxi162Scf00002g00514' => 'pax', 'Peaxi162Scf00047g01817' => 'pax', 'Peaxi162Scf00114g00001' => 'pax', 'Peaxi162Scf00147g00613' => 'pax', 'Peaxi162Scf00389g00425' => 'pax', 'PGR042G1139' => 'pgr', 'PGR042G3273' => 'pgr', 'PGR102G2180' => 'pgr', 'PGR119G0234' => 'pgr', 'PGR119G0668' => 'pgr', 'PGSC0003DMG400007122' => 'stu', 'PGSC0003DMG400016478' => 'stu', 'PGSC0003DMG400025374' => 'stu', 'PGSC0003DMG400026536' => 'stu', 'Phvul.003G079600' => 'pvu', 'Phvul.005G115600' => 'pvu', 'Phvul.005G127100' => 'pvu', 'Phvul.006G149500' => 'pvu', 'Phvul.006G149600' => 'pvu', 'Phvul.011G071800' => 'pvu', 'Phvul.011G090400' => 'pvu', 'Potri.004G013400' => 'ptr', 'Potri.004G188100' => 'ptr', 'Potri.008G195500' => 'ptr', 'Potri.009G148800' => 'ptr', 'Potri.011G004700' => 'ptr', 'Pp3c17_22810' => 'ppa', 'Pp3c18_4480' => 'ppa', 'Pp3c19_13030' => 'ppa', 'Pp3c1_33620' => 'ppa', 'Pp3c2_9380' => 'ppa', 'PRCOL_00001023' => 'pco', 'Prupe.3G216300' => 'ppe', 'Prupe.4G019500' => 'ppe', 'Prupe.6G092500' => 'ppe', 'Prupe.6G119200' => 'ppe', 'Psat0s1945g0080' => 'psa', 'Psat0s4167g0040' => 'psa', 'Psat1g185800' => 'psa', 'Psat4g006440' => 'psa', 'Psat4g006480' => 'psa', 'Psat4g168120' => 'psa', 'Psat5g255680' => 'psa', 'Psat5g261760' => 'psa', 'Psat7g222120' => 'psa', 'PSO063G7252' => 'pso', 'PSO170G4778' => 'pso', 'PSO210G2249' => 'pso', 'PSO339G2411' => 'pso', 'PSO339G2457' => 'pso', 'PSO339G2854' => 'pso', 'PSO339G4288' => 'pso', 'PSO339G4615' => 'pso', 'PSO384G2796' => 'pso', 'PSO384G2940' => 'pso', 'PSO384G4227' => 'pso', 'PSO478G1425' => 'pso', 'PSO541G3863' => 'pso', 'PSO675G0507' => 'pso', 'PSO782G0338' => 'pso', 'PSO832G0644' => 'pso', 'QL01p013664' => 'qlo', 'QL01p036598' => 'qlo', 'QL05p072984' => 'qlo', 'QL08p005768' => 'qlo', 'QL08p032743' => 'qlo', 'QL93p0073_0439' => 'qlo', 'QL93p0073_0444' => 'qlo', 'RcHm_v2.0_Chr5g0002851' => 'rch', 'RcHm_v2.0_Chr5g0055201' => 'rch', 'RcHm_v2.0_Chr5g0061191' => 'rch', 'RcHm_v2.0_Chr7g0203231' => 'rch', 'Rhsim01G0208100' => 'rsi', 'Rhsim01G0208200' => 'rsi', 'Rhsim02G0106500' => 'rsi', 'Rhsim03G0107900' => 'rsi', 'Rhsim06G0163400' => 'rsi', 'Rhsim13G0105200' => 'rsi', 'Sabra04G0006300' => 'sbr', 'Sabra04G0127000' => 'sbr', 'Sabra08G0148700' => 'sbr', 'Sabra09G0117400' => 'sbr', 'SalBow1G3326' => 'sbo', 'SalBow3G3228' => 'sbo', 'SalBow6G1634' => 'sbo', 'SalBow6G3603' => 'sbo', 'SalBow6G5266' => 'sbo', 'SalBow7G2265' => 'sbo', 'SalBow8G0850' => 'sbo', 'SalBow8G2592' => 'sbo', 'Sc05g0009240' => 'sci', 'Sc12g0002300' => 'sci', 'Sc21g0000100' => 'sci', 'Sc21g0004720' => 'sci', 'Sed0002949' => 'sed', 'Sed0004114' => 'sed', 'Sed0004306' => 'sed', 'Sed0006172' => 'sed', 'Sed0008413' => 'sed', 'Sed0013809' => 'sed', 'Sed0019556' => 'sed', 'SEGI_03570' => 'sgi', 'SEGI_07859' => 'sgi', 'SEGI_15042' => 'sgi', 'SEGI_16263' => 'sgi', 'SEGI_16552' => 'sgi', 'SEGI_24331' => 'sgi', 'SEGI_27316' => 'sgi', 'SEGI_29521' => 'sgi', 'SEGI_41342' => 'sgi', 'SGA_v2.0_scaffold27G11617' => 'sas', 'SGA_v2.0_scaffold316G48428' => 'sas', 'SGA_v2.0_scaffold49G18261' => 'sas', 'SGA_v2.0_scaffold7G03831' => 'sas', 'SGA_v2.0_scaffold93G28359' => 'sas', 'SHI02210' => 'shi', 'SHI06028' => 'shi', 'SHI06321' => 'shi', 'SMO111G0012' => 'smo', 'SMO228G0080' => 'smo', 'SMO356G0756' => 'smo', 'Solyc02g080620.3' => 'sly', 'Solyc06g074530.1' => 'sly', 'Solyc11g066890.1' => 'sly', 'Solyc11g072520.3' => 'sly', 'Sopen02g025330' => 'spe', 'Sopen06g031000' => 'spe', 'Sopen09g008240' => 'spe', 'Sopen09g025210' => 'spe', 'Sopen11g026600' => 'spe', 'Sopen11g030170' => 'spe', 'Sp1g10420' => 'spa', 'Sp3g06570' => 'spa', 'Sp4g10660' => 'spa', 'Sp5g16460' => 'spa', 'Sp6g22710' => 'spa', 'TAR365G0112' => 'tar', 'TAR369G0717' => 'tar', 'TAR374G0976' => 'tar', 'TAR623G1128' => 'tar', 'TAR626G1937' => 'tar', 'TAR627G0123' => 'tar', 'TAR628G0305' => 'tar', 'TAR636G1176' => 'tar', 'TAR636G2442' => 'tar', 'THA.LOC104800556' => 'tha', 'THA.LOC104809501' => 'tha', 'THA.LOC104815126' => 'tha', 'THA.LOC104815732' => 'tha', 'THA.LOC104823528' => 'tha', 'Thecc.02G365600' => 'tca', 'Thecc.06G222300' => 'tca', 'Thecc.09G261800' => 'tca', 'Thecc.09G291400' => 'tca', 'Thhalv10003028m.g' => 'esa', 'Thhalv10007886m.g' => 'esa', 'Thhalv10016085m.g' => 'esa', 'Thhalv10016681m.g' => 'esa', 'Thhalv10020951m.g' => 'esa', 'TPR.G15598' => 'tpr', 'TPR.G29305' => 'tpr', 'TPR.G32395' => 'tpr', 'TPR.G36998' => 'tpr', 'TPR.G4227' => 'tpr', 'TWI18G1433' => 'twi', 'TWI31G0755' => 'twi', 'TWI38G0912' => 'twi', 'TWI75G1097' => 'twi', 'TWI75G1619' => 'twi', 'TWI79G1336' => 'twi', 'unitig_0.g943' => 'ugi', 'unitig_0.g944' => 'ugi', 'unitig_22.g6646' => 'ugi', 'unitig_37.g12681' => 'ugi', 'unitig_8.g3290' => 'ugi', 'vmacro03278' => 'vma', 'vmacro12197' => 'vma', 'vmacro14478' => 'vma', 'vmacro15787' => 'vma', 'vmacro15789' => 'vma', 'vmacro15790' => 'vma', 'vmacro15806' => 'vma', 'vmacro22907' => 'vma', 'vmacro22908' => 'vma', 'vmacro22909' => 'vma', 'vmacro23108' => 'vma', 'VMungo0540G0540' => 'vmu', 'VMungo0540G2468' => 'vmu', 'VMungo1080G0390' => 'vmu', 'VMungo1080G1165' => 'vmu', 'VMungo1127G0170' => 'vmu', 'VMungo1127G2099' => 'vmu', 'VMungo1215G3013' => 'vmu', 'Zm00001eb013110' => 'zma', 'Zm00001eb084260' => 'zma', 'Zm00001eb096110' => 'zma', 'Zm00001eb217510' => 'zma', 'Zm00001eb322550' => 'zma', 'Zm00001eb390770' => 'zma', 'Zm00001eb397170' => 'zma', 'Zm00001eb404610' => 'zma', 'Zm00001eb421790' => 'zma' ) $gf_id = 'HOM05D000911' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000911' ) $data_identifier = 'HOM05D000911' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 16, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 5, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 6, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 8, 'nnu' => (int) 16, 'oeu' => (int) 8, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 5, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 16, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421790' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000911', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27780' => 'bna', 'A03p35380' => 'bna', 'A04p21160' => 'bna', 'A05p40570' => 'bna', 'A06p26900' => 'bna', 'A08p33230' => 'bna', 'A09p65960' => 'bna', 'A10p18290' => 'bna', 'Aa31LG1G12990' => 'aar', 'Aa31LG1G2980' => 'aar', 'Aa31LG4G14320' => 'aar', 'Aa31LG7G11800' => 'aar', 'Aa31sc36G50' => 'aar', 'Aa31sc36G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3721' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5459' => 'aag', 'Actinidia03028' => 'ach', 'Actinidia03753' => 'ach', 'Actinidia04187' => 'ach', 'Actinidia05509' => 'ach', 'Actinidia24180' => 'ach', 'Actinidia26906' => 'ach', 'Actinidia37097' => 'ach', 'Actinidia38249' => 'ach', 'Ah.01g003470' => 'amhyb', 'Ah.01g004580' => 'amhyb', 'Ah.01g014850' => 'amhyb', 'Ah.01g016830' => 'amhyb', 'Ah.14g088000' => 'amhyb', 'AL1G22980' => 'aly', 'AL3G18990' => 'aly', 'AL4G22440' => 'aly', 'AL4G33180' => 'aly', 'AL5G22920' => 'aly', 'AL6G33660' => 'aly', 'AL8G20720' => 'aly', 'Aqoxy1G00935' => 'aox', 'Aqoxy1G02094' => 'aox', 'Aqoxy2G01239' => 'aox', 'Aqoxy4G01870' => 'aox', 'Aqoxy7G00450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.36ZVTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71EM27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5D6C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH3WRE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3NCM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RIM768' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YB5YRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z36GDV' => 'arhy', 'AT1G08250' => 'ath', 'AT1G11790' => 'ath', 'AT2G27820' => 'ath', 'AT3G07630' => 'ath', 'AT3G44720' => 'ath', 'AT5G22630' => 'ath', 'ATR0693G304' => 'atr', 'ATR0794G109' => 'atr', 'ATR0820G120' => 'atr', 'ATR1159G064' => 'atr', 'Atru.chr10.2239' => 'acertr', 'Atru.chr3.3371' => 'acertr', 'Atru.chr6.3202' => 'acertr', 'AUR62006499' => 'cqu', 'AUR62012718' => 'cqu', 'AUR62021938' => 'cqu', 'AUR62023932' => 'cqu', 'AUR62025034' => 'cqu', 'AUR62025035' => 'cqu', 'AUR62038307' => 'cqu', 'AUR62043466' => 'cqu', 'BcaB02g10748' => 'bca', 'BcaB03g13231' => 'bca', 'BcaB03g14689' => 'bca', 'BcaB05g22716' => 'bca', 'BcaB06g28172' => 'bca', 'BcaB08g36413' => 'bca', 'BcaC01g02186' => 'bca', 'BcaC01g04272' => 'bca', 'BcaC02g08080' => 'bca', 'BcaC02g08227' => 'bca', 'BcaC03g13901' => 'bca', 'BcaC04g19593' => 'bca', 'BcaC04g20874' => 'bca', 'BcaC05g29557' => 'bca', 'BcaC06g35505' => 'bca', 'BcaC07g41954' => 'bca', 'BcaC07g41955' => 'bca', 'BcaC07g41956' => 'bca', 'BcaC07g42519' => 'bca', 'BcaC07g42520' => 'bca', 'BcaC07g42523' => 'bca', 'BcaC07g42524' => 'bca', 'BcaC07g42525' => 'bca', 'BcaC08g47480' => 'bca', 'BcaC08g47481' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00530' => 'bna', 'BolC2t07178H' => 'bol', 'BolC3t16567H' => 'bol', 'BolC4t27234H' => 'bol', 'BolC5t29728H' => 'bol', 'BolC5t34622H' => 'bol', 'BolC6t40321H' => 'bol', 'BolC7t42028H' => 'bol', 'BolC8t49125H' => 'bol', 'BolC8t52538H' => 'bol', 'BolC8t52539H' => 'bol', 'BolC9t56681H' => 'bol', 'BolC9t58266H' => 'bol', 'BolSC21t60294H' => 'bol', 'BraA02t05670Z' => 'bra', 'BraA03t12716Z' => 'bra', 'BraA04t17685Z' => 'bra', 'BraA05t22788Z' => 'bra', 'BraA06t24032Z' => 'bra', 'BraA06t25625Z' => 'bra', 'BraA07t27930Z' => 'bra', 'BraA08t35242Z' => 'bra', 'BraA09t38609Z' => 'bra', 'BraA10t43905Z' => 'bra', 'C02p11060' => 'bna', 'C03p42990' => 'bna', 'C03p67310' => 'bna', 'C04p56990' => 'bna', 'C04p58660' => 'bna', 'C05p09890' => 'bna', 'C05p59680' => 'bna', 'C06p19830' => 'bna', 'C06p53040' => 'bna', 'C07p15230' => 'bna', 'C08p50070' => 'bna', 'C08p50090' => 'bna', 'C09p38330' => 'bna', 'C09p53940' => 'bna', 'CAN.G1014.1' => 'can', 'CAN.G644.30' => 'can', 'CAN.G84.47' => 'can', 'CAN.G919.8' => 'can', 'CANSAT54G0113' => 'cansat', 'CANSAT54G1286' => 'cansat', 'CANSAT64G1020' => 'cansat', 'CARHR008080' => 'chi', 'CARHR008090' => 'chi', 'CARHR012130' => 'chi', 'CARHR038390' => 'chi', 'CARHR082330' => 'chi', 'CARHR120520' => 'chi', 'CARHR151470' => 'chi', 'CARHR190950' => 'chi', 'Carub.0001s0760' => 'cru', 'Carub.0001s1146' => 'cru', 'Carub.0003s0721' => 'cru', 'Carub.0004s0858' => 'cru', 'Carub.0005s1040' => 'cru', 'Carub.0006s2035' => 'cru', 'Carub.0015s0005' => 'cru', 'Ca_01607_v3' => 'car', 'Ca_01677_v3' => 'car', 'Ca_06087_v3' => 'car', 'Ca_19238_v3' => 'car', 'Ca_19373_v3' => 'car', 'Ca_21079_v3' => 'car', 'CBR_g54016' => 'cbr', 'CBR_g54018' => 'cbr', 'CBR_g54020' => 'cbr', 'Cc01_g09780' => 'ccan', 'Cc01_g11680' => 'ccan', 'Cc02_g15610' => 'ccan', 'Cc05_g04350' => 'ccan', 'Cc09_g01580' => 'ccan', 'CDE01G0795' => 'cde', 'CDE02G2024' => 'cde', 'CDE02G2260' => 'cde', 'CDE02G4561' => 'cde', 'CDE05G2733' => 'cde', 'CDE05G3422' => 'cde', 'CDE06G2003' => 'cde', 'CDE08G0576' => 'cde', 'CDE09G0048' => 'cde', 'CDE11G0805' => 'cde', 'Cfa003644' => 'cfa', 'Cfa006290' => 'cfa', 'Cfa010080' => 'cfa', 'Cfa011376' => 'cfa', 'Cfa011576' => 'cfa', 'Cfa011577' => 'cfa', 'Cfa014389' => 'cfa', 'Ciclev10006044m.g' => 'ccl', 'Ciclev10006954m.g' => 'ccl', 'Ciclev10015131m.g' => 'ccl', 'Ciclev10015580m.g' => 'ccl', 'Ciclev10028359m.g' => 'ccl', 'Ciclev10028573m.g' => 'ccl', 'CiPaw.03G159300' => 'cil', 'CiPaw.04G115100' => 'cil', 'CiPaw.09G092800' => 'cil', 'CiPaw.10G071800' => 'cil', 'CiPaw.13G105800' => 'cil', 'CiPaw.13G141000' => 'cil', 'CiPaw.14G103400' => 'cil', 'ClCG01G012700' => 'cla', 'ClCG01G012720' => 'cla', 'ClCG01G021920' => 'cla', 'ClCG02G008870' => 'cla', 'ClCG02G020840' => 'cla', 'ClCG02G021930' => 'cla', 'COL.COLO4_19302' => 'col', 'COL.COLO4_25262' => 'col', 'COL.COLO4_31788' => 'col', 'Cpa.g.c34684' => 'cpa', 'Cpa.g.c36520.1' => 'cpa', 'Cpa.g.c45626' => 'cpa', 'Cpa.g.sc121.17' => 'cpa', 'Cpa.g.sc13.22' => 'cpa', 'Cpa.g.sc87.88' => 'cpa', 'Cre06.g261800' => 'cre', 'CsaV3_1G014500' => 'csa', 'CsaV3_1G014510' => 'csa', 'CsaV3_2G034880' => 'csa', 'CsaV3_6G014760' => 'csa', 'CsaV3_6G021500' => 'csa', 'CsaV3_6G048980' => 'csa', 'CSS0002511' => 'camsi', 'CSS0007556' => 'camsi', 'CSS0008532' => 'camsi', 'CSS0009709' => 'camsi', 'CSS0010486' => 'camsi', 'CSS0016768' => 'camsi', 'CSS0023512' => 'camsi', 'CSS0025341' => 'camsi', 'CSS0027999' => 'camsi', 'CSS0028944' => 'camsi', 'CSS0032292' => 'camsi', 'CSS0032464' => 'camsi', 'CSS0037153' => 'camsi', 'CSS0039256' => 'camsi', 'CSS0048392' => 'camsi', 'CSS0050458' => 'camsi', 'DCAR_004224' => 'dca', 'DCAR_006147' => 'dca', 'DCAR_006465' => 'dca', 'DCAR_008159' => 'dca', 'DCAR_012164' => 'dca', 'DCAR_019764' => 'dca', 'Dinv05418' => 'din', 'Dinv10839' => 'din', 'Dinv12521' => 'din', 'Dinv13900' => 'din', 'Dinv29426' => 'din', 'Duzib150G0263' => 'dzi', 'Duzib168G1178' => 'dzi', 'Duzib168G1924' => 'dzi', 'Duzib170G0299' => 'dzi', 'Duzib170G0813' => 'dzi', 'Duzib235G1128' => 'dzi', 'Duzib248G1060' => 'dzi', 'ECA232G1910' => 'eca', 'ECA233G4621' => 'eca', 'ECA238G1216' => 'eca', 'ECA238G1784' => 'eca', 'ECA248G1242' => 'eca', 'EL10Ac8g20071' => 'bvu', 'EL10Ac9g21086' => 'bvu', 'EL10Ac9g22407' => 'bvu', 'EL10Ac9g22412' => 'bvu', 'Eucgr.A01119' => 'egr', 'Eucgr.E04043' => 'egr', 'Eucgr.J00428' => 'egr', 'Eucgr.J00958' => 'egr', 'FAN11G3091' => 'fan', 'FAN11G3651' => 'fan', 'FAN16G2566' => 'fan', 'FAN21G3155' => 'fan', 'FAN21G3400' => 'fan', 'FAN21G3543' => 'fan', 'FAN25G0234' => 'fan', 'FAN25G1422' => 'fan', 'FAN25G3392' => 'fan', 'FvH4_3g01940' => 'fve', 'FvH4_3g29870' => 'fve', 'FvH4_3g33680' => 'fve', 'Glyma.09G004200' => 'gma', 'Glyma.11G151288' => 'gma', 'Glyma.11G189100' => 'gma', 'Glyma.12G072500' => 'gma', 'Glyma.12G085500' => 'gma', 'Glyma.12G181800' => 'gma', 'Glyma.12G193000' => 'gma', 'Glyma.13G309300' => 'gma', 'Glyma.13G319000' => 'gma', 'Glyma.17G012600' => 'gma', 'Gohir.A06G148600' => 'ghi', 'Gohir.A07G115800' => 'ghi', 'Gohir.A08G003600' => 'ghi', 'Gohir.A09G093300' => 'ghi', 'Gohir.A09G105400' => 'ghi', 'Gohir.A09G105500' => 'ghi', 'Gohir.D06G154600' => 'ghi', 'Gohir.D07G120200' => 'ghi', 'Gohir.D08G013900' => 'ghi', 'Gohir.D09G093100' => 'ghi', 'Gohir.D09G102200' => 'ghi', 'Gohir.D09G102300' => 'ghi', 'Gorai.001G129400' => 'gra', 'Gorai.004G008200' => 'gra', 'Gorai.006G109800' => 'gra', 'Gorai.006G119500' => 'gra', 'Gorai.006G121300' => 'gra', 'Gorai.010G180700' => 'gra', 'GSVIVG01012716001' => 'vvi', 'GSVIVG01025118001' => 'vvi', 'GSVIVG01030439001' => 'vvi', 'GSVIVG01031397001' => 'vvi', 'HanXRQChr01g0004201' => 'han', 'HanXRQChr02g0054941' => 'han', 'HanXRQChr05g0141811' => 'han', 'HanXRQChr07g0197751' => 'han', 'HanXRQChr11g0346691' => 'han', 'HanXRQChr13g0396971' => 'han', 'HanXRQChr14g0432951' => 'han', 'HanXRQChr14g0452001' => 'han', 'HanXRQChr15g0496681' => 'han', 'HanXRQChr17g0557491' => 'han', 'HanXRQChr17g0557501' => 'han', 'Haze_06809' => 'cav', 'Haze_12852' => 'cav', 'Haze_15850' => 'cav', 'Haze_23446' => 'cav', 'Haze_23942' => 'cav', 'Haze_23943' => 'cav', 'Hma1.2p1_0091F.1_g046450' => 'hma', 'Hma1.2p1_0128F.1_g059910' => 'hma', 'Hma1.2p1_0249F.1_g102260' => 'hma', 'Hma1.2p1_0453F.1_g156190' => 'hma', 'Hma1.2p1_0695F.1_g204380' => 'hma', 'Hma1.2p1_0749F.1_g212650' => 'hma', 'Hma1.2p1_2156F.1_g315420' => 'hma', 'Hma1.2p1_2686F.1_g326940' => 'hma', 'HPP92_006428' => 'vpl', 'HPP92_012069' => 'vpl', 'HPP92_014129' => 'vpl', 'HPP92_014133' => 'vpl', 'HPP92_017315' => 'vpl', 'HPP92_026445' => 'vpl', 'HPP92_026446' => 'vpl', 'Hund00774' => 'sun', 'Hund07682' => 'sun', 'Hund21413' => 'sun', 'Hund23462' => 'sun', 'Hund23463' => 'sun', 'Lalb_Chr03g0027911' => 'lal', 'Lalb_Chr13g0304271' => 'lal', 'Lalb_Chr19g0137471' => 'lal', 'Lalb_Chr22g0350651' => 'lal', 'Lalb_Chr24g0395151' => 'lal', 'Lj1A1231T40' => 'lonja', 'Lj1A221T48' => 'lonja', 'Lj1C924T12' => 'lonja', 'Lj2C993G6' => 'lonja', 'Lj3g0005790' => 'lja', 'Lj3g0015432' => 'lja', 'Lj3g0017722' => 'lja', 'Lj3g0018497' => 'lja', 'Lj4g0025071' => 'lja', 'Lsat_1_v5_gn_1_129680' => 'lsa', 'Lsat_1_v5_gn_2_25321' => 'lsa', 'Lsat_1_v5_gn_2_95461' => 'lsa', 'Lsat_1_v5_gn_4_159620' => 'lsa', 'Lsat_1_v5_gn_6_41301' => 'lsa', 'Lsat_1_v5_gn_6_74660' => 'lsa', 'Lsat_1_v5_gn_7_11520' => 'lsa', 'Lsat_1_v5_gn_9_67680' => 'lsa', 'Manes.04G008300' => 'mes', 'Manes.04G008400' => 'mes', 'Manes.04G026500' => 'mes', 'Manes.10G135300' => 'mes', 'Manes.11G157300' => 'mes', 'Manes.12G074000' => 'mes', 'Manes.16G006200' => 'mes', 'Manes.17G026400' => 'mes', 'Mapoly0024s0086' => 'mpo', 'Mapoly0024s0087' => 'mpo', 'Mapoly0071s0057' => 'mpo', 'Mapoly0204s0012' => 'mpo', 'MBI04_g37681_MAGBIO' => 'mbi', 'MBI05_g17779_MAGBIO' => 'mbi', 'MBI12_g31184_MAGBIO' => 'mbi', 'MBI17_g11083_MAGBIO' => 'mbi', 'MBI18_g03883_MAGBIO' => 'mbi', 'MBI18_g28940_MAGBIO' => 'mbi', 'MCO01G690' => 'mco', 'MD03G1109900' => 'mdo', 'MD03G1134800' => 'mdo', 'MD05G1348000' => 'mdo', 'MD10G1322400' => 'mdo', 'MD11G1123300' => 'mdo', 'MD11G1157600' => 'mdo', 'Medtr2g084875' => 'mtr', 'Medtr2g088130' => 'mtr', 'Medtr4g055310' => 'mtr', 'Medtr4g061070' => 'mtr', 'Medtr4g132250' => 'mtr', 'MELO3C004795.2' => 'cme', 'MELO3C004797.2' => 'cme', 'MELO3C007396.2' => 'cme', 'MELO3C019277.2' => 'cme', 'MELO3C021449.2' => 'cme', 'MELO3C025736.2' => 'cme', 'Migut.D02175' => 'egut', 'Migut.H01573' => 'egut', 'Migut.M01327' => 'egut', 'Migut.N02513' => 'egut', 'MSTRG.14638' => 'ama', 'MSTRG.18632' => 'ama', 'MSTRG.7203' => 'ama', 'Nitab4.5_0000533g0140' => 'nta', 'Nitab4.5_0000888g0150' => 'nta', 'Nitab4.5_0001453g0040' => 'nta', 'Nitab4.5_0002827g0090' => 'nta', 'Nitab4.5_0003082g0040' => 'nta', 'Nitab4.5_0007799g0040' => 'nta', 'Nitab4.5_0008983g0010' => 'nta', 'Nitab4.5_0009017g0020' => 'nta', 'Nn1g02132' => 'nnu', 'Nn1g03492' => 'nnu', 'Nn1g03493' => 'nnu', 'Nn1g03494' => 'nnu', 'Nn1g07164' => 'nnu', 'Nn1g07291' => 'nnu', 'Nn2g10655' => 'nnu', 'Nn2g11652' => 'nnu', 'Nn2g14008' => 'nnu', 'Nn3g17476' => 'nnu', 'Nn3g17477' => 'nnu', 'Nn4g22370' => 'nnu', 'Nn4g25255' => 'nnu', 'Nn5g27755' => 'nnu', 'Nn6g34260' => 'nnu', 'Nn6g35041' => 'nnu', 'Oeu005924.1' => 'oeu', 'Oeu008383.1' => 'oeu', 'Oeu014928.1' => 'oeu', 'Oeu019889.1' => 'oeu', 'Oeu022271.1' => 'oeu', 'Oeu025271.1' => 'oeu', 'Oeu036302.1' => 'oeu', 'Oeu044100.1' => 'oeu', 'Os01g0528300' => 'osa', 'Os03g0286200' => 'osa', 'Os04g0406600' => 'osa', 'Os07g0512000' => 'osa', 'Os07g0694600' => 'osa', 'Os08g0411000' => 'osa', 'Os09g0565700' => 'osa', 'Os09g0566050' => 'osa', 'Os10g0523700' => 'osa', 'Peaxi162Scf00002g00514' => 'pax', 'Peaxi162Scf00047g01817' => 'pax', 'Peaxi162Scf00114g00001' => 'pax', 'Peaxi162Scf00147g00613' => 'pax', 'Peaxi162Scf00389g00425' => 'pax', 'PGR042G1139' => 'pgr', 'PGR042G3273' => 'pgr', 'PGR102G2180' => 'pgr', 'PGR119G0234' => 'pgr', 'PGR119G0668' => 'pgr', 'PGSC0003DMG400007122' => 'stu', 'PGSC0003DMG400016478' => 'stu', 'PGSC0003DMG400025374' => 'stu', 'PGSC0003DMG400026536' => 'stu', 'Phvul.003G079600' => 'pvu', 'Phvul.005G115600' => 'pvu', 'Phvul.005G127100' => 'pvu', 'Phvul.006G149500' => 'pvu', 'Phvul.006G149600' => 'pvu', 'Phvul.011G071800' => 'pvu', 'Phvul.011G090400' => 'pvu', 'Potri.004G013400' => 'ptr', 'Potri.004G188100' => 'ptr', 'Potri.008G195500' => 'ptr', 'Potri.009G148800' => 'ptr', 'Potri.011G004700' => 'ptr', 'Pp3c17_22810' => 'ppa', 'Pp3c18_4480' => 'ppa', 'Pp3c19_13030' => 'ppa', 'Pp3c1_33620' => 'ppa', 'Pp3c2_9380' => 'ppa', 'PRCOL_00001023' => 'pco', 'Prupe.3G216300' => 'ppe', 'Prupe.4G019500' => 'ppe', 'Prupe.6G092500' => 'ppe', 'Prupe.6G119200' => 'ppe', 'Psat0s1945g0080' => 'psa', 'Psat0s4167g0040' => 'psa', 'Psat1g185800' => 'psa', 'Psat4g006440' => 'psa', 'Psat4g006480' => 'psa', 'Psat4g168120' => 'psa', 'Psat5g255680' => 'psa', 'Psat5g261760' => 'psa', 'Psat7g222120' => 'psa', 'PSO063G7252' => 'pso', 'PSO170G4778' => 'pso', 'PSO210G2249' => 'pso', 'PSO339G2411' => 'pso', 'PSO339G2457' => 'pso', 'PSO339G2854' => 'pso', 'PSO339G4288' => 'pso', 'PSO339G4615' => 'pso', 'PSO384G2796' => 'pso', 'PSO384G2940' => 'pso', 'PSO384G4227' => 'pso', 'PSO478G1425' => 'pso', 'PSO541G3863' => 'pso', 'PSO675G0507' => 'pso', 'PSO782G0338' => 'pso', 'PSO832G0644' => 'pso', 'QL01p013664' => 'qlo', 'QL01p036598' => 'qlo', 'QL05p072984' => 'qlo', 'QL08p005768' => 'qlo', 'QL08p032743' => 'qlo', 'QL93p0073_0439' => 'qlo', 'QL93p0073_0444' => 'qlo', 'RcHm_v2.0_Chr5g0002851' => 'rch', 'RcHm_v2.0_Chr5g0055201' => 'rch', 'RcHm_v2.0_Chr5g0061191' => 'rch', 'RcHm_v2.0_Chr7g0203231' => 'rch', 'Rhsim01G0208100' => 'rsi', 'Rhsim01G0208200' => 'rsi', 'Rhsim02G0106500' => 'rsi', 'Rhsim03G0107900' => 'rsi', 'Rhsim06G0163400' => 'rsi', 'Rhsim13G0105200' => 'rsi', 'Sabra04G0006300' => 'sbr', 'Sabra04G0127000' => 'sbr', 'Sabra08G0148700' => 'sbr', 'Sabra09G0117400' => 'sbr', 'SalBow1G3326' => 'sbo', 'SalBow3G3228' => 'sbo', 'SalBow6G1634' => 'sbo', 'SalBow6G3603' => 'sbo', 'SalBow6G5266' => 'sbo', 'SalBow7G2265' => 'sbo', 'SalBow8G0850' => 'sbo', 'SalBow8G2592' => 'sbo', 'Sc05g0009240' => 'sci', 'Sc12g0002300' => 'sci', 'Sc21g0000100' => 'sci', 'Sc21g0004720' => 'sci', 'Sed0002949' => 'sed', 'Sed0004114' => 'sed', 'Sed0004306' => 'sed', 'Sed0006172' => 'sed', 'Sed0008413' => 'sed', 'Sed0013809' => 'sed', 'Sed0019556' => 'sed', 'SEGI_03570' => 'sgi', 'SEGI_07859' => 'sgi', 'SEGI_15042' => 'sgi', 'SEGI_16263' => 'sgi', 'SEGI_16552' => 'sgi', 'SEGI_24331' => 'sgi', 'SEGI_27316' => 'sgi', 'SEGI_29521' => 'sgi', 'SEGI_41342' => 'sgi', 'SGA_v2.0_scaffold27G11617' => 'sas', 'SGA_v2.0_scaffold316G48428' => 'sas', 'SGA_v2.0_scaffold49G18261' => 'sas', 'SGA_v2.0_scaffold7G03831' => 'sas', 'SGA_v2.0_scaffold93G28359' => 'sas', 'SHI02210' => 'shi', 'SHI06028' => 'shi', 'SHI06321' => 'shi', 'SMO111G0012' => 'smo', 'SMO228G0080' => 'smo', 'SMO356G0756' => 'smo', 'Solyc02g080620.3' => 'sly', 'Solyc06g074530.1' => 'sly', 'Solyc11g066890.1' => 'sly', 'Solyc11g072520.3' => 'sly', 'Sopen02g025330' => 'spe', 'Sopen06g031000' => 'spe', 'Sopen09g008240' => 'spe', 'Sopen09g025210' => 'spe', 'Sopen11g026600' => 'spe', 'Sopen11g030170' => 'spe', 'Sp1g10420' => 'spa', 'Sp3g06570' => 'spa', 'Sp4g10660' => 'spa', 'Sp5g16460' => 'spa', 'Sp6g22710' => 'spa', 'TAR365G0112' => 'tar', 'TAR369G0717' => 'tar', 'TAR374G0976' => 'tar', 'TAR623G1128' => 'tar', 'TAR626G1937' => 'tar', 'TAR627G0123' => 'tar', 'TAR628G0305' => 'tar', 'TAR636G1176' => 'tar', 'TAR636G2442' => 'tar', 'THA.LOC104800556' => 'tha', 'THA.LOC104809501' => 'tha', 'THA.LOC104815126' => 'tha', 'THA.LOC104815732' => 'tha', 'THA.LOC104823528' => 'tha', 'Thecc.02G365600' => 'tca', 'Thecc.06G222300' => 'tca', 'Thecc.09G261800' => 'tca', 'Thecc.09G291400' => 'tca', 'Thhalv10003028m.g' => 'esa', 'Thhalv10007886m.g' => 'esa', 'Thhalv10016085m.g' => 'esa', 'Thhalv10016681m.g' => 'esa', 'Thhalv10020951m.g' => 'esa', 'TPR.G15598' => 'tpr', 'TPR.G29305' => 'tpr', 'TPR.G32395' => 'tpr', 'TPR.G36998' => 'tpr', 'TPR.G4227' => 'tpr', 'TWI18G1433' => 'twi', 'TWI31G0755' => 'twi', 'TWI38G0912' => 'twi', 'TWI75G1097' => 'twi', 'TWI75G1619' => 'twi', 'TWI79G1336' => 'twi', 'unitig_0.g943' => 'ugi', 'unitig_0.g944' => 'ugi', 'unitig_22.g6646' => 'ugi', 'unitig_37.g12681' => 'ugi', 'unitig_8.g3290' => 'ugi', 'vmacro03278' => 'vma', 'vmacro12197' => 'vma', 'vmacro14478' => 'vma', 'vmacro15787' => 'vma', 'vmacro15789' => 'vma', 'vmacro15790' => 'vma', 'vmacro15806' => 'vma', 'vmacro22907' => 'vma', 'vmacro22908' => 'vma', 'vmacro22909' => 'vma', 'vmacro23108' => 'vma', 'VMungo0540G0540' => 'vmu', 'VMungo0540G2468' => 'vmu', 'VMungo1080G0390' => 'vmu', 'VMungo1080G1165' => 'vmu', 'VMungo1127G0170' => 'vmu', 'VMungo1127G2099' => 'vmu', 'VMungo1215G3013' => 'vmu', 'Zm00001eb013110' => 'zma', 'Zm00001eb084260' => 'zma', 'Zm00001eb096110' => 'zma', 'Zm00001eb217510' => 'zma', 'Zm00001eb322550' => 'zma', 'Zm00001eb390770' => 'zma', 'Zm00001eb397170' => 'zma', 'Zm00001eb404610' => 'zma', 'Zm00001eb421790' => 'zma' ), 'gf_id' => 'HOM05D000911', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000911' ), 'data_identifier' => 'HOM05D000911', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000911', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27780' => 'bna', 'A03p35380' => 'bna', 'A04p21160' => 'bna', 'A05p40570' => 'bna', 'A06p26900' => 'bna', 'A08p33230' => 'bna', 'A09p65960' => 'bna', 'A10p18290' => 'bna', 'Aa31LG1G12990' => 'aar', 'Aa31LG1G2980' => 'aar', 'Aa31LG4G14320' => 'aar', 'Aa31LG7G11800' => 'aar', 'Aa31sc36G50' => 'aar', 'Aa31sc36G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3721' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5459' => 'aag', 'Actinidia03028' => 'ach', 'Actinidia03753' => 'ach', 'Actinidia04187' => 'ach', 'Actinidia05509' => 'ach', 'Actinidia24180' => 'ach', 'Actinidia26906' => 'ach', 'Actinidia37097' => 'ach', 'Actinidia38249' => 'ach', 'Ah.01g003470' => 'amhyb', 'Ah.01g004580' => 'amhyb', 'Ah.01g014850' => 'amhyb', 'Ah.01g016830' => 'amhyb', 'Ah.14g088000' => 'amhyb', 'AL1G22980' => 'aly', 'AL3G18990' => 'aly', 'AL4G22440' => 'aly', 'AL4G33180' => 'aly', 'AL5G22920' => 'aly', 'AL6G33660' => 'aly', 'AL8G20720' => 'aly', 'Aqoxy1G00935' => 'aox', 'Aqoxy1G02094' => 'aox', 'Aqoxy2G01239' => 'aox', 'Aqoxy4G01870' => 'aox', 'Aqoxy7G00450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.36ZVTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71EM27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5D6C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH3WRE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3NCM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RIM768' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YB5YRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z36GDV' => 'arhy', 'AT1G08250' => 'ath', 'AT1G11790' => 'ath', 'AT2G27820' => 'ath', 'AT3G07630' => 'ath', 'AT3G44720' => 'ath', 'AT5G22630' => 'ath', 'ATR0693G304' => 'atr', 'ATR0794G109' => 'atr', 'ATR0820G120' => 'atr', 'ATR1159G064' => 'atr', 'Atru.chr10.2239' => 'acertr', 'Atru.chr3.3371' => 'acertr', 'Atru.chr6.3202' => 'acertr', 'AUR62006499' => 'cqu', 'AUR62012718' => 'cqu', 'AUR62021938' => 'cqu', 'AUR62023932' => 'cqu', 'AUR62025034' => 'cqu', 'AUR62025035' => 'cqu', 'AUR62038307' => 'cqu', 'AUR62043466' => 'cqu', 'BcaB02g10748' => 'bca', 'BcaB03g13231' => 'bca', 'BcaB03g14689' => 'bca', 'BcaB05g22716' => 'bca', 'BcaB06g28172' => 'bca', 'BcaB08g36413' => 'bca', 'BcaC01g02186' => 'bca', 'BcaC01g04272' => 'bca', 'BcaC02g08080' => 'bca', 'BcaC02g08227' => 'bca', 'BcaC03g13901' => 'bca', 'BcaC04g19593' => 'bca', 'BcaC04g20874' => 'bca', 'BcaC05g29557' => 'bca', 'BcaC06g35505' => 'bca', 'BcaC07g41954' => 'bca', 'BcaC07g41955' => 'bca', 'BcaC07g41956' => 'bca', 'BcaC07g42519' => 'bca', 'BcaC07g42520' => 'bca', 'BcaC07g42523' => 'bca', 'BcaC07g42524' => 'bca', 'BcaC07g42525' => 'bca', 'BcaC08g47480' => 'bca', 'BcaC08g47481' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00530' => 'bna', 'BolC2t07178H' => 'bol', 'BolC3t16567H' => 'bol', 'BolC4t27234H' => 'bol', 'BolC5t29728H' => 'bol', 'BolC5t34622H' => 'bol', 'BolC6t40321H' => 'bol', 'BolC7t42028H' => 'bol', 'BolC8t49125H' => 'bol', 'BolC8t52538H' => 'bol', 'BolC8t52539H' => 'bol', 'BolC9t56681H' => 'bol', 'BolC9t58266H' => 'bol', 'BolSC21t60294H' => 'bol', 'BraA02t05670Z' => 'bra', 'BraA03t12716Z' => 'bra', 'BraA04t17685Z' => 'bra', 'BraA05t22788Z' => 'bra', 'BraA06t24032Z' => 'bra', 'BraA06t25625Z' => 'bra', 'BraA07t27930Z' => 'bra', 'BraA08t35242Z' => 'bra', 'BraA09t38609Z' => 'bra', 'BraA10t43905Z' => 'bra', 'C02p11060' => 'bna', 'C03p42990' => 'bna', 'C03p67310' => 'bna', 'C04p56990' => 'bna', 'C04p58660' => 'bna', 'C05p09890' => 'bna', 'C05p59680' => 'bna', 'C06p19830' => 'bna', 'C06p53040' => 'bna', 'C07p15230' => 'bna', 'C08p50070' => 'bna', 'C08p50090' => 'bna', 'C09p38330' => 'bna', 'C09p53940' => 'bna', 'CAN.G1014.1' => 'can', 'CAN.G644.30' => 'can', 'CAN.G84.47' => 'can', 'CAN.G919.8' => 'can', 'CANSAT54G0113' => 'cansat', 'CANSAT54G1286' => 'cansat', 'CANSAT64G1020' => 'cansat', 'CARHR008080' => 'chi', 'CARHR008090' => 'chi', 'CARHR012130' => 'chi', 'CARHR038390' => 'chi', 'CARHR082330' => 'chi', 'CARHR120520' => 'chi', 'CARHR151470' => 'chi', 'CARHR190950' => 'chi', 'Carub.0001s0760' => 'cru', 'Carub.0001s1146' => 'cru', 'Carub.0003s0721' => 'cru', 'Carub.0004s0858' => 'cru', 'Carub.0005s1040' => 'cru', 'Carub.0006s2035' => 'cru', 'Carub.0015s0005' => 'cru', 'Ca_01607_v3' => 'car', 'Ca_01677_v3' => 'car', 'Ca_06087_v3' => 'car', 'Ca_19238_v3' => 'car', 'Ca_19373_v3' => 'car', 'Ca_21079_v3' => 'car', 'CBR_g54016' => 'cbr', 'CBR_g54018' => 'cbr', 'CBR_g54020' => 'cbr', 'Cc01_g09780' => 'ccan', 'Cc01_g11680' => 'ccan', 'Cc02_g15610' => 'ccan', 'Cc05_g04350' => 'ccan', 'Cc09_g01580' => 'ccan', 'CDE01G0795' => 'cde', 'CDE02G2024' => 'cde', 'CDE02G2260' => 'cde', 'CDE02G4561' => 'cde', 'CDE05G2733' => 'cde', 'CDE05G3422' => 'cde', 'CDE06G2003' => 'cde', 'CDE08G0576' => 'cde', 'CDE09G0048' => 'cde', 'CDE11G0805' => 'cde', 'Cfa003644' => 'cfa', 'Cfa006290' => 'cfa', 'Cfa010080' => 'cfa', 'Cfa011376' => 'cfa', 'Cfa011576' => 'cfa', 'Cfa011577' => 'cfa', 'Cfa014389' => 'cfa', 'Ciclev10006044m.g' => 'ccl', 'Ciclev10006954m.g' => 'ccl', 'Ciclev10015131m.g' => 'ccl', 'Ciclev10015580m.g' => 'ccl', 'Ciclev10028359m.g' => 'ccl', 'Ciclev10028573m.g' => 'ccl', 'CiPaw.03G159300' => 'cil', 'CiPaw.04G115100' => 'cil', 'CiPaw.09G092800' => 'cil', 'CiPaw.10G071800' => 'cil', 'CiPaw.13G105800' => 'cil', 'CiPaw.13G141000' => 'cil', 'CiPaw.14G103400' => 'cil', 'ClCG01G012700' => 'cla', 'ClCG01G012720' => 'cla', 'ClCG01G021920' => 'cla', 'ClCG02G008870' => 'cla', 'ClCG02G020840' => 'cla', 'ClCG02G021930' => 'cla', 'COL.COLO4_19302' => 'col', 'COL.COLO4_25262' => 'col', 'COL.COLO4_31788' => 'col', 'Cpa.g.c34684' => 'cpa', 'Cpa.g.c36520.1' => 'cpa', 'Cpa.g.c45626' => 'cpa', 'Cpa.g.sc121.17' => 'cpa', 'Cpa.g.sc13.22' => 'cpa', 'Cpa.g.sc87.88' => 'cpa', 'Cre06.g261800' => 'cre', 'CsaV3_1G014500' => 'csa', 'CsaV3_1G014510' => 'csa', 'CsaV3_2G034880' => 'csa', 'CsaV3_6G014760' => 'csa', 'CsaV3_6G021500' => 'csa', 'CsaV3_6G048980' => 'csa', 'CSS0002511' => 'camsi', 'CSS0007556' => 'camsi', 'CSS0008532' => 'camsi', 'CSS0009709' => 'camsi', 'CSS0010486' => 'camsi', 'CSS0016768' => 'camsi', 'CSS0023512' => 'camsi', 'CSS0025341' => 'camsi', 'CSS0027999' => 'camsi', 'CSS0028944' => 'camsi', 'CSS0032292' => 'camsi', 'CSS0032464' => 'camsi', 'CSS0037153' => 'camsi', 'CSS0039256' => 'camsi', 'CSS0048392' => 'camsi', 'CSS0050458' => 'camsi', 'DCAR_004224' => 'dca', 'DCAR_006147' => 'dca', 'DCAR_006465' => 'dca', 'DCAR_008159' => 'dca', 'DCAR_012164' => 'dca', 'DCAR_019764' => 'dca', 'Dinv05418' => 'din', 'Dinv10839' => 'din', 'Dinv12521' => 'din', 'Dinv13900' => 'din', 'Dinv29426' => 'din', 'Duzib150G0263' => 'dzi', 'Duzib168G1178' => 'dzi', 'Duzib168G1924' => 'dzi', 'Duzib170G0299' => 'dzi', 'Duzib170G0813' => 'dzi', 'Duzib235G1128' => 'dzi', 'Duzib248G1060' => 'dzi', 'ECA232G1910' => 'eca', 'ECA233G4621' => 'eca', 'ECA238G1216' => 'eca', 'ECA238G1784' => 'eca', 'ECA248G1242' => 'eca', 'EL10Ac8g20071' => 'bvu', 'EL10Ac9g21086' => 'bvu', 'EL10Ac9g22407' => 'bvu', 'EL10Ac9g22412' => 'bvu', 'Eucgr.A01119' => 'egr', 'Eucgr.E04043' => 'egr', 'Eucgr.J00428' => 'egr', 'Eucgr.J00958' => 'egr', 'FAN11G3091' => 'fan', 'FAN11G3651' => 'fan', 'FAN16G2566' => 'fan', 'FAN21G3155' => 'fan', 'FAN21G3400' => 'fan', 'FAN21G3543' => 'fan', 'FAN25G0234' => 'fan', 'FAN25G1422' => 'fan', 'FAN25G3392' => 'fan', 'FvH4_3g01940' => 'fve', 'FvH4_3g29870' => 'fve', 'FvH4_3g33680' => 'fve', 'Glyma.09G004200' => 'gma', 'Glyma.11G151288' => 'gma', 'Glyma.11G189100' => 'gma', 'Glyma.12G072500' => 'gma', 'Glyma.12G085500' => 'gma', 'Glyma.12G181800' => 'gma', 'Glyma.12G193000' => 'gma', 'Glyma.13G309300' => 'gma', 'Glyma.13G319000' => 'gma', 'Glyma.17G012600' => 'gma', 'Gohir.A06G148600' => 'ghi', 'Gohir.A07G115800' => 'ghi', 'Gohir.A08G003600' => 'ghi', 'Gohir.A09G093300' => 'ghi', 'Gohir.A09G105400' => 'ghi', 'Gohir.A09G105500' => 'ghi', 'Gohir.D06G154600' => 'ghi', 'Gohir.D07G120200' => 'ghi', 'Gohir.D08G013900' => 'ghi', 'Gohir.D09G093100' => 'ghi', 'Gohir.D09G102200' => 'ghi', 'Gohir.D09G102300' => 'ghi', 'Gorai.001G129400' => 'gra', 'Gorai.004G008200' => 'gra', 'Gorai.006G109800' => 'gra', 'Gorai.006G119500' => 'gra', 'Gorai.006G121300' => 'gra', 'Gorai.010G180700' => 'gra', 'GSVIVG01012716001' => 'vvi', 'GSVIVG01025118001' => 'vvi', 'GSVIVG01030439001' => 'vvi', 'GSVIVG01031397001' => 'vvi', 'HanXRQChr01g0004201' => 'han', 'HanXRQChr02g0054941' => 'han', 'HanXRQChr05g0141811' => 'han', 'HanXRQChr07g0197751' => 'han', 'HanXRQChr11g0346691' => 'han', 'HanXRQChr13g0396971' => 'han', 'HanXRQChr14g0432951' => 'han', 'HanXRQChr14g0452001' => 'han', 'HanXRQChr15g0496681' => 'han', 'HanXRQChr17g0557491' => 'han', 'HanXRQChr17g0557501' => 'han', 'Haze_06809' => 'cav', 'Haze_12852' => 'cav', 'Haze_15850' => 'cav', 'Haze_23446' => 'cav', 'Haze_23942' => 'cav', 'Haze_23943' => 'cav', 'Hma1.2p1_0091F.1_g046450' => 'hma', 'Hma1.2p1_0128F.1_g059910' => 'hma', 'Hma1.2p1_0249F.1_g102260' => 'hma', 'Hma1.2p1_0453F.1_g156190' => 'hma', 'Hma1.2p1_0695F.1_g204380' => 'hma', 'Hma1.2p1_0749F.1_g212650' => 'hma', 'Hma1.2p1_2156F.1_g315420' => 'hma', 'Hma1.2p1_2686F.1_g326940' => 'hma', 'HPP92_006428' => 'vpl', 'HPP92_012069' => 'vpl', 'HPP92_014129' => 'vpl', 'HPP92_014133' => 'vpl', 'HPP92_017315' => 'vpl', 'HPP92_026445' => 'vpl', 'HPP92_026446' => 'vpl', 'Hund00774' => 'sun', 'Hund07682' => 'sun', 'Hund21413' => 'sun', 'Hund23462' => 'sun', 'Hund23463' => 'sun', 'Lalb_Chr03g0027911' => 'lal', 'Lalb_Chr13g0304271' => 'lal', 'Lalb_Chr19g0137471' => 'lal', 'Lalb_Chr22g0350651' => 'lal', 'Lalb_Chr24g0395151' => 'lal', 'Lj1A1231T40' => 'lonja', 'Lj1A221T48' => 'lonja', 'Lj1C924T12' => 'lonja', 'Lj2C993G6' => 'lonja', 'Lj3g0005790' => 'lja', 'Lj3g0015432' => 'lja', 'Lj3g0017722' => 'lja', 'Lj3g0018497' => 'lja', 'Lj4g0025071' => 'lja', 'Lsat_1_v5_gn_1_129680' => 'lsa', 'Lsat_1_v5_gn_2_25321' => 'lsa', 'Lsat_1_v5_gn_2_95461' => 'lsa', 'Lsat_1_v5_gn_4_159620' => 'lsa', 'Lsat_1_v5_gn_6_41301' => 'lsa', 'Lsat_1_v5_gn_6_74660' => 'lsa', 'Lsat_1_v5_gn_7_11520' => 'lsa', 'Lsat_1_v5_gn_9_67680' => 'lsa', 'Manes.04G008300' => 'mes', 'Manes.04G008400' => 'mes', 'Manes.04G026500' => 'mes', 'Manes.10G135300' => 'mes', 'Manes.11G157300' => 'mes', 'Manes.12G074000' => 'mes', 'Manes.16G006200' => 'mes', 'Manes.17G026400' => 'mes', 'Mapoly0024s0086' => 'mpo', 'Mapoly0024s0087' => 'mpo', 'Mapoly0071s0057' => 'mpo', 'Mapoly0204s0012' => 'mpo', 'MBI04_g37681_MAGBIO' => 'mbi', 'MBI05_g17779_MAGBIO' => 'mbi', 'MBI12_g31184_MAGBIO' => 'mbi', 'MBI17_g11083_MAGBIO' => 'mbi', 'MBI18_g03883_MAGBIO' => 'mbi', 'MBI18_g28940_MAGBIO' => 'mbi', 'MCO01G690' => 'mco', 'MD03G1109900' => 'mdo', 'MD03G1134800' => 'mdo', 'MD05G1348000' => 'mdo', 'MD10G1322400' => 'mdo', 'MD11G1123300' => 'mdo', 'MD11G1157600' => 'mdo', 'Medtr2g084875' => 'mtr', 'Medtr2g088130' => 'mtr', 'Medtr4g055310' => 'mtr', 'Medtr4g061070' => 'mtr', 'Medtr4g132250' => 'mtr', 'MELO3C004795.2' => 'cme', 'MELO3C004797.2' => 'cme', 'MELO3C007396.2' => 'cme', 'MELO3C019277.2' => 'cme', 'MELO3C021449.2' => 'cme', 'MELO3C025736.2' => 'cme', 'Migut.D02175' => 'egut', 'Migut.H01573' => 'egut', 'Migut.M01327' => 'egut', 'Migut.N02513' => 'egut', 'MSTRG.14638' => 'ama', 'MSTRG.18632' => 'ama', 'MSTRG.7203' => 'ama', 'Nitab4.5_0000533g0140' => 'nta', 'Nitab4.5_0000888g0150' => 'nta', 'Nitab4.5_0001453g0040' => 'nta', 'Nitab4.5_0002827g0090' => 'nta', 'Nitab4.5_0003082g0040' => 'nta', 'Nitab4.5_0007799g0040' => 'nta', 'Nitab4.5_0008983g0010' => 'nta', 'Nitab4.5_0009017g0020' => 'nta', 'Nn1g02132' => 'nnu', 'Nn1g03492' => 'nnu', 'Nn1g03493' => 'nnu', 'Nn1g03494' => 'nnu', 'Nn1g07164' => 'nnu', 'Nn1g07291' => 'nnu', 'Nn2g10655' => 'nnu', 'Nn2g11652' => 'nnu', 'Nn2g14008' => 'nnu', 'Nn3g17476' => 'nnu', 'Nn3g17477' => 'nnu', 'Nn4g22370' => 'nnu', 'Nn4g25255' => 'nnu', 'Nn5g27755' => 'nnu', 'Nn6g34260' => 'nnu', 'Nn6g35041' => 'nnu', 'Oeu005924.1' => 'oeu', 'Oeu008383.1' => 'oeu', 'Oeu014928.1' => 'oeu', 'Oeu019889.1' => 'oeu', 'Oeu022271.1' => 'oeu', 'Oeu025271.1' => 'oeu', 'Oeu036302.1' => 'oeu', 'Oeu044100.1' => 'oeu', 'Os01g0528300' => 'osa', 'Os03g0286200' => 'osa', 'Os04g0406600' => 'osa', 'Os07g0512000' => 'osa', 'Os07g0694600' => 'osa', 'Os08g0411000' => 'osa', 'Os09g0565700' => 'osa', 'Os09g0566050' => 'osa', 'Os10g0523700' => 'osa', 'Peaxi162Scf00002g00514' => 'pax', 'Peaxi162Scf00047g01817' => 'pax', 'Peaxi162Scf00114g00001' => 'pax', 'Peaxi162Scf00147g00613' => 'pax', 'Peaxi162Scf00389g00425' => 'pax', 'PGR042G1139' => 'pgr', 'PGR042G3273' => 'pgr', 'PGR102G2180' => 'pgr', 'PGR119G0234' => 'pgr', 'PGR119G0668' => 'pgr', 'PGSC0003DMG400007122' => 'stu', 'PGSC0003DMG400016478' => 'stu', 'PGSC0003DMG400025374' => 'stu', 'PGSC0003DMG400026536' => 'stu', 'Phvul.003G079600' => 'pvu', 'Phvul.005G115600' => 'pvu', 'Phvul.005G127100' => 'pvu', 'Phvul.006G149500' => 'pvu', 'Phvul.006G149600' => 'pvu', 'Phvul.011G071800' => 'pvu', 'Phvul.011G090400' => 'pvu', 'Potri.004G013400' => 'ptr', 'Potri.004G188100' => 'ptr', 'Potri.008G195500' => 'ptr', 'Potri.009G148800' => 'ptr', 'Potri.011G004700' => 'ptr', 'Pp3c17_22810' => 'ppa', 'Pp3c18_4480' => 'ppa', 'Pp3c19_13030' => 'ppa', 'Pp3c1_33620' => 'ppa', 'Pp3c2_9380' => 'ppa', 'PRCOL_00001023' => 'pco', 'Prupe.3G216300' => 'ppe', 'Prupe.4G019500' => 'ppe', 'Prupe.6G092500' => 'ppe', 'Prupe.6G119200' => 'ppe', 'Psat0s1945g0080' => 'psa', 'Psat0s4167g0040' => 'psa', 'Psat1g185800' => 'psa', 'Psat4g006440' => 'psa', 'Psat4g006480' => 'psa', 'Psat4g168120' => 'psa', 'Psat5g255680' => 'psa', 'Psat5g261760' => 'psa', 'Psat7g222120' => 'psa', 'PSO063G7252' => 'pso', 'PSO170G4778' => 'pso', 'PSO210G2249' => 'pso', 'PSO339G2411' => 'pso', 'PSO339G2457' => 'pso', 'PSO339G2854' => 'pso', 'PSO339G4288' => 'pso', 'PSO339G4615' => 'pso', 'PSO384G2796' => 'pso', 'PSO384G2940' => 'pso', 'PSO384G4227' => 'pso', 'PSO478G1425' => 'pso', 'PSO541G3863' => 'pso', 'PSO675G0507' => 'pso', 'PSO782G0338' => 'pso', 'PSO832G0644' => 'pso', 'QL01p013664' => 'qlo', 'QL01p036598' => 'qlo', 'QL05p072984' => 'qlo', 'QL08p005768' => 'qlo', 'QL08p032743' => 'qlo', 'QL93p0073_0439' => 'qlo', 'QL93p0073_0444' => 'qlo', 'RcHm_v2.0_Chr5g0002851' => 'rch', 'RcHm_v2.0_Chr5g0055201' => 'rch', 'RcHm_v2.0_Chr5g0061191' => 'rch', 'RcHm_v2.0_Chr7g0203231' => 'rch', 'Rhsim01G0208100' => 'rsi', 'Rhsim01G0208200' => 'rsi', 'Rhsim02G0106500' => 'rsi', 'Rhsim03G0107900' => 'rsi', 'Rhsim06G0163400' => 'rsi', 'Rhsim13G0105200' => 'rsi', 'Sabra04G0006300' => 'sbr', 'Sabra04G0127000' => 'sbr', 'Sabra08G0148700' => 'sbr', 'Sabra09G0117400' => 'sbr', 'SalBow1G3326' => 'sbo', 'SalBow3G3228' => 'sbo', 'SalBow6G1634' => 'sbo', 'SalBow6G3603' => 'sbo', 'SalBow6G5266' => 'sbo', 'SalBow7G2265' => 'sbo', 'SalBow8G0850' => 'sbo', 'SalBow8G2592' => 'sbo', 'Sc05g0009240' => 'sci', 'Sc12g0002300' => 'sci', 'Sc21g0000100' => 'sci', 'Sc21g0004720' => 'sci', 'Sed0002949' => 'sed', 'Sed0004114' => 'sed', 'Sed0004306' => 'sed', 'Sed0006172' => 'sed', 'Sed0008413' => 'sed', 'Sed0013809' => 'sed', 'Sed0019556' => 'sed', 'SEGI_03570' => 'sgi', 'SEGI_07859' => 'sgi', 'SEGI_15042' => 'sgi', 'SEGI_16263' => 'sgi', 'SEGI_16552' => 'sgi', 'SEGI_24331' => 'sgi', 'SEGI_27316' => 'sgi', 'SEGI_29521' => 'sgi', 'SEGI_41342' => 'sgi', 'SGA_v2.0_scaffold27G11617' => 'sas', 'SGA_v2.0_scaffold316G48428' => 'sas', 'SGA_v2.0_scaffold49G18261' => 'sas', 'SGA_v2.0_scaffold7G03831' => 'sas', 'SGA_v2.0_scaffold93G28359' => 'sas', 'SHI02210' => 'shi', 'SHI06028' => 'shi', 'SHI06321' => 'shi', 'SMO111G0012' => 'smo', 'SMO228G0080' => 'smo', 'SMO356G0756' => 'smo', 'Solyc02g080620.3' => 'sly', 'Solyc06g074530.1' => 'sly', 'Solyc11g066890.1' => 'sly', 'Solyc11g072520.3' => 'sly', 'Sopen02g025330' => 'spe', 'Sopen06g031000' => 'spe', 'Sopen09g008240' => 'spe', 'Sopen09g025210' => 'spe', 'Sopen11g026600' => 'spe', 'Sopen11g030170' => 'spe', 'Sp1g10420' => 'spa', 'Sp3g06570' => 'spa', 'Sp4g10660' => 'spa', 'Sp5g16460' => 'spa', 'Sp6g22710' => 'spa', 'TAR365G0112' => 'tar', 'TAR369G0717' => 'tar', 'TAR374G0976' => 'tar', 'TAR623G1128' => 'tar', 'TAR626G1937' => 'tar', 'TAR627G0123' => 'tar', 'TAR628G0305' => 'tar', 'TAR636G1176' => 'tar', 'TAR636G2442' => 'tar', 'THA.LOC104800556' => 'tha', 'THA.LOC104809501' => 'tha', 'THA.LOC104815126' => 'tha', 'THA.LOC104815732' => 'tha', 'THA.LOC104823528' => 'tha', 'Thecc.02G365600' => 'tca', 'Thecc.06G222300' => 'tca', 'Thecc.09G261800' => 'tca', 'Thecc.09G291400' => 'tca', 'Thhalv10003028m.g' => 'esa', 'Thhalv10007886m.g' => 'esa', 'Thhalv10016085m.g' => 'esa', 'Thhalv10016681m.g' => 'esa', 'Thhalv10020951m.g' => 'esa', 'TPR.G15598' => 'tpr', 'TPR.G29305' => 'tpr', 'TPR.G32395' => 'tpr', 'TPR.G36998' => 'tpr', 'TPR.G4227' => 'tpr', 'TWI18G1433' => 'twi', 'TWI31G0755' => 'twi', 'TWI38G0912' => 'twi', 'TWI75G1097' => 'twi', 'TWI75G1619' => 'twi', 'TWI79G1336' => 'twi', 'unitig_0.g943' => 'ugi', 'unitig_0.g944' => 'ugi', 'unitig_22.g6646' => 'ugi', 'unitig_37.g12681' => 'ugi', 'unitig_8.g3290' => 'ugi', 'vmacro03278' => 'vma', 'vmacro12197' => 'vma', 'vmacro14478' => 'vma', 'vmacro15787' => 'vma', 'vmacro15789' => 'vma', 'vmacro15790' => 'vma', 'vmacro15806' => 'vma', 'vmacro22907' => 'vma', 'vmacro22908' => 'vma', 'vmacro22909' => 'vma', 'vmacro23108' => 'vma', 'VMungo0540G0540' => 'vmu', 'VMungo0540G2468' => 'vmu', 'VMungo1080G0390' => 'vmu', 'VMungo1080G1165' => 'vmu', 'VMungo1127G0170' => 'vmu', 'VMungo1127G2099' => 'vmu', 'VMungo1215G3013' => 'vmu', 'Zm00001eb013110' => 'zma', 'Zm00001eb084260' => 'zma', 'Zm00001eb096110' => 'zma', 'Zm00001eb217510' => 'zma', 'Zm00001eb322550' => 'zma', 'Zm00001eb390770' => 'zma', 'Zm00001eb397170' => 'zma', 'Zm00001eb404610' => 'zma', 'Zm00001eb421790' => 'zma' ) $gf_id = 'HOM05D000911' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000911' ) $data_identifier = 'HOM05D000911' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 16, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 5, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 6, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 8, 'nnu' => (int) 16, 'oeu' => (int) 8, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 5, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 16, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421790' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000911', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27780' => 'bna', 'A03p35380' => 'bna', 'A04p21160' => 'bna', 'A05p40570' => 'bna', 'A06p26900' => 'bna', 'A08p33230' => 'bna', 'A09p65960' => 'bna', 'A10p18290' => 'bna', 'Aa31LG1G12990' => 'aar', 'Aa31LG1G2980' => 'aar', 'Aa31LG4G14320' => 'aar', 'Aa31LG7G11800' => 'aar', 'Aa31sc36G50' => 'aar', 'Aa31sc36G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3721' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5459' => 'aag', 'Actinidia03028' => 'ach', 'Actinidia03753' => 'ach', 'Actinidia04187' => 'ach', 'Actinidia05509' => 'ach', 'Actinidia24180' => 'ach', 'Actinidia26906' => 'ach', 'Actinidia37097' => 'ach', 'Actinidia38249' => 'ach', 'Ah.01g003470' => 'amhyb', 'Ah.01g004580' => 'amhyb', 'Ah.01g014850' => 'amhyb', 'Ah.01g016830' => 'amhyb', 'Ah.14g088000' => 'amhyb', 'AL1G22980' => 'aly', 'AL3G18990' => 'aly', 'AL4G22440' => 'aly', 'AL4G33180' => 'aly', 'AL5G22920' => 'aly', 'AL6G33660' => 'aly', 'AL8G20720' => 'aly', 'Aqoxy1G00935' => 'aox', 'Aqoxy1G02094' => 'aox', 'Aqoxy2G01239' => 'aox', 'Aqoxy4G01870' => 'aox', 'Aqoxy7G00450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.36ZVTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71EM27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5D6C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH3WRE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3NCM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RIM768' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YB5YRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z36GDV' => 'arhy', 'AT1G08250' => 'ath', 'AT1G11790' => 'ath', 'AT2G27820' => 'ath', 'AT3G07630' => 'ath', 'AT3G44720' => 'ath', 'AT5G22630' => 'ath', 'ATR0693G304' => 'atr', 'ATR0794G109' => 'atr', 'ATR0820G120' => 'atr', 'ATR1159G064' => 'atr', 'Atru.chr10.2239' => 'acertr', 'Atru.chr3.3371' => 'acertr', 'Atru.chr6.3202' => 'acertr', 'AUR62006499' => 'cqu', 'AUR62012718' => 'cqu', 'AUR62021938' => 'cqu', 'AUR62023932' => 'cqu', 'AUR62025034' => 'cqu', 'AUR62025035' => 'cqu', 'AUR62038307' => 'cqu', 'AUR62043466' => 'cqu', 'BcaB02g10748' => 'bca', 'BcaB03g13231' => 'bca', 'BcaB03g14689' => 'bca', 'BcaB05g22716' => 'bca', 'BcaB06g28172' => 'bca', 'BcaB08g36413' => 'bca', 'BcaC01g02186' => 'bca', 'BcaC01g04272' => 'bca', 'BcaC02g08080' => 'bca', 'BcaC02g08227' => 'bca', 'BcaC03g13901' => 'bca', 'BcaC04g19593' => 'bca', 'BcaC04g20874' => 'bca', 'BcaC05g29557' => 'bca', 'BcaC06g35505' => 'bca', 'BcaC07g41954' => 'bca', 'BcaC07g41955' => 'bca', 'BcaC07g41956' => 'bca', 'BcaC07g42519' => 'bca', 'BcaC07g42520' => 'bca', 'BcaC07g42523' => 'bca', 'BcaC07g42524' => 'bca', 'BcaC07g42525' => 'bca', 'BcaC08g47480' => 'bca', 'BcaC08g47481' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00530' => 'bna', 'BolC2t07178H' => 'bol', 'BolC3t16567H' => 'bol', 'BolC4t27234H' => 'bol', 'BolC5t29728H' => 'bol', 'BolC5t34622H' => 'bol', 'BolC6t40321H' => 'bol', 'BolC7t42028H' => 'bol', 'BolC8t49125H' => 'bol', 'BolC8t52538H' => 'bol', 'BolC8t52539H' => 'bol', 'BolC9t56681H' => 'bol', 'BolC9t58266H' => 'bol', 'BolSC21t60294H' => 'bol', 'BraA02t05670Z' => 'bra', 'BraA03t12716Z' => 'bra', 'BraA04t17685Z' => 'bra', 'BraA05t22788Z' => 'bra', 'BraA06t24032Z' => 'bra', 'BraA06t25625Z' => 'bra', 'BraA07t27930Z' => 'bra', 'BraA08t35242Z' => 'bra', 'BraA09t38609Z' => 'bra', 'BraA10t43905Z' => 'bra', 'C02p11060' => 'bna', 'C03p42990' => 'bna', 'C03p67310' => 'bna', 'C04p56990' => 'bna', 'C04p58660' => 'bna', 'C05p09890' => 'bna', 'C05p59680' => 'bna', 'C06p19830' => 'bna', 'C06p53040' => 'bna', 'C07p15230' => 'bna', 'C08p50070' => 'bna', 'C08p50090' => 'bna', 'C09p38330' => 'bna', 'C09p53940' => 'bna', 'CAN.G1014.1' => 'can', 'CAN.G644.30' => 'can', 'CAN.G84.47' => 'can', 'CAN.G919.8' => 'can', 'CANSAT54G0113' => 'cansat', 'CANSAT54G1286' => 'cansat', 'CANSAT64G1020' => 'cansat', 'CARHR008080' => 'chi', 'CARHR008090' => 'chi', 'CARHR012130' => 'chi', 'CARHR038390' => 'chi', 'CARHR082330' => 'chi', 'CARHR120520' => 'chi', 'CARHR151470' => 'chi', 'CARHR190950' => 'chi', 'Carub.0001s0760' => 'cru', 'Carub.0001s1146' => 'cru', 'Carub.0003s0721' => 'cru', 'Carub.0004s0858' => 'cru', 'Carub.0005s1040' => 'cru', 'Carub.0006s2035' => 'cru', 'Carub.0015s0005' => 'cru', 'Ca_01607_v3' => 'car', 'Ca_01677_v3' => 'car', 'Ca_06087_v3' => 'car', 'Ca_19238_v3' => 'car', 'Ca_19373_v3' => 'car', 'Ca_21079_v3' => 'car', 'CBR_g54016' => 'cbr', 'CBR_g54018' => 'cbr', 'CBR_g54020' => 'cbr', 'Cc01_g09780' => 'ccan', 'Cc01_g11680' => 'ccan', 'Cc02_g15610' => 'ccan', 'Cc05_g04350' => 'ccan', 'Cc09_g01580' => 'ccan', 'CDE01G0795' => 'cde', 'CDE02G2024' => 'cde', 'CDE02G2260' => 'cde', 'CDE02G4561' => 'cde', 'CDE05G2733' => 'cde', 'CDE05G3422' => 'cde', 'CDE06G2003' => 'cde', 'CDE08G0576' => 'cde', 'CDE09G0048' => 'cde', 'CDE11G0805' => 'cde', 'Cfa003644' => 'cfa', 'Cfa006290' => 'cfa', 'Cfa010080' => 'cfa', 'Cfa011376' => 'cfa', 'Cfa011576' => 'cfa', 'Cfa011577' => 'cfa', 'Cfa014389' => 'cfa', 'Ciclev10006044m.g' => 'ccl', 'Ciclev10006954m.g' => 'ccl', 'Ciclev10015131m.g' => 'ccl', 'Ciclev10015580m.g' => 'ccl', 'Ciclev10028359m.g' => 'ccl', 'Ciclev10028573m.g' => 'ccl', 'CiPaw.03G159300' => 'cil', 'CiPaw.04G115100' => 'cil', 'CiPaw.09G092800' => 'cil', 'CiPaw.10G071800' => 'cil', 'CiPaw.13G105800' => 'cil', 'CiPaw.13G141000' => 'cil', 'CiPaw.14G103400' => 'cil', 'ClCG01G012700' => 'cla', 'ClCG01G012720' => 'cla', 'ClCG01G021920' => 'cla', 'ClCG02G008870' => 'cla', 'ClCG02G020840' => 'cla', 'ClCG02G021930' => 'cla', 'COL.COLO4_19302' => 'col', 'COL.COLO4_25262' => 'col', 'COL.COLO4_31788' => 'col', 'Cpa.g.c34684' => 'cpa', 'Cpa.g.c36520.1' => 'cpa', 'Cpa.g.c45626' => 'cpa', 'Cpa.g.sc121.17' => 'cpa', 'Cpa.g.sc13.22' => 'cpa', 'Cpa.g.sc87.88' => 'cpa', 'Cre06.g261800' => 'cre', 'CsaV3_1G014500' => 'csa', 'CsaV3_1G014510' => 'csa', 'CsaV3_2G034880' => 'csa', 'CsaV3_6G014760' => 'csa', 'CsaV3_6G021500' => 'csa', 'CsaV3_6G048980' => 'csa', 'CSS0002511' => 'camsi', 'CSS0007556' => 'camsi', 'CSS0008532' => 'camsi', 'CSS0009709' => 'camsi', 'CSS0010486' => 'camsi', 'CSS0016768' => 'camsi', 'CSS0023512' => 'camsi', 'CSS0025341' => 'camsi', 'CSS0027999' => 'camsi', 'CSS0028944' => 'camsi', 'CSS0032292' => 'camsi', 'CSS0032464' => 'camsi', 'CSS0037153' => 'camsi', 'CSS0039256' => 'camsi', 'CSS0048392' => 'camsi', 'CSS0050458' => 'camsi', 'DCAR_004224' => 'dca', 'DCAR_006147' => 'dca', 'DCAR_006465' => 'dca', 'DCAR_008159' => 'dca', 'DCAR_012164' => 'dca', 'DCAR_019764' => 'dca', 'Dinv05418' => 'din', 'Dinv10839' => 'din', 'Dinv12521' => 'din', 'Dinv13900' => 'din', 'Dinv29426' => 'din', 'Duzib150G0263' => 'dzi', 'Duzib168G1178' => 'dzi', 'Duzib168G1924' => 'dzi', 'Duzib170G0299' => 'dzi', 'Duzib170G0813' => 'dzi', 'Duzib235G1128' => 'dzi', 'Duzib248G1060' => 'dzi', 'ECA232G1910' => 'eca', 'ECA233G4621' => 'eca', 'ECA238G1216' => 'eca', 'ECA238G1784' => 'eca', 'ECA248G1242' => 'eca', 'EL10Ac8g20071' => 'bvu', 'EL10Ac9g21086' => 'bvu', 'EL10Ac9g22407' => 'bvu', 'EL10Ac9g22412' => 'bvu', 'Eucgr.A01119' => 'egr', 'Eucgr.E04043' => 'egr', 'Eucgr.J00428' => 'egr', 'Eucgr.J00958' => 'egr', 'FAN11G3091' => 'fan', 'FAN11G3651' => 'fan', 'FAN16G2566' => 'fan', 'FAN21G3155' => 'fan', 'FAN21G3400' => 'fan', 'FAN21G3543' => 'fan', 'FAN25G0234' => 'fan', 'FAN25G1422' => 'fan', 'FAN25G3392' => 'fan', 'FvH4_3g01940' => 'fve', 'FvH4_3g29870' => 'fve', 'FvH4_3g33680' => 'fve', 'Glyma.09G004200' => 'gma', 'Glyma.11G151288' => 'gma', 'Glyma.11G189100' => 'gma', 'Glyma.12G072500' => 'gma', 'Glyma.12G085500' => 'gma', 'Glyma.12G181800' => 'gma', 'Glyma.12G193000' => 'gma', 'Glyma.13G309300' => 'gma', 'Glyma.13G319000' => 'gma', 'Glyma.17G012600' => 'gma', 'Gohir.A06G148600' => 'ghi', 'Gohir.A07G115800' => 'ghi', 'Gohir.A08G003600' => 'ghi', 'Gohir.A09G093300' => 'ghi', 'Gohir.A09G105400' => 'ghi', 'Gohir.A09G105500' => 'ghi', 'Gohir.D06G154600' => 'ghi', 'Gohir.D07G120200' => 'ghi', 'Gohir.D08G013900' => 'ghi', 'Gohir.D09G093100' => 'ghi', 'Gohir.D09G102200' => 'ghi', 'Gohir.D09G102300' => 'ghi', 'Gorai.001G129400' => 'gra', 'Gorai.004G008200' => 'gra', 'Gorai.006G109800' => 'gra', 'Gorai.006G119500' => 'gra', 'Gorai.006G121300' => 'gra', 'Gorai.010G180700' => 'gra', 'GSVIVG01012716001' => 'vvi', 'GSVIVG01025118001' => 'vvi', 'GSVIVG01030439001' => 'vvi', 'GSVIVG01031397001' => 'vvi', 'HanXRQChr01g0004201' => 'han', 'HanXRQChr02g0054941' => 'han', 'HanXRQChr05g0141811' => 'han', 'HanXRQChr07g0197751' => 'han', 'HanXRQChr11g0346691' => 'han', 'HanXRQChr13g0396971' => 'han', 'HanXRQChr14g0432951' => 'han', 'HanXRQChr14g0452001' => 'han', 'HanXRQChr15g0496681' => 'han', 'HanXRQChr17g0557491' => 'han', 'HanXRQChr17g0557501' => 'han', 'Haze_06809' => 'cav', 'Haze_12852' => 'cav', 'Haze_15850' => 'cav', 'Haze_23446' => 'cav', 'Haze_23942' => 'cav', 'Haze_23943' => 'cav', 'Hma1.2p1_0091F.1_g046450' => 'hma', 'Hma1.2p1_0128F.1_g059910' => 'hma', 'Hma1.2p1_0249F.1_g102260' => 'hma', 'Hma1.2p1_0453F.1_g156190' => 'hma', 'Hma1.2p1_0695F.1_g204380' => 'hma', 'Hma1.2p1_0749F.1_g212650' => 'hma', 'Hma1.2p1_2156F.1_g315420' => 'hma', 'Hma1.2p1_2686F.1_g326940' => 'hma', 'HPP92_006428' => 'vpl', 'HPP92_012069' => 'vpl', 'HPP92_014129' => 'vpl', 'HPP92_014133' => 'vpl', 'HPP92_017315' => 'vpl', 'HPP92_026445' => 'vpl', 'HPP92_026446' => 'vpl', 'Hund00774' => 'sun', 'Hund07682' => 'sun', 'Hund21413' => 'sun', 'Hund23462' => 'sun', 'Hund23463' => 'sun', 'Lalb_Chr03g0027911' => 'lal', 'Lalb_Chr13g0304271' => 'lal', 'Lalb_Chr19g0137471' => 'lal', 'Lalb_Chr22g0350651' => 'lal', 'Lalb_Chr24g0395151' => 'lal', 'Lj1A1231T40' => 'lonja', 'Lj1A221T48' => 'lonja', 'Lj1C924T12' => 'lonja', 'Lj2C993G6' => 'lonja', 'Lj3g0005790' => 'lja', 'Lj3g0015432' => 'lja', 'Lj3g0017722' => 'lja', 'Lj3g0018497' => 'lja', 'Lj4g0025071' => 'lja', 'Lsat_1_v5_gn_1_129680' => 'lsa', 'Lsat_1_v5_gn_2_25321' => 'lsa', 'Lsat_1_v5_gn_2_95461' => 'lsa', 'Lsat_1_v5_gn_4_159620' => 'lsa', 'Lsat_1_v5_gn_6_41301' => 'lsa', 'Lsat_1_v5_gn_6_74660' => 'lsa', 'Lsat_1_v5_gn_7_11520' => 'lsa', 'Lsat_1_v5_gn_9_67680' => 'lsa', 'Manes.04G008300' => 'mes', 'Manes.04G008400' => 'mes', 'Manes.04G026500' => 'mes', 'Manes.10G135300' => 'mes', 'Manes.11G157300' => 'mes', 'Manes.12G074000' => 'mes', 'Manes.16G006200' => 'mes', 'Manes.17G026400' => 'mes', 'Mapoly0024s0086' => 'mpo', 'Mapoly0024s0087' => 'mpo', 'Mapoly0071s0057' => 'mpo', 'Mapoly0204s0012' => 'mpo', 'MBI04_g37681_MAGBIO' => 'mbi', 'MBI05_g17779_MAGBIO' => 'mbi', 'MBI12_g31184_MAGBIO' => 'mbi', 'MBI17_g11083_MAGBIO' => 'mbi', 'MBI18_g03883_MAGBIO' => 'mbi', 'MBI18_g28940_MAGBIO' => 'mbi', 'MCO01G690' => 'mco', 'MD03G1109900' => 'mdo', 'MD03G1134800' => 'mdo', 'MD05G1348000' => 'mdo', 'MD10G1322400' => 'mdo', 'MD11G1123300' => 'mdo', 'MD11G1157600' => 'mdo', 'Medtr2g084875' => 'mtr', 'Medtr2g088130' => 'mtr', 'Medtr4g055310' => 'mtr', 'Medtr4g061070' => 'mtr', 'Medtr4g132250' => 'mtr', 'MELO3C004795.2' => 'cme', 'MELO3C004797.2' => 'cme', 'MELO3C007396.2' => 'cme', 'MELO3C019277.2' => 'cme', 'MELO3C021449.2' => 'cme', 'MELO3C025736.2' => 'cme', 'Migut.D02175' => 'egut', 'Migut.H01573' => 'egut', 'Migut.M01327' => 'egut', 'Migut.N02513' => 'egut', 'MSTRG.14638' => 'ama', 'MSTRG.18632' => 'ama', 'MSTRG.7203' => 'ama', 'Nitab4.5_0000533g0140' => 'nta', 'Nitab4.5_0000888g0150' => 'nta', 'Nitab4.5_0001453g0040' => 'nta', 'Nitab4.5_0002827g0090' => 'nta', 'Nitab4.5_0003082g0040' => 'nta', 'Nitab4.5_0007799g0040' => 'nta', 'Nitab4.5_0008983g0010' => 'nta', 'Nitab4.5_0009017g0020' => 'nta', 'Nn1g02132' => 'nnu', 'Nn1g03492' => 'nnu', 'Nn1g03493' => 'nnu', 'Nn1g03494' => 'nnu', 'Nn1g07164' => 'nnu', 'Nn1g07291' => 'nnu', 'Nn2g10655' => 'nnu', 'Nn2g11652' => 'nnu', 'Nn2g14008' => 'nnu', 'Nn3g17476' => 'nnu', 'Nn3g17477' => 'nnu', 'Nn4g22370' => 'nnu', 'Nn4g25255' => 'nnu', 'Nn5g27755' => 'nnu', 'Nn6g34260' => 'nnu', 'Nn6g35041' => 'nnu', 'Oeu005924.1' => 'oeu', 'Oeu008383.1' => 'oeu', 'Oeu014928.1' => 'oeu', 'Oeu019889.1' => 'oeu', 'Oeu022271.1' => 'oeu', 'Oeu025271.1' => 'oeu', 'Oeu036302.1' => 'oeu', 'Oeu044100.1' => 'oeu', 'Os01g0528300' => 'osa', 'Os03g0286200' => 'osa', 'Os04g0406600' => 'osa', 'Os07g0512000' => 'osa', 'Os07g0694600' => 'osa', 'Os08g0411000' => 'osa', 'Os09g0565700' => 'osa', 'Os09g0566050' => 'osa', 'Os10g0523700' => 'osa', 'Peaxi162Scf00002g00514' => 'pax', 'Peaxi162Scf00047g01817' => 'pax', 'Peaxi162Scf00114g00001' => 'pax', 'Peaxi162Scf00147g00613' => 'pax', 'Peaxi162Scf00389g00425' => 'pax', 'PGR042G1139' => 'pgr', 'PGR042G3273' => 'pgr', 'PGR102G2180' => 'pgr', 'PGR119G0234' => 'pgr', 'PGR119G0668' => 'pgr', 'PGSC0003DMG400007122' => 'stu', 'PGSC0003DMG400016478' => 'stu', 'PGSC0003DMG400025374' => 'stu', 'PGSC0003DMG400026536' => 'stu', 'Phvul.003G079600' => 'pvu', 'Phvul.005G115600' => 'pvu', 'Phvul.005G127100' => 'pvu', 'Phvul.006G149500' => 'pvu', 'Phvul.006G149600' => 'pvu', 'Phvul.011G071800' => 'pvu', 'Phvul.011G090400' => 'pvu', 'Potri.004G013400' => 'ptr', 'Potri.004G188100' => 'ptr', 'Potri.008G195500' => 'ptr', 'Potri.009G148800' => 'ptr', 'Potri.011G004700' => 'ptr', 'Pp3c17_22810' => 'ppa', 'Pp3c18_4480' => 'ppa', 'Pp3c19_13030' => 'ppa', 'Pp3c1_33620' => 'ppa', 'Pp3c2_9380' => 'ppa', 'PRCOL_00001023' => 'pco', 'Prupe.3G216300' => 'ppe', 'Prupe.4G019500' => 'ppe', 'Prupe.6G092500' => 'ppe', 'Prupe.6G119200' => 'ppe', 'Psat0s1945g0080' => 'psa', 'Psat0s4167g0040' => 'psa', 'Psat1g185800' => 'psa', 'Psat4g006440' => 'psa', 'Psat4g006480' => 'psa', 'Psat4g168120' => 'psa', 'Psat5g255680' => 'psa', 'Psat5g261760' => 'psa', 'Psat7g222120' => 'psa', 'PSO063G7252' => 'pso', 'PSO170G4778' => 'pso', 'PSO210G2249' => 'pso', 'PSO339G2411' => 'pso', 'PSO339G2457' => 'pso', 'PSO339G2854' => 'pso', 'PSO339G4288' => 'pso', 'PSO339G4615' => 'pso', 'PSO384G2796' => 'pso', 'PSO384G2940' => 'pso', 'PSO384G4227' => 'pso', 'PSO478G1425' => 'pso', 'PSO541G3863' => 'pso', 'PSO675G0507' => 'pso', 'PSO782G0338' => 'pso', 'PSO832G0644' => 'pso', 'QL01p013664' => 'qlo', 'QL01p036598' => 'qlo', 'QL05p072984' => 'qlo', 'QL08p005768' => 'qlo', 'QL08p032743' => 'qlo', 'QL93p0073_0439' => 'qlo', 'QL93p0073_0444' => 'qlo', 'RcHm_v2.0_Chr5g0002851' => 'rch', 'RcHm_v2.0_Chr5g0055201' => 'rch', 'RcHm_v2.0_Chr5g0061191' => 'rch', 'RcHm_v2.0_Chr7g0203231' => 'rch', 'Rhsim01G0208100' => 'rsi', 'Rhsim01G0208200' => 'rsi', 'Rhsim02G0106500' => 'rsi', 'Rhsim03G0107900' => 'rsi', 'Rhsim06G0163400' => 'rsi', 'Rhsim13G0105200' => 'rsi', 'Sabra04G0006300' => 'sbr', 'Sabra04G0127000' => 'sbr', 'Sabra08G0148700' => 'sbr', 'Sabra09G0117400' => 'sbr', 'SalBow1G3326' => 'sbo', 'SalBow3G3228' => 'sbo', 'SalBow6G1634' => 'sbo', 'SalBow6G3603' => 'sbo', 'SalBow6G5266' => 'sbo', 'SalBow7G2265' => 'sbo', 'SalBow8G0850' => 'sbo', 'SalBow8G2592' => 'sbo', 'Sc05g0009240' => 'sci', 'Sc12g0002300' => 'sci', 'Sc21g0000100' => 'sci', 'Sc21g0004720' => 'sci', 'Sed0002949' => 'sed', 'Sed0004114' => 'sed', 'Sed0004306' => 'sed', 'Sed0006172' => 'sed', 'Sed0008413' => 'sed', 'Sed0013809' => 'sed', 'Sed0019556' => 'sed', 'SEGI_03570' => 'sgi', 'SEGI_07859' => 'sgi', 'SEGI_15042' => 'sgi', 'SEGI_16263' => 'sgi', 'SEGI_16552' => 'sgi', 'SEGI_24331' => 'sgi', 'SEGI_27316' => 'sgi', 'SEGI_29521' => 'sgi', 'SEGI_41342' => 'sgi', 'SGA_v2.0_scaffold27G11617' => 'sas', 'SGA_v2.0_scaffold316G48428' => 'sas', 'SGA_v2.0_scaffold49G18261' => 'sas', 'SGA_v2.0_scaffold7G03831' => 'sas', 'SGA_v2.0_scaffold93G28359' => 'sas', 'SHI02210' => 'shi', 'SHI06028' => 'shi', 'SHI06321' => 'shi', 'SMO111G0012' => 'smo', 'SMO228G0080' => 'smo', 'SMO356G0756' => 'smo', 'Solyc02g080620.3' => 'sly', 'Solyc06g074530.1' => 'sly', 'Solyc11g066890.1' => 'sly', 'Solyc11g072520.3' => 'sly', 'Sopen02g025330' => 'spe', 'Sopen06g031000' => 'spe', 'Sopen09g008240' => 'spe', 'Sopen09g025210' => 'spe', 'Sopen11g026600' => 'spe', 'Sopen11g030170' => 'spe', 'Sp1g10420' => 'spa', 'Sp3g06570' => 'spa', 'Sp4g10660' => 'spa', 'Sp5g16460' => 'spa', 'Sp6g22710' => 'spa', 'TAR365G0112' => 'tar', 'TAR369G0717' => 'tar', 'TAR374G0976' => 'tar', 'TAR623G1128' => 'tar', 'TAR626G1937' => 'tar', 'TAR627G0123' => 'tar', 'TAR628G0305' => 'tar', 'TAR636G1176' => 'tar', 'TAR636G2442' => 'tar', 'THA.LOC104800556' => 'tha', 'THA.LOC104809501' => 'tha', 'THA.LOC104815126' => 'tha', 'THA.LOC104815732' => 'tha', 'THA.LOC104823528' => 'tha', 'Thecc.02G365600' => 'tca', 'Thecc.06G222300' => 'tca', 'Thecc.09G261800' => 'tca', 'Thecc.09G291400' => 'tca', 'Thhalv10003028m.g' => 'esa', 'Thhalv10007886m.g' => 'esa', 'Thhalv10016085m.g' => 'esa', 'Thhalv10016681m.g' => 'esa', 'Thhalv10020951m.g' => 'esa', 'TPR.G15598' => 'tpr', 'TPR.G29305' => 'tpr', 'TPR.G32395' => 'tpr', 'TPR.G36998' => 'tpr', 'TPR.G4227' => 'tpr', 'TWI18G1433' => 'twi', 'TWI31G0755' => 'twi', 'TWI38G0912' => 'twi', 'TWI75G1097' => 'twi', 'TWI75G1619' => 'twi', 'TWI79G1336' => 'twi', 'unitig_0.g943' => 'ugi', 'unitig_0.g944' => 'ugi', 'unitig_22.g6646' => 'ugi', 'unitig_37.g12681' => 'ugi', 'unitig_8.g3290' => 'ugi', 'vmacro03278' => 'vma', 'vmacro12197' => 'vma', 'vmacro14478' => 'vma', 'vmacro15787' => 'vma', 'vmacro15789' => 'vma', 'vmacro15790' => 'vma', 'vmacro15806' => 'vma', 'vmacro22907' => 'vma', 'vmacro22908' => 'vma', 'vmacro22909' => 'vma', 'vmacro23108' => 'vma', 'VMungo0540G0540' => 'vmu', 'VMungo0540G2468' => 'vmu', 'VMungo1080G0390' => 'vmu', 'VMungo1080G1165' => 'vmu', 'VMungo1127G0170' => 'vmu', 'VMungo1127G2099' => 'vmu', 'VMungo1215G3013' => 'vmu', 'Zm00001eb013110' => 'zma', 'Zm00001eb084260' => 'zma', 'Zm00001eb096110' => 'zma', 'Zm00001eb217510' => 'zma', 'Zm00001eb322550' => 'zma', 'Zm00001eb390770' => 'zma', 'Zm00001eb397170' => 'zma', 'Zm00001eb404610' => 'zma', 'Zm00001eb421790' => 'zma' ), 'gf_id' => 'HOM05D000911', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000911' ), 'data_identifier' => 'HOM05D000911', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000911', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27780' => 'bna', 'A03p35380' => 'bna', 'A04p21160' => 'bna', 'A05p40570' => 'bna', 'A06p26900' => 'bna', 'A08p33230' => 'bna', 'A09p65960' => 'bna', 'A10p18290' => 'bna', 'Aa31LG1G12990' => 'aar', 'Aa31LG1G2980' => 'aar', 'Aa31LG4G14320' => 'aar', 'Aa31LG7G11800' => 'aar', 'Aa31sc36G50' => 'aar', 'Aa31sc36G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3721' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5459' => 'aag', 'Actinidia03028' => 'ach', 'Actinidia03753' => 'ach', 'Actinidia04187' => 'ach', 'Actinidia05509' => 'ach', 'Actinidia24180' => 'ach', 'Actinidia26906' => 'ach', 'Actinidia37097' => 'ach', 'Actinidia38249' => 'ach', 'Ah.01g003470' => 'amhyb', 'Ah.01g004580' => 'amhyb', 'Ah.01g014850' => 'amhyb', 'Ah.01g016830' => 'amhyb', 'Ah.14g088000' => 'amhyb', 'AL1G22980' => 'aly', 'AL3G18990' => 'aly', 'AL4G22440' => 'aly', 'AL4G33180' => 'aly', 'AL5G22920' => 'aly', 'AL6G33660' => 'aly', 'AL8G20720' => 'aly', 'Aqoxy1G00935' => 'aox', 'Aqoxy1G02094' => 'aox', 'Aqoxy2G01239' => 'aox', 'Aqoxy4G01870' => 'aox', 'Aqoxy7G00450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.36ZVTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71EM27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5D6C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH3WRE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3NCM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RIM768' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YB5YRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z36GDV' => 'arhy', 'AT1G08250' => 'ath', 'AT1G11790' => 'ath', 'AT2G27820' => 'ath', 'AT3G07630' => 'ath', 'AT3G44720' => 'ath', 'AT5G22630' => 'ath', 'ATR0693G304' => 'atr', 'ATR0794G109' => 'atr', 'ATR0820G120' => 'atr', 'ATR1159G064' => 'atr', 'Atru.chr10.2239' => 'acertr', 'Atru.chr3.3371' => 'acertr', 'Atru.chr6.3202' => 'acertr', 'AUR62006499' => 'cqu', 'AUR62012718' => 'cqu', 'AUR62021938' => 'cqu', 'AUR62023932' => 'cqu', 'AUR62025034' => 'cqu', 'AUR62025035' => 'cqu', 'AUR62038307' => 'cqu', 'AUR62043466' => 'cqu', 'BcaB02g10748' => 'bca', 'BcaB03g13231' => 'bca', 'BcaB03g14689' => 'bca', 'BcaB05g22716' => 'bca', 'BcaB06g28172' => 'bca', 'BcaB08g36413' => 'bca', 'BcaC01g02186' => 'bca', 'BcaC01g04272' => 'bca', 'BcaC02g08080' => 'bca', 'BcaC02g08227' => 'bca', 'BcaC03g13901' => 'bca', 'BcaC04g19593' => 'bca', 'BcaC04g20874' => 'bca', 'BcaC05g29557' => 'bca', 'BcaC06g35505' => 'bca', 'BcaC07g41954' => 'bca', 'BcaC07g41955' => 'bca', 'BcaC07g41956' => 'bca', 'BcaC07g42519' => 'bca', 'BcaC07g42520' => 'bca', 'BcaC07g42523' => 'bca', 'BcaC07g42524' => 'bca', 'BcaC07g42525' => 'bca', 'BcaC08g47480' => 'bca', 'BcaC08g47481' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00530' => 'bna', 'BolC2t07178H' => 'bol', 'BolC3t16567H' => 'bol', 'BolC4t27234H' => 'bol', 'BolC5t29728H' => 'bol', 'BolC5t34622H' => 'bol', 'BolC6t40321H' => 'bol', 'BolC7t42028H' => 'bol', 'BolC8t49125H' => 'bol', 'BolC8t52538H' => 'bol', 'BolC8t52539H' => 'bol', 'BolC9t56681H' => 'bol', 'BolC9t58266H' => 'bol', 'BolSC21t60294H' => 'bol', 'BraA02t05670Z' => 'bra', 'BraA03t12716Z' => 'bra', 'BraA04t17685Z' => 'bra', 'BraA05t22788Z' => 'bra', 'BraA06t24032Z' => 'bra', 'BraA06t25625Z' => 'bra', 'BraA07t27930Z' => 'bra', 'BraA08t35242Z' => 'bra', 'BraA09t38609Z' => 'bra', 'BraA10t43905Z' => 'bra', 'C02p11060' => 'bna', 'C03p42990' => 'bna', 'C03p67310' => 'bna', 'C04p56990' => 'bna', 'C04p58660' => 'bna', 'C05p09890' => 'bna', 'C05p59680' => 'bna', 'C06p19830' => 'bna', 'C06p53040' => 'bna', 'C07p15230' => 'bna', 'C08p50070' => 'bna', 'C08p50090' => 'bna', 'C09p38330' => 'bna', 'C09p53940' => 'bna', 'CAN.G1014.1' => 'can', 'CAN.G644.30' => 'can', 'CAN.G84.47' => 'can', 'CAN.G919.8' => 'can', 'CANSAT54G0113' => 'cansat', 'CANSAT54G1286' => 'cansat', 'CANSAT64G1020' => 'cansat', 'CARHR008080' => 'chi', 'CARHR008090' => 'chi', 'CARHR012130' => 'chi', 'CARHR038390' => 'chi', 'CARHR082330' => 'chi', 'CARHR120520' => 'chi', 'CARHR151470' => 'chi', 'CARHR190950' => 'chi', 'Carub.0001s0760' => 'cru', 'Carub.0001s1146' => 'cru', 'Carub.0003s0721' => 'cru', 'Carub.0004s0858' => 'cru', 'Carub.0005s1040' => 'cru', 'Carub.0006s2035' => 'cru', 'Carub.0015s0005' => 'cru', 'Ca_01607_v3' => 'car', 'Ca_01677_v3' => 'car', 'Ca_06087_v3' => 'car', 'Ca_19238_v3' => 'car', 'Ca_19373_v3' => 'car', 'Ca_21079_v3' => 'car', 'CBR_g54016' => 'cbr', 'CBR_g54018' => 'cbr', 'CBR_g54020' => 'cbr', 'Cc01_g09780' => 'ccan', 'Cc01_g11680' => 'ccan', 'Cc02_g15610' => 'ccan', 'Cc05_g04350' => 'ccan', 'Cc09_g01580' => 'ccan', 'CDE01G0795' => 'cde', 'CDE02G2024' => 'cde', 'CDE02G2260' => 'cde', 'CDE02G4561' => 'cde', 'CDE05G2733' => 'cde', 'CDE05G3422' => 'cde', 'CDE06G2003' => 'cde', 'CDE08G0576' => 'cde', 'CDE09G0048' => 'cde', 'CDE11G0805' => 'cde', 'Cfa003644' => 'cfa', 'Cfa006290' => 'cfa', 'Cfa010080' => 'cfa', 'Cfa011376' => 'cfa', 'Cfa011576' => 'cfa', 'Cfa011577' => 'cfa', 'Cfa014389' => 'cfa', 'Ciclev10006044m.g' => 'ccl', 'Ciclev10006954m.g' => 'ccl', 'Ciclev10015131m.g' => 'ccl', 'Ciclev10015580m.g' => 'ccl', 'Ciclev10028359m.g' => 'ccl', 'Ciclev10028573m.g' => 'ccl', 'CiPaw.03G159300' => 'cil', 'CiPaw.04G115100' => 'cil', 'CiPaw.09G092800' => 'cil', 'CiPaw.10G071800' => 'cil', 'CiPaw.13G105800' => 'cil', 'CiPaw.13G141000' => 'cil', 'CiPaw.14G103400' => 'cil', 'ClCG01G012700' => 'cla', 'ClCG01G012720' => 'cla', 'ClCG01G021920' => 'cla', 'ClCG02G008870' => 'cla', 'ClCG02G020840' => 'cla', 'ClCG02G021930' => 'cla', 'COL.COLO4_19302' => 'col', 'COL.COLO4_25262' => 'col', 'COL.COLO4_31788' => 'col', 'Cpa.g.c34684' => 'cpa', 'Cpa.g.c36520.1' => 'cpa', 'Cpa.g.c45626' => 'cpa', 'Cpa.g.sc121.17' => 'cpa', 'Cpa.g.sc13.22' => 'cpa', 'Cpa.g.sc87.88' => 'cpa', 'Cre06.g261800' => 'cre', 'CsaV3_1G014500' => 'csa', 'CsaV3_1G014510' => 'csa', 'CsaV3_2G034880' => 'csa', 'CsaV3_6G014760' => 'csa', 'CsaV3_6G021500' => 'csa', 'CsaV3_6G048980' => 'csa', 'CSS0002511' => 'camsi', 'CSS0007556' => 'camsi', 'CSS0008532' => 'camsi', 'CSS0009709' => 'camsi', 'CSS0010486' => 'camsi', 'CSS0016768' => 'camsi', 'CSS0023512' => 'camsi', 'CSS0025341' => 'camsi', 'CSS0027999' => 'camsi', 'CSS0028944' => 'camsi', 'CSS0032292' => 'camsi', 'CSS0032464' => 'camsi', 'CSS0037153' => 'camsi', 'CSS0039256' => 'camsi', 'CSS0048392' => 'camsi', 'CSS0050458' => 'camsi', 'DCAR_004224' => 'dca', 'DCAR_006147' => 'dca', 'DCAR_006465' => 'dca', 'DCAR_008159' => 'dca', 'DCAR_012164' => 'dca', 'DCAR_019764' => 'dca', 'Dinv05418' => 'din', 'Dinv10839' => 'din', 'Dinv12521' => 'din', 'Dinv13900' => 'din', 'Dinv29426' => 'din', 'Duzib150G0263' => 'dzi', 'Duzib168G1178' => 'dzi', 'Duzib168G1924' => 'dzi', 'Duzib170G0299' => 'dzi', 'Duzib170G0813' => 'dzi', 'Duzib235G1128' => 'dzi', 'Duzib248G1060' => 'dzi', 'ECA232G1910' => 'eca', 'ECA233G4621' => 'eca', 'ECA238G1216' => 'eca', 'ECA238G1784' => 'eca', 'ECA248G1242' => 'eca', 'EL10Ac8g20071' => 'bvu', 'EL10Ac9g21086' => 'bvu', 'EL10Ac9g22407' => 'bvu', 'EL10Ac9g22412' => 'bvu', 'Eucgr.A01119' => 'egr', 'Eucgr.E04043' => 'egr', 'Eucgr.J00428' => 'egr', 'Eucgr.J00958' => 'egr', 'FAN11G3091' => 'fan', 'FAN11G3651' => 'fan', 'FAN16G2566' => 'fan', 'FAN21G3155' => 'fan', 'FAN21G3400' => 'fan', 'FAN21G3543' => 'fan', 'FAN25G0234' => 'fan', 'FAN25G1422' => 'fan', 'FAN25G3392' => 'fan', 'FvH4_3g01940' => 'fve', 'FvH4_3g29870' => 'fve', 'FvH4_3g33680' => 'fve', 'Glyma.09G004200' => 'gma', 'Glyma.11G151288' => 'gma', 'Glyma.11G189100' => 'gma', 'Glyma.12G072500' => 'gma', 'Glyma.12G085500' => 'gma', 'Glyma.12G181800' => 'gma', 'Glyma.12G193000' => 'gma', 'Glyma.13G309300' => 'gma', 'Glyma.13G319000' => 'gma', 'Glyma.17G012600' => 'gma', 'Gohir.A06G148600' => 'ghi', 'Gohir.A07G115800' => 'ghi', 'Gohir.A08G003600' => 'ghi', 'Gohir.A09G093300' => 'ghi', 'Gohir.A09G105400' => 'ghi', 'Gohir.A09G105500' => 'ghi', 'Gohir.D06G154600' => 'ghi', 'Gohir.D07G120200' => 'ghi', 'Gohir.D08G013900' => 'ghi', 'Gohir.D09G093100' => 'ghi', 'Gohir.D09G102200' => 'ghi', 'Gohir.D09G102300' => 'ghi', 'Gorai.001G129400' => 'gra', 'Gorai.004G008200' => 'gra', 'Gorai.006G109800' => 'gra', 'Gorai.006G119500' => 'gra', 'Gorai.006G121300' => 'gra', 'Gorai.010G180700' => 'gra', 'GSVIVG01012716001' => 'vvi', 'GSVIVG01025118001' => 'vvi', 'GSVIVG01030439001' => 'vvi', 'GSVIVG01031397001' => 'vvi', 'HanXRQChr01g0004201' => 'han', 'HanXRQChr02g0054941' => 'han', 'HanXRQChr05g0141811' => 'han', 'HanXRQChr07g0197751' => 'han', 'HanXRQChr11g0346691' => 'han', 'HanXRQChr13g0396971' => 'han', 'HanXRQChr14g0432951' => 'han', 'HanXRQChr14g0452001' => 'han', 'HanXRQChr15g0496681' => 'han', 'HanXRQChr17g0557491' => 'han', 'HanXRQChr17g0557501' => 'han', 'Haze_06809' => 'cav', 'Haze_12852' => 'cav', 'Haze_15850' => 'cav', 'Haze_23446' => 'cav', 'Haze_23942' => 'cav', 'Haze_23943' => 'cav', 'Hma1.2p1_0091F.1_g046450' => 'hma', 'Hma1.2p1_0128F.1_g059910' => 'hma', 'Hma1.2p1_0249F.1_g102260' => 'hma', 'Hma1.2p1_0453F.1_g156190' => 'hma', 'Hma1.2p1_0695F.1_g204380' => 'hma', 'Hma1.2p1_0749F.1_g212650' => 'hma', 'Hma1.2p1_2156F.1_g315420' => 'hma', 'Hma1.2p1_2686F.1_g326940' => 'hma', 'HPP92_006428' => 'vpl', 'HPP92_012069' => 'vpl', 'HPP92_014129' => 'vpl', 'HPP92_014133' => 'vpl', 'HPP92_017315' => 'vpl', 'HPP92_026445' => 'vpl', 'HPP92_026446' => 'vpl', 'Hund00774' => 'sun', 'Hund07682' => 'sun', 'Hund21413' => 'sun', 'Hund23462' => 'sun', 'Hund23463' => 'sun', 'Lalb_Chr03g0027911' => 'lal', 'Lalb_Chr13g0304271' => 'lal', 'Lalb_Chr19g0137471' => 'lal', 'Lalb_Chr22g0350651' => 'lal', 'Lalb_Chr24g0395151' => 'lal', 'Lj1A1231T40' => 'lonja', 'Lj1A221T48' => 'lonja', 'Lj1C924T12' => 'lonja', 'Lj2C993G6' => 'lonja', 'Lj3g0005790' => 'lja', 'Lj3g0015432' => 'lja', 'Lj3g0017722' => 'lja', 'Lj3g0018497' => 'lja', 'Lj4g0025071' => 'lja', 'Lsat_1_v5_gn_1_129680' => 'lsa', 'Lsat_1_v5_gn_2_25321' => 'lsa', 'Lsat_1_v5_gn_2_95461' => 'lsa', 'Lsat_1_v5_gn_4_159620' => 'lsa', 'Lsat_1_v5_gn_6_41301' => 'lsa', 'Lsat_1_v5_gn_6_74660' => 'lsa', 'Lsat_1_v5_gn_7_11520' => 'lsa', 'Lsat_1_v5_gn_9_67680' => 'lsa', 'Manes.04G008300' => 'mes', 'Manes.04G008400' => 'mes', 'Manes.04G026500' => 'mes', 'Manes.10G135300' => 'mes', 'Manes.11G157300' => 'mes', 'Manes.12G074000' => 'mes', 'Manes.16G006200' => 'mes', 'Manes.17G026400' => 'mes', 'Mapoly0024s0086' => 'mpo', 'Mapoly0024s0087' => 'mpo', 'Mapoly0071s0057' => 'mpo', 'Mapoly0204s0012' => 'mpo', 'MBI04_g37681_MAGBIO' => 'mbi', 'MBI05_g17779_MAGBIO' => 'mbi', 'MBI12_g31184_MAGBIO' => 'mbi', 'MBI17_g11083_MAGBIO' => 'mbi', 'MBI18_g03883_MAGBIO' => 'mbi', 'MBI18_g28940_MAGBIO' => 'mbi', 'MCO01G690' => 'mco', 'MD03G1109900' => 'mdo', 'MD03G1134800' => 'mdo', 'MD05G1348000' => 'mdo', 'MD10G1322400' => 'mdo', 'MD11G1123300' => 'mdo', 'MD11G1157600' => 'mdo', 'Medtr2g084875' => 'mtr', 'Medtr2g088130' => 'mtr', 'Medtr4g055310' => 'mtr', 'Medtr4g061070' => 'mtr', 'Medtr4g132250' => 'mtr', 'MELO3C004795.2' => 'cme', 'MELO3C004797.2' => 'cme', 'MELO3C007396.2' => 'cme', 'MELO3C019277.2' => 'cme', 'MELO3C021449.2' => 'cme', 'MELO3C025736.2' => 'cme', 'Migut.D02175' => 'egut', 'Migut.H01573' => 'egut', 'Migut.M01327' => 'egut', 'Migut.N02513' => 'egut', 'MSTRG.14638' => 'ama', 'MSTRG.18632' => 'ama', 'MSTRG.7203' => 'ama', 'Nitab4.5_0000533g0140' => 'nta', 'Nitab4.5_0000888g0150' => 'nta', 'Nitab4.5_0001453g0040' => 'nta', 'Nitab4.5_0002827g0090' => 'nta', 'Nitab4.5_0003082g0040' => 'nta', 'Nitab4.5_0007799g0040' => 'nta', 'Nitab4.5_0008983g0010' => 'nta', 'Nitab4.5_0009017g0020' => 'nta', 'Nn1g02132' => 'nnu', 'Nn1g03492' => 'nnu', 'Nn1g03493' => 'nnu', 'Nn1g03494' => 'nnu', 'Nn1g07164' => 'nnu', 'Nn1g07291' => 'nnu', 'Nn2g10655' => 'nnu', 'Nn2g11652' => 'nnu', 'Nn2g14008' => 'nnu', 'Nn3g17476' => 'nnu', 'Nn3g17477' => 'nnu', 'Nn4g22370' => 'nnu', 'Nn4g25255' => 'nnu', 'Nn5g27755' => 'nnu', 'Nn6g34260' => 'nnu', 'Nn6g35041' => 'nnu', 'Oeu005924.1' => 'oeu', 'Oeu008383.1' => 'oeu', 'Oeu014928.1' => 'oeu', 'Oeu019889.1' => 'oeu', 'Oeu022271.1' => 'oeu', 'Oeu025271.1' => 'oeu', 'Oeu036302.1' => 'oeu', 'Oeu044100.1' => 'oeu', 'Os01g0528300' => 'osa', 'Os03g0286200' => 'osa', 'Os04g0406600' => 'osa', 'Os07g0512000' => 'osa', 'Os07g0694600' => 'osa', 'Os08g0411000' => 'osa', 'Os09g0565700' => 'osa', 'Os09g0566050' => 'osa', 'Os10g0523700' => 'osa', 'Peaxi162Scf00002g00514' => 'pax', 'Peaxi162Scf00047g01817' => 'pax', 'Peaxi162Scf00114g00001' => 'pax', 'Peaxi162Scf00147g00613' => 'pax', 'Peaxi162Scf00389g00425' => 'pax', 'PGR042G1139' => 'pgr', 'PGR042G3273' => 'pgr', 'PGR102G2180' => 'pgr', 'PGR119G0234' => 'pgr', 'PGR119G0668' => 'pgr', 'PGSC0003DMG400007122' => 'stu', 'PGSC0003DMG400016478' => 'stu', 'PGSC0003DMG400025374' => 'stu', 'PGSC0003DMG400026536' => 'stu', 'Phvul.003G079600' => 'pvu', 'Phvul.005G115600' => 'pvu', 'Phvul.005G127100' => 'pvu', 'Phvul.006G149500' => 'pvu', 'Phvul.006G149600' => 'pvu', 'Phvul.011G071800' => 'pvu', 'Phvul.011G090400' => 'pvu', 'Potri.004G013400' => 'ptr', 'Potri.004G188100' => 'ptr', 'Potri.008G195500' => 'ptr', 'Potri.009G148800' => 'ptr', 'Potri.011G004700' => 'ptr', 'Pp3c17_22810' => 'ppa', 'Pp3c18_4480' => 'ppa', 'Pp3c19_13030' => 'ppa', 'Pp3c1_33620' => 'ppa', 'Pp3c2_9380' => 'ppa', 'PRCOL_00001023' => 'pco', 'Prupe.3G216300' => 'ppe', 'Prupe.4G019500' => 'ppe', 'Prupe.6G092500' => 'ppe', 'Prupe.6G119200' => 'ppe', 'Psat0s1945g0080' => 'psa', 'Psat0s4167g0040' => 'psa', 'Psat1g185800' => 'psa', 'Psat4g006440' => 'psa', 'Psat4g006480' => 'psa', 'Psat4g168120' => 'psa', 'Psat5g255680' => 'psa', 'Psat5g261760' => 'psa', 'Psat7g222120' => 'psa', 'PSO063G7252' => 'pso', 'PSO170G4778' => 'pso', 'PSO210G2249' => 'pso', 'PSO339G2411' => 'pso', 'PSO339G2457' => 'pso', 'PSO339G2854' => 'pso', 'PSO339G4288' => 'pso', 'PSO339G4615' => 'pso', 'PSO384G2796' => 'pso', 'PSO384G2940' => 'pso', 'PSO384G4227' => 'pso', 'PSO478G1425' => 'pso', 'PSO541G3863' => 'pso', 'PSO675G0507' => 'pso', 'PSO782G0338' => 'pso', 'PSO832G0644' => 'pso', 'QL01p013664' => 'qlo', 'QL01p036598' => 'qlo', 'QL05p072984' => 'qlo', 'QL08p005768' => 'qlo', 'QL08p032743' => 'qlo', 'QL93p0073_0439' => 'qlo', 'QL93p0073_0444' => 'qlo', 'RcHm_v2.0_Chr5g0002851' => 'rch', 'RcHm_v2.0_Chr5g0055201' => 'rch', 'RcHm_v2.0_Chr5g0061191' => 'rch', 'RcHm_v2.0_Chr7g0203231' => 'rch', 'Rhsim01G0208100' => 'rsi', 'Rhsim01G0208200' => 'rsi', 'Rhsim02G0106500' => 'rsi', 'Rhsim03G0107900' => 'rsi', 'Rhsim06G0163400' => 'rsi', 'Rhsim13G0105200' => 'rsi', 'Sabra04G0006300' => 'sbr', 'Sabra04G0127000' => 'sbr', 'Sabra08G0148700' => 'sbr', 'Sabra09G0117400' => 'sbr', 'SalBow1G3326' => 'sbo', 'SalBow3G3228' => 'sbo', 'SalBow6G1634' => 'sbo', 'SalBow6G3603' => 'sbo', 'SalBow6G5266' => 'sbo', 'SalBow7G2265' => 'sbo', 'SalBow8G0850' => 'sbo', 'SalBow8G2592' => 'sbo', 'Sc05g0009240' => 'sci', 'Sc12g0002300' => 'sci', 'Sc21g0000100' => 'sci', 'Sc21g0004720' => 'sci', 'Sed0002949' => 'sed', 'Sed0004114' => 'sed', 'Sed0004306' => 'sed', 'Sed0006172' => 'sed', 'Sed0008413' => 'sed', 'Sed0013809' => 'sed', 'Sed0019556' => 'sed', 'SEGI_03570' => 'sgi', 'SEGI_07859' => 'sgi', 'SEGI_15042' => 'sgi', 'SEGI_16263' => 'sgi', 'SEGI_16552' => 'sgi', 'SEGI_24331' => 'sgi', 'SEGI_27316' => 'sgi', 'SEGI_29521' => 'sgi', 'SEGI_41342' => 'sgi', 'SGA_v2.0_scaffold27G11617' => 'sas', 'SGA_v2.0_scaffold316G48428' => 'sas', 'SGA_v2.0_scaffold49G18261' => 'sas', 'SGA_v2.0_scaffold7G03831' => 'sas', 'SGA_v2.0_scaffold93G28359' => 'sas', 'SHI02210' => 'shi', 'SHI06028' => 'shi', 'SHI06321' => 'shi', 'SMO111G0012' => 'smo', 'SMO228G0080' => 'smo', 'SMO356G0756' => 'smo', 'Solyc02g080620.3' => 'sly', 'Solyc06g074530.1' => 'sly', 'Solyc11g066890.1' => 'sly', 'Solyc11g072520.3' => 'sly', 'Sopen02g025330' => 'spe', 'Sopen06g031000' => 'spe', 'Sopen09g008240' => 'spe', 'Sopen09g025210' => 'spe', 'Sopen11g026600' => 'spe', 'Sopen11g030170' => 'spe', 'Sp1g10420' => 'spa', 'Sp3g06570' => 'spa', 'Sp4g10660' => 'spa', 'Sp5g16460' => 'spa', 'Sp6g22710' => 'spa', 'TAR365G0112' => 'tar', 'TAR369G0717' => 'tar', 'TAR374G0976' => 'tar', 'TAR623G1128' => 'tar', 'TAR626G1937' => 'tar', 'TAR627G0123' => 'tar', 'TAR628G0305' => 'tar', 'TAR636G1176' => 'tar', 'TAR636G2442' => 'tar', 'THA.LOC104800556' => 'tha', 'THA.LOC104809501' => 'tha', 'THA.LOC104815126' => 'tha', 'THA.LOC104815732' => 'tha', 'THA.LOC104823528' => 'tha', 'Thecc.02G365600' => 'tca', 'Thecc.06G222300' => 'tca', 'Thecc.09G261800' => 'tca', 'Thecc.09G291400' => 'tca', 'Thhalv10003028m.g' => 'esa', 'Thhalv10007886m.g' => 'esa', 'Thhalv10016085m.g' => 'esa', 'Thhalv10016681m.g' => 'esa', 'Thhalv10020951m.g' => 'esa', 'TPR.G15598' => 'tpr', 'TPR.G29305' => 'tpr', 'TPR.G32395' => 'tpr', 'TPR.G36998' => 'tpr', 'TPR.G4227' => 'tpr', 'TWI18G1433' => 'twi', 'TWI31G0755' => 'twi', 'TWI38G0912' => 'twi', 'TWI75G1097' => 'twi', 'TWI75G1619' => 'twi', 'TWI79G1336' => 'twi', 'unitig_0.g943' => 'ugi', 'unitig_0.g944' => 'ugi', 'unitig_22.g6646' => 'ugi', 'unitig_37.g12681' => 'ugi', 'unitig_8.g3290' => 'ugi', 'vmacro03278' => 'vma', 'vmacro12197' => 'vma', 'vmacro14478' => 'vma', 'vmacro15787' => 'vma', 'vmacro15789' => 'vma', 'vmacro15790' => 'vma', 'vmacro15806' => 'vma', 'vmacro22907' => 'vma', 'vmacro22908' => 'vma', 'vmacro22909' => 'vma', 'vmacro23108' => 'vma', 'VMungo0540G0540' => 'vmu', 'VMungo0540G2468' => 'vmu', 'VMungo1080G0390' => 'vmu', 'VMungo1080G1165' => 'vmu', 'VMungo1127G0170' => 'vmu', 'VMungo1127G2099' => 'vmu', 'VMungo1215G3013' => 'vmu', 'Zm00001eb013110' => 'zma', 'Zm00001eb084260' => 'zma', 'Zm00001eb096110' => 'zma', 'Zm00001eb217510' => 'zma', 'Zm00001eb322550' => 'zma', 'Zm00001eb390770' => 'zma', 'Zm00001eb397170' => 'zma', 'Zm00001eb404610' => 'zma', 'Zm00001eb421790' => 'zma' ) $gf_id = 'HOM05D000911' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000911' ) $data_identifier = 'HOM05D000911' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 16, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 5, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 6, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 8, 'nnu' => (int) 16, 'oeu' => (int) 8, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 5, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 16, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421790' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000911', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27780' => 'bna', 'A03p35380' => 'bna', 'A04p21160' => 'bna', 'A05p40570' => 'bna', 'A06p26900' => 'bna', 'A08p33230' => 'bna', 'A09p65960' => 'bna', 'A10p18290' => 'bna', 'Aa31LG1G12990' => 'aar', 'Aa31LG1G2980' => 'aar', 'Aa31LG4G14320' => 'aar', 'Aa31LG7G11800' => 'aar', 'Aa31sc36G50' => 'aar', 'Aa31sc36G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3721' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5459' => 'aag', 'Actinidia03028' => 'ach', 'Actinidia03753' => 'ach', 'Actinidia04187' => 'ach', 'Actinidia05509' => 'ach', 'Actinidia24180' => 'ach', 'Actinidia26906' => 'ach', 'Actinidia37097' => 'ach', 'Actinidia38249' => 'ach', 'Ah.01g003470' => 'amhyb', 'Ah.01g004580' => 'amhyb', 'Ah.01g014850' => 'amhyb', 'Ah.01g016830' => 'amhyb', 'Ah.14g088000' => 'amhyb', 'AL1G22980' => 'aly', 'AL3G18990' => 'aly', 'AL4G22440' => 'aly', 'AL4G33180' => 'aly', 'AL5G22920' => 'aly', 'AL6G33660' => 'aly', 'AL8G20720' => 'aly', 'Aqoxy1G00935' => 'aox', 'Aqoxy1G02094' => 'aox', 'Aqoxy2G01239' => 'aox', 'Aqoxy4G01870' => 'aox', 'Aqoxy7G00450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.36ZVTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71EM27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5D6C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH3WRE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3NCM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RIM768' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YB5YRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z36GDV' => 'arhy', 'AT1G08250' => 'ath', 'AT1G11790' => 'ath', 'AT2G27820' => 'ath', 'AT3G07630' => 'ath', 'AT3G44720' => 'ath', 'AT5G22630' => 'ath', 'ATR0693G304' => 'atr', 'ATR0794G109' => 'atr', 'ATR0820G120' => 'atr', 'ATR1159G064' => 'atr', 'Atru.chr10.2239' => 'acertr', 'Atru.chr3.3371' => 'acertr', 'Atru.chr6.3202' => 'acertr', 'AUR62006499' => 'cqu', 'AUR62012718' => 'cqu', 'AUR62021938' => 'cqu', 'AUR62023932' => 'cqu', 'AUR62025034' => 'cqu', 'AUR62025035' => 'cqu', 'AUR62038307' => 'cqu', 'AUR62043466' => 'cqu', 'BcaB02g10748' => 'bca', 'BcaB03g13231' => 'bca', 'BcaB03g14689' => 'bca', 'BcaB05g22716' => 'bca', 'BcaB06g28172' => 'bca', 'BcaB08g36413' => 'bca', 'BcaC01g02186' => 'bca', 'BcaC01g04272' => 'bca', 'BcaC02g08080' => 'bca', 'BcaC02g08227' => 'bca', 'BcaC03g13901' => 'bca', 'BcaC04g19593' => 'bca', 'BcaC04g20874' => 'bca', 'BcaC05g29557' => 'bca', 'BcaC06g35505' => 'bca', 'BcaC07g41954' => 'bca', 'BcaC07g41955' => 'bca', 'BcaC07g41956' => 'bca', 'BcaC07g42519' => 'bca', 'BcaC07g42520' => 'bca', 'BcaC07g42523' => 'bca', 'BcaC07g42524' => 'bca', 'BcaC07g42525' => 'bca', 'BcaC08g47480' => 'bca', 'BcaC08g47481' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00530' => 'bna', 'BolC2t07178H' => 'bol', 'BolC3t16567H' => 'bol', 'BolC4t27234H' => 'bol', 'BolC5t29728H' => 'bol', 'BolC5t34622H' => 'bol', 'BolC6t40321H' => 'bol', 'BolC7t42028H' => 'bol', 'BolC8t49125H' => 'bol', 'BolC8t52538H' => 'bol', 'BolC8t52539H' => 'bol', 'BolC9t56681H' => 'bol', 'BolC9t58266H' => 'bol', 'BolSC21t60294H' => 'bol', 'BraA02t05670Z' => 'bra', 'BraA03t12716Z' => 'bra', 'BraA04t17685Z' => 'bra', 'BraA05t22788Z' => 'bra', 'BraA06t24032Z' => 'bra', 'BraA06t25625Z' => 'bra', 'BraA07t27930Z' => 'bra', 'BraA08t35242Z' => 'bra', 'BraA09t38609Z' => 'bra', 'BraA10t43905Z' => 'bra', 'C02p11060' => 'bna', 'C03p42990' => 'bna', 'C03p67310' => 'bna', 'C04p56990' => 'bna', 'C04p58660' => 'bna', 'C05p09890' => 'bna', 'C05p59680' => 'bna', 'C06p19830' => 'bna', 'C06p53040' => 'bna', 'C07p15230' => 'bna', 'C08p50070' => 'bna', 'C08p50090' => 'bna', 'C09p38330' => 'bna', 'C09p53940' => 'bna', 'CAN.G1014.1' => 'can', 'CAN.G644.30' => 'can', 'CAN.G84.47' => 'can', 'CAN.G919.8' => 'can', 'CANSAT54G0113' => 'cansat', 'CANSAT54G1286' => 'cansat', 'CANSAT64G1020' => 'cansat', 'CARHR008080' => 'chi', 'CARHR008090' => 'chi', 'CARHR012130' => 'chi', 'CARHR038390' => 'chi', 'CARHR082330' => 'chi', 'CARHR120520' => 'chi', 'CARHR151470' => 'chi', 'CARHR190950' => 'chi', 'Carub.0001s0760' => 'cru', 'Carub.0001s1146' => 'cru', 'Carub.0003s0721' => 'cru', 'Carub.0004s0858' => 'cru', 'Carub.0005s1040' => 'cru', 'Carub.0006s2035' => 'cru', 'Carub.0015s0005' => 'cru', 'Ca_01607_v3' => 'car', 'Ca_01677_v3' => 'car', 'Ca_06087_v3' => 'car', 'Ca_19238_v3' => 'car', 'Ca_19373_v3' => 'car', 'Ca_21079_v3' => 'car', 'CBR_g54016' => 'cbr', 'CBR_g54018' => 'cbr', 'CBR_g54020' => 'cbr', 'Cc01_g09780' => 'ccan', 'Cc01_g11680' => 'ccan', 'Cc02_g15610' => 'ccan', 'Cc05_g04350' => 'ccan', 'Cc09_g01580' => 'ccan', 'CDE01G0795' => 'cde', 'CDE02G2024' => 'cde', 'CDE02G2260' => 'cde', 'CDE02G4561' => 'cde', 'CDE05G2733' => 'cde', 'CDE05G3422' => 'cde', 'CDE06G2003' => 'cde', 'CDE08G0576' => 'cde', 'CDE09G0048' => 'cde', 'CDE11G0805' => 'cde', 'Cfa003644' => 'cfa', 'Cfa006290' => 'cfa', 'Cfa010080' => 'cfa', 'Cfa011376' => 'cfa', 'Cfa011576' => 'cfa', 'Cfa011577' => 'cfa', 'Cfa014389' => 'cfa', 'Ciclev10006044m.g' => 'ccl', 'Ciclev10006954m.g' => 'ccl', 'Ciclev10015131m.g' => 'ccl', 'Ciclev10015580m.g' => 'ccl', 'Ciclev10028359m.g' => 'ccl', 'Ciclev10028573m.g' => 'ccl', 'CiPaw.03G159300' => 'cil', 'CiPaw.04G115100' => 'cil', 'CiPaw.09G092800' => 'cil', 'CiPaw.10G071800' => 'cil', 'CiPaw.13G105800' => 'cil', 'CiPaw.13G141000' => 'cil', 'CiPaw.14G103400' => 'cil', 'ClCG01G012700' => 'cla', 'ClCG01G012720' => 'cla', 'ClCG01G021920' => 'cla', 'ClCG02G008870' => 'cla', 'ClCG02G020840' => 'cla', 'ClCG02G021930' => 'cla', 'COL.COLO4_19302' => 'col', 'COL.COLO4_25262' => 'col', 'COL.COLO4_31788' => 'col', 'Cpa.g.c34684' => 'cpa', 'Cpa.g.c36520.1' => 'cpa', 'Cpa.g.c45626' => 'cpa', 'Cpa.g.sc121.17' => 'cpa', 'Cpa.g.sc13.22' => 'cpa', 'Cpa.g.sc87.88' => 'cpa', 'Cre06.g261800' => 'cre', 'CsaV3_1G014500' => 'csa', 'CsaV3_1G014510' => 'csa', 'CsaV3_2G034880' => 'csa', 'CsaV3_6G014760' => 'csa', 'CsaV3_6G021500' => 'csa', 'CsaV3_6G048980' => 'csa', 'CSS0002511' => 'camsi', 'CSS0007556' => 'camsi', 'CSS0008532' => 'camsi', 'CSS0009709' => 'camsi', 'CSS0010486' => 'camsi', 'CSS0016768' => 'camsi', 'CSS0023512' => 'camsi', 'CSS0025341' => 'camsi', 'CSS0027999' => 'camsi', 'CSS0028944' => 'camsi', 'CSS0032292' => 'camsi', 'CSS0032464' => 'camsi', 'CSS0037153' => 'camsi', 'CSS0039256' => 'camsi', 'CSS0048392' => 'camsi', 'CSS0050458' => 'camsi', 'DCAR_004224' => 'dca', 'DCAR_006147' => 'dca', 'DCAR_006465' => 'dca', 'DCAR_008159' => 'dca', 'DCAR_012164' => 'dca', 'DCAR_019764' => 'dca', 'Dinv05418' => 'din', 'Dinv10839' => 'din', 'Dinv12521' => 'din', 'Dinv13900' => 'din', 'Dinv29426' => 'din', 'Duzib150G0263' => 'dzi', 'Duzib168G1178' => 'dzi', 'Duzib168G1924' => 'dzi', 'Duzib170G0299' => 'dzi', 'Duzib170G0813' => 'dzi', 'Duzib235G1128' => 'dzi', 'Duzib248G1060' => 'dzi', 'ECA232G1910' => 'eca', 'ECA233G4621' => 'eca', 'ECA238G1216' => 'eca', 'ECA238G1784' => 'eca', 'ECA248G1242' => 'eca', 'EL10Ac8g20071' => 'bvu', 'EL10Ac9g21086' => 'bvu', 'EL10Ac9g22407' => 'bvu', 'EL10Ac9g22412' => 'bvu', 'Eucgr.A01119' => 'egr', 'Eucgr.E04043' => 'egr', 'Eucgr.J00428' => 'egr', 'Eucgr.J00958' => 'egr', 'FAN11G3091' => 'fan', 'FAN11G3651' => 'fan', 'FAN16G2566' => 'fan', 'FAN21G3155' => 'fan', 'FAN21G3400' => 'fan', 'FAN21G3543' => 'fan', 'FAN25G0234' => 'fan', 'FAN25G1422' => 'fan', 'FAN25G3392' => 'fan', 'FvH4_3g01940' => 'fve', 'FvH4_3g29870' => 'fve', 'FvH4_3g33680' => 'fve', 'Glyma.09G004200' => 'gma', 'Glyma.11G151288' => 'gma', 'Glyma.11G189100' => 'gma', 'Glyma.12G072500' => 'gma', 'Glyma.12G085500' => 'gma', 'Glyma.12G181800' => 'gma', 'Glyma.12G193000' => 'gma', 'Glyma.13G309300' => 'gma', 'Glyma.13G319000' => 'gma', 'Glyma.17G012600' => 'gma', 'Gohir.A06G148600' => 'ghi', 'Gohir.A07G115800' => 'ghi', 'Gohir.A08G003600' => 'ghi', 'Gohir.A09G093300' => 'ghi', 'Gohir.A09G105400' => 'ghi', 'Gohir.A09G105500' => 'ghi', 'Gohir.D06G154600' => 'ghi', 'Gohir.D07G120200' => 'ghi', 'Gohir.D08G013900' => 'ghi', 'Gohir.D09G093100' => 'ghi', 'Gohir.D09G102200' => 'ghi', 'Gohir.D09G102300' => 'ghi', 'Gorai.001G129400' => 'gra', 'Gorai.004G008200' => 'gra', 'Gorai.006G109800' => 'gra', 'Gorai.006G119500' => 'gra', 'Gorai.006G121300' => 'gra', 'Gorai.010G180700' => 'gra', 'GSVIVG01012716001' => 'vvi', 'GSVIVG01025118001' => 'vvi', 'GSVIVG01030439001' => 'vvi', 'GSVIVG01031397001' => 'vvi', 'HanXRQChr01g0004201' => 'han', 'HanXRQChr02g0054941' => 'han', 'HanXRQChr05g0141811' => 'han', 'HanXRQChr07g0197751' => 'han', 'HanXRQChr11g0346691' => 'han', 'HanXRQChr13g0396971' => 'han', 'HanXRQChr14g0432951' => 'han', 'HanXRQChr14g0452001' => 'han', 'HanXRQChr15g0496681' => 'han', 'HanXRQChr17g0557491' => 'han', 'HanXRQChr17g0557501' => 'han', 'Haze_06809' => 'cav', 'Haze_12852' => 'cav', 'Haze_15850' => 'cav', 'Haze_23446' => 'cav', 'Haze_23942' => 'cav', 'Haze_23943' => 'cav', 'Hma1.2p1_0091F.1_g046450' => 'hma', 'Hma1.2p1_0128F.1_g059910' => 'hma', 'Hma1.2p1_0249F.1_g102260' => 'hma', 'Hma1.2p1_0453F.1_g156190' => 'hma', 'Hma1.2p1_0695F.1_g204380' => 'hma', 'Hma1.2p1_0749F.1_g212650' => 'hma', 'Hma1.2p1_2156F.1_g315420' => 'hma', 'Hma1.2p1_2686F.1_g326940' => 'hma', 'HPP92_006428' => 'vpl', 'HPP92_012069' => 'vpl', 'HPP92_014129' => 'vpl', 'HPP92_014133' => 'vpl', 'HPP92_017315' => 'vpl', 'HPP92_026445' => 'vpl', 'HPP92_026446' => 'vpl', 'Hund00774' => 'sun', 'Hund07682' => 'sun', 'Hund21413' => 'sun', 'Hund23462' => 'sun', 'Hund23463' => 'sun', 'Lalb_Chr03g0027911' => 'lal', 'Lalb_Chr13g0304271' => 'lal', 'Lalb_Chr19g0137471' => 'lal', 'Lalb_Chr22g0350651' => 'lal', 'Lalb_Chr24g0395151' => 'lal', 'Lj1A1231T40' => 'lonja', 'Lj1A221T48' => 'lonja', 'Lj1C924T12' => 'lonja', 'Lj2C993G6' => 'lonja', 'Lj3g0005790' => 'lja', 'Lj3g0015432' => 'lja', 'Lj3g0017722' => 'lja', 'Lj3g0018497' => 'lja', 'Lj4g0025071' => 'lja', 'Lsat_1_v5_gn_1_129680' => 'lsa', 'Lsat_1_v5_gn_2_25321' => 'lsa', 'Lsat_1_v5_gn_2_95461' => 'lsa', 'Lsat_1_v5_gn_4_159620' => 'lsa', 'Lsat_1_v5_gn_6_41301' => 'lsa', 'Lsat_1_v5_gn_6_74660' => 'lsa', 'Lsat_1_v5_gn_7_11520' => 'lsa', 'Lsat_1_v5_gn_9_67680' => 'lsa', 'Manes.04G008300' => 'mes', 'Manes.04G008400' => 'mes', 'Manes.04G026500' => 'mes', 'Manes.10G135300' => 'mes', 'Manes.11G157300' => 'mes', 'Manes.12G074000' => 'mes', 'Manes.16G006200' => 'mes', 'Manes.17G026400' => 'mes', 'Mapoly0024s0086' => 'mpo', 'Mapoly0024s0087' => 'mpo', 'Mapoly0071s0057' => 'mpo', 'Mapoly0204s0012' => 'mpo', 'MBI04_g37681_MAGBIO' => 'mbi', 'MBI05_g17779_MAGBIO' => 'mbi', 'MBI12_g31184_MAGBIO' => 'mbi', 'MBI17_g11083_MAGBIO' => 'mbi', 'MBI18_g03883_MAGBIO' => 'mbi', 'MBI18_g28940_MAGBIO' => 'mbi', 'MCO01G690' => 'mco', 'MD03G1109900' => 'mdo', 'MD03G1134800' => 'mdo', 'MD05G1348000' => 'mdo', 'MD10G1322400' => 'mdo', 'MD11G1123300' => 'mdo', 'MD11G1157600' => 'mdo', 'Medtr2g084875' => 'mtr', 'Medtr2g088130' => 'mtr', 'Medtr4g055310' => 'mtr', 'Medtr4g061070' => 'mtr', 'Medtr4g132250' => 'mtr', 'MELO3C004795.2' => 'cme', 'MELO3C004797.2' => 'cme', 'MELO3C007396.2' => 'cme', 'MELO3C019277.2' => 'cme', 'MELO3C021449.2' => 'cme', 'MELO3C025736.2' => 'cme', 'Migut.D02175' => 'egut', 'Migut.H01573' => 'egut', 'Migut.M01327' => 'egut', 'Migut.N02513' => 'egut', 'MSTRG.14638' => 'ama', 'MSTRG.18632' => 'ama', 'MSTRG.7203' => 'ama', 'Nitab4.5_0000533g0140' => 'nta', 'Nitab4.5_0000888g0150' => 'nta', 'Nitab4.5_0001453g0040' => 'nta', 'Nitab4.5_0002827g0090' => 'nta', 'Nitab4.5_0003082g0040' => 'nta', 'Nitab4.5_0007799g0040' => 'nta', 'Nitab4.5_0008983g0010' => 'nta', 'Nitab4.5_0009017g0020' => 'nta', 'Nn1g02132' => 'nnu', 'Nn1g03492' => 'nnu', 'Nn1g03493' => 'nnu', 'Nn1g03494' => 'nnu', 'Nn1g07164' => 'nnu', 'Nn1g07291' => 'nnu', 'Nn2g10655' => 'nnu', 'Nn2g11652' => 'nnu', 'Nn2g14008' => 'nnu', 'Nn3g17476' => 'nnu', 'Nn3g17477' => 'nnu', 'Nn4g22370' => 'nnu', 'Nn4g25255' => 'nnu', 'Nn5g27755' => 'nnu', 'Nn6g34260' => 'nnu', 'Nn6g35041' => 'nnu', 'Oeu005924.1' => 'oeu', 'Oeu008383.1' => 'oeu', 'Oeu014928.1' => 'oeu', 'Oeu019889.1' => 'oeu', 'Oeu022271.1' => 'oeu', 'Oeu025271.1' => 'oeu', 'Oeu036302.1' => 'oeu', 'Oeu044100.1' => 'oeu', 'Os01g0528300' => 'osa', 'Os03g0286200' => 'osa', 'Os04g0406600' => 'osa', 'Os07g0512000' => 'osa', 'Os07g0694600' => 'osa', 'Os08g0411000' => 'osa', 'Os09g0565700' => 'osa', 'Os09g0566050' => 'osa', 'Os10g0523700' => 'osa', 'Peaxi162Scf00002g00514' => 'pax', 'Peaxi162Scf00047g01817' => 'pax', 'Peaxi162Scf00114g00001' => 'pax', 'Peaxi162Scf00147g00613' => 'pax', 'Peaxi162Scf00389g00425' => 'pax', 'PGR042G1139' => 'pgr', 'PGR042G3273' => 'pgr', 'PGR102G2180' => 'pgr', 'PGR119G0234' => 'pgr', 'PGR119G0668' => 'pgr', 'PGSC0003DMG400007122' => 'stu', 'PGSC0003DMG400016478' => 'stu', 'PGSC0003DMG400025374' => 'stu', 'PGSC0003DMG400026536' => 'stu', 'Phvul.003G079600' => 'pvu', 'Phvul.005G115600' => 'pvu', 'Phvul.005G127100' => 'pvu', 'Phvul.006G149500' => 'pvu', 'Phvul.006G149600' => 'pvu', 'Phvul.011G071800' => 'pvu', 'Phvul.011G090400' => 'pvu', 'Potri.004G013400' => 'ptr', 'Potri.004G188100' => 'ptr', 'Potri.008G195500' => 'ptr', 'Potri.009G148800' => 'ptr', 'Potri.011G004700' => 'ptr', 'Pp3c17_22810' => 'ppa', 'Pp3c18_4480' => 'ppa', 'Pp3c19_13030' => 'ppa', 'Pp3c1_33620' => 'ppa', 'Pp3c2_9380' => 'ppa', 'PRCOL_00001023' => 'pco', 'Prupe.3G216300' => 'ppe', 'Prupe.4G019500' => 'ppe', 'Prupe.6G092500' => 'ppe', 'Prupe.6G119200' => 'ppe', 'Psat0s1945g0080' => 'psa', 'Psat0s4167g0040' => 'psa', 'Psat1g185800' => 'psa', 'Psat4g006440' => 'psa', 'Psat4g006480' => 'psa', 'Psat4g168120' => 'psa', 'Psat5g255680' => 'psa', 'Psat5g261760' => 'psa', 'Psat7g222120' => 'psa', 'PSO063G7252' => 'pso', 'PSO170G4778' => 'pso', 'PSO210G2249' => 'pso', 'PSO339G2411' => 'pso', 'PSO339G2457' => 'pso', 'PSO339G2854' => 'pso', 'PSO339G4288' => 'pso', 'PSO339G4615' => 'pso', 'PSO384G2796' => 'pso', 'PSO384G2940' => 'pso', 'PSO384G4227' => 'pso', 'PSO478G1425' => 'pso', 'PSO541G3863' => 'pso', 'PSO675G0507' => 'pso', 'PSO782G0338' => 'pso', 'PSO832G0644' => 'pso', 'QL01p013664' => 'qlo', 'QL01p036598' => 'qlo', 'QL05p072984' => 'qlo', 'QL08p005768' => 'qlo', 'QL08p032743' => 'qlo', 'QL93p0073_0439' => 'qlo', 'QL93p0073_0444' => 'qlo', 'RcHm_v2.0_Chr5g0002851' => 'rch', 'RcHm_v2.0_Chr5g0055201' => 'rch', 'RcHm_v2.0_Chr5g0061191' => 'rch', 'RcHm_v2.0_Chr7g0203231' => 'rch', 'Rhsim01G0208100' => 'rsi', 'Rhsim01G0208200' => 'rsi', 'Rhsim02G0106500' => 'rsi', 'Rhsim03G0107900' => 'rsi', 'Rhsim06G0163400' => 'rsi', 'Rhsim13G0105200' => 'rsi', 'Sabra04G0006300' => 'sbr', 'Sabra04G0127000' => 'sbr', 'Sabra08G0148700' => 'sbr', 'Sabra09G0117400' => 'sbr', 'SalBow1G3326' => 'sbo', 'SalBow3G3228' => 'sbo', 'SalBow6G1634' => 'sbo', 'SalBow6G3603' => 'sbo', 'SalBow6G5266' => 'sbo', 'SalBow7G2265' => 'sbo', 'SalBow8G0850' => 'sbo', 'SalBow8G2592' => 'sbo', 'Sc05g0009240' => 'sci', 'Sc12g0002300' => 'sci', 'Sc21g0000100' => 'sci', 'Sc21g0004720' => 'sci', 'Sed0002949' => 'sed', 'Sed0004114' => 'sed', 'Sed0004306' => 'sed', 'Sed0006172' => 'sed', 'Sed0008413' => 'sed', 'Sed0013809' => 'sed', 'Sed0019556' => 'sed', 'SEGI_03570' => 'sgi', 'SEGI_07859' => 'sgi', 'SEGI_15042' => 'sgi', 'SEGI_16263' => 'sgi', 'SEGI_16552' => 'sgi', 'SEGI_24331' => 'sgi', 'SEGI_27316' => 'sgi', 'SEGI_29521' => 'sgi', 'SEGI_41342' => 'sgi', 'SGA_v2.0_scaffold27G11617' => 'sas', 'SGA_v2.0_scaffold316G48428' => 'sas', 'SGA_v2.0_scaffold49G18261' => 'sas', 'SGA_v2.0_scaffold7G03831' => 'sas', 'SGA_v2.0_scaffold93G28359' => 'sas', 'SHI02210' => 'shi', 'SHI06028' => 'shi', 'SHI06321' => 'shi', 'SMO111G0012' => 'smo', 'SMO228G0080' => 'smo', 'SMO356G0756' => 'smo', 'Solyc02g080620.3' => 'sly', 'Solyc06g074530.1' => 'sly', 'Solyc11g066890.1' => 'sly', 'Solyc11g072520.3' => 'sly', 'Sopen02g025330' => 'spe', 'Sopen06g031000' => 'spe', 'Sopen09g008240' => 'spe', 'Sopen09g025210' => 'spe', 'Sopen11g026600' => 'spe', 'Sopen11g030170' => 'spe', 'Sp1g10420' => 'spa', 'Sp3g06570' => 'spa', 'Sp4g10660' => 'spa', 'Sp5g16460' => 'spa', 'Sp6g22710' => 'spa', 'TAR365G0112' => 'tar', 'TAR369G0717' => 'tar', 'TAR374G0976' => 'tar', 'TAR623G1128' => 'tar', 'TAR626G1937' => 'tar', 'TAR627G0123' => 'tar', 'TAR628G0305' => 'tar', 'TAR636G1176' => 'tar', 'TAR636G2442' => 'tar', 'THA.LOC104800556' => 'tha', 'THA.LOC104809501' => 'tha', 'THA.LOC104815126' => 'tha', 'THA.LOC104815732' => 'tha', 'THA.LOC104823528' => 'tha', 'Thecc.02G365600' => 'tca', 'Thecc.06G222300' => 'tca', 'Thecc.09G261800' => 'tca', 'Thecc.09G291400' => 'tca', 'Thhalv10003028m.g' => 'esa', 'Thhalv10007886m.g' => 'esa', 'Thhalv10016085m.g' => 'esa', 'Thhalv10016681m.g' => 'esa', 'Thhalv10020951m.g' => 'esa', 'TPR.G15598' => 'tpr', 'TPR.G29305' => 'tpr', 'TPR.G32395' => 'tpr', 'TPR.G36998' => 'tpr', 'TPR.G4227' => 'tpr', 'TWI18G1433' => 'twi', 'TWI31G0755' => 'twi', 'TWI38G0912' => 'twi', 'TWI75G1097' => 'twi', 'TWI75G1619' => 'twi', 'TWI79G1336' => 'twi', 'unitig_0.g943' => 'ugi', 'unitig_0.g944' => 'ugi', 'unitig_22.g6646' => 'ugi', 'unitig_37.g12681' => 'ugi', 'unitig_8.g3290' => 'ugi', 'vmacro03278' => 'vma', 'vmacro12197' => 'vma', 'vmacro14478' => 'vma', 'vmacro15787' => 'vma', 'vmacro15789' => 'vma', 'vmacro15790' => 'vma', 'vmacro15806' => 'vma', 'vmacro22907' => 'vma', 'vmacro22908' => 'vma', 'vmacro22909' => 'vma', 'vmacro23108' => 'vma', 'VMungo0540G0540' => 'vmu', 'VMungo0540G2468' => 'vmu', 'VMungo1080G0390' => 'vmu', 'VMungo1080G1165' => 'vmu', 'VMungo1127G0170' => 'vmu', 'VMungo1127G2099' => 'vmu', 'VMungo1215G3013' => 'vmu', 'Zm00001eb013110' => 'zma', 'Zm00001eb084260' => 'zma', 'Zm00001eb096110' => 'zma', 'Zm00001eb217510' => 'zma', 'Zm00001eb322550' => 'zma', 'Zm00001eb390770' => 'zma', 'Zm00001eb397170' => 'zma', 'Zm00001eb404610' => 'zma', 'Zm00001eb421790' => 'zma' ), 'gf_id' => 'HOM05D000911', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000911' ), 'data_identifier' => 'HOM05D000911', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000911', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27780' => 'bna', 'A03p35380' => 'bna', 'A04p21160' => 'bna', 'A05p40570' => 'bna', 'A06p26900' => 'bna', 'A08p33230' => 'bna', 'A09p65960' => 'bna', 'A10p18290' => 'bna', 'Aa31LG1G12990' => 'aar', 'Aa31LG1G2980' => 'aar', 'Aa31LG4G14320' => 'aar', 'Aa31LG7G11800' => 'aar', 'Aa31sc36G50' => 'aar', 'Aa31sc36G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3721' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5459' => 'aag', 'Actinidia03028' => 'ach', 'Actinidia03753' => 'ach', 'Actinidia04187' => 'ach', 'Actinidia05509' => 'ach', 'Actinidia24180' => 'ach', 'Actinidia26906' => 'ach', 'Actinidia37097' => 'ach', 'Actinidia38249' => 'ach', 'Ah.01g003470' => 'amhyb', 'Ah.01g004580' => 'amhyb', 'Ah.01g014850' => 'amhyb', 'Ah.01g016830' => 'amhyb', 'Ah.14g088000' => 'amhyb', 'AL1G22980' => 'aly', 'AL3G18990' => 'aly', 'AL4G22440' => 'aly', 'AL4G33180' => 'aly', 'AL5G22920' => 'aly', 'AL6G33660' => 'aly', 'AL8G20720' => 'aly', 'Aqoxy1G00935' => 'aox', 'Aqoxy1G02094' => 'aox', 'Aqoxy2G01239' => 'aox', 'Aqoxy4G01870' => 'aox', 'Aqoxy7G00450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.36ZVTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71EM27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5D6C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH3WRE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3NCM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RIM768' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YB5YRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z36GDV' => 'arhy', 'AT1G08250' => 'ath', 'AT1G11790' => 'ath', 'AT2G27820' => 'ath', 'AT3G07630' => 'ath', 'AT3G44720' => 'ath', 'AT5G22630' => 'ath', 'ATR0693G304' => 'atr', 'ATR0794G109' => 'atr', 'ATR0820G120' => 'atr', 'ATR1159G064' => 'atr', 'Atru.chr10.2239' => 'acertr', 'Atru.chr3.3371' => 'acertr', 'Atru.chr6.3202' => 'acertr', 'AUR62006499' => 'cqu', 'AUR62012718' => 'cqu', 'AUR62021938' => 'cqu', 'AUR62023932' => 'cqu', 'AUR62025034' => 'cqu', 'AUR62025035' => 'cqu', 'AUR62038307' => 'cqu', 'AUR62043466' => 'cqu', 'BcaB02g10748' => 'bca', 'BcaB03g13231' => 'bca', 'BcaB03g14689' => 'bca', 'BcaB05g22716' => 'bca', 'BcaB06g28172' => 'bca', 'BcaB08g36413' => 'bca', 'BcaC01g02186' => 'bca', 'BcaC01g04272' => 'bca', 'BcaC02g08080' => 'bca', 'BcaC02g08227' => 'bca', 'BcaC03g13901' => 'bca', 'BcaC04g19593' => 'bca', 'BcaC04g20874' => 'bca', 'BcaC05g29557' => 'bca', 'BcaC06g35505' => 'bca', 'BcaC07g41954' => 'bca', 'BcaC07g41955' => 'bca', 'BcaC07g41956' => 'bca', 'BcaC07g42519' => 'bca', 'BcaC07g42520' => 'bca', 'BcaC07g42523' => 'bca', 'BcaC07g42524' => 'bca', 'BcaC07g42525' => 'bca', 'BcaC08g47480' => 'bca', 'BcaC08g47481' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00530' => 'bna', 'BolC2t07178H' => 'bol', 'BolC3t16567H' => 'bol', 'BolC4t27234H' => 'bol', 'BolC5t29728H' => 'bol', 'BolC5t34622H' => 'bol', 'BolC6t40321H' => 'bol', 'BolC7t42028H' => 'bol', 'BolC8t49125H' => 'bol', 'BolC8t52538H' => 'bol', 'BolC8t52539H' => 'bol', 'BolC9t56681H' => 'bol', 'BolC9t58266H' => 'bol', 'BolSC21t60294H' => 'bol', 'BraA02t05670Z' => 'bra', 'BraA03t12716Z' => 'bra', 'BraA04t17685Z' => 'bra', 'BraA05t22788Z' => 'bra', 'BraA06t24032Z' => 'bra', 'BraA06t25625Z' => 'bra', 'BraA07t27930Z' => 'bra', 'BraA08t35242Z' => 'bra', 'BraA09t38609Z' => 'bra', 'BraA10t43905Z' => 'bra', 'C02p11060' => 'bna', 'C03p42990' => 'bna', 'C03p67310' => 'bna', 'C04p56990' => 'bna', 'C04p58660' => 'bna', 'C05p09890' => 'bna', 'C05p59680' => 'bna', 'C06p19830' => 'bna', 'C06p53040' => 'bna', 'C07p15230' => 'bna', 'C08p50070' => 'bna', 'C08p50090' => 'bna', 'C09p38330' => 'bna', 'C09p53940' => 'bna', 'CAN.G1014.1' => 'can', 'CAN.G644.30' => 'can', 'CAN.G84.47' => 'can', 'CAN.G919.8' => 'can', 'CANSAT54G0113' => 'cansat', 'CANSAT54G1286' => 'cansat', 'CANSAT64G1020' => 'cansat', 'CARHR008080' => 'chi', 'CARHR008090' => 'chi', 'CARHR012130' => 'chi', 'CARHR038390' => 'chi', 'CARHR082330' => 'chi', 'CARHR120520' => 'chi', 'CARHR151470' => 'chi', 'CARHR190950' => 'chi', 'Carub.0001s0760' => 'cru', 'Carub.0001s1146' => 'cru', 'Carub.0003s0721' => 'cru', 'Carub.0004s0858' => 'cru', 'Carub.0005s1040' => 'cru', 'Carub.0006s2035' => 'cru', 'Carub.0015s0005' => 'cru', 'Ca_01607_v3' => 'car', 'Ca_01677_v3' => 'car', 'Ca_06087_v3' => 'car', 'Ca_19238_v3' => 'car', 'Ca_19373_v3' => 'car', 'Ca_21079_v3' => 'car', 'CBR_g54016' => 'cbr', 'CBR_g54018' => 'cbr', 'CBR_g54020' => 'cbr', 'Cc01_g09780' => 'ccan', 'Cc01_g11680' => 'ccan', 'Cc02_g15610' => 'ccan', 'Cc05_g04350' => 'ccan', 'Cc09_g01580' => 'ccan', 'CDE01G0795' => 'cde', 'CDE02G2024' => 'cde', 'CDE02G2260' => 'cde', 'CDE02G4561' => 'cde', 'CDE05G2733' => 'cde', 'CDE05G3422' => 'cde', 'CDE06G2003' => 'cde', 'CDE08G0576' => 'cde', 'CDE09G0048' => 'cde', 'CDE11G0805' => 'cde', 'Cfa003644' => 'cfa', 'Cfa006290' => 'cfa', 'Cfa010080' => 'cfa', 'Cfa011376' => 'cfa', 'Cfa011576' => 'cfa', 'Cfa011577' => 'cfa', 'Cfa014389' => 'cfa', 'Ciclev10006044m.g' => 'ccl', 'Ciclev10006954m.g' => 'ccl', 'Ciclev10015131m.g' => 'ccl', 'Ciclev10015580m.g' => 'ccl', 'Ciclev10028359m.g' => 'ccl', 'Ciclev10028573m.g' => 'ccl', 'CiPaw.03G159300' => 'cil', 'CiPaw.04G115100' => 'cil', 'CiPaw.09G092800' => 'cil', 'CiPaw.10G071800' => 'cil', 'CiPaw.13G105800' => 'cil', 'CiPaw.13G141000' => 'cil', 'CiPaw.14G103400' => 'cil', 'ClCG01G012700' => 'cla', 'ClCG01G012720' => 'cla', 'ClCG01G021920' => 'cla', 'ClCG02G008870' => 'cla', 'ClCG02G020840' => 'cla', 'ClCG02G021930' => 'cla', 'COL.COLO4_19302' => 'col', 'COL.COLO4_25262' => 'col', 'COL.COLO4_31788' => 'col', 'Cpa.g.c34684' => 'cpa', 'Cpa.g.c36520.1' => 'cpa', 'Cpa.g.c45626' => 'cpa', 'Cpa.g.sc121.17' => 'cpa', 'Cpa.g.sc13.22' => 'cpa', 'Cpa.g.sc87.88' => 'cpa', 'Cre06.g261800' => 'cre', 'CsaV3_1G014500' => 'csa', 'CsaV3_1G014510' => 'csa', 'CsaV3_2G034880' => 'csa', 'CsaV3_6G014760' => 'csa', 'CsaV3_6G021500' => 'csa', 'CsaV3_6G048980' => 'csa', 'CSS0002511' => 'camsi', 'CSS0007556' => 'camsi', 'CSS0008532' => 'camsi', 'CSS0009709' => 'camsi', 'CSS0010486' => 'camsi', 'CSS0016768' => 'camsi', 'CSS0023512' => 'camsi', 'CSS0025341' => 'camsi', 'CSS0027999' => 'camsi', 'CSS0028944' => 'camsi', 'CSS0032292' => 'camsi', 'CSS0032464' => 'camsi', 'CSS0037153' => 'camsi', 'CSS0039256' => 'camsi', 'CSS0048392' => 'camsi', 'CSS0050458' => 'camsi', 'DCAR_004224' => 'dca', 'DCAR_006147' => 'dca', 'DCAR_006465' => 'dca', 'DCAR_008159' => 'dca', 'DCAR_012164' => 'dca', 'DCAR_019764' => 'dca', 'Dinv05418' => 'din', 'Dinv10839' => 'din', 'Dinv12521' => 'din', 'Dinv13900' => 'din', 'Dinv29426' => 'din', 'Duzib150G0263' => 'dzi', 'Duzib168G1178' => 'dzi', 'Duzib168G1924' => 'dzi', 'Duzib170G0299' => 'dzi', 'Duzib170G0813' => 'dzi', 'Duzib235G1128' => 'dzi', 'Duzib248G1060' => 'dzi', 'ECA232G1910' => 'eca', 'ECA233G4621' => 'eca', 'ECA238G1216' => 'eca', 'ECA238G1784' => 'eca', 'ECA248G1242' => 'eca', 'EL10Ac8g20071' => 'bvu', 'EL10Ac9g21086' => 'bvu', 'EL10Ac9g22407' => 'bvu', 'EL10Ac9g22412' => 'bvu', 'Eucgr.A01119' => 'egr', 'Eucgr.E04043' => 'egr', 'Eucgr.J00428' => 'egr', 'Eucgr.J00958' => 'egr', 'FAN11G3091' => 'fan', 'FAN11G3651' => 'fan', 'FAN16G2566' => 'fan', 'FAN21G3155' => 'fan', 'FAN21G3400' => 'fan', 'FAN21G3543' => 'fan', 'FAN25G0234' => 'fan', 'FAN25G1422' => 'fan', 'FAN25G3392' => 'fan', 'FvH4_3g01940' => 'fve', 'FvH4_3g29870' => 'fve', 'FvH4_3g33680' => 'fve', 'Glyma.09G004200' => 'gma', 'Glyma.11G151288' => 'gma', 'Glyma.11G189100' => 'gma', 'Glyma.12G072500' => 'gma', 'Glyma.12G085500' => 'gma', 'Glyma.12G181800' => 'gma', 'Glyma.12G193000' => 'gma', 'Glyma.13G309300' => 'gma', 'Glyma.13G319000' => 'gma', 'Glyma.17G012600' => 'gma', 'Gohir.A06G148600' => 'ghi', 'Gohir.A07G115800' => 'ghi', 'Gohir.A08G003600' => 'ghi', 'Gohir.A09G093300' => 'ghi', 'Gohir.A09G105400' => 'ghi', 'Gohir.A09G105500' => 'ghi', 'Gohir.D06G154600' => 'ghi', 'Gohir.D07G120200' => 'ghi', 'Gohir.D08G013900' => 'ghi', 'Gohir.D09G093100' => 'ghi', 'Gohir.D09G102200' => 'ghi', 'Gohir.D09G102300' => 'ghi', 'Gorai.001G129400' => 'gra', 'Gorai.004G008200' => 'gra', 'Gorai.006G109800' => 'gra', 'Gorai.006G119500' => 'gra', 'Gorai.006G121300' => 'gra', 'Gorai.010G180700' => 'gra', 'GSVIVG01012716001' => 'vvi', 'GSVIVG01025118001' => 'vvi', 'GSVIVG01030439001' => 'vvi', 'GSVIVG01031397001' => 'vvi', 'HanXRQChr01g0004201' => 'han', 'HanXRQChr02g0054941' => 'han', 'HanXRQChr05g0141811' => 'han', 'HanXRQChr07g0197751' => 'han', 'HanXRQChr11g0346691' => 'han', 'HanXRQChr13g0396971' => 'han', 'HanXRQChr14g0432951' => 'han', 'HanXRQChr14g0452001' => 'han', 'HanXRQChr15g0496681' => 'han', 'HanXRQChr17g0557491' => 'han', 'HanXRQChr17g0557501' => 'han', 'Haze_06809' => 'cav', 'Haze_12852' => 'cav', 'Haze_15850' => 'cav', 'Haze_23446' => 'cav', 'Haze_23942' => 'cav', 'Haze_23943' => 'cav', 'Hma1.2p1_0091F.1_g046450' => 'hma', 'Hma1.2p1_0128F.1_g059910' => 'hma', 'Hma1.2p1_0249F.1_g102260' => 'hma', 'Hma1.2p1_0453F.1_g156190' => 'hma', 'Hma1.2p1_0695F.1_g204380' => 'hma', 'Hma1.2p1_0749F.1_g212650' => 'hma', 'Hma1.2p1_2156F.1_g315420' => 'hma', 'Hma1.2p1_2686F.1_g326940' => 'hma', 'HPP92_006428' => 'vpl', 'HPP92_012069' => 'vpl', 'HPP92_014129' => 'vpl', 'HPP92_014133' => 'vpl', 'HPP92_017315' => 'vpl', 'HPP92_026445' => 'vpl', 'HPP92_026446' => 'vpl', 'Hund00774' => 'sun', 'Hund07682' => 'sun', 'Hund21413' => 'sun', 'Hund23462' => 'sun', 'Hund23463' => 'sun', 'Lalb_Chr03g0027911' => 'lal', 'Lalb_Chr13g0304271' => 'lal', 'Lalb_Chr19g0137471' => 'lal', 'Lalb_Chr22g0350651' => 'lal', 'Lalb_Chr24g0395151' => 'lal', 'Lj1A1231T40' => 'lonja', 'Lj1A221T48' => 'lonja', 'Lj1C924T12' => 'lonja', 'Lj2C993G6' => 'lonja', 'Lj3g0005790' => 'lja', 'Lj3g0015432' => 'lja', 'Lj3g0017722' => 'lja', 'Lj3g0018497' => 'lja', 'Lj4g0025071' => 'lja', 'Lsat_1_v5_gn_1_129680' => 'lsa', 'Lsat_1_v5_gn_2_25321' => 'lsa', 'Lsat_1_v5_gn_2_95461' => 'lsa', 'Lsat_1_v5_gn_4_159620' => 'lsa', 'Lsat_1_v5_gn_6_41301' => 'lsa', 'Lsat_1_v5_gn_6_74660' => 'lsa', 'Lsat_1_v5_gn_7_11520' => 'lsa', 'Lsat_1_v5_gn_9_67680' => 'lsa', 'Manes.04G008300' => 'mes', 'Manes.04G008400' => 'mes', 'Manes.04G026500' => 'mes', 'Manes.10G135300' => 'mes', 'Manes.11G157300' => 'mes', 'Manes.12G074000' => 'mes', 'Manes.16G006200' => 'mes', 'Manes.17G026400' => 'mes', 'Mapoly0024s0086' => 'mpo', 'Mapoly0024s0087' => 'mpo', 'Mapoly0071s0057' => 'mpo', 'Mapoly0204s0012' => 'mpo', 'MBI04_g37681_MAGBIO' => 'mbi', 'MBI05_g17779_MAGBIO' => 'mbi', 'MBI12_g31184_MAGBIO' => 'mbi', 'MBI17_g11083_MAGBIO' => 'mbi', 'MBI18_g03883_MAGBIO' => 'mbi', 'MBI18_g28940_MAGBIO' => 'mbi', 'MCO01G690' => 'mco', 'MD03G1109900' => 'mdo', 'MD03G1134800' => 'mdo', 'MD05G1348000' => 'mdo', 'MD10G1322400' => 'mdo', 'MD11G1123300' => 'mdo', 'MD11G1157600' => 'mdo', 'Medtr2g084875' => 'mtr', 'Medtr2g088130' => 'mtr', 'Medtr4g055310' => 'mtr', 'Medtr4g061070' => 'mtr', 'Medtr4g132250' => 'mtr', 'MELO3C004795.2' => 'cme', 'MELO3C004797.2' => 'cme', 'MELO3C007396.2' => 'cme', 'MELO3C019277.2' => 'cme', 'MELO3C021449.2' => 'cme', 'MELO3C025736.2' => 'cme', 'Migut.D02175' => 'egut', 'Migut.H01573' => 'egut', 'Migut.M01327' => 'egut', 'Migut.N02513' => 'egut', 'MSTRG.14638' => 'ama', 'MSTRG.18632' => 'ama', 'MSTRG.7203' => 'ama', 'Nitab4.5_0000533g0140' => 'nta', 'Nitab4.5_0000888g0150' => 'nta', 'Nitab4.5_0001453g0040' => 'nta', 'Nitab4.5_0002827g0090' => 'nta', 'Nitab4.5_0003082g0040' => 'nta', 'Nitab4.5_0007799g0040' => 'nta', 'Nitab4.5_0008983g0010' => 'nta', 'Nitab4.5_0009017g0020' => 'nta', 'Nn1g02132' => 'nnu', 'Nn1g03492' => 'nnu', 'Nn1g03493' => 'nnu', 'Nn1g03494' => 'nnu', 'Nn1g07164' => 'nnu', 'Nn1g07291' => 'nnu', 'Nn2g10655' => 'nnu', 'Nn2g11652' => 'nnu', 'Nn2g14008' => 'nnu', 'Nn3g17476' => 'nnu', 'Nn3g17477' => 'nnu', 'Nn4g22370' => 'nnu', 'Nn4g25255' => 'nnu', 'Nn5g27755' => 'nnu', 'Nn6g34260' => 'nnu', 'Nn6g35041' => 'nnu', 'Oeu005924.1' => 'oeu', 'Oeu008383.1' => 'oeu', 'Oeu014928.1' => 'oeu', 'Oeu019889.1' => 'oeu', 'Oeu022271.1' => 'oeu', 'Oeu025271.1' => 'oeu', 'Oeu036302.1' => 'oeu', 'Oeu044100.1' => 'oeu', 'Os01g0528300' => 'osa', 'Os03g0286200' => 'osa', 'Os04g0406600' => 'osa', 'Os07g0512000' => 'osa', 'Os07g0694600' => 'osa', 'Os08g0411000' => 'osa', 'Os09g0565700' => 'osa', 'Os09g0566050' => 'osa', 'Os10g0523700' => 'osa', 'Peaxi162Scf00002g00514' => 'pax', 'Peaxi162Scf00047g01817' => 'pax', 'Peaxi162Scf00114g00001' => 'pax', 'Peaxi162Scf00147g00613' => 'pax', 'Peaxi162Scf00389g00425' => 'pax', 'PGR042G1139' => 'pgr', 'PGR042G3273' => 'pgr', 'PGR102G2180' => 'pgr', 'PGR119G0234' => 'pgr', 'PGR119G0668' => 'pgr', 'PGSC0003DMG400007122' => 'stu', 'PGSC0003DMG400016478' => 'stu', 'PGSC0003DMG400025374' => 'stu', 'PGSC0003DMG400026536' => 'stu', 'Phvul.003G079600' => 'pvu', 'Phvul.005G115600' => 'pvu', 'Phvul.005G127100' => 'pvu', 'Phvul.006G149500' => 'pvu', 'Phvul.006G149600' => 'pvu', 'Phvul.011G071800' => 'pvu', 'Phvul.011G090400' => 'pvu', 'Potri.004G013400' => 'ptr', 'Potri.004G188100' => 'ptr', 'Potri.008G195500' => 'ptr', 'Potri.009G148800' => 'ptr', 'Potri.011G004700' => 'ptr', 'Pp3c17_22810' => 'ppa', 'Pp3c18_4480' => 'ppa', 'Pp3c19_13030' => 'ppa', 'Pp3c1_33620' => 'ppa', 'Pp3c2_9380' => 'ppa', 'PRCOL_00001023' => 'pco', 'Prupe.3G216300' => 'ppe', 'Prupe.4G019500' => 'ppe', 'Prupe.6G092500' => 'ppe', 'Prupe.6G119200' => 'ppe', 'Psat0s1945g0080' => 'psa', 'Psat0s4167g0040' => 'psa', 'Psat1g185800' => 'psa', 'Psat4g006440' => 'psa', 'Psat4g006480' => 'psa', 'Psat4g168120' => 'psa', 'Psat5g255680' => 'psa', 'Psat5g261760' => 'psa', 'Psat7g222120' => 'psa', 'PSO063G7252' => 'pso', 'PSO170G4778' => 'pso', 'PSO210G2249' => 'pso', 'PSO339G2411' => 'pso', 'PSO339G2457' => 'pso', 'PSO339G2854' => 'pso', 'PSO339G4288' => 'pso', 'PSO339G4615' => 'pso', 'PSO384G2796' => 'pso', 'PSO384G2940' => 'pso', 'PSO384G4227' => 'pso', 'PSO478G1425' => 'pso', 'PSO541G3863' => 'pso', 'PSO675G0507' => 'pso', 'PSO782G0338' => 'pso', 'PSO832G0644' => 'pso', 'QL01p013664' => 'qlo', 'QL01p036598' => 'qlo', 'QL05p072984' => 'qlo', 'QL08p005768' => 'qlo', 'QL08p032743' => 'qlo', 'QL93p0073_0439' => 'qlo', 'QL93p0073_0444' => 'qlo', 'RcHm_v2.0_Chr5g0002851' => 'rch', 'RcHm_v2.0_Chr5g0055201' => 'rch', 'RcHm_v2.0_Chr5g0061191' => 'rch', 'RcHm_v2.0_Chr7g0203231' => 'rch', 'Rhsim01G0208100' => 'rsi', 'Rhsim01G0208200' => 'rsi', 'Rhsim02G0106500' => 'rsi', 'Rhsim03G0107900' => 'rsi', 'Rhsim06G0163400' => 'rsi', 'Rhsim13G0105200' => 'rsi', 'Sabra04G0006300' => 'sbr', 'Sabra04G0127000' => 'sbr', 'Sabra08G0148700' => 'sbr', 'Sabra09G0117400' => 'sbr', 'SalBow1G3326' => 'sbo', 'SalBow3G3228' => 'sbo', 'SalBow6G1634' => 'sbo', 'SalBow6G3603' => 'sbo', 'SalBow6G5266' => 'sbo', 'SalBow7G2265' => 'sbo', 'SalBow8G0850' => 'sbo', 'SalBow8G2592' => 'sbo', 'Sc05g0009240' => 'sci', 'Sc12g0002300' => 'sci', 'Sc21g0000100' => 'sci', 'Sc21g0004720' => 'sci', 'Sed0002949' => 'sed', 'Sed0004114' => 'sed', 'Sed0004306' => 'sed', 'Sed0006172' => 'sed', 'Sed0008413' => 'sed', 'Sed0013809' => 'sed', 'Sed0019556' => 'sed', 'SEGI_03570' => 'sgi', 'SEGI_07859' => 'sgi', 'SEGI_15042' => 'sgi', 'SEGI_16263' => 'sgi', 'SEGI_16552' => 'sgi', 'SEGI_24331' => 'sgi', 'SEGI_27316' => 'sgi', 'SEGI_29521' => 'sgi', 'SEGI_41342' => 'sgi', 'SGA_v2.0_scaffold27G11617' => 'sas', 'SGA_v2.0_scaffold316G48428' => 'sas', 'SGA_v2.0_scaffold49G18261' => 'sas', 'SGA_v2.0_scaffold7G03831' => 'sas', 'SGA_v2.0_scaffold93G28359' => 'sas', 'SHI02210' => 'shi', 'SHI06028' => 'shi', 'SHI06321' => 'shi', 'SMO111G0012' => 'smo', 'SMO228G0080' => 'smo', 'SMO356G0756' => 'smo', 'Solyc02g080620.3' => 'sly', 'Solyc06g074530.1' => 'sly', 'Solyc11g066890.1' => 'sly', 'Solyc11g072520.3' => 'sly', 'Sopen02g025330' => 'spe', 'Sopen06g031000' => 'spe', 'Sopen09g008240' => 'spe', 'Sopen09g025210' => 'spe', 'Sopen11g026600' => 'spe', 'Sopen11g030170' => 'spe', 'Sp1g10420' => 'spa', 'Sp3g06570' => 'spa', 'Sp4g10660' => 'spa', 'Sp5g16460' => 'spa', 'Sp6g22710' => 'spa', 'TAR365G0112' => 'tar', 'TAR369G0717' => 'tar', 'TAR374G0976' => 'tar', 'TAR623G1128' => 'tar', 'TAR626G1937' => 'tar', 'TAR627G0123' => 'tar', 'TAR628G0305' => 'tar', 'TAR636G1176' => 'tar', 'TAR636G2442' => 'tar', 'THA.LOC104800556' => 'tha', 'THA.LOC104809501' => 'tha', 'THA.LOC104815126' => 'tha', 'THA.LOC104815732' => 'tha', 'THA.LOC104823528' => 'tha', 'Thecc.02G365600' => 'tca', 'Thecc.06G222300' => 'tca', 'Thecc.09G261800' => 'tca', 'Thecc.09G291400' => 'tca', 'Thhalv10003028m.g' => 'esa', 'Thhalv10007886m.g' => 'esa', 'Thhalv10016085m.g' => 'esa', 'Thhalv10016681m.g' => 'esa', 'Thhalv10020951m.g' => 'esa', 'TPR.G15598' => 'tpr', 'TPR.G29305' => 'tpr', 'TPR.G32395' => 'tpr', 'TPR.G36998' => 'tpr', 'TPR.G4227' => 'tpr', 'TWI18G1433' => 'twi', 'TWI31G0755' => 'twi', 'TWI38G0912' => 'twi', 'TWI75G1097' => 'twi', 'TWI75G1619' => 'twi', 'TWI79G1336' => 'twi', 'unitig_0.g943' => 'ugi', 'unitig_0.g944' => 'ugi', 'unitig_22.g6646' => 'ugi', 'unitig_37.g12681' => 'ugi', 'unitig_8.g3290' => 'ugi', 'vmacro03278' => 'vma', 'vmacro12197' => 'vma', 'vmacro14478' => 'vma', 'vmacro15787' => 'vma', 'vmacro15789' => 'vma', 'vmacro15790' => 'vma', 'vmacro15806' => 'vma', 'vmacro22907' => 'vma', 'vmacro22908' => 'vma', 'vmacro22909' => 'vma', 'vmacro23108' => 'vma', 'VMungo0540G0540' => 'vmu', 'VMungo0540G2468' => 'vmu', 'VMungo1080G0390' => 'vmu', 'VMungo1080G1165' => 'vmu', 'VMungo1127G0170' => 'vmu', 'VMungo1127G2099' => 'vmu', 'VMungo1215G3013' => 'vmu', 'Zm00001eb013110' => 'zma', 'Zm00001eb084260' => 'zma', 'Zm00001eb096110' => 'zma', 'Zm00001eb217510' => 'zma', 'Zm00001eb322550' => 'zma', 'Zm00001eb390770' => 'zma', 'Zm00001eb397170' => 'zma', 'Zm00001eb404610' => 'zma', 'Zm00001eb421790' => 'zma' ) $gf_id = 'HOM05D000911' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000911' ) $data_identifier = 'HOM05D000911' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 16, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 5, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 6, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 8, 'nnu' => (int) 16, 'oeu' => (int) 8, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 5, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 16, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421790' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000911', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27780' => 'bna', 'A03p35380' => 'bna', 'A04p21160' => 'bna', 'A05p40570' => 'bna', 'A06p26900' => 'bna', 'A08p33230' => 'bna', 'A09p65960' => 'bna', 'A10p18290' => 'bna', 'Aa31LG1G12990' => 'aar', 'Aa31LG1G2980' => 'aar', 'Aa31LG4G14320' => 'aar', 'Aa31LG7G11800' => 'aar', 'Aa31sc36G50' => 'aar', 'Aa31sc36G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3721' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5459' => 'aag', 'Actinidia03028' => 'ach', 'Actinidia03753' => 'ach', 'Actinidia04187' => 'ach', 'Actinidia05509' => 'ach', 'Actinidia24180' => 'ach', 'Actinidia26906' => 'ach', 'Actinidia37097' => 'ach', 'Actinidia38249' => 'ach', 'Ah.01g003470' => 'amhyb', 'Ah.01g004580' => 'amhyb', 'Ah.01g014850' => 'amhyb', 'Ah.01g016830' => 'amhyb', 'Ah.14g088000' => 'amhyb', 'AL1G22980' => 'aly', 'AL3G18990' => 'aly', 'AL4G22440' => 'aly', 'AL4G33180' => 'aly', 'AL5G22920' => 'aly', 'AL6G33660' => 'aly', 'AL8G20720' => 'aly', 'Aqoxy1G00935' => 'aox', 'Aqoxy1G02094' => 'aox', 'Aqoxy2G01239' => 'aox', 'Aqoxy4G01870' => 'aox', 'Aqoxy7G00450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.36ZVTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71EM27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5D6C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH3WRE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3NCM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RIM768' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YB5YRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z36GDV' => 'arhy', 'AT1G08250' => 'ath', 'AT1G11790' => 'ath', 'AT2G27820' => 'ath', 'AT3G07630' => 'ath', 'AT3G44720' => 'ath', 'AT5G22630' => 'ath', 'ATR0693G304' => 'atr', 'ATR0794G109' => 'atr', 'ATR0820G120' => 'atr', 'ATR1159G064' => 'atr', 'Atru.chr10.2239' => 'acertr', 'Atru.chr3.3371' => 'acertr', 'Atru.chr6.3202' => 'acertr', 'AUR62006499' => 'cqu', 'AUR62012718' => 'cqu', 'AUR62021938' => 'cqu', 'AUR62023932' => 'cqu', 'AUR62025034' => 'cqu', 'AUR62025035' => 'cqu', 'AUR62038307' => 'cqu', 'AUR62043466' => 'cqu', 'BcaB02g10748' => 'bca', 'BcaB03g13231' => 'bca', 'BcaB03g14689' => 'bca', 'BcaB05g22716' => 'bca', 'BcaB06g28172' => 'bca', 'BcaB08g36413' => 'bca', 'BcaC01g02186' => 'bca', 'BcaC01g04272' => 'bca', 'BcaC02g08080' => 'bca', 'BcaC02g08227' => 'bca', 'BcaC03g13901' => 'bca', 'BcaC04g19593' => 'bca', 'BcaC04g20874' => 'bca', 'BcaC05g29557' => 'bca', 'BcaC06g35505' => 'bca', 'BcaC07g41954' => 'bca', 'BcaC07g41955' => 'bca', 'BcaC07g41956' => 'bca', 'BcaC07g42519' => 'bca', 'BcaC07g42520' => 'bca', 'BcaC07g42523' => 'bca', 'BcaC07g42524' => 'bca', 'BcaC07g42525' => 'bca', 'BcaC08g47480' => 'bca', 'BcaC08g47481' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00530' => 'bna', 'BolC2t07178H' => 'bol', 'BolC3t16567H' => 'bol', 'BolC4t27234H' => 'bol', 'BolC5t29728H' => 'bol', 'BolC5t34622H' => 'bol', 'BolC6t40321H' => 'bol', 'BolC7t42028H' => 'bol', 'BolC8t49125H' => 'bol', 'BolC8t52538H' => 'bol', 'BolC8t52539H' => 'bol', 'BolC9t56681H' => 'bol', 'BolC9t58266H' => 'bol', 'BolSC21t60294H' => 'bol', 'BraA02t05670Z' => 'bra', 'BraA03t12716Z' => 'bra', 'BraA04t17685Z' => 'bra', 'BraA05t22788Z' => 'bra', 'BraA06t24032Z' => 'bra', 'BraA06t25625Z' => 'bra', 'BraA07t27930Z' => 'bra', 'BraA08t35242Z' => 'bra', 'BraA09t38609Z' => 'bra', 'BraA10t43905Z' => 'bra', 'C02p11060' => 'bna', 'C03p42990' => 'bna', 'C03p67310' => 'bna', 'C04p56990' => 'bna', 'C04p58660' => 'bna', 'C05p09890' => 'bna', 'C05p59680' => 'bna', 'C06p19830' => 'bna', 'C06p53040' => 'bna', 'C07p15230' => 'bna', 'C08p50070' => 'bna', 'C08p50090' => 'bna', 'C09p38330' => 'bna', 'C09p53940' => 'bna', 'CAN.G1014.1' => 'can', 'CAN.G644.30' => 'can', 'CAN.G84.47' => 'can', 'CAN.G919.8' => 'can', 'CANSAT54G0113' => 'cansat', 'CANSAT54G1286' => 'cansat', 'CANSAT64G1020' => 'cansat', 'CARHR008080' => 'chi', 'CARHR008090' => 'chi', 'CARHR012130' => 'chi', 'CARHR038390' => 'chi', 'CARHR082330' => 'chi', 'CARHR120520' => 'chi', 'CARHR151470' => 'chi', 'CARHR190950' => 'chi', 'Carub.0001s0760' => 'cru', 'Carub.0001s1146' => 'cru', 'Carub.0003s0721' => 'cru', 'Carub.0004s0858' => 'cru', 'Carub.0005s1040' => 'cru', 'Carub.0006s2035' => 'cru', 'Carub.0015s0005' => 'cru', 'Ca_01607_v3' => 'car', 'Ca_01677_v3' => 'car', 'Ca_06087_v3' => 'car', 'Ca_19238_v3' => 'car', 'Ca_19373_v3' => 'car', 'Ca_21079_v3' => 'car', 'CBR_g54016' => 'cbr', 'CBR_g54018' => 'cbr', 'CBR_g54020' => 'cbr', 'Cc01_g09780' => 'ccan', 'Cc01_g11680' => 'ccan', 'Cc02_g15610' => 'ccan', 'Cc05_g04350' => 'ccan', 'Cc09_g01580' => 'ccan', 'CDE01G0795' => 'cde', 'CDE02G2024' => 'cde', 'CDE02G2260' => 'cde', 'CDE02G4561' => 'cde', 'CDE05G2733' => 'cde', 'CDE05G3422' => 'cde', 'CDE06G2003' => 'cde', 'CDE08G0576' => 'cde', 'CDE09G0048' => 'cde', 'CDE11G0805' => 'cde', 'Cfa003644' => 'cfa', 'Cfa006290' => 'cfa', 'Cfa010080' => 'cfa', 'Cfa011376' => 'cfa', 'Cfa011576' => 'cfa', 'Cfa011577' => 'cfa', 'Cfa014389' => 'cfa', 'Ciclev10006044m.g' => 'ccl', 'Ciclev10006954m.g' => 'ccl', 'Ciclev10015131m.g' => 'ccl', 'Ciclev10015580m.g' => 'ccl', 'Ciclev10028359m.g' => 'ccl', 'Ciclev10028573m.g' => 'ccl', 'CiPaw.03G159300' => 'cil', 'CiPaw.04G115100' => 'cil', 'CiPaw.09G092800' => 'cil', 'CiPaw.10G071800' => 'cil', 'CiPaw.13G105800' => 'cil', 'CiPaw.13G141000' => 'cil', 'CiPaw.14G103400' => 'cil', 'ClCG01G012700' => 'cla', 'ClCG01G012720' => 'cla', 'ClCG01G021920' => 'cla', 'ClCG02G008870' => 'cla', 'ClCG02G020840' => 'cla', 'ClCG02G021930' => 'cla', 'COL.COLO4_19302' => 'col', 'COL.COLO4_25262' => 'col', 'COL.COLO4_31788' => 'col', 'Cpa.g.c34684' => 'cpa', 'Cpa.g.c36520.1' => 'cpa', 'Cpa.g.c45626' => 'cpa', 'Cpa.g.sc121.17' => 'cpa', 'Cpa.g.sc13.22' => 'cpa', 'Cpa.g.sc87.88' => 'cpa', 'Cre06.g261800' => 'cre', 'CsaV3_1G014500' => 'csa', 'CsaV3_1G014510' => 'csa', 'CsaV3_2G034880' => 'csa', 'CsaV3_6G014760' => 'csa', 'CsaV3_6G021500' => 'csa', 'CsaV3_6G048980' => 'csa', 'CSS0002511' => 'camsi', 'CSS0007556' => 'camsi', 'CSS0008532' => 'camsi', 'CSS0009709' => 'camsi', 'CSS0010486' => 'camsi', 'CSS0016768' => 'camsi', 'CSS0023512' => 'camsi', 'CSS0025341' => 'camsi', 'CSS0027999' => 'camsi', 'CSS0028944' => 'camsi', 'CSS0032292' => 'camsi', 'CSS0032464' => 'camsi', 'CSS0037153' => 'camsi', 'CSS0039256' => 'camsi', 'CSS0048392' => 'camsi', 'CSS0050458' => 'camsi', 'DCAR_004224' => 'dca', 'DCAR_006147' => 'dca', 'DCAR_006465' => 'dca', 'DCAR_008159' => 'dca', 'DCAR_012164' => 'dca', 'DCAR_019764' => 'dca', 'Dinv05418' => 'din', 'Dinv10839' => 'din', 'Dinv12521' => 'din', 'Dinv13900' => 'din', 'Dinv29426' => 'din', 'Duzib150G0263' => 'dzi', 'Duzib168G1178' => 'dzi', 'Duzib168G1924' => 'dzi', 'Duzib170G0299' => 'dzi', 'Duzib170G0813' => 'dzi', 'Duzib235G1128' => 'dzi', 'Duzib248G1060' => 'dzi', 'ECA232G1910' => 'eca', 'ECA233G4621' => 'eca', 'ECA238G1216' => 'eca', 'ECA238G1784' => 'eca', 'ECA248G1242' => 'eca', 'EL10Ac8g20071' => 'bvu', 'EL10Ac9g21086' => 'bvu', 'EL10Ac9g22407' => 'bvu', 'EL10Ac9g22412' => 'bvu', 'Eucgr.A01119' => 'egr', 'Eucgr.E04043' => 'egr', 'Eucgr.J00428' => 'egr', 'Eucgr.J00958' => 'egr', 'FAN11G3091' => 'fan', 'FAN11G3651' => 'fan', 'FAN16G2566' => 'fan', 'FAN21G3155' => 'fan', 'FAN21G3400' => 'fan', 'FAN21G3543' => 'fan', 'FAN25G0234' => 'fan', 'FAN25G1422' => 'fan', 'FAN25G3392' => 'fan', 'FvH4_3g01940' => 'fve', 'FvH4_3g29870' => 'fve', 'FvH4_3g33680' => 'fve', 'Glyma.09G004200' => 'gma', 'Glyma.11G151288' => 'gma', 'Glyma.11G189100' => 'gma', 'Glyma.12G072500' => 'gma', 'Glyma.12G085500' => 'gma', 'Glyma.12G181800' => 'gma', 'Glyma.12G193000' => 'gma', 'Glyma.13G309300' => 'gma', 'Glyma.13G319000' => 'gma', 'Glyma.17G012600' => 'gma', 'Gohir.A06G148600' => 'ghi', 'Gohir.A07G115800' => 'ghi', 'Gohir.A08G003600' => 'ghi', 'Gohir.A09G093300' => 'ghi', 'Gohir.A09G105400' => 'ghi', 'Gohir.A09G105500' => 'ghi', 'Gohir.D06G154600' => 'ghi', 'Gohir.D07G120200' => 'ghi', 'Gohir.D08G013900' => 'ghi', 'Gohir.D09G093100' => 'ghi', 'Gohir.D09G102200' => 'ghi', 'Gohir.D09G102300' => 'ghi', 'Gorai.001G129400' => 'gra', 'Gorai.004G008200' => 'gra', 'Gorai.006G109800' => 'gra', 'Gorai.006G119500' => 'gra', 'Gorai.006G121300' => 'gra', 'Gorai.010G180700' => 'gra', 'GSVIVG01012716001' => 'vvi', 'GSVIVG01025118001' => 'vvi', 'GSVIVG01030439001' => 'vvi', 'GSVIVG01031397001' => 'vvi', 'HanXRQChr01g0004201' => 'han', 'HanXRQChr02g0054941' => 'han', 'HanXRQChr05g0141811' => 'han', 'HanXRQChr07g0197751' => 'han', 'HanXRQChr11g0346691' => 'han', 'HanXRQChr13g0396971' => 'han', 'HanXRQChr14g0432951' => 'han', 'HanXRQChr14g0452001' => 'han', 'HanXRQChr15g0496681' => 'han', 'HanXRQChr17g0557491' => 'han', 'HanXRQChr17g0557501' => 'han', 'Haze_06809' => 'cav', 'Haze_12852' => 'cav', 'Haze_15850' => 'cav', 'Haze_23446' => 'cav', 'Haze_23942' => 'cav', 'Haze_23943' => 'cav', 'Hma1.2p1_0091F.1_g046450' => 'hma', 'Hma1.2p1_0128F.1_g059910' => 'hma', 'Hma1.2p1_0249F.1_g102260' => 'hma', 'Hma1.2p1_0453F.1_g156190' => 'hma', 'Hma1.2p1_0695F.1_g204380' => 'hma', 'Hma1.2p1_0749F.1_g212650' => 'hma', 'Hma1.2p1_2156F.1_g315420' => 'hma', 'Hma1.2p1_2686F.1_g326940' => 'hma', 'HPP92_006428' => 'vpl', 'HPP92_012069' => 'vpl', 'HPP92_014129' => 'vpl', 'HPP92_014133' => 'vpl', 'HPP92_017315' => 'vpl', 'HPP92_026445' => 'vpl', 'HPP92_026446' => 'vpl', 'Hund00774' => 'sun', 'Hund07682' => 'sun', 'Hund21413' => 'sun', 'Hund23462' => 'sun', 'Hund23463' => 'sun', 'Lalb_Chr03g0027911' => 'lal', 'Lalb_Chr13g0304271' => 'lal', 'Lalb_Chr19g0137471' => 'lal', 'Lalb_Chr22g0350651' => 'lal', 'Lalb_Chr24g0395151' => 'lal', 'Lj1A1231T40' => 'lonja', 'Lj1A221T48' => 'lonja', 'Lj1C924T12' => 'lonja', 'Lj2C993G6' => 'lonja', 'Lj3g0005790' => 'lja', 'Lj3g0015432' => 'lja', 'Lj3g0017722' => 'lja', 'Lj3g0018497' => 'lja', 'Lj4g0025071' => 'lja', 'Lsat_1_v5_gn_1_129680' => 'lsa', 'Lsat_1_v5_gn_2_25321' => 'lsa', 'Lsat_1_v5_gn_2_95461' => 'lsa', 'Lsat_1_v5_gn_4_159620' => 'lsa', 'Lsat_1_v5_gn_6_41301' => 'lsa', 'Lsat_1_v5_gn_6_74660' => 'lsa', 'Lsat_1_v5_gn_7_11520' => 'lsa', 'Lsat_1_v5_gn_9_67680' => 'lsa', 'Manes.04G008300' => 'mes', 'Manes.04G008400' => 'mes', 'Manes.04G026500' => 'mes', 'Manes.10G135300' => 'mes', 'Manes.11G157300' => 'mes', 'Manes.12G074000' => 'mes', 'Manes.16G006200' => 'mes', 'Manes.17G026400' => 'mes', 'Mapoly0024s0086' => 'mpo', 'Mapoly0024s0087' => 'mpo', 'Mapoly0071s0057' => 'mpo', 'Mapoly0204s0012' => 'mpo', 'MBI04_g37681_MAGBIO' => 'mbi', 'MBI05_g17779_MAGBIO' => 'mbi', 'MBI12_g31184_MAGBIO' => 'mbi', 'MBI17_g11083_MAGBIO' => 'mbi', 'MBI18_g03883_MAGBIO' => 'mbi', 'MBI18_g28940_MAGBIO' => 'mbi', 'MCO01G690' => 'mco', 'MD03G1109900' => 'mdo', 'MD03G1134800' => 'mdo', 'MD05G1348000' => 'mdo', 'MD10G1322400' => 'mdo', 'MD11G1123300' => 'mdo', 'MD11G1157600' => 'mdo', 'Medtr2g084875' => 'mtr', 'Medtr2g088130' => 'mtr', 'Medtr4g055310' => 'mtr', 'Medtr4g061070' => 'mtr', 'Medtr4g132250' => 'mtr', 'MELO3C004795.2' => 'cme', 'MELO3C004797.2' => 'cme', 'MELO3C007396.2' => 'cme', 'MELO3C019277.2' => 'cme', 'MELO3C021449.2' => 'cme', 'MELO3C025736.2' => 'cme', 'Migut.D02175' => 'egut', 'Migut.H01573' => 'egut', 'Migut.M01327' => 'egut', 'Migut.N02513' => 'egut', 'MSTRG.14638' => 'ama', 'MSTRG.18632' => 'ama', 'MSTRG.7203' => 'ama', 'Nitab4.5_0000533g0140' => 'nta', 'Nitab4.5_0000888g0150' => 'nta', 'Nitab4.5_0001453g0040' => 'nta', 'Nitab4.5_0002827g0090' => 'nta', 'Nitab4.5_0003082g0040' => 'nta', 'Nitab4.5_0007799g0040' => 'nta', 'Nitab4.5_0008983g0010' => 'nta', 'Nitab4.5_0009017g0020' => 'nta', 'Nn1g02132' => 'nnu', 'Nn1g03492' => 'nnu', 'Nn1g03493' => 'nnu', 'Nn1g03494' => 'nnu', 'Nn1g07164' => 'nnu', 'Nn1g07291' => 'nnu', 'Nn2g10655' => 'nnu', 'Nn2g11652' => 'nnu', 'Nn2g14008' => 'nnu', 'Nn3g17476' => 'nnu', 'Nn3g17477' => 'nnu', 'Nn4g22370' => 'nnu', 'Nn4g25255' => 'nnu', 'Nn5g27755' => 'nnu', 'Nn6g34260' => 'nnu', 'Nn6g35041' => 'nnu', 'Oeu005924.1' => 'oeu', 'Oeu008383.1' => 'oeu', 'Oeu014928.1' => 'oeu', 'Oeu019889.1' => 'oeu', 'Oeu022271.1' => 'oeu', 'Oeu025271.1' => 'oeu', 'Oeu036302.1' => 'oeu', 'Oeu044100.1' => 'oeu', 'Os01g0528300' => 'osa', 'Os03g0286200' => 'osa', 'Os04g0406600' => 'osa', 'Os07g0512000' => 'osa', 'Os07g0694600' => 'osa', 'Os08g0411000' => 'osa', 'Os09g0565700' => 'osa', 'Os09g0566050' => 'osa', 'Os10g0523700' => 'osa', 'Peaxi162Scf00002g00514' => 'pax', 'Peaxi162Scf00047g01817' => 'pax', 'Peaxi162Scf00114g00001' => 'pax', 'Peaxi162Scf00147g00613' => 'pax', 'Peaxi162Scf00389g00425' => 'pax', 'PGR042G1139' => 'pgr', 'PGR042G3273' => 'pgr', 'PGR102G2180' => 'pgr', 'PGR119G0234' => 'pgr', 'PGR119G0668' => 'pgr', 'PGSC0003DMG400007122' => 'stu', 'PGSC0003DMG400016478' => 'stu', 'PGSC0003DMG400025374' => 'stu', 'PGSC0003DMG400026536' => 'stu', 'Phvul.003G079600' => 'pvu', 'Phvul.005G115600' => 'pvu', 'Phvul.005G127100' => 'pvu', 'Phvul.006G149500' => 'pvu', 'Phvul.006G149600' => 'pvu', 'Phvul.011G071800' => 'pvu', 'Phvul.011G090400' => 'pvu', 'Potri.004G013400' => 'ptr', 'Potri.004G188100' => 'ptr', 'Potri.008G195500' => 'ptr', 'Potri.009G148800' => 'ptr', 'Potri.011G004700' => 'ptr', 'Pp3c17_22810' => 'ppa', 'Pp3c18_4480' => 'ppa', 'Pp3c19_13030' => 'ppa', 'Pp3c1_33620' => 'ppa', 'Pp3c2_9380' => 'ppa', 'PRCOL_00001023' => 'pco', 'Prupe.3G216300' => 'ppe', 'Prupe.4G019500' => 'ppe', 'Prupe.6G092500' => 'ppe', 'Prupe.6G119200' => 'ppe', 'Psat0s1945g0080' => 'psa', 'Psat0s4167g0040' => 'psa', 'Psat1g185800' => 'psa', 'Psat4g006440' => 'psa', 'Psat4g006480' => 'psa', 'Psat4g168120' => 'psa', 'Psat5g255680' => 'psa', 'Psat5g261760' => 'psa', 'Psat7g222120' => 'psa', 'PSO063G7252' => 'pso', 'PSO170G4778' => 'pso', 'PSO210G2249' => 'pso', 'PSO339G2411' => 'pso', 'PSO339G2457' => 'pso', 'PSO339G2854' => 'pso', 'PSO339G4288' => 'pso', 'PSO339G4615' => 'pso', 'PSO384G2796' => 'pso', 'PSO384G2940' => 'pso', 'PSO384G4227' => 'pso', 'PSO478G1425' => 'pso', 'PSO541G3863' => 'pso', 'PSO675G0507' => 'pso', 'PSO782G0338' => 'pso', 'PSO832G0644' => 'pso', 'QL01p013664' => 'qlo', 'QL01p036598' => 'qlo', 'QL05p072984' => 'qlo', 'QL08p005768' => 'qlo', 'QL08p032743' => 'qlo', 'QL93p0073_0439' => 'qlo', 'QL93p0073_0444' => 'qlo', 'RcHm_v2.0_Chr5g0002851' => 'rch', 'RcHm_v2.0_Chr5g0055201' => 'rch', 'RcHm_v2.0_Chr5g0061191' => 'rch', 'RcHm_v2.0_Chr7g0203231' => 'rch', 'Rhsim01G0208100' => 'rsi', 'Rhsim01G0208200' => 'rsi', 'Rhsim02G0106500' => 'rsi', 'Rhsim03G0107900' => 'rsi', 'Rhsim06G0163400' => 'rsi', 'Rhsim13G0105200' => 'rsi', 'Sabra04G0006300' => 'sbr', 'Sabra04G0127000' => 'sbr', 'Sabra08G0148700' => 'sbr', 'Sabra09G0117400' => 'sbr', 'SalBow1G3326' => 'sbo', 'SalBow3G3228' => 'sbo', 'SalBow6G1634' => 'sbo', 'SalBow6G3603' => 'sbo', 'SalBow6G5266' => 'sbo', 'SalBow7G2265' => 'sbo', 'SalBow8G0850' => 'sbo', 'SalBow8G2592' => 'sbo', 'Sc05g0009240' => 'sci', 'Sc12g0002300' => 'sci', 'Sc21g0000100' => 'sci', 'Sc21g0004720' => 'sci', 'Sed0002949' => 'sed', 'Sed0004114' => 'sed', 'Sed0004306' => 'sed', 'Sed0006172' => 'sed', 'Sed0008413' => 'sed', 'Sed0013809' => 'sed', 'Sed0019556' => 'sed', 'SEGI_03570' => 'sgi', 'SEGI_07859' => 'sgi', 'SEGI_15042' => 'sgi', 'SEGI_16263' => 'sgi', 'SEGI_16552' => 'sgi', 'SEGI_24331' => 'sgi', 'SEGI_27316' => 'sgi', 'SEGI_29521' => 'sgi', 'SEGI_41342' => 'sgi', 'SGA_v2.0_scaffold27G11617' => 'sas', 'SGA_v2.0_scaffold316G48428' => 'sas', 'SGA_v2.0_scaffold49G18261' => 'sas', 'SGA_v2.0_scaffold7G03831' => 'sas', 'SGA_v2.0_scaffold93G28359' => 'sas', 'SHI02210' => 'shi', 'SHI06028' => 'shi', 'SHI06321' => 'shi', 'SMO111G0012' => 'smo', 'SMO228G0080' => 'smo', 'SMO356G0756' => 'smo', 'Solyc02g080620.3' => 'sly', 'Solyc06g074530.1' => 'sly', 'Solyc11g066890.1' => 'sly', 'Solyc11g072520.3' => 'sly', 'Sopen02g025330' => 'spe', 'Sopen06g031000' => 'spe', 'Sopen09g008240' => 'spe', 'Sopen09g025210' => 'spe', 'Sopen11g026600' => 'spe', 'Sopen11g030170' => 'spe', 'Sp1g10420' => 'spa', 'Sp3g06570' => 'spa', 'Sp4g10660' => 'spa', 'Sp5g16460' => 'spa', 'Sp6g22710' => 'spa', 'TAR365G0112' => 'tar', 'TAR369G0717' => 'tar', 'TAR374G0976' => 'tar', 'TAR623G1128' => 'tar', 'TAR626G1937' => 'tar', 'TAR627G0123' => 'tar', 'TAR628G0305' => 'tar', 'TAR636G1176' => 'tar', 'TAR636G2442' => 'tar', 'THA.LOC104800556' => 'tha', 'THA.LOC104809501' => 'tha', 'THA.LOC104815126' => 'tha', 'THA.LOC104815732' => 'tha', 'THA.LOC104823528' => 'tha', 'Thecc.02G365600' => 'tca', 'Thecc.06G222300' => 'tca', 'Thecc.09G261800' => 'tca', 'Thecc.09G291400' => 'tca', 'Thhalv10003028m.g' => 'esa', 'Thhalv10007886m.g' => 'esa', 'Thhalv10016085m.g' => 'esa', 'Thhalv10016681m.g' => 'esa', 'Thhalv10020951m.g' => 'esa', 'TPR.G15598' => 'tpr', 'TPR.G29305' => 'tpr', 'TPR.G32395' => 'tpr', 'TPR.G36998' => 'tpr', 'TPR.G4227' => 'tpr', 'TWI18G1433' => 'twi', 'TWI31G0755' => 'twi', 'TWI38G0912' => 'twi', 'TWI75G1097' => 'twi', 'TWI75G1619' => 'twi', 'TWI79G1336' => 'twi', 'unitig_0.g943' => 'ugi', 'unitig_0.g944' => 'ugi', 'unitig_22.g6646' => 'ugi', 'unitig_37.g12681' => 'ugi', 'unitig_8.g3290' => 'ugi', 'vmacro03278' => 'vma', 'vmacro12197' => 'vma', 'vmacro14478' => 'vma', 'vmacro15787' => 'vma', 'vmacro15789' => 'vma', 'vmacro15790' => 'vma', 'vmacro15806' => 'vma', 'vmacro22907' => 'vma', 'vmacro22908' => 'vma', 'vmacro22909' => 'vma', 'vmacro23108' => 'vma', 'VMungo0540G0540' => 'vmu', 'VMungo0540G2468' => 'vmu', 'VMungo1080G0390' => 'vmu', 'VMungo1080G1165' => 'vmu', 'VMungo1127G0170' => 'vmu', 'VMungo1127G2099' => 'vmu', 'VMungo1215G3013' => 'vmu', 'Zm00001eb013110' => 'zma', 'Zm00001eb084260' => 'zma', 'Zm00001eb096110' => 'zma', 'Zm00001eb217510' => 'zma', 'Zm00001eb322550' => 'zma', 'Zm00001eb390770' => 'zma', 'Zm00001eb397170' => 'zma', 'Zm00001eb404610' => 'zma', 'Zm00001eb421790' => 'zma' ), 'gf_id' => 'HOM05D000911', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000911' ), 'data_identifier' => 'HOM05D000911', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000911', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27780' => 'bna', 'A03p35380' => 'bna', 'A04p21160' => 'bna', 'A05p40570' => 'bna', 'A06p26900' => 'bna', 'A08p33230' => 'bna', 'A09p65960' => 'bna', 'A10p18290' => 'bna', 'Aa31LG1G12990' => 'aar', 'Aa31LG1G2980' => 'aar', 'Aa31LG4G14320' => 'aar', 'Aa31LG7G11800' => 'aar', 'Aa31sc36G50' => 'aar', 'Aa31sc36G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3721' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5459' => 'aag', 'Actinidia03028' => 'ach', 'Actinidia03753' => 'ach', 'Actinidia04187' => 'ach', 'Actinidia05509' => 'ach', 'Actinidia24180' => 'ach', 'Actinidia26906' => 'ach', 'Actinidia37097' => 'ach', 'Actinidia38249' => 'ach', 'Ah.01g003470' => 'amhyb', 'Ah.01g004580' => 'amhyb', 'Ah.01g014850' => 'amhyb', 'Ah.01g016830' => 'amhyb', 'Ah.14g088000' => 'amhyb', 'AL1G22980' => 'aly', 'AL3G18990' => 'aly', 'AL4G22440' => 'aly', 'AL4G33180' => 'aly', 'AL5G22920' => 'aly', 'AL6G33660' => 'aly', 'AL8G20720' => 'aly', 'Aqoxy1G00935' => 'aox', 'Aqoxy1G02094' => 'aox', 'Aqoxy2G01239' => 'aox', 'Aqoxy4G01870' => 'aox', 'Aqoxy7G00450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.36ZVTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71EM27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5D6C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH3WRE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3NCM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RIM768' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YB5YRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z36GDV' => 'arhy', 'AT1G08250' => 'ath', 'AT1G11790' => 'ath', 'AT2G27820' => 'ath', 'AT3G07630' => 'ath', 'AT3G44720' => 'ath', 'AT5G22630' => 'ath', 'ATR0693G304' => 'atr', 'ATR0794G109' => 'atr', 'ATR0820G120' => 'atr', 'ATR1159G064' => 'atr', 'Atru.chr10.2239' => 'acertr', 'Atru.chr3.3371' => 'acertr', 'Atru.chr6.3202' => 'acertr', 'AUR62006499' => 'cqu', 'AUR62012718' => 'cqu', 'AUR62021938' => 'cqu', 'AUR62023932' => 'cqu', 'AUR62025034' => 'cqu', 'AUR62025035' => 'cqu', 'AUR62038307' => 'cqu', 'AUR62043466' => 'cqu', 'BcaB02g10748' => 'bca', 'BcaB03g13231' => 'bca', 'BcaB03g14689' => 'bca', 'BcaB05g22716' => 'bca', 'BcaB06g28172' => 'bca', 'BcaB08g36413' => 'bca', 'BcaC01g02186' => 'bca', 'BcaC01g04272' => 'bca', 'BcaC02g08080' => 'bca', 'BcaC02g08227' => 'bca', 'BcaC03g13901' => 'bca', 'BcaC04g19593' => 'bca', 'BcaC04g20874' => 'bca', 'BcaC05g29557' => 'bca', 'BcaC06g35505' => 'bca', 'BcaC07g41954' => 'bca', 'BcaC07g41955' => 'bca', 'BcaC07g41956' => 'bca', 'BcaC07g42519' => 'bca', 'BcaC07g42520' => 'bca', 'BcaC07g42523' => 'bca', 'BcaC07g42524' => 'bca', 'BcaC07g42525' => 'bca', 'BcaC08g47480' => 'bca', 'BcaC08g47481' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00530' => 'bna', 'BolC2t07178H' => 'bol', 'BolC3t16567H' => 'bol', 'BolC4t27234H' => 'bol', 'BolC5t29728H' => 'bol', 'BolC5t34622H' => 'bol', 'BolC6t40321H' => 'bol', 'BolC7t42028H' => 'bol', 'BolC8t49125H' => 'bol', 'BolC8t52538H' => 'bol', 'BolC8t52539H' => 'bol', 'BolC9t56681H' => 'bol', 'BolC9t58266H' => 'bol', 'BolSC21t60294H' => 'bol', 'BraA02t05670Z' => 'bra', 'BraA03t12716Z' => 'bra', 'BraA04t17685Z' => 'bra', 'BraA05t22788Z' => 'bra', 'BraA06t24032Z' => 'bra', 'BraA06t25625Z' => 'bra', 'BraA07t27930Z' => 'bra', 'BraA08t35242Z' => 'bra', 'BraA09t38609Z' => 'bra', 'BraA10t43905Z' => 'bra', 'C02p11060' => 'bna', 'C03p42990' => 'bna', 'C03p67310' => 'bna', 'C04p56990' => 'bna', 'C04p58660' => 'bna', 'C05p09890' => 'bna', 'C05p59680' => 'bna', 'C06p19830' => 'bna', 'C06p53040' => 'bna', 'C07p15230' => 'bna', 'C08p50070' => 'bna', 'C08p50090' => 'bna', 'C09p38330' => 'bna', 'C09p53940' => 'bna', 'CAN.G1014.1' => 'can', 'CAN.G644.30' => 'can', 'CAN.G84.47' => 'can', 'CAN.G919.8' => 'can', 'CANSAT54G0113' => 'cansat', 'CANSAT54G1286' => 'cansat', 'CANSAT64G1020' => 'cansat', 'CARHR008080' => 'chi', 'CARHR008090' => 'chi', 'CARHR012130' => 'chi', 'CARHR038390' => 'chi', 'CARHR082330' => 'chi', 'CARHR120520' => 'chi', 'CARHR151470' => 'chi', 'CARHR190950' => 'chi', 'Carub.0001s0760' => 'cru', 'Carub.0001s1146' => 'cru', 'Carub.0003s0721' => 'cru', 'Carub.0004s0858' => 'cru', 'Carub.0005s1040' => 'cru', 'Carub.0006s2035' => 'cru', 'Carub.0015s0005' => 'cru', 'Ca_01607_v3' => 'car', 'Ca_01677_v3' => 'car', 'Ca_06087_v3' => 'car', 'Ca_19238_v3' => 'car', 'Ca_19373_v3' => 'car', 'Ca_21079_v3' => 'car', 'CBR_g54016' => 'cbr', 'CBR_g54018' => 'cbr', 'CBR_g54020' => 'cbr', 'Cc01_g09780' => 'ccan', 'Cc01_g11680' => 'ccan', 'Cc02_g15610' => 'ccan', 'Cc05_g04350' => 'ccan', 'Cc09_g01580' => 'ccan', 'CDE01G0795' => 'cde', 'CDE02G2024' => 'cde', 'CDE02G2260' => 'cde', 'CDE02G4561' => 'cde', 'CDE05G2733' => 'cde', 'CDE05G3422' => 'cde', 'CDE06G2003' => 'cde', 'CDE08G0576' => 'cde', 'CDE09G0048' => 'cde', 'CDE11G0805' => 'cde', 'Cfa003644' => 'cfa', 'Cfa006290' => 'cfa', 'Cfa010080' => 'cfa', 'Cfa011376' => 'cfa', 'Cfa011576' => 'cfa', 'Cfa011577' => 'cfa', 'Cfa014389' => 'cfa', 'Ciclev10006044m.g' => 'ccl', 'Ciclev10006954m.g' => 'ccl', 'Ciclev10015131m.g' => 'ccl', 'Ciclev10015580m.g' => 'ccl', 'Ciclev10028359m.g' => 'ccl', 'Ciclev10028573m.g' => 'ccl', 'CiPaw.03G159300' => 'cil', 'CiPaw.04G115100' => 'cil', 'CiPaw.09G092800' => 'cil', 'CiPaw.10G071800' => 'cil', 'CiPaw.13G105800' => 'cil', 'CiPaw.13G141000' => 'cil', 'CiPaw.14G103400' => 'cil', 'ClCG01G012700' => 'cla', 'ClCG01G012720' => 'cla', 'ClCG01G021920' => 'cla', 'ClCG02G008870' => 'cla', 'ClCG02G020840' => 'cla', 'ClCG02G021930' => 'cla', 'COL.COLO4_19302' => 'col', 'COL.COLO4_25262' => 'col', 'COL.COLO4_31788' => 'col', 'Cpa.g.c34684' => 'cpa', 'Cpa.g.c36520.1' => 'cpa', 'Cpa.g.c45626' => 'cpa', 'Cpa.g.sc121.17' => 'cpa', 'Cpa.g.sc13.22' => 'cpa', 'Cpa.g.sc87.88' => 'cpa', 'Cre06.g261800' => 'cre', 'CsaV3_1G014500' => 'csa', 'CsaV3_1G014510' => 'csa', 'CsaV3_2G034880' => 'csa', 'CsaV3_6G014760' => 'csa', 'CsaV3_6G021500' => 'csa', 'CsaV3_6G048980' => 'csa', 'CSS0002511' => 'camsi', 'CSS0007556' => 'camsi', 'CSS0008532' => 'camsi', 'CSS0009709' => 'camsi', 'CSS0010486' => 'camsi', 'CSS0016768' => 'camsi', 'CSS0023512' => 'camsi', 'CSS0025341' => 'camsi', 'CSS0027999' => 'camsi', 'CSS0028944' => 'camsi', 'CSS0032292' => 'camsi', 'CSS0032464' => 'camsi', 'CSS0037153' => 'camsi', 'CSS0039256' => 'camsi', 'CSS0048392' => 'camsi', 'CSS0050458' => 'camsi', 'DCAR_004224' => 'dca', 'DCAR_006147' => 'dca', 'DCAR_006465' => 'dca', 'DCAR_008159' => 'dca', 'DCAR_012164' => 'dca', 'DCAR_019764' => 'dca', 'Dinv05418' => 'din', 'Dinv10839' => 'din', 'Dinv12521' => 'din', 'Dinv13900' => 'din', 'Dinv29426' => 'din', 'Duzib150G0263' => 'dzi', 'Duzib168G1178' => 'dzi', 'Duzib168G1924' => 'dzi', 'Duzib170G0299' => 'dzi', 'Duzib170G0813' => 'dzi', 'Duzib235G1128' => 'dzi', 'Duzib248G1060' => 'dzi', 'ECA232G1910' => 'eca', 'ECA233G4621' => 'eca', 'ECA238G1216' => 'eca', 'ECA238G1784' => 'eca', 'ECA248G1242' => 'eca', 'EL10Ac8g20071' => 'bvu', 'EL10Ac9g21086' => 'bvu', 'EL10Ac9g22407' => 'bvu', 'EL10Ac9g22412' => 'bvu', 'Eucgr.A01119' => 'egr', 'Eucgr.E04043' => 'egr', 'Eucgr.J00428' => 'egr', 'Eucgr.J00958' => 'egr', 'FAN11G3091' => 'fan', 'FAN11G3651' => 'fan', 'FAN16G2566' => 'fan', 'FAN21G3155' => 'fan', 'FAN21G3400' => 'fan', 'FAN21G3543' => 'fan', 'FAN25G0234' => 'fan', 'FAN25G1422' => 'fan', 'FAN25G3392' => 'fan', 'FvH4_3g01940' => 'fve', 'FvH4_3g29870' => 'fve', 'FvH4_3g33680' => 'fve', 'Glyma.09G004200' => 'gma', 'Glyma.11G151288' => 'gma', 'Glyma.11G189100' => 'gma', 'Glyma.12G072500' => 'gma', 'Glyma.12G085500' => 'gma', 'Glyma.12G181800' => 'gma', 'Glyma.12G193000' => 'gma', 'Glyma.13G309300' => 'gma', 'Glyma.13G319000' => 'gma', 'Glyma.17G012600' => 'gma', 'Gohir.A06G148600' => 'ghi', 'Gohir.A07G115800' => 'ghi', 'Gohir.A08G003600' => 'ghi', 'Gohir.A09G093300' => 'ghi', 'Gohir.A09G105400' => 'ghi', 'Gohir.A09G105500' => 'ghi', 'Gohir.D06G154600' => 'ghi', 'Gohir.D07G120200' => 'ghi', 'Gohir.D08G013900' => 'ghi', 'Gohir.D09G093100' => 'ghi', 'Gohir.D09G102200' => 'ghi', 'Gohir.D09G102300' => 'ghi', 'Gorai.001G129400' => 'gra', 'Gorai.004G008200' => 'gra', 'Gorai.006G109800' => 'gra', 'Gorai.006G119500' => 'gra', 'Gorai.006G121300' => 'gra', 'Gorai.010G180700' => 'gra', 'GSVIVG01012716001' => 'vvi', 'GSVIVG01025118001' => 'vvi', 'GSVIVG01030439001' => 'vvi', 'GSVIVG01031397001' => 'vvi', 'HanXRQChr01g0004201' => 'han', 'HanXRQChr02g0054941' => 'han', 'HanXRQChr05g0141811' => 'han', 'HanXRQChr07g0197751' => 'han', 'HanXRQChr11g0346691' => 'han', 'HanXRQChr13g0396971' => 'han', 'HanXRQChr14g0432951' => 'han', 'HanXRQChr14g0452001' => 'han', 'HanXRQChr15g0496681' => 'han', 'HanXRQChr17g0557491' => 'han', 'HanXRQChr17g0557501' => 'han', 'Haze_06809' => 'cav', 'Haze_12852' => 'cav', 'Haze_15850' => 'cav', 'Haze_23446' => 'cav', 'Haze_23942' => 'cav', 'Haze_23943' => 'cav', 'Hma1.2p1_0091F.1_g046450' => 'hma', 'Hma1.2p1_0128F.1_g059910' => 'hma', 'Hma1.2p1_0249F.1_g102260' => 'hma', 'Hma1.2p1_0453F.1_g156190' => 'hma', 'Hma1.2p1_0695F.1_g204380' => 'hma', 'Hma1.2p1_0749F.1_g212650' => 'hma', 'Hma1.2p1_2156F.1_g315420' => 'hma', 'Hma1.2p1_2686F.1_g326940' => 'hma', 'HPP92_006428' => 'vpl', 'HPP92_012069' => 'vpl', 'HPP92_014129' => 'vpl', 'HPP92_014133' => 'vpl', 'HPP92_017315' => 'vpl', 'HPP92_026445' => 'vpl', 'HPP92_026446' => 'vpl', 'Hund00774' => 'sun', 'Hund07682' => 'sun', 'Hund21413' => 'sun', 'Hund23462' => 'sun', 'Hund23463' => 'sun', 'Lalb_Chr03g0027911' => 'lal', 'Lalb_Chr13g0304271' => 'lal', 'Lalb_Chr19g0137471' => 'lal', 'Lalb_Chr22g0350651' => 'lal', 'Lalb_Chr24g0395151' => 'lal', 'Lj1A1231T40' => 'lonja', 'Lj1A221T48' => 'lonja', 'Lj1C924T12' => 'lonja', 'Lj2C993G6' => 'lonja', 'Lj3g0005790' => 'lja', 'Lj3g0015432' => 'lja', 'Lj3g0017722' => 'lja', 'Lj3g0018497' => 'lja', 'Lj4g0025071' => 'lja', 'Lsat_1_v5_gn_1_129680' => 'lsa', 'Lsat_1_v5_gn_2_25321' => 'lsa', 'Lsat_1_v5_gn_2_95461' => 'lsa', 'Lsat_1_v5_gn_4_159620' => 'lsa', 'Lsat_1_v5_gn_6_41301' => 'lsa', 'Lsat_1_v5_gn_6_74660' => 'lsa', 'Lsat_1_v5_gn_7_11520' => 'lsa', 'Lsat_1_v5_gn_9_67680' => 'lsa', 'Manes.04G008300' => 'mes', 'Manes.04G008400' => 'mes', 'Manes.04G026500' => 'mes', 'Manes.10G135300' => 'mes', 'Manes.11G157300' => 'mes', 'Manes.12G074000' => 'mes', 'Manes.16G006200' => 'mes', 'Manes.17G026400' => 'mes', 'Mapoly0024s0086' => 'mpo', 'Mapoly0024s0087' => 'mpo', 'Mapoly0071s0057' => 'mpo', 'Mapoly0204s0012' => 'mpo', 'MBI04_g37681_MAGBIO' => 'mbi', 'MBI05_g17779_MAGBIO' => 'mbi', 'MBI12_g31184_MAGBIO' => 'mbi', 'MBI17_g11083_MAGBIO' => 'mbi', 'MBI18_g03883_MAGBIO' => 'mbi', 'MBI18_g28940_MAGBIO' => 'mbi', 'MCO01G690' => 'mco', 'MD03G1109900' => 'mdo', 'MD03G1134800' => 'mdo', 'MD05G1348000' => 'mdo', 'MD10G1322400' => 'mdo', 'MD11G1123300' => 'mdo', 'MD11G1157600' => 'mdo', 'Medtr2g084875' => 'mtr', 'Medtr2g088130' => 'mtr', 'Medtr4g055310' => 'mtr', 'Medtr4g061070' => 'mtr', 'Medtr4g132250' => 'mtr', 'MELO3C004795.2' => 'cme', 'MELO3C004797.2' => 'cme', 'MELO3C007396.2' => 'cme', 'MELO3C019277.2' => 'cme', 'MELO3C021449.2' => 'cme', 'MELO3C025736.2' => 'cme', 'Migut.D02175' => 'egut', 'Migut.H01573' => 'egut', 'Migut.M01327' => 'egut', 'Migut.N02513' => 'egut', 'MSTRG.14638' => 'ama', 'MSTRG.18632' => 'ama', 'MSTRG.7203' => 'ama', 'Nitab4.5_0000533g0140' => 'nta', 'Nitab4.5_0000888g0150' => 'nta', 'Nitab4.5_0001453g0040' => 'nta', 'Nitab4.5_0002827g0090' => 'nta', 'Nitab4.5_0003082g0040' => 'nta', 'Nitab4.5_0007799g0040' => 'nta', 'Nitab4.5_0008983g0010' => 'nta', 'Nitab4.5_0009017g0020' => 'nta', 'Nn1g02132' => 'nnu', 'Nn1g03492' => 'nnu', 'Nn1g03493' => 'nnu', 'Nn1g03494' => 'nnu', 'Nn1g07164' => 'nnu', 'Nn1g07291' => 'nnu', 'Nn2g10655' => 'nnu', 'Nn2g11652' => 'nnu', 'Nn2g14008' => 'nnu', 'Nn3g17476' => 'nnu', 'Nn3g17477' => 'nnu', 'Nn4g22370' => 'nnu', 'Nn4g25255' => 'nnu', 'Nn5g27755' => 'nnu', 'Nn6g34260' => 'nnu', 'Nn6g35041' => 'nnu', 'Oeu005924.1' => 'oeu', 'Oeu008383.1' => 'oeu', 'Oeu014928.1' => 'oeu', 'Oeu019889.1' => 'oeu', 'Oeu022271.1' => 'oeu', 'Oeu025271.1' => 'oeu', 'Oeu036302.1' => 'oeu', 'Oeu044100.1' => 'oeu', 'Os01g0528300' => 'osa', 'Os03g0286200' => 'osa', 'Os04g0406600' => 'osa', 'Os07g0512000' => 'osa', 'Os07g0694600' => 'osa', 'Os08g0411000' => 'osa', 'Os09g0565700' => 'osa', 'Os09g0566050' => 'osa', 'Os10g0523700' => 'osa', 'Peaxi162Scf00002g00514' => 'pax', 'Peaxi162Scf00047g01817' => 'pax', 'Peaxi162Scf00114g00001' => 'pax', 'Peaxi162Scf00147g00613' => 'pax', 'Peaxi162Scf00389g00425' => 'pax', 'PGR042G1139' => 'pgr', 'PGR042G3273' => 'pgr', 'PGR102G2180' => 'pgr', 'PGR119G0234' => 'pgr', 'PGR119G0668' => 'pgr', 'PGSC0003DMG400007122' => 'stu', 'PGSC0003DMG400016478' => 'stu', 'PGSC0003DMG400025374' => 'stu', 'PGSC0003DMG400026536' => 'stu', 'Phvul.003G079600' => 'pvu', 'Phvul.005G115600' => 'pvu', 'Phvul.005G127100' => 'pvu', 'Phvul.006G149500' => 'pvu', 'Phvul.006G149600' => 'pvu', 'Phvul.011G071800' => 'pvu', 'Phvul.011G090400' => 'pvu', 'Potri.004G013400' => 'ptr', 'Potri.004G188100' => 'ptr', 'Potri.008G195500' => 'ptr', 'Potri.009G148800' => 'ptr', 'Potri.011G004700' => 'ptr', 'Pp3c17_22810' => 'ppa', 'Pp3c18_4480' => 'ppa', 'Pp3c19_13030' => 'ppa', 'Pp3c1_33620' => 'ppa', 'Pp3c2_9380' => 'ppa', 'PRCOL_00001023' => 'pco', 'Prupe.3G216300' => 'ppe', 'Prupe.4G019500' => 'ppe', 'Prupe.6G092500' => 'ppe', 'Prupe.6G119200' => 'ppe', 'Psat0s1945g0080' => 'psa', 'Psat0s4167g0040' => 'psa', 'Psat1g185800' => 'psa', 'Psat4g006440' => 'psa', 'Psat4g006480' => 'psa', 'Psat4g168120' => 'psa', 'Psat5g255680' => 'psa', 'Psat5g261760' => 'psa', 'Psat7g222120' => 'psa', 'PSO063G7252' => 'pso', 'PSO170G4778' => 'pso', 'PSO210G2249' => 'pso', 'PSO339G2411' => 'pso', 'PSO339G2457' => 'pso', 'PSO339G2854' => 'pso', 'PSO339G4288' => 'pso', 'PSO339G4615' => 'pso', 'PSO384G2796' => 'pso', 'PSO384G2940' => 'pso', 'PSO384G4227' => 'pso', 'PSO478G1425' => 'pso', 'PSO541G3863' => 'pso', 'PSO675G0507' => 'pso', 'PSO782G0338' => 'pso', 'PSO832G0644' => 'pso', 'QL01p013664' => 'qlo', 'QL01p036598' => 'qlo', 'QL05p072984' => 'qlo', 'QL08p005768' => 'qlo', 'QL08p032743' => 'qlo', 'QL93p0073_0439' => 'qlo', 'QL93p0073_0444' => 'qlo', 'RcHm_v2.0_Chr5g0002851' => 'rch', 'RcHm_v2.0_Chr5g0055201' => 'rch', 'RcHm_v2.0_Chr5g0061191' => 'rch', 'RcHm_v2.0_Chr7g0203231' => 'rch', 'Rhsim01G0208100' => 'rsi', 'Rhsim01G0208200' => 'rsi', 'Rhsim02G0106500' => 'rsi', 'Rhsim03G0107900' => 'rsi', 'Rhsim06G0163400' => 'rsi', 'Rhsim13G0105200' => 'rsi', 'Sabra04G0006300' => 'sbr', 'Sabra04G0127000' => 'sbr', 'Sabra08G0148700' => 'sbr', 'Sabra09G0117400' => 'sbr', 'SalBow1G3326' => 'sbo', 'SalBow3G3228' => 'sbo', 'SalBow6G1634' => 'sbo', 'SalBow6G3603' => 'sbo', 'SalBow6G5266' => 'sbo', 'SalBow7G2265' => 'sbo', 'SalBow8G0850' => 'sbo', 'SalBow8G2592' => 'sbo', 'Sc05g0009240' => 'sci', 'Sc12g0002300' => 'sci', 'Sc21g0000100' => 'sci', 'Sc21g0004720' => 'sci', 'Sed0002949' => 'sed', 'Sed0004114' => 'sed', 'Sed0004306' => 'sed', 'Sed0006172' => 'sed', 'Sed0008413' => 'sed', 'Sed0013809' => 'sed', 'Sed0019556' => 'sed', 'SEGI_03570' => 'sgi', 'SEGI_07859' => 'sgi', 'SEGI_15042' => 'sgi', 'SEGI_16263' => 'sgi', 'SEGI_16552' => 'sgi', 'SEGI_24331' => 'sgi', 'SEGI_27316' => 'sgi', 'SEGI_29521' => 'sgi', 'SEGI_41342' => 'sgi', 'SGA_v2.0_scaffold27G11617' => 'sas', 'SGA_v2.0_scaffold316G48428' => 'sas', 'SGA_v2.0_scaffold49G18261' => 'sas', 'SGA_v2.0_scaffold7G03831' => 'sas', 'SGA_v2.0_scaffold93G28359' => 'sas', 'SHI02210' => 'shi', 'SHI06028' => 'shi', 'SHI06321' => 'shi', 'SMO111G0012' => 'smo', 'SMO228G0080' => 'smo', 'SMO356G0756' => 'smo', 'Solyc02g080620.3' => 'sly', 'Solyc06g074530.1' => 'sly', 'Solyc11g066890.1' => 'sly', 'Solyc11g072520.3' => 'sly', 'Sopen02g025330' => 'spe', 'Sopen06g031000' => 'spe', 'Sopen09g008240' => 'spe', 'Sopen09g025210' => 'spe', 'Sopen11g026600' => 'spe', 'Sopen11g030170' => 'spe', 'Sp1g10420' => 'spa', 'Sp3g06570' => 'spa', 'Sp4g10660' => 'spa', 'Sp5g16460' => 'spa', 'Sp6g22710' => 'spa', 'TAR365G0112' => 'tar', 'TAR369G0717' => 'tar', 'TAR374G0976' => 'tar', 'TAR623G1128' => 'tar', 'TAR626G1937' => 'tar', 'TAR627G0123' => 'tar', 'TAR628G0305' => 'tar', 'TAR636G1176' => 'tar', 'TAR636G2442' => 'tar', 'THA.LOC104800556' => 'tha', 'THA.LOC104809501' => 'tha', 'THA.LOC104815126' => 'tha', 'THA.LOC104815732' => 'tha', 'THA.LOC104823528' => 'tha', 'Thecc.02G365600' => 'tca', 'Thecc.06G222300' => 'tca', 'Thecc.09G261800' => 'tca', 'Thecc.09G291400' => 'tca', 'Thhalv10003028m.g' => 'esa', 'Thhalv10007886m.g' => 'esa', 'Thhalv10016085m.g' => 'esa', 'Thhalv10016681m.g' => 'esa', 'Thhalv10020951m.g' => 'esa', 'TPR.G15598' => 'tpr', 'TPR.G29305' => 'tpr', 'TPR.G32395' => 'tpr', 'TPR.G36998' => 'tpr', 'TPR.G4227' => 'tpr', 'TWI18G1433' => 'twi', 'TWI31G0755' => 'twi', 'TWI38G0912' => 'twi', 'TWI75G1097' => 'twi', 'TWI75G1619' => 'twi', 'TWI79G1336' => 'twi', 'unitig_0.g943' => 'ugi', 'unitig_0.g944' => 'ugi', 'unitig_22.g6646' => 'ugi', 'unitig_37.g12681' => 'ugi', 'unitig_8.g3290' => 'ugi', 'vmacro03278' => 'vma', 'vmacro12197' => 'vma', 'vmacro14478' => 'vma', 'vmacro15787' => 'vma', 'vmacro15789' => 'vma', 'vmacro15790' => 'vma', 'vmacro15806' => 'vma', 'vmacro22907' => 'vma', 'vmacro22908' => 'vma', 'vmacro22909' => 'vma', 'vmacro23108' => 'vma', 'VMungo0540G0540' => 'vmu', 'VMungo0540G2468' => 'vmu', 'VMungo1080G0390' => 'vmu', 'VMungo1080G1165' => 'vmu', 'VMungo1127G0170' => 'vmu', 'VMungo1127G2099' => 'vmu', 'VMungo1215G3013' => 'vmu', 'Zm00001eb013110' => 'zma', 'Zm00001eb084260' => 'zma', 'Zm00001eb096110' => 'zma', 'Zm00001eb217510' => 'zma', 'Zm00001eb322550' => 'zma', 'Zm00001eb390770' => 'zma', 'Zm00001eb397170' => 'zma', 'Zm00001eb404610' => 'zma', 'Zm00001eb421790' => 'zma' ) $gf_id = 'HOM05D000911' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000911' ) $data_identifier = 'HOM05D000911' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 16, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 5, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 6, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 8, 'nnu' => (int) 16, 'oeu' => (int) 8, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 5, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 16, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421790' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000911', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27780' => 'bna', 'A03p35380' => 'bna', 'A04p21160' => 'bna', 'A05p40570' => 'bna', 'A06p26900' => 'bna', 'A08p33230' => 'bna', 'A09p65960' => 'bna', 'A10p18290' => 'bna', 'Aa31LG1G12990' => 'aar', 'Aa31LG1G2980' => 'aar', 'Aa31LG4G14320' => 'aar', 'Aa31LG7G11800' => 'aar', 'Aa31sc36G50' => 'aar', 'Aa31sc36G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3721' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5459' => 'aag', 'Actinidia03028' => 'ach', 'Actinidia03753' => 'ach', 'Actinidia04187' => 'ach', 'Actinidia05509' => 'ach', 'Actinidia24180' => 'ach', 'Actinidia26906' => 'ach', 'Actinidia37097' => 'ach', 'Actinidia38249' => 'ach', 'Ah.01g003470' => 'amhyb', 'Ah.01g004580' => 'amhyb', 'Ah.01g014850' => 'amhyb', 'Ah.01g016830' => 'amhyb', 'Ah.14g088000' => 'amhyb', 'AL1G22980' => 'aly', 'AL3G18990' => 'aly', 'AL4G22440' => 'aly', 'AL4G33180' => 'aly', 'AL5G22920' => 'aly', 'AL6G33660' => 'aly', 'AL8G20720' => 'aly', 'Aqoxy1G00935' => 'aox', 'Aqoxy1G02094' => 'aox', 'Aqoxy2G01239' => 'aox', 'Aqoxy4G01870' => 'aox', 'Aqoxy7G00450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.36ZVTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71EM27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5D6C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH3WRE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3NCM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RIM768' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YB5YRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z36GDV' => 'arhy', 'AT1G08250' => 'ath', 'AT1G11790' => 'ath', 'AT2G27820' => 'ath', 'AT3G07630' => 'ath', 'AT3G44720' => 'ath', 'AT5G22630' => 'ath', 'ATR0693G304' => 'atr', 'ATR0794G109' => 'atr', 'ATR0820G120' => 'atr', 'ATR1159G064' => 'atr', 'Atru.chr10.2239' => 'acertr', 'Atru.chr3.3371' => 'acertr', 'Atru.chr6.3202' => 'acertr', 'AUR62006499' => 'cqu', 'AUR62012718' => 'cqu', 'AUR62021938' => 'cqu', 'AUR62023932' => 'cqu', 'AUR62025034' => 'cqu', 'AUR62025035' => 'cqu', 'AUR62038307' => 'cqu', 'AUR62043466' => 'cqu', 'BcaB02g10748' => 'bca', 'BcaB03g13231' => 'bca', 'BcaB03g14689' => 'bca', 'BcaB05g22716' => 'bca', 'BcaB06g28172' => 'bca', 'BcaB08g36413' => 'bca', 'BcaC01g02186' => 'bca', 'BcaC01g04272' => 'bca', 'BcaC02g08080' => 'bca', 'BcaC02g08227' => 'bca', 'BcaC03g13901' => 'bca', 'BcaC04g19593' => 'bca', 'BcaC04g20874' => 'bca', 'BcaC05g29557' => 'bca', 'BcaC06g35505' => 'bca', 'BcaC07g41954' => 'bca', 'BcaC07g41955' => 'bca', 'BcaC07g41956' => 'bca', 'BcaC07g42519' => 'bca', 'BcaC07g42520' => 'bca', 'BcaC07g42523' => 'bca', 'BcaC07g42524' => 'bca', 'BcaC07g42525' => 'bca', 'BcaC08g47480' => 'bca', 'BcaC08g47481' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00530' => 'bna', 'BolC2t07178H' => 'bol', 'BolC3t16567H' => 'bol', 'BolC4t27234H' => 'bol', 'BolC5t29728H' => 'bol', 'BolC5t34622H' => 'bol', 'BolC6t40321H' => 'bol', 'BolC7t42028H' => 'bol', 'BolC8t49125H' => 'bol', 'BolC8t52538H' => 'bol', 'BolC8t52539H' => 'bol', 'BolC9t56681H' => 'bol', 'BolC9t58266H' => 'bol', 'BolSC21t60294H' => 'bol', 'BraA02t05670Z' => 'bra', 'BraA03t12716Z' => 'bra', 'BraA04t17685Z' => 'bra', 'BraA05t22788Z' => 'bra', 'BraA06t24032Z' => 'bra', 'BraA06t25625Z' => 'bra', 'BraA07t27930Z' => 'bra', 'BraA08t35242Z' => 'bra', 'BraA09t38609Z' => 'bra', 'BraA10t43905Z' => 'bra', 'C02p11060' => 'bna', 'C03p42990' => 'bna', 'C03p67310' => 'bna', 'C04p56990' => 'bna', 'C04p58660' => 'bna', 'C05p09890' => 'bna', 'C05p59680' => 'bna', 'C06p19830' => 'bna', 'C06p53040' => 'bna', 'C07p15230' => 'bna', 'C08p50070' => 'bna', 'C08p50090' => 'bna', 'C09p38330' => 'bna', 'C09p53940' => 'bna', 'CAN.G1014.1' => 'can', 'CAN.G644.30' => 'can', 'CAN.G84.47' => 'can', 'CAN.G919.8' => 'can', 'CANSAT54G0113' => 'cansat', 'CANSAT54G1286' => 'cansat', 'CANSAT64G1020' => 'cansat', 'CARHR008080' => 'chi', 'CARHR008090' => 'chi', 'CARHR012130' => 'chi', 'CARHR038390' => 'chi', 'CARHR082330' => 'chi', 'CARHR120520' => 'chi', 'CARHR151470' => 'chi', 'CARHR190950' => 'chi', 'Carub.0001s0760' => 'cru', 'Carub.0001s1146' => 'cru', 'Carub.0003s0721' => 'cru', 'Carub.0004s0858' => 'cru', 'Carub.0005s1040' => 'cru', 'Carub.0006s2035' => 'cru', 'Carub.0015s0005' => 'cru', 'Ca_01607_v3' => 'car', 'Ca_01677_v3' => 'car', 'Ca_06087_v3' => 'car', 'Ca_19238_v3' => 'car', 'Ca_19373_v3' => 'car', 'Ca_21079_v3' => 'car', 'CBR_g54016' => 'cbr', 'CBR_g54018' => 'cbr', 'CBR_g54020' => 'cbr', 'Cc01_g09780' => 'ccan', 'Cc01_g11680' => 'ccan', 'Cc02_g15610' => 'ccan', 'Cc05_g04350' => 'ccan', 'Cc09_g01580' => 'ccan', 'CDE01G0795' => 'cde', 'CDE02G2024' => 'cde', 'CDE02G2260' => 'cde', 'CDE02G4561' => 'cde', 'CDE05G2733' => 'cde', 'CDE05G3422' => 'cde', 'CDE06G2003' => 'cde', 'CDE08G0576' => 'cde', 'CDE09G0048' => 'cde', 'CDE11G0805' => 'cde', 'Cfa003644' => 'cfa', 'Cfa006290' => 'cfa', 'Cfa010080' => 'cfa', 'Cfa011376' => 'cfa', 'Cfa011576' => 'cfa', 'Cfa011577' => 'cfa', 'Cfa014389' => 'cfa', 'Ciclev10006044m.g' => 'ccl', 'Ciclev10006954m.g' => 'ccl', 'Ciclev10015131m.g' => 'ccl', 'Ciclev10015580m.g' => 'ccl', 'Ciclev10028359m.g' => 'ccl', 'Ciclev10028573m.g' => 'ccl', 'CiPaw.03G159300' => 'cil', 'CiPaw.04G115100' => 'cil', 'CiPaw.09G092800' => 'cil', 'CiPaw.10G071800' => 'cil', 'CiPaw.13G105800' => 'cil', 'CiPaw.13G141000' => 'cil', 'CiPaw.14G103400' => 'cil', 'ClCG01G012700' => 'cla', 'ClCG01G012720' => 'cla', 'ClCG01G021920' => 'cla', 'ClCG02G008870' => 'cla', 'ClCG02G020840' => 'cla', 'ClCG02G021930' => 'cla', 'COL.COLO4_19302' => 'col', 'COL.COLO4_25262' => 'col', 'COL.COLO4_31788' => 'col', 'Cpa.g.c34684' => 'cpa', 'Cpa.g.c36520.1' => 'cpa', 'Cpa.g.c45626' => 'cpa', 'Cpa.g.sc121.17' => 'cpa', 'Cpa.g.sc13.22' => 'cpa', 'Cpa.g.sc87.88' => 'cpa', 'Cre06.g261800' => 'cre', 'CsaV3_1G014500' => 'csa', 'CsaV3_1G014510' => 'csa', 'CsaV3_2G034880' => 'csa', 'CsaV3_6G014760' => 'csa', 'CsaV3_6G021500' => 'csa', 'CsaV3_6G048980' => 'csa', 'CSS0002511' => 'camsi', 'CSS0007556' => 'camsi', 'CSS0008532' => 'camsi', 'CSS0009709' => 'camsi', 'CSS0010486' => 'camsi', 'CSS0016768' => 'camsi', 'CSS0023512' => 'camsi', 'CSS0025341' => 'camsi', 'CSS0027999' => 'camsi', 'CSS0028944' => 'camsi', 'CSS0032292' => 'camsi', 'CSS0032464' => 'camsi', 'CSS0037153' => 'camsi', 'CSS0039256' => 'camsi', 'CSS0048392' => 'camsi', 'CSS0050458' => 'camsi', 'DCAR_004224' => 'dca', 'DCAR_006147' => 'dca', 'DCAR_006465' => 'dca', 'DCAR_008159' => 'dca', 'DCAR_012164' => 'dca', 'DCAR_019764' => 'dca', 'Dinv05418' => 'din', 'Dinv10839' => 'din', 'Dinv12521' => 'din', 'Dinv13900' => 'din', 'Dinv29426' => 'din', 'Duzib150G0263' => 'dzi', 'Duzib168G1178' => 'dzi', 'Duzib168G1924' => 'dzi', 'Duzib170G0299' => 'dzi', 'Duzib170G0813' => 'dzi', 'Duzib235G1128' => 'dzi', 'Duzib248G1060' => 'dzi', 'ECA232G1910' => 'eca', 'ECA233G4621' => 'eca', 'ECA238G1216' => 'eca', 'ECA238G1784' => 'eca', 'ECA248G1242' => 'eca', 'EL10Ac8g20071' => 'bvu', 'EL10Ac9g21086' => 'bvu', 'EL10Ac9g22407' => 'bvu', 'EL10Ac9g22412' => 'bvu', 'Eucgr.A01119' => 'egr', 'Eucgr.E04043' => 'egr', 'Eucgr.J00428' => 'egr', 'Eucgr.J00958' => 'egr', 'FAN11G3091' => 'fan', 'FAN11G3651' => 'fan', 'FAN16G2566' => 'fan', 'FAN21G3155' => 'fan', 'FAN21G3400' => 'fan', 'FAN21G3543' => 'fan', 'FAN25G0234' => 'fan', 'FAN25G1422' => 'fan', 'FAN25G3392' => 'fan', 'FvH4_3g01940' => 'fve', 'FvH4_3g29870' => 'fve', 'FvH4_3g33680' => 'fve', 'Glyma.09G004200' => 'gma', 'Glyma.11G151288' => 'gma', 'Glyma.11G189100' => 'gma', 'Glyma.12G072500' => 'gma', 'Glyma.12G085500' => 'gma', 'Glyma.12G181800' => 'gma', 'Glyma.12G193000' => 'gma', 'Glyma.13G309300' => 'gma', 'Glyma.13G319000' => 'gma', 'Glyma.17G012600' => 'gma', 'Gohir.A06G148600' => 'ghi', 'Gohir.A07G115800' => 'ghi', 'Gohir.A08G003600' => 'ghi', 'Gohir.A09G093300' => 'ghi', 'Gohir.A09G105400' => 'ghi', 'Gohir.A09G105500' => 'ghi', 'Gohir.D06G154600' => 'ghi', 'Gohir.D07G120200' => 'ghi', 'Gohir.D08G013900' => 'ghi', 'Gohir.D09G093100' => 'ghi', 'Gohir.D09G102200' => 'ghi', 'Gohir.D09G102300' => 'ghi', 'Gorai.001G129400' => 'gra', 'Gorai.004G008200' => 'gra', 'Gorai.006G109800' => 'gra', 'Gorai.006G119500' => 'gra', 'Gorai.006G121300' => 'gra', 'Gorai.010G180700' => 'gra', 'GSVIVG01012716001' => 'vvi', 'GSVIVG01025118001' => 'vvi', 'GSVIVG01030439001' => 'vvi', 'GSVIVG01031397001' => 'vvi', 'HanXRQChr01g0004201' => 'han', 'HanXRQChr02g0054941' => 'han', 'HanXRQChr05g0141811' => 'han', 'HanXRQChr07g0197751' => 'han', 'HanXRQChr11g0346691' => 'han', 'HanXRQChr13g0396971' => 'han', 'HanXRQChr14g0432951' => 'han', 'HanXRQChr14g0452001' => 'han', 'HanXRQChr15g0496681' => 'han', 'HanXRQChr17g0557491' => 'han', 'HanXRQChr17g0557501' => 'han', 'Haze_06809' => 'cav', 'Haze_12852' => 'cav', 'Haze_15850' => 'cav', 'Haze_23446' => 'cav', 'Haze_23942' => 'cav', 'Haze_23943' => 'cav', 'Hma1.2p1_0091F.1_g046450' => 'hma', 'Hma1.2p1_0128F.1_g059910' => 'hma', 'Hma1.2p1_0249F.1_g102260' => 'hma', 'Hma1.2p1_0453F.1_g156190' => 'hma', 'Hma1.2p1_0695F.1_g204380' => 'hma', 'Hma1.2p1_0749F.1_g212650' => 'hma', 'Hma1.2p1_2156F.1_g315420' => 'hma', 'Hma1.2p1_2686F.1_g326940' => 'hma', 'HPP92_006428' => 'vpl', 'HPP92_012069' => 'vpl', 'HPP92_014129' => 'vpl', 'HPP92_014133' => 'vpl', 'HPP92_017315' => 'vpl', 'HPP92_026445' => 'vpl', 'HPP92_026446' => 'vpl', 'Hund00774' => 'sun', 'Hund07682' => 'sun', 'Hund21413' => 'sun', 'Hund23462' => 'sun', 'Hund23463' => 'sun', 'Lalb_Chr03g0027911' => 'lal', 'Lalb_Chr13g0304271' => 'lal', 'Lalb_Chr19g0137471' => 'lal', 'Lalb_Chr22g0350651' => 'lal', 'Lalb_Chr24g0395151' => 'lal', 'Lj1A1231T40' => 'lonja', 'Lj1A221T48' => 'lonja', 'Lj1C924T12' => 'lonja', 'Lj2C993G6' => 'lonja', 'Lj3g0005790' => 'lja', 'Lj3g0015432' => 'lja', 'Lj3g0017722' => 'lja', 'Lj3g0018497' => 'lja', 'Lj4g0025071' => 'lja', 'Lsat_1_v5_gn_1_129680' => 'lsa', 'Lsat_1_v5_gn_2_25321' => 'lsa', 'Lsat_1_v5_gn_2_95461' => 'lsa', 'Lsat_1_v5_gn_4_159620' => 'lsa', 'Lsat_1_v5_gn_6_41301' => 'lsa', 'Lsat_1_v5_gn_6_74660' => 'lsa', 'Lsat_1_v5_gn_7_11520' => 'lsa', 'Lsat_1_v5_gn_9_67680' => 'lsa', 'Manes.04G008300' => 'mes', 'Manes.04G008400' => 'mes', 'Manes.04G026500' => 'mes', 'Manes.10G135300' => 'mes', 'Manes.11G157300' => 'mes', 'Manes.12G074000' => 'mes', 'Manes.16G006200' => 'mes', 'Manes.17G026400' => 'mes', 'Mapoly0024s0086' => 'mpo', 'Mapoly0024s0087' => 'mpo', 'Mapoly0071s0057' => 'mpo', 'Mapoly0204s0012' => 'mpo', 'MBI04_g37681_MAGBIO' => 'mbi', 'MBI05_g17779_MAGBIO' => 'mbi', 'MBI12_g31184_MAGBIO' => 'mbi', 'MBI17_g11083_MAGBIO' => 'mbi', 'MBI18_g03883_MAGBIO' => 'mbi', 'MBI18_g28940_MAGBIO' => 'mbi', 'MCO01G690' => 'mco', 'MD03G1109900' => 'mdo', 'MD03G1134800' => 'mdo', 'MD05G1348000' => 'mdo', 'MD10G1322400' => 'mdo', 'MD11G1123300' => 'mdo', 'MD11G1157600' => 'mdo', 'Medtr2g084875' => 'mtr', 'Medtr2g088130' => 'mtr', 'Medtr4g055310' => 'mtr', 'Medtr4g061070' => 'mtr', 'Medtr4g132250' => 'mtr', 'MELO3C004795.2' => 'cme', 'MELO3C004797.2' => 'cme', 'MELO3C007396.2' => 'cme', 'MELO3C019277.2' => 'cme', 'MELO3C021449.2' => 'cme', 'MELO3C025736.2' => 'cme', 'Migut.D02175' => 'egut', 'Migut.H01573' => 'egut', 'Migut.M01327' => 'egut', 'Migut.N02513' => 'egut', 'MSTRG.14638' => 'ama', 'MSTRG.18632' => 'ama', 'MSTRG.7203' => 'ama', 'Nitab4.5_0000533g0140' => 'nta', 'Nitab4.5_0000888g0150' => 'nta', 'Nitab4.5_0001453g0040' => 'nta', 'Nitab4.5_0002827g0090' => 'nta', 'Nitab4.5_0003082g0040' => 'nta', 'Nitab4.5_0007799g0040' => 'nta', 'Nitab4.5_0008983g0010' => 'nta', 'Nitab4.5_0009017g0020' => 'nta', 'Nn1g02132' => 'nnu', 'Nn1g03492' => 'nnu', 'Nn1g03493' => 'nnu', 'Nn1g03494' => 'nnu', 'Nn1g07164' => 'nnu', 'Nn1g07291' => 'nnu', 'Nn2g10655' => 'nnu', 'Nn2g11652' => 'nnu', 'Nn2g14008' => 'nnu', 'Nn3g17476' => 'nnu', 'Nn3g17477' => 'nnu', 'Nn4g22370' => 'nnu', 'Nn4g25255' => 'nnu', 'Nn5g27755' => 'nnu', 'Nn6g34260' => 'nnu', 'Nn6g35041' => 'nnu', 'Oeu005924.1' => 'oeu', 'Oeu008383.1' => 'oeu', 'Oeu014928.1' => 'oeu', 'Oeu019889.1' => 'oeu', 'Oeu022271.1' => 'oeu', 'Oeu025271.1' => 'oeu', 'Oeu036302.1' => 'oeu', 'Oeu044100.1' => 'oeu', 'Os01g0528300' => 'osa', 'Os03g0286200' => 'osa', 'Os04g0406600' => 'osa', 'Os07g0512000' => 'osa', 'Os07g0694600' => 'osa', 'Os08g0411000' => 'osa', 'Os09g0565700' => 'osa', 'Os09g0566050' => 'osa', 'Os10g0523700' => 'osa', 'Peaxi162Scf00002g00514' => 'pax', 'Peaxi162Scf00047g01817' => 'pax', 'Peaxi162Scf00114g00001' => 'pax', 'Peaxi162Scf00147g00613' => 'pax', 'Peaxi162Scf00389g00425' => 'pax', 'PGR042G1139' => 'pgr', 'PGR042G3273' => 'pgr', 'PGR102G2180' => 'pgr', 'PGR119G0234' => 'pgr', 'PGR119G0668' => 'pgr', 'PGSC0003DMG400007122' => 'stu', 'PGSC0003DMG400016478' => 'stu', 'PGSC0003DMG400025374' => 'stu', 'PGSC0003DMG400026536' => 'stu', 'Phvul.003G079600' => 'pvu', 'Phvul.005G115600' => 'pvu', 'Phvul.005G127100' => 'pvu', 'Phvul.006G149500' => 'pvu', 'Phvul.006G149600' => 'pvu', 'Phvul.011G071800' => 'pvu', 'Phvul.011G090400' => 'pvu', 'Potri.004G013400' => 'ptr', 'Potri.004G188100' => 'ptr', 'Potri.008G195500' => 'ptr', 'Potri.009G148800' => 'ptr', 'Potri.011G004700' => 'ptr', 'Pp3c17_22810' => 'ppa', 'Pp3c18_4480' => 'ppa', 'Pp3c19_13030' => 'ppa', 'Pp3c1_33620' => 'ppa', 'Pp3c2_9380' => 'ppa', 'PRCOL_00001023' => 'pco', 'Prupe.3G216300' => 'ppe', 'Prupe.4G019500' => 'ppe', 'Prupe.6G092500' => 'ppe', 'Prupe.6G119200' => 'ppe', 'Psat0s1945g0080' => 'psa', 'Psat0s4167g0040' => 'psa', 'Psat1g185800' => 'psa', 'Psat4g006440' => 'psa', 'Psat4g006480' => 'psa', 'Psat4g168120' => 'psa', 'Psat5g255680' => 'psa', 'Psat5g261760' => 'psa', 'Psat7g222120' => 'psa', 'PSO063G7252' => 'pso', 'PSO170G4778' => 'pso', 'PSO210G2249' => 'pso', 'PSO339G2411' => 'pso', 'PSO339G2457' => 'pso', 'PSO339G2854' => 'pso', 'PSO339G4288' => 'pso', 'PSO339G4615' => 'pso', 'PSO384G2796' => 'pso', 'PSO384G2940' => 'pso', 'PSO384G4227' => 'pso', 'PSO478G1425' => 'pso', 'PSO541G3863' => 'pso', 'PSO675G0507' => 'pso', 'PSO782G0338' => 'pso', 'PSO832G0644' => 'pso', 'QL01p013664' => 'qlo', 'QL01p036598' => 'qlo', 'QL05p072984' => 'qlo', 'QL08p005768' => 'qlo', 'QL08p032743' => 'qlo', 'QL93p0073_0439' => 'qlo', 'QL93p0073_0444' => 'qlo', 'RcHm_v2.0_Chr5g0002851' => 'rch', 'RcHm_v2.0_Chr5g0055201' => 'rch', 'RcHm_v2.0_Chr5g0061191' => 'rch', 'RcHm_v2.0_Chr7g0203231' => 'rch', 'Rhsim01G0208100' => 'rsi', 'Rhsim01G0208200' => 'rsi', 'Rhsim02G0106500' => 'rsi', 'Rhsim03G0107900' => 'rsi', 'Rhsim06G0163400' => 'rsi', 'Rhsim13G0105200' => 'rsi', 'Sabra04G0006300' => 'sbr', 'Sabra04G0127000' => 'sbr', 'Sabra08G0148700' => 'sbr', 'Sabra09G0117400' => 'sbr', 'SalBow1G3326' => 'sbo', 'SalBow3G3228' => 'sbo', 'SalBow6G1634' => 'sbo', 'SalBow6G3603' => 'sbo', 'SalBow6G5266' => 'sbo', 'SalBow7G2265' => 'sbo', 'SalBow8G0850' => 'sbo', 'SalBow8G2592' => 'sbo', 'Sc05g0009240' => 'sci', 'Sc12g0002300' => 'sci', 'Sc21g0000100' => 'sci', 'Sc21g0004720' => 'sci', 'Sed0002949' => 'sed', 'Sed0004114' => 'sed', 'Sed0004306' => 'sed', 'Sed0006172' => 'sed', 'Sed0008413' => 'sed', 'Sed0013809' => 'sed', 'Sed0019556' => 'sed', 'SEGI_03570' => 'sgi', 'SEGI_07859' => 'sgi', 'SEGI_15042' => 'sgi', 'SEGI_16263' => 'sgi', 'SEGI_16552' => 'sgi', 'SEGI_24331' => 'sgi', 'SEGI_27316' => 'sgi', 'SEGI_29521' => 'sgi', 'SEGI_41342' => 'sgi', 'SGA_v2.0_scaffold27G11617' => 'sas', 'SGA_v2.0_scaffold316G48428' => 'sas', 'SGA_v2.0_scaffold49G18261' => 'sas', 'SGA_v2.0_scaffold7G03831' => 'sas', 'SGA_v2.0_scaffold93G28359' => 'sas', 'SHI02210' => 'shi', 'SHI06028' => 'shi', 'SHI06321' => 'shi', 'SMO111G0012' => 'smo', 'SMO228G0080' => 'smo', 'SMO356G0756' => 'smo', 'Solyc02g080620.3' => 'sly', 'Solyc06g074530.1' => 'sly', 'Solyc11g066890.1' => 'sly', 'Solyc11g072520.3' => 'sly', 'Sopen02g025330' => 'spe', 'Sopen06g031000' => 'spe', 'Sopen09g008240' => 'spe', 'Sopen09g025210' => 'spe', 'Sopen11g026600' => 'spe', 'Sopen11g030170' => 'spe', 'Sp1g10420' => 'spa', 'Sp3g06570' => 'spa', 'Sp4g10660' => 'spa', 'Sp5g16460' => 'spa', 'Sp6g22710' => 'spa', 'TAR365G0112' => 'tar', 'TAR369G0717' => 'tar', 'TAR374G0976' => 'tar', 'TAR623G1128' => 'tar', 'TAR626G1937' => 'tar', 'TAR627G0123' => 'tar', 'TAR628G0305' => 'tar', 'TAR636G1176' => 'tar', 'TAR636G2442' => 'tar', 'THA.LOC104800556' => 'tha', 'THA.LOC104809501' => 'tha', 'THA.LOC104815126' => 'tha', 'THA.LOC104815732' => 'tha', 'THA.LOC104823528' => 'tha', 'Thecc.02G365600' => 'tca', 'Thecc.06G222300' => 'tca', 'Thecc.09G261800' => 'tca', 'Thecc.09G291400' => 'tca', 'Thhalv10003028m.g' => 'esa', 'Thhalv10007886m.g' => 'esa', 'Thhalv10016085m.g' => 'esa', 'Thhalv10016681m.g' => 'esa', 'Thhalv10020951m.g' => 'esa', 'TPR.G15598' => 'tpr', 'TPR.G29305' => 'tpr', 'TPR.G32395' => 'tpr', 'TPR.G36998' => 'tpr', 'TPR.G4227' => 'tpr', 'TWI18G1433' => 'twi', 'TWI31G0755' => 'twi', 'TWI38G0912' => 'twi', 'TWI75G1097' => 'twi', 'TWI75G1619' => 'twi', 'TWI79G1336' => 'twi', 'unitig_0.g943' => 'ugi', 'unitig_0.g944' => 'ugi', 'unitig_22.g6646' => 'ugi', 'unitig_37.g12681' => 'ugi', 'unitig_8.g3290' => 'ugi', 'vmacro03278' => 'vma', 'vmacro12197' => 'vma', 'vmacro14478' => 'vma', 'vmacro15787' => 'vma', 'vmacro15789' => 'vma', 'vmacro15790' => 'vma', 'vmacro15806' => 'vma', 'vmacro22907' => 'vma', 'vmacro22908' => 'vma', 'vmacro22909' => 'vma', 'vmacro23108' => 'vma', 'VMungo0540G0540' => 'vmu', 'VMungo0540G2468' => 'vmu', 'VMungo1080G0390' => 'vmu', 'VMungo1080G1165' => 'vmu', 'VMungo1127G0170' => 'vmu', 'VMungo1127G2099' => 'vmu', 'VMungo1215G3013' => 'vmu', 'Zm00001eb013110' => 'zma', 'Zm00001eb084260' => 'zma', 'Zm00001eb096110' => 'zma', 'Zm00001eb217510' => 'zma', 'Zm00001eb322550' => 'zma', 'Zm00001eb390770' => 'zma', 'Zm00001eb397170' => 'zma', 'Zm00001eb404610' => 'zma', 'Zm00001eb421790' => 'zma' ), 'gf_id' => 'HOM05D000911', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000911' ), 'data_identifier' => 'HOM05D000911', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000911', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27780' => 'bna', 'A03p35380' => 'bna', 'A04p21160' => 'bna', 'A05p40570' => 'bna', 'A06p26900' => 'bna', 'A08p33230' => 'bna', 'A09p65960' => 'bna', 'A10p18290' => 'bna', 'Aa31LG1G12990' => 'aar', 'Aa31LG1G2980' => 'aar', 'Aa31LG4G14320' => 'aar', 'Aa31LG7G11800' => 'aar', 'Aa31sc36G50' => 'aar', 'Aa31sc36G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3721' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5459' => 'aag', 'Actinidia03028' => 'ach', 'Actinidia03753' => 'ach', 'Actinidia04187' => 'ach', 'Actinidia05509' => 'ach', 'Actinidia24180' => 'ach', 'Actinidia26906' => 'ach', 'Actinidia37097' => 'ach', 'Actinidia38249' => 'ach', 'Ah.01g003470' => 'amhyb', 'Ah.01g004580' => 'amhyb', 'Ah.01g014850' => 'amhyb', 'Ah.01g016830' => 'amhyb', 'Ah.14g088000' => 'amhyb', 'AL1G22980' => 'aly', 'AL3G18990' => 'aly', 'AL4G22440' => 'aly', 'AL4G33180' => 'aly', 'AL5G22920' => 'aly', 'AL6G33660' => 'aly', 'AL8G20720' => 'aly', 'Aqoxy1G00935' => 'aox', 'Aqoxy1G02094' => 'aox', 'Aqoxy2G01239' => 'aox', 'Aqoxy4G01870' => 'aox', 'Aqoxy7G00450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.36ZVTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71EM27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5D6C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH3WRE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3NCM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RIM768' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YB5YRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z36GDV' => 'arhy', 'AT1G08250' => 'ath', 'AT1G11790' => 'ath', 'AT2G27820' => 'ath', 'AT3G07630' => 'ath', 'AT3G44720' => 'ath', 'AT5G22630' => 'ath', 'ATR0693G304' => 'atr', 'ATR0794G109' => 'atr', 'ATR0820G120' => 'atr', 'ATR1159G064' => 'atr', 'Atru.chr10.2239' => 'acertr', 'Atru.chr3.3371' => 'acertr', 'Atru.chr6.3202' => 'acertr', 'AUR62006499' => 'cqu', 'AUR62012718' => 'cqu', 'AUR62021938' => 'cqu', 'AUR62023932' => 'cqu', 'AUR62025034' => 'cqu', 'AUR62025035' => 'cqu', 'AUR62038307' => 'cqu', 'AUR62043466' => 'cqu', 'BcaB02g10748' => 'bca', 'BcaB03g13231' => 'bca', 'BcaB03g14689' => 'bca', 'BcaB05g22716' => 'bca', 'BcaB06g28172' => 'bca', 'BcaB08g36413' => 'bca', 'BcaC01g02186' => 'bca', 'BcaC01g04272' => 'bca', 'BcaC02g08080' => 'bca', 'BcaC02g08227' => 'bca', 'BcaC03g13901' => 'bca', 'BcaC04g19593' => 'bca', 'BcaC04g20874' => 'bca', 'BcaC05g29557' => 'bca', 'BcaC06g35505' => 'bca', 'BcaC07g41954' => 'bca', 'BcaC07g41955' => 'bca', 'BcaC07g41956' => 'bca', 'BcaC07g42519' => 'bca', 'BcaC07g42520' => 'bca', 'BcaC07g42523' => 'bca', 'BcaC07g42524' => 'bca', 'BcaC07g42525' => 'bca', 'BcaC08g47480' => 'bca', 'BcaC08g47481' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00530' => 'bna', 'BolC2t07178H' => 'bol', 'BolC3t16567H' => 'bol', 'BolC4t27234H' => 'bol', 'BolC5t29728H' => 'bol', 'BolC5t34622H' => 'bol', 'BolC6t40321H' => 'bol', 'BolC7t42028H' => 'bol', 'BolC8t49125H' => 'bol', 'BolC8t52538H' => 'bol', 'BolC8t52539H' => 'bol', 'BolC9t56681H' => 'bol', 'BolC9t58266H' => 'bol', 'BolSC21t60294H' => 'bol', 'BraA02t05670Z' => 'bra', 'BraA03t12716Z' => 'bra', 'BraA04t17685Z' => 'bra', 'BraA05t22788Z' => 'bra', 'BraA06t24032Z' => 'bra', 'BraA06t25625Z' => 'bra', 'BraA07t27930Z' => 'bra', 'BraA08t35242Z' => 'bra', 'BraA09t38609Z' => 'bra', 'BraA10t43905Z' => 'bra', 'C02p11060' => 'bna', 'C03p42990' => 'bna', 'C03p67310' => 'bna', 'C04p56990' => 'bna', 'C04p58660' => 'bna', 'C05p09890' => 'bna', 'C05p59680' => 'bna', 'C06p19830' => 'bna', 'C06p53040' => 'bna', 'C07p15230' => 'bna', 'C08p50070' => 'bna', 'C08p50090' => 'bna', 'C09p38330' => 'bna', 'C09p53940' => 'bna', 'CAN.G1014.1' => 'can', 'CAN.G644.30' => 'can', 'CAN.G84.47' => 'can', 'CAN.G919.8' => 'can', 'CANSAT54G0113' => 'cansat', 'CANSAT54G1286' => 'cansat', 'CANSAT64G1020' => 'cansat', 'CARHR008080' => 'chi', 'CARHR008090' => 'chi', 'CARHR012130' => 'chi', 'CARHR038390' => 'chi', 'CARHR082330' => 'chi', 'CARHR120520' => 'chi', 'CARHR151470' => 'chi', 'CARHR190950' => 'chi', 'Carub.0001s0760' => 'cru', 'Carub.0001s1146' => 'cru', 'Carub.0003s0721' => 'cru', 'Carub.0004s0858' => 'cru', 'Carub.0005s1040' => 'cru', 'Carub.0006s2035' => 'cru', 'Carub.0015s0005' => 'cru', 'Ca_01607_v3' => 'car', 'Ca_01677_v3' => 'car', 'Ca_06087_v3' => 'car', 'Ca_19238_v3' => 'car', 'Ca_19373_v3' => 'car', 'Ca_21079_v3' => 'car', 'CBR_g54016' => 'cbr', 'CBR_g54018' => 'cbr', 'CBR_g54020' => 'cbr', 'Cc01_g09780' => 'ccan', 'Cc01_g11680' => 'ccan', 'Cc02_g15610' => 'ccan', 'Cc05_g04350' => 'ccan', 'Cc09_g01580' => 'ccan', 'CDE01G0795' => 'cde', 'CDE02G2024' => 'cde', 'CDE02G2260' => 'cde', 'CDE02G4561' => 'cde', 'CDE05G2733' => 'cde', 'CDE05G3422' => 'cde', 'CDE06G2003' => 'cde', 'CDE08G0576' => 'cde', 'CDE09G0048' => 'cde', 'CDE11G0805' => 'cde', 'Cfa003644' => 'cfa', 'Cfa006290' => 'cfa', 'Cfa010080' => 'cfa', 'Cfa011376' => 'cfa', 'Cfa011576' => 'cfa', 'Cfa011577' => 'cfa', 'Cfa014389' => 'cfa', 'Ciclev10006044m.g' => 'ccl', 'Ciclev10006954m.g' => 'ccl', 'Ciclev10015131m.g' => 'ccl', 'Ciclev10015580m.g' => 'ccl', 'Ciclev10028359m.g' => 'ccl', 'Ciclev10028573m.g' => 'ccl', 'CiPaw.03G159300' => 'cil', 'CiPaw.04G115100' => 'cil', 'CiPaw.09G092800' => 'cil', 'CiPaw.10G071800' => 'cil', 'CiPaw.13G105800' => 'cil', 'CiPaw.13G141000' => 'cil', 'CiPaw.14G103400' => 'cil', 'ClCG01G012700' => 'cla', 'ClCG01G012720' => 'cla', 'ClCG01G021920' => 'cla', 'ClCG02G008870' => 'cla', 'ClCG02G020840' => 'cla', 'ClCG02G021930' => 'cla', 'COL.COLO4_19302' => 'col', 'COL.COLO4_25262' => 'col', 'COL.COLO4_31788' => 'col', 'Cpa.g.c34684' => 'cpa', 'Cpa.g.c36520.1' => 'cpa', 'Cpa.g.c45626' => 'cpa', 'Cpa.g.sc121.17' => 'cpa', 'Cpa.g.sc13.22' => 'cpa', 'Cpa.g.sc87.88' => 'cpa', 'Cre06.g261800' => 'cre', 'CsaV3_1G014500' => 'csa', 'CsaV3_1G014510' => 'csa', 'CsaV3_2G034880' => 'csa', 'CsaV3_6G014760' => 'csa', 'CsaV3_6G021500' => 'csa', 'CsaV3_6G048980' => 'csa', 'CSS0002511' => 'camsi', 'CSS0007556' => 'camsi', 'CSS0008532' => 'camsi', 'CSS0009709' => 'camsi', 'CSS0010486' => 'camsi', 'CSS0016768' => 'camsi', 'CSS0023512' => 'camsi', 'CSS0025341' => 'camsi', 'CSS0027999' => 'camsi', 'CSS0028944' => 'camsi', 'CSS0032292' => 'camsi', 'CSS0032464' => 'camsi', 'CSS0037153' => 'camsi', 'CSS0039256' => 'camsi', 'CSS0048392' => 'camsi', 'CSS0050458' => 'camsi', 'DCAR_004224' => 'dca', 'DCAR_006147' => 'dca', 'DCAR_006465' => 'dca', 'DCAR_008159' => 'dca', 'DCAR_012164' => 'dca', 'DCAR_019764' => 'dca', 'Dinv05418' => 'din', 'Dinv10839' => 'din', 'Dinv12521' => 'din', 'Dinv13900' => 'din', 'Dinv29426' => 'din', 'Duzib150G0263' => 'dzi', 'Duzib168G1178' => 'dzi', 'Duzib168G1924' => 'dzi', 'Duzib170G0299' => 'dzi', 'Duzib170G0813' => 'dzi', 'Duzib235G1128' => 'dzi', 'Duzib248G1060' => 'dzi', 'ECA232G1910' => 'eca', 'ECA233G4621' => 'eca', 'ECA238G1216' => 'eca', 'ECA238G1784' => 'eca', 'ECA248G1242' => 'eca', 'EL10Ac8g20071' => 'bvu', 'EL10Ac9g21086' => 'bvu', 'EL10Ac9g22407' => 'bvu', 'EL10Ac9g22412' => 'bvu', 'Eucgr.A01119' => 'egr', 'Eucgr.E04043' => 'egr', 'Eucgr.J00428' => 'egr', 'Eucgr.J00958' => 'egr', 'FAN11G3091' => 'fan', 'FAN11G3651' => 'fan', 'FAN16G2566' => 'fan', 'FAN21G3155' => 'fan', 'FAN21G3400' => 'fan', 'FAN21G3543' => 'fan', 'FAN25G0234' => 'fan', 'FAN25G1422' => 'fan', 'FAN25G3392' => 'fan', 'FvH4_3g01940' => 'fve', 'FvH4_3g29870' => 'fve', 'FvH4_3g33680' => 'fve', 'Glyma.09G004200' => 'gma', 'Glyma.11G151288' => 'gma', 'Glyma.11G189100' => 'gma', 'Glyma.12G072500' => 'gma', 'Glyma.12G085500' => 'gma', 'Glyma.12G181800' => 'gma', 'Glyma.12G193000' => 'gma', 'Glyma.13G309300' => 'gma', 'Glyma.13G319000' => 'gma', 'Glyma.17G012600' => 'gma', 'Gohir.A06G148600' => 'ghi', 'Gohir.A07G115800' => 'ghi', 'Gohir.A08G003600' => 'ghi', 'Gohir.A09G093300' => 'ghi', 'Gohir.A09G105400' => 'ghi', 'Gohir.A09G105500' => 'ghi', 'Gohir.D06G154600' => 'ghi', 'Gohir.D07G120200' => 'ghi', 'Gohir.D08G013900' => 'ghi', 'Gohir.D09G093100' => 'ghi', 'Gohir.D09G102200' => 'ghi', 'Gohir.D09G102300' => 'ghi', 'Gorai.001G129400' => 'gra', 'Gorai.004G008200' => 'gra', 'Gorai.006G109800' => 'gra', 'Gorai.006G119500' => 'gra', 'Gorai.006G121300' => 'gra', 'Gorai.010G180700' => 'gra', 'GSVIVG01012716001' => 'vvi', 'GSVIVG01025118001' => 'vvi', 'GSVIVG01030439001' => 'vvi', 'GSVIVG01031397001' => 'vvi', 'HanXRQChr01g0004201' => 'han', 'HanXRQChr02g0054941' => 'han', 'HanXRQChr05g0141811' => 'han', 'HanXRQChr07g0197751' => 'han', 'HanXRQChr11g0346691' => 'han', 'HanXRQChr13g0396971' => 'han', 'HanXRQChr14g0432951' => 'han', 'HanXRQChr14g0452001' => 'han', 'HanXRQChr15g0496681' => 'han', 'HanXRQChr17g0557491' => 'han', 'HanXRQChr17g0557501' => 'han', 'Haze_06809' => 'cav', 'Haze_12852' => 'cav', 'Haze_15850' => 'cav', 'Haze_23446' => 'cav', 'Haze_23942' => 'cav', 'Haze_23943' => 'cav', 'Hma1.2p1_0091F.1_g046450' => 'hma', 'Hma1.2p1_0128F.1_g059910' => 'hma', 'Hma1.2p1_0249F.1_g102260' => 'hma', 'Hma1.2p1_0453F.1_g156190' => 'hma', 'Hma1.2p1_0695F.1_g204380' => 'hma', 'Hma1.2p1_0749F.1_g212650' => 'hma', 'Hma1.2p1_2156F.1_g315420' => 'hma', 'Hma1.2p1_2686F.1_g326940' => 'hma', 'HPP92_006428' => 'vpl', 'HPP92_012069' => 'vpl', 'HPP92_014129' => 'vpl', 'HPP92_014133' => 'vpl', 'HPP92_017315' => 'vpl', 'HPP92_026445' => 'vpl', 'HPP92_026446' => 'vpl', 'Hund00774' => 'sun', 'Hund07682' => 'sun', 'Hund21413' => 'sun', 'Hund23462' => 'sun', 'Hund23463' => 'sun', 'Lalb_Chr03g0027911' => 'lal', 'Lalb_Chr13g0304271' => 'lal', 'Lalb_Chr19g0137471' => 'lal', 'Lalb_Chr22g0350651' => 'lal', 'Lalb_Chr24g0395151' => 'lal', 'Lj1A1231T40' => 'lonja', 'Lj1A221T48' => 'lonja', 'Lj1C924T12' => 'lonja', 'Lj2C993G6' => 'lonja', 'Lj3g0005790' => 'lja', 'Lj3g0015432' => 'lja', 'Lj3g0017722' => 'lja', 'Lj3g0018497' => 'lja', 'Lj4g0025071' => 'lja', 'Lsat_1_v5_gn_1_129680' => 'lsa', 'Lsat_1_v5_gn_2_25321' => 'lsa', 'Lsat_1_v5_gn_2_95461' => 'lsa', 'Lsat_1_v5_gn_4_159620' => 'lsa', 'Lsat_1_v5_gn_6_41301' => 'lsa', 'Lsat_1_v5_gn_6_74660' => 'lsa', 'Lsat_1_v5_gn_7_11520' => 'lsa', 'Lsat_1_v5_gn_9_67680' => 'lsa', 'Manes.04G008300' => 'mes', 'Manes.04G008400' => 'mes', 'Manes.04G026500' => 'mes', 'Manes.10G135300' => 'mes', 'Manes.11G157300' => 'mes', 'Manes.12G074000' => 'mes', 'Manes.16G006200' => 'mes', 'Manes.17G026400' => 'mes', 'Mapoly0024s0086' => 'mpo', 'Mapoly0024s0087' => 'mpo', 'Mapoly0071s0057' => 'mpo', 'Mapoly0204s0012' => 'mpo', 'MBI04_g37681_MAGBIO' => 'mbi', 'MBI05_g17779_MAGBIO' => 'mbi', 'MBI12_g31184_MAGBIO' => 'mbi', 'MBI17_g11083_MAGBIO' => 'mbi', 'MBI18_g03883_MAGBIO' => 'mbi', 'MBI18_g28940_MAGBIO' => 'mbi', 'MCO01G690' => 'mco', 'MD03G1109900' => 'mdo', 'MD03G1134800' => 'mdo', 'MD05G1348000' => 'mdo', 'MD10G1322400' => 'mdo', 'MD11G1123300' => 'mdo', 'MD11G1157600' => 'mdo', 'Medtr2g084875' => 'mtr', 'Medtr2g088130' => 'mtr', 'Medtr4g055310' => 'mtr', 'Medtr4g061070' => 'mtr', 'Medtr4g132250' => 'mtr', 'MELO3C004795.2' => 'cme', 'MELO3C004797.2' => 'cme', 'MELO3C007396.2' => 'cme', 'MELO3C019277.2' => 'cme', 'MELO3C021449.2' => 'cme', 'MELO3C025736.2' => 'cme', 'Migut.D02175' => 'egut', 'Migut.H01573' => 'egut', 'Migut.M01327' => 'egut', 'Migut.N02513' => 'egut', 'MSTRG.14638' => 'ama', 'MSTRG.18632' => 'ama', 'MSTRG.7203' => 'ama', 'Nitab4.5_0000533g0140' => 'nta', 'Nitab4.5_0000888g0150' => 'nta', 'Nitab4.5_0001453g0040' => 'nta', 'Nitab4.5_0002827g0090' => 'nta', 'Nitab4.5_0003082g0040' => 'nta', 'Nitab4.5_0007799g0040' => 'nta', 'Nitab4.5_0008983g0010' => 'nta', 'Nitab4.5_0009017g0020' => 'nta', 'Nn1g02132' => 'nnu', 'Nn1g03492' => 'nnu', 'Nn1g03493' => 'nnu', 'Nn1g03494' => 'nnu', 'Nn1g07164' => 'nnu', 'Nn1g07291' => 'nnu', 'Nn2g10655' => 'nnu', 'Nn2g11652' => 'nnu', 'Nn2g14008' => 'nnu', 'Nn3g17476' => 'nnu', 'Nn3g17477' => 'nnu', 'Nn4g22370' => 'nnu', 'Nn4g25255' => 'nnu', 'Nn5g27755' => 'nnu', 'Nn6g34260' => 'nnu', 'Nn6g35041' => 'nnu', 'Oeu005924.1' => 'oeu', 'Oeu008383.1' => 'oeu', 'Oeu014928.1' => 'oeu', 'Oeu019889.1' => 'oeu', 'Oeu022271.1' => 'oeu', 'Oeu025271.1' => 'oeu', 'Oeu036302.1' => 'oeu', 'Oeu044100.1' => 'oeu', 'Os01g0528300' => 'osa', 'Os03g0286200' => 'osa', 'Os04g0406600' => 'osa', 'Os07g0512000' => 'osa', 'Os07g0694600' => 'osa', 'Os08g0411000' => 'osa', 'Os09g0565700' => 'osa', 'Os09g0566050' => 'osa', 'Os10g0523700' => 'osa', 'Peaxi162Scf00002g00514' => 'pax', 'Peaxi162Scf00047g01817' => 'pax', 'Peaxi162Scf00114g00001' => 'pax', 'Peaxi162Scf00147g00613' => 'pax', 'Peaxi162Scf00389g00425' => 'pax', 'PGR042G1139' => 'pgr', 'PGR042G3273' => 'pgr', 'PGR102G2180' => 'pgr', 'PGR119G0234' => 'pgr', 'PGR119G0668' => 'pgr', 'PGSC0003DMG400007122' => 'stu', 'PGSC0003DMG400016478' => 'stu', 'PGSC0003DMG400025374' => 'stu', 'PGSC0003DMG400026536' => 'stu', 'Phvul.003G079600' => 'pvu', 'Phvul.005G115600' => 'pvu', 'Phvul.005G127100' => 'pvu', 'Phvul.006G149500' => 'pvu', 'Phvul.006G149600' => 'pvu', 'Phvul.011G071800' => 'pvu', 'Phvul.011G090400' => 'pvu', 'Potri.004G013400' => 'ptr', 'Potri.004G188100' => 'ptr', 'Potri.008G195500' => 'ptr', 'Potri.009G148800' => 'ptr', 'Potri.011G004700' => 'ptr', 'Pp3c17_22810' => 'ppa', 'Pp3c18_4480' => 'ppa', 'Pp3c19_13030' => 'ppa', 'Pp3c1_33620' => 'ppa', 'Pp3c2_9380' => 'ppa', 'PRCOL_00001023' => 'pco', 'Prupe.3G216300' => 'ppe', 'Prupe.4G019500' => 'ppe', 'Prupe.6G092500' => 'ppe', 'Prupe.6G119200' => 'ppe', 'Psat0s1945g0080' => 'psa', 'Psat0s4167g0040' => 'psa', 'Psat1g185800' => 'psa', 'Psat4g006440' => 'psa', 'Psat4g006480' => 'psa', 'Psat4g168120' => 'psa', 'Psat5g255680' => 'psa', 'Psat5g261760' => 'psa', 'Psat7g222120' => 'psa', 'PSO063G7252' => 'pso', 'PSO170G4778' => 'pso', 'PSO210G2249' => 'pso', 'PSO339G2411' => 'pso', 'PSO339G2457' => 'pso', 'PSO339G2854' => 'pso', 'PSO339G4288' => 'pso', 'PSO339G4615' => 'pso', 'PSO384G2796' => 'pso', 'PSO384G2940' => 'pso', 'PSO384G4227' => 'pso', 'PSO478G1425' => 'pso', 'PSO541G3863' => 'pso', 'PSO675G0507' => 'pso', 'PSO782G0338' => 'pso', 'PSO832G0644' => 'pso', 'QL01p013664' => 'qlo', 'QL01p036598' => 'qlo', 'QL05p072984' => 'qlo', 'QL08p005768' => 'qlo', 'QL08p032743' => 'qlo', 'QL93p0073_0439' => 'qlo', 'QL93p0073_0444' => 'qlo', 'RcHm_v2.0_Chr5g0002851' => 'rch', 'RcHm_v2.0_Chr5g0055201' => 'rch', 'RcHm_v2.0_Chr5g0061191' => 'rch', 'RcHm_v2.0_Chr7g0203231' => 'rch', 'Rhsim01G0208100' => 'rsi', 'Rhsim01G0208200' => 'rsi', 'Rhsim02G0106500' => 'rsi', 'Rhsim03G0107900' => 'rsi', 'Rhsim06G0163400' => 'rsi', 'Rhsim13G0105200' => 'rsi', 'Sabra04G0006300' => 'sbr', 'Sabra04G0127000' => 'sbr', 'Sabra08G0148700' => 'sbr', 'Sabra09G0117400' => 'sbr', 'SalBow1G3326' => 'sbo', 'SalBow3G3228' => 'sbo', 'SalBow6G1634' => 'sbo', 'SalBow6G3603' => 'sbo', 'SalBow6G5266' => 'sbo', 'SalBow7G2265' => 'sbo', 'SalBow8G0850' => 'sbo', 'SalBow8G2592' => 'sbo', 'Sc05g0009240' => 'sci', 'Sc12g0002300' => 'sci', 'Sc21g0000100' => 'sci', 'Sc21g0004720' => 'sci', 'Sed0002949' => 'sed', 'Sed0004114' => 'sed', 'Sed0004306' => 'sed', 'Sed0006172' => 'sed', 'Sed0008413' => 'sed', 'Sed0013809' => 'sed', 'Sed0019556' => 'sed', 'SEGI_03570' => 'sgi', 'SEGI_07859' => 'sgi', 'SEGI_15042' => 'sgi', 'SEGI_16263' => 'sgi', 'SEGI_16552' => 'sgi', 'SEGI_24331' => 'sgi', 'SEGI_27316' => 'sgi', 'SEGI_29521' => 'sgi', 'SEGI_41342' => 'sgi', 'SGA_v2.0_scaffold27G11617' => 'sas', 'SGA_v2.0_scaffold316G48428' => 'sas', 'SGA_v2.0_scaffold49G18261' => 'sas', 'SGA_v2.0_scaffold7G03831' => 'sas', 'SGA_v2.0_scaffold93G28359' => 'sas', 'SHI02210' => 'shi', 'SHI06028' => 'shi', 'SHI06321' => 'shi', 'SMO111G0012' => 'smo', 'SMO228G0080' => 'smo', 'SMO356G0756' => 'smo', 'Solyc02g080620.3' => 'sly', 'Solyc06g074530.1' => 'sly', 'Solyc11g066890.1' => 'sly', 'Solyc11g072520.3' => 'sly', 'Sopen02g025330' => 'spe', 'Sopen06g031000' => 'spe', 'Sopen09g008240' => 'spe', 'Sopen09g025210' => 'spe', 'Sopen11g026600' => 'spe', 'Sopen11g030170' => 'spe', 'Sp1g10420' => 'spa', 'Sp3g06570' => 'spa', 'Sp4g10660' => 'spa', 'Sp5g16460' => 'spa', 'Sp6g22710' => 'spa', 'TAR365G0112' => 'tar', 'TAR369G0717' => 'tar', 'TAR374G0976' => 'tar', 'TAR623G1128' => 'tar', 'TAR626G1937' => 'tar', 'TAR627G0123' => 'tar', 'TAR628G0305' => 'tar', 'TAR636G1176' => 'tar', 'TAR636G2442' => 'tar', 'THA.LOC104800556' => 'tha', 'THA.LOC104809501' => 'tha', 'THA.LOC104815126' => 'tha', 'THA.LOC104815732' => 'tha', 'THA.LOC104823528' => 'tha', 'Thecc.02G365600' => 'tca', 'Thecc.06G222300' => 'tca', 'Thecc.09G261800' => 'tca', 'Thecc.09G291400' => 'tca', 'Thhalv10003028m.g' => 'esa', 'Thhalv10007886m.g' => 'esa', 'Thhalv10016085m.g' => 'esa', 'Thhalv10016681m.g' => 'esa', 'Thhalv10020951m.g' => 'esa', 'TPR.G15598' => 'tpr', 'TPR.G29305' => 'tpr', 'TPR.G32395' => 'tpr', 'TPR.G36998' => 'tpr', 'TPR.G4227' => 'tpr', 'TWI18G1433' => 'twi', 'TWI31G0755' => 'twi', 'TWI38G0912' => 'twi', 'TWI75G1097' => 'twi', 'TWI75G1619' => 'twi', 'TWI79G1336' => 'twi', 'unitig_0.g943' => 'ugi', 'unitig_0.g944' => 'ugi', 'unitig_22.g6646' => 'ugi', 'unitig_37.g12681' => 'ugi', 'unitig_8.g3290' => 'ugi', 'vmacro03278' => 'vma', 'vmacro12197' => 'vma', 'vmacro14478' => 'vma', 'vmacro15787' => 'vma', 'vmacro15789' => 'vma', 'vmacro15790' => 'vma', 'vmacro15806' => 'vma', 'vmacro22907' => 'vma', 'vmacro22908' => 'vma', 'vmacro22909' => 'vma', 'vmacro23108' => 'vma', 'VMungo0540G0540' => 'vmu', 'VMungo0540G2468' => 'vmu', 'VMungo1080G0390' => 'vmu', 'VMungo1080G1165' => 'vmu', 'VMungo1127G0170' => 'vmu', 'VMungo1127G2099' => 'vmu', 'VMungo1215G3013' => 'vmu', 'Zm00001eb013110' => 'zma', 'Zm00001eb084260' => 'zma', 'Zm00001eb096110' => 'zma', 'Zm00001eb217510' => 'zma', 'Zm00001eb322550' => 'zma', 'Zm00001eb390770' => 'zma', 'Zm00001eb397170' => 'zma', 'Zm00001eb404610' => 'zma', 'Zm00001eb421790' => 'zma' ) $gf_id = 'HOM05D000911' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000911' ) $data_identifier = 'HOM05D000911' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 16, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 5, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 6, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 8, 'nnu' => (int) 16, 'oeu' => (int) 8, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 5, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 16, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421790' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000911', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27780' => 'bna', 'A03p35380' => 'bna', 'A04p21160' => 'bna', 'A05p40570' => 'bna', 'A06p26900' => 'bna', 'A08p33230' => 'bna', 'A09p65960' => 'bna', 'A10p18290' => 'bna', 'Aa31LG1G12990' => 'aar', 'Aa31LG1G2980' => 'aar', 'Aa31LG4G14320' => 'aar', 'Aa31LG7G11800' => 'aar', 'Aa31sc36G50' => 'aar', 'Aa31sc36G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3721' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5459' => 'aag', 'Actinidia03028' => 'ach', 'Actinidia03753' => 'ach', 'Actinidia04187' => 'ach', 'Actinidia05509' => 'ach', 'Actinidia24180' => 'ach', 'Actinidia26906' => 'ach', 'Actinidia37097' => 'ach', 'Actinidia38249' => 'ach', 'Ah.01g003470' => 'amhyb', 'Ah.01g004580' => 'amhyb', 'Ah.01g014850' => 'amhyb', 'Ah.01g016830' => 'amhyb', 'Ah.14g088000' => 'amhyb', 'AL1G22980' => 'aly', 'AL3G18990' => 'aly', 'AL4G22440' => 'aly', 'AL4G33180' => 'aly', 'AL5G22920' => 'aly', 'AL6G33660' => 'aly', 'AL8G20720' => 'aly', 'Aqoxy1G00935' => 'aox', 'Aqoxy1G02094' => 'aox', 'Aqoxy2G01239' => 'aox', 'Aqoxy4G01870' => 'aox', 'Aqoxy7G00450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.36ZVTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71EM27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5D6C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH3WRE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3NCM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RIM768' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YB5YRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z36GDV' => 'arhy', 'AT1G08250' => 'ath', 'AT1G11790' => 'ath', 'AT2G27820' => 'ath', 'AT3G07630' => 'ath', 'AT3G44720' => 'ath', 'AT5G22630' => 'ath', 'ATR0693G304' => 'atr', 'ATR0794G109' => 'atr', 'ATR0820G120' => 'atr', 'ATR1159G064' => 'atr', 'Atru.chr10.2239' => 'acertr', 'Atru.chr3.3371' => 'acertr', 'Atru.chr6.3202' => 'acertr', 'AUR62006499' => 'cqu', 'AUR62012718' => 'cqu', 'AUR62021938' => 'cqu', 'AUR62023932' => 'cqu', 'AUR62025034' => 'cqu', 'AUR62025035' => 'cqu', 'AUR62038307' => 'cqu', 'AUR62043466' => 'cqu', 'BcaB02g10748' => 'bca', 'BcaB03g13231' => 'bca', 'BcaB03g14689' => 'bca', 'BcaB05g22716' => 'bca', 'BcaB06g28172' => 'bca', 'BcaB08g36413' => 'bca', 'BcaC01g02186' => 'bca', 'BcaC01g04272' => 'bca', 'BcaC02g08080' => 'bca', 'BcaC02g08227' => 'bca', 'BcaC03g13901' => 'bca', 'BcaC04g19593' => 'bca', 'BcaC04g20874' => 'bca', 'BcaC05g29557' => 'bca', 'BcaC06g35505' => 'bca', 'BcaC07g41954' => 'bca', 'BcaC07g41955' => 'bca', 'BcaC07g41956' => 'bca', 'BcaC07g42519' => 'bca', 'BcaC07g42520' => 'bca', 'BcaC07g42523' => 'bca', 'BcaC07g42524' => 'bca', 'BcaC07g42525' => 'bca', 'BcaC08g47480' => 'bca', 'BcaC08g47481' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00530' => 'bna', 'BolC2t07178H' => 'bol', 'BolC3t16567H' => 'bol', 'BolC4t27234H' => 'bol', 'BolC5t29728H' => 'bol', 'BolC5t34622H' => 'bol', 'BolC6t40321H' => 'bol', 'BolC7t42028H' => 'bol', 'BolC8t49125H' => 'bol', 'BolC8t52538H' => 'bol', 'BolC8t52539H' => 'bol', 'BolC9t56681H' => 'bol', 'BolC9t58266H' => 'bol', 'BolSC21t60294H' => 'bol', 'BraA02t05670Z' => 'bra', 'BraA03t12716Z' => 'bra', 'BraA04t17685Z' => 'bra', 'BraA05t22788Z' => 'bra', 'BraA06t24032Z' => 'bra', 'BraA06t25625Z' => 'bra', 'BraA07t27930Z' => 'bra', 'BraA08t35242Z' => 'bra', 'BraA09t38609Z' => 'bra', 'BraA10t43905Z' => 'bra', 'C02p11060' => 'bna', 'C03p42990' => 'bna', 'C03p67310' => 'bna', 'C04p56990' => 'bna', 'C04p58660' => 'bna', 'C05p09890' => 'bna', 'C05p59680' => 'bna', 'C06p19830' => 'bna', 'C06p53040' => 'bna', 'C07p15230' => 'bna', 'C08p50070' => 'bna', 'C08p50090' => 'bna', 'C09p38330' => 'bna', 'C09p53940' => 'bna', 'CAN.G1014.1' => 'can', 'CAN.G644.30' => 'can', 'CAN.G84.47' => 'can', 'CAN.G919.8' => 'can', 'CANSAT54G0113' => 'cansat', 'CANSAT54G1286' => 'cansat', 'CANSAT64G1020' => 'cansat', 'CARHR008080' => 'chi', 'CARHR008090' => 'chi', 'CARHR012130' => 'chi', 'CARHR038390' => 'chi', 'CARHR082330' => 'chi', 'CARHR120520' => 'chi', 'CARHR151470' => 'chi', 'CARHR190950' => 'chi', 'Carub.0001s0760' => 'cru', 'Carub.0001s1146' => 'cru', 'Carub.0003s0721' => 'cru', 'Carub.0004s0858' => 'cru', 'Carub.0005s1040' => 'cru', 'Carub.0006s2035' => 'cru', 'Carub.0015s0005' => 'cru', 'Ca_01607_v3' => 'car', 'Ca_01677_v3' => 'car', 'Ca_06087_v3' => 'car', 'Ca_19238_v3' => 'car', 'Ca_19373_v3' => 'car', 'Ca_21079_v3' => 'car', 'CBR_g54016' => 'cbr', 'CBR_g54018' => 'cbr', 'CBR_g54020' => 'cbr', 'Cc01_g09780' => 'ccan', 'Cc01_g11680' => 'ccan', 'Cc02_g15610' => 'ccan', 'Cc05_g04350' => 'ccan', 'Cc09_g01580' => 'ccan', 'CDE01G0795' => 'cde', 'CDE02G2024' => 'cde', 'CDE02G2260' => 'cde', 'CDE02G4561' => 'cde', 'CDE05G2733' => 'cde', 'CDE05G3422' => 'cde', 'CDE06G2003' => 'cde', 'CDE08G0576' => 'cde', 'CDE09G0048' => 'cde', 'CDE11G0805' => 'cde', 'Cfa003644' => 'cfa', 'Cfa006290' => 'cfa', 'Cfa010080' => 'cfa', 'Cfa011376' => 'cfa', 'Cfa011576' => 'cfa', 'Cfa011577' => 'cfa', 'Cfa014389' => 'cfa', 'Ciclev10006044m.g' => 'ccl', 'Ciclev10006954m.g' => 'ccl', 'Ciclev10015131m.g' => 'ccl', 'Ciclev10015580m.g' => 'ccl', 'Ciclev10028359m.g' => 'ccl', 'Ciclev10028573m.g' => 'ccl', 'CiPaw.03G159300' => 'cil', 'CiPaw.04G115100' => 'cil', 'CiPaw.09G092800' => 'cil', 'CiPaw.10G071800' => 'cil', 'CiPaw.13G105800' => 'cil', 'CiPaw.13G141000' => 'cil', 'CiPaw.14G103400' => 'cil', 'ClCG01G012700' => 'cla', 'ClCG01G012720' => 'cla', 'ClCG01G021920' => 'cla', 'ClCG02G008870' => 'cla', 'ClCG02G020840' => 'cla', 'ClCG02G021930' => 'cla', 'COL.COLO4_19302' => 'col', 'COL.COLO4_25262' => 'col', 'COL.COLO4_31788' => 'col', 'Cpa.g.c34684' => 'cpa', 'Cpa.g.c36520.1' => 'cpa', 'Cpa.g.c45626' => 'cpa', 'Cpa.g.sc121.17' => 'cpa', 'Cpa.g.sc13.22' => 'cpa', 'Cpa.g.sc87.88' => 'cpa', 'Cre06.g261800' => 'cre', 'CsaV3_1G014500' => 'csa', 'CsaV3_1G014510' => 'csa', 'CsaV3_2G034880' => 'csa', 'CsaV3_6G014760' => 'csa', 'CsaV3_6G021500' => 'csa', 'CsaV3_6G048980' => 'csa', 'CSS0002511' => 'camsi', 'CSS0007556' => 'camsi', 'CSS0008532' => 'camsi', 'CSS0009709' => 'camsi', 'CSS0010486' => 'camsi', 'CSS0016768' => 'camsi', 'CSS0023512' => 'camsi', 'CSS0025341' => 'camsi', 'CSS0027999' => 'camsi', 'CSS0028944' => 'camsi', 'CSS0032292' => 'camsi', 'CSS0032464' => 'camsi', 'CSS0037153' => 'camsi', 'CSS0039256' => 'camsi', 'CSS0048392' => 'camsi', 'CSS0050458' => 'camsi', 'DCAR_004224' => 'dca', 'DCAR_006147' => 'dca', 'DCAR_006465' => 'dca', 'DCAR_008159' => 'dca', 'DCAR_012164' => 'dca', 'DCAR_019764' => 'dca', 'Dinv05418' => 'din', 'Dinv10839' => 'din', 'Dinv12521' => 'din', 'Dinv13900' => 'din', 'Dinv29426' => 'din', 'Duzib150G0263' => 'dzi', 'Duzib168G1178' => 'dzi', 'Duzib168G1924' => 'dzi', 'Duzib170G0299' => 'dzi', 'Duzib170G0813' => 'dzi', 'Duzib235G1128' => 'dzi', 'Duzib248G1060' => 'dzi', 'ECA232G1910' => 'eca', 'ECA233G4621' => 'eca', 'ECA238G1216' => 'eca', 'ECA238G1784' => 'eca', 'ECA248G1242' => 'eca', 'EL10Ac8g20071' => 'bvu', 'EL10Ac9g21086' => 'bvu', 'EL10Ac9g22407' => 'bvu', 'EL10Ac9g22412' => 'bvu', 'Eucgr.A01119' => 'egr', 'Eucgr.E04043' => 'egr', 'Eucgr.J00428' => 'egr', 'Eucgr.J00958' => 'egr', 'FAN11G3091' => 'fan', 'FAN11G3651' => 'fan', 'FAN16G2566' => 'fan', 'FAN21G3155' => 'fan', 'FAN21G3400' => 'fan', 'FAN21G3543' => 'fan', 'FAN25G0234' => 'fan', 'FAN25G1422' => 'fan', 'FAN25G3392' => 'fan', 'FvH4_3g01940' => 'fve', 'FvH4_3g29870' => 'fve', 'FvH4_3g33680' => 'fve', 'Glyma.09G004200' => 'gma', 'Glyma.11G151288' => 'gma', 'Glyma.11G189100' => 'gma', 'Glyma.12G072500' => 'gma', 'Glyma.12G085500' => 'gma', 'Glyma.12G181800' => 'gma', 'Glyma.12G193000' => 'gma', 'Glyma.13G309300' => 'gma', 'Glyma.13G319000' => 'gma', 'Glyma.17G012600' => 'gma', 'Gohir.A06G148600' => 'ghi', 'Gohir.A07G115800' => 'ghi', 'Gohir.A08G003600' => 'ghi', 'Gohir.A09G093300' => 'ghi', 'Gohir.A09G105400' => 'ghi', 'Gohir.A09G105500' => 'ghi', 'Gohir.D06G154600' => 'ghi', 'Gohir.D07G120200' => 'ghi', 'Gohir.D08G013900' => 'ghi', 'Gohir.D09G093100' => 'ghi', 'Gohir.D09G102200' => 'ghi', 'Gohir.D09G102300' => 'ghi', 'Gorai.001G129400' => 'gra', 'Gorai.004G008200' => 'gra', 'Gorai.006G109800' => 'gra', 'Gorai.006G119500' => 'gra', 'Gorai.006G121300' => 'gra', 'Gorai.010G180700' => 'gra', 'GSVIVG01012716001' => 'vvi', 'GSVIVG01025118001' => 'vvi', 'GSVIVG01030439001' => 'vvi', 'GSVIVG01031397001' => 'vvi', 'HanXRQChr01g0004201' => 'han', 'HanXRQChr02g0054941' => 'han', 'HanXRQChr05g0141811' => 'han', 'HanXRQChr07g0197751' => 'han', 'HanXRQChr11g0346691' => 'han', 'HanXRQChr13g0396971' => 'han', 'HanXRQChr14g0432951' => 'han', 'HanXRQChr14g0452001' => 'han', 'HanXRQChr15g0496681' => 'han', 'HanXRQChr17g0557491' => 'han', 'HanXRQChr17g0557501' => 'han', 'Haze_06809' => 'cav', 'Haze_12852' => 'cav', 'Haze_15850' => 'cav', 'Haze_23446' => 'cav', 'Haze_23942' => 'cav', 'Haze_23943' => 'cav', 'Hma1.2p1_0091F.1_g046450' => 'hma', 'Hma1.2p1_0128F.1_g059910' => 'hma', 'Hma1.2p1_0249F.1_g102260' => 'hma', 'Hma1.2p1_0453F.1_g156190' => 'hma', 'Hma1.2p1_0695F.1_g204380' => 'hma', 'Hma1.2p1_0749F.1_g212650' => 'hma', 'Hma1.2p1_2156F.1_g315420' => 'hma', 'Hma1.2p1_2686F.1_g326940' => 'hma', 'HPP92_006428' => 'vpl', 'HPP92_012069' => 'vpl', 'HPP92_014129' => 'vpl', 'HPP92_014133' => 'vpl', 'HPP92_017315' => 'vpl', 'HPP92_026445' => 'vpl', 'HPP92_026446' => 'vpl', 'Hund00774' => 'sun', 'Hund07682' => 'sun', 'Hund21413' => 'sun', 'Hund23462' => 'sun', 'Hund23463' => 'sun', 'Lalb_Chr03g0027911' => 'lal', 'Lalb_Chr13g0304271' => 'lal', 'Lalb_Chr19g0137471' => 'lal', 'Lalb_Chr22g0350651' => 'lal', 'Lalb_Chr24g0395151' => 'lal', 'Lj1A1231T40' => 'lonja', 'Lj1A221T48' => 'lonja', 'Lj1C924T12' => 'lonja', 'Lj2C993G6' => 'lonja', 'Lj3g0005790' => 'lja', 'Lj3g0015432' => 'lja', 'Lj3g0017722' => 'lja', 'Lj3g0018497' => 'lja', 'Lj4g0025071' => 'lja', 'Lsat_1_v5_gn_1_129680' => 'lsa', 'Lsat_1_v5_gn_2_25321' => 'lsa', 'Lsat_1_v5_gn_2_95461' => 'lsa', 'Lsat_1_v5_gn_4_159620' => 'lsa', 'Lsat_1_v5_gn_6_41301' => 'lsa', 'Lsat_1_v5_gn_6_74660' => 'lsa', 'Lsat_1_v5_gn_7_11520' => 'lsa', 'Lsat_1_v5_gn_9_67680' => 'lsa', 'Manes.04G008300' => 'mes', 'Manes.04G008400' => 'mes', 'Manes.04G026500' => 'mes', 'Manes.10G135300' => 'mes', 'Manes.11G157300' => 'mes', 'Manes.12G074000' => 'mes', 'Manes.16G006200' => 'mes', 'Manes.17G026400' => 'mes', 'Mapoly0024s0086' => 'mpo', 'Mapoly0024s0087' => 'mpo', 'Mapoly0071s0057' => 'mpo', 'Mapoly0204s0012' => 'mpo', 'MBI04_g37681_MAGBIO' => 'mbi', 'MBI05_g17779_MAGBIO' => 'mbi', 'MBI12_g31184_MAGBIO' => 'mbi', 'MBI17_g11083_MAGBIO' => 'mbi', 'MBI18_g03883_MAGBIO' => 'mbi', 'MBI18_g28940_MAGBIO' => 'mbi', 'MCO01G690' => 'mco', 'MD03G1109900' => 'mdo', 'MD03G1134800' => 'mdo', 'MD05G1348000' => 'mdo', 'MD10G1322400' => 'mdo', 'MD11G1123300' => 'mdo', 'MD11G1157600' => 'mdo', 'Medtr2g084875' => 'mtr', 'Medtr2g088130' => 'mtr', 'Medtr4g055310' => 'mtr', 'Medtr4g061070' => 'mtr', 'Medtr4g132250' => 'mtr', 'MELO3C004795.2' => 'cme', 'MELO3C004797.2' => 'cme', 'MELO3C007396.2' => 'cme', 'MELO3C019277.2' => 'cme', 'MELO3C021449.2' => 'cme', 'MELO3C025736.2' => 'cme', 'Migut.D02175' => 'egut', 'Migut.H01573' => 'egut', 'Migut.M01327' => 'egut', 'Migut.N02513' => 'egut', 'MSTRG.14638' => 'ama', 'MSTRG.18632' => 'ama', 'MSTRG.7203' => 'ama', 'Nitab4.5_0000533g0140' => 'nta', 'Nitab4.5_0000888g0150' => 'nta', 'Nitab4.5_0001453g0040' => 'nta', 'Nitab4.5_0002827g0090' => 'nta', 'Nitab4.5_0003082g0040' => 'nta', 'Nitab4.5_0007799g0040' => 'nta', 'Nitab4.5_0008983g0010' => 'nta', 'Nitab4.5_0009017g0020' => 'nta', 'Nn1g02132' => 'nnu', 'Nn1g03492' => 'nnu', 'Nn1g03493' => 'nnu', 'Nn1g03494' => 'nnu', 'Nn1g07164' => 'nnu', 'Nn1g07291' => 'nnu', 'Nn2g10655' => 'nnu', 'Nn2g11652' => 'nnu', 'Nn2g14008' => 'nnu', 'Nn3g17476' => 'nnu', 'Nn3g17477' => 'nnu', 'Nn4g22370' => 'nnu', 'Nn4g25255' => 'nnu', 'Nn5g27755' => 'nnu', 'Nn6g34260' => 'nnu', 'Nn6g35041' => 'nnu', 'Oeu005924.1' => 'oeu', 'Oeu008383.1' => 'oeu', 'Oeu014928.1' => 'oeu', 'Oeu019889.1' => 'oeu', 'Oeu022271.1' => 'oeu', 'Oeu025271.1' => 'oeu', 'Oeu036302.1' => 'oeu', 'Oeu044100.1' => 'oeu', 'Os01g0528300' => 'osa', 'Os03g0286200' => 'osa', 'Os04g0406600' => 'osa', 'Os07g0512000' => 'osa', 'Os07g0694600' => 'osa', 'Os08g0411000' => 'osa', 'Os09g0565700' => 'osa', 'Os09g0566050' => 'osa', 'Os10g0523700' => 'osa', 'Peaxi162Scf00002g00514' => 'pax', 'Peaxi162Scf00047g01817' => 'pax', 'Peaxi162Scf00114g00001' => 'pax', 'Peaxi162Scf00147g00613' => 'pax', 'Peaxi162Scf00389g00425' => 'pax', 'PGR042G1139' => 'pgr', 'PGR042G3273' => 'pgr', 'PGR102G2180' => 'pgr', 'PGR119G0234' => 'pgr', 'PGR119G0668' => 'pgr', 'PGSC0003DMG400007122' => 'stu', 'PGSC0003DMG400016478' => 'stu', 'PGSC0003DMG400025374' => 'stu', 'PGSC0003DMG400026536' => 'stu', 'Phvul.003G079600' => 'pvu', 'Phvul.005G115600' => 'pvu', 'Phvul.005G127100' => 'pvu', 'Phvul.006G149500' => 'pvu', 'Phvul.006G149600' => 'pvu', 'Phvul.011G071800' => 'pvu', 'Phvul.011G090400' => 'pvu', 'Potri.004G013400' => 'ptr', 'Potri.004G188100' => 'ptr', 'Potri.008G195500' => 'ptr', 'Potri.009G148800' => 'ptr', 'Potri.011G004700' => 'ptr', 'Pp3c17_22810' => 'ppa', 'Pp3c18_4480' => 'ppa', 'Pp3c19_13030' => 'ppa', 'Pp3c1_33620' => 'ppa', 'Pp3c2_9380' => 'ppa', 'PRCOL_00001023' => 'pco', 'Prupe.3G216300' => 'ppe', 'Prupe.4G019500' => 'ppe', 'Prupe.6G092500' => 'ppe', 'Prupe.6G119200' => 'ppe', 'Psat0s1945g0080' => 'psa', 'Psat0s4167g0040' => 'psa', 'Psat1g185800' => 'psa', 'Psat4g006440' => 'psa', 'Psat4g006480' => 'psa', 'Psat4g168120' => 'psa', 'Psat5g255680' => 'psa', 'Psat5g261760' => 'psa', 'Psat7g222120' => 'psa', 'PSO063G7252' => 'pso', 'PSO170G4778' => 'pso', 'PSO210G2249' => 'pso', 'PSO339G2411' => 'pso', 'PSO339G2457' => 'pso', 'PSO339G2854' => 'pso', 'PSO339G4288' => 'pso', 'PSO339G4615' => 'pso', 'PSO384G2796' => 'pso', 'PSO384G2940' => 'pso', 'PSO384G4227' => 'pso', 'PSO478G1425' => 'pso', 'PSO541G3863' => 'pso', 'PSO675G0507' => 'pso', 'PSO782G0338' => 'pso', 'PSO832G0644' => 'pso', 'QL01p013664' => 'qlo', 'QL01p036598' => 'qlo', 'QL05p072984' => 'qlo', 'QL08p005768' => 'qlo', 'QL08p032743' => 'qlo', 'QL93p0073_0439' => 'qlo', 'QL93p0073_0444' => 'qlo', 'RcHm_v2.0_Chr5g0002851' => 'rch', 'RcHm_v2.0_Chr5g0055201' => 'rch', 'RcHm_v2.0_Chr5g0061191' => 'rch', 'RcHm_v2.0_Chr7g0203231' => 'rch', 'Rhsim01G0208100' => 'rsi', 'Rhsim01G0208200' => 'rsi', 'Rhsim02G0106500' => 'rsi', 'Rhsim03G0107900' => 'rsi', 'Rhsim06G0163400' => 'rsi', 'Rhsim13G0105200' => 'rsi', 'Sabra04G0006300' => 'sbr', 'Sabra04G0127000' => 'sbr', 'Sabra08G0148700' => 'sbr', 'Sabra09G0117400' => 'sbr', 'SalBow1G3326' => 'sbo', 'SalBow3G3228' => 'sbo', 'SalBow6G1634' => 'sbo', 'SalBow6G3603' => 'sbo', 'SalBow6G5266' => 'sbo', 'SalBow7G2265' => 'sbo', 'SalBow8G0850' => 'sbo', 'SalBow8G2592' => 'sbo', 'Sc05g0009240' => 'sci', 'Sc12g0002300' => 'sci', 'Sc21g0000100' => 'sci', 'Sc21g0004720' => 'sci', 'Sed0002949' => 'sed', 'Sed0004114' => 'sed', 'Sed0004306' => 'sed', 'Sed0006172' => 'sed', 'Sed0008413' => 'sed', 'Sed0013809' => 'sed', 'Sed0019556' => 'sed', 'SEGI_03570' => 'sgi', 'SEGI_07859' => 'sgi', 'SEGI_15042' => 'sgi', 'SEGI_16263' => 'sgi', 'SEGI_16552' => 'sgi', 'SEGI_24331' => 'sgi', 'SEGI_27316' => 'sgi', 'SEGI_29521' => 'sgi', 'SEGI_41342' => 'sgi', 'SGA_v2.0_scaffold27G11617' => 'sas', 'SGA_v2.0_scaffold316G48428' => 'sas', 'SGA_v2.0_scaffold49G18261' => 'sas', 'SGA_v2.0_scaffold7G03831' => 'sas', 'SGA_v2.0_scaffold93G28359' => 'sas', 'SHI02210' => 'shi', 'SHI06028' => 'shi', 'SHI06321' => 'shi', 'SMO111G0012' => 'smo', 'SMO228G0080' => 'smo', 'SMO356G0756' => 'smo', 'Solyc02g080620.3' => 'sly', 'Solyc06g074530.1' => 'sly', 'Solyc11g066890.1' => 'sly', 'Solyc11g072520.3' => 'sly', 'Sopen02g025330' => 'spe', 'Sopen06g031000' => 'spe', 'Sopen09g008240' => 'spe', 'Sopen09g025210' => 'spe', 'Sopen11g026600' => 'spe', 'Sopen11g030170' => 'spe', 'Sp1g10420' => 'spa', 'Sp3g06570' => 'spa', 'Sp4g10660' => 'spa', 'Sp5g16460' => 'spa', 'Sp6g22710' => 'spa', 'TAR365G0112' => 'tar', 'TAR369G0717' => 'tar', 'TAR374G0976' => 'tar', 'TAR623G1128' => 'tar', 'TAR626G1937' => 'tar', 'TAR627G0123' => 'tar', 'TAR628G0305' => 'tar', 'TAR636G1176' => 'tar', 'TAR636G2442' => 'tar', 'THA.LOC104800556' => 'tha', 'THA.LOC104809501' => 'tha', 'THA.LOC104815126' => 'tha', 'THA.LOC104815732' => 'tha', 'THA.LOC104823528' => 'tha', 'Thecc.02G365600' => 'tca', 'Thecc.06G222300' => 'tca', 'Thecc.09G261800' => 'tca', 'Thecc.09G291400' => 'tca', 'Thhalv10003028m.g' => 'esa', 'Thhalv10007886m.g' => 'esa', 'Thhalv10016085m.g' => 'esa', 'Thhalv10016681m.g' => 'esa', 'Thhalv10020951m.g' => 'esa', 'TPR.G15598' => 'tpr', 'TPR.G29305' => 'tpr', 'TPR.G32395' => 'tpr', 'TPR.G36998' => 'tpr', 'TPR.G4227' => 'tpr', 'TWI18G1433' => 'twi', 'TWI31G0755' => 'twi', 'TWI38G0912' => 'twi', 'TWI75G1097' => 'twi', 'TWI75G1619' => 'twi', 'TWI79G1336' => 'twi', 'unitig_0.g943' => 'ugi', 'unitig_0.g944' => 'ugi', 'unitig_22.g6646' => 'ugi', 'unitig_37.g12681' => 'ugi', 'unitig_8.g3290' => 'ugi', 'vmacro03278' => 'vma', 'vmacro12197' => 'vma', 'vmacro14478' => 'vma', 'vmacro15787' => 'vma', 'vmacro15789' => 'vma', 'vmacro15790' => 'vma', 'vmacro15806' => 'vma', 'vmacro22907' => 'vma', 'vmacro22908' => 'vma', 'vmacro22909' => 'vma', 'vmacro23108' => 'vma', 'VMungo0540G0540' => 'vmu', 'VMungo0540G2468' => 'vmu', 'VMungo1080G0390' => 'vmu', 'VMungo1080G1165' => 'vmu', 'VMungo1127G0170' => 'vmu', 'VMungo1127G2099' => 'vmu', 'VMungo1215G3013' => 'vmu', 'Zm00001eb013110' => 'zma', 'Zm00001eb084260' => 'zma', 'Zm00001eb096110' => 'zma', 'Zm00001eb217510' => 'zma', 'Zm00001eb322550' => 'zma', 'Zm00001eb390770' => 'zma', 'Zm00001eb397170' => 'zma', 'Zm00001eb404610' => 'zma', 'Zm00001eb421790' => 'zma' ), 'gf_id' => 'HOM05D000911', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000911' ), 'data_identifier' => 'HOM05D000911', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000911', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27780' => 'bna', 'A03p35380' => 'bna', 'A04p21160' => 'bna', 'A05p40570' => 'bna', 'A06p26900' => 'bna', 'A08p33230' => 'bna', 'A09p65960' => 'bna', 'A10p18290' => 'bna', 'Aa31LG1G12990' => 'aar', 'Aa31LG1G2980' => 'aar', 'Aa31LG4G14320' => 'aar', 'Aa31LG7G11800' => 'aar', 'Aa31sc36G50' => 'aar', 'Aa31sc36G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3721' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5459' => 'aag', 'Actinidia03028' => 'ach', 'Actinidia03753' => 'ach', 'Actinidia04187' => 'ach', 'Actinidia05509' => 'ach', 'Actinidia24180' => 'ach', 'Actinidia26906' => 'ach', 'Actinidia37097' => 'ach', 'Actinidia38249' => 'ach', 'Ah.01g003470' => 'amhyb', 'Ah.01g004580' => 'amhyb', 'Ah.01g014850' => 'amhyb', 'Ah.01g016830' => 'amhyb', 'Ah.14g088000' => 'amhyb', 'AL1G22980' => 'aly', 'AL3G18990' => 'aly', 'AL4G22440' => 'aly', 'AL4G33180' => 'aly', 'AL5G22920' => 'aly', 'AL6G33660' => 'aly', 'AL8G20720' => 'aly', 'Aqoxy1G00935' => 'aox', 'Aqoxy1G02094' => 'aox', 'Aqoxy2G01239' => 'aox', 'Aqoxy4G01870' => 'aox', 'Aqoxy7G00450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.36ZVTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71EM27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5D6C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH3WRE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3NCM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RIM768' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YB5YRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z36GDV' => 'arhy', 'AT1G08250' => 'ath', 'AT1G11790' => 'ath', 'AT2G27820' => 'ath', 'AT3G07630' => 'ath', 'AT3G44720' => 'ath', 'AT5G22630' => 'ath', 'ATR0693G304' => 'atr', 'ATR0794G109' => 'atr', 'ATR0820G120' => 'atr', 'ATR1159G064' => 'atr', 'Atru.chr10.2239' => 'acertr', 'Atru.chr3.3371' => 'acertr', 'Atru.chr6.3202' => 'acertr', 'AUR62006499' => 'cqu', 'AUR62012718' => 'cqu', 'AUR62021938' => 'cqu', 'AUR62023932' => 'cqu', 'AUR62025034' => 'cqu', 'AUR62025035' => 'cqu', 'AUR62038307' => 'cqu', 'AUR62043466' => 'cqu', 'BcaB02g10748' => 'bca', 'BcaB03g13231' => 'bca', 'BcaB03g14689' => 'bca', 'BcaB05g22716' => 'bca', 'BcaB06g28172' => 'bca', 'BcaB08g36413' => 'bca', 'BcaC01g02186' => 'bca', 'BcaC01g04272' => 'bca', 'BcaC02g08080' => 'bca', 'BcaC02g08227' => 'bca', 'BcaC03g13901' => 'bca', 'BcaC04g19593' => 'bca', 'BcaC04g20874' => 'bca', 'BcaC05g29557' => 'bca', 'BcaC06g35505' => 'bca', 'BcaC07g41954' => 'bca', 'BcaC07g41955' => 'bca', 'BcaC07g41956' => 'bca', 'BcaC07g42519' => 'bca', 'BcaC07g42520' => 'bca', 'BcaC07g42523' => 'bca', 'BcaC07g42524' => 'bca', 'BcaC07g42525' => 'bca', 'BcaC08g47480' => 'bca', 'BcaC08g47481' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00530' => 'bna', 'BolC2t07178H' => 'bol', 'BolC3t16567H' => 'bol', 'BolC4t27234H' => 'bol', 'BolC5t29728H' => 'bol', 'BolC5t34622H' => 'bol', 'BolC6t40321H' => 'bol', 'BolC7t42028H' => 'bol', 'BolC8t49125H' => 'bol', 'BolC8t52538H' => 'bol', 'BolC8t52539H' => 'bol', 'BolC9t56681H' => 'bol', 'BolC9t58266H' => 'bol', 'BolSC21t60294H' => 'bol', 'BraA02t05670Z' => 'bra', 'BraA03t12716Z' => 'bra', 'BraA04t17685Z' => 'bra', 'BraA05t22788Z' => 'bra', 'BraA06t24032Z' => 'bra', 'BraA06t25625Z' => 'bra', 'BraA07t27930Z' => 'bra', 'BraA08t35242Z' => 'bra', 'BraA09t38609Z' => 'bra', 'BraA10t43905Z' => 'bra', 'C02p11060' => 'bna', 'C03p42990' => 'bna', 'C03p67310' => 'bna', 'C04p56990' => 'bna', 'C04p58660' => 'bna', 'C05p09890' => 'bna', 'C05p59680' => 'bna', 'C06p19830' => 'bna', 'C06p53040' => 'bna', 'C07p15230' => 'bna', 'C08p50070' => 'bna', 'C08p50090' => 'bna', 'C09p38330' => 'bna', 'C09p53940' => 'bna', 'CAN.G1014.1' => 'can', 'CAN.G644.30' => 'can', 'CAN.G84.47' => 'can', 'CAN.G919.8' => 'can', 'CANSAT54G0113' => 'cansat', 'CANSAT54G1286' => 'cansat', 'CANSAT64G1020' => 'cansat', 'CARHR008080' => 'chi', 'CARHR008090' => 'chi', 'CARHR012130' => 'chi', 'CARHR038390' => 'chi', 'CARHR082330' => 'chi', 'CARHR120520' => 'chi', 'CARHR151470' => 'chi', 'CARHR190950' => 'chi', 'Carub.0001s0760' => 'cru', 'Carub.0001s1146' => 'cru', 'Carub.0003s0721' => 'cru', 'Carub.0004s0858' => 'cru', 'Carub.0005s1040' => 'cru', 'Carub.0006s2035' => 'cru', 'Carub.0015s0005' => 'cru', 'Ca_01607_v3' => 'car', 'Ca_01677_v3' => 'car', 'Ca_06087_v3' => 'car', 'Ca_19238_v3' => 'car', 'Ca_19373_v3' => 'car', 'Ca_21079_v3' => 'car', 'CBR_g54016' => 'cbr', 'CBR_g54018' => 'cbr', 'CBR_g54020' => 'cbr', 'Cc01_g09780' => 'ccan', 'Cc01_g11680' => 'ccan', 'Cc02_g15610' => 'ccan', 'Cc05_g04350' => 'ccan', 'Cc09_g01580' => 'ccan', 'CDE01G0795' => 'cde', 'CDE02G2024' => 'cde', 'CDE02G2260' => 'cde', 'CDE02G4561' => 'cde', 'CDE05G2733' => 'cde', 'CDE05G3422' => 'cde', 'CDE06G2003' => 'cde', 'CDE08G0576' => 'cde', 'CDE09G0048' => 'cde', 'CDE11G0805' => 'cde', 'Cfa003644' => 'cfa', 'Cfa006290' => 'cfa', 'Cfa010080' => 'cfa', 'Cfa011376' => 'cfa', 'Cfa011576' => 'cfa', 'Cfa011577' => 'cfa', 'Cfa014389' => 'cfa', 'Ciclev10006044m.g' => 'ccl', 'Ciclev10006954m.g' => 'ccl', 'Ciclev10015131m.g' => 'ccl', 'Ciclev10015580m.g' => 'ccl', 'Ciclev10028359m.g' => 'ccl', 'Ciclev10028573m.g' => 'ccl', 'CiPaw.03G159300' => 'cil', 'CiPaw.04G115100' => 'cil', 'CiPaw.09G092800' => 'cil', 'CiPaw.10G071800' => 'cil', 'CiPaw.13G105800' => 'cil', 'CiPaw.13G141000' => 'cil', 'CiPaw.14G103400' => 'cil', 'ClCG01G012700' => 'cla', 'ClCG01G012720' => 'cla', 'ClCG01G021920' => 'cla', 'ClCG02G008870' => 'cla', 'ClCG02G020840' => 'cla', 'ClCG02G021930' => 'cla', 'COL.COLO4_19302' => 'col', 'COL.COLO4_25262' => 'col', 'COL.COLO4_31788' => 'col', 'Cpa.g.c34684' => 'cpa', 'Cpa.g.c36520.1' => 'cpa', 'Cpa.g.c45626' => 'cpa', 'Cpa.g.sc121.17' => 'cpa', 'Cpa.g.sc13.22' => 'cpa', 'Cpa.g.sc87.88' => 'cpa', 'Cre06.g261800' => 'cre', 'CsaV3_1G014500' => 'csa', 'CsaV3_1G014510' => 'csa', 'CsaV3_2G034880' => 'csa', 'CsaV3_6G014760' => 'csa', 'CsaV3_6G021500' => 'csa', 'CsaV3_6G048980' => 'csa', 'CSS0002511' => 'camsi', 'CSS0007556' => 'camsi', 'CSS0008532' => 'camsi', 'CSS0009709' => 'camsi', 'CSS0010486' => 'camsi', 'CSS0016768' => 'camsi', 'CSS0023512' => 'camsi', 'CSS0025341' => 'camsi', 'CSS0027999' => 'camsi', 'CSS0028944' => 'camsi', 'CSS0032292' => 'camsi', 'CSS0032464' => 'camsi', 'CSS0037153' => 'camsi', 'CSS0039256' => 'camsi', 'CSS0048392' => 'camsi', 'CSS0050458' => 'camsi', 'DCAR_004224' => 'dca', 'DCAR_006147' => 'dca', 'DCAR_006465' => 'dca', 'DCAR_008159' => 'dca', 'DCAR_012164' => 'dca', 'DCAR_019764' => 'dca', 'Dinv05418' => 'din', 'Dinv10839' => 'din', 'Dinv12521' => 'din', 'Dinv13900' => 'din', 'Dinv29426' => 'din', 'Duzib150G0263' => 'dzi', 'Duzib168G1178' => 'dzi', 'Duzib168G1924' => 'dzi', 'Duzib170G0299' => 'dzi', 'Duzib170G0813' => 'dzi', 'Duzib235G1128' => 'dzi', 'Duzib248G1060' => 'dzi', 'ECA232G1910' => 'eca', 'ECA233G4621' => 'eca', 'ECA238G1216' => 'eca', 'ECA238G1784' => 'eca', 'ECA248G1242' => 'eca', 'EL10Ac8g20071' => 'bvu', 'EL10Ac9g21086' => 'bvu', 'EL10Ac9g22407' => 'bvu', 'EL10Ac9g22412' => 'bvu', 'Eucgr.A01119' => 'egr', 'Eucgr.E04043' => 'egr', 'Eucgr.J00428' => 'egr', 'Eucgr.J00958' => 'egr', 'FAN11G3091' => 'fan', 'FAN11G3651' => 'fan', 'FAN16G2566' => 'fan', 'FAN21G3155' => 'fan', 'FAN21G3400' => 'fan', 'FAN21G3543' => 'fan', 'FAN25G0234' => 'fan', 'FAN25G1422' => 'fan', 'FAN25G3392' => 'fan', 'FvH4_3g01940' => 'fve', 'FvH4_3g29870' => 'fve', 'FvH4_3g33680' => 'fve', 'Glyma.09G004200' => 'gma', 'Glyma.11G151288' => 'gma', 'Glyma.11G189100' => 'gma', 'Glyma.12G072500' => 'gma', 'Glyma.12G085500' => 'gma', 'Glyma.12G181800' => 'gma', 'Glyma.12G193000' => 'gma', 'Glyma.13G309300' => 'gma', 'Glyma.13G319000' => 'gma', 'Glyma.17G012600' => 'gma', 'Gohir.A06G148600' => 'ghi', 'Gohir.A07G115800' => 'ghi', 'Gohir.A08G003600' => 'ghi', 'Gohir.A09G093300' => 'ghi', 'Gohir.A09G105400' => 'ghi', 'Gohir.A09G105500' => 'ghi', 'Gohir.D06G154600' => 'ghi', 'Gohir.D07G120200' => 'ghi', 'Gohir.D08G013900' => 'ghi', 'Gohir.D09G093100' => 'ghi', 'Gohir.D09G102200' => 'ghi', 'Gohir.D09G102300' => 'ghi', 'Gorai.001G129400' => 'gra', 'Gorai.004G008200' => 'gra', 'Gorai.006G109800' => 'gra', 'Gorai.006G119500' => 'gra', 'Gorai.006G121300' => 'gra', 'Gorai.010G180700' => 'gra', 'GSVIVG01012716001' => 'vvi', 'GSVIVG01025118001' => 'vvi', 'GSVIVG01030439001' => 'vvi', 'GSVIVG01031397001' => 'vvi', 'HanXRQChr01g0004201' => 'han', 'HanXRQChr02g0054941' => 'han', 'HanXRQChr05g0141811' => 'han', 'HanXRQChr07g0197751' => 'han', 'HanXRQChr11g0346691' => 'han', 'HanXRQChr13g0396971' => 'han', 'HanXRQChr14g0432951' => 'han', 'HanXRQChr14g0452001' => 'han', 'HanXRQChr15g0496681' => 'han', 'HanXRQChr17g0557491' => 'han', 'HanXRQChr17g0557501' => 'han', 'Haze_06809' => 'cav', 'Haze_12852' => 'cav', 'Haze_15850' => 'cav', 'Haze_23446' => 'cav', 'Haze_23942' => 'cav', 'Haze_23943' => 'cav', 'Hma1.2p1_0091F.1_g046450' => 'hma', 'Hma1.2p1_0128F.1_g059910' => 'hma', 'Hma1.2p1_0249F.1_g102260' => 'hma', 'Hma1.2p1_0453F.1_g156190' => 'hma', 'Hma1.2p1_0695F.1_g204380' => 'hma', 'Hma1.2p1_0749F.1_g212650' => 'hma', 'Hma1.2p1_2156F.1_g315420' => 'hma', 'Hma1.2p1_2686F.1_g326940' => 'hma', 'HPP92_006428' => 'vpl', 'HPP92_012069' => 'vpl', 'HPP92_014129' => 'vpl', 'HPP92_014133' => 'vpl', 'HPP92_017315' => 'vpl', 'HPP92_026445' => 'vpl', 'HPP92_026446' => 'vpl', 'Hund00774' => 'sun', 'Hund07682' => 'sun', 'Hund21413' => 'sun', 'Hund23462' => 'sun', 'Hund23463' => 'sun', 'Lalb_Chr03g0027911' => 'lal', 'Lalb_Chr13g0304271' => 'lal', 'Lalb_Chr19g0137471' => 'lal', 'Lalb_Chr22g0350651' => 'lal', 'Lalb_Chr24g0395151' => 'lal', 'Lj1A1231T40' => 'lonja', 'Lj1A221T48' => 'lonja', 'Lj1C924T12' => 'lonja', 'Lj2C993G6' => 'lonja', 'Lj3g0005790' => 'lja', 'Lj3g0015432' => 'lja', 'Lj3g0017722' => 'lja', 'Lj3g0018497' => 'lja', 'Lj4g0025071' => 'lja', 'Lsat_1_v5_gn_1_129680' => 'lsa', 'Lsat_1_v5_gn_2_25321' => 'lsa', 'Lsat_1_v5_gn_2_95461' => 'lsa', 'Lsat_1_v5_gn_4_159620' => 'lsa', 'Lsat_1_v5_gn_6_41301' => 'lsa', 'Lsat_1_v5_gn_6_74660' => 'lsa', 'Lsat_1_v5_gn_7_11520' => 'lsa', 'Lsat_1_v5_gn_9_67680' => 'lsa', 'Manes.04G008300' => 'mes', 'Manes.04G008400' => 'mes', 'Manes.04G026500' => 'mes', 'Manes.10G135300' => 'mes', 'Manes.11G157300' => 'mes', 'Manes.12G074000' => 'mes', 'Manes.16G006200' => 'mes', 'Manes.17G026400' => 'mes', 'Mapoly0024s0086' => 'mpo', 'Mapoly0024s0087' => 'mpo', 'Mapoly0071s0057' => 'mpo', 'Mapoly0204s0012' => 'mpo', 'MBI04_g37681_MAGBIO' => 'mbi', 'MBI05_g17779_MAGBIO' => 'mbi', 'MBI12_g31184_MAGBIO' => 'mbi', 'MBI17_g11083_MAGBIO' => 'mbi', 'MBI18_g03883_MAGBIO' => 'mbi', 'MBI18_g28940_MAGBIO' => 'mbi', 'MCO01G690' => 'mco', 'MD03G1109900' => 'mdo', 'MD03G1134800' => 'mdo', 'MD05G1348000' => 'mdo', 'MD10G1322400' => 'mdo', 'MD11G1123300' => 'mdo', 'MD11G1157600' => 'mdo', 'Medtr2g084875' => 'mtr', 'Medtr2g088130' => 'mtr', 'Medtr4g055310' => 'mtr', 'Medtr4g061070' => 'mtr', 'Medtr4g132250' => 'mtr', 'MELO3C004795.2' => 'cme', 'MELO3C004797.2' => 'cme', 'MELO3C007396.2' => 'cme', 'MELO3C019277.2' => 'cme', 'MELO3C021449.2' => 'cme', 'MELO3C025736.2' => 'cme', 'Migut.D02175' => 'egut', 'Migut.H01573' => 'egut', 'Migut.M01327' => 'egut', 'Migut.N02513' => 'egut', 'MSTRG.14638' => 'ama', 'MSTRG.18632' => 'ama', 'MSTRG.7203' => 'ama', 'Nitab4.5_0000533g0140' => 'nta', 'Nitab4.5_0000888g0150' => 'nta', 'Nitab4.5_0001453g0040' => 'nta', 'Nitab4.5_0002827g0090' => 'nta', 'Nitab4.5_0003082g0040' => 'nta', 'Nitab4.5_0007799g0040' => 'nta', 'Nitab4.5_0008983g0010' => 'nta', 'Nitab4.5_0009017g0020' => 'nta', 'Nn1g02132' => 'nnu', 'Nn1g03492' => 'nnu', 'Nn1g03493' => 'nnu', 'Nn1g03494' => 'nnu', 'Nn1g07164' => 'nnu', 'Nn1g07291' => 'nnu', 'Nn2g10655' => 'nnu', 'Nn2g11652' => 'nnu', 'Nn2g14008' => 'nnu', 'Nn3g17476' => 'nnu', 'Nn3g17477' => 'nnu', 'Nn4g22370' => 'nnu', 'Nn4g25255' => 'nnu', 'Nn5g27755' => 'nnu', 'Nn6g34260' => 'nnu', 'Nn6g35041' => 'nnu', 'Oeu005924.1' => 'oeu', 'Oeu008383.1' => 'oeu', 'Oeu014928.1' => 'oeu', 'Oeu019889.1' => 'oeu', 'Oeu022271.1' => 'oeu', 'Oeu025271.1' => 'oeu', 'Oeu036302.1' => 'oeu', 'Oeu044100.1' => 'oeu', 'Os01g0528300' => 'osa', 'Os03g0286200' => 'osa', 'Os04g0406600' => 'osa', 'Os07g0512000' => 'osa', 'Os07g0694600' => 'osa', 'Os08g0411000' => 'osa', 'Os09g0565700' => 'osa', 'Os09g0566050' => 'osa', 'Os10g0523700' => 'osa', 'Peaxi162Scf00002g00514' => 'pax', 'Peaxi162Scf00047g01817' => 'pax', 'Peaxi162Scf00114g00001' => 'pax', 'Peaxi162Scf00147g00613' => 'pax', 'Peaxi162Scf00389g00425' => 'pax', 'PGR042G1139' => 'pgr', 'PGR042G3273' => 'pgr', 'PGR102G2180' => 'pgr', 'PGR119G0234' => 'pgr', 'PGR119G0668' => 'pgr', 'PGSC0003DMG400007122' => 'stu', 'PGSC0003DMG400016478' => 'stu', 'PGSC0003DMG400025374' => 'stu', 'PGSC0003DMG400026536' => 'stu', 'Phvul.003G079600' => 'pvu', 'Phvul.005G115600' => 'pvu', 'Phvul.005G127100' => 'pvu', 'Phvul.006G149500' => 'pvu', 'Phvul.006G149600' => 'pvu', 'Phvul.011G071800' => 'pvu', 'Phvul.011G090400' => 'pvu', 'Potri.004G013400' => 'ptr', 'Potri.004G188100' => 'ptr', 'Potri.008G195500' => 'ptr', 'Potri.009G148800' => 'ptr', 'Potri.011G004700' => 'ptr', 'Pp3c17_22810' => 'ppa', 'Pp3c18_4480' => 'ppa', 'Pp3c19_13030' => 'ppa', 'Pp3c1_33620' => 'ppa', 'Pp3c2_9380' => 'ppa', 'PRCOL_00001023' => 'pco', 'Prupe.3G216300' => 'ppe', 'Prupe.4G019500' => 'ppe', 'Prupe.6G092500' => 'ppe', 'Prupe.6G119200' => 'ppe', 'Psat0s1945g0080' => 'psa', 'Psat0s4167g0040' => 'psa', 'Psat1g185800' => 'psa', 'Psat4g006440' => 'psa', 'Psat4g006480' => 'psa', 'Psat4g168120' => 'psa', 'Psat5g255680' => 'psa', 'Psat5g261760' => 'psa', 'Psat7g222120' => 'psa', 'PSO063G7252' => 'pso', 'PSO170G4778' => 'pso', 'PSO210G2249' => 'pso', 'PSO339G2411' => 'pso', 'PSO339G2457' => 'pso', 'PSO339G2854' => 'pso', 'PSO339G4288' => 'pso', 'PSO339G4615' => 'pso', 'PSO384G2796' => 'pso', 'PSO384G2940' => 'pso', 'PSO384G4227' => 'pso', 'PSO478G1425' => 'pso', 'PSO541G3863' => 'pso', 'PSO675G0507' => 'pso', 'PSO782G0338' => 'pso', 'PSO832G0644' => 'pso', 'QL01p013664' => 'qlo', 'QL01p036598' => 'qlo', 'QL05p072984' => 'qlo', 'QL08p005768' => 'qlo', 'QL08p032743' => 'qlo', 'QL93p0073_0439' => 'qlo', 'QL93p0073_0444' => 'qlo', 'RcHm_v2.0_Chr5g0002851' => 'rch', 'RcHm_v2.0_Chr5g0055201' => 'rch', 'RcHm_v2.0_Chr5g0061191' => 'rch', 'RcHm_v2.0_Chr7g0203231' => 'rch', 'Rhsim01G0208100' => 'rsi', 'Rhsim01G0208200' => 'rsi', 'Rhsim02G0106500' => 'rsi', 'Rhsim03G0107900' => 'rsi', 'Rhsim06G0163400' => 'rsi', 'Rhsim13G0105200' => 'rsi', 'Sabra04G0006300' => 'sbr', 'Sabra04G0127000' => 'sbr', 'Sabra08G0148700' => 'sbr', 'Sabra09G0117400' => 'sbr', 'SalBow1G3326' => 'sbo', 'SalBow3G3228' => 'sbo', 'SalBow6G1634' => 'sbo', 'SalBow6G3603' => 'sbo', 'SalBow6G5266' => 'sbo', 'SalBow7G2265' => 'sbo', 'SalBow8G0850' => 'sbo', 'SalBow8G2592' => 'sbo', 'Sc05g0009240' => 'sci', 'Sc12g0002300' => 'sci', 'Sc21g0000100' => 'sci', 'Sc21g0004720' => 'sci', 'Sed0002949' => 'sed', 'Sed0004114' => 'sed', 'Sed0004306' => 'sed', 'Sed0006172' => 'sed', 'Sed0008413' => 'sed', 'Sed0013809' => 'sed', 'Sed0019556' => 'sed', 'SEGI_03570' => 'sgi', 'SEGI_07859' => 'sgi', 'SEGI_15042' => 'sgi', 'SEGI_16263' => 'sgi', 'SEGI_16552' => 'sgi', 'SEGI_24331' => 'sgi', 'SEGI_27316' => 'sgi', 'SEGI_29521' => 'sgi', 'SEGI_41342' => 'sgi', 'SGA_v2.0_scaffold27G11617' => 'sas', 'SGA_v2.0_scaffold316G48428' => 'sas', 'SGA_v2.0_scaffold49G18261' => 'sas', 'SGA_v2.0_scaffold7G03831' => 'sas', 'SGA_v2.0_scaffold93G28359' => 'sas', 'SHI02210' => 'shi', 'SHI06028' => 'shi', 'SHI06321' => 'shi', 'SMO111G0012' => 'smo', 'SMO228G0080' => 'smo', 'SMO356G0756' => 'smo', 'Solyc02g080620.3' => 'sly', 'Solyc06g074530.1' => 'sly', 'Solyc11g066890.1' => 'sly', 'Solyc11g072520.3' => 'sly', 'Sopen02g025330' => 'spe', 'Sopen06g031000' => 'spe', 'Sopen09g008240' => 'spe', 'Sopen09g025210' => 'spe', 'Sopen11g026600' => 'spe', 'Sopen11g030170' => 'spe', 'Sp1g10420' => 'spa', 'Sp3g06570' => 'spa', 'Sp4g10660' => 'spa', 'Sp5g16460' => 'spa', 'Sp6g22710' => 'spa', 'TAR365G0112' => 'tar', 'TAR369G0717' => 'tar', 'TAR374G0976' => 'tar', 'TAR623G1128' => 'tar', 'TAR626G1937' => 'tar', 'TAR627G0123' => 'tar', 'TAR628G0305' => 'tar', 'TAR636G1176' => 'tar', 'TAR636G2442' => 'tar', 'THA.LOC104800556' => 'tha', 'THA.LOC104809501' => 'tha', 'THA.LOC104815126' => 'tha', 'THA.LOC104815732' => 'tha', 'THA.LOC104823528' => 'tha', 'Thecc.02G365600' => 'tca', 'Thecc.06G222300' => 'tca', 'Thecc.09G261800' => 'tca', 'Thecc.09G291400' => 'tca', 'Thhalv10003028m.g' => 'esa', 'Thhalv10007886m.g' => 'esa', 'Thhalv10016085m.g' => 'esa', 'Thhalv10016681m.g' => 'esa', 'Thhalv10020951m.g' => 'esa', 'TPR.G15598' => 'tpr', 'TPR.G29305' => 'tpr', 'TPR.G32395' => 'tpr', 'TPR.G36998' => 'tpr', 'TPR.G4227' => 'tpr', 'TWI18G1433' => 'twi', 'TWI31G0755' => 'twi', 'TWI38G0912' => 'twi', 'TWI75G1097' => 'twi', 'TWI75G1619' => 'twi', 'TWI79G1336' => 'twi', 'unitig_0.g943' => 'ugi', 'unitig_0.g944' => 'ugi', 'unitig_22.g6646' => 'ugi', 'unitig_37.g12681' => 'ugi', 'unitig_8.g3290' => 'ugi', 'vmacro03278' => 'vma', 'vmacro12197' => 'vma', 'vmacro14478' => 'vma', 'vmacro15787' => 'vma', 'vmacro15789' => 'vma', 'vmacro15790' => 'vma', 'vmacro15806' => 'vma', 'vmacro22907' => 'vma', 'vmacro22908' => 'vma', 'vmacro22909' => 'vma', 'vmacro23108' => 'vma', 'VMungo0540G0540' => 'vmu', 'VMungo0540G2468' => 'vmu', 'VMungo1080G0390' => 'vmu', 'VMungo1080G1165' => 'vmu', 'VMungo1127G0170' => 'vmu', 'VMungo1127G2099' => 'vmu', 'VMungo1215G3013' => 'vmu', 'Zm00001eb013110' => 'zma', 'Zm00001eb084260' => 'zma', 'Zm00001eb096110' => 'zma', 'Zm00001eb217510' => 'zma', 'Zm00001eb322550' => 'zma', 'Zm00001eb390770' => 'zma', 'Zm00001eb397170' => 'zma', 'Zm00001eb404610' => 'zma', 'Zm00001eb421790' => 'zma' ) $gf_id = 'HOM05D000911' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000911' ) $data_identifier = 'HOM05D000911' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 16, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 5, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 6, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 8, 'nnu' => (int) 16, 'oeu' => (int) 8, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 5, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 16, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421790' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000911', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27780' => 'bna', 'A03p35380' => 'bna', 'A04p21160' => 'bna', 'A05p40570' => 'bna', 'A06p26900' => 'bna', 'A08p33230' => 'bna', 'A09p65960' => 'bna', 'A10p18290' => 'bna', 'Aa31LG1G12990' => 'aar', 'Aa31LG1G2980' => 'aar', 'Aa31LG4G14320' => 'aar', 'Aa31LG7G11800' => 'aar', 'Aa31sc36G50' => 'aar', 'Aa31sc36G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3721' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5459' => 'aag', 'Actinidia03028' => 'ach', 'Actinidia03753' => 'ach', 'Actinidia04187' => 'ach', 'Actinidia05509' => 'ach', 'Actinidia24180' => 'ach', 'Actinidia26906' => 'ach', 'Actinidia37097' => 'ach', 'Actinidia38249' => 'ach', 'Ah.01g003470' => 'amhyb', 'Ah.01g004580' => 'amhyb', 'Ah.01g014850' => 'amhyb', 'Ah.01g016830' => 'amhyb', 'Ah.14g088000' => 'amhyb', 'AL1G22980' => 'aly', 'AL3G18990' => 'aly', 'AL4G22440' => 'aly', 'AL4G33180' => 'aly', 'AL5G22920' => 'aly', 'AL6G33660' => 'aly', 'AL8G20720' => 'aly', 'Aqoxy1G00935' => 'aox', 'Aqoxy1G02094' => 'aox', 'Aqoxy2G01239' => 'aox', 'Aqoxy4G01870' => 'aox', 'Aqoxy7G00450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.36ZVTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71EM27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5D6C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH3WRE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3NCM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RIM768' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YB5YRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z36GDV' => 'arhy', 'AT1G08250' => 'ath', 'AT1G11790' => 'ath', 'AT2G27820' => 'ath', 'AT3G07630' => 'ath', 'AT3G44720' => 'ath', 'AT5G22630' => 'ath', 'ATR0693G304' => 'atr', 'ATR0794G109' => 'atr', 'ATR0820G120' => 'atr', 'ATR1159G064' => 'atr', 'Atru.chr10.2239' => 'acertr', 'Atru.chr3.3371' => 'acertr', 'Atru.chr6.3202' => 'acertr', 'AUR62006499' => 'cqu', 'AUR62012718' => 'cqu', 'AUR62021938' => 'cqu', 'AUR62023932' => 'cqu', 'AUR62025034' => 'cqu', 'AUR62025035' => 'cqu', 'AUR62038307' => 'cqu', 'AUR62043466' => 'cqu', 'BcaB02g10748' => 'bca', 'BcaB03g13231' => 'bca', 'BcaB03g14689' => 'bca', 'BcaB05g22716' => 'bca', 'BcaB06g28172' => 'bca', 'BcaB08g36413' => 'bca', 'BcaC01g02186' => 'bca', 'BcaC01g04272' => 'bca', 'BcaC02g08080' => 'bca', 'BcaC02g08227' => 'bca', 'BcaC03g13901' => 'bca', 'BcaC04g19593' => 'bca', 'BcaC04g20874' => 'bca', 'BcaC05g29557' => 'bca', 'BcaC06g35505' => 'bca', 'BcaC07g41954' => 'bca', 'BcaC07g41955' => 'bca', 'BcaC07g41956' => 'bca', 'BcaC07g42519' => 'bca', 'BcaC07g42520' => 'bca', 'BcaC07g42523' => 'bca', 'BcaC07g42524' => 'bca', 'BcaC07g42525' => 'bca', 'BcaC08g47480' => 'bca', 'BcaC08g47481' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00530' => 'bna', 'BolC2t07178H' => 'bol', 'BolC3t16567H' => 'bol', 'BolC4t27234H' => 'bol', 'BolC5t29728H' => 'bol', 'BolC5t34622H' => 'bol', 'BolC6t40321H' => 'bol', 'BolC7t42028H' => 'bol', 'BolC8t49125H' => 'bol', 'BolC8t52538H' => 'bol', 'BolC8t52539H' => 'bol', 'BolC9t56681H' => 'bol', 'BolC9t58266H' => 'bol', 'BolSC21t60294H' => 'bol', 'BraA02t05670Z' => 'bra', 'BraA03t12716Z' => 'bra', 'BraA04t17685Z' => 'bra', 'BraA05t22788Z' => 'bra', 'BraA06t24032Z' => 'bra', 'BraA06t25625Z' => 'bra', 'BraA07t27930Z' => 'bra', 'BraA08t35242Z' => 'bra', 'BraA09t38609Z' => 'bra', 'BraA10t43905Z' => 'bra', 'C02p11060' => 'bna', 'C03p42990' => 'bna', 'C03p67310' => 'bna', 'C04p56990' => 'bna', 'C04p58660' => 'bna', 'C05p09890' => 'bna', 'C05p59680' => 'bna', 'C06p19830' => 'bna', 'C06p53040' => 'bna', 'C07p15230' => 'bna', 'C08p50070' => 'bna', 'C08p50090' => 'bna', 'C09p38330' => 'bna', 'C09p53940' => 'bna', 'CAN.G1014.1' => 'can', 'CAN.G644.30' => 'can', 'CAN.G84.47' => 'can', 'CAN.G919.8' => 'can', 'CANSAT54G0113' => 'cansat', 'CANSAT54G1286' => 'cansat', 'CANSAT64G1020' => 'cansat', 'CARHR008080' => 'chi', 'CARHR008090' => 'chi', 'CARHR012130' => 'chi', 'CARHR038390' => 'chi', 'CARHR082330' => 'chi', 'CARHR120520' => 'chi', 'CARHR151470' => 'chi', 'CARHR190950' => 'chi', 'Carub.0001s0760' => 'cru', 'Carub.0001s1146' => 'cru', 'Carub.0003s0721' => 'cru', 'Carub.0004s0858' => 'cru', 'Carub.0005s1040' => 'cru', 'Carub.0006s2035' => 'cru', 'Carub.0015s0005' => 'cru', 'Ca_01607_v3' => 'car', 'Ca_01677_v3' => 'car', 'Ca_06087_v3' => 'car', 'Ca_19238_v3' => 'car', 'Ca_19373_v3' => 'car', 'Ca_21079_v3' => 'car', 'CBR_g54016' => 'cbr', 'CBR_g54018' => 'cbr', 'CBR_g54020' => 'cbr', 'Cc01_g09780' => 'ccan', 'Cc01_g11680' => 'ccan', 'Cc02_g15610' => 'ccan', 'Cc05_g04350' => 'ccan', 'Cc09_g01580' => 'ccan', 'CDE01G0795' => 'cde', 'CDE02G2024' => 'cde', 'CDE02G2260' => 'cde', 'CDE02G4561' => 'cde', 'CDE05G2733' => 'cde', 'CDE05G3422' => 'cde', 'CDE06G2003' => 'cde', 'CDE08G0576' => 'cde', 'CDE09G0048' => 'cde', 'CDE11G0805' => 'cde', 'Cfa003644' => 'cfa', 'Cfa006290' => 'cfa', 'Cfa010080' => 'cfa', 'Cfa011376' => 'cfa', 'Cfa011576' => 'cfa', 'Cfa011577' => 'cfa', 'Cfa014389' => 'cfa', 'Ciclev10006044m.g' => 'ccl', 'Ciclev10006954m.g' => 'ccl', 'Ciclev10015131m.g' => 'ccl', 'Ciclev10015580m.g' => 'ccl', 'Ciclev10028359m.g' => 'ccl', 'Ciclev10028573m.g' => 'ccl', 'CiPaw.03G159300' => 'cil', 'CiPaw.04G115100' => 'cil', 'CiPaw.09G092800' => 'cil', 'CiPaw.10G071800' => 'cil', 'CiPaw.13G105800' => 'cil', 'CiPaw.13G141000' => 'cil', 'CiPaw.14G103400' => 'cil', 'ClCG01G012700' => 'cla', 'ClCG01G012720' => 'cla', 'ClCG01G021920' => 'cla', 'ClCG02G008870' => 'cla', 'ClCG02G020840' => 'cla', 'ClCG02G021930' => 'cla', 'COL.COLO4_19302' => 'col', 'COL.COLO4_25262' => 'col', 'COL.COLO4_31788' => 'col', 'Cpa.g.c34684' => 'cpa', 'Cpa.g.c36520.1' => 'cpa', 'Cpa.g.c45626' => 'cpa', 'Cpa.g.sc121.17' => 'cpa', 'Cpa.g.sc13.22' => 'cpa', 'Cpa.g.sc87.88' => 'cpa', 'Cre06.g261800' => 'cre', 'CsaV3_1G014500' => 'csa', 'CsaV3_1G014510' => 'csa', 'CsaV3_2G034880' => 'csa', 'CsaV3_6G014760' => 'csa', 'CsaV3_6G021500' => 'csa', 'CsaV3_6G048980' => 'csa', 'CSS0002511' => 'camsi', 'CSS0007556' => 'camsi', 'CSS0008532' => 'camsi', 'CSS0009709' => 'camsi', 'CSS0010486' => 'camsi', 'CSS0016768' => 'camsi', 'CSS0023512' => 'camsi', 'CSS0025341' => 'camsi', 'CSS0027999' => 'camsi', 'CSS0028944' => 'camsi', 'CSS0032292' => 'camsi', 'CSS0032464' => 'camsi', 'CSS0037153' => 'camsi', 'CSS0039256' => 'camsi', 'CSS0048392' => 'camsi', 'CSS0050458' => 'camsi', 'DCAR_004224' => 'dca', 'DCAR_006147' => 'dca', 'DCAR_006465' => 'dca', 'DCAR_008159' => 'dca', 'DCAR_012164' => 'dca', 'DCAR_019764' => 'dca', 'Dinv05418' => 'din', 'Dinv10839' => 'din', 'Dinv12521' => 'din', 'Dinv13900' => 'din', 'Dinv29426' => 'din', 'Duzib150G0263' => 'dzi', 'Duzib168G1178' => 'dzi', 'Duzib168G1924' => 'dzi', 'Duzib170G0299' => 'dzi', 'Duzib170G0813' => 'dzi', 'Duzib235G1128' => 'dzi', 'Duzib248G1060' => 'dzi', 'ECA232G1910' => 'eca', 'ECA233G4621' => 'eca', 'ECA238G1216' => 'eca', 'ECA238G1784' => 'eca', 'ECA248G1242' => 'eca', 'EL10Ac8g20071' => 'bvu', 'EL10Ac9g21086' => 'bvu', 'EL10Ac9g22407' => 'bvu', 'EL10Ac9g22412' => 'bvu', 'Eucgr.A01119' => 'egr', 'Eucgr.E04043' => 'egr', 'Eucgr.J00428' => 'egr', 'Eucgr.J00958' => 'egr', 'FAN11G3091' => 'fan', 'FAN11G3651' => 'fan', 'FAN16G2566' => 'fan', 'FAN21G3155' => 'fan', 'FAN21G3400' => 'fan', 'FAN21G3543' => 'fan', 'FAN25G0234' => 'fan', 'FAN25G1422' => 'fan', 'FAN25G3392' => 'fan', 'FvH4_3g01940' => 'fve', 'FvH4_3g29870' => 'fve', 'FvH4_3g33680' => 'fve', 'Glyma.09G004200' => 'gma', 'Glyma.11G151288' => 'gma', 'Glyma.11G189100' => 'gma', 'Glyma.12G072500' => 'gma', 'Glyma.12G085500' => 'gma', 'Glyma.12G181800' => 'gma', 'Glyma.12G193000' => 'gma', 'Glyma.13G309300' => 'gma', 'Glyma.13G319000' => 'gma', 'Glyma.17G012600' => 'gma', 'Gohir.A06G148600' => 'ghi', 'Gohir.A07G115800' => 'ghi', 'Gohir.A08G003600' => 'ghi', 'Gohir.A09G093300' => 'ghi', 'Gohir.A09G105400' => 'ghi', 'Gohir.A09G105500' => 'ghi', 'Gohir.D06G154600' => 'ghi', 'Gohir.D07G120200' => 'ghi', 'Gohir.D08G013900' => 'ghi', 'Gohir.D09G093100' => 'ghi', 'Gohir.D09G102200' => 'ghi', 'Gohir.D09G102300' => 'ghi', 'Gorai.001G129400' => 'gra', 'Gorai.004G008200' => 'gra', 'Gorai.006G109800' => 'gra', 'Gorai.006G119500' => 'gra', 'Gorai.006G121300' => 'gra', 'Gorai.010G180700' => 'gra', 'GSVIVG01012716001' => 'vvi', 'GSVIVG01025118001' => 'vvi', 'GSVIVG01030439001' => 'vvi', 'GSVIVG01031397001' => 'vvi', 'HanXRQChr01g0004201' => 'han', 'HanXRQChr02g0054941' => 'han', 'HanXRQChr05g0141811' => 'han', 'HanXRQChr07g0197751' => 'han', 'HanXRQChr11g0346691' => 'han', 'HanXRQChr13g0396971' => 'han', 'HanXRQChr14g0432951' => 'han', 'HanXRQChr14g0452001' => 'han', 'HanXRQChr15g0496681' => 'han', 'HanXRQChr17g0557491' => 'han', 'HanXRQChr17g0557501' => 'han', 'Haze_06809' => 'cav', 'Haze_12852' => 'cav', 'Haze_15850' => 'cav', 'Haze_23446' => 'cav', 'Haze_23942' => 'cav', 'Haze_23943' => 'cav', 'Hma1.2p1_0091F.1_g046450' => 'hma', 'Hma1.2p1_0128F.1_g059910' => 'hma', 'Hma1.2p1_0249F.1_g102260' => 'hma', 'Hma1.2p1_0453F.1_g156190' => 'hma', 'Hma1.2p1_0695F.1_g204380' => 'hma', 'Hma1.2p1_0749F.1_g212650' => 'hma', 'Hma1.2p1_2156F.1_g315420' => 'hma', 'Hma1.2p1_2686F.1_g326940' => 'hma', 'HPP92_006428' => 'vpl', 'HPP92_012069' => 'vpl', 'HPP92_014129' => 'vpl', 'HPP92_014133' => 'vpl', 'HPP92_017315' => 'vpl', 'HPP92_026445' => 'vpl', 'HPP92_026446' => 'vpl', 'Hund00774' => 'sun', 'Hund07682' => 'sun', 'Hund21413' => 'sun', 'Hund23462' => 'sun', 'Hund23463' => 'sun', 'Lalb_Chr03g0027911' => 'lal', 'Lalb_Chr13g0304271' => 'lal', 'Lalb_Chr19g0137471' => 'lal', 'Lalb_Chr22g0350651' => 'lal', 'Lalb_Chr24g0395151' => 'lal', 'Lj1A1231T40' => 'lonja', 'Lj1A221T48' => 'lonja', 'Lj1C924T12' => 'lonja', 'Lj2C993G6' => 'lonja', 'Lj3g0005790' => 'lja', 'Lj3g0015432' => 'lja', 'Lj3g0017722' => 'lja', 'Lj3g0018497' => 'lja', 'Lj4g0025071' => 'lja', 'Lsat_1_v5_gn_1_129680' => 'lsa', 'Lsat_1_v5_gn_2_25321' => 'lsa', 'Lsat_1_v5_gn_2_95461' => 'lsa', 'Lsat_1_v5_gn_4_159620' => 'lsa', 'Lsat_1_v5_gn_6_41301' => 'lsa', 'Lsat_1_v5_gn_6_74660' => 'lsa', 'Lsat_1_v5_gn_7_11520' => 'lsa', 'Lsat_1_v5_gn_9_67680' => 'lsa', 'Manes.04G008300' => 'mes', 'Manes.04G008400' => 'mes', 'Manes.04G026500' => 'mes', 'Manes.10G135300' => 'mes', 'Manes.11G157300' => 'mes', 'Manes.12G074000' => 'mes', 'Manes.16G006200' => 'mes', 'Manes.17G026400' => 'mes', 'Mapoly0024s0086' => 'mpo', 'Mapoly0024s0087' => 'mpo', 'Mapoly0071s0057' => 'mpo', 'Mapoly0204s0012' => 'mpo', 'MBI04_g37681_MAGBIO' => 'mbi', 'MBI05_g17779_MAGBIO' => 'mbi', 'MBI12_g31184_MAGBIO' => 'mbi', 'MBI17_g11083_MAGBIO' => 'mbi', 'MBI18_g03883_MAGBIO' => 'mbi', 'MBI18_g28940_MAGBIO' => 'mbi', 'MCO01G690' => 'mco', 'MD03G1109900' => 'mdo', 'MD03G1134800' => 'mdo', 'MD05G1348000' => 'mdo', 'MD10G1322400' => 'mdo', 'MD11G1123300' => 'mdo', 'MD11G1157600' => 'mdo', 'Medtr2g084875' => 'mtr', 'Medtr2g088130' => 'mtr', 'Medtr4g055310' => 'mtr', 'Medtr4g061070' => 'mtr', 'Medtr4g132250' => 'mtr', 'MELO3C004795.2' => 'cme', 'MELO3C004797.2' => 'cme', 'MELO3C007396.2' => 'cme', 'MELO3C019277.2' => 'cme', 'MELO3C021449.2' => 'cme', 'MELO3C025736.2' => 'cme', 'Migut.D02175' => 'egut', 'Migut.H01573' => 'egut', 'Migut.M01327' => 'egut', 'Migut.N02513' => 'egut', 'MSTRG.14638' => 'ama', 'MSTRG.18632' => 'ama', 'MSTRG.7203' => 'ama', 'Nitab4.5_0000533g0140' => 'nta', 'Nitab4.5_0000888g0150' => 'nta', 'Nitab4.5_0001453g0040' => 'nta', 'Nitab4.5_0002827g0090' => 'nta', 'Nitab4.5_0003082g0040' => 'nta', 'Nitab4.5_0007799g0040' => 'nta', 'Nitab4.5_0008983g0010' => 'nta', 'Nitab4.5_0009017g0020' => 'nta', 'Nn1g02132' => 'nnu', 'Nn1g03492' => 'nnu', 'Nn1g03493' => 'nnu', 'Nn1g03494' => 'nnu', 'Nn1g07164' => 'nnu', 'Nn1g07291' => 'nnu', 'Nn2g10655' => 'nnu', 'Nn2g11652' => 'nnu', 'Nn2g14008' => 'nnu', 'Nn3g17476' => 'nnu', 'Nn3g17477' => 'nnu', 'Nn4g22370' => 'nnu', 'Nn4g25255' => 'nnu', 'Nn5g27755' => 'nnu', 'Nn6g34260' => 'nnu', 'Nn6g35041' => 'nnu', 'Oeu005924.1' => 'oeu', 'Oeu008383.1' => 'oeu', 'Oeu014928.1' => 'oeu', 'Oeu019889.1' => 'oeu', 'Oeu022271.1' => 'oeu', 'Oeu025271.1' => 'oeu', 'Oeu036302.1' => 'oeu', 'Oeu044100.1' => 'oeu', 'Os01g0528300' => 'osa', 'Os03g0286200' => 'osa', 'Os04g0406600' => 'osa', 'Os07g0512000' => 'osa', 'Os07g0694600' => 'osa', 'Os08g0411000' => 'osa', 'Os09g0565700' => 'osa', 'Os09g0566050' => 'osa', 'Os10g0523700' => 'osa', 'Peaxi162Scf00002g00514' => 'pax', 'Peaxi162Scf00047g01817' => 'pax', 'Peaxi162Scf00114g00001' => 'pax', 'Peaxi162Scf00147g00613' => 'pax', 'Peaxi162Scf00389g00425' => 'pax', 'PGR042G1139' => 'pgr', 'PGR042G3273' => 'pgr', 'PGR102G2180' => 'pgr', 'PGR119G0234' => 'pgr', 'PGR119G0668' => 'pgr', 'PGSC0003DMG400007122' => 'stu', 'PGSC0003DMG400016478' => 'stu', 'PGSC0003DMG400025374' => 'stu', 'PGSC0003DMG400026536' => 'stu', 'Phvul.003G079600' => 'pvu', 'Phvul.005G115600' => 'pvu', 'Phvul.005G127100' => 'pvu', 'Phvul.006G149500' => 'pvu', 'Phvul.006G149600' => 'pvu', 'Phvul.011G071800' => 'pvu', 'Phvul.011G090400' => 'pvu', 'Potri.004G013400' => 'ptr', 'Potri.004G188100' => 'ptr', 'Potri.008G195500' => 'ptr', 'Potri.009G148800' => 'ptr', 'Potri.011G004700' => 'ptr', 'Pp3c17_22810' => 'ppa', 'Pp3c18_4480' => 'ppa', 'Pp3c19_13030' => 'ppa', 'Pp3c1_33620' => 'ppa', 'Pp3c2_9380' => 'ppa', 'PRCOL_00001023' => 'pco', 'Prupe.3G216300' => 'ppe', 'Prupe.4G019500' => 'ppe', 'Prupe.6G092500' => 'ppe', 'Prupe.6G119200' => 'ppe', 'Psat0s1945g0080' => 'psa', 'Psat0s4167g0040' => 'psa', 'Psat1g185800' => 'psa', 'Psat4g006440' => 'psa', 'Psat4g006480' => 'psa', 'Psat4g168120' => 'psa', 'Psat5g255680' => 'psa', 'Psat5g261760' => 'psa', 'Psat7g222120' => 'psa', 'PSO063G7252' => 'pso', 'PSO170G4778' => 'pso', 'PSO210G2249' => 'pso', 'PSO339G2411' => 'pso', 'PSO339G2457' => 'pso', 'PSO339G2854' => 'pso', 'PSO339G4288' => 'pso', 'PSO339G4615' => 'pso', 'PSO384G2796' => 'pso', 'PSO384G2940' => 'pso', 'PSO384G4227' => 'pso', 'PSO478G1425' => 'pso', 'PSO541G3863' => 'pso', 'PSO675G0507' => 'pso', 'PSO782G0338' => 'pso', 'PSO832G0644' => 'pso', 'QL01p013664' => 'qlo', 'QL01p036598' => 'qlo', 'QL05p072984' => 'qlo', 'QL08p005768' => 'qlo', 'QL08p032743' => 'qlo', 'QL93p0073_0439' => 'qlo', 'QL93p0073_0444' => 'qlo', 'RcHm_v2.0_Chr5g0002851' => 'rch', 'RcHm_v2.0_Chr5g0055201' => 'rch', 'RcHm_v2.0_Chr5g0061191' => 'rch', 'RcHm_v2.0_Chr7g0203231' => 'rch', 'Rhsim01G0208100' => 'rsi', 'Rhsim01G0208200' => 'rsi', 'Rhsim02G0106500' => 'rsi', 'Rhsim03G0107900' => 'rsi', 'Rhsim06G0163400' => 'rsi', 'Rhsim13G0105200' => 'rsi', 'Sabra04G0006300' => 'sbr', 'Sabra04G0127000' => 'sbr', 'Sabra08G0148700' => 'sbr', 'Sabra09G0117400' => 'sbr', 'SalBow1G3326' => 'sbo', 'SalBow3G3228' => 'sbo', 'SalBow6G1634' => 'sbo', 'SalBow6G3603' => 'sbo', 'SalBow6G5266' => 'sbo', 'SalBow7G2265' => 'sbo', 'SalBow8G0850' => 'sbo', 'SalBow8G2592' => 'sbo', 'Sc05g0009240' => 'sci', 'Sc12g0002300' => 'sci', 'Sc21g0000100' => 'sci', 'Sc21g0004720' => 'sci', 'Sed0002949' => 'sed', 'Sed0004114' => 'sed', 'Sed0004306' => 'sed', 'Sed0006172' => 'sed', 'Sed0008413' => 'sed', 'Sed0013809' => 'sed', 'Sed0019556' => 'sed', 'SEGI_03570' => 'sgi', 'SEGI_07859' => 'sgi', 'SEGI_15042' => 'sgi', 'SEGI_16263' => 'sgi', 'SEGI_16552' => 'sgi', 'SEGI_24331' => 'sgi', 'SEGI_27316' => 'sgi', 'SEGI_29521' => 'sgi', 'SEGI_41342' => 'sgi', 'SGA_v2.0_scaffold27G11617' => 'sas', 'SGA_v2.0_scaffold316G48428' => 'sas', 'SGA_v2.0_scaffold49G18261' => 'sas', 'SGA_v2.0_scaffold7G03831' => 'sas', 'SGA_v2.0_scaffold93G28359' => 'sas', 'SHI02210' => 'shi', 'SHI06028' => 'shi', 'SHI06321' => 'shi', 'SMO111G0012' => 'smo', 'SMO228G0080' => 'smo', 'SMO356G0756' => 'smo', 'Solyc02g080620.3' => 'sly', 'Solyc06g074530.1' => 'sly', 'Solyc11g066890.1' => 'sly', 'Solyc11g072520.3' => 'sly', 'Sopen02g025330' => 'spe', 'Sopen06g031000' => 'spe', 'Sopen09g008240' => 'spe', 'Sopen09g025210' => 'spe', 'Sopen11g026600' => 'spe', 'Sopen11g030170' => 'spe', 'Sp1g10420' => 'spa', 'Sp3g06570' => 'spa', 'Sp4g10660' => 'spa', 'Sp5g16460' => 'spa', 'Sp6g22710' => 'spa', 'TAR365G0112' => 'tar', 'TAR369G0717' => 'tar', 'TAR374G0976' => 'tar', 'TAR623G1128' => 'tar', 'TAR626G1937' => 'tar', 'TAR627G0123' => 'tar', 'TAR628G0305' => 'tar', 'TAR636G1176' => 'tar', 'TAR636G2442' => 'tar', 'THA.LOC104800556' => 'tha', 'THA.LOC104809501' => 'tha', 'THA.LOC104815126' => 'tha', 'THA.LOC104815732' => 'tha', 'THA.LOC104823528' => 'tha', 'Thecc.02G365600' => 'tca', 'Thecc.06G222300' => 'tca', 'Thecc.09G261800' => 'tca', 'Thecc.09G291400' => 'tca', 'Thhalv10003028m.g' => 'esa', 'Thhalv10007886m.g' => 'esa', 'Thhalv10016085m.g' => 'esa', 'Thhalv10016681m.g' => 'esa', 'Thhalv10020951m.g' => 'esa', 'TPR.G15598' => 'tpr', 'TPR.G29305' => 'tpr', 'TPR.G32395' => 'tpr', 'TPR.G36998' => 'tpr', 'TPR.G4227' => 'tpr', 'TWI18G1433' => 'twi', 'TWI31G0755' => 'twi', 'TWI38G0912' => 'twi', 'TWI75G1097' => 'twi', 'TWI75G1619' => 'twi', 'TWI79G1336' => 'twi', 'unitig_0.g943' => 'ugi', 'unitig_0.g944' => 'ugi', 'unitig_22.g6646' => 'ugi', 'unitig_37.g12681' => 'ugi', 'unitig_8.g3290' => 'ugi', 'vmacro03278' => 'vma', 'vmacro12197' => 'vma', 'vmacro14478' => 'vma', 'vmacro15787' => 'vma', 'vmacro15789' => 'vma', 'vmacro15790' => 'vma', 'vmacro15806' => 'vma', 'vmacro22907' => 'vma', 'vmacro22908' => 'vma', 'vmacro22909' => 'vma', 'vmacro23108' => 'vma', 'VMungo0540G0540' => 'vmu', 'VMungo0540G2468' => 'vmu', 'VMungo1080G0390' => 'vmu', 'VMungo1080G1165' => 'vmu', 'VMungo1127G0170' => 'vmu', 'VMungo1127G2099' => 'vmu', 'VMungo1215G3013' => 'vmu', 'Zm00001eb013110' => 'zma', 'Zm00001eb084260' => 'zma', 'Zm00001eb096110' => 'zma', 'Zm00001eb217510' => 'zma', 'Zm00001eb322550' => 'zma', 'Zm00001eb390770' => 'zma', 'Zm00001eb397170' => 'zma', 'Zm00001eb404610' => 'zma', 'Zm00001eb421790' => 'zma' ), 'gf_id' => 'HOM05D000911', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000911' ), 'data_identifier' => 'HOM05D000911', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000911', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27780' => 'bna', 'A03p35380' => 'bna', 'A04p21160' => 'bna', 'A05p40570' => 'bna', 'A06p26900' => 'bna', 'A08p33230' => 'bna', 'A09p65960' => 'bna', 'A10p18290' => 'bna', 'Aa31LG1G12990' => 'aar', 'Aa31LG1G2980' => 'aar', 'Aa31LG4G14320' => 'aar', 'Aa31LG7G11800' => 'aar', 'Aa31sc36G50' => 'aar', 'Aa31sc36G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3721' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5459' => 'aag', 'Actinidia03028' => 'ach', 'Actinidia03753' => 'ach', 'Actinidia04187' => 'ach', 'Actinidia05509' => 'ach', 'Actinidia24180' => 'ach', 'Actinidia26906' => 'ach', 'Actinidia37097' => 'ach', 'Actinidia38249' => 'ach', 'Ah.01g003470' => 'amhyb', 'Ah.01g004580' => 'amhyb', 'Ah.01g014850' => 'amhyb', 'Ah.01g016830' => 'amhyb', 'Ah.14g088000' => 'amhyb', 'AL1G22980' => 'aly', 'AL3G18990' => 'aly', 'AL4G22440' => 'aly', 'AL4G33180' => 'aly', 'AL5G22920' => 'aly', 'AL6G33660' => 'aly', 'AL8G20720' => 'aly', 'Aqoxy1G00935' => 'aox', 'Aqoxy1G02094' => 'aox', 'Aqoxy2G01239' => 'aox', 'Aqoxy4G01870' => 'aox', 'Aqoxy7G00450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.36ZVTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71EM27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5D6C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH3WRE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3NCM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RIM768' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YB5YRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z36GDV' => 'arhy', 'AT1G08250' => 'ath', 'AT1G11790' => 'ath', 'AT2G27820' => 'ath', 'AT3G07630' => 'ath', 'AT3G44720' => 'ath', 'AT5G22630' => 'ath', 'ATR0693G304' => 'atr', 'ATR0794G109' => 'atr', 'ATR0820G120' => 'atr', 'ATR1159G064' => 'atr', 'Atru.chr10.2239' => 'acertr', 'Atru.chr3.3371' => 'acertr', 'Atru.chr6.3202' => 'acertr', 'AUR62006499' => 'cqu', 'AUR62012718' => 'cqu', 'AUR62021938' => 'cqu', 'AUR62023932' => 'cqu', 'AUR62025034' => 'cqu', 'AUR62025035' => 'cqu', 'AUR62038307' => 'cqu', 'AUR62043466' => 'cqu', 'BcaB02g10748' => 'bca', 'BcaB03g13231' => 'bca', 'BcaB03g14689' => 'bca', 'BcaB05g22716' => 'bca', 'BcaB06g28172' => 'bca', 'BcaB08g36413' => 'bca', 'BcaC01g02186' => 'bca', 'BcaC01g04272' => 'bca', 'BcaC02g08080' => 'bca', 'BcaC02g08227' => 'bca', 'BcaC03g13901' => 'bca', 'BcaC04g19593' => 'bca', 'BcaC04g20874' => 'bca', 'BcaC05g29557' => 'bca', 'BcaC06g35505' => 'bca', 'BcaC07g41954' => 'bca', 'BcaC07g41955' => 'bca', 'BcaC07g41956' => 'bca', 'BcaC07g42519' => 'bca', 'BcaC07g42520' => 'bca', 'BcaC07g42523' => 'bca', 'BcaC07g42524' => 'bca', 'BcaC07g42525' => 'bca', 'BcaC08g47480' => 'bca', 'BcaC08g47481' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00530' => 'bna', 'BolC2t07178H' => 'bol', 'BolC3t16567H' => 'bol', 'BolC4t27234H' => 'bol', 'BolC5t29728H' => 'bol', 'BolC5t34622H' => 'bol', 'BolC6t40321H' => 'bol', 'BolC7t42028H' => 'bol', 'BolC8t49125H' => 'bol', 'BolC8t52538H' => 'bol', 'BolC8t52539H' => 'bol', 'BolC9t56681H' => 'bol', 'BolC9t58266H' => 'bol', 'BolSC21t60294H' => 'bol', 'BraA02t05670Z' => 'bra', 'BraA03t12716Z' => 'bra', 'BraA04t17685Z' => 'bra', 'BraA05t22788Z' => 'bra', 'BraA06t24032Z' => 'bra', 'BraA06t25625Z' => 'bra', 'BraA07t27930Z' => 'bra', 'BraA08t35242Z' => 'bra', 'BraA09t38609Z' => 'bra', 'BraA10t43905Z' => 'bra', 'C02p11060' => 'bna', 'C03p42990' => 'bna', 'C03p67310' => 'bna', 'C04p56990' => 'bna', 'C04p58660' => 'bna', 'C05p09890' => 'bna', 'C05p59680' => 'bna', 'C06p19830' => 'bna', 'C06p53040' => 'bna', 'C07p15230' => 'bna', 'C08p50070' => 'bna', 'C08p50090' => 'bna', 'C09p38330' => 'bna', 'C09p53940' => 'bna', 'CAN.G1014.1' => 'can', 'CAN.G644.30' => 'can', 'CAN.G84.47' => 'can', 'CAN.G919.8' => 'can', 'CANSAT54G0113' => 'cansat', 'CANSAT54G1286' => 'cansat', 'CANSAT64G1020' => 'cansat', 'CARHR008080' => 'chi', 'CARHR008090' => 'chi', 'CARHR012130' => 'chi', 'CARHR038390' => 'chi', 'CARHR082330' => 'chi', 'CARHR120520' => 'chi', 'CARHR151470' => 'chi', 'CARHR190950' => 'chi', 'Carub.0001s0760' => 'cru', 'Carub.0001s1146' => 'cru', 'Carub.0003s0721' => 'cru', 'Carub.0004s0858' => 'cru', 'Carub.0005s1040' => 'cru', 'Carub.0006s2035' => 'cru', 'Carub.0015s0005' => 'cru', 'Ca_01607_v3' => 'car', 'Ca_01677_v3' => 'car', 'Ca_06087_v3' => 'car', 'Ca_19238_v3' => 'car', 'Ca_19373_v3' => 'car', 'Ca_21079_v3' => 'car', 'CBR_g54016' => 'cbr', 'CBR_g54018' => 'cbr', 'CBR_g54020' => 'cbr', 'Cc01_g09780' => 'ccan', 'Cc01_g11680' => 'ccan', 'Cc02_g15610' => 'ccan', 'Cc05_g04350' => 'ccan', 'Cc09_g01580' => 'ccan', 'CDE01G0795' => 'cde', 'CDE02G2024' => 'cde', 'CDE02G2260' => 'cde', 'CDE02G4561' => 'cde', 'CDE05G2733' => 'cde', 'CDE05G3422' => 'cde', 'CDE06G2003' => 'cde', 'CDE08G0576' => 'cde', 'CDE09G0048' => 'cde', 'CDE11G0805' => 'cde', 'Cfa003644' => 'cfa', 'Cfa006290' => 'cfa', 'Cfa010080' => 'cfa', 'Cfa011376' => 'cfa', 'Cfa011576' => 'cfa', 'Cfa011577' => 'cfa', 'Cfa014389' => 'cfa', 'Ciclev10006044m.g' => 'ccl', 'Ciclev10006954m.g' => 'ccl', 'Ciclev10015131m.g' => 'ccl', 'Ciclev10015580m.g' => 'ccl', 'Ciclev10028359m.g' => 'ccl', 'Ciclev10028573m.g' => 'ccl', 'CiPaw.03G159300' => 'cil', 'CiPaw.04G115100' => 'cil', 'CiPaw.09G092800' => 'cil', 'CiPaw.10G071800' => 'cil', 'CiPaw.13G105800' => 'cil', 'CiPaw.13G141000' => 'cil', 'CiPaw.14G103400' => 'cil', 'ClCG01G012700' => 'cla', 'ClCG01G012720' => 'cla', 'ClCG01G021920' => 'cla', 'ClCG02G008870' => 'cla', 'ClCG02G020840' => 'cla', 'ClCG02G021930' => 'cla', 'COL.COLO4_19302' => 'col', 'COL.COLO4_25262' => 'col', 'COL.COLO4_31788' => 'col', 'Cpa.g.c34684' => 'cpa', 'Cpa.g.c36520.1' => 'cpa', 'Cpa.g.c45626' => 'cpa', 'Cpa.g.sc121.17' => 'cpa', 'Cpa.g.sc13.22' => 'cpa', 'Cpa.g.sc87.88' => 'cpa', 'Cre06.g261800' => 'cre', 'CsaV3_1G014500' => 'csa', 'CsaV3_1G014510' => 'csa', 'CsaV3_2G034880' => 'csa', 'CsaV3_6G014760' => 'csa', 'CsaV3_6G021500' => 'csa', 'CsaV3_6G048980' => 'csa', 'CSS0002511' => 'camsi', 'CSS0007556' => 'camsi', 'CSS0008532' => 'camsi', 'CSS0009709' => 'camsi', 'CSS0010486' => 'camsi', 'CSS0016768' => 'camsi', 'CSS0023512' => 'camsi', 'CSS0025341' => 'camsi', 'CSS0027999' => 'camsi', 'CSS0028944' => 'camsi', 'CSS0032292' => 'camsi', 'CSS0032464' => 'camsi', 'CSS0037153' => 'camsi', 'CSS0039256' => 'camsi', 'CSS0048392' => 'camsi', 'CSS0050458' => 'camsi', 'DCAR_004224' => 'dca', 'DCAR_006147' => 'dca', 'DCAR_006465' => 'dca', 'DCAR_008159' => 'dca', 'DCAR_012164' => 'dca', 'DCAR_019764' => 'dca', 'Dinv05418' => 'din', 'Dinv10839' => 'din', 'Dinv12521' => 'din', 'Dinv13900' => 'din', 'Dinv29426' => 'din', 'Duzib150G0263' => 'dzi', 'Duzib168G1178' => 'dzi', 'Duzib168G1924' => 'dzi', 'Duzib170G0299' => 'dzi', 'Duzib170G0813' => 'dzi', 'Duzib235G1128' => 'dzi', 'Duzib248G1060' => 'dzi', 'ECA232G1910' => 'eca', 'ECA233G4621' => 'eca', 'ECA238G1216' => 'eca', 'ECA238G1784' => 'eca', 'ECA248G1242' => 'eca', 'EL10Ac8g20071' => 'bvu', 'EL10Ac9g21086' => 'bvu', 'EL10Ac9g22407' => 'bvu', 'EL10Ac9g22412' => 'bvu', 'Eucgr.A01119' => 'egr', 'Eucgr.E04043' => 'egr', 'Eucgr.J00428' => 'egr', 'Eucgr.J00958' => 'egr', 'FAN11G3091' => 'fan', 'FAN11G3651' => 'fan', 'FAN16G2566' => 'fan', 'FAN21G3155' => 'fan', 'FAN21G3400' => 'fan', 'FAN21G3543' => 'fan', 'FAN25G0234' => 'fan', 'FAN25G1422' => 'fan', 'FAN25G3392' => 'fan', 'FvH4_3g01940' => 'fve', 'FvH4_3g29870' => 'fve', 'FvH4_3g33680' => 'fve', 'Glyma.09G004200' => 'gma', 'Glyma.11G151288' => 'gma', 'Glyma.11G189100' => 'gma', 'Glyma.12G072500' => 'gma', 'Glyma.12G085500' => 'gma', 'Glyma.12G181800' => 'gma', 'Glyma.12G193000' => 'gma', 'Glyma.13G309300' => 'gma', 'Glyma.13G319000' => 'gma', 'Glyma.17G012600' => 'gma', 'Gohir.A06G148600' => 'ghi', 'Gohir.A07G115800' => 'ghi', 'Gohir.A08G003600' => 'ghi', 'Gohir.A09G093300' => 'ghi', 'Gohir.A09G105400' => 'ghi', 'Gohir.A09G105500' => 'ghi', 'Gohir.D06G154600' => 'ghi', 'Gohir.D07G120200' => 'ghi', 'Gohir.D08G013900' => 'ghi', 'Gohir.D09G093100' => 'ghi', 'Gohir.D09G102200' => 'ghi', 'Gohir.D09G102300' => 'ghi', 'Gorai.001G129400' => 'gra', 'Gorai.004G008200' => 'gra', 'Gorai.006G109800' => 'gra', 'Gorai.006G119500' => 'gra', 'Gorai.006G121300' => 'gra', 'Gorai.010G180700' => 'gra', 'GSVIVG01012716001' => 'vvi', 'GSVIVG01025118001' => 'vvi', 'GSVIVG01030439001' => 'vvi', 'GSVIVG01031397001' => 'vvi', 'HanXRQChr01g0004201' => 'han', 'HanXRQChr02g0054941' => 'han', 'HanXRQChr05g0141811' => 'han', 'HanXRQChr07g0197751' => 'han', 'HanXRQChr11g0346691' => 'han', 'HanXRQChr13g0396971' => 'han', 'HanXRQChr14g0432951' => 'han', 'HanXRQChr14g0452001' => 'han', 'HanXRQChr15g0496681' => 'han', 'HanXRQChr17g0557491' => 'han', 'HanXRQChr17g0557501' => 'han', 'Haze_06809' => 'cav', 'Haze_12852' => 'cav', 'Haze_15850' => 'cav', 'Haze_23446' => 'cav', 'Haze_23942' => 'cav', 'Haze_23943' => 'cav', 'Hma1.2p1_0091F.1_g046450' => 'hma', 'Hma1.2p1_0128F.1_g059910' => 'hma', 'Hma1.2p1_0249F.1_g102260' => 'hma', 'Hma1.2p1_0453F.1_g156190' => 'hma', 'Hma1.2p1_0695F.1_g204380' => 'hma', 'Hma1.2p1_0749F.1_g212650' => 'hma', 'Hma1.2p1_2156F.1_g315420' => 'hma', 'Hma1.2p1_2686F.1_g326940' => 'hma', 'HPP92_006428' => 'vpl', 'HPP92_012069' => 'vpl', 'HPP92_014129' => 'vpl', 'HPP92_014133' => 'vpl', 'HPP92_017315' => 'vpl', 'HPP92_026445' => 'vpl', 'HPP92_026446' => 'vpl', 'Hund00774' => 'sun', 'Hund07682' => 'sun', 'Hund21413' => 'sun', 'Hund23462' => 'sun', 'Hund23463' => 'sun', 'Lalb_Chr03g0027911' => 'lal', 'Lalb_Chr13g0304271' => 'lal', 'Lalb_Chr19g0137471' => 'lal', 'Lalb_Chr22g0350651' => 'lal', 'Lalb_Chr24g0395151' => 'lal', 'Lj1A1231T40' => 'lonja', 'Lj1A221T48' => 'lonja', 'Lj1C924T12' => 'lonja', 'Lj2C993G6' => 'lonja', 'Lj3g0005790' => 'lja', 'Lj3g0015432' => 'lja', 'Lj3g0017722' => 'lja', 'Lj3g0018497' => 'lja', 'Lj4g0025071' => 'lja', 'Lsat_1_v5_gn_1_129680' => 'lsa', 'Lsat_1_v5_gn_2_25321' => 'lsa', 'Lsat_1_v5_gn_2_95461' => 'lsa', 'Lsat_1_v5_gn_4_159620' => 'lsa', 'Lsat_1_v5_gn_6_41301' => 'lsa', 'Lsat_1_v5_gn_6_74660' => 'lsa', 'Lsat_1_v5_gn_7_11520' => 'lsa', 'Lsat_1_v5_gn_9_67680' => 'lsa', 'Manes.04G008300' => 'mes', 'Manes.04G008400' => 'mes', 'Manes.04G026500' => 'mes', 'Manes.10G135300' => 'mes', 'Manes.11G157300' => 'mes', 'Manes.12G074000' => 'mes', 'Manes.16G006200' => 'mes', 'Manes.17G026400' => 'mes', 'Mapoly0024s0086' => 'mpo', 'Mapoly0024s0087' => 'mpo', 'Mapoly0071s0057' => 'mpo', 'Mapoly0204s0012' => 'mpo', 'MBI04_g37681_MAGBIO' => 'mbi', 'MBI05_g17779_MAGBIO' => 'mbi', 'MBI12_g31184_MAGBIO' => 'mbi', 'MBI17_g11083_MAGBIO' => 'mbi', 'MBI18_g03883_MAGBIO' => 'mbi', 'MBI18_g28940_MAGBIO' => 'mbi', 'MCO01G690' => 'mco', 'MD03G1109900' => 'mdo', 'MD03G1134800' => 'mdo', 'MD05G1348000' => 'mdo', 'MD10G1322400' => 'mdo', 'MD11G1123300' => 'mdo', 'MD11G1157600' => 'mdo', 'Medtr2g084875' => 'mtr', 'Medtr2g088130' => 'mtr', 'Medtr4g055310' => 'mtr', 'Medtr4g061070' => 'mtr', 'Medtr4g132250' => 'mtr', 'MELO3C004795.2' => 'cme', 'MELO3C004797.2' => 'cme', 'MELO3C007396.2' => 'cme', 'MELO3C019277.2' => 'cme', 'MELO3C021449.2' => 'cme', 'MELO3C025736.2' => 'cme', 'Migut.D02175' => 'egut', 'Migut.H01573' => 'egut', 'Migut.M01327' => 'egut', 'Migut.N02513' => 'egut', 'MSTRG.14638' => 'ama', 'MSTRG.18632' => 'ama', 'MSTRG.7203' => 'ama', 'Nitab4.5_0000533g0140' => 'nta', 'Nitab4.5_0000888g0150' => 'nta', 'Nitab4.5_0001453g0040' => 'nta', 'Nitab4.5_0002827g0090' => 'nta', 'Nitab4.5_0003082g0040' => 'nta', 'Nitab4.5_0007799g0040' => 'nta', 'Nitab4.5_0008983g0010' => 'nta', 'Nitab4.5_0009017g0020' => 'nta', 'Nn1g02132' => 'nnu', 'Nn1g03492' => 'nnu', 'Nn1g03493' => 'nnu', 'Nn1g03494' => 'nnu', 'Nn1g07164' => 'nnu', 'Nn1g07291' => 'nnu', 'Nn2g10655' => 'nnu', 'Nn2g11652' => 'nnu', 'Nn2g14008' => 'nnu', 'Nn3g17476' => 'nnu', 'Nn3g17477' => 'nnu', 'Nn4g22370' => 'nnu', 'Nn4g25255' => 'nnu', 'Nn5g27755' => 'nnu', 'Nn6g34260' => 'nnu', 'Nn6g35041' => 'nnu', 'Oeu005924.1' => 'oeu', 'Oeu008383.1' => 'oeu', 'Oeu014928.1' => 'oeu', 'Oeu019889.1' => 'oeu', 'Oeu022271.1' => 'oeu', 'Oeu025271.1' => 'oeu', 'Oeu036302.1' => 'oeu', 'Oeu044100.1' => 'oeu', 'Os01g0528300' => 'osa', 'Os03g0286200' => 'osa', 'Os04g0406600' => 'osa', 'Os07g0512000' => 'osa', 'Os07g0694600' => 'osa', 'Os08g0411000' => 'osa', 'Os09g0565700' => 'osa', 'Os09g0566050' => 'osa', 'Os10g0523700' => 'osa', 'Peaxi162Scf00002g00514' => 'pax', 'Peaxi162Scf00047g01817' => 'pax', 'Peaxi162Scf00114g00001' => 'pax', 'Peaxi162Scf00147g00613' => 'pax', 'Peaxi162Scf00389g00425' => 'pax', 'PGR042G1139' => 'pgr', 'PGR042G3273' => 'pgr', 'PGR102G2180' => 'pgr', 'PGR119G0234' => 'pgr', 'PGR119G0668' => 'pgr', 'PGSC0003DMG400007122' => 'stu', 'PGSC0003DMG400016478' => 'stu', 'PGSC0003DMG400025374' => 'stu', 'PGSC0003DMG400026536' => 'stu', 'Phvul.003G079600' => 'pvu', 'Phvul.005G115600' => 'pvu', 'Phvul.005G127100' => 'pvu', 'Phvul.006G149500' => 'pvu', 'Phvul.006G149600' => 'pvu', 'Phvul.011G071800' => 'pvu', 'Phvul.011G090400' => 'pvu', 'Potri.004G013400' => 'ptr', 'Potri.004G188100' => 'ptr', 'Potri.008G195500' => 'ptr', 'Potri.009G148800' => 'ptr', 'Potri.011G004700' => 'ptr', 'Pp3c17_22810' => 'ppa', 'Pp3c18_4480' => 'ppa', 'Pp3c19_13030' => 'ppa', 'Pp3c1_33620' => 'ppa', 'Pp3c2_9380' => 'ppa', 'PRCOL_00001023' => 'pco', 'Prupe.3G216300' => 'ppe', 'Prupe.4G019500' => 'ppe', 'Prupe.6G092500' => 'ppe', 'Prupe.6G119200' => 'ppe', 'Psat0s1945g0080' => 'psa', 'Psat0s4167g0040' => 'psa', 'Psat1g185800' => 'psa', 'Psat4g006440' => 'psa', 'Psat4g006480' => 'psa', 'Psat4g168120' => 'psa', 'Psat5g255680' => 'psa', 'Psat5g261760' => 'psa', 'Psat7g222120' => 'psa', 'PSO063G7252' => 'pso', 'PSO170G4778' => 'pso', 'PSO210G2249' => 'pso', 'PSO339G2411' => 'pso', 'PSO339G2457' => 'pso', 'PSO339G2854' => 'pso', 'PSO339G4288' => 'pso', 'PSO339G4615' => 'pso', 'PSO384G2796' => 'pso', 'PSO384G2940' => 'pso', 'PSO384G4227' => 'pso', 'PSO478G1425' => 'pso', 'PSO541G3863' => 'pso', 'PSO675G0507' => 'pso', 'PSO782G0338' => 'pso', 'PSO832G0644' => 'pso', 'QL01p013664' => 'qlo', 'QL01p036598' => 'qlo', 'QL05p072984' => 'qlo', 'QL08p005768' => 'qlo', 'QL08p032743' => 'qlo', 'QL93p0073_0439' => 'qlo', 'QL93p0073_0444' => 'qlo', 'RcHm_v2.0_Chr5g0002851' => 'rch', 'RcHm_v2.0_Chr5g0055201' => 'rch', 'RcHm_v2.0_Chr5g0061191' => 'rch', 'RcHm_v2.0_Chr7g0203231' => 'rch', 'Rhsim01G0208100' => 'rsi', 'Rhsim01G0208200' => 'rsi', 'Rhsim02G0106500' => 'rsi', 'Rhsim03G0107900' => 'rsi', 'Rhsim06G0163400' => 'rsi', 'Rhsim13G0105200' => 'rsi', 'Sabra04G0006300' => 'sbr', 'Sabra04G0127000' => 'sbr', 'Sabra08G0148700' => 'sbr', 'Sabra09G0117400' => 'sbr', 'SalBow1G3326' => 'sbo', 'SalBow3G3228' => 'sbo', 'SalBow6G1634' => 'sbo', 'SalBow6G3603' => 'sbo', 'SalBow6G5266' => 'sbo', 'SalBow7G2265' => 'sbo', 'SalBow8G0850' => 'sbo', 'SalBow8G2592' => 'sbo', 'Sc05g0009240' => 'sci', 'Sc12g0002300' => 'sci', 'Sc21g0000100' => 'sci', 'Sc21g0004720' => 'sci', 'Sed0002949' => 'sed', 'Sed0004114' => 'sed', 'Sed0004306' => 'sed', 'Sed0006172' => 'sed', 'Sed0008413' => 'sed', 'Sed0013809' => 'sed', 'Sed0019556' => 'sed', 'SEGI_03570' => 'sgi', 'SEGI_07859' => 'sgi', 'SEGI_15042' => 'sgi', 'SEGI_16263' => 'sgi', 'SEGI_16552' => 'sgi', 'SEGI_24331' => 'sgi', 'SEGI_27316' => 'sgi', 'SEGI_29521' => 'sgi', 'SEGI_41342' => 'sgi', 'SGA_v2.0_scaffold27G11617' => 'sas', 'SGA_v2.0_scaffold316G48428' => 'sas', 'SGA_v2.0_scaffold49G18261' => 'sas', 'SGA_v2.0_scaffold7G03831' => 'sas', 'SGA_v2.0_scaffold93G28359' => 'sas', 'SHI02210' => 'shi', 'SHI06028' => 'shi', 'SHI06321' => 'shi', 'SMO111G0012' => 'smo', 'SMO228G0080' => 'smo', 'SMO356G0756' => 'smo', 'Solyc02g080620.3' => 'sly', 'Solyc06g074530.1' => 'sly', 'Solyc11g066890.1' => 'sly', 'Solyc11g072520.3' => 'sly', 'Sopen02g025330' => 'spe', 'Sopen06g031000' => 'spe', 'Sopen09g008240' => 'spe', 'Sopen09g025210' => 'spe', 'Sopen11g026600' => 'spe', 'Sopen11g030170' => 'spe', 'Sp1g10420' => 'spa', 'Sp3g06570' => 'spa', 'Sp4g10660' => 'spa', 'Sp5g16460' => 'spa', 'Sp6g22710' => 'spa', 'TAR365G0112' => 'tar', 'TAR369G0717' => 'tar', 'TAR374G0976' => 'tar', 'TAR623G1128' => 'tar', 'TAR626G1937' => 'tar', 'TAR627G0123' => 'tar', 'TAR628G0305' => 'tar', 'TAR636G1176' => 'tar', 'TAR636G2442' => 'tar', 'THA.LOC104800556' => 'tha', 'THA.LOC104809501' => 'tha', 'THA.LOC104815126' => 'tha', 'THA.LOC104815732' => 'tha', 'THA.LOC104823528' => 'tha', 'Thecc.02G365600' => 'tca', 'Thecc.06G222300' => 'tca', 'Thecc.09G261800' => 'tca', 'Thecc.09G291400' => 'tca', 'Thhalv10003028m.g' => 'esa', 'Thhalv10007886m.g' => 'esa', 'Thhalv10016085m.g' => 'esa', 'Thhalv10016681m.g' => 'esa', 'Thhalv10020951m.g' => 'esa', 'TPR.G15598' => 'tpr', 'TPR.G29305' => 'tpr', 'TPR.G32395' => 'tpr', 'TPR.G36998' => 'tpr', 'TPR.G4227' => 'tpr', 'TWI18G1433' => 'twi', 'TWI31G0755' => 'twi', 'TWI38G0912' => 'twi', 'TWI75G1097' => 'twi', 'TWI75G1619' => 'twi', 'TWI79G1336' => 'twi', 'unitig_0.g943' => 'ugi', 'unitig_0.g944' => 'ugi', 'unitig_22.g6646' => 'ugi', 'unitig_37.g12681' => 'ugi', 'unitig_8.g3290' => 'ugi', 'vmacro03278' => 'vma', 'vmacro12197' => 'vma', 'vmacro14478' => 'vma', 'vmacro15787' => 'vma', 'vmacro15789' => 'vma', 'vmacro15790' => 'vma', 'vmacro15806' => 'vma', 'vmacro22907' => 'vma', 'vmacro22908' => 'vma', 'vmacro22909' => 'vma', 'vmacro23108' => 'vma', 'VMungo0540G0540' => 'vmu', 'VMungo0540G2468' => 'vmu', 'VMungo1080G0390' => 'vmu', 'VMungo1080G1165' => 'vmu', 'VMungo1127G0170' => 'vmu', 'VMungo1127G2099' => 'vmu', 'VMungo1215G3013' => 'vmu', 'Zm00001eb013110' => 'zma', 'Zm00001eb084260' => 'zma', 'Zm00001eb096110' => 'zma', 'Zm00001eb217510' => 'zma', 'Zm00001eb322550' => 'zma', 'Zm00001eb390770' => 'zma', 'Zm00001eb397170' => 'zma', 'Zm00001eb404610' => 'zma', 'Zm00001eb421790' => 'zma' ) $gf_id = 'HOM05D000911' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000911' ) $data_identifier = 'HOM05D000911' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 16, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 5, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 6, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 8, 'nnu' => (int) 16, 'oeu' => (int) 8, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 5, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 16, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421790' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000911', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27780' => 'bna', 'A03p35380' => 'bna', 'A04p21160' => 'bna', 'A05p40570' => 'bna', 'A06p26900' => 'bna', 'A08p33230' => 'bna', 'A09p65960' => 'bna', 'A10p18290' => 'bna', 'Aa31LG1G12990' => 'aar', 'Aa31LG1G2980' => 'aar', 'Aa31LG4G14320' => 'aar', 'Aa31LG7G11800' => 'aar', 'Aa31sc36G50' => 'aar', 'Aa31sc36G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3721' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5459' => 'aag', 'Actinidia03028' => 'ach', 'Actinidia03753' => 'ach', 'Actinidia04187' => 'ach', 'Actinidia05509' => 'ach', 'Actinidia24180' => 'ach', 'Actinidia26906' => 'ach', 'Actinidia37097' => 'ach', 'Actinidia38249' => 'ach', 'Ah.01g003470' => 'amhyb', 'Ah.01g004580' => 'amhyb', 'Ah.01g014850' => 'amhyb', 'Ah.01g016830' => 'amhyb', 'Ah.14g088000' => 'amhyb', 'AL1G22980' => 'aly', 'AL3G18990' => 'aly', 'AL4G22440' => 'aly', 'AL4G33180' => 'aly', 'AL5G22920' => 'aly', 'AL6G33660' => 'aly', 'AL8G20720' => 'aly', 'Aqoxy1G00935' => 'aox', 'Aqoxy1G02094' => 'aox', 'Aqoxy2G01239' => 'aox', 'Aqoxy4G01870' => 'aox', 'Aqoxy7G00450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.36ZVTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71EM27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5D6C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH3WRE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3NCM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RIM768' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YB5YRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z36GDV' => 'arhy', 'AT1G08250' => 'ath', 'AT1G11790' => 'ath', 'AT2G27820' => 'ath', 'AT3G07630' => 'ath', 'AT3G44720' => 'ath', 'AT5G22630' => 'ath', 'ATR0693G304' => 'atr', 'ATR0794G109' => 'atr', 'ATR0820G120' => 'atr', 'ATR1159G064' => 'atr', 'Atru.chr10.2239' => 'acertr', 'Atru.chr3.3371' => 'acertr', 'Atru.chr6.3202' => 'acertr', 'AUR62006499' => 'cqu', 'AUR62012718' => 'cqu', 'AUR62021938' => 'cqu', 'AUR62023932' => 'cqu', 'AUR62025034' => 'cqu', 'AUR62025035' => 'cqu', 'AUR62038307' => 'cqu', 'AUR62043466' => 'cqu', 'BcaB02g10748' => 'bca', 'BcaB03g13231' => 'bca', 'BcaB03g14689' => 'bca', 'BcaB05g22716' => 'bca', 'BcaB06g28172' => 'bca', 'BcaB08g36413' => 'bca', 'BcaC01g02186' => 'bca', 'BcaC01g04272' => 'bca', 'BcaC02g08080' => 'bca', 'BcaC02g08227' => 'bca', 'BcaC03g13901' => 'bca', 'BcaC04g19593' => 'bca', 'BcaC04g20874' => 'bca', 'BcaC05g29557' => 'bca', 'BcaC06g35505' => 'bca', 'BcaC07g41954' => 'bca', 'BcaC07g41955' => 'bca', 'BcaC07g41956' => 'bca', 'BcaC07g42519' => 'bca', 'BcaC07g42520' => 'bca', 'BcaC07g42523' => 'bca', 'BcaC07g42524' => 'bca', 'BcaC07g42525' => 'bca', 'BcaC08g47480' => 'bca', 'BcaC08g47481' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00530' => 'bna', 'BolC2t07178H' => 'bol', 'BolC3t16567H' => 'bol', 'BolC4t27234H' => 'bol', 'BolC5t29728H' => 'bol', 'BolC5t34622H' => 'bol', 'BolC6t40321H' => 'bol', 'BolC7t42028H' => 'bol', 'BolC8t49125H' => 'bol', 'BolC8t52538H' => 'bol', 'BolC8t52539H' => 'bol', 'BolC9t56681H' => 'bol', 'BolC9t58266H' => 'bol', 'BolSC21t60294H' => 'bol', 'BraA02t05670Z' => 'bra', 'BraA03t12716Z' => 'bra', 'BraA04t17685Z' => 'bra', 'BraA05t22788Z' => 'bra', 'BraA06t24032Z' => 'bra', 'BraA06t25625Z' => 'bra', 'BraA07t27930Z' => 'bra', 'BraA08t35242Z' => 'bra', 'BraA09t38609Z' => 'bra', 'BraA10t43905Z' => 'bra', 'C02p11060' => 'bna', 'C03p42990' => 'bna', 'C03p67310' => 'bna', 'C04p56990' => 'bna', 'C04p58660' => 'bna', 'C05p09890' => 'bna', 'C05p59680' => 'bna', 'C06p19830' => 'bna', 'C06p53040' => 'bna', 'C07p15230' => 'bna', 'C08p50070' => 'bna', 'C08p50090' => 'bna', 'C09p38330' => 'bna', 'C09p53940' => 'bna', 'CAN.G1014.1' => 'can', 'CAN.G644.30' => 'can', 'CAN.G84.47' => 'can', 'CAN.G919.8' => 'can', 'CANSAT54G0113' => 'cansat', 'CANSAT54G1286' => 'cansat', 'CANSAT64G1020' => 'cansat', 'CARHR008080' => 'chi', 'CARHR008090' => 'chi', 'CARHR012130' => 'chi', 'CARHR038390' => 'chi', 'CARHR082330' => 'chi', 'CARHR120520' => 'chi', 'CARHR151470' => 'chi', 'CARHR190950' => 'chi', 'Carub.0001s0760' => 'cru', 'Carub.0001s1146' => 'cru', 'Carub.0003s0721' => 'cru', 'Carub.0004s0858' => 'cru', 'Carub.0005s1040' => 'cru', 'Carub.0006s2035' => 'cru', 'Carub.0015s0005' => 'cru', 'Ca_01607_v3' => 'car', 'Ca_01677_v3' => 'car', 'Ca_06087_v3' => 'car', 'Ca_19238_v3' => 'car', 'Ca_19373_v3' => 'car', 'Ca_21079_v3' => 'car', 'CBR_g54016' => 'cbr', 'CBR_g54018' => 'cbr', 'CBR_g54020' => 'cbr', 'Cc01_g09780' => 'ccan', 'Cc01_g11680' => 'ccan', 'Cc02_g15610' => 'ccan', 'Cc05_g04350' => 'ccan', 'Cc09_g01580' => 'ccan', 'CDE01G0795' => 'cde', 'CDE02G2024' => 'cde', 'CDE02G2260' => 'cde', 'CDE02G4561' => 'cde', 'CDE05G2733' => 'cde', 'CDE05G3422' => 'cde', 'CDE06G2003' => 'cde', 'CDE08G0576' => 'cde', 'CDE09G0048' => 'cde', 'CDE11G0805' => 'cde', 'Cfa003644' => 'cfa', 'Cfa006290' => 'cfa', 'Cfa010080' => 'cfa', 'Cfa011376' => 'cfa', 'Cfa011576' => 'cfa', 'Cfa011577' => 'cfa', 'Cfa014389' => 'cfa', 'Ciclev10006044m.g' => 'ccl', 'Ciclev10006954m.g' => 'ccl', 'Ciclev10015131m.g' => 'ccl', 'Ciclev10015580m.g' => 'ccl', 'Ciclev10028359m.g' => 'ccl', 'Ciclev10028573m.g' => 'ccl', 'CiPaw.03G159300' => 'cil', 'CiPaw.04G115100' => 'cil', 'CiPaw.09G092800' => 'cil', 'CiPaw.10G071800' => 'cil', 'CiPaw.13G105800' => 'cil', 'CiPaw.13G141000' => 'cil', 'CiPaw.14G103400' => 'cil', 'ClCG01G012700' => 'cla', 'ClCG01G012720' => 'cla', 'ClCG01G021920' => 'cla', 'ClCG02G008870' => 'cla', 'ClCG02G020840' => 'cla', 'ClCG02G021930' => 'cla', 'COL.COLO4_19302' => 'col', 'COL.COLO4_25262' => 'col', 'COL.COLO4_31788' => 'col', 'Cpa.g.c34684' => 'cpa', 'Cpa.g.c36520.1' => 'cpa', 'Cpa.g.c45626' => 'cpa', 'Cpa.g.sc121.17' => 'cpa', 'Cpa.g.sc13.22' => 'cpa', 'Cpa.g.sc87.88' => 'cpa', 'Cre06.g261800' => 'cre', 'CsaV3_1G014500' => 'csa', 'CsaV3_1G014510' => 'csa', 'CsaV3_2G034880' => 'csa', 'CsaV3_6G014760' => 'csa', 'CsaV3_6G021500' => 'csa', 'CsaV3_6G048980' => 'csa', 'CSS0002511' => 'camsi', 'CSS0007556' => 'camsi', 'CSS0008532' => 'camsi', 'CSS0009709' => 'camsi', 'CSS0010486' => 'camsi', 'CSS0016768' => 'camsi', 'CSS0023512' => 'camsi', 'CSS0025341' => 'camsi', 'CSS0027999' => 'camsi', 'CSS0028944' => 'camsi', 'CSS0032292' => 'camsi', 'CSS0032464' => 'camsi', 'CSS0037153' => 'camsi', 'CSS0039256' => 'camsi', 'CSS0048392' => 'camsi', 'CSS0050458' => 'camsi', 'DCAR_004224' => 'dca', 'DCAR_006147' => 'dca', 'DCAR_006465' => 'dca', 'DCAR_008159' => 'dca', 'DCAR_012164' => 'dca', 'DCAR_019764' => 'dca', 'Dinv05418' => 'din', 'Dinv10839' => 'din', 'Dinv12521' => 'din', 'Dinv13900' => 'din', 'Dinv29426' => 'din', 'Duzib150G0263' => 'dzi', 'Duzib168G1178' => 'dzi', 'Duzib168G1924' => 'dzi', 'Duzib170G0299' => 'dzi', 'Duzib170G0813' => 'dzi', 'Duzib235G1128' => 'dzi', 'Duzib248G1060' => 'dzi', 'ECA232G1910' => 'eca', 'ECA233G4621' => 'eca', 'ECA238G1216' => 'eca', 'ECA238G1784' => 'eca', 'ECA248G1242' => 'eca', 'EL10Ac8g20071' => 'bvu', 'EL10Ac9g21086' => 'bvu', 'EL10Ac9g22407' => 'bvu', 'EL10Ac9g22412' => 'bvu', 'Eucgr.A01119' => 'egr', 'Eucgr.E04043' => 'egr', 'Eucgr.J00428' => 'egr', 'Eucgr.J00958' => 'egr', 'FAN11G3091' => 'fan', 'FAN11G3651' => 'fan', 'FAN16G2566' => 'fan', 'FAN21G3155' => 'fan', 'FAN21G3400' => 'fan', 'FAN21G3543' => 'fan', 'FAN25G0234' => 'fan', 'FAN25G1422' => 'fan', 'FAN25G3392' => 'fan', 'FvH4_3g01940' => 'fve', 'FvH4_3g29870' => 'fve', 'FvH4_3g33680' => 'fve', 'Glyma.09G004200' => 'gma', 'Glyma.11G151288' => 'gma', 'Glyma.11G189100' => 'gma', 'Glyma.12G072500' => 'gma', 'Glyma.12G085500' => 'gma', 'Glyma.12G181800' => 'gma', 'Glyma.12G193000' => 'gma', 'Glyma.13G309300' => 'gma', 'Glyma.13G319000' => 'gma', 'Glyma.17G012600' => 'gma', 'Gohir.A06G148600' => 'ghi', 'Gohir.A07G115800' => 'ghi', 'Gohir.A08G003600' => 'ghi', 'Gohir.A09G093300' => 'ghi', 'Gohir.A09G105400' => 'ghi', 'Gohir.A09G105500' => 'ghi', 'Gohir.D06G154600' => 'ghi', 'Gohir.D07G120200' => 'ghi', 'Gohir.D08G013900' => 'ghi', 'Gohir.D09G093100' => 'ghi', 'Gohir.D09G102200' => 'ghi', 'Gohir.D09G102300' => 'ghi', 'Gorai.001G129400' => 'gra', 'Gorai.004G008200' => 'gra', 'Gorai.006G109800' => 'gra', 'Gorai.006G119500' => 'gra', 'Gorai.006G121300' => 'gra', 'Gorai.010G180700' => 'gra', 'GSVIVG01012716001' => 'vvi', 'GSVIVG01025118001' => 'vvi', 'GSVIVG01030439001' => 'vvi', 'GSVIVG01031397001' => 'vvi', 'HanXRQChr01g0004201' => 'han', 'HanXRQChr02g0054941' => 'han', 'HanXRQChr05g0141811' => 'han', 'HanXRQChr07g0197751' => 'han', 'HanXRQChr11g0346691' => 'han', 'HanXRQChr13g0396971' => 'han', 'HanXRQChr14g0432951' => 'han', 'HanXRQChr14g0452001' => 'han', 'HanXRQChr15g0496681' => 'han', 'HanXRQChr17g0557491' => 'han', 'HanXRQChr17g0557501' => 'han', 'Haze_06809' => 'cav', 'Haze_12852' => 'cav', 'Haze_15850' => 'cav', 'Haze_23446' => 'cav', 'Haze_23942' => 'cav', 'Haze_23943' => 'cav', 'Hma1.2p1_0091F.1_g046450' => 'hma', 'Hma1.2p1_0128F.1_g059910' => 'hma', 'Hma1.2p1_0249F.1_g102260' => 'hma', 'Hma1.2p1_0453F.1_g156190' => 'hma', 'Hma1.2p1_0695F.1_g204380' => 'hma', 'Hma1.2p1_0749F.1_g212650' => 'hma', 'Hma1.2p1_2156F.1_g315420' => 'hma', 'Hma1.2p1_2686F.1_g326940' => 'hma', 'HPP92_006428' => 'vpl', 'HPP92_012069' => 'vpl', 'HPP92_014129' => 'vpl', 'HPP92_014133' => 'vpl', 'HPP92_017315' => 'vpl', 'HPP92_026445' => 'vpl', 'HPP92_026446' => 'vpl', 'Hund00774' => 'sun', 'Hund07682' => 'sun', 'Hund21413' => 'sun', 'Hund23462' => 'sun', 'Hund23463' => 'sun', 'Lalb_Chr03g0027911' => 'lal', 'Lalb_Chr13g0304271' => 'lal', 'Lalb_Chr19g0137471' => 'lal', 'Lalb_Chr22g0350651' => 'lal', 'Lalb_Chr24g0395151' => 'lal', 'Lj1A1231T40' => 'lonja', 'Lj1A221T48' => 'lonja', 'Lj1C924T12' => 'lonja', 'Lj2C993G6' => 'lonja', 'Lj3g0005790' => 'lja', 'Lj3g0015432' => 'lja', 'Lj3g0017722' => 'lja', 'Lj3g0018497' => 'lja', 'Lj4g0025071' => 'lja', 'Lsat_1_v5_gn_1_129680' => 'lsa', 'Lsat_1_v5_gn_2_25321' => 'lsa', 'Lsat_1_v5_gn_2_95461' => 'lsa', 'Lsat_1_v5_gn_4_159620' => 'lsa', 'Lsat_1_v5_gn_6_41301' => 'lsa', 'Lsat_1_v5_gn_6_74660' => 'lsa', 'Lsat_1_v5_gn_7_11520' => 'lsa', 'Lsat_1_v5_gn_9_67680' => 'lsa', 'Manes.04G008300' => 'mes', 'Manes.04G008400' => 'mes', 'Manes.04G026500' => 'mes', 'Manes.10G135300' => 'mes', 'Manes.11G157300' => 'mes', 'Manes.12G074000' => 'mes', 'Manes.16G006200' => 'mes', 'Manes.17G026400' => 'mes', 'Mapoly0024s0086' => 'mpo', 'Mapoly0024s0087' => 'mpo', 'Mapoly0071s0057' => 'mpo', 'Mapoly0204s0012' => 'mpo', 'MBI04_g37681_MAGBIO' => 'mbi', 'MBI05_g17779_MAGBIO' => 'mbi', 'MBI12_g31184_MAGBIO' => 'mbi', 'MBI17_g11083_MAGBIO' => 'mbi', 'MBI18_g03883_MAGBIO' => 'mbi', 'MBI18_g28940_MAGBIO' => 'mbi', 'MCO01G690' => 'mco', 'MD03G1109900' => 'mdo', 'MD03G1134800' => 'mdo', 'MD05G1348000' => 'mdo', 'MD10G1322400' => 'mdo', 'MD11G1123300' => 'mdo', 'MD11G1157600' => 'mdo', 'Medtr2g084875' => 'mtr', 'Medtr2g088130' => 'mtr', 'Medtr4g055310' => 'mtr', 'Medtr4g061070' => 'mtr', 'Medtr4g132250' => 'mtr', 'MELO3C004795.2' => 'cme', 'MELO3C004797.2' => 'cme', 'MELO3C007396.2' => 'cme', 'MELO3C019277.2' => 'cme', 'MELO3C021449.2' => 'cme', 'MELO3C025736.2' => 'cme', 'Migut.D02175' => 'egut', 'Migut.H01573' => 'egut', 'Migut.M01327' => 'egut', 'Migut.N02513' => 'egut', 'MSTRG.14638' => 'ama', 'MSTRG.18632' => 'ama', 'MSTRG.7203' => 'ama', 'Nitab4.5_0000533g0140' => 'nta', 'Nitab4.5_0000888g0150' => 'nta', 'Nitab4.5_0001453g0040' => 'nta', 'Nitab4.5_0002827g0090' => 'nta', 'Nitab4.5_0003082g0040' => 'nta', 'Nitab4.5_0007799g0040' => 'nta', 'Nitab4.5_0008983g0010' => 'nta', 'Nitab4.5_0009017g0020' => 'nta', 'Nn1g02132' => 'nnu', 'Nn1g03492' => 'nnu', 'Nn1g03493' => 'nnu', 'Nn1g03494' => 'nnu', 'Nn1g07164' => 'nnu', 'Nn1g07291' => 'nnu', 'Nn2g10655' => 'nnu', 'Nn2g11652' => 'nnu', 'Nn2g14008' => 'nnu', 'Nn3g17476' => 'nnu', 'Nn3g17477' => 'nnu', 'Nn4g22370' => 'nnu', 'Nn4g25255' => 'nnu', 'Nn5g27755' => 'nnu', 'Nn6g34260' => 'nnu', 'Nn6g35041' => 'nnu', 'Oeu005924.1' => 'oeu', 'Oeu008383.1' => 'oeu', 'Oeu014928.1' => 'oeu', 'Oeu019889.1' => 'oeu', 'Oeu022271.1' => 'oeu', 'Oeu025271.1' => 'oeu', 'Oeu036302.1' => 'oeu', 'Oeu044100.1' => 'oeu', 'Os01g0528300' => 'osa', 'Os03g0286200' => 'osa', 'Os04g0406600' => 'osa', 'Os07g0512000' => 'osa', 'Os07g0694600' => 'osa', 'Os08g0411000' => 'osa', 'Os09g0565700' => 'osa', 'Os09g0566050' => 'osa', 'Os10g0523700' => 'osa', 'Peaxi162Scf00002g00514' => 'pax', 'Peaxi162Scf00047g01817' => 'pax', 'Peaxi162Scf00114g00001' => 'pax', 'Peaxi162Scf00147g00613' => 'pax', 'Peaxi162Scf00389g00425' => 'pax', 'PGR042G1139' => 'pgr', 'PGR042G3273' => 'pgr', 'PGR102G2180' => 'pgr', 'PGR119G0234' => 'pgr', 'PGR119G0668' => 'pgr', 'PGSC0003DMG400007122' => 'stu', 'PGSC0003DMG400016478' => 'stu', 'PGSC0003DMG400025374' => 'stu', 'PGSC0003DMG400026536' => 'stu', 'Phvul.003G079600' => 'pvu', 'Phvul.005G115600' => 'pvu', 'Phvul.005G127100' => 'pvu', 'Phvul.006G149500' => 'pvu', 'Phvul.006G149600' => 'pvu', 'Phvul.011G071800' => 'pvu', 'Phvul.011G090400' => 'pvu', 'Potri.004G013400' => 'ptr', 'Potri.004G188100' => 'ptr', 'Potri.008G195500' => 'ptr', 'Potri.009G148800' => 'ptr', 'Potri.011G004700' => 'ptr', 'Pp3c17_22810' => 'ppa', 'Pp3c18_4480' => 'ppa', 'Pp3c19_13030' => 'ppa', 'Pp3c1_33620' => 'ppa', 'Pp3c2_9380' => 'ppa', 'PRCOL_00001023' => 'pco', 'Prupe.3G216300' => 'ppe', 'Prupe.4G019500' => 'ppe', 'Prupe.6G092500' => 'ppe', 'Prupe.6G119200' => 'ppe', 'Psat0s1945g0080' => 'psa', 'Psat0s4167g0040' => 'psa', 'Psat1g185800' => 'psa', 'Psat4g006440' => 'psa', 'Psat4g006480' => 'psa', 'Psat4g168120' => 'psa', 'Psat5g255680' => 'psa', 'Psat5g261760' => 'psa', 'Psat7g222120' => 'psa', 'PSO063G7252' => 'pso', 'PSO170G4778' => 'pso', 'PSO210G2249' => 'pso', 'PSO339G2411' => 'pso', 'PSO339G2457' => 'pso', 'PSO339G2854' => 'pso', 'PSO339G4288' => 'pso', 'PSO339G4615' => 'pso', 'PSO384G2796' => 'pso', 'PSO384G2940' => 'pso', 'PSO384G4227' => 'pso', 'PSO478G1425' => 'pso', 'PSO541G3863' => 'pso', 'PSO675G0507' => 'pso', 'PSO782G0338' => 'pso', 'PSO832G0644' => 'pso', 'QL01p013664' => 'qlo', 'QL01p036598' => 'qlo', 'QL05p072984' => 'qlo', 'QL08p005768' => 'qlo', 'QL08p032743' => 'qlo', 'QL93p0073_0439' => 'qlo', 'QL93p0073_0444' => 'qlo', 'RcHm_v2.0_Chr5g0002851' => 'rch', 'RcHm_v2.0_Chr5g0055201' => 'rch', 'RcHm_v2.0_Chr5g0061191' => 'rch', 'RcHm_v2.0_Chr7g0203231' => 'rch', 'Rhsim01G0208100' => 'rsi', 'Rhsim01G0208200' => 'rsi', 'Rhsim02G0106500' => 'rsi', 'Rhsim03G0107900' => 'rsi', 'Rhsim06G0163400' => 'rsi', 'Rhsim13G0105200' => 'rsi', 'Sabra04G0006300' => 'sbr', 'Sabra04G0127000' => 'sbr', 'Sabra08G0148700' => 'sbr', 'Sabra09G0117400' => 'sbr', 'SalBow1G3326' => 'sbo', 'SalBow3G3228' => 'sbo', 'SalBow6G1634' => 'sbo', 'SalBow6G3603' => 'sbo', 'SalBow6G5266' => 'sbo', 'SalBow7G2265' => 'sbo', 'SalBow8G0850' => 'sbo', 'SalBow8G2592' => 'sbo', 'Sc05g0009240' => 'sci', 'Sc12g0002300' => 'sci', 'Sc21g0000100' => 'sci', 'Sc21g0004720' => 'sci', 'Sed0002949' => 'sed', 'Sed0004114' => 'sed', 'Sed0004306' => 'sed', 'Sed0006172' => 'sed', 'Sed0008413' => 'sed', 'Sed0013809' => 'sed', 'Sed0019556' => 'sed', 'SEGI_03570' => 'sgi', 'SEGI_07859' => 'sgi', 'SEGI_15042' => 'sgi', 'SEGI_16263' => 'sgi', 'SEGI_16552' => 'sgi', 'SEGI_24331' => 'sgi', 'SEGI_27316' => 'sgi', 'SEGI_29521' => 'sgi', 'SEGI_41342' => 'sgi', 'SGA_v2.0_scaffold27G11617' => 'sas', 'SGA_v2.0_scaffold316G48428' => 'sas', 'SGA_v2.0_scaffold49G18261' => 'sas', 'SGA_v2.0_scaffold7G03831' => 'sas', 'SGA_v2.0_scaffold93G28359' => 'sas', 'SHI02210' => 'shi', 'SHI06028' => 'shi', 'SHI06321' => 'shi', 'SMO111G0012' => 'smo', 'SMO228G0080' => 'smo', 'SMO356G0756' => 'smo', 'Solyc02g080620.3' => 'sly', 'Solyc06g074530.1' => 'sly', 'Solyc11g066890.1' => 'sly', 'Solyc11g072520.3' => 'sly', 'Sopen02g025330' => 'spe', 'Sopen06g031000' => 'spe', 'Sopen09g008240' => 'spe', 'Sopen09g025210' => 'spe', 'Sopen11g026600' => 'spe', 'Sopen11g030170' => 'spe', 'Sp1g10420' => 'spa', 'Sp3g06570' => 'spa', 'Sp4g10660' => 'spa', 'Sp5g16460' => 'spa', 'Sp6g22710' => 'spa', 'TAR365G0112' => 'tar', 'TAR369G0717' => 'tar', 'TAR374G0976' => 'tar', 'TAR623G1128' => 'tar', 'TAR626G1937' => 'tar', 'TAR627G0123' => 'tar', 'TAR628G0305' => 'tar', 'TAR636G1176' => 'tar', 'TAR636G2442' => 'tar', 'THA.LOC104800556' => 'tha', 'THA.LOC104809501' => 'tha', 'THA.LOC104815126' => 'tha', 'THA.LOC104815732' => 'tha', 'THA.LOC104823528' => 'tha', 'Thecc.02G365600' => 'tca', 'Thecc.06G222300' => 'tca', 'Thecc.09G261800' => 'tca', 'Thecc.09G291400' => 'tca', 'Thhalv10003028m.g' => 'esa', 'Thhalv10007886m.g' => 'esa', 'Thhalv10016085m.g' => 'esa', 'Thhalv10016681m.g' => 'esa', 'Thhalv10020951m.g' => 'esa', 'TPR.G15598' => 'tpr', 'TPR.G29305' => 'tpr', 'TPR.G32395' => 'tpr', 'TPR.G36998' => 'tpr', 'TPR.G4227' => 'tpr', 'TWI18G1433' => 'twi', 'TWI31G0755' => 'twi', 'TWI38G0912' => 'twi', 'TWI75G1097' => 'twi', 'TWI75G1619' => 'twi', 'TWI79G1336' => 'twi', 'unitig_0.g943' => 'ugi', 'unitig_0.g944' => 'ugi', 'unitig_22.g6646' => 'ugi', 'unitig_37.g12681' => 'ugi', 'unitig_8.g3290' => 'ugi', 'vmacro03278' => 'vma', 'vmacro12197' => 'vma', 'vmacro14478' => 'vma', 'vmacro15787' => 'vma', 'vmacro15789' => 'vma', 'vmacro15790' => 'vma', 'vmacro15806' => 'vma', 'vmacro22907' => 'vma', 'vmacro22908' => 'vma', 'vmacro22909' => 'vma', 'vmacro23108' => 'vma', 'VMungo0540G0540' => 'vmu', 'VMungo0540G2468' => 'vmu', 'VMungo1080G0390' => 'vmu', 'VMungo1080G1165' => 'vmu', 'VMungo1127G0170' => 'vmu', 'VMungo1127G2099' => 'vmu', 'VMungo1215G3013' => 'vmu', 'Zm00001eb013110' => 'zma', 'Zm00001eb084260' => 'zma', 'Zm00001eb096110' => 'zma', 'Zm00001eb217510' => 'zma', 'Zm00001eb322550' => 'zma', 'Zm00001eb390770' => 'zma', 'Zm00001eb397170' => 'zma', 'Zm00001eb404610' => 'zma', 'Zm00001eb421790' => 'zma' ), 'gf_id' => 'HOM05D000911', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000911' ), 'data_identifier' => 'HOM05D000911', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000911', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27780' => 'bna', 'A03p35380' => 'bna', 'A04p21160' => 'bna', 'A05p40570' => 'bna', 'A06p26900' => 'bna', 'A08p33230' => 'bna', 'A09p65960' => 'bna', 'A10p18290' => 'bna', 'Aa31LG1G12990' => 'aar', 'Aa31LG1G2980' => 'aar', 'Aa31LG4G14320' => 'aar', 'Aa31LG7G11800' => 'aar', 'Aa31sc36G50' => 'aar', 'Aa31sc36G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3721' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5459' => 'aag', 'Actinidia03028' => 'ach', 'Actinidia03753' => 'ach', 'Actinidia04187' => 'ach', 'Actinidia05509' => 'ach', 'Actinidia24180' => 'ach', 'Actinidia26906' => 'ach', 'Actinidia37097' => 'ach', 'Actinidia38249' => 'ach', 'Ah.01g003470' => 'amhyb', 'Ah.01g004580' => 'amhyb', 'Ah.01g014850' => 'amhyb', 'Ah.01g016830' => 'amhyb', 'Ah.14g088000' => 'amhyb', 'AL1G22980' => 'aly', 'AL3G18990' => 'aly', 'AL4G22440' => 'aly', 'AL4G33180' => 'aly', 'AL5G22920' => 'aly', 'AL6G33660' => 'aly', 'AL8G20720' => 'aly', 'Aqoxy1G00935' => 'aox', 'Aqoxy1G02094' => 'aox', 'Aqoxy2G01239' => 'aox', 'Aqoxy4G01870' => 'aox', 'Aqoxy7G00450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.36ZVTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71EM27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5D6C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH3WRE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3NCM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RIM768' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YB5YRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z36GDV' => 'arhy', 'AT1G08250' => 'ath', 'AT1G11790' => 'ath', 'AT2G27820' => 'ath', 'AT3G07630' => 'ath', 'AT3G44720' => 'ath', 'AT5G22630' => 'ath', 'ATR0693G304' => 'atr', 'ATR0794G109' => 'atr', 'ATR0820G120' => 'atr', 'ATR1159G064' => 'atr', 'Atru.chr10.2239' => 'acertr', 'Atru.chr3.3371' => 'acertr', 'Atru.chr6.3202' => 'acertr', 'AUR62006499' => 'cqu', 'AUR62012718' => 'cqu', 'AUR62021938' => 'cqu', 'AUR62023932' => 'cqu', 'AUR62025034' => 'cqu', 'AUR62025035' => 'cqu', 'AUR62038307' => 'cqu', 'AUR62043466' => 'cqu', 'BcaB02g10748' => 'bca', 'BcaB03g13231' => 'bca', 'BcaB03g14689' => 'bca', 'BcaB05g22716' => 'bca', 'BcaB06g28172' => 'bca', 'BcaB08g36413' => 'bca', 'BcaC01g02186' => 'bca', 'BcaC01g04272' => 'bca', 'BcaC02g08080' => 'bca', 'BcaC02g08227' => 'bca', 'BcaC03g13901' => 'bca', 'BcaC04g19593' => 'bca', 'BcaC04g20874' => 'bca', 'BcaC05g29557' => 'bca', 'BcaC06g35505' => 'bca', 'BcaC07g41954' => 'bca', 'BcaC07g41955' => 'bca', 'BcaC07g41956' => 'bca', 'BcaC07g42519' => 'bca', 'BcaC07g42520' => 'bca', 'BcaC07g42523' => 'bca', 'BcaC07g42524' => 'bca', 'BcaC07g42525' => 'bca', 'BcaC08g47480' => 'bca', 'BcaC08g47481' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00530' => 'bna', 'BolC2t07178H' => 'bol', 'BolC3t16567H' => 'bol', 'BolC4t27234H' => 'bol', 'BolC5t29728H' => 'bol', 'BolC5t34622H' => 'bol', 'BolC6t40321H' => 'bol', 'BolC7t42028H' => 'bol', 'BolC8t49125H' => 'bol', 'BolC8t52538H' => 'bol', 'BolC8t52539H' => 'bol', 'BolC9t56681H' => 'bol', 'BolC9t58266H' => 'bol', 'BolSC21t60294H' => 'bol', 'BraA02t05670Z' => 'bra', 'BraA03t12716Z' => 'bra', 'BraA04t17685Z' => 'bra', 'BraA05t22788Z' => 'bra', 'BraA06t24032Z' => 'bra', 'BraA06t25625Z' => 'bra', 'BraA07t27930Z' => 'bra', 'BraA08t35242Z' => 'bra', 'BraA09t38609Z' => 'bra', 'BraA10t43905Z' => 'bra', 'C02p11060' => 'bna', 'C03p42990' => 'bna', 'C03p67310' => 'bna', 'C04p56990' => 'bna', 'C04p58660' => 'bna', 'C05p09890' => 'bna', 'C05p59680' => 'bna', 'C06p19830' => 'bna', 'C06p53040' => 'bna', 'C07p15230' => 'bna', 'C08p50070' => 'bna', 'C08p50090' => 'bna', 'C09p38330' => 'bna', 'C09p53940' => 'bna', 'CAN.G1014.1' => 'can', 'CAN.G644.30' => 'can', 'CAN.G84.47' => 'can', 'CAN.G919.8' => 'can', 'CANSAT54G0113' => 'cansat', 'CANSAT54G1286' => 'cansat', 'CANSAT64G1020' => 'cansat', 'CARHR008080' => 'chi', 'CARHR008090' => 'chi', 'CARHR012130' => 'chi', 'CARHR038390' => 'chi', 'CARHR082330' => 'chi', 'CARHR120520' => 'chi', 'CARHR151470' => 'chi', 'CARHR190950' => 'chi', 'Carub.0001s0760' => 'cru', 'Carub.0001s1146' => 'cru', 'Carub.0003s0721' => 'cru', 'Carub.0004s0858' => 'cru', 'Carub.0005s1040' => 'cru', 'Carub.0006s2035' => 'cru', 'Carub.0015s0005' => 'cru', 'Ca_01607_v3' => 'car', 'Ca_01677_v3' => 'car', 'Ca_06087_v3' => 'car', 'Ca_19238_v3' => 'car', 'Ca_19373_v3' => 'car', 'Ca_21079_v3' => 'car', 'CBR_g54016' => 'cbr', 'CBR_g54018' => 'cbr', 'CBR_g54020' => 'cbr', 'Cc01_g09780' => 'ccan', 'Cc01_g11680' => 'ccan', 'Cc02_g15610' => 'ccan', 'Cc05_g04350' => 'ccan', 'Cc09_g01580' => 'ccan', 'CDE01G0795' => 'cde', 'CDE02G2024' => 'cde', 'CDE02G2260' => 'cde', 'CDE02G4561' => 'cde', 'CDE05G2733' => 'cde', 'CDE05G3422' => 'cde', 'CDE06G2003' => 'cde', 'CDE08G0576' => 'cde', 'CDE09G0048' => 'cde', 'CDE11G0805' => 'cde', 'Cfa003644' => 'cfa', 'Cfa006290' => 'cfa', 'Cfa010080' => 'cfa', 'Cfa011376' => 'cfa', 'Cfa011576' => 'cfa', 'Cfa011577' => 'cfa', 'Cfa014389' => 'cfa', 'Ciclev10006044m.g' => 'ccl', 'Ciclev10006954m.g' => 'ccl', 'Ciclev10015131m.g' => 'ccl', 'Ciclev10015580m.g' => 'ccl', 'Ciclev10028359m.g' => 'ccl', 'Ciclev10028573m.g' => 'ccl', 'CiPaw.03G159300' => 'cil', 'CiPaw.04G115100' => 'cil', 'CiPaw.09G092800' => 'cil', 'CiPaw.10G071800' => 'cil', 'CiPaw.13G105800' => 'cil', 'CiPaw.13G141000' => 'cil', 'CiPaw.14G103400' => 'cil', 'ClCG01G012700' => 'cla', 'ClCG01G012720' => 'cla', 'ClCG01G021920' => 'cla', 'ClCG02G008870' => 'cla', 'ClCG02G020840' => 'cla', 'ClCG02G021930' => 'cla', 'COL.COLO4_19302' => 'col', 'COL.COLO4_25262' => 'col', 'COL.COLO4_31788' => 'col', 'Cpa.g.c34684' => 'cpa', 'Cpa.g.c36520.1' => 'cpa', 'Cpa.g.c45626' => 'cpa', 'Cpa.g.sc121.17' => 'cpa', 'Cpa.g.sc13.22' => 'cpa', 'Cpa.g.sc87.88' => 'cpa', 'Cre06.g261800' => 'cre', 'CsaV3_1G014500' => 'csa', 'CsaV3_1G014510' => 'csa', 'CsaV3_2G034880' => 'csa', 'CsaV3_6G014760' => 'csa', 'CsaV3_6G021500' => 'csa', 'CsaV3_6G048980' => 'csa', 'CSS0002511' => 'camsi', 'CSS0007556' => 'camsi', 'CSS0008532' => 'camsi', 'CSS0009709' => 'camsi', 'CSS0010486' => 'camsi', 'CSS0016768' => 'camsi', 'CSS0023512' => 'camsi', 'CSS0025341' => 'camsi', 'CSS0027999' => 'camsi', 'CSS0028944' => 'camsi', 'CSS0032292' => 'camsi', 'CSS0032464' => 'camsi', 'CSS0037153' => 'camsi', 'CSS0039256' => 'camsi', 'CSS0048392' => 'camsi', 'CSS0050458' => 'camsi', 'DCAR_004224' => 'dca', 'DCAR_006147' => 'dca', 'DCAR_006465' => 'dca', 'DCAR_008159' => 'dca', 'DCAR_012164' => 'dca', 'DCAR_019764' => 'dca', 'Dinv05418' => 'din', 'Dinv10839' => 'din', 'Dinv12521' => 'din', 'Dinv13900' => 'din', 'Dinv29426' => 'din', 'Duzib150G0263' => 'dzi', 'Duzib168G1178' => 'dzi', 'Duzib168G1924' => 'dzi', 'Duzib170G0299' => 'dzi', 'Duzib170G0813' => 'dzi', 'Duzib235G1128' => 'dzi', 'Duzib248G1060' => 'dzi', 'ECA232G1910' => 'eca', 'ECA233G4621' => 'eca', 'ECA238G1216' => 'eca', 'ECA238G1784' => 'eca', 'ECA248G1242' => 'eca', 'EL10Ac8g20071' => 'bvu', 'EL10Ac9g21086' => 'bvu', 'EL10Ac9g22407' => 'bvu', 'EL10Ac9g22412' => 'bvu', 'Eucgr.A01119' => 'egr', 'Eucgr.E04043' => 'egr', 'Eucgr.J00428' => 'egr', 'Eucgr.J00958' => 'egr', 'FAN11G3091' => 'fan', 'FAN11G3651' => 'fan', 'FAN16G2566' => 'fan', 'FAN21G3155' => 'fan', 'FAN21G3400' => 'fan', 'FAN21G3543' => 'fan', 'FAN25G0234' => 'fan', 'FAN25G1422' => 'fan', 'FAN25G3392' => 'fan', 'FvH4_3g01940' => 'fve', 'FvH4_3g29870' => 'fve', 'FvH4_3g33680' => 'fve', 'Glyma.09G004200' => 'gma', 'Glyma.11G151288' => 'gma', 'Glyma.11G189100' => 'gma', 'Glyma.12G072500' => 'gma', 'Glyma.12G085500' => 'gma', 'Glyma.12G181800' => 'gma', 'Glyma.12G193000' => 'gma', 'Glyma.13G309300' => 'gma', 'Glyma.13G319000' => 'gma', 'Glyma.17G012600' => 'gma', 'Gohir.A06G148600' => 'ghi', 'Gohir.A07G115800' => 'ghi', 'Gohir.A08G003600' => 'ghi', 'Gohir.A09G093300' => 'ghi', 'Gohir.A09G105400' => 'ghi', 'Gohir.A09G105500' => 'ghi', 'Gohir.D06G154600' => 'ghi', 'Gohir.D07G120200' => 'ghi', 'Gohir.D08G013900' => 'ghi', 'Gohir.D09G093100' => 'ghi', 'Gohir.D09G102200' => 'ghi', 'Gohir.D09G102300' => 'ghi', 'Gorai.001G129400' => 'gra', 'Gorai.004G008200' => 'gra', 'Gorai.006G109800' => 'gra', 'Gorai.006G119500' => 'gra', 'Gorai.006G121300' => 'gra', 'Gorai.010G180700' => 'gra', 'GSVIVG01012716001' => 'vvi', 'GSVIVG01025118001' => 'vvi', 'GSVIVG01030439001' => 'vvi', 'GSVIVG01031397001' => 'vvi', 'HanXRQChr01g0004201' => 'han', 'HanXRQChr02g0054941' => 'han', 'HanXRQChr05g0141811' => 'han', 'HanXRQChr07g0197751' => 'han', 'HanXRQChr11g0346691' => 'han', 'HanXRQChr13g0396971' => 'han', 'HanXRQChr14g0432951' => 'han', 'HanXRQChr14g0452001' => 'han', 'HanXRQChr15g0496681' => 'han', 'HanXRQChr17g0557491' => 'han', 'HanXRQChr17g0557501' => 'han', 'Haze_06809' => 'cav', 'Haze_12852' => 'cav', 'Haze_15850' => 'cav', 'Haze_23446' => 'cav', 'Haze_23942' => 'cav', 'Haze_23943' => 'cav', 'Hma1.2p1_0091F.1_g046450' => 'hma', 'Hma1.2p1_0128F.1_g059910' => 'hma', 'Hma1.2p1_0249F.1_g102260' => 'hma', 'Hma1.2p1_0453F.1_g156190' => 'hma', 'Hma1.2p1_0695F.1_g204380' => 'hma', 'Hma1.2p1_0749F.1_g212650' => 'hma', 'Hma1.2p1_2156F.1_g315420' => 'hma', 'Hma1.2p1_2686F.1_g326940' => 'hma', 'HPP92_006428' => 'vpl', 'HPP92_012069' => 'vpl', 'HPP92_014129' => 'vpl', 'HPP92_014133' => 'vpl', 'HPP92_017315' => 'vpl', 'HPP92_026445' => 'vpl', 'HPP92_026446' => 'vpl', 'Hund00774' => 'sun', 'Hund07682' => 'sun', 'Hund21413' => 'sun', 'Hund23462' => 'sun', 'Hund23463' => 'sun', 'Lalb_Chr03g0027911' => 'lal', 'Lalb_Chr13g0304271' => 'lal', 'Lalb_Chr19g0137471' => 'lal', 'Lalb_Chr22g0350651' => 'lal', 'Lalb_Chr24g0395151' => 'lal', 'Lj1A1231T40' => 'lonja', 'Lj1A221T48' => 'lonja', 'Lj1C924T12' => 'lonja', 'Lj2C993G6' => 'lonja', 'Lj3g0005790' => 'lja', 'Lj3g0015432' => 'lja', 'Lj3g0017722' => 'lja', 'Lj3g0018497' => 'lja', 'Lj4g0025071' => 'lja', 'Lsat_1_v5_gn_1_129680' => 'lsa', 'Lsat_1_v5_gn_2_25321' => 'lsa', 'Lsat_1_v5_gn_2_95461' => 'lsa', 'Lsat_1_v5_gn_4_159620' => 'lsa', 'Lsat_1_v5_gn_6_41301' => 'lsa', 'Lsat_1_v5_gn_6_74660' => 'lsa', 'Lsat_1_v5_gn_7_11520' => 'lsa', 'Lsat_1_v5_gn_9_67680' => 'lsa', 'Manes.04G008300' => 'mes', 'Manes.04G008400' => 'mes', 'Manes.04G026500' => 'mes', 'Manes.10G135300' => 'mes', 'Manes.11G157300' => 'mes', 'Manes.12G074000' => 'mes', 'Manes.16G006200' => 'mes', 'Manes.17G026400' => 'mes', 'Mapoly0024s0086' => 'mpo', 'Mapoly0024s0087' => 'mpo', 'Mapoly0071s0057' => 'mpo', 'Mapoly0204s0012' => 'mpo', 'MBI04_g37681_MAGBIO' => 'mbi', 'MBI05_g17779_MAGBIO' => 'mbi', 'MBI12_g31184_MAGBIO' => 'mbi', 'MBI17_g11083_MAGBIO' => 'mbi', 'MBI18_g03883_MAGBIO' => 'mbi', 'MBI18_g28940_MAGBIO' => 'mbi', 'MCO01G690' => 'mco', 'MD03G1109900' => 'mdo', 'MD03G1134800' => 'mdo', 'MD05G1348000' => 'mdo', 'MD10G1322400' => 'mdo', 'MD11G1123300' => 'mdo', 'MD11G1157600' => 'mdo', 'Medtr2g084875' => 'mtr', 'Medtr2g088130' => 'mtr', 'Medtr4g055310' => 'mtr', 'Medtr4g061070' => 'mtr', 'Medtr4g132250' => 'mtr', 'MELO3C004795.2' => 'cme', 'MELO3C004797.2' => 'cme', 'MELO3C007396.2' => 'cme', 'MELO3C019277.2' => 'cme', 'MELO3C021449.2' => 'cme', 'MELO3C025736.2' => 'cme', 'Migut.D02175' => 'egut', 'Migut.H01573' => 'egut', 'Migut.M01327' => 'egut', 'Migut.N02513' => 'egut', 'MSTRG.14638' => 'ama', 'MSTRG.18632' => 'ama', 'MSTRG.7203' => 'ama', 'Nitab4.5_0000533g0140' => 'nta', 'Nitab4.5_0000888g0150' => 'nta', 'Nitab4.5_0001453g0040' => 'nta', 'Nitab4.5_0002827g0090' => 'nta', 'Nitab4.5_0003082g0040' => 'nta', 'Nitab4.5_0007799g0040' => 'nta', 'Nitab4.5_0008983g0010' => 'nta', 'Nitab4.5_0009017g0020' => 'nta', 'Nn1g02132' => 'nnu', 'Nn1g03492' => 'nnu', 'Nn1g03493' => 'nnu', 'Nn1g03494' => 'nnu', 'Nn1g07164' => 'nnu', 'Nn1g07291' => 'nnu', 'Nn2g10655' => 'nnu', 'Nn2g11652' => 'nnu', 'Nn2g14008' => 'nnu', 'Nn3g17476' => 'nnu', 'Nn3g17477' => 'nnu', 'Nn4g22370' => 'nnu', 'Nn4g25255' => 'nnu', 'Nn5g27755' => 'nnu', 'Nn6g34260' => 'nnu', 'Nn6g35041' => 'nnu', 'Oeu005924.1' => 'oeu', 'Oeu008383.1' => 'oeu', 'Oeu014928.1' => 'oeu', 'Oeu019889.1' => 'oeu', 'Oeu022271.1' => 'oeu', 'Oeu025271.1' => 'oeu', 'Oeu036302.1' => 'oeu', 'Oeu044100.1' => 'oeu', 'Os01g0528300' => 'osa', 'Os03g0286200' => 'osa', 'Os04g0406600' => 'osa', 'Os07g0512000' => 'osa', 'Os07g0694600' => 'osa', 'Os08g0411000' => 'osa', 'Os09g0565700' => 'osa', 'Os09g0566050' => 'osa', 'Os10g0523700' => 'osa', 'Peaxi162Scf00002g00514' => 'pax', 'Peaxi162Scf00047g01817' => 'pax', 'Peaxi162Scf00114g00001' => 'pax', 'Peaxi162Scf00147g00613' => 'pax', 'Peaxi162Scf00389g00425' => 'pax', 'PGR042G1139' => 'pgr', 'PGR042G3273' => 'pgr', 'PGR102G2180' => 'pgr', 'PGR119G0234' => 'pgr', 'PGR119G0668' => 'pgr', 'PGSC0003DMG400007122' => 'stu', 'PGSC0003DMG400016478' => 'stu', 'PGSC0003DMG400025374' => 'stu', 'PGSC0003DMG400026536' => 'stu', 'Phvul.003G079600' => 'pvu', 'Phvul.005G115600' => 'pvu', 'Phvul.005G127100' => 'pvu', 'Phvul.006G149500' => 'pvu', 'Phvul.006G149600' => 'pvu', 'Phvul.011G071800' => 'pvu', 'Phvul.011G090400' => 'pvu', 'Potri.004G013400' => 'ptr', 'Potri.004G188100' => 'ptr', 'Potri.008G195500' => 'ptr', 'Potri.009G148800' => 'ptr', 'Potri.011G004700' => 'ptr', 'Pp3c17_22810' => 'ppa', 'Pp3c18_4480' => 'ppa', 'Pp3c19_13030' => 'ppa', 'Pp3c1_33620' => 'ppa', 'Pp3c2_9380' => 'ppa', 'PRCOL_00001023' => 'pco', 'Prupe.3G216300' => 'ppe', 'Prupe.4G019500' => 'ppe', 'Prupe.6G092500' => 'ppe', 'Prupe.6G119200' => 'ppe', 'Psat0s1945g0080' => 'psa', 'Psat0s4167g0040' => 'psa', 'Psat1g185800' => 'psa', 'Psat4g006440' => 'psa', 'Psat4g006480' => 'psa', 'Psat4g168120' => 'psa', 'Psat5g255680' => 'psa', 'Psat5g261760' => 'psa', 'Psat7g222120' => 'psa', 'PSO063G7252' => 'pso', 'PSO170G4778' => 'pso', 'PSO210G2249' => 'pso', 'PSO339G2411' => 'pso', 'PSO339G2457' => 'pso', 'PSO339G2854' => 'pso', 'PSO339G4288' => 'pso', 'PSO339G4615' => 'pso', 'PSO384G2796' => 'pso', 'PSO384G2940' => 'pso', 'PSO384G4227' => 'pso', 'PSO478G1425' => 'pso', 'PSO541G3863' => 'pso', 'PSO675G0507' => 'pso', 'PSO782G0338' => 'pso', 'PSO832G0644' => 'pso', 'QL01p013664' => 'qlo', 'QL01p036598' => 'qlo', 'QL05p072984' => 'qlo', 'QL08p005768' => 'qlo', 'QL08p032743' => 'qlo', 'QL93p0073_0439' => 'qlo', 'QL93p0073_0444' => 'qlo', 'RcHm_v2.0_Chr5g0002851' => 'rch', 'RcHm_v2.0_Chr5g0055201' => 'rch', 'RcHm_v2.0_Chr5g0061191' => 'rch', 'RcHm_v2.0_Chr7g0203231' => 'rch', 'Rhsim01G0208100' => 'rsi', 'Rhsim01G0208200' => 'rsi', 'Rhsim02G0106500' => 'rsi', 'Rhsim03G0107900' => 'rsi', 'Rhsim06G0163400' => 'rsi', 'Rhsim13G0105200' => 'rsi', 'Sabra04G0006300' => 'sbr', 'Sabra04G0127000' => 'sbr', 'Sabra08G0148700' => 'sbr', 'Sabra09G0117400' => 'sbr', 'SalBow1G3326' => 'sbo', 'SalBow3G3228' => 'sbo', 'SalBow6G1634' => 'sbo', 'SalBow6G3603' => 'sbo', 'SalBow6G5266' => 'sbo', 'SalBow7G2265' => 'sbo', 'SalBow8G0850' => 'sbo', 'SalBow8G2592' => 'sbo', 'Sc05g0009240' => 'sci', 'Sc12g0002300' => 'sci', 'Sc21g0000100' => 'sci', 'Sc21g0004720' => 'sci', 'Sed0002949' => 'sed', 'Sed0004114' => 'sed', 'Sed0004306' => 'sed', 'Sed0006172' => 'sed', 'Sed0008413' => 'sed', 'Sed0013809' => 'sed', 'Sed0019556' => 'sed', 'SEGI_03570' => 'sgi', 'SEGI_07859' => 'sgi', 'SEGI_15042' => 'sgi', 'SEGI_16263' => 'sgi', 'SEGI_16552' => 'sgi', 'SEGI_24331' => 'sgi', 'SEGI_27316' => 'sgi', 'SEGI_29521' => 'sgi', 'SEGI_41342' => 'sgi', 'SGA_v2.0_scaffold27G11617' => 'sas', 'SGA_v2.0_scaffold316G48428' => 'sas', 'SGA_v2.0_scaffold49G18261' => 'sas', 'SGA_v2.0_scaffold7G03831' => 'sas', 'SGA_v2.0_scaffold93G28359' => 'sas', 'SHI02210' => 'shi', 'SHI06028' => 'shi', 'SHI06321' => 'shi', 'SMO111G0012' => 'smo', 'SMO228G0080' => 'smo', 'SMO356G0756' => 'smo', 'Solyc02g080620.3' => 'sly', 'Solyc06g074530.1' => 'sly', 'Solyc11g066890.1' => 'sly', 'Solyc11g072520.3' => 'sly', 'Sopen02g025330' => 'spe', 'Sopen06g031000' => 'spe', 'Sopen09g008240' => 'spe', 'Sopen09g025210' => 'spe', 'Sopen11g026600' => 'spe', 'Sopen11g030170' => 'spe', 'Sp1g10420' => 'spa', 'Sp3g06570' => 'spa', 'Sp4g10660' => 'spa', 'Sp5g16460' => 'spa', 'Sp6g22710' => 'spa', 'TAR365G0112' => 'tar', 'TAR369G0717' => 'tar', 'TAR374G0976' => 'tar', 'TAR623G1128' => 'tar', 'TAR626G1937' => 'tar', 'TAR627G0123' => 'tar', 'TAR628G0305' => 'tar', 'TAR636G1176' => 'tar', 'TAR636G2442' => 'tar', 'THA.LOC104800556' => 'tha', 'THA.LOC104809501' => 'tha', 'THA.LOC104815126' => 'tha', 'THA.LOC104815732' => 'tha', 'THA.LOC104823528' => 'tha', 'Thecc.02G365600' => 'tca', 'Thecc.06G222300' => 'tca', 'Thecc.09G261800' => 'tca', 'Thecc.09G291400' => 'tca', 'Thhalv10003028m.g' => 'esa', 'Thhalv10007886m.g' => 'esa', 'Thhalv10016085m.g' => 'esa', 'Thhalv10016681m.g' => 'esa', 'Thhalv10020951m.g' => 'esa', 'TPR.G15598' => 'tpr', 'TPR.G29305' => 'tpr', 'TPR.G32395' => 'tpr', 'TPR.G36998' => 'tpr', 'TPR.G4227' => 'tpr', 'TWI18G1433' => 'twi', 'TWI31G0755' => 'twi', 'TWI38G0912' => 'twi', 'TWI75G1097' => 'twi', 'TWI75G1619' => 'twi', 'TWI79G1336' => 'twi', 'unitig_0.g943' => 'ugi', 'unitig_0.g944' => 'ugi', 'unitig_22.g6646' => 'ugi', 'unitig_37.g12681' => 'ugi', 'unitig_8.g3290' => 'ugi', 'vmacro03278' => 'vma', 'vmacro12197' => 'vma', 'vmacro14478' => 'vma', 'vmacro15787' => 'vma', 'vmacro15789' => 'vma', 'vmacro15790' => 'vma', 'vmacro15806' => 'vma', 'vmacro22907' => 'vma', 'vmacro22908' => 'vma', 'vmacro22909' => 'vma', 'vmacro23108' => 'vma', 'VMungo0540G0540' => 'vmu', 'VMungo0540G2468' => 'vmu', 'VMungo1080G0390' => 'vmu', 'VMungo1080G1165' => 'vmu', 'VMungo1127G0170' => 'vmu', 'VMungo1127G2099' => 'vmu', 'VMungo1215G3013' => 'vmu', 'Zm00001eb013110' => 'zma', 'Zm00001eb084260' => 'zma', 'Zm00001eb096110' => 'zma', 'Zm00001eb217510' => 'zma', 'Zm00001eb322550' => 'zma', 'Zm00001eb390770' => 'zma', 'Zm00001eb397170' => 'zma', 'Zm00001eb404610' => 'zma', 'Zm00001eb421790' => 'zma' ) $gf_id = 'HOM05D000911' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000911' ) $data_identifier = 'HOM05D000911' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 16, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 5, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 6, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 8, 'nnu' => (int) 16, 'oeu' => (int) 8, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 5, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 16, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421790' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000911', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27780' => 'bna', 'A03p35380' => 'bna', 'A04p21160' => 'bna', 'A05p40570' => 'bna', 'A06p26900' => 'bna', 'A08p33230' => 'bna', 'A09p65960' => 'bna', 'A10p18290' => 'bna', 'Aa31LG1G12990' => 'aar', 'Aa31LG1G2980' => 'aar', 'Aa31LG4G14320' => 'aar', 'Aa31LG7G11800' => 'aar', 'Aa31sc36G50' => 'aar', 'Aa31sc36G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3721' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5459' => 'aag', 'Actinidia03028' => 'ach', 'Actinidia03753' => 'ach', 'Actinidia04187' => 'ach', 'Actinidia05509' => 'ach', 'Actinidia24180' => 'ach', 'Actinidia26906' => 'ach', 'Actinidia37097' => 'ach', 'Actinidia38249' => 'ach', 'Ah.01g003470' => 'amhyb', 'Ah.01g004580' => 'amhyb', 'Ah.01g014850' => 'amhyb', 'Ah.01g016830' => 'amhyb', 'Ah.14g088000' => 'amhyb', 'AL1G22980' => 'aly', 'AL3G18990' => 'aly', 'AL4G22440' => 'aly', 'AL4G33180' => 'aly', 'AL5G22920' => 'aly', 'AL6G33660' => 'aly', 'AL8G20720' => 'aly', 'Aqoxy1G00935' => 'aox', 'Aqoxy1G02094' => 'aox', 'Aqoxy2G01239' => 'aox', 'Aqoxy4G01870' => 'aox', 'Aqoxy7G00450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.36ZVTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71EM27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5D6C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH3WRE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3NCM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RIM768' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YB5YRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z36GDV' => 'arhy', 'AT1G08250' => 'ath', 'AT1G11790' => 'ath', 'AT2G27820' => 'ath', 'AT3G07630' => 'ath', 'AT3G44720' => 'ath', 'AT5G22630' => 'ath', 'ATR0693G304' => 'atr', 'ATR0794G109' => 'atr', 'ATR0820G120' => 'atr', 'ATR1159G064' => 'atr', 'Atru.chr10.2239' => 'acertr', 'Atru.chr3.3371' => 'acertr', 'Atru.chr6.3202' => 'acertr', 'AUR62006499' => 'cqu', 'AUR62012718' => 'cqu', 'AUR62021938' => 'cqu', 'AUR62023932' => 'cqu', 'AUR62025034' => 'cqu', 'AUR62025035' => 'cqu', 'AUR62038307' => 'cqu', 'AUR62043466' => 'cqu', 'BcaB02g10748' => 'bca', 'BcaB03g13231' => 'bca', 'BcaB03g14689' => 'bca', 'BcaB05g22716' => 'bca', 'BcaB06g28172' => 'bca', 'BcaB08g36413' => 'bca', 'BcaC01g02186' => 'bca', 'BcaC01g04272' => 'bca', 'BcaC02g08080' => 'bca', 'BcaC02g08227' => 'bca', 'BcaC03g13901' => 'bca', 'BcaC04g19593' => 'bca', 'BcaC04g20874' => 'bca', 'BcaC05g29557' => 'bca', 'BcaC06g35505' => 'bca', 'BcaC07g41954' => 'bca', 'BcaC07g41955' => 'bca', 'BcaC07g41956' => 'bca', 'BcaC07g42519' => 'bca', 'BcaC07g42520' => 'bca', 'BcaC07g42523' => 'bca', 'BcaC07g42524' => 'bca', 'BcaC07g42525' => 'bca', 'BcaC08g47480' => 'bca', 'BcaC08g47481' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00530' => 'bna', 'BolC2t07178H' => 'bol', 'BolC3t16567H' => 'bol', 'BolC4t27234H' => 'bol', 'BolC5t29728H' => 'bol', 'BolC5t34622H' => 'bol', 'BolC6t40321H' => 'bol', 'BolC7t42028H' => 'bol', 'BolC8t49125H' => 'bol', 'BolC8t52538H' => 'bol', 'BolC8t52539H' => 'bol', 'BolC9t56681H' => 'bol', 'BolC9t58266H' => 'bol', 'BolSC21t60294H' => 'bol', 'BraA02t05670Z' => 'bra', 'BraA03t12716Z' => 'bra', 'BraA04t17685Z' => 'bra', 'BraA05t22788Z' => 'bra', 'BraA06t24032Z' => 'bra', 'BraA06t25625Z' => 'bra', 'BraA07t27930Z' => 'bra', 'BraA08t35242Z' => 'bra', 'BraA09t38609Z' => 'bra', 'BraA10t43905Z' => 'bra', 'C02p11060' => 'bna', 'C03p42990' => 'bna', 'C03p67310' => 'bna', 'C04p56990' => 'bna', 'C04p58660' => 'bna', 'C05p09890' => 'bna', 'C05p59680' => 'bna', 'C06p19830' => 'bna', 'C06p53040' => 'bna', 'C07p15230' => 'bna', 'C08p50070' => 'bna', 'C08p50090' => 'bna', 'C09p38330' => 'bna', 'C09p53940' => 'bna', 'CAN.G1014.1' => 'can', 'CAN.G644.30' => 'can', 'CAN.G84.47' => 'can', 'CAN.G919.8' => 'can', 'CANSAT54G0113' => 'cansat', 'CANSAT54G1286' => 'cansat', 'CANSAT64G1020' => 'cansat', 'CARHR008080' => 'chi', 'CARHR008090' => 'chi', 'CARHR012130' => 'chi', 'CARHR038390' => 'chi', 'CARHR082330' => 'chi', 'CARHR120520' => 'chi', 'CARHR151470' => 'chi', 'CARHR190950' => 'chi', 'Carub.0001s0760' => 'cru', 'Carub.0001s1146' => 'cru', 'Carub.0003s0721' => 'cru', 'Carub.0004s0858' => 'cru', 'Carub.0005s1040' => 'cru', 'Carub.0006s2035' => 'cru', 'Carub.0015s0005' => 'cru', 'Ca_01607_v3' => 'car', 'Ca_01677_v3' => 'car', 'Ca_06087_v3' => 'car', 'Ca_19238_v3' => 'car', 'Ca_19373_v3' => 'car', 'Ca_21079_v3' => 'car', 'CBR_g54016' => 'cbr', 'CBR_g54018' => 'cbr', 'CBR_g54020' => 'cbr', 'Cc01_g09780' => 'ccan', 'Cc01_g11680' => 'ccan', 'Cc02_g15610' => 'ccan', 'Cc05_g04350' => 'ccan', 'Cc09_g01580' => 'ccan', 'CDE01G0795' => 'cde', 'CDE02G2024' => 'cde', 'CDE02G2260' => 'cde', 'CDE02G4561' => 'cde', 'CDE05G2733' => 'cde', 'CDE05G3422' => 'cde', 'CDE06G2003' => 'cde', 'CDE08G0576' => 'cde', 'CDE09G0048' => 'cde', 'CDE11G0805' => 'cde', 'Cfa003644' => 'cfa', 'Cfa006290' => 'cfa', 'Cfa010080' => 'cfa', 'Cfa011376' => 'cfa', 'Cfa011576' => 'cfa', 'Cfa011577' => 'cfa', 'Cfa014389' => 'cfa', 'Ciclev10006044m.g' => 'ccl', 'Ciclev10006954m.g' => 'ccl', 'Ciclev10015131m.g' => 'ccl', 'Ciclev10015580m.g' => 'ccl', 'Ciclev10028359m.g' => 'ccl', 'Ciclev10028573m.g' => 'ccl', 'CiPaw.03G159300' => 'cil', 'CiPaw.04G115100' => 'cil', 'CiPaw.09G092800' => 'cil', 'CiPaw.10G071800' => 'cil', 'CiPaw.13G105800' => 'cil', 'CiPaw.13G141000' => 'cil', 'CiPaw.14G103400' => 'cil', 'ClCG01G012700' => 'cla', 'ClCG01G012720' => 'cla', 'ClCG01G021920' => 'cla', 'ClCG02G008870' => 'cla', 'ClCG02G020840' => 'cla', 'ClCG02G021930' => 'cla', 'COL.COLO4_19302' => 'col', 'COL.COLO4_25262' => 'col', 'COL.COLO4_31788' => 'col', 'Cpa.g.c34684' => 'cpa', 'Cpa.g.c36520.1' => 'cpa', 'Cpa.g.c45626' => 'cpa', 'Cpa.g.sc121.17' => 'cpa', 'Cpa.g.sc13.22' => 'cpa', 'Cpa.g.sc87.88' => 'cpa', 'Cre06.g261800' => 'cre', 'CsaV3_1G014500' => 'csa', 'CsaV3_1G014510' => 'csa', 'CsaV3_2G034880' => 'csa', 'CsaV3_6G014760' => 'csa', 'CsaV3_6G021500' => 'csa', 'CsaV3_6G048980' => 'csa', 'CSS0002511' => 'camsi', 'CSS0007556' => 'camsi', 'CSS0008532' => 'camsi', 'CSS0009709' => 'camsi', 'CSS0010486' => 'camsi', 'CSS0016768' => 'camsi', 'CSS0023512' => 'camsi', 'CSS0025341' => 'camsi', 'CSS0027999' => 'camsi', 'CSS0028944' => 'camsi', 'CSS0032292' => 'camsi', 'CSS0032464' => 'camsi', 'CSS0037153' => 'camsi', 'CSS0039256' => 'camsi', 'CSS0048392' => 'camsi', 'CSS0050458' => 'camsi', 'DCAR_004224' => 'dca', 'DCAR_006147' => 'dca', 'DCAR_006465' => 'dca', 'DCAR_008159' => 'dca', 'DCAR_012164' => 'dca', 'DCAR_019764' => 'dca', 'Dinv05418' => 'din', 'Dinv10839' => 'din', 'Dinv12521' => 'din', 'Dinv13900' => 'din', 'Dinv29426' => 'din', 'Duzib150G0263' => 'dzi', 'Duzib168G1178' => 'dzi', 'Duzib168G1924' => 'dzi', 'Duzib170G0299' => 'dzi', 'Duzib170G0813' => 'dzi', 'Duzib235G1128' => 'dzi', 'Duzib248G1060' => 'dzi', 'ECA232G1910' => 'eca', 'ECA233G4621' => 'eca', 'ECA238G1216' => 'eca', 'ECA238G1784' => 'eca', 'ECA248G1242' => 'eca', 'EL10Ac8g20071' => 'bvu', 'EL10Ac9g21086' => 'bvu', 'EL10Ac9g22407' => 'bvu', 'EL10Ac9g22412' => 'bvu', 'Eucgr.A01119' => 'egr', 'Eucgr.E04043' => 'egr', 'Eucgr.J00428' => 'egr', 'Eucgr.J00958' => 'egr', 'FAN11G3091' => 'fan', 'FAN11G3651' => 'fan', 'FAN16G2566' => 'fan', 'FAN21G3155' => 'fan', 'FAN21G3400' => 'fan', 'FAN21G3543' => 'fan', 'FAN25G0234' => 'fan', 'FAN25G1422' => 'fan', 'FAN25G3392' => 'fan', 'FvH4_3g01940' => 'fve', 'FvH4_3g29870' => 'fve', 'FvH4_3g33680' => 'fve', 'Glyma.09G004200' => 'gma', 'Glyma.11G151288' => 'gma', 'Glyma.11G189100' => 'gma', 'Glyma.12G072500' => 'gma', 'Glyma.12G085500' => 'gma', 'Glyma.12G181800' => 'gma', 'Glyma.12G193000' => 'gma', 'Glyma.13G309300' => 'gma', 'Glyma.13G319000' => 'gma', 'Glyma.17G012600' => 'gma', 'Gohir.A06G148600' => 'ghi', 'Gohir.A07G115800' => 'ghi', 'Gohir.A08G003600' => 'ghi', 'Gohir.A09G093300' => 'ghi', 'Gohir.A09G105400' => 'ghi', 'Gohir.A09G105500' => 'ghi', 'Gohir.D06G154600' => 'ghi', 'Gohir.D07G120200' => 'ghi', 'Gohir.D08G013900' => 'ghi', 'Gohir.D09G093100' => 'ghi', 'Gohir.D09G102200' => 'ghi', 'Gohir.D09G102300' => 'ghi', 'Gorai.001G129400' => 'gra', 'Gorai.004G008200' => 'gra', 'Gorai.006G109800' => 'gra', 'Gorai.006G119500' => 'gra', 'Gorai.006G121300' => 'gra', 'Gorai.010G180700' => 'gra', 'GSVIVG01012716001' => 'vvi', 'GSVIVG01025118001' => 'vvi', 'GSVIVG01030439001' => 'vvi', 'GSVIVG01031397001' => 'vvi', 'HanXRQChr01g0004201' => 'han', 'HanXRQChr02g0054941' => 'han', 'HanXRQChr05g0141811' => 'han', 'HanXRQChr07g0197751' => 'han', 'HanXRQChr11g0346691' => 'han', 'HanXRQChr13g0396971' => 'han', 'HanXRQChr14g0432951' => 'han', 'HanXRQChr14g0452001' => 'han', 'HanXRQChr15g0496681' => 'han', 'HanXRQChr17g0557491' => 'han', 'HanXRQChr17g0557501' => 'han', 'Haze_06809' => 'cav', 'Haze_12852' => 'cav', 'Haze_15850' => 'cav', 'Haze_23446' => 'cav', 'Haze_23942' => 'cav', 'Haze_23943' => 'cav', 'Hma1.2p1_0091F.1_g046450' => 'hma', 'Hma1.2p1_0128F.1_g059910' => 'hma', 'Hma1.2p1_0249F.1_g102260' => 'hma', 'Hma1.2p1_0453F.1_g156190' => 'hma', 'Hma1.2p1_0695F.1_g204380' => 'hma', 'Hma1.2p1_0749F.1_g212650' => 'hma', 'Hma1.2p1_2156F.1_g315420' => 'hma', 'Hma1.2p1_2686F.1_g326940' => 'hma', 'HPP92_006428' => 'vpl', 'HPP92_012069' => 'vpl', 'HPP92_014129' => 'vpl', 'HPP92_014133' => 'vpl', 'HPP92_017315' => 'vpl', 'HPP92_026445' => 'vpl', 'HPP92_026446' => 'vpl', 'Hund00774' => 'sun', 'Hund07682' => 'sun', 'Hund21413' => 'sun', 'Hund23462' => 'sun', 'Hund23463' => 'sun', 'Lalb_Chr03g0027911' => 'lal', 'Lalb_Chr13g0304271' => 'lal', 'Lalb_Chr19g0137471' => 'lal', 'Lalb_Chr22g0350651' => 'lal', 'Lalb_Chr24g0395151' => 'lal', 'Lj1A1231T40' => 'lonja', 'Lj1A221T48' => 'lonja', 'Lj1C924T12' => 'lonja', 'Lj2C993G6' => 'lonja', 'Lj3g0005790' => 'lja', 'Lj3g0015432' => 'lja', 'Lj3g0017722' => 'lja', 'Lj3g0018497' => 'lja', 'Lj4g0025071' => 'lja', 'Lsat_1_v5_gn_1_129680' => 'lsa', 'Lsat_1_v5_gn_2_25321' => 'lsa', 'Lsat_1_v5_gn_2_95461' => 'lsa', 'Lsat_1_v5_gn_4_159620' => 'lsa', 'Lsat_1_v5_gn_6_41301' => 'lsa', 'Lsat_1_v5_gn_6_74660' => 'lsa', 'Lsat_1_v5_gn_7_11520' => 'lsa', 'Lsat_1_v5_gn_9_67680' => 'lsa', 'Manes.04G008300' => 'mes', 'Manes.04G008400' => 'mes', 'Manes.04G026500' => 'mes', 'Manes.10G135300' => 'mes', 'Manes.11G157300' => 'mes', 'Manes.12G074000' => 'mes', 'Manes.16G006200' => 'mes', 'Manes.17G026400' => 'mes', 'Mapoly0024s0086' => 'mpo', 'Mapoly0024s0087' => 'mpo', 'Mapoly0071s0057' => 'mpo', 'Mapoly0204s0012' => 'mpo', 'MBI04_g37681_MAGBIO' => 'mbi', 'MBI05_g17779_MAGBIO' => 'mbi', 'MBI12_g31184_MAGBIO' => 'mbi', 'MBI17_g11083_MAGBIO' => 'mbi', 'MBI18_g03883_MAGBIO' => 'mbi', 'MBI18_g28940_MAGBIO' => 'mbi', 'MCO01G690' => 'mco', 'MD03G1109900' => 'mdo', 'MD03G1134800' => 'mdo', 'MD05G1348000' => 'mdo', 'MD10G1322400' => 'mdo', 'MD11G1123300' => 'mdo', 'MD11G1157600' => 'mdo', 'Medtr2g084875' => 'mtr', 'Medtr2g088130' => 'mtr', 'Medtr4g055310' => 'mtr', 'Medtr4g061070' => 'mtr', 'Medtr4g132250' => 'mtr', 'MELO3C004795.2' => 'cme', 'MELO3C004797.2' => 'cme', 'MELO3C007396.2' => 'cme', 'MELO3C019277.2' => 'cme', 'MELO3C021449.2' => 'cme', 'MELO3C025736.2' => 'cme', 'Migut.D02175' => 'egut', 'Migut.H01573' => 'egut', 'Migut.M01327' => 'egut', 'Migut.N02513' => 'egut', 'MSTRG.14638' => 'ama', 'MSTRG.18632' => 'ama', 'MSTRG.7203' => 'ama', 'Nitab4.5_0000533g0140' => 'nta', 'Nitab4.5_0000888g0150' => 'nta', 'Nitab4.5_0001453g0040' => 'nta', 'Nitab4.5_0002827g0090' => 'nta', 'Nitab4.5_0003082g0040' => 'nta', 'Nitab4.5_0007799g0040' => 'nta', 'Nitab4.5_0008983g0010' => 'nta', 'Nitab4.5_0009017g0020' => 'nta', 'Nn1g02132' => 'nnu', 'Nn1g03492' => 'nnu', 'Nn1g03493' => 'nnu', 'Nn1g03494' => 'nnu', 'Nn1g07164' => 'nnu', 'Nn1g07291' => 'nnu', 'Nn2g10655' => 'nnu', 'Nn2g11652' => 'nnu', 'Nn2g14008' => 'nnu', 'Nn3g17476' => 'nnu', 'Nn3g17477' => 'nnu', 'Nn4g22370' => 'nnu', 'Nn4g25255' => 'nnu', 'Nn5g27755' => 'nnu', 'Nn6g34260' => 'nnu', 'Nn6g35041' => 'nnu', 'Oeu005924.1' => 'oeu', 'Oeu008383.1' => 'oeu', 'Oeu014928.1' => 'oeu', 'Oeu019889.1' => 'oeu', 'Oeu022271.1' => 'oeu', 'Oeu025271.1' => 'oeu', 'Oeu036302.1' => 'oeu', 'Oeu044100.1' => 'oeu', 'Os01g0528300' => 'osa', 'Os03g0286200' => 'osa', 'Os04g0406600' => 'osa', 'Os07g0512000' => 'osa', 'Os07g0694600' => 'osa', 'Os08g0411000' => 'osa', 'Os09g0565700' => 'osa', 'Os09g0566050' => 'osa', 'Os10g0523700' => 'osa', 'Peaxi162Scf00002g00514' => 'pax', 'Peaxi162Scf00047g01817' => 'pax', 'Peaxi162Scf00114g00001' => 'pax', 'Peaxi162Scf00147g00613' => 'pax', 'Peaxi162Scf00389g00425' => 'pax', 'PGR042G1139' => 'pgr', 'PGR042G3273' => 'pgr', 'PGR102G2180' => 'pgr', 'PGR119G0234' => 'pgr', 'PGR119G0668' => 'pgr', 'PGSC0003DMG400007122' => 'stu', 'PGSC0003DMG400016478' => 'stu', 'PGSC0003DMG400025374' => 'stu', 'PGSC0003DMG400026536' => 'stu', 'Phvul.003G079600' => 'pvu', 'Phvul.005G115600' => 'pvu', 'Phvul.005G127100' => 'pvu', 'Phvul.006G149500' => 'pvu', 'Phvul.006G149600' => 'pvu', 'Phvul.011G071800' => 'pvu', 'Phvul.011G090400' => 'pvu', 'Potri.004G013400' => 'ptr', 'Potri.004G188100' => 'ptr', 'Potri.008G195500' => 'ptr', 'Potri.009G148800' => 'ptr', 'Potri.011G004700' => 'ptr', 'Pp3c17_22810' => 'ppa', 'Pp3c18_4480' => 'ppa', 'Pp3c19_13030' => 'ppa', 'Pp3c1_33620' => 'ppa', 'Pp3c2_9380' => 'ppa', 'PRCOL_00001023' => 'pco', 'Prupe.3G216300' => 'ppe', 'Prupe.4G019500' => 'ppe', 'Prupe.6G092500' => 'ppe', 'Prupe.6G119200' => 'ppe', 'Psat0s1945g0080' => 'psa', 'Psat0s4167g0040' => 'psa', 'Psat1g185800' => 'psa', 'Psat4g006440' => 'psa', 'Psat4g006480' => 'psa', 'Psat4g168120' => 'psa', 'Psat5g255680' => 'psa', 'Psat5g261760' => 'psa', 'Psat7g222120' => 'psa', 'PSO063G7252' => 'pso', 'PSO170G4778' => 'pso', 'PSO210G2249' => 'pso', 'PSO339G2411' => 'pso', 'PSO339G2457' => 'pso', 'PSO339G2854' => 'pso', 'PSO339G4288' => 'pso', 'PSO339G4615' => 'pso', 'PSO384G2796' => 'pso', 'PSO384G2940' => 'pso', 'PSO384G4227' => 'pso', 'PSO478G1425' => 'pso', 'PSO541G3863' => 'pso', 'PSO675G0507' => 'pso', 'PSO782G0338' => 'pso', 'PSO832G0644' => 'pso', 'QL01p013664' => 'qlo', 'QL01p036598' => 'qlo', 'QL05p072984' => 'qlo', 'QL08p005768' => 'qlo', 'QL08p032743' => 'qlo', 'QL93p0073_0439' => 'qlo', 'QL93p0073_0444' => 'qlo', 'RcHm_v2.0_Chr5g0002851' => 'rch', 'RcHm_v2.0_Chr5g0055201' => 'rch', 'RcHm_v2.0_Chr5g0061191' => 'rch', 'RcHm_v2.0_Chr7g0203231' => 'rch', 'Rhsim01G0208100' => 'rsi', 'Rhsim01G0208200' => 'rsi', 'Rhsim02G0106500' => 'rsi', 'Rhsim03G0107900' => 'rsi', 'Rhsim06G0163400' => 'rsi', 'Rhsim13G0105200' => 'rsi', 'Sabra04G0006300' => 'sbr', 'Sabra04G0127000' => 'sbr', 'Sabra08G0148700' => 'sbr', 'Sabra09G0117400' => 'sbr', 'SalBow1G3326' => 'sbo', 'SalBow3G3228' => 'sbo', 'SalBow6G1634' => 'sbo', 'SalBow6G3603' => 'sbo', 'SalBow6G5266' => 'sbo', 'SalBow7G2265' => 'sbo', 'SalBow8G0850' => 'sbo', 'SalBow8G2592' => 'sbo', 'Sc05g0009240' => 'sci', 'Sc12g0002300' => 'sci', 'Sc21g0000100' => 'sci', 'Sc21g0004720' => 'sci', 'Sed0002949' => 'sed', 'Sed0004114' => 'sed', 'Sed0004306' => 'sed', 'Sed0006172' => 'sed', 'Sed0008413' => 'sed', 'Sed0013809' => 'sed', 'Sed0019556' => 'sed', 'SEGI_03570' => 'sgi', 'SEGI_07859' => 'sgi', 'SEGI_15042' => 'sgi', 'SEGI_16263' => 'sgi', 'SEGI_16552' => 'sgi', 'SEGI_24331' => 'sgi', 'SEGI_27316' => 'sgi', 'SEGI_29521' => 'sgi', 'SEGI_41342' => 'sgi', 'SGA_v2.0_scaffold27G11617' => 'sas', 'SGA_v2.0_scaffold316G48428' => 'sas', 'SGA_v2.0_scaffold49G18261' => 'sas', 'SGA_v2.0_scaffold7G03831' => 'sas', 'SGA_v2.0_scaffold93G28359' => 'sas', 'SHI02210' => 'shi', 'SHI06028' => 'shi', 'SHI06321' => 'shi', 'SMO111G0012' => 'smo', 'SMO228G0080' => 'smo', 'SMO356G0756' => 'smo', 'Solyc02g080620.3' => 'sly', 'Solyc06g074530.1' => 'sly', 'Solyc11g066890.1' => 'sly', 'Solyc11g072520.3' => 'sly', 'Sopen02g025330' => 'spe', 'Sopen06g031000' => 'spe', 'Sopen09g008240' => 'spe', 'Sopen09g025210' => 'spe', 'Sopen11g026600' => 'spe', 'Sopen11g030170' => 'spe', 'Sp1g10420' => 'spa', 'Sp3g06570' => 'spa', 'Sp4g10660' => 'spa', 'Sp5g16460' => 'spa', 'Sp6g22710' => 'spa', 'TAR365G0112' => 'tar', 'TAR369G0717' => 'tar', 'TAR374G0976' => 'tar', 'TAR623G1128' => 'tar', 'TAR626G1937' => 'tar', 'TAR627G0123' => 'tar', 'TAR628G0305' => 'tar', 'TAR636G1176' => 'tar', 'TAR636G2442' => 'tar', 'THA.LOC104800556' => 'tha', 'THA.LOC104809501' => 'tha', 'THA.LOC104815126' => 'tha', 'THA.LOC104815732' => 'tha', 'THA.LOC104823528' => 'tha', 'Thecc.02G365600' => 'tca', 'Thecc.06G222300' => 'tca', 'Thecc.09G261800' => 'tca', 'Thecc.09G291400' => 'tca', 'Thhalv10003028m.g' => 'esa', 'Thhalv10007886m.g' => 'esa', 'Thhalv10016085m.g' => 'esa', 'Thhalv10016681m.g' => 'esa', 'Thhalv10020951m.g' => 'esa', 'TPR.G15598' => 'tpr', 'TPR.G29305' => 'tpr', 'TPR.G32395' => 'tpr', 'TPR.G36998' => 'tpr', 'TPR.G4227' => 'tpr', 'TWI18G1433' => 'twi', 'TWI31G0755' => 'twi', 'TWI38G0912' => 'twi', 'TWI75G1097' => 'twi', 'TWI75G1619' => 'twi', 'TWI79G1336' => 'twi', 'unitig_0.g943' => 'ugi', 'unitig_0.g944' => 'ugi', 'unitig_22.g6646' => 'ugi', 'unitig_37.g12681' => 'ugi', 'unitig_8.g3290' => 'ugi', 'vmacro03278' => 'vma', 'vmacro12197' => 'vma', 'vmacro14478' => 'vma', 'vmacro15787' => 'vma', 'vmacro15789' => 'vma', 'vmacro15790' => 'vma', 'vmacro15806' => 'vma', 'vmacro22907' => 'vma', 'vmacro22908' => 'vma', 'vmacro22909' => 'vma', 'vmacro23108' => 'vma', 'VMungo0540G0540' => 'vmu', 'VMungo0540G2468' => 'vmu', 'VMungo1080G0390' => 'vmu', 'VMungo1080G1165' => 'vmu', 'VMungo1127G0170' => 'vmu', 'VMungo1127G2099' => 'vmu', 'VMungo1215G3013' => 'vmu', 'Zm00001eb013110' => 'zma', 'Zm00001eb084260' => 'zma', 'Zm00001eb096110' => 'zma', 'Zm00001eb217510' => 'zma', 'Zm00001eb322550' => 'zma', 'Zm00001eb390770' => 'zma', 'Zm00001eb397170' => 'zma', 'Zm00001eb404610' => 'zma', 'Zm00001eb421790' => 'zma' ), 'gf_id' => 'HOM05D000911', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000911' ), 'data_identifier' => 'HOM05D000911', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000911', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27780' => 'bna', 'A03p35380' => 'bna', 'A04p21160' => 'bna', 'A05p40570' => 'bna', 'A06p26900' => 'bna', 'A08p33230' => 'bna', 'A09p65960' => 'bna', 'A10p18290' => 'bna', 'Aa31LG1G12990' => 'aar', 'Aa31LG1G2980' => 'aar', 'Aa31LG4G14320' => 'aar', 'Aa31LG7G11800' => 'aar', 'Aa31sc36G50' => 'aar', 'Aa31sc36G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3721' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5459' => 'aag', 'Actinidia03028' => 'ach', 'Actinidia03753' => 'ach', 'Actinidia04187' => 'ach', 'Actinidia05509' => 'ach', 'Actinidia24180' => 'ach', 'Actinidia26906' => 'ach', 'Actinidia37097' => 'ach', 'Actinidia38249' => 'ach', 'Ah.01g003470' => 'amhyb', 'Ah.01g004580' => 'amhyb', 'Ah.01g014850' => 'amhyb', 'Ah.01g016830' => 'amhyb', 'Ah.14g088000' => 'amhyb', 'AL1G22980' => 'aly', 'AL3G18990' => 'aly', 'AL4G22440' => 'aly', 'AL4G33180' => 'aly', 'AL5G22920' => 'aly', 'AL6G33660' => 'aly', 'AL8G20720' => 'aly', 'Aqoxy1G00935' => 'aox', 'Aqoxy1G02094' => 'aox', 'Aqoxy2G01239' => 'aox', 'Aqoxy4G01870' => 'aox', 'Aqoxy7G00450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.36ZVTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71EM27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5D6C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH3WRE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3NCM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RIM768' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YB5YRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z36GDV' => 'arhy', 'AT1G08250' => 'ath', 'AT1G11790' => 'ath', 'AT2G27820' => 'ath', 'AT3G07630' => 'ath', 'AT3G44720' => 'ath', 'AT5G22630' => 'ath', 'ATR0693G304' => 'atr', 'ATR0794G109' => 'atr', 'ATR0820G120' => 'atr', 'ATR1159G064' => 'atr', 'Atru.chr10.2239' => 'acertr', 'Atru.chr3.3371' => 'acertr', 'Atru.chr6.3202' => 'acertr', 'AUR62006499' => 'cqu', 'AUR62012718' => 'cqu', 'AUR62021938' => 'cqu', 'AUR62023932' => 'cqu', 'AUR62025034' => 'cqu', 'AUR62025035' => 'cqu', 'AUR62038307' => 'cqu', 'AUR62043466' => 'cqu', 'BcaB02g10748' => 'bca', 'BcaB03g13231' => 'bca', 'BcaB03g14689' => 'bca', 'BcaB05g22716' => 'bca', 'BcaB06g28172' => 'bca', 'BcaB08g36413' => 'bca', 'BcaC01g02186' => 'bca', 'BcaC01g04272' => 'bca', 'BcaC02g08080' => 'bca', 'BcaC02g08227' => 'bca', 'BcaC03g13901' => 'bca', 'BcaC04g19593' => 'bca', 'BcaC04g20874' => 'bca', 'BcaC05g29557' => 'bca', 'BcaC06g35505' => 'bca', 'BcaC07g41954' => 'bca', 'BcaC07g41955' => 'bca', 'BcaC07g41956' => 'bca', 'BcaC07g42519' => 'bca', 'BcaC07g42520' => 'bca', 'BcaC07g42523' => 'bca', 'BcaC07g42524' => 'bca', 'BcaC07g42525' => 'bca', 'BcaC08g47480' => 'bca', 'BcaC08g47481' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00530' => 'bna', 'BolC2t07178H' => 'bol', 'BolC3t16567H' => 'bol', 'BolC4t27234H' => 'bol', 'BolC5t29728H' => 'bol', 'BolC5t34622H' => 'bol', 'BolC6t40321H' => 'bol', 'BolC7t42028H' => 'bol', 'BolC8t49125H' => 'bol', 'BolC8t52538H' => 'bol', 'BolC8t52539H' => 'bol', 'BolC9t56681H' => 'bol', 'BolC9t58266H' => 'bol', 'BolSC21t60294H' => 'bol', 'BraA02t05670Z' => 'bra', 'BraA03t12716Z' => 'bra', 'BraA04t17685Z' => 'bra', 'BraA05t22788Z' => 'bra', 'BraA06t24032Z' => 'bra', 'BraA06t25625Z' => 'bra', 'BraA07t27930Z' => 'bra', 'BraA08t35242Z' => 'bra', 'BraA09t38609Z' => 'bra', 'BraA10t43905Z' => 'bra', 'C02p11060' => 'bna', 'C03p42990' => 'bna', 'C03p67310' => 'bna', 'C04p56990' => 'bna', 'C04p58660' => 'bna', 'C05p09890' => 'bna', 'C05p59680' => 'bna', 'C06p19830' => 'bna', 'C06p53040' => 'bna', 'C07p15230' => 'bna', 'C08p50070' => 'bna', 'C08p50090' => 'bna', 'C09p38330' => 'bna', 'C09p53940' => 'bna', 'CAN.G1014.1' => 'can', 'CAN.G644.30' => 'can', 'CAN.G84.47' => 'can', 'CAN.G919.8' => 'can', 'CANSAT54G0113' => 'cansat', 'CANSAT54G1286' => 'cansat', 'CANSAT64G1020' => 'cansat', 'CARHR008080' => 'chi', 'CARHR008090' => 'chi', 'CARHR012130' => 'chi', 'CARHR038390' => 'chi', 'CARHR082330' => 'chi', 'CARHR120520' => 'chi', 'CARHR151470' => 'chi', 'CARHR190950' => 'chi', 'Carub.0001s0760' => 'cru', 'Carub.0001s1146' => 'cru', 'Carub.0003s0721' => 'cru', 'Carub.0004s0858' => 'cru', 'Carub.0005s1040' => 'cru', 'Carub.0006s2035' => 'cru', 'Carub.0015s0005' => 'cru', 'Ca_01607_v3' => 'car', 'Ca_01677_v3' => 'car', 'Ca_06087_v3' => 'car', 'Ca_19238_v3' => 'car', 'Ca_19373_v3' => 'car', 'Ca_21079_v3' => 'car', 'CBR_g54016' => 'cbr', 'CBR_g54018' => 'cbr', 'CBR_g54020' => 'cbr', 'Cc01_g09780' => 'ccan', 'Cc01_g11680' => 'ccan', 'Cc02_g15610' => 'ccan', 'Cc05_g04350' => 'ccan', 'Cc09_g01580' => 'ccan', 'CDE01G0795' => 'cde', 'CDE02G2024' => 'cde', 'CDE02G2260' => 'cde', 'CDE02G4561' => 'cde', 'CDE05G2733' => 'cde', 'CDE05G3422' => 'cde', 'CDE06G2003' => 'cde', 'CDE08G0576' => 'cde', 'CDE09G0048' => 'cde', 'CDE11G0805' => 'cde', 'Cfa003644' => 'cfa', 'Cfa006290' => 'cfa', 'Cfa010080' => 'cfa', 'Cfa011376' => 'cfa', 'Cfa011576' => 'cfa', 'Cfa011577' => 'cfa', 'Cfa014389' => 'cfa', 'Ciclev10006044m.g' => 'ccl', 'Ciclev10006954m.g' => 'ccl', 'Ciclev10015131m.g' => 'ccl', 'Ciclev10015580m.g' => 'ccl', 'Ciclev10028359m.g' => 'ccl', 'Ciclev10028573m.g' => 'ccl', 'CiPaw.03G159300' => 'cil', 'CiPaw.04G115100' => 'cil', 'CiPaw.09G092800' => 'cil', 'CiPaw.10G071800' => 'cil', 'CiPaw.13G105800' => 'cil', 'CiPaw.13G141000' => 'cil', 'CiPaw.14G103400' => 'cil', 'ClCG01G012700' => 'cla', 'ClCG01G012720' => 'cla', 'ClCG01G021920' => 'cla', 'ClCG02G008870' => 'cla', 'ClCG02G020840' => 'cla', 'ClCG02G021930' => 'cla', 'COL.COLO4_19302' => 'col', 'COL.COLO4_25262' => 'col', 'COL.COLO4_31788' => 'col', 'Cpa.g.c34684' => 'cpa', 'Cpa.g.c36520.1' => 'cpa', 'Cpa.g.c45626' => 'cpa', 'Cpa.g.sc121.17' => 'cpa', 'Cpa.g.sc13.22' => 'cpa', 'Cpa.g.sc87.88' => 'cpa', 'Cre06.g261800' => 'cre', 'CsaV3_1G014500' => 'csa', 'CsaV3_1G014510' => 'csa', 'CsaV3_2G034880' => 'csa', 'CsaV3_6G014760' => 'csa', 'CsaV3_6G021500' => 'csa', 'CsaV3_6G048980' => 'csa', 'CSS0002511' => 'camsi', 'CSS0007556' => 'camsi', 'CSS0008532' => 'camsi', 'CSS0009709' => 'camsi', 'CSS0010486' => 'camsi', 'CSS0016768' => 'camsi', 'CSS0023512' => 'camsi', 'CSS0025341' => 'camsi', 'CSS0027999' => 'camsi', 'CSS0028944' => 'camsi', 'CSS0032292' => 'camsi', 'CSS0032464' => 'camsi', 'CSS0037153' => 'camsi', 'CSS0039256' => 'camsi', 'CSS0048392' => 'camsi', 'CSS0050458' => 'camsi', 'DCAR_004224' => 'dca', 'DCAR_006147' => 'dca', 'DCAR_006465' => 'dca', 'DCAR_008159' => 'dca', 'DCAR_012164' => 'dca', 'DCAR_019764' => 'dca', 'Dinv05418' => 'din', 'Dinv10839' => 'din', 'Dinv12521' => 'din', 'Dinv13900' => 'din', 'Dinv29426' => 'din', 'Duzib150G0263' => 'dzi', 'Duzib168G1178' => 'dzi', 'Duzib168G1924' => 'dzi', 'Duzib170G0299' => 'dzi', 'Duzib170G0813' => 'dzi', 'Duzib235G1128' => 'dzi', 'Duzib248G1060' => 'dzi', 'ECA232G1910' => 'eca', 'ECA233G4621' => 'eca', 'ECA238G1216' => 'eca', 'ECA238G1784' => 'eca', 'ECA248G1242' => 'eca', 'EL10Ac8g20071' => 'bvu', 'EL10Ac9g21086' => 'bvu', 'EL10Ac9g22407' => 'bvu', 'EL10Ac9g22412' => 'bvu', 'Eucgr.A01119' => 'egr', 'Eucgr.E04043' => 'egr', 'Eucgr.J00428' => 'egr', 'Eucgr.J00958' => 'egr', 'FAN11G3091' => 'fan', 'FAN11G3651' => 'fan', 'FAN16G2566' => 'fan', 'FAN21G3155' => 'fan', 'FAN21G3400' => 'fan', 'FAN21G3543' => 'fan', 'FAN25G0234' => 'fan', 'FAN25G1422' => 'fan', 'FAN25G3392' => 'fan', 'FvH4_3g01940' => 'fve', 'FvH4_3g29870' => 'fve', 'FvH4_3g33680' => 'fve', 'Glyma.09G004200' => 'gma', 'Glyma.11G151288' => 'gma', 'Glyma.11G189100' => 'gma', 'Glyma.12G072500' => 'gma', 'Glyma.12G085500' => 'gma', 'Glyma.12G181800' => 'gma', 'Glyma.12G193000' => 'gma', 'Glyma.13G309300' => 'gma', 'Glyma.13G319000' => 'gma', 'Glyma.17G012600' => 'gma', 'Gohir.A06G148600' => 'ghi', 'Gohir.A07G115800' => 'ghi', 'Gohir.A08G003600' => 'ghi', 'Gohir.A09G093300' => 'ghi', 'Gohir.A09G105400' => 'ghi', 'Gohir.A09G105500' => 'ghi', 'Gohir.D06G154600' => 'ghi', 'Gohir.D07G120200' => 'ghi', 'Gohir.D08G013900' => 'ghi', 'Gohir.D09G093100' => 'ghi', 'Gohir.D09G102200' => 'ghi', 'Gohir.D09G102300' => 'ghi', 'Gorai.001G129400' => 'gra', 'Gorai.004G008200' => 'gra', 'Gorai.006G109800' => 'gra', 'Gorai.006G119500' => 'gra', 'Gorai.006G121300' => 'gra', 'Gorai.010G180700' => 'gra', 'GSVIVG01012716001' => 'vvi', 'GSVIVG01025118001' => 'vvi', 'GSVIVG01030439001' => 'vvi', 'GSVIVG01031397001' => 'vvi', 'HanXRQChr01g0004201' => 'han', 'HanXRQChr02g0054941' => 'han', 'HanXRQChr05g0141811' => 'han', 'HanXRQChr07g0197751' => 'han', 'HanXRQChr11g0346691' => 'han', 'HanXRQChr13g0396971' => 'han', 'HanXRQChr14g0432951' => 'han', 'HanXRQChr14g0452001' => 'han', 'HanXRQChr15g0496681' => 'han', 'HanXRQChr17g0557491' => 'han', 'HanXRQChr17g0557501' => 'han', 'Haze_06809' => 'cav', 'Haze_12852' => 'cav', 'Haze_15850' => 'cav', 'Haze_23446' => 'cav', 'Haze_23942' => 'cav', 'Haze_23943' => 'cav', 'Hma1.2p1_0091F.1_g046450' => 'hma', 'Hma1.2p1_0128F.1_g059910' => 'hma', 'Hma1.2p1_0249F.1_g102260' => 'hma', 'Hma1.2p1_0453F.1_g156190' => 'hma', 'Hma1.2p1_0695F.1_g204380' => 'hma', 'Hma1.2p1_0749F.1_g212650' => 'hma', 'Hma1.2p1_2156F.1_g315420' => 'hma', 'Hma1.2p1_2686F.1_g326940' => 'hma', 'HPP92_006428' => 'vpl', 'HPP92_012069' => 'vpl', 'HPP92_014129' => 'vpl', 'HPP92_014133' => 'vpl', 'HPP92_017315' => 'vpl', 'HPP92_026445' => 'vpl', 'HPP92_026446' => 'vpl', 'Hund00774' => 'sun', 'Hund07682' => 'sun', 'Hund21413' => 'sun', 'Hund23462' => 'sun', 'Hund23463' => 'sun', 'Lalb_Chr03g0027911' => 'lal', 'Lalb_Chr13g0304271' => 'lal', 'Lalb_Chr19g0137471' => 'lal', 'Lalb_Chr22g0350651' => 'lal', 'Lalb_Chr24g0395151' => 'lal', 'Lj1A1231T40' => 'lonja', 'Lj1A221T48' => 'lonja', 'Lj1C924T12' => 'lonja', 'Lj2C993G6' => 'lonja', 'Lj3g0005790' => 'lja', 'Lj3g0015432' => 'lja', 'Lj3g0017722' => 'lja', 'Lj3g0018497' => 'lja', 'Lj4g0025071' => 'lja', 'Lsat_1_v5_gn_1_129680' => 'lsa', 'Lsat_1_v5_gn_2_25321' => 'lsa', 'Lsat_1_v5_gn_2_95461' => 'lsa', 'Lsat_1_v5_gn_4_159620' => 'lsa', 'Lsat_1_v5_gn_6_41301' => 'lsa', 'Lsat_1_v5_gn_6_74660' => 'lsa', 'Lsat_1_v5_gn_7_11520' => 'lsa', 'Lsat_1_v5_gn_9_67680' => 'lsa', 'Manes.04G008300' => 'mes', 'Manes.04G008400' => 'mes', 'Manes.04G026500' => 'mes', 'Manes.10G135300' => 'mes', 'Manes.11G157300' => 'mes', 'Manes.12G074000' => 'mes', 'Manes.16G006200' => 'mes', 'Manes.17G026400' => 'mes', 'Mapoly0024s0086' => 'mpo', 'Mapoly0024s0087' => 'mpo', 'Mapoly0071s0057' => 'mpo', 'Mapoly0204s0012' => 'mpo', 'MBI04_g37681_MAGBIO' => 'mbi', 'MBI05_g17779_MAGBIO' => 'mbi', 'MBI12_g31184_MAGBIO' => 'mbi', 'MBI17_g11083_MAGBIO' => 'mbi', 'MBI18_g03883_MAGBIO' => 'mbi', 'MBI18_g28940_MAGBIO' => 'mbi', 'MCO01G690' => 'mco', 'MD03G1109900' => 'mdo', 'MD03G1134800' => 'mdo', 'MD05G1348000' => 'mdo', 'MD10G1322400' => 'mdo', 'MD11G1123300' => 'mdo', 'MD11G1157600' => 'mdo', 'Medtr2g084875' => 'mtr', 'Medtr2g088130' => 'mtr', 'Medtr4g055310' => 'mtr', 'Medtr4g061070' => 'mtr', 'Medtr4g132250' => 'mtr', 'MELO3C004795.2' => 'cme', 'MELO3C004797.2' => 'cme', 'MELO3C007396.2' => 'cme', 'MELO3C019277.2' => 'cme', 'MELO3C021449.2' => 'cme', 'MELO3C025736.2' => 'cme', 'Migut.D02175' => 'egut', 'Migut.H01573' => 'egut', 'Migut.M01327' => 'egut', 'Migut.N02513' => 'egut', 'MSTRG.14638' => 'ama', 'MSTRG.18632' => 'ama', 'MSTRG.7203' => 'ama', 'Nitab4.5_0000533g0140' => 'nta', 'Nitab4.5_0000888g0150' => 'nta', 'Nitab4.5_0001453g0040' => 'nta', 'Nitab4.5_0002827g0090' => 'nta', 'Nitab4.5_0003082g0040' => 'nta', 'Nitab4.5_0007799g0040' => 'nta', 'Nitab4.5_0008983g0010' => 'nta', 'Nitab4.5_0009017g0020' => 'nta', 'Nn1g02132' => 'nnu', 'Nn1g03492' => 'nnu', 'Nn1g03493' => 'nnu', 'Nn1g03494' => 'nnu', 'Nn1g07164' => 'nnu', 'Nn1g07291' => 'nnu', 'Nn2g10655' => 'nnu', 'Nn2g11652' => 'nnu', 'Nn2g14008' => 'nnu', 'Nn3g17476' => 'nnu', 'Nn3g17477' => 'nnu', 'Nn4g22370' => 'nnu', 'Nn4g25255' => 'nnu', 'Nn5g27755' => 'nnu', 'Nn6g34260' => 'nnu', 'Nn6g35041' => 'nnu', 'Oeu005924.1' => 'oeu', 'Oeu008383.1' => 'oeu', 'Oeu014928.1' => 'oeu', 'Oeu019889.1' => 'oeu', 'Oeu022271.1' => 'oeu', 'Oeu025271.1' => 'oeu', 'Oeu036302.1' => 'oeu', 'Oeu044100.1' => 'oeu', 'Os01g0528300' => 'osa', 'Os03g0286200' => 'osa', 'Os04g0406600' => 'osa', 'Os07g0512000' => 'osa', 'Os07g0694600' => 'osa', 'Os08g0411000' => 'osa', 'Os09g0565700' => 'osa', 'Os09g0566050' => 'osa', 'Os10g0523700' => 'osa', 'Peaxi162Scf00002g00514' => 'pax', 'Peaxi162Scf00047g01817' => 'pax', 'Peaxi162Scf00114g00001' => 'pax', 'Peaxi162Scf00147g00613' => 'pax', 'Peaxi162Scf00389g00425' => 'pax', 'PGR042G1139' => 'pgr', 'PGR042G3273' => 'pgr', 'PGR102G2180' => 'pgr', 'PGR119G0234' => 'pgr', 'PGR119G0668' => 'pgr', 'PGSC0003DMG400007122' => 'stu', 'PGSC0003DMG400016478' => 'stu', 'PGSC0003DMG400025374' => 'stu', 'PGSC0003DMG400026536' => 'stu', 'Phvul.003G079600' => 'pvu', 'Phvul.005G115600' => 'pvu', 'Phvul.005G127100' => 'pvu', 'Phvul.006G149500' => 'pvu', 'Phvul.006G149600' => 'pvu', 'Phvul.011G071800' => 'pvu', 'Phvul.011G090400' => 'pvu', 'Potri.004G013400' => 'ptr', 'Potri.004G188100' => 'ptr', 'Potri.008G195500' => 'ptr', 'Potri.009G148800' => 'ptr', 'Potri.011G004700' => 'ptr', 'Pp3c17_22810' => 'ppa', 'Pp3c18_4480' => 'ppa', 'Pp3c19_13030' => 'ppa', 'Pp3c1_33620' => 'ppa', 'Pp3c2_9380' => 'ppa', 'PRCOL_00001023' => 'pco', 'Prupe.3G216300' => 'ppe', 'Prupe.4G019500' => 'ppe', 'Prupe.6G092500' => 'ppe', 'Prupe.6G119200' => 'ppe', 'Psat0s1945g0080' => 'psa', 'Psat0s4167g0040' => 'psa', 'Psat1g185800' => 'psa', 'Psat4g006440' => 'psa', 'Psat4g006480' => 'psa', 'Psat4g168120' => 'psa', 'Psat5g255680' => 'psa', 'Psat5g261760' => 'psa', 'Psat7g222120' => 'psa', 'PSO063G7252' => 'pso', 'PSO170G4778' => 'pso', 'PSO210G2249' => 'pso', 'PSO339G2411' => 'pso', 'PSO339G2457' => 'pso', 'PSO339G2854' => 'pso', 'PSO339G4288' => 'pso', 'PSO339G4615' => 'pso', 'PSO384G2796' => 'pso', 'PSO384G2940' => 'pso', 'PSO384G4227' => 'pso', 'PSO478G1425' => 'pso', 'PSO541G3863' => 'pso', 'PSO675G0507' => 'pso', 'PSO782G0338' => 'pso', 'PSO832G0644' => 'pso', 'QL01p013664' => 'qlo', 'QL01p036598' => 'qlo', 'QL05p072984' => 'qlo', 'QL08p005768' => 'qlo', 'QL08p032743' => 'qlo', 'QL93p0073_0439' => 'qlo', 'QL93p0073_0444' => 'qlo', 'RcHm_v2.0_Chr5g0002851' => 'rch', 'RcHm_v2.0_Chr5g0055201' => 'rch', 'RcHm_v2.0_Chr5g0061191' => 'rch', 'RcHm_v2.0_Chr7g0203231' => 'rch', 'Rhsim01G0208100' => 'rsi', 'Rhsim01G0208200' => 'rsi', 'Rhsim02G0106500' => 'rsi', 'Rhsim03G0107900' => 'rsi', 'Rhsim06G0163400' => 'rsi', 'Rhsim13G0105200' => 'rsi', 'Sabra04G0006300' => 'sbr', 'Sabra04G0127000' => 'sbr', 'Sabra08G0148700' => 'sbr', 'Sabra09G0117400' => 'sbr', 'SalBow1G3326' => 'sbo', 'SalBow3G3228' => 'sbo', 'SalBow6G1634' => 'sbo', 'SalBow6G3603' => 'sbo', 'SalBow6G5266' => 'sbo', 'SalBow7G2265' => 'sbo', 'SalBow8G0850' => 'sbo', 'SalBow8G2592' => 'sbo', 'Sc05g0009240' => 'sci', 'Sc12g0002300' => 'sci', 'Sc21g0000100' => 'sci', 'Sc21g0004720' => 'sci', 'Sed0002949' => 'sed', 'Sed0004114' => 'sed', 'Sed0004306' => 'sed', 'Sed0006172' => 'sed', 'Sed0008413' => 'sed', 'Sed0013809' => 'sed', 'Sed0019556' => 'sed', 'SEGI_03570' => 'sgi', 'SEGI_07859' => 'sgi', 'SEGI_15042' => 'sgi', 'SEGI_16263' => 'sgi', 'SEGI_16552' => 'sgi', 'SEGI_24331' => 'sgi', 'SEGI_27316' => 'sgi', 'SEGI_29521' => 'sgi', 'SEGI_41342' => 'sgi', 'SGA_v2.0_scaffold27G11617' => 'sas', 'SGA_v2.0_scaffold316G48428' => 'sas', 'SGA_v2.0_scaffold49G18261' => 'sas', 'SGA_v2.0_scaffold7G03831' => 'sas', 'SGA_v2.0_scaffold93G28359' => 'sas', 'SHI02210' => 'shi', 'SHI06028' => 'shi', 'SHI06321' => 'shi', 'SMO111G0012' => 'smo', 'SMO228G0080' => 'smo', 'SMO356G0756' => 'smo', 'Solyc02g080620.3' => 'sly', 'Solyc06g074530.1' => 'sly', 'Solyc11g066890.1' => 'sly', 'Solyc11g072520.3' => 'sly', 'Sopen02g025330' => 'spe', 'Sopen06g031000' => 'spe', 'Sopen09g008240' => 'spe', 'Sopen09g025210' => 'spe', 'Sopen11g026600' => 'spe', 'Sopen11g030170' => 'spe', 'Sp1g10420' => 'spa', 'Sp3g06570' => 'spa', 'Sp4g10660' => 'spa', 'Sp5g16460' => 'spa', 'Sp6g22710' => 'spa', 'TAR365G0112' => 'tar', 'TAR369G0717' => 'tar', 'TAR374G0976' => 'tar', 'TAR623G1128' => 'tar', 'TAR626G1937' => 'tar', 'TAR627G0123' => 'tar', 'TAR628G0305' => 'tar', 'TAR636G1176' => 'tar', 'TAR636G2442' => 'tar', 'THA.LOC104800556' => 'tha', 'THA.LOC104809501' => 'tha', 'THA.LOC104815126' => 'tha', 'THA.LOC104815732' => 'tha', 'THA.LOC104823528' => 'tha', 'Thecc.02G365600' => 'tca', 'Thecc.06G222300' => 'tca', 'Thecc.09G261800' => 'tca', 'Thecc.09G291400' => 'tca', 'Thhalv10003028m.g' => 'esa', 'Thhalv10007886m.g' => 'esa', 'Thhalv10016085m.g' => 'esa', 'Thhalv10016681m.g' => 'esa', 'Thhalv10020951m.g' => 'esa', 'TPR.G15598' => 'tpr', 'TPR.G29305' => 'tpr', 'TPR.G32395' => 'tpr', 'TPR.G36998' => 'tpr', 'TPR.G4227' => 'tpr', 'TWI18G1433' => 'twi', 'TWI31G0755' => 'twi', 'TWI38G0912' => 'twi', 'TWI75G1097' => 'twi', 'TWI75G1619' => 'twi', 'TWI79G1336' => 'twi', 'unitig_0.g943' => 'ugi', 'unitig_0.g944' => 'ugi', 'unitig_22.g6646' => 'ugi', 'unitig_37.g12681' => 'ugi', 'unitig_8.g3290' => 'ugi', 'vmacro03278' => 'vma', 'vmacro12197' => 'vma', 'vmacro14478' => 'vma', 'vmacro15787' => 'vma', 'vmacro15789' => 'vma', 'vmacro15790' => 'vma', 'vmacro15806' => 'vma', 'vmacro22907' => 'vma', 'vmacro22908' => 'vma', 'vmacro22909' => 'vma', 'vmacro23108' => 'vma', 'VMungo0540G0540' => 'vmu', 'VMungo0540G2468' => 'vmu', 'VMungo1080G0390' => 'vmu', 'VMungo1080G1165' => 'vmu', 'VMungo1127G0170' => 'vmu', 'VMungo1127G2099' => 'vmu', 'VMungo1215G3013' => 'vmu', 'Zm00001eb013110' => 'zma', 'Zm00001eb084260' => 'zma', 'Zm00001eb096110' => 'zma', 'Zm00001eb217510' => 'zma', 'Zm00001eb322550' => 'zma', 'Zm00001eb390770' => 'zma', 'Zm00001eb397170' => 'zma', 'Zm00001eb404610' => 'zma', 'Zm00001eb421790' => 'zma' ) $gf_id = 'HOM05D000911' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000911' ) $data_identifier = 'HOM05D000911' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 16, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 5, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 6, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 8, 'nnu' => (int) 16, 'oeu' => (int) 8, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 5, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 16, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421790' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000911', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27780' => 'bna', 'A03p35380' => 'bna', 'A04p21160' => 'bna', 'A05p40570' => 'bna', 'A06p26900' => 'bna', 'A08p33230' => 'bna', 'A09p65960' => 'bna', 'A10p18290' => 'bna', 'Aa31LG1G12990' => 'aar', 'Aa31LG1G2980' => 'aar', 'Aa31LG4G14320' => 'aar', 'Aa31LG7G11800' => 'aar', 'Aa31sc36G50' => 'aar', 'Aa31sc36G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3721' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5459' => 'aag', 'Actinidia03028' => 'ach', 'Actinidia03753' => 'ach', 'Actinidia04187' => 'ach', 'Actinidia05509' => 'ach', 'Actinidia24180' => 'ach', 'Actinidia26906' => 'ach', 'Actinidia37097' => 'ach', 'Actinidia38249' => 'ach', 'Ah.01g003470' => 'amhyb', 'Ah.01g004580' => 'amhyb', 'Ah.01g014850' => 'amhyb', 'Ah.01g016830' => 'amhyb', 'Ah.14g088000' => 'amhyb', 'AL1G22980' => 'aly', 'AL3G18990' => 'aly', 'AL4G22440' => 'aly', 'AL4G33180' => 'aly', 'AL5G22920' => 'aly', 'AL6G33660' => 'aly', 'AL8G20720' => 'aly', 'Aqoxy1G00935' => 'aox', 'Aqoxy1G02094' => 'aox', 'Aqoxy2G01239' => 'aox', 'Aqoxy4G01870' => 'aox', 'Aqoxy7G00450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.36ZVTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71EM27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5D6C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH3WRE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3NCM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RIM768' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YB5YRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z36GDV' => 'arhy', 'AT1G08250' => 'ath', 'AT1G11790' => 'ath', 'AT2G27820' => 'ath', 'AT3G07630' => 'ath', 'AT3G44720' => 'ath', 'AT5G22630' => 'ath', 'ATR0693G304' => 'atr', 'ATR0794G109' => 'atr', 'ATR0820G120' => 'atr', 'ATR1159G064' => 'atr', 'Atru.chr10.2239' => 'acertr', 'Atru.chr3.3371' => 'acertr', 'Atru.chr6.3202' => 'acertr', 'AUR62006499' => 'cqu', 'AUR62012718' => 'cqu', 'AUR62021938' => 'cqu', 'AUR62023932' => 'cqu', 'AUR62025034' => 'cqu', 'AUR62025035' => 'cqu', 'AUR62038307' => 'cqu', 'AUR62043466' => 'cqu', 'BcaB02g10748' => 'bca', 'BcaB03g13231' => 'bca', 'BcaB03g14689' => 'bca', 'BcaB05g22716' => 'bca', 'BcaB06g28172' => 'bca', 'BcaB08g36413' => 'bca', 'BcaC01g02186' => 'bca', 'BcaC01g04272' => 'bca', 'BcaC02g08080' => 'bca', 'BcaC02g08227' => 'bca', 'BcaC03g13901' => 'bca', 'BcaC04g19593' => 'bca', 'BcaC04g20874' => 'bca', 'BcaC05g29557' => 'bca', 'BcaC06g35505' => 'bca', 'BcaC07g41954' => 'bca', 'BcaC07g41955' => 'bca', 'BcaC07g41956' => 'bca', 'BcaC07g42519' => 'bca', 'BcaC07g42520' => 'bca', 'BcaC07g42523' => 'bca', 'BcaC07g42524' => 'bca', 'BcaC07g42525' => 'bca', 'BcaC08g47480' => 'bca', 'BcaC08g47481' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00530' => 'bna', 'BolC2t07178H' => 'bol', 'BolC3t16567H' => 'bol', 'BolC4t27234H' => 'bol', 'BolC5t29728H' => 'bol', 'BolC5t34622H' => 'bol', 'BolC6t40321H' => 'bol', 'BolC7t42028H' => 'bol', 'BolC8t49125H' => 'bol', 'BolC8t52538H' => 'bol', 'BolC8t52539H' => 'bol', 'BolC9t56681H' => 'bol', 'BolC9t58266H' => 'bol', 'BolSC21t60294H' => 'bol', 'BraA02t05670Z' => 'bra', 'BraA03t12716Z' => 'bra', 'BraA04t17685Z' => 'bra', 'BraA05t22788Z' => 'bra', 'BraA06t24032Z' => 'bra', 'BraA06t25625Z' => 'bra', 'BraA07t27930Z' => 'bra', 'BraA08t35242Z' => 'bra', 'BraA09t38609Z' => 'bra', 'BraA10t43905Z' => 'bra', 'C02p11060' => 'bna', 'C03p42990' => 'bna', 'C03p67310' => 'bna', 'C04p56990' => 'bna', 'C04p58660' => 'bna', 'C05p09890' => 'bna', 'C05p59680' => 'bna', 'C06p19830' => 'bna', 'C06p53040' => 'bna', 'C07p15230' => 'bna', 'C08p50070' => 'bna', 'C08p50090' => 'bna', 'C09p38330' => 'bna', 'C09p53940' => 'bna', 'CAN.G1014.1' => 'can', 'CAN.G644.30' => 'can', 'CAN.G84.47' => 'can', 'CAN.G919.8' => 'can', 'CANSAT54G0113' => 'cansat', 'CANSAT54G1286' => 'cansat', 'CANSAT64G1020' => 'cansat', 'CARHR008080' => 'chi', 'CARHR008090' => 'chi', 'CARHR012130' => 'chi', 'CARHR038390' => 'chi', 'CARHR082330' => 'chi', 'CARHR120520' => 'chi', 'CARHR151470' => 'chi', 'CARHR190950' => 'chi', 'Carub.0001s0760' => 'cru', 'Carub.0001s1146' => 'cru', 'Carub.0003s0721' => 'cru', 'Carub.0004s0858' => 'cru', 'Carub.0005s1040' => 'cru', 'Carub.0006s2035' => 'cru', 'Carub.0015s0005' => 'cru', 'Ca_01607_v3' => 'car', 'Ca_01677_v3' => 'car', 'Ca_06087_v3' => 'car', 'Ca_19238_v3' => 'car', 'Ca_19373_v3' => 'car', 'Ca_21079_v3' => 'car', 'CBR_g54016' => 'cbr', 'CBR_g54018' => 'cbr', 'CBR_g54020' => 'cbr', 'Cc01_g09780' => 'ccan', 'Cc01_g11680' => 'ccan', 'Cc02_g15610' => 'ccan', 'Cc05_g04350' => 'ccan', 'Cc09_g01580' => 'ccan', 'CDE01G0795' => 'cde', 'CDE02G2024' => 'cde', 'CDE02G2260' => 'cde', 'CDE02G4561' => 'cde', 'CDE05G2733' => 'cde', 'CDE05G3422' => 'cde', 'CDE06G2003' => 'cde', 'CDE08G0576' => 'cde', 'CDE09G0048' => 'cde', 'CDE11G0805' => 'cde', 'Cfa003644' => 'cfa', 'Cfa006290' => 'cfa', 'Cfa010080' => 'cfa', 'Cfa011376' => 'cfa', 'Cfa011576' => 'cfa', 'Cfa011577' => 'cfa', 'Cfa014389' => 'cfa', 'Ciclev10006044m.g' => 'ccl', 'Ciclev10006954m.g' => 'ccl', 'Ciclev10015131m.g' => 'ccl', 'Ciclev10015580m.g' => 'ccl', 'Ciclev10028359m.g' => 'ccl', 'Ciclev10028573m.g' => 'ccl', 'CiPaw.03G159300' => 'cil', 'CiPaw.04G115100' => 'cil', 'CiPaw.09G092800' => 'cil', 'CiPaw.10G071800' => 'cil', 'CiPaw.13G105800' => 'cil', 'CiPaw.13G141000' => 'cil', 'CiPaw.14G103400' => 'cil', 'ClCG01G012700' => 'cla', 'ClCG01G012720' => 'cla', 'ClCG01G021920' => 'cla', 'ClCG02G008870' => 'cla', 'ClCG02G020840' => 'cla', 'ClCG02G021930' => 'cla', 'COL.COLO4_19302' => 'col', 'COL.COLO4_25262' => 'col', 'COL.COLO4_31788' => 'col', 'Cpa.g.c34684' => 'cpa', 'Cpa.g.c36520.1' => 'cpa', 'Cpa.g.c45626' => 'cpa', 'Cpa.g.sc121.17' => 'cpa', 'Cpa.g.sc13.22' => 'cpa', 'Cpa.g.sc87.88' => 'cpa', 'Cre06.g261800' => 'cre', 'CsaV3_1G014500' => 'csa', 'CsaV3_1G014510' => 'csa', 'CsaV3_2G034880' => 'csa', 'CsaV3_6G014760' => 'csa', 'CsaV3_6G021500' => 'csa', 'CsaV3_6G048980' => 'csa', 'CSS0002511' => 'camsi', 'CSS0007556' => 'camsi', 'CSS0008532' => 'camsi', 'CSS0009709' => 'camsi', 'CSS0010486' => 'camsi', 'CSS0016768' => 'camsi', 'CSS0023512' => 'camsi', 'CSS0025341' => 'camsi', 'CSS0027999' => 'camsi', 'CSS0028944' => 'camsi', 'CSS0032292' => 'camsi', 'CSS0032464' => 'camsi', 'CSS0037153' => 'camsi', 'CSS0039256' => 'camsi', 'CSS0048392' => 'camsi', 'CSS0050458' => 'camsi', 'DCAR_004224' => 'dca', 'DCAR_006147' => 'dca', 'DCAR_006465' => 'dca', 'DCAR_008159' => 'dca', 'DCAR_012164' => 'dca', 'DCAR_019764' => 'dca', 'Dinv05418' => 'din', 'Dinv10839' => 'din', 'Dinv12521' => 'din', 'Dinv13900' => 'din', 'Dinv29426' => 'din', 'Duzib150G0263' => 'dzi', 'Duzib168G1178' => 'dzi', 'Duzib168G1924' => 'dzi', 'Duzib170G0299' => 'dzi', 'Duzib170G0813' => 'dzi', 'Duzib235G1128' => 'dzi', 'Duzib248G1060' => 'dzi', 'ECA232G1910' => 'eca', 'ECA233G4621' => 'eca', 'ECA238G1216' => 'eca', 'ECA238G1784' => 'eca', 'ECA248G1242' => 'eca', 'EL10Ac8g20071' => 'bvu', 'EL10Ac9g21086' => 'bvu', 'EL10Ac9g22407' => 'bvu', 'EL10Ac9g22412' => 'bvu', 'Eucgr.A01119' => 'egr', 'Eucgr.E04043' => 'egr', 'Eucgr.J00428' => 'egr', 'Eucgr.J00958' => 'egr', 'FAN11G3091' => 'fan', 'FAN11G3651' => 'fan', 'FAN16G2566' => 'fan', 'FAN21G3155' => 'fan', 'FAN21G3400' => 'fan', 'FAN21G3543' => 'fan', 'FAN25G0234' => 'fan', 'FAN25G1422' => 'fan', 'FAN25G3392' => 'fan', 'FvH4_3g01940' => 'fve', 'FvH4_3g29870' => 'fve', 'FvH4_3g33680' => 'fve', 'Glyma.09G004200' => 'gma', 'Glyma.11G151288' => 'gma', 'Glyma.11G189100' => 'gma', 'Glyma.12G072500' => 'gma', 'Glyma.12G085500' => 'gma', 'Glyma.12G181800' => 'gma', 'Glyma.12G193000' => 'gma', 'Glyma.13G309300' => 'gma', 'Glyma.13G319000' => 'gma', 'Glyma.17G012600' => 'gma', 'Gohir.A06G148600' => 'ghi', 'Gohir.A07G115800' => 'ghi', 'Gohir.A08G003600' => 'ghi', 'Gohir.A09G093300' => 'ghi', 'Gohir.A09G105400' => 'ghi', 'Gohir.A09G105500' => 'ghi', 'Gohir.D06G154600' => 'ghi', 'Gohir.D07G120200' => 'ghi', 'Gohir.D08G013900' => 'ghi', 'Gohir.D09G093100' => 'ghi', 'Gohir.D09G102200' => 'ghi', 'Gohir.D09G102300' => 'ghi', 'Gorai.001G129400' => 'gra', 'Gorai.004G008200' => 'gra', 'Gorai.006G109800' => 'gra', 'Gorai.006G119500' => 'gra', 'Gorai.006G121300' => 'gra', 'Gorai.010G180700' => 'gra', 'GSVIVG01012716001' => 'vvi', 'GSVIVG01025118001' => 'vvi', 'GSVIVG01030439001' => 'vvi', 'GSVIVG01031397001' => 'vvi', 'HanXRQChr01g0004201' => 'han', 'HanXRQChr02g0054941' => 'han', 'HanXRQChr05g0141811' => 'han', 'HanXRQChr07g0197751' => 'han', 'HanXRQChr11g0346691' => 'han', 'HanXRQChr13g0396971' => 'han', 'HanXRQChr14g0432951' => 'han', 'HanXRQChr14g0452001' => 'han', 'HanXRQChr15g0496681' => 'han', 'HanXRQChr17g0557491' => 'han', 'HanXRQChr17g0557501' => 'han', 'Haze_06809' => 'cav', 'Haze_12852' => 'cav', 'Haze_15850' => 'cav', 'Haze_23446' => 'cav', 'Haze_23942' => 'cav', 'Haze_23943' => 'cav', 'Hma1.2p1_0091F.1_g046450' => 'hma', 'Hma1.2p1_0128F.1_g059910' => 'hma', 'Hma1.2p1_0249F.1_g102260' => 'hma', 'Hma1.2p1_0453F.1_g156190' => 'hma', 'Hma1.2p1_0695F.1_g204380' => 'hma', 'Hma1.2p1_0749F.1_g212650' => 'hma', 'Hma1.2p1_2156F.1_g315420' => 'hma', 'Hma1.2p1_2686F.1_g326940' => 'hma', 'HPP92_006428' => 'vpl', 'HPP92_012069' => 'vpl', 'HPP92_014129' => 'vpl', 'HPP92_014133' => 'vpl', 'HPP92_017315' => 'vpl', 'HPP92_026445' => 'vpl', 'HPP92_026446' => 'vpl', 'Hund00774' => 'sun', 'Hund07682' => 'sun', 'Hund21413' => 'sun', 'Hund23462' => 'sun', 'Hund23463' => 'sun', 'Lalb_Chr03g0027911' => 'lal', 'Lalb_Chr13g0304271' => 'lal', 'Lalb_Chr19g0137471' => 'lal', 'Lalb_Chr22g0350651' => 'lal', 'Lalb_Chr24g0395151' => 'lal', 'Lj1A1231T40' => 'lonja', 'Lj1A221T48' => 'lonja', 'Lj1C924T12' => 'lonja', 'Lj2C993G6' => 'lonja', 'Lj3g0005790' => 'lja', 'Lj3g0015432' => 'lja', 'Lj3g0017722' => 'lja', 'Lj3g0018497' => 'lja', 'Lj4g0025071' => 'lja', 'Lsat_1_v5_gn_1_129680' => 'lsa', 'Lsat_1_v5_gn_2_25321' => 'lsa', 'Lsat_1_v5_gn_2_95461' => 'lsa', 'Lsat_1_v5_gn_4_159620' => 'lsa', 'Lsat_1_v5_gn_6_41301' => 'lsa', 'Lsat_1_v5_gn_6_74660' => 'lsa', 'Lsat_1_v5_gn_7_11520' => 'lsa', 'Lsat_1_v5_gn_9_67680' => 'lsa', 'Manes.04G008300' => 'mes', 'Manes.04G008400' => 'mes', 'Manes.04G026500' => 'mes', 'Manes.10G135300' => 'mes', 'Manes.11G157300' => 'mes', 'Manes.12G074000' => 'mes', 'Manes.16G006200' => 'mes', 'Manes.17G026400' => 'mes', 'Mapoly0024s0086' => 'mpo', 'Mapoly0024s0087' => 'mpo', 'Mapoly0071s0057' => 'mpo', 'Mapoly0204s0012' => 'mpo', 'MBI04_g37681_MAGBIO' => 'mbi', 'MBI05_g17779_MAGBIO' => 'mbi', 'MBI12_g31184_MAGBIO' => 'mbi', 'MBI17_g11083_MAGBIO' => 'mbi', 'MBI18_g03883_MAGBIO' => 'mbi', 'MBI18_g28940_MAGBIO' => 'mbi', 'MCO01G690' => 'mco', 'MD03G1109900' => 'mdo', 'MD03G1134800' => 'mdo', 'MD05G1348000' => 'mdo', 'MD10G1322400' => 'mdo', 'MD11G1123300' => 'mdo', 'MD11G1157600' => 'mdo', 'Medtr2g084875' => 'mtr', 'Medtr2g088130' => 'mtr', 'Medtr4g055310' => 'mtr', 'Medtr4g061070' => 'mtr', 'Medtr4g132250' => 'mtr', 'MELO3C004795.2' => 'cme', 'MELO3C004797.2' => 'cme', 'MELO3C007396.2' => 'cme', 'MELO3C019277.2' => 'cme', 'MELO3C021449.2' => 'cme', 'MELO3C025736.2' => 'cme', 'Migut.D02175' => 'egut', 'Migut.H01573' => 'egut', 'Migut.M01327' => 'egut', 'Migut.N02513' => 'egut', 'MSTRG.14638' => 'ama', 'MSTRG.18632' => 'ama', 'MSTRG.7203' => 'ama', 'Nitab4.5_0000533g0140' => 'nta', 'Nitab4.5_0000888g0150' => 'nta', 'Nitab4.5_0001453g0040' => 'nta', 'Nitab4.5_0002827g0090' => 'nta', 'Nitab4.5_0003082g0040' => 'nta', 'Nitab4.5_0007799g0040' => 'nta', 'Nitab4.5_0008983g0010' => 'nta', 'Nitab4.5_0009017g0020' => 'nta', 'Nn1g02132' => 'nnu', 'Nn1g03492' => 'nnu', 'Nn1g03493' => 'nnu', 'Nn1g03494' => 'nnu', 'Nn1g07164' => 'nnu', 'Nn1g07291' => 'nnu', 'Nn2g10655' => 'nnu', 'Nn2g11652' => 'nnu', 'Nn2g14008' => 'nnu', 'Nn3g17476' => 'nnu', 'Nn3g17477' => 'nnu', 'Nn4g22370' => 'nnu', 'Nn4g25255' => 'nnu', 'Nn5g27755' => 'nnu', 'Nn6g34260' => 'nnu', 'Nn6g35041' => 'nnu', 'Oeu005924.1' => 'oeu', 'Oeu008383.1' => 'oeu', 'Oeu014928.1' => 'oeu', 'Oeu019889.1' => 'oeu', 'Oeu022271.1' => 'oeu', 'Oeu025271.1' => 'oeu', 'Oeu036302.1' => 'oeu', 'Oeu044100.1' => 'oeu', 'Os01g0528300' => 'osa', 'Os03g0286200' => 'osa', 'Os04g0406600' => 'osa', 'Os07g0512000' => 'osa', 'Os07g0694600' => 'osa', 'Os08g0411000' => 'osa', 'Os09g0565700' => 'osa', 'Os09g0566050' => 'osa', 'Os10g0523700' => 'osa', 'Peaxi162Scf00002g00514' => 'pax', 'Peaxi162Scf00047g01817' => 'pax', 'Peaxi162Scf00114g00001' => 'pax', 'Peaxi162Scf00147g00613' => 'pax', 'Peaxi162Scf00389g00425' => 'pax', 'PGR042G1139' => 'pgr', 'PGR042G3273' => 'pgr', 'PGR102G2180' => 'pgr', 'PGR119G0234' => 'pgr', 'PGR119G0668' => 'pgr', 'PGSC0003DMG400007122' => 'stu', 'PGSC0003DMG400016478' => 'stu', 'PGSC0003DMG400025374' => 'stu', 'PGSC0003DMG400026536' => 'stu', 'Phvul.003G079600' => 'pvu', 'Phvul.005G115600' => 'pvu', 'Phvul.005G127100' => 'pvu', 'Phvul.006G149500' => 'pvu', 'Phvul.006G149600' => 'pvu', 'Phvul.011G071800' => 'pvu', 'Phvul.011G090400' => 'pvu', 'Potri.004G013400' => 'ptr', 'Potri.004G188100' => 'ptr', 'Potri.008G195500' => 'ptr', 'Potri.009G148800' => 'ptr', 'Potri.011G004700' => 'ptr', 'Pp3c17_22810' => 'ppa', 'Pp3c18_4480' => 'ppa', 'Pp3c19_13030' => 'ppa', 'Pp3c1_33620' => 'ppa', 'Pp3c2_9380' => 'ppa', 'PRCOL_00001023' => 'pco', 'Prupe.3G216300' => 'ppe', 'Prupe.4G019500' => 'ppe', 'Prupe.6G092500' => 'ppe', 'Prupe.6G119200' => 'ppe', 'Psat0s1945g0080' => 'psa', 'Psat0s4167g0040' => 'psa', 'Psat1g185800' => 'psa', 'Psat4g006440' => 'psa', 'Psat4g006480' => 'psa', 'Psat4g168120' => 'psa', 'Psat5g255680' => 'psa', 'Psat5g261760' => 'psa', 'Psat7g222120' => 'psa', 'PSO063G7252' => 'pso', 'PSO170G4778' => 'pso', 'PSO210G2249' => 'pso', 'PSO339G2411' => 'pso', 'PSO339G2457' => 'pso', 'PSO339G2854' => 'pso', 'PSO339G4288' => 'pso', 'PSO339G4615' => 'pso', 'PSO384G2796' => 'pso', 'PSO384G2940' => 'pso', 'PSO384G4227' => 'pso', 'PSO478G1425' => 'pso', 'PSO541G3863' => 'pso', 'PSO675G0507' => 'pso', 'PSO782G0338' => 'pso', 'PSO832G0644' => 'pso', 'QL01p013664' => 'qlo', 'QL01p036598' => 'qlo', 'QL05p072984' => 'qlo', 'QL08p005768' => 'qlo', 'QL08p032743' => 'qlo', 'QL93p0073_0439' => 'qlo', 'QL93p0073_0444' => 'qlo', 'RcHm_v2.0_Chr5g0002851' => 'rch', 'RcHm_v2.0_Chr5g0055201' => 'rch', 'RcHm_v2.0_Chr5g0061191' => 'rch', 'RcHm_v2.0_Chr7g0203231' => 'rch', 'Rhsim01G0208100' => 'rsi', 'Rhsim01G0208200' => 'rsi', 'Rhsim02G0106500' => 'rsi', 'Rhsim03G0107900' => 'rsi', 'Rhsim06G0163400' => 'rsi', 'Rhsim13G0105200' => 'rsi', 'Sabra04G0006300' => 'sbr', 'Sabra04G0127000' => 'sbr', 'Sabra08G0148700' => 'sbr', 'Sabra09G0117400' => 'sbr', 'SalBow1G3326' => 'sbo', 'SalBow3G3228' => 'sbo', 'SalBow6G1634' => 'sbo', 'SalBow6G3603' => 'sbo', 'SalBow6G5266' => 'sbo', 'SalBow7G2265' => 'sbo', 'SalBow8G0850' => 'sbo', 'SalBow8G2592' => 'sbo', 'Sc05g0009240' => 'sci', 'Sc12g0002300' => 'sci', 'Sc21g0000100' => 'sci', 'Sc21g0004720' => 'sci', 'Sed0002949' => 'sed', 'Sed0004114' => 'sed', 'Sed0004306' => 'sed', 'Sed0006172' => 'sed', 'Sed0008413' => 'sed', 'Sed0013809' => 'sed', 'Sed0019556' => 'sed', 'SEGI_03570' => 'sgi', 'SEGI_07859' => 'sgi', 'SEGI_15042' => 'sgi', 'SEGI_16263' => 'sgi', 'SEGI_16552' => 'sgi', 'SEGI_24331' => 'sgi', 'SEGI_27316' => 'sgi', 'SEGI_29521' => 'sgi', 'SEGI_41342' => 'sgi', 'SGA_v2.0_scaffold27G11617' => 'sas', 'SGA_v2.0_scaffold316G48428' => 'sas', 'SGA_v2.0_scaffold49G18261' => 'sas', 'SGA_v2.0_scaffold7G03831' => 'sas', 'SGA_v2.0_scaffold93G28359' => 'sas', 'SHI02210' => 'shi', 'SHI06028' => 'shi', 'SHI06321' => 'shi', 'SMO111G0012' => 'smo', 'SMO228G0080' => 'smo', 'SMO356G0756' => 'smo', 'Solyc02g080620.3' => 'sly', 'Solyc06g074530.1' => 'sly', 'Solyc11g066890.1' => 'sly', 'Solyc11g072520.3' => 'sly', 'Sopen02g025330' => 'spe', 'Sopen06g031000' => 'spe', 'Sopen09g008240' => 'spe', 'Sopen09g025210' => 'spe', 'Sopen11g026600' => 'spe', 'Sopen11g030170' => 'spe', 'Sp1g10420' => 'spa', 'Sp3g06570' => 'spa', 'Sp4g10660' => 'spa', 'Sp5g16460' => 'spa', 'Sp6g22710' => 'spa', 'TAR365G0112' => 'tar', 'TAR369G0717' => 'tar', 'TAR374G0976' => 'tar', 'TAR623G1128' => 'tar', 'TAR626G1937' => 'tar', 'TAR627G0123' => 'tar', 'TAR628G0305' => 'tar', 'TAR636G1176' => 'tar', 'TAR636G2442' => 'tar', 'THA.LOC104800556' => 'tha', 'THA.LOC104809501' => 'tha', 'THA.LOC104815126' => 'tha', 'THA.LOC104815732' => 'tha', 'THA.LOC104823528' => 'tha', 'Thecc.02G365600' => 'tca', 'Thecc.06G222300' => 'tca', 'Thecc.09G261800' => 'tca', 'Thecc.09G291400' => 'tca', 'Thhalv10003028m.g' => 'esa', 'Thhalv10007886m.g' => 'esa', 'Thhalv10016085m.g' => 'esa', 'Thhalv10016681m.g' => 'esa', 'Thhalv10020951m.g' => 'esa', 'TPR.G15598' => 'tpr', 'TPR.G29305' => 'tpr', 'TPR.G32395' => 'tpr', 'TPR.G36998' => 'tpr', 'TPR.G4227' => 'tpr', 'TWI18G1433' => 'twi', 'TWI31G0755' => 'twi', 'TWI38G0912' => 'twi', 'TWI75G1097' => 'twi', 'TWI75G1619' => 'twi', 'TWI79G1336' => 'twi', 'unitig_0.g943' => 'ugi', 'unitig_0.g944' => 'ugi', 'unitig_22.g6646' => 'ugi', 'unitig_37.g12681' => 'ugi', 'unitig_8.g3290' => 'ugi', 'vmacro03278' => 'vma', 'vmacro12197' => 'vma', 'vmacro14478' => 'vma', 'vmacro15787' => 'vma', 'vmacro15789' => 'vma', 'vmacro15790' => 'vma', 'vmacro15806' => 'vma', 'vmacro22907' => 'vma', 'vmacro22908' => 'vma', 'vmacro22909' => 'vma', 'vmacro23108' => 'vma', 'VMungo0540G0540' => 'vmu', 'VMungo0540G2468' => 'vmu', 'VMungo1080G0390' => 'vmu', 'VMungo1080G1165' => 'vmu', 'VMungo1127G0170' => 'vmu', 'VMungo1127G2099' => 'vmu', 'VMungo1215G3013' => 'vmu', 'Zm00001eb013110' => 'zma', 'Zm00001eb084260' => 'zma', 'Zm00001eb096110' => 'zma', 'Zm00001eb217510' => 'zma', 'Zm00001eb322550' => 'zma', 'Zm00001eb390770' => 'zma', 'Zm00001eb397170' => 'zma', 'Zm00001eb404610' => 'zma', 'Zm00001eb421790' => 'zma' ), 'gf_id' => 'HOM05D000911', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000911' ), 'data_identifier' => 'HOM05D000911', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000911', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27780' => 'bna', 'A03p35380' => 'bna', 'A04p21160' => 'bna', 'A05p40570' => 'bna', 'A06p26900' => 'bna', 'A08p33230' => 'bna', 'A09p65960' => 'bna', 'A10p18290' => 'bna', 'Aa31LG1G12990' => 'aar', 'Aa31LG1G2980' => 'aar', 'Aa31LG4G14320' => 'aar', 'Aa31LG7G11800' => 'aar', 'Aa31sc36G50' => 'aar', 'Aa31sc36G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3721' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5459' => 'aag', 'Actinidia03028' => 'ach', 'Actinidia03753' => 'ach', 'Actinidia04187' => 'ach', 'Actinidia05509' => 'ach', 'Actinidia24180' => 'ach', 'Actinidia26906' => 'ach', 'Actinidia37097' => 'ach', 'Actinidia38249' => 'ach', 'Ah.01g003470' => 'amhyb', 'Ah.01g004580' => 'amhyb', 'Ah.01g014850' => 'amhyb', 'Ah.01g016830' => 'amhyb', 'Ah.14g088000' => 'amhyb', 'AL1G22980' => 'aly', 'AL3G18990' => 'aly', 'AL4G22440' => 'aly', 'AL4G33180' => 'aly', 'AL5G22920' => 'aly', 'AL6G33660' => 'aly', 'AL8G20720' => 'aly', 'Aqoxy1G00935' => 'aox', 'Aqoxy1G02094' => 'aox', 'Aqoxy2G01239' => 'aox', 'Aqoxy4G01870' => 'aox', 'Aqoxy7G00450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.36ZVTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71EM27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5D6C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH3WRE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3NCM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RIM768' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YB5YRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z36GDV' => 'arhy', 'AT1G08250' => 'ath', 'AT1G11790' => 'ath', 'AT2G27820' => 'ath', 'AT3G07630' => 'ath', 'AT3G44720' => 'ath', 'AT5G22630' => 'ath', 'ATR0693G304' => 'atr', 'ATR0794G109' => 'atr', 'ATR0820G120' => 'atr', 'ATR1159G064' => 'atr', 'Atru.chr10.2239' => 'acertr', 'Atru.chr3.3371' => 'acertr', 'Atru.chr6.3202' => 'acertr', 'AUR62006499' => 'cqu', 'AUR62012718' => 'cqu', 'AUR62021938' => 'cqu', 'AUR62023932' => 'cqu', 'AUR62025034' => 'cqu', 'AUR62025035' => 'cqu', 'AUR62038307' => 'cqu', 'AUR62043466' => 'cqu', 'BcaB02g10748' => 'bca', 'BcaB03g13231' => 'bca', 'BcaB03g14689' => 'bca', 'BcaB05g22716' => 'bca', 'BcaB06g28172' => 'bca', 'BcaB08g36413' => 'bca', 'BcaC01g02186' => 'bca', 'BcaC01g04272' => 'bca', 'BcaC02g08080' => 'bca', 'BcaC02g08227' => 'bca', 'BcaC03g13901' => 'bca', 'BcaC04g19593' => 'bca', 'BcaC04g20874' => 'bca', 'BcaC05g29557' => 'bca', 'BcaC06g35505' => 'bca', 'BcaC07g41954' => 'bca', 'BcaC07g41955' => 'bca', 'BcaC07g41956' => 'bca', 'BcaC07g42519' => 'bca', 'BcaC07g42520' => 'bca', 'BcaC07g42523' => 'bca', 'BcaC07g42524' => 'bca', 'BcaC07g42525' => 'bca', 'BcaC08g47480' => 'bca', 'BcaC08g47481' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00530' => 'bna', 'BolC2t07178H' => 'bol', 'BolC3t16567H' => 'bol', 'BolC4t27234H' => 'bol', 'BolC5t29728H' => 'bol', 'BolC5t34622H' => 'bol', 'BolC6t40321H' => 'bol', 'BolC7t42028H' => 'bol', 'BolC8t49125H' => 'bol', 'BolC8t52538H' => 'bol', 'BolC8t52539H' => 'bol', 'BolC9t56681H' => 'bol', 'BolC9t58266H' => 'bol', 'BolSC21t60294H' => 'bol', 'BraA02t05670Z' => 'bra', 'BraA03t12716Z' => 'bra', 'BraA04t17685Z' => 'bra', 'BraA05t22788Z' => 'bra', 'BraA06t24032Z' => 'bra', 'BraA06t25625Z' => 'bra', 'BraA07t27930Z' => 'bra', 'BraA08t35242Z' => 'bra', 'BraA09t38609Z' => 'bra', 'BraA10t43905Z' => 'bra', 'C02p11060' => 'bna', 'C03p42990' => 'bna', 'C03p67310' => 'bna', 'C04p56990' => 'bna', 'C04p58660' => 'bna', 'C05p09890' => 'bna', 'C05p59680' => 'bna', 'C06p19830' => 'bna', 'C06p53040' => 'bna', 'C07p15230' => 'bna', 'C08p50070' => 'bna', 'C08p50090' => 'bna', 'C09p38330' => 'bna', 'C09p53940' => 'bna', 'CAN.G1014.1' => 'can', 'CAN.G644.30' => 'can', 'CAN.G84.47' => 'can', 'CAN.G919.8' => 'can', 'CANSAT54G0113' => 'cansat', 'CANSAT54G1286' => 'cansat', 'CANSAT64G1020' => 'cansat', 'CARHR008080' => 'chi', 'CARHR008090' => 'chi', 'CARHR012130' => 'chi', 'CARHR038390' => 'chi', 'CARHR082330' => 'chi', 'CARHR120520' => 'chi', 'CARHR151470' => 'chi', 'CARHR190950' => 'chi', 'Carub.0001s0760' => 'cru', 'Carub.0001s1146' => 'cru', 'Carub.0003s0721' => 'cru', 'Carub.0004s0858' => 'cru', 'Carub.0005s1040' => 'cru', 'Carub.0006s2035' => 'cru', 'Carub.0015s0005' => 'cru', 'Ca_01607_v3' => 'car', 'Ca_01677_v3' => 'car', 'Ca_06087_v3' => 'car', 'Ca_19238_v3' => 'car', 'Ca_19373_v3' => 'car', 'Ca_21079_v3' => 'car', 'CBR_g54016' => 'cbr', 'CBR_g54018' => 'cbr', 'CBR_g54020' => 'cbr', 'Cc01_g09780' => 'ccan', 'Cc01_g11680' => 'ccan', 'Cc02_g15610' => 'ccan', 'Cc05_g04350' => 'ccan', 'Cc09_g01580' => 'ccan', 'CDE01G0795' => 'cde', 'CDE02G2024' => 'cde', 'CDE02G2260' => 'cde', 'CDE02G4561' => 'cde', 'CDE05G2733' => 'cde', 'CDE05G3422' => 'cde', 'CDE06G2003' => 'cde', 'CDE08G0576' => 'cde', 'CDE09G0048' => 'cde', 'CDE11G0805' => 'cde', 'Cfa003644' => 'cfa', 'Cfa006290' => 'cfa', 'Cfa010080' => 'cfa', 'Cfa011376' => 'cfa', 'Cfa011576' => 'cfa', 'Cfa011577' => 'cfa', 'Cfa014389' => 'cfa', 'Ciclev10006044m.g' => 'ccl', 'Ciclev10006954m.g' => 'ccl', 'Ciclev10015131m.g' => 'ccl', 'Ciclev10015580m.g' => 'ccl', 'Ciclev10028359m.g' => 'ccl', 'Ciclev10028573m.g' => 'ccl', 'CiPaw.03G159300' => 'cil', 'CiPaw.04G115100' => 'cil', 'CiPaw.09G092800' => 'cil', 'CiPaw.10G071800' => 'cil', 'CiPaw.13G105800' => 'cil', 'CiPaw.13G141000' => 'cil', 'CiPaw.14G103400' => 'cil', 'ClCG01G012700' => 'cla', 'ClCG01G012720' => 'cla', 'ClCG01G021920' => 'cla', 'ClCG02G008870' => 'cla', 'ClCG02G020840' => 'cla', 'ClCG02G021930' => 'cla', 'COL.COLO4_19302' => 'col', 'COL.COLO4_25262' => 'col', 'COL.COLO4_31788' => 'col', 'Cpa.g.c34684' => 'cpa', 'Cpa.g.c36520.1' => 'cpa', 'Cpa.g.c45626' => 'cpa', 'Cpa.g.sc121.17' => 'cpa', 'Cpa.g.sc13.22' => 'cpa', 'Cpa.g.sc87.88' => 'cpa', 'Cre06.g261800' => 'cre', 'CsaV3_1G014500' => 'csa', 'CsaV3_1G014510' => 'csa', 'CsaV3_2G034880' => 'csa', 'CsaV3_6G014760' => 'csa', 'CsaV3_6G021500' => 'csa', 'CsaV3_6G048980' => 'csa', 'CSS0002511' => 'camsi', 'CSS0007556' => 'camsi', 'CSS0008532' => 'camsi', 'CSS0009709' => 'camsi', 'CSS0010486' => 'camsi', 'CSS0016768' => 'camsi', 'CSS0023512' => 'camsi', 'CSS0025341' => 'camsi', 'CSS0027999' => 'camsi', 'CSS0028944' => 'camsi', 'CSS0032292' => 'camsi', 'CSS0032464' => 'camsi', 'CSS0037153' => 'camsi', 'CSS0039256' => 'camsi', 'CSS0048392' => 'camsi', 'CSS0050458' => 'camsi', 'DCAR_004224' => 'dca', 'DCAR_006147' => 'dca', 'DCAR_006465' => 'dca', 'DCAR_008159' => 'dca', 'DCAR_012164' => 'dca', 'DCAR_019764' => 'dca', 'Dinv05418' => 'din', 'Dinv10839' => 'din', 'Dinv12521' => 'din', 'Dinv13900' => 'din', 'Dinv29426' => 'din', 'Duzib150G0263' => 'dzi', 'Duzib168G1178' => 'dzi', 'Duzib168G1924' => 'dzi', 'Duzib170G0299' => 'dzi', 'Duzib170G0813' => 'dzi', 'Duzib235G1128' => 'dzi', 'Duzib248G1060' => 'dzi', 'ECA232G1910' => 'eca', 'ECA233G4621' => 'eca', 'ECA238G1216' => 'eca', 'ECA238G1784' => 'eca', 'ECA248G1242' => 'eca', 'EL10Ac8g20071' => 'bvu', 'EL10Ac9g21086' => 'bvu', 'EL10Ac9g22407' => 'bvu', 'EL10Ac9g22412' => 'bvu', 'Eucgr.A01119' => 'egr', 'Eucgr.E04043' => 'egr', 'Eucgr.J00428' => 'egr', 'Eucgr.J00958' => 'egr', 'FAN11G3091' => 'fan', 'FAN11G3651' => 'fan', 'FAN16G2566' => 'fan', 'FAN21G3155' => 'fan', 'FAN21G3400' => 'fan', 'FAN21G3543' => 'fan', 'FAN25G0234' => 'fan', 'FAN25G1422' => 'fan', 'FAN25G3392' => 'fan', 'FvH4_3g01940' => 'fve', 'FvH4_3g29870' => 'fve', 'FvH4_3g33680' => 'fve', 'Glyma.09G004200' => 'gma', 'Glyma.11G151288' => 'gma', 'Glyma.11G189100' => 'gma', 'Glyma.12G072500' => 'gma', 'Glyma.12G085500' => 'gma', 'Glyma.12G181800' => 'gma', 'Glyma.12G193000' => 'gma', 'Glyma.13G309300' => 'gma', 'Glyma.13G319000' => 'gma', 'Glyma.17G012600' => 'gma', 'Gohir.A06G148600' => 'ghi', 'Gohir.A07G115800' => 'ghi', 'Gohir.A08G003600' => 'ghi', 'Gohir.A09G093300' => 'ghi', 'Gohir.A09G105400' => 'ghi', 'Gohir.A09G105500' => 'ghi', 'Gohir.D06G154600' => 'ghi', 'Gohir.D07G120200' => 'ghi', 'Gohir.D08G013900' => 'ghi', 'Gohir.D09G093100' => 'ghi', 'Gohir.D09G102200' => 'ghi', 'Gohir.D09G102300' => 'ghi', 'Gorai.001G129400' => 'gra', 'Gorai.004G008200' => 'gra', 'Gorai.006G109800' => 'gra', 'Gorai.006G119500' => 'gra', 'Gorai.006G121300' => 'gra', 'Gorai.010G180700' => 'gra', 'GSVIVG01012716001' => 'vvi', 'GSVIVG01025118001' => 'vvi', 'GSVIVG01030439001' => 'vvi', 'GSVIVG01031397001' => 'vvi', 'HanXRQChr01g0004201' => 'han', 'HanXRQChr02g0054941' => 'han', 'HanXRQChr05g0141811' => 'han', 'HanXRQChr07g0197751' => 'han', 'HanXRQChr11g0346691' => 'han', 'HanXRQChr13g0396971' => 'han', 'HanXRQChr14g0432951' => 'han', 'HanXRQChr14g0452001' => 'han', 'HanXRQChr15g0496681' => 'han', 'HanXRQChr17g0557491' => 'han', 'HanXRQChr17g0557501' => 'han', 'Haze_06809' => 'cav', 'Haze_12852' => 'cav', 'Haze_15850' => 'cav', 'Haze_23446' => 'cav', 'Haze_23942' => 'cav', 'Haze_23943' => 'cav', 'Hma1.2p1_0091F.1_g046450' => 'hma', 'Hma1.2p1_0128F.1_g059910' => 'hma', 'Hma1.2p1_0249F.1_g102260' => 'hma', 'Hma1.2p1_0453F.1_g156190' => 'hma', 'Hma1.2p1_0695F.1_g204380' => 'hma', 'Hma1.2p1_0749F.1_g212650' => 'hma', 'Hma1.2p1_2156F.1_g315420' => 'hma', 'Hma1.2p1_2686F.1_g326940' => 'hma', 'HPP92_006428' => 'vpl', 'HPP92_012069' => 'vpl', 'HPP92_014129' => 'vpl', 'HPP92_014133' => 'vpl', 'HPP92_017315' => 'vpl', 'HPP92_026445' => 'vpl', 'HPP92_026446' => 'vpl', 'Hund00774' => 'sun', 'Hund07682' => 'sun', 'Hund21413' => 'sun', 'Hund23462' => 'sun', 'Hund23463' => 'sun', 'Lalb_Chr03g0027911' => 'lal', 'Lalb_Chr13g0304271' => 'lal', 'Lalb_Chr19g0137471' => 'lal', 'Lalb_Chr22g0350651' => 'lal', 'Lalb_Chr24g0395151' => 'lal', 'Lj1A1231T40' => 'lonja', 'Lj1A221T48' => 'lonja', 'Lj1C924T12' => 'lonja', 'Lj2C993G6' => 'lonja', 'Lj3g0005790' => 'lja', 'Lj3g0015432' => 'lja', 'Lj3g0017722' => 'lja', 'Lj3g0018497' => 'lja', 'Lj4g0025071' => 'lja', 'Lsat_1_v5_gn_1_129680' => 'lsa', 'Lsat_1_v5_gn_2_25321' => 'lsa', 'Lsat_1_v5_gn_2_95461' => 'lsa', 'Lsat_1_v5_gn_4_159620' => 'lsa', 'Lsat_1_v5_gn_6_41301' => 'lsa', 'Lsat_1_v5_gn_6_74660' => 'lsa', 'Lsat_1_v5_gn_7_11520' => 'lsa', 'Lsat_1_v5_gn_9_67680' => 'lsa', 'Manes.04G008300' => 'mes', 'Manes.04G008400' => 'mes', 'Manes.04G026500' => 'mes', 'Manes.10G135300' => 'mes', 'Manes.11G157300' => 'mes', 'Manes.12G074000' => 'mes', 'Manes.16G006200' => 'mes', 'Manes.17G026400' => 'mes', 'Mapoly0024s0086' => 'mpo', 'Mapoly0024s0087' => 'mpo', 'Mapoly0071s0057' => 'mpo', 'Mapoly0204s0012' => 'mpo', 'MBI04_g37681_MAGBIO' => 'mbi', 'MBI05_g17779_MAGBIO' => 'mbi', 'MBI12_g31184_MAGBIO' => 'mbi', 'MBI17_g11083_MAGBIO' => 'mbi', 'MBI18_g03883_MAGBIO' => 'mbi', 'MBI18_g28940_MAGBIO' => 'mbi', 'MCO01G690' => 'mco', 'MD03G1109900' => 'mdo', 'MD03G1134800' => 'mdo', 'MD05G1348000' => 'mdo', 'MD10G1322400' => 'mdo', 'MD11G1123300' => 'mdo', 'MD11G1157600' => 'mdo', 'Medtr2g084875' => 'mtr', 'Medtr2g088130' => 'mtr', 'Medtr4g055310' => 'mtr', 'Medtr4g061070' => 'mtr', 'Medtr4g132250' => 'mtr', 'MELO3C004795.2' => 'cme', 'MELO3C004797.2' => 'cme', 'MELO3C007396.2' => 'cme', 'MELO3C019277.2' => 'cme', 'MELO3C021449.2' => 'cme', 'MELO3C025736.2' => 'cme', 'Migut.D02175' => 'egut', 'Migut.H01573' => 'egut', 'Migut.M01327' => 'egut', 'Migut.N02513' => 'egut', 'MSTRG.14638' => 'ama', 'MSTRG.18632' => 'ama', 'MSTRG.7203' => 'ama', 'Nitab4.5_0000533g0140' => 'nta', 'Nitab4.5_0000888g0150' => 'nta', 'Nitab4.5_0001453g0040' => 'nta', 'Nitab4.5_0002827g0090' => 'nta', 'Nitab4.5_0003082g0040' => 'nta', 'Nitab4.5_0007799g0040' => 'nta', 'Nitab4.5_0008983g0010' => 'nta', 'Nitab4.5_0009017g0020' => 'nta', 'Nn1g02132' => 'nnu', 'Nn1g03492' => 'nnu', 'Nn1g03493' => 'nnu', 'Nn1g03494' => 'nnu', 'Nn1g07164' => 'nnu', 'Nn1g07291' => 'nnu', 'Nn2g10655' => 'nnu', 'Nn2g11652' => 'nnu', 'Nn2g14008' => 'nnu', 'Nn3g17476' => 'nnu', 'Nn3g17477' => 'nnu', 'Nn4g22370' => 'nnu', 'Nn4g25255' => 'nnu', 'Nn5g27755' => 'nnu', 'Nn6g34260' => 'nnu', 'Nn6g35041' => 'nnu', 'Oeu005924.1' => 'oeu', 'Oeu008383.1' => 'oeu', 'Oeu014928.1' => 'oeu', 'Oeu019889.1' => 'oeu', 'Oeu022271.1' => 'oeu', 'Oeu025271.1' => 'oeu', 'Oeu036302.1' => 'oeu', 'Oeu044100.1' => 'oeu', 'Os01g0528300' => 'osa', 'Os03g0286200' => 'osa', 'Os04g0406600' => 'osa', 'Os07g0512000' => 'osa', 'Os07g0694600' => 'osa', 'Os08g0411000' => 'osa', 'Os09g0565700' => 'osa', 'Os09g0566050' => 'osa', 'Os10g0523700' => 'osa', 'Peaxi162Scf00002g00514' => 'pax', 'Peaxi162Scf00047g01817' => 'pax', 'Peaxi162Scf00114g00001' => 'pax', 'Peaxi162Scf00147g00613' => 'pax', 'Peaxi162Scf00389g00425' => 'pax', 'PGR042G1139' => 'pgr', 'PGR042G3273' => 'pgr', 'PGR102G2180' => 'pgr', 'PGR119G0234' => 'pgr', 'PGR119G0668' => 'pgr', 'PGSC0003DMG400007122' => 'stu', 'PGSC0003DMG400016478' => 'stu', 'PGSC0003DMG400025374' => 'stu', 'PGSC0003DMG400026536' => 'stu', 'Phvul.003G079600' => 'pvu', 'Phvul.005G115600' => 'pvu', 'Phvul.005G127100' => 'pvu', 'Phvul.006G149500' => 'pvu', 'Phvul.006G149600' => 'pvu', 'Phvul.011G071800' => 'pvu', 'Phvul.011G090400' => 'pvu', 'Potri.004G013400' => 'ptr', 'Potri.004G188100' => 'ptr', 'Potri.008G195500' => 'ptr', 'Potri.009G148800' => 'ptr', 'Potri.011G004700' => 'ptr', 'Pp3c17_22810' => 'ppa', 'Pp3c18_4480' => 'ppa', 'Pp3c19_13030' => 'ppa', 'Pp3c1_33620' => 'ppa', 'Pp3c2_9380' => 'ppa', 'PRCOL_00001023' => 'pco', 'Prupe.3G216300' => 'ppe', 'Prupe.4G019500' => 'ppe', 'Prupe.6G092500' => 'ppe', 'Prupe.6G119200' => 'ppe', 'Psat0s1945g0080' => 'psa', 'Psat0s4167g0040' => 'psa', 'Psat1g185800' => 'psa', 'Psat4g006440' => 'psa', 'Psat4g006480' => 'psa', 'Psat4g168120' => 'psa', 'Psat5g255680' => 'psa', 'Psat5g261760' => 'psa', 'Psat7g222120' => 'psa', 'PSO063G7252' => 'pso', 'PSO170G4778' => 'pso', 'PSO210G2249' => 'pso', 'PSO339G2411' => 'pso', 'PSO339G2457' => 'pso', 'PSO339G2854' => 'pso', 'PSO339G4288' => 'pso', 'PSO339G4615' => 'pso', 'PSO384G2796' => 'pso', 'PSO384G2940' => 'pso', 'PSO384G4227' => 'pso', 'PSO478G1425' => 'pso', 'PSO541G3863' => 'pso', 'PSO675G0507' => 'pso', 'PSO782G0338' => 'pso', 'PSO832G0644' => 'pso', 'QL01p013664' => 'qlo', 'QL01p036598' => 'qlo', 'QL05p072984' => 'qlo', 'QL08p005768' => 'qlo', 'QL08p032743' => 'qlo', 'QL93p0073_0439' => 'qlo', 'QL93p0073_0444' => 'qlo', 'RcHm_v2.0_Chr5g0002851' => 'rch', 'RcHm_v2.0_Chr5g0055201' => 'rch', 'RcHm_v2.0_Chr5g0061191' => 'rch', 'RcHm_v2.0_Chr7g0203231' => 'rch', 'Rhsim01G0208100' => 'rsi', 'Rhsim01G0208200' => 'rsi', 'Rhsim02G0106500' => 'rsi', 'Rhsim03G0107900' => 'rsi', 'Rhsim06G0163400' => 'rsi', 'Rhsim13G0105200' => 'rsi', 'Sabra04G0006300' => 'sbr', 'Sabra04G0127000' => 'sbr', 'Sabra08G0148700' => 'sbr', 'Sabra09G0117400' => 'sbr', 'SalBow1G3326' => 'sbo', 'SalBow3G3228' => 'sbo', 'SalBow6G1634' => 'sbo', 'SalBow6G3603' => 'sbo', 'SalBow6G5266' => 'sbo', 'SalBow7G2265' => 'sbo', 'SalBow8G0850' => 'sbo', 'SalBow8G2592' => 'sbo', 'Sc05g0009240' => 'sci', 'Sc12g0002300' => 'sci', 'Sc21g0000100' => 'sci', 'Sc21g0004720' => 'sci', 'Sed0002949' => 'sed', 'Sed0004114' => 'sed', 'Sed0004306' => 'sed', 'Sed0006172' => 'sed', 'Sed0008413' => 'sed', 'Sed0013809' => 'sed', 'Sed0019556' => 'sed', 'SEGI_03570' => 'sgi', 'SEGI_07859' => 'sgi', 'SEGI_15042' => 'sgi', 'SEGI_16263' => 'sgi', 'SEGI_16552' => 'sgi', 'SEGI_24331' => 'sgi', 'SEGI_27316' => 'sgi', 'SEGI_29521' => 'sgi', 'SEGI_41342' => 'sgi', 'SGA_v2.0_scaffold27G11617' => 'sas', 'SGA_v2.0_scaffold316G48428' => 'sas', 'SGA_v2.0_scaffold49G18261' => 'sas', 'SGA_v2.0_scaffold7G03831' => 'sas', 'SGA_v2.0_scaffold93G28359' => 'sas', 'SHI02210' => 'shi', 'SHI06028' => 'shi', 'SHI06321' => 'shi', 'SMO111G0012' => 'smo', 'SMO228G0080' => 'smo', 'SMO356G0756' => 'smo', 'Solyc02g080620.3' => 'sly', 'Solyc06g074530.1' => 'sly', 'Solyc11g066890.1' => 'sly', 'Solyc11g072520.3' => 'sly', 'Sopen02g025330' => 'spe', 'Sopen06g031000' => 'spe', 'Sopen09g008240' => 'spe', 'Sopen09g025210' => 'spe', 'Sopen11g026600' => 'spe', 'Sopen11g030170' => 'spe', 'Sp1g10420' => 'spa', 'Sp3g06570' => 'spa', 'Sp4g10660' => 'spa', 'Sp5g16460' => 'spa', 'Sp6g22710' => 'spa', 'TAR365G0112' => 'tar', 'TAR369G0717' => 'tar', 'TAR374G0976' => 'tar', 'TAR623G1128' => 'tar', 'TAR626G1937' => 'tar', 'TAR627G0123' => 'tar', 'TAR628G0305' => 'tar', 'TAR636G1176' => 'tar', 'TAR636G2442' => 'tar', 'THA.LOC104800556' => 'tha', 'THA.LOC104809501' => 'tha', 'THA.LOC104815126' => 'tha', 'THA.LOC104815732' => 'tha', 'THA.LOC104823528' => 'tha', 'Thecc.02G365600' => 'tca', 'Thecc.06G222300' => 'tca', 'Thecc.09G261800' => 'tca', 'Thecc.09G291400' => 'tca', 'Thhalv10003028m.g' => 'esa', 'Thhalv10007886m.g' => 'esa', 'Thhalv10016085m.g' => 'esa', 'Thhalv10016681m.g' => 'esa', 'Thhalv10020951m.g' => 'esa', 'TPR.G15598' => 'tpr', 'TPR.G29305' => 'tpr', 'TPR.G32395' => 'tpr', 'TPR.G36998' => 'tpr', 'TPR.G4227' => 'tpr', 'TWI18G1433' => 'twi', 'TWI31G0755' => 'twi', 'TWI38G0912' => 'twi', 'TWI75G1097' => 'twi', 'TWI75G1619' => 'twi', 'TWI79G1336' => 'twi', 'unitig_0.g943' => 'ugi', 'unitig_0.g944' => 'ugi', 'unitig_22.g6646' => 'ugi', 'unitig_37.g12681' => 'ugi', 'unitig_8.g3290' => 'ugi', 'vmacro03278' => 'vma', 'vmacro12197' => 'vma', 'vmacro14478' => 'vma', 'vmacro15787' => 'vma', 'vmacro15789' => 'vma', 'vmacro15790' => 'vma', 'vmacro15806' => 'vma', 'vmacro22907' => 'vma', 'vmacro22908' => 'vma', 'vmacro22909' => 'vma', 'vmacro23108' => 'vma', 'VMungo0540G0540' => 'vmu', 'VMungo0540G2468' => 'vmu', 'VMungo1080G0390' => 'vmu', 'VMungo1080G1165' => 'vmu', 'VMungo1127G0170' => 'vmu', 'VMungo1127G2099' => 'vmu', 'VMungo1215G3013' => 'vmu', 'Zm00001eb013110' => 'zma', 'Zm00001eb084260' => 'zma', 'Zm00001eb096110' => 'zma', 'Zm00001eb217510' => 'zma', 'Zm00001eb322550' => 'zma', 'Zm00001eb390770' => 'zma', 'Zm00001eb397170' => 'zma', 'Zm00001eb404610' => 'zma', 'Zm00001eb421790' => 'zma' ) $gf_id = 'HOM05D000911' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000911' ) $data_identifier = 'HOM05D000911' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 16, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 5, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 6, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 8, 'nnu' => (int) 16, 'oeu' => (int) 8, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 5, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 16, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421790' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000911', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27780' => 'bna', 'A03p35380' => 'bna', 'A04p21160' => 'bna', 'A05p40570' => 'bna', 'A06p26900' => 'bna', 'A08p33230' => 'bna', 'A09p65960' => 'bna', 'A10p18290' => 'bna', 'Aa31LG1G12990' => 'aar', 'Aa31LG1G2980' => 'aar', 'Aa31LG4G14320' => 'aar', 'Aa31LG7G11800' => 'aar', 'Aa31sc36G50' => 'aar', 'Aa31sc36G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3721' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5459' => 'aag', 'Actinidia03028' => 'ach', 'Actinidia03753' => 'ach', 'Actinidia04187' => 'ach', 'Actinidia05509' => 'ach', 'Actinidia24180' => 'ach', 'Actinidia26906' => 'ach', 'Actinidia37097' => 'ach', 'Actinidia38249' => 'ach', 'Ah.01g003470' => 'amhyb', 'Ah.01g004580' => 'amhyb', 'Ah.01g014850' => 'amhyb', 'Ah.01g016830' => 'amhyb', 'Ah.14g088000' => 'amhyb', 'AL1G22980' => 'aly', 'AL3G18990' => 'aly', 'AL4G22440' => 'aly', 'AL4G33180' => 'aly', 'AL5G22920' => 'aly', 'AL6G33660' => 'aly', 'AL8G20720' => 'aly', 'Aqoxy1G00935' => 'aox', 'Aqoxy1G02094' => 'aox', 'Aqoxy2G01239' => 'aox', 'Aqoxy4G01870' => 'aox', 'Aqoxy7G00450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.36ZVTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71EM27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5D6C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH3WRE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3NCM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RIM768' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YB5YRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z36GDV' => 'arhy', 'AT1G08250' => 'ath', 'AT1G11790' => 'ath', 'AT2G27820' => 'ath', 'AT3G07630' => 'ath', 'AT3G44720' => 'ath', 'AT5G22630' => 'ath', 'ATR0693G304' => 'atr', 'ATR0794G109' => 'atr', 'ATR0820G120' => 'atr', 'ATR1159G064' => 'atr', 'Atru.chr10.2239' => 'acertr', 'Atru.chr3.3371' => 'acertr', 'Atru.chr6.3202' => 'acertr', 'AUR62006499' => 'cqu', 'AUR62012718' => 'cqu', 'AUR62021938' => 'cqu', 'AUR62023932' => 'cqu', 'AUR62025034' => 'cqu', 'AUR62025035' => 'cqu', 'AUR62038307' => 'cqu', 'AUR62043466' => 'cqu', 'BcaB02g10748' => 'bca', 'BcaB03g13231' => 'bca', 'BcaB03g14689' => 'bca', 'BcaB05g22716' => 'bca', 'BcaB06g28172' => 'bca', 'BcaB08g36413' => 'bca', 'BcaC01g02186' => 'bca', 'BcaC01g04272' => 'bca', 'BcaC02g08080' => 'bca', 'BcaC02g08227' => 'bca', 'BcaC03g13901' => 'bca', 'BcaC04g19593' => 'bca', 'BcaC04g20874' => 'bca', 'BcaC05g29557' => 'bca', 'BcaC06g35505' => 'bca', 'BcaC07g41954' => 'bca', 'BcaC07g41955' => 'bca', 'BcaC07g41956' => 'bca', 'BcaC07g42519' => 'bca', 'BcaC07g42520' => 'bca', 'BcaC07g42523' => 'bca', 'BcaC07g42524' => 'bca', 'BcaC07g42525' => 'bca', 'BcaC08g47480' => 'bca', 'BcaC08g47481' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00530' => 'bna', 'BolC2t07178H' => 'bol', 'BolC3t16567H' => 'bol', 'BolC4t27234H' => 'bol', 'BolC5t29728H' => 'bol', 'BolC5t34622H' => 'bol', 'BolC6t40321H' => 'bol', 'BolC7t42028H' => 'bol', 'BolC8t49125H' => 'bol', 'BolC8t52538H' => 'bol', 'BolC8t52539H' => 'bol', 'BolC9t56681H' => 'bol', 'BolC9t58266H' => 'bol', 'BolSC21t60294H' => 'bol', 'BraA02t05670Z' => 'bra', 'BraA03t12716Z' => 'bra', 'BraA04t17685Z' => 'bra', 'BraA05t22788Z' => 'bra', 'BraA06t24032Z' => 'bra', 'BraA06t25625Z' => 'bra', 'BraA07t27930Z' => 'bra', 'BraA08t35242Z' => 'bra', 'BraA09t38609Z' => 'bra', 'BraA10t43905Z' => 'bra', 'C02p11060' => 'bna', 'C03p42990' => 'bna', 'C03p67310' => 'bna', 'C04p56990' => 'bna', 'C04p58660' => 'bna', 'C05p09890' => 'bna', 'C05p59680' => 'bna', 'C06p19830' => 'bna', 'C06p53040' => 'bna', 'C07p15230' => 'bna', 'C08p50070' => 'bna', 'C08p50090' => 'bna', 'C09p38330' => 'bna', 'C09p53940' => 'bna', 'CAN.G1014.1' => 'can', 'CAN.G644.30' => 'can', 'CAN.G84.47' => 'can', 'CAN.G919.8' => 'can', 'CANSAT54G0113' => 'cansat', 'CANSAT54G1286' => 'cansat', 'CANSAT64G1020' => 'cansat', 'CARHR008080' => 'chi', 'CARHR008090' => 'chi', 'CARHR012130' => 'chi', 'CARHR038390' => 'chi', 'CARHR082330' => 'chi', 'CARHR120520' => 'chi', 'CARHR151470' => 'chi', 'CARHR190950' => 'chi', 'Carub.0001s0760' => 'cru', 'Carub.0001s1146' => 'cru', 'Carub.0003s0721' => 'cru', 'Carub.0004s0858' => 'cru', 'Carub.0005s1040' => 'cru', 'Carub.0006s2035' => 'cru', 'Carub.0015s0005' => 'cru', 'Ca_01607_v3' => 'car', 'Ca_01677_v3' => 'car', 'Ca_06087_v3' => 'car', 'Ca_19238_v3' => 'car', 'Ca_19373_v3' => 'car', 'Ca_21079_v3' => 'car', 'CBR_g54016' => 'cbr', 'CBR_g54018' => 'cbr', 'CBR_g54020' => 'cbr', 'Cc01_g09780' => 'ccan', 'Cc01_g11680' => 'ccan', 'Cc02_g15610' => 'ccan', 'Cc05_g04350' => 'ccan', 'Cc09_g01580' => 'ccan', 'CDE01G0795' => 'cde', 'CDE02G2024' => 'cde', 'CDE02G2260' => 'cde', 'CDE02G4561' => 'cde', 'CDE05G2733' => 'cde', 'CDE05G3422' => 'cde', 'CDE06G2003' => 'cde', 'CDE08G0576' => 'cde', 'CDE09G0048' => 'cde', 'CDE11G0805' => 'cde', 'Cfa003644' => 'cfa', 'Cfa006290' => 'cfa', 'Cfa010080' => 'cfa', 'Cfa011376' => 'cfa', 'Cfa011576' => 'cfa', 'Cfa011577' => 'cfa', 'Cfa014389' => 'cfa', 'Ciclev10006044m.g' => 'ccl', 'Ciclev10006954m.g' => 'ccl', 'Ciclev10015131m.g' => 'ccl', 'Ciclev10015580m.g' => 'ccl', 'Ciclev10028359m.g' => 'ccl', 'Ciclev10028573m.g' => 'ccl', 'CiPaw.03G159300' => 'cil', 'CiPaw.04G115100' => 'cil', 'CiPaw.09G092800' => 'cil', 'CiPaw.10G071800' => 'cil', 'CiPaw.13G105800' => 'cil', 'CiPaw.13G141000' => 'cil', 'CiPaw.14G103400' => 'cil', 'ClCG01G012700' => 'cla', 'ClCG01G012720' => 'cla', 'ClCG01G021920' => 'cla', 'ClCG02G008870' => 'cla', 'ClCG02G020840' => 'cla', 'ClCG02G021930' => 'cla', 'COL.COLO4_19302' => 'col', 'COL.COLO4_25262' => 'col', 'COL.COLO4_31788' => 'col', 'Cpa.g.c34684' => 'cpa', 'Cpa.g.c36520.1' => 'cpa', 'Cpa.g.c45626' => 'cpa', 'Cpa.g.sc121.17' => 'cpa', 'Cpa.g.sc13.22' => 'cpa', 'Cpa.g.sc87.88' => 'cpa', 'Cre06.g261800' => 'cre', 'CsaV3_1G014500' => 'csa', 'CsaV3_1G014510' => 'csa', 'CsaV3_2G034880' => 'csa', 'CsaV3_6G014760' => 'csa', 'CsaV3_6G021500' => 'csa', 'CsaV3_6G048980' => 'csa', 'CSS0002511' => 'camsi', 'CSS0007556' => 'camsi', 'CSS0008532' => 'camsi', 'CSS0009709' => 'camsi', 'CSS0010486' => 'camsi', 'CSS0016768' => 'camsi', 'CSS0023512' => 'camsi', 'CSS0025341' => 'camsi', 'CSS0027999' => 'camsi', 'CSS0028944' => 'camsi', 'CSS0032292' => 'camsi', 'CSS0032464' => 'camsi', 'CSS0037153' => 'camsi', 'CSS0039256' => 'camsi', 'CSS0048392' => 'camsi', 'CSS0050458' => 'camsi', 'DCAR_004224' => 'dca', 'DCAR_006147' => 'dca', 'DCAR_006465' => 'dca', 'DCAR_008159' => 'dca', 'DCAR_012164' => 'dca', 'DCAR_019764' => 'dca', 'Dinv05418' => 'din', 'Dinv10839' => 'din', 'Dinv12521' => 'din', 'Dinv13900' => 'din', 'Dinv29426' => 'din', 'Duzib150G0263' => 'dzi', 'Duzib168G1178' => 'dzi', 'Duzib168G1924' => 'dzi', 'Duzib170G0299' => 'dzi', 'Duzib170G0813' => 'dzi', 'Duzib235G1128' => 'dzi', 'Duzib248G1060' => 'dzi', 'ECA232G1910' => 'eca', 'ECA233G4621' => 'eca', 'ECA238G1216' => 'eca', 'ECA238G1784' => 'eca', 'ECA248G1242' => 'eca', 'EL10Ac8g20071' => 'bvu', 'EL10Ac9g21086' => 'bvu', 'EL10Ac9g22407' => 'bvu', 'EL10Ac9g22412' => 'bvu', 'Eucgr.A01119' => 'egr', 'Eucgr.E04043' => 'egr', 'Eucgr.J00428' => 'egr', 'Eucgr.J00958' => 'egr', 'FAN11G3091' => 'fan', 'FAN11G3651' => 'fan', 'FAN16G2566' => 'fan', 'FAN21G3155' => 'fan', 'FAN21G3400' => 'fan', 'FAN21G3543' => 'fan', 'FAN25G0234' => 'fan', 'FAN25G1422' => 'fan', 'FAN25G3392' => 'fan', 'FvH4_3g01940' => 'fve', 'FvH4_3g29870' => 'fve', 'FvH4_3g33680' => 'fve', 'Glyma.09G004200' => 'gma', 'Glyma.11G151288' => 'gma', 'Glyma.11G189100' => 'gma', 'Glyma.12G072500' => 'gma', 'Glyma.12G085500' => 'gma', 'Glyma.12G181800' => 'gma', 'Glyma.12G193000' => 'gma', 'Glyma.13G309300' => 'gma', 'Glyma.13G319000' => 'gma', 'Glyma.17G012600' => 'gma', 'Gohir.A06G148600' => 'ghi', 'Gohir.A07G115800' => 'ghi', 'Gohir.A08G003600' => 'ghi', 'Gohir.A09G093300' => 'ghi', 'Gohir.A09G105400' => 'ghi', 'Gohir.A09G105500' => 'ghi', 'Gohir.D06G154600' => 'ghi', 'Gohir.D07G120200' => 'ghi', 'Gohir.D08G013900' => 'ghi', 'Gohir.D09G093100' => 'ghi', 'Gohir.D09G102200' => 'ghi', 'Gohir.D09G102300' => 'ghi', 'Gorai.001G129400' => 'gra', 'Gorai.004G008200' => 'gra', 'Gorai.006G109800' => 'gra', 'Gorai.006G119500' => 'gra', 'Gorai.006G121300' => 'gra', 'Gorai.010G180700' => 'gra', 'GSVIVG01012716001' => 'vvi', 'GSVIVG01025118001' => 'vvi', 'GSVIVG01030439001' => 'vvi', 'GSVIVG01031397001' => 'vvi', 'HanXRQChr01g0004201' => 'han', 'HanXRQChr02g0054941' => 'han', 'HanXRQChr05g0141811' => 'han', 'HanXRQChr07g0197751' => 'han', 'HanXRQChr11g0346691' => 'han', 'HanXRQChr13g0396971' => 'han', 'HanXRQChr14g0432951' => 'han', 'HanXRQChr14g0452001' => 'han', 'HanXRQChr15g0496681' => 'han', 'HanXRQChr17g0557491' => 'han', 'HanXRQChr17g0557501' => 'han', 'Haze_06809' => 'cav', 'Haze_12852' => 'cav', 'Haze_15850' => 'cav', 'Haze_23446' => 'cav', 'Haze_23942' => 'cav', 'Haze_23943' => 'cav', 'Hma1.2p1_0091F.1_g046450' => 'hma', 'Hma1.2p1_0128F.1_g059910' => 'hma', 'Hma1.2p1_0249F.1_g102260' => 'hma', 'Hma1.2p1_0453F.1_g156190' => 'hma', 'Hma1.2p1_0695F.1_g204380' => 'hma', 'Hma1.2p1_0749F.1_g212650' => 'hma', 'Hma1.2p1_2156F.1_g315420' => 'hma', 'Hma1.2p1_2686F.1_g326940' => 'hma', 'HPP92_006428' => 'vpl', 'HPP92_012069' => 'vpl', 'HPP92_014129' => 'vpl', 'HPP92_014133' => 'vpl', 'HPP92_017315' => 'vpl', 'HPP92_026445' => 'vpl', 'HPP92_026446' => 'vpl', 'Hund00774' => 'sun', 'Hund07682' => 'sun', 'Hund21413' => 'sun', 'Hund23462' => 'sun', 'Hund23463' => 'sun', 'Lalb_Chr03g0027911' => 'lal', 'Lalb_Chr13g0304271' => 'lal', 'Lalb_Chr19g0137471' => 'lal', 'Lalb_Chr22g0350651' => 'lal', 'Lalb_Chr24g0395151' => 'lal', 'Lj1A1231T40' => 'lonja', 'Lj1A221T48' => 'lonja', 'Lj1C924T12' => 'lonja', 'Lj2C993G6' => 'lonja', 'Lj3g0005790' => 'lja', 'Lj3g0015432' => 'lja', 'Lj3g0017722' => 'lja', 'Lj3g0018497' => 'lja', 'Lj4g0025071' => 'lja', 'Lsat_1_v5_gn_1_129680' => 'lsa', 'Lsat_1_v5_gn_2_25321' => 'lsa', 'Lsat_1_v5_gn_2_95461' => 'lsa', 'Lsat_1_v5_gn_4_159620' => 'lsa', 'Lsat_1_v5_gn_6_41301' => 'lsa', 'Lsat_1_v5_gn_6_74660' => 'lsa', 'Lsat_1_v5_gn_7_11520' => 'lsa', 'Lsat_1_v5_gn_9_67680' => 'lsa', 'Manes.04G008300' => 'mes', 'Manes.04G008400' => 'mes', 'Manes.04G026500' => 'mes', 'Manes.10G135300' => 'mes', 'Manes.11G157300' => 'mes', 'Manes.12G074000' => 'mes', 'Manes.16G006200' => 'mes', 'Manes.17G026400' => 'mes', 'Mapoly0024s0086' => 'mpo', 'Mapoly0024s0087' => 'mpo', 'Mapoly0071s0057' => 'mpo', 'Mapoly0204s0012' => 'mpo', 'MBI04_g37681_MAGBIO' => 'mbi', 'MBI05_g17779_MAGBIO' => 'mbi', 'MBI12_g31184_MAGBIO' => 'mbi', 'MBI17_g11083_MAGBIO' => 'mbi', 'MBI18_g03883_MAGBIO' => 'mbi', 'MBI18_g28940_MAGBIO' => 'mbi', 'MCO01G690' => 'mco', 'MD03G1109900' => 'mdo', 'MD03G1134800' => 'mdo', 'MD05G1348000' => 'mdo', 'MD10G1322400' => 'mdo', 'MD11G1123300' => 'mdo', 'MD11G1157600' => 'mdo', 'Medtr2g084875' => 'mtr', 'Medtr2g088130' => 'mtr', 'Medtr4g055310' => 'mtr', 'Medtr4g061070' => 'mtr', 'Medtr4g132250' => 'mtr', 'MELO3C004795.2' => 'cme', 'MELO3C004797.2' => 'cme', 'MELO3C007396.2' => 'cme', 'MELO3C019277.2' => 'cme', 'MELO3C021449.2' => 'cme', 'MELO3C025736.2' => 'cme', 'Migut.D02175' => 'egut', 'Migut.H01573' => 'egut', 'Migut.M01327' => 'egut', 'Migut.N02513' => 'egut', 'MSTRG.14638' => 'ama', 'MSTRG.18632' => 'ama', 'MSTRG.7203' => 'ama', 'Nitab4.5_0000533g0140' => 'nta', 'Nitab4.5_0000888g0150' => 'nta', 'Nitab4.5_0001453g0040' => 'nta', 'Nitab4.5_0002827g0090' => 'nta', 'Nitab4.5_0003082g0040' => 'nta', 'Nitab4.5_0007799g0040' => 'nta', 'Nitab4.5_0008983g0010' => 'nta', 'Nitab4.5_0009017g0020' => 'nta', 'Nn1g02132' => 'nnu', 'Nn1g03492' => 'nnu', 'Nn1g03493' => 'nnu', 'Nn1g03494' => 'nnu', 'Nn1g07164' => 'nnu', 'Nn1g07291' => 'nnu', 'Nn2g10655' => 'nnu', 'Nn2g11652' => 'nnu', 'Nn2g14008' => 'nnu', 'Nn3g17476' => 'nnu', 'Nn3g17477' => 'nnu', 'Nn4g22370' => 'nnu', 'Nn4g25255' => 'nnu', 'Nn5g27755' => 'nnu', 'Nn6g34260' => 'nnu', 'Nn6g35041' => 'nnu', 'Oeu005924.1' => 'oeu', 'Oeu008383.1' => 'oeu', 'Oeu014928.1' => 'oeu', 'Oeu019889.1' => 'oeu', 'Oeu022271.1' => 'oeu', 'Oeu025271.1' => 'oeu', 'Oeu036302.1' => 'oeu', 'Oeu044100.1' => 'oeu', 'Os01g0528300' => 'osa', 'Os03g0286200' => 'osa', 'Os04g0406600' => 'osa', 'Os07g0512000' => 'osa', 'Os07g0694600' => 'osa', 'Os08g0411000' => 'osa', 'Os09g0565700' => 'osa', 'Os09g0566050' => 'osa', 'Os10g0523700' => 'osa', 'Peaxi162Scf00002g00514' => 'pax', 'Peaxi162Scf00047g01817' => 'pax', 'Peaxi162Scf00114g00001' => 'pax', 'Peaxi162Scf00147g00613' => 'pax', 'Peaxi162Scf00389g00425' => 'pax', 'PGR042G1139' => 'pgr', 'PGR042G3273' => 'pgr', 'PGR102G2180' => 'pgr', 'PGR119G0234' => 'pgr', 'PGR119G0668' => 'pgr', 'PGSC0003DMG400007122' => 'stu', 'PGSC0003DMG400016478' => 'stu', 'PGSC0003DMG400025374' => 'stu', 'PGSC0003DMG400026536' => 'stu', 'Phvul.003G079600' => 'pvu', 'Phvul.005G115600' => 'pvu', 'Phvul.005G127100' => 'pvu', 'Phvul.006G149500' => 'pvu', 'Phvul.006G149600' => 'pvu', 'Phvul.011G071800' => 'pvu', 'Phvul.011G090400' => 'pvu', 'Potri.004G013400' => 'ptr', 'Potri.004G188100' => 'ptr', 'Potri.008G195500' => 'ptr', 'Potri.009G148800' => 'ptr', 'Potri.011G004700' => 'ptr', 'Pp3c17_22810' => 'ppa', 'Pp3c18_4480' => 'ppa', 'Pp3c19_13030' => 'ppa', 'Pp3c1_33620' => 'ppa', 'Pp3c2_9380' => 'ppa', 'PRCOL_00001023' => 'pco', 'Prupe.3G216300' => 'ppe', 'Prupe.4G019500' => 'ppe', 'Prupe.6G092500' => 'ppe', 'Prupe.6G119200' => 'ppe', 'Psat0s1945g0080' => 'psa', 'Psat0s4167g0040' => 'psa', 'Psat1g185800' => 'psa', 'Psat4g006440' => 'psa', 'Psat4g006480' => 'psa', 'Psat4g168120' => 'psa', 'Psat5g255680' => 'psa', 'Psat5g261760' => 'psa', 'Psat7g222120' => 'psa', 'PSO063G7252' => 'pso', 'PSO170G4778' => 'pso', 'PSO210G2249' => 'pso', 'PSO339G2411' => 'pso', 'PSO339G2457' => 'pso', 'PSO339G2854' => 'pso', 'PSO339G4288' => 'pso', 'PSO339G4615' => 'pso', 'PSO384G2796' => 'pso', 'PSO384G2940' => 'pso', 'PSO384G4227' => 'pso', 'PSO478G1425' => 'pso', 'PSO541G3863' => 'pso', 'PSO675G0507' => 'pso', 'PSO782G0338' => 'pso', 'PSO832G0644' => 'pso', 'QL01p013664' => 'qlo', 'QL01p036598' => 'qlo', 'QL05p072984' => 'qlo', 'QL08p005768' => 'qlo', 'QL08p032743' => 'qlo', 'QL93p0073_0439' => 'qlo', 'QL93p0073_0444' => 'qlo', 'RcHm_v2.0_Chr5g0002851' => 'rch', 'RcHm_v2.0_Chr5g0055201' => 'rch', 'RcHm_v2.0_Chr5g0061191' => 'rch', 'RcHm_v2.0_Chr7g0203231' => 'rch', 'Rhsim01G0208100' => 'rsi', 'Rhsim01G0208200' => 'rsi', 'Rhsim02G0106500' => 'rsi', 'Rhsim03G0107900' => 'rsi', 'Rhsim06G0163400' => 'rsi', 'Rhsim13G0105200' => 'rsi', 'Sabra04G0006300' => 'sbr', 'Sabra04G0127000' => 'sbr', 'Sabra08G0148700' => 'sbr', 'Sabra09G0117400' => 'sbr', 'SalBow1G3326' => 'sbo', 'SalBow3G3228' => 'sbo', 'SalBow6G1634' => 'sbo', 'SalBow6G3603' => 'sbo', 'SalBow6G5266' => 'sbo', 'SalBow7G2265' => 'sbo', 'SalBow8G0850' => 'sbo', 'SalBow8G2592' => 'sbo', 'Sc05g0009240' => 'sci', 'Sc12g0002300' => 'sci', 'Sc21g0000100' => 'sci', 'Sc21g0004720' => 'sci', 'Sed0002949' => 'sed', 'Sed0004114' => 'sed', 'Sed0004306' => 'sed', 'Sed0006172' => 'sed', 'Sed0008413' => 'sed', 'Sed0013809' => 'sed', 'Sed0019556' => 'sed', 'SEGI_03570' => 'sgi', 'SEGI_07859' => 'sgi', 'SEGI_15042' => 'sgi', 'SEGI_16263' => 'sgi', 'SEGI_16552' => 'sgi', 'SEGI_24331' => 'sgi', 'SEGI_27316' => 'sgi', 'SEGI_29521' => 'sgi', 'SEGI_41342' => 'sgi', 'SGA_v2.0_scaffold27G11617' => 'sas', 'SGA_v2.0_scaffold316G48428' => 'sas', 'SGA_v2.0_scaffold49G18261' => 'sas', 'SGA_v2.0_scaffold7G03831' => 'sas', 'SGA_v2.0_scaffold93G28359' => 'sas', 'SHI02210' => 'shi', 'SHI06028' => 'shi', 'SHI06321' => 'shi', 'SMO111G0012' => 'smo', 'SMO228G0080' => 'smo', 'SMO356G0756' => 'smo', 'Solyc02g080620.3' => 'sly', 'Solyc06g074530.1' => 'sly', 'Solyc11g066890.1' => 'sly', 'Solyc11g072520.3' => 'sly', 'Sopen02g025330' => 'spe', 'Sopen06g031000' => 'spe', 'Sopen09g008240' => 'spe', 'Sopen09g025210' => 'spe', 'Sopen11g026600' => 'spe', 'Sopen11g030170' => 'spe', 'Sp1g10420' => 'spa', 'Sp3g06570' => 'spa', 'Sp4g10660' => 'spa', 'Sp5g16460' => 'spa', 'Sp6g22710' => 'spa', 'TAR365G0112' => 'tar', 'TAR369G0717' => 'tar', 'TAR374G0976' => 'tar', 'TAR623G1128' => 'tar', 'TAR626G1937' => 'tar', 'TAR627G0123' => 'tar', 'TAR628G0305' => 'tar', 'TAR636G1176' => 'tar', 'TAR636G2442' => 'tar', 'THA.LOC104800556' => 'tha', 'THA.LOC104809501' => 'tha', 'THA.LOC104815126' => 'tha', 'THA.LOC104815732' => 'tha', 'THA.LOC104823528' => 'tha', 'Thecc.02G365600' => 'tca', 'Thecc.06G222300' => 'tca', 'Thecc.09G261800' => 'tca', 'Thecc.09G291400' => 'tca', 'Thhalv10003028m.g' => 'esa', 'Thhalv10007886m.g' => 'esa', 'Thhalv10016085m.g' => 'esa', 'Thhalv10016681m.g' => 'esa', 'Thhalv10020951m.g' => 'esa', 'TPR.G15598' => 'tpr', 'TPR.G29305' => 'tpr', 'TPR.G32395' => 'tpr', 'TPR.G36998' => 'tpr', 'TPR.G4227' => 'tpr', 'TWI18G1433' => 'twi', 'TWI31G0755' => 'twi', 'TWI38G0912' => 'twi', 'TWI75G1097' => 'twi', 'TWI75G1619' => 'twi', 'TWI79G1336' => 'twi', 'unitig_0.g943' => 'ugi', 'unitig_0.g944' => 'ugi', 'unitig_22.g6646' => 'ugi', 'unitig_37.g12681' => 'ugi', 'unitig_8.g3290' => 'ugi', 'vmacro03278' => 'vma', 'vmacro12197' => 'vma', 'vmacro14478' => 'vma', 'vmacro15787' => 'vma', 'vmacro15789' => 'vma', 'vmacro15790' => 'vma', 'vmacro15806' => 'vma', 'vmacro22907' => 'vma', 'vmacro22908' => 'vma', 'vmacro22909' => 'vma', 'vmacro23108' => 'vma', 'VMungo0540G0540' => 'vmu', 'VMungo0540G2468' => 'vmu', 'VMungo1080G0390' => 'vmu', 'VMungo1080G1165' => 'vmu', 'VMungo1127G0170' => 'vmu', 'VMungo1127G2099' => 'vmu', 'VMungo1215G3013' => 'vmu', 'Zm00001eb013110' => 'zma', 'Zm00001eb084260' => 'zma', 'Zm00001eb096110' => 'zma', 'Zm00001eb217510' => 'zma', 'Zm00001eb322550' => 'zma', 'Zm00001eb390770' => 'zma', 'Zm00001eb397170' => 'zma', 'Zm00001eb404610' => 'zma', 'Zm00001eb421790' => 'zma' ), 'gf_id' => 'HOM05D000911', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000911' ), 'data_identifier' => 'HOM05D000911', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000911', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27780' => 'bna', 'A03p35380' => 'bna', 'A04p21160' => 'bna', 'A05p40570' => 'bna', 'A06p26900' => 'bna', 'A08p33230' => 'bna', 'A09p65960' => 'bna', 'A10p18290' => 'bna', 'Aa31LG1G12990' => 'aar', 'Aa31LG1G2980' => 'aar', 'Aa31LG4G14320' => 'aar', 'Aa31LG7G11800' => 'aar', 'Aa31sc36G50' => 'aar', 'Aa31sc36G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3721' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5459' => 'aag', 'Actinidia03028' => 'ach', 'Actinidia03753' => 'ach', 'Actinidia04187' => 'ach', 'Actinidia05509' => 'ach', 'Actinidia24180' => 'ach', 'Actinidia26906' => 'ach', 'Actinidia37097' => 'ach', 'Actinidia38249' => 'ach', 'Ah.01g003470' => 'amhyb', 'Ah.01g004580' => 'amhyb', 'Ah.01g014850' => 'amhyb', 'Ah.01g016830' => 'amhyb', 'Ah.14g088000' => 'amhyb', 'AL1G22980' => 'aly', 'AL3G18990' => 'aly', 'AL4G22440' => 'aly', 'AL4G33180' => 'aly', 'AL5G22920' => 'aly', 'AL6G33660' => 'aly', 'AL8G20720' => 'aly', 'Aqoxy1G00935' => 'aox', 'Aqoxy1G02094' => 'aox', 'Aqoxy2G01239' => 'aox', 'Aqoxy4G01870' => 'aox', 'Aqoxy7G00450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.36ZVTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71EM27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5D6C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH3WRE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3NCM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RIM768' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YB5YRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z36GDV' => 'arhy', 'AT1G08250' => 'ath', 'AT1G11790' => 'ath', 'AT2G27820' => 'ath', 'AT3G07630' => 'ath', 'AT3G44720' => 'ath', 'AT5G22630' => 'ath', 'ATR0693G304' => 'atr', 'ATR0794G109' => 'atr', 'ATR0820G120' => 'atr', 'ATR1159G064' => 'atr', 'Atru.chr10.2239' => 'acertr', 'Atru.chr3.3371' => 'acertr', 'Atru.chr6.3202' => 'acertr', 'AUR62006499' => 'cqu', 'AUR62012718' => 'cqu', 'AUR62021938' => 'cqu', 'AUR62023932' => 'cqu', 'AUR62025034' => 'cqu', 'AUR62025035' => 'cqu', 'AUR62038307' => 'cqu', 'AUR62043466' => 'cqu', 'BcaB02g10748' => 'bca', 'BcaB03g13231' => 'bca', 'BcaB03g14689' => 'bca', 'BcaB05g22716' => 'bca', 'BcaB06g28172' => 'bca', 'BcaB08g36413' => 'bca', 'BcaC01g02186' => 'bca', 'BcaC01g04272' => 'bca', 'BcaC02g08080' => 'bca', 'BcaC02g08227' => 'bca', 'BcaC03g13901' => 'bca', 'BcaC04g19593' => 'bca', 'BcaC04g20874' => 'bca', 'BcaC05g29557' => 'bca', 'BcaC06g35505' => 'bca', 'BcaC07g41954' => 'bca', 'BcaC07g41955' => 'bca', 'BcaC07g41956' => 'bca', 'BcaC07g42519' => 'bca', 'BcaC07g42520' => 'bca', 'BcaC07g42523' => 'bca', 'BcaC07g42524' => 'bca', 'BcaC07g42525' => 'bca', 'BcaC08g47480' => 'bca', 'BcaC08g47481' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00530' => 'bna', 'BolC2t07178H' => 'bol', 'BolC3t16567H' => 'bol', 'BolC4t27234H' => 'bol', 'BolC5t29728H' => 'bol', 'BolC5t34622H' => 'bol', 'BolC6t40321H' => 'bol', 'BolC7t42028H' => 'bol', 'BolC8t49125H' => 'bol', 'BolC8t52538H' => 'bol', 'BolC8t52539H' => 'bol', 'BolC9t56681H' => 'bol', 'BolC9t58266H' => 'bol', 'BolSC21t60294H' => 'bol', 'BraA02t05670Z' => 'bra', 'BraA03t12716Z' => 'bra', 'BraA04t17685Z' => 'bra', 'BraA05t22788Z' => 'bra', 'BraA06t24032Z' => 'bra', 'BraA06t25625Z' => 'bra', 'BraA07t27930Z' => 'bra', 'BraA08t35242Z' => 'bra', 'BraA09t38609Z' => 'bra', 'BraA10t43905Z' => 'bra', 'C02p11060' => 'bna', 'C03p42990' => 'bna', 'C03p67310' => 'bna', 'C04p56990' => 'bna', 'C04p58660' => 'bna', 'C05p09890' => 'bna', 'C05p59680' => 'bna', 'C06p19830' => 'bna', 'C06p53040' => 'bna', 'C07p15230' => 'bna', 'C08p50070' => 'bna', 'C08p50090' => 'bna', 'C09p38330' => 'bna', 'C09p53940' => 'bna', 'CAN.G1014.1' => 'can', 'CAN.G644.30' => 'can', 'CAN.G84.47' => 'can', 'CAN.G919.8' => 'can', 'CANSAT54G0113' => 'cansat', 'CANSAT54G1286' => 'cansat', 'CANSAT64G1020' => 'cansat', 'CARHR008080' => 'chi', 'CARHR008090' => 'chi', 'CARHR012130' => 'chi', 'CARHR038390' => 'chi', 'CARHR082330' => 'chi', 'CARHR120520' => 'chi', 'CARHR151470' => 'chi', 'CARHR190950' => 'chi', 'Carub.0001s0760' => 'cru', 'Carub.0001s1146' => 'cru', 'Carub.0003s0721' => 'cru', 'Carub.0004s0858' => 'cru', 'Carub.0005s1040' => 'cru', 'Carub.0006s2035' => 'cru', 'Carub.0015s0005' => 'cru', 'Ca_01607_v3' => 'car', 'Ca_01677_v3' => 'car', 'Ca_06087_v3' => 'car', 'Ca_19238_v3' => 'car', 'Ca_19373_v3' => 'car', 'Ca_21079_v3' => 'car', 'CBR_g54016' => 'cbr', 'CBR_g54018' => 'cbr', 'CBR_g54020' => 'cbr', 'Cc01_g09780' => 'ccan', 'Cc01_g11680' => 'ccan', 'Cc02_g15610' => 'ccan', 'Cc05_g04350' => 'ccan', 'Cc09_g01580' => 'ccan', 'CDE01G0795' => 'cde', 'CDE02G2024' => 'cde', 'CDE02G2260' => 'cde', 'CDE02G4561' => 'cde', 'CDE05G2733' => 'cde', 'CDE05G3422' => 'cde', 'CDE06G2003' => 'cde', 'CDE08G0576' => 'cde', 'CDE09G0048' => 'cde', 'CDE11G0805' => 'cde', 'Cfa003644' => 'cfa', 'Cfa006290' => 'cfa', 'Cfa010080' => 'cfa', 'Cfa011376' => 'cfa', 'Cfa011576' => 'cfa', 'Cfa011577' => 'cfa', 'Cfa014389' => 'cfa', 'Ciclev10006044m.g' => 'ccl', 'Ciclev10006954m.g' => 'ccl', 'Ciclev10015131m.g' => 'ccl', 'Ciclev10015580m.g' => 'ccl', 'Ciclev10028359m.g' => 'ccl', 'Ciclev10028573m.g' => 'ccl', 'CiPaw.03G159300' => 'cil', 'CiPaw.04G115100' => 'cil', 'CiPaw.09G092800' => 'cil', 'CiPaw.10G071800' => 'cil', 'CiPaw.13G105800' => 'cil', 'CiPaw.13G141000' => 'cil', 'CiPaw.14G103400' => 'cil', 'ClCG01G012700' => 'cla', 'ClCG01G012720' => 'cla', 'ClCG01G021920' => 'cla', 'ClCG02G008870' => 'cla', 'ClCG02G020840' => 'cla', 'ClCG02G021930' => 'cla', 'COL.COLO4_19302' => 'col', 'COL.COLO4_25262' => 'col', 'COL.COLO4_31788' => 'col', 'Cpa.g.c34684' => 'cpa', 'Cpa.g.c36520.1' => 'cpa', 'Cpa.g.c45626' => 'cpa', 'Cpa.g.sc121.17' => 'cpa', 'Cpa.g.sc13.22' => 'cpa', 'Cpa.g.sc87.88' => 'cpa', 'Cre06.g261800' => 'cre', 'CsaV3_1G014500' => 'csa', 'CsaV3_1G014510' => 'csa', 'CsaV3_2G034880' => 'csa', 'CsaV3_6G014760' => 'csa', 'CsaV3_6G021500' => 'csa', 'CsaV3_6G048980' => 'csa', 'CSS0002511' => 'camsi', 'CSS0007556' => 'camsi', 'CSS0008532' => 'camsi', 'CSS0009709' => 'camsi', 'CSS0010486' => 'camsi', 'CSS0016768' => 'camsi', 'CSS0023512' => 'camsi', 'CSS0025341' => 'camsi', 'CSS0027999' => 'camsi', 'CSS0028944' => 'camsi', 'CSS0032292' => 'camsi', 'CSS0032464' => 'camsi', 'CSS0037153' => 'camsi', 'CSS0039256' => 'camsi', 'CSS0048392' => 'camsi', 'CSS0050458' => 'camsi', 'DCAR_004224' => 'dca', 'DCAR_006147' => 'dca', 'DCAR_006465' => 'dca', 'DCAR_008159' => 'dca', 'DCAR_012164' => 'dca', 'DCAR_019764' => 'dca', 'Dinv05418' => 'din', 'Dinv10839' => 'din', 'Dinv12521' => 'din', 'Dinv13900' => 'din', 'Dinv29426' => 'din', 'Duzib150G0263' => 'dzi', 'Duzib168G1178' => 'dzi', 'Duzib168G1924' => 'dzi', 'Duzib170G0299' => 'dzi', 'Duzib170G0813' => 'dzi', 'Duzib235G1128' => 'dzi', 'Duzib248G1060' => 'dzi', 'ECA232G1910' => 'eca', 'ECA233G4621' => 'eca', 'ECA238G1216' => 'eca', 'ECA238G1784' => 'eca', 'ECA248G1242' => 'eca', 'EL10Ac8g20071' => 'bvu', 'EL10Ac9g21086' => 'bvu', 'EL10Ac9g22407' => 'bvu', 'EL10Ac9g22412' => 'bvu', 'Eucgr.A01119' => 'egr', 'Eucgr.E04043' => 'egr', 'Eucgr.J00428' => 'egr', 'Eucgr.J00958' => 'egr', 'FAN11G3091' => 'fan', 'FAN11G3651' => 'fan', 'FAN16G2566' => 'fan', 'FAN21G3155' => 'fan', 'FAN21G3400' => 'fan', 'FAN21G3543' => 'fan', 'FAN25G0234' => 'fan', 'FAN25G1422' => 'fan', 'FAN25G3392' => 'fan', 'FvH4_3g01940' => 'fve', 'FvH4_3g29870' => 'fve', 'FvH4_3g33680' => 'fve', 'Glyma.09G004200' => 'gma', 'Glyma.11G151288' => 'gma', 'Glyma.11G189100' => 'gma', 'Glyma.12G072500' => 'gma', 'Glyma.12G085500' => 'gma', 'Glyma.12G181800' => 'gma', 'Glyma.12G193000' => 'gma', 'Glyma.13G309300' => 'gma', 'Glyma.13G319000' => 'gma', 'Glyma.17G012600' => 'gma', 'Gohir.A06G148600' => 'ghi', 'Gohir.A07G115800' => 'ghi', 'Gohir.A08G003600' => 'ghi', 'Gohir.A09G093300' => 'ghi', 'Gohir.A09G105400' => 'ghi', 'Gohir.A09G105500' => 'ghi', 'Gohir.D06G154600' => 'ghi', 'Gohir.D07G120200' => 'ghi', 'Gohir.D08G013900' => 'ghi', 'Gohir.D09G093100' => 'ghi', 'Gohir.D09G102200' => 'ghi', 'Gohir.D09G102300' => 'ghi', 'Gorai.001G129400' => 'gra', 'Gorai.004G008200' => 'gra', 'Gorai.006G109800' => 'gra', 'Gorai.006G119500' => 'gra', 'Gorai.006G121300' => 'gra', 'Gorai.010G180700' => 'gra', 'GSVIVG01012716001' => 'vvi', 'GSVIVG01025118001' => 'vvi', 'GSVIVG01030439001' => 'vvi', 'GSVIVG01031397001' => 'vvi', 'HanXRQChr01g0004201' => 'han', 'HanXRQChr02g0054941' => 'han', 'HanXRQChr05g0141811' => 'han', 'HanXRQChr07g0197751' => 'han', 'HanXRQChr11g0346691' => 'han', 'HanXRQChr13g0396971' => 'han', 'HanXRQChr14g0432951' => 'han', 'HanXRQChr14g0452001' => 'han', 'HanXRQChr15g0496681' => 'han', 'HanXRQChr17g0557491' => 'han', 'HanXRQChr17g0557501' => 'han', 'Haze_06809' => 'cav', 'Haze_12852' => 'cav', 'Haze_15850' => 'cav', 'Haze_23446' => 'cav', 'Haze_23942' => 'cav', 'Haze_23943' => 'cav', 'Hma1.2p1_0091F.1_g046450' => 'hma', 'Hma1.2p1_0128F.1_g059910' => 'hma', 'Hma1.2p1_0249F.1_g102260' => 'hma', 'Hma1.2p1_0453F.1_g156190' => 'hma', 'Hma1.2p1_0695F.1_g204380' => 'hma', 'Hma1.2p1_0749F.1_g212650' => 'hma', 'Hma1.2p1_2156F.1_g315420' => 'hma', 'Hma1.2p1_2686F.1_g326940' => 'hma', 'HPP92_006428' => 'vpl', 'HPP92_012069' => 'vpl', 'HPP92_014129' => 'vpl', 'HPP92_014133' => 'vpl', 'HPP92_017315' => 'vpl', 'HPP92_026445' => 'vpl', 'HPP92_026446' => 'vpl', 'Hund00774' => 'sun', 'Hund07682' => 'sun', 'Hund21413' => 'sun', 'Hund23462' => 'sun', 'Hund23463' => 'sun', 'Lalb_Chr03g0027911' => 'lal', 'Lalb_Chr13g0304271' => 'lal', 'Lalb_Chr19g0137471' => 'lal', 'Lalb_Chr22g0350651' => 'lal', 'Lalb_Chr24g0395151' => 'lal', 'Lj1A1231T40' => 'lonja', 'Lj1A221T48' => 'lonja', 'Lj1C924T12' => 'lonja', 'Lj2C993G6' => 'lonja', 'Lj3g0005790' => 'lja', 'Lj3g0015432' => 'lja', 'Lj3g0017722' => 'lja', 'Lj3g0018497' => 'lja', 'Lj4g0025071' => 'lja', 'Lsat_1_v5_gn_1_129680' => 'lsa', 'Lsat_1_v5_gn_2_25321' => 'lsa', 'Lsat_1_v5_gn_2_95461' => 'lsa', 'Lsat_1_v5_gn_4_159620' => 'lsa', 'Lsat_1_v5_gn_6_41301' => 'lsa', 'Lsat_1_v5_gn_6_74660' => 'lsa', 'Lsat_1_v5_gn_7_11520' => 'lsa', 'Lsat_1_v5_gn_9_67680' => 'lsa', 'Manes.04G008300' => 'mes', 'Manes.04G008400' => 'mes', 'Manes.04G026500' => 'mes', 'Manes.10G135300' => 'mes', 'Manes.11G157300' => 'mes', 'Manes.12G074000' => 'mes', 'Manes.16G006200' => 'mes', 'Manes.17G026400' => 'mes', 'Mapoly0024s0086' => 'mpo', 'Mapoly0024s0087' => 'mpo', 'Mapoly0071s0057' => 'mpo', 'Mapoly0204s0012' => 'mpo', 'MBI04_g37681_MAGBIO' => 'mbi', 'MBI05_g17779_MAGBIO' => 'mbi', 'MBI12_g31184_MAGBIO' => 'mbi', 'MBI17_g11083_MAGBIO' => 'mbi', 'MBI18_g03883_MAGBIO' => 'mbi', 'MBI18_g28940_MAGBIO' => 'mbi', 'MCO01G690' => 'mco', 'MD03G1109900' => 'mdo', 'MD03G1134800' => 'mdo', 'MD05G1348000' => 'mdo', 'MD10G1322400' => 'mdo', 'MD11G1123300' => 'mdo', 'MD11G1157600' => 'mdo', 'Medtr2g084875' => 'mtr', 'Medtr2g088130' => 'mtr', 'Medtr4g055310' => 'mtr', 'Medtr4g061070' => 'mtr', 'Medtr4g132250' => 'mtr', 'MELO3C004795.2' => 'cme', 'MELO3C004797.2' => 'cme', 'MELO3C007396.2' => 'cme', 'MELO3C019277.2' => 'cme', 'MELO3C021449.2' => 'cme', 'MELO3C025736.2' => 'cme', 'Migut.D02175' => 'egut', 'Migut.H01573' => 'egut', 'Migut.M01327' => 'egut', 'Migut.N02513' => 'egut', 'MSTRG.14638' => 'ama', 'MSTRG.18632' => 'ama', 'MSTRG.7203' => 'ama', 'Nitab4.5_0000533g0140' => 'nta', 'Nitab4.5_0000888g0150' => 'nta', 'Nitab4.5_0001453g0040' => 'nta', 'Nitab4.5_0002827g0090' => 'nta', 'Nitab4.5_0003082g0040' => 'nta', 'Nitab4.5_0007799g0040' => 'nta', 'Nitab4.5_0008983g0010' => 'nta', 'Nitab4.5_0009017g0020' => 'nta', 'Nn1g02132' => 'nnu', 'Nn1g03492' => 'nnu', 'Nn1g03493' => 'nnu', 'Nn1g03494' => 'nnu', 'Nn1g07164' => 'nnu', 'Nn1g07291' => 'nnu', 'Nn2g10655' => 'nnu', 'Nn2g11652' => 'nnu', 'Nn2g14008' => 'nnu', 'Nn3g17476' => 'nnu', 'Nn3g17477' => 'nnu', 'Nn4g22370' => 'nnu', 'Nn4g25255' => 'nnu', 'Nn5g27755' => 'nnu', 'Nn6g34260' => 'nnu', 'Nn6g35041' => 'nnu', 'Oeu005924.1' => 'oeu', 'Oeu008383.1' => 'oeu', 'Oeu014928.1' => 'oeu', 'Oeu019889.1' => 'oeu', 'Oeu022271.1' => 'oeu', 'Oeu025271.1' => 'oeu', 'Oeu036302.1' => 'oeu', 'Oeu044100.1' => 'oeu', 'Os01g0528300' => 'osa', 'Os03g0286200' => 'osa', 'Os04g0406600' => 'osa', 'Os07g0512000' => 'osa', 'Os07g0694600' => 'osa', 'Os08g0411000' => 'osa', 'Os09g0565700' => 'osa', 'Os09g0566050' => 'osa', 'Os10g0523700' => 'osa', 'Peaxi162Scf00002g00514' => 'pax', 'Peaxi162Scf00047g01817' => 'pax', 'Peaxi162Scf00114g00001' => 'pax', 'Peaxi162Scf00147g00613' => 'pax', 'Peaxi162Scf00389g00425' => 'pax', 'PGR042G1139' => 'pgr', 'PGR042G3273' => 'pgr', 'PGR102G2180' => 'pgr', 'PGR119G0234' => 'pgr', 'PGR119G0668' => 'pgr', 'PGSC0003DMG400007122' => 'stu', 'PGSC0003DMG400016478' => 'stu', 'PGSC0003DMG400025374' => 'stu', 'PGSC0003DMG400026536' => 'stu', 'Phvul.003G079600' => 'pvu', 'Phvul.005G115600' => 'pvu', 'Phvul.005G127100' => 'pvu', 'Phvul.006G149500' => 'pvu', 'Phvul.006G149600' => 'pvu', 'Phvul.011G071800' => 'pvu', 'Phvul.011G090400' => 'pvu', 'Potri.004G013400' => 'ptr', 'Potri.004G188100' => 'ptr', 'Potri.008G195500' => 'ptr', 'Potri.009G148800' => 'ptr', 'Potri.011G004700' => 'ptr', 'Pp3c17_22810' => 'ppa', 'Pp3c18_4480' => 'ppa', 'Pp3c19_13030' => 'ppa', 'Pp3c1_33620' => 'ppa', 'Pp3c2_9380' => 'ppa', 'PRCOL_00001023' => 'pco', 'Prupe.3G216300' => 'ppe', 'Prupe.4G019500' => 'ppe', 'Prupe.6G092500' => 'ppe', 'Prupe.6G119200' => 'ppe', 'Psat0s1945g0080' => 'psa', 'Psat0s4167g0040' => 'psa', 'Psat1g185800' => 'psa', 'Psat4g006440' => 'psa', 'Psat4g006480' => 'psa', 'Psat4g168120' => 'psa', 'Psat5g255680' => 'psa', 'Psat5g261760' => 'psa', 'Psat7g222120' => 'psa', 'PSO063G7252' => 'pso', 'PSO170G4778' => 'pso', 'PSO210G2249' => 'pso', 'PSO339G2411' => 'pso', 'PSO339G2457' => 'pso', 'PSO339G2854' => 'pso', 'PSO339G4288' => 'pso', 'PSO339G4615' => 'pso', 'PSO384G2796' => 'pso', 'PSO384G2940' => 'pso', 'PSO384G4227' => 'pso', 'PSO478G1425' => 'pso', 'PSO541G3863' => 'pso', 'PSO675G0507' => 'pso', 'PSO782G0338' => 'pso', 'PSO832G0644' => 'pso', 'QL01p013664' => 'qlo', 'QL01p036598' => 'qlo', 'QL05p072984' => 'qlo', 'QL08p005768' => 'qlo', 'QL08p032743' => 'qlo', 'QL93p0073_0439' => 'qlo', 'QL93p0073_0444' => 'qlo', 'RcHm_v2.0_Chr5g0002851' => 'rch', 'RcHm_v2.0_Chr5g0055201' => 'rch', 'RcHm_v2.0_Chr5g0061191' => 'rch', 'RcHm_v2.0_Chr7g0203231' => 'rch', 'Rhsim01G0208100' => 'rsi', 'Rhsim01G0208200' => 'rsi', 'Rhsim02G0106500' => 'rsi', 'Rhsim03G0107900' => 'rsi', 'Rhsim06G0163400' => 'rsi', 'Rhsim13G0105200' => 'rsi', 'Sabra04G0006300' => 'sbr', 'Sabra04G0127000' => 'sbr', 'Sabra08G0148700' => 'sbr', 'Sabra09G0117400' => 'sbr', 'SalBow1G3326' => 'sbo', 'SalBow3G3228' => 'sbo', 'SalBow6G1634' => 'sbo', 'SalBow6G3603' => 'sbo', 'SalBow6G5266' => 'sbo', 'SalBow7G2265' => 'sbo', 'SalBow8G0850' => 'sbo', 'SalBow8G2592' => 'sbo', 'Sc05g0009240' => 'sci', 'Sc12g0002300' => 'sci', 'Sc21g0000100' => 'sci', 'Sc21g0004720' => 'sci', 'Sed0002949' => 'sed', 'Sed0004114' => 'sed', 'Sed0004306' => 'sed', 'Sed0006172' => 'sed', 'Sed0008413' => 'sed', 'Sed0013809' => 'sed', 'Sed0019556' => 'sed', 'SEGI_03570' => 'sgi', 'SEGI_07859' => 'sgi', 'SEGI_15042' => 'sgi', 'SEGI_16263' => 'sgi', 'SEGI_16552' => 'sgi', 'SEGI_24331' => 'sgi', 'SEGI_27316' => 'sgi', 'SEGI_29521' => 'sgi', 'SEGI_41342' => 'sgi', 'SGA_v2.0_scaffold27G11617' => 'sas', 'SGA_v2.0_scaffold316G48428' => 'sas', 'SGA_v2.0_scaffold49G18261' => 'sas', 'SGA_v2.0_scaffold7G03831' => 'sas', 'SGA_v2.0_scaffold93G28359' => 'sas', 'SHI02210' => 'shi', 'SHI06028' => 'shi', 'SHI06321' => 'shi', 'SMO111G0012' => 'smo', 'SMO228G0080' => 'smo', 'SMO356G0756' => 'smo', 'Solyc02g080620.3' => 'sly', 'Solyc06g074530.1' => 'sly', 'Solyc11g066890.1' => 'sly', 'Solyc11g072520.3' => 'sly', 'Sopen02g025330' => 'spe', 'Sopen06g031000' => 'spe', 'Sopen09g008240' => 'spe', 'Sopen09g025210' => 'spe', 'Sopen11g026600' => 'spe', 'Sopen11g030170' => 'spe', 'Sp1g10420' => 'spa', 'Sp3g06570' => 'spa', 'Sp4g10660' => 'spa', 'Sp5g16460' => 'spa', 'Sp6g22710' => 'spa', 'TAR365G0112' => 'tar', 'TAR369G0717' => 'tar', 'TAR374G0976' => 'tar', 'TAR623G1128' => 'tar', 'TAR626G1937' => 'tar', 'TAR627G0123' => 'tar', 'TAR628G0305' => 'tar', 'TAR636G1176' => 'tar', 'TAR636G2442' => 'tar', 'THA.LOC104800556' => 'tha', 'THA.LOC104809501' => 'tha', 'THA.LOC104815126' => 'tha', 'THA.LOC104815732' => 'tha', 'THA.LOC104823528' => 'tha', 'Thecc.02G365600' => 'tca', 'Thecc.06G222300' => 'tca', 'Thecc.09G261800' => 'tca', 'Thecc.09G291400' => 'tca', 'Thhalv10003028m.g' => 'esa', 'Thhalv10007886m.g' => 'esa', 'Thhalv10016085m.g' => 'esa', 'Thhalv10016681m.g' => 'esa', 'Thhalv10020951m.g' => 'esa', 'TPR.G15598' => 'tpr', 'TPR.G29305' => 'tpr', 'TPR.G32395' => 'tpr', 'TPR.G36998' => 'tpr', 'TPR.G4227' => 'tpr', 'TWI18G1433' => 'twi', 'TWI31G0755' => 'twi', 'TWI38G0912' => 'twi', 'TWI75G1097' => 'twi', 'TWI75G1619' => 'twi', 'TWI79G1336' => 'twi', 'unitig_0.g943' => 'ugi', 'unitig_0.g944' => 'ugi', 'unitig_22.g6646' => 'ugi', 'unitig_37.g12681' => 'ugi', 'unitig_8.g3290' => 'ugi', 'vmacro03278' => 'vma', 'vmacro12197' => 'vma', 'vmacro14478' => 'vma', 'vmacro15787' => 'vma', 'vmacro15789' => 'vma', 'vmacro15790' => 'vma', 'vmacro15806' => 'vma', 'vmacro22907' => 'vma', 'vmacro22908' => 'vma', 'vmacro22909' => 'vma', 'vmacro23108' => 'vma', 'VMungo0540G0540' => 'vmu', 'VMungo0540G2468' => 'vmu', 'VMungo1080G0390' => 'vmu', 'VMungo1080G1165' => 'vmu', 'VMungo1127G0170' => 'vmu', 'VMungo1127G2099' => 'vmu', 'VMungo1215G3013' => 'vmu', 'Zm00001eb013110' => 'zma', 'Zm00001eb084260' => 'zma', 'Zm00001eb096110' => 'zma', 'Zm00001eb217510' => 'zma', 'Zm00001eb322550' => 'zma', 'Zm00001eb390770' => 'zma', 'Zm00001eb397170' => 'zma', 'Zm00001eb404610' => 'zma', 'Zm00001eb421790' => 'zma' ) $gf_id = 'HOM05D000911' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000911' ) $data_identifier = 'HOM05D000911' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 16, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 5, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 6, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 8, 'nnu' => (int) 16, 'oeu' => (int) 8, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 5, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 16, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421790' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000911', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27780' => 'bna', 'A03p35380' => 'bna', 'A04p21160' => 'bna', 'A05p40570' => 'bna', 'A06p26900' => 'bna', 'A08p33230' => 'bna', 'A09p65960' => 'bna', 'A10p18290' => 'bna', 'Aa31LG1G12990' => 'aar', 'Aa31LG1G2980' => 'aar', 'Aa31LG4G14320' => 'aar', 'Aa31LG7G11800' => 'aar', 'Aa31sc36G50' => 'aar', 'Aa31sc36G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3721' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5459' => 'aag', 'Actinidia03028' => 'ach', 'Actinidia03753' => 'ach', 'Actinidia04187' => 'ach', 'Actinidia05509' => 'ach', 'Actinidia24180' => 'ach', 'Actinidia26906' => 'ach', 'Actinidia37097' => 'ach', 'Actinidia38249' => 'ach', 'Ah.01g003470' => 'amhyb', 'Ah.01g004580' => 'amhyb', 'Ah.01g014850' => 'amhyb', 'Ah.01g016830' => 'amhyb', 'Ah.14g088000' => 'amhyb', 'AL1G22980' => 'aly', 'AL3G18990' => 'aly', 'AL4G22440' => 'aly', 'AL4G33180' => 'aly', 'AL5G22920' => 'aly', 'AL6G33660' => 'aly', 'AL8G20720' => 'aly', 'Aqoxy1G00935' => 'aox', 'Aqoxy1G02094' => 'aox', 'Aqoxy2G01239' => 'aox', 'Aqoxy4G01870' => 'aox', 'Aqoxy7G00450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.36ZVTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71EM27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5D6C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH3WRE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3NCM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RIM768' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YB5YRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z36GDV' => 'arhy', 'AT1G08250' => 'ath', 'AT1G11790' => 'ath', 'AT2G27820' => 'ath', 'AT3G07630' => 'ath', 'AT3G44720' => 'ath', 'AT5G22630' => 'ath', 'ATR0693G304' => 'atr', 'ATR0794G109' => 'atr', 'ATR0820G120' => 'atr', 'ATR1159G064' => 'atr', 'Atru.chr10.2239' => 'acertr', 'Atru.chr3.3371' => 'acertr', 'Atru.chr6.3202' => 'acertr', 'AUR62006499' => 'cqu', 'AUR62012718' => 'cqu', 'AUR62021938' => 'cqu', 'AUR62023932' => 'cqu', 'AUR62025034' => 'cqu', 'AUR62025035' => 'cqu', 'AUR62038307' => 'cqu', 'AUR62043466' => 'cqu', 'BcaB02g10748' => 'bca', 'BcaB03g13231' => 'bca', 'BcaB03g14689' => 'bca', 'BcaB05g22716' => 'bca', 'BcaB06g28172' => 'bca', 'BcaB08g36413' => 'bca', 'BcaC01g02186' => 'bca', 'BcaC01g04272' => 'bca', 'BcaC02g08080' => 'bca', 'BcaC02g08227' => 'bca', 'BcaC03g13901' => 'bca', 'BcaC04g19593' => 'bca', 'BcaC04g20874' => 'bca', 'BcaC05g29557' => 'bca', 'BcaC06g35505' => 'bca', 'BcaC07g41954' => 'bca', 'BcaC07g41955' => 'bca', 'BcaC07g41956' => 'bca', 'BcaC07g42519' => 'bca', 'BcaC07g42520' => 'bca', 'BcaC07g42523' => 'bca', 'BcaC07g42524' => 'bca', 'BcaC07g42525' => 'bca', 'BcaC08g47480' => 'bca', 'BcaC08g47481' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00530' => 'bna', 'BolC2t07178H' => 'bol', 'BolC3t16567H' => 'bol', 'BolC4t27234H' => 'bol', 'BolC5t29728H' => 'bol', 'BolC5t34622H' => 'bol', 'BolC6t40321H' => 'bol', 'BolC7t42028H' => 'bol', 'BolC8t49125H' => 'bol', 'BolC8t52538H' => 'bol', 'BolC8t52539H' => 'bol', 'BolC9t56681H' => 'bol', 'BolC9t58266H' => 'bol', 'BolSC21t60294H' => 'bol', 'BraA02t05670Z' => 'bra', 'BraA03t12716Z' => 'bra', 'BraA04t17685Z' => 'bra', 'BraA05t22788Z' => 'bra', 'BraA06t24032Z' => 'bra', 'BraA06t25625Z' => 'bra', 'BraA07t27930Z' => 'bra', 'BraA08t35242Z' => 'bra', 'BraA09t38609Z' => 'bra', 'BraA10t43905Z' => 'bra', 'C02p11060' => 'bna', 'C03p42990' => 'bna', 'C03p67310' => 'bna', 'C04p56990' => 'bna', 'C04p58660' => 'bna', 'C05p09890' => 'bna', 'C05p59680' => 'bna', 'C06p19830' => 'bna', 'C06p53040' => 'bna', 'C07p15230' => 'bna', 'C08p50070' => 'bna', 'C08p50090' => 'bna', 'C09p38330' => 'bna', 'C09p53940' => 'bna', 'CAN.G1014.1' => 'can', 'CAN.G644.30' => 'can', 'CAN.G84.47' => 'can', 'CAN.G919.8' => 'can', 'CANSAT54G0113' => 'cansat', 'CANSAT54G1286' => 'cansat', 'CANSAT64G1020' => 'cansat', 'CARHR008080' => 'chi', 'CARHR008090' => 'chi', 'CARHR012130' => 'chi', 'CARHR038390' => 'chi', 'CARHR082330' => 'chi', 'CARHR120520' => 'chi', 'CARHR151470' => 'chi', 'CARHR190950' => 'chi', 'Carub.0001s0760' => 'cru', 'Carub.0001s1146' => 'cru', 'Carub.0003s0721' => 'cru', 'Carub.0004s0858' => 'cru', 'Carub.0005s1040' => 'cru', 'Carub.0006s2035' => 'cru', 'Carub.0015s0005' => 'cru', 'Ca_01607_v3' => 'car', 'Ca_01677_v3' => 'car', 'Ca_06087_v3' => 'car', 'Ca_19238_v3' => 'car', 'Ca_19373_v3' => 'car', 'Ca_21079_v3' => 'car', 'CBR_g54016' => 'cbr', 'CBR_g54018' => 'cbr', 'CBR_g54020' => 'cbr', 'Cc01_g09780' => 'ccan', 'Cc01_g11680' => 'ccan', 'Cc02_g15610' => 'ccan', 'Cc05_g04350' => 'ccan', 'Cc09_g01580' => 'ccan', 'CDE01G0795' => 'cde', 'CDE02G2024' => 'cde', 'CDE02G2260' => 'cde', 'CDE02G4561' => 'cde', 'CDE05G2733' => 'cde', 'CDE05G3422' => 'cde', 'CDE06G2003' => 'cde', 'CDE08G0576' => 'cde', 'CDE09G0048' => 'cde', 'CDE11G0805' => 'cde', 'Cfa003644' => 'cfa', 'Cfa006290' => 'cfa', 'Cfa010080' => 'cfa', 'Cfa011376' => 'cfa', 'Cfa011576' => 'cfa', 'Cfa011577' => 'cfa', 'Cfa014389' => 'cfa', 'Ciclev10006044m.g' => 'ccl', 'Ciclev10006954m.g' => 'ccl', 'Ciclev10015131m.g' => 'ccl', 'Ciclev10015580m.g' => 'ccl', 'Ciclev10028359m.g' => 'ccl', 'Ciclev10028573m.g' => 'ccl', 'CiPaw.03G159300' => 'cil', 'CiPaw.04G115100' => 'cil', 'CiPaw.09G092800' => 'cil', 'CiPaw.10G071800' => 'cil', 'CiPaw.13G105800' => 'cil', 'CiPaw.13G141000' => 'cil', 'CiPaw.14G103400' => 'cil', 'ClCG01G012700' => 'cla', 'ClCG01G012720' => 'cla', 'ClCG01G021920' => 'cla', 'ClCG02G008870' => 'cla', 'ClCG02G020840' => 'cla', 'ClCG02G021930' => 'cla', 'COL.COLO4_19302' => 'col', 'COL.COLO4_25262' => 'col', 'COL.COLO4_31788' => 'col', 'Cpa.g.c34684' => 'cpa', 'Cpa.g.c36520.1' => 'cpa', 'Cpa.g.c45626' => 'cpa', 'Cpa.g.sc121.17' => 'cpa', 'Cpa.g.sc13.22' => 'cpa', 'Cpa.g.sc87.88' => 'cpa', 'Cre06.g261800' => 'cre', 'CsaV3_1G014500' => 'csa', 'CsaV3_1G014510' => 'csa', 'CsaV3_2G034880' => 'csa', 'CsaV3_6G014760' => 'csa', 'CsaV3_6G021500' => 'csa', 'CsaV3_6G048980' => 'csa', 'CSS0002511' => 'camsi', 'CSS0007556' => 'camsi', 'CSS0008532' => 'camsi', 'CSS0009709' => 'camsi', 'CSS0010486' => 'camsi', 'CSS0016768' => 'camsi', 'CSS0023512' => 'camsi', 'CSS0025341' => 'camsi', 'CSS0027999' => 'camsi', 'CSS0028944' => 'camsi', 'CSS0032292' => 'camsi', 'CSS0032464' => 'camsi', 'CSS0037153' => 'camsi', 'CSS0039256' => 'camsi', 'CSS0048392' => 'camsi', 'CSS0050458' => 'camsi', 'DCAR_004224' => 'dca', 'DCAR_006147' => 'dca', 'DCAR_006465' => 'dca', 'DCAR_008159' => 'dca', 'DCAR_012164' => 'dca', 'DCAR_019764' => 'dca', 'Dinv05418' => 'din', 'Dinv10839' => 'din', 'Dinv12521' => 'din', 'Dinv13900' => 'din', 'Dinv29426' => 'din', 'Duzib150G0263' => 'dzi', 'Duzib168G1178' => 'dzi', 'Duzib168G1924' => 'dzi', 'Duzib170G0299' => 'dzi', 'Duzib170G0813' => 'dzi', 'Duzib235G1128' => 'dzi', 'Duzib248G1060' => 'dzi', 'ECA232G1910' => 'eca', 'ECA233G4621' => 'eca', 'ECA238G1216' => 'eca', 'ECA238G1784' => 'eca', 'ECA248G1242' => 'eca', 'EL10Ac8g20071' => 'bvu', 'EL10Ac9g21086' => 'bvu', 'EL10Ac9g22407' => 'bvu', 'EL10Ac9g22412' => 'bvu', 'Eucgr.A01119' => 'egr', 'Eucgr.E04043' => 'egr', 'Eucgr.J00428' => 'egr', 'Eucgr.J00958' => 'egr', 'FAN11G3091' => 'fan', 'FAN11G3651' => 'fan', 'FAN16G2566' => 'fan', 'FAN21G3155' => 'fan', 'FAN21G3400' => 'fan', 'FAN21G3543' => 'fan', 'FAN25G0234' => 'fan', 'FAN25G1422' => 'fan', 'FAN25G3392' => 'fan', 'FvH4_3g01940' => 'fve', 'FvH4_3g29870' => 'fve', 'FvH4_3g33680' => 'fve', 'Glyma.09G004200' => 'gma', 'Glyma.11G151288' => 'gma', 'Glyma.11G189100' => 'gma', 'Glyma.12G072500' => 'gma', 'Glyma.12G085500' => 'gma', 'Glyma.12G181800' => 'gma', 'Glyma.12G193000' => 'gma', 'Glyma.13G309300' => 'gma', 'Glyma.13G319000' => 'gma', 'Glyma.17G012600' => 'gma', 'Gohir.A06G148600' => 'ghi', 'Gohir.A07G115800' => 'ghi', 'Gohir.A08G003600' => 'ghi', 'Gohir.A09G093300' => 'ghi', 'Gohir.A09G105400' => 'ghi', 'Gohir.A09G105500' => 'ghi', 'Gohir.D06G154600' => 'ghi', 'Gohir.D07G120200' => 'ghi', 'Gohir.D08G013900' => 'ghi', 'Gohir.D09G093100' => 'ghi', 'Gohir.D09G102200' => 'ghi', 'Gohir.D09G102300' => 'ghi', 'Gorai.001G129400' => 'gra', 'Gorai.004G008200' => 'gra', 'Gorai.006G109800' => 'gra', 'Gorai.006G119500' => 'gra', 'Gorai.006G121300' => 'gra', 'Gorai.010G180700' => 'gra', 'GSVIVG01012716001' => 'vvi', 'GSVIVG01025118001' => 'vvi', 'GSVIVG01030439001' => 'vvi', 'GSVIVG01031397001' => 'vvi', 'HanXRQChr01g0004201' => 'han', 'HanXRQChr02g0054941' => 'han', 'HanXRQChr05g0141811' => 'han', 'HanXRQChr07g0197751' => 'han', 'HanXRQChr11g0346691' => 'han', 'HanXRQChr13g0396971' => 'han', 'HanXRQChr14g0432951' => 'han', 'HanXRQChr14g0452001' => 'han', 'HanXRQChr15g0496681' => 'han', 'HanXRQChr17g0557491' => 'han', 'HanXRQChr17g0557501' => 'han', 'Haze_06809' => 'cav', 'Haze_12852' => 'cav', 'Haze_15850' => 'cav', 'Haze_23446' => 'cav', 'Haze_23942' => 'cav', 'Haze_23943' => 'cav', 'Hma1.2p1_0091F.1_g046450' => 'hma', 'Hma1.2p1_0128F.1_g059910' => 'hma', 'Hma1.2p1_0249F.1_g102260' => 'hma', 'Hma1.2p1_0453F.1_g156190' => 'hma', 'Hma1.2p1_0695F.1_g204380' => 'hma', 'Hma1.2p1_0749F.1_g212650' => 'hma', 'Hma1.2p1_2156F.1_g315420' => 'hma', 'Hma1.2p1_2686F.1_g326940' => 'hma', 'HPP92_006428' => 'vpl', 'HPP92_012069' => 'vpl', 'HPP92_014129' => 'vpl', 'HPP92_014133' => 'vpl', 'HPP92_017315' => 'vpl', 'HPP92_026445' => 'vpl', 'HPP92_026446' => 'vpl', 'Hund00774' => 'sun', 'Hund07682' => 'sun', 'Hund21413' => 'sun', 'Hund23462' => 'sun', 'Hund23463' => 'sun', 'Lalb_Chr03g0027911' => 'lal', 'Lalb_Chr13g0304271' => 'lal', 'Lalb_Chr19g0137471' => 'lal', 'Lalb_Chr22g0350651' => 'lal', 'Lalb_Chr24g0395151' => 'lal', 'Lj1A1231T40' => 'lonja', 'Lj1A221T48' => 'lonja', 'Lj1C924T12' => 'lonja', 'Lj2C993G6' => 'lonja', 'Lj3g0005790' => 'lja', 'Lj3g0015432' => 'lja', 'Lj3g0017722' => 'lja', 'Lj3g0018497' => 'lja', 'Lj4g0025071' => 'lja', 'Lsat_1_v5_gn_1_129680' => 'lsa', 'Lsat_1_v5_gn_2_25321' => 'lsa', 'Lsat_1_v5_gn_2_95461' => 'lsa', 'Lsat_1_v5_gn_4_159620' => 'lsa', 'Lsat_1_v5_gn_6_41301' => 'lsa', 'Lsat_1_v5_gn_6_74660' => 'lsa', 'Lsat_1_v5_gn_7_11520' => 'lsa', 'Lsat_1_v5_gn_9_67680' => 'lsa', 'Manes.04G008300' => 'mes', 'Manes.04G008400' => 'mes', 'Manes.04G026500' => 'mes', 'Manes.10G135300' => 'mes', 'Manes.11G157300' => 'mes', 'Manes.12G074000' => 'mes', 'Manes.16G006200' => 'mes', 'Manes.17G026400' => 'mes', 'Mapoly0024s0086' => 'mpo', 'Mapoly0024s0087' => 'mpo', 'Mapoly0071s0057' => 'mpo', 'Mapoly0204s0012' => 'mpo', 'MBI04_g37681_MAGBIO' => 'mbi', 'MBI05_g17779_MAGBIO' => 'mbi', 'MBI12_g31184_MAGBIO' => 'mbi', 'MBI17_g11083_MAGBIO' => 'mbi', 'MBI18_g03883_MAGBIO' => 'mbi', 'MBI18_g28940_MAGBIO' => 'mbi', 'MCO01G690' => 'mco', 'MD03G1109900' => 'mdo', 'MD03G1134800' => 'mdo', 'MD05G1348000' => 'mdo', 'MD10G1322400' => 'mdo', 'MD11G1123300' => 'mdo', 'MD11G1157600' => 'mdo', 'Medtr2g084875' => 'mtr', 'Medtr2g088130' => 'mtr', 'Medtr4g055310' => 'mtr', 'Medtr4g061070' => 'mtr', 'Medtr4g132250' => 'mtr', 'MELO3C004795.2' => 'cme', 'MELO3C004797.2' => 'cme', 'MELO3C007396.2' => 'cme', 'MELO3C019277.2' => 'cme', 'MELO3C021449.2' => 'cme', 'MELO3C025736.2' => 'cme', 'Migut.D02175' => 'egut', 'Migut.H01573' => 'egut', 'Migut.M01327' => 'egut', 'Migut.N02513' => 'egut', 'MSTRG.14638' => 'ama', 'MSTRG.18632' => 'ama', 'MSTRG.7203' => 'ama', 'Nitab4.5_0000533g0140' => 'nta', 'Nitab4.5_0000888g0150' => 'nta', 'Nitab4.5_0001453g0040' => 'nta', 'Nitab4.5_0002827g0090' => 'nta', 'Nitab4.5_0003082g0040' => 'nta', 'Nitab4.5_0007799g0040' => 'nta', 'Nitab4.5_0008983g0010' => 'nta', 'Nitab4.5_0009017g0020' => 'nta', 'Nn1g02132' => 'nnu', 'Nn1g03492' => 'nnu', 'Nn1g03493' => 'nnu', 'Nn1g03494' => 'nnu', 'Nn1g07164' => 'nnu', 'Nn1g07291' => 'nnu', 'Nn2g10655' => 'nnu', 'Nn2g11652' => 'nnu', 'Nn2g14008' => 'nnu', 'Nn3g17476' => 'nnu', 'Nn3g17477' => 'nnu', 'Nn4g22370' => 'nnu', 'Nn4g25255' => 'nnu', 'Nn5g27755' => 'nnu', 'Nn6g34260' => 'nnu', 'Nn6g35041' => 'nnu', 'Oeu005924.1' => 'oeu', 'Oeu008383.1' => 'oeu', 'Oeu014928.1' => 'oeu', 'Oeu019889.1' => 'oeu', 'Oeu022271.1' => 'oeu', 'Oeu025271.1' => 'oeu', 'Oeu036302.1' => 'oeu', 'Oeu044100.1' => 'oeu', 'Os01g0528300' => 'osa', 'Os03g0286200' => 'osa', 'Os04g0406600' => 'osa', 'Os07g0512000' => 'osa', 'Os07g0694600' => 'osa', 'Os08g0411000' => 'osa', 'Os09g0565700' => 'osa', 'Os09g0566050' => 'osa', 'Os10g0523700' => 'osa', 'Peaxi162Scf00002g00514' => 'pax', 'Peaxi162Scf00047g01817' => 'pax', 'Peaxi162Scf00114g00001' => 'pax', 'Peaxi162Scf00147g00613' => 'pax', 'Peaxi162Scf00389g00425' => 'pax', 'PGR042G1139' => 'pgr', 'PGR042G3273' => 'pgr', 'PGR102G2180' => 'pgr', 'PGR119G0234' => 'pgr', 'PGR119G0668' => 'pgr', 'PGSC0003DMG400007122' => 'stu', 'PGSC0003DMG400016478' => 'stu', 'PGSC0003DMG400025374' => 'stu', 'PGSC0003DMG400026536' => 'stu', 'Phvul.003G079600' => 'pvu', 'Phvul.005G115600' => 'pvu', 'Phvul.005G127100' => 'pvu', 'Phvul.006G149500' => 'pvu', 'Phvul.006G149600' => 'pvu', 'Phvul.011G071800' => 'pvu', 'Phvul.011G090400' => 'pvu', 'Potri.004G013400' => 'ptr', 'Potri.004G188100' => 'ptr', 'Potri.008G195500' => 'ptr', 'Potri.009G148800' => 'ptr', 'Potri.011G004700' => 'ptr', 'Pp3c17_22810' => 'ppa', 'Pp3c18_4480' => 'ppa', 'Pp3c19_13030' => 'ppa', 'Pp3c1_33620' => 'ppa', 'Pp3c2_9380' => 'ppa', 'PRCOL_00001023' => 'pco', 'Prupe.3G216300' => 'ppe', 'Prupe.4G019500' => 'ppe', 'Prupe.6G092500' => 'ppe', 'Prupe.6G119200' => 'ppe', 'Psat0s1945g0080' => 'psa', 'Psat0s4167g0040' => 'psa', 'Psat1g185800' => 'psa', 'Psat4g006440' => 'psa', 'Psat4g006480' => 'psa', 'Psat4g168120' => 'psa', 'Psat5g255680' => 'psa', 'Psat5g261760' => 'psa', 'Psat7g222120' => 'psa', 'PSO063G7252' => 'pso', 'PSO170G4778' => 'pso', 'PSO210G2249' => 'pso', 'PSO339G2411' => 'pso', 'PSO339G2457' => 'pso', 'PSO339G2854' => 'pso', 'PSO339G4288' => 'pso', 'PSO339G4615' => 'pso', 'PSO384G2796' => 'pso', 'PSO384G2940' => 'pso', 'PSO384G4227' => 'pso', 'PSO478G1425' => 'pso', 'PSO541G3863' => 'pso', 'PSO675G0507' => 'pso', 'PSO782G0338' => 'pso', 'PSO832G0644' => 'pso', 'QL01p013664' => 'qlo', 'QL01p036598' => 'qlo', 'QL05p072984' => 'qlo', 'QL08p005768' => 'qlo', 'QL08p032743' => 'qlo', 'QL93p0073_0439' => 'qlo', 'QL93p0073_0444' => 'qlo', 'RcHm_v2.0_Chr5g0002851' => 'rch', 'RcHm_v2.0_Chr5g0055201' => 'rch', 'RcHm_v2.0_Chr5g0061191' => 'rch', 'RcHm_v2.0_Chr7g0203231' => 'rch', 'Rhsim01G0208100' => 'rsi', 'Rhsim01G0208200' => 'rsi', 'Rhsim02G0106500' => 'rsi', 'Rhsim03G0107900' => 'rsi', 'Rhsim06G0163400' => 'rsi', 'Rhsim13G0105200' => 'rsi', 'Sabra04G0006300' => 'sbr', 'Sabra04G0127000' => 'sbr', 'Sabra08G0148700' => 'sbr', 'Sabra09G0117400' => 'sbr', 'SalBow1G3326' => 'sbo', 'SalBow3G3228' => 'sbo', 'SalBow6G1634' => 'sbo', 'SalBow6G3603' => 'sbo', 'SalBow6G5266' => 'sbo', 'SalBow7G2265' => 'sbo', 'SalBow8G0850' => 'sbo', 'SalBow8G2592' => 'sbo', 'Sc05g0009240' => 'sci', 'Sc12g0002300' => 'sci', 'Sc21g0000100' => 'sci', 'Sc21g0004720' => 'sci', 'Sed0002949' => 'sed', 'Sed0004114' => 'sed', 'Sed0004306' => 'sed', 'Sed0006172' => 'sed', 'Sed0008413' => 'sed', 'Sed0013809' => 'sed', 'Sed0019556' => 'sed', 'SEGI_03570' => 'sgi', 'SEGI_07859' => 'sgi', 'SEGI_15042' => 'sgi', 'SEGI_16263' => 'sgi', 'SEGI_16552' => 'sgi', 'SEGI_24331' => 'sgi', 'SEGI_27316' => 'sgi', 'SEGI_29521' => 'sgi', 'SEGI_41342' => 'sgi', 'SGA_v2.0_scaffold27G11617' => 'sas', 'SGA_v2.0_scaffold316G48428' => 'sas', 'SGA_v2.0_scaffold49G18261' => 'sas', 'SGA_v2.0_scaffold7G03831' => 'sas', 'SGA_v2.0_scaffold93G28359' => 'sas', 'SHI02210' => 'shi', 'SHI06028' => 'shi', 'SHI06321' => 'shi', 'SMO111G0012' => 'smo', 'SMO228G0080' => 'smo', 'SMO356G0756' => 'smo', 'Solyc02g080620.3' => 'sly', 'Solyc06g074530.1' => 'sly', 'Solyc11g066890.1' => 'sly', 'Solyc11g072520.3' => 'sly', 'Sopen02g025330' => 'spe', 'Sopen06g031000' => 'spe', 'Sopen09g008240' => 'spe', 'Sopen09g025210' => 'spe', 'Sopen11g026600' => 'spe', 'Sopen11g030170' => 'spe', 'Sp1g10420' => 'spa', 'Sp3g06570' => 'spa', 'Sp4g10660' => 'spa', 'Sp5g16460' => 'spa', 'Sp6g22710' => 'spa', 'TAR365G0112' => 'tar', 'TAR369G0717' => 'tar', 'TAR374G0976' => 'tar', 'TAR623G1128' => 'tar', 'TAR626G1937' => 'tar', 'TAR627G0123' => 'tar', 'TAR628G0305' => 'tar', 'TAR636G1176' => 'tar', 'TAR636G2442' => 'tar', 'THA.LOC104800556' => 'tha', 'THA.LOC104809501' => 'tha', 'THA.LOC104815126' => 'tha', 'THA.LOC104815732' => 'tha', 'THA.LOC104823528' => 'tha', 'Thecc.02G365600' => 'tca', 'Thecc.06G222300' => 'tca', 'Thecc.09G261800' => 'tca', 'Thecc.09G291400' => 'tca', 'Thhalv10003028m.g' => 'esa', 'Thhalv10007886m.g' => 'esa', 'Thhalv10016085m.g' => 'esa', 'Thhalv10016681m.g' => 'esa', 'Thhalv10020951m.g' => 'esa', 'TPR.G15598' => 'tpr', 'TPR.G29305' => 'tpr', 'TPR.G32395' => 'tpr', 'TPR.G36998' => 'tpr', 'TPR.G4227' => 'tpr', 'TWI18G1433' => 'twi', 'TWI31G0755' => 'twi', 'TWI38G0912' => 'twi', 'TWI75G1097' => 'twi', 'TWI75G1619' => 'twi', 'TWI79G1336' => 'twi', 'unitig_0.g943' => 'ugi', 'unitig_0.g944' => 'ugi', 'unitig_22.g6646' => 'ugi', 'unitig_37.g12681' => 'ugi', 'unitig_8.g3290' => 'ugi', 'vmacro03278' => 'vma', 'vmacro12197' => 'vma', 'vmacro14478' => 'vma', 'vmacro15787' => 'vma', 'vmacro15789' => 'vma', 'vmacro15790' => 'vma', 'vmacro15806' => 'vma', 'vmacro22907' => 'vma', 'vmacro22908' => 'vma', 'vmacro22909' => 'vma', 'vmacro23108' => 'vma', 'VMungo0540G0540' => 'vmu', 'VMungo0540G2468' => 'vmu', 'VMungo1080G0390' => 'vmu', 'VMungo1080G1165' => 'vmu', 'VMungo1127G0170' => 'vmu', 'VMungo1127G2099' => 'vmu', 'VMungo1215G3013' => 'vmu', 'Zm00001eb013110' => 'zma', 'Zm00001eb084260' => 'zma', 'Zm00001eb096110' => 'zma', 'Zm00001eb217510' => 'zma', 'Zm00001eb322550' => 'zma', 'Zm00001eb390770' => 'zma', 'Zm00001eb397170' => 'zma', 'Zm00001eb404610' => 'zma', 'Zm00001eb421790' => 'zma' ), 'gf_id' => 'HOM05D000911', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000911' ), 'data_identifier' => 'HOM05D000911', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000911', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27780' => 'bna', 'A03p35380' => 'bna', 'A04p21160' => 'bna', 'A05p40570' => 'bna', 'A06p26900' => 'bna', 'A08p33230' => 'bna', 'A09p65960' => 'bna', 'A10p18290' => 'bna', 'Aa31LG1G12990' => 'aar', 'Aa31LG1G2980' => 'aar', 'Aa31LG4G14320' => 'aar', 'Aa31LG7G11800' => 'aar', 'Aa31sc36G50' => 'aar', 'Aa31sc36G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3721' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5459' => 'aag', 'Actinidia03028' => 'ach', 'Actinidia03753' => 'ach', 'Actinidia04187' => 'ach', 'Actinidia05509' => 'ach', 'Actinidia24180' => 'ach', 'Actinidia26906' => 'ach', 'Actinidia37097' => 'ach', 'Actinidia38249' => 'ach', 'Ah.01g003470' => 'amhyb', 'Ah.01g004580' => 'amhyb', 'Ah.01g014850' => 'amhyb', 'Ah.01g016830' => 'amhyb', 'Ah.14g088000' => 'amhyb', 'AL1G22980' => 'aly', 'AL3G18990' => 'aly', 'AL4G22440' => 'aly', 'AL4G33180' => 'aly', 'AL5G22920' => 'aly', 'AL6G33660' => 'aly', 'AL8G20720' => 'aly', 'Aqoxy1G00935' => 'aox', 'Aqoxy1G02094' => 'aox', 'Aqoxy2G01239' => 'aox', 'Aqoxy4G01870' => 'aox', 'Aqoxy7G00450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.36ZVTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71EM27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5D6C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH3WRE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3NCM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RIM768' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YB5YRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z36GDV' => 'arhy', 'AT1G08250' => 'ath', 'AT1G11790' => 'ath', 'AT2G27820' => 'ath', 'AT3G07630' => 'ath', 'AT3G44720' => 'ath', 'AT5G22630' => 'ath', 'ATR0693G304' => 'atr', 'ATR0794G109' => 'atr', 'ATR0820G120' => 'atr', 'ATR1159G064' => 'atr', 'Atru.chr10.2239' => 'acertr', 'Atru.chr3.3371' => 'acertr', 'Atru.chr6.3202' => 'acertr', 'AUR62006499' => 'cqu', 'AUR62012718' => 'cqu', 'AUR62021938' => 'cqu', 'AUR62023932' => 'cqu', 'AUR62025034' => 'cqu', 'AUR62025035' => 'cqu', 'AUR62038307' => 'cqu', 'AUR62043466' => 'cqu', 'BcaB02g10748' => 'bca', 'BcaB03g13231' => 'bca', 'BcaB03g14689' => 'bca', 'BcaB05g22716' => 'bca', 'BcaB06g28172' => 'bca', 'BcaB08g36413' => 'bca', 'BcaC01g02186' => 'bca', 'BcaC01g04272' => 'bca', 'BcaC02g08080' => 'bca', 'BcaC02g08227' => 'bca', 'BcaC03g13901' => 'bca', 'BcaC04g19593' => 'bca', 'BcaC04g20874' => 'bca', 'BcaC05g29557' => 'bca', 'BcaC06g35505' => 'bca', 'BcaC07g41954' => 'bca', 'BcaC07g41955' => 'bca', 'BcaC07g41956' => 'bca', 'BcaC07g42519' => 'bca', 'BcaC07g42520' => 'bca', 'BcaC07g42523' => 'bca', 'BcaC07g42524' => 'bca', 'BcaC07g42525' => 'bca', 'BcaC08g47480' => 'bca', 'BcaC08g47481' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00530' => 'bna', 'BolC2t07178H' => 'bol', 'BolC3t16567H' => 'bol', 'BolC4t27234H' => 'bol', 'BolC5t29728H' => 'bol', 'BolC5t34622H' => 'bol', 'BolC6t40321H' => 'bol', 'BolC7t42028H' => 'bol', 'BolC8t49125H' => 'bol', 'BolC8t52538H' => 'bol', 'BolC8t52539H' => 'bol', 'BolC9t56681H' => 'bol', 'BolC9t58266H' => 'bol', 'BolSC21t60294H' => 'bol', 'BraA02t05670Z' => 'bra', 'BraA03t12716Z' => 'bra', 'BraA04t17685Z' => 'bra', 'BraA05t22788Z' => 'bra', 'BraA06t24032Z' => 'bra', 'BraA06t25625Z' => 'bra', 'BraA07t27930Z' => 'bra', 'BraA08t35242Z' => 'bra', 'BraA09t38609Z' => 'bra', 'BraA10t43905Z' => 'bra', 'C02p11060' => 'bna', 'C03p42990' => 'bna', 'C03p67310' => 'bna', 'C04p56990' => 'bna', 'C04p58660' => 'bna', 'C05p09890' => 'bna', 'C05p59680' => 'bna', 'C06p19830' => 'bna', 'C06p53040' => 'bna', 'C07p15230' => 'bna', 'C08p50070' => 'bna', 'C08p50090' => 'bna', 'C09p38330' => 'bna', 'C09p53940' => 'bna', 'CAN.G1014.1' => 'can', 'CAN.G644.30' => 'can', 'CAN.G84.47' => 'can', 'CAN.G919.8' => 'can', 'CANSAT54G0113' => 'cansat', 'CANSAT54G1286' => 'cansat', 'CANSAT64G1020' => 'cansat', 'CARHR008080' => 'chi', 'CARHR008090' => 'chi', 'CARHR012130' => 'chi', 'CARHR038390' => 'chi', 'CARHR082330' => 'chi', 'CARHR120520' => 'chi', 'CARHR151470' => 'chi', 'CARHR190950' => 'chi', 'Carub.0001s0760' => 'cru', 'Carub.0001s1146' => 'cru', 'Carub.0003s0721' => 'cru', 'Carub.0004s0858' => 'cru', 'Carub.0005s1040' => 'cru', 'Carub.0006s2035' => 'cru', 'Carub.0015s0005' => 'cru', 'Ca_01607_v3' => 'car', 'Ca_01677_v3' => 'car', 'Ca_06087_v3' => 'car', 'Ca_19238_v3' => 'car', 'Ca_19373_v3' => 'car', 'Ca_21079_v3' => 'car', 'CBR_g54016' => 'cbr', 'CBR_g54018' => 'cbr', 'CBR_g54020' => 'cbr', 'Cc01_g09780' => 'ccan', 'Cc01_g11680' => 'ccan', 'Cc02_g15610' => 'ccan', 'Cc05_g04350' => 'ccan', 'Cc09_g01580' => 'ccan', 'CDE01G0795' => 'cde', 'CDE02G2024' => 'cde', 'CDE02G2260' => 'cde', 'CDE02G4561' => 'cde', 'CDE05G2733' => 'cde', 'CDE05G3422' => 'cde', 'CDE06G2003' => 'cde', 'CDE08G0576' => 'cde', 'CDE09G0048' => 'cde', 'CDE11G0805' => 'cde', 'Cfa003644' => 'cfa', 'Cfa006290' => 'cfa', 'Cfa010080' => 'cfa', 'Cfa011376' => 'cfa', 'Cfa011576' => 'cfa', 'Cfa011577' => 'cfa', 'Cfa014389' => 'cfa', 'Ciclev10006044m.g' => 'ccl', 'Ciclev10006954m.g' => 'ccl', 'Ciclev10015131m.g' => 'ccl', 'Ciclev10015580m.g' => 'ccl', 'Ciclev10028359m.g' => 'ccl', 'Ciclev10028573m.g' => 'ccl', 'CiPaw.03G159300' => 'cil', 'CiPaw.04G115100' => 'cil', 'CiPaw.09G092800' => 'cil', 'CiPaw.10G071800' => 'cil', 'CiPaw.13G105800' => 'cil', 'CiPaw.13G141000' => 'cil', 'CiPaw.14G103400' => 'cil', 'ClCG01G012700' => 'cla', 'ClCG01G012720' => 'cla', 'ClCG01G021920' => 'cla', 'ClCG02G008870' => 'cla', 'ClCG02G020840' => 'cla', 'ClCG02G021930' => 'cla', 'COL.COLO4_19302' => 'col', 'COL.COLO4_25262' => 'col', 'COL.COLO4_31788' => 'col', 'Cpa.g.c34684' => 'cpa', 'Cpa.g.c36520.1' => 'cpa', 'Cpa.g.c45626' => 'cpa', 'Cpa.g.sc121.17' => 'cpa', 'Cpa.g.sc13.22' => 'cpa', 'Cpa.g.sc87.88' => 'cpa', 'Cre06.g261800' => 'cre', 'CsaV3_1G014500' => 'csa', 'CsaV3_1G014510' => 'csa', 'CsaV3_2G034880' => 'csa', 'CsaV3_6G014760' => 'csa', 'CsaV3_6G021500' => 'csa', 'CsaV3_6G048980' => 'csa', 'CSS0002511' => 'camsi', 'CSS0007556' => 'camsi', 'CSS0008532' => 'camsi', 'CSS0009709' => 'camsi', 'CSS0010486' => 'camsi', 'CSS0016768' => 'camsi', 'CSS0023512' => 'camsi', 'CSS0025341' => 'camsi', 'CSS0027999' => 'camsi', 'CSS0028944' => 'camsi', 'CSS0032292' => 'camsi', 'CSS0032464' => 'camsi', 'CSS0037153' => 'camsi', 'CSS0039256' => 'camsi', 'CSS0048392' => 'camsi', 'CSS0050458' => 'camsi', 'DCAR_004224' => 'dca', 'DCAR_006147' => 'dca', 'DCAR_006465' => 'dca', 'DCAR_008159' => 'dca', 'DCAR_012164' => 'dca', 'DCAR_019764' => 'dca', 'Dinv05418' => 'din', 'Dinv10839' => 'din', 'Dinv12521' => 'din', 'Dinv13900' => 'din', 'Dinv29426' => 'din', 'Duzib150G0263' => 'dzi', 'Duzib168G1178' => 'dzi', 'Duzib168G1924' => 'dzi', 'Duzib170G0299' => 'dzi', 'Duzib170G0813' => 'dzi', 'Duzib235G1128' => 'dzi', 'Duzib248G1060' => 'dzi', 'ECA232G1910' => 'eca', 'ECA233G4621' => 'eca', 'ECA238G1216' => 'eca', 'ECA238G1784' => 'eca', 'ECA248G1242' => 'eca', 'EL10Ac8g20071' => 'bvu', 'EL10Ac9g21086' => 'bvu', 'EL10Ac9g22407' => 'bvu', 'EL10Ac9g22412' => 'bvu', 'Eucgr.A01119' => 'egr', 'Eucgr.E04043' => 'egr', 'Eucgr.J00428' => 'egr', 'Eucgr.J00958' => 'egr', 'FAN11G3091' => 'fan', 'FAN11G3651' => 'fan', 'FAN16G2566' => 'fan', 'FAN21G3155' => 'fan', 'FAN21G3400' => 'fan', 'FAN21G3543' => 'fan', 'FAN25G0234' => 'fan', 'FAN25G1422' => 'fan', 'FAN25G3392' => 'fan', 'FvH4_3g01940' => 'fve', 'FvH4_3g29870' => 'fve', 'FvH4_3g33680' => 'fve', 'Glyma.09G004200' => 'gma', 'Glyma.11G151288' => 'gma', 'Glyma.11G189100' => 'gma', 'Glyma.12G072500' => 'gma', 'Glyma.12G085500' => 'gma', 'Glyma.12G181800' => 'gma', 'Glyma.12G193000' => 'gma', 'Glyma.13G309300' => 'gma', 'Glyma.13G319000' => 'gma', 'Glyma.17G012600' => 'gma', 'Gohir.A06G148600' => 'ghi', 'Gohir.A07G115800' => 'ghi', 'Gohir.A08G003600' => 'ghi', 'Gohir.A09G093300' => 'ghi', 'Gohir.A09G105400' => 'ghi', 'Gohir.A09G105500' => 'ghi', 'Gohir.D06G154600' => 'ghi', 'Gohir.D07G120200' => 'ghi', 'Gohir.D08G013900' => 'ghi', 'Gohir.D09G093100' => 'ghi', 'Gohir.D09G102200' => 'ghi', 'Gohir.D09G102300' => 'ghi', 'Gorai.001G129400' => 'gra', 'Gorai.004G008200' => 'gra', 'Gorai.006G109800' => 'gra', 'Gorai.006G119500' => 'gra', 'Gorai.006G121300' => 'gra', 'Gorai.010G180700' => 'gra', 'GSVIVG01012716001' => 'vvi', 'GSVIVG01025118001' => 'vvi', 'GSVIVG01030439001' => 'vvi', 'GSVIVG01031397001' => 'vvi', 'HanXRQChr01g0004201' => 'han', 'HanXRQChr02g0054941' => 'han', 'HanXRQChr05g0141811' => 'han', 'HanXRQChr07g0197751' => 'han', 'HanXRQChr11g0346691' => 'han', 'HanXRQChr13g0396971' => 'han', 'HanXRQChr14g0432951' => 'han', 'HanXRQChr14g0452001' => 'han', 'HanXRQChr15g0496681' => 'han', 'HanXRQChr17g0557491' => 'han', 'HanXRQChr17g0557501' => 'han', 'Haze_06809' => 'cav', 'Haze_12852' => 'cav', 'Haze_15850' => 'cav', 'Haze_23446' => 'cav', 'Haze_23942' => 'cav', 'Haze_23943' => 'cav', 'Hma1.2p1_0091F.1_g046450' => 'hma', 'Hma1.2p1_0128F.1_g059910' => 'hma', 'Hma1.2p1_0249F.1_g102260' => 'hma', 'Hma1.2p1_0453F.1_g156190' => 'hma', 'Hma1.2p1_0695F.1_g204380' => 'hma', 'Hma1.2p1_0749F.1_g212650' => 'hma', 'Hma1.2p1_2156F.1_g315420' => 'hma', 'Hma1.2p1_2686F.1_g326940' => 'hma', 'HPP92_006428' => 'vpl', 'HPP92_012069' => 'vpl', 'HPP92_014129' => 'vpl', 'HPP92_014133' => 'vpl', 'HPP92_017315' => 'vpl', 'HPP92_026445' => 'vpl', 'HPP92_026446' => 'vpl', 'Hund00774' => 'sun', 'Hund07682' => 'sun', 'Hund21413' => 'sun', 'Hund23462' => 'sun', 'Hund23463' => 'sun', 'Lalb_Chr03g0027911' => 'lal', 'Lalb_Chr13g0304271' => 'lal', 'Lalb_Chr19g0137471' => 'lal', 'Lalb_Chr22g0350651' => 'lal', 'Lalb_Chr24g0395151' => 'lal', 'Lj1A1231T40' => 'lonja', 'Lj1A221T48' => 'lonja', 'Lj1C924T12' => 'lonja', 'Lj2C993G6' => 'lonja', 'Lj3g0005790' => 'lja', 'Lj3g0015432' => 'lja', 'Lj3g0017722' => 'lja', 'Lj3g0018497' => 'lja', 'Lj4g0025071' => 'lja', 'Lsat_1_v5_gn_1_129680' => 'lsa', 'Lsat_1_v5_gn_2_25321' => 'lsa', 'Lsat_1_v5_gn_2_95461' => 'lsa', 'Lsat_1_v5_gn_4_159620' => 'lsa', 'Lsat_1_v5_gn_6_41301' => 'lsa', 'Lsat_1_v5_gn_6_74660' => 'lsa', 'Lsat_1_v5_gn_7_11520' => 'lsa', 'Lsat_1_v5_gn_9_67680' => 'lsa', 'Manes.04G008300' => 'mes', 'Manes.04G008400' => 'mes', 'Manes.04G026500' => 'mes', 'Manes.10G135300' => 'mes', 'Manes.11G157300' => 'mes', 'Manes.12G074000' => 'mes', 'Manes.16G006200' => 'mes', 'Manes.17G026400' => 'mes', 'Mapoly0024s0086' => 'mpo', 'Mapoly0024s0087' => 'mpo', 'Mapoly0071s0057' => 'mpo', 'Mapoly0204s0012' => 'mpo', 'MBI04_g37681_MAGBIO' => 'mbi', 'MBI05_g17779_MAGBIO' => 'mbi', 'MBI12_g31184_MAGBIO' => 'mbi', 'MBI17_g11083_MAGBIO' => 'mbi', 'MBI18_g03883_MAGBIO' => 'mbi', 'MBI18_g28940_MAGBIO' => 'mbi', 'MCO01G690' => 'mco', 'MD03G1109900' => 'mdo', 'MD03G1134800' => 'mdo', 'MD05G1348000' => 'mdo', 'MD10G1322400' => 'mdo', 'MD11G1123300' => 'mdo', 'MD11G1157600' => 'mdo', 'Medtr2g084875' => 'mtr', 'Medtr2g088130' => 'mtr', 'Medtr4g055310' => 'mtr', 'Medtr4g061070' => 'mtr', 'Medtr4g132250' => 'mtr', 'MELO3C004795.2' => 'cme', 'MELO3C004797.2' => 'cme', 'MELO3C007396.2' => 'cme', 'MELO3C019277.2' => 'cme', 'MELO3C021449.2' => 'cme', 'MELO3C025736.2' => 'cme', 'Migut.D02175' => 'egut', 'Migut.H01573' => 'egut', 'Migut.M01327' => 'egut', 'Migut.N02513' => 'egut', 'MSTRG.14638' => 'ama', 'MSTRG.18632' => 'ama', 'MSTRG.7203' => 'ama', 'Nitab4.5_0000533g0140' => 'nta', 'Nitab4.5_0000888g0150' => 'nta', 'Nitab4.5_0001453g0040' => 'nta', 'Nitab4.5_0002827g0090' => 'nta', 'Nitab4.5_0003082g0040' => 'nta', 'Nitab4.5_0007799g0040' => 'nta', 'Nitab4.5_0008983g0010' => 'nta', 'Nitab4.5_0009017g0020' => 'nta', 'Nn1g02132' => 'nnu', 'Nn1g03492' => 'nnu', 'Nn1g03493' => 'nnu', 'Nn1g03494' => 'nnu', 'Nn1g07164' => 'nnu', 'Nn1g07291' => 'nnu', 'Nn2g10655' => 'nnu', 'Nn2g11652' => 'nnu', 'Nn2g14008' => 'nnu', 'Nn3g17476' => 'nnu', 'Nn3g17477' => 'nnu', 'Nn4g22370' => 'nnu', 'Nn4g25255' => 'nnu', 'Nn5g27755' => 'nnu', 'Nn6g34260' => 'nnu', 'Nn6g35041' => 'nnu', 'Oeu005924.1' => 'oeu', 'Oeu008383.1' => 'oeu', 'Oeu014928.1' => 'oeu', 'Oeu019889.1' => 'oeu', 'Oeu022271.1' => 'oeu', 'Oeu025271.1' => 'oeu', 'Oeu036302.1' => 'oeu', 'Oeu044100.1' => 'oeu', 'Os01g0528300' => 'osa', 'Os03g0286200' => 'osa', 'Os04g0406600' => 'osa', 'Os07g0512000' => 'osa', 'Os07g0694600' => 'osa', 'Os08g0411000' => 'osa', 'Os09g0565700' => 'osa', 'Os09g0566050' => 'osa', 'Os10g0523700' => 'osa', 'Peaxi162Scf00002g00514' => 'pax', 'Peaxi162Scf00047g01817' => 'pax', 'Peaxi162Scf00114g00001' => 'pax', 'Peaxi162Scf00147g00613' => 'pax', 'Peaxi162Scf00389g00425' => 'pax', 'PGR042G1139' => 'pgr', 'PGR042G3273' => 'pgr', 'PGR102G2180' => 'pgr', 'PGR119G0234' => 'pgr', 'PGR119G0668' => 'pgr', 'PGSC0003DMG400007122' => 'stu', 'PGSC0003DMG400016478' => 'stu', 'PGSC0003DMG400025374' => 'stu', 'PGSC0003DMG400026536' => 'stu', 'Phvul.003G079600' => 'pvu', 'Phvul.005G115600' => 'pvu', 'Phvul.005G127100' => 'pvu', 'Phvul.006G149500' => 'pvu', 'Phvul.006G149600' => 'pvu', 'Phvul.011G071800' => 'pvu', 'Phvul.011G090400' => 'pvu', 'Potri.004G013400' => 'ptr', 'Potri.004G188100' => 'ptr', 'Potri.008G195500' => 'ptr', 'Potri.009G148800' => 'ptr', 'Potri.011G004700' => 'ptr', 'Pp3c17_22810' => 'ppa', 'Pp3c18_4480' => 'ppa', 'Pp3c19_13030' => 'ppa', 'Pp3c1_33620' => 'ppa', 'Pp3c2_9380' => 'ppa', 'PRCOL_00001023' => 'pco', 'Prupe.3G216300' => 'ppe', 'Prupe.4G019500' => 'ppe', 'Prupe.6G092500' => 'ppe', 'Prupe.6G119200' => 'ppe', 'Psat0s1945g0080' => 'psa', 'Psat0s4167g0040' => 'psa', 'Psat1g185800' => 'psa', 'Psat4g006440' => 'psa', 'Psat4g006480' => 'psa', 'Psat4g168120' => 'psa', 'Psat5g255680' => 'psa', 'Psat5g261760' => 'psa', 'Psat7g222120' => 'psa', 'PSO063G7252' => 'pso', 'PSO170G4778' => 'pso', 'PSO210G2249' => 'pso', 'PSO339G2411' => 'pso', 'PSO339G2457' => 'pso', 'PSO339G2854' => 'pso', 'PSO339G4288' => 'pso', 'PSO339G4615' => 'pso', 'PSO384G2796' => 'pso', 'PSO384G2940' => 'pso', 'PSO384G4227' => 'pso', 'PSO478G1425' => 'pso', 'PSO541G3863' => 'pso', 'PSO675G0507' => 'pso', 'PSO782G0338' => 'pso', 'PSO832G0644' => 'pso', 'QL01p013664' => 'qlo', 'QL01p036598' => 'qlo', 'QL05p072984' => 'qlo', 'QL08p005768' => 'qlo', 'QL08p032743' => 'qlo', 'QL93p0073_0439' => 'qlo', 'QL93p0073_0444' => 'qlo', 'RcHm_v2.0_Chr5g0002851' => 'rch', 'RcHm_v2.0_Chr5g0055201' => 'rch', 'RcHm_v2.0_Chr5g0061191' => 'rch', 'RcHm_v2.0_Chr7g0203231' => 'rch', 'Rhsim01G0208100' => 'rsi', 'Rhsim01G0208200' => 'rsi', 'Rhsim02G0106500' => 'rsi', 'Rhsim03G0107900' => 'rsi', 'Rhsim06G0163400' => 'rsi', 'Rhsim13G0105200' => 'rsi', 'Sabra04G0006300' => 'sbr', 'Sabra04G0127000' => 'sbr', 'Sabra08G0148700' => 'sbr', 'Sabra09G0117400' => 'sbr', 'SalBow1G3326' => 'sbo', 'SalBow3G3228' => 'sbo', 'SalBow6G1634' => 'sbo', 'SalBow6G3603' => 'sbo', 'SalBow6G5266' => 'sbo', 'SalBow7G2265' => 'sbo', 'SalBow8G0850' => 'sbo', 'SalBow8G2592' => 'sbo', 'Sc05g0009240' => 'sci', 'Sc12g0002300' => 'sci', 'Sc21g0000100' => 'sci', 'Sc21g0004720' => 'sci', 'Sed0002949' => 'sed', 'Sed0004114' => 'sed', 'Sed0004306' => 'sed', 'Sed0006172' => 'sed', 'Sed0008413' => 'sed', 'Sed0013809' => 'sed', 'Sed0019556' => 'sed', 'SEGI_03570' => 'sgi', 'SEGI_07859' => 'sgi', 'SEGI_15042' => 'sgi', 'SEGI_16263' => 'sgi', 'SEGI_16552' => 'sgi', 'SEGI_24331' => 'sgi', 'SEGI_27316' => 'sgi', 'SEGI_29521' => 'sgi', 'SEGI_41342' => 'sgi', 'SGA_v2.0_scaffold27G11617' => 'sas', 'SGA_v2.0_scaffold316G48428' => 'sas', 'SGA_v2.0_scaffold49G18261' => 'sas', 'SGA_v2.0_scaffold7G03831' => 'sas', 'SGA_v2.0_scaffold93G28359' => 'sas', 'SHI02210' => 'shi', 'SHI06028' => 'shi', 'SHI06321' => 'shi', 'SMO111G0012' => 'smo', 'SMO228G0080' => 'smo', 'SMO356G0756' => 'smo', 'Solyc02g080620.3' => 'sly', 'Solyc06g074530.1' => 'sly', 'Solyc11g066890.1' => 'sly', 'Solyc11g072520.3' => 'sly', 'Sopen02g025330' => 'spe', 'Sopen06g031000' => 'spe', 'Sopen09g008240' => 'spe', 'Sopen09g025210' => 'spe', 'Sopen11g026600' => 'spe', 'Sopen11g030170' => 'spe', 'Sp1g10420' => 'spa', 'Sp3g06570' => 'spa', 'Sp4g10660' => 'spa', 'Sp5g16460' => 'spa', 'Sp6g22710' => 'spa', 'TAR365G0112' => 'tar', 'TAR369G0717' => 'tar', 'TAR374G0976' => 'tar', 'TAR623G1128' => 'tar', 'TAR626G1937' => 'tar', 'TAR627G0123' => 'tar', 'TAR628G0305' => 'tar', 'TAR636G1176' => 'tar', 'TAR636G2442' => 'tar', 'THA.LOC104800556' => 'tha', 'THA.LOC104809501' => 'tha', 'THA.LOC104815126' => 'tha', 'THA.LOC104815732' => 'tha', 'THA.LOC104823528' => 'tha', 'Thecc.02G365600' => 'tca', 'Thecc.06G222300' => 'tca', 'Thecc.09G261800' => 'tca', 'Thecc.09G291400' => 'tca', 'Thhalv10003028m.g' => 'esa', 'Thhalv10007886m.g' => 'esa', 'Thhalv10016085m.g' => 'esa', 'Thhalv10016681m.g' => 'esa', 'Thhalv10020951m.g' => 'esa', 'TPR.G15598' => 'tpr', 'TPR.G29305' => 'tpr', 'TPR.G32395' => 'tpr', 'TPR.G36998' => 'tpr', 'TPR.G4227' => 'tpr', 'TWI18G1433' => 'twi', 'TWI31G0755' => 'twi', 'TWI38G0912' => 'twi', 'TWI75G1097' => 'twi', 'TWI75G1619' => 'twi', 'TWI79G1336' => 'twi', 'unitig_0.g943' => 'ugi', 'unitig_0.g944' => 'ugi', 'unitig_22.g6646' => 'ugi', 'unitig_37.g12681' => 'ugi', 'unitig_8.g3290' => 'ugi', 'vmacro03278' => 'vma', 'vmacro12197' => 'vma', 'vmacro14478' => 'vma', 'vmacro15787' => 'vma', 'vmacro15789' => 'vma', 'vmacro15790' => 'vma', 'vmacro15806' => 'vma', 'vmacro22907' => 'vma', 'vmacro22908' => 'vma', 'vmacro22909' => 'vma', 'vmacro23108' => 'vma', 'VMungo0540G0540' => 'vmu', 'VMungo0540G2468' => 'vmu', 'VMungo1080G0390' => 'vmu', 'VMungo1080G1165' => 'vmu', 'VMungo1127G0170' => 'vmu', 'VMungo1127G2099' => 'vmu', 'VMungo1215G3013' => 'vmu', 'Zm00001eb013110' => 'zma', 'Zm00001eb084260' => 'zma', 'Zm00001eb096110' => 'zma', 'Zm00001eb217510' => 'zma', 'Zm00001eb322550' => 'zma', 'Zm00001eb390770' => 'zma', 'Zm00001eb397170' => 'zma', 'Zm00001eb404610' => 'zma', 'Zm00001eb421790' => 'zma' ) $gf_id = 'HOM05D000911' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000911' ) $data_identifier = 'HOM05D000911' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 16, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 5, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 6, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 8, 'nnu' => (int) 16, 'oeu' => (int) 8, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 5, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 16, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421790' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000911', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27780' => 'bna', 'A03p35380' => 'bna', 'A04p21160' => 'bna', 'A05p40570' => 'bna', 'A06p26900' => 'bna', 'A08p33230' => 'bna', 'A09p65960' => 'bna', 'A10p18290' => 'bna', 'Aa31LG1G12990' => 'aar', 'Aa31LG1G2980' => 'aar', 'Aa31LG4G14320' => 'aar', 'Aa31LG7G11800' => 'aar', 'Aa31sc36G50' => 'aar', 'Aa31sc36G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3721' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5459' => 'aag', 'Actinidia03028' => 'ach', 'Actinidia03753' => 'ach', 'Actinidia04187' => 'ach', 'Actinidia05509' => 'ach', 'Actinidia24180' => 'ach', 'Actinidia26906' => 'ach', 'Actinidia37097' => 'ach', 'Actinidia38249' => 'ach', 'Ah.01g003470' => 'amhyb', 'Ah.01g004580' => 'amhyb', 'Ah.01g014850' => 'amhyb', 'Ah.01g016830' => 'amhyb', 'Ah.14g088000' => 'amhyb', 'AL1G22980' => 'aly', 'AL3G18990' => 'aly', 'AL4G22440' => 'aly', 'AL4G33180' => 'aly', 'AL5G22920' => 'aly', 'AL6G33660' => 'aly', 'AL8G20720' => 'aly', 'Aqoxy1G00935' => 'aox', 'Aqoxy1G02094' => 'aox', 'Aqoxy2G01239' => 'aox', 'Aqoxy4G01870' => 'aox', 'Aqoxy7G00450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.36ZVTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71EM27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5D6C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH3WRE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3NCM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RIM768' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YB5YRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z36GDV' => 'arhy', 'AT1G08250' => 'ath', 'AT1G11790' => 'ath', 'AT2G27820' => 'ath', 'AT3G07630' => 'ath', 'AT3G44720' => 'ath', 'AT5G22630' => 'ath', 'ATR0693G304' => 'atr', 'ATR0794G109' => 'atr', 'ATR0820G120' => 'atr', 'ATR1159G064' => 'atr', 'Atru.chr10.2239' => 'acertr', 'Atru.chr3.3371' => 'acertr', 'Atru.chr6.3202' => 'acertr', 'AUR62006499' => 'cqu', 'AUR62012718' => 'cqu', 'AUR62021938' => 'cqu', 'AUR62023932' => 'cqu', 'AUR62025034' => 'cqu', 'AUR62025035' => 'cqu', 'AUR62038307' => 'cqu', 'AUR62043466' => 'cqu', 'BcaB02g10748' => 'bca', 'BcaB03g13231' => 'bca', 'BcaB03g14689' => 'bca', 'BcaB05g22716' => 'bca', 'BcaB06g28172' => 'bca', 'BcaB08g36413' => 'bca', 'BcaC01g02186' => 'bca', 'BcaC01g04272' => 'bca', 'BcaC02g08080' => 'bca', 'BcaC02g08227' => 'bca', 'BcaC03g13901' => 'bca', 'BcaC04g19593' => 'bca', 'BcaC04g20874' => 'bca', 'BcaC05g29557' => 'bca', 'BcaC06g35505' => 'bca', 'BcaC07g41954' => 'bca', 'BcaC07g41955' => 'bca', 'BcaC07g41956' => 'bca', 'BcaC07g42519' => 'bca', 'BcaC07g42520' => 'bca', 'BcaC07g42523' => 'bca', 'BcaC07g42524' => 'bca', 'BcaC07g42525' => 'bca', 'BcaC08g47480' => 'bca', 'BcaC08g47481' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00530' => 'bna', 'BolC2t07178H' => 'bol', 'BolC3t16567H' => 'bol', 'BolC4t27234H' => 'bol', 'BolC5t29728H' => 'bol', 'BolC5t34622H' => 'bol', 'BolC6t40321H' => 'bol', 'BolC7t42028H' => 'bol', 'BolC8t49125H' => 'bol', 'BolC8t52538H' => 'bol', 'BolC8t52539H' => 'bol', 'BolC9t56681H' => 'bol', 'BolC9t58266H' => 'bol', 'BolSC21t60294H' => 'bol', 'BraA02t05670Z' => 'bra', 'BraA03t12716Z' => 'bra', 'BraA04t17685Z' => 'bra', 'BraA05t22788Z' => 'bra', 'BraA06t24032Z' => 'bra', 'BraA06t25625Z' => 'bra', 'BraA07t27930Z' => 'bra', 'BraA08t35242Z' => 'bra', 'BraA09t38609Z' => 'bra', 'BraA10t43905Z' => 'bra', 'C02p11060' => 'bna', 'C03p42990' => 'bna', 'C03p67310' => 'bna', 'C04p56990' => 'bna', 'C04p58660' => 'bna', 'C05p09890' => 'bna', 'C05p59680' => 'bna', 'C06p19830' => 'bna', 'C06p53040' => 'bna', 'C07p15230' => 'bna', 'C08p50070' => 'bna', 'C08p50090' => 'bna', 'C09p38330' => 'bna', 'C09p53940' => 'bna', 'CAN.G1014.1' => 'can', 'CAN.G644.30' => 'can', 'CAN.G84.47' => 'can', 'CAN.G919.8' => 'can', 'CANSAT54G0113' => 'cansat', 'CANSAT54G1286' => 'cansat', 'CANSAT64G1020' => 'cansat', 'CARHR008080' => 'chi', 'CARHR008090' => 'chi', 'CARHR012130' => 'chi', 'CARHR038390' => 'chi', 'CARHR082330' => 'chi', 'CARHR120520' => 'chi', 'CARHR151470' => 'chi', 'CARHR190950' => 'chi', 'Carub.0001s0760' => 'cru', 'Carub.0001s1146' => 'cru', 'Carub.0003s0721' => 'cru', 'Carub.0004s0858' => 'cru', 'Carub.0005s1040' => 'cru', 'Carub.0006s2035' => 'cru', 'Carub.0015s0005' => 'cru', 'Ca_01607_v3' => 'car', 'Ca_01677_v3' => 'car', 'Ca_06087_v3' => 'car', 'Ca_19238_v3' => 'car', 'Ca_19373_v3' => 'car', 'Ca_21079_v3' => 'car', 'CBR_g54016' => 'cbr', 'CBR_g54018' => 'cbr', 'CBR_g54020' => 'cbr', 'Cc01_g09780' => 'ccan', 'Cc01_g11680' => 'ccan', 'Cc02_g15610' => 'ccan', 'Cc05_g04350' => 'ccan', 'Cc09_g01580' => 'ccan', 'CDE01G0795' => 'cde', 'CDE02G2024' => 'cde', 'CDE02G2260' => 'cde', 'CDE02G4561' => 'cde', 'CDE05G2733' => 'cde', 'CDE05G3422' => 'cde', 'CDE06G2003' => 'cde', 'CDE08G0576' => 'cde', 'CDE09G0048' => 'cde', 'CDE11G0805' => 'cde', 'Cfa003644' => 'cfa', 'Cfa006290' => 'cfa', 'Cfa010080' => 'cfa', 'Cfa011376' => 'cfa', 'Cfa011576' => 'cfa', 'Cfa011577' => 'cfa', 'Cfa014389' => 'cfa', 'Ciclev10006044m.g' => 'ccl', 'Ciclev10006954m.g' => 'ccl', 'Ciclev10015131m.g' => 'ccl', 'Ciclev10015580m.g' => 'ccl', 'Ciclev10028359m.g' => 'ccl', 'Ciclev10028573m.g' => 'ccl', 'CiPaw.03G159300' => 'cil', 'CiPaw.04G115100' => 'cil', 'CiPaw.09G092800' => 'cil', 'CiPaw.10G071800' => 'cil', 'CiPaw.13G105800' => 'cil', 'CiPaw.13G141000' => 'cil', 'CiPaw.14G103400' => 'cil', 'ClCG01G012700' => 'cla', 'ClCG01G012720' => 'cla', 'ClCG01G021920' => 'cla', 'ClCG02G008870' => 'cla', 'ClCG02G020840' => 'cla', 'ClCG02G021930' => 'cla', 'COL.COLO4_19302' => 'col', 'COL.COLO4_25262' => 'col', 'COL.COLO4_31788' => 'col', 'Cpa.g.c34684' => 'cpa', 'Cpa.g.c36520.1' => 'cpa', 'Cpa.g.c45626' => 'cpa', 'Cpa.g.sc121.17' => 'cpa', 'Cpa.g.sc13.22' => 'cpa', 'Cpa.g.sc87.88' => 'cpa', 'Cre06.g261800' => 'cre', 'CsaV3_1G014500' => 'csa', 'CsaV3_1G014510' => 'csa', 'CsaV3_2G034880' => 'csa', 'CsaV3_6G014760' => 'csa', 'CsaV3_6G021500' => 'csa', 'CsaV3_6G048980' => 'csa', 'CSS0002511' => 'camsi', 'CSS0007556' => 'camsi', 'CSS0008532' => 'camsi', 'CSS0009709' => 'camsi', 'CSS0010486' => 'camsi', 'CSS0016768' => 'camsi', 'CSS0023512' => 'camsi', 'CSS0025341' => 'camsi', 'CSS0027999' => 'camsi', 'CSS0028944' => 'camsi', 'CSS0032292' => 'camsi', 'CSS0032464' => 'camsi', 'CSS0037153' => 'camsi', 'CSS0039256' => 'camsi', 'CSS0048392' => 'camsi', 'CSS0050458' => 'camsi', 'DCAR_004224' => 'dca', 'DCAR_006147' => 'dca', 'DCAR_006465' => 'dca', 'DCAR_008159' => 'dca', 'DCAR_012164' => 'dca', 'DCAR_019764' => 'dca', 'Dinv05418' => 'din', 'Dinv10839' => 'din', 'Dinv12521' => 'din', 'Dinv13900' => 'din', 'Dinv29426' => 'din', 'Duzib150G0263' => 'dzi', 'Duzib168G1178' => 'dzi', 'Duzib168G1924' => 'dzi', 'Duzib170G0299' => 'dzi', 'Duzib170G0813' => 'dzi', 'Duzib235G1128' => 'dzi', 'Duzib248G1060' => 'dzi', 'ECA232G1910' => 'eca', 'ECA233G4621' => 'eca', 'ECA238G1216' => 'eca', 'ECA238G1784' => 'eca', 'ECA248G1242' => 'eca', 'EL10Ac8g20071' => 'bvu', 'EL10Ac9g21086' => 'bvu', 'EL10Ac9g22407' => 'bvu', 'EL10Ac9g22412' => 'bvu', 'Eucgr.A01119' => 'egr', 'Eucgr.E04043' => 'egr', 'Eucgr.J00428' => 'egr', 'Eucgr.J00958' => 'egr', 'FAN11G3091' => 'fan', 'FAN11G3651' => 'fan', 'FAN16G2566' => 'fan', 'FAN21G3155' => 'fan', 'FAN21G3400' => 'fan', 'FAN21G3543' => 'fan', 'FAN25G0234' => 'fan', 'FAN25G1422' => 'fan', 'FAN25G3392' => 'fan', 'FvH4_3g01940' => 'fve', 'FvH4_3g29870' => 'fve', 'FvH4_3g33680' => 'fve', 'Glyma.09G004200' => 'gma', 'Glyma.11G151288' => 'gma', 'Glyma.11G189100' => 'gma', 'Glyma.12G072500' => 'gma', 'Glyma.12G085500' => 'gma', 'Glyma.12G181800' => 'gma', 'Glyma.12G193000' => 'gma', 'Glyma.13G309300' => 'gma', 'Glyma.13G319000' => 'gma', 'Glyma.17G012600' => 'gma', 'Gohir.A06G148600' => 'ghi', 'Gohir.A07G115800' => 'ghi', 'Gohir.A08G003600' => 'ghi', 'Gohir.A09G093300' => 'ghi', 'Gohir.A09G105400' => 'ghi', 'Gohir.A09G105500' => 'ghi', 'Gohir.D06G154600' => 'ghi', 'Gohir.D07G120200' => 'ghi', 'Gohir.D08G013900' => 'ghi', 'Gohir.D09G093100' => 'ghi', 'Gohir.D09G102200' => 'ghi', 'Gohir.D09G102300' => 'ghi', 'Gorai.001G129400' => 'gra', 'Gorai.004G008200' => 'gra', 'Gorai.006G109800' => 'gra', 'Gorai.006G119500' => 'gra', 'Gorai.006G121300' => 'gra', 'Gorai.010G180700' => 'gra', 'GSVIVG01012716001' => 'vvi', 'GSVIVG01025118001' => 'vvi', 'GSVIVG01030439001' => 'vvi', 'GSVIVG01031397001' => 'vvi', 'HanXRQChr01g0004201' => 'han', 'HanXRQChr02g0054941' => 'han', 'HanXRQChr05g0141811' => 'han', 'HanXRQChr07g0197751' => 'han', 'HanXRQChr11g0346691' => 'han', 'HanXRQChr13g0396971' => 'han', 'HanXRQChr14g0432951' => 'han', 'HanXRQChr14g0452001' => 'han', 'HanXRQChr15g0496681' => 'han', 'HanXRQChr17g0557491' => 'han', 'HanXRQChr17g0557501' => 'han', 'Haze_06809' => 'cav', 'Haze_12852' => 'cav', 'Haze_15850' => 'cav', 'Haze_23446' => 'cav', 'Haze_23942' => 'cav', 'Haze_23943' => 'cav', 'Hma1.2p1_0091F.1_g046450' => 'hma', 'Hma1.2p1_0128F.1_g059910' => 'hma', 'Hma1.2p1_0249F.1_g102260' => 'hma', 'Hma1.2p1_0453F.1_g156190' => 'hma', 'Hma1.2p1_0695F.1_g204380' => 'hma', 'Hma1.2p1_0749F.1_g212650' => 'hma', 'Hma1.2p1_2156F.1_g315420' => 'hma', 'Hma1.2p1_2686F.1_g326940' => 'hma', 'HPP92_006428' => 'vpl', 'HPP92_012069' => 'vpl', 'HPP92_014129' => 'vpl', 'HPP92_014133' => 'vpl', 'HPP92_017315' => 'vpl', 'HPP92_026445' => 'vpl', 'HPP92_026446' => 'vpl', 'Hund00774' => 'sun', 'Hund07682' => 'sun', 'Hund21413' => 'sun', 'Hund23462' => 'sun', 'Hund23463' => 'sun', 'Lalb_Chr03g0027911' => 'lal', 'Lalb_Chr13g0304271' => 'lal', 'Lalb_Chr19g0137471' => 'lal', 'Lalb_Chr22g0350651' => 'lal', 'Lalb_Chr24g0395151' => 'lal', 'Lj1A1231T40' => 'lonja', 'Lj1A221T48' => 'lonja', 'Lj1C924T12' => 'lonja', 'Lj2C993G6' => 'lonja', 'Lj3g0005790' => 'lja', 'Lj3g0015432' => 'lja', 'Lj3g0017722' => 'lja', 'Lj3g0018497' => 'lja', 'Lj4g0025071' => 'lja', 'Lsat_1_v5_gn_1_129680' => 'lsa', 'Lsat_1_v5_gn_2_25321' => 'lsa', 'Lsat_1_v5_gn_2_95461' => 'lsa', 'Lsat_1_v5_gn_4_159620' => 'lsa', 'Lsat_1_v5_gn_6_41301' => 'lsa', 'Lsat_1_v5_gn_6_74660' => 'lsa', 'Lsat_1_v5_gn_7_11520' => 'lsa', 'Lsat_1_v5_gn_9_67680' => 'lsa', 'Manes.04G008300' => 'mes', 'Manes.04G008400' => 'mes', 'Manes.04G026500' => 'mes', 'Manes.10G135300' => 'mes', 'Manes.11G157300' => 'mes', 'Manes.12G074000' => 'mes', 'Manes.16G006200' => 'mes', 'Manes.17G026400' => 'mes', 'Mapoly0024s0086' => 'mpo', 'Mapoly0024s0087' => 'mpo', 'Mapoly0071s0057' => 'mpo', 'Mapoly0204s0012' => 'mpo', 'MBI04_g37681_MAGBIO' => 'mbi', 'MBI05_g17779_MAGBIO' => 'mbi', 'MBI12_g31184_MAGBIO' => 'mbi', 'MBI17_g11083_MAGBIO' => 'mbi', 'MBI18_g03883_MAGBIO' => 'mbi', 'MBI18_g28940_MAGBIO' => 'mbi', 'MCO01G690' => 'mco', 'MD03G1109900' => 'mdo', 'MD03G1134800' => 'mdo', 'MD05G1348000' => 'mdo', 'MD10G1322400' => 'mdo', 'MD11G1123300' => 'mdo', 'MD11G1157600' => 'mdo', 'Medtr2g084875' => 'mtr', 'Medtr2g088130' => 'mtr', 'Medtr4g055310' => 'mtr', 'Medtr4g061070' => 'mtr', 'Medtr4g132250' => 'mtr', 'MELO3C004795.2' => 'cme', 'MELO3C004797.2' => 'cme', 'MELO3C007396.2' => 'cme', 'MELO3C019277.2' => 'cme', 'MELO3C021449.2' => 'cme', 'MELO3C025736.2' => 'cme', 'Migut.D02175' => 'egut', 'Migut.H01573' => 'egut', 'Migut.M01327' => 'egut', 'Migut.N02513' => 'egut', 'MSTRG.14638' => 'ama', 'MSTRG.18632' => 'ama', 'MSTRG.7203' => 'ama', 'Nitab4.5_0000533g0140' => 'nta', 'Nitab4.5_0000888g0150' => 'nta', 'Nitab4.5_0001453g0040' => 'nta', 'Nitab4.5_0002827g0090' => 'nta', 'Nitab4.5_0003082g0040' => 'nta', 'Nitab4.5_0007799g0040' => 'nta', 'Nitab4.5_0008983g0010' => 'nta', 'Nitab4.5_0009017g0020' => 'nta', 'Nn1g02132' => 'nnu', 'Nn1g03492' => 'nnu', 'Nn1g03493' => 'nnu', 'Nn1g03494' => 'nnu', 'Nn1g07164' => 'nnu', 'Nn1g07291' => 'nnu', 'Nn2g10655' => 'nnu', 'Nn2g11652' => 'nnu', 'Nn2g14008' => 'nnu', 'Nn3g17476' => 'nnu', 'Nn3g17477' => 'nnu', 'Nn4g22370' => 'nnu', 'Nn4g25255' => 'nnu', 'Nn5g27755' => 'nnu', 'Nn6g34260' => 'nnu', 'Nn6g35041' => 'nnu', 'Oeu005924.1' => 'oeu', 'Oeu008383.1' => 'oeu', 'Oeu014928.1' => 'oeu', 'Oeu019889.1' => 'oeu', 'Oeu022271.1' => 'oeu', 'Oeu025271.1' => 'oeu', 'Oeu036302.1' => 'oeu', 'Oeu044100.1' => 'oeu', 'Os01g0528300' => 'osa', 'Os03g0286200' => 'osa', 'Os04g0406600' => 'osa', 'Os07g0512000' => 'osa', 'Os07g0694600' => 'osa', 'Os08g0411000' => 'osa', 'Os09g0565700' => 'osa', 'Os09g0566050' => 'osa', 'Os10g0523700' => 'osa', 'Peaxi162Scf00002g00514' => 'pax', 'Peaxi162Scf00047g01817' => 'pax', 'Peaxi162Scf00114g00001' => 'pax', 'Peaxi162Scf00147g00613' => 'pax', 'Peaxi162Scf00389g00425' => 'pax', 'PGR042G1139' => 'pgr', 'PGR042G3273' => 'pgr', 'PGR102G2180' => 'pgr', 'PGR119G0234' => 'pgr', 'PGR119G0668' => 'pgr', 'PGSC0003DMG400007122' => 'stu', 'PGSC0003DMG400016478' => 'stu', 'PGSC0003DMG400025374' => 'stu', 'PGSC0003DMG400026536' => 'stu', 'Phvul.003G079600' => 'pvu', 'Phvul.005G115600' => 'pvu', 'Phvul.005G127100' => 'pvu', 'Phvul.006G149500' => 'pvu', 'Phvul.006G149600' => 'pvu', 'Phvul.011G071800' => 'pvu', 'Phvul.011G090400' => 'pvu', 'Potri.004G013400' => 'ptr', 'Potri.004G188100' => 'ptr', 'Potri.008G195500' => 'ptr', 'Potri.009G148800' => 'ptr', 'Potri.011G004700' => 'ptr', 'Pp3c17_22810' => 'ppa', 'Pp3c18_4480' => 'ppa', 'Pp3c19_13030' => 'ppa', 'Pp3c1_33620' => 'ppa', 'Pp3c2_9380' => 'ppa', 'PRCOL_00001023' => 'pco', 'Prupe.3G216300' => 'ppe', 'Prupe.4G019500' => 'ppe', 'Prupe.6G092500' => 'ppe', 'Prupe.6G119200' => 'ppe', 'Psat0s1945g0080' => 'psa', 'Psat0s4167g0040' => 'psa', 'Psat1g185800' => 'psa', 'Psat4g006440' => 'psa', 'Psat4g006480' => 'psa', 'Psat4g168120' => 'psa', 'Psat5g255680' => 'psa', 'Psat5g261760' => 'psa', 'Psat7g222120' => 'psa', 'PSO063G7252' => 'pso', 'PSO170G4778' => 'pso', 'PSO210G2249' => 'pso', 'PSO339G2411' => 'pso', 'PSO339G2457' => 'pso', 'PSO339G2854' => 'pso', 'PSO339G4288' => 'pso', 'PSO339G4615' => 'pso', 'PSO384G2796' => 'pso', 'PSO384G2940' => 'pso', 'PSO384G4227' => 'pso', 'PSO478G1425' => 'pso', 'PSO541G3863' => 'pso', 'PSO675G0507' => 'pso', 'PSO782G0338' => 'pso', 'PSO832G0644' => 'pso', 'QL01p013664' => 'qlo', 'QL01p036598' => 'qlo', 'QL05p072984' => 'qlo', 'QL08p005768' => 'qlo', 'QL08p032743' => 'qlo', 'QL93p0073_0439' => 'qlo', 'QL93p0073_0444' => 'qlo', 'RcHm_v2.0_Chr5g0002851' => 'rch', 'RcHm_v2.0_Chr5g0055201' => 'rch', 'RcHm_v2.0_Chr5g0061191' => 'rch', 'RcHm_v2.0_Chr7g0203231' => 'rch', 'Rhsim01G0208100' => 'rsi', 'Rhsim01G0208200' => 'rsi', 'Rhsim02G0106500' => 'rsi', 'Rhsim03G0107900' => 'rsi', 'Rhsim06G0163400' => 'rsi', 'Rhsim13G0105200' => 'rsi', 'Sabra04G0006300' => 'sbr', 'Sabra04G0127000' => 'sbr', 'Sabra08G0148700' => 'sbr', 'Sabra09G0117400' => 'sbr', 'SalBow1G3326' => 'sbo', 'SalBow3G3228' => 'sbo', 'SalBow6G1634' => 'sbo', 'SalBow6G3603' => 'sbo', 'SalBow6G5266' => 'sbo', 'SalBow7G2265' => 'sbo', 'SalBow8G0850' => 'sbo', 'SalBow8G2592' => 'sbo', 'Sc05g0009240' => 'sci', 'Sc12g0002300' => 'sci', 'Sc21g0000100' => 'sci', 'Sc21g0004720' => 'sci', 'Sed0002949' => 'sed', 'Sed0004114' => 'sed', 'Sed0004306' => 'sed', 'Sed0006172' => 'sed', 'Sed0008413' => 'sed', 'Sed0013809' => 'sed', 'Sed0019556' => 'sed', 'SEGI_03570' => 'sgi', 'SEGI_07859' => 'sgi', 'SEGI_15042' => 'sgi', 'SEGI_16263' => 'sgi', 'SEGI_16552' => 'sgi', 'SEGI_24331' => 'sgi', 'SEGI_27316' => 'sgi', 'SEGI_29521' => 'sgi', 'SEGI_41342' => 'sgi', 'SGA_v2.0_scaffold27G11617' => 'sas', 'SGA_v2.0_scaffold316G48428' => 'sas', 'SGA_v2.0_scaffold49G18261' => 'sas', 'SGA_v2.0_scaffold7G03831' => 'sas', 'SGA_v2.0_scaffold93G28359' => 'sas', 'SHI02210' => 'shi', 'SHI06028' => 'shi', 'SHI06321' => 'shi', 'SMO111G0012' => 'smo', 'SMO228G0080' => 'smo', 'SMO356G0756' => 'smo', 'Solyc02g080620.3' => 'sly', 'Solyc06g074530.1' => 'sly', 'Solyc11g066890.1' => 'sly', 'Solyc11g072520.3' => 'sly', 'Sopen02g025330' => 'spe', 'Sopen06g031000' => 'spe', 'Sopen09g008240' => 'spe', 'Sopen09g025210' => 'spe', 'Sopen11g026600' => 'spe', 'Sopen11g030170' => 'spe', 'Sp1g10420' => 'spa', 'Sp3g06570' => 'spa', 'Sp4g10660' => 'spa', 'Sp5g16460' => 'spa', 'Sp6g22710' => 'spa', 'TAR365G0112' => 'tar', 'TAR369G0717' => 'tar', 'TAR374G0976' => 'tar', 'TAR623G1128' => 'tar', 'TAR626G1937' => 'tar', 'TAR627G0123' => 'tar', 'TAR628G0305' => 'tar', 'TAR636G1176' => 'tar', 'TAR636G2442' => 'tar', 'THA.LOC104800556' => 'tha', 'THA.LOC104809501' => 'tha', 'THA.LOC104815126' => 'tha', 'THA.LOC104815732' => 'tha', 'THA.LOC104823528' => 'tha', 'Thecc.02G365600' => 'tca', 'Thecc.06G222300' => 'tca', 'Thecc.09G261800' => 'tca', 'Thecc.09G291400' => 'tca', 'Thhalv10003028m.g' => 'esa', 'Thhalv10007886m.g' => 'esa', 'Thhalv10016085m.g' => 'esa', 'Thhalv10016681m.g' => 'esa', 'Thhalv10020951m.g' => 'esa', 'TPR.G15598' => 'tpr', 'TPR.G29305' => 'tpr', 'TPR.G32395' => 'tpr', 'TPR.G36998' => 'tpr', 'TPR.G4227' => 'tpr', 'TWI18G1433' => 'twi', 'TWI31G0755' => 'twi', 'TWI38G0912' => 'twi', 'TWI75G1097' => 'twi', 'TWI75G1619' => 'twi', 'TWI79G1336' => 'twi', 'unitig_0.g943' => 'ugi', 'unitig_0.g944' => 'ugi', 'unitig_22.g6646' => 'ugi', 'unitig_37.g12681' => 'ugi', 'unitig_8.g3290' => 'ugi', 'vmacro03278' => 'vma', 'vmacro12197' => 'vma', 'vmacro14478' => 'vma', 'vmacro15787' => 'vma', 'vmacro15789' => 'vma', 'vmacro15790' => 'vma', 'vmacro15806' => 'vma', 'vmacro22907' => 'vma', 'vmacro22908' => 'vma', 'vmacro22909' => 'vma', 'vmacro23108' => 'vma', 'VMungo0540G0540' => 'vmu', 'VMungo0540G2468' => 'vmu', 'VMungo1080G0390' => 'vmu', 'VMungo1080G1165' => 'vmu', 'VMungo1127G0170' => 'vmu', 'VMungo1127G2099' => 'vmu', 'VMungo1215G3013' => 'vmu', 'Zm00001eb013110' => 'zma', 'Zm00001eb084260' => 'zma', 'Zm00001eb096110' => 'zma', 'Zm00001eb217510' => 'zma', 'Zm00001eb322550' => 'zma', 'Zm00001eb390770' => 'zma', 'Zm00001eb397170' => 'zma', 'Zm00001eb404610' => 'zma', 'Zm00001eb421790' => 'zma' ), 'gf_id' => 'HOM05D000911', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000911' ), 'data_identifier' => 'HOM05D000911', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000911', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27780' => 'bna', 'A03p35380' => 'bna', 'A04p21160' => 'bna', 'A05p40570' => 'bna', 'A06p26900' => 'bna', 'A08p33230' => 'bna', 'A09p65960' => 'bna', 'A10p18290' => 'bna', 'Aa31LG1G12990' => 'aar', 'Aa31LG1G2980' => 'aar', 'Aa31LG4G14320' => 'aar', 'Aa31LG7G11800' => 'aar', 'Aa31sc36G50' => 'aar', 'Aa31sc36G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3721' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5459' => 'aag', 'Actinidia03028' => 'ach', 'Actinidia03753' => 'ach', 'Actinidia04187' => 'ach', 'Actinidia05509' => 'ach', 'Actinidia24180' => 'ach', 'Actinidia26906' => 'ach', 'Actinidia37097' => 'ach', 'Actinidia38249' => 'ach', 'Ah.01g003470' => 'amhyb', 'Ah.01g004580' => 'amhyb', 'Ah.01g014850' => 'amhyb', 'Ah.01g016830' => 'amhyb', 'Ah.14g088000' => 'amhyb', 'AL1G22980' => 'aly', 'AL3G18990' => 'aly', 'AL4G22440' => 'aly', 'AL4G33180' => 'aly', 'AL5G22920' => 'aly', 'AL6G33660' => 'aly', 'AL8G20720' => 'aly', 'Aqoxy1G00935' => 'aox', 'Aqoxy1G02094' => 'aox', 'Aqoxy2G01239' => 'aox', 'Aqoxy4G01870' => 'aox', 'Aqoxy7G00450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.36ZVTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71EM27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5D6C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH3WRE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3NCM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RIM768' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YB5YRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z36GDV' => 'arhy', 'AT1G08250' => 'ath', 'AT1G11790' => 'ath', 'AT2G27820' => 'ath', 'AT3G07630' => 'ath', 'AT3G44720' => 'ath', 'AT5G22630' => 'ath', 'ATR0693G304' => 'atr', 'ATR0794G109' => 'atr', 'ATR0820G120' => 'atr', 'ATR1159G064' => 'atr', 'Atru.chr10.2239' => 'acertr', 'Atru.chr3.3371' => 'acertr', 'Atru.chr6.3202' => 'acertr', 'AUR62006499' => 'cqu', 'AUR62012718' => 'cqu', 'AUR62021938' => 'cqu', 'AUR62023932' => 'cqu', 'AUR62025034' => 'cqu', 'AUR62025035' => 'cqu', 'AUR62038307' => 'cqu', 'AUR62043466' => 'cqu', 'BcaB02g10748' => 'bca', 'BcaB03g13231' => 'bca', 'BcaB03g14689' => 'bca', 'BcaB05g22716' => 'bca', 'BcaB06g28172' => 'bca', 'BcaB08g36413' => 'bca', 'BcaC01g02186' => 'bca', 'BcaC01g04272' => 'bca', 'BcaC02g08080' => 'bca', 'BcaC02g08227' => 'bca', 'BcaC03g13901' => 'bca', 'BcaC04g19593' => 'bca', 'BcaC04g20874' => 'bca', 'BcaC05g29557' => 'bca', 'BcaC06g35505' => 'bca', 'BcaC07g41954' => 'bca', 'BcaC07g41955' => 'bca', 'BcaC07g41956' => 'bca', 'BcaC07g42519' => 'bca', 'BcaC07g42520' => 'bca', 'BcaC07g42523' => 'bca', 'BcaC07g42524' => 'bca', 'BcaC07g42525' => 'bca', 'BcaC08g47480' => 'bca', 'BcaC08g47481' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00530' => 'bna', 'BolC2t07178H' => 'bol', 'BolC3t16567H' => 'bol', 'BolC4t27234H' => 'bol', 'BolC5t29728H' => 'bol', 'BolC5t34622H' => 'bol', 'BolC6t40321H' => 'bol', 'BolC7t42028H' => 'bol', 'BolC8t49125H' => 'bol', 'BolC8t52538H' => 'bol', 'BolC8t52539H' => 'bol', 'BolC9t56681H' => 'bol', 'BolC9t58266H' => 'bol', 'BolSC21t60294H' => 'bol', 'BraA02t05670Z' => 'bra', 'BraA03t12716Z' => 'bra', 'BraA04t17685Z' => 'bra', 'BraA05t22788Z' => 'bra', 'BraA06t24032Z' => 'bra', 'BraA06t25625Z' => 'bra', 'BraA07t27930Z' => 'bra', 'BraA08t35242Z' => 'bra', 'BraA09t38609Z' => 'bra', 'BraA10t43905Z' => 'bra', 'C02p11060' => 'bna', 'C03p42990' => 'bna', 'C03p67310' => 'bna', 'C04p56990' => 'bna', 'C04p58660' => 'bna', 'C05p09890' => 'bna', 'C05p59680' => 'bna', 'C06p19830' => 'bna', 'C06p53040' => 'bna', 'C07p15230' => 'bna', 'C08p50070' => 'bna', 'C08p50090' => 'bna', 'C09p38330' => 'bna', 'C09p53940' => 'bna', 'CAN.G1014.1' => 'can', 'CAN.G644.30' => 'can', 'CAN.G84.47' => 'can', 'CAN.G919.8' => 'can', 'CANSAT54G0113' => 'cansat', 'CANSAT54G1286' => 'cansat', 'CANSAT64G1020' => 'cansat', 'CARHR008080' => 'chi', 'CARHR008090' => 'chi', 'CARHR012130' => 'chi', 'CARHR038390' => 'chi', 'CARHR082330' => 'chi', 'CARHR120520' => 'chi', 'CARHR151470' => 'chi', 'CARHR190950' => 'chi', 'Carub.0001s0760' => 'cru', 'Carub.0001s1146' => 'cru', 'Carub.0003s0721' => 'cru', 'Carub.0004s0858' => 'cru', 'Carub.0005s1040' => 'cru', 'Carub.0006s2035' => 'cru', 'Carub.0015s0005' => 'cru', 'Ca_01607_v3' => 'car', 'Ca_01677_v3' => 'car', 'Ca_06087_v3' => 'car', 'Ca_19238_v3' => 'car', 'Ca_19373_v3' => 'car', 'Ca_21079_v3' => 'car', 'CBR_g54016' => 'cbr', 'CBR_g54018' => 'cbr', 'CBR_g54020' => 'cbr', 'Cc01_g09780' => 'ccan', 'Cc01_g11680' => 'ccan', 'Cc02_g15610' => 'ccan', 'Cc05_g04350' => 'ccan', 'Cc09_g01580' => 'ccan', 'CDE01G0795' => 'cde', 'CDE02G2024' => 'cde', 'CDE02G2260' => 'cde', 'CDE02G4561' => 'cde', 'CDE05G2733' => 'cde', 'CDE05G3422' => 'cde', 'CDE06G2003' => 'cde', 'CDE08G0576' => 'cde', 'CDE09G0048' => 'cde', 'CDE11G0805' => 'cde', 'Cfa003644' => 'cfa', 'Cfa006290' => 'cfa', 'Cfa010080' => 'cfa', 'Cfa011376' => 'cfa', 'Cfa011576' => 'cfa', 'Cfa011577' => 'cfa', 'Cfa014389' => 'cfa', 'Ciclev10006044m.g' => 'ccl', 'Ciclev10006954m.g' => 'ccl', 'Ciclev10015131m.g' => 'ccl', 'Ciclev10015580m.g' => 'ccl', 'Ciclev10028359m.g' => 'ccl', 'Ciclev10028573m.g' => 'ccl', 'CiPaw.03G159300' => 'cil', 'CiPaw.04G115100' => 'cil', 'CiPaw.09G092800' => 'cil', 'CiPaw.10G071800' => 'cil', 'CiPaw.13G105800' => 'cil', 'CiPaw.13G141000' => 'cil', 'CiPaw.14G103400' => 'cil', 'ClCG01G012700' => 'cla', 'ClCG01G012720' => 'cla', 'ClCG01G021920' => 'cla', 'ClCG02G008870' => 'cla', 'ClCG02G020840' => 'cla', 'ClCG02G021930' => 'cla', 'COL.COLO4_19302' => 'col', 'COL.COLO4_25262' => 'col', 'COL.COLO4_31788' => 'col', 'Cpa.g.c34684' => 'cpa', 'Cpa.g.c36520.1' => 'cpa', 'Cpa.g.c45626' => 'cpa', 'Cpa.g.sc121.17' => 'cpa', 'Cpa.g.sc13.22' => 'cpa', 'Cpa.g.sc87.88' => 'cpa', 'Cre06.g261800' => 'cre', 'CsaV3_1G014500' => 'csa', 'CsaV3_1G014510' => 'csa', 'CsaV3_2G034880' => 'csa', 'CsaV3_6G014760' => 'csa', 'CsaV3_6G021500' => 'csa', 'CsaV3_6G048980' => 'csa', 'CSS0002511' => 'camsi', 'CSS0007556' => 'camsi', 'CSS0008532' => 'camsi', 'CSS0009709' => 'camsi', 'CSS0010486' => 'camsi', 'CSS0016768' => 'camsi', 'CSS0023512' => 'camsi', 'CSS0025341' => 'camsi', 'CSS0027999' => 'camsi', 'CSS0028944' => 'camsi', 'CSS0032292' => 'camsi', 'CSS0032464' => 'camsi', 'CSS0037153' => 'camsi', 'CSS0039256' => 'camsi', 'CSS0048392' => 'camsi', 'CSS0050458' => 'camsi', 'DCAR_004224' => 'dca', 'DCAR_006147' => 'dca', 'DCAR_006465' => 'dca', 'DCAR_008159' => 'dca', 'DCAR_012164' => 'dca', 'DCAR_019764' => 'dca', 'Dinv05418' => 'din', 'Dinv10839' => 'din', 'Dinv12521' => 'din', 'Dinv13900' => 'din', 'Dinv29426' => 'din', 'Duzib150G0263' => 'dzi', 'Duzib168G1178' => 'dzi', 'Duzib168G1924' => 'dzi', 'Duzib170G0299' => 'dzi', 'Duzib170G0813' => 'dzi', 'Duzib235G1128' => 'dzi', 'Duzib248G1060' => 'dzi', 'ECA232G1910' => 'eca', 'ECA233G4621' => 'eca', 'ECA238G1216' => 'eca', 'ECA238G1784' => 'eca', 'ECA248G1242' => 'eca', 'EL10Ac8g20071' => 'bvu', 'EL10Ac9g21086' => 'bvu', 'EL10Ac9g22407' => 'bvu', 'EL10Ac9g22412' => 'bvu', 'Eucgr.A01119' => 'egr', 'Eucgr.E04043' => 'egr', 'Eucgr.J00428' => 'egr', 'Eucgr.J00958' => 'egr', 'FAN11G3091' => 'fan', 'FAN11G3651' => 'fan', 'FAN16G2566' => 'fan', 'FAN21G3155' => 'fan', 'FAN21G3400' => 'fan', 'FAN21G3543' => 'fan', 'FAN25G0234' => 'fan', 'FAN25G1422' => 'fan', 'FAN25G3392' => 'fan', 'FvH4_3g01940' => 'fve', 'FvH4_3g29870' => 'fve', 'FvH4_3g33680' => 'fve', 'Glyma.09G004200' => 'gma', 'Glyma.11G151288' => 'gma', 'Glyma.11G189100' => 'gma', 'Glyma.12G072500' => 'gma', 'Glyma.12G085500' => 'gma', 'Glyma.12G181800' => 'gma', 'Glyma.12G193000' => 'gma', 'Glyma.13G309300' => 'gma', 'Glyma.13G319000' => 'gma', 'Glyma.17G012600' => 'gma', 'Gohir.A06G148600' => 'ghi', 'Gohir.A07G115800' => 'ghi', 'Gohir.A08G003600' => 'ghi', 'Gohir.A09G093300' => 'ghi', 'Gohir.A09G105400' => 'ghi', 'Gohir.A09G105500' => 'ghi', 'Gohir.D06G154600' => 'ghi', 'Gohir.D07G120200' => 'ghi', 'Gohir.D08G013900' => 'ghi', 'Gohir.D09G093100' => 'ghi', 'Gohir.D09G102200' => 'ghi', 'Gohir.D09G102300' => 'ghi', 'Gorai.001G129400' => 'gra', 'Gorai.004G008200' => 'gra', 'Gorai.006G109800' => 'gra', 'Gorai.006G119500' => 'gra', 'Gorai.006G121300' => 'gra', 'Gorai.010G180700' => 'gra', 'GSVIVG01012716001' => 'vvi', 'GSVIVG01025118001' => 'vvi', 'GSVIVG01030439001' => 'vvi', 'GSVIVG01031397001' => 'vvi', 'HanXRQChr01g0004201' => 'han', 'HanXRQChr02g0054941' => 'han', 'HanXRQChr05g0141811' => 'han', 'HanXRQChr07g0197751' => 'han', 'HanXRQChr11g0346691' => 'han', 'HanXRQChr13g0396971' => 'han', 'HanXRQChr14g0432951' => 'han', 'HanXRQChr14g0452001' => 'han', 'HanXRQChr15g0496681' => 'han', 'HanXRQChr17g0557491' => 'han', 'HanXRQChr17g0557501' => 'han', 'Haze_06809' => 'cav', 'Haze_12852' => 'cav', 'Haze_15850' => 'cav', 'Haze_23446' => 'cav', 'Haze_23942' => 'cav', 'Haze_23943' => 'cav', 'Hma1.2p1_0091F.1_g046450' => 'hma', 'Hma1.2p1_0128F.1_g059910' => 'hma', 'Hma1.2p1_0249F.1_g102260' => 'hma', 'Hma1.2p1_0453F.1_g156190' => 'hma', 'Hma1.2p1_0695F.1_g204380' => 'hma', 'Hma1.2p1_0749F.1_g212650' => 'hma', 'Hma1.2p1_2156F.1_g315420' => 'hma', 'Hma1.2p1_2686F.1_g326940' => 'hma', 'HPP92_006428' => 'vpl', 'HPP92_012069' => 'vpl', 'HPP92_014129' => 'vpl', 'HPP92_014133' => 'vpl', 'HPP92_017315' => 'vpl', 'HPP92_026445' => 'vpl', 'HPP92_026446' => 'vpl', 'Hund00774' => 'sun', 'Hund07682' => 'sun', 'Hund21413' => 'sun', 'Hund23462' => 'sun', 'Hund23463' => 'sun', 'Lalb_Chr03g0027911' => 'lal', 'Lalb_Chr13g0304271' => 'lal', 'Lalb_Chr19g0137471' => 'lal', 'Lalb_Chr22g0350651' => 'lal', 'Lalb_Chr24g0395151' => 'lal', 'Lj1A1231T40' => 'lonja', 'Lj1A221T48' => 'lonja', 'Lj1C924T12' => 'lonja', 'Lj2C993G6' => 'lonja', 'Lj3g0005790' => 'lja', 'Lj3g0015432' => 'lja', 'Lj3g0017722' => 'lja', 'Lj3g0018497' => 'lja', 'Lj4g0025071' => 'lja', 'Lsat_1_v5_gn_1_129680' => 'lsa', 'Lsat_1_v5_gn_2_25321' => 'lsa', 'Lsat_1_v5_gn_2_95461' => 'lsa', 'Lsat_1_v5_gn_4_159620' => 'lsa', 'Lsat_1_v5_gn_6_41301' => 'lsa', 'Lsat_1_v5_gn_6_74660' => 'lsa', 'Lsat_1_v5_gn_7_11520' => 'lsa', 'Lsat_1_v5_gn_9_67680' => 'lsa', 'Manes.04G008300' => 'mes', 'Manes.04G008400' => 'mes', 'Manes.04G026500' => 'mes', 'Manes.10G135300' => 'mes', 'Manes.11G157300' => 'mes', 'Manes.12G074000' => 'mes', 'Manes.16G006200' => 'mes', 'Manes.17G026400' => 'mes', 'Mapoly0024s0086' => 'mpo', 'Mapoly0024s0087' => 'mpo', 'Mapoly0071s0057' => 'mpo', 'Mapoly0204s0012' => 'mpo', 'MBI04_g37681_MAGBIO' => 'mbi', 'MBI05_g17779_MAGBIO' => 'mbi', 'MBI12_g31184_MAGBIO' => 'mbi', 'MBI17_g11083_MAGBIO' => 'mbi', 'MBI18_g03883_MAGBIO' => 'mbi', 'MBI18_g28940_MAGBIO' => 'mbi', 'MCO01G690' => 'mco', 'MD03G1109900' => 'mdo', 'MD03G1134800' => 'mdo', 'MD05G1348000' => 'mdo', 'MD10G1322400' => 'mdo', 'MD11G1123300' => 'mdo', 'MD11G1157600' => 'mdo', 'Medtr2g084875' => 'mtr', 'Medtr2g088130' => 'mtr', 'Medtr4g055310' => 'mtr', 'Medtr4g061070' => 'mtr', 'Medtr4g132250' => 'mtr', 'MELO3C004795.2' => 'cme', 'MELO3C004797.2' => 'cme', 'MELO3C007396.2' => 'cme', 'MELO3C019277.2' => 'cme', 'MELO3C021449.2' => 'cme', 'MELO3C025736.2' => 'cme', 'Migut.D02175' => 'egut', 'Migut.H01573' => 'egut', 'Migut.M01327' => 'egut', 'Migut.N02513' => 'egut', 'MSTRG.14638' => 'ama', 'MSTRG.18632' => 'ama', 'MSTRG.7203' => 'ama', 'Nitab4.5_0000533g0140' => 'nta', 'Nitab4.5_0000888g0150' => 'nta', 'Nitab4.5_0001453g0040' => 'nta', 'Nitab4.5_0002827g0090' => 'nta', 'Nitab4.5_0003082g0040' => 'nta', 'Nitab4.5_0007799g0040' => 'nta', 'Nitab4.5_0008983g0010' => 'nta', 'Nitab4.5_0009017g0020' => 'nta', 'Nn1g02132' => 'nnu', 'Nn1g03492' => 'nnu', 'Nn1g03493' => 'nnu', 'Nn1g03494' => 'nnu', 'Nn1g07164' => 'nnu', 'Nn1g07291' => 'nnu', 'Nn2g10655' => 'nnu', 'Nn2g11652' => 'nnu', 'Nn2g14008' => 'nnu', 'Nn3g17476' => 'nnu', 'Nn3g17477' => 'nnu', 'Nn4g22370' => 'nnu', 'Nn4g25255' => 'nnu', 'Nn5g27755' => 'nnu', 'Nn6g34260' => 'nnu', 'Nn6g35041' => 'nnu', 'Oeu005924.1' => 'oeu', 'Oeu008383.1' => 'oeu', 'Oeu014928.1' => 'oeu', 'Oeu019889.1' => 'oeu', 'Oeu022271.1' => 'oeu', 'Oeu025271.1' => 'oeu', 'Oeu036302.1' => 'oeu', 'Oeu044100.1' => 'oeu', 'Os01g0528300' => 'osa', 'Os03g0286200' => 'osa', 'Os04g0406600' => 'osa', 'Os07g0512000' => 'osa', 'Os07g0694600' => 'osa', 'Os08g0411000' => 'osa', 'Os09g0565700' => 'osa', 'Os09g0566050' => 'osa', 'Os10g0523700' => 'osa', 'Peaxi162Scf00002g00514' => 'pax', 'Peaxi162Scf00047g01817' => 'pax', 'Peaxi162Scf00114g00001' => 'pax', 'Peaxi162Scf00147g00613' => 'pax', 'Peaxi162Scf00389g00425' => 'pax', 'PGR042G1139' => 'pgr', 'PGR042G3273' => 'pgr', 'PGR102G2180' => 'pgr', 'PGR119G0234' => 'pgr', 'PGR119G0668' => 'pgr', 'PGSC0003DMG400007122' => 'stu', 'PGSC0003DMG400016478' => 'stu', 'PGSC0003DMG400025374' => 'stu', 'PGSC0003DMG400026536' => 'stu', 'Phvul.003G079600' => 'pvu', 'Phvul.005G115600' => 'pvu', 'Phvul.005G127100' => 'pvu', 'Phvul.006G149500' => 'pvu', 'Phvul.006G149600' => 'pvu', 'Phvul.011G071800' => 'pvu', 'Phvul.011G090400' => 'pvu', 'Potri.004G013400' => 'ptr', 'Potri.004G188100' => 'ptr', 'Potri.008G195500' => 'ptr', 'Potri.009G148800' => 'ptr', 'Potri.011G004700' => 'ptr', 'Pp3c17_22810' => 'ppa', 'Pp3c18_4480' => 'ppa', 'Pp3c19_13030' => 'ppa', 'Pp3c1_33620' => 'ppa', 'Pp3c2_9380' => 'ppa', 'PRCOL_00001023' => 'pco', 'Prupe.3G216300' => 'ppe', 'Prupe.4G019500' => 'ppe', 'Prupe.6G092500' => 'ppe', 'Prupe.6G119200' => 'ppe', 'Psat0s1945g0080' => 'psa', 'Psat0s4167g0040' => 'psa', 'Psat1g185800' => 'psa', 'Psat4g006440' => 'psa', 'Psat4g006480' => 'psa', 'Psat4g168120' => 'psa', 'Psat5g255680' => 'psa', 'Psat5g261760' => 'psa', 'Psat7g222120' => 'psa', 'PSO063G7252' => 'pso', 'PSO170G4778' => 'pso', 'PSO210G2249' => 'pso', 'PSO339G2411' => 'pso', 'PSO339G2457' => 'pso', 'PSO339G2854' => 'pso', 'PSO339G4288' => 'pso', 'PSO339G4615' => 'pso', 'PSO384G2796' => 'pso', 'PSO384G2940' => 'pso', 'PSO384G4227' => 'pso', 'PSO478G1425' => 'pso', 'PSO541G3863' => 'pso', 'PSO675G0507' => 'pso', 'PSO782G0338' => 'pso', 'PSO832G0644' => 'pso', 'QL01p013664' => 'qlo', 'QL01p036598' => 'qlo', 'QL05p072984' => 'qlo', 'QL08p005768' => 'qlo', 'QL08p032743' => 'qlo', 'QL93p0073_0439' => 'qlo', 'QL93p0073_0444' => 'qlo', 'RcHm_v2.0_Chr5g0002851' => 'rch', 'RcHm_v2.0_Chr5g0055201' => 'rch', 'RcHm_v2.0_Chr5g0061191' => 'rch', 'RcHm_v2.0_Chr7g0203231' => 'rch', 'Rhsim01G0208100' => 'rsi', 'Rhsim01G0208200' => 'rsi', 'Rhsim02G0106500' => 'rsi', 'Rhsim03G0107900' => 'rsi', 'Rhsim06G0163400' => 'rsi', 'Rhsim13G0105200' => 'rsi', 'Sabra04G0006300' => 'sbr', 'Sabra04G0127000' => 'sbr', 'Sabra08G0148700' => 'sbr', 'Sabra09G0117400' => 'sbr', 'SalBow1G3326' => 'sbo', 'SalBow3G3228' => 'sbo', 'SalBow6G1634' => 'sbo', 'SalBow6G3603' => 'sbo', 'SalBow6G5266' => 'sbo', 'SalBow7G2265' => 'sbo', 'SalBow8G0850' => 'sbo', 'SalBow8G2592' => 'sbo', 'Sc05g0009240' => 'sci', 'Sc12g0002300' => 'sci', 'Sc21g0000100' => 'sci', 'Sc21g0004720' => 'sci', 'Sed0002949' => 'sed', 'Sed0004114' => 'sed', 'Sed0004306' => 'sed', 'Sed0006172' => 'sed', 'Sed0008413' => 'sed', 'Sed0013809' => 'sed', 'Sed0019556' => 'sed', 'SEGI_03570' => 'sgi', 'SEGI_07859' => 'sgi', 'SEGI_15042' => 'sgi', 'SEGI_16263' => 'sgi', 'SEGI_16552' => 'sgi', 'SEGI_24331' => 'sgi', 'SEGI_27316' => 'sgi', 'SEGI_29521' => 'sgi', 'SEGI_41342' => 'sgi', 'SGA_v2.0_scaffold27G11617' => 'sas', 'SGA_v2.0_scaffold316G48428' => 'sas', 'SGA_v2.0_scaffold49G18261' => 'sas', 'SGA_v2.0_scaffold7G03831' => 'sas', 'SGA_v2.0_scaffold93G28359' => 'sas', 'SHI02210' => 'shi', 'SHI06028' => 'shi', 'SHI06321' => 'shi', 'SMO111G0012' => 'smo', 'SMO228G0080' => 'smo', 'SMO356G0756' => 'smo', 'Solyc02g080620.3' => 'sly', 'Solyc06g074530.1' => 'sly', 'Solyc11g066890.1' => 'sly', 'Solyc11g072520.3' => 'sly', 'Sopen02g025330' => 'spe', 'Sopen06g031000' => 'spe', 'Sopen09g008240' => 'spe', 'Sopen09g025210' => 'spe', 'Sopen11g026600' => 'spe', 'Sopen11g030170' => 'spe', 'Sp1g10420' => 'spa', 'Sp3g06570' => 'spa', 'Sp4g10660' => 'spa', 'Sp5g16460' => 'spa', 'Sp6g22710' => 'spa', 'TAR365G0112' => 'tar', 'TAR369G0717' => 'tar', 'TAR374G0976' => 'tar', 'TAR623G1128' => 'tar', 'TAR626G1937' => 'tar', 'TAR627G0123' => 'tar', 'TAR628G0305' => 'tar', 'TAR636G1176' => 'tar', 'TAR636G2442' => 'tar', 'THA.LOC104800556' => 'tha', 'THA.LOC104809501' => 'tha', 'THA.LOC104815126' => 'tha', 'THA.LOC104815732' => 'tha', 'THA.LOC104823528' => 'tha', 'Thecc.02G365600' => 'tca', 'Thecc.06G222300' => 'tca', 'Thecc.09G261800' => 'tca', 'Thecc.09G291400' => 'tca', 'Thhalv10003028m.g' => 'esa', 'Thhalv10007886m.g' => 'esa', 'Thhalv10016085m.g' => 'esa', 'Thhalv10016681m.g' => 'esa', 'Thhalv10020951m.g' => 'esa', 'TPR.G15598' => 'tpr', 'TPR.G29305' => 'tpr', 'TPR.G32395' => 'tpr', 'TPR.G36998' => 'tpr', 'TPR.G4227' => 'tpr', 'TWI18G1433' => 'twi', 'TWI31G0755' => 'twi', 'TWI38G0912' => 'twi', 'TWI75G1097' => 'twi', 'TWI75G1619' => 'twi', 'TWI79G1336' => 'twi', 'unitig_0.g943' => 'ugi', 'unitig_0.g944' => 'ugi', 'unitig_22.g6646' => 'ugi', 'unitig_37.g12681' => 'ugi', 'unitig_8.g3290' => 'ugi', 'vmacro03278' => 'vma', 'vmacro12197' => 'vma', 'vmacro14478' => 'vma', 'vmacro15787' => 'vma', 'vmacro15789' => 'vma', 'vmacro15790' => 'vma', 'vmacro15806' => 'vma', 'vmacro22907' => 'vma', 'vmacro22908' => 'vma', 'vmacro22909' => 'vma', 'vmacro23108' => 'vma', 'VMungo0540G0540' => 'vmu', 'VMungo0540G2468' => 'vmu', 'VMungo1080G0390' => 'vmu', 'VMungo1080G1165' => 'vmu', 'VMungo1127G0170' => 'vmu', 'VMungo1127G2099' => 'vmu', 'VMungo1215G3013' => 'vmu', 'Zm00001eb013110' => 'zma', 'Zm00001eb084260' => 'zma', 'Zm00001eb096110' => 'zma', 'Zm00001eb217510' => 'zma', 'Zm00001eb322550' => 'zma', 'Zm00001eb390770' => 'zma', 'Zm00001eb397170' => 'zma', 'Zm00001eb404610' => 'zma', 'Zm00001eb421790' => 'zma' ) $gf_id = 'HOM05D000911' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000911' ) $data_identifier = 'HOM05D000911' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 16, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 5, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 6, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 8, 'nnu' => (int) 16, 'oeu' => (int) 8, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 5, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 16, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421790' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000911', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27780' => 'bna', 'A03p35380' => 'bna', 'A04p21160' => 'bna', 'A05p40570' => 'bna', 'A06p26900' => 'bna', 'A08p33230' => 'bna', 'A09p65960' => 'bna', 'A10p18290' => 'bna', 'Aa31LG1G12990' => 'aar', 'Aa31LG1G2980' => 'aar', 'Aa31LG4G14320' => 'aar', 'Aa31LG7G11800' => 'aar', 'Aa31sc36G50' => 'aar', 'Aa31sc36G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3721' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5459' => 'aag', 'Actinidia03028' => 'ach', 'Actinidia03753' => 'ach', 'Actinidia04187' => 'ach', 'Actinidia05509' => 'ach', 'Actinidia24180' => 'ach', 'Actinidia26906' => 'ach', 'Actinidia37097' => 'ach', 'Actinidia38249' => 'ach', 'Ah.01g003470' => 'amhyb', 'Ah.01g004580' => 'amhyb', 'Ah.01g014850' => 'amhyb', 'Ah.01g016830' => 'amhyb', 'Ah.14g088000' => 'amhyb', 'AL1G22980' => 'aly', 'AL3G18990' => 'aly', 'AL4G22440' => 'aly', 'AL4G33180' => 'aly', 'AL5G22920' => 'aly', 'AL6G33660' => 'aly', 'AL8G20720' => 'aly', 'Aqoxy1G00935' => 'aox', 'Aqoxy1G02094' => 'aox', 'Aqoxy2G01239' => 'aox', 'Aqoxy4G01870' => 'aox', 'Aqoxy7G00450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.36ZVTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71EM27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5D6C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH3WRE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3NCM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RIM768' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YB5YRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z36GDV' => 'arhy', 'AT1G08250' => 'ath', 'AT1G11790' => 'ath', 'AT2G27820' => 'ath', 'AT3G07630' => 'ath', 'AT3G44720' => 'ath', 'AT5G22630' => 'ath', 'ATR0693G304' => 'atr', 'ATR0794G109' => 'atr', 'ATR0820G120' => 'atr', 'ATR1159G064' => 'atr', 'Atru.chr10.2239' => 'acertr', 'Atru.chr3.3371' => 'acertr', 'Atru.chr6.3202' => 'acertr', 'AUR62006499' => 'cqu', 'AUR62012718' => 'cqu', 'AUR62021938' => 'cqu', 'AUR62023932' => 'cqu', 'AUR62025034' => 'cqu', 'AUR62025035' => 'cqu', 'AUR62038307' => 'cqu', 'AUR62043466' => 'cqu', 'BcaB02g10748' => 'bca', 'BcaB03g13231' => 'bca', 'BcaB03g14689' => 'bca', 'BcaB05g22716' => 'bca', 'BcaB06g28172' => 'bca', 'BcaB08g36413' => 'bca', 'BcaC01g02186' => 'bca', 'BcaC01g04272' => 'bca', 'BcaC02g08080' => 'bca', 'BcaC02g08227' => 'bca', 'BcaC03g13901' => 'bca', 'BcaC04g19593' => 'bca', 'BcaC04g20874' => 'bca', 'BcaC05g29557' => 'bca', 'BcaC06g35505' => 'bca', 'BcaC07g41954' => 'bca', 'BcaC07g41955' => 'bca', 'BcaC07g41956' => 'bca', 'BcaC07g42519' => 'bca', 'BcaC07g42520' => 'bca', 'BcaC07g42523' => 'bca', 'BcaC07g42524' => 'bca', 'BcaC07g42525' => 'bca', 'BcaC08g47480' => 'bca', 'BcaC08g47481' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00530' => 'bna', 'BolC2t07178H' => 'bol', 'BolC3t16567H' => 'bol', 'BolC4t27234H' => 'bol', 'BolC5t29728H' => 'bol', 'BolC5t34622H' => 'bol', 'BolC6t40321H' => 'bol', 'BolC7t42028H' => 'bol', 'BolC8t49125H' => 'bol', 'BolC8t52538H' => 'bol', 'BolC8t52539H' => 'bol', 'BolC9t56681H' => 'bol', 'BolC9t58266H' => 'bol', 'BolSC21t60294H' => 'bol', 'BraA02t05670Z' => 'bra', 'BraA03t12716Z' => 'bra', 'BraA04t17685Z' => 'bra', 'BraA05t22788Z' => 'bra', 'BraA06t24032Z' => 'bra', 'BraA06t25625Z' => 'bra', 'BraA07t27930Z' => 'bra', 'BraA08t35242Z' => 'bra', 'BraA09t38609Z' => 'bra', 'BraA10t43905Z' => 'bra', 'C02p11060' => 'bna', 'C03p42990' => 'bna', 'C03p67310' => 'bna', 'C04p56990' => 'bna', 'C04p58660' => 'bna', 'C05p09890' => 'bna', 'C05p59680' => 'bna', 'C06p19830' => 'bna', 'C06p53040' => 'bna', 'C07p15230' => 'bna', 'C08p50070' => 'bna', 'C08p50090' => 'bna', 'C09p38330' => 'bna', 'C09p53940' => 'bna', 'CAN.G1014.1' => 'can', 'CAN.G644.30' => 'can', 'CAN.G84.47' => 'can', 'CAN.G919.8' => 'can', 'CANSAT54G0113' => 'cansat', 'CANSAT54G1286' => 'cansat', 'CANSAT64G1020' => 'cansat', 'CARHR008080' => 'chi', 'CARHR008090' => 'chi', 'CARHR012130' => 'chi', 'CARHR038390' => 'chi', 'CARHR082330' => 'chi', 'CARHR120520' => 'chi', 'CARHR151470' => 'chi', 'CARHR190950' => 'chi', 'Carub.0001s0760' => 'cru', 'Carub.0001s1146' => 'cru', 'Carub.0003s0721' => 'cru', 'Carub.0004s0858' => 'cru', 'Carub.0005s1040' => 'cru', 'Carub.0006s2035' => 'cru', 'Carub.0015s0005' => 'cru', 'Ca_01607_v3' => 'car', 'Ca_01677_v3' => 'car', 'Ca_06087_v3' => 'car', 'Ca_19238_v3' => 'car', 'Ca_19373_v3' => 'car', 'Ca_21079_v3' => 'car', 'CBR_g54016' => 'cbr', 'CBR_g54018' => 'cbr', 'CBR_g54020' => 'cbr', 'Cc01_g09780' => 'ccan', 'Cc01_g11680' => 'ccan', 'Cc02_g15610' => 'ccan', 'Cc05_g04350' => 'ccan', 'Cc09_g01580' => 'ccan', 'CDE01G0795' => 'cde', 'CDE02G2024' => 'cde', 'CDE02G2260' => 'cde', 'CDE02G4561' => 'cde', 'CDE05G2733' => 'cde', 'CDE05G3422' => 'cde', 'CDE06G2003' => 'cde', 'CDE08G0576' => 'cde', 'CDE09G0048' => 'cde', 'CDE11G0805' => 'cde', 'Cfa003644' => 'cfa', 'Cfa006290' => 'cfa', 'Cfa010080' => 'cfa', 'Cfa011376' => 'cfa', 'Cfa011576' => 'cfa', 'Cfa011577' => 'cfa', 'Cfa014389' => 'cfa', 'Ciclev10006044m.g' => 'ccl', 'Ciclev10006954m.g' => 'ccl', 'Ciclev10015131m.g' => 'ccl', 'Ciclev10015580m.g' => 'ccl', 'Ciclev10028359m.g' => 'ccl', 'Ciclev10028573m.g' => 'ccl', 'CiPaw.03G159300' => 'cil', 'CiPaw.04G115100' => 'cil', 'CiPaw.09G092800' => 'cil', 'CiPaw.10G071800' => 'cil', 'CiPaw.13G105800' => 'cil', 'CiPaw.13G141000' => 'cil', 'CiPaw.14G103400' => 'cil', 'ClCG01G012700' => 'cla', 'ClCG01G012720' => 'cla', 'ClCG01G021920' => 'cla', 'ClCG02G008870' => 'cla', 'ClCG02G020840' => 'cla', 'ClCG02G021930' => 'cla', 'COL.COLO4_19302' => 'col', 'COL.COLO4_25262' => 'col', 'COL.COLO4_31788' => 'col', 'Cpa.g.c34684' => 'cpa', 'Cpa.g.c36520.1' => 'cpa', 'Cpa.g.c45626' => 'cpa', 'Cpa.g.sc121.17' => 'cpa', 'Cpa.g.sc13.22' => 'cpa', 'Cpa.g.sc87.88' => 'cpa', 'Cre06.g261800' => 'cre', 'CsaV3_1G014500' => 'csa', 'CsaV3_1G014510' => 'csa', 'CsaV3_2G034880' => 'csa', 'CsaV3_6G014760' => 'csa', 'CsaV3_6G021500' => 'csa', 'CsaV3_6G048980' => 'csa', 'CSS0002511' => 'camsi', 'CSS0007556' => 'camsi', 'CSS0008532' => 'camsi', 'CSS0009709' => 'camsi', 'CSS0010486' => 'camsi', 'CSS0016768' => 'camsi', 'CSS0023512' => 'camsi', 'CSS0025341' => 'camsi', 'CSS0027999' => 'camsi', 'CSS0028944' => 'camsi', 'CSS0032292' => 'camsi', 'CSS0032464' => 'camsi', 'CSS0037153' => 'camsi', 'CSS0039256' => 'camsi', 'CSS0048392' => 'camsi', 'CSS0050458' => 'camsi', 'DCAR_004224' => 'dca', 'DCAR_006147' => 'dca', 'DCAR_006465' => 'dca', 'DCAR_008159' => 'dca', 'DCAR_012164' => 'dca', 'DCAR_019764' => 'dca', 'Dinv05418' => 'din', 'Dinv10839' => 'din', 'Dinv12521' => 'din', 'Dinv13900' => 'din', 'Dinv29426' => 'din', 'Duzib150G0263' => 'dzi', 'Duzib168G1178' => 'dzi', 'Duzib168G1924' => 'dzi', 'Duzib170G0299' => 'dzi', 'Duzib170G0813' => 'dzi', 'Duzib235G1128' => 'dzi', 'Duzib248G1060' => 'dzi', 'ECA232G1910' => 'eca', 'ECA233G4621' => 'eca', 'ECA238G1216' => 'eca', 'ECA238G1784' => 'eca', 'ECA248G1242' => 'eca', 'EL10Ac8g20071' => 'bvu', 'EL10Ac9g21086' => 'bvu', 'EL10Ac9g22407' => 'bvu', 'EL10Ac9g22412' => 'bvu', 'Eucgr.A01119' => 'egr', 'Eucgr.E04043' => 'egr', 'Eucgr.J00428' => 'egr', 'Eucgr.J00958' => 'egr', 'FAN11G3091' => 'fan', 'FAN11G3651' => 'fan', 'FAN16G2566' => 'fan', 'FAN21G3155' => 'fan', 'FAN21G3400' => 'fan', 'FAN21G3543' => 'fan', 'FAN25G0234' => 'fan', 'FAN25G1422' => 'fan', 'FAN25G3392' => 'fan', 'FvH4_3g01940' => 'fve', 'FvH4_3g29870' => 'fve', 'FvH4_3g33680' => 'fve', 'Glyma.09G004200' => 'gma', 'Glyma.11G151288' => 'gma', 'Glyma.11G189100' => 'gma', 'Glyma.12G072500' => 'gma', 'Glyma.12G085500' => 'gma', 'Glyma.12G181800' => 'gma', 'Glyma.12G193000' => 'gma', 'Glyma.13G309300' => 'gma', 'Glyma.13G319000' => 'gma', 'Glyma.17G012600' => 'gma', 'Gohir.A06G148600' => 'ghi', 'Gohir.A07G115800' => 'ghi', 'Gohir.A08G003600' => 'ghi', 'Gohir.A09G093300' => 'ghi', 'Gohir.A09G105400' => 'ghi', 'Gohir.A09G105500' => 'ghi', 'Gohir.D06G154600' => 'ghi', 'Gohir.D07G120200' => 'ghi', 'Gohir.D08G013900' => 'ghi', 'Gohir.D09G093100' => 'ghi', 'Gohir.D09G102200' => 'ghi', 'Gohir.D09G102300' => 'ghi', 'Gorai.001G129400' => 'gra', 'Gorai.004G008200' => 'gra', 'Gorai.006G109800' => 'gra', 'Gorai.006G119500' => 'gra', 'Gorai.006G121300' => 'gra', 'Gorai.010G180700' => 'gra', 'GSVIVG01012716001' => 'vvi', 'GSVIVG01025118001' => 'vvi', 'GSVIVG01030439001' => 'vvi', 'GSVIVG01031397001' => 'vvi', 'HanXRQChr01g0004201' => 'han', 'HanXRQChr02g0054941' => 'han', 'HanXRQChr05g0141811' => 'han', 'HanXRQChr07g0197751' => 'han', 'HanXRQChr11g0346691' => 'han', 'HanXRQChr13g0396971' => 'han', 'HanXRQChr14g0432951' => 'han', 'HanXRQChr14g0452001' => 'han', 'HanXRQChr15g0496681' => 'han', 'HanXRQChr17g0557491' => 'han', 'HanXRQChr17g0557501' => 'han', 'Haze_06809' => 'cav', 'Haze_12852' => 'cav', 'Haze_15850' => 'cav', 'Haze_23446' => 'cav', 'Haze_23942' => 'cav', 'Haze_23943' => 'cav', 'Hma1.2p1_0091F.1_g046450' => 'hma', 'Hma1.2p1_0128F.1_g059910' => 'hma', 'Hma1.2p1_0249F.1_g102260' => 'hma', 'Hma1.2p1_0453F.1_g156190' => 'hma', 'Hma1.2p1_0695F.1_g204380' => 'hma', 'Hma1.2p1_0749F.1_g212650' => 'hma', 'Hma1.2p1_2156F.1_g315420' => 'hma', 'Hma1.2p1_2686F.1_g326940' => 'hma', 'HPP92_006428' => 'vpl', 'HPP92_012069' => 'vpl', 'HPP92_014129' => 'vpl', 'HPP92_014133' => 'vpl', 'HPP92_017315' => 'vpl', 'HPP92_026445' => 'vpl', 'HPP92_026446' => 'vpl', 'Hund00774' => 'sun', 'Hund07682' => 'sun', 'Hund21413' => 'sun', 'Hund23462' => 'sun', 'Hund23463' => 'sun', 'Lalb_Chr03g0027911' => 'lal', 'Lalb_Chr13g0304271' => 'lal', 'Lalb_Chr19g0137471' => 'lal', 'Lalb_Chr22g0350651' => 'lal', 'Lalb_Chr24g0395151' => 'lal', 'Lj1A1231T40' => 'lonja', 'Lj1A221T48' => 'lonja', 'Lj1C924T12' => 'lonja', 'Lj2C993G6' => 'lonja', 'Lj3g0005790' => 'lja', 'Lj3g0015432' => 'lja', 'Lj3g0017722' => 'lja', 'Lj3g0018497' => 'lja', 'Lj4g0025071' => 'lja', 'Lsat_1_v5_gn_1_129680' => 'lsa', 'Lsat_1_v5_gn_2_25321' => 'lsa', 'Lsat_1_v5_gn_2_95461' => 'lsa', 'Lsat_1_v5_gn_4_159620' => 'lsa', 'Lsat_1_v5_gn_6_41301' => 'lsa', 'Lsat_1_v5_gn_6_74660' => 'lsa', 'Lsat_1_v5_gn_7_11520' => 'lsa', 'Lsat_1_v5_gn_9_67680' => 'lsa', 'Manes.04G008300' => 'mes', 'Manes.04G008400' => 'mes', 'Manes.04G026500' => 'mes', 'Manes.10G135300' => 'mes', 'Manes.11G157300' => 'mes', 'Manes.12G074000' => 'mes', 'Manes.16G006200' => 'mes', 'Manes.17G026400' => 'mes', 'Mapoly0024s0086' => 'mpo', 'Mapoly0024s0087' => 'mpo', 'Mapoly0071s0057' => 'mpo', 'Mapoly0204s0012' => 'mpo', 'MBI04_g37681_MAGBIO' => 'mbi', 'MBI05_g17779_MAGBIO' => 'mbi', 'MBI12_g31184_MAGBIO' => 'mbi', 'MBI17_g11083_MAGBIO' => 'mbi', 'MBI18_g03883_MAGBIO' => 'mbi', 'MBI18_g28940_MAGBIO' => 'mbi', 'MCO01G690' => 'mco', 'MD03G1109900' => 'mdo', 'MD03G1134800' => 'mdo', 'MD05G1348000' => 'mdo', 'MD10G1322400' => 'mdo', 'MD11G1123300' => 'mdo', 'MD11G1157600' => 'mdo', 'Medtr2g084875' => 'mtr', 'Medtr2g088130' => 'mtr', 'Medtr4g055310' => 'mtr', 'Medtr4g061070' => 'mtr', 'Medtr4g132250' => 'mtr', 'MELO3C004795.2' => 'cme', 'MELO3C004797.2' => 'cme', 'MELO3C007396.2' => 'cme', 'MELO3C019277.2' => 'cme', 'MELO3C021449.2' => 'cme', 'MELO3C025736.2' => 'cme', 'Migut.D02175' => 'egut', 'Migut.H01573' => 'egut', 'Migut.M01327' => 'egut', 'Migut.N02513' => 'egut', 'MSTRG.14638' => 'ama', 'MSTRG.18632' => 'ama', 'MSTRG.7203' => 'ama', 'Nitab4.5_0000533g0140' => 'nta', 'Nitab4.5_0000888g0150' => 'nta', 'Nitab4.5_0001453g0040' => 'nta', 'Nitab4.5_0002827g0090' => 'nta', 'Nitab4.5_0003082g0040' => 'nta', 'Nitab4.5_0007799g0040' => 'nta', 'Nitab4.5_0008983g0010' => 'nta', 'Nitab4.5_0009017g0020' => 'nta', 'Nn1g02132' => 'nnu', 'Nn1g03492' => 'nnu', 'Nn1g03493' => 'nnu', 'Nn1g03494' => 'nnu', 'Nn1g07164' => 'nnu', 'Nn1g07291' => 'nnu', 'Nn2g10655' => 'nnu', 'Nn2g11652' => 'nnu', 'Nn2g14008' => 'nnu', 'Nn3g17476' => 'nnu', 'Nn3g17477' => 'nnu', 'Nn4g22370' => 'nnu', 'Nn4g25255' => 'nnu', 'Nn5g27755' => 'nnu', 'Nn6g34260' => 'nnu', 'Nn6g35041' => 'nnu', 'Oeu005924.1' => 'oeu', 'Oeu008383.1' => 'oeu', 'Oeu014928.1' => 'oeu', 'Oeu019889.1' => 'oeu', 'Oeu022271.1' => 'oeu', 'Oeu025271.1' => 'oeu', 'Oeu036302.1' => 'oeu', 'Oeu044100.1' => 'oeu', 'Os01g0528300' => 'osa', 'Os03g0286200' => 'osa', 'Os04g0406600' => 'osa', 'Os07g0512000' => 'osa', 'Os07g0694600' => 'osa', 'Os08g0411000' => 'osa', 'Os09g0565700' => 'osa', 'Os09g0566050' => 'osa', 'Os10g0523700' => 'osa', 'Peaxi162Scf00002g00514' => 'pax', 'Peaxi162Scf00047g01817' => 'pax', 'Peaxi162Scf00114g00001' => 'pax', 'Peaxi162Scf00147g00613' => 'pax', 'Peaxi162Scf00389g00425' => 'pax', 'PGR042G1139' => 'pgr', 'PGR042G3273' => 'pgr', 'PGR102G2180' => 'pgr', 'PGR119G0234' => 'pgr', 'PGR119G0668' => 'pgr', 'PGSC0003DMG400007122' => 'stu', 'PGSC0003DMG400016478' => 'stu', 'PGSC0003DMG400025374' => 'stu', 'PGSC0003DMG400026536' => 'stu', 'Phvul.003G079600' => 'pvu', 'Phvul.005G115600' => 'pvu', 'Phvul.005G127100' => 'pvu', 'Phvul.006G149500' => 'pvu', 'Phvul.006G149600' => 'pvu', 'Phvul.011G071800' => 'pvu', 'Phvul.011G090400' => 'pvu', 'Potri.004G013400' => 'ptr', 'Potri.004G188100' => 'ptr', 'Potri.008G195500' => 'ptr', 'Potri.009G148800' => 'ptr', 'Potri.011G004700' => 'ptr', 'Pp3c17_22810' => 'ppa', 'Pp3c18_4480' => 'ppa', 'Pp3c19_13030' => 'ppa', 'Pp3c1_33620' => 'ppa', 'Pp3c2_9380' => 'ppa', 'PRCOL_00001023' => 'pco', 'Prupe.3G216300' => 'ppe', 'Prupe.4G019500' => 'ppe', 'Prupe.6G092500' => 'ppe', 'Prupe.6G119200' => 'ppe', 'Psat0s1945g0080' => 'psa', 'Psat0s4167g0040' => 'psa', 'Psat1g185800' => 'psa', 'Psat4g006440' => 'psa', 'Psat4g006480' => 'psa', 'Psat4g168120' => 'psa', 'Psat5g255680' => 'psa', 'Psat5g261760' => 'psa', 'Psat7g222120' => 'psa', 'PSO063G7252' => 'pso', 'PSO170G4778' => 'pso', 'PSO210G2249' => 'pso', 'PSO339G2411' => 'pso', 'PSO339G2457' => 'pso', 'PSO339G2854' => 'pso', 'PSO339G4288' => 'pso', 'PSO339G4615' => 'pso', 'PSO384G2796' => 'pso', 'PSO384G2940' => 'pso', 'PSO384G4227' => 'pso', 'PSO478G1425' => 'pso', 'PSO541G3863' => 'pso', 'PSO675G0507' => 'pso', 'PSO782G0338' => 'pso', 'PSO832G0644' => 'pso', 'QL01p013664' => 'qlo', 'QL01p036598' => 'qlo', 'QL05p072984' => 'qlo', 'QL08p005768' => 'qlo', 'QL08p032743' => 'qlo', 'QL93p0073_0439' => 'qlo', 'QL93p0073_0444' => 'qlo', 'RcHm_v2.0_Chr5g0002851' => 'rch', 'RcHm_v2.0_Chr5g0055201' => 'rch', 'RcHm_v2.0_Chr5g0061191' => 'rch', 'RcHm_v2.0_Chr7g0203231' => 'rch', 'Rhsim01G0208100' => 'rsi', 'Rhsim01G0208200' => 'rsi', 'Rhsim02G0106500' => 'rsi', 'Rhsim03G0107900' => 'rsi', 'Rhsim06G0163400' => 'rsi', 'Rhsim13G0105200' => 'rsi', 'Sabra04G0006300' => 'sbr', 'Sabra04G0127000' => 'sbr', 'Sabra08G0148700' => 'sbr', 'Sabra09G0117400' => 'sbr', 'SalBow1G3326' => 'sbo', 'SalBow3G3228' => 'sbo', 'SalBow6G1634' => 'sbo', 'SalBow6G3603' => 'sbo', 'SalBow6G5266' => 'sbo', 'SalBow7G2265' => 'sbo', 'SalBow8G0850' => 'sbo', 'SalBow8G2592' => 'sbo', 'Sc05g0009240' => 'sci', 'Sc12g0002300' => 'sci', 'Sc21g0000100' => 'sci', 'Sc21g0004720' => 'sci', 'Sed0002949' => 'sed', 'Sed0004114' => 'sed', 'Sed0004306' => 'sed', 'Sed0006172' => 'sed', 'Sed0008413' => 'sed', 'Sed0013809' => 'sed', 'Sed0019556' => 'sed', 'SEGI_03570' => 'sgi', 'SEGI_07859' => 'sgi', 'SEGI_15042' => 'sgi', 'SEGI_16263' => 'sgi', 'SEGI_16552' => 'sgi', 'SEGI_24331' => 'sgi', 'SEGI_27316' => 'sgi', 'SEGI_29521' => 'sgi', 'SEGI_41342' => 'sgi', 'SGA_v2.0_scaffold27G11617' => 'sas', 'SGA_v2.0_scaffold316G48428' => 'sas', 'SGA_v2.0_scaffold49G18261' => 'sas', 'SGA_v2.0_scaffold7G03831' => 'sas', 'SGA_v2.0_scaffold93G28359' => 'sas', 'SHI02210' => 'shi', 'SHI06028' => 'shi', 'SHI06321' => 'shi', 'SMO111G0012' => 'smo', 'SMO228G0080' => 'smo', 'SMO356G0756' => 'smo', 'Solyc02g080620.3' => 'sly', 'Solyc06g074530.1' => 'sly', 'Solyc11g066890.1' => 'sly', 'Solyc11g072520.3' => 'sly', 'Sopen02g025330' => 'spe', 'Sopen06g031000' => 'spe', 'Sopen09g008240' => 'spe', 'Sopen09g025210' => 'spe', 'Sopen11g026600' => 'spe', 'Sopen11g030170' => 'spe', 'Sp1g10420' => 'spa', 'Sp3g06570' => 'spa', 'Sp4g10660' => 'spa', 'Sp5g16460' => 'spa', 'Sp6g22710' => 'spa', 'TAR365G0112' => 'tar', 'TAR369G0717' => 'tar', 'TAR374G0976' => 'tar', 'TAR623G1128' => 'tar', 'TAR626G1937' => 'tar', 'TAR627G0123' => 'tar', 'TAR628G0305' => 'tar', 'TAR636G1176' => 'tar', 'TAR636G2442' => 'tar', 'THA.LOC104800556' => 'tha', 'THA.LOC104809501' => 'tha', 'THA.LOC104815126' => 'tha', 'THA.LOC104815732' => 'tha', 'THA.LOC104823528' => 'tha', 'Thecc.02G365600' => 'tca', 'Thecc.06G222300' => 'tca', 'Thecc.09G261800' => 'tca', 'Thecc.09G291400' => 'tca', 'Thhalv10003028m.g' => 'esa', 'Thhalv10007886m.g' => 'esa', 'Thhalv10016085m.g' => 'esa', 'Thhalv10016681m.g' => 'esa', 'Thhalv10020951m.g' => 'esa', 'TPR.G15598' => 'tpr', 'TPR.G29305' => 'tpr', 'TPR.G32395' => 'tpr', 'TPR.G36998' => 'tpr', 'TPR.G4227' => 'tpr', 'TWI18G1433' => 'twi', 'TWI31G0755' => 'twi', 'TWI38G0912' => 'twi', 'TWI75G1097' => 'twi', 'TWI75G1619' => 'twi', 'TWI79G1336' => 'twi', 'unitig_0.g943' => 'ugi', 'unitig_0.g944' => 'ugi', 'unitig_22.g6646' => 'ugi', 'unitig_37.g12681' => 'ugi', 'unitig_8.g3290' => 'ugi', 'vmacro03278' => 'vma', 'vmacro12197' => 'vma', 'vmacro14478' => 'vma', 'vmacro15787' => 'vma', 'vmacro15789' => 'vma', 'vmacro15790' => 'vma', 'vmacro15806' => 'vma', 'vmacro22907' => 'vma', 'vmacro22908' => 'vma', 'vmacro22909' => 'vma', 'vmacro23108' => 'vma', 'VMungo0540G0540' => 'vmu', 'VMungo0540G2468' => 'vmu', 'VMungo1080G0390' => 'vmu', 'VMungo1080G1165' => 'vmu', 'VMungo1127G0170' => 'vmu', 'VMungo1127G2099' => 'vmu', 'VMungo1215G3013' => 'vmu', 'Zm00001eb013110' => 'zma', 'Zm00001eb084260' => 'zma', 'Zm00001eb096110' => 'zma', 'Zm00001eb217510' => 'zma', 'Zm00001eb322550' => 'zma', 'Zm00001eb390770' => 'zma', 'Zm00001eb397170' => 'zma', 'Zm00001eb404610' => 'zma', 'Zm00001eb421790' => 'zma' ), 'gf_id' => 'HOM05D000911', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000911' ), 'data_identifier' => 'HOM05D000911', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000911', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27780' => 'bna', 'A03p35380' => 'bna', 'A04p21160' => 'bna', 'A05p40570' => 'bna', 'A06p26900' => 'bna', 'A08p33230' => 'bna', 'A09p65960' => 'bna', 'A10p18290' => 'bna', 'Aa31LG1G12990' => 'aar', 'Aa31LG1G2980' => 'aar', 'Aa31LG4G14320' => 'aar', 'Aa31LG7G11800' => 'aar', 'Aa31sc36G50' => 'aar', 'Aa31sc36G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3721' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5459' => 'aag', 'Actinidia03028' => 'ach', 'Actinidia03753' => 'ach', 'Actinidia04187' => 'ach', 'Actinidia05509' => 'ach', 'Actinidia24180' => 'ach', 'Actinidia26906' => 'ach', 'Actinidia37097' => 'ach', 'Actinidia38249' => 'ach', 'Ah.01g003470' => 'amhyb', 'Ah.01g004580' => 'amhyb', 'Ah.01g014850' => 'amhyb', 'Ah.01g016830' => 'amhyb', 'Ah.14g088000' => 'amhyb', 'AL1G22980' => 'aly', 'AL3G18990' => 'aly', 'AL4G22440' => 'aly', 'AL4G33180' => 'aly', 'AL5G22920' => 'aly', 'AL6G33660' => 'aly', 'AL8G20720' => 'aly', 'Aqoxy1G00935' => 'aox', 'Aqoxy1G02094' => 'aox', 'Aqoxy2G01239' => 'aox', 'Aqoxy4G01870' => 'aox', 'Aqoxy7G00450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.36ZVTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71EM27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5D6C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH3WRE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3NCM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RIM768' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YB5YRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z36GDV' => 'arhy', 'AT1G08250' => 'ath', 'AT1G11790' => 'ath', 'AT2G27820' => 'ath', 'AT3G07630' => 'ath', 'AT3G44720' => 'ath', 'AT5G22630' => 'ath', 'ATR0693G304' => 'atr', 'ATR0794G109' => 'atr', 'ATR0820G120' => 'atr', 'ATR1159G064' => 'atr', 'Atru.chr10.2239' => 'acertr', 'Atru.chr3.3371' => 'acertr', 'Atru.chr6.3202' => 'acertr', 'AUR62006499' => 'cqu', 'AUR62012718' => 'cqu', 'AUR62021938' => 'cqu', 'AUR62023932' => 'cqu', 'AUR62025034' => 'cqu', 'AUR62025035' => 'cqu', 'AUR62038307' => 'cqu', 'AUR62043466' => 'cqu', 'BcaB02g10748' => 'bca', 'BcaB03g13231' => 'bca', 'BcaB03g14689' => 'bca', 'BcaB05g22716' => 'bca', 'BcaB06g28172' => 'bca', 'BcaB08g36413' => 'bca', 'BcaC01g02186' => 'bca', 'BcaC01g04272' => 'bca', 'BcaC02g08080' => 'bca', 'BcaC02g08227' => 'bca', 'BcaC03g13901' => 'bca', 'BcaC04g19593' => 'bca', 'BcaC04g20874' => 'bca', 'BcaC05g29557' => 'bca', 'BcaC06g35505' => 'bca', 'BcaC07g41954' => 'bca', 'BcaC07g41955' => 'bca', 'BcaC07g41956' => 'bca', 'BcaC07g42519' => 'bca', 'BcaC07g42520' => 'bca', 'BcaC07g42523' => 'bca', 'BcaC07g42524' => 'bca', 'BcaC07g42525' => 'bca', 'BcaC08g47480' => 'bca', 'BcaC08g47481' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00530' => 'bna', 'BolC2t07178H' => 'bol', 'BolC3t16567H' => 'bol', 'BolC4t27234H' => 'bol', 'BolC5t29728H' => 'bol', 'BolC5t34622H' => 'bol', 'BolC6t40321H' => 'bol', 'BolC7t42028H' => 'bol', 'BolC8t49125H' => 'bol', 'BolC8t52538H' => 'bol', 'BolC8t52539H' => 'bol', 'BolC9t56681H' => 'bol', 'BolC9t58266H' => 'bol', 'BolSC21t60294H' => 'bol', 'BraA02t05670Z' => 'bra', 'BraA03t12716Z' => 'bra', 'BraA04t17685Z' => 'bra', 'BraA05t22788Z' => 'bra', 'BraA06t24032Z' => 'bra', 'BraA06t25625Z' => 'bra', 'BraA07t27930Z' => 'bra', 'BraA08t35242Z' => 'bra', 'BraA09t38609Z' => 'bra', 'BraA10t43905Z' => 'bra', 'C02p11060' => 'bna', 'C03p42990' => 'bna', 'C03p67310' => 'bna', 'C04p56990' => 'bna', 'C04p58660' => 'bna', 'C05p09890' => 'bna', 'C05p59680' => 'bna', 'C06p19830' => 'bna', 'C06p53040' => 'bna', 'C07p15230' => 'bna', 'C08p50070' => 'bna', 'C08p50090' => 'bna', 'C09p38330' => 'bna', 'C09p53940' => 'bna', 'CAN.G1014.1' => 'can', 'CAN.G644.30' => 'can', 'CAN.G84.47' => 'can', 'CAN.G919.8' => 'can', 'CANSAT54G0113' => 'cansat', 'CANSAT54G1286' => 'cansat', 'CANSAT64G1020' => 'cansat', 'CARHR008080' => 'chi', 'CARHR008090' => 'chi', 'CARHR012130' => 'chi', 'CARHR038390' => 'chi', 'CARHR082330' => 'chi', 'CARHR120520' => 'chi', 'CARHR151470' => 'chi', 'CARHR190950' => 'chi', 'Carub.0001s0760' => 'cru', 'Carub.0001s1146' => 'cru', 'Carub.0003s0721' => 'cru', 'Carub.0004s0858' => 'cru', 'Carub.0005s1040' => 'cru', 'Carub.0006s2035' => 'cru', 'Carub.0015s0005' => 'cru', 'Ca_01607_v3' => 'car', 'Ca_01677_v3' => 'car', 'Ca_06087_v3' => 'car', 'Ca_19238_v3' => 'car', 'Ca_19373_v3' => 'car', 'Ca_21079_v3' => 'car', 'CBR_g54016' => 'cbr', 'CBR_g54018' => 'cbr', 'CBR_g54020' => 'cbr', 'Cc01_g09780' => 'ccan', 'Cc01_g11680' => 'ccan', 'Cc02_g15610' => 'ccan', 'Cc05_g04350' => 'ccan', 'Cc09_g01580' => 'ccan', 'CDE01G0795' => 'cde', 'CDE02G2024' => 'cde', 'CDE02G2260' => 'cde', 'CDE02G4561' => 'cde', 'CDE05G2733' => 'cde', 'CDE05G3422' => 'cde', 'CDE06G2003' => 'cde', 'CDE08G0576' => 'cde', 'CDE09G0048' => 'cde', 'CDE11G0805' => 'cde', 'Cfa003644' => 'cfa', 'Cfa006290' => 'cfa', 'Cfa010080' => 'cfa', 'Cfa011376' => 'cfa', 'Cfa011576' => 'cfa', 'Cfa011577' => 'cfa', 'Cfa014389' => 'cfa', 'Ciclev10006044m.g' => 'ccl', 'Ciclev10006954m.g' => 'ccl', 'Ciclev10015131m.g' => 'ccl', 'Ciclev10015580m.g' => 'ccl', 'Ciclev10028359m.g' => 'ccl', 'Ciclev10028573m.g' => 'ccl', 'CiPaw.03G159300' => 'cil', 'CiPaw.04G115100' => 'cil', 'CiPaw.09G092800' => 'cil', 'CiPaw.10G071800' => 'cil', 'CiPaw.13G105800' => 'cil', 'CiPaw.13G141000' => 'cil', 'CiPaw.14G103400' => 'cil', 'ClCG01G012700' => 'cla', 'ClCG01G012720' => 'cla', 'ClCG01G021920' => 'cla', 'ClCG02G008870' => 'cla', 'ClCG02G020840' => 'cla', 'ClCG02G021930' => 'cla', 'COL.COLO4_19302' => 'col', 'COL.COLO4_25262' => 'col', 'COL.COLO4_31788' => 'col', 'Cpa.g.c34684' => 'cpa', 'Cpa.g.c36520.1' => 'cpa', 'Cpa.g.c45626' => 'cpa', 'Cpa.g.sc121.17' => 'cpa', 'Cpa.g.sc13.22' => 'cpa', 'Cpa.g.sc87.88' => 'cpa', 'Cre06.g261800' => 'cre', 'CsaV3_1G014500' => 'csa', 'CsaV3_1G014510' => 'csa', 'CsaV3_2G034880' => 'csa', 'CsaV3_6G014760' => 'csa', 'CsaV3_6G021500' => 'csa', 'CsaV3_6G048980' => 'csa', 'CSS0002511' => 'camsi', 'CSS0007556' => 'camsi', 'CSS0008532' => 'camsi', 'CSS0009709' => 'camsi', 'CSS0010486' => 'camsi', 'CSS0016768' => 'camsi', 'CSS0023512' => 'camsi', 'CSS0025341' => 'camsi', 'CSS0027999' => 'camsi', 'CSS0028944' => 'camsi', 'CSS0032292' => 'camsi', 'CSS0032464' => 'camsi', 'CSS0037153' => 'camsi', 'CSS0039256' => 'camsi', 'CSS0048392' => 'camsi', 'CSS0050458' => 'camsi', 'DCAR_004224' => 'dca', 'DCAR_006147' => 'dca', 'DCAR_006465' => 'dca', 'DCAR_008159' => 'dca', 'DCAR_012164' => 'dca', 'DCAR_019764' => 'dca', 'Dinv05418' => 'din', 'Dinv10839' => 'din', 'Dinv12521' => 'din', 'Dinv13900' => 'din', 'Dinv29426' => 'din', 'Duzib150G0263' => 'dzi', 'Duzib168G1178' => 'dzi', 'Duzib168G1924' => 'dzi', 'Duzib170G0299' => 'dzi', 'Duzib170G0813' => 'dzi', 'Duzib235G1128' => 'dzi', 'Duzib248G1060' => 'dzi', 'ECA232G1910' => 'eca', 'ECA233G4621' => 'eca', 'ECA238G1216' => 'eca', 'ECA238G1784' => 'eca', 'ECA248G1242' => 'eca', 'EL10Ac8g20071' => 'bvu', 'EL10Ac9g21086' => 'bvu', 'EL10Ac9g22407' => 'bvu', 'EL10Ac9g22412' => 'bvu', 'Eucgr.A01119' => 'egr', 'Eucgr.E04043' => 'egr', 'Eucgr.J00428' => 'egr', 'Eucgr.J00958' => 'egr', 'FAN11G3091' => 'fan', 'FAN11G3651' => 'fan', 'FAN16G2566' => 'fan', 'FAN21G3155' => 'fan', 'FAN21G3400' => 'fan', 'FAN21G3543' => 'fan', 'FAN25G0234' => 'fan', 'FAN25G1422' => 'fan', 'FAN25G3392' => 'fan', 'FvH4_3g01940' => 'fve', 'FvH4_3g29870' => 'fve', 'FvH4_3g33680' => 'fve', 'Glyma.09G004200' => 'gma', 'Glyma.11G151288' => 'gma', 'Glyma.11G189100' => 'gma', 'Glyma.12G072500' => 'gma', 'Glyma.12G085500' => 'gma', 'Glyma.12G181800' => 'gma', 'Glyma.12G193000' => 'gma', 'Glyma.13G309300' => 'gma', 'Glyma.13G319000' => 'gma', 'Glyma.17G012600' => 'gma', 'Gohir.A06G148600' => 'ghi', 'Gohir.A07G115800' => 'ghi', 'Gohir.A08G003600' => 'ghi', 'Gohir.A09G093300' => 'ghi', 'Gohir.A09G105400' => 'ghi', 'Gohir.A09G105500' => 'ghi', 'Gohir.D06G154600' => 'ghi', 'Gohir.D07G120200' => 'ghi', 'Gohir.D08G013900' => 'ghi', 'Gohir.D09G093100' => 'ghi', 'Gohir.D09G102200' => 'ghi', 'Gohir.D09G102300' => 'ghi', 'Gorai.001G129400' => 'gra', 'Gorai.004G008200' => 'gra', 'Gorai.006G109800' => 'gra', 'Gorai.006G119500' => 'gra', 'Gorai.006G121300' => 'gra', 'Gorai.010G180700' => 'gra', 'GSVIVG01012716001' => 'vvi', 'GSVIVG01025118001' => 'vvi', 'GSVIVG01030439001' => 'vvi', 'GSVIVG01031397001' => 'vvi', 'HanXRQChr01g0004201' => 'han', 'HanXRQChr02g0054941' => 'han', 'HanXRQChr05g0141811' => 'han', 'HanXRQChr07g0197751' => 'han', 'HanXRQChr11g0346691' => 'han', 'HanXRQChr13g0396971' => 'han', 'HanXRQChr14g0432951' => 'han', 'HanXRQChr14g0452001' => 'han', 'HanXRQChr15g0496681' => 'han', 'HanXRQChr17g0557491' => 'han', 'HanXRQChr17g0557501' => 'han', 'Haze_06809' => 'cav', 'Haze_12852' => 'cav', 'Haze_15850' => 'cav', 'Haze_23446' => 'cav', 'Haze_23942' => 'cav', 'Haze_23943' => 'cav', 'Hma1.2p1_0091F.1_g046450' => 'hma', 'Hma1.2p1_0128F.1_g059910' => 'hma', 'Hma1.2p1_0249F.1_g102260' => 'hma', 'Hma1.2p1_0453F.1_g156190' => 'hma', 'Hma1.2p1_0695F.1_g204380' => 'hma', 'Hma1.2p1_0749F.1_g212650' => 'hma', 'Hma1.2p1_2156F.1_g315420' => 'hma', 'Hma1.2p1_2686F.1_g326940' => 'hma', 'HPP92_006428' => 'vpl', 'HPP92_012069' => 'vpl', 'HPP92_014129' => 'vpl', 'HPP92_014133' => 'vpl', 'HPP92_017315' => 'vpl', 'HPP92_026445' => 'vpl', 'HPP92_026446' => 'vpl', 'Hund00774' => 'sun', 'Hund07682' => 'sun', 'Hund21413' => 'sun', 'Hund23462' => 'sun', 'Hund23463' => 'sun', 'Lalb_Chr03g0027911' => 'lal', 'Lalb_Chr13g0304271' => 'lal', 'Lalb_Chr19g0137471' => 'lal', 'Lalb_Chr22g0350651' => 'lal', 'Lalb_Chr24g0395151' => 'lal', 'Lj1A1231T40' => 'lonja', 'Lj1A221T48' => 'lonja', 'Lj1C924T12' => 'lonja', 'Lj2C993G6' => 'lonja', 'Lj3g0005790' => 'lja', 'Lj3g0015432' => 'lja', 'Lj3g0017722' => 'lja', 'Lj3g0018497' => 'lja', 'Lj4g0025071' => 'lja', 'Lsat_1_v5_gn_1_129680' => 'lsa', 'Lsat_1_v5_gn_2_25321' => 'lsa', 'Lsat_1_v5_gn_2_95461' => 'lsa', 'Lsat_1_v5_gn_4_159620' => 'lsa', 'Lsat_1_v5_gn_6_41301' => 'lsa', 'Lsat_1_v5_gn_6_74660' => 'lsa', 'Lsat_1_v5_gn_7_11520' => 'lsa', 'Lsat_1_v5_gn_9_67680' => 'lsa', 'Manes.04G008300' => 'mes', 'Manes.04G008400' => 'mes', 'Manes.04G026500' => 'mes', 'Manes.10G135300' => 'mes', 'Manes.11G157300' => 'mes', 'Manes.12G074000' => 'mes', 'Manes.16G006200' => 'mes', 'Manes.17G026400' => 'mes', 'Mapoly0024s0086' => 'mpo', 'Mapoly0024s0087' => 'mpo', 'Mapoly0071s0057' => 'mpo', 'Mapoly0204s0012' => 'mpo', 'MBI04_g37681_MAGBIO' => 'mbi', 'MBI05_g17779_MAGBIO' => 'mbi', 'MBI12_g31184_MAGBIO' => 'mbi', 'MBI17_g11083_MAGBIO' => 'mbi', 'MBI18_g03883_MAGBIO' => 'mbi', 'MBI18_g28940_MAGBIO' => 'mbi', 'MCO01G690' => 'mco', 'MD03G1109900' => 'mdo', 'MD03G1134800' => 'mdo', 'MD05G1348000' => 'mdo', 'MD10G1322400' => 'mdo', 'MD11G1123300' => 'mdo', 'MD11G1157600' => 'mdo', 'Medtr2g084875' => 'mtr', 'Medtr2g088130' => 'mtr', 'Medtr4g055310' => 'mtr', 'Medtr4g061070' => 'mtr', 'Medtr4g132250' => 'mtr', 'MELO3C004795.2' => 'cme', 'MELO3C004797.2' => 'cme', 'MELO3C007396.2' => 'cme', 'MELO3C019277.2' => 'cme', 'MELO3C021449.2' => 'cme', 'MELO3C025736.2' => 'cme', 'Migut.D02175' => 'egut', 'Migut.H01573' => 'egut', 'Migut.M01327' => 'egut', 'Migut.N02513' => 'egut', 'MSTRG.14638' => 'ama', 'MSTRG.18632' => 'ama', 'MSTRG.7203' => 'ama', 'Nitab4.5_0000533g0140' => 'nta', 'Nitab4.5_0000888g0150' => 'nta', 'Nitab4.5_0001453g0040' => 'nta', 'Nitab4.5_0002827g0090' => 'nta', 'Nitab4.5_0003082g0040' => 'nta', 'Nitab4.5_0007799g0040' => 'nta', 'Nitab4.5_0008983g0010' => 'nta', 'Nitab4.5_0009017g0020' => 'nta', 'Nn1g02132' => 'nnu', 'Nn1g03492' => 'nnu', 'Nn1g03493' => 'nnu', 'Nn1g03494' => 'nnu', 'Nn1g07164' => 'nnu', 'Nn1g07291' => 'nnu', 'Nn2g10655' => 'nnu', 'Nn2g11652' => 'nnu', 'Nn2g14008' => 'nnu', 'Nn3g17476' => 'nnu', 'Nn3g17477' => 'nnu', 'Nn4g22370' => 'nnu', 'Nn4g25255' => 'nnu', 'Nn5g27755' => 'nnu', 'Nn6g34260' => 'nnu', 'Nn6g35041' => 'nnu', 'Oeu005924.1' => 'oeu', 'Oeu008383.1' => 'oeu', 'Oeu014928.1' => 'oeu', 'Oeu019889.1' => 'oeu', 'Oeu022271.1' => 'oeu', 'Oeu025271.1' => 'oeu', 'Oeu036302.1' => 'oeu', 'Oeu044100.1' => 'oeu', 'Os01g0528300' => 'osa', 'Os03g0286200' => 'osa', 'Os04g0406600' => 'osa', 'Os07g0512000' => 'osa', 'Os07g0694600' => 'osa', 'Os08g0411000' => 'osa', 'Os09g0565700' => 'osa', 'Os09g0566050' => 'osa', 'Os10g0523700' => 'osa', 'Peaxi162Scf00002g00514' => 'pax', 'Peaxi162Scf00047g01817' => 'pax', 'Peaxi162Scf00114g00001' => 'pax', 'Peaxi162Scf00147g00613' => 'pax', 'Peaxi162Scf00389g00425' => 'pax', 'PGR042G1139' => 'pgr', 'PGR042G3273' => 'pgr', 'PGR102G2180' => 'pgr', 'PGR119G0234' => 'pgr', 'PGR119G0668' => 'pgr', 'PGSC0003DMG400007122' => 'stu', 'PGSC0003DMG400016478' => 'stu', 'PGSC0003DMG400025374' => 'stu', 'PGSC0003DMG400026536' => 'stu', 'Phvul.003G079600' => 'pvu', 'Phvul.005G115600' => 'pvu', 'Phvul.005G127100' => 'pvu', 'Phvul.006G149500' => 'pvu', 'Phvul.006G149600' => 'pvu', 'Phvul.011G071800' => 'pvu', 'Phvul.011G090400' => 'pvu', 'Potri.004G013400' => 'ptr', 'Potri.004G188100' => 'ptr', 'Potri.008G195500' => 'ptr', 'Potri.009G148800' => 'ptr', 'Potri.011G004700' => 'ptr', 'Pp3c17_22810' => 'ppa', 'Pp3c18_4480' => 'ppa', 'Pp3c19_13030' => 'ppa', 'Pp3c1_33620' => 'ppa', 'Pp3c2_9380' => 'ppa', 'PRCOL_00001023' => 'pco', 'Prupe.3G216300' => 'ppe', 'Prupe.4G019500' => 'ppe', 'Prupe.6G092500' => 'ppe', 'Prupe.6G119200' => 'ppe', 'Psat0s1945g0080' => 'psa', 'Psat0s4167g0040' => 'psa', 'Psat1g185800' => 'psa', 'Psat4g006440' => 'psa', 'Psat4g006480' => 'psa', 'Psat4g168120' => 'psa', 'Psat5g255680' => 'psa', 'Psat5g261760' => 'psa', 'Psat7g222120' => 'psa', 'PSO063G7252' => 'pso', 'PSO170G4778' => 'pso', 'PSO210G2249' => 'pso', 'PSO339G2411' => 'pso', 'PSO339G2457' => 'pso', 'PSO339G2854' => 'pso', 'PSO339G4288' => 'pso', 'PSO339G4615' => 'pso', 'PSO384G2796' => 'pso', 'PSO384G2940' => 'pso', 'PSO384G4227' => 'pso', 'PSO478G1425' => 'pso', 'PSO541G3863' => 'pso', 'PSO675G0507' => 'pso', 'PSO782G0338' => 'pso', 'PSO832G0644' => 'pso', 'QL01p013664' => 'qlo', 'QL01p036598' => 'qlo', 'QL05p072984' => 'qlo', 'QL08p005768' => 'qlo', 'QL08p032743' => 'qlo', 'QL93p0073_0439' => 'qlo', 'QL93p0073_0444' => 'qlo', 'RcHm_v2.0_Chr5g0002851' => 'rch', 'RcHm_v2.0_Chr5g0055201' => 'rch', 'RcHm_v2.0_Chr5g0061191' => 'rch', 'RcHm_v2.0_Chr7g0203231' => 'rch', 'Rhsim01G0208100' => 'rsi', 'Rhsim01G0208200' => 'rsi', 'Rhsim02G0106500' => 'rsi', 'Rhsim03G0107900' => 'rsi', 'Rhsim06G0163400' => 'rsi', 'Rhsim13G0105200' => 'rsi', 'Sabra04G0006300' => 'sbr', 'Sabra04G0127000' => 'sbr', 'Sabra08G0148700' => 'sbr', 'Sabra09G0117400' => 'sbr', 'SalBow1G3326' => 'sbo', 'SalBow3G3228' => 'sbo', 'SalBow6G1634' => 'sbo', 'SalBow6G3603' => 'sbo', 'SalBow6G5266' => 'sbo', 'SalBow7G2265' => 'sbo', 'SalBow8G0850' => 'sbo', 'SalBow8G2592' => 'sbo', 'Sc05g0009240' => 'sci', 'Sc12g0002300' => 'sci', 'Sc21g0000100' => 'sci', 'Sc21g0004720' => 'sci', 'Sed0002949' => 'sed', 'Sed0004114' => 'sed', 'Sed0004306' => 'sed', 'Sed0006172' => 'sed', 'Sed0008413' => 'sed', 'Sed0013809' => 'sed', 'Sed0019556' => 'sed', 'SEGI_03570' => 'sgi', 'SEGI_07859' => 'sgi', 'SEGI_15042' => 'sgi', 'SEGI_16263' => 'sgi', 'SEGI_16552' => 'sgi', 'SEGI_24331' => 'sgi', 'SEGI_27316' => 'sgi', 'SEGI_29521' => 'sgi', 'SEGI_41342' => 'sgi', 'SGA_v2.0_scaffold27G11617' => 'sas', 'SGA_v2.0_scaffold316G48428' => 'sas', 'SGA_v2.0_scaffold49G18261' => 'sas', 'SGA_v2.0_scaffold7G03831' => 'sas', 'SGA_v2.0_scaffold93G28359' => 'sas', 'SHI02210' => 'shi', 'SHI06028' => 'shi', 'SHI06321' => 'shi', 'SMO111G0012' => 'smo', 'SMO228G0080' => 'smo', 'SMO356G0756' => 'smo', 'Solyc02g080620.3' => 'sly', 'Solyc06g074530.1' => 'sly', 'Solyc11g066890.1' => 'sly', 'Solyc11g072520.3' => 'sly', 'Sopen02g025330' => 'spe', 'Sopen06g031000' => 'spe', 'Sopen09g008240' => 'spe', 'Sopen09g025210' => 'spe', 'Sopen11g026600' => 'spe', 'Sopen11g030170' => 'spe', 'Sp1g10420' => 'spa', 'Sp3g06570' => 'spa', 'Sp4g10660' => 'spa', 'Sp5g16460' => 'spa', 'Sp6g22710' => 'spa', 'TAR365G0112' => 'tar', 'TAR369G0717' => 'tar', 'TAR374G0976' => 'tar', 'TAR623G1128' => 'tar', 'TAR626G1937' => 'tar', 'TAR627G0123' => 'tar', 'TAR628G0305' => 'tar', 'TAR636G1176' => 'tar', 'TAR636G2442' => 'tar', 'THA.LOC104800556' => 'tha', 'THA.LOC104809501' => 'tha', 'THA.LOC104815126' => 'tha', 'THA.LOC104815732' => 'tha', 'THA.LOC104823528' => 'tha', 'Thecc.02G365600' => 'tca', 'Thecc.06G222300' => 'tca', 'Thecc.09G261800' => 'tca', 'Thecc.09G291400' => 'tca', 'Thhalv10003028m.g' => 'esa', 'Thhalv10007886m.g' => 'esa', 'Thhalv10016085m.g' => 'esa', 'Thhalv10016681m.g' => 'esa', 'Thhalv10020951m.g' => 'esa', 'TPR.G15598' => 'tpr', 'TPR.G29305' => 'tpr', 'TPR.G32395' => 'tpr', 'TPR.G36998' => 'tpr', 'TPR.G4227' => 'tpr', 'TWI18G1433' => 'twi', 'TWI31G0755' => 'twi', 'TWI38G0912' => 'twi', 'TWI75G1097' => 'twi', 'TWI75G1619' => 'twi', 'TWI79G1336' => 'twi', 'unitig_0.g943' => 'ugi', 'unitig_0.g944' => 'ugi', 'unitig_22.g6646' => 'ugi', 'unitig_37.g12681' => 'ugi', 'unitig_8.g3290' => 'ugi', 'vmacro03278' => 'vma', 'vmacro12197' => 'vma', 'vmacro14478' => 'vma', 'vmacro15787' => 'vma', 'vmacro15789' => 'vma', 'vmacro15790' => 'vma', 'vmacro15806' => 'vma', 'vmacro22907' => 'vma', 'vmacro22908' => 'vma', 'vmacro22909' => 'vma', 'vmacro23108' => 'vma', 'VMungo0540G0540' => 'vmu', 'VMungo0540G2468' => 'vmu', 'VMungo1080G0390' => 'vmu', 'VMungo1080G1165' => 'vmu', 'VMungo1127G0170' => 'vmu', 'VMungo1127G2099' => 'vmu', 'VMungo1215G3013' => 'vmu', 'Zm00001eb013110' => 'zma', 'Zm00001eb084260' => 'zma', 'Zm00001eb096110' => 'zma', 'Zm00001eb217510' => 'zma', 'Zm00001eb322550' => 'zma', 'Zm00001eb390770' => 'zma', 'Zm00001eb397170' => 'zma', 'Zm00001eb404610' => 'zma', 'Zm00001eb421790' => 'zma' ) $gf_id = 'HOM05D000911' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000911' ) $data_identifier = 'HOM05D000911' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 16, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 5, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 6, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 8, 'nnu' => (int) 16, 'oeu' => (int) 8, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 5, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 16, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421790' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000911', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27780' => 'bna', 'A03p35380' => 'bna', 'A04p21160' => 'bna', 'A05p40570' => 'bna', 'A06p26900' => 'bna', 'A08p33230' => 'bna', 'A09p65960' => 'bna', 'A10p18290' => 'bna', 'Aa31LG1G12990' => 'aar', 'Aa31LG1G2980' => 'aar', 'Aa31LG4G14320' => 'aar', 'Aa31LG7G11800' => 'aar', 'Aa31sc36G50' => 'aar', 'Aa31sc36G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3721' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5459' => 'aag', 'Actinidia03028' => 'ach', 'Actinidia03753' => 'ach', 'Actinidia04187' => 'ach', 'Actinidia05509' => 'ach', 'Actinidia24180' => 'ach', 'Actinidia26906' => 'ach', 'Actinidia37097' => 'ach', 'Actinidia38249' => 'ach', 'Ah.01g003470' => 'amhyb', 'Ah.01g004580' => 'amhyb', 'Ah.01g014850' => 'amhyb', 'Ah.01g016830' => 'amhyb', 'Ah.14g088000' => 'amhyb', 'AL1G22980' => 'aly', 'AL3G18990' => 'aly', 'AL4G22440' => 'aly', 'AL4G33180' => 'aly', 'AL5G22920' => 'aly', 'AL6G33660' => 'aly', 'AL8G20720' => 'aly', 'Aqoxy1G00935' => 'aox', 'Aqoxy1G02094' => 'aox', 'Aqoxy2G01239' => 'aox', 'Aqoxy4G01870' => 'aox', 'Aqoxy7G00450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.36ZVTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71EM27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5D6C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH3WRE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3NCM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RIM768' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YB5YRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z36GDV' => 'arhy', 'AT1G08250' => 'ath', 'AT1G11790' => 'ath', 'AT2G27820' => 'ath', 'AT3G07630' => 'ath', 'AT3G44720' => 'ath', 'AT5G22630' => 'ath', 'ATR0693G304' => 'atr', 'ATR0794G109' => 'atr', 'ATR0820G120' => 'atr', 'ATR1159G064' => 'atr', 'Atru.chr10.2239' => 'acertr', 'Atru.chr3.3371' => 'acertr', 'Atru.chr6.3202' => 'acertr', 'AUR62006499' => 'cqu', 'AUR62012718' => 'cqu', 'AUR62021938' => 'cqu', 'AUR62023932' => 'cqu', 'AUR62025034' => 'cqu', 'AUR62025035' => 'cqu', 'AUR62038307' => 'cqu', 'AUR62043466' => 'cqu', 'BcaB02g10748' => 'bca', 'BcaB03g13231' => 'bca', 'BcaB03g14689' => 'bca', 'BcaB05g22716' => 'bca', 'BcaB06g28172' => 'bca', 'BcaB08g36413' => 'bca', 'BcaC01g02186' => 'bca', 'BcaC01g04272' => 'bca', 'BcaC02g08080' => 'bca', 'BcaC02g08227' => 'bca', 'BcaC03g13901' => 'bca', 'BcaC04g19593' => 'bca', 'BcaC04g20874' => 'bca', 'BcaC05g29557' => 'bca', 'BcaC06g35505' => 'bca', 'BcaC07g41954' => 'bca', 'BcaC07g41955' => 'bca', 'BcaC07g41956' => 'bca', 'BcaC07g42519' => 'bca', 'BcaC07g42520' => 'bca', 'BcaC07g42523' => 'bca', 'BcaC07g42524' => 'bca', 'BcaC07g42525' => 'bca', 'BcaC08g47480' => 'bca', 'BcaC08g47481' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00530' => 'bna', 'BolC2t07178H' => 'bol', 'BolC3t16567H' => 'bol', 'BolC4t27234H' => 'bol', 'BolC5t29728H' => 'bol', 'BolC5t34622H' => 'bol', 'BolC6t40321H' => 'bol', 'BolC7t42028H' => 'bol', 'BolC8t49125H' => 'bol', 'BolC8t52538H' => 'bol', 'BolC8t52539H' => 'bol', 'BolC9t56681H' => 'bol', 'BolC9t58266H' => 'bol', 'BolSC21t60294H' => 'bol', 'BraA02t05670Z' => 'bra', 'BraA03t12716Z' => 'bra', 'BraA04t17685Z' => 'bra', 'BraA05t22788Z' => 'bra', 'BraA06t24032Z' => 'bra', 'BraA06t25625Z' => 'bra', 'BraA07t27930Z' => 'bra', 'BraA08t35242Z' => 'bra', 'BraA09t38609Z' => 'bra', 'BraA10t43905Z' => 'bra', 'C02p11060' => 'bna', 'C03p42990' => 'bna', 'C03p67310' => 'bna', 'C04p56990' => 'bna', 'C04p58660' => 'bna', 'C05p09890' => 'bna', 'C05p59680' => 'bna', 'C06p19830' => 'bna', 'C06p53040' => 'bna', 'C07p15230' => 'bna', 'C08p50070' => 'bna', 'C08p50090' => 'bna', 'C09p38330' => 'bna', 'C09p53940' => 'bna', 'CAN.G1014.1' => 'can', 'CAN.G644.30' => 'can', 'CAN.G84.47' => 'can', 'CAN.G919.8' => 'can', 'CANSAT54G0113' => 'cansat', 'CANSAT54G1286' => 'cansat', 'CANSAT64G1020' => 'cansat', 'CARHR008080' => 'chi', 'CARHR008090' => 'chi', 'CARHR012130' => 'chi', 'CARHR038390' => 'chi', 'CARHR082330' => 'chi', 'CARHR120520' => 'chi', 'CARHR151470' => 'chi', 'CARHR190950' => 'chi', 'Carub.0001s0760' => 'cru', 'Carub.0001s1146' => 'cru', 'Carub.0003s0721' => 'cru', 'Carub.0004s0858' => 'cru', 'Carub.0005s1040' => 'cru', 'Carub.0006s2035' => 'cru', 'Carub.0015s0005' => 'cru', 'Ca_01607_v3' => 'car', 'Ca_01677_v3' => 'car', 'Ca_06087_v3' => 'car', 'Ca_19238_v3' => 'car', 'Ca_19373_v3' => 'car', 'Ca_21079_v3' => 'car', 'CBR_g54016' => 'cbr', 'CBR_g54018' => 'cbr', 'CBR_g54020' => 'cbr', 'Cc01_g09780' => 'ccan', 'Cc01_g11680' => 'ccan', 'Cc02_g15610' => 'ccan', 'Cc05_g04350' => 'ccan', 'Cc09_g01580' => 'ccan', 'CDE01G0795' => 'cde', 'CDE02G2024' => 'cde', 'CDE02G2260' => 'cde', 'CDE02G4561' => 'cde', 'CDE05G2733' => 'cde', 'CDE05G3422' => 'cde', 'CDE06G2003' => 'cde', 'CDE08G0576' => 'cde', 'CDE09G0048' => 'cde', 'CDE11G0805' => 'cde', 'Cfa003644' => 'cfa', 'Cfa006290' => 'cfa', 'Cfa010080' => 'cfa', 'Cfa011376' => 'cfa', 'Cfa011576' => 'cfa', 'Cfa011577' => 'cfa', 'Cfa014389' => 'cfa', 'Ciclev10006044m.g' => 'ccl', 'Ciclev10006954m.g' => 'ccl', 'Ciclev10015131m.g' => 'ccl', 'Ciclev10015580m.g' => 'ccl', 'Ciclev10028359m.g' => 'ccl', 'Ciclev10028573m.g' => 'ccl', 'CiPaw.03G159300' => 'cil', 'CiPaw.04G115100' => 'cil', 'CiPaw.09G092800' => 'cil', 'CiPaw.10G071800' => 'cil', 'CiPaw.13G105800' => 'cil', 'CiPaw.13G141000' => 'cil', 'CiPaw.14G103400' => 'cil', 'ClCG01G012700' => 'cla', 'ClCG01G012720' => 'cla', 'ClCG01G021920' => 'cla', 'ClCG02G008870' => 'cla', 'ClCG02G020840' => 'cla', 'ClCG02G021930' => 'cla', 'COL.COLO4_19302' => 'col', 'COL.COLO4_25262' => 'col', 'COL.COLO4_31788' => 'col', 'Cpa.g.c34684' => 'cpa', 'Cpa.g.c36520.1' => 'cpa', 'Cpa.g.c45626' => 'cpa', 'Cpa.g.sc121.17' => 'cpa', 'Cpa.g.sc13.22' => 'cpa', 'Cpa.g.sc87.88' => 'cpa', 'Cre06.g261800' => 'cre', 'CsaV3_1G014500' => 'csa', 'CsaV3_1G014510' => 'csa', 'CsaV3_2G034880' => 'csa', 'CsaV3_6G014760' => 'csa', 'CsaV3_6G021500' => 'csa', 'CsaV3_6G048980' => 'csa', 'CSS0002511' => 'camsi', 'CSS0007556' => 'camsi', 'CSS0008532' => 'camsi', 'CSS0009709' => 'camsi', 'CSS0010486' => 'camsi', 'CSS0016768' => 'camsi', 'CSS0023512' => 'camsi', 'CSS0025341' => 'camsi', 'CSS0027999' => 'camsi', 'CSS0028944' => 'camsi', 'CSS0032292' => 'camsi', 'CSS0032464' => 'camsi', 'CSS0037153' => 'camsi', 'CSS0039256' => 'camsi', 'CSS0048392' => 'camsi', 'CSS0050458' => 'camsi', 'DCAR_004224' => 'dca', 'DCAR_006147' => 'dca', 'DCAR_006465' => 'dca', 'DCAR_008159' => 'dca', 'DCAR_012164' => 'dca', 'DCAR_019764' => 'dca', 'Dinv05418' => 'din', 'Dinv10839' => 'din', 'Dinv12521' => 'din', 'Dinv13900' => 'din', 'Dinv29426' => 'din', 'Duzib150G0263' => 'dzi', 'Duzib168G1178' => 'dzi', 'Duzib168G1924' => 'dzi', 'Duzib170G0299' => 'dzi', 'Duzib170G0813' => 'dzi', 'Duzib235G1128' => 'dzi', 'Duzib248G1060' => 'dzi', 'ECA232G1910' => 'eca', 'ECA233G4621' => 'eca', 'ECA238G1216' => 'eca', 'ECA238G1784' => 'eca', 'ECA248G1242' => 'eca', 'EL10Ac8g20071' => 'bvu', 'EL10Ac9g21086' => 'bvu', 'EL10Ac9g22407' => 'bvu', 'EL10Ac9g22412' => 'bvu', 'Eucgr.A01119' => 'egr', 'Eucgr.E04043' => 'egr', 'Eucgr.J00428' => 'egr', 'Eucgr.J00958' => 'egr', 'FAN11G3091' => 'fan', 'FAN11G3651' => 'fan', 'FAN16G2566' => 'fan', 'FAN21G3155' => 'fan', 'FAN21G3400' => 'fan', 'FAN21G3543' => 'fan', 'FAN25G0234' => 'fan', 'FAN25G1422' => 'fan', 'FAN25G3392' => 'fan', 'FvH4_3g01940' => 'fve', 'FvH4_3g29870' => 'fve', 'FvH4_3g33680' => 'fve', 'Glyma.09G004200' => 'gma', 'Glyma.11G151288' => 'gma', 'Glyma.11G189100' => 'gma', 'Glyma.12G072500' => 'gma', 'Glyma.12G085500' => 'gma', 'Glyma.12G181800' => 'gma', 'Glyma.12G193000' => 'gma', 'Glyma.13G309300' => 'gma', 'Glyma.13G319000' => 'gma', 'Glyma.17G012600' => 'gma', 'Gohir.A06G148600' => 'ghi', 'Gohir.A07G115800' => 'ghi', 'Gohir.A08G003600' => 'ghi', 'Gohir.A09G093300' => 'ghi', 'Gohir.A09G105400' => 'ghi', 'Gohir.A09G105500' => 'ghi', 'Gohir.D06G154600' => 'ghi', 'Gohir.D07G120200' => 'ghi', 'Gohir.D08G013900' => 'ghi', 'Gohir.D09G093100' => 'ghi', 'Gohir.D09G102200' => 'ghi', 'Gohir.D09G102300' => 'ghi', 'Gorai.001G129400' => 'gra', 'Gorai.004G008200' => 'gra', 'Gorai.006G109800' => 'gra', 'Gorai.006G119500' => 'gra', 'Gorai.006G121300' => 'gra', 'Gorai.010G180700' => 'gra', 'GSVIVG01012716001' => 'vvi', 'GSVIVG01025118001' => 'vvi', 'GSVIVG01030439001' => 'vvi', 'GSVIVG01031397001' => 'vvi', 'HanXRQChr01g0004201' => 'han', 'HanXRQChr02g0054941' => 'han', 'HanXRQChr05g0141811' => 'han', 'HanXRQChr07g0197751' => 'han', 'HanXRQChr11g0346691' => 'han', 'HanXRQChr13g0396971' => 'han', 'HanXRQChr14g0432951' => 'han', 'HanXRQChr14g0452001' => 'han', 'HanXRQChr15g0496681' => 'han', 'HanXRQChr17g0557491' => 'han', 'HanXRQChr17g0557501' => 'han', 'Haze_06809' => 'cav', 'Haze_12852' => 'cav', 'Haze_15850' => 'cav', 'Haze_23446' => 'cav', 'Haze_23942' => 'cav', 'Haze_23943' => 'cav', 'Hma1.2p1_0091F.1_g046450' => 'hma', 'Hma1.2p1_0128F.1_g059910' => 'hma', 'Hma1.2p1_0249F.1_g102260' => 'hma', 'Hma1.2p1_0453F.1_g156190' => 'hma', 'Hma1.2p1_0695F.1_g204380' => 'hma', 'Hma1.2p1_0749F.1_g212650' => 'hma', 'Hma1.2p1_2156F.1_g315420' => 'hma', 'Hma1.2p1_2686F.1_g326940' => 'hma', 'HPP92_006428' => 'vpl', 'HPP92_012069' => 'vpl', 'HPP92_014129' => 'vpl', 'HPP92_014133' => 'vpl', 'HPP92_017315' => 'vpl', 'HPP92_026445' => 'vpl', 'HPP92_026446' => 'vpl', 'Hund00774' => 'sun', 'Hund07682' => 'sun', 'Hund21413' => 'sun', 'Hund23462' => 'sun', 'Hund23463' => 'sun', 'Lalb_Chr03g0027911' => 'lal', 'Lalb_Chr13g0304271' => 'lal', 'Lalb_Chr19g0137471' => 'lal', 'Lalb_Chr22g0350651' => 'lal', 'Lalb_Chr24g0395151' => 'lal', 'Lj1A1231T40' => 'lonja', 'Lj1A221T48' => 'lonja', 'Lj1C924T12' => 'lonja', 'Lj2C993G6' => 'lonja', 'Lj3g0005790' => 'lja', 'Lj3g0015432' => 'lja', 'Lj3g0017722' => 'lja', 'Lj3g0018497' => 'lja', 'Lj4g0025071' => 'lja', 'Lsat_1_v5_gn_1_129680' => 'lsa', 'Lsat_1_v5_gn_2_25321' => 'lsa', 'Lsat_1_v5_gn_2_95461' => 'lsa', 'Lsat_1_v5_gn_4_159620' => 'lsa', 'Lsat_1_v5_gn_6_41301' => 'lsa', 'Lsat_1_v5_gn_6_74660' => 'lsa', 'Lsat_1_v5_gn_7_11520' => 'lsa', 'Lsat_1_v5_gn_9_67680' => 'lsa', 'Manes.04G008300' => 'mes', 'Manes.04G008400' => 'mes', 'Manes.04G026500' => 'mes', 'Manes.10G135300' => 'mes', 'Manes.11G157300' => 'mes', 'Manes.12G074000' => 'mes', 'Manes.16G006200' => 'mes', 'Manes.17G026400' => 'mes', 'Mapoly0024s0086' => 'mpo', 'Mapoly0024s0087' => 'mpo', 'Mapoly0071s0057' => 'mpo', 'Mapoly0204s0012' => 'mpo', 'MBI04_g37681_MAGBIO' => 'mbi', 'MBI05_g17779_MAGBIO' => 'mbi', 'MBI12_g31184_MAGBIO' => 'mbi', 'MBI17_g11083_MAGBIO' => 'mbi', 'MBI18_g03883_MAGBIO' => 'mbi', 'MBI18_g28940_MAGBIO' => 'mbi', 'MCO01G690' => 'mco', 'MD03G1109900' => 'mdo', 'MD03G1134800' => 'mdo', 'MD05G1348000' => 'mdo', 'MD10G1322400' => 'mdo', 'MD11G1123300' => 'mdo', 'MD11G1157600' => 'mdo', 'Medtr2g084875' => 'mtr', 'Medtr2g088130' => 'mtr', 'Medtr4g055310' => 'mtr', 'Medtr4g061070' => 'mtr', 'Medtr4g132250' => 'mtr', 'MELO3C004795.2' => 'cme', 'MELO3C004797.2' => 'cme', 'MELO3C007396.2' => 'cme', 'MELO3C019277.2' => 'cme', 'MELO3C021449.2' => 'cme', 'MELO3C025736.2' => 'cme', 'Migut.D02175' => 'egut', 'Migut.H01573' => 'egut', 'Migut.M01327' => 'egut', 'Migut.N02513' => 'egut', 'MSTRG.14638' => 'ama', 'MSTRG.18632' => 'ama', 'MSTRG.7203' => 'ama', 'Nitab4.5_0000533g0140' => 'nta', 'Nitab4.5_0000888g0150' => 'nta', 'Nitab4.5_0001453g0040' => 'nta', 'Nitab4.5_0002827g0090' => 'nta', 'Nitab4.5_0003082g0040' => 'nta', 'Nitab4.5_0007799g0040' => 'nta', 'Nitab4.5_0008983g0010' => 'nta', 'Nitab4.5_0009017g0020' => 'nta', 'Nn1g02132' => 'nnu', 'Nn1g03492' => 'nnu', 'Nn1g03493' => 'nnu', 'Nn1g03494' => 'nnu', 'Nn1g07164' => 'nnu', 'Nn1g07291' => 'nnu', 'Nn2g10655' => 'nnu', 'Nn2g11652' => 'nnu', 'Nn2g14008' => 'nnu', 'Nn3g17476' => 'nnu', 'Nn3g17477' => 'nnu', 'Nn4g22370' => 'nnu', 'Nn4g25255' => 'nnu', 'Nn5g27755' => 'nnu', 'Nn6g34260' => 'nnu', 'Nn6g35041' => 'nnu', 'Oeu005924.1' => 'oeu', 'Oeu008383.1' => 'oeu', 'Oeu014928.1' => 'oeu', 'Oeu019889.1' => 'oeu', 'Oeu022271.1' => 'oeu', 'Oeu025271.1' => 'oeu', 'Oeu036302.1' => 'oeu', 'Oeu044100.1' => 'oeu', 'Os01g0528300' => 'osa', 'Os03g0286200' => 'osa', 'Os04g0406600' => 'osa', 'Os07g0512000' => 'osa', 'Os07g0694600' => 'osa', 'Os08g0411000' => 'osa', 'Os09g0565700' => 'osa', 'Os09g0566050' => 'osa', 'Os10g0523700' => 'osa', 'Peaxi162Scf00002g00514' => 'pax', 'Peaxi162Scf00047g01817' => 'pax', 'Peaxi162Scf00114g00001' => 'pax', 'Peaxi162Scf00147g00613' => 'pax', 'Peaxi162Scf00389g00425' => 'pax', 'PGR042G1139' => 'pgr', 'PGR042G3273' => 'pgr', 'PGR102G2180' => 'pgr', 'PGR119G0234' => 'pgr', 'PGR119G0668' => 'pgr', 'PGSC0003DMG400007122' => 'stu', 'PGSC0003DMG400016478' => 'stu', 'PGSC0003DMG400025374' => 'stu', 'PGSC0003DMG400026536' => 'stu', 'Phvul.003G079600' => 'pvu', 'Phvul.005G115600' => 'pvu', 'Phvul.005G127100' => 'pvu', 'Phvul.006G149500' => 'pvu', 'Phvul.006G149600' => 'pvu', 'Phvul.011G071800' => 'pvu', 'Phvul.011G090400' => 'pvu', 'Potri.004G013400' => 'ptr', 'Potri.004G188100' => 'ptr', 'Potri.008G195500' => 'ptr', 'Potri.009G148800' => 'ptr', 'Potri.011G004700' => 'ptr', 'Pp3c17_22810' => 'ppa', 'Pp3c18_4480' => 'ppa', 'Pp3c19_13030' => 'ppa', 'Pp3c1_33620' => 'ppa', 'Pp3c2_9380' => 'ppa', 'PRCOL_00001023' => 'pco', 'Prupe.3G216300' => 'ppe', 'Prupe.4G019500' => 'ppe', 'Prupe.6G092500' => 'ppe', 'Prupe.6G119200' => 'ppe', 'Psat0s1945g0080' => 'psa', 'Psat0s4167g0040' => 'psa', 'Psat1g185800' => 'psa', 'Psat4g006440' => 'psa', 'Psat4g006480' => 'psa', 'Psat4g168120' => 'psa', 'Psat5g255680' => 'psa', 'Psat5g261760' => 'psa', 'Psat7g222120' => 'psa', 'PSO063G7252' => 'pso', 'PSO170G4778' => 'pso', 'PSO210G2249' => 'pso', 'PSO339G2411' => 'pso', 'PSO339G2457' => 'pso', 'PSO339G2854' => 'pso', 'PSO339G4288' => 'pso', 'PSO339G4615' => 'pso', 'PSO384G2796' => 'pso', 'PSO384G2940' => 'pso', 'PSO384G4227' => 'pso', 'PSO478G1425' => 'pso', 'PSO541G3863' => 'pso', 'PSO675G0507' => 'pso', 'PSO782G0338' => 'pso', 'PSO832G0644' => 'pso', 'QL01p013664' => 'qlo', 'QL01p036598' => 'qlo', 'QL05p072984' => 'qlo', 'QL08p005768' => 'qlo', 'QL08p032743' => 'qlo', 'QL93p0073_0439' => 'qlo', 'QL93p0073_0444' => 'qlo', 'RcHm_v2.0_Chr5g0002851' => 'rch', 'RcHm_v2.0_Chr5g0055201' => 'rch', 'RcHm_v2.0_Chr5g0061191' => 'rch', 'RcHm_v2.0_Chr7g0203231' => 'rch', 'Rhsim01G0208100' => 'rsi', 'Rhsim01G0208200' => 'rsi', 'Rhsim02G0106500' => 'rsi', 'Rhsim03G0107900' => 'rsi', 'Rhsim06G0163400' => 'rsi', 'Rhsim13G0105200' => 'rsi', 'Sabra04G0006300' => 'sbr', 'Sabra04G0127000' => 'sbr', 'Sabra08G0148700' => 'sbr', 'Sabra09G0117400' => 'sbr', 'SalBow1G3326' => 'sbo', 'SalBow3G3228' => 'sbo', 'SalBow6G1634' => 'sbo', 'SalBow6G3603' => 'sbo', 'SalBow6G5266' => 'sbo', 'SalBow7G2265' => 'sbo', 'SalBow8G0850' => 'sbo', 'SalBow8G2592' => 'sbo', 'Sc05g0009240' => 'sci', 'Sc12g0002300' => 'sci', 'Sc21g0000100' => 'sci', 'Sc21g0004720' => 'sci', 'Sed0002949' => 'sed', 'Sed0004114' => 'sed', 'Sed0004306' => 'sed', 'Sed0006172' => 'sed', 'Sed0008413' => 'sed', 'Sed0013809' => 'sed', 'Sed0019556' => 'sed', 'SEGI_03570' => 'sgi', 'SEGI_07859' => 'sgi', 'SEGI_15042' => 'sgi', 'SEGI_16263' => 'sgi', 'SEGI_16552' => 'sgi', 'SEGI_24331' => 'sgi', 'SEGI_27316' => 'sgi', 'SEGI_29521' => 'sgi', 'SEGI_41342' => 'sgi', 'SGA_v2.0_scaffold27G11617' => 'sas', 'SGA_v2.0_scaffold316G48428' => 'sas', 'SGA_v2.0_scaffold49G18261' => 'sas', 'SGA_v2.0_scaffold7G03831' => 'sas', 'SGA_v2.0_scaffold93G28359' => 'sas', 'SHI02210' => 'shi', 'SHI06028' => 'shi', 'SHI06321' => 'shi', 'SMO111G0012' => 'smo', 'SMO228G0080' => 'smo', 'SMO356G0756' => 'smo', 'Solyc02g080620.3' => 'sly', 'Solyc06g074530.1' => 'sly', 'Solyc11g066890.1' => 'sly', 'Solyc11g072520.3' => 'sly', 'Sopen02g025330' => 'spe', 'Sopen06g031000' => 'spe', 'Sopen09g008240' => 'spe', 'Sopen09g025210' => 'spe', 'Sopen11g026600' => 'spe', 'Sopen11g030170' => 'spe', 'Sp1g10420' => 'spa', 'Sp3g06570' => 'spa', 'Sp4g10660' => 'spa', 'Sp5g16460' => 'spa', 'Sp6g22710' => 'spa', 'TAR365G0112' => 'tar', 'TAR369G0717' => 'tar', 'TAR374G0976' => 'tar', 'TAR623G1128' => 'tar', 'TAR626G1937' => 'tar', 'TAR627G0123' => 'tar', 'TAR628G0305' => 'tar', 'TAR636G1176' => 'tar', 'TAR636G2442' => 'tar', 'THA.LOC104800556' => 'tha', 'THA.LOC104809501' => 'tha', 'THA.LOC104815126' => 'tha', 'THA.LOC104815732' => 'tha', 'THA.LOC104823528' => 'tha', 'Thecc.02G365600' => 'tca', 'Thecc.06G222300' => 'tca', 'Thecc.09G261800' => 'tca', 'Thecc.09G291400' => 'tca', 'Thhalv10003028m.g' => 'esa', 'Thhalv10007886m.g' => 'esa', 'Thhalv10016085m.g' => 'esa', 'Thhalv10016681m.g' => 'esa', 'Thhalv10020951m.g' => 'esa', 'TPR.G15598' => 'tpr', 'TPR.G29305' => 'tpr', 'TPR.G32395' => 'tpr', 'TPR.G36998' => 'tpr', 'TPR.G4227' => 'tpr', 'TWI18G1433' => 'twi', 'TWI31G0755' => 'twi', 'TWI38G0912' => 'twi', 'TWI75G1097' => 'twi', 'TWI75G1619' => 'twi', 'TWI79G1336' => 'twi', 'unitig_0.g943' => 'ugi', 'unitig_0.g944' => 'ugi', 'unitig_22.g6646' => 'ugi', 'unitig_37.g12681' => 'ugi', 'unitig_8.g3290' => 'ugi', 'vmacro03278' => 'vma', 'vmacro12197' => 'vma', 'vmacro14478' => 'vma', 'vmacro15787' => 'vma', 'vmacro15789' => 'vma', 'vmacro15790' => 'vma', 'vmacro15806' => 'vma', 'vmacro22907' => 'vma', 'vmacro22908' => 'vma', 'vmacro22909' => 'vma', 'vmacro23108' => 'vma', 'VMungo0540G0540' => 'vmu', 'VMungo0540G2468' => 'vmu', 'VMungo1080G0390' => 'vmu', 'VMungo1080G1165' => 'vmu', 'VMungo1127G0170' => 'vmu', 'VMungo1127G2099' => 'vmu', 'VMungo1215G3013' => 'vmu', 'Zm00001eb013110' => 'zma', 'Zm00001eb084260' => 'zma', 'Zm00001eb096110' => 'zma', 'Zm00001eb217510' => 'zma', 'Zm00001eb322550' => 'zma', 'Zm00001eb390770' => 'zma', 'Zm00001eb397170' => 'zma', 'Zm00001eb404610' => 'zma', 'Zm00001eb421790' => 'zma' ), 'gf_id' => 'HOM05D000911', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000911' ), 'data_identifier' => 'HOM05D000911', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000911', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27780' => 'bna', 'A03p35380' => 'bna', 'A04p21160' => 'bna', 'A05p40570' => 'bna', 'A06p26900' => 'bna', 'A08p33230' => 'bna', 'A09p65960' => 'bna', 'A10p18290' => 'bna', 'Aa31LG1G12990' => 'aar', 'Aa31LG1G2980' => 'aar', 'Aa31LG4G14320' => 'aar', 'Aa31LG7G11800' => 'aar', 'Aa31sc36G50' => 'aar', 'Aa31sc36G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3721' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5459' => 'aag', 'Actinidia03028' => 'ach', 'Actinidia03753' => 'ach', 'Actinidia04187' => 'ach', 'Actinidia05509' => 'ach', 'Actinidia24180' => 'ach', 'Actinidia26906' => 'ach', 'Actinidia37097' => 'ach', 'Actinidia38249' => 'ach', 'Ah.01g003470' => 'amhyb', 'Ah.01g004580' => 'amhyb', 'Ah.01g014850' => 'amhyb', 'Ah.01g016830' => 'amhyb', 'Ah.14g088000' => 'amhyb', 'AL1G22980' => 'aly', 'AL3G18990' => 'aly', 'AL4G22440' => 'aly', 'AL4G33180' => 'aly', 'AL5G22920' => 'aly', 'AL6G33660' => 'aly', 'AL8G20720' => 'aly', 'Aqoxy1G00935' => 'aox', 'Aqoxy1G02094' => 'aox', 'Aqoxy2G01239' => 'aox', 'Aqoxy4G01870' => 'aox', 'Aqoxy7G00450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.36ZVTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71EM27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5D6C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH3WRE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3NCM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RIM768' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YB5YRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z36GDV' => 'arhy', 'AT1G08250' => 'ath', 'AT1G11790' => 'ath', 'AT2G27820' => 'ath', 'AT3G07630' => 'ath', 'AT3G44720' => 'ath', 'AT5G22630' => 'ath', 'ATR0693G304' => 'atr', 'ATR0794G109' => 'atr', 'ATR0820G120' => 'atr', 'ATR1159G064' => 'atr', 'Atru.chr10.2239' => 'acertr', 'Atru.chr3.3371' => 'acertr', 'Atru.chr6.3202' => 'acertr', 'AUR62006499' => 'cqu', 'AUR62012718' => 'cqu', 'AUR62021938' => 'cqu', 'AUR62023932' => 'cqu', 'AUR62025034' => 'cqu', 'AUR62025035' => 'cqu', 'AUR62038307' => 'cqu', 'AUR62043466' => 'cqu', 'BcaB02g10748' => 'bca', 'BcaB03g13231' => 'bca', 'BcaB03g14689' => 'bca', 'BcaB05g22716' => 'bca', 'BcaB06g28172' => 'bca', 'BcaB08g36413' => 'bca', 'BcaC01g02186' => 'bca', 'BcaC01g04272' => 'bca', 'BcaC02g08080' => 'bca', 'BcaC02g08227' => 'bca', 'BcaC03g13901' => 'bca', 'BcaC04g19593' => 'bca', 'BcaC04g20874' => 'bca', 'BcaC05g29557' => 'bca', 'BcaC06g35505' => 'bca', 'BcaC07g41954' => 'bca', 'BcaC07g41955' => 'bca', 'BcaC07g41956' => 'bca', 'BcaC07g42519' => 'bca', 'BcaC07g42520' => 'bca', 'BcaC07g42523' => 'bca', 'BcaC07g42524' => 'bca', 'BcaC07g42525' => 'bca', 'BcaC08g47480' => 'bca', 'BcaC08g47481' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00530' => 'bna', 'BolC2t07178H' => 'bol', 'BolC3t16567H' => 'bol', 'BolC4t27234H' => 'bol', 'BolC5t29728H' => 'bol', 'BolC5t34622H' => 'bol', 'BolC6t40321H' => 'bol', 'BolC7t42028H' => 'bol', 'BolC8t49125H' => 'bol', 'BolC8t52538H' => 'bol', 'BolC8t52539H' => 'bol', 'BolC9t56681H' => 'bol', 'BolC9t58266H' => 'bol', 'BolSC21t60294H' => 'bol', 'BraA02t05670Z' => 'bra', 'BraA03t12716Z' => 'bra', 'BraA04t17685Z' => 'bra', 'BraA05t22788Z' => 'bra', 'BraA06t24032Z' => 'bra', 'BraA06t25625Z' => 'bra', 'BraA07t27930Z' => 'bra', 'BraA08t35242Z' => 'bra', 'BraA09t38609Z' => 'bra', 'BraA10t43905Z' => 'bra', 'C02p11060' => 'bna', 'C03p42990' => 'bna', 'C03p67310' => 'bna', 'C04p56990' => 'bna', 'C04p58660' => 'bna', 'C05p09890' => 'bna', 'C05p59680' => 'bna', 'C06p19830' => 'bna', 'C06p53040' => 'bna', 'C07p15230' => 'bna', 'C08p50070' => 'bna', 'C08p50090' => 'bna', 'C09p38330' => 'bna', 'C09p53940' => 'bna', 'CAN.G1014.1' => 'can', 'CAN.G644.30' => 'can', 'CAN.G84.47' => 'can', 'CAN.G919.8' => 'can', 'CANSAT54G0113' => 'cansat', 'CANSAT54G1286' => 'cansat', 'CANSAT64G1020' => 'cansat', 'CARHR008080' => 'chi', 'CARHR008090' => 'chi', 'CARHR012130' => 'chi', 'CARHR038390' => 'chi', 'CARHR082330' => 'chi', 'CARHR120520' => 'chi', 'CARHR151470' => 'chi', 'CARHR190950' => 'chi', 'Carub.0001s0760' => 'cru', 'Carub.0001s1146' => 'cru', 'Carub.0003s0721' => 'cru', 'Carub.0004s0858' => 'cru', 'Carub.0005s1040' => 'cru', 'Carub.0006s2035' => 'cru', 'Carub.0015s0005' => 'cru', 'Ca_01607_v3' => 'car', 'Ca_01677_v3' => 'car', 'Ca_06087_v3' => 'car', 'Ca_19238_v3' => 'car', 'Ca_19373_v3' => 'car', 'Ca_21079_v3' => 'car', 'CBR_g54016' => 'cbr', 'CBR_g54018' => 'cbr', 'CBR_g54020' => 'cbr', 'Cc01_g09780' => 'ccan', 'Cc01_g11680' => 'ccan', 'Cc02_g15610' => 'ccan', 'Cc05_g04350' => 'ccan', 'Cc09_g01580' => 'ccan', 'CDE01G0795' => 'cde', 'CDE02G2024' => 'cde', 'CDE02G2260' => 'cde', 'CDE02G4561' => 'cde', 'CDE05G2733' => 'cde', 'CDE05G3422' => 'cde', 'CDE06G2003' => 'cde', 'CDE08G0576' => 'cde', 'CDE09G0048' => 'cde', 'CDE11G0805' => 'cde', 'Cfa003644' => 'cfa', 'Cfa006290' => 'cfa', 'Cfa010080' => 'cfa', 'Cfa011376' => 'cfa', 'Cfa011576' => 'cfa', 'Cfa011577' => 'cfa', 'Cfa014389' => 'cfa', 'Ciclev10006044m.g' => 'ccl', 'Ciclev10006954m.g' => 'ccl', 'Ciclev10015131m.g' => 'ccl', 'Ciclev10015580m.g' => 'ccl', 'Ciclev10028359m.g' => 'ccl', 'Ciclev10028573m.g' => 'ccl', 'CiPaw.03G159300' => 'cil', 'CiPaw.04G115100' => 'cil', 'CiPaw.09G092800' => 'cil', 'CiPaw.10G071800' => 'cil', 'CiPaw.13G105800' => 'cil', 'CiPaw.13G141000' => 'cil', 'CiPaw.14G103400' => 'cil', 'ClCG01G012700' => 'cla', 'ClCG01G012720' => 'cla', 'ClCG01G021920' => 'cla', 'ClCG02G008870' => 'cla', 'ClCG02G020840' => 'cla', 'ClCG02G021930' => 'cla', 'COL.COLO4_19302' => 'col', 'COL.COLO4_25262' => 'col', 'COL.COLO4_31788' => 'col', 'Cpa.g.c34684' => 'cpa', 'Cpa.g.c36520.1' => 'cpa', 'Cpa.g.c45626' => 'cpa', 'Cpa.g.sc121.17' => 'cpa', 'Cpa.g.sc13.22' => 'cpa', 'Cpa.g.sc87.88' => 'cpa', 'Cre06.g261800' => 'cre', 'CsaV3_1G014500' => 'csa', 'CsaV3_1G014510' => 'csa', 'CsaV3_2G034880' => 'csa', 'CsaV3_6G014760' => 'csa', 'CsaV3_6G021500' => 'csa', 'CsaV3_6G048980' => 'csa', 'CSS0002511' => 'camsi', 'CSS0007556' => 'camsi', 'CSS0008532' => 'camsi', 'CSS0009709' => 'camsi', 'CSS0010486' => 'camsi', 'CSS0016768' => 'camsi', 'CSS0023512' => 'camsi', 'CSS0025341' => 'camsi', 'CSS0027999' => 'camsi', 'CSS0028944' => 'camsi', 'CSS0032292' => 'camsi', 'CSS0032464' => 'camsi', 'CSS0037153' => 'camsi', 'CSS0039256' => 'camsi', 'CSS0048392' => 'camsi', 'CSS0050458' => 'camsi', 'DCAR_004224' => 'dca', 'DCAR_006147' => 'dca', 'DCAR_006465' => 'dca', 'DCAR_008159' => 'dca', 'DCAR_012164' => 'dca', 'DCAR_019764' => 'dca', 'Dinv05418' => 'din', 'Dinv10839' => 'din', 'Dinv12521' => 'din', 'Dinv13900' => 'din', 'Dinv29426' => 'din', 'Duzib150G0263' => 'dzi', 'Duzib168G1178' => 'dzi', 'Duzib168G1924' => 'dzi', 'Duzib170G0299' => 'dzi', 'Duzib170G0813' => 'dzi', 'Duzib235G1128' => 'dzi', 'Duzib248G1060' => 'dzi', 'ECA232G1910' => 'eca', 'ECA233G4621' => 'eca', 'ECA238G1216' => 'eca', 'ECA238G1784' => 'eca', 'ECA248G1242' => 'eca', 'EL10Ac8g20071' => 'bvu', 'EL10Ac9g21086' => 'bvu', 'EL10Ac9g22407' => 'bvu', 'EL10Ac9g22412' => 'bvu', 'Eucgr.A01119' => 'egr', 'Eucgr.E04043' => 'egr', 'Eucgr.J00428' => 'egr', 'Eucgr.J00958' => 'egr', 'FAN11G3091' => 'fan', 'FAN11G3651' => 'fan', 'FAN16G2566' => 'fan', 'FAN21G3155' => 'fan', 'FAN21G3400' => 'fan', 'FAN21G3543' => 'fan', 'FAN25G0234' => 'fan', 'FAN25G1422' => 'fan', 'FAN25G3392' => 'fan', 'FvH4_3g01940' => 'fve', 'FvH4_3g29870' => 'fve', 'FvH4_3g33680' => 'fve', 'Glyma.09G004200' => 'gma', 'Glyma.11G151288' => 'gma', 'Glyma.11G189100' => 'gma', 'Glyma.12G072500' => 'gma', 'Glyma.12G085500' => 'gma', 'Glyma.12G181800' => 'gma', 'Glyma.12G193000' => 'gma', 'Glyma.13G309300' => 'gma', 'Glyma.13G319000' => 'gma', 'Glyma.17G012600' => 'gma', 'Gohir.A06G148600' => 'ghi', 'Gohir.A07G115800' => 'ghi', 'Gohir.A08G003600' => 'ghi', 'Gohir.A09G093300' => 'ghi', 'Gohir.A09G105400' => 'ghi', 'Gohir.A09G105500' => 'ghi', 'Gohir.D06G154600' => 'ghi', 'Gohir.D07G120200' => 'ghi', 'Gohir.D08G013900' => 'ghi', 'Gohir.D09G093100' => 'ghi', 'Gohir.D09G102200' => 'ghi', 'Gohir.D09G102300' => 'ghi', 'Gorai.001G129400' => 'gra', 'Gorai.004G008200' => 'gra', 'Gorai.006G109800' => 'gra', 'Gorai.006G119500' => 'gra', 'Gorai.006G121300' => 'gra', 'Gorai.010G180700' => 'gra', 'GSVIVG01012716001' => 'vvi', 'GSVIVG01025118001' => 'vvi', 'GSVIVG01030439001' => 'vvi', 'GSVIVG01031397001' => 'vvi', 'HanXRQChr01g0004201' => 'han', 'HanXRQChr02g0054941' => 'han', 'HanXRQChr05g0141811' => 'han', 'HanXRQChr07g0197751' => 'han', 'HanXRQChr11g0346691' => 'han', 'HanXRQChr13g0396971' => 'han', 'HanXRQChr14g0432951' => 'han', 'HanXRQChr14g0452001' => 'han', 'HanXRQChr15g0496681' => 'han', 'HanXRQChr17g0557491' => 'han', 'HanXRQChr17g0557501' => 'han', 'Haze_06809' => 'cav', 'Haze_12852' => 'cav', 'Haze_15850' => 'cav', 'Haze_23446' => 'cav', 'Haze_23942' => 'cav', 'Haze_23943' => 'cav', 'Hma1.2p1_0091F.1_g046450' => 'hma', 'Hma1.2p1_0128F.1_g059910' => 'hma', 'Hma1.2p1_0249F.1_g102260' => 'hma', 'Hma1.2p1_0453F.1_g156190' => 'hma', 'Hma1.2p1_0695F.1_g204380' => 'hma', 'Hma1.2p1_0749F.1_g212650' => 'hma', 'Hma1.2p1_2156F.1_g315420' => 'hma', 'Hma1.2p1_2686F.1_g326940' => 'hma', 'HPP92_006428' => 'vpl', 'HPP92_012069' => 'vpl', 'HPP92_014129' => 'vpl', 'HPP92_014133' => 'vpl', 'HPP92_017315' => 'vpl', 'HPP92_026445' => 'vpl', 'HPP92_026446' => 'vpl', 'Hund00774' => 'sun', 'Hund07682' => 'sun', 'Hund21413' => 'sun', 'Hund23462' => 'sun', 'Hund23463' => 'sun', 'Lalb_Chr03g0027911' => 'lal', 'Lalb_Chr13g0304271' => 'lal', 'Lalb_Chr19g0137471' => 'lal', 'Lalb_Chr22g0350651' => 'lal', 'Lalb_Chr24g0395151' => 'lal', 'Lj1A1231T40' => 'lonja', 'Lj1A221T48' => 'lonja', 'Lj1C924T12' => 'lonja', 'Lj2C993G6' => 'lonja', 'Lj3g0005790' => 'lja', 'Lj3g0015432' => 'lja', 'Lj3g0017722' => 'lja', 'Lj3g0018497' => 'lja', 'Lj4g0025071' => 'lja', 'Lsat_1_v5_gn_1_129680' => 'lsa', 'Lsat_1_v5_gn_2_25321' => 'lsa', 'Lsat_1_v5_gn_2_95461' => 'lsa', 'Lsat_1_v5_gn_4_159620' => 'lsa', 'Lsat_1_v5_gn_6_41301' => 'lsa', 'Lsat_1_v5_gn_6_74660' => 'lsa', 'Lsat_1_v5_gn_7_11520' => 'lsa', 'Lsat_1_v5_gn_9_67680' => 'lsa', 'Manes.04G008300' => 'mes', 'Manes.04G008400' => 'mes', 'Manes.04G026500' => 'mes', 'Manes.10G135300' => 'mes', 'Manes.11G157300' => 'mes', 'Manes.12G074000' => 'mes', 'Manes.16G006200' => 'mes', 'Manes.17G026400' => 'mes', 'Mapoly0024s0086' => 'mpo', 'Mapoly0024s0087' => 'mpo', 'Mapoly0071s0057' => 'mpo', 'Mapoly0204s0012' => 'mpo', 'MBI04_g37681_MAGBIO' => 'mbi', 'MBI05_g17779_MAGBIO' => 'mbi', 'MBI12_g31184_MAGBIO' => 'mbi', 'MBI17_g11083_MAGBIO' => 'mbi', 'MBI18_g03883_MAGBIO' => 'mbi', 'MBI18_g28940_MAGBIO' => 'mbi', 'MCO01G690' => 'mco', 'MD03G1109900' => 'mdo', 'MD03G1134800' => 'mdo', 'MD05G1348000' => 'mdo', 'MD10G1322400' => 'mdo', 'MD11G1123300' => 'mdo', 'MD11G1157600' => 'mdo', 'Medtr2g084875' => 'mtr', 'Medtr2g088130' => 'mtr', 'Medtr4g055310' => 'mtr', 'Medtr4g061070' => 'mtr', 'Medtr4g132250' => 'mtr', 'MELO3C004795.2' => 'cme', 'MELO3C004797.2' => 'cme', 'MELO3C007396.2' => 'cme', 'MELO3C019277.2' => 'cme', 'MELO3C021449.2' => 'cme', 'MELO3C025736.2' => 'cme', 'Migut.D02175' => 'egut', 'Migut.H01573' => 'egut', 'Migut.M01327' => 'egut', 'Migut.N02513' => 'egut', 'MSTRG.14638' => 'ama', 'MSTRG.18632' => 'ama', 'MSTRG.7203' => 'ama', 'Nitab4.5_0000533g0140' => 'nta', 'Nitab4.5_0000888g0150' => 'nta', 'Nitab4.5_0001453g0040' => 'nta', 'Nitab4.5_0002827g0090' => 'nta', 'Nitab4.5_0003082g0040' => 'nta', 'Nitab4.5_0007799g0040' => 'nta', 'Nitab4.5_0008983g0010' => 'nta', 'Nitab4.5_0009017g0020' => 'nta', 'Nn1g02132' => 'nnu', 'Nn1g03492' => 'nnu', 'Nn1g03493' => 'nnu', 'Nn1g03494' => 'nnu', 'Nn1g07164' => 'nnu', 'Nn1g07291' => 'nnu', 'Nn2g10655' => 'nnu', 'Nn2g11652' => 'nnu', 'Nn2g14008' => 'nnu', 'Nn3g17476' => 'nnu', 'Nn3g17477' => 'nnu', 'Nn4g22370' => 'nnu', 'Nn4g25255' => 'nnu', 'Nn5g27755' => 'nnu', 'Nn6g34260' => 'nnu', 'Nn6g35041' => 'nnu', 'Oeu005924.1' => 'oeu', 'Oeu008383.1' => 'oeu', 'Oeu014928.1' => 'oeu', 'Oeu019889.1' => 'oeu', 'Oeu022271.1' => 'oeu', 'Oeu025271.1' => 'oeu', 'Oeu036302.1' => 'oeu', 'Oeu044100.1' => 'oeu', 'Os01g0528300' => 'osa', 'Os03g0286200' => 'osa', 'Os04g0406600' => 'osa', 'Os07g0512000' => 'osa', 'Os07g0694600' => 'osa', 'Os08g0411000' => 'osa', 'Os09g0565700' => 'osa', 'Os09g0566050' => 'osa', 'Os10g0523700' => 'osa', 'Peaxi162Scf00002g00514' => 'pax', 'Peaxi162Scf00047g01817' => 'pax', 'Peaxi162Scf00114g00001' => 'pax', 'Peaxi162Scf00147g00613' => 'pax', 'Peaxi162Scf00389g00425' => 'pax', 'PGR042G1139' => 'pgr', 'PGR042G3273' => 'pgr', 'PGR102G2180' => 'pgr', 'PGR119G0234' => 'pgr', 'PGR119G0668' => 'pgr', 'PGSC0003DMG400007122' => 'stu', 'PGSC0003DMG400016478' => 'stu', 'PGSC0003DMG400025374' => 'stu', 'PGSC0003DMG400026536' => 'stu', 'Phvul.003G079600' => 'pvu', 'Phvul.005G115600' => 'pvu', 'Phvul.005G127100' => 'pvu', 'Phvul.006G149500' => 'pvu', 'Phvul.006G149600' => 'pvu', 'Phvul.011G071800' => 'pvu', 'Phvul.011G090400' => 'pvu', 'Potri.004G013400' => 'ptr', 'Potri.004G188100' => 'ptr', 'Potri.008G195500' => 'ptr', 'Potri.009G148800' => 'ptr', 'Potri.011G004700' => 'ptr', 'Pp3c17_22810' => 'ppa', 'Pp3c18_4480' => 'ppa', 'Pp3c19_13030' => 'ppa', 'Pp3c1_33620' => 'ppa', 'Pp3c2_9380' => 'ppa', 'PRCOL_00001023' => 'pco', 'Prupe.3G216300' => 'ppe', 'Prupe.4G019500' => 'ppe', 'Prupe.6G092500' => 'ppe', 'Prupe.6G119200' => 'ppe', 'Psat0s1945g0080' => 'psa', 'Psat0s4167g0040' => 'psa', 'Psat1g185800' => 'psa', 'Psat4g006440' => 'psa', 'Psat4g006480' => 'psa', 'Psat4g168120' => 'psa', 'Psat5g255680' => 'psa', 'Psat5g261760' => 'psa', 'Psat7g222120' => 'psa', 'PSO063G7252' => 'pso', 'PSO170G4778' => 'pso', 'PSO210G2249' => 'pso', 'PSO339G2411' => 'pso', 'PSO339G2457' => 'pso', 'PSO339G2854' => 'pso', 'PSO339G4288' => 'pso', 'PSO339G4615' => 'pso', 'PSO384G2796' => 'pso', 'PSO384G2940' => 'pso', 'PSO384G4227' => 'pso', 'PSO478G1425' => 'pso', 'PSO541G3863' => 'pso', 'PSO675G0507' => 'pso', 'PSO782G0338' => 'pso', 'PSO832G0644' => 'pso', 'QL01p013664' => 'qlo', 'QL01p036598' => 'qlo', 'QL05p072984' => 'qlo', 'QL08p005768' => 'qlo', 'QL08p032743' => 'qlo', 'QL93p0073_0439' => 'qlo', 'QL93p0073_0444' => 'qlo', 'RcHm_v2.0_Chr5g0002851' => 'rch', 'RcHm_v2.0_Chr5g0055201' => 'rch', 'RcHm_v2.0_Chr5g0061191' => 'rch', 'RcHm_v2.0_Chr7g0203231' => 'rch', 'Rhsim01G0208100' => 'rsi', 'Rhsim01G0208200' => 'rsi', 'Rhsim02G0106500' => 'rsi', 'Rhsim03G0107900' => 'rsi', 'Rhsim06G0163400' => 'rsi', 'Rhsim13G0105200' => 'rsi', 'Sabra04G0006300' => 'sbr', 'Sabra04G0127000' => 'sbr', 'Sabra08G0148700' => 'sbr', 'Sabra09G0117400' => 'sbr', 'SalBow1G3326' => 'sbo', 'SalBow3G3228' => 'sbo', 'SalBow6G1634' => 'sbo', 'SalBow6G3603' => 'sbo', 'SalBow6G5266' => 'sbo', 'SalBow7G2265' => 'sbo', 'SalBow8G0850' => 'sbo', 'SalBow8G2592' => 'sbo', 'Sc05g0009240' => 'sci', 'Sc12g0002300' => 'sci', 'Sc21g0000100' => 'sci', 'Sc21g0004720' => 'sci', 'Sed0002949' => 'sed', 'Sed0004114' => 'sed', 'Sed0004306' => 'sed', 'Sed0006172' => 'sed', 'Sed0008413' => 'sed', 'Sed0013809' => 'sed', 'Sed0019556' => 'sed', 'SEGI_03570' => 'sgi', 'SEGI_07859' => 'sgi', 'SEGI_15042' => 'sgi', 'SEGI_16263' => 'sgi', 'SEGI_16552' => 'sgi', 'SEGI_24331' => 'sgi', 'SEGI_27316' => 'sgi', 'SEGI_29521' => 'sgi', 'SEGI_41342' => 'sgi', 'SGA_v2.0_scaffold27G11617' => 'sas', 'SGA_v2.0_scaffold316G48428' => 'sas', 'SGA_v2.0_scaffold49G18261' => 'sas', 'SGA_v2.0_scaffold7G03831' => 'sas', 'SGA_v2.0_scaffold93G28359' => 'sas', 'SHI02210' => 'shi', 'SHI06028' => 'shi', 'SHI06321' => 'shi', 'SMO111G0012' => 'smo', 'SMO228G0080' => 'smo', 'SMO356G0756' => 'smo', 'Solyc02g080620.3' => 'sly', 'Solyc06g074530.1' => 'sly', 'Solyc11g066890.1' => 'sly', 'Solyc11g072520.3' => 'sly', 'Sopen02g025330' => 'spe', 'Sopen06g031000' => 'spe', 'Sopen09g008240' => 'spe', 'Sopen09g025210' => 'spe', 'Sopen11g026600' => 'spe', 'Sopen11g030170' => 'spe', 'Sp1g10420' => 'spa', 'Sp3g06570' => 'spa', 'Sp4g10660' => 'spa', 'Sp5g16460' => 'spa', 'Sp6g22710' => 'spa', 'TAR365G0112' => 'tar', 'TAR369G0717' => 'tar', 'TAR374G0976' => 'tar', 'TAR623G1128' => 'tar', 'TAR626G1937' => 'tar', 'TAR627G0123' => 'tar', 'TAR628G0305' => 'tar', 'TAR636G1176' => 'tar', 'TAR636G2442' => 'tar', 'THA.LOC104800556' => 'tha', 'THA.LOC104809501' => 'tha', 'THA.LOC104815126' => 'tha', 'THA.LOC104815732' => 'tha', 'THA.LOC104823528' => 'tha', 'Thecc.02G365600' => 'tca', 'Thecc.06G222300' => 'tca', 'Thecc.09G261800' => 'tca', 'Thecc.09G291400' => 'tca', 'Thhalv10003028m.g' => 'esa', 'Thhalv10007886m.g' => 'esa', 'Thhalv10016085m.g' => 'esa', 'Thhalv10016681m.g' => 'esa', 'Thhalv10020951m.g' => 'esa', 'TPR.G15598' => 'tpr', 'TPR.G29305' => 'tpr', 'TPR.G32395' => 'tpr', 'TPR.G36998' => 'tpr', 'TPR.G4227' => 'tpr', 'TWI18G1433' => 'twi', 'TWI31G0755' => 'twi', 'TWI38G0912' => 'twi', 'TWI75G1097' => 'twi', 'TWI75G1619' => 'twi', 'TWI79G1336' => 'twi', 'unitig_0.g943' => 'ugi', 'unitig_0.g944' => 'ugi', 'unitig_22.g6646' => 'ugi', 'unitig_37.g12681' => 'ugi', 'unitig_8.g3290' => 'ugi', 'vmacro03278' => 'vma', 'vmacro12197' => 'vma', 'vmacro14478' => 'vma', 'vmacro15787' => 'vma', 'vmacro15789' => 'vma', 'vmacro15790' => 'vma', 'vmacro15806' => 'vma', 'vmacro22907' => 'vma', 'vmacro22908' => 'vma', 'vmacro22909' => 'vma', 'vmacro23108' => 'vma', 'VMungo0540G0540' => 'vmu', 'VMungo0540G2468' => 'vmu', 'VMungo1080G0390' => 'vmu', 'VMungo1080G1165' => 'vmu', 'VMungo1127G0170' => 'vmu', 'VMungo1127G2099' => 'vmu', 'VMungo1215G3013' => 'vmu', 'Zm00001eb013110' => 'zma', 'Zm00001eb084260' => 'zma', 'Zm00001eb096110' => 'zma', 'Zm00001eb217510' => 'zma', 'Zm00001eb322550' => 'zma', 'Zm00001eb390770' => 'zma', 'Zm00001eb397170' => 'zma', 'Zm00001eb404610' => 'zma', 'Zm00001eb421790' => 'zma' ) $gf_id = 'HOM05D000911' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000911' ) $data_identifier = 'HOM05D000911' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 16, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 5, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 6, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 8, 'nnu' => (int) 16, 'oeu' => (int) 8, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 5, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 16, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421790' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000911', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27780' => 'bna', 'A03p35380' => 'bna', 'A04p21160' => 'bna', 'A05p40570' => 'bna', 'A06p26900' => 'bna', 'A08p33230' => 'bna', 'A09p65960' => 'bna', 'A10p18290' => 'bna', 'Aa31LG1G12990' => 'aar', 'Aa31LG1G2980' => 'aar', 'Aa31LG4G14320' => 'aar', 'Aa31LG7G11800' => 'aar', 'Aa31sc36G50' => 'aar', 'Aa31sc36G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3721' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5459' => 'aag', 'Actinidia03028' => 'ach', 'Actinidia03753' => 'ach', 'Actinidia04187' => 'ach', 'Actinidia05509' => 'ach', 'Actinidia24180' => 'ach', 'Actinidia26906' => 'ach', 'Actinidia37097' => 'ach', 'Actinidia38249' => 'ach', 'Ah.01g003470' => 'amhyb', 'Ah.01g004580' => 'amhyb', 'Ah.01g014850' => 'amhyb', 'Ah.01g016830' => 'amhyb', 'Ah.14g088000' => 'amhyb', 'AL1G22980' => 'aly', 'AL3G18990' => 'aly', 'AL4G22440' => 'aly', 'AL4G33180' => 'aly', 'AL5G22920' => 'aly', 'AL6G33660' => 'aly', 'AL8G20720' => 'aly', 'Aqoxy1G00935' => 'aox', 'Aqoxy1G02094' => 'aox', 'Aqoxy2G01239' => 'aox', 'Aqoxy4G01870' => 'aox', 'Aqoxy7G00450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.36ZVTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71EM27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5D6C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH3WRE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3NCM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RIM768' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YB5YRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z36GDV' => 'arhy', 'AT1G08250' => 'ath', 'AT1G11790' => 'ath', 'AT2G27820' => 'ath', 'AT3G07630' => 'ath', 'AT3G44720' => 'ath', 'AT5G22630' => 'ath', 'ATR0693G304' => 'atr', 'ATR0794G109' => 'atr', 'ATR0820G120' => 'atr', 'ATR1159G064' => 'atr', 'Atru.chr10.2239' => 'acertr', 'Atru.chr3.3371' => 'acertr', 'Atru.chr6.3202' => 'acertr', 'AUR62006499' => 'cqu', 'AUR62012718' => 'cqu', 'AUR62021938' => 'cqu', 'AUR62023932' => 'cqu', 'AUR62025034' => 'cqu', 'AUR62025035' => 'cqu', 'AUR62038307' => 'cqu', 'AUR62043466' => 'cqu', 'BcaB02g10748' => 'bca', 'BcaB03g13231' => 'bca', 'BcaB03g14689' => 'bca', 'BcaB05g22716' => 'bca', 'BcaB06g28172' => 'bca', 'BcaB08g36413' => 'bca', 'BcaC01g02186' => 'bca', 'BcaC01g04272' => 'bca', 'BcaC02g08080' => 'bca', 'BcaC02g08227' => 'bca', 'BcaC03g13901' => 'bca', 'BcaC04g19593' => 'bca', 'BcaC04g20874' => 'bca', 'BcaC05g29557' => 'bca', 'BcaC06g35505' => 'bca', 'BcaC07g41954' => 'bca', 'BcaC07g41955' => 'bca', 'BcaC07g41956' => 'bca', 'BcaC07g42519' => 'bca', 'BcaC07g42520' => 'bca', 'BcaC07g42523' => 'bca', 'BcaC07g42524' => 'bca', 'BcaC07g42525' => 'bca', 'BcaC08g47480' => 'bca', 'BcaC08g47481' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00530' => 'bna', 'BolC2t07178H' => 'bol', 'BolC3t16567H' => 'bol', 'BolC4t27234H' => 'bol', 'BolC5t29728H' => 'bol', 'BolC5t34622H' => 'bol', 'BolC6t40321H' => 'bol', 'BolC7t42028H' => 'bol', 'BolC8t49125H' => 'bol', 'BolC8t52538H' => 'bol', 'BolC8t52539H' => 'bol', 'BolC9t56681H' => 'bol', 'BolC9t58266H' => 'bol', 'BolSC21t60294H' => 'bol', 'BraA02t05670Z' => 'bra', 'BraA03t12716Z' => 'bra', 'BraA04t17685Z' => 'bra', 'BraA05t22788Z' => 'bra', 'BraA06t24032Z' => 'bra', 'BraA06t25625Z' => 'bra', 'BraA07t27930Z' => 'bra', 'BraA08t35242Z' => 'bra', 'BraA09t38609Z' => 'bra', 'BraA10t43905Z' => 'bra', 'C02p11060' => 'bna', 'C03p42990' => 'bna', 'C03p67310' => 'bna', 'C04p56990' => 'bna', 'C04p58660' => 'bna', 'C05p09890' => 'bna', 'C05p59680' => 'bna', 'C06p19830' => 'bna', 'C06p53040' => 'bna', 'C07p15230' => 'bna', 'C08p50070' => 'bna', 'C08p50090' => 'bna', 'C09p38330' => 'bna', 'C09p53940' => 'bna', 'CAN.G1014.1' => 'can', 'CAN.G644.30' => 'can', 'CAN.G84.47' => 'can', 'CAN.G919.8' => 'can', 'CANSAT54G0113' => 'cansat', 'CANSAT54G1286' => 'cansat', 'CANSAT64G1020' => 'cansat', 'CARHR008080' => 'chi', 'CARHR008090' => 'chi', 'CARHR012130' => 'chi', 'CARHR038390' => 'chi', 'CARHR082330' => 'chi', 'CARHR120520' => 'chi', 'CARHR151470' => 'chi', 'CARHR190950' => 'chi', 'Carub.0001s0760' => 'cru', 'Carub.0001s1146' => 'cru', 'Carub.0003s0721' => 'cru', 'Carub.0004s0858' => 'cru', 'Carub.0005s1040' => 'cru', 'Carub.0006s2035' => 'cru', 'Carub.0015s0005' => 'cru', 'Ca_01607_v3' => 'car', 'Ca_01677_v3' => 'car', 'Ca_06087_v3' => 'car', 'Ca_19238_v3' => 'car', 'Ca_19373_v3' => 'car', 'Ca_21079_v3' => 'car', 'CBR_g54016' => 'cbr', 'CBR_g54018' => 'cbr', 'CBR_g54020' => 'cbr', 'Cc01_g09780' => 'ccan', 'Cc01_g11680' => 'ccan', 'Cc02_g15610' => 'ccan', 'Cc05_g04350' => 'ccan', 'Cc09_g01580' => 'ccan', 'CDE01G0795' => 'cde', 'CDE02G2024' => 'cde', 'CDE02G2260' => 'cde', 'CDE02G4561' => 'cde', 'CDE05G2733' => 'cde', 'CDE05G3422' => 'cde', 'CDE06G2003' => 'cde', 'CDE08G0576' => 'cde', 'CDE09G0048' => 'cde', 'CDE11G0805' => 'cde', 'Cfa003644' => 'cfa', 'Cfa006290' => 'cfa', 'Cfa010080' => 'cfa', 'Cfa011376' => 'cfa', 'Cfa011576' => 'cfa', 'Cfa011577' => 'cfa', 'Cfa014389' => 'cfa', 'Ciclev10006044m.g' => 'ccl', 'Ciclev10006954m.g' => 'ccl', 'Ciclev10015131m.g' => 'ccl', 'Ciclev10015580m.g' => 'ccl', 'Ciclev10028359m.g' => 'ccl', 'Ciclev10028573m.g' => 'ccl', 'CiPaw.03G159300' => 'cil', 'CiPaw.04G115100' => 'cil', 'CiPaw.09G092800' => 'cil', 'CiPaw.10G071800' => 'cil', 'CiPaw.13G105800' => 'cil', 'CiPaw.13G141000' => 'cil', 'CiPaw.14G103400' => 'cil', 'ClCG01G012700' => 'cla', 'ClCG01G012720' => 'cla', 'ClCG01G021920' => 'cla', 'ClCG02G008870' => 'cla', 'ClCG02G020840' => 'cla', 'ClCG02G021930' => 'cla', 'COL.COLO4_19302' => 'col', 'COL.COLO4_25262' => 'col', 'COL.COLO4_31788' => 'col', 'Cpa.g.c34684' => 'cpa', 'Cpa.g.c36520.1' => 'cpa', 'Cpa.g.c45626' => 'cpa', 'Cpa.g.sc121.17' => 'cpa', 'Cpa.g.sc13.22' => 'cpa', 'Cpa.g.sc87.88' => 'cpa', 'Cre06.g261800' => 'cre', 'CsaV3_1G014500' => 'csa', 'CsaV3_1G014510' => 'csa', 'CsaV3_2G034880' => 'csa', 'CsaV3_6G014760' => 'csa', 'CsaV3_6G021500' => 'csa', 'CsaV3_6G048980' => 'csa', 'CSS0002511' => 'camsi', 'CSS0007556' => 'camsi', 'CSS0008532' => 'camsi', 'CSS0009709' => 'camsi', 'CSS0010486' => 'camsi', 'CSS0016768' => 'camsi', 'CSS0023512' => 'camsi', 'CSS0025341' => 'camsi', 'CSS0027999' => 'camsi', 'CSS0028944' => 'camsi', 'CSS0032292' => 'camsi', 'CSS0032464' => 'camsi', 'CSS0037153' => 'camsi', 'CSS0039256' => 'camsi', 'CSS0048392' => 'camsi', 'CSS0050458' => 'camsi', 'DCAR_004224' => 'dca', 'DCAR_006147' => 'dca', 'DCAR_006465' => 'dca', 'DCAR_008159' => 'dca', 'DCAR_012164' => 'dca', 'DCAR_019764' => 'dca', 'Dinv05418' => 'din', 'Dinv10839' => 'din', 'Dinv12521' => 'din', 'Dinv13900' => 'din', 'Dinv29426' => 'din', 'Duzib150G0263' => 'dzi', 'Duzib168G1178' => 'dzi', 'Duzib168G1924' => 'dzi', 'Duzib170G0299' => 'dzi', 'Duzib170G0813' => 'dzi', 'Duzib235G1128' => 'dzi', 'Duzib248G1060' => 'dzi', 'ECA232G1910' => 'eca', 'ECA233G4621' => 'eca', 'ECA238G1216' => 'eca', 'ECA238G1784' => 'eca', 'ECA248G1242' => 'eca', 'EL10Ac8g20071' => 'bvu', 'EL10Ac9g21086' => 'bvu', 'EL10Ac9g22407' => 'bvu', 'EL10Ac9g22412' => 'bvu', 'Eucgr.A01119' => 'egr', 'Eucgr.E04043' => 'egr', 'Eucgr.J00428' => 'egr', 'Eucgr.J00958' => 'egr', 'FAN11G3091' => 'fan', 'FAN11G3651' => 'fan', 'FAN16G2566' => 'fan', 'FAN21G3155' => 'fan', 'FAN21G3400' => 'fan', 'FAN21G3543' => 'fan', 'FAN25G0234' => 'fan', 'FAN25G1422' => 'fan', 'FAN25G3392' => 'fan', 'FvH4_3g01940' => 'fve', 'FvH4_3g29870' => 'fve', 'FvH4_3g33680' => 'fve', 'Glyma.09G004200' => 'gma', 'Glyma.11G151288' => 'gma', 'Glyma.11G189100' => 'gma', 'Glyma.12G072500' => 'gma', 'Glyma.12G085500' => 'gma', 'Glyma.12G181800' => 'gma', 'Glyma.12G193000' => 'gma', 'Glyma.13G309300' => 'gma', 'Glyma.13G319000' => 'gma', 'Glyma.17G012600' => 'gma', 'Gohir.A06G148600' => 'ghi', 'Gohir.A07G115800' => 'ghi', 'Gohir.A08G003600' => 'ghi', 'Gohir.A09G093300' => 'ghi', 'Gohir.A09G105400' => 'ghi', 'Gohir.A09G105500' => 'ghi', 'Gohir.D06G154600' => 'ghi', 'Gohir.D07G120200' => 'ghi', 'Gohir.D08G013900' => 'ghi', 'Gohir.D09G093100' => 'ghi', 'Gohir.D09G102200' => 'ghi', 'Gohir.D09G102300' => 'ghi', 'Gorai.001G129400' => 'gra', 'Gorai.004G008200' => 'gra', 'Gorai.006G109800' => 'gra', 'Gorai.006G119500' => 'gra', 'Gorai.006G121300' => 'gra', 'Gorai.010G180700' => 'gra', 'GSVIVG01012716001' => 'vvi', 'GSVIVG01025118001' => 'vvi', 'GSVIVG01030439001' => 'vvi', 'GSVIVG01031397001' => 'vvi', 'HanXRQChr01g0004201' => 'han', 'HanXRQChr02g0054941' => 'han', 'HanXRQChr05g0141811' => 'han', 'HanXRQChr07g0197751' => 'han', 'HanXRQChr11g0346691' => 'han', 'HanXRQChr13g0396971' => 'han', 'HanXRQChr14g0432951' => 'han', 'HanXRQChr14g0452001' => 'han', 'HanXRQChr15g0496681' => 'han', 'HanXRQChr17g0557491' => 'han', 'HanXRQChr17g0557501' => 'han', 'Haze_06809' => 'cav', 'Haze_12852' => 'cav', 'Haze_15850' => 'cav', 'Haze_23446' => 'cav', 'Haze_23942' => 'cav', 'Haze_23943' => 'cav', 'Hma1.2p1_0091F.1_g046450' => 'hma', 'Hma1.2p1_0128F.1_g059910' => 'hma', 'Hma1.2p1_0249F.1_g102260' => 'hma', 'Hma1.2p1_0453F.1_g156190' => 'hma', 'Hma1.2p1_0695F.1_g204380' => 'hma', 'Hma1.2p1_0749F.1_g212650' => 'hma', 'Hma1.2p1_2156F.1_g315420' => 'hma', 'Hma1.2p1_2686F.1_g326940' => 'hma', 'HPP92_006428' => 'vpl', 'HPP92_012069' => 'vpl', 'HPP92_014129' => 'vpl', 'HPP92_014133' => 'vpl', 'HPP92_017315' => 'vpl', 'HPP92_026445' => 'vpl', 'HPP92_026446' => 'vpl', 'Hund00774' => 'sun', 'Hund07682' => 'sun', 'Hund21413' => 'sun', 'Hund23462' => 'sun', 'Hund23463' => 'sun', 'Lalb_Chr03g0027911' => 'lal', 'Lalb_Chr13g0304271' => 'lal', 'Lalb_Chr19g0137471' => 'lal', 'Lalb_Chr22g0350651' => 'lal', 'Lalb_Chr24g0395151' => 'lal', 'Lj1A1231T40' => 'lonja', 'Lj1A221T48' => 'lonja', 'Lj1C924T12' => 'lonja', 'Lj2C993G6' => 'lonja', 'Lj3g0005790' => 'lja', 'Lj3g0015432' => 'lja', 'Lj3g0017722' => 'lja', 'Lj3g0018497' => 'lja', 'Lj4g0025071' => 'lja', 'Lsat_1_v5_gn_1_129680' => 'lsa', 'Lsat_1_v5_gn_2_25321' => 'lsa', 'Lsat_1_v5_gn_2_95461' => 'lsa', 'Lsat_1_v5_gn_4_159620' => 'lsa', 'Lsat_1_v5_gn_6_41301' => 'lsa', 'Lsat_1_v5_gn_6_74660' => 'lsa', 'Lsat_1_v5_gn_7_11520' => 'lsa', 'Lsat_1_v5_gn_9_67680' => 'lsa', 'Manes.04G008300' => 'mes', 'Manes.04G008400' => 'mes', 'Manes.04G026500' => 'mes', 'Manes.10G135300' => 'mes', 'Manes.11G157300' => 'mes', 'Manes.12G074000' => 'mes', 'Manes.16G006200' => 'mes', 'Manes.17G026400' => 'mes', 'Mapoly0024s0086' => 'mpo', 'Mapoly0024s0087' => 'mpo', 'Mapoly0071s0057' => 'mpo', 'Mapoly0204s0012' => 'mpo', 'MBI04_g37681_MAGBIO' => 'mbi', 'MBI05_g17779_MAGBIO' => 'mbi', 'MBI12_g31184_MAGBIO' => 'mbi', 'MBI17_g11083_MAGBIO' => 'mbi', 'MBI18_g03883_MAGBIO' => 'mbi', 'MBI18_g28940_MAGBIO' => 'mbi', 'MCO01G690' => 'mco', 'MD03G1109900' => 'mdo', 'MD03G1134800' => 'mdo', 'MD05G1348000' => 'mdo', 'MD10G1322400' => 'mdo', 'MD11G1123300' => 'mdo', 'MD11G1157600' => 'mdo', 'Medtr2g084875' => 'mtr', 'Medtr2g088130' => 'mtr', 'Medtr4g055310' => 'mtr', 'Medtr4g061070' => 'mtr', 'Medtr4g132250' => 'mtr', 'MELO3C004795.2' => 'cme', 'MELO3C004797.2' => 'cme', 'MELO3C007396.2' => 'cme', 'MELO3C019277.2' => 'cme', 'MELO3C021449.2' => 'cme', 'MELO3C025736.2' => 'cme', 'Migut.D02175' => 'egut', 'Migut.H01573' => 'egut', 'Migut.M01327' => 'egut', 'Migut.N02513' => 'egut', 'MSTRG.14638' => 'ama', 'MSTRG.18632' => 'ama', 'MSTRG.7203' => 'ama', 'Nitab4.5_0000533g0140' => 'nta', 'Nitab4.5_0000888g0150' => 'nta', 'Nitab4.5_0001453g0040' => 'nta', 'Nitab4.5_0002827g0090' => 'nta', 'Nitab4.5_0003082g0040' => 'nta', 'Nitab4.5_0007799g0040' => 'nta', 'Nitab4.5_0008983g0010' => 'nta', 'Nitab4.5_0009017g0020' => 'nta', 'Nn1g02132' => 'nnu', 'Nn1g03492' => 'nnu', 'Nn1g03493' => 'nnu', 'Nn1g03494' => 'nnu', 'Nn1g07164' => 'nnu', 'Nn1g07291' => 'nnu', 'Nn2g10655' => 'nnu', 'Nn2g11652' => 'nnu', 'Nn2g14008' => 'nnu', 'Nn3g17476' => 'nnu', 'Nn3g17477' => 'nnu', 'Nn4g22370' => 'nnu', 'Nn4g25255' => 'nnu', 'Nn5g27755' => 'nnu', 'Nn6g34260' => 'nnu', 'Nn6g35041' => 'nnu', 'Oeu005924.1' => 'oeu', 'Oeu008383.1' => 'oeu', 'Oeu014928.1' => 'oeu', 'Oeu019889.1' => 'oeu', 'Oeu022271.1' => 'oeu', 'Oeu025271.1' => 'oeu', 'Oeu036302.1' => 'oeu', 'Oeu044100.1' => 'oeu', 'Os01g0528300' => 'osa', 'Os03g0286200' => 'osa', 'Os04g0406600' => 'osa', 'Os07g0512000' => 'osa', 'Os07g0694600' => 'osa', 'Os08g0411000' => 'osa', 'Os09g0565700' => 'osa', 'Os09g0566050' => 'osa', 'Os10g0523700' => 'osa', 'Peaxi162Scf00002g00514' => 'pax', 'Peaxi162Scf00047g01817' => 'pax', 'Peaxi162Scf00114g00001' => 'pax', 'Peaxi162Scf00147g00613' => 'pax', 'Peaxi162Scf00389g00425' => 'pax', 'PGR042G1139' => 'pgr', 'PGR042G3273' => 'pgr', 'PGR102G2180' => 'pgr', 'PGR119G0234' => 'pgr', 'PGR119G0668' => 'pgr', 'PGSC0003DMG400007122' => 'stu', 'PGSC0003DMG400016478' => 'stu', 'PGSC0003DMG400025374' => 'stu', 'PGSC0003DMG400026536' => 'stu', 'Phvul.003G079600' => 'pvu', 'Phvul.005G115600' => 'pvu', 'Phvul.005G127100' => 'pvu', 'Phvul.006G149500' => 'pvu', 'Phvul.006G149600' => 'pvu', 'Phvul.011G071800' => 'pvu', 'Phvul.011G090400' => 'pvu', 'Potri.004G013400' => 'ptr', 'Potri.004G188100' => 'ptr', 'Potri.008G195500' => 'ptr', 'Potri.009G148800' => 'ptr', 'Potri.011G004700' => 'ptr', 'Pp3c17_22810' => 'ppa', 'Pp3c18_4480' => 'ppa', 'Pp3c19_13030' => 'ppa', 'Pp3c1_33620' => 'ppa', 'Pp3c2_9380' => 'ppa', 'PRCOL_00001023' => 'pco', 'Prupe.3G216300' => 'ppe', 'Prupe.4G019500' => 'ppe', 'Prupe.6G092500' => 'ppe', 'Prupe.6G119200' => 'ppe', 'Psat0s1945g0080' => 'psa', 'Psat0s4167g0040' => 'psa', 'Psat1g185800' => 'psa', 'Psat4g006440' => 'psa', 'Psat4g006480' => 'psa', 'Psat4g168120' => 'psa', 'Psat5g255680' => 'psa', 'Psat5g261760' => 'psa', 'Psat7g222120' => 'psa', 'PSO063G7252' => 'pso', 'PSO170G4778' => 'pso', 'PSO210G2249' => 'pso', 'PSO339G2411' => 'pso', 'PSO339G2457' => 'pso', 'PSO339G2854' => 'pso', 'PSO339G4288' => 'pso', 'PSO339G4615' => 'pso', 'PSO384G2796' => 'pso', 'PSO384G2940' => 'pso', 'PSO384G4227' => 'pso', 'PSO478G1425' => 'pso', 'PSO541G3863' => 'pso', 'PSO675G0507' => 'pso', 'PSO782G0338' => 'pso', 'PSO832G0644' => 'pso', 'QL01p013664' => 'qlo', 'QL01p036598' => 'qlo', 'QL05p072984' => 'qlo', 'QL08p005768' => 'qlo', 'QL08p032743' => 'qlo', 'QL93p0073_0439' => 'qlo', 'QL93p0073_0444' => 'qlo', 'RcHm_v2.0_Chr5g0002851' => 'rch', 'RcHm_v2.0_Chr5g0055201' => 'rch', 'RcHm_v2.0_Chr5g0061191' => 'rch', 'RcHm_v2.0_Chr7g0203231' => 'rch', 'Rhsim01G0208100' => 'rsi', 'Rhsim01G0208200' => 'rsi', 'Rhsim02G0106500' => 'rsi', 'Rhsim03G0107900' => 'rsi', 'Rhsim06G0163400' => 'rsi', 'Rhsim13G0105200' => 'rsi', 'Sabra04G0006300' => 'sbr', 'Sabra04G0127000' => 'sbr', 'Sabra08G0148700' => 'sbr', 'Sabra09G0117400' => 'sbr', 'SalBow1G3326' => 'sbo', 'SalBow3G3228' => 'sbo', 'SalBow6G1634' => 'sbo', 'SalBow6G3603' => 'sbo', 'SalBow6G5266' => 'sbo', 'SalBow7G2265' => 'sbo', 'SalBow8G0850' => 'sbo', 'SalBow8G2592' => 'sbo', 'Sc05g0009240' => 'sci', 'Sc12g0002300' => 'sci', 'Sc21g0000100' => 'sci', 'Sc21g0004720' => 'sci', 'Sed0002949' => 'sed', 'Sed0004114' => 'sed', 'Sed0004306' => 'sed', 'Sed0006172' => 'sed', 'Sed0008413' => 'sed', 'Sed0013809' => 'sed', 'Sed0019556' => 'sed', 'SEGI_03570' => 'sgi', 'SEGI_07859' => 'sgi', 'SEGI_15042' => 'sgi', 'SEGI_16263' => 'sgi', 'SEGI_16552' => 'sgi', 'SEGI_24331' => 'sgi', 'SEGI_27316' => 'sgi', 'SEGI_29521' => 'sgi', 'SEGI_41342' => 'sgi', 'SGA_v2.0_scaffold27G11617' => 'sas', 'SGA_v2.0_scaffold316G48428' => 'sas', 'SGA_v2.0_scaffold49G18261' => 'sas', 'SGA_v2.0_scaffold7G03831' => 'sas', 'SGA_v2.0_scaffold93G28359' => 'sas', 'SHI02210' => 'shi', 'SHI06028' => 'shi', 'SHI06321' => 'shi', 'SMO111G0012' => 'smo', 'SMO228G0080' => 'smo', 'SMO356G0756' => 'smo', 'Solyc02g080620.3' => 'sly', 'Solyc06g074530.1' => 'sly', 'Solyc11g066890.1' => 'sly', 'Solyc11g072520.3' => 'sly', 'Sopen02g025330' => 'spe', 'Sopen06g031000' => 'spe', 'Sopen09g008240' => 'spe', 'Sopen09g025210' => 'spe', 'Sopen11g026600' => 'spe', 'Sopen11g030170' => 'spe', 'Sp1g10420' => 'spa', 'Sp3g06570' => 'spa', 'Sp4g10660' => 'spa', 'Sp5g16460' => 'spa', 'Sp6g22710' => 'spa', 'TAR365G0112' => 'tar', 'TAR369G0717' => 'tar', 'TAR374G0976' => 'tar', 'TAR623G1128' => 'tar', 'TAR626G1937' => 'tar', 'TAR627G0123' => 'tar', 'TAR628G0305' => 'tar', 'TAR636G1176' => 'tar', 'TAR636G2442' => 'tar', 'THA.LOC104800556' => 'tha', 'THA.LOC104809501' => 'tha', 'THA.LOC104815126' => 'tha', 'THA.LOC104815732' => 'tha', 'THA.LOC104823528' => 'tha', 'Thecc.02G365600' => 'tca', 'Thecc.06G222300' => 'tca', 'Thecc.09G261800' => 'tca', 'Thecc.09G291400' => 'tca', 'Thhalv10003028m.g' => 'esa', 'Thhalv10007886m.g' => 'esa', 'Thhalv10016085m.g' => 'esa', 'Thhalv10016681m.g' => 'esa', 'Thhalv10020951m.g' => 'esa', 'TPR.G15598' => 'tpr', 'TPR.G29305' => 'tpr', 'TPR.G32395' => 'tpr', 'TPR.G36998' => 'tpr', 'TPR.G4227' => 'tpr', 'TWI18G1433' => 'twi', 'TWI31G0755' => 'twi', 'TWI38G0912' => 'twi', 'TWI75G1097' => 'twi', 'TWI75G1619' => 'twi', 'TWI79G1336' => 'twi', 'unitig_0.g943' => 'ugi', 'unitig_0.g944' => 'ugi', 'unitig_22.g6646' => 'ugi', 'unitig_37.g12681' => 'ugi', 'unitig_8.g3290' => 'ugi', 'vmacro03278' => 'vma', 'vmacro12197' => 'vma', 'vmacro14478' => 'vma', 'vmacro15787' => 'vma', 'vmacro15789' => 'vma', 'vmacro15790' => 'vma', 'vmacro15806' => 'vma', 'vmacro22907' => 'vma', 'vmacro22908' => 'vma', 'vmacro22909' => 'vma', 'vmacro23108' => 'vma', 'VMungo0540G0540' => 'vmu', 'VMungo0540G2468' => 'vmu', 'VMungo1080G0390' => 'vmu', 'VMungo1080G1165' => 'vmu', 'VMungo1127G0170' => 'vmu', 'VMungo1127G2099' => 'vmu', 'VMungo1215G3013' => 'vmu', 'Zm00001eb013110' => 'zma', 'Zm00001eb084260' => 'zma', 'Zm00001eb096110' => 'zma', 'Zm00001eb217510' => 'zma', 'Zm00001eb322550' => 'zma', 'Zm00001eb390770' => 'zma', 'Zm00001eb397170' => 'zma', 'Zm00001eb404610' => 'zma', 'Zm00001eb421790' => 'zma' ), 'gf_id' => 'HOM05D000911', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000911' ), 'data_identifier' => 'HOM05D000911', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000911', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27780' => 'bna', 'A03p35380' => 'bna', 'A04p21160' => 'bna', 'A05p40570' => 'bna', 'A06p26900' => 'bna', 'A08p33230' => 'bna', 'A09p65960' => 'bna', 'A10p18290' => 'bna', 'Aa31LG1G12990' => 'aar', 'Aa31LG1G2980' => 'aar', 'Aa31LG4G14320' => 'aar', 'Aa31LG7G11800' => 'aar', 'Aa31sc36G50' => 'aar', 'Aa31sc36G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3721' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5459' => 'aag', 'Actinidia03028' => 'ach', 'Actinidia03753' => 'ach', 'Actinidia04187' => 'ach', 'Actinidia05509' => 'ach', 'Actinidia24180' => 'ach', 'Actinidia26906' => 'ach', 'Actinidia37097' => 'ach', 'Actinidia38249' => 'ach', 'Ah.01g003470' => 'amhyb', 'Ah.01g004580' => 'amhyb', 'Ah.01g014850' => 'amhyb', 'Ah.01g016830' => 'amhyb', 'Ah.14g088000' => 'amhyb', 'AL1G22980' => 'aly', 'AL3G18990' => 'aly', 'AL4G22440' => 'aly', 'AL4G33180' => 'aly', 'AL5G22920' => 'aly', 'AL6G33660' => 'aly', 'AL8G20720' => 'aly', 'Aqoxy1G00935' => 'aox', 'Aqoxy1G02094' => 'aox', 'Aqoxy2G01239' => 'aox', 'Aqoxy4G01870' => 'aox', 'Aqoxy7G00450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.36ZVTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71EM27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5D6C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH3WRE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3NCM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RIM768' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YB5YRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z36GDV' => 'arhy', 'AT1G08250' => 'ath', 'AT1G11790' => 'ath', 'AT2G27820' => 'ath', 'AT3G07630' => 'ath', 'AT3G44720' => 'ath', 'AT5G22630' => 'ath', 'ATR0693G304' => 'atr', 'ATR0794G109' => 'atr', 'ATR0820G120' => 'atr', 'ATR1159G064' => 'atr', 'Atru.chr10.2239' => 'acertr', 'Atru.chr3.3371' => 'acertr', 'Atru.chr6.3202' => 'acertr', 'AUR62006499' => 'cqu', 'AUR62012718' => 'cqu', 'AUR62021938' => 'cqu', 'AUR62023932' => 'cqu', 'AUR62025034' => 'cqu', 'AUR62025035' => 'cqu', 'AUR62038307' => 'cqu', 'AUR62043466' => 'cqu', 'BcaB02g10748' => 'bca', 'BcaB03g13231' => 'bca', 'BcaB03g14689' => 'bca', 'BcaB05g22716' => 'bca', 'BcaB06g28172' => 'bca', 'BcaB08g36413' => 'bca', 'BcaC01g02186' => 'bca', 'BcaC01g04272' => 'bca', 'BcaC02g08080' => 'bca', 'BcaC02g08227' => 'bca', 'BcaC03g13901' => 'bca', 'BcaC04g19593' => 'bca', 'BcaC04g20874' => 'bca', 'BcaC05g29557' => 'bca', 'BcaC06g35505' => 'bca', 'BcaC07g41954' => 'bca', 'BcaC07g41955' => 'bca', 'BcaC07g41956' => 'bca', 'BcaC07g42519' => 'bca', 'BcaC07g42520' => 'bca', 'BcaC07g42523' => 'bca', 'BcaC07g42524' => 'bca', 'BcaC07g42525' => 'bca', 'BcaC08g47480' => 'bca', 'BcaC08g47481' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00530' => 'bna', 'BolC2t07178H' => 'bol', 'BolC3t16567H' => 'bol', 'BolC4t27234H' => 'bol', 'BolC5t29728H' => 'bol', 'BolC5t34622H' => 'bol', 'BolC6t40321H' => 'bol', 'BolC7t42028H' => 'bol', 'BolC8t49125H' => 'bol', 'BolC8t52538H' => 'bol', 'BolC8t52539H' => 'bol', 'BolC9t56681H' => 'bol', 'BolC9t58266H' => 'bol', 'BolSC21t60294H' => 'bol', 'BraA02t05670Z' => 'bra', 'BraA03t12716Z' => 'bra', 'BraA04t17685Z' => 'bra', 'BraA05t22788Z' => 'bra', 'BraA06t24032Z' => 'bra', 'BraA06t25625Z' => 'bra', 'BraA07t27930Z' => 'bra', 'BraA08t35242Z' => 'bra', 'BraA09t38609Z' => 'bra', 'BraA10t43905Z' => 'bra', 'C02p11060' => 'bna', 'C03p42990' => 'bna', 'C03p67310' => 'bna', 'C04p56990' => 'bna', 'C04p58660' => 'bna', 'C05p09890' => 'bna', 'C05p59680' => 'bna', 'C06p19830' => 'bna', 'C06p53040' => 'bna', 'C07p15230' => 'bna', 'C08p50070' => 'bna', 'C08p50090' => 'bna', 'C09p38330' => 'bna', 'C09p53940' => 'bna', 'CAN.G1014.1' => 'can', 'CAN.G644.30' => 'can', 'CAN.G84.47' => 'can', 'CAN.G919.8' => 'can', 'CANSAT54G0113' => 'cansat', 'CANSAT54G1286' => 'cansat', 'CANSAT64G1020' => 'cansat', 'CARHR008080' => 'chi', 'CARHR008090' => 'chi', 'CARHR012130' => 'chi', 'CARHR038390' => 'chi', 'CARHR082330' => 'chi', 'CARHR120520' => 'chi', 'CARHR151470' => 'chi', 'CARHR190950' => 'chi', 'Carub.0001s0760' => 'cru', 'Carub.0001s1146' => 'cru', 'Carub.0003s0721' => 'cru', 'Carub.0004s0858' => 'cru', 'Carub.0005s1040' => 'cru', 'Carub.0006s2035' => 'cru', 'Carub.0015s0005' => 'cru', 'Ca_01607_v3' => 'car', 'Ca_01677_v3' => 'car', 'Ca_06087_v3' => 'car', 'Ca_19238_v3' => 'car', 'Ca_19373_v3' => 'car', 'Ca_21079_v3' => 'car', 'CBR_g54016' => 'cbr', 'CBR_g54018' => 'cbr', 'CBR_g54020' => 'cbr', 'Cc01_g09780' => 'ccan', 'Cc01_g11680' => 'ccan', 'Cc02_g15610' => 'ccan', 'Cc05_g04350' => 'ccan', 'Cc09_g01580' => 'ccan', 'CDE01G0795' => 'cde', 'CDE02G2024' => 'cde', 'CDE02G2260' => 'cde', 'CDE02G4561' => 'cde', 'CDE05G2733' => 'cde', 'CDE05G3422' => 'cde', 'CDE06G2003' => 'cde', 'CDE08G0576' => 'cde', 'CDE09G0048' => 'cde', 'CDE11G0805' => 'cde', 'Cfa003644' => 'cfa', 'Cfa006290' => 'cfa', 'Cfa010080' => 'cfa', 'Cfa011376' => 'cfa', 'Cfa011576' => 'cfa', 'Cfa011577' => 'cfa', 'Cfa014389' => 'cfa', 'Ciclev10006044m.g' => 'ccl', 'Ciclev10006954m.g' => 'ccl', 'Ciclev10015131m.g' => 'ccl', 'Ciclev10015580m.g' => 'ccl', 'Ciclev10028359m.g' => 'ccl', 'Ciclev10028573m.g' => 'ccl', 'CiPaw.03G159300' => 'cil', 'CiPaw.04G115100' => 'cil', 'CiPaw.09G092800' => 'cil', 'CiPaw.10G071800' => 'cil', 'CiPaw.13G105800' => 'cil', 'CiPaw.13G141000' => 'cil', 'CiPaw.14G103400' => 'cil', 'ClCG01G012700' => 'cla', 'ClCG01G012720' => 'cla', 'ClCG01G021920' => 'cla', 'ClCG02G008870' => 'cla', 'ClCG02G020840' => 'cla', 'ClCG02G021930' => 'cla', 'COL.COLO4_19302' => 'col', 'COL.COLO4_25262' => 'col', 'COL.COLO4_31788' => 'col', 'Cpa.g.c34684' => 'cpa', 'Cpa.g.c36520.1' => 'cpa', 'Cpa.g.c45626' => 'cpa', 'Cpa.g.sc121.17' => 'cpa', 'Cpa.g.sc13.22' => 'cpa', 'Cpa.g.sc87.88' => 'cpa', 'Cre06.g261800' => 'cre', 'CsaV3_1G014500' => 'csa', 'CsaV3_1G014510' => 'csa', 'CsaV3_2G034880' => 'csa', 'CsaV3_6G014760' => 'csa', 'CsaV3_6G021500' => 'csa', 'CsaV3_6G048980' => 'csa', 'CSS0002511' => 'camsi', 'CSS0007556' => 'camsi', 'CSS0008532' => 'camsi', 'CSS0009709' => 'camsi', 'CSS0010486' => 'camsi', 'CSS0016768' => 'camsi', 'CSS0023512' => 'camsi', 'CSS0025341' => 'camsi', 'CSS0027999' => 'camsi', 'CSS0028944' => 'camsi', 'CSS0032292' => 'camsi', 'CSS0032464' => 'camsi', 'CSS0037153' => 'camsi', 'CSS0039256' => 'camsi', 'CSS0048392' => 'camsi', 'CSS0050458' => 'camsi', 'DCAR_004224' => 'dca', 'DCAR_006147' => 'dca', 'DCAR_006465' => 'dca', 'DCAR_008159' => 'dca', 'DCAR_012164' => 'dca', 'DCAR_019764' => 'dca', 'Dinv05418' => 'din', 'Dinv10839' => 'din', 'Dinv12521' => 'din', 'Dinv13900' => 'din', 'Dinv29426' => 'din', 'Duzib150G0263' => 'dzi', 'Duzib168G1178' => 'dzi', 'Duzib168G1924' => 'dzi', 'Duzib170G0299' => 'dzi', 'Duzib170G0813' => 'dzi', 'Duzib235G1128' => 'dzi', 'Duzib248G1060' => 'dzi', 'ECA232G1910' => 'eca', 'ECA233G4621' => 'eca', 'ECA238G1216' => 'eca', 'ECA238G1784' => 'eca', 'ECA248G1242' => 'eca', 'EL10Ac8g20071' => 'bvu', 'EL10Ac9g21086' => 'bvu', 'EL10Ac9g22407' => 'bvu', 'EL10Ac9g22412' => 'bvu', 'Eucgr.A01119' => 'egr', 'Eucgr.E04043' => 'egr', 'Eucgr.J00428' => 'egr', 'Eucgr.J00958' => 'egr', 'FAN11G3091' => 'fan', 'FAN11G3651' => 'fan', 'FAN16G2566' => 'fan', 'FAN21G3155' => 'fan', 'FAN21G3400' => 'fan', 'FAN21G3543' => 'fan', 'FAN25G0234' => 'fan', 'FAN25G1422' => 'fan', 'FAN25G3392' => 'fan', 'FvH4_3g01940' => 'fve', 'FvH4_3g29870' => 'fve', 'FvH4_3g33680' => 'fve', 'Glyma.09G004200' => 'gma', 'Glyma.11G151288' => 'gma', 'Glyma.11G189100' => 'gma', 'Glyma.12G072500' => 'gma', 'Glyma.12G085500' => 'gma', 'Glyma.12G181800' => 'gma', 'Glyma.12G193000' => 'gma', 'Glyma.13G309300' => 'gma', 'Glyma.13G319000' => 'gma', 'Glyma.17G012600' => 'gma', 'Gohir.A06G148600' => 'ghi', 'Gohir.A07G115800' => 'ghi', 'Gohir.A08G003600' => 'ghi', 'Gohir.A09G093300' => 'ghi', 'Gohir.A09G105400' => 'ghi', 'Gohir.A09G105500' => 'ghi', 'Gohir.D06G154600' => 'ghi', 'Gohir.D07G120200' => 'ghi', 'Gohir.D08G013900' => 'ghi', 'Gohir.D09G093100' => 'ghi', 'Gohir.D09G102200' => 'ghi', 'Gohir.D09G102300' => 'ghi', 'Gorai.001G129400' => 'gra', 'Gorai.004G008200' => 'gra', 'Gorai.006G109800' => 'gra', 'Gorai.006G119500' => 'gra', 'Gorai.006G121300' => 'gra', 'Gorai.010G180700' => 'gra', 'GSVIVG01012716001' => 'vvi', 'GSVIVG01025118001' => 'vvi', 'GSVIVG01030439001' => 'vvi', 'GSVIVG01031397001' => 'vvi', 'HanXRQChr01g0004201' => 'han', 'HanXRQChr02g0054941' => 'han', 'HanXRQChr05g0141811' => 'han', 'HanXRQChr07g0197751' => 'han', 'HanXRQChr11g0346691' => 'han', 'HanXRQChr13g0396971' => 'han', 'HanXRQChr14g0432951' => 'han', 'HanXRQChr14g0452001' => 'han', 'HanXRQChr15g0496681' => 'han', 'HanXRQChr17g0557491' => 'han', 'HanXRQChr17g0557501' => 'han', 'Haze_06809' => 'cav', 'Haze_12852' => 'cav', 'Haze_15850' => 'cav', 'Haze_23446' => 'cav', 'Haze_23942' => 'cav', 'Haze_23943' => 'cav', 'Hma1.2p1_0091F.1_g046450' => 'hma', 'Hma1.2p1_0128F.1_g059910' => 'hma', 'Hma1.2p1_0249F.1_g102260' => 'hma', 'Hma1.2p1_0453F.1_g156190' => 'hma', 'Hma1.2p1_0695F.1_g204380' => 'hma', 'Hma1.2p1_0749F.1_g212650' => 'hma', 'Hma1.2p1_2156F.1_g315420' => 'hma', 'Hma1.2p1_2686F.1_g326940' => 'hma', 'HPP92_006428' => 'vpl', 'HPP92_012069' => 'vpl', 'HPP92_014129' => 'vpl', 'HPP92_014133' => 'vpl', 'HPP92_017315' => 'vpl', 'HPP92_026445' => 'vpl', 'HPP92_026446' => 'vpl', 'Hund00774' => 'sun', 'Hund07682' => 'sun', 'Hund21413' => 'sun', 'Hund23462' => 'sun', 'Hund23463' => 'sun', 'Lalb_Chr03g0027911' => 'lal', 'Lalb_Chr13g0304271' => 'lal', 'Lalb_Chr19g0137471' => 'lal', 'Lalb_Chr22g0350651' => 'lal', 'Lalb_Chr24g0395151' => 'lal', 'Lj1A1231T40' => 'lonja', 'Lj1A221T48' => 'lonja', 'Lj1C924T12' => 'lonja', 'Lj2C993G6' => 'lonja', 'Lj3g0005790' => 'lja', 'Lj3g0015432' => 'lja', 'Lj3g0017722' => 'lja', 'Lj3g0018497' => 'lja', 'Lj4g0025071' => 'lja', 'Lsat_1_v5_gn_1_129680' => 'lsa', 'Lsat_1_v5_gn_2_25321' => 'lsa', 'Lsat_1_v5_gn_2_95461' => 'lsa', 'Lsat_1_v5_gn_4_159620' => 'lsa', 'Lsat_1_v5_gn_6_41301' => 'lsa', 'Lsat_1_v5_gn_6_74660' => 'lsa', 'Lsat_1_v5_gn_7_11520' => 'lsa', 'Lsat_1_v5_gn_9_67680' => 'lsa', 'Manes.04G008300' => 'mes', 'Manes.04G008400' => 'mes', 'Manes.04G026500' => 'mes', 'Manes.10G135300' => 'mes', 'Manes.11G157300' => 'mes', 'Manes.12G074000' => 'mes', 'Manes.16G006200' => 'mes', 'Manes.17G026400' => 'mes', 'Mapoly0024s0086' => 'mpo', 'Mapoly0024s0087' => 'mpo', 'Mapoly0071s0057' => 'mpo', 'Mapoly0204s0012' => 'mpo', 'MBI04_g37681_MAGBIO' => 'mbi', 'MBI05_g17779_MAGBIO' => 'mbi', 'MBI12_g31184_MAGBIO' => 'mbi', 'MBI17_g11083_MAGBIO' => 'mbi', 'MBI18_g03883_MAGBIO' => 'mbi', 'MBI18_g28940_MAGBIO' => 'mbi', 'MCO01G690' => 'mco', 'MD03G1109900' => 'mdo', 'MD03G1134800' => 'mdo', 'MD05G1348000' => 'mdo', 'MD10G1322400' => 'mdo', 'MD11G1123300' => 'mdo', 'MD11G1157600' => 'mdo', 'Medtr2g084875' => 'mtr', 'Medtr2g088130' => 'mtr', 'Medtr4g055310' => 'mtr', 'Medtr4g061070' => 'mtr', 'Medtr4g132250' => 'mtr', 'MELO3C004795.2' => 'cme', 'MELO3C004797.2' => 'cme', 'MELO3C007396.2' => 'cme', 'MELO3C019277.2' => 'cme', 'MELO3C021449.2' => 'cme', 'MELO3C025736.2' => 'cme', 'Migut.D02175' => 'egut', 'Migut.H01573' => 'egut', 'Migut.M01327' => 'egut', 'Migut.N02513' => 'egut', 'MSTRG.14638' => 'ama', 'MSTRG.18632' => 'ama', 'MSTRG.7203' => 'ama', 'Nitab4.5_0000533g0140' => 'nta', 'Nitab4.5_0000888g0150' => 'nta', 'Nitab4.5_0001453g0040' => 'nta', 'Nitab4.5_0002827g0090' => 'nta', 'Nitab4.5_0003082g0040' => 'nta', 'Nitab4.5_0007799g0040' => 'nta', 'Nitab4.5_0008983g0010' => 'nta', 'Nitab4.5_0009017g0020' => 'nta', 'Nn1g02132' => 'nnu', 'Nn1g03492' => 'nnu', 'Nn1g03493' => 'nnu', 'Nn1g03494' => 'nnu', 'Nn1g07164' => 'nnu', 'Nn1g07291' => 'nnu', 'Nn2g10655' => 'nnu', 'Nn2g11652' => 'nnu', 'Nn2g14008' => 'nnu', 'Nn3g17476' => 'nnu', 'Nn3g17477' => 'nnu', 'Nn4g22370' => 'nnu', 'Nn4g25255' => 'nnu', 'Nn5g27755' => 'nnu', 'Nn6g34260' => 'nnu', 'Nn6g35041' => 'nnu', 'Oeu005924.1' => 'oeu', 'Oeu008383.1' => 'oeu', 'Oeu014928.1' => 'oeu', 'Oeu019889.1' => 'oeu', 'Oeu022271.1' => 'oeu', 'Oeu025271.1' => 'oeu', 'Oeu036302.1' => 'oeu', 'Oeu044100.1' => 'oeu', 'Os01g0528300' => 'osa', 'Os03g0286200' => 'osa', 'Os04g0406600' => 'osa', 'Os07g0512000' => 'osa', 'Os07g0694600' => 'osa', 'Os08g0411000' => 'osa', 'Os09g0565700' => 'osa', 'Os09g0566050' => 'osa', 'Os10g0523700' => 'osa', 'Peaxi162Scf00002g00514' => 'pax', 'Peaxi162Scf00047g01817' => 'pax', 'Peaxi162Scf00114g00001' => 'pax', 'Peaxi162Scf00147g00613' => 'pax', 'Peaxi162Scf00389g00425' => 'pax', 'PGR042G1139' => 'pgr', 'PGR042G3273' => 'pgr', 'PGR102G2180' => 'pgr', 'PGR119G0234' => 'pgr', 'PGR119G0668' => 'pgr', 'PGSC0003DMG400007122' => 'stu', 'PGSC0003DMG400016478' => 'stu', 'PGSC0003DMG400025374' => 'stu', 'PGSC0003DMG400026536' => 'stu', 'Phvul.003G079600' => 'pvu', 'Phvul.005G115600' => 'pvu', 'Phvul.005G127100' => 'pvu', 'Phvul.006G149500' => 'pvu', 'Phvul.006G149600' => 'pvu', 'Phvul.011G071800' => 'pvu', 'Phvul.011G090400' => 'pvu', 'Potri.004G013400' => 'ptr', 'Potri.004G188100' => 'ptr', 'Potri.008G195500' => 'ptr', 'Potri.009G148800' => 'ptr', 'Potri.011G004700' => 'ptr', 'Pp3c17_22810' => 'ppa', 'Pp3c18_4480' => 'ppa', 'Pp3c19_13030' => 'ppa', 'Pp3c1_33620' => 'ppa', 'Pp3c2_9380' => 'ppa', 'PRCOL_00001023' => 'pco', 'Prupe.3G216300' => 'ppe', 'Prupe.4G019500' => 'ppe', 'Prupe.6G092500' => 'ppe', 'Prupe.6G119200' => 'ppe', 'Psat0s1945g0080' => 'psa', 'Psat0s4167g0040' => 'psa', 'Psat1g185800' => 'psa', 'Psat4g006440' => 'psa', 'Psat4g006480' => 'psa', 'Psat4g168120' => 'psa', 'Psat5g255680' => 'psa', 'Psat5g261760' => 'psa', 'Psat7g222120' => 'psa', 'PSO063G7252' => 'pso', 'PSO170G4778' => 'pso', 'PSO210G2249' => 'pso', 'PSO339G2411' => 'pso', 'PSO339G2457' => 'pso', 'PSO339G2854' => 'pso', 'PSO339G4288' => 'pso', 'PSO339G4615' => 'pso', 'PSO384G2796' => 'pso', 'PSO384G2940' => 'pso', 'PSO384G4227' => 'pso', 'PSO478G1425' => 'pso', 'PSO541G3863' => 'pso', 'PSO675G0507' => 'pso', 'PSO782G0338' => 'pso', 'PSO832G0644' => 'pso', 'QL01p013664' => 'qlo', 'QL01p036598' => 'qlo', 'QL05p072984' => 'qlo', 'QL08p005768' => 'qlo', 'QL08p032743' => 'qlo', 'QL93p0073_0439' => 'qlo', 'QL93p0073_0444' => 'qlo', 'RcHm_v2.0_Chr5g0002851' => 'rch', 'RcHm_v2.0_Chr5g0055201' => 'rch', 'RcHm_v2.0_Chr5g0061191' => 'rch', 'RcHm_v2.0_Chr7g0203231' => 'rch', 'Rhsim01G0208100' => 'rsi', 'Rhsim01G0208200' => 'rsi', 'Rhsim02G0106500' => 'rsi', 'Rhsim03G0107900' => 'rsi', 'Rhsim06G0163400' => 'rsi', 'Rhsim13G0105200' => 'rsi', 'Sabra04G0006300' => 'sbr', 'Sabra04G0127000' => 'sbr', 'Sabra08G0148700' => 'sbr', 'Sabra09G0117400' => 'sbr', 'SalBow1G3326' => 'sbo', 'SalBow3G3228' => 'sbo', 'SalBow6G1634' => 'sbo', 'SalBow6G3603' => 'sbo', 'SalBow6G5266' => 'sbo', 'SalBow7G2265' => 'sbo', 'SalBow8G0850' => 'sbo', 'SalBow8G2592' => 'sbo', 'Sc05g0009240' => 'sci', 'Sc12g0002300' => 'sci', 'Sc21g0000100' => 'sci', 'Sc21g0004720' => 'sci', 'Sed0002949' => 'sed', 'Sed0004114' => 'sed', 'Sed0004306' => 'sed', 'Sed0006172' => 'sed', 'Sed0008413' => 'sed', 'Sed0013809' => 'sed', 'Sed0019556' => 'sed', 'SEGI_03570' => 'sgi', 'SEGI_07859' => 'sgi', 'SEGI_15042' => 'sgi', 'SEGI_16263' => 'sgi', 'SEGI_16552' => 'sgi', 'SEGI_24331' => 'sgi', 'SEGI_27316' => 'sgi', 'SEGI_29521' => 'sgi', 'SEGI_41342' => 'sgi', 'SGA_v2.0_scaffold27G11617' => 'sas', 'SGA_v2.0_scaffold316G48428' => 'sas', 'SGA_v2.0_scaffold49G18261' => 'sas', 'SGA_v2.0_scaffold7G03831' => 'sas', 'SGA_v2.0_scaffold93G28359' => 'sas', 'SHI02210' => 'shi', 'SHI06028' => 'shi', 'SHI06321' => 'shi', 'SMO111G0012' => 'smo', 'SMO228G0080' => 'smo', 'SMO356G0756' => 'smo', 'Solyc02g080620.3' => 'sly', 'Solyc06g074530.1' => 'sly', 'Solyc11g066890.1' => 'sly', 'Solyc11g072520.3' => 'sly', 'Sopen02g025330' => 'spe', 'Sopen06g031000' => 'spe', 'Sopen09g008240' => 'spe', 'Sopen09g025210' => 'spe', 'Sopen11g026600' => 'spe', 'Sopen11g030170' => 'spe', 'Sp1g10420' => 'spa', 'Sp3g06570' => 'spa', 'Sp4g10660' => 'spa', 'Sp5g16460' => 'spa', 'Sp6g22710' => 'spa', 'TAR365G0112' => 'tar', 'TAR369G0717' => 'tar', 'TAR374G0976' => 'tar', 'TAR623G1128' => 'tar', 'TAR626G1937' => 'tar', 'TAR627G0123' => 'tar', 'TAR628G0305' => 'tar', 'TAR636G1176' => 'tar', 'TAR636G2442' => 'tar', 'THA.LOC104800556' => 'tha', 'THA.LOC104809501' => 'tha', 'THA.LOC104815126' => 'tha', 'THA.LOC104815732' => 'tha', 'THA.LOC104823528' => 'tha', 'Thecc.02G365600' => 'tca', 'Thecc.06G222300' => 'tca', 'Thecc.09G261800' => 'tca', 'Thecc.09G291400' => 'tca', 'Thhalv10003028m.g' => 'esa', 'Thhalv10007886m.g' => 'esa', 'Thhalv10016085m.g' => 'esa', 'Thhalv10016681m.g' => 'esa', 'Thhalv10020951m.g' => 'esa', 'TPR.G15598' => 'tpr', 'TPR.G29305' => 'tpr', 'TPR.G32395' => 'tpr', 'TPR.G36998' => 'tpr', 'TPR.G4227' => 'tpr', 'TWI18G1433' => 'twi', 'TWI31G0755' => 'twi', 'TWI38G0912' => 'twi', 'TWI75G1097' => 'twi', 'TWI75G1619' => 'twi', 'TWI79G1336' => 'twi', 'unitig_0.g943' => 'ugi', 'unitig_0.g944' => 'ugi', 'unitig_22.g6646' => 'ugi', 'unitig_37.g12681' => 'ugi', 'unitig_8.g3290' => 'ugi', 'vmacro03278' => 'vma', 'vmacro12197' => 'vma', 'vmacro14478' => 'vma', 'vmacro15787' => 'vma', 'vmacro15789' => 'vma', 'vmacro15790' => 'vma', 'vmacro15806' => 'vma', 'vmacro22907' => 'vma', 'vmacro22908' => 'vma', 'vmacro22909' => 'vma', 'vmacro23108' => 'vma', 'VMungo0540G0540' => 'vmu', 'VMungo0540G2468' => 'vmu', 'VMungo1080G0390' => 'vmu', 'VMungo1080G1165' => 'vmu', 'VMungo1127G0170' => 'vmu', 'VMungo1127G2099' => 'vmu', 'VMungo1215G3013' => 'vmu', 'Zm00001eb013110' => 'zma', 'Zm00001eb084260' => 'zma', 'Zm00001eb096110' => 'zma', 'Zm00001eb217510' => 'zma', 'Zm00001eb322550' => 'zma', 'Zm00001eb390770' => 'zma', 'Zm00001eb397170' => 'zma', 'Zm00001eb404610' => 'zma', 'Zm00001eb421790' => 'zma' ) $gf_id = 'HOM05D000911' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000911' ) $data_identifier = 'HOM05D000911' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 16, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 5, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 6, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 8, 'nnu' => (int) 16, 'oeu' => (int) 8, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 5, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 16, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421790' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000911', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27780' => 'bna', 'A03p35380' => 'bna', 'A04p21160' => 'bna', 'A05p40570' => 'bna', 'A06p26900' => 'bna', 'A08p33230' => 'bna', 'A09p65960' => 'bna', 'A10p18290' => 'bna', 'Aa31LG1G12990' => 'aar', 'Aa31LG1G2980' => 'aar', 'Aa31LG4G14320' => 'aar', 'Aa31LG7G11800' => 'aar', 'Aa31sc36G50' => 'aar', 'Aa31sc36G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3721' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5459' => 'aag', 'Actinidia03028' => 'ach', 'Actinidia03753' => 'ach', 'Actinidia04187' => 'ach', 'Actinidia05509' => 'ach', 'Actinidia24180' => 'ach', 'Actinidia26906' => 'ach', 'Actinidia37097' => 'ach', 'Actinidia38249' => 'ach', 'Ah.01g003470' => 'amhyb', 'Ah.01g004580' => 'amhyb', 'Ah.01g014850' => 'amhyb', 'Ah.01g016830' => 'amhyb', 'Ah.14g088000' => 'amhyb', 'AL1G22980' => 'aly', 'AL3G18990' => 'aly', 'AL4G22440' => 'aly', 'AL4G33180' => 'aly', 'AL5G22920' => 'aly', 'AL6G33660' => 'aly', 'AL8G20720' => 'aly', 'Aqoxy1G00935' => 'aox', 'Aqoxy1G02094' => 'aox', 'Aqoxy2G01239' => 'aox', 'Aqoxy4G01870' => 'aox', 'Aqoxy7G00450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.36ZVTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71EM27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5D6C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH3WRE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3NCM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RIM768' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YB5YRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z36GDV' => 'arhy', 'AT1G08250' => 'ath', 'AT1G11790' => 'ath', 'AT2G27820' => 'ath', 'AT3G07630' => 'ath', 'AT3G44720' => 'ath', 'AT5G22630' => 'ath', 'ATR0693G304' => 'atr', 'ATR0794G109' => 'atr', 'ATR0820G120' => 'atr', 'ATR1159G064' => 'atr', 'Atru.chr10.2239' => 'acertr', 'Atru.chr3.3371' => 'acertr', 'Atru.chr6.3202' => 'acertr', 'AUR62006499' => 'cqu', 'AUR62012718' => 'cqu', 'AUR62021938' => 'cqu', 'AUR62023932' => 'cqu', 'AUR62025034' => 'cqu', 'AUR62025035' => 'cqu', 'AUR62038307' => 'cqu', 'AUR62043466' => 'cqu', 'BcaB02g10748' => 'bca', 'BcaB03g13231' => 'bca', 'BcaB03g14689' => 'bca', 'BcaB05g22716' => 'bca', 'BcaB06g28172' => 'bca', 'BcaB08g36413' => 'bca', 'BcaC01g02186' => 'bca', 'BcaC01g04272' => 'bca', 'BcaC02g08080' => 'bca', 'BcaC02g08227' => 'bca', 'BcaC03g13901' => 'bca', 'BcaC04g19593' => 'bca', 'BcaC04g20874' => 'bca', 'BcaC05g29557' => 'bca', 'BcaC06g35505' => 'bca', 'BcaC07g41954' => 'bca', 'BcaC07g41955' => 'bca', 'BcaC07g41956' => 'bca', 'BcaC07g42519' => 'bca', 'BcaC07g42520' => 'bca', 'BcaC07g42523' => 'bca', 'BcaC07g42524' => 'bca', 'BcaC07g42525' => 'bca', 'BcaC08g47480' => 'bca', 'BcaC08g47481' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00530' => 'bna', 'BolC2t07178H' => 'bol', 'BolC3t16567H' => 'bol', 'BolC4t27234H' => 'bol', 'BolC5t29728H' => 'bol', 'BolC5t34622H' => 'bol', 'BolC6t40321H' => 'bol', 'BolC7t42028H' => 'bol', 'BolC8t49125H' => 'bol', 'BolC8t52538H' => 'bol', 'BolC8t52539H' => 'bol', 'BolC9t56681H' => 'bol', 'BolC9t58266H' => 'bol', 'BolSC21t60294H' => 'bol', 'BraA02t05670Z' => 'bra', 'BraA03t12716Z' => 'bra', 'BraA04t17685Z' => 'bra', 'BraA05t22788Z' => 'bra', 'BraA06t24032Z' => 'bra', 'BraA06t25625Z' => 'bra', 'BraA07t27930Z' => 'bra', 'BraA08t35242Z' => 'bra', 'BraA09t38609Z' => 'bra', 'BraA10t43905Z' => 'bra', 'C02p11060' => 'bna', 'C03p42990' => 'bna', 'C03p67310' => 'bna', 'C04p56990' => 'bna', 'C04p58660' => 'bna', 'C05p09890' => 'bna', 'C05p59680' => 'bna', 'C06p19830' => 'bna', 'C06p53040' => 'bna', 'C07p15230' => 'bna', 'C08p50070' => 'bna', 'C08p50090' => 'bna', 'C09p38330' => 'bna', 'C09p53940' => 'bna', 'CAN.G1014.1' => 'can', 'CAN.G644.30' => 'can', 'CAN.G84.47' => 'can', 'CAN.G919.8' => 'can', 'CANSAT54G0113' => 'cansat', 'CANSAT54G1286' => 'cansat', 'CANSAT64G1020' => 'cansat', 'CARHR008080' => 'chi', 'CARHR008090' => 'chi', 'CARHR012130' => 'chi', 'CARHR038390' => 'chi', 'CARHR082330' => 'chi', 'CARHR120520' => 'chi', 'CARHR151470' => 'chi', 'CARHR190950' => 'chi', 'Carub.0001s0760' => 'cru', 'Carub.0001s1146' => 'cru', 'Carub.0003s0721' => 'cru', 'Carub.0004s0858' => 'cru', 'Carub.0005s1040' => 'cru', 'Carub.0006s2035' => 'cru', 'Carub.0015s0005' => 'cru', 'Ca_01607_v3' => 'car', 'Ca_01677_v3' => 'car', 'Ca_06087_v3' => 'car', 'Ca_19238_v3' => 'car', 'Ca_19373_v3' => 'car', 'Ca_21079_v3' => 'car', 'CBR_g54016' => 'cbr', 'CBR_g54018' => 'cbr', 'CBR_g54020' => 'cbr', 'Cc01_g09780' => 'ccan', 'Cc01_g11680' => 'ccan', 'Cc02_g15610' => 'ccan', 'Cc05_g04350' => 'ccan', 'Cc09_g01580' => 'ccan', 'CDE01G0795' => 'cde', 'CDE02G2024' => 'cde', 'CDE02G2260' => 'cde', 'CDE02G4561' => 'cde', 'CDE05G2733' => 'cde', 'CDE05G3422' => 'cde', 'CDE06G2003' => 'cde', 'CDE08G0576' => 'cde', 'CDE09G0048' => 'cde', 'CDE11G0805' => 'cde', 'Cfa003644' => 'cfa', 'Cfa006290' => 'cfa', 'Cfa010080' => 'cfa', 'Cfa011376' => 'cfa', 'Cfa011576' => 'cfa', 'Cfa011577' => 'cfa', 'Cfa014389' => 'cfa', 'Ciclev10006044m.g' => 'ccl', 'Ciclev10006954m.g' => 'ccl', 'Ciclev10015131m.g' => 'ccl', 'Ciclev10015580m.g' => 'ccl', 'Ciclev10028359m.g' => 'ccl', 'Ciclev10028573m.g' => 'ccl', 'CiPaw.03G159300' => 'cil', 'CiPaw.04G115100' => 'cil', 'CiPaw.09G092800' => 'cil', 'CiPaw.10G071800' => 'cil', 'CiPaw.13G105800' => 'cil', 'CiPaw.13G141000' => 'cil', 'CiPaw.14G103400' => 'cil', 'ClCG01G012700' => 'cla', 'ClCG01G012720' => 'cla', 'ClCG01G021920' => 'cla', 'ClCG02G008870' => 'cla', 'ClCG02G020840' => 'cla', 'ClCG02G021930' => 'cla', 'COL.COLO4_19302' => 'col', 'COL.COLO4_25262' => 'col', 'COL.COLO4_31788' => 'col', 'Cpa.g.c34684' => 'cpa', 'Cpa.g.c36520.1' => 'cpa', 'Cpa.g.c45626' => 'cpa', 'Cpa.g.sc121.17' => 'cpa', 'Cpa.g.sc13.22' => 'cpa', 'Cpa.g.sc87.88' => 'cpa', 'Cre06.g261800' => 'cre', 'CsaV3_1G014500' => 'csa', 'CsaV3_1G014510' => 'csa', 'CsaV3_2G034880' => 'csa', 'CsaV3_6G014760' => 'csa', 'CsaV3_6G021500' => 'csa', 'CsaV3_6G048980' => 'csa', 'CSS0002511' => 'camsi', 'CSS0007556' => 'camsi', 'CSS0008532' => 'camsi', 'CSS0009709' => 'camsi', 'CSS0010486' => 'camsi', 'CSS0016768' => 'camsi', 'CSS0023512' => 'camsi', 'CSS0025341' => 'camsi', 'CSS0027999' => 'camsi', 'CSS0028944' => 'camsi', 'CSS0032292' => 'camsi', 'CSS0032464' => 'camsi', 'CSS0037153' => 'camsi', 'CSS0039256' => 'camsi', 'CSS0048392' => 'camsi', 'CSS0050458' => 'camsi', 'DCAR_004224' => 'dca', 'DCAR_006147' => 'dca', 'DCAR_006465' => 'dca', 'DCAR_008159' => 'dca', 'DCAR_012164' => 'dca', 'DCAR_019764' => 'dca', 'Dinv05418' => 'din', 'Dinv10839' => 'din', 'Dinv12521' => 'din', 'Dinv13900' => 'din', 'Dinv29426' => 'din', 'Duzib150G0263' => 'dzi', 'Duzib168G1178' => 'dzi', 'Duzib168G1924' => 'dzi', 'Duzib170G0299' => 'dzi', 'Duzib170G0813' => 'dzi', 'Duzib235G1128' => 'dzi', 'Duzib248G1060' => 'dzi', 'ECA232G1910' => 'eca', 'ECA233G4621' => 'eca', 'ECA238G1216' => 'eca', 'ECA238G1784' => 'eca', 'ECA248G1242' => 'eca', 'EL10Ac8g20071' => 'bvu', 'EL10Ac9g21086' => 'bvu', 'EL10Ac9g22407' => 'bvu', 'EL10Ac9g22412' => 'bvu', 'Eucgr.A01119' => 'egr', 'Eucgr.E04043' => 'egr', 'Eucgr.J00428' => 'egr', 'Eucgr.J00958' => 'egr', 'FAN11G3091' => 'fan', 'FAN11G3651' => 'fan', 'FAN16G2566' => 'fan', 'FAN21G3155' => 'fan', 'FAN21G3400' => 'fan', 'FAN21G3543' => 'fan', 'FAN25G0234' => 'fan', 'FAN25G1422' => 'fan', 'FAN25G3392' => 'fan', 'FvH4_3g01940' => 'fve', 'FvH4_3g29870' => 'fve', 'FvH4_3g33680' => 'fve', 'Glyma.09G004200' => 'gma', 'Glyma.11G151288' => 'gma', 'Glyma.11G189100' => 'gma', 'Glyma.12G072500' => 'gma', 'Glyma.12G085500' => 'gma', 'Glyma.12G181800' => 'gma', 'Glyma.12G193000' => 'gma', 'Glyma.13G309300' => 'gma', 'Glyma.13G319000' => 'gma', 'Glyma.17G012600' => 'gma', 'Gohir.A06G148600' => 'ghi', 'Gohir.A07G115800' => 'ghi', 'Gohir.A08G003600' => 'ghi', 'Gohir.A09G093300' => 'ghi', 'Gohir.A09G105400' => 'ghi', 'Gohir.A09G105500' => 'ghi', 'Gohir.D06G154600' => 'ghi', 'Gohir.D07G120200' => 'ghi', 'Gohir.D08G013900' => 'ghi', 'Gohir.D09G093100' => 'ghi', 'Gohir.D09G102200' => 'ghi', 'Gohir.D09G102300' => 'ghi', 'Gorai.001G129400' => 'gra', 'Gorai.004G008200' => 'gra', 'Gorai.006G109800' => 'gra', 'Gorai.006G119500' => 'gra', 'Gorai.006G121300' => 'gra', 'Gorai.010G180700' => 'gra', 'GSVIVG01012716001' => 'vvi', 'GSVIVG01025118001' => 'vvi', 'GSVIVG01030439001' => 'vvi', 'GSVIVG01031397001' => 'vvi', 'HanXRQChr01g0004201' => 'han', 'HanXRQChr02g0054941' => 'han', 'HanXRQChr05g0141811' => 'han', 'HanXRQChr07g0197751' => 'han', 'HanXRQChr11g0346691' => 'han', 'HanXRQChr13g0396971' => 'han', 'HanXRQChr14g0432951' => 'han', 'HanXRQChr14g0452001' => 'han', 'HanXRQChr15g0496681' => 'han', 'HanXRQChr17g0557491' => 'han', 'HanXRQChr17g0557501' => 'han', 'Haze_06809' => 'cav', 'Haze_12852' => 'cav', 'Haze_15850' => 'cav', 'Haze_23446' => 'cav', 'Haze_23942' => 'cav', 'Haze_23943' => 'cav', 'Hma1.2p1_0091F.1_g046450' => 'hma', 'Hma1.2p1_0128F.1_g059910' => 'hma', 'Hma1.2p1_0249F.1_g102260' => 'hma', 'Hma1.2p1_0453F.1_g156190' => 'hma', 'Hma1.2p1_0695F.1_g204380' => 'hma', 'Hma1.2p1_0749F.1_g212650' => 'hma', 'Hma1.2p1_2156F.1_g315420' => 'hma', 'Hma1.2p1_2686F.1_g326940' => 'hma', 'HPP92_006428' => 'vpl', 'HPP92_012069' => 'vpl', 'HPP92_014129' => 'vpl', 'HPP92_014133' => 'vpl', 'HPP92_017315' => 'vpl', 'HPP92_026445' => 'vpl', 'HPP92_026446' => 'vpl', 'Hund00774' => 'sun', 'Hund07682' => 'sun', 'Hund21413' => 'sun', 'Hund23462' => 'sun', 'Hund23463' => 'sun', 'Lalb_Chr03g0027911' => 'lal', 'Lalb_Chr13g0304271' => 'lal', 'Lalb_Chr19g0137471' => 'lal', 'Lalb_Chr22g0350651' => 'lal', 'Lalb_Chr24g0395151' => 'lal', 'Lj1A1231T40' => 'lonja', 'Lj1A221T48' => 'lonja', 'Lj1C924T12' => 'lonja', 'Lj2C993G6' => 'lonja', 'Lj3g0005790' => 'lja', 'Lj3g0015432' => 'lja', 'Lj3g0017722' => 'lja', 'Lj3g0018497' => 'lja', 'Lj4g0025071' => 'lja', 'Lsat_1_v5_gn_1_129680' => 'lsa', 'Lsat_1_v5_gn_2_25321' => 'lsa', 'Lsat_1_v5_gn_2_95461' => 'lsa', 'Lsat_1_v5_gn_4_159620' => 'lsa', 'Lsat_1_v5_gn_6_41301' => 'lsa', 'Lsat_1_v5_gn_6_74660' => 'lsa', 'Lsat_1_v5_gn_7_11520' => 'lsa', 'Lsat_1_v5_gn_9_67680' => 'lsa', 'Manes.04G008300' => 'mes', 'Manes.04G008400' => 'mes', 'Manes.04G026500' => 'mes', 'Manes.10G135300' => 'mes', 'Manes.11G157300' => 'mes', 'Manes.12G074000' => 'mes', 'Manes.16G006200' => 'mes', 'Manes.17G026400' => 'mes', 'Mapoly0024s0086' => 'mpo', 'Mapoly0024s0087' => 'mpo', 'Mapoly0071s0057' => 'mpo', 'Mapoly0204s0012' => 'mpo', 'MBI04_g37681_MAGBIO' => 'mbi', 'MBI05_g17779_MAGBIO' => 'mbi', 'MBI12_g31184_MAGBIO' => 'mbi', 'MBI17_g11083_MAGBIO' => 'mbi', 'MBI18_g03883_MAGBIO' => 'mbi', 'MBI18_g28940_MAGBIO' => 'mbi', 'MCO01G690' => 'mco', 'MD03G1109900' => 'mdo', 'MD03G1134800' => 'mdo', 'MD05G1348000' => 'mdo', 'MD10G1322400' => 'mdo', 'MD11G1123300' => 'mdo', 'MD11G1157600' => 'mdo', 'Medtr2g084875' => 'mtr', 'Medtr2g088130' => 'mtr', 'Medtr4g055310' => 'mtr', 'Medtr4g061070' => 'mtr', 'Medtr4g132250' => 'mtr', 'MELO3C004795.2' => 'cme', 'MELO3C004797.2' => 'cme', 'MELO3C007396.2' => 'cme', 'MELO3C019277.2' => 'cme', 'MELO3C021449.2' => 'cme', 'MELO3C025736.2' => 'cme', 'Migut.D02175' => 'egut', 'Migut.H01573' => 'egut', 'Migut.M01327' => 'egut', 'Migut.N02513' => 'egut', 'MSTRG.14638' => 'ama', 'MSTRG.18632' => 'ama', 'MSTRG.7203' => 'ama', 'Nitab4.5_0000533g0140' => 'nta', 'Nitab4.5_0000888g0150' => 'nta', 'Nitab4.5_0001453g0040' => 'nta', 'Nitab4.5_0002827g0090' => 'nta', 'Nitab4.5_0003082g0040' => 'nta', 'Nitab4.5_0007799g0040' => 'nta', 'Nitab4.5_0008983g0010' => 'nta', 'Nitab4.5_0009017g0020' => 'nta', 'Nn1g02132' => 'nnu', 'Nn1g03492' => 'nnu', 'Nn1g03493' => 'nnu', 'Nn1g03494' => 'nnu', 'Nn1g07164' => 'nnu', 'Nn1g07291' => 'nnu', 'Nn2g10655' => 'nnu', 'Nn2g11652' => 'nnu', 'Nn2g14008' => 'nnu', 'Nn3g17476' => 'nnu', 'Nn3g17477' => 'nnu', 'Nn4g22370' => 'nnu', 'Nn4g25255' => 'nnu', 'Nn5g27755' => 'nnu', 'Nn6g34260' => 'nnu', 'Nn6g35041' => 'nnu', 'Oeu005924.1' => 'oeu', 'Oeu008383.1' => 'oeu', 'Oeu014928.1' => 'oeu', 'Oeu019889.1' => 'oeu', 'Oeu022271.1' => 'oeu', 'Oeu025271.1' => 'oeu', 'Oeu036302.1' => 'oeu', 'Oeu044100.1' => 'oeu', 'Os01g0528300' => 'osa', 'Os03g0286200' => 'osa', 'Os04g0406600' => 'osa', 'Os07g0512000' => 'osa', 'Os07g0694600' => 'osa', 'Os08g0411000' => 'osa', 'Os09g0565700' => 'osa', 'Os09g0566050' => 'osa', 'Os10g0523700' => 'osa', 'Peaxi162Scf00002g00514' => 'pax', 'Peaxi162Scf00047g01817' => 'pax', 'Peaxi162Scf00114g00001' => 'pax', 'Peaxi162Scf00147g00613' => 'pax', 'Peaxi162Scf00389g00425' => 'pax', 'PGR042G1139' => 'pgr', 'PGR042G3273' => 'pgr', 'PGR102G2180' => 'pgr', 'PGR119G0234' => 'pgr', 'PGR119G0668' => 'pgr', 'PGSC0003DMG400007122' => 'stu', 'PGSC0003DMG400016478' => 'stu', 'PGSC0003DMG400025374' => 'stu', 'PGSC0003DMG400026536' => 'stu', 'Phvul.003G079600' => 'pvu', 'Phvul.005G115600' => 'pvu', 'Phvul.005G127100' => 'pvu', 'Phvul.006G149500' => 'pvu', 'Phvul.006G149600' => 'pvu', 'Phvul.011G071800' => 'pvu', 'Phvul.011G090400' => 'pvu', 'Potri.004G013400' => 'ptr', 'Potri.004G188100' => 'ptr', 'Potri.008G195500' => 'ptr', 'Potri.009G148800' => 'ptr', 'Potri.011G004700' => 'ptr', 'Pp3c17_22810' => 'ppa', 'Pp3c18_4480' => 'ppa', 'Pp3c19_13030' => 'ppa', 'Pp3c1_33620' => 'ppa', 'Pp3c2_9380' => 'ppa', 'PRCOL_00001023' => 'pco', 'Prupe.3G216300' => 'ppe', 'Prupe.4G019500' => 'ppe', 'Prupe.6G092500' => 'ppe', 'Prupe.6G119200' => 'ppe', 'Psat0s1945g0080' => 'psa', 'Psat0s4167g0040' => 'psa', 'Psat1g185800' => 'psa', 'Psat4g006440' => 'psa', 'Psat4g006480' => 'psa', 'Psat4g168120' => 'psa', 'Psat5g255680' => 'psa', 'Psat5g261760' => 'psa', 'Psat7g222120' => 'psa', 'PSO063G7252' => 'pso', 'PSO170G4778' => 'pso', 'PSO210G2249' => 'pso', 'PSO339G2411' => 'pso', 'PSO339G2457' => 'pso', 'PSO339G2854' => 'pso', 'PSO339G4288' => 'pso', 'PSO339G4615' => 'pso', 'PSO384G2796' => 'pso', 'PSO384G2940' => 'pso', 'PSO384G4227' => 'pso', 'PSO478G1425' => 'pso', 'PSO541G3863' => 'pso', 'PSO675G0507' => 'pso', 'PSO782G0338' => 'pso', 'PSO832G0644' => 'pso', 'QL01p013664' => 'qlo', 'QL01p036598' => 'qlo', 'QL05p072984' => 'qlo', 'QL08p005768' => 'qlo', 'QL08p032743' => 'qlo', 'QL93p0073_0439' => 'qlo', 'QL93p0073_0444' => 'qlo', 'RcHm_v2.0_Chr5g0002851' => 'rch', 'RcHm_v2.0_Chr5g0055201' => 'rch', 'RcHm_v2.0_Chr5g0061191' => 'rch', 'RcHm_v2.0_Chr7g0203231' => 'rch', 'Rhsim01G0208100' => 'rsi', 'Rhsim01G0208200' => 'rsi', 'Rhsim02G0106500' => 'rsi', 'Rhsim03G0107900' => 'rsi', 'Rhsim06G0163400' => 'rsi', 'Rhsim13G0105200' => 'rsi', 'Sabra04G0006300' => 'sbr', 'Sabra04G0127000' => 'sbr', 'Sabra08G0148700' => 'sbr', 'Sabra09G0117400' => 'sbr', 'SalBow1G3326' => 'sbo', 'SalBow3G3228' => 'sbo', 'SalBow6G1634' => 'sbo', 'SalBow6G3603' => 'sbo', 'SalBow6G5266' => 'sbo', 'SalBow7G2265' => 'sbo', 'SalBow8G0850' => 'sbo', 'SalBow8G2592' => 'sbo', 'Sc05g0009240' => 'sci', 'Sc12g0002300' => 'sci', 'Sc21g0000100' => 'sci', 'Sc21g0004720' => 'sci', 'Sed0002949' => 'sed', 'Sed0004114' => 'sed', 'Sed0004306' => 'sed', 'Sed0006172' => 'sed', 'Sed0008413' => 'sed', 'Sed0013809' => 'sed', 'Sed0019556' => 'sed', 'SEGI_03570' => 'sgi', 'SEGI_07859' => 'sgi', 'SEGI_15042' => 'sgi', 'SEGI_16263' => 'sgi', 'SEGI_16552' => 'sgi', 'SEGI_24331' => 'sgi', 'SEGI_27316' => 'sgi', 'SEGI_29521' => 'sgi', 'SEGI_41342' => 'sgi', 'SGA_v2.0_scaffold27G11617' => 'sas', 'SGA_v2.0_scaffold316G48428' => 'sas', 'SGA_v2.0_scaffold49G18261' => 'sas', 'SGA_v2.0_scaffold7G03831' => 'sas', 'SGA_v2.0_scaffold93G28359' => 'sas', 'SHI02210' => 'shi', 'SHI06028' => 'shi', 'SHI06321' => 'shi', 'SMO111G0012' => 'smo', 'SMO228G0080' => 'smo', 'SMO356G0756' => 'smo', 'Solyc02g080620.3' => 'sly', 'Solyc06g074530.1' => 'sly', 'Solyc11g066890.1' => 'sly', 'Solyc11g072520.3' => 'sly', 'Sopen02g025330' => 'spe', 'Sopen06g031000' => 'spe', 'Sopen09g008240' => 'spe', 'Sopen09g025210' => 'spe', 'Sopen11g026600' => 'spe', 'Sopen11g030170' => 'spe', 'Sp1g10420' => 'spa', 'Sp3g06570' => 'spa', 'Sp4g10660' => 'spa', 'Sp5g16460' => 'spa', 'Sp6g22710' => 'spa', 'TAR365G0112' => 'tar', 'TAR369G0717' => 'tar', 'TAR374G0976' => 'tar', 'TAR623G1128' => 'tar', 'TAR626G1937' => 'tar', 'TAR627G0123' => 'tar', 'TAR628G0305' => 'tar', 'TAR636G1176' => 'tar', 'TAR636G2442' => 'tar', 'THA.LOC104800556' => 'tha', 'THA.LOC104809501' => 'tha', 'THA.LOC104815126' => 'tha', 'THA.LOC104815732' => 'tha', 'THA.LOC104823528' => 'tha', 'Thecc.02G365600' => 'tca', 'Thecc.06G222300' => 'tca', 'Thecc.09G261800' => 'tca', 'Thecc.09G291400' => 'tca', 'Thhalv10003028m.g' => 'esa', 'Thhalv10007886m.g' => 'esa', 'Thhalv10016085m.g' => 'esa', 'Thhalv10016681m.g' => 'esa', 'Thhalv10020951m.g' => 'esa', 'TPR.G15598' => 'tpr', 'TPR.G29305' => 'tpr', 'TPR.G32395' => 'tpr', 'TPR.G36998' => 'tpr', 'TPR.G4227' => 'tpr', 'TWI18G1433' => 'twi', 'TWI31G0755' => 'twi', 'TWI38G0912' => 'twi', 'TWI75G1097' => 'twi', 'TWI75G1619' => 'twi', 'TWI79G1336' => 'twi', 'unitig_0.g943' => 'ugi', 'unitig_0.g944' => 'ugi', 'unitig_22.g6646' => 'ugi', 'unitig_37.g12681' => 'ugi', 'unitig_8.g3290' => 'ugi', 'vmacro03278' => 'vma', 'vmacro12197' => 'vma', 'vmacro14478' => 'vma', 'vmacro15787' => 'vma', 'vmacro15789' => 'vma', 'vmacro15790' => 'vma', 'vmacro15806' => 'vma', 'vmacro22907' => 'vma', 'vmacro22908' => 'vma', 'vmacro22909' => 'vma', 'vmacro23108' => 'vma', 'VMungo0540G0540' => 'vmu', 'VMungo0540G2468' => 'vmu', 'VMungo1080G0390' => 'vmu', 'VMungo1080G1165' => 'vmu', 'VMungo1127G0170' => 'vmu', 'VMungo1127G2099' => 'vmu', 'VMungo1215G3013' => 'vmu', 'Zm00001eb013110' => 'zma', 'Zm00001eb084260' => 'zma', 'Zm00001eb096110' => 'zma', 'Zm00001eb217510' => 'zma', 'Zm00001eb322550' => 'zma', 'Zm00001eb390770' => 'zma', 'Zm00001eb397170' => 'zma', 'Zm00001eb404610' => 'zma', 'Zm00001eb421790' => 'zma' ), 'gf_id' => 'HOM05D000911', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000911' ), 'data_identifier' => 'HOM05D000911', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000911', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27780' => 'bna', 'A03p35380' => 'bna', 'A04p21160' => 'bna', 'A05p40570' => 'bna', 'A06p26900' => 'bna', 'A08p33230' => 'bna', 'A09p65960' => 'bna', 'A10p18290' => 'bna', 'Aa31LG1G12990' => 'aar', 'Aa31LG1G2980' => 'aar', 'Aa31LG4G14320' => 'aar', 'Aa31LG7G11800' => 'aar', 'Aa31sc36G50' => 'aar', 'Aa31sc36G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3721' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5459' => 'aag', 'Actinidia03028' => 'ach', 'Actinidia03753' => 'ach', 'Actinidia04187' => 'ach', 'Actinidia05509' => 'ach', 'Actinidia24180' => 'ach', 'Actinidia26906' => 'ach', 'Actinidia37097' => 'ach', 'Actinidia38249' => 'ach', 'Ah.01g003470' => 'amhyb', 'Ah.01g004580' => 'amhyb', 'Ah.01g014850' => 'amhyb', 'Ah.01g016830' => 'amhyb', 'Ah.14g088000' => 'amhyb', 'AL1G22980' => 'aly', 'AL3G18990' => 'aly', 'AL4G22440' => 'aly', 'AL4G33180' => 'aly', 'AL5G22920' => 'aly', 'AL6G33660' => 'aly', 'AL8G20720' => 'aly', 'Aqoxy1G00935' => 'aox', 'Aqoxy1G02094' => 'aox', 'Aqoxy2G01239' => 'aox', 'Aqoxy4G01870' => 'aox', 'Aqoxy7G00450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.36ZVTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71EM27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5D6C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH3WRE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3NCM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RIM768' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YB5YRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z36GDV' => 'arhy', 'AT1G08250' => 'ath', 'AT1G11790' => 'ath', 'AT2G27820' => 'ath', 'AT3G07630' => 'ath', 'AT3G44720' => 'ath', 'AT5G22630' => 'ath', 'ATR0693G304' => 'atr', 'ATR0794G109' => 'atr', 'ATR0820G120' => 'atr', 'ATR1159G064' => 'atr', 'Atru.chr10.2239' => 'acertr', 'Atru.chr3.3371' => 'acertr', 'Atru.chr6.3202' => 'acertr', 'AUR62006499' => 'cqu', 'AUR62012718' => 'cqu', 'AUR62021938' => 'cqu', 'AUR62023932' => 'cqu', 'AUR62025034' => 'cqu', 'AUR62025035' => 'cqu', 'AUR62038307' => 'cqu', 'AUR62043466' => 'cqu', 'BcaB02g10748' => 'bca', 'BcaB03g13231' => 'bca', 'BcaB03g14689' => 'bca', 'BcaB05g22716' => 'bca', 'BcaB06g28172' => 'bca', 'BcaB08g36413' => 'bca', 'BcaC01g02186' => 'bca', 'BcaC01g04272' => 'bca', 'BcaC02g08080' => 'bca', 'BcaC02g08227' => 'bca', 'BcaC03g13901' => 'bca', 'BcaC04g19593' => 'bca', 'BcaC04g20874' => 'bca', 'BcaC05g29557' => 'bca', 'BcaC06g35505' => 'bca', 'BcaC07g41954' => 'bca', 'BcaC07g41955' => 'bca', 'BcaC07g41956' => 'bca', 'BcaC07g42519' => 'bca', 'BcaC07g42520' => 'bca', 'BcaC07g42523' => 'bca', 'BcaC07g42524' => 'bca', 'BcaC07g42525' => 'bca', 'BcaC08g47480' => 'bca', 'BcaC08g47481' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00530' => 'bna', 'BolC2t07178H' => 'bol', 'BolC3t16567H' => 'bol', 'BolC4t27234H' => 'bol', 'BolC5t29728H' => 'bol', 'BolC5t34622H' => 'bol', 'BolC6t40321H' => 'bol', 'BolC7t42028H' => 'bol', 'BolC8t49125H' => 'bol', 'BolC8t52538H' => 'bol', 'BolC8t52539H' => 'bol', 'BolC9t56681H' => 'bol', 'BolC9t58266H' => 'bol', 'BolSC21t60294H' => 'bol', 'BraA02t05670Z' => 'bra', 'BraA03t12716Z' => 'bra', 'BraA04t17685Z' => 'bra', 'BraA05t22788Z' => 'bra', 'BraA06t24032Z' => 'bra', 'BraA06t25625Z' => 'bra', 'BraA07t27930Z' => 'bra', 'BraA08t35242Z' => 'bra', 'BraA09t38609Z' => 'bra', 'BraA10t43905Z' => 'bra', 'C02p11060' => 'bna', 'C03p42990' => 'bna', 'C03p67310' => 'bna', 'C04p56990' => 'bna', 'C04p58660' => 'bna', 'C05p09890' => 'bna', 'C05p59680' => 'bna', 'C06p19830' => 'bna', 'C06p53040' => 'bna', 'C07p15230' => 'bna', 'C08p50070' => 'bna', 'C08p50090' => 'bna', 'C09p38330' => 'bna', 'C09p53940' => 'bna', 'CAN.G1014.1' => 'can', 'CAN.G644.30' => 'can', 'CAN.G84.47' => 'can', 'CAN.G919.8' => 'can', 'CANSAT54G0113' => 'cansat', 'CANSAT54G1286' => 'cansat', 'CANSAT64G1020' => 'cansat', 'CARHR008080' => 'chi', 'CARHR008090' => 'chi', 'CARHR012130' => 'chi', 'CARHR038390' => 'chi', 'CARHR082330' => 'chi', 'CARHR120520' => 'chi', 'CARHR151470' => 'chi', 'CARHR190950' => 'chi', 'Carub.0001s0760' => 'cru', 'Carub.0001s1146' => 'cru', 'Carub.0003s0721' => 'cru', 'Carub.0004s0858' => 'cru', 'Carub.0005s1040' => 'cru', 'Carub.0006s2035' => 'cru', 'Carub.0015s0005' => 'cru', 'Ca_01607_v3' => 'car', 'Ca_01677_v3' => 'car', 'Ca_06087_v3' => 'car', 'Ca_19238_v3' => 'car', 'Ca_19373_v3' => 'car', 'Ca_21079_v3' => 'car', 'CBR_g54016' => 'cbr', 'CBR_g54018' => 'cbr', 'CBR_g54020' => 'cbr', 'Cc01_g09780' => 'ccan', 'Cc01_g11680' => 'ccan', 'Cc02_g15610' => 'ccan', 'Cc05_g04350' => 'ccan', 'Cc09_g01580' => 'ccan', 'CDE01G0795' => 'cde', 'CDE02G2024' => 'cde', 'CDE02G2260' => 'cde', 'CDE02G4561' => 'cde', 'CDE05G2733' => 'cde', 'CDE05G3422' => 'cde', 'CDE06G2003' => 'cde', 'CDE08G0576' => 'cde', 'CDE09G0048' => 'cde', 'CDE11G0805' => 'cde', 'Cfa003644' => 'cfa', 'Cfa006290' => 'cfa', 'Cfa010080' => 'cfa', 'Cfa011376' => 'cfa', 'Cfa011576' => 'cfa', 'Cfa011577' => 'cfa', 'Cfa014389' => 'cfa', 'Ciclev10006044m.g' => 'ccl', 'Ciclev10006954m.g' => 'ccl', 'Ciclev10015131m.g' => 'ccl', 'Ciclev10015580m.g' => 'ccl', 'Ciclev10028359m.g' => 'ccl', 'Ciclev10028573m.g' => 'ccl', 'CiPaw.03G159300' => 'cil', 'CiPaw.04G115100' => 'cil', 'CiPaw.09G092800' => 'cil', 'CiPaw.10G071800' => 'cil', 'CiPaw.13G105800' => 'cil', 'CiPaw.13G141000' => 'cil', 'CiPaw.14G103400' => 'cil', 'ClCG01G012700' => 'cla', 'ClCG01G012720' => 'cla', 'ClCG01G021920' => 'cla', 'ClCG02G008870' => 'cla', 'ClCG02G020840' => 'cla', 'ClCG02G021930' => 'cla', 'COL.COLO4_19302' => 'col', 'COL.COLO4_25262' => 'col', 'COL.COLO4_31788' => 'col', 'Cpa.g.c34684' => 'cpa', 'Cpa.g.c36520.1' => 'cpa', 'Cpa.g.c45626' => 'cpa', 'Cpa.g.sc121.17' => 'cpa', 'Cpa.g.sc13.22' => 'cpa', 'Cpa.g.sc87.88' => 'cpa', 'Cre06.g261800' => 'cre', 'CsaV3_1G014500' => 'csa', 'CsaV3_1G014510' => 'csa', 'CsaV3_2G034880' => 'csa', 'CsaV3_6G014760' => 'csa', 'CsaV3_6G021500' => 'csa', 'CsaV3_6G048980' => 'csa', 'CSS0002511' => 'camsi', 'CSS0007556' => 'camsi', 'CSS0008532' => 'camsi', 'CSS0009709' => 'camsi', 'CSS0010486' => 'camsi', 'CSS0016768' => 'camsi', 'CSS0023512' => 'camsi', 'CSS0025341' => 'camsi', 'CSS0027999' => 'camsi', 'CSS0028944' => 'camsi', 'CSS0032292' => 'camsi', 'CSS0032464' => 'camsi', 'CSS0037153' => 'camsi', 'CSS0039256' => 'camsi', 'CSS0048392' => 'camsi', 'CSS0050458' => 'camsi', 'DCAR_004224' => 'dca', 'DCAR_006147' => 'dca', 'DCAR_006465' => 'dca', 'DCAR_008159' => 'dca', 'DCAR_012164' => 'dca', 'DCAR_019764' => 'dca', 'Dinv05418' => 'din', 'Dinv10839' => 'din', 'Dinv12521' => 'din', 'Dinv13900' => 'din', 'Dinv29426' => 'din', 'Duzib150G0263' => 'dzi', 'Duzib168G1178' => 'dzi', 'Duzib168G1924' => 'dzi', 'Duzib170G0299' => 'dzi', 'Duzib170G0813' => 'dzi', 'Duzib235G1128' => 'dzi', 'Duzib248G1060' => 'dzi', 'ECA232G1910' => 'eca', 'ECA233G4621' => 'eca', 'ECA238G1216' => 'eca', 'ECA238G1784' => 'eca', 'ECA248G1242' => 'eca', 'EL10Ac8g20071' => 'bvu', 'EL10Ac9g21086' => 'bvu', 'EL10Ac9g22407' => 'bvu', 'EL10Ac9g22412' => 'bvu', 'Eucgr.A01119' => 'egr', 'Eucgr.E04043' => 'egr', 'Eucgr.J00428' => 'egr', 'Eucgr.J00958' => 'egr', 'FAN11G3091' => 'fan', 'FAN11G3651' => 'fan', 'FAN16G2566' => 'fan', 'FAN21G3155' => 'fan', 'FAN21G3400' => 'fan', 'FAN21G3543' => 'fan', 'FAN25G0234' => 'fan', 'FAN25G1422' => 'fan', 'FAN25G3392' => 'fan', 'FvH4_3g01940' => 'fve', 'FvH4_3g29870' => 'fve', 'FvH4_3g33680' => 'fve', 'Glyma.09G004200' => 'gma', 'Glyma.11G151288' => 'gma', 'Glyma.11G189100' => 'gma', 'Glyma.12G072500' => 'gma', 'Glyma.12G085500' => 'gma', 'Glyma.12G181800' => 'gma', 'Glyma.12G193000' => 'gma', 'Glyma.13G309300' => 'gma', 'Glyma.13G319000' => 'gma', 'Glyma.17G012600' => 'gma', 'Gohir.A06G148600' => 'ghi', 'Gohir.A07G115800' => 'ghi', 'Gohir.A08G003600' => 'ghi', 'Gohir.A09G093300' => 'ghi', 'Gohir.A09G105400' => 'ghi', 'Gohir.A09G105500' => 'ghi', 'Gohir.D06G154600' => 'ghi', 'Gohir.D07G120200' => 'ghi', 'Gohir.D08G013900' => 'ghi', 'Gohir.D09G093100' => 'ghi', 'Gohir.D09G102200' => 'ghi', 'Gohir.D09G102300' => 'ghi', 'Gorai.001G129400' => 'gra', 'Gorai.004G008200' => 'gra', 'Gorai.006G109800' => 'gra', 'Gorai.006G119500' => 'gra', 'Gorai.006G121300' => 'gra', 'Gorai.010G180700' => 'gra', 'GSVIVG01012716001' => 'vvi', 'GSVIVG01025118001' => 'vvi', 'GSVIVG01030439001' => 'vvi', 'GSVIVG01031397001' => 'vvi', 'HanXRQChr01g0004201' => 'han', 'HanXRQChr02g0054941' => 'han', 'HanXRQChr05g0141811' => 'han', 'HanXRQChr07g0197751' => 'han', 'HanXRQChr11g0346691' => 'han', 'HanXRQChr13g0396971' => 'han', 'HanXRQChr14g0432951' => 'han', 'HanXRQChr14g0452001' => 'han', 'HanXRQChr15g0496681' => 'han', 'HanXRQChr17g0557491' => 'han', 'HanXRQChr17g0557501' => 'han', 'Haze_06809' => 'cav', 'Haze_12852' => 'cav', 'Haze_15850' => 'cav', 'Haze_23446' => 'cav', 'Haze_23942' => 'cav', 'Haze_23943' => 'cav', 'Hma1.2p1_0091F.1_g046450' => 'hma', 'Hma1.2p1_0128F.1_g059910' => 'hma', 'Hma1.2p1_0249F.1_g102260' => 'hma', 'Hma1.2p1_0453F.1_g156190' => 'hma', 'Hma1.2p1_0695F.1_g204380' => 'hma', 'Hma1.2p1_0749F.1_g212650' => 'hma', 'Hma1.2p1_2156F.1_g315420' => 'hma', 'Hma1.2p1_2686F.1_g326940' => 'hma', 'HPP92_006428' => 'vpl', 'HPP92_012069' => 'vpl', 'HPP92_014129' => 'vpl', 'HPP92_014133' => 'vpl', 'HPP92_017315' => 'vpl', 'HPP92_026445' => 'vpl', 'HPP92_026446' => 'vpl', 'Hund00774' => 'sun', 'Hund07682' => 'sun', 'Hund21413' => 'sun', 'Hund23462' => 'sun', 'Hund23463' => 'sun', 'Lalb_Chr03g0027911' => 'lal', 'Lalb_Chr13g0304271' => 'lal', 'Lalb_Chr19g0137471' => 'lal', 'Lalb_Chr22g0350651' => 'lal', 'Lalb_Chr24g0395151' => 'lal', 'Lj1A1231T40' => 'lonja', 'Lj1A221T48' => 'lonja', 'Lj1C924T12' => 'lonja', 'Lj2C993G6' => 'lonja', 'Lj3g0005790' => 'lja', 'Lj3g0015432' => 'lja', 'Lj3g0017722' => 'lja', 'Lj3g0018497' => 'lja', 'Lj4g0025071' => 'lja', 'Lsat_1_v5_gn_1_129680' => 'lsa', 'Lsat_1_v5_gn_2_25321' => 'lsa', 'Lsat_1_v5_gn_2_95461' => 'lsa', 'Lsat_1_v5_gn_4_159620' => 'lsa', 'Lsat_1_v5_gn_6_41301' => 'lsa', 'Lsat_1_v5_gn_6_74660' => 'lsa', 'Lsat_1_v5_gn_7_11520' => 'lsa', 'Lsat_1_v5_gn_9_67680' => 'lsa', 'Manes.04G008300' => 'mes', 'Manes.04G008400' => 'mes', 'Manes.04G026500' => 'mes', 'Manes.10G135300' => 'mes', 'Manes.11G157300' => 'mes', 'Manes.12G074000' => 'mes', 'Manes.16G006200' => 'mes', 'Manes.17G026400' => 'mes', 'Mapoly0024s0086' => 'mpo', 'Mapoly0024s0087' => 'mpo', 'Mapoly0071s0057' => 'mpo', 'Mapoly0204s0012' => 'mpo', 'MBI04_g37681_MAGBIO' => 'mbi', 'MBI05_g17779_MAGBIO' => 'mbi', 'MBI12_g31184_MAGBIO' => 'mbi', 'MBI17_g11083_MAGBIO' => 'mbi', 'MBI18_g03883_MAGBIO' => 'mbi', 'MBI18_g28940_MAGBIO' => 'mbi', 'MCO01G690' => 'mco', 'MD03G1109900' => 'mdo', 'MD03G1134800' => 'mdo', 'MD05G1348000' => 'mdo', 'MD10G1322400' => 'mdo', 'MD11G1123300' => 'mdo', 'MD11G1157600' => 'mdo', 'Medtr2g084875' => 'mtr', 'Medtr2g088130' => 'mtr', 'Medtr4g055310' => 'mtr', 'Medtr4g061070' => 'mtr', 'Medtr4g132250' => 'mtr', 'MELO3C004795.2' => 'cme', 'MELO3C004797.2' => 'cme', 'MELO3C007396.2' => 'cme', 'MELO3C019277.2' => 'cme', 'MELO3C021449.2' => 'cme', 'MELO3C025736.2' => 'cme', 'Migut.D02175' => 'egut', 'Migut.H01573' => 'egut', 'Migut.M01327' => 'egut', 'Migut.N02513' => 'egut', 'MSTRG.14638' => 'ama', 'MSTRG.18632' => 'ama', 'MSTRG.7203' => 'ama', 'Nitab4.5_0000533g0140' => 'nta', 'Nitab4.5_0000888g0150' => 'nta', 'Nitab4.5_0001453g0040' => 'nta', 'Nitab4.5_0002827g0090' => 'nta', 'Nitab4.5_0003082g0040' => 'nta', 'Nitab4.5_0007799g0040' => 'nta', 'Nitab4.5_0008983g0010' => 'nta', 'Nitab4.5_0009017g0020' => 'nta', 'Nn1g02132' => 'nnu', 'Nn1g03492' => 'nnu', 'Nn1g03493' => 'nnu', 'Nn1g03494' => 'nnu', 'Nn1g07164' => 'nnu', 'Nn1g07291' => 'nnu', 'Nn2g10655' => 'nnu', 'Nn2g11652' => 'nnu', 'Nn2g14008' => 'nnu', 'Nn3g17476' => 'nnu', 'Nn3g17477' => 'nnu', 'Nn4g22370' => 'nnu', 'Nn4g25255' => 'nnu', 'Nn5g27755' => 'nnu', 'Nn6g34260' => 'nnu', 'Nn6g35041' => 'nnu', 'Oeu005924.1' => 'oeu', 'Oeu008383.1' => 'oeu', 'Oeu014928.1' => 'oeu', 'Oeu019889.1' => 'oeu', 'Oeu022271.1' => 'oeu', 'Oeu025271.1' => 'oeu', 'Oeu036302.1' => 'oeu', 'Oeu044100.1' => 'oeu', 'Os01g0528300' => 'osa', 'Os03g0286200' => 'osa', 'Os04g0406600' => 'osa', 'Os07g0512000' => 'osa', 'Os07g0694600' => 'osa', 'Os08g0411000' => 'osa', 'Os09g0565700' => 'osa', 'Os09g0566050' => 'osa', 'Os10g0523700' => 'osa', 'Peaxi162Scf00002g00514' => 'pax', 'Peaxi162Scf00047g01817' => 'pax', 'Peaxi162Scf00114g00001' => 'pax', 'Peaxi162Scf00147g00613' => 'pax', 'Peaxi162Scf00389g00425' => 'pax', 'PGR042G1139' => 'pgr', 'PGR042G3273' => 'pgr', 'PGR102G2180' => 'pgr', 'PGR119G0234' => 'pgr', 'PGR119G0668' => 'pgr', 'PGSC0003DMG400007122' => 'stu', 'PGSC0003DMG400016478' => 'stu', 'PGSC0003DMG400025374' => 'stu', 'PGSC0003DMG400026536' => 'stu', 'Phvul.003G079600' => 'pvu', 'Phvul.005G115600' => 'pvu', 'Phvul.005G127100' => 'pvu', 'Phvul.006G149500' => 'pvu', 'Phvul.006G149600' => 'pvu', 'Phvul.011G071800' => 'pvu', 'Phvul.011G090400' => 'pvu', 'Potri.004G013400' => 'ptr', 'Potri.004G188100' => 'ptr', 'Potri.008G195500' => 'ptr', 'Potri.009G148800' => 'ptr', 'Potri.011G004700' => 'ptr', 'Pp3c17_22810' => 'ppa', 'Pp3c18_4480' => 'ppa', 'Pp3c19_13030' => 'ppa', 'Pp3c1_33620' => 'ppa', 'Pp3c2_9380' => 'ppa', 'PRCOL_00001023' => 'pco', 'Prupe.3G216300' => 'ppe', 'Prupe.4G019500' => 'ppe', 'Prupe.6G092500' => 'ppe', 'Prupe.6G119200' => 'ppe', 'Psat0s1945g0080' => 'psa', 'Psat0s4167g0040' => 'psa', 'Psat1g185800' => 'psa', 'Psat4g006440' => 'psa', 'Psat4g006480' => 'psa', 'Psat4g168120' => 'psa', 'Psat5g255680' => 'psa', 'Psat5g261760' => 'psa', 'Psat7g222120' => 'psa', 'PSO063G7252' => 'pso', 'PSO170G4778' => 'pso', 'PSO210G2249' => 'pso', 'PSO339G2411' => 'pso', 'PSO339G2457' => 'pso', 'PSO339G2854' => 'pso', 'PSO339G4288' => 'pso', 'PSO339G4615' => 'pso', 'PSO384G2796' => 'pso', 'PSO384G2940' => 'pso', 'PSO384G4227' => 'pso', 'PSO478G1425' => 'pso', 'PSO541G3863' => 'pso', 'PSO675G0507' => 'pso', 'PSO782G0338' => 'pso', 'PSO832G0644' => 'pso', 'QL01p013664' => 'qlo', 'QL01p036598' => 'qlo', 'QL05p072984' => 'qlo', 'QL08p005768' => 'qlo', 'QL08p032743' => 'qlo', 'QL93p0073_0439' => 'qlo', 'QL93p0073_0444' => 'qlo', 'RcHm_v2.0_Chr5g0002851' => 'rch', 'RcHm_v2.0_Chr5g0055201' => 'rch', 'RcHm_v2.0_Chr5g0061191' => 'rch', 'RcHm_v2.0_Chr7g0203231' => 'rch', 'Rhsim01G0208100' => 'rsi', 'Rhsim01G0208200' => 'rsi', 'Rhsim02G0106500' => 'rsi', 'Rhsim03G0107900' => 'rsi', 'Rhsim06G0163400' => 'rsi', 'Rhsim13G0105200' => 'rsi', 'Sabra04G0006300' => 'sbr', 'Sabra04G0127000' => 'sbr', 'Sabra08G0148700' => 'sbr', 'Sabra09G0117400' => 'sbr', 'SalBow1G3326' => 'sbo', 'SalBow3G3228' => 'sbo', 'SalBow6G1634' => 'sbo', 'SalBow6G3603' => 'sbo', 'SalBow6G5266' => 'sbo', 'SalBow7G2265' => 'sbo', 'SalBow8G0850' => 'sbo', 'SalBow8G2592' => 'sbo', 'Sc05g0009240' => 'sci', 'Sc12g0002300' => 'sci', 'Sc21g0000100' => 'sci', 'Sc21g0004720' => 'sci', 'Sed0002949' => 'sed', 'Sed0004114' => 'sed', 'Sed0004306' => 'sed', 'Sed0006172' => 'sed', 'Sed0008413' => 'sed', 'Sed0013809' => 'sed', 'Sed0019556' => 'sed', 'SEGI_03570' => 'sgi', 'SEGI_07859' => 'sgi', 'SEGI_15042' => 'sgi', 'SEGI_16263' => 'sgi', 'SEGI_16552' => 'sgi', 'SEGI_24331' => 'sgi', 'SEGI_27316' => 'sgi', 'SEGI_29521' => 'sgi', 'SEGI_41342' => 'sgi', 'SGA_v2.0_scaffold27G11617' => 'sas', 'SGA_v2.0_scaffold316G48428' => 'sas', 'SGA_v2.0_scaffold49G18261' => 'sas', 'SGA_v2.0_scaffold7G03831' => 'sas', 'SGA_v2.0_scaffold93G28359' => 'sas', 'SHI02210' => 'shi', 'SHI06028' => 'shi', 'SHI06321' => 'shi', 'SMO111G0012' => 'smo', 'SMO228G0080' => 'smo', 'SMO356G0756' => 'smo', 'Solyc02g080620.3' => 'sly', 'Solyc06g074530.1' => 'sly', 'Solyc11g066890.1' => 'sly', 'Solyc11g072520.3' => 'sly', 'Sopen02g025330' => 'spe', 'Sopen06g031000' => 'spe', 'Sopen09g008240' => 'spe', 'Sopen09g025210' => 'spe', 'Sopen11g026600' => 'spe', 'Sopen11g030170' => 'spe', 'Sp1g10420' => 'spa', 'Sp3g06570' => 'spa', 'Sp4g10660' => 'spa', 'Sp5g16460' => 'spa', 'Sp6g22710' => 'spa', 'TAR365G0112' => 'tar', 'TAR369G0717' => 'tar', 'TAR374G0976' => 'tar', 'TAR623G1128' => 'tar', 'TAR626G1937' => 'tar', 'TAR627G0123' => 'tar', 'TAR628G0305' => 'tar', 'TAR636G1176' => 'tar', 'TAR636G2442' => 'tar', 'THA.LOC104800556' => 'tha', 'THA.LOC104809501' => 'tha', 'THA.LOC104815126' => 'tha', 'THA.LOC104815732' => 'tha', 'THA.LOC104823528' => 'tha', 'Thecc.02G365600' => 'tca', 'Thecc.06G222300' => 'tca', 'Thecc.09G261800' => 'tca', 'Thecc.09G291400' => 'tca', 'Thhalv10003028m.g' => 'esa', 'Thhalv10007886m.g' => 'esa', 'Thhalv10016085m.g' => 'esa', 'Thhalv10016681m.g' => 'esa', 'Thhalv10020951m.g' => 'esa', 'TPR.G15598' => 'tpr', 'TPR.G29305' => 'tpr', 'TPR.G32395' => 'tpr', 'TPR.G36998' => 'tpr', 'TPR.G4227' => 'tpr', 'TWI18G1433' => 'twi', 'TWI31G0755' => 'twi', 'TWI38G0912' => 'twi', 'TWI75G1097' => 'twi', 'TWI75G1619' => 'twi', 'TWI79G1336' => 'twi', 'unitig_0.g943' => 'ugi', 'unitig_0.g944' => 'ugi', 'unitig_22.g6646' => 'ugi', 'unitig_37.g12681' => 'ugi', 'unitig_8.g3290' => 'ugi', 'vmacro03278' => 'vma', 'vmacro12197' => 'vma', 'vmacro14478' => 'vma', 'vmacro15787' => 'vma', 'vmacro15789' => 'vma', 'vmacro15790' => 'vma', 'vmacro15806' => 'vma', 'vmacro22907' => 'vma', 'vmacro22908' => 'vma', 'vmacro22909' => 'vma', 'vmacro23108' => 'vma', 'VMungo0540G0540' => 'vmu', 'VMungo0540G2468' => 'vmu', 'VMungo1080G0390' => 'vmu', 'VMungo1080G1165' => 'vmu', 'VMungo1127G0170' => 'vmu', 'VMungo1127G2099' => 'vmu', 'VMungo1215G3013' => 'vmu', 'Zm00001eb013110' => 'zma', 'Zm00001eb084260' => 'zma', 'Zm00001eb096110' => 'zma', 'Zm00001eb217510' => 'zma', 'Zm00001eb322550' => 'zma', 'Zm00001eb390770' => 'zma', 'Zm00001eb397170' => 'zma', 'Zm00001eb404610' => 'zma', 'Zm00001eb421790' => 'zma' ) $gf_id = 'HOM05D000911' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000911' ) $data_identifier = 'HOM05D000911' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 16, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 5, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 6, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 8, 'nnu' => (int) 16, 'oeu' => (int) 8, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 5, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 16, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421790' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000911', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27780' => 'bna', 'A03p35380' => 'bna', 'A04p21160' => 'bna', 'A05p40570' => 'bna', 'A06p26900' => 'bna', 'A08p33230' => 'bna', 'A09p65960' => 'bna', 'A10p18290' => 'bna', 'Aa31LG1G12990' => 'aar', 'Aa31LG1G2980' => 'aar', 'Aa31LG4G14320' => 'aar', 'Aa31LG7G11800' => 'aar', 'Aa31sc36G50' => 'aar', 'Aa31sc36G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3721' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5459' => 'aag', 'Actinidia03028' => 'ach', 'Actinidia03753' => 'ach', 'Actinidia04187' => 'ach', 'Actinidia05509' => 'ach', 'Actinidia24180' => 'ach', 'Actinidia26906' => 'ach', 'Actinidia37097' => 'ach', 'Actinidia38249' => 'ach', 'Ah.01g003470' => 'amhyb', 'Ah.01g004580' => 'amhyb', 'Ah.01g014850' => 'amhyb', 'Ah.01g016830' => 'amhyb', 'Ah.14g088000' => 'amhyb', 'AL1G22980' => 'aly', 'AL3G18990' => 'aly', 'AL4G22440' => 'aly', 'AL4G33180' => 'aly', 'AL5G22920' => 'aly', 'AL6G33660' => 'aly', 'AL8G20720' => 'aly', 'Aqoxy1G00935' => 'aox', 'Aqoxy1G02094' => 'aox', 'Aqoxy2G01239' => 'aox', 'Aqoxy4G01870' => 'aox', 'Aqoxy7G00450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.36ZVTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71EM27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5D6C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH3WRE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3NCM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RIM768' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YB5YRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z36GDV' => 'arhy', 'AT1G08250' => 'ath', 'AT1G11790' => 'ath', 'AT2G27820' => 'ath', 'AT3G07630' => 'ath', 'AT3G44720' => 'ath', 'AT5G22630' => 'ath', 'ATR0693G304' => 'atr', 'ATR0794G109' => 'atr', 'ATR0820G120' => 'atr', 'ATR1159G064' => 'atr', 'Atru.chr10.2239' => 'acertr', 'Atru.chr3.3371' => 'acertr', 'Atru.chr6.3202' => 'acertr', 'AUR62006499' => 'cqu', 'AUR62012718' => 'cqu', 'AUR62021938' => 'cqu', 'AUR62023932' => 'cqu', 'AUR62025034' => 'cqu', 'AUR62025035' => 'cqu', 'AUR62038307' => 'cqu', 'AUR62043466' => 'cqu', 'BcaB02g10748' => 'bca', 'BcaB03g13231' => 'bca', 'BcaB03g14689' => 'bca', 'BcaB05g22716' => 'bca', 'BcaB06g28172' => 'bca', 'BcaB08g36413' => 'bca', 'BcaC01g02186' => 'bca', 'BcaC01g04272' => 'bca', 'BcaC02g08080' => 'bca', 'BcaC02g08227' => 'bca', 'BcaC03g13901' => 'bca', 'BcaC04g19593' => 'bca', 'BcaC04g20874' => 'bca', 'BcaC05g29557' => 'bca', 'BcaC06g35505' => 'bca', 'BcaC07g41954' => 'bca', 'BcaC07g41955' => 'bca', 'BcaC07g41956' => 'bca', 'BcaC07g42519' => 'bca', 'BcaC07g42520' => 'bca', 'BcaC07g42523' => 'bca', 'BcaC07g42524' => 'bca', 'BcaC07g42525' => 'bca', 'BcaC08g47480' => 'bca', 'BcaC08g47481' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00530' => 'bna', 'BolC2t07178H' => 'bol', 'BolC3t16567H' => 'bol', 'BolC4t27234H' => 'bol', 'BolC5t29728H' => 'bol', 'BolC5t34622H' => 'bol', 'BolC6t40321H' => 'bol', 'BolC7t42028H' => 'bol', 'BolC8t49125H' => 'bol', 'BolC8t52538H' => 'bol', 'BolC8t52539H' => 'bol', 'BolC9t56681H' => 'bol', 'BolC9t58266H' => 'bol', 'BolSC21t60294H' => 'bol', 'BraA02t05670Z' => 'bra', 'BraA03t12716Z' => 'bra', 'BraA04t17685Z' => 'bra', 'BraA05t22788Z' => 'bra', 'BraA06t24032Z' => 'bra', 'BraA06t25625Z' => 'bra', 'BraA07t27930Z' => 'bra', 'BraA08t35242Z' => 'bra', 'BraA09t38609Z' => 'bra', 'BraA10t43905Z' => 'bra', 'C02p11060' => 'bna', 'C03p42990' => 'bna', 'C03p67310' => 'bna', 'C04p56990' => 'bna', 'C04p58660' => 'bna', 'C05p09890' => 'bna', 'C05p59680' => 'bna', 'C06p19830' => 'bna', 'C06p53040' => 'bna', 'C07p15230' => 'bna', 'C08p50070' => 'bna', 'C08p50090' => 'bna', 'C09p38330' => 'bna', 'C09p53940' => 'bna', 'CAN.G1014.1' => 'can', 'CAN.G644.30' => 'can', 'CAN.G84.47' => 'can', 'CAN.G919.8' => 'can', 'CANSAT54G0113' => 'cansat', 'CANSAT54G1286' => 'cansat', 'CANSAT64G1020' => 'cansat', 'CARHR008080' => 'chi', 'CARHR008090' => 'chi', 'CARHR012130' => 'chi', 'CARHR038390' => 'chi', 'CARHR082330' => 'chi', 'CARHR120520' => 'chi', 'CARHR151470' => 'chi', 'CARHR190950' => 'chi', 'Carub.0001s0760' => 'cru', 'Carub.0001s1146' => 'cru', 'Carub.0003s0721' => 'cru', 'Carub.0004s0858' => 'cru', 'Carub.0005s1040' => 'cru', 'Carub.0006s2035' => 'cru', 'Carub.0015s0005' => 'cru', 'Ca_01607_v3' => 'car', 'Ca_01677_v3' => 'car', 'Ca_06087_v3' => 'car', 'Ca_19238_v3' => 'car', 'Ca_19373_v3' => 'car', 'Ca_21079_v3' => 'car', 'CBR_g54016' => 'cbr', 'CBR_g54018' => 'cbr', 'CBR_g54020' => 'cbr', 'Cc01_g09780' => 'ccan', 'Cc01_g11680' => 'ccan', 'Cc02_g15610' => 'ccan', 'Cc05_g04350' => 'ccan', 'Cc09_g01580' => 'ccan', 'CDE01G0795' => 'cde', 'CDE02G2024' => 'cde', 'CDE02G2260' => 'cde', 'CDE02G4561' => 'cde', 'CDE05G2733' => 'cde', 'CDE05G3422' => 'cde', 'CDE06G2003' => 'cde', 'CDE08G0576' => 'cde', 'CDE09G0048' => 'cde', 'CDE11G0805' => 'cde', 'Cfa003644' => 'cfa', 'Cfa006290' => 'cfa', 'Cfa010080' => 'cfa', 'Cfa011376' => 'cfa', 'Cfa011576' => 'cfa', 'Cfa011577' => 'cfa', 'Cfa014389' => 'cfa', 'Ciclev10006044m.g' => 'ccl', 'Ciclev10006954m.g' => 'ccl', 'Ciclev10015131m.g' => 'ccl', 'Ciclev10015580m.g' => 'ccl', 'Ciclev10028359m.g' => 'ccl', 'Ciclev10028573m.g' => 'ccl', 'CiPaw.03G159300' => 'cil', 'CiPaw.04G115100' => 'cil', 'CiPaw.09G092800' => 'cil', 'CiPaw.10G071800' => 'cil', 'CiPaw.13G105800' => 'cil', 'CiPaw.13G141000' => 'cil', 'CiPaw.14G103400' => 'cil', 'ClCG01G012700' => 'cla', 'ClCG01G012720' => 'cla', 'ClCG01G021920' => 'cla', 'ClCG02G008870' => 'cla', 'ClCG02G020840' => 'cla', 'ClCG02G021930' => 'cla', 'COL.COLO4_19302' => 'col', 'COL.COLO4_25262' => 'col', 'COL.COLO4_31788' => 'col', 'Cpa.g.c34684' => 'cpa', 'Cpa.g.c36520.1' => 'cpa', 'Cpa.g.c45626' => 'cpa', 'Cpa.g.sc121.17' => 'cpa', 'Cpa.g.sc13.22' => 'cpa', 'Cpa.g.sc87.88' => 'cpa', 'Cre06.g261800' => 'cre', 'CsaV3_1G014500' => 'csa', 'CsaV3_1G014510' => 'csa', 'CsaV3_2G034880' => 'csa', 'CsaV3_6G014760' => 'csa', 'CsaV3_6G021500' => 'csa', 'CsaV3_6G048980' => 'csa', 'CSS0002511' => 'camsi', 'CSS0007556' => 'camsi', 'CSS0008532' => 'camsi', 'CSS0009709' => 'camsi', 'CSS0010486' => 'camsi', 'CSS0016768' => 'camsi', 'CSS0023512' => 'camsi', 'CSS0025341' => 'camsi', 'CSS0027999' => 'camsi', 'CSS0028944' => 'camsi', 'CSS0032292' => 'camsi', 'CSS0032464' => 'camsi', 'CSS0037153' => 'camsi', 'CSS0039256' => 'camsi', 'CSS0048392' => 'camsi', 'CSS0050458' => 'camsi', 'DCAR_004224' => 'dca', 'DCAR_006147' => 'dca', 'DCAR_006465' => 'dca', 'DCAR_008159' => 'dca', 'DCAR_012164' => 'dca', 'DCAR_019764' => 'dca', 'Dinv05418' => 'din', 'Dinv10839' => 'din', 'Dinv12521' => 'din', 'Dinv13900' => 'din', 'Dinv29426' => 'din', 'Duzib150G0263' => 'dzi', 'Duzib168G1178' => 'dzi', 'Duzib168G1924' => 'dzi', 'Duzib170G0299' => 'dzi', 'Duzib170G0813' => 'dzi', 'Duzib235G1128' => 'dzi', 'Duzib248G1060' => 'dzi', 'ECA232G1910' => 'eca', 'ECA233G4621' => 'eca', 'ECA238G1216' => 'eca', 'ECA238G1784' => 'eca', 'ECA248G1242' => 'eca', 'EL10Ac8g20071' => 'bvu', 'EL10Ac9g21086' => 'bvu', 'EL10Ac9g22407' => 'bvu', 'EL10Ac9g22412' => 'bvu', 'Eucgr.A01119' => 'egr', 'Eucgr.E04043' => 'egr', 'Eucgr.J00428' => 'egr', 'Eucgr.J00958' => 'egr', 'FAN11G3091' => 'fan', 'FAN11G3651' => 'fan', 'FAN16G2566' => 'fan', 'FAN21G3155' => 'fan', 'FAN21G3400' => 'fan', 'FAN21G3543' => 'fan', 'FAN25G0234' => 'fan', 'FAN25G1422' => 'fan', 'FAN25G3392' => 'fan', 'FvH4_3g01940' => 'fve', 'FvH4_3g29870' => 'fve', 'FvH4_3g33680' => 'fve', 'Glyma.09G004200' => 'gma', 'Glyma.11G151288' => 'gma', 'Glyma.11G189100' => 'gma', 'Glyma.12G072500' => 'gma', 'Glyma.12G085500' => 'gma', 'Glyma.12G181800' => 'gma', 'Glyma.12G193000' => 'gma', 'Glyma.13G309300' => 'gma', 'Glyma.13G319000' => 'gma', 'Glyma.17G012600' => 'gma', 'Gohir.A06G148600' => 'ghi', 'Gohir.A07G115800' => 'ghi', 'Gohir.A08G003600' => 'ghi', 'Gohir.A09G093300' => 'ghi', 'Gohir.A09G105400' => 'ghi', 'Gohir.A09G105500' => 'ghi', 'Gohir.D06G154600' => 'ghi', 'Gohir.D07G120200' => 'ghi', 'Gohir.D08G013900' => 'ghi', 'Gohir.D09G093100' => 'ghi', 'Gohir.D09G102200' => 'ghi', 'Gohir.D09G102300' => 'ghi', 'Gorai.001G129400' => 'gra', 'Gorai.004G008200' => 'gra', 'Gorai.006G109800' => 'gra', 'Gorai.006G119500' => 'gra', 'Gorai.006G121300' => 'gra', 'Gorai.010G180700' => 'gra', 'GSVIVG01012716001' => 'vvi', 'GSVIVG01025118001' => 'vvi', 'GSVIVG01030439001' => 'vvi', 'GSVIVG01031397001' => 'vvi', 'HanXRQChr01g0004201' => 'han', 'HanXRQChr02g0054941' => 'han', 'HanXRQChr05g0141811' => 'han', 'HanXRQChr07g0197751' => 'han', 'HanXRQChr11g0346691' => 'han', 'HanXRQChr13g0396971' => 'han', 'HanXRQChr14g0432951' => 'han', 'HanXRQChr14g0452001' => 'han', 'HanXRQChr15g0496681' => 'han', 'HanXRQChr17g0557491' => 'han', 'HanXRQChr17g0557501' => 'han', 'Haze_06809' => 'cav', 'Haze_12852' => 'cav', 'Haze_15850' => 'cav', 'Haze_23446' => 'cav', 'Haze_23942' => 'cav', 'Haze_23943' => 'cav', 'Hma1.2p1_0091F.1_g046450' => 'hma', 'Hma1.2p1_0128F.1_g059910' => 'hma', 'Hma1.2p1_0249F.1_g102260' => 'hma', 'Hma1.2p1_0453F.1_g156190' => 'hma', 'Hma1.2p1_0695F.1_g204380' => 'hma', 'Hma1.2p1_0749F.1_g212650' => 'hma', 'Hma1.2p1_2156F.1_g315420' => 'hma', 'Hma1.2p1_2686F.1_g326940' => 'hma', 'HPP92_006428' => 'vpl', 'HPP92_012069' => 'vpl', 'HPP92_014129' => 'vpl', 'HPP92_014133' => 'vpl', 'HPP92_017315' => 'vpl', 'HPP92_026445' => 'vpl', 'HPP92_026446' => 'vpl', 'Hund00774' => 'sun', 'Hund07682' => 'sun', 'Hund21413' => 'sun', 'Hund23462' => 'sun', 'Hund23463' => 'sun', 'Lalb_Chr03g0027911' => 'lal', 'Lalb_Chr13g0304271' => 'lal', 'Lalb_Chr19g0137471' => 'lal', 'Lalb_Chr22g0350651' => 'lal', 'Lalb_Chr24g0395151' => 'lal', 'Lj1A1231T40' => 'lonja', 'Lj1A221T48' => 'lonja', 'Lj1C924T12' => 'lonja', 'Lj2C993G6' => 'lonja', 'Lj3g0005790' => 'lja', 'Lj3g0015432' => 'lja', 'Lj3g0017722' => 'lja', 'Lj3g0018497' => 'lja', 'Lj4g0025071' => 'lja', 'Lsat_1_v5_gn_1_129680' => 'lsa', 'Lsat_1_v5_gn_2_25321' => 'lsa', 'Lsat_1_v5_gn_2_95461' => 'lsa', 'Lsat_1_v5_gn_4_159620' => 'lsa', 'Lsat_1_v5_gn_6_41301' => 'lsa', 'Lsat_1_v5_gn_6_74660' => 'lsa', 'Lsat_1_v5_gn_7_11520' => 'lsa', 'Lsat_1_v5_gn_9_67680' => 'lsa', 'Manes.04G008300' => 'mes', 'Manes.04G008400' => 'mes', 'Manes.04G026500' => 'mes', 'Manes.10G135300' => 'mes', 'Manes.11G157300' => 'mes', 'Manes.12G074000' => 'mes', 'Manes.16G006200' => 'mes', 'Manes.17G026400' => 'mes', 'Mapoly0024s0086' => 'mpo', 'Mapoly0024s0087' => 'mpo', 'Mapoly0071s0057' => 'mpo', 'Mapoly0204s0012' => 'mpo', 'MBI04_g37681_MAGBIO' => 'mbi', 'MBI05_g17779_MAGBIO' => 'mbi', 'MBI12_g31184_MAGBIO' => 'mbi', 'MBI17_g11083_MAGBIO' => 'mbi', 'MBI18_g03883_MAGBIO' => 'mbi', 'MBI18_g28940_MAGBIO' => 'mbi', 'MCO01G690' => 'mco', 'MD03G1109900' => 'mdo', 'MD03G1134800' => 'mdo', 'MD05G1348000' => 'mdo', 'MD10G1322400' => 'mdo', 'MD11G1123300' => 'mdo', 'MD11G1157600' => 'mdo', 'Medtr2g084875' => 'mtr', 'Medtr2g088130' => 'mtr', 'Medtr4g055310' => 'mtr', 'Medtr4g061070' => 'mtr', 'Medtr4g132250' => 'mtr', 'MELO3C004795.2' => 'cme', 'MELO3C004797.2' => 'cme', 'MELO3C007396.2' => 'cme', 'MELO3C019277.2' => 'cme', 'MELO3C021449.2' => 'cme', 'MELO3C025736.2' => 'cme', 'Migut.D02175' => 'egut', 'Migut.H01573' => 'egut', 'Migut.M01327' => 'egut', 'Migut.N02513' => 'egut', 'MSTRG.14638' => 'ama', 'MSTRG.18632' => 'ama', 'MSTRG.7203' => 'ama', 'Nitab4.5_0000533g0140' => 'nta', 'Nitab4.5_0000888g0150' => 'nta', 'Nitab4.5_0001453g0040' => 'nta', 'Nitab4.5_0002827g0090' => 'nta', 'Nitab4.5_0003082g0040' => 'nta', 'Nitab4.5_0007799g0040' => 'nta', 'Nitab4.5_0008983g0010' => 'nta', 'Nitab4.5_0009017g0020' => 'nta', 'Nn1g02132' => 'nnu', 'Nn1g03492' => 'nnu', 'Nn1g03493' => 'nnu', 'Nn1g03494' => 'nnu', 'Nn1g07164' => 'nnu', 'Nn1g07291' => 'nnu', 'Nn2g10655' => 'nnu', 'Nn2g11652' => 'nnu', 'Nn2g14008' => 'nnu', 'Nn3g17476' => 'nnu', 'Nn3g17477' => 'nnu', 'Nn4g22370' => 'nnu', 'Nn4g25255' => 'nnu', 'Nn5g27755' => 'nnu', 'Nn6g34260' => 'nnu', 'Nn6g35041' => 'nnu', 'Oeu005924.1' => 'oeu', 'Oeu008383.1' => 'oeu', 'Oeu014928.1' => 'oeu', 'Oeu019889.1' => 'oeu', 'Oeu022271.1' => 'oeu', 'Oeu025271.1' => 'oeu', 'Oeu036302.1' => 'oeu', 'Oeu044100.1' => 'oeu', 'Os01g0528300' => 'osa', 'Os03g0286200' => 'osa', 'Os04g0406600' => 'osa', 'Os07g0512000' => 'osa', 'Os07g0694600' => 'osa', 'Os08g0411000' => 'osa', 'Os09g0565700' => 'osa', 'Os09g0566050' => 'osa', 'Os10g0523700' => 'osa', 'Peaxi162Scf00002g00514' => 'pax', 'Peaxi162Scf00047g01817' => 'pax', 'Peaxi162Scf00114g00001' => 'pax', 'Peaxi162Scf00147g00613' => 'pax', 'Peaxi162Scf00389g00425' => 'pax', 'PGR042G1139' => 'pgr', 'PGR042G3273' => 'pgr', 'PGR102G2180' => 'pgr', 'PGR119G0234' => 'pgr', 'PGR119G0668' => 'pgr', 'PGSC0003DMG400007122' => 'stu', 'PGSC0003DMG400016478' => 'stu', 'PGSC0003DMG400025374' => 'stu', 'PGSC0003DMG400026536' => 'stu', 'Phvul.003G079600' => 'pvu', 'Phvul.005G115600' => 'pvu', 'Phvul.005G127100' => 'pvu', 'Phvul.006G149500' => 'pvu', 'Phvul.006G149600' => 'pvu', 'Phvul.011G071800' => 'pvu', 'Phvul.011G090400' => 'pvu', 'Potri.004G013400' => 'ptr', 'Potri.004G188100' => 'ptr', 'Potri.008G195500' => 'ptr', 'Potri.009G148800' => 'ptr', 'Potri.011G004700' => 'ptr', 'Pp3c17_22810' => 'ppa', 'Pp3c18_4480' => 'ppa', 'Pp3c19_13030' => 'ppa', 'Pp3c1_33620' => 'ppa', 'Pp3c2_9380' => 'ppa', 'PRCOL_00001023' => 'pco', 'Prupe.3G216300' => 'ppe', 'Prupe.4G019500' => 'ppe', 'Prupe.6G092500' => 'ppe', 'Prupe.6G119200' => 'ppe', 'Psat0s1945g0080' => 'psa', 'Psat0s4167g0040' => 'psa', 'Psat1g185800' => 'psa', 'Psat4g006440' => 'psa', 'Psat4g006480' => 'psa', 'Psat4g168120' => 'psa', 'Psat5g255680' => 'psa', 'Psat5g261760' => 'psa', 'Psat7g222120' => 'psa', 'PSO063G7252' => 'pso', 'PSO170G4778' => 'pso', 'PSO210G2249' => 'pso', 'PSO339G2411' => 'pso', 'PSO339G2457' => 'pso', 'PSO339G2854' => 'pso', 'PSO339G4288' => 'pso', 'PSO339G4615' => 'pso', 'PSO384G2796' => 'pso', 'PSO384G2940' => 'pso', 'PSO384G4227' => 'pso', 'PSO478G1425' => 'pso', 'PSO541G3863' => 'pso', 'PSO675G0507' => 'pso', 'PSO782G0338' => 'pso', 'PSO832G0644' => 'pso', 'QL01p013664' => 'qlo', 'QL01p036598' => 'qlo', 'QL05p072984' => 'qlo', 'QL08p005768' => 'qlo', 'QL08p032743' => 'qlo', 'QL93p0073_0439' => 'qlo', 'QL93p0073_0444' => 'qlo', 'RcHm_v2.0_Chr5g0002851' => 'rch', 'RcHm_v2.0_Chr5g0055201' => 'rch', 'RcHm_v2.0_Chr5g0061191' => 'rch', 'RcHm_v2.0_Chr7g0203231' => 'rch', 'Rhsim01G0208100' => 'rsi', 'Rhsim01G0208200' => 'rsi', 'Rhsim02G0106500' => 'rsi', 'Rhsim03G0107900' => 'rsi', 'Rhsim06G0163400' => 'rsi', 'Rhsim13G0105200' => 'rsi', 'Sabra04G0006300' => 'sbr', 'Sabra04G0127000' => 'sbr', 'Sabra08G0148700' => 'sbr', 'Sabra09G0117400' => 'sbr', 'SalBow1G3326' => 'sbo', 'SalBow3G3228' => 'sbo', 'SalBow6G1634' => 'sbo', 'SalBow6G3603' => 'sbo', 'SalBow6G5266' => 'sbo', 'SalBow7G2265' => 'sbo', 'SalBow8G0850' => 'sbo', 'SalBow8G2592' => 'sbo', 'Sc05g0009240' => 'sci', 'Sc12g0002300' => 'sci', 'Sc21g0000100' => 'sci', 'Sc21g0004720' => 'sci', 'Sed0002949' => 'sed', 'Sed0004114' => 'sed', 'Sed0004306' => 'sed', 'Sed0006172' => 'sed', 'Sed0008413' => 'sed', 'Sed0013809' => 'sed', 'Sed0019556' => 'sed', 'SEGI_03570' => 'sgi', 'SEGI_07859' => 'sgi', 'SEGI_15042' => 'sgi', 'SEGI_16263' => 'sgi', 'SEGI_16552' => 'sgi', 'SEGI_24331' => 'sgi', 'SEGI_27316' => 'sgi', 'SEGI_29521' => 'sgi', 'SEGI_41342' => 'sgi', 'SGA_v2.0_scaffold27G11617' => 'sas', 'SGA_v2.0_scaffold316G48428' => 'sas', 'SGA_v2.0_scaffold49G18261' => 'sas', 'SGA_v2.0_scaffold7G03831' => 'sas', 'SGA_v2.0_scaffold93G28359' => 'sas', 'SHI02210' => 'shi', 'SHI06028' => 'shi', 'SHI06321' => 'shi', 'SMO111G0012' => 'smo', 'SMO228G0080' => 'smo', 'SMO356G0756' => 'smo', 'Solyc02g080620.3' => 'sly', 'Solyc06g074530.1' => 'sly', 'Solyc11g066890.1' => 'sly', 'Solyc11g072520.3' => 'sly', 'Sopen02g025330' => 'spe', 'Sopen06g031000' => 'spe', 'Sopen09g008240' => 'spe', 'Sopen09g025210' => 'spe', 'Sopen11g026600' => 'spe', 'Sopen11g030170' => 'spe', 'Sp1g10420' => 'spa', 'Sp3g06570' => 'spa', 'Sp4g10660' => 'spa', 'Sp5g16460' => 'spa', 'Sp6g22710' => 'spa', 'TAR365G0112' => 'tar', 'TAR369G0717' => 'tar', 'TAR374G0976' => 'tar', 'TAR623G1128' => 'tar', 'TAR626G1937' => 'tar', 'TAR627G0123' => 'tar', 'TAR628G0305' => 'tar', 'TAR636G1176' => 'tar', 'TAR636G2442' => 'tar', 'THA.LOC104800556' => 'tha', 'THA.LOC104809501' => 'tha', 'THA.LOC104815126' => 'tha', 'THA.LOC104815732' => 'tha', 'THA.LOC104823528' => 'tha', 'Thecc.02G365600' => 'tca', 'Thecc.06G222300' => 'tca', 'Thecc.09G261800' => 'tca', 'Thecc.09G291400' => 'tca', 'Thhalv10003028m.g' => 'esa', 'Thhalv10007886m.g' => 'esa', 'Thhalv10016085m.g' => 'esa', 'Thhalv10016681m.g' => 'esa', 'Thhalv10020951m.g' => 'esa', 'TPR.G15598' => 'tpr', 'TPR.G29305' => 'tpr', 'TPR.G32395' => 'tpr', 'TPR.G36998' => 'tpr', 'TPR.G4227' => 'tpr', 'TWI18G1433' => 'twi', 'TWI31G0755' => 'twi', 'TWI38G0912' => 'twi', 'TWI75G1097' => 'twi', 'TWI75G1619' => 'twi', 'TWI79G1336' => 'twi', 'unitig_0.g943' => 'ugi', 'unitig_0.g944' => 'ugi', 'unitig_22.g6646' => 'ugi', 'unitig_37.g12681' => 'ugi', 'unitig_8.g3290' => 'ugi', 'vmacro03278' => 'vma', 'vmacro12197' => 'vma', 'vmacro14478' => 'vma', 'vmacro15787' => 'vma', 'vmacro15789' => 'vma', 'vmacro15790' => 'vma', 'vmacro15806' => 'vma', 'vmacro22907' => 'vma', 'vmacro22908' => 'vma', 'vmacro22909' => 'vma', 'vmacro23108' => 'vma', 'VMungo0540G0540' => 'vmu', 'VMungo0540G2468' => 'vmu', 'VMungo1080G0390' => 'vmu', 'VMungo1080G1165' => 'vmu', 'VMungo1127G0170' => 'vmu', 'VMungo1127G2099' => 'vmu', 'VMungo1215G3013' => 'vmu', 'Zm00001eb013110' => 'zma', 'Zm00001eb084260' => 'zma', 'Zm00001eb096110' => 'zma', 'Zm00001eb217510' => 'zma', 'Zm00001eb322550' => 'zma', 'Zm00001eb390770' => 'zma', 'Zm00001eb397170' => 'zma', 'Zm00001eb404610' => 'zma', 'Zm00001eb421790' => 'zma' ), 'gf_id' => 'HOM05D000911', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000911' ), 'data_identifier' => 'HOM05D000911', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000911', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27780' => 'bna', 'A03p35380' => 'bna', 'A04p21160' => 'bna', 'A05p40570' => 'bna', 'A06p26900' => 'bna', 'A08p33230' => 'bna', 'A09p65960' => 'bna', 'A10p18290' => 'bna', 'Aa31LG1G12990' => 'aar', 'Aa31LG1G2980' => 'aar', 'Aa31LG4G14320' => 'aar', 'Aa31LG7G11800' => 'aar', 'Aa31sc36G50' => 'aar', 'Aa31sc36G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3721' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5459' => 'aag', 'Actinidia03028' => 'ach', 'Actinidia03753' => 'ach', 'Actinidia04187' => 'ach', 'Actinidia05509' => 'ach', 'Actinidia24180' => 'ach', 'Actinidia26906' => 'ach', 'Actinidia37097' => 'ach', 'Actinidia38249' => 'ach', 'Ah.01g003470' => 'amhyb', 'Ah.01g004580' => 'amhyb', 'Ah.01g014850' => 'amhyb', 'Ah.01g016830' => 'amhyb', 'Ah.14g088000' => 'amhyb', 'AL1G22980' => 'aly', 'AL3G18990' => 'aly', 'AL4G22440' => 'aly', 'AL4G33180' => 'aly', 'AL5G22920' => 'aly', 'AL6G33660' => 'aly', 'AL8G20720' => 'aly', 'Aqoxy1G00935' => 'aox', 'Aqoxy1G02094' => 'aox', 'Aqoxy2G01239' => 'aox', 'Aqoxy4G01870' => 'aox', 'Aqoxy7G00450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.36ZVTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71EM27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5D6C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH3WRE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3NCM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RIM768' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YB5YRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z36GDV' => 'arhy', 'AT1G08250' => 'ath', 'AT1G11790' => 'ath', 'AT2G27820' => 'ath', 'AT3G07630' => 'ath', 'AT3G44720' => 'ath', 'AT5G22630' => 'ath', 'ATR0693G304' => 'atr', 'ATR0794G109' => 'atr', 'ATR0820G120' => 'atr', 'ATR1159G064' => 'atr', 'Atru.chr10.2239' => 'acertr', 'Atru.chr3.3371' => 'acertr', 'Atru.chr6.3202' => 'acertr', 'AUR62006499' => 'cqu', 'AUR62012718' => 'cqu', 'AUR62021938' => 'cqu', 'AUR62023932' => 'cqu', 'AUR62025034' => 'cqu', 'AUR62025035' => 'cqu', 'AUR62038307' => 'cqu', 'AUR62043466' => 'cqu', 'BcaB02g10748' => 'bca', 'BcaB03g13231' => 'bca', 'BcaB03g14689' => 'bca', 'BcaB05g22716' => 'bca', 'BcaB06g28172' => 'bca', 'BcaB08g36413' => 'bca', 'BcaC01g02186' => 'bca', 'BcaC01g04272' => 'bca', 'BcaC02g08080' => 'bca', 'BcaC02g08227' => 'bca', 'BcaC03g13901' => 'bca', 'BcaC04g19593' => 'bca', 'BcaC04g20874' => 'bca', 'BcaC05g29557' => 'bca', 'BcaC06g35505' => 'bca', 'BcaC07g41954' => 'bca', 'BcaC07g41955' => 'bca', 'BcaC07g41956' => 'bca', 'BcaC07g42519' => 'bca', 'BcaC07g42520' => 'bca', 'BcaC07g42523' => 'bca', 'BcaC07g42524' => 'bca', 'BcaC07g42525' => 'bca', 'BcaC08g47480' => 'bca', 'BcaC08g47481' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00530' => 'bna', 'BolC2t07178H' => 'bol', 'BolC3t16567H' => 'bol', 'BolC4t27234H' => 'bol', 'BolC5t29728H' => 'bol', 'BolC5t34622H' => 'bol', 'BolC6t40321H' => 'bol', 'BolC7t42028H' => 'bol', 'BolC8t49125H' => 'bol', 'BolC8t52538H' => 'bol', 'BolC8t52539H' => 'bol', 'BolC9t56681H' => 'bol', 'BolC9t58266H' => 'bol', 'BolSC21t60294H' => 'bol', 'BraA02t05670Z' => 'bra', 'BraA03t12716Z' => 'bra', 'BraA04t17685Z' => 'bra', 'BraA05t22788Z' => 'bra', 'BraA06t24032Z' => 'bra', 'BraA06t25625Z' => 'bra', 'BraA07t27930Z' => 'bra', 'BraA08t35242Z' => 'bra', 'BraA09t38609Z' => 'bra', 'BraA10t43905Z' => 'bra', 'C02p11060' => 'bna', 'C03p42990' => 'bna', 'C03p67310' => 'bna', 'C04p56990' => 'bna', 'C04p58660' => 'bna', 'C05p09890' => 'bna', 'C05p59680' => 'bna', 'C06p19830' => 'bna', 'C06p53040' => 'bna', 'C07p15230' => 'bna', 'C08p50070' => 'bna', 'C08p50090' => 'bna', 'C09p38330' => 'bna', 'C09p53940' => 'bna', 'CAN.G1014.1' => 'can', 'CAN.G644.30' => 'can', 'CAN.G84.47' => 'can', 'CAN.G919.8' => 'can', 'CANSAT54G0113' => 'cansat', 'CANSAT54G1286' => 'cansat', 'CANSAT64G1020' => 'cansat', 'CARHR008080' => 'chi', 'CARHR008090' => 'chi', 'CARHR012130' => 'chi', 'CARHR038390' => 'chi', 'CARHR082330' => 'chi', 'CARHR120520' => 'chi', 'CARHR151470' => 'chi', 'CARHR190950' => 'chi', 'Carub.0001s0760' => 'cru', 'Carub.0001s1146' => 'cru', 'Carub.0003s0721' => 'cru', 'Carub.0004s0858' => 'cru', 'Carub.0005s1040' => 'cru', 'Carub.0006s2035' => 'cru', 'Carub.0015s0005' => 'cru', 'Ca_01607_v3' => 'car', 'Ca_01677_v3' => 'car', 'Ca_06087_v3' => 'car', 'Ca_19238_v3' => 'car', 'Ca_19373_v3' => 'car', 'Ca_21079_v3' => 'car', 'CBR_g54016' => 'cbr', 'CBR_g54018' => 'cbr', 'CBR_g54020' => 'cbr', 'Cc01_g09780' => 'ccan', 'Cc01_g11680' => 'ccan', 'Cc02_g15610' => 'ccan', 'Cc05_g04350' => 'ccan', 'Cc09_g01580' => 'ccan', 'CDE01G0795' => 'cde', 'CDE02G2024' => 'cde', 'CDE02G2260' => 'cde', 'CDE02G4561' => 'cde', 'CDE05G2733' => 'cde', 'CDE05G3422' => 'cde', 'CDE06G2003' => 'cde', 'CDE08G0576' => 'cde', 'CDE09G0048' => 'cde', 'CDE11G0805' => 'cde', 'Cfa003644' => 'cfa', 'Cfa006290' => 'cfa', 'Cfa010080' => 'cfa', 'Cfa011376' => 'cfa', 'Cfa011576' => 'cfa', 'Cfa011577' => 'cfa', 'Cfa014389' => 'cfa', 'Ciclev10006044m.g' => 'ccl', 'Ciclev10006954m.g' => 'ccl', 'Ciclev10015131m.g' => 'ccl', 'Ciclev10015580m.g' => 'ccl', 'Ciclev10028359m.g' => 'ccl', 'Ciclev10028573m.g' => 'ccl', 'CiPaw.03G159300' => 'cil', 'CiPaw.04G115100' => 'cil', 'CiPaw.09G092800' => 'cil', 'CiPaw.10G071800' => 'cil', 'CiPaw.13G105800' => 'cil', 'CiPaw.13G141000' => 'cil', 'CiPaw.14G103400' => 'cil', 'ClCG01G012700' => 'cla', 'ClCG01G012720' => 'cla', 'ClCG01G021920' => 'cla', 'ClCG02G008870' => 'cla', 'ClCG02G020840' => 'cla', 'ClCG02G021930' => 'cla', 'COL.COLO4_19302' => 'col', 'COL.COLO4_25262' => 'col', 'COL.COLO4_31788' => 'col', 'Cpa.g.c34684' => 'cpa', 'Cpa.g.c36520.1' => 'cpa', 'Cpa.g.c45626' => 'cpa', 'Cpa.g.sc121.17' => 'cpa', 'Cpa.g.sc13.22' => 'cpa', 'Cpa.g.sc87.88' => 'cpa', 'Cre06.g261800' => 'cre', 'CsaV3_1G014500' => 'csa', 'CsaV3_1G014510' => 'csa', 'CsaV3_2G034880' => 'csa', 'CsaV3_6G014760' => 'csa', 'CsaV3_6G021500' => 'csa', 'CsaV3_6G048980' => 'csa', 'CSS0002511' => 'camsi', 'CSS0007556' => 'camsi', 'CSS0008532' => 'camsi', 'CSS0009709' => 'camsi', 'CSS0010486' => 'camsi', 'CSS0016768' => 'camsi', 'CSS0023512' => 'camsi', 'CSS0025341' => 'camsi', 'CSS0027999' => 'camsi', 'CSS0028944' => 'camsi', 'CSS0032292' => 'camsi', 'CSS0032464' => 'camsi', 'CSS0037153' => 'camsi', 'CSS0039256' => 'camsi', 'CSS0048392' => 'camsi', 'CSS0050458' => 'camsi', 'DCAR_004224' => 'dca', 'DCAR_006147' => 'dca', 'DCAR_006465' => 'dca', 'DCAR_008159' => 'dca', 'DCAR_012164' => 'dca', 'DCAR_019764' => 'dca', 'Dinv05418' => 'din', 'Dinv10839' => 'din', 'Dinv12521' => 'din', 'Dinv13900' => 'din', 'Dinv29426' => 'din', 'Duzib150G0263' => 'dzi', 'Duzib168G1178' => 'dzi', 'Duzib168G1924' => 'dzi', 'Duzib170G0299' => 'dzi', 'Duzib170G0813' => 'dzi', 'Duzib235G1128' => 'dzi', 'Duzib248G1060' => 'dzi', 'ECA232G1910' => 'eca', 'ECA233G4621' => 'eca', 'ECA238G1216' => 'eca', 'ECA238G1784' => 'eca', 'ECA248G1242' => 'eca', 'EL10Ac8g20071' => 'bvu', 'EL10Ac9g21086' => 'bvu', 'EL10Ac9g22407' => 'bvu', 'EL10Ac9g22412' => 'bvu', 'Eucgr.A01119' => 'egr', 'Eucgr.E04043' => 'egr', 'Eucgr.J00428' => 'egr', 'Eucgr.J00958' => 'egr', 'FAN11G3091' => 'fan', 'FAN11G3651' => 'fan', 'FAN16G2566' => 'fan', 'FAN21G3155' => 'fan', 'FAN21G3400' => 'fan', 'FAN21G3543' => 'fan', 'FAN25G0234' => 'fan', 'FAN25G1422' => 'fan', 'FAN25G3392' => 'fan', 'FvH4_3g01940' => 'fve', 'FvH4_3g29870' => 'fve', 'FvH4_3g33680' => 'fve', 'Glyma.09G004200' => 'gma', 'Glyma.11G151288' => 'gma', 'Glyma.11G189100' => 'gma', 'Glyma.12G072500' => 'gma', 'Glyma.12G085500' => 'gma', 'Glyma.12G181800' => 'gma', 'Glyma.12G193000' => 'gma', 'Glyma.13G309300' => 'gma', 'Glyma.13G319000' => 'gma', 'Glyma.17G012600' => 'gma', 'Gohir.A06G148600' => 'ghi', 'Gohir.A07G115800' => 'ghi', 'Gohir.A08G003600' => 'ghi', 'Gohir.A09G093300' => 'ghi', 'Gohir.A09G105400' => 'ghi', 'Gohir.A09G105500' => 'ghi', 'Gohir.D06G154600' => 'ghi', 'Gohir.D07G120200' => 'ghi', 'Gohir.D08G013900' => 'ghi', 'Gohir.D09G093100' => 'ghi', 'Gohir.D09G102200' => 'ghi', 'Gohir.D09G102300' => 'ghi', 'Gorai.001G129400' => 'gra', 'Gorai.004G008200' => 'gra', 'Gorai.006G109800' => 'gra', 'Gorai.006G119500' => 'gra', 'Gorai.006G121300' => 'gra', 'Gorai.010G180700' => 'gra', 'GSVIVG01012716001' => 'vvi', 'GSVIVG01025118001' => 'vvi', 'GSVIVG01030439001' => 'vvi', 'GSVIVG01031397001' => 'vvi', 'HanXRQChr01g0004201' => 'han', 'HanXRQChr02g0054941' => 'han', 'HanXRQChr05g0141811' => 'han', 'HanXRQChr07g0197751' => 'han', 'HanXRQChr11g0346691' => 'han', 'HanXRQChr13g0396971' => 'han', 'HanXRQChr14g0432951' => 'han', 'HanXRQChr14g0452001' => 'han', 'HanXRQChr15g0496681' => 'han', 'HanXRQChr17g0557491' => 'han', 'HanXRQChr17g0557501' => 'han', 'Haze_06809' => 'cav', 'Haze_12852' => 'cav', 'Haze_15850' => 'cav', 'Haze_23446' => 'cav', 'Haze_23942' => 'cav', 'Haze_23943' => 'cav', 'Hma1.2p1_0091F.1_g046450' => 'hma', 'Hma1.2p1_0128F.1_g059910' => 'hma', 'Hma1.2p1_0249F.1_g102260' => 'hma', 'Hma1.2p1_0453F.1_g156190' => 'hma', 'Hma1.2p1_0695F.1_g204380' => 'hma', 'Hma1.2p1_0749F.1_g212650' => 'hma', 'Hma1.2p1_2156F.1_g315420' => 'hma', 'Hma1.2p1_2686F.1_g326940' => 'hma', 'HPP92_006428' => 'vpl', 'HPP92_012069' => 'vpl', 'HPP92_014129' => 'vpl', 'HPP92_014133' => 'vpl', 'HPP92_017315' => 'vpl', 'HPP92_026445' => 'vpl', 'HPP92_026446' => 'vpl', 'Hund00774' => 'sun', 'Hund07682' => 'sun', 'Hund21413' => 'sun', 'Hund23462' => 'sun', 'Hund23463' => 'sun', 'Lalb_Chr03g0027911' => 'lal', 'Lalb_Chr13g0304271' => 'lal', 'Lalb_Chr19g0137471' => 'lal', 'Lalb_Chr22g0350651' => 'lal', 'Lalb_Chr24g0395151' => 'lal', 'Lj1A1231T40' => 'lonja', 'Lj1A221T48' => 'lonja', 'Lj1C924T12' => 'lonja', 'Lj2C993G6' => 'lonja', 'Lj3g0005790' => 'lja', 'Lj3g0015432' => 'lja', 'Lj3g0017722' => 'lja', 'Lj3g0018497' => 'lja', 'Lj4g0025071' => 'lja', 'Lsat_1_v5_gn_1_129680' => 'lsa', 'Lsat_1_v5_gn_2_25321' => 'lsa', 'Lsat_1_v5_gn_2_95461' => 'lsa', 'Lsat_1_v5_gn_4_159620' => 'lsa', 'Lsat_1_v5_gn_6_41301' => 'lsa', 'Lsat_1_v5_gn_6_74660' => 'lsa', 'Lsat_1_v5_gn_7_11520' => 'lsa', 'Lsat_1_v5_gn_9_67680' => 'lsa', 'Manes.04G008300' => 'mes', 'Manes.04G008400' => 'mes', 'Manes.04G026500' => 'mes', 'Manes.10G135300' => 'mes', 'Manes.11G157300' => 'mes', 'Manes.12G074000' => 'mes', 'Manes.16G006200' => 'mes', 'Manes.17G026400' => 'mes', 'Mapoly0024s0086' => 'mpo', 'Mapoly0024s0087' => 'mpo', 'Mapoly0071s0057' => 'mpo', 'Mapoly0204s0012' => 'mpo', 'MBI04_g37681_MAGBIO' => 'mbi', 'MBI05_g17779_MAGBIO' => 'mbi', 'MBI12_g31184_MAGBIO' => 'mbi', 'MBI17_g11083_MAGBIO' => 'mbi', 'MBI18_g03883_MAGBIO' => 'mbi', 'MBI18_g28940_MAGBIO' => 'mbi', 'MCO01G690' => 'mco', 'MD03G1109900' => 'mdo', 'MD03G1134800' => 'mdo', 'MD05G1348000' => 'mdo', 'MD10G1322400' => 'mdo', 'MD11G1123300' => 'mdo', 'MD11G1157600' => 'mdo', 'Medtr2g084875' => 'mtr', 'Medtr2g088130' => 'mtr', 'Medtr4g055310' => 'mtr', 'Medtr4g061070' => 'mtr', 'Medtr4g132250' => 'mtr', 'MELO3C004795.2' => 'cme', 'MELO3C004797.2' => 'cme', 'MELO3C007396.2' => 'cme', 'MELO3C019277.2' => 'cme', 'MELO3C021449.2' => 'cme', 'MELO3C025736.2' => 'cme', 'Migut.D02175' => 'egut', 'Migut.H01573' => 'egut', 'Migut.M01327' => 'egut', 'Migut.N02513' => 'egut', 'MSTRG.14638' => 'ama', 'MSTRG.18632' => 'ama', 'MSTRG.7203' => 'ama', 'Nitab4.5_0000533g0140' => 'nta', 'Nitab4.5_0000888g0150' => 'nta', 'Nitab4.5_0001453g0040' => 'nta', 'Nitab4.5_0002827g0090' => 'nta', 'Nitab4.5_0003082g0040' => 'nta', 'Nitab4.5_0007799g0040' => 'nta', 'Nitab4.5_0008983g0010' => 'nta', 'Nitab4.5_0009017g0020' => 'nta', 'Nn1g02132' => 'nnu', 'Nn1g03492' => 'nnu', 'Nn1g03493' => 'nnu', 'Nn1g03494' => 'nnu', 'Nn1g07164' => 'nnu', 'Nn1g07291' => 'nnu', 'Nn2g10655' => 'nnu', 'Nn2g11652' => 'nnu', 'Nn2g14008' => 'nnu', 'Nn3g17476' => 'nnu', 'Nn3g17477' => 'nnu', 'Nn4g22370' => 'nnu', 'Nn4g25255' => 'nnu', 'Nn5g27755' => 'nnu', 'Nn6g34260' => 'nnu', 'Nn6g35041' => 'nnu', 'Oeu005924.1' => 'oeu', 'Oeu008383.1' => 'oeu', 'Oeu014928.1' => 'oeu', 'Oeu019889.1' => 'oeu', 'Oeu022271.1' => 'oeu', 'Oeu025271.1' => 'oeu', 'Oeu036302.1' => 'oeu', 'Oeu044100.1' => 'oeu', 'Os01g0528300' => 'osa', 'Os03g0286200' => 'osa', 'Os04g0406600' => 'osa', 'Os07g0512000' => 'osa', 'Os07g0694600' => 'osa', 'Os08g0411000' => 'osa', 'Os09g0565700' => 'osa', 'Os09g0566050' => 'osa', 'Os10g0523700' => 'osa', 'Peaxi162Scf00002g00514' => 'pax', 'Peaxi162Scf00047g01817' => 'pax', 'Peaxi162Scf00114g00001' => 'pax', 'Peaxi162Scf00147g00613' => 'pax', 'Peaxi162Scf00389g00425' => 'pax', 'PGR042G1139' => 'pgr', 'PGR042G3273' => 'pgr', 'PGR102G2180' => 'pgr', 'PGR119G0234' => 'pgr', 'PGR119G0668' => 'pgr', 'PGSC0003DMG400007122' => 'stu', 'PGSC0003DMG400016478' => 'stu', 'PGSC0003DMG400025374' => 'stu', 'PGSC0003DMG400026536' => 'stu', 'Phvul.003G079600' => 'pvu', 'Phvul.005G115600' => 'pvu', 'Phvul.005G127100' => 'pvu', 'Phvul.006G149500' => 'pvu', 'Phvul.006G149600' => 'pvu', 'Phvul.011G071800' => 'pvu', 'Phvul.011G090400' => 'pvu', 'Potri.004G013400' => 'ptr', 'Potri.004G188100' => 'ptr', 'Potri.008G195500' => 'ptr', 'Potri.009G148800' => 'ptr', 'Potri.011G004700' => 'ptr', 'Pp3c17_22810' => 'ppa', 'Pp3c18_4480' => 'ppa', 'Pp3c19_13030' => 'ppa', 'Pp3c1_33620' => 'ppa', 'Pp3c2_9380' => 'ppa', 'PRCOL_00001023' => 'pco', 'Prupe.3G216300' => 'ppe', 'Prupe.4G019500' => 'ppe', 'Prupe.6G092500' => 'ppe', 'Prupe.6G119200' => 'ppe', 'Psat0s1945g0080' => 'psa', 'Psat0s4167g0040' => 'psa', 'Psat1g185800' => 'psa', 'Psat4g006440' => 'psa', 'Psat4g006480' => 'psa', 'Psat4g168120' => 'psa', 'Psat5g255680' => 'psa', 'Psat5g261760' => 'psa', 'Psat7g222120' => 'psa', 'PSO063G7252' => 'pso', 'PSO170G4778' => 'pso', 'PSO210G2249' => 'pso', 'PSO339G2411' => 'pso', 'PSO339G2457' => 'pso', 'PSO339G2854' => 'pso', 'PSO339G4288' => 'pso', 'PSO339G4615' => 'pso', 'PSO384G2796' => 'pso', 'PSO384G2940' => 'pso', 'PSO384G4227' => 'pso', 'PSO478G1425' => 'pso', 'PSO541G3863' => 'pso', 'PSO675G0507' => 'pso', 'PSO782G0338' => 'pso', 'PSO832G0644' => 'pso', 'QL01p013664' => 'qlo', 'QL01p036598' => 'qlo', 'QL05p072984' => 'qlo', 'QL08p005768' => 'qlo', 'QL08p032743' => 'qlo', 'QL93p0073_0439' => 'qlo', 'QL93p0073_0444' => 'qlo', 'RcHm_v2.0_Chr5g0002851' => 'rch', 'RcHm_v2.0_Chr5g0055201' => 'rch', 'RcHm_v2.0_Chr5g0061191' => 'rch', 'RcHm_v2.0_Chr7g0203231' => 'rch', 'Rhsim01G0208100' => 'rsi', 'Rhsim01G0208200' => 'rsi', 'Rhsim02G0106500' => 'rsi', 'Rhsim03G0107900' => 'rsi', 'Rhsim06G0163400' => 'rsi', 'Rhsim13G0105200' => 'rsi', 'Sabra04G0006300' => 'sbr', 'Sabra04G0127000' => 'sbr', 'Sabra08G0148700' => 'sbr', 'Sabra09G0117400' => 'sbr', 'SalBow1G3326' => 'sbo', 'SalBow3G3228' => 'sbo', 'SalBow6G1634' => 'sbo', 'SalBow6G3603' => 'sbo', 'SalBow6G5266' => 'sbo', 'SalBow7G2265' => 'sbo', 'SalBow8G0850' => 'sbo', 'SalBow8G2592' => 'sbo', 'Sc05g0009240' => 'sci', 'Sc12g0002300' => 'sci', 'Sc21g0000100' => 'sci', 'Sc21g0004720' => 'sci', 'Sed0002949' => 'sed', 'Sed0004114' => 'sed', 'Sed0004306' => 'sed', 'Sed0006172' => 'sed', 'Sed0008413' => 'sed', 'Sed0013809' => 'sed', 'Sed0019556' => 'sed', 'SEGI_03570' => 'sgi', 'SEGI_07859' => 'sgi', 'SEGI_15042' => 'sgi', 'SEGI_16263' => 'sgi', 'SEGI_16552' => 'sgi', 'SEGI_24331' => 'sgi', 'SEGI_27316' => 'sgi', 'SEGI_29521' => 'sgi', 'SEGI_41342' => 'sgi', 'SGA_v2.0_scaffold27G11617' => 'sas', 'SGA_v2.0_scaffold316G48428' => 'sas', 'SGA_v2.0_scaffold49G18261' => 'sas', 'SGA_v2.0_scaffold7G03831' => 'sas', 'SGA_v2.0_scaffold93G28359' => 'sas', 'SHI02210' => 'shi', 'SHI06028' => 'shi', 'SHI06321' => 'shi', 'SMO111G0012' => 'smo', 'SMO228G0080' => 'smo', 'SMO356G0756' => 'smo', 'Solyc02g080620.3' => 'sly', 'Solyc06g074530.1' => 'sly', 'Solyc11g066890.1' => 'sly', 'Solyc11g072520.3' => 'sly', 'Sopen02g025330' => 'spe', 'Sopen06g031000' => 'spe', 'Sopen09g008240' => 'spe', 'Sopen09g025210' => 'spe', 'Sopen11g026600' => 'spe', 'Sopen11g030170' => 'spe', 'Sp1g10420' => 'spa', 'Sp3g06570' => 'spa', 'Sp4g10660' => 'spa', 'Sp5g16460' => 'spa', 'Sp6g22710' => 'spa', 'TAR365G0112' => 'tar', 'TAR369G0717' => 'tar', 'TAR374G0976' => 'tar', 'TAR623G1128' => 'tar', 'TAR626G1937' => 'tar', 'TAR627G0123' => 'tar', 'TAR628G0305' => 'tar', 'TAR636G1176' => 'tar', 'TAR636G2442' => 'tar', 'THA.LOC104800556' => 'tha', 'THA.LOC104809501' => 'tha', 'THA.LOC104815126' => 'tha', 'THA.LOC104815732' => 'tha', 'THA.LOC104823528' => 'tha', 'Thecc.02G365600' => 'tca', 'Thecc.06G222300' => 'tca', 'Thecc.09G261800' => 'tca', 'Thecc.09G291400' => 'tca', 'Thhalv10003028m.g' => 'esa', 'Thhalv10007886m.g' => 'esa', 'Thhalv10016085m.g' => 'esa', 'Thhalv10016681m.g' => 'esa', 'Thhalv10020951m.g' => 'esa', 'TPR.G15598' => 'tpr', 'TPR.G29305' => 'tpr', 'TPR.G32395' => 'tpr', 'TPR.G36998' => 'tpr', 'TPR.G4227' => 'tpr', 'TWI18G1433' => 'twi', 'TWI31G0755' => 'twi', 'TWI38G0912' => 'twi', 'TWI75G1097' => 'twi', 'TWI75G1619' => 'twi', 'TWI79G1336' => 'twi', 'unitig_0.g943' => 'ugi', 'unitig_0.g944' => 'ugi', 'unitig_22.g6646' => 'ugi', 'unitig_37.g12681' => 'ugi', 'unitig_8.g3290' => 'ugi', 'vmacro03278' => 'vma', 'vmacro12197' => 'vma', 'vmacro14478' => 'vma', 'vmacro15787' => 'vma', 'vmacro15789' => 'vma', 'vmacro15790' => 'vma', 'vmacro15806' => 'vma', 'vmacro22907' => 'vma', 'vmacro22908' => 'vma', 'vmacro22909' => 'vma', 'vmacro23108' => 'vma', 'VMungo0540G0540' => 'vmu', 'VMungo0540G2468' => 'vmu', 'VMungo1080G0390' => 'vmu', 'VMungo1080G1165' => 'vmu', 'VMungo1127G0170' => 'vmu', 'VMungo1127G2099' => 'vmu', 'VMungo1215G3013' => 'vmu', 'Zm00001eb013110' => 'zma', 'Zm00001eb084260' => 'zma', 'Zm00001eb096110' => 'zma', 'Zm00001eb217510' => 'zma', 'Zm00001eb322550' => 'zma', 'Zm00001eb390770' => 'zma', 'Zm00001eb397170' => 'zma', 'Zm00001eb404610' => 'zma', 'Zm00001eb421790' => 'zma' ) $gf_id = 'HOM05D000911' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000911' ) $data_identifier = 'HOM05D000911' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 16, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 5, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 6, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 8, 'nnu' => (int) 16, 'oeu' => (int) 8, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 5, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 16, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421790' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000911', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27780' => 'bna', 'A03p35380' => 'bna', 'A04p21160' => 'bna', 'A05p40570' => 'bna', 'A06p26900' => 'bna', 'A08p33230' => 'bna', 'A09p65960' => 'bna', 'A10p18290' => 'bna', 'Aa31LG1G12990' => 'aar', 'Aa31LG1G2980' => 'aar', 'Aa31LG4G14320' => 'aar', 'Aa31LG7G11800' => 'aar', 'Aa31sc36G50' => 'aar', 'Aa31sc36G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3721' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5459' => 'aag', 'Actinidia03028' => 'ach', 'Actinidia03753' => 'ach', 'Actinidia04187' => 'ach', 'Actinidia05509' => 'ach', 'Actinidia24180' => 'ach', 'Actinidia26906' => 'ach', 'Actinidia37097' => 'ach', 'Actinidia38249' => 'ach', 'Ah.01g003470' => 'amhyb', 'Ah.01g004580' => 'amhyb', 'Ah.01g014850' => 'amhyb', 'Ah.01g016830' => 'amhyb', 'Ah.14g088000' => 'amhyb', 'AL1G22980' => 'aly', 'AL3G18990' => 'aly', 'AL4G22440' => 'aly', 'AL4G33180' => 'aly', 'AL5G22920' => 'aly', 'AL6G33660' => 'aly', 'AL8G20720' => 'aly', 'Aqoxy1G00935' => 'aox', 'Aqoxy1G02094' => 'aox', 'Aqoxy2G01239' => 'aox', 'Aqoxy4G01870' => 'aox', 'Aqoxy7G00450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.36ZVTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71EM27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5D6C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH3WRE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3NCM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RIM768' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YB5YRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z36GDV' => 'arhy', 'AT1G08250' => 'ath', 'AT1G11790' => 'ath', 'AT2G27820' => 'ath', 'AT3G07630' => 'ath', 'AT3G44720' => 'ath', 'AT5G22630' => 'ath', 'ATR0693G304' => 'atr', 'ATR0794G109' => 'atr', 'ATR0820G120' => 'atr', 'ATR1159G064' => 'atr', 'Atru.chr10.2239' => 'acertr', 'Atru.chr3.3371' => 'acertr', 'Atru.chr6.3202' => 'acertr', 'AUR62006499' => 'cqu', 'AUR62012718' => 'cqu', 'AUR62021938' => 'cqu', 'AUR62023932' => 'cqu', 'AUR62025034' => 'cqu', 'AUR62025035' => 'cqu', 'AUR62038307' => 'cqu', 'AUR62043466' => 'cqu', 'BcaB02g10748' => 'bca', 'BcaB03g13231' => 'bca', 'BcaB03g14689' => 'bca', 'BcaB05g22716' => 'bca', 'BcaB06g28172' => 'bca', 'BcaB08g36413' => 'bca', 'BcaC01g02186' => 'bca', 'BcaC01g04272' => 'bca', 'BcaC02g08080' => 'bca', 'BcaC02g08227' => 'bca', 'BcaC03g13901' => 'bca', 'BcaC04g19593' => 'bca', 'BcaC04g20874' => 'bca', 'BcaC05g29557' => 'bca', 'BcaC06g35505' => 'bca', 'BcaC07g41954' => 'bca', 'BcaC07g41955' => 'bca', 'BcaC07g41956' => 'bca', 'BcaC07g42519' => 'bca', 'BcaC07g42520' => 'bca', 'BcaC07g42523' => 'bca', 'BcaC07g42524' => 'bca', 'BcaC07g42525' => 'bca', 'BcaC08g47480' => 'bca', 'BcaC08g47481' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00530' => 'bna', 'BolC2t07178H' => 'bol', 'BolC3t16567H' => 'bol', 'BolC4t27234H' => 'bol', 'BolC5t29728H' => 'bol', 'BolC5t34622H' => 'bol', 'BolC6t40321H' => 'bol', 'BolC7t42028H' => 'bol', 'BolC8t49125H' => 'bol', 'BolC8t52538H' => 'bol', 'BolC8t52539H' => 'bol', 'BolC9t56681H' => 'bol', 'BolC9t58266H' => 'bol', 'BolSC21t60294H' => 'bol', 'BraA02t05670Z' => 'bra', 'BraA03t12716Z' => 'bra', 'BraA04t17685Z' => 'bra', 'BraA05t22788Z' => 'bra', 'BraA06t24032Z' => 'bra', 'BraA06t25625Z' => 'bra', 'BraA07t27930Z' => 'bra', 'BraA08t35242Z' => 'bra', 'BraA09t38609Z' => 'bra', 'BraA10t43905Z' => 'bra', 'C02p11060' => 'bna', 'C03p42990' => 'bna', 'C03p67310' => 'bna', 'C04p56990' => 'bna', 'C04p58660' => 'bna', 'C05p09890' => 'bna', 'C05p59680' => 'bna', 'C06p19830' => 'bna', 'C06p53040' => 'bna', 'C07p15230' => 'bna', 'C08p50070' => 'bna', 'C08p50090' => 'bna', 'C09p38330' => 'bna', 'C09p53940' => 'bna', 'CAN.G1014.1' => 'can', 'CAN.G644.30' => 'can', 'CAN.G84.47' => 'can', 'CAN.G919.8' => 'can', 'CANSAT54G0113' => 'cansat', 'CANSAT54G1286' => 'cansat', 'CANSAT64G1020' => 'cansat', 'CARHR008080' => 'chi', 'CARHR008090' => 'chi', 'CARHR012130' => 'chi', 'CARHR038390' => 'chi', 'CARHR082330' => 'chi', 'CARHR120520' => 'chi', 'CARHR151470' => 'chi', 'CARHR190950' => 'chi', 'Carub.0001s0760' => 'cru', 'Carub.0001s1146' => 'cru', 'Carub.0003s0721' => 'cru', 'Carub.0004s0858' => 'cru', 'Carub.0005s1040' => 'cru', 'Carub.0006s2035' => 'cru', 'Carub.0015s0005' => 'cru', 'Ca_01607_v3' => 'car', 'Ca_01677_v3' => 'car', 'Ca_06087_v3' => 'car', 'Ca_19238_v3' => 'car', 'Ca_19373_v3' => 'car', 'Ca_21079_v3' => 'car', 'CBR_g54016' => 'cbr', 'CBR_g54018' => 'cbr', 'CBR_g54020' => 'cbr', 'Cc01_g09780' => 'ccan', 'Cc01_g11680' => 'ccan', 'Cc02_g15610' => 'ccan', 'Cc05_g04350' => 'ccan', 'Cc09_g01580' => 'ccan', 'CDE01G0795' => 'cde', 'CDE02G2024' => 'cde', 'CDE02G2260' => 'cde', 'CDE02G4561' => 'cde', 'CDE05G2733' => 'cde', 'CDE05G3422' => 'cde', 'CDE06G2003' => 'cde', 'CDE08G0576' => 'cde', 'CDE09G0048' => 'cde', 'CDE11G0805' => 'cde', 'Cfa003644' => 'cfa', 'Cfa006290' => 'cfa', 'Cfa010080' => 'cfa', 'Cfa011376' => 'cfa', 'Cfa011576' => 'cfa', 'Cfa011577' => 'cfa', 'Cfa014389' => 'cfa', 'Ciclev10006044m.g' => 'ccl', 'Ciclev10006954m.g' => 'ccl', 'Ciclev10015131m.g' => 'ccl', 'Ciclev10015580m.g' => 'ccl', 'Ciclev10028359m.g' => 'ccl', 'Ciclev10028573m.g' => 'ccl', 'CiPaw.03G159300' => 'cil', 'CiPaw.04G115100' => 'cil', 'CiPaw.09G092800' => 'cil', 'CiPaw.10G071800' => 'cil', 'CiPaw.13G105800' => 'cil', 'CiPaw.13G141000' => 'cil', 'CiPaw.14G103400' => 'cil', 'ClCG01G012700' => 'cla', 'ClCG01G012720' => 'cla', 'ClCG01G021920' => 'cla', 'ClCG02G008870' => 'cla', 'ClCG02G020840' => 'cla', 'ClCG02G021930' => 'cla', 'COL.COLO4_19302' => 'col', 'COL.COLO4_25262' => 'col', 'COL.COLO4_31788' => 'col', 'Cpa.g.c34684' => 'cpa', 'Cpa.g.c36520.1' => 'cpa', 'Cpa.g.c45626' => 'cpa', 'Cpa.g.sc121.17' => 'cpa', 'Cpa.g.sc13.22' => 'cpa', 'Cpa.g.sc87.88' => 'cpa', 'Cre06.g261800' => 'cre', 'CsaV3_1G014500' => 'csa', 'CsaV3_1G014510' => 'csa', 'CsaV3_2G034880' => 'csa', 'CsaV3_6G014760' => 'csa', 'CsaV3_6G021500' => 'csa', 'CsaV3_6G048980' => 'csa', 'CSS0002511' => 'camsi', 'CSS0007556' => 'camsi', 'CSS0008532' => 'camsi', 'CSS0009709' => 'camsi', 'CSS0010486' => 'camsi', 'CSS0016768' => 'camsi', 'CSS0023512' => 'camsi', 'CSS0025341' => 'camsi', 'CSS0027999' => 'camsi', 'CSS0028944' => 'camsi', 'CSS0032292' => 'camsi', 'CSS0032464' => 'camsi', 'CSS0037153' => 'camsi', 'CSS0039256' => 'camsi', 'CSS0048392' => 'camsi', 'CSS0050458' => 'camsi', 'DCAR_004224' => 'dca', 'DCAR_006147' => 'dca', 'DCAR_006465' => 'dca', 'DCAR_008159' => 'dca', 'DCAR_012164' => 'dca', 'DCAR_019764' => 'dca', 'Dinv05418' => 'din', 'Dinv10839' => 'din', 'Dinv12521' => 'din', 'Dinv13900' => 'din', 'Dinv29426' => 'din', 'Duzib150G0263' => 'dzi', 'Duzib168G1178' => 'dzi', 'Duzib168G1924' => 'dzi', 'Duzib170G0299' => 'dzi', 'Duzib170G0813' => 'dzi', 'Duzib235G1128' => 'dzi', 'Duzib248G1060' => 'dzi', 'ECA232G1910' => 'eca', 'ECA233G4621' => 'eca', 'ECA238G1216' => 'eca', 'ECA238G1784' => 'eca', 'ECA248G1242' => 'eca', 'EL10Ac8g20071' => 'bvu', 'EL10Ac9g21086' => 'bvu', 'EL10Ac9g22407' => 'bvu', 'EL10Ac9g22412' => 'bvu', 'Eucgr.A01119' => 'egr', 'Eucgr.E04043' => 'egr', 'Eucgr.J00428' => 'egr', 'Eucgr.J00958' => 'egr', 'FAN11G3091' => 'fan', 'FAN11G3651' => 'fan', 'FAN16G2566' => 'fan', 'FAN21G3155' => 'fan', 'FAN21G3400' => 'fan', 'FAN21G3543' => 'fan', 'FAN25G0234' => 'fan', 'FAN25G1422' => 'fan', 'FAN25G3392' => 'fan', 'FvH4_3g01940' => 'fve', 'FvH4_3g29870' => 'fve', 'FvH4_3g33680' => 'fve', 'Glyma.09G004200' => 'gma', 'Glyma.11G151288' => 'gma', 'Glyma.11G189100' => 'gma', 'Glyma.12G072500' => 'gma', 'Glyma.12G085500' => 'gma', 'Glyma.12G181800' => 'gma', 'Glyma.12G193000' => 'gma', 'Glyma.13G309300' => 'gma', 'Glyma.13G319000' => 'gma', 'Glyma.17G012600' => 'gma', 'Gohir.A06G148600' => 'ghi', 'Gohir.A07G115800' => 'ghi', 'Gohir.A08G003600' => 'ghi', 'Gohir.A09G093300' => 'ghi', 'Gohir.A09G105400' => 'ghi', 'Gohir.A09G105500' => 'ghi', 'Gohir.D06G154600' => 'ghi', 'Gohir.D07G120200' => 'ghi', 'Gohir.D08G013900' => 'ghi', 'Gohir.D09G093100' => 'ghi', 'Gohir.D09G102200' => 'ghi', 'Gohir.D09G102300' => 'ghi', 'Gorai.001G129400' => 'gra', 'Gorai.004G008200' => 'gra', 'Gorai.006G109800' => 'gra', 'Gorai.006G119500' => 'gra', 'Gorai.006G121300' => 'gra', 'Gorai.010G180700' => 'gra', 'GSVIVG01012716001' => 'vvi', 'GSVIVG01025118001' => 'vvi', 'GSVIVG01030439001' => 'vvi', 'GSVIVG01031397001' => 'vvi', 'HanXRQChr01g0004201' => 'han', 'HanXRQChr02g0054941' => 'han', 'HanXRQChr05g0141811' => 'han', 'HanXRQChr07g0197751' => 'han', 'HanXRQChr11g0346691' => 'han', 'HanXRQChr13g0396971' => 'han', 'HanXRQChr14g0432951' => 'han', 'HanXRQChr14g0452001' => 'han', 'HanXRQChr15g0496681' => 'han', 'HanXRQChr17g0557491' => 'han', 'HanXRQChr17g0557501' => 'han', 'Haze_06809' => 'cav', 'Haze_12852' => 'cav', 'Haze_15850' => 'cav', 'Haze_23446' => 'cav', 'Haze_23942' => 'cav', 'Haze_23943' => 'cav', 'Hma1.2p1_0091F.1_g046450' => 'hma', 'Hma1.2p1_0128F.1_g059910' => 'hma', 'Hma1.2p1_0249F.1_g102260' => 'hma', 'Hma1.2p1_0453F.1_g156190' => 'hma', 'Hma1.2p1_0695F.1_g204380' => 'hma', 'Hma1.2p1_0749F.1_g212650' => 'hma', 'Hma1.2p1_2156F.1_g315420' => 'hma', 'Hma1.2p1_2686F.1_g326940' => 'hma', 'HPP92_006428' => 'vpl', 'HPP92_012069' => 'vpl', 'HPP92_014129' => 'vpl', 'HPP92_014133' => 'vpl', 'HPP92_017315' => 'vpl', 'HPP92_026445' => 'vpl', 'HPP92_026446' => 'vpl', 'Hund00774' => 'sun', 'Hund07682' => 'sun', 'Hund21413' => 'sun', 'Hund23462' => 'sun', 'Hund23463' => 'sun', 'Lalb_Chr03g0027911' => 'lal', 'Lalb_Chr13g0304271' => 'lal', 'Lalb_Chr19g0137471' => 'lal', 'Lalb_Chr22g0350651' => 'lal', 'Lalb_Chr24g0395151' => 'lal', 'Lj1A1231T40' => 'lonja', 'Lj1A221T48' => 'lonja', 'Lj1C924T12' => 'lonja', 'Lj2C993G6' => 'lonja', 'Lj3g0005790' => 'lja', 'Lj3g0015432' => 'lja', 'Lj3g0017722' => 'lja', 'Lj3g0018497' => 'lja', 'Lj4g0025071' => 'lja', 'Lsat_1_v5_gn_1_129680' => 'lsa', 'Lsat_1_v5_gn_2_25321' => 'lsa', 'Lsat_1_v5_gn_2_95461' => 'lsa', 'Lsat_1_v5_gn_4_159620' => 'lsa', 'Lsat_1_v5_gn_6_41301' => 'lsa', 'Lsat_1_v5_gn_6_74660' => 'lsa', 'Lsat_1_v5_gn_7_11520' => 'lsa', 'Lsat_1_v5_gn_9_67680' => 'lsa', 'Manes.04G008300' => 'mes', 'Manes.04G008400' => 'mes', 'Manes.04G026500' => 'mes', 'Manes.10G135300' => 'mes', 'Manes.11G157300' => 'mes', 'Manes.12G074000' => 'mes', 'Manes.16G006200' => 'mes', 'Manes.17G026400' => 'mes', 'Mapoly0024s0086' => 'mpo', 'Mapoly0024s0087' => 'mpo', 'Mapoly0071s0057' => 'mpo', 'Mapoly0204s0012' => 'mpo', 'MBI04_g37681_MAGBIO' => 'mbi', 'MBI05_g17779_MAGBIO' => 'mbi', 'MBI12_g31184_MAGBIO' => 'mbi', 'MBI17_g11083_MAGBIO' => 'mbi', 'MBI18_g03883_MAGBIO' => 'mbi', 'MBI18_g28940_MAGBIO' => 'mbi', 'MCO01G690' => 'mco', 'MD03G1109900' => 'mdo', 'MD03G1134800' => 'mdo', 'MD05G1348000' => 'mdo', 'MD10G1322400' => 'mdo', 'MD11G1123300' => 'mdo', 'MD11G1157600' => 'mdo', 'Medtr2g084875' => 'mtr', 'Medtr2g088130' => 'mtr', 'Medtr4g055310' => 'mtr', 'Medtr4g061070' => 'mtr', 'Medtr4g132250' => 'mtr', 'MELO3C004795.2' => 'cme', 'MELO3C004797.2' => 'cme', 'MELO3C007396.2' => 'cme', 'MELO3C019277.2' => 'cme', 'MELO3C021449.2' => 'cme', 'MELO3C025736.2' => 'cme', 'Migut.D02175' => 'egut', 'Migut.H01573' => 'egut', 'Migut.M01327' => 'egut', 'Migut.N02513' => 'egut', 'MSTRG.14638' => 'ama', 'MSTRG.18632' => 'ama', 'MSTRG.7203' => 'ama', 'Nitab4.5_0000533g0140' => 'nta', 'Nitab4.5_0000888g0150' => 'nta', 'Nitab4.5_0001453g0040' => 'nta', 'Nitab4.5_0002827g0090' => 'nta', 'Nitab4.5_0003082g0040' => 'nta', 'Nitab4.5_0007799g0040' => 'nta', 'Nitab4.5_0008983g0010' => 'nta', 'Nitab4.5_0009017g0020' => 'nta', 'Nn1g02132' => 'nnu', 'Nn1g03492' => 'nnu', 'Nn1g03493' => 'nnu', 'Nn1g03494' => 'nnu', 'Nn1g07164' => 'nnu', 'Nn1g07291' => 'nnu', 'Nn2g10655' => 'nnu', 'Nn2g11652' => 'nnu', 'Nn2g14008' => 'nnu', 'Nn3g17476' => 'nnu', 'Nn3g17477' => 'nnu', 'Nn4g22370' => 'nnu', 'Nn4g25255' => 'nnu', 'Nn5g27755' => 'nnu', 'Nn6g34260' => 'nnu', 'Nn6g35041' => 'nnu', 'Oeu005924.1' => 'oeu', 'Oeu008383.1' => 'oeu', 'Oeu014928.1' => 'oeu', 'Oeu019889.1' => 'oeu', 'Oeu022271.1' => 'oeu', 'Oeu025271.1' => 'oeu', 'Oeu036302.1' => 'oeu', 'Oeu044100.1' => 'oeu', 'Os01g0528300' => 'osa', 'Os03g0286200' => 'osa', 'Os04g0406600' => 'osa', 'Os07g0512000' => 'osa', 'Os07g0694600' => 'osa', 'Os08g0411000' => 'osa', 'Os09g0565700' => 'osa', 'Os09g0566050' => 'osa', 'Os10g0523700' => 'osa', 'Peaxi162Scf00002g00514' => 'pax', 'Peaxi162Scf00047g01817' => 'pax', 'Peaxi162Scf00114g00001' => 'pax', 'Peaxi162Scf00147g00613' => 'pax', 'Peaxi162Scf00389g00425' => 'pax', 'PGR042G1139' => 'pgr', 'PGR042G3273' => 'pgr', 'PGR102G2180' => 'pgr', 'PGR119G0234' => 'pgr', 'PGR119G0668' => 'pgr', 'PGSC0003DMG400007122' => 'stu', 'PGSC0003DMG400016478' => 'stu', 'PGSC0003DMG400025374' => 'stu', 'PGSC0003DMG400026536' => 'stu', 'Phvul.003G079600' => 'pvu', 'Phvul.005G115600' => 'pvu', 'Phvul.005G127100' => 'pvu', 'Phvul.006G149500' => 'pvu', 'Phvul.006G149600' => 'pvu', 'Phvul.011G071800' => 'pvu', 'Phvul.011G090400' => 'pvu', 'Potri.004G013400' => 'ptr', 'Potri.004G188100' => 'ptr', 'Potri.008G195500' => 'ptr', 'Potri.009G148800' => 'ptr', 'Potri.011G004700' => 'ptr', 'Pp3c17_22810' => 'ppa', 'Pp3c18_4480' => 'ppa', 'Pp3c19_13030' => 'ppa', 'Pp3c1_33620' => 'ppa', 'Pp3c2_9380' => 'ppa', 'PRCOL_00001023' => 'pco', 'Prupe.3G216300' => 'ppe', 'Prupe.4G019500' => 'ppe', 'Prupe.6G092500' => 'ppe', 'Prupe.6G119200' => 'ppe', 'Psat0s1945g0080' => 'psa', 'Psat0s4167g0040' => 'psa', 'Psat1g185800' => 'psa', 'Psat4g006440' => 'psa', 'Psat4g006480' => 'psa', 'Psat4g168120' => 'psa', 'Psat5g255680' => 'psa', 'Psat5g261760' => 'psa', 'Psat7g222120' => 'psa', 'PSO063G7252' => 'pso', 'PSO170G4778' => 'pso', 'PSO210G2249' => 'pso', 'PSO339G2411' => 'pso', 'PSO339G2457' => 'pso', 'PSO339G2854' => 'pso', 'PSO339G4288' => 'pso', 'PSO339G4615' => 'pso', 'PSO384G2796' => 'pso', 'PSO384G2940' => 'pso', 'PSO384G4227' => 'pso', 'PSO478G1425' => 'pso', 'PSO541G3863' => 'pso', 'PSO675G0507' => 'pso', 'PSO782G0338' => 'pso', 'PSO832G0644' => 'pso', 'QL01p013664' => 'qlo', 'QL01p036598' => 'qlo', 'QL05p072984' => 'qlo', 'QL08p005768' => 'qlo', 'QL08p032743' => 'qlo', 'QL93p0073_0439' => 'qlo', 'QL93p0073_0444' => 'qlo', 'RcHm_v2.0_Chr5g0002851' => 'rch', 'RcHm_v2.0_Chr5g0055201' => 'rch', 'RcHm_v2.0_Chr5g0061191' => 'rch', 'RcHm_v2.0_Chr7g0203231' => 'rch', 'Rhsim01G0208100' => 'rsi', 'Rhsim01G0208200' => 'rsi', 'Rhsim02G0106500' => 'rsi', 'Rhsim03G0107900' => 'rsi', 'Rhsim06G0163400' => 'rsi', 'Rhsim13G0105200' => 'rsi', 'Sabra04G0006300' => 'sbr', 'Sabra04G0127000' => 'sbr', 'Sabra08G0148700' => 'sbr', 'Sabra09G0117400' => 'sbr', 'SalBow1G3326' => 'sbo', 'SalBow3G3228' => 'sbo', 'SalBow6G1634' => 'sbo', 'SalBow6G3603' => 'sbo', 'SalBow6G5266' => 'sbo', 'SalBow7G2265' => 'sbo', 'SalBow8G0850' => 'sbo', 'SalBow8G2592' => 'sbo', 'Sc05g0009240' => 'sci', 'Sc12g0002300' => 'sci', 'Sc21g0000100' => 'sci', 'Sc21g0004720' => 'sci', 'Sed0002949' => 'sed', 'Sed0004114' => 'sed', 'Sed0004306' => 'sed', 'Sed0006172' => 'sed', 'Sed0008413' => 'sed', 'Sed0013809' => 'sed', 'Sed0019556' => 'sed', 'SEGI_03570' => 'sgi', 'SEGI_07859' => 'sgi', 'SEGI_15042' => 'sgi', 'SEGI_16263' => 'sgi', 'SEGI_16552' => 'sgi', 'SEGI_24331' => 'sgi', 'SEGI_27316' => 'sgi', 'SEGI_29521' => 'sgi', 'SEGI_41342' => 'sgi', 'SGA_v2.0_scaffold27G11617' => 'sas', 'SGA_v2.0_scaffold316G48428' => 'sas', 'SGA_v2.0_scaffold49G18261' => 'sas', 'SGA_v2.0_scaffold7G03831' => 'sas', 'SGA_v2.0_scaffold93G28359' => 'sas', 'SHI02210' => 'shi', 'SHI06028' => 'shi', 'SHI06321' => 'shi', 'SMO111G0012' => 'smo', 'SMO228G0080' => 'smo', 'SMO356G0756' => 'smo', 'Solyc02g080620.3' => 'sly', 'Solyc06g074530.1' => 'sly', 'Solyc11g066890.1' => 'sly', 'Solyc11g072520.3' => 'sly', 'Sopen02g025330' => 'spe', 'Sopen06g031000' => 'spe', 'Sopen09g008240' => 'spe', 'Sopen09g025210' => 'spe', 'Sopen11g026600' => 'spe', 'Sopen11g030170' => 'spe', 'Sp1g10420' => 'spa', 'Sp3g06570' => 'spa', 'Sp4g10660' => 'spa', 'Sp5g16460' => 'spa', 'Sp6g22710' => 'spa', 'TAR365G0112' => 'tar', 'TAR369G0717' => 'tar', 'TAR374G0976' => 'tar', 'TAR623G1128' => 'tar', 'TAR626G1937' => 'tar', 'TAR627G0123' => 'tar', 'TAR628G0305' => 'tar', 'TAR636G1176' => 'tar', 'TAR636G2442' => 'tar', 'THA.LOC104800556' => 'tha', 'THA.LOC104809501' => 'tha', 'THA.LOC104815126' => 'tha', 'THA.LOC104815732' => 'tha', 'THA.LOC104823528' => 'tha', 'Thecc.02G365600' => 'tca', 'Thecc.06G222300' => 'tca', 'Thecc.09G261800' => 'tca', 'Thecc.09G291400' => 'tca', 'Thhalv10003028m.g' => 'esa', 'Thhalv10007886m.g' => 'esa', 'Thhalv10016085m.g' => 'esa', 'Thhalv10016681m.g' => 'esa', 'Thhalv10020951m.g' => 'esa', 'TPR.G15598' => 'tpr', 'TPR.G29305' => 'tpr', 'TPR.G32395' => 'tpr', 'TPR.G36998' => 'tpr', 'TPR.G4227' => 'tpr', 'TWI18G1433' => 'twi', 'TWI31G0755' => 'twi', 'TWI38G0912' => 'twi', 'TWI75G1097' => 'twi', 'TWI75G1619' => 'twi', 'TWI79G1336' => 'twi', 'unitig_0.g943' => 'ugi', 'unitig_0.g944' => 'ugi', 'unitig_22.g6646' => 'ugi', 'unitig_37.g12681' => 'ugi', 'unitig_8.g3290' => 'ugi', 'vmacro03278' => 'vma', 'vmacro12197' => 'vma', 'vmacro14478' => 'vma', 'vmacro15787' => 'vma', 'vmacro15789' => 'vma', 'vmacro15790' => 'vma', 'vmacro15806' => 'vma', 'vmacro22907' => 'vma', 'vmacro22908' => 'vma', 'vmacro22909' => 'vma', 'vmacro23108' => 'vma', 'VMungo0540G0540' => 'vmu', 'VMungo0540G2468' => 'vmu', 'VMungo1080G0390' => 'vmu', 'VMungo1080G1165' => 'vmu', 'VMungo1127G0170' => 'vmu', 'VMungo1127G2099' => 'vmu', 'VMungo1215G3013' => 'vmu', 'Zm00001eb013110' => 'zma', 'Zm00001eb084260' => 'zma', 'Zm00001eb096110' => 'zma', 'Zm00001eb217510' => 'zma', 'Zm00001eb322550' => 'zma', 'Zm00001eb390770' => 'zma', 'Zm00001eb397170' => 'zma', 'Zm00001eb404610' => 'zma', 'Zm00001eb421790' => 'zma' ), 'gf_id' => 'HOM05D000911', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000911' ), 'data_identifier' => 'HOM05D000911', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000911', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27780' => 'bna', 'A03p35380' => 'bna', 'A04p21160' => 'bna', 'A05p40570' => 'bna', 'A06p26900' => 'bna', 'A08p33230' => 'bna', 'A09p65960' => 'bna', 'A10p18290' => 'bna', 'Aa31LG1G12990' => 'aar', 'Aa31LG1G2980' => 'aar', 'Aa31LG4G14320' => 'aar', 'Aa31LG7G11800' => 'aar', 'Aa31sc36G50' => 'aar', 'Aa31sc36G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3721' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5459' => 'aag', 'Actinidia03028' => 'ach', 'Actinidia03753' => 'ach', 'Actinidia04187' => 'ach', 'Actinidia05509' => 'ach', 'Actinidia24180' => 'ach', 'Actinidia26906' => 'ach', 'Actinidia37097' => 'ach', 'Actinidia38249' => 'ach', 'Ah.01g003470' => 'amhyb', 'Ah.01g004580' => 'amhyb', 'Ah.01g014850' => 'amhyb', 'Ah.01g016830' => 'amhyb', 'Ah.14g088000' => 'amhyb', 'AL1G22980' => 'aly', 'AL3G18990' => 'aly', 'AL4G22440' => 'aly', 'AL4G33180' => 'aly', 'AL5G22920' => 'aly', 'AL6G33660' => 'aly', 'AL8G20720' => 'aly', 'Aqoxy1G00935' => 'aox', 'Aqoxy1G02094' => 'aox', 'Aqoxy2G01239' => 'aox', 'Aqoxy4G01870' => 'aox', 'Aqoxy7G00450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.36ZVTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71EM27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5D6C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH3WRE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3NCM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RIM768' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YB5YRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z36GDV' => 'arhy', 'AT1G08250' => 'ath', 'AT1G11790' => 'ath', 'AT2G27820' => 'ath', 'AT3G07630' => 'ath', 'AT3G44720' => 'ath', 'AT5G22630' => 'ath', 'ATR0693G304' => 'atr', 'ATR0794G109' => 'atr', 'ATR0820G120' => 'atr', 'ATR1159G064' => 'atr', 'Atru.chr10.2239' => 'acertr', 'Atru.chr3.3371' => 'acertr', 'Atru.chr6.3202' => 'acertr', 'AUR62006499' => 'cqu', 'AUR62012718' => 'cqu', 'AUR62021938' => 'cqu', 'AUR62023932' => 'cqu', 'AUR62025034' => 'cqu', 'AUR62025035' => 'cqu', 'AUR62038307' => 'cqu', 'AUR62043466' => 'cqu', 'BcaB02g10748' => 'bca', 'BcaB03g13231' => 'bca', 'BcaB03g14689' => 'bca', 'BcaB05g22716' => 'bca', 'BcaB06g28172' => 'bca', 'BcaB08g36413' => 'bca', 'BcaC01g02186' => 'bca', 'BcaC01g04272' => 'bca', 'BcaC02g08080' => 'bca', 'BcaC02g08227' => 'bca', 'BcaC03g13901' => 'bca', 'BcaC04g19593' => 'bca', 'BcaC04g20874' => 'bca', 'BcaC05g29557' => 'bca', 'BcaC06g35505' => 'bca', 'BcaC07g41954' => 'bca', 'BcaC07g41955' => 'bca', 'BcaC07g41956' => 'bca', 'BcaC07g42519' => 'bca', 'BcaC07g42520' => 'bca', 'BcaC07g42523' => 'bca', 'BcaC07g42524' => 'bca', 'BcaC07g42525' => 'bca', 'BcaC08g47480' => 'bca', 'BcaC08g47481' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00530' => 'bna', 'BolC2t07178H' => 'bol', 'BolC3t16567H' => 'bol', 'BolC4t27234H' => 'bol', 'BolC5t29728H' => 'bol', 'BolC5t34622H' => 'bol', 'BolC6t40321H' => 'bol', 'BolC7t42028H' => 'bol', 'BolC8t49125H' => 'bol', 'BolC8t52538H' => 'bol', 'BolC8t52539H' => 'bol', 'BolC9t56681H' => 'bol', 'BolC9t58266H' => 'bol', 'BolSC21t60294H' => 'bol', 'BraA02t05670Z' => 'bra', 'BraA03t12716Z' => 'bra', 'BraA04t17685Z' => 'bra', 'BraA05t22788Z' => 'bra', 'BraA06t24032Z' => 'bra', 'BraA06t25625Z' => 'bra', 'BraA07t27930Z' => 'bra', 'BraA08t35242Z' => 'bra', 'BraA09t38609Z' => 'bra', 'BraA10t43905Z' => 'bra', 'C02p11060' => 'bna', 'C03p42990' => 'bna', 'C03p67310' => 'bna', 'C04p56990' => 'bna', 'C04p58660' => 'bna', 'C05p09890' => 'bna', 'C05p59680' => 'bna', 'C06p19830' => 'bna', 'C06p53040' => 'bna', 'C07p15230' => 'bna', 'C08p50070' => 'bna', 'C08p50090' => 'bna', 'C09p38330' => 'bna', 'C09p53940' => 'bna', 'CAN.G1014.1' => 'can', 'CAN.G644.30' => 'can', 'CAN.G84.47' => 'can', 'CAN.G919.8' => 'can', 'CANSAT54G0113' => 'cansat', 'CANSAT54G1286' => 'cansat', 'CANSAT64G1020' => 'cansat', 'CARHR008080' => 'chi', 'CARHR008090' => 'chi', 'CARHR012130' => 'chi', 'CARHR038390' => 'chi', 'CARHR082330' => 'chi', 'CARHR120520' => 'chi', 'CARHR151470' => 'chi', 'CARHR190950' => 'chi', 'Carub.0001s0760' => 'cru', 'Carub.0001s1146' => 'cru', 'Carub.0003s0721' => 'cru', 'Carub.0004s0858' => 'cru', 'Carub.0005s1040' => 'cru', 'Carub.0006s2035' => 'cru', 'Carub.0015s0005' => 'cru', 'Ca_01607_v3' => 'car', 'Ca_01677_v3' => 'car', 'Ca_06087_v3' => 'car', 'Ca_19238_v3' => 'car', 'Ca_19373_v3' => 'car', 'Ca_21079_v3' => 'car', 'CBR_g54016' => 'cbr', 'CBR_g54018' => 'cbr', 'CBR_g54020' => 'cbr', 'Cc01_g09780' => 'ccan', 'Cc01_g11680' => 'ccan', 'Cc02_g15610' => 'ccan', 'Cc05_g04350' => 'ccan', 'Cc09_g01580' => 'ccan', 'CDE01G0795' => 'cde', 'CDE02G2024' => 'cde', 'CDE02G2260' => 'cde', 'CDE02G4561' => 'cde', 'CDE05G2733' => 'cde', 'CDE05G3422' => 'cde', 'CDE06G2003' => 'cde', 'CDE08G0576' => 'cde', 'CDE09G0048' => 'cde', 'CDE11G0805' => 'cde', 'Cfa003644' => 'cfa', 'Cfa006290' => 'cfa', 'Cfa010080' => 'cfa', 'Cfa011376' => 'cfa', 'Cfa011576' => 'cfa', 'Cfa011577' => 'cfa', 'Cfa014389' => 'cfa', 'Ciclev10006044m.g' => 'ccl', 'Ciclev10006954m.g' => 'ccl', 'Ciclev10015131m.g' => 'ccl', 'Ciclev10015580m.g' => 'ccl', 'Ciclev10028359m.g' => 'ccl', 'Ciclev10028573m.g' => 'ccl', 'CiPaw.03G159300' => 'cil', 'CiPaw.04G115100' => 'cil', 'CiPaw.09G092800' => 'cil', 'CiPaw.10G071800' => 'cil', 'CiPaw.13G105800' => 'cil', 'CiPaw.13G141000' => 'cil', 'CiPaw.14G103400' => 'cil', 'ClCG01G012700' => 'cla', 'ClCG01G012720' => 'cla', 'ClCG01G021920' => 'cla', 'ClCG02G008870' => 'cla', 'ClCG02G020840' => 'cla', 'ClCG02G021930' => 'cla', 'COL.COLO4_19302' => 'col', 'COL.COLO4_25262' => 'col', 'COL.COLO4_31788' => 'col', 'Cpa.g.c34684' => 'cpa', 'Cpa.g.c36520.1' => 'cpa', 'Cpa.g.c45626' => 'cpa', 'Cpa.g.sc121.17' => 'cpa', 'Cpa.g.sc13.22' => 'cpa', 'Cpa.g.sc87.88' => 'cpa', 'Cre06.g261800' => 'cre', 'CsaV3_1G014500' => 'csa', 'CsaV3_1G014510' => 'csa', 'CsaV3_2G034880' => 'csa', 'CsaV3_6G014760' => 'csa', 'CsaV3_6G021500' => 'csa', 'CsaV3_6G048980' => 'csa', 'CSS0002511' => 'camsi', 'CSS0007556' => 'camsi', 'CSS0008532' => 'camsi', 'CSS0009709' => 'camsi', 'CSS0010486' => 'camsi', 'CSS0016768' => 'camsi', 'CSS0023512' => 'camsi', 'CSS0025341' => 'camsi', 'CSS0027999' => 'camsi', 'CSS0028944' => 'camsi', 'CSS0032292' => 'camsi', 'CSS0032464' => 'camsi', 'CSS0037153' => 'camsi', 'CSS0039256' => 'camsi', 'CSS0048392' => 'camsi', 'CSS0050458' => 'camsi', 'DCAR_004224' => 'dca', 'DCAR_006147' => 'dca', 'DCAR_006465' => 'dca', 'DCAR_008159' => 'dca', 'DCAR_012164' => 'dca', 'DCAR_019764' => 'dca', 'Dinv05418' => 'din', 'Dinv10839' => 'din', 'Dinv12521' => 'din', 'Dinv13900' => 'din', 'Dinv29426' => 'din', 'Duzib150G0263' => 'dzi', 'Duzib168G1178' => 'dzi', 'Duzib168G1924' => 'dzi', 'Duzib170G0299' => 'dzi', 'Duzib170G0813' => 'dzi', 'Duzib235G1128' => 'dzi', 'Duzib248G1060' => 'dzi', 'ECA232G1910' => 'eca', 'ECA233G4621' => 'eca', 'ECA238G1216' => 'eca', 'ECA238G1784' => 'eca', 'ECA248G1242' => 'eca', 'EL10Ac8g20071' => 'bvu', 'EL10Ac9g21086' => 'bvu', 'EL10Ac9g22407' => 'bvu', 'EL10Ac9g22412' => 'bvu', 'Eucgr.A01119' => 'egr', 'Eucgr.E04043' => 'egr', 'Eucgr.J00428' => 'egr', 'Eucgr.J00958' => 'egr', 'FAN11G3091' => 'fan', 'FAN11G3651' => 'fan', 'FAN16G2566' => 'fan', 'FAN21G3155' => 'fan', 'FAN21G3400' => 'fan', 'FAN21G3543' => 'fan', 'FAN25G0234' => 'fan', 'FAN25G1422' => 'fan', 'FAN25G3392' => 'fan', 'FvH4_3g01940' => 'fve', 'FvH4_3g29870' => 'fve', 'FvH4_3g33680' => 'fve', 'Glyma.09G004200' => 'gma', 'Glyma.11G151288' => 'gma', 'Glyma.11G189100' => 'gma', 'Glyma.12G072500' => 'gma', 'Glyma.12G085500' => 'gma', 'Glyma.12G181800' => 'gma', 'Glyma.12G193000' => 'gma', 'Glyma.13G309300' => 'gma', 'Glyma.13G319000' => 'gma', 'Glyma.17G012600' => 'gma', 'Gohir.A06G148600' => 'ghi', 'Gohir.A07G115800' => 'ghi', 'Gohir.A08G003600' => 'ghi', 'Gohir.A09G093300' => 'ghi', 'Gohir.A09G105400' => 'ghi', 'Gohir.A09G105500' => 'ghi', 'Gohir.D06G154600' => 'ghi', 'Gohir.D07G120200' => 'ghi', 'Gohir.D08G013900' => 'ghi', 'Gohir.D09G093100' => 'ghi', 'Gohir.D09G102200' => 'ghi', 'Gohir.D09G102300' => 'ghi', 'Gorai.001G129400' => 'gra', 'Gorai.004G008200' => 'gra', 'Gorai.006G109800' => 'gra', 'Gorai.006G119500' => 'gra', 'Gorai.006G121300' => 'gra', 'Gorai.010G180700' => 'gra', 'GSVIVG01012716001' => 'vvi', 'GSVIVG01025118001' => 'vvi', 'GSVIVG01030439001' => 'vvi', 'GSVIVG01031397001' => 'vvi', 'HanXRQChr01g0004201' => 'han', 'HanXRQChr02g0054941' => 'han', 'HanXRQChr05g0141811' => 'han', 'HanXRQChr07g0197751' => 'han', 'HanXRQChr11g0346691' => 'han', 'HanXRQChr13g0396971' => 'han', 'HanXRQChr14g0432951' => 'han', 'HanXRQChr14g0452001' => 'han', 'HanXRQChr15g0496681' => 'han', 'HanXRQChr17g0557491' => 'han', 'HanXRQChr17g0557501' => 'han', 'Haze_06809' => 'cav', 'Haze_12852' => 'cav', 'Haze_15850' => 'cav', 'Haze_23446' => 'cav', 'Haze_23942' => 'cav', 'Haze_23943' => 'cav', 'Hma1.2p1_0091F.1_g046450' => 'hma', 'Hma1.2p1_0128F.1_g059910' => 'hma', 'Hma1.2p1_0249F.1_g102260' => 'hma', 'Hma1.2p1_0453F.1_g156190' => 'hma', 'Hma1.2p1_0695F.1_g204380' => 'hma', 'Hma1.2p1_0749F.1_g212650' => 'hma', 'Hma1.2p1_2156F.1_g315420' => 'hma', 'Hma1.2p1_2686F.1_g326940' => 'hma', 'HPP92_006428' => 'vpl', 'HPP92_012069' => 'vpl', 'HPP92_014129' => 'vpl', 'HPP92_014133' => 'vpl', 'HPP92_017315' => 'vpl', 'HPP92_026445' => 'vpl', 'HPP92_026446' => 'vpl', 'Hund00774' => 'sun', 'Hund07682' => 'sun', 'Hund21413' => 'sun', 'Hund23462' => 'sun', 'Hund23463' => 'sun', 'Lalb_Chr03g0027911' => 'lal', 'Lalb_Chr13g0304271' => 'lal', 'Lalb_Chr19g0137471' => 'lal', 'Lalb_Chr22g0350651' => 'lal', 'Lalb_Chr24g0395151' => 'lal', 'Lj1A1231T40' => 'lonja', 'Lj1A221T48' => 'lonja', 'Lj1C924T12' => 'lonja', 'Lj2C993G6' => 'lonja', 'Lj3g0005790' => 'lja', 'Lj3g0015432' => 'lja', 'Lj3g0017722' => 'lja', 'Lj3g0018497' => 'lja', 'Lj4g0025071' => 'lja', 'Lsat_1_v5_gn_1_129680' => 'lsa', 'Lsat_1_v5_gn_2_25321' => 'lsa', 'Lsat_1_v5_gn_2_95461' => 'lsa', 'Lsat_1_v5_gn_4_159620' => 'lsa', 'Lsat_1_v5_gn_6_41301' => 'lsa', 'Lsat_1_v5_gn_6_74660' => 'lsa', 'Lsat_1_v5_gn_7_11520' => 'lsa', 'Lsat_1_v5_gn_9_67680' => 'lsa', 'Manes.04G008300' => 'mes', 'Manes.04G008400' => 'mes', 'Manes.04G026500' => 'mes', 'Manes.10G135300' => 'mes', 'Manes.11G157300' => 'mes', 'Manes.12G074000' => 'mes', 'Manes.16G006200' => 'mes', 'Manes.17G026400' => 'mes', 'Mapoly0024s0086' => 'mpo', 'Mapoly0024s0087' => 'mpo', 'Mapoly0071s0057' => 'mpo', 'Mapoly0204s0012' => 'mpo', 'MBI04_g37681_MAGBIO' => 'mbi', 'MBI05_g17779_MAGBIO' => 'mbi', 'MBI12_g31184_MAGBIO' => 'mbi', 'MBI17_g11083_MAGBIO' => 'mbi', 'MBI18_g03883_MAGBIO' => 'mbi', 'MBI18_g28940_MAGBIO' => 'mbi', 'MCO01G690' => 'mco', 'MD03G1109900' => 'mdo', 'MD03G1134800' => 'mdo', 'MD05G1348000' => 'mdo', 'MD10G1322400' => 'mdo', 'MD11G1123300' => 'mdo', 'MD11G1157600' => 'mdo', 'Medtr2g084875' => 'mtr', 'Medtr2g088130' => 'mtr', 'Medtr4g055310' => 'mtr', 'Medtr4g061070' => 'mtr', 'Medtr4g132250' => 'mtr', 'MELO3C004795.2' => 'cme', 'MELO3C004797.2' => 'cme', 'MELO3C007396.2' => 'cme', 'MELO3C019277.2' => 'cme', 'MELO3C021449.2' => 'cme', 'MELO3C025736.2' => 'cme', 'Migut.D02175' => 'egut', 'Migut.H01573' => 'egut', 'Migut.M01327' => 'egut', 'Migut.N02513' => 'egut', 'MSTRG.14638' => 'ama', 'MSTRG.18632' => 'ama', 'MSTRG.7203' => 'ama', 'Nitab4.5_0000533g0140' => 'nta', 'Nitab4.5_0000888g0150' => 'nta', 'Nitab4.5_0001453g0040' => 'nta', 'Nitab4.5_0002827g0090' => 'nta', 'Nitab4.5_0003082g0040' => 'nta', 'Nitab4.5_0007799g0040' => 'nta', 'Nitab4.5_0008983g0010' => 'nta', 'Nitab4.5_0009017g0020' => 'nta', 'Nn1g02132' => 'nnu', 'Nn1g03492' => 'nnu', 'Nn1g03493' => 'nnu', 'Nn1g03494' => 'nnu', 'Nn1g07164' => 'nnu', 'Nn1g07291' => 'nnu', 'Nn2g10655' => 'nnu', 'Nn2g11652' => 'nnu', 'Nn2g14008' => 'nnu', 'Nn3g17476' => 'nnu', 'Nn3g17477' => 'nnu', 'Nn4g22370' => 'nnu', 'Nn4g25255' => 'nnu', 'Nn5g27755' => 'nnu', 'Nn6g34260' => 'nnu', 'Nn6g35041' => 'nnu', 'Oeu005924.1' => 'oeu', 'Oeu008383.1' => 'oeu', 'Oeu014928.1' => 'oeu', 'Oeu019889.1' => 'oeu', 'Oeu022271.1' => 'oeu', 'Oeu025271.1' => 'oeu', 'Oeu036302.1' => 'oeu', 'Oeu044100.1' => 'oeu', 'Os01g0528300' => 'osa', 'Os03g0286200' => 'osa', 'Os04g0406600' => 'osa', 'Os07g0512000' => 'osa', 'Os07g0694600' => 'osa', 'Os08g0411000' => 'osa', 'Os09g0565700' => 'osa', 'Os09g0566050' => 'osa', 'Os10g0523700' => 'osa', 'Peaxi162Scf00002g00514' => 'pax', 'Peaxi162Scf00047g01817' => 'pax', 'Peaxi162Scf00114g00001' => 'pax', 'Peaxi162Scf00147g00613' => 'pax', 'Peaxi162Scf00389g00425' => 'pax', 'PGR042G1139' => 'pgr', 'PGR042G3273' => 'pgr', 'PGR102G2180' => 'pgr', 'PGR119G0234' => 'pgr', 'PGR119G0668' => 'pgr', 'PGSC0003DMG400007122' => 'stu', 'PGSC0003DMG400016478' => 'stu', 'PGSC0003DMG400025374' => 'stu', 'PGSC0003DMG400026536' => 'stu', 'Phvul.003G079600' => 'pvu', 'Phvul.005G115600' => 'pvu', 'Phvul.005G127100' => 'pvu', 'Phvul.006G149500' => 'pvu', 'Phvul.006G149600' => 'pvu', 'Phvul.011G071800' => 'pvu', 'Phvul.011G090400' => 'pvu', 'Potri.004G013400' => 'ptr', 'Potri.004G188100' => 'ptr', 'Potri.008G195500' => 'ptr', 'Potri.009G148800' => 'ptr', 'Potri.011G004700' => 'ptr', 'Pp3c17_22810' => 'ppa', 'Pp3c18_4480' => 'ppa', 'Pp3c19_13030' => 'ppa', 'Pp3c1_33620' => 'ppa', 'Pp3c2_9380' => 'ppa', 'PRCOL_00001023' => 'pco', 'Prupe.3G216300' => 'ppe', 'Prupe.4G019500' => 'ppe', 'Prupe.6G092500' => 'ppe', 'Prupe.6G119200' => 'ppe', 'Psat0s1945g0080' => 'psa', 'Psat0s4167g0040' => 'psa', 'Psat1g185800' => 'psa', 'Psat4g006440' => 'psa', 'Psat4g006480' => 'psa', 'Psat4g168120' => 'psa', 'Psat5g255680' => 'psa', 'Psat5g261760' => 'psa', 'Psat7g222120' => 'psa', 'PSO063G7252' => 'pso', 'PSO170G4778' => 'pso', 'PSO210G2249' => 'pso', 'PSO339G2411' => 'pso', 'PSO339G2457' => 'pso', 'PSO339G2854' => 'pso', 'PSO339G4288' => 'pso', 'PSO339G4615' => 'pso', 'PSO384G2796' => 'pso', 'PSO384G2940' => 'pso', 'PSO384G4227' => 'pso', 'PSO478G1425' => 'pso', 'PSO541G3863' => 'pso', 'PSO675G0507' => 'pso', 'PSO782G0338' => 'pso', 'PSO832G0644' => 'pso', 'QL01p013664' => 'qlo', 'QL01p036598' => 'qlo', 'QL05p072984' => 'qlo', 'QL08p005768' => 'qlo', 'QL08p032743' => 'qlo', 'QL93p0073_0439' => 'qlo', 'QL93p0073_0444' => 'qlo', 'RcHm_v2.0_Chr5g0002851' => 'rch', 'RcHm_v2.0_Chr5g0055201' => 'rch', 'RcHm_v2.0_Chr5g0061191' => 'rch', 'RcHm_v2.0_Chr7g0203231' => 'rch', 'Rhsim01G0208100' => 'rsi', 'Rhsim01G0208200' => 'rsi', 'Rhsim02G0106500' => 'rsi', 'Rhsim03G0107900' => 'rsi', 'Rhsim06G0163400' => 'rsi', 'Rhsim13G0105200' => 'rsi', 'Sabra04G0006300' => 'sbr', 'Sabra04G0127000' => 'sbr', 'Sabra08G0148700' => 'sbr', 'Sabra09G0117400' => 'sbr', 'SalBow1G3326' => 'sbo', 'SalBow3G3228' => 'sbo', 'SalBow6G1634' => 'sbo', 'SalBow6G3603' => 'sbo', 'SalBow6G5266' => 'sbo', 'SalBow7G2265' => 'sbo', 'SalBow8G0850' => 'sbo', 'SalBow8G2592' => 'sbo', 'Sc05g0009240' => 'sci', 'Sc12g0002300' => 'sci', 'Sc21g0000100' => 'sci', 'Sc21g0004720' => 'sci', 'Sed0002949' => 'sed', 'Sed0004114' => 'sed', 'Sed0004306' => 'sed', 'Sed0006172' => 'sed', 'Sed0008413' => 'sed', 'Sed0013809' => 'sed', 'Sed0019556' => 'sed', 'SEGI_03570' => 'sgi', 'SEGI_07859' => 'sgi', 'SEGI_15042' => 'sgi', 'SEGI_16263' => 'sgi', 'SEGI_16552' => 'sgi', 'SEGI_24331' => 'sgi', 'SEGI_27316' => 'sgi', 'SEGI_29521' => 'sgi', 'SEGI_41342' => 'sgi', 'SGA_v2.0_scaffold27G11617' => 'sas', 'SGA_v2.0_scaffold316G48428' => 'sas', 'SGA_v2.0_scaffold49G18261' => 'sas', 'SGA_v2.0_scaffold7G03831' => 'sas', 'SGA_v2.0_scaffold93G28359' => 'sas', 'SHI02210' => 'shi', 'SHI06028' => 'shi', 'SHI06321' => 'shi', 'SMO111G0012' => 'smo', 'SMO228G0080' => 'smo', 'SMO356G0756' => 'smo', 'Solyc02g080620.3' => 'sly', 'Solyc06g074530.1' => 'sly', 'Solyc11g066890.1' => 'sly', 'Solyc11g072520.3' => 'sly', 'Sopen02g025330' => 'spe', 'Sopen06g031000' => 'spe', 'Sopen09g008240' => 'spe', 'Sopen09g025210' => 'spe', 'Sopen11g026600' => 'spe', 'Sopen11g030170' => 'spe', 'Sp1g10420' => 'spa', 'Sp3g06570' => 'spa', 'Sp4g10660' => 'spa', 'Sp5g16460' => 'spa', 'Sp6g22710' => 'spa', 'TAR365G0112' => 'tar', 'TAR369G0717' => 'tar', 'TAR374G0976' => 'tar', 'TAR623G1128' => 'tar', 'TAR626G1937' => 'tar', 'TAR627G0123' => 'tar', 'TAR628G0305' => 'tar', 'TAR636G1176' => 'tar', 'TAR636G2442' => 'tar', 'THA.LOC104800556' => 'tha', 'THA.LOC104809501' => 'tha', 'THA.LOC104815126' => 'tha', 'THA.LOC104815732' => 'tha', 'THA.LOC104823528' => 'tha', 'Thecc.02G365600' => 'tca', 'Thecc.06G222300' => 'tca', 'Thecc.09G261800' => 'tca', 'Thecc.09G291400' => 'tca', 'Thhalv10003028m.g' => 'esa', 'Thhalv10007886m.g' => 'esa', 'Thhalv10016085m.g' => 'esa', 'Thhalv10016681m.g' => 'esa', 'Thhalv10020951m.g' => 'esa', 'TPR.G15598' => 'tpr', 'TPR.G29305' => 'tpr', 'TPR.G32395' => 'tpr', 'TPR.G36998' => 'tpr', 'TPR.G4227' => 'tpr', 'TWI18G1433' => 'twi', 'TWI31G0755' => 'twi', 'TWI38G0912' => 'twi', 'TWI75G1097' => 'twi', 'TWI75G1619' => 'twi', 'TWI79G1336' => 'twi', 'unitig_0.g943' => 'ugi', 'unitig_0.g944' => 'ugi', 'unitig_22.g6646' => 'ugi', 'unitig_37.g12681' => 'ugi', 'unitig_8.g3290' => 'ugi', 'vmacro03278' => 'vma', 'vmacro12197' => 'vma', 'vmacro14478' => 'vma', 'vmacro15787' => 'vma', 'vmacro15789' => 'vma', 'vmacro15790' => 'vma', 'vmacro15806' => 'vma', 'vmacro22907' => 'vma', 'vmacro22908' => 'vma', 'vmacro22909' => 'vma', 'vmacro23108' => 'vma', 'VMungo0540G0540' => 'vmu', 'VMungo0540G2468' => 'vmu', 'VMungo1080G0390' => 'vmu', 'VMungo1080G1165' => 'vmu', 'VMungo1127G0170' => 'vmu', 'VMungo1127G2099' => 'vmu', 'VMungo1215G3013' => 'vmu', 'Zm00001eb013110' => 'zma', 'Zm00001eb084260' => 'zma', 'Zm00001eb096110' => 'zma', 'Zm00001eb217510' => 'zma', 'Zm00001eb322550' => 'zma', 'Zm00001eb390770' => 'zma', 'Zm00001eb397170' => 'zma', 'Zm00001eb404610' => 'zma', 'Zm00001eb421790' => 'zma' ) $gf_id = 'HOM05D000911' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000911' ) $data_identifier = 'HOM05D000911' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 16, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 5, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 6, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 8, 'nnu' => (int) 16, 'oeu' => (int) 8, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 5, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 16, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421790' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000911', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27780' => 'bna', 'A03p35380' => 'bna', 'A04p21160' => 'bna', 'A05p40570' => 'bna', 'A06p26900' => 'bna', 'A08p33230' => 'bna', 'A09p65960' => 'bna', 'A10p18290' => 'bna', 'Aa31LG1G12990' => 'aar', 'Aa31LG1G2980' => 'aar', 'Aa31LG4G14320' => 'aar', 'Aa31LG7G11800' => 'aar', 'Aa31sc36G50' => 'aar', 'Aa31sc36G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3721' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5459' => 'aag', 'Actinidia03028' => 'ach', 'Actinidia03753' => 'ach', 'Actinidia04187' => 'ach', 'Actinidia05509' => 'ach', 'Actinidia24180' => 'ach', 'Actinidia26906' => 'ach', 'Actinidia37097' => 'ach', 'Actinidia38249' => 'ach', 'Ah.01g003470' => 'amhyb', 'Ah.01g004580' => 'amhyb', 'Ah.01g014850' => 'amhyb', 'Ah.01g016830' => 'amhyb', 'Ah.14g088000' => 'amhyb', 'AL1G22980' => 'aly', 'AL3G18990' => 'aly', 'AL4G22440' => 'aly', 'AL4G33180' => 'aly', 'AL5G22920' => 'aly', 'AL6G33660' => 'aly', 'AL8G20720' => 'aly', 'Aqoxy1G00935' => 'aox', 'Aqoxy1G02094' => 'aox', 'Aqoxy2G01239' => 'aox', 'Aqoxy4G01870' => 'aox', 'Aqoxy7G00450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.36ZVTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71EM27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5D6C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH3WRE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3NCM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RIM768' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YB5YRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z36GDV' => 'arhy', 'AT1G08250' => 'ath', 'AT1G11790' => 'ath', 'AT2G27820' => 'ath', 'AT3G07630' => 'ath', 'AT3G44720' => 'ath', 'AT5G22630' => 'ath', 'ATR0693G304' => 'atr', 'ATR0794G109' => 'atr', 'ATR0820G120' => 'atr', 'ATR1159G064' => 'atr', 'Atru.chr10.2239' => 'acertr', 'Atru.chr3.3371' => 'acertr', 'Atru.chr6.3202' => 'acertr', 'AUR62006499' => 'cqu', 'AUR62012718' => 'cqu', 'AUR62021938' => 'cqu', 'AUR62023932' => 'cqu', 'AUR62025034' => 'cqu', 'AUR62025035' => 'cqu', 'AUR62038307' => 'cqu', 'AUR62043466' => 'cqu', 'BcaB02g10748' => 'bca', 'BcaB03g13231' => 'bca', 'BcaB03g14689' => 'bca', 'BcaB05g22716' => 'bca', 'BcaB06g28172' => 'bca', 'BcaB08g36413' => 'bca', 'BcaC01g02186' => 'bca', 'BcaC01g04272' => 'bca', 'BcaC02g08080' => 'bca', 'BcaC02g08227' => 'bca', 'BcaC03g13901' => 'bca', 'BcaC04g19593' => 'bca', 'BcaC04g20874' => 'bca', 'BcaC05g29557' => 'bca', 'BcaC06g35505' => 'bca', 'BcaC07g41954' => 'bca', 'BcaC07g41955' => 'bca', 'BcaC07g41956' => 'bca', 'BcaC07g42519' => 'bca', 'BcaC07g42520' => 'bca', 'BcaC07g42523' => 'bca', 'BcaC07g42524' => 'bca', 'BcaC07g42525' => 'bca', 'BcaC08g47480' => 'bca', 'BcaC08g47481' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00530' => 'bna', 'BolC2t07178H' => 'bol', 'BolC3t16567H' => 'bol', 'BolC4t27234H' => 'bol', 'BolC5t29728H' => 'bol', 'BolC5t34622H' => 'bol', 'BolC6t40321H' => 'bol', 'BolC7t42028H' => 'bol', 'BolC8t49125H' => 'bol', 'BolC8t52538H' => 'bol', 'BolC8t52539H' => 'bol', 'BolC9t56681H' => 'bol', 'BolC9t58266H' => 'bol', 'BolSC21t60294H' => 'bol', 'BraA02t05670Z' => 'bra', 'BraA03t12716Z' => 'bra', 'BraA04t17685Z' => 'bra', 'BraA05t22788Z' => 'bra', 'BraA06t24032Z' => 'bra', 'BraA06t25625Z' => 'bra', 'BraA07t27930Z' => 'bra', 'BraA08t35242Z' => 'bra', 'BraA09t38609Z' => 'bra', 'BraA10t43905Z' => 'bra', 'C02p11060' => 'bna', 'C03p42990' => 'bna', 'C03p67310' => 'bna', 'C04p56990' => 'bna', 'C04p58660' => 'bna', 'C05p09890' => 'bna', 'C05p59680' => 'bna', 'C06p19830' => 'bna', 'C06p53040' => 'bna', 'C07p15230' => 'bna', 'C08p50070' => 'bna', 'C08p50090' => 'bna', 'C09p38330' => 'bna', 'C09p53940' => 'bna', 'CAN.G1014.1' => 'can', 'CAN.G644.30' => 'can', 'CAN.G84.47' => 'can', 'CAN.G919.8' => 'can', 'CANSAT54G0113' => 'cansat', 'CANSAT54G1286' => 'cansat', 'CANSAT64G1020' => 'cansat', 'CARHR008080' => 'chi', 'CARHR008090' => 'chi', 'CARHR012130' => 'chi', 'CARHR038390' => 'chi', 'CARHR082330' => 'chi', 'CARHR120520' => 'chi', 'CARHR151470' => 'chi', 'CARHR190950' => 'chi', 'Carub.0001s0760' => 'cru', 'Carub.0001s1146' => 'cru', 'Carub.0003s0721' => 'cru', 'Carub.0004s0858' => 'cru', 'Carub.0005s1040' => 'cru', 'Carub.0006s2035' => 'cru', 'Carub.0015s0005' => 'cru', 'Ca_01607_v3' => 'car', 'Ca_01677_v3' => 'car', 'Ca_06087_v3' => 'car', 'Ca_19238_v3' => 'car', 'Ca_19373_v3' => 'car', 'Ca_21079_v3' => 'car', 'CBR_g54016' => 'cbr', 'CBR_g54018' => 'cbr', 'CBR_g54020' => 'cbr', 'Cc01_g09780' => 'ccan', 'Cc01_g11680' => 'ccan', 'Cc02_g15610' => 'ccan', 'Cc05_g04350' => 'ccan', 'Cc09_g01580' => 'ccan', 'CDE01G0795' => 'cde', 'CDE02G2024' => 'cde', 'CDE02G2260' => 'cde', 'CDE02G4561' => 'cde', 'CDE05G2733' => 'cde', 'CDE05G3422' => 'cde', 'CDE06G2003' => 'cde', 'CDE08G0576' => 'cde', 'CDE09G0048' => 'cde', 'CDE11G0805' => 'cde', 'Cfa003644' => 'cfa', 'Cfa006290' => 'cfa', 'Cfa010080' => 'cfa', 'Cfa011376' => 'cfa', 'Cfa011576' => 'cfa', 'Cfa011577' => 'cfa', 'Cfa014389' => 'cfa', 'Ciclev10006044m.g' => 'ccl', 'Ciclev10006954m.g' => 'ccl', 'Ciclev10015131m.g' => 'ccl', 'Ciclev10015580m.g' => 'ccl', 'Ciclev10028359m.g' => 'ccl', 'Ciclev10028573m.g' => 'ccl', 'CiPaw.03G159300' => 'cil', 'CiPaw.04G115100' => 'cil', 'CiPaw.09G092800' => 'cil', 'CiPaw.10G071800' => 'cil', 'CiPaw.13G105800' => 'cil', 'CiPaw.13G141000' => 'cil', 'CiPaw.14G103400' => 'cil', 'ClCG01G012700' => 'cla', 'ClCG01G012720' => 'cla', 'ClCG01G021920' => 'cla', 'ClCG02G008870' => 'cla', 'ClCG02G020840' => 'cla', 'ClCG02G021930' => 'cla', 'COL.COLO4_19302' => 'col', 'COL.COLO4_25262' => 'col', 'COL.COLO4_31788' => 'col', 'Cpa.g.c34684' => 'cpa', 'Cpa.g.c36520.1' => 'cpa', 'Cpa.g.c45626' => 'cpa', 'Cpa.g.sc121.17' => 'cpa', 'Cpa.g.sc13.22' => 'cpa', 'Cpa.g.sc87.88' => 'cpa', 'Cre06.g261800' => 'cre', 'CsaV3_1G014500' => 'csa', 'CsaV3_1G014510' => 'csa', 'CsaV3_2G034880' => 'csa', 'CsaV3_6G014760' => 'csa', 'CsaV3_6G021500' => 'csa', 'CsaV3_6G048980' => 'csa', 'CSS0002511' => 'camsi', 'CSS0007556' => 'camsi', 'CSS0008532' => 'camsi', 'CSS0009709' => 'camsi', 'CSS0010486' => 'camsi', 'CSS0016768' => 'camsi', 'CSS0023512' => 'camsi', 'CSS0025341' => 'camsi', 'CSS0027999' => 'camsi', 'CSS0028944' => 'camsi', 'CSS0032292' => 'camsi', 'CSS0032464' => 'camsi', 'CSS0037153' => 'camsi', 'CSS0039256' => 'camsi', 'CSS0048392' => 'camsi', 'CSS0050458' => 'camsi', 'DCAR_004224' => 'dca', 'DCAR_006147' => 'dca', 'DCAR_006465' => 'dca', 'DCAR_008159' => 'dca', 'DCAR_012164' => 'dca', 'DCAR_019764' => 'dca', 'Dinv05418' => 'din', 'Dinv10839' => 'din', 'Dinv12521' => 'din', 'Dinv13900' => 'din', 'Dinv29426' => 'din', 'Duzib150G0263' => 'dzi', 'Duzib168G1178' => 'dzi', 'Duzib168G1924' => 'dzi', 'Duzib170G0299' => 'dzi', 'Duzib170G0813' => 'dzi', 'Duzib235G1128' => 'dzi', 'Duzib248G1060' => 'dzi', 'ECA232G1910' => 'eca', 'ECA233G4621' => 'eca', 'ECA238G1216' => 'eca', 'ECA238G1784' => 'eca', 'ECA248G1242' => 'eca', 'EL10Ac8g20071' => 'bvu', 'EL10Ac9g21086' => 'bvu', 'EL10Ac9g22407' => 'bvu', 'EL10Ac9g22412' => 'bvu', 'Eucgr.A01119' => 'egr', 'Eucgr.E04043' => 'egr', 'Eucgr.J00428' => 'egr', 'Eucgr.J00958' => 'egr', 'FAN11G3091' => 'fan', 'FAN11G3651' => 'fan', 'FAN16G2566' => 'fan', 'FAN21G3155' => 'fan', 'FAN21G3400' => 'fan', 'FAN21G3543' => 'fan', 'FAN25G0234' => 'fan', 'FAN25G1422' => 'fan', 'FAN25G3392' => 'fan', 'FvH4_3g01940' => 'fve', 'FvH4_3g29870' => 'fve', 'FvH4_3g33680' => 'fve', 'Glyma.09G004200' => 'gma', 'Glyma.11G151288' => 'gma', 'Glyma.11G189100' => 'gma', 'Glyma.12G072500' => 'gma', 'Glyma.12G085500' => 'gma', 'Glyma.12G181800' => 'gma', 'Glyma.12G193000' => 'gma', 'Glyma.13G309300' => 'gma', 'Glyma.13G319000' => 'gma', 'Glyma.17G012600' => 'gma', 'Gohir.A06G148600' => 'ghi', 'Gohir.A07G115800' => 'ghi', 'Gohir.A08G003600' => 'ghi', 'Gohir.A09G093300' => 'ghi', 'Gohir.A09G105400' => 'ghi', 'Gohir.A09G105500' => 'ghi', 'Gohir.D06G154600' => 'ghi', 'Gohir.D07G120200' => 'ghi', 'Gohir.D08G013900' => 'ghi', 'Gohir.D09G093100' => 'ghi', 'Gohir.D09G102200' => 'ghi', 'Gohir.D09G102300' => 'ghi', 'Gorai.001G129400' => 'gra', 'Gorai.004G008200' => 'gra', 'Gorai.006G109800' => 'gra', 'Gorai.006G119500' => 'gra', 'Gorai.006G121300' => 'gra', 'Gorai.010G180700' => 'gra', 'GSVIVG01012716001' => 'vvi', 'GSVIVG01025118001' => 'vvi', 'GSVIVG01030439001' => 'vvi', 'GSVIVG01031397001' => 'vvi', 'HanXRQChr01g0004201' => 'han', 'HanXRQChr02g0054941' => 'han', 'HanXRQChr05g0141811' => 'han', 'HanXRQChr07g0197751' => 'han', 'HanXRQChr11g0346691' => 'han', 'HanXRQChr13g0396971' => 'han', 'HanXRQChr14g0432951' => 'han', 'HanXRQChr14g0452001' => 'han', 'HanXRQChr15g0496681' => 'han', 'HanXRQChr17g0557491' => 'han', 'HanXRQChr17g0557501' => 'han', 'Haze_06809' => 'cav', 'Haze_12852' => 'cav', 'Haze_15850' => 'cav', 'Haze_23446' => 'cav', 'Haze_23942' => 'cav', 'Haze_23943' => 'cav', 'Hma1.2p1_0091F.1_g046450' => 'hma', 'Hma1.2p1_0128F.1_g059910' => 'hma', 'Hma1.2p1_0249F.1_g102260' => 'hma', 'Hma1.2p1_0453F.1_g156190' => 'hma', 'Hma1.2p1_0695F.1_g204380' => 'hma', 'Hma1.2p1_0749F.1_g212650' => 'hma', 'Hma1.2p1_2156F.1_g315420' => 'hma', 'Hma1.2p1_2686F.1_g326940' => 'hma', 'HPP92_006428' => 'vpl', 'HPP92_012069' => 'vpl', 'HPP92_014129' => 'vpl', 'HPP92_014133' => 'vpl', 'HPP92_017315' => 'vpl', 'HPP92_026445' => 'vpl', 'HPP92_026446' => 'vpl', 'Hund00774' => 'sun', 'Hund07682' => 'sun', 'Hund21413' => 'sun', 'Hund23462' => 'sun', 'Hund23463' => 'sun', 'Lalb_Chr03g0027911' => 'lal', 'Lalb_Chr13g0304271' => 'lal', 'Lalb_Chr19g0137471' => 'lal', 'Lalb_Chr22g0350651' => 'lal', 'Lalb_Chr24g0395151' => 'lal', 'Lj1A1231T40' => 'lonja', 'Lj1A221T48' => 'lonja', 'Lj1C924T12' => 'lonja', 'Lj2C993G6' => 'lonja', 'Lj3g0005790' => 'lja', 'Lj3g0015432' => 'lja', 'Lj3g0017722' => 'lja', 'Lj3g0018497' => 'lja', 'Lj4g0025071' => 'lja', 'Lsat_1_v5_gn_1_129680' => 'lsa', 'Lsat_1_v5_gn_2_25321' => 'lsa', 'Lsat_1_v5_gn_2_95461' => 'lsa', 'Lsat_1_v5_gn_4_159620' => 'lsa', 'Lsat_1_v5_gn_6_41301' => 'lsa', 'Lsat_1_v5_gn_6_74660' => 'lsa', 'Lsat_1_v5_gn_7_11520' => 'lsa', 'Lsat_1_v5_gn_9_67680' => 'lsa', 'Manes.04G008300' => 'mes', 'Manes.04G008400' => 'mes', 'Manes.04G026500' => 'mes', 'Manes.10G135300' => 'mes', 'Manes.11G157300' => 'mes', 'Manes.12G074000' => 'mes', 'Manes.16G006200' => 'mes', 'Manes.17G026400' => 'mes', 'Mapoly0024s0086' => 'mpo', 'Mapoly0024s0087' => 'mpo', 'Mapoly0071s0057' => 'mpo', 'Mapoly0204s0012' => 'mpo', 'MBI04_g37681_MAGBIO' => 'mbi', 'MBI05_g17779_MAGBIO' => 'mbi', 'MBI12_g31184_MAGBIO' => 'mbi', 'MBI17_g11083_MAGBIO' => 'mbi', 'MBI18_g03883_MAGBIO' => 'mbi', 'MBI18_g28940_MAGBIO' => 'mbi', 'MCO01G690' => 'mco', 'MD03G1109900' => 'mdo', 'MD03G1134800' => 'mdo', 'MD05G1348000' => 'mdo', 'MD10G1322400' => 'mdo', 'MD11G1123300' => 'mdo', 'MD11G1157600' => 'mdo', 'Medtr2g084875' => 'mtr', 'Medtr2g088130' => 'mtr', 'Medtr4g055310' => 'mtr', 'Medtr4g061070' => 'mtr', 'Medtr4g132250' => 'mtr', 'MELO3C004795.2' => 'cme', 'MELO3C004797.2' => 'cme', 'MELO3C007396.2' => 'cme', 'MELO3C019277.2' => 'cme', 'MELO3C021449.2' => 'cme', 'MELO3C025736.2' => 'cme', 'Migut.D02175' => 'egut', 'Migut.H01573' => 'egut', 'Migut.M01327' => 'egut', 'Migut.N02513' => 'egut', 'MSTRG.14638' => 'ama', 'MSTRG.18632' => 'ama', 'MSTRG.7203' => 'ama', 'Nitab4.5_0000533g0140' => 'nta', 'Nitab4.5_0000888g0150' => 'nta', 'Nitab4.5_0001453g0040' => 'nta', 'Nitab4.5_0002827g0090' => 'nta', 'Nitab4.5_0003082g0040' => 'nta', 'Nitab4.5_0007799g0040' => 'nta', 'Nitab4.5_0008983g0010' => 'nta', 'Nitab4.5_0009017g0020' => 'nta', 'Nn1g02132' => 'nnu', 'Nn1g03492' => 'nnu', 'Nn1g03493' => 'nnu', 'Nn1g03494' => 'nnu', 'Nn1g07164' => 'nnu', 'Nn1g07291' => 'nnu', 'Nn2g10655' => 'nnu', 'Nn2g11652' => 'nnu', 'Nn2g14008' => 'nnu', 'Nn3g17476' => 'nnu', 'Nn3g17477' => 'nnu', 'Nn4g22370' => 'nnu', 'Nn4g25255' => 'nnu', 'Nn5g27755' => 'nnu', 'Nn6g34260' => 'nnu', 'Nn6g35041' => 'nnu', 'Oeu005924.1' => 'oeu', 'Oeu008383.1' => 'oeu', 'Oeu014928.1' => 'oeu', 'Oeu019889.1' => 'oeu', 'Oeu022271.1' => 'oeu', 'Oeu025271.1' => 'oeu', 'Oeu036302.1' => 'oeu', 'Oeu044100.1' => 'oeu', 'Os01g0528300' => 'osa', 'Os03g0286200' => 'osa', 'Os04g0406600' => 'osa', 'Os07g0512000' => 'osa', 'Os07g0694600' => 'osa', 'Os08g0411000' => 'osa', 'Os09g0565700' => 'osa', 'Os09g0566050' => 'osa', 'Os10g0523700' => 'osa', 'Peaxi162Scf00002g00514' => 'pax', 'Peaxi162Scf00047g01817' => 'pax', 'Peaxi162Scf00114g00001' => 'pax', 'Peaxi162Scf00147g00613' => 'pax', 'Peaxi162Scf00389g00425' => 'pax', 'PGR042G1139' => 'pgr', 'PGR042G3273' => 'pgr', 'PGR102G2180' => 'pgr', 'PGR119G0234' => 'pgr', 'PGR119G0668' => 'pgr', 'PGSC0003DMG400007122' => 'stu', 'PGSC0003DMG400016478' => 'stu', 'PGSC0003DMG400025374' => 'stu', 'PGSC0003DMG400026536' => 'stu', 'Phvul.003G079600' => 'pvu', 'Phvul.005G115600' => 'pvu', 'Phvul.005G127100' => 'pvu', 'Phvul.006G149500' => 'pvu', 'Phvul.006G149600' => 'pvu', 'Phvul.011G071800' => 'pvu', 'Phvul.011G090400' => 'pvu', 'Potri.004G013400' => 'ptr', 'Potri.004G188100' => 'ptr', 'Potri.008G195500' => 'ptr', 'Potri.009G148800' => 'ptr', 'Potri.011G004700' => 'ptr', 'Pp3c17_22810' => 'ppa', 'Pp3c18_4480' => 'ppa', 'Pp3c19_13030' => 'ppa', 'Pp3c1_33620' => 'ppa', 'Pp3c2_9380' => 'ppa', 'PRCOL_00001023' => 'pco', 'Prupe.3G216300' => 'ppe', 'Prupe.4G019500' => 'ppe', 'Prupe.6G092500' => 'ppe', 'Prupe.6G119200' => 'ppe', 'Psat0s1945g0080' => 'psa', 'Psat0s4167g0040' => 'psa', 'Psat1g185800' => 'psa', 'Psat4g006440' => 'psa', 'Psat4g006480' => 'psa', 'Psat4g168120' => 'psa', 'Psat5g255680' => 'psa', 'Psat5g261760' => 'psa', 'Psat7g222120' => 'psa', 'PSO063G7252' => 'pso', 'PSO170G4778' => 'pso', 'PSO210G2249' => 'pso', 'PSO339G2411' => 'pso', 'PSO339G2457' => 'pso', 'PSO339G2854' => 'pso', 'PSO339G4288' => 'pso', 'PSO339G4615' => 'pso', 'PSO384G2796' => 'pso', 'PSO384G2940' => 'pso', 'PSO384G4227' => 'pso', 'PSO478G1425' => 'pso', 'PSO541G3863' => 'pso', 'PSO675G0507' => 'pso', 'PSO782G0338' => 'pso', 'PSO832G0644' => 'pso', 'QL01p013664' => 'qlo', 'QL01p036598' => 'qlo', 'QL05p072984' => 'qlo', 'QL08p005768' => 'qlo', 'QL08p032743' => 'qlo', 'QL93p0073_0439' => 'qlo', 'QL93p0073_0444' => 'qlo', 'RcHm_v2.0_Chr5g0002851' => 'rch', 'RcHm_v2.0_Chr5g0055201' => 'rch', 'RcHm_v2.0_Chr5g0061191' => 'rch', 'RcHm_v2.0_Chr7g0203231' => 'rch', 'Rhsim01G0208100' => 'rsi', 'Rhsim01G0208200' => 'rsi', 'Rhsim02G0106500' => 'rsi', 'Rhsim03G0107900' => 'rsi', 'Rhsim06G0163400' => 'rsi', 'Rhsim13G0105200' => 'rsi', 'Sabra04G0006300' => 'sbr', 'Sabra04G0127000' => 'sbr', 'Sabra08G0148700' => 'sbr', 'Sabra09G0117400' => 'sbr', 'SalBow1G3326' => 'sbo', 'SalBow3G3228' => 'sbo', 'SalBow6G1634' => 'sbo', 'SalBow6G3603' => 'sbo', 'SalBow6G5266' => 'sbo', 'SalBow7G2265' => 'sbo', 'SalBow8G0850' => 'sbo', 'SalBow8G2592' => 'sbo', 'Sc05g0009240' => 'sci', 'Sc12g0002300' => 'sci', 'Sc21g0000100' => 'sci', 'Sc21g0004720' => 'sci', 'Sed0002949' => 'sed', 'Sed0004114' => 'sed', 'Sed0004306' => 'sed', 'Sed0006172' => 'sed', 'Sed0008413' => 'sed', 'Sed0013809' => 'sed', 'Sed0019556' => 'sed', 'SEGI_03570' => 'sgi', 'SEGI_07859' => 'sgi', 'SEGI_15042' => 'sgi', 'SEGI_16263' => 'sgi', 'SEGI_16552' => 'sgi', 'SEGI_24331' => 'sgi', 'SEGI_27316' => 'sgi', 'SEGI_29521' => 'sgi', 'SEGI_41342' => 'sgi', 'SGA_v2.0_scaffold27G11617' => 'sas', 'SGA_v2.0_scaffold316G48428' => 'sas', 'SGA_v2.0_scaffold49G18261' => 'sas', 'SGA_v2.0_scaffold7G03831' => 'sas', 'SGA_v2.0_scaffold93G28359' => 'sas', 'SHI02210' => 'shi', 'SHI06028' => 'shi', 'SHI06321' => 'shi', 'SMO111G0012' => 'smo', 'SMO228G0080' => 'smo', 'SMO356G0756' => 'smo', 'Solyc02g080620.3' => 'sly', 'Solyc06g074530.1' => 'sly', 'Solyc11g066890.1' => 'sly', 'Solyc11g072520.3' => 'sly', 'Sopen02g025330' => 'spe', 'Sopen06g031000' => 'spe', 'Sopen09g008240' => 'spe', 'Sopen09g025210' => 'spe', 'Sopen11g026600' => 'spe', 'Sopen11g030170' => 'spe', 'Sp1g10420' => 'spa', 'Sp3g06570' => 'spa', 'Sp4g10660' => 'spa', 'Sp5g16460' => 'spa', 'Sp6g22710' => 'spa', 'TAR365G0112' => 'tar', 'TAR369G0717' => 'tar', 'TAR374G0976' => 'tar', 'TAR623G1128' => 'tar', 'TAR626G1937' => 'tar', 'TAR627G0123' => 'tar', 'TAR628G0305' => 'tar', 'TAR636G1176' => 'tar', 'TAR636G2442' => 'tar', 'THA.LOC104800556' => 'tha', 'THA.LOC104809501' => 'tha', 'THA.LOC104815126' => 'tha', 'THA.LOC104815732' => 'tha', 'THA.LOC104823528' => 'tha', 'Thecc.02G365600' => 'tca', 'Thecc.06G222300' => 'tca', 'Thecc.09G261800' => 'tca', 'Thecc.09G291400' => 'tca', 'Thhalv10003028m.g' => 'esa', 'Thhalv10007886m.g' => 'esa', 'Thhalv10016085m.g' => 'esa', 'Thhalv10016681m.g' => 'esa', 'Thhalv10020951m.g' => 'esa', 'TPR.G15598' => 'tpr', 'TPR.G29305' => 'tpr', 'TPR.G32395' => 'tpr', 'TPR.G36998' => 'tpr', 'TPR.G4227' => 'tpr', 'TWI18G1433' => 'twi', 'TWI31G0755' => 'twi', 'TWI38G0912' => 'twi', 'TWI75G1097' => 'twi', 'TWI75G1619' => 'twi', 'TWI79G1336' => 'twi', 'unitig_0.g943' => 'ugi', 'unitig_0.g944' => 'ugi', 'unitig_22.g6646' => 'ugi', 'unitig_37.g12681' => 'ugi', 'unitig_8.g3290' => 'ugi', 'vmacro03278' => 'vma', 'vmacro12197' => 'vma', 'vmacro14478' => 'vma', 'vmacro15787' => 'vma', 'vmacro15789' => 'vma', 'vmacro15790' => 'vma', 'vmacro15806' => 'vma', 'vmacro22907' => 'vma', 'vmacro22908' => 'vma', 'vmacro22909' => 'vma', 'vmacro23108' => 'vma', 'VMungo0540G0540' => 'vmu', 'VMungo0540G2468' => 'vmu', 'VMungo1080G0390' => 'vmu', 'VMungo1080G1165' => 'vmu', 'VMungo1127G0170' => 'vmu', 'VMungo1127G2099' => 'vmu', 'VMungo1215G3013' => 'vmu', 'Zm00001eb013110' => 'zma', 'Zm00001eb084260' => 'zma', 'Zm00001eb096110' => 'zma', 'Zm00001eb217510' => 'zma', 'Zm00001eb322550' => 'zma', 'Zm00001eb390770' => 'zma', 'Zm00001eb397170' => 'zma', 'Zm00001eb404610' => 'zma', 'Zm00001eb421790' => 'zma' ), 'gf_id' => 'HOM05D000911', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000911' ), 'data_identifier' => 'HOM05D000911', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000911', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27780' => 'bna', 'A03p35380' => 'bna', 'A04p21160' => 'bna', 'A05p40570' => 'bna', 'A06p26900' => 'bna', 'A08p33230' => 'bna', 'A09p65960' => 'bna', 'A10p18290' => 'bna', 'Aa31LG1G12990' => 'aar', 'Aa31LG1G2980' => 'aar', 'Aa31LG4G14320' => 'aar', 'Aa31LG7G11800' => 'aar', 'Aa31sc36G50' => 'aar', 'Aa31sc36G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3721' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5459' => 'aag', 'Actinidia03028' => 'ach', 'Actinidia03753' => 'ach', 'Actinidia04187' => 'ach', 'Actinidia05509' => 'ach', 'Actinidia24180' => 'ach', 'Actinidia26906' => 'ach', 'Actinidia37097' => 'ach', 'Actinidia38249' => 'ach', 'Ah.01g003470' => 'amhyb', 'Ah.01g004580' => 'amhyb', 'Ah.01g014850' => 'amhyb', 'Ah.01g016830' => 'amhyb', 'Ah.14g088000' => 'amhyb', 'AL1G22980' => 'aly', 'AL3G18990' => 'aly', 'AL4G22440' => 'aly', 'AL4G33180' => 'aly', 'AL5G22920' => 'aly', 'AL6G33660' => 'aly', 'AL8G20720' => 'aly', 'Aqoxy1G00935' => 'aox', 'Aqoxy1G02094' => 'aox', 'Aqoxy2G01239' => 'aox', 'Aqoxy4G01870' => 'aox', 'Aqoxy7G00450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.36ZVTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71EM27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5D6C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH3WRE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3NCM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RIM768' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YB5YRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z36GDV' => 'arhy', 'AT1G08250' => 'ath', 'AT1G11790' => 'ath', 'AT2G27820' => 'ath', 'AT3G07630' => 'ath', 'AT3G44720' => 'ath', 'AT5G22630' => 'ath', 'ATR0693G304' => 'atr', 'ATR0794G109' => 'atr', 'ATR0820G120' => 'atr', 'ATR1159G064' => 'atr', 'Atru.chr10.2239' => 'acertr', 'Atru.chr3.3371' => 'acertr', 'Atru.chr6.3202' => 'acertr', 'AUR62006499' => 'cqu', 'AUR62012718' => 'cqu', 'AUR62021938' => 'cqu', 'AUR62023932' => 'cqu', 'AUR62025034' => 'cqu', 'AUR62025035' => 'cqu', 'AUR62038307' => 'cqu', 'AUR62043466' => 'cqu', 'BcaB02g10748' => 'bca', 'BcaB03g13231' => 'bca', 'BcaB03g14689' => 'bca', 'BcaB05g22716' => 'bca', 'BcaB06g28172' => 'bca', 'BcaB08g36413' => 'bca', 'BcaC01g02186' => 'bca', 'BcaC01g04272' => 'bca', 'BcaC02g08080' => 'bca', 'BcaC02g08227' => 'bca', 'BcaC03g13901' => 'bca', 'BcaC04g19593' => 'bca', 'BcaC04g20874' => 'bca', 'BcaC05g29557' => 'bca', 'BcaC06g35505' => 'bca', 'BcaC07g41954' => 'bca', 'BcaC07g41955' => 'bca', 'BcaC07g41956' => 'bca', 'BcaC07g42519' => 'bca', 'BcaC07g42520' => 'bca', 'BcaC07g42523' => 'bca', 'BcaC07g42524' => 'bca', 'BcaC07g42525' => 'bca', 'BcaC08g47480' => 'bca', 'BcaC08g47481' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00530' => 'bna', 'BolC2t07178H' => 'bol', 'BolC3t16567H' => 'bol', 'BolC4t27234H' => 'bol', 'BolC5t29728H' => 'bol', 'BolC5t34622H' => 'bol', 'BolC6t40321H' => 'bol', 'BolC7t42028H' => 'bol', 'BolC8t49125H' => 'bol', 'BolC8t52538H' => 'bol', 'BolC8t52539H' => 'bol', 'BolC9t56681H' => 'bol', 'BolC9t58266H' => 'bol', 'BolSC21t60294H' => 'bol', 'BraA02t05670Z' => 'bra', 'BraA03t12716Z' => 'bra', 'BraA04t17685Z' => 'bra', 'BraA05t22788Z' => 'bra', 'BraA06t24032Z' => 'bra', 'BraA06t25625Z' => 'bra', 'BraA07t27930Z' => 'bra', 'BraA08t35242Z' => 'bra', 'BraA09t38609Z' => 'bra', 'BraA10t43905Z' => 'bra', 'C02p11060' => 'bna', 'C03p42990' => 'bna', 'C03p67310' => 'bna', 'C04p56990' => 'bna', 'C04p58660' => 'bna', 'C05p09890' => 'bna', 'C05p59680' => 'bna', 'C06p19830' => 'bna', 'C06p53040' => 'bna', 'C07p15230' => 'bna', 'C08p50070' => 'bna', 'C08p50090' => 'bna', 'C09p38330' => 'bna', 'C09p53940' => 'bna', 'CAN.G1014.1' => 'can', 'CAN.G644.30' => 'can', 'CAN.G84.47' => 'can', 'CAN.G919.8' => 'can', 'CANSAT54G0113' => 'cansat', 'CANSAT54G1286' => 'cansat', 'CANSAT64G1020' => 'cansat', 'CARHR008080' => 'chi', 'CARHR008090' => 'chi', 'CARHR012130' => 'chi', 'CARHR038390' => 'chi', 'CARHR082330' => 'chi', 'CARHR120520' => 'chi', 'CARHR151470' => 'chi', 'CARHR190950' => 'chi', 'Carub.0001s0760' => 'cru', 'Carub.0001s1146' => 'cru', 'Carub.0003s0721' => 'cru', 'Carub.0004s0858' => 'cru', 'Carub.0005s1040' => 'cru', 'Carub.0006s2035' => 'cru', 'Carub.0015s0005' => 'cru', 'Ca_01607_v3' => 'car', 'Ca_01677_v3' => 'car', 'Ca_06087_v3' => 'car', 'Ca_19238_v3' => 'car', 'Ca_19373_v3' => 'car', 'Ca_21079_v3' => 'car', 'CBR_g54016' => 'cbr', 'CBR_g54018' => 'cbr', 'CBR_g54020' => 'cbr', 'Cc01_g09780' => 'ccan', 'Cc01_g11680' => 'ccan', 'Cc02_g15610' => 'ccan', 'Cc05_g04350' => 'ccan', 'Cc09_g01580' => 'ccan', 'CDE01G0795' => 'cde', 'CDE02G2024' => 'cde', 'CDE02G2260' => 'cde', 'CDE02G4561' => 'cde', 'CDE05G2733' => 'cde', 'CDE05G3422' => 'cde', 'CDE06G2003' => 'cde', 'CDE08G0576' => 'cde', 'CDE09G0048' => 'cde', 'CDE11G0805' => 'cde', 'Cfa003644' => 'cfa', 'Cfa006290' => 'cfa', 'Cfa010080' => 'cfa', 'Cfa011376' => 'cfa', 'Cfa011576' => 'cfa', 'Cfa011577' => 'cfa', 'Cfa014389' => 'cfa', 'Ciclev10006044m.g' => 'ccl', 'Ciclev10006954m.g' => 'ccl', 'Ciclev10015131m.g' => 'ccl', 'Ciclev10015580m.g' => 'ccl', 'Ciclev10028359m.g' => 'ccl', 'Ciclev10028573m.g' => 'ccl', 'CiPaw.03G159300' => 'cil', 'CiPaw.04G115100' => 'cil', 'CiPaw.09G092800' => 'cil', 'CiPaw.10G071800' => 'cil', 'CiPaw.13G105800' => 'cil', 'CiPaw.13G141000' => 'cil', 'CiPaw.14G103400' => 'cil', 'ClCG01G012700' => 'cla', 'ClCG01G012720' => 'cla', 'ClCG01G021920' => 'cla', 'ClCG02G008870' => 'cla', 'ClCG02G020840' => 'cla', 'ClCG02G021930' => 'cla', 'COL.COLO4_19302' => 'col', 'COL.COLO4_25262' => 'col', 'COL.COLO4_31788' => 'col', 'Cpa.g.c34684' => 'cpa', 'Cpa.g.c36520.1' => 'cpa', 'Cpa.g.c45626' => 'cpa', 'Cpa.g.sc121.17' => 'cpa', 'Cpa.g.sc13.22' => 'cpa', 'Cpa.g.sc87.88' => 'cpa', 'Cre06.g261800' => 'cre', 'CsaV3_1G014500' => 'csa', 'CsaV3_1G014510' => 'csa', 'CsaV3_2G034880' => 'csa', 'CsaV3_6G014760' => 'csa', 'CsaV3_6G021500' => 'csa', 'CsaV3_6G048980' => 'csa', 'CSS0002511' => 'camsi', 'CSS0007556' => 'camsi', 'CSS0008532' => 'camsi', 'CSS0009709' => 'camsi', 'CSS0010486' => 'camsi', 'CSS0016768' => 'camsi', 'CSS0023512' => 'camsi', 'CSS0025341' => 'camsi', 'CSS0027999' => 'camsi', 'CSS0028944' => 'camsi', 'CSS0032292' => 'camsi', 'CSS0032464' => 'camsi', 'CSS0037153' => 'camsi', 'CSS0039256' => 'camsi', 'CSS0048392' => 'camsi', 'CSS0050458' => 'camsi', 'DCAR_004224' => 'dca', 'DCAR_006147' => 'dca', 'DCAR_006465' => 'dca', 'DCAR_008159' => 'dca', 'DCAR_012164' => 'dca', 'DCAR_019764' => 'dca', 'Dinv05418' => 'din', 'Dinv10839' => 'din', 'Dinv12521' => 'din', 'Dinv13900' => 'din', 'Dinv29426' => 'din', 'Duzib150G0263' => 'dzi', 'Duzib168G1178' => 'dzi', 'Duzib168G1924' => 'dzi', 'Duzib170G0299' => 'dzi', 'Duzib170G0813' => 'dzi', 'Duzib235G1128' => 'dzi', 'Duzib248G1060' => 'dzi', 'ECA232G1910' => 'eca', 'ECA233G4621' => 'eca', 'ECA238G1216' => 'eca', 'ECA238G1784' => 'eca', 'ECA248G1242' => 'eca', 'EL10Ac8g20071' => 'bvu', 'EL10Ac9g21086' => 'bvu', 'EL10Ac9g22407' => 'bvu', 'EL10Ac9g22412' => 'bvu', 'Eucgr.A01119' => 'egr', 'Eucgr.E04043' => 'egr', 'Eucgr.J00428' => 'egr', 'Eucgr.J00958' => 'egr', 'FAN11G3091' => 'fan', 'FAN11G3651' => 'fan', 'FAN16G2566' => 'fan', 'FAN21G3155' => 'fan', 'FAN21G3400' => 'fan', 'FAN21G3543' => 'fan', 'FAN25G0234' => 'fan', 'FAN25G1422' => 'fan', 'FAN25G3392' => 'fan', 'FvH4_3g01940' => 'fve', 'FvH4_3g29870' => 'fve', 'FvH4_3g33680' => 'fve', 'Glyma.09G004200' => 'gma', 'Glyma.11G151288' => 'gma', 'Glyma.11G189100' => 'gma', 'Glyma.12G072500' => 'gma', 'Glyma.12G085500' => 'gma', 'Glyma.12G181800' => 'gma', 'Glyma.12G193000' => 'gma', 'Glyma.13G309300' => 'gma', 'Glyma.13G319000' => 'gma', 'Glyma.17G012600' => 'gma', 'Gohir.A06G148600' => 'ghi', 'Gohir.A07G115800' => 'ghi', 'Gohir.A08G003600' => 'ghi', 'Gohir.A09G093300' => 'ghi', 'Gohir.A09G105400' => 'ghi', 'Gohir.A09G105500' => 'ghi', 'Gohir.D06G154600' => 'ghi', 'Gohir.D07G120200' => 'ghi', 'Gohir.D08G013900' => 'ghi', 'Gohir.D09G093100' => 'ghi', 'Gohir.D09G102200' => 'ghi', 'Gohir.D09G102300' => 'ghi', 'Gorai.001G129400' => 'gra', 'Gorai.004G008200' => 'gra', 'Gorai.006G109800' => 'gra', 'Gorai.006G119500' => 'gra', 'Gorai.006G121300' => 'gra', 'Gorai.010G180700' => 'gra', 'GSVIVG01012716001' => 'vvi', 'GSVIVG01025118001' => 'vvi', 'GSVIVG01030439001' => 'vvi', 'GSVIVG01031397001' => 'vvi', 'HanXRQChr01g0004201' => 'han', 'HanXRQChr02g0054941' => 'han', 'HanXRQChr05g0141811' => 'han', 'HanXRQChr07g0197751' => 'han', 'HanXRQChr11g0346691' => 'han', 'HanXRQChr13g0396971' => 'han', 'HanXRQChr14g0432951' => 'han', 'HanXRQChr14g0452001' => 'han', 'HanXRQChr15g0496681' => 'han', 'HanXRQChr17g0557491' => 'han', 'HanXRQChr17g0557501' => 'han', 'Haze_06809' => 'cav', 'Haze_12852' => 'cav', 'Haze_15850' => 'cav', 'Haze_23446' => 'cav', 'Haze_23942' => 'cav', 'Haze_23943' => 'cav', 'Hma1.2p1_0091F.1_g046450' => 'hma', 'Hma1.2p1_0128F.1_g059910' => 'hma', 'Hma1.2p1_0249F.1_g102260' => 'hma', 'Hma1.2p1_0453F.1_g156190' => 'hma', 'Hma1.2p1_0695F.1_g204380' => 'hma', 'Hma1.2p1_0749F.1_g212650' => 'hma', 'Hma1.2p1_2156F.1_g315420' => 'hma', 'Hma1.2p1_2686F.1_g326940' => 'hma', 'HPP92_006428' => 'vpl', 'HPP92_012069' => 'vpl', 'HPP92_014129' => 'vpl', 'HPP92_014133' => 'vpl', 'HPP92_017315' => 'vpl', 'HPP92_026445' => 'vpl', 'HPP92_026446' => 'vpl', 'Hund00774' => 'sun', 'Hund07682' => 'sun', 'Hund21413' => 'sun', 'Hund23462' => 'sun', 'Hund23463' => 'sun', 'Lalb_Chr03g0027911' => 'lal', 'Lalb_Chr13g0304271' => 'lal', 'Lalb_Chr19g0137471' => 'lal', 'Lalb_Chr22g0350651' => 'lal', 'Lalb_Chr24g0395151' => 'lal', 'Lj1A1231T40' => 'lonja', 'Lj1A221T48' => 'lonja', 'Lj1C924T12' => 'lonja', 'Lj2C993G6' => 'lonja', 'Lj3g0005790' => 'lja', 'Lj3g0015432' => 'lja', 'Lj3g0017722' => 'lja', 'Lj3g0018497' => 'lja', 'Lj4g0025071' => 'lja', 'Lsat_1_v5_gn_1_129680' => 'lsa', 'Lsat_1_v5_gn_2_25321' => 'lsa', 'Lsat_1_v5_gn_2_95461' => 'lsa', 'Lsat_1_v5_gn_4_159620' => 'lsa', 'Lsat_1_v5_gn_6_41301' => 'lsa', 'Lsat_1_v5_gn_6_74660' => 'lsa', 'Lsat_1_v5_gn_7_11520' => 'lsa', 'Lsat_1_v5_gn_9_67680' => 'lsa', 'Manes.04G008300' => 'mes', 'Manes.04G008400' => 'mes', 'Manes.04G026500' => 'mes', 'Manes.10G135300' => 'mes', 'Manes.11G157300' => 'mes', 'Manes.12G074000' => 'mes', 'Manes.16G006200' => 'mes', 'Manes.17G026400' => 'mes', 'Mapoly0024s0086' => 'mpo', 'Mapoly0024s0087' => 'mpo', 'Mapoly0071s0057' => 'mpo', 'Mapoly0204s0012' => 'mpo', 'MBI04_g37681_MAGBIO' => 'mbi', 'MBI05_g17779_MAGBIO' => 'mbi', 'MBI12_g31184_MAGBIO' => 'mbi', 'MBI17_g11083_MAGBIO' => 'mbi', 'MBI18_g03883_MAGBIO' => 'mbi', 'MBI18_g28940_MAGBIO' => 'mbi', 'MCO01G690' => 'mco', 'MD03G1109900' => 'mdo', 'MD03G1134800' => 'mdo', 'MD05G1348000' => 'mdo', 'MD10G1322400' => 'mdo', 'MD11G1123300' => 'mdo', 'MD11G1157600' => 'mdo', 'Medtr2g084875' => 'mtr', 'Medtr2g088130' => 'mtr', 'Medtr4g055310' => 'mtr', 'Medtr4g061070' => 'mtr', 'Medtr4g132250' => 'mtr', 'MELO3C004795.2' => 'cme', 'MELO3C004797.2' => 'cme', 'MELO3C007396.2' => 'cme', 'MELO3C019277.2' => 'cme', 'MELO3C021449.2' => 'cme', 'MELO3C025736.2' => 'cme', 'Migut.D02175' => 'egut', 'Migut.H01573' => 'egut', 'Migut.M01327' => 'egut', 'Migut.N02513' => 'egut', 'MSTRG.14638' => 'ama', 'MSTRG.18632' => 'ama', 'MSTRG.7203' => 'ama', 'Nitab4.5_0000533g0140' => 'nta', 'Nitab4.5_0000888g0150' => 'nta', 'Nitab4.5_0001453g0040' => 'nta', 'Nitab4.5_0002827g0090' => 'nta', 'Nitab4.5_0003082g0040' => 'nta', 'Nitab4.5_0007799g0040' => 'nta', 'Nitab4.5_0008983g0010' => 'nta', 'Nitab4.5_0009017g0020' => 'nta', 'Nn1g02132' => 'nnu', 'Nn1g03492' => 'nnu', 'Nn1g03493' => 'nnu', 'Nn1g03494' => 'nnu', 'Nn1g07164' => 'nnu', 'Nn1g07291' => 'nnu', 'Nn2g10655' => 'nnu', 'Nn2g11652' => 'nnu', 'Nn2g14008' => 'nnu', 'Nn3g17476' => 'nnu', 'Nn3g17477' => 'nnu', 'Nn4g22370' => 'nnu', 'Nn4g25255' => 'nnu', 'Nn5g27755' => 'nnu', 'Nn6g34260' => 'nnu', 'Nn6g35041' => 'nnu', 'Oeu005924.1' => 'oeu', 'Oeu008383.1' => 'oeu', 'Oeu014928.1' => 'oeu', 'Oeu019889.1' => 'oeu', 'Oeu022271.1' => 'oeu', 'Oeu025271.1' => 'oeu', 'Oeu036302.1' => 'oeu', 'Oeu044100.1' => 'oeu', 'Os01g0528300' => 'osa', 'Os03g0286200' => 'osa', 'Os04g0406600' => 'osa', 'Os07g0512000' => 'osa', 'Os07g0694600' => 'osa', 'Os08g0411000' => 'osa', 'Os09g0565700' => 'osa', 'Os09g0566050' => 'osa', 'Os10g0523700' => 'osa', 'Peaxi162Scf00002g00514' => 'pax', 'Peaxi162Scf00047g01817' => 'pax', 'Peaxi162Scf00114g00001' => 'pax', 'Peaxi162Scf00147g00613' => 'pax', 'Peaxi162Scf00389g00425' => 'pax', 'PGR042G1139' => 'pgr', 'PGR042G3273' => 'pgr', 'PGR102G2180' => 'pgr', 'PGR119G0234' => 'pgr', 'PGR119G0668' => 'pgr', 'PGSC0003DMG400007122' => 'stu', 'PGSC0003DMG400016478' => 'stu', 'PGSC0003DMG400025374' => 'stu', 'PGSC0003DMG400026536' => 'stu', 'Phvul.003G079600' => 'pvu', 'Phvul.005G115600' => 'pvu', 'Phvul.005G127100' => 'pvu', 'Phvul.006G149500' => 'pvu', 'Phvul.006G149600' => 'pvu', 'Phvul.011G071800' => 'pvu', 'Phvul.011G090400' => 'pvu', 'Potri.004G013400' => 'ptr', 'Potri.004G188100' => 'ptr', 'Potri.008G195500' => 'ptr', 'Potri.009G148800' => 'ptr', 'Potri.011G004700' => 'ptr', 'Pp3c17_22810' => 'ppa', 'Pp3c18_4480' => 'ppa', 'Pp3c19_13030' => 'ppa', 'Pp3c1_33620' => 'ppa', 'Pp3c2_9380' => 'ppa', 'PRCOL_00001023' => 'pco', 'Prupe.3G216300' => 'ppe', 'Prupe.4G019500' => 'ppe', 'Prupe.6G092500' => 'ppe', 'Prupe.6G119200' => 'ppe', 'Psat0s1945g0080' => 'psa', 'Psat0s4167g0040' => 'psa', 'Psat1g185800' => 'psa', 'Psat4g006440' => 'psa', 'Psat4g006480' => 'psa', 'Psat4g168120' => 'psa', 'Psat5g255680' => 'psa', 'Psat5g261760' => 'psa', 'Psat7g222120' => 'psa', 'PSO063G7252' => 'pso', 'PSO170G4778' => 'pso', 'PSO210G2249' => 'pso', 'PSO339G2411' => 'pso', 'PSO339G2457' => 'pso', 'PSO339G2854' => 'pso', 'PSO339G4288' => 'pso', 'PSO339G4615' => 'pso', 'PSO384G2796' => 'pso', 'PSO384G2940' => 'pso', 'PSO384G4227' => 'pso', 'PSO478G1425' => 'pso', 'PSO541G3863' => 'pso', 'PSO675G0507' => 'pso', 'PSO782G0338' => 'pso', 'PSO832G0644' => 'pso', 'QL01p013664' => 'qlo', 'QL01p036598' => 'qlo', 'QL05p072984' => 'qlo', 'QL08p005768' => 'qlo', 'QL08p032743' => 'qlo', 'QL93p0073_0439' => 'qlo', 'QL93p0073_0444' => 'qlo', 'RcHm_v2.0_Chr5g0002851' => 'rch', 'RcHm_v2.0_Chr5g0055201' => 'rch', 'RcHm_v2.0_Chr5g0061191' => 'rch', 'RcHm_v2.0_Chr7g0203231' => 'rch', 'Rhsim01G0208100' => 'rsi', 'Rhsim01G0208200' => 'rsi', 'Rhsim02G0106500' => 'rsi', 'Rhsim03G0107900' => 'rsi', 'Rhsim06G0163400' => 'rsi', 'Rhsim13G0105200' => 'rsi', 'Sabra04G0006300' => 'sbr', 'Sabra04G0127000' => 'sbr', 'Sabra08G0148700' => 'sbr', 'Sabra09G0117400' => 'sbr', 'SalBow1G3326' => 'sbo', 'SalBow3G3228' => 'sbo', 'SalBow6G1634' => 'sbo', 'SalBow6G3603' => 'sbo', 'SalBow6G5266' => 'sbo', 'SalBow7G2265' => 'sbo', 'SalBow8G0850' => 'sbo', 'SalBow8G2592' => 'sbo', 'Sc05g0009240' => 'sci', 'Sc12g0002300' => 'sci', 'Sc21g0000100' => 'sci', 'Sc21g0004720' => 'sci', 'Sed0002949' => 'sed', 'Sed0004114' => 'sed', 'Sed0004306' => 'sed', 'Sed0006172' => 'sed', 'Sed0008413' => 'sed', 'Sed0013809' => 'sed', 'Sed0019556' => 'sed', 'SEGI_03570' => 'sgi', 'SEGI_07859' => 'sgi', 'SEGI_15042' => 'sgi', 'SEGI_16263' => 'sgi', 'SEGI_16552' => 'sgi', 'SEGI_24331' => 'sgi', 'SEGI_27316' => 'sgi', 'SEGI_29521' => 'sgi', 'SEGI_41342' => 'sgi', 'SGA_v2.0_scaffold27G11617' => 'sas', 'SGA_v2.0_scaffold316G48428' => 'sas', 'SGA_v2.0_scaffold49G18261' => 'sas', 'SGA_v2.0_scaffold7G03831' => 'sas', 'SGA_v2.0_scaffold93G28359' => 'sas', 'SHI02210' => 'shi', 'SHI06028' => 'shi', 'SHI06321' => 'shi', 'SMO111G0012' => 'smo', 'SMO228G0080' => 'smo', 'SMO356G0756' => 'smo', 'Solyc02g080620.3' => 'sly', 'Solyc06g074530.1' => 'sly', 'Solyc11g066890.1' => 'sly', 'Solyc11g072520.3' => 'sly', 'Sopen02g025330' => 'spe', 'Sopen06g031000' => 'spe', 'Sopen09g008240' => 'spe', 'Sopen09g025210' => 'spe', 'Sopen11g026600' => 'spe', 'Sopen11g030170' => 'spe', 'Sp1g10420' => 'spa', 'Sp3g06570' => 'spa', 'Sp4g10660' => 'spa', 'Sp5g16460' => 'spa', 'Sp6g22710' => 'spa', 'TAR365G0112' => 'tar', 'TAR369G0717' => 'tar', 'TAR374G0976' => 'tar', 'TAR623G1128' => 'tar', 'TAR626G1937' => 'tar', 'TAR627G0123' => 'tar', 'TAR628G0305' => 'tar', 'TAR636G1176' => 'tar', 'TAR636G2442' => 'tar', 'THA.LOC104800556' => 'tha', 'THA.LOC104809501' => 'tha', 'THA.LOC104815126' => 'tha', 'THA.LOC104815732' => 'tha', 'THA.LOC104823528' => 'tha', 'Thecc.02G365600' => 'tca', 'Thecc.06G222300' => 'tca', 'Thecc.09G261800' => 'tca', 'Thecc.09G291400' => 'tca', 'Thhalv10003028m.g' => 'esa', 'Thhalv10007886m.g' => 'esa', 'Thhalv10016085m.g' => 'esa', 'Thhalv10016681m.g' => 'esa', 'Thhalv10020951m.g' => 'esa', 'TPR.G15598' => 'tpr', 'TPR.G29305' => 'tpr', 'TPR.G32395' => 'tpr', 'TPR.G36998' => 'tpr', 'TPR.G4227' => 'tpr', 'TWI18G1433' => 'twi', 'TWI31G0755' => 'twi', 'TWI38G0912' => 'twi', 'TWI75G1097' => 'twi', 'TWI75G1619' => 'twi', 'TWI79G1336' => 'twi', 'unitig_0.g943' => 'ugi', 'unitig_0.g944' => 'ugi', 'unitig_22.g6646' => 'ugi', 'unitig_37.g12681' => 'ugi', 'unitig_8.g3290' => 'ugi', 'vmacro03278' => 'vma', 'vmacro12197' => 'vma', 'vmacro14478' => 'vma', 'vmacro15787' => 'vma', 'vmacro15789' => 'vma', 'vmacro15790' => 'vma', 'vmacro15806' => 'vma', 'vmacro22907' => 'vma', 'vmacro22908' => 'vma', 'vmacro22909' => 'vma', 'vmacro23108' => 'vma', 'VMungo0540G0540' => 'vmu', 'VMungo0540G2468' => 'vmu', 'VMungo1080G0390' => 'vmu', 'VMungo1080G1165' => 'vmu', 'VMungo1127G0170' => 'vmu', 'VMungo1127G2099' => 'vmu', 'VMungo1215G3013' => 'vmu', 'Zm00001eb013110' => 'zma', 'Zm00001eb084260' => 'zma', 'Zm00001eb096110' => 'zma', 'Zm00001eb217510' => 'zma', 'Zm00001eb322550' => 'zma', 'Zm00001eb390770' => 'zma', 'Zm00001eb397170' => 'zma', 'Zm00001eb404610' => 'zma', 'Zm00001eb421790' => 'zma' ) $gf_id = 'HOM05D000911' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000911' ) $data_identifier = 'HOM05D000911' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 16, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 5, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 6, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 8, 'nnu' => (int) 16, 'oeu' => (int) 8, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 5, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 16, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421790' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000911', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27780' => 'bna', 'A03p35380' => 'bna', 'A04p21160' => 'bna', 'A05p40570' => 'bna', 'A06p26900' => 'bna', 'A08p33230' => 'bna', 'A09p65960' => 'bna', 'A10p18290' => 'bna', 'Aa31LG1G12990' => 'aar', 'Aa31LG1G2980' => 'aar', 'Aa31LG4G14320' => 'aar', 'Aa31LG7G11800' => 'aar', 'Aa31sc36G50' => 'aar', 'Aa31sc36G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3721' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5459' => 'aag', 'Actinidia03028' => 'ach', 'Actinidia03753' => 'ach', 'Actinidia04187' => 'ach', 'Actinidia05509' => 'ach', 'Actinidia24180' => 'ach', 'Actinidia26906' => 'ach', 'Actinidia37097' => 'ach', 'Actinidia38249' => 'ach', 'Ah.01g003470' => 'amhyb', 'Ah.01g004580' => 'amhyb', 'Ah.01g014850' => 'amhyb', 'Ah.01g016830' => 'amhyb', 'Ah.14g088000' => 'amhyb', 'AL1G22980' => 'aly', 'AL3G18990' => 'aly', 'AL4G22440' => 'aly', 'AL4G33180' => 'aly', 'AL5G22920' => 'aly', 'AL6G33660' => 'aly', 'AL8G20720' => 'aly', 'Aqoxy1G00935' => 'aox', 'Aqoxy1G02094' => 'aox', 'Aqoxy2G01239' => 'aox', 'Aqoxy4G01870' => 'aox', 'Aqoxy7G00450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.36ZVTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71EM27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5D6C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH3WRE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3NCM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RIM768' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YB5YRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z36GDV' => 'arhy', 'AT1G08250' => 'ath', 'AT1G11790' => 'ath', 'AT2G27820' => 'ath', 'AT3G07630' => 'ath', 'AT3G44720' => 'ath', 'AT5G22630' => 'ath', 'ATR0693G304' => 'atr', 'ATR0794G109' => 'atr', 'ATR0820G120' => 'atr', 'ATR1159G064' => 'atr', 'Atru.chr10.2239' => 'acertr', 'Atru.chr3.3371' => 'acertr', 'Atru.chr6.3202' => 'acertr', 'AUR62006499' => 'cqu', 'AUR62012718' => 'cqu', 'AUR62021938' => 'cqu', 'AUR62023932' => 'cqu', 'AUR62025034' => 'cqu', 'AUR62025035' => 'cqu', 'AUR62038307' => 'cqu', 'AUR62043466' => 'cqu', 'BcaB02g10748' => 'bca', 'BcaB03g13231' => 'bca', 'BcaB03g14689' => 'bca', 'BcaB05g22716' => 'bca', 'BcaB06g28172' => 'bca', 'BcaB08g36413' => 'bca', 'BcaC01g02186' => 'bca', 'BcaC01g04272' => 'bca', 'BcaC02g08080' => 'bca', 'BcaC02g08227' => 'bca', 'BcaC03g13901' => 'bca', 'BcaC04g19593' => 'bca', 'BcaC04g20874' => 'bca', 'BcaC05g29557' => 'bca', 'BcaC06g35505' => 'bca', 'BcaC07g41954' => 'bca', 'BcaC07g41955' => 'bca', 'BcaC07g41956' => 'bca', 'BcaC07g42519' => 'bca', 'BcaC07g42520' => 'bca', 'BcaC07g42523' => 'bca', 'BcaC07g42524' => 'bca', 'BcaC07g42525' => 'bca', 'BcaC08g47480' => 'bca', 'BcaC08g47481' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00530' => 'bna', 'BolC2t07178H' => 'bol', 'BolC3t16567H' => 'bol', 'BolC4t27234H' => 'bol', 'BolC5t29728H' => 'bol', 'BolC5t34622H' => 'bol', 'BolC6t40321H' => 'bol', 'BolC7t42028H' => 'bol', 'BolC8t49125H' => 'bol', 'BolC8t52538H' => 'bol', 'BolC8t52539H' => 'bol', 'BolC9t56681H' => 'bol', 'BolC9t58266H' => 'bol', 'BolSC21t60294H' => 'bol', 'BraA02t05670Z' => 'bra', 'BraA03t12716Z' => 'bra', 'BraA04t17685Z' => 'bra', 'BraA05t22788Z' => 'bra', 'BraA06t24032Z' => 'bra', 'BraA06t25625Z' => 'bra', 'BraA07t27930Z' => 'bra', 'BraA08t35242Z' => 'bra', 'BraA09t38609Z' => 'bra', 'BraA10t43905Z' => 'bra', 'C02p11060' => 'bna', 'C03p42990' => 'bna', 'C03p67310' => 'bna', 'C04p56990' => 'bna', 'C04p58660' => 'bna', 'C05p09890' => 'bna', 'C05p59680' => 'bna', 'C06p19830' => 'bna', 'C06p53040' => 'bna', 'C07p15230' => 'bna', 'C08p50070' => 'bna', 'C08p50090' => 'bna', 'C09p38330' => 'bna', 'C09p53940' => 'bna', 'CAN.G1014.1' => 'can', 'CAN.G644.30' => 'can', 'CAN.G84.47' => 'can', 'CAN.G919.8' => 'can', 'CANSAT54G0113' => 'cansat', 'CANSAT54G1286' => 'cansat', 'CANSAT64G1020' => 'cansat', 'CARHR008080' => 'chi', 'CARHR008090' => 'chi', 'CARHR012130' => 'chi', 'CARHR038390' => 'chi', 'CARHR082330' => 'chi', 'CARHR120520' => 'chi', 'CARHR151470' => 'chi', 'CARHR190950' => 'chi', 'Carub.0001s0760' => 'cru', 'Carub.0001s1146' => 'cru', 'Carub.0003s0721' => 'cru', 'Carub.0004s0858' => 'cru', 'Carub.0005s1040' => 'cru', 'Carub.0006s2035' => 'cru', 'Carub.0015s0005' => 'cru', 'Ca_01607_v3' => 'car', 'Ca_01677_v3' => 'car', 'Ca_06087_v3' => 'car', 'Ca_19238_v3' => 'car', 'Ca_19373_v3' => 'car', 'Ca_21079_v3' => 'car', 'CBR_g54016' => 'cbr', 'CBR_g54018' => 'cbr', 'CBR_g54020' => 'cbr', 'Cc01_g09780' => 'ccan', 'Cc01_g11680' => 'ccan', 'Cc02_g15610' => 'ccan', 'Cc05_g04350' => 'ccan', 'Cc09_g01580' => 'ccan', 'CDE01G0795' => 'cde', 'CDE02G2024' => 'cde', 'CDE02G2260' => 'cde', 'CDE02G4561' => 'cde', 'CDE05G2733' => 'cde', 'CDE05G3422' => 'cde', 'CDE06G2003' => 'cde', 'CDE08G0576' => 'cde', 'CDE09G0048' => 'cde', 'CDE11G0805' => 'cde', 'Cfa003644' => 'cfa', 'Cfa006290' => 'cfa', 'Cfa010080' => 'cfa', 'Cfa011376' => 'cfa', 'Cfa011576' => 'cfa', 'Cfa011577' => 'cfa', 'Cfa014389' => 'cfa', 'Ciclev10006044m.g' => 'ccl', 'Ciclev10006954m.g' => 'ccl', 'Ciclev10015131m.g' => 'ccl', 'Ciclev10015580m.g' => 'ccl', 'Ciclev10028359m.g' => 'ccl', 'Ciclev10028573m.g' => 'ccl', 'CiPaw.03G159300' => 'cil', 'CiPaw.04G115100' => 'cil', 'CiPaw.09G092800' => 'cil', 'CiPaw.10G071800' => 'cil', 'CiPaw.13G105800' => 'cil', 'CiPaw.13G141000' => 'cil', 'CiPaw.14G103400' => 'cil', 'ClCG01G012700' => 'cla', 'ClCG01G012720' => 'cla', 'ClCG01G021920' => 'cla', 'ClCG02G008870' => 'cla', 'ClCG02G020840' => 'cla', 'ClCG02G021930' => 'cla', 'COL.COLO4_19302' => 'col', 'COL.COLO4_25262' => 'col', 'COL.COLO4_31788' => 'col', 'Cpa.g.c34684' => 'cpa', 'Cpa.g.c36520.1' => 'cpa', 'Cpa.g.c45626' => 'cpa', 'Cpa.g.sc121.17' => 'cpa', 'Cpa.g.sc13.22' => 'cpa', 'Cpa.g.sc87.88' => 'cpa', 'Cre06.g261800' => 'cre', 'CsaV3_1G014500' => 'csa', 'CsaV3_1G014510' => 'csa', 'CsaV3_2G034880' => 'csa', 'CsaV3_6G014760' => 'csa', 'CsaV3_6G021500' => 'csa', 'CsaV3_6G048980' => 'csa', 'CSS0002511' => 'camsi', 'CSS0007556' => 'camsi', 'CSS0008532' => 'camsi', 'CSS0009709' => 'camsi', 'CSS0010486' => 'camsi', 'CSS0016768' => 'camsi', 'CSS0023512' => 'camsi', 'CSS0025341' => 'camsi', 'CSS0027999' => 'camsi', 'CSS0028944' => 'camsi', 'CSS0032292' => 'camsi', 'CSS0032464' => 'camsi', 'CSS0037153' => 'camsi', 'CSS0039256' => 'camsi', 'CSS0048392' => 'camsi', 'CSS0050458' => 'camsi', 'DCAR_004224' => 'dca', 'DCAR_006147' => 'dca', 'DCAR_006465' => 'dca', 'DCAR_008159' => 'dca', 'DCAR_012164' => 'dca', 'DCAR_019764' => 'dca', 'Dinv05418' => 'din', 'Dinv10839' => 'din', 'Dinv12521' => 'din', 'Dinv13900' => 'din', 'Dinv29426' => 'din', 'Duzib150G0263' => 'dzi', 'Duzib168G1178' => 'dzi', 'Duzib168G1924' => 'dzi', 'Duzib170G0299' => 'dzi', 'Duzib170G0813' => 'dzi', 'Duzib235G1128' => 'dzi', 'Duzib248G1060' => 'dzi', 'ECA232G1910' => 'eca', 'ECA233G4621' => 'eca', 'ECA238G1216' => 'eca', 'ECA238G1784' => 'eca', 'ECA248G1242' => 'eca', 'EL10Ac8g20071' => 'bvu', 'EL10Ac9g21086' => 'bvu', 'EL10Ac9g22407' => 'bvu', 'EL10Ac9g22412' => 'bvu', 'Eucgr.A01119' => 'egr', 'Eucgr.E04043' => 'egr', 'Eucgr.J00428' => 'egr', 'Eucgr.J00958' => 'egr', 'FAN11G3091' => 'fan', 'FAN11G3651' => 'fan', 'FAN16G2566' => 'fan', 'FAN21G3155' => 'fan', 'FAN21G3400' => 'fan', 'FAN21G3543' => 'fan', 'FAN25G0234' => 'fan', 'FAN25G1422' => 'fan', 'FAN25G3392' => 'fan', 'FvH4_3g01940' => 'fve', 'FvH4_3g29870' => 'fve', 'FvH4_3g33680' => 'fve', 'Glyma.09G004200' => 'gma', 'Glyma.11G151288' => 'gma', 'Glyma.11G189100' => 'gma', 'Glyma.12G072500' => 'gma', 'Glyma.12G085500' => 'gma', 'Glyma.12G181800' => 'gma', 'Glyma.12G193000' => 'gma', 'Glyma.13G309300' => 'gma', 'Glyma.13G319000' => 'gma', 'Glyma.17G012600' => 'gma', 'Gohir.A06G148600' => 'ghi', 'Gohir.A07G115800' => 'ghi', 'Gohir.A08G003600' => 'ghi', 'Gohir.A09G093300' => 'ghi', 'Gohir.A09G105400' => 'ghi', 'Gohir.A09G105500' => 'ghi', 'Gohir.D06G154600' => 'ghi', 'Gohir.D07G120200' => 'ghi', 'Gohir.D08G013900' => 'ghi', 'Gohir.D09G093100' => 'ghi', 'Gohir.D09G102200' => 'ghi', 'Gohir.D09G102300' => 'ghi', 'Gorai.001G129400' => 'gra', 'Gorai.004G008200' => 'gra', 'Gorai.006G109800' => 'gra', 'Gorai.006G119500' => 'gra', 'Gorai.006G121300' => 'gra', 'Gorai.010G180700' => 'gra', 'GSVIVG01012716001' => 'vvi', 'GSVIVG01025118001' => 'vvi', 'GSVIVG01030439001' => 'vvi', 'GSVIVG01031397001' => 'vvi', 'HanXRQChr01g0004201' => 'han', 'HanXRQChr02g0054941' => 'han', 'HanXRQChr05g0141811' => 'han', 'HanXRQChr07g0197751' => 'han', 'HanXRQChr11g0346691' => 'han', 'HanXRQChr13g0396971' => 'han', 'HanXRQChr14g0432951' => 'han', 'HanXRQChr14g0452001' => 'han', 'HanXRQChr15g0496681' => 'han', 'HanXRQChr17g0557491' => 'han', 'HanXRQChr17g0557501' => 'han', 'Haze_06809' => 'cav', 'Haze_12852' => 'cav', 'Haze_15850' => 'cav', 'Haze_23446' => 'cav', 'Haze_23942' => 'cav', 'Haze_23943' => 'cav', 'Hma1.2p1_0091F.1_g046450' => 'hma', 'Hma1.2p1_0128F.1_g059910' => 'hma', 'Hma1.2p1_0249F.1_g102260' => 'hma', 'Hma1.2p1_0453F.1_g156190' => 'hma', 'Hma1.2p1_0695F.1_g204380' => 'hma', 'Hma1.2p1_0749F.1_g212650' => 'hma', 'Hma1.2p1_2156F.1_g315420' => 'hma', 'Hma1.2p1_2686F.1_g326940' => 'hma', 'HPP92_006428' => 'vpl', 'HPP92_012069' => 'vpl', 'HPP92_014129' => 'vpl', 'HPP92_014133' => 'vpl', 'HPP92_017315' => 'vpl', 'HPP92_026445' => 'vpl', 'HPP92_026446' => 'vpl', 'Hund00774' => 'sun', 'Hund07682' => 'sun', 'Hund21413' => 'sun', 'Hund23462' => 'sun', 'Hund23463' => 'sun', 'Lalb_Chr03g0027911' => 'lal', 'Lalb_Chr13g0304271' => 'lal', 'Lalb_Chr19g0137471' => 'lal', 'Lalb_Chr22g0350651' => 'lal', 'Lalb_Chr24g0395151' => 'lal', 'Lj1A1231T40' => 'lonja', 'Lj1A221T48' => 'lonja', 'Lj1C924T12' => 'lonja', 'Lj2C993G6' => 'lonja', 'Lj3g0005790' => 'lja', 'Lj3g0015432' => 'lja', 'Lj3g0017722' => 'lja', 'Lj3g0018497' => 'lja', 'Lj4g0025071' => 'lja', 'Lsat_1_v5_gn_1_129680' => 'lsa', 'Lsat_1_v5_gn_2_25321' => 'lsa', 'Lsat_1_v5_gn_2_95461' => 'lsa', 'Lsat_1_v5_gn_4_159620' => 'lsa', 'Lsat_1_v5_gn_6_41301' => 'lsa', 'Lsat_1_v5_gn_6_74660' => 'lsa', 'Lsat_1_v5_gn_7_11520' => 'lsa', 'Lsat_1_v5_gn_9_67680' => 'lsa', 'Manes.04G008300' => 'mes', 'Manes.04G008400' => 'mes', 'Manes.04G026500' => 'mes', 'Manes.10G135300' => 'mes', 'Manes.11G157300' => 'mes', 'Manes.12G074000' => 'mes', 'Manes.16G006200' => 'mes', 'Manes.17G026400' => 'mes', 'Mapoly0024s0086' => 'mpo', 'Mapoly0024s0087' => 'mpo', 'Mapoly0071s0057' => 'mpo', 'Mapoly0204s0012' => 'mpo', 'MBI04_g37681_MAGBIO' => 'mbi', 'MBI05_g17779_MAGBIO' => 'mbi', 'MBI12_g31184_MAGBIO' => 'mbi', 'MBI17_g11083_MAGBIO' => 'mbi', 'MBI18_g03883_MAGBIO' => 'mbi', 'MBI18_g28940_MAGBIO' => 'mbi', 'MCO01G690' => 'mco', 'MD03G1109900' => 'mdo', 'MD03G1134800' => 'mdo', 'MD05G1348000' => 'mdo', 'MD10G1322400' => 'mdo', 'MD11G1123300' => 'mdo', 'MD11G1157600' => 'mdo', 'Medtr2g084875' => 'mtr', 'Medtr2g088130' => 'mtr', 'Medtr4g055310' => 'mtr', 'Medtr4g061070' => 'mtr', 'Medtr4g132250' => 'mtr', 'MELO3C004795.2' => 'cme', 'MELO3C004797.2' => 'cme', 'MELO3C007396.2' => 'cme', 'MELO3C019277.2' => 'cme', 'MELO3C021449.2' => 'cme', 'MELO3C025736.2' => 'cme', 'Migut.D02175' => 'egut', 'Migut.H01573' => 'egut', 'Migut.M01327' => 'egut', 'Migut.N02513' => 'egut', 'MSTRG.14638' => 'ama', 'MSTRG.18632' => 'ama', 'MSTRG.7203' => 'ama', 'Nitab4.5_0000533g0140' => 'nta', 'Nitab4.5_0000888g0150' => 'nta', 'Nitab4.5_0001453g0040' => 'nta', 'Nitab4.5_0002827g0090' => 'nta', 'Nitab4.5_0003082g0040' => 'nta', 'Nitab4.5_0007799g0040' => 'nta', 'Nitab4.5_0008983g0010' => 'nta', 'Nitab4.5_0009017g0020' => 'nta', 'Nn1g02132' => 'nnu', 'Nn1g03492' => 'nnu', 'Nn1g03493' => 'nnu', 'Nn1g03494' => 'nnu', 'Nn1g07164' => 'nnu', 'Nn1g07291' => 'nnu', 'Nn2g10655' => 'nnu', 'Nn2g11652' => 'nnu', 'Nn2g14008' => 'nnu', 'Nn3g17476' => 'nnu', 'Nn3g17477' => 'nnu', 'Nn4g22370' => 'nnu', 'Nn4g25255' => 'nnu', 'Nn5g27755' => 'nnu', 'Nn6g34260' => 'nnu', 'Nn6g35041' => 'nnu', 'Oeu005924.1' => 'oeu', 'Oeu008383.1' => 'oeu', 'Oeu014928.1' => 'oeu', 'Oeu019889.1' => 'oeu', 'Oeu022271.1' => 'oeu', 'Oeu025271.1' => 'oeu', 'Oeu036302.1' => 'oeu', 'Oeu044100.1' => 'oeu', 'Os01g0528300' => 'osa', 'Os03g0286200' => 'osa', 'Os04g0406600' => 'osa', 'Os07g0512000' => 'osa', 'Os07g0694600' => 'osa', 'Os08g0411000' => 'osa', 'Os09g0565700' => 'osa', 'Os09g0566050' => 'osa', 'Os10g0523700' => 'osa', 'Peaxi162Scf00002g00514' => 'pax', 'Peaxi162Scf00047g01817' => 'pax', 'Peaxi162Scf00114g00001' => 'pax', 'Peaxi162Scf00147g00613' => 'pax', 'Peaxi162Scf00389g00425' => 'pax', 'PGR042G1139' => 'pgr', 'PGR042G3273' => 'pgr', 'PGR102G2180' => 'pgr', 'PGR119G0234' => 'pgr', 'PGR119G0668' => 'pgr', 'PGSC0003DMG400007122' => 'stu', 'PGSC0003DMG400016478' => 'stu', 'PGSC0003DMG400025374' => 'stu', 'PGSC0003DMG400026536' => 'stu', 'Phvul.003G079600' => 'pvu', 'Phvul.005G115600' => 'pvu', 'Phvul.005G127100' => 'pvu', 'Phvul.006G149500' => 'pvu', 'Phvul.006G149600' => 'pvu', 'Phvul.011G071800' => 'pvu', 'Phvul.011G090400' => 'pvu', 'Potri.004G013400' => 'ptr', 'Potri.004G188100' => 'ptr', 'Potri.008G195500' => 'ptr', 'Potri.009G148800' => 'ptr', 'Potri.011G004700' => 'ptr', 'Pp3c17_22810' => 'ppa', 'Pp3c18_4480' => 'ppa', 'Pp3c19_13030' => 'ppa', 'Pp3c1_33620' => 'ppa', 'Pp3c2_9380' => 'ppa', 'PRCOL_00001023' => 'pco', 'Prupe.3G216300' => 'ppe', 'Prupe.4G019500' => 'ppe', 'Prupe.6G092500' => 'ppe', 'Prupe.6G119200' => 'ppe', 'Psat0s1945g0080' => 'psa', 'Psat0s4167g0040' => 'psa', 'Psat1g185800' => 'psa', 'Psat4g006440' => 'psa', 'Psat4g006480' => 'psa', 'Psat4g168120' => 'psa', 'Psat5g255680' => 'psa', 'Psat5g261760' => 'psa', 'Psat7g222120' => 'psa', 'PSO063G7252' => 'pso', 'PSO170G4778' => 'pso', 'PSO210G2249' => 'pso', 'PSO339G2411' => 'pso', 'PSO339G2457' => 'pso', 'PSO339G2854' => 'pso', 'PSO339G4288' => 'pso', 'PSO339G4615' => 'pso', 'PSO384G2796' => 'pso', 'PSO384G2940' => 'pso', 'PSO384G4227' => 'pso', 'PSO478G1425' => 'pso', 'PSO541G3863' => 'pso', 'PSO675G0507' => 'pso', 'PSO782G0338' => 'pso', 'PSO832G0644' => 'pso', 'QL01p013664' => 'qlo', 'QL01p036598' => 'qlo', 'QL05p072984' => 'qlo', 'QL08p005768' => 'qlo', 'QL08p032743' => 'qlo', 'QL93p0073_0439' => 'qlo', 'QL93p0073_0444' => 'qlo', 'RcHm_v2.0_Chr5g0002851' => 'rch', 'RcHm_v2.0_Chr5g0055201' => 'rch', 'RcHm_v2.0_Chr5g0061191' => 'rch', 'RcHm_v2.0_Chr7g0203231' => 'rch', 'Rhsim01G0208100' => 'rsi', 'Rhsim01G0208200' => 'rsi', 'Rhsim02G0106500' => 'rsi', 'Rhsim03G0107900' => 'rsi', 'Rhsim06G0163400' => 'rsi', 'Rhsim13G0105200' => 'rsi', 'Sabra04G0006300' => 'sbr', 'Sabra04G0127000' => 'sbr', 'Sabra08G0148700' => 'sbr', 'Sabra09G0117400' => 'sbr', 'SalBow1G3326' => 'sbo', 'SalBow3G3228' => 'sbo', 'SalBow6G1634' => 'sbo', 'SalBow6G3603' => 'sbo', 'SalBow6G5266' => 'sbo', 'SalBow7G2265' => 'sbo', 'SalBow8G0850' => 'sbo', 'SalBow8G2592' => 'sbo', 'Sc05g0009240' => 'sci', 'Sc12g0002300' => 'sci', 'Sc21g0000100' => 'sci', 'Sc21g0004720' => 'sci', 'Sed0002949' => 'sed', 'Sed0004114' => 'sed', 'Sed0004306' => 'sed', 'Sed0006172' => 'sed', 'Sed0008413' => 'sed', 'Sed0013809' => 'sed', 'Sed0019556' => 'sed', 'SEGI_03570' => 'sgi', 'SEGI_07859' => 'sgi', 'SEGI_15042' => 'sgi', 'SEGI_16263' => 'sgi', 'SEGI_16552' => 'sgi', 'SEGI_24331' => 'sgi', 'SEGI_27316' => 'sgi', 'SEGI_29521' => 'sgi', 'SEGI_41342' => 'sgi', 'SGA_v2.0_scaffold27G11617' => 'sas', 'SGA_v2.0_scaffold316G48428' => 'sas', 'SGA_v2.0_scaffold49G18261' => 'sas', 'SGA_v2.0_scaffold7G03831' => 'sas', 'SGA_v2.0_scaffold93G28359' => 'sas', 'SHI02210' => 'shi', 'SHI06028' => 'shi', 'SHI06321' => 'shi', 'SMO111G0012' => 'smo', 'SMO228G0080' => 'smo', 'SMO356G0756' => 'smo', 'Solyc02g080620.3' => 'sly', 'Solyc06g074530.1' => 'sly', 'Solyc11g066890.1' => 'sly', 'Solyc11g072520.3' => 'sly', 'Sopen02g025330' => 'spe', 'Sopen06g031000' => 'spe', 'Sopen09g008240' => 'spe', 'Sopen09g025210' => 'spe', 'Sopen11g026600' => 'spe', 'Sopen11g030170' => 'spe', 'Sp1g10420' => 'spa', 'Sp3g06570' => 'spa', 'Sp4g10660' => 'spa', 'Sp5g16460' => 'spa', 'Sp6g22710' => 'spa', 'TAR365G0112' => 'tar', 'TAR369G0717' => 'tar', 'TAR374G0976' => 'tar', 'TAR623G1128' => 'tar', 'TAR626G1937' => 'tar', 'TAR627G0123' => 'tar', 'TAR628G0305' => 'tar', 'TAR636G1176' => 'tar', 'TAR636G2442' => 'tar', 'THA.LOC104800556' => 'tha', 'THA.LOC104809501' => 'tha', 'THA.LOC104815126' => 'tha', 'THA.LOC104815732' => 'tha', 'THA.LOC104823528' => 'tha', 'Thecc.02G365600' => 'tca', 'Thecc.06G222300' => 'tca', 'Thecc.09G261800' => 'tca', 'Thecc.09G291400' => 'tca', 'Thhalv10003028m.g' => 'esa', 'Thhalv10007886m.g' => 'esa', 'Thhalv10016085m.g' => 'esa', 'Thhalv10016681m.g' => 'esa', 'Thhalv10020951m.g' => 'esa', 'TPR.G15598' => 'tpr', 'TPR.G29305' => 'tpr', 'TPR.G32395' => 'tpr', 'TPR.G36998' => 'tpr', 'TPR.G4227' => 'tpr', 'TWI18G1433' => 'twi', 'TWI31G0755' => 'twi', 'TWI38G0912' => 'twi', 'TWI75G1097' => 'twi', 'TWI75G1619' => 'twi', 'TWI79G1336' => 'twi', 'unitig_0.g943' => 'ugi', 'unitig_0.g944' => 'ugi', 'unitig_22.g6646' => 'ugi', 'unitig_37.g12681' => 'ugi', 'unitig_8.g3290' => 'ugi', 'vmacro03278' => 'vma', 'vmacro12197' => 'vma', 'vmacro14478' => 'vma', 'vmacro15787' => 'vma', 'vmacro15789' => 'vma', 'vmacro15790' => 'vma', 'vmacro15806' => 'vma', 'vmacro22907' => 'vma', 'vmacro22908' => 'vma', 'vmacro22909' => 'vma', 'vmacro23108' => 'vma', 'VMungo0540G0540' => 'vmu', 'VMungo0540G2468' => 'vmu', 'VMungo1080G0390' => 'vmu', 'VMungo1080G1165' => 'vmu', 'VMungo1127G0170' => 'vmu', 'VMungo1127G2099' => 'vmu', 'VMungo1215G3013' => 'vmu', 'Zm00001eb013110' => 'zma', 'Zm00001eb084260' => 'zma', 'Zm00001eb096110' => 'zma', 'Zm00001eb217510' => 'zma', 'Zm00001eb322550' => 'zma', 'Zm00001eb390770' => 'zma', 'Zm00001eb397170' => 'zma', 'Zm00001eb404610' => 'zma', 'Zm00001eb421790' => 'zma' ), 'gf_id' => 'HOM05D000911', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000911' ), 'data_identifier' => 'HOM05D000911', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000911', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27780' => 'bna', 'A03p35380' => 'bna', 'A04p21160' => 'bna', 'A05p40570' => 'bna', 'A06p26900' => 'bna', 'A08p33230' => 'bna', 'A09p65960' => 'bna', 'A10p18290' => 'bna', 'Aa31LG1G12990' => 'aar', 'Aa31LG1G2980' => 'aar', 'Aa31LG4G14320' => 'aar', 'Aa31LG7G11800' => 'aar', 'Aa31sc36G50' => 'aar', 'Aa31sc36G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3721' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5459' => 'aag', 'Actinidia03028' => 'ach', 'Actinidia03753' => 'ach', 'Actinidia04187' => 'ach', 'Actinidia05509' => 'ach', 'Actinidia24180' => 'ach', 'Actinidia26906' => 'ach', 'Actinidia37097' => 'ach', 'Actinidia38249' => 'ach', 'Ah.01g003470' => 'amhyb', 'Ah.01g004580' => 'amhyb', 'Ah.01g014850' => 'amhyb', 'Ah.01g016830' => 'amhyb', 'Ah.14g088000' => 'amhyb', 'AL1G22980' => 'aly', 'AL3G18990' => 'aly', 'AL4G22440' => 'aly', 'AL4G33180' => 'aly', 'AL5G22920' => 'aly', 'AL6G33660' => 'aly', 'AL8G20720' => 'aly', 'Aqoxy1G00935' => 'aox', 'Aqoxy1G02094' => 'aox', 'Aqoxy2G01239' => 'aox', 'Aqoxy4G01870' => 'aox', 'Aqoxy7G00450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.36ZVTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71EM27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5D6C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH3WRE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3NCM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RIM768' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YB5YRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z36GDV' => 'arhy', 'AT1G08250' => 'ath', 'AT1G11790' => 'ath', 'AT2G27820' => 'ath', 'AT3G07630' => 'ath', 'AT3G44720' => 'ath', 'AT5G22630' => 'ath', 'ATR0693G304' => 'atr', 'ATR0794G109' => 'atr', 'ATR0820G120' => 'atr', 'ATR1159G064' => 'atr', 'Atru.chr10.2239' => 'acertr', 'Atru.chr3.3371' => 'acertr', 'Atru.chr6.3202' => 'acertr', 'AUR62006499' => 'cqu', 'AUR62012718' => 'cqu', 'AUR62021938' => 'cqu', 'AUR62023932' => 'cqu', 'AUR62025034' => 'cqu', 'AUR62025035' => 'cqu', 'AUR62038307' => 'cqu', 'AUR62043466' => 'cqu', 'BcaB02g10748' => 'bca', 'BcaB03g13231' => 'bca', 'BcaB03g14689' => 'bca', 'BcaB05g22716' => 'bca', 'BcaB06g28172' => 'bca', 'BcaB08g36413' => 'bca', 'BcaC01g02186' => 'bca', 'BcaC01g04272' => 'bca', 'BcaC02g08080' => 'bca', 'BcaC02g08227' => 'bca', 'BcaC03g13901' => 'bca', 'BcaC04g19593' => 'bca', 'BcaC04g20874' => 'bca', 'BcaC05g29557' => 'bca', 'BcaC06g35505' => 'bca', 'BcaC07g41954' => 'bca', 'BcaC07g41955' => 'bca', 'BcaC07g41956' => 'bca', 'BcaC07g42519' => 'bca', 'BcaC07g42520' => 'bca', 'BcaC07g42523' => 'bca', 'BcaC07g42524' => 'bca', 'BcaC07g42525' => 'bca', 'BcaC08g47480' => 'bca', 'BcaC08g47481' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00530' => 'bna', 'BolC2t07178H' => 'bol', 'BolC3t16567H' => 'bol', 'BolC4t27234H' => 'bol', 'BolC5t29728H' => 'bol', 'BolC5t34622H' => 'bol', 'BolC6t40321H' => 'bol', 'BolC7t42028H' => 'bol', 'BolC8t49125H' => 'bol', 'BolC8t52538H' => 'bol', 'BolC8t52539H' => 'bol', 'BolC9t56681H' => 'bol', 'BolC9t58266H' => 'bol', 'BolSC21t60294H' => 'bol', 'BraA02t05670Z' => 'bra', 'BraA03t12716Z' => 'bra', 'BraA04t17685Z' => 'bra', 'BraA05t22788Z' => 'bra', 'BraA06t24032Z' => 'bra', 'BraA06t25625Z' => 'bra', 'BraA07t27930Z' => 'bra', 'BraA08t35242Z' => 'bra', 'BraA09t38609Z' => 'bra', 'BraA10t43905Z' => 'bra', 'C02p11060' => 'bna', 'C03p42990' => 'bna', 'C03p67310' => 'bna', 'C04p56990' => 'bna', 'C04p58660' => 'bna', 'C05p09890' => 'bna', 'C05p59680' => 'bna', 'C06p19830' => 'bna', 'C06p53040' => 'bna', 'C07p15230' => 'bna', 'C08p50070' => 'bna', 'C08p50090' => 'bna', 'C09p38330' => 'bna', 'C09p53940' => 'bna', 'CAN.G1014.1' => 'can', 'CAN.G644.30' => 'can', 'CAN.G84.47' => 'can', 'CAN.G919.8' => 'can', 'CANSAT54G0113' => 'cansat', 'CANSAT54G1286' => 'cansat', 'CANSAT64G1020' => 'cansat', 'CARHR008080' => 'chi', 'CARHR008090' => 'chi', 'CARHR012130' => 'chi', 'CARHR038390' => 'chi', 'CARHR082330' => 'chi', 'CARHR120520' => 'chi', 'CARHR151470' => 'chi', 'CARHR190950' => 'chi', 'Carub.0001s0760' => 'cru', 'Carub.0001s1146' => 'cru', 'Carub.0003s0721' => 'cru', 'Carub.0004s0858' => 'cru', 'Carub.0005s1040' => 'cru', 'Carub.0006s2035' => 'cru', 'Carub.0015s0005' => 'cru', 'Ca_01607_v3' => 'car', 'Ca_01677_v3' => 'car', 'Ca_06087_v3' => 'car', 'Ca_19238_v3' => 'car', 'Ca_19373_v3' => 'car', 'Ca_21079_v3' => 'car', 'CBR_g54016' => 'cbr', 'CBR_g54018' => 'cbr', 'CBR_g54020' => 'cbr', 'Cc01_g09780' => 'ccan', 'Cc01_g11680' => 'ccan', 'Cc02_g15610' => 'ccan', 'Cc05_g04350' => 'ccan', 'Cc09_g01580' => 'ccan', 'CDE01G0795' => 'cde', 'CDE02G2024' => 'cde', 'CDE02G2260' => 'cde', 'CDE02G4561' => 'cde', 'CDE05G2733' => 'cde', 'CDE05G3422' => 'cde', 'CDE06G2003' => 'cde', 'CDE08G0576' => 'cde', 'CDE09G0048' => 'cde', 'CDE11G0805' => 'cde', 'Cfa003644' => 'cfa', 'Cfa006290' => 'cfa', 'Cfa010080' => 'cfa', 'Cfa011376' => 'cfa', 'Cfa011576' => 'cfa', 'Cfa011577' => 'cfa', 'Cfa014389' => 'cfa', 'Ciclev10006044m.g' => 'ccl', 'Ciclev10006954m.g' => 'ccl', 'Ciclev10015131m.g' => 'ccl', 'Ciclev10015580m.g' => 'ccl', 'Ciclev10028359m.g' => 'ccl', 'Ciclev10028573m.g' => 'ccl', 'CiPaw.03G159300' => 'cil', 'CiPaw.04G115100' => 'cil', 'CiPaw.09G092800' => 'cil', 'CiPaw.10G071800' => 'cil', 'CiPaw.13G105800' => 'cil', 'CiPaw.13G141000' => 'cil', 'CiPaw.14G103400' => 'cil', 'ClCG01G012700' => 'cla', 'ClCG01G012720' => 'cla', 'ClCG01G021920' => 'cla', 'ClCG02G008870' => 'cla', 'ClCG02G020840' => 'cla', 'ClCG02G021930' => 'cla', 'COL.COLO4_19302' => 'col', 'COL.COLO4_25262' => 'col', 'COL.COLO4_31788' => 'col', 'Cpa.g.c34684' => 'cpa', 'Cpa.g.c36520.1' => 'cpa', 'Cpa.g.c45626' => 'cpa', 'Cpa.g.sc121.17' => 'cpa', 'Cpa.g.sc13.22' => 'cpa', 'Cpa.g.sc87.88' => 'cpa', 'Cre06.g261800' => 'cre', 'CsaV3_1G014500' => 'csa', 'CsaV3_1G014510' => 'csa', 'CsaV3_2G034880' => 'csa', 'CsaV3_6G014760' => 'csa', 'CsaV3_6G021500' => 'csa', 'CsaV3_6G048980' => 'csa', 'CSS0002511' => 'camsi', 'CSS0007556' => 'camsi', 'CSS0008532' => 'camsi', 'CSS0009709' => 'camsi', 'CSS0010486' => 'camsi', 'CSS0016768' => 'camsi', 'CSS0023512' => 'camsi', 'CSS0025341' => 'camsi', 'CSS0027999' => 'camsi', 'CSS0028944' => 'camsi', 'CSS0032292' => 'camsi', 'CSS0032464' => 'camsi', 'CSS0037153' => 'camsi', 'CSS0039256' => 'camsi', 'CSS0048392' => 'camsi', 'CSS0050458' => 'camsi', 'DCAR_004224' => 'dca', 'DCAR_006147' => 'dca', 'DCAR_006465' => 'dca', 'DCAR_008159' => 'dca', 'DCAR_012164' => 'dca', 'DCAR_019764' => 'dca', 'Dinv05418' => 'din', 'Dinv10839' => 'din', 'Dinv12521' => 'din', 'Dinv13900' => 'din', 'Dinv29426' => 'din', 'Duzib150G0263' => 'dzi', 'Duzib168G1178' => 'dzi', 'Duzib168G1924' => 'dzi', 'Duzib170G0299' => 'dzi', 'Duzib170G0813' => 'dzi', 'Duzib235G1128' => 'dzi', 'Duzib248G1060' => 'dzi', 'ECA232G1910' => 'eca', 'ECA233G4621' => 'eca', 'ECA238G1216' => 'eca', 'ECA238G1784' => 'eca', 'ECA248G1242' => 'eca', 'EL10Ac8g20071' => 'bvu', 'EL10Ac9g21086' => 'bvu', 'EL10Ac9g22407' => 'bvu', 'EL10Ac9g22412' => 'bvu', 'Eucgr.A01119' => 'egr', 'Eucgr.E04043' => 'egr', 'Eucgr.J00428' => 'egr', 'Eucgr.J00958' => 'egr', 'FAN11G3091' => 'fan', 'FAN11G3651' => 'fan', 'FAN16G2566' => 'fan', 'FAN21G3155' => 'fan', 'FAN21G3400' => 'fan', 'FAN21G3543' => 'fan', 'FAN25G0234' => 'fan', 'FAN25G1422' => 'fan', 'FAN25G3392' => 'fan', 'FvH4_3g01940' => 'fve', 'FvH4_3g29870' => 'fve', 'FvH4_3g33680' => 'fve', 'Glyma.09G004200' => 'gma', 'Glyma.11G151288' => 'gma', 'Glyma.11G189100' => 'gma', 'Glyma.12G072500' => 'gma', 'Glyma.12G085500' => 'gma', 'Glyma.12G181800' => 'gma', 'Glyma.12G193000' => 'gma', 'Glyma.13G309300' => 'gma', 'Glyma.13G319000' => 'gma', 'Glyma.17G012600' => 'gma', 'Gohir.A06G148600' => 'ghi', 'Gohir.A07G115800' => 'ghi', 'Gohir.A08G003600' => 'ghi', 'Gohir.A09G093300' => 'ghi', 'Gohir.A09G105400' => 'ghi', 'Gohir.A09G105500' => 'ghi', 'Gohir.D06G154600' => 'ghi', 'Gohir.D07G120200' => 'ghi', 'Gohir.D08G013900' => 'ghi', 'Gohir.D09G093100' => 'ghi', 'Gohir.D09G102200' => 'ghi', 'Gohir.D09G102300' => 'ghi', 'Gorai.001G129400' => 'gra', 'Gorai.004G008200' => 'gra', 'Gorai.006G109800' => 'gra', 'Gorai.006G119500' => 'gra', 'Gorai.006G121300' => 'gra', 'Gorai.010G180700' => 'gra', 'GSVIVG01012716001' => 'vvi', 'GSVIVG01025118001' => 'vvi', 'GSVIVG01030439001' => 'vvi', 'GSVIVG01031397001' => 'vvi', 'HanXRQChr01g0004201' => 'han', 'HanXRQChr02g0054941' => 'han', 'HanXRQChr05g0141811' => 'han', 'HanXRQChr07g0197751' => 'han', 'HanXRQChr11g0346691' => 'han', 'HanXRQChr13g0396971' => 'han', 'HanXRQChr14g0432951' => 'han', 'HanXRQChr14g0452001' => 'han', 'HanXRQChr15g0496681' => 'han', 'HanXRQChr17g0557491' => 'han', 'HanXRQChr17g0557501' => 'han', 'Haze_06809' => 'cav', 'Haze_12852' => 'cav', 'Haze_15850' => 'cav', 'Haze_23446' => 'cav', 'Haze_23942' => 'cav', 'Haze_23943' => 'cav', 'Hma1.2p1_0091F.1_g046450' => 'hma', 'Hma1.2p1_0128F.1_g059910' => 'hma', 'Hma1.2p1_0249F.1_g102260' => 'hma', 'Hma1.2p1_0453F.1_g156190' => 'hma', 'Hma1.2p1_0695F.1_g204380' => 'hma', 'Hma1.2p1_0749F.1_g212650' => 'hma', 'Hma1.2p1_2156F.1_g315420' => 'hma', 'Hma1.2p1_2686F.1_g326940' => 'hma', 'HPP92_006428' => 'vpl', 'HPP92_012069' => 'vpl', 'HPP92_014129' => 'vpl', 'HPP92_014133' => 'vpl', 'HPP92_017315' => 'vpl', 'HPP92_026445' => 'vpl', 'HPP92_026446' => 'vpl', 'Hund00774' => 'sun', 'Hund07682' => 'sun', 'Hund21413' => 'sun', 'Hund23462' => 'sun', 'Hund23463' => 'sun', 'Lalb_Chr03g0027911' => 'lal', 'Lalb_Chr13g0304271' => 'lal', 'Lalb_Chr19g0137471' => 'lal', 'Lalb_Chr22g0350651' => 'lal', 'Lalb_Chr24g0395151' => 'lal', 'Lj1A1231T40' => 'lonja', 'Lj1A221T48' => 'lonja', 'Lj1C924T12' => 'lonja', 'Lj2C993G6' => 'lonja', 'Lj3g0005790' => 'lja', 'Lj3g0015432' => 'lja', 'Lj3g0017722' => 'lja', 'Lj3g0018497' => 'lja', 'Lj4g0025071' => 'lja', 'Lsat_1_v5_gn_1_129680' => 'lsa', 'Lsat_1_v5_gn_2_25321' => 'lsa', 'Lsat_1_v5_gn_2_95461' => 'lsa', 'Lsat_1_v5_gn_4_159620' => 'lsa', 'Lsat_1_v5_gn_6_41301' => 'lsa', 'Lsat_1_v5_gn_6_74660' => 'lsa', 'Lsat_1_v5_gn_7_11520' => 'lsa', 'Lsat_1_v5_gn_9_67680' => 'lsa', 'Manes.04G008300' => 'mes', 'Manes.04G008400' => 'mes', 'Manes.04G026500' => 'mes', 'Manes.10G135300' => 'mes', 'Manes.11G157300' => 'mes', 'Manes.12G074000' => 'mes', 'Manes.16G006200' => 'mes', 'Manes.17G026400' => 'mes', 'Mapoly0024s0086' => 'mpo', 'Mapoly0024s0087' => 'mpo', 'Mapoly0071s0057' => 'mpo', 'Mapoly0204s0012' => 'mpo', 'MBI04_g37681_MAGBIO' => 'mbi', 'MBI05_g17779_MAGBIO' => 'mbi', 'MBI12_g31184_MAGBIO' => 'mbi', 'MBI17_g11083_MAGBIO' => 'mbi', 'MBI18_g03883_MAGBIO' => 'mbi', 'MBI18_g28940_MAGBIO' => 'mbi', 'MCO01G690' => 'mco', 'MD03G1109900' => 'mdo', 'MD03G1134800' => 'mdo', 'MD05G1348000' => 'mdo', 'MD10G1322400' => 'mdo', 'MD11G1123300' => 'mdo', 'MD11G1157600' => 'mdo', 'Medtr2g084875' => 'mtr', 'Medtr2g088130' => 'mtr', 'Medtr4g055310' => 'mtr', 'Medtr4g061070' => 'mtr', 'Medtr4g132250' => 'mtr', 'MELO3C004795.2' => 'cme', 'MELO3C004797.2' => 'cme', 'MELO3C007396.2' => 'cme', 'MELO3C019277.2' => 'cme', 'MELO3C021449.2' => 'cme', 'MELO3C025736.2' => 'cme', 'Migut.D02175' => 'egut', 'Migut.H01573' => 'egut', 'Migut.M01327' => 'egut', 'Migut.N02513' => 'egut', 'MSTRG.14638' => 'ama', 'MSTRG.18632' => 'ama', 'MSTRG.7203' => 'ama', 'Nitab4.5_0000533g0140' => 'nta', 'Nitab4.5_0000888g0150' => 'nta', 'Nitab4.5_0001453g0040' => 'nta', 'Nitab4.5_0002827g0090' => 'nta', 'Nitab4.5_0003082g0040' => 'nta', 'Nitab4.5_0007799g0040' => 'nta', 'Nitab4.5_0008983g0010' => 'nta', 'Nitab4.5_0009017g0020' => 'nta', 'Nn1g02132' => 'nnu', 'Nn1g03492' => 'nnu', 'Nn1g03493' => 'nnu', 'Nn1g03494' => 'nnu', 'Nn1g07164' => 'nnu', 'Nn1g07291' => 'nnu', 'Nn2g10655' => 'nnu', 'Nn2g11652' => 'nnu', 'Nn2g14008' => 'nnu', 'Nn3g17476' => 'nnu', 'Nn3g17477' => 'nnu', 'Nn4g22370' => 'nnu', 'Nn4g25255' => 'nnu', 'Nn5g27755' => 'nnu', 'Nn6g34260' => 'nnu', 'Nn6g35041' => 'nnu', 'Oeu005924.1' => 'oeu', 'Oeu008383.1' => 'oeu', 'Oeu014928.1' => 'oeu', 'Oeu019889.1' => 'oeu', 'Oeu022271.1' => 'oeu', 'Oeu025271.1' => 'oeu', 'Oeu036302.1' => 'oeu', 'Oeu044100.1' => 'oeu', 'Os01g0528300' => 'osa', 'Os03g0286200' => 'osa', 'Os04g0406600' => 'osa', 'Os07g0512000' => 'osa', 'Os07g0694600' => 'osa', 'Os08g0411000' => 'osa', 'Os09g0565700' => 'osa', 'Os09g0566050' => 'osa', 'Os10g0523700' => 'osa', 'Peaxi162Scf00002g00514' => 'pax', 'Peaxi162Scf00047g01817' => 'pax', 'Peaxi162Scf00114g00001' => 'pax', 'Peaxi162Scf00147g00613' => 'pax', 'Peaxi162Scf00389g00425' => 'pax', 'PGR042G1139' => 'pgr', 'PGR042G3273' => 'pgr', 'PGR102G2180' => 'pgr', 'PGR119G0234' => 'pgr', 'PGR119G0668' => 'pgr', 'PGSC0003DMG400007122' => 'stu', 'PGSC0003DMG400016478' => 'stu', 'PGSC0003DMG400025374' => 'stu', 'PGSC0003DMG400026536' => 'stu', 'Phvul.003G079600' => 'pvu', 'Phvul.005G115600' => 'pvu', 'Phvul.005G127100' => 'pvu', 'Phvul.006G149500' => 'pvu', 'Phvul.006G149600' => 'pvu', 'Phvul.011G071800' => 'pvu', 'Phvul.011G090400' => 'pvu', 'Potri.004G013400' => 'ptr', 'Potri.004G188100' => 'ptr', 'Potri.008G195500' => 'ptr', 'Potri.009G148800' => 'ptr', 'Potri.011G004700' => 'ptr', 'Pp3c17_22810' => 'ppa', 'Pp3c18_4480' => 'ppa', 'Pp3c19_13030' => 'ppa', 'Pp3c1_33620' => 'ppa', 'Pp3c2_9380' => 'ppa', 'PRCOL_00001023' => 'pco', 'Prupe.3G216300' => 'ppe', 'Prupe.4G019500' => 'ppe', 'Prupe.6G092500' => 'ppe', 'Prupe.6G119200' => 'ppe', 'Psat0s1945g0080' => 'psa', 'Psat0s4167g0040' => 'psa', 'Psat1g185800' => 'psa', 'Psat4g006440' => 'psa', 'Psat4g006480' => 'psa', 'Psat4g168120' => 'psa', 'Psat5g255680' => 'psa', 'Psat5g261760' => 'psa', 'Psat7g222120' => 'psa', 'PSO063G7252' => 'pso', 'PSO170G4778' => 'pso', 'PSO210G2249' => 'pso', 'PSO339G2411' => 'pso', 'PSO339G2457' => 'pso', 'PSO339G2854' => 'pso', 'PSO339G4288' => 'pso', 'PSO339G4615' => 'pso', 'PSO384G2796' => 'pso', 'PSO384G2940' => 'pso', 'PSO384G4227' => 'pso', 'PSO478G1425' => 'pso', 'PSO541G3863' => 'pso', 'PSO675G0507' => 'pso', 'PSO782G0338' => 'pso', 'PSO832G0644' => 'pso', 'QL01p013664' => 'qlo', 'QL01p036598' => 'qlo', 'QL05p072984' => 'qlo', 'QL08p005768' => 'qlo', 'QL08p032743' => 'qlo', 'QL93p0073_0439' => 'qlo', 'QL93p0073_0444' => 'qlo', 'RcHm_v2.0_Chr5g0002851' => 'rch', 'RcHm_v2.0_Chr5g0055201' => 'rch', 'RcHm_v2.0_Chr5g0061191' => 'rch', 'RcHm_v2.0_Chr7g0203231' => 'rch', 'Rhsim01G0208100' => 'rsi', 'Rhsim01G0208200' => 'rsi', 'Rhsim02G0106500' => 'rsi', 'Rhsim03G0107900' => 'rsi', 'Rhsim06G0163400' => 'rsi', 'Rhsim13G0105200' => 'rsi', 'Sabra04G0006300' => 'sbr', 'Sabra04G0127000' => 'sbr', 'Sabra08G0148700' => 'sbr', 'Sabra09G0117400' => 'sbr', 'SalBow1G3326' => 'sbo', 'SalBow3G3228' => 'sbo', 'SalBow6G1634' => 'sbo', 'SalBow6G3603' => 'sbo', 'SalBow6G5266' => 'sbo', 'SalBow7G2265' => 'sbo', 'SalBow8G0850' => 'sbo', 'SalBow8G2592' => 'sbo', 'Sc05g0009240' => 'sci', 'Sc12g0002300' => 'sci', 'Sc21g0000100' => 'sci', 'Sc21g0004720' => 'sci', 'Sed0002949' => 'sed', 'Sed0004114' => 'sed', 'Sed0004306' => 'sed', 'Sed0006172' => 'sed', 'Sed0008413' => 'sed', 'Sed0013809' => 'sed', 'Sed0019556' => 'sed', 'SEGI_03570' => 'sgi', 'SEGI_07859' => 'sgi', 'SEGI_15042' => 'sgi', 'SEGI_16263' => 'sgi', 'SEGI_16552' => 'sgi', 'SEGI_24331' => 'sgi', 'SEGI_27316' => 'sgi', 'SEGI_29521' => 'sgi', 'SEGI_41342' => 'sgi', 'SGA_v2.0_scaffold27G11617' => 'sas', 'SGA_v2.0_scaffold316G48428' => 'sas', 'SGA_v2.0_scaffold49G18261' => 'sas', 'SGA_v2.0_scaffold7G03831' => 'sas', 'SGA_v2.0_scaffold93G28359' => 'sas', 'SHI02210' => 'shi', 'SHI06028' => 'shi', 'SHI06321' => 'shi', 'SMO111G0012' => 'smo', 'SMO228G0080' => 'smo', 'SMO356G0756' => 'smo', 'Solyc02g080620.3' => 'sly', 'Solyc06g074530.1' => 'sly', 'Solyc11g066890.1' => 'sly', 'Solyc11g072520.3' => 'sly', 'Sopen02g025330' => 'spe', 'Sopen06g031000' => 'spe', 'Sopen09g008240' => 'spe', 'Sopen09g025210' => 'spe', 'Sopen11g026600' => 'spe', 'Sopen11g030170' => 'spe', 'Sp1g10420' => 'spa', 'Sp3g06570' => 'spa', 'Sp4g10660' => 'spa', 'Sp5g16460' => 'spa', 'Sp6g22710' => 'spa', 'TAR365G0112' => 'tar', 'TAR369G0717' => 'tar', 'TAR374G0976' => 'tar', 'TAR623G1128' => 'tar', 'TAR626G1937' => 'tar', 'TAR627G0123' => 'tar', 'TAR628G0305' => 'tar', 'TAR636G1176' => 'tar', 'TAR636G2442' => 'tar', 'THA.LOC104800556' => 'tha', 'THA.LOC104809501' => 'tha', 'THA.LOC104815126' => 'tha', 'THA.LOC104815732' => 'tha', 'THA.LOC104823528' => 'tha', 'Thecc.02G365600' => 'tca', 'Thecc.06G222300' => 'tca', 'Thecc.09G261800' => 'tca', 'Thecc.09G291400' => 'tca', 'Thhalv10003028m.g' => 'esa', 'Thhalv10007886m.g' => 'esa', 'Thhalv10016085m.g' => 'esa', 'Thhalv10016681m.g' => 'esa', 'Thhalv10020951m.g' => 'esa', 'TPR.G15598' => 'tpr', 'TPR.G29305' => 'tpr', 'TPR.G32395' => 'tpr', 'TPR.G36998' => 'tpr', 'TPR.G4227' => 'tpr', 'TWI18G1433' => 'twi', 'TWI31G0755' => 'twi', 'TWI38G0912' => 'twi', 'TWI75G1097' => 'twi', 'TWI75G1619' => 'twi', 'TWI79G1336' => 'twi', 'unitig_0.g943' => 'ugi', 'unitig_0.g944' => 'ugi', 'unitig_22.g6646' => 'ugi', 'unitig_37.g12681' => 'ugi', 'unitig_8.g3290' => 'ugi', 'vmacro03278' => 'vma', 'vmacro12197' => 'vma', 'vmacro14478' => 'vma', 'vmacro15787' => 'vma', 'vmacro15789' => 'vma', 'vmacro15790' => 'vma', 'vmacro15806' => 'vma', 'vmacro22907' => 'vma', 'vmacro22908' => 'vma', 'vmacro22909' => 'vma', 'vmacro23108' => 'vma', 'VMungo0540G0540' => 'vmu', 'VMungo0540G2468' => 'vmu', 'VMungo1080G0390' => 'vmu', 'VMungo1080G1165' => 'vmu', 'VMungo1127G0170' => 'vmu', 'VMungo1127G2099' => 'vmu', 'VMungo1215G3013' => 'vmu', 'Zm00001eb013110' => 'zma', 'Zm00001eb084260' => 'zma', 'Zm00001eb096110' => 'zma', 'Zm00001eb217510' => 'zma', 'Zm00001eb322550' => 'zma', 'Zm00001eb390770' => 'zma', 'Zm00001eb397170' => 'zma', 'Zm00001eb404610' => 'zma', 'Zm00001eb421790' => 'zma' ) $gf_id = 'HOM05D000911' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000911' ) $data_identifier = 'HOM05D000911' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 16, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 5, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 6, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 8, 'nnu' => (int) 16, 'oeu' => (int) 8, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 5, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 16, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421790' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000911', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27780' => 'bna', 'A03p35380' => 'bna', 'A04p21160' => 'bna', 'A05p40570' => 'bna', 'A06p26900' => 'bna', 'A08p33230' => 'bna', 'A09p65960' => 'bna', 'A10p18290' => 'bna', 'Aa31LG1G12990' => 'aar', 'Aa31LG1G2980' => 'aar', 'Aa31LG4G14320' => 'aar', 'Aa31LG7G11800' => 'aar', 'Aa31sc36G50' => 'aar', 'Aa31sc36G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3721' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5459' => 'aag', 'Actinidia03028' => 'ach', 'Actinidia03753' => 'ach', 'Actinidia04187' => 'ach', 'Actinidia05509' => 'ach', 'Actinidia24180' => 'ach', 'Actinidia26906' => 'ach', 'Actinidia37097' => 'ach', 'Actinidia38249' => 'ach', 'Ah.01g003470' => 'amhyb', 'Ah.01g004580' => 'amhyb', 'Ah.01g014850' => 'amhyb', 'Ah.01g016830' => 'amhyb', 'Ah.14g088000' => 'amhyb', 'AL1G22980' => 'aly', 'AL3G18990' => 'aly', 'AL4G22440' => 'aly', 'AL4G33180' => 'aly', 'AL5G22920' => 'aly', 'AL6G33660' => 'aly', 'AL8G20720' => 'aly', 'Aqoxy1G00935' => 'aox', 'Aqoxy1G02094' => 'aox', 'Aqoxy2G01239' => 'aox', 'Aqoxy4G01870' => 'aox', 'Aqoxy7G00450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.36ZVTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71EM27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5D6C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH3WRE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3NCM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RIM768' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YB5YRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z36GDV' => 'arhy', 'AT1G08250' => 'ath', 'AT1G11790' => 'ath', 'AT2G27820' => 'ath', 'AT3G07630' => 'ath', 'AT3G44720' => 'ath', 'AT5G22630' => 'ath', 'ATR0693G304' => 'atr', 'ATR0794G109' => 'atr', 'ATR0820G120' => 'atr', 'ATR1159G064' => 'atr', 'Atru.chr10.2239' => 'acertr', 'Atru.chr3.3371' => 'acertr', 'Atru.chr6.3202' => 'acertr', 'AUR62006499' => 'cqu', 'AUR62012718' => 'cqu', 'AUR62021938' => 'cqu', 'AUR62023932' => 'cqu', 'AUR62025034' => 'cqu', 'AUR62025035' => 'cqu', 'AUR62038307' => 'cqu', 'AUR62043466' => 'cqu', 'BcaB02g10748' => 'bca', 'BcaB03g13231' => 'bca', 'BcaB03g14689' => 'bca', 'BcaB05g22716' => 'bca', 'BcaB06g28172' => 'bca', 'BcaB08g36413' => 'bca', 'BcaC01g02186' => 'bca', 'BcaC01g04272' => 'bca', 'BcaC02g08080' => 'bca', 'BcaC02g08227' => 'bca', 'BcaC03g13901' => 'bca', 'BcaC04g19593' => 'bca', 'BcaC04g20874' => 'bca', 'BcaC05g29557' => 'bca', 'BcaC06g35505' => 'bca', 'BcaC07g41954' => 'bca', 'BcaC07g41955' => 'bca', 'BcaC07g41956' => 'bca', 'BcaC07g42519' => 'bca', 'BcaC07g42520' => 'bca', 'BcaC07g42523' => 'bca', 'BcaC07g42524' => 'bca', 'BcaC07g42525' => 'bca', 'BcaC08g47480' => 'bca', 'BcaC08g47481' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00530' => 'bna', 'BolC2t07178H' => 'bol', 'BolC3t16567H' => 'bol', 'BolC4t27234H' => 'bol', 'BolC5t29728H' => 'bol', 'BolC5t34622H' => 'bol', 'BolC6t40321H' => 'bol', 'BolC7t42028H' => 'bol', 'BolC8t49125H' => 'bol', 'BolC8t52538H' => 'bol', 'BolC8t52539H' => 'bol', 'BolC9t56681H' => 'bol', 'BolC9t58266H' => 'bol', 'BolSC21t60294H' => 'bol', 'BraA02t05670Z' => 'bra', 'BraA03t12716Z' => 'bra', 'BraA04t17685Z' => 'bra', 'BraA05t22788Z' => 'bra', 'BraA06t24032Z' => 'bra', 'BraA06t25625Z' => 'bra', 'BraA07t27930Z' => 'bra', 'BraA08t35242Z' => 'bra', 'BraA09t38609Z' => 'bra', 'BraA10t43905Z' => 'bra', 'C02p11060' => 'bna', 'C03p42990' => 'bna', 'C03p67310' => 'bna', 'C04p56990' => 'bna', 'C04p58660' => 'bna', 'C05p09890' => 'bna', 'C05p59680' => 'bna', 'C06p19830' => 'bna', 'C06p53040' => 'bna', 'C07p15230' => 'bna', 'C08p50070' => 'bna', 'C08p50090' => 'bna', 'C09p38330' => 'bna', 'C09p53940' => 'bna', 'CAN.G1014.1' => 'can', 'CAN.G644.30' => 'can', 'CAN.G84.47' => 'can', 'CAN.G919.8' => 'can', 'CANSAT54G0113' => 'cansat', 'CANSAT54G1286' => 'cansat', 'CANSAT64G1020' => 'cansat', 'CARHR008080' => 'chi', 'CARHR008090' => 'chi', 'CARHR012130' => 'chi', 'CARHR038390' => 'chi', 'CARHR082330' => 'chi', 'CARHR120520' => 'chi', 'CARHR151470' => 'chi', 'CARHR190950' => 'chi', 'Carub.0001s0760' => 'cru', 'Carub.0001s1146' => 'cru', 'Carub.0003s0721' => 'cru', 'Carub.0004s0858' => 'cru', 'Carub.0005s1040' => 'cru', 'Carub.0006s2035' => 'cru', 'Carub.0015s0005' => 'cru', 'Ca_01607_v3' => 'car', 'Ca_01677_v3' => 'car', 'Ca_06087_v3' => 'car', 'Ca_19238_v3' => 'car', 'Ca_19373_v3' => 'car', 'Ca_21079_v3' => 'car', 'CBR_g54016' => 'cbr', 'CBR_g54018' => 'cbr', 'CBR_g54020' => 'cbr', 'Cc01_g09780' => 'ccan', 'Cc01_g11680' => 'ccan', 'Cc02_g15610' => 'ccan', 'Cc05_g04350' => 'ccan', 'Cc09_g01580' => 'ccan', 'CDE01G0795' => 'cde', 'CDE02G2024' => 'cde', 'CDE02G2260' => 'cde', 'CDE02G4561' => 'cde', 'CDE05G2733' => 'cde', 'CDE05G3422' => 'cde', 'CDE06G2003' => 'cde', 'CDE08G0576' => 'cde', 'CDE09G0048' => 'cde', 'CDE11G0805' => 'cde', 'Cfa003644' => 'cfa', 'Cfa006290' => 'cfa', 'Cfa010080' => 'cfa', 'Cfa011376' => 'cfa', 'Cfa011576' => 'cfa', 'Cfa011577' => 'cfa', 'Cfa014389' => 'cfa', 'Ciclev10006044m.g' => 'ccl', 'Ciclev10006954m.g' => 'ccl', 'Ciclev10015131m.g' => 'ccl', 'Ciclev10015580m.g' => 'ccl', 'Ciclev10028359m.g' => 'ccl', 'Ciclev10028573m.g' => 'ccl', 'CiPaw.03G159300' => 'cil', 'CiPaw.04G115100' => 'cil', 'CiPaw.09G092800' => 'cil', 'CiPaw.10G071800' => 'cil', 'CiPaw.13G105800' => 'cil', 'CiPaw.13G141000' => 'cil', 'CiPaw.14G103400' => 'cil', 'ClCG01G012700' => 'cla', 'ClCG01G012720' => 'cla', 'ClCG01G021920' => 'cla', 'ClCG02G008870' => 'cla', 'ClCG02G020840' => 'cla', 'ClCG02G021930' => 'cla', 'COL.COLO4_19302' => 'col', 'COL.COLO4_25262' => 'col', 'COL.COLO4_31788' => 'col', 'Cpa.g.c34684' => 'cpa', 'Cpa.g.c36520.1' => 'cpa', 'Cpa.g.c45626' => 'cpa', 'Cpa.g.sc121.17' => 'cpa', 'Cpa.g.sc13.22' => 'cpa', 'Cpa.g.sc87.88' => 'cpa', 'Cre06.g261800' => 'cre', 'CsaV3_1G014500' => 'csa', 'CsaV3_1G014510' => 'csa', 'CsaV3_2G034880' => 'csa', 'CsaV3_6G014760' => 'csa', 'CsaV3_6G021500' => 'csa', 'CsaV3_6G048980' => 'csa', 'CSS0002511' => 'camsi', 'CSS0007556' => 'camsi', 'CSS0008532' => 'camsi', 'CSS0009709' => 'camsi', 'CSS0010486' => 'camsi', 'CSS0016768' => 'camsi', 'CSS0023512' => 'camsi', 'CSS0025341' => 'camsi', 'CSS0027999' => 'camsi', 'CSS0028944' => 'camsi', 'CSS0032292' => 'camsi', 'CSS0032464' => 'camsi', 'CSS0037153' => 'camsi', 'CSS0039256' => 'camsi', 'CSS0048392' => 'camsi', 'CSS0050458' => 'camsi', 'DCAR_004224' => 'dca', 'DCAR_006147' => 'dca', 'DCAR_006465' => 'dca', 'DCAR_008159' => 'dca', 'DCAR_012164' => 'dca', 'DCAR_019764' => 'dca', 'Dinv05418' => 'din', 'Dinv10839' => 'din', 'Dinv12521' => 'din', 'Dinv13900' => 'din', 'Dinv29426' => 'din', 'Duzib150G0263' => 'dzi', 'Duzib168G1178' => 'dzi', 'Duzib168G1924' => 'dzi', 'Duzib170G0299' => 'dzi', 'Duzib170G0813' => 'dzi', 'Duzib235G1128' => 'dzi', 'Duzib248G1060' => 'dzi', 'ECA232G1910' => 'eca', 'ECA233G4621' => 'eca', 'ECA238G1216' => 'eca', 'ECA238G1784' => 'eca', 'ECA248G1242' => 'eca', 'EL10Ac8g20071' => 'bvu', 'EL10Ac9g21086' => 'bvu', 'EL10Ac9g22407' => 'bvu', 'EL10Ac9g22412' => 'bvu', 'Eucgr.A01119' => 'egr', 'Eucgr.E04043' => 'egr', 'Eucgr.J00428' => 'egr', 'Eucgr.J00958' => 'egr', 'FAN11G3091' => 'fan', 'FAN11G3651' => 'fan', 'FAN16G2566' => 'fan', 'FAN21G3155' => 'fan', 'FAN21G3400' => 'fan', 'FAN21G3543' => 'fan', 'FAN25G0234' => 'fan', 'FAN25G1422' => 'fan', 'FAN25G3392' => 'fan', 'FvH4_3g01940' => 'fve', 'FvH4_3g29870' => 'fve', 'FvH4_3g33680' => 'fve', 'Glyma.09G004200' => 'gma', 'Glyma.11G151288' => 'gma', 'Glyma.11G189100' => 'gma', 'Glyma.12G072500' => 'gma', 'Glyma.12G085500' => 'gma', 'Glyma.12G181800' => 'gma', 'Glyma.12G193000' => 'gma', 'Glyma.13G309300' => 'gma', 'Glyma.13G319000' => 'gma', 'Glyma.17G012600' => 'gma', 'Gohir.A06G148600' => 'ghi', 'Gohir.A07G115800' => 'ghi', 'Gohir.A08G003600' => 'ghi', 'Gohir.A09G093300' => 'ghi', 'Gohir.A09G105400' => 'ghi', 'Gohir.A09G105500' => 'ghi', 'Gohir.D06G154600' => 'ghi', 'Gohir.D07G120200' => 'ghi', 'Gohir.D08G013900' => 'ghi', 'Gohir.D09G093100' => 'ghi', 'Gohir.D09G102200' => 'ghi', 'Gohir.D09G102300' => 'ghi', 'Gorai.001G129400' => 'gra', 'Gorai.004G008200' => 'gra', 'Gorai.006G109800' => 'gra', 'Gorai.006G119500' => 'gra', 'Gorai.006G121300' => 'gra', 'Gorai.010G180700' => 'gra', 'GSVIVG01012716001' => 'vvi', 'GSVIVG01025118001' => 'vvi', 'GSVIVG01030439001' => 'vvi', 'GSVIVG01031397001' => 'vvi', 'HanXRQChr01g0004201' => 'han', 'HanXRQChr02g0054941' => 'han', 'HanXRQChr05g0141811' => 'han', 'HanXRQChr07g0197751' => 'han', 'HanXRQChr11g0346691' => 'han', 'HanXRQChr13g0396971' => 'han', 'HanXRQChr14g0432951' => 'han', 'HanXRQChr14g0452001' => 'han', 'HanXRQChr15g0496681' => 'han', 'HanXRQChr17g0557491' => 'han', 'HanXRQChr17g0557501' => 'han', 'Haze_06809' => 'cav', 'Haze_12852' => 'cav', 'Haze_15850' => 'cav', 'Haze_23446' => 'cav', 'Haze_23942' => 'cav', 'Haze_23943' => 'cav', 'Hma1.2p1_0091F.1_g046450' => 'hma', 'Hma1.2p1_0128F.1_g059910' => 'hma', 'Hma1.2p1_0249F.1_g102260' => 'hma', 'Hma1.2p1_0453F.1_g156190' => 'hma', 'Hma1.2p1_0695F.1_g204380' => 'hma', 'Hma1.2p1_0749F.1_g212650' => 'hma', 'Hma1.2p1_2156F.1_g315420' => 'hma', 'Hma1.2p1_2686F.1_g326940' => 'hma', 'HPP92_006428' => 'vpl', 'HPP92_012069' => 'vpl', 'HPP92_014129' => 'vpl', 'HPP92_014133' => 'vpl', 'HPP92_017315' => 'vpl', 'HPP92_026445' => 'vpl', 'HPP92_026446' => 'vpl', 'Hund00774' => 'sun', 'Hund07682' => 'sun', 'Hund21413' => 'sun', 'Hund23462' => 'sun', 'Hund23463' => 'sun', 'Lalb_Chr03g0027911' => 'lal', 'Lalb_Chr13g0304271' => 'lal', 'Lalb_Chr19g0137471' => 'lal', 'Lalb_Chr22g0350651' => 'lal', 'Lalb_Chr24g0395151' => 'lal', 'Lj1A1231T40' => 'lonja', 'Lj1A221T48' => 'lonja', 'Lj1C924T12' => 'lonja', 'Lj2C993G6' => 'lonja', 'Lj3g0005790' => 'lja', 'Lj3g0015432' => 'lja', 'Lj3g0017722' => 'lja', 'Lj3g0018497' => 'lja', 'Lj4g0025071' => 'lja', 'Lsat_1_v5_gn_1_129680' => 'lsa', 'Lsat_1_v5_gn_2_25321' => 'lsa', 'Lsat_1_v5_gn_2_95461' => 'lsa', 'Lsat_1_v5_gn_4_159620' => 'lsa', 'Lsat_1_v5_gn_6_41301' => 'lsa', 'Lsat_1_v5_gn_6_74660' => 'lsa', 'Lsat_1_v5_gn_7_11520' => 'lsa', 'Lsat_1_v5_gn_9_67680' => 'lsa', 'Manes.04G008300' => 'mes', 'Manes.04G008400' => 'mes', 'Manes.04G026500' => 'mes', 'Manes.10G135300' => 'mes', 'Manes.11G157300' => 'mes', 'Manes.12G074000' => 'mes', 'Manes.16G006200' => 'mes', 'Manes.17G026400' => 'mes', 'Mapoly0024s0086' => 'mpo', 'Mapoly0024s0087' => 'mpo', 'Mapoly0071s0057' => 'mpo', 'Mapoly0204s0012' => 'mpo', 'MBI04_g37681_MAGBIO' => 'mbi', 'MBI05_g17779_MAGBIO' => 'mbi', 'MBI12_g31184_MAGBIO' => 'mbi', 'MBI17_g11083_MAGBIO' => 'mbi', 'MBI18_g03883_MAGBIO' => 'mbi', 'MBI18_g28940_MAGBIO' => 'mbi', 'MCO01G690' => 'mco', 'MD03G1109900' => 'mdo', 'MD03G1134800' => 'mdo', 'MD05G1348000' => 'mdo', 'MD10G1322400' => 'mdo', 'MD11G1123300' => 'mdo', 'MD11G1157600' => 'mdo', 'Medtr2g084875' => 'mtr', 'Medtr2g088130' => 'mtr', 'Medtr4g055310' => 'mtr', 'Medtr4g061070' => 'mtr', 'Medtr4g132250' => 'mtr', 'MELO3C004795.2' => 'cme', 'MELO3C004797.2' => 'cme', 'MELO3C007396.2' => 'cme', 'MELO3C019277.2' => 'cme', 'MELO3C021449.2' => 'cme', 'MELO3C025736.2' => 'cme', 'Migut.D02175' => 'egut', 'Migut.H01573' => 'egut', 'Migut.M01327' => 'egut', 'Migut.N02513' => 'egut', 'MSTRG.14638' => 'ama', 'MSTRG.18632' => 'ama', 'MSTRG.7203' => 'ama', 'Nitab4.5_0000533g0140' => 'nta', 'Nitab4.5_0000888g0150' => 'nta', 'Nitab4.5_0001453g0040' => 'nta', 'Nitab4.5_0002827g0090' => 'nta', 'Nitab4.5_0003082g0040' => 'nta', 'Nitab4.5_0007799g0040' => 'nta', 'Nitab4.5_0008983g0010' => 'nta', 'Nitab4.5_0009017g0020' => 'nta', 'Nn1g02132' => 'nnu', 'Nn1g03492' => 'nnu', 'Nn1g03493' => 'nnu', 'Nn1g03494' => 'nnu', 'Nn1g07164' => 'nnu', 'Nn1g07291' => 'nnu', 'Nn2g10655' => 'nnu', 'Nn2g11652' => 'nnu', 'Nn2g14008' => 'nnu', 'Nn3g17476' => 'nnu', 'Nn3g17477' => 'nnu', 'Nn4g22370' => 'nnu', 'Nn4g25255' => 'nnu', 'Nn5g27755' => 'nnu', 'Nn6g34260' => 'nnu', 'Nn6g35041' => 'nnu', 'Oeu005924.1' => 'oeu', 'Oeu008383.1' => 'oeu', 'Oeu014928.1' => 'oeu', 'Oeu019889.1' => 'oeu', 'Oeu022271.1' => 'oeu', 'Oeu025271.1' => 'oeu', 'Oeu036302.1' => 'oeu', 'Oeu044100.1' => 'oeu', 'Os01g0528300' => 'osa', 'Os03g0286200' => 'osa', 'Os04g0406600' => 'osa', 'Os07g0512000' => 'osa', 'Os07g0694600' => 'osa', 'Os08g0411000' => 'osa', 'Os09g0565700' => 'osa', 'Os09g0566050' => 'osa', 'Os10g0523700' => 'osa', 'Peaxi162Scf00002g00514' => 'pax', 'Peaxi162Scf00047g01817' => 'pax', 'Peaxi162Scf00114g00001' => 'pax', 'Peaxi162Scf00147g00613' => 'pax', 'Peaxi162Scf00389g00425' => 'pax', 'PGR042G1139' => 'pgr', 'PGR042G3273' => 'pgr', 'PGR102G2180' => 'pgr', 'PGR119G0234' => 'pgr', 'PGR119G0668' => 'pgr', 'PGSC0003DMG400007122' => 'stu', 'PGSC0003DMG400016478' => 'stu', 'PGSC0003DMG400025374' => 'stu', 'PGSC0003DMG400026536' => 'stu', 'Phvul.003G079600' => 'pvu', 'Phvul.005G115600' => 'pvu', 'Phvul.005G127100' => 'pvu', 'Phvul.006G149500' => 'pvu', 'Phvul.006G149600' => 'pvu', 'Phvul.011G071800' => 'pvu', 'Phvul.011G090400' => 'pvu', 'Potri.004G013400' => 'ptr', 'Potri.004G188100' => 'ptr', 'Potri.008G195500' => 'ptr', 'Potri.009G148800' => 'ptr', 'Potri.011G004700' => 'ptr', 'Pp3c17_22810' => 'ppa', 'Pp3c18_4480' => 'ppa', 'Pp3c19_13030' => 'ppa', 'Pp3c1_33620' => 'ppa', 'Pp3c2_9380' => 'ppa', 'PRCOL_00001023' => 'pco', 'Prupe.3G216300' => 'ppe', 'Prupe.4G019500' => 'ppe', 'Prupe.6G092500' => 'ppe', 'Prupe.6G119200' => 'ppe', 'Psat0s1945g0080' => 'psa', 'Psat0s4167g0040' => 'psa', 'Psat1g185800' => 'psa', 'Psat4g006440' => 'psa', 'Psat4g006480' => 'psa', 'Psat4g168120' => 'psa', 'Psat5g255680' => 'psa', 'Psat5g261760' => 'psa', 'Psat7g222120' => 'psa', 'PSO063G7252' => 'pso', 'PSO170G4778' => 'pso', 'PSO210G2249' => 'pso', 'PSO339G2411' => 'pso', 'PSO339G2457' => 'pso', 'PSO339G2854' => 'pso', 'PSO339G4288' => 'pso', 'PSO339G4615' => 'pso', 'PSO384G2796' => 'pso', 'PSO384G2940' => 'pso', 'PSO384G4227' => 'pso', 'PSO478G1425' => 'pso', 'PSO541G3863' => 'pso', 'PSO675G0507' => 'pso', 'PSO782G0338' => 'pso', 'PSO832G0644' => 'pso', 'QL01p013664' => 'qlo', 'QL01p036598' => 'qlo', 'QL05p072984' => 'qlo', 'QL08p005768' => 'qlo', 'QL08p032743' => 'qlo', 'QL93p0073_0439' => 'qlo', 'QL93p0073_0444' => 'qlo', 'RcHm_v2.0_Chr5g0002851' => 'rch', 'RcHm_v2.0_Chr5g0055201' => 'rch', 'RcHm_v2.0_Chr5g0061191' => 'rch', 'RcHm_v2.0_Chr7g0203231' => 'rch', 'Rhsim01G0208100' => 'rsi', 'Rhsim01G0208200' => 'rsi', 'Rhsim02G0106500' => 'rsi', 'Rhsim03G0107900' => 'rsi', 'Rhsim06G0163400' => 'rsi', 'Rhsim13G0105200' => 'rsi', 'Sabra04G0006300' => 'sbr', 'Sabra04G0127000' => 'sbr', 'Sabra08G0148700' => 'sbr', 'Sabra09G0117400' => 'sbr', 'SalBow1G3326' => 'sbo', 'SalBow3G3228' => 'sbo', 'SalBow6G1634' => 'sbo', 'SalBow6G3603' => 'sbo', 'SalBow6G5266' => 'sbo', 'SalBow7G2265' => 'sbo', 'SalBow8G0850' => 'sbo', 'SalBow8G2592' => 'sbo', 'Sc05g0009240' => 'sci', 'Sc12g0002300' => 'sci', 'Sc21g0000100' => 'sci', 'Sc21g0004720' => 'sci', 'Sed0002949' => 'sed', 'Sed0004114' => 'sed', 'Sed0004306' => 'sed', 'Sed0006172' => 'sed', 'Sed0008413' => 'sed', 'Sed0013809' => 'sed', 'Sed0019556' => 'sed', 'SEGI_03570' => 'sgi', 'SEGI_07859' => 'sgi', 'SEGI_15042' => 'sgi', 'SEGI_16263' => 'sgi', 'SEGI_16552' => 'sgi', 'SEGI_24331' => 'sgi', 'SEGI_27316' => 'sgi', 'SEGI_29521' => 'sgi', 'SEGI_41342' => 'sgi', 'SGA_v2.0_scaffold27G11617' => 'sas', 'SGA_v2.0_scaffold316G48428' => 'sas', 'SGA_v2.0_scaffold49G18261' => 'sas', 'SGA_v2.0_scaffold7G03831' => 'sas', 'SGA_v2.0_scaffold93G28359' => 'sas', 'SHI02210' => 'shi', 'SHI06028' => 'shi', 'SHI06321' => 'shi', 'SMO111G0012' => 'smo', 'SMO228G0080' => 'smo', 'SMO356G0756' => 'smo', 'Solyc02g080620.3' => 'sly', 'Solyc06g074530.1' => 'sly', 'Solyc11g066890.1' => 'sly', 'Solyc11g072520.3' => 'sly', 'Sopen02g025330' => 'spe', 'Sopen06g031000' => 'spe', 'Sopen09g008240' => 'spe', 'Sopen09g025210' => 'spe', 'Sopen11g026600' => 'spe', 'Sopen11g030170' => 'spe', 'Sp1g10420' => 'spa', 'Sp3g06570' => 'spa', 'Sp4g10660' => 'spa', 'Sp5g16460' => 'spa', 'Sp6g22710' => 'spa', 'TAR365G0112' => 'tar', 'TAR369G0717' => 'tar', 'TAR374G0976' => 'tar', 'TAR623G1128' => 'tar', 'TAR626G1937' => 'tar', 'TAR627G0123' => 'tar', 'TAR628G0305' => 'tar', 'TAR636G1176' => 'tar', 'TAR636G2442' => 'tar', 'THA.LOC104800556' => 'tha', 'THA.LOC104809501' => 'tha', 'THA.LOC104815126' => 'tha', 'THA.LOC104815732' => 'tha', 'THA.LOC104823528' => 'tha', 'Thecc.02G365600' => 'tca', 'Thecc.06G222300' => 'tca', 'Thecc.09G261800' => 'tca', 'Thecc.09G291400' => 'tca', 'Thhalv10003028m.g' => 'esa', 'Thhalv10007886m.g' => 'esa', 'Thhalv10016085m.g' => 'esa', 'Thhalv10016681m.g' => 'esa', 'Thhalv10020951m.g' => 'esa', 'TPR.G15598' => 'tpr', 'TPR.G29305' => 'tpr', 'TPR.G32395' => 'tpr', 'TPR.G36998' => 'tpr', 'TPR.G4227' => 'tpr', 'TWI18G1433' => 'twi', 'TWI31G0755' => 'twi', 'TWI38G0912' => 'twi', 'TWI75G1097' => 'twi', 'TWI75G1619' => 'twi', 'TWI79G1336' => 'twi', 'unitig_0.g943' => 'ugi', 'unitig_0.g944' => 'ugi', 'unitig_22.g6646' => 'ugi', 'unitig_37.g12681' => 'ugi', 'unitig_8.g3290' => 'ugi', 'vmacro03278' => 'vma', 'vmacro12197' => 'vma', 'vmacro14478' => 'vma', 'vmacro15787' => 'vma', 'vmacro15789' => 'vma', 'vmacro15790' => 'vma', 'vmacro15806' => 'vma', 'vmacro22907' => 'vma', 'vmacro22908' => 'vma', 'vmacro22909' => 'vma', 'vmacro23108' => 'vma', 'VMungo0540G0540' => 'vmu', 'VMungo0540G2468' => 'vmu', 'VMungo1080G0390' => 'vmu', 'VMungo1080G1165' => 'vmu', 'VMungo1127G0170' => 'vmu', 'VMungo1127G2099' => 'vmu', 'VMungo1215G3013' => 'vmu', 'Zm00001eb013110' => 'zma', 'Zm00001eb084260' => 'zma', 'Zm00001eb096110' => 'zma', 'Zm00001eb217510' => 'zma', 'Zm00001eb322550' => 'zma', 'Zm00001eb390770' => 'zma', 'Zm00001eb397170' => 'zma', 'Zm00001eb404610' => 'zma', 'Zm00001eb421790' => 'zma' ), 'gf_id' => 'HOM05D000911', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000911' ), 'data_identifier' => 'HOM05D000911', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000911', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27780' => 'bna', 'A03p35380' => 'bna', 'A04p21160' => 'bna', 'A05p40570' => 'bna', 'A06p26900' => 'bna', 'A08p33230' => 'bna', 'A09p65960' => 'bna', 'A10p18290' => 'bna', 'Aa31LG1G12990' => 'aar', 'Aa31LG1G2980' => 'aar', 'Aa31LG4G14320' => 'aar', 'Aa31LG7G11800' => 'aar', 'Aa31sc36G50' => 'aar', 'Aa31sc36G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3721' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5459' => 'aag', 'Actinidia03028' => 'ach', 'Actinidia03753' => 'ach', 'Actinidia04187' => 'ach', 'Actinidia05509' => 'ach', 'Actinidia24180' => 'ach', 'Actinidia26906' => 'ach', 'Actinidia37097' => 'ach', 'Actinidia38249' => 'ach', 'Ah.01g003470' => 'amhyb', 'Ah.01g004580' => 'amhyb', 'Ah.01g014850' => 'amhyb', 'Ah.01g016830' => 'amhyb', 'Ah.14g088000' => 'amhyb', 'AL1G22980' => 'aly', 'AL3G18990' => 'aly', 'AL4G22440' => 'aly', 'AL4G33180' => 'aly', 'AL5G22920' => 'aly', 'AL6G33660' => 'aly', 'AL8G20720' => 'aly', 'Aqoxy1G00935' => 'aox', 'Aqoxy1G02094' => 'aox', 'Aqoxy2G01239' => 'aox', 'Aqoxy4G01870' => 'aox', 'Aqoxy7G00450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.36ZVTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71EM27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5D6C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH3WRE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3NCM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RIM768' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YB5YRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z36GDV' => 'arhy', 'AT1G08250' => 'ath', 'AT1G11790' => 'ath', 'AT2G27820' => 'ath', 'AT3G07630' => 'ath', 'AT3G44720' => 'ath', 'AT5G22630' => 'ath', 'ATR0693G304' => 'atr', 'ATR0794G109' => 'atr', 'ATR0820G120' => 'atr', 'ATR1159G064' => 'atr', 'Atru.chr10.2239' => 'acertr', 'Atru.chr3.3371' => 'acertr', 'Atru.chr6.3202' => 'acertr', 'AUR62006499' => 'cqu', 'AUR62012718' => 'cqu', 'AUR62021938' => 'cqu', 'AUR62023932' => 'cqu', 'AUR62025034' => 'cqu', 'AUR62025035' => 'cqu', 'AUR62038307' => 'cqu', 'AUR62043466' => 'cqu', 'BcaB02g10748' => 'bca', 'BcaB03g13231' => 'bca', 'BcaB03g14689' => 'bca', 'BcaB05g22716' => 'bca', 'BcaB06g28172' => 'bca', 'BcaB08g36413' => 'bca', 'BcaC01g02186' => 'bca', 'BcaC01g04272' => 'bca', 'BcaC02g08080' => 'bca', 'BcaC02g08227' => 'bca', 'BcaC03g13901' => 'bca', 'BcaC04g19593' => 'bca', 'BcaC04g20874' => 'bca', 'BcaC05g29557' => 'bca', 'BcaC06g35505' => 'bca', 'BcaC07g41954' => 'bca', 'BcaC07g41955' => 'bca', 'BcaC07g41956' => 'bca', 'BcaC07g42519' => 'bca', 'BcaC07g42520' => 'bca', 'BcaC07g42523' => 'bca', 'BcaC07g42524' => 'bca', 'BcaC07g42525' => 'bca', 'BcaC08g47480' => 'bca', 'BcaC08g47481' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00530' => 'bna', 'BolC2t07178H' => 'bol', 'BolC3t16567H' => 'bol', 'BolC4t27234H' => 'bol', 'BolC5t29728H' => 'bol', 'BolC5t34622H' => 'bol', 'BolC6t40321H' => 'bol', 'BolC7t42028H' => 'bol', 'BolC8t49125H' => 'bol', 'BolC8t52538H' => 'bol', 'BolC8t52539H' => 'bol', 'BolC9t56681H' => 'bol', 'BolC9t58266H' => 'bol', 'BolSC21t60294H' => 'bol', 'BraA02t05670Z' => 'bra', 'BraA03t12716Z' => 'bra', 'BraA04t17685Z' => 'bra', 'BraA05t22788Z' => 'bra', 'BraA06t24032Z' => 'bra', 'BraA06t25625Z' => 'bra', 'BraA07t27930Z' => 'bra', 'BraA08t35242Z' => 'bra', 'BraA09t38609Z' => 'bra', 'BraA10t43905Z' => 'bra', 'C02p11060' => 'bna', 'C03p42990' => 'bna', 'C03p67310' => 'bna', 'C04p56990' => 'bna', 'C04p58660' => 'bna', 'C05p09890' => 'bna', 'C05p59680' => 'bna', 'C06p19830' => 'bna', 'C06p53040' => 'bna', 'C07p15230' => 'bna', 'C08p50070' => 'bna', 'C08p50090' => 'bna', 'C09p38330' => 'bna', 'C09p53940' => 'bna', 'CAN.G1014.1' => 'can', 'CAN.G644.30' => 'can', 'CAN.G84.47' => 'can', 'CAN.G919.8' => 'can', 'CANSAT54G0113' => 'cansat', 'CANSAT54G1286' => 'cansat', 'CANSAT64G1020' => 'cansat', 'CARHR008080' => 'chi', 'CARHR008090' => 'chi', 'CARHR012130' => 'chi', 'CARHR038390' => 'chi', 'CARHR082330' => 'chi', 'CARHR120520' => 'chi', 'CARHR151470' => 'chi', 'CARHR190950' => 'chi', 'Carub.0001s0760' => 'cru', 'Carub.0001s1146' => 'cru', 'Carub.0003s0721' => 'cru', 'Carub.0004s0858' => 'cru', 'Carub.0005s1040' => 'cru', 'Carub.0006s2035' => 'cru', 'Carub.0015s0005' => 'cru', 'Ca_01607_v3' => 'car', 'Ca_01677_v3' => 'car', 'Ca_06087_v3' => 'car', 'Ca_19238_v3' => 'car', 'Ca_19373_v3' => 'car', 'Ca_21079_v3' => 'car', 'CBR_g54016' => 'cbr', 'CBR_g54018' => 'cbr', 'CBR_g54020' => 'cbr', 'Cc01_g09780' => 'ccan', 'Cc01_g11680' => 'ccan', 'Cc02_g15610' => 'ccan', 'Cc05_g04350' => 'ccan', 'Cc09_g01580' => 'ccan', 'CDE01G0795' => 'cde', 'CDE02G2024' => 'cde', 'CDE02G2260' => 'cde', 'CDE02G4561' => 'cde', 'CDE05G2733' => 'cde', 'CDE05G3422' => 'cde', 'CDE06G2003' => 'cde', 'CDE08G0576' => 'cde', 'CDE09G0048' => 'cde', 'CDE11G0805' => 'cde', 'Cfa003644' => 'cfa', 'Cfa006290' => 'cfa', 'Cfa010080' => 'cfa', 'Cfa011376' => 'cfa', 'Cfa011576' => 'cfa', 'Cfa011577' => 'cfa', 'Cfa014389' => 'cfa', 'Ciclev10006044m.g' => 'ccl', 'Ciclev10006954m.g' => 'ccl', 'Ciclev10015131m.g' => 'ccl', 'Ciclev10015580m.g' => 'ccl', 'Ciclev10028359m.g' => 'ccl', 'Ciclev10028573m.g' => 'ccl', 'CiPaw.03G159300' => 'cil', 'CiPaw.04G115100' => 'cil', 'CiPaw.09G092800' => 'cil', 'CiPaw.10G071800' => 'cil', 'CiPaw.13G105800' => 'cil', 'CiPaw.13G141000' => 'cil', 'CiPaw.14G103400' => 'cil', 'ClCG01G012700' => 'cla', 'ClCG01G012720' => 'cla', 'ClCG01G021920' => 'cla', 'ClCG02G008870' => 'cla', 'ClCG02G020840' => 'cla', 'ClCG02G021930' => 'cla', 'COL.COLO4_19302' => 'col', 'COL.COLO4_25262' => 'col', 'COL.COLO4_31788' => 'col', 'Cpa.g.c34684' => 'cpa', 'Cpa.g.c36520.1' => 'cpa', 'Cpa.g.c45626' => 'cpa', 'Cpa.g.sc121.17' => 'cpa', 'Cpa.g.sc13.22' => 'cpa', 'Cpa.g.sc87.88' => 'cpa', 'Cre06.g261800' => 'cre', 'CsaV3_1G014500' => 'csa', 'CsaV3_1G014510' => 'csa', 'CsaV3_2G034880' => 'csa', 'CsaV3_6G014760' => 'csa', 'CsaV3_6G021500' => 'csa', 'CsaV3_6G048980' => 'csa', 'CSS0002511' => 'camsi', 'CSS0007556' => 'camsi', 'CSS0008532' => 'camsi', 'CSS0009709' => 'camsi', 'CSS0010486' => 'camsi', 'CSS0016768' => 'camsi', 'CSS0023512' => 'camsi', 'CSS0025341' => 'camsi', 'CSS0027999' => 'camsi', 'CSS0028944' => 'camsi', 'CSS0032292' => 'camsi', 'CSS0032464' => 'camsi', 'CSS0037153' => 'camsi', 'CSS0039256' => 'camsi', 'CSS0048392' => 'camsi', 'CSS0050458' => 'camsi', 'DCAR_004224' => 'dca', 'DCAR_006147' => 'dca', 'DCAR_006465' => 'dca', 'DCAR_008159' => 'dca', 'DCAR_012164' => 'dca', 'DCAR_019764' => 'dca', 'Dinv05418' => 'din', 'Dinv10839' => 'din', 'Dinv12521' => 'din', 'Dinv13900' => 'din', 'Dinv29426' => 'din', 'Duzib150G0263' => 'dzi', 'Duzib168G1178' => 'dzi', 'Duzib168G1924' => 'dzi', 'Duzib170G0299' => 'dzi', 'Duzib170G0813' => 'dzi', 'Duzib235G1128' => 'dzi', 'Duzib248G1060' => 'dzi', 'ECA232G1910' => 'eca', 'ECA233G4621' => 'eca', 'ECA238G1216' => 'eca', 'ECA238G1784' => 'eca', 'ECA248G1242' => 'eca', 'EL10Ac8g20071' => 'bvu', 'EL10Ac9g21086' => 'bvu', 'EL10Ac9g22407' => 'bvu', 'EL10Ac9g22412' => 'bvu', 'Eucgr.A01119' => 'egr', 'Eucgr.E04043' => 'egr', 'Eucgr.J00428' => 'egr', 'Eucgr.J00958' => 'egr', 'FAN11G3091' => 'fan', 'FAN11G3651' => 'fan', 'FAN16G2566' => 'fan', 'FAN21G3155' => 'fan', 'FAN21G3400' => 'fan', 'FAN21G3543' => 'fan', 'FAN25G0234' => 'fan', 'FAN25G1422' => 'fan', 'FAN25G3392' => 'fan', 'FvH4_3g01940' => 'fve', 'FvH4_3g29870' => 'fve', 'FvH4_3g33680' => 'fve', 'Glyma.09G004200' => 'gma', 'Glyma.11G151288' => 'gma', 'Glyma.11G189100' => 'gma', 'Glyma.12G072500' => 'gma', 'Glyma.12G085500' => 'gma', 'Glyma.12G181800' => 'gma', 'Glyma.12G193000' => 'gma', 'Glyma.13G309300' => 'gma', 'Glyma.13G319000' => 'gma', 'Glyma.17G012600' => 'gma', 'Gohir.A06G148600' => 'ghi', 'Gohir.A07G115800' => 'ghi', 'Gohir.A08G003600' => 'ghi', 'Gohir.A09G093300' => 'ghi', 'Gohir.A09G105400' => 'ghi', 'Gohir.A09G105500' => 'ghi', 'Gohir.D06G154600' => 'ghi', 'Gohir.D07G120200' => 'ghi', 'Gohir.D08G013900' => 'ghi', 'Gohir.D09G093100' => 'ghi', 'Gohir.D09G102200' => 'ghi', 'Gohir.D09G102300' => 'ghi', 'Gorai.001G129400' => 'gra', 'Gorai.004G008200' => 'gra', 'Gorai.006G109800' => 'gra', 'Gorai.006G119500' => 'gra', 'Gorai.006G121300' => 'gra', 'Gorai.010G180700' => 'gra', 'GSVIVG01012716001' => 'vvi', 'GSVIVG01025118001' => 'vvi', 'GSVIVG01030439001' => 'vvi', 'GSVIVG01031397001' => 'vvi', 'HanXRQChr01g0004201' => 'han', 'HanXRQChr02g0054941' => 'han', 'HanXRQChr05g0141811' => 'han', 'HanXRQChr07g0197751' => 'han', 'HanXRQChr11g0346691' => 'han', 'HanXRQChr13g0396971' => 'han', 'HanXRQChr14g0432951' => 'han', 'HanXRQChr14g0452001' => 'han', 'HanXRQChr15g0496681' => 'han', 'HanXRQChr17g0557491' => 'han', 'HanXRQChr17g0557501' => 'han', 'Haze_06809' => 'cav', 'Haze_12852' => 'cav', 'Haze_15850' => 'cav', 'Haze_23446' => 'cav', 'Haze_23942' => 'cav', 'Haze_23943' => 'cav', 'Hma1.2p1_0091F.1_g046450' => 'hma', 'Hma1.2p1_0128F.1_g059910' => 'hma', 'Hma1.2p1_0249F.1_g102260' => 'hma', 'Hma1.2p1_0453F.1_g156190' => 'hma', 'Hma1.2p1_0695F.1_g204380' => 'hma', 'Hma1.2p1_0749F.1_g212650' => 'hma', 'Hma1.2p1_2156F.1_g315420' => 'hma', 'Hma1.2p1_2686F.1_g326940' => 'hma', 'HPP92_006428' => 'vpl', 'HPP92_012069' => 'vpl', 'HPP92_014129' => 'vpl', 'HPP92_014133' => 'vpl', 'HPP92_017315' => 'vpl', 'HPP92_026445' => 'vpl', 'HPP92_026446' => 'vpl', 'Hund00774' => 'sun', 'Hund07682' => 'sun', 'Hund21413' => 'sun', 'Hund23462' => 'sun', 'Hund23463' => 'sun', 'Lalb_Chr03g0027911' => 'lal', 'Lalb_Chr13g0304271' => 'lal', 'Lalb_Chr19g0137471' => 'lal', 'Lalb_Chr22g0350651' => 'lal', 'Lalb_Chr24g0395151' => 'lal', 'Lj1A1231T40' => 'lonja', 'Lj1A221T48' => 'lonja', 'Lj1C924T12' => 'lonja', 'Lj2C993G6' => 'lonja', 'Lj3g0005790' => 'lja', 'Lj3g0015432' => 'lja', 'Lj3g0017722' => 'lja', 'Lj3g0018497' => 'lja', 'Lj4g0025071' => 'lja', 'Lsat_1_v5_gn_1_129680' => 'lsa', 'Lsat_1_v5_gn_2_25321' => 'lsa', 'Lsat_1_v5_gn_2_95461' => 'lsa', 'Lsat_1_v5_gn_4_159620' => 'lsa', 'Lsat_1_v5_gn_6_41301' => 'lsa', 'Lsat_1_v5_gn_6_74660' => 'lsa', 'Lsat_1_v5_gn_7_11520' => 'lsa', 'Lsat_1_v5_gn_9_67680' => 'lsa', 'Manes.04G008300' => 'mes', 'Manes.04G008400' => 'mes', 'Manes.04G026500' => 'mes', 'Manes.10G135300' => 'mes', 'Manes.11G157300' => 'mes', 'Manes.12G074000' => 'mes', 'Manes.16G006200' => 'mes', 'Manes.17G026400' => 'mes', 'Mapoly0024s0086' => 'mpo', 'Mapoly0024s0087' => 'mpo', 'Mapoly0071s0057' => 'mpo', 'Mapoly0204s0012' => 'mpo', 'MBI04_g37681_MAGBIO' => 'mbi', 'MBI05_g17779_MAGBIO' => 'mbi', 'MBI12_g31184_MAGBIO' => 'mbi', 'MBI17_g11083_MAGBIO' => 'mbi', 'MBI18_g03883_MAGBIO' => 'mbi', 'MBI18_g28940_MAGBIO' => 'mbi', 'MCO01G690' => 'mco', 'MD03G1109900' => 'mdo', 'MD03G1134800' => 'mdo', 'MD05G1348000' => 'mdo', 'MD10G1322400' => 'mdo', 'MD11G1123300' => 'mdo', 'MD11G1157600' => 'mdo', 'Medtr2g084875' => 'mtr', 'Medtr2g088130' => 'mtr', 'Medtr4g055310' => 'mtr', 'Medtr4g061070' => 'mtr', 'Medtr4g132250' => 'mtr', 'MELO3C004795.2' => 'cme', 'MELO3C004797.2' => 'cme', 'MELO3C007396.2' => 'cme', 'MELO3C019277.2' => 'cme', 'MELO3C021449.2' => 'cme', 'MELO3C025736.2' => 'cme', 'Migut.D02175' => 'egut', 'Migut.H01573' => 'egut', 'Migut.M01327' => 'egut', 'Migut.N02513' => 'egut', 'MSTRG.14638' => 'ama', 'MSTRG.18632' => 'ama', 'MSTRG.7203' => 'ama', 'Nitab4.5_0000533g0140' => 'nta', 'Nitab4.5_0000888g0150' => 'nta', 'Nitab4.5_0001453g0040' => 'nta', 'Nitab4.5_0002827g0090' => 'nta', 'Nitab4.5_0003082g0040' => 'nta', 'Nitab4.5_0007799g0040' => 'nta', 'Nitab4.5_0008983g0010' => 'nta', 'Nitab4.5_0009017g0020' => 'nta', 'Nn1g02132' => 'nnu', 'Nn1g03492' => 'nnu', 'Nn1g03493' => 'nnu', 'Nn1g03494' => 'nnu', 'Nn1g07164' => 'nnu', 'Nn1g07291' => 'nnu', 'Nn2g10655' => 'nnu', 'Nn2g11652' => 'nnu', 'Nn2g14008' => 'nnu', 'Nn3g17476' => 'nnu', 'Nn3g17477' => 'nnu', 'Nn4g22370' => 'nnu', 'Nn4g25255' => 'nnu', 'Nn5g27755' => 'nnu', 'Nn6g34260' => 'nnu', 'Nn6g35041' => 'nnu', 'Oeu005924.1' => 'oeu', 'Oeu008383.1' => 'oeu', 'Oeu014928.1' => 'oeu', 'Oeu019889.1' => 'oeu', 'Oeu022271.1' => 'oeu', 'Oeu025271.1' => 'oeu', 'Oeu036302.1' => 'oeu', 'Oeu044100.1' => 'oeu', 'Os01g0528300' => 'osa', 'Os03g0286200' => 'osa', 'Os04g0406600' => 'osa', 'Os07g0512000' => 'osa', 'Os07g0694600' => 'osa', 'Os08g0411000' => 'osa', 'Os09g0565700' => 'osa', 'Os09g0566050' => 'osa', 'Os10g0523700' => 'osa', 'Peaxi162Scf00002g00514' => 'pax', 'Peaxi162Scf00047g01817' => 'pax', 'Peaxi162Scf00114g00001' => 'pax', 'Peaxi162Scf00147g00613' => 'pax', 'Peaxi162Scf00389g00425' => 'pax', 'PGR042G1139' => 'pgr', 'PGR042G3273' => 'pgr', 'PGR102G2180' => 'pgr', 'PGR119G0234' => 'pgr', 'PGR119G0668' => 'pgr', 'PGSC0003DMG400007122' => 'stu', 'PGSC0003DMG400016478' => 'stu', 'PGSC0003DMG400025374' => 'stu', 'PGSC0003DMG400026536' => 'stu', 'Phvul.003G079600' => 'pvu', 'Phvul.005G115600' => 'pvu', 'Phvul.005G127100' => 'pvu', 'Phvul.006G149500' => 'pvu', 'Phvul.006G149600' => 'pvu', 'Phvul.011G071800' => 'pvu', 'Phvul.011G090400' => 'pvu', 'Potri.004G013400' => 'ptr', 'Potri.004G188100' => 'ptr', 'Potri.008G195500' => 'ptr', 'Potri.009G148800' => 'ptr', 'Potri.011G004700' => 'ptr', 'Pp3c17_22810' => 'ppa', 'Pp3c18_4480' => 'ppa', 'Pp3c19_13030' => 'ppa', 'Pp3c1_33620' => 'ppa', 'Pp3c2_9380' => 'ppa', 'PRCOL_00001023' => 'pco', 'Prupe.3G216300' => 'ppe', 'Prupe.4G019500' => 'ppe', 'Prupe.6G092500' => 'ppe', 'Prupe.6G119200' => 'ppe', 'Psat0s1945g0080' => 'psa', 'Psat0s4167g0040' => 'psa', 'Psat1g185800' => 'psa', 'Psat4g006440' => 'psa', 'Psat4g006480' => 'psa', 'Psat4g168120' => 'psa', 'Psat5g255680' => 'psa', 'Psat5g261760' => 'psa', 'Psat7g222120' => 'psa', 'PSO063G7252' => 'pso', 'PSO170G4778' => 'pso', 'PSO210G2249' => 'pso', 'PSO339G2411' => 'pso', 'PSO339G2457' => 'pso', 'PSO339G2854' => 'pso', 'PSO339G4288' => 'pso', 'PSO339G4615' => 'pso', 'PSO384G2796' => 'pso', 'PSO384G2940' => 'pso', 'PSO384G4227' => 'pso', 'PSO478G1425' => 'pso', 'PSO541G3863' => 'pso', 'PSO675G0507' => 'pso', 'PSO782G0338' => 'pso', 'PSO832G0644' => 'pso', 'QL01p013664' => 'qlo', 'QL01p036598' => 'qlo', 'QL05p072984' => 'qlo', 'QL08p005768' => 'qlo', 'QL08p032743' => 'qlo', 'QL93p0073_0439' => 'qlo', 'QL93p0073_0444' => 'qlo', 'RcHm_v2.0_Chr5g0002851' => 'rch', 'RcHm_v2.0_Chr5g0055201' => 'rch', 'RcHm_v2.0_Chr5g0061191' => 'rch', 'RcHm_v2.0_Chr7g0203231' => 'rch', 'Rhsim01G0208100' => 'rsi', 'Rhsim01G0208200' => 'rsi', 'Rhsim02G0106500' => 'rsi', 'Rhsim03G0107900' => 'rsi', 'Rhsim06G0163400' => 'rsi', 'Rhsim13G0105200' => 'rsi', 'Sabra04G0006300' => 'sbr', 'Sabra04G0127000' => 'sbr', 'Sabra08G0148700' => 'sbr', 'Sabra09G0117400' => 'sbr', 'SalBow1G3326' => 'sbo', 'SalBow3G3228' => 'sbo', 'SalBow6G1634' => 'sbo', 'SalBow6G3603' => 'sbo', 'SalBow6G5266' => 'sbo', 'SalBow7G2265' => 'sbo', 'SalBow8G0850' => 'sbo', 'SalBow8G2592' => 'sbo', 'Sc05g0009240' => 'sci', 'Sc12g0002300' => 'sci', 'Sc21g0000100' => 'sci', 'Sc21g0004720' => 'sci', 'Sed0002949' => 'sed', 'Sed0004114' => 'sed', 'Sed0004306' => 'sed', 'Sed0006172' => 'sed', 'Sed0008413' => 'sed', 'Sed0013809' => 'sed', 'Sed0019556' => 'sed', 'SEGI_03570' => 'sgi', 'SEGI_07859' => 'sgi', 'SEGI_15042' => 'sgi', 'SEGI_16263' => 'sgi', 'SEGI_16552' => 'sgi', 'SEGI_24331' => 'sgi', 'SEGI_27316' => 'sgi', 'SEGI_29521' => 'sgi', 'SEGI_41342' => 'sgi', 'SGA_v2.0_scaffold27G11617' => 'sas', 'SGA_v2.0_scaffold316G48428' => 'sas', 'SGA_v2.0_scaffold49G18261' => 'sas', 'SGA_v2.0_scaffold7G03831' => 'sas', 'SGA_v2.0_scaffold93G28359' => 'sas', 'SHI02210' => 'shi', 'SHI06028' => 'shi', 'SHI06321' => 'shi', 'SMO111G0012' => 'smo', 'SMO228G0080' => 'smo', 'SMO356G0756' => 'smo', 'Solyc02g080620.3' => 'sly', 'Solyc06g074530.1' => 'sly', 'Solyc11g066890.1' => 'sly', 'Solyc11g072520.3' => 'sly', 'Sopen02g025330' => 'spe', 'Sopen06g031000' => 'spe', 'Sopen09g008240' => 'spe', 'Sopen09g025210' => 'spe', 'Sopen11g026600' => 'spe', 'Sopen11g030170' => 'spe', 'Sp1g10420' => 'spa', 'Sp3g06570' => 'spa', 'Sp4g10660' => 'spa', 'Sp5g16460' => 'spa', 'Sp6g22710' => 'spa', 'TAR365G0112' => 'tar', 'TAR369G0717' => 'tar', 'TAR374G0976' => 'tar', 'TAR623G1128' => 'tar', 'TAR626G1937' => 'tar', 'TAR627G0123' => 'tar', 'TAR628G0305' => 'tar', 'TAR636G1176' => 'tar', 'TAR636G2442' => 'tar', 'THA.LOC104800556' => 'tha', 'THA.LOC104809501' => 'tha', 'THA.LOC104815126' => 'tha', 'THA.LOC104815732' => 'tha', 'THA.LOC104823528' => 'tha', 'Thecc.02G365600' => 'tca', 'Thecc.06G222300' => 'tca', 'Thecc.09G261800' => 'tca', 'Thecc.09G291400' => 'tca', 'Thhalv10003028m.g' => 'esa', 'Thhalv10007886m.g' => 'esa', 'Thhalv10016085m.g' => 'esa', 'Thhalv10016681m.g' => 'esa', 'Thhalv10020951m.g' => 'esa', 'TPR.G15598' => 'tpr', 'TPR.G29305' => 'tpr', 'TPR.G32395' => 'tpr', 'TPR.G36998' => 'tpr', 'TPR.G4227' => 'tpr', 'TWI18G1433' => 'twi', 'TWI31G0755' => 'twi', 'TWI38G0912' => 'twi', 'TWI75G1097' => 'twi', 'TWI75G1619' => 'twi', 'TWI79G1336' => 'twi', 'unitig_0.g943' => 'ugi', 'unitig_0.g944' => 'ugi', 'unitig_22.g6646' => 'ugi', 'unitig_37.g12681' => 'ugi', 'unitig_8.g3290' => 'ugi', 'vmacro03278' => 'vma', 'vmacro12197' => 'vma', 'vmacro14478' => 'vma', 'vmacro15787' => 'vma', 'vmacro15789' => 'vma', 'vmacro15790' => 'vma', 'vmacro15806' => 'vma', 'vmacro22907' => 'vma', 'vmacro22908' => 'vma', 'vmacro22909' => 'vma', 'vmacro23108' => 'vma', 'VMungo0540G0540' => 'vmu', 'VMungo0540G2468' => 'vmu', 'VMungo1080G0390' => 'vmu', 'VMungo1080G1165' => 'vmu', 'VMungo1127G0170' => 'vmu', 'VMungo1127G2099' => 'vmu', 'VMungo1215G3013' => 'vmu', 'Zm00001eb013110' => 'zma', 'Zm00001eb084260' => 'zma', 'Zm00001eb096110' => 'zma', 'Zm00001eb217510' => 'zma', 'Zm00001eb322550' => 'zma', 'Zm00001eb390770' => 'zma', 'Zm00001eb397170' => 'zma', 'Zm00001eb404610' => 'zma', 'Zm00001eb421790' => 'zma' ) $gf_id = 'HOM05D000911' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000911' ) $data_identifier = 'HOM05D000911' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 16, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 5, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 6, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 8, 'nnu' => (int) 16, 'oeu' => (int) 8, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 5, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 16, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421790' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000911', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27780' => 'bna', 'A03p35380' => 'bna', 'A04p21160' => 'bna', 'A05p40570' => 'bna', 'A06p26900' => 'bna', 'A08p33230' => 'bna', 'A09p65960' => 'bna', 'A10p18290' => 'bna', 'Aa31LG1G12990' => 'aar', 'Aa31LG1G2980' => 'aar', 'Aa31LG4G14320' => 'aar', 'Aa31LG7G11800' => 'aar', 'Aa31sc36G50' => 'aar', 'Aa31sc36G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3721' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5459' => 'aag', 'Actinidia03028' => 'ach', 'Actinidia03753' => 'ach', 'Actinidia04187' => 'ach', 'Actinidia05509' => 'ach', 'Actinidia24180' => 'ach', 'Actinidia26906' => 'ach', 'Actinidia37097' => 'ach', 'Actinidia38249' => 'ach', 'Ah.01g003470' => 'amhyb', 'Ah.01g004580' => 'amhyb', 'Ah.01g014850' => 'amhyb', 'Ah.01g016830' => 'amhyb', 'Ah.14g088000' => 'amhyb', 'AL1G22980' => 'aly', 'AL3G18990' => 'aly', 'AL4G22440' => 'aly', 'AL4G33180' => 'aly', 'AL5G22920' => 'aly', 'AL6G33660' => 'aly', 'AL8G20720' => 'aly', 'Aqoxy1G00935' => 'aox', 'Aqoxy1G02094' => 'aox', 'Aqoxy2G01239' => 'aox', 'Aqoxy4G01870' => 'aox', 'Aqoxy7G00450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.36ZVTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71EM27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5D6C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH3WRE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3NCM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RIM768' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YB5YRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z36GDV' => 'arhy', 'AT1G08250' => 'ath', 'AT1G11790' => 'ath', 'AT2G27820' => 'ath', 'AT3G07630' => 'ath', 'AT3G44720' => 'ath', 'AT5G22630' => 'ath', 'ATR0693G304' => 'atr', 'ATR0794G109' => 'atr', 'ATR0820G120' => 'atr', 'ATR1159G064' => 'atr', 'Atru.chr10.2239' => 'acertr', 'Atru.chr3.3371' => 'acertr', 'Atru.chr6.3202' => 'acertr', 'AUR62006499' => 'cqu', 'AUR62012718' => 'cqu', 'AUR62021938' => 'cqu', 'AUR62023932' => 'cqu', 'AUR62025034' => 'cqu', 'AUR62025035' => 'cqu', 'AUR62038307' => 'cqu', 'AUR62043466' => 'cqu', 'BcaB02g10748' => 'bca', 'BcaB03g13231' => 'bca', 'BcaB03g14689' => 'bca', 'BcaB05g22716' => 'bca', 'BcaB06g28172' => 'bca', 'BcaB08g36413' => 'bca', 'BcaC01g02186' => 'bca', 'BcaC01g04272' => 'bca', 'BcaC02g08080' => 'bca', 'BcaC02g08227' => 'bca', 'BcaC03g13901' => 'bca', 'BcaC04g19593' => 'bca', 'BcaC04g20874' => 'bca', 'BcaC05g29557' => 'bca', 'BcaC06g35505' => 'bca', 'BcaC07g41954' => 'bca', 'BcaC07g41955' => 'bca', 'BcaC07g41956' => 'bca', 'BcaC07g42519' => 'bca', 'BcaC07g42520' => 'bca', 'BcaC07g42523' => 'bca', 'BcaC07g42524' => 'bca', 'BcaC07g42525' => 'bca', 'BcaC08g47480' => 'bca', 'BcaC08g47481' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00530' => 'bna', 'BolC2t07178H' => 'bol', 'BolC3t16567H' => 'bol', 'BolC4t27234H' => 'bol', 'BolC5t29728H' => 'bol', 'BolC5t34622H' => 'bol', 'BolC6t40321H' => 'bol', 'BolC7t42028H' => 'bol', 'BolC8t49125H' => 'bol', 'BolC8t52538H' => 'bol', 'BolC8t52539H' => 'bol', 'BolC9t56681H' => 'bol', 'BolC9t58266H' => 'bol', 'BolSC21t60294H' => 'bol', 'BraA02t05670Z' => 'bra', 'BraA03t12716Z' => 'bra', 'BraA04t17685Z' => 'bra', 'BraA05t22788Z' => 'bra', 'BraA06t24032Z' => 'bra', 'BraA06t25625Z' => 'bra', 'BraA07t27930Z' => 'bra', 'BraA08t35242Z' => 'bra', 'BraA09t38609Z' => 'bra', 'BraA10t43905Z' => 'bra', 'C02p11060' => 'bna', 'C03p42990' => 'bna', 'C03p67310' => 'bna', 'C04p56990' => 'bna', 'C04p58660' => 'bna', 'C05p09890' => 'bna', 'C05p59680' => 'bna', 'C06p19830' => 'bna', 'C06p53040' => 'bna', 'C07p15230' => 'bna', 'C08p50070' => 'bna', 'C08p50090' => 'bna', 'C09p38330' => 'bna', 'C09p53940' => 'bna', 'CAN.G1014.1' => 'can', 'CAN.G644.30' => 'can', 'CAN.G84.47' => 'can', 'CAN.G919.8' => 'can', 'CANSAT54G0113' => 'cansat', 'CANSAT54G1286' => 'cansat', 'CANSAT64G1020' => 'cansat', 'CARHR008080' => 'chi', 'CARHR008090' => 'chi', 'CARHR012130' => 'chi', 'CARHR038390' => 'chi', 'CARHR082330' => 'chi', 'CARHR120520' => 'chi', 'CARHR151470' => 'chi', 'CARHR190950' => 'chi', 'Carub.0001s0760' => 'cru', 'Carub.0001s1146' => 'cru', 'Carub.0003s0721' => 'cru', 'Carub.0004s0858' => 'cru', 'Carub.0005s1040' => 'cru', 'Carub.0006s2035' => 'cru', 'Carub.0015s0005' => 'cru', 'Ca_01607_v3' => 'car', 'Ca_01677_v3' => 'car', 'Ca_06087_v3' => 'car', 'Ca_19238_v3' => 'car', 'Ca_19373_v3' => 'car', 'Ca_21079_v3' => 'car', 'CBR_g54016' => 'cbr', 'CBR_g54018' => 'cbr', 'CBR_g54020' => 'cbr', 'Cc01_g09780' => 'ccan', 'Cc01_g11680' => 'ccan', 'Cc02_g15610' => 'ccan', 'Cc05_g04350' => 'ccan', 'Cc09_g01580' => 'ccan', 'CDE01G0795' => 'cde', 'CDE02G2024' => 'cde', 'CDE02G2260' => 'cde', 'CDE02G4561' => 'cde', 'CDE05G2733' => 'cde', 'CDE05G3422' => 'cde', 'CDE06G2003' => 'cde', 'CDE08G0576' => 'cde', 'CDE09G0048' => 'cde', 'CDE11G0805' => 'cde', 'Cfa003644' => 'cfa', 'Cfa006290' => 'cfa', 'Cfa010080' => 'cfa', 'Cfa011376' => 'cfa', 'Cfa011576' => 'cfa', 'Cfa011577' => 'cfa', 'Cfa014389' => 'cfa', 'Ciclev10006044m.g' => 'ccl', 'Ciclev10006954m.g' => 'ccl', 'Ciclev10015131m.g' => 'ccl', 'Ciclev10015580m.g' => 'ccl', 'Ciclev10028359m.g' => 'ccl', 'Ciclev10028573m.g' => 'ccl', 'CiPaw.03G159300' => 'cil', 'CiPaw.04G115100' => 'cil', 'CiPaw.09G092800' => 'cil', 'CiPaw.10G071800' => 'cil', 'CiPaw.13G105800' => 'cil', 'CiPaw.13G141000' => 'cil', 'CiPaw.14G103400' => 'cil', 'ClCG01G012700' => 'cla', 'ClCG01G012720' => 'cla', 'ClCG01G021920' => 'cla', 'ClCG02G008870' => 'cla', 'ClCG02G020840' => 'cla', 'ClCG02G021930' => 'cla', 'COL.COLO4_19302' => 'col', 'COL.COLO4_25262' => 'col', 'COL.COLO4_31788' => 'col', 'Cpa.g.c34684' => 'cpa', 'Cpa.g.c36520.1' => 'cpa', 'Cpa.g.c45626' => 'cpa', 'Cpa.g.sc121.17' => 'cpa', 'Cpa.g.sc13.22' => 'cpa', 'Cpa.g.sc87.88' => 'cpa', 'Cre06.g261800' => 'cre', 'CsaV3_1G014500' => 'csa', 'CsaV3_1G014510' => 'csa', 'CsaV3_2G034880' => 'csa', 'CsaV3_6G014760' => 'csa', 'CsaV3_6G021500' => 'csa', 'CsaV3_6G048980' => 'csa', 'CSS0002511' => 'camsi', 'CSS0007556' => 'camsi', 'CSS0008532' => 'camsi', 'CSS0009709' => 'camsi', 'CSS0010486' => 'camsi', 'CSS0016768' => 'camsi', 'CSS0023512' => 'camsi', 'CSS0025341' => 'camsi', 'CSS0027999' => 'camsi', 'CSS0028944' => 'camsi', 'CSS0032292' => 'camsi', 'CSS0032464' => 'camsi', 'CSS0037153' => 'camsi', 'CSS0039256' => 'camsi', 'CSS0048392' => 'camsi', 'CSS0050458' => 'camsi', 'DCAR_004224' => 'dca', 'DCAR_006147' => 'dca', 'DCAR_006465' => 'dca', 'DCAR_008159' => 'dca', 'DCAR_012164' => 'dca', 'DCAR_019764' => 'dca', 'Dinv05418' => 'din', 'Dinv10839' => 'din', 'Dinv12521' => 'din', 'Dinv13900' => 'din', 'Dinv29426' => 'din', 'Duzib150G0263' => 'dzi', 'Duzib168G1178' => 'dzi', 'Duzib168G1924' => 'dzi', 'Duzib170G0299' => 'dzi', 'Duzib170G0813' => 'dzi', 'Duzib235G1128' => 'dzi', 'Duzib248G1060' => 'dzi', 'ECA232G1910' => 'eca', 'ECA233G4621' => 'eca', 'ECA238G1216' => 'eca', 'ECA238G1784' => 'eca', 'ECA248G1242' => 'eca', 'EL10Ac8g20071' => 'bvu', 'EL10Ac9g21086' => 'bvu', 'EL10Ac9g22407' => 'bvu', 'EL10Ac9g22412' => 'bvu', 'Eucgr.A01119' => 'egr', 'Eucgr.E04043' => 'egr', 'Eucgr.J00428' => 'egr', 'Eucgr.J00958' => 'egr', 'FAN11G3091' => 'fan', 'FAN11G3651' => 'fan', 'FAN16G2566' => 'fan', 'FAN21G3155' => 'fan', 'FAN21G3400' => 'fan', 'FAN21G3543' => 'fan', 'FAN25G0234' => 'fan', 'FAN25G1422' => 'fan', 'FAN25G3392' => 'fan', 'FvH4_3g01940' => 'fve', 'FvH4_3g29870' => 'fve', 'FvH4_3g33680' => 'fve', 'Glyma.09G004200' => 'gma', 'Glyma.11G151288' => 'gma', 'Glyma.11G189100' => 'gma', 'Glyma.12G072500' => 'gma', 'Glyma.12G085500' => 'gma', 'Glyma.12G181800' => 'gma', 'Glyma.12G193000' => 'gma', 'Glyma.13G309300' => 'gma', 'Glyma.13G319000' => 'gma', 'Glyma.17G012600' => 'gma', 'Gohir.A06G148600' => 'ghi', 'Gohir.A07G115800' => 'ghi', 'Gohir.A08G003600' => 'ghi', 'Gohir.A09G093300' => 'ghi', 'Gohir.A09G105400' => 'ghi', 'Gohir.A09G105500' => 'ghi', 'Gohir.D06G154600' => 'ghi', 'Gohir.D07G120200' => 'ghi', 'Gohir.D08G013900' => 'ghi', 'Gohir.D09G093100' => 'ghi', 'Gohir.D09G102200' => 'ghi', 'Gohir.D09G102300' => 'ghi', 'Gorai.001G129400' => 'gra', 'Gorai.004G008200' => 'gra', 'Gorai.006G109800' => 'gra', 'Gorai.006G119500' => 'gra', 'Gorai.006G121300' => 'gra', 'Gorai.010G180700' => 'gra', 'GSVIVG01012716001' => 'vvi', 'GSVIVG01025118001' => 'vvi', 'GSVIVG01030439001' => 'vvi', 'GSVIVG01031397001' => 'vvi', 'HanXRQChr01g0004201' => 'han', 'HanXRQChr02g0054941' => 'han', 'HanXRQChr05g0141811' => 'han', 'HanXRQChr07g0197751' => 'han', 'HanXRQChr11g0346691' => 'han', 'HanXRQChr13g0396971' => 'han', 'HanXRQChr14g0432951' => 'han', 'HanXRQChr14g0452001' => 'han', 'HanXRQChr15g0496681' => 'han', 'HanXRQChr17g0557491' => 'han', 'HanXRQChr17g0557501' => 'han', 'Haze_06809' => 'cav', 'Haze_12852' => 'cav', 'Haze_15850' => 'cav', 'Haze_23446' => 'cav', 'Haze_23942' => 'cav', 'Haze_23943' => 'cav', 'Hma1.2p1_0091F.1_g046450' => 'hma', 'Hma1.2p1_0128F.1_g059910' => 'hma', 'Hma1.2p1_0249F.1_g102260' => 'hma', 'Hma1.2p1_0453F.1_g156190' => 'hma', 'Hma1.2p1_0695F.1_g204380' => 'hma', 'Hma1.2p1_0749F.1_g212650' => 'hma', 'Hma1.2p1_2156F.1_g315420' => 'hma', 'Hma1.2p1_2686F.1_g326940' => 'hma', 'HPP92_006428' => 'vpl', 'HPP92_012069' => 'vpl', 'HPP92_014129' => 'vpl', 'HPP92_014133' => 'vpl', 'HPP92_017315' => 'vpl', 'HPP92_026445' => 'vpl', 'HPP92_026446' => 'vpl', 'Hund00774' => 'sun', 'Hund07682' => 'sun', 'Hund21413' => 'sun', 'Hund23462' => 'sun', 'Hund23463' => 'sun', 'Lalb_Chr03g0027911' => 'lal', 'Lalb_Chr13g0304271' => 'lal', 'Lalb_Chr19g0137471' => 'lal', 'Lalb_Chr22g0350651' => 'lal', 'Lalb_Chr24g0395151' => 'lal', 'Lj1A1231T40' => 'lonja', 'Lj1A221T48' => 'lonja', 'Lj1C924T12' => 'lonja', 'Lj2C993G6' => 'lonja', 'Lj3g0005790' => 'lja', 'Lj3g0015432' => 'lja', 'Lj3g0017722' => 'lja', 'Lj3g0018497' => 'lja', 'Lj4g0025071' => 'lja', 'Lsat_1_v5_gn_1_129680' => 'lsa', 'Lsat_1_v5_gn_2_25321' => 'lsa', 'Lsat_1_v5_gn_2_95461' => 'lsa', 'Lsat_1_v5_gn_4_159620' => 'lsa', 'Lsat_1_v5_gn_6_41301' => 'lsa', 'Lsat_1_v5_gn_6_74660' => 'lsa', 'Lsat_1_v5_gn_7_11520' => 'lsa', 'Lsat_1_v5_gn_9_67680' => 'lsa', 'Manes.04G008300' => 'mes', 'Manes.04G008400' => 'mes', 'Manes.04G026500' => 'mes', 'Manes.10G135300' => 'mes', 'Manes.11G157300' => 'mes', 'Manes.12G074000' => 'mes', 'Manes.16G006200' => 'mes', 'Manes.17G026400' => 'mes', 'Mapoly0024s0086' => 'mpo', 'Mapoly0024s0087' => 'mpo', 'Mapoly0071s0057' => 'mpo', 'Mapoly0204s0012' => 'mpo', 'MBI04_g37681_MAGBIO' => 'mbi', 'MBI05_g17779_MAGBIO' => 'mbi', 'MBI12_g31184_MAGBIO' => 'mbi', 'MBI17_g11083_MAGBIO' => 'mbi', 'MBI18_g03883_MAGBIO' => 'mbi', 'MBI18_g28940_MAGBIO' => 'mbi', 'MCO01G690' => 'mco', 'MD03G1109900' => 'mdo', 'MD03G1134800' => 'mdo', 'MD05G1348000' => 'mdo', 'MD10G1322400' => 'mdo', 'MD11G1123300' => 'mdo', 'MD11G1157600' => 'mdo', 'Medtr2g084875' => 'mtr', 'Medtr2g088130' => 'mtr', 'Medtr4g055310' => 'mtr', 'Medtr4g061070' => 'mtr', 'Medtr4g132250' => 'mtr', 'MELO3C004795.2' => 'cme', 'MELO3C004797.2' => 'cme', 'MELO3C007396.2' => 'cme', 'MELO3C019277.2' => 'cme', 'MELO3C021449.2' => 'cme', 'MELO3C025736.2' => 'cme', 'Migut.D02175' => 'egut', 'Migut.H01573' => 'egut', 'Migut.M01327' => 'egut', 'Migut.N02513' => 'egut', 'MSTRG.14638' => 'ama', 'MSTRG.18632' => 'ama', 'MSTRG.7203' => 'ama', 'Nitab4.5_0000533g0140' => 'nta', 'Nitab4.5_0000888g0150' => 'nta', 'Nitab4.5_0001453g0040' => 'nta', 'Nitab4.5_0002827g0090' => 'nta', 'Nitab4.5_0003082g0040' => 'nta', 'Nitab4.5_0007799g0040' => 'nta', 'Nitab4.5_0008983g0010' => 'nta', 'Nitab4.5_0009017g0020' => 'nta', 'Nn1g02132' => 'nnu', 'Nn1g03492' => 'nnu', 'Nn1g03493' => 'nnu', 'Nn1g03494' => 'nnu', 'Nn1g07164' => 'nnu', 'Nn1g07291' => 'nnu', 'Nn2g10655' => 'nnu', 'Nn2g11652' => 'nnu', 'Nn2g14008' => 'nnu', 'Nn3g17476' => 'nnu', 'Nn3g17477' => 'nnu', 'Nn4g22370' => 'nnu', 'Nn4g25255' => 'nnu', 'Nn5g27755' => 'nnu', 'Nn6g34260' => 'nnu', 'Nn6g35041' => 'nnu', 'Oeu005924.1' => 'oeu', 'Oeu008383.1' => 'oeu', 'Oeu014928.1' => 'oeu', 'Oeu019889.1' => 'oeu', 'Oeu022271.1' => 'oeu', 'Oeu025271.1' => 'oeu', 'Oeu036302.1' => 'oeu', 'Oeu044100.1' => 'oeu', 'Os01g0528300' => 'osa', 'Os03g0286200' => 'osa', 'Os04g0406600' => 'osa', 'Os07g0512000' => 'osa', 'Os07g0694600' => 'osa', 'Os08g0411000' => 'osa', 'Os09g0565700' => 'osa', 'Os09g0566050' => 'osa', 'Os10g0523700' => 'osa', 'Peaxi162Scf00002g00514' => 'pax', 'Peaxi162Scf00047g01817' => 'pax', 'Peaxi162Scf00114g00001' => 'pax', 'Peaxi162Scf00147g00613' => 'pax', 'Peaxi162Scf00389g00425' => 'pax', 'PGR042G1139' => 'pgr', 'PGR042G3273' => 'pgr', 'PGR102G2180' => 'pgr', 'PGR119G0234' => 'pgr', 'PGR119G0668' => 'pgr', 'PGSC0003DMG400007122' => 'stu', 'PGSC0003DMG400016478' => 'stu', 'PGSC0003DMG400025374' => 'stu', 'PGSC0003DMG400026536' => 'stu', 'Phvul.003G079600' => 'pvu', 'Phvul.005G115600' => 'pvu', 'Phvul.005G127100' => 'pvu', 'Phvul.006G149500' => 'pvu', 'Phvul.006G149600' => 'pvu', 'Phvul.011G071800' => 'pvu', 'Phvul.011G090400' => 'pvu', 'Potri.004G013400' => 'ptr', 'Potri.004G188100' => 'ptr', 'Potri.008G195500' => 'ptr', 'Potri.009G148800' => 'ptr', 'Potri.011G004700' => 'ptr', 'Pp3c17_22810' => 'ppa', 'Pp3c18_4480' => 'ppa', 'Pp3c19_13030' => 'ppa', 'Pp3c1_33620' => 'ppa', 'Pp3c2_9380' => 'ppa', 'PRCOL_00001023' => 'pco', 'Prupe.3G216300' => 'ppe', 'Prupe.4G019500' => 'ppe', 'Prupe.6G092500' => 'ppe', 'Prupe.6G119200' => 'ppe', 'Psat0s1945g0080' => 'psa', 'Psat0s4167g0040' => 'psa', 'Psat1g185800' => 'psa', 'Psat4g006440' => 'psa', 'Psat4g006480' => 'psa', 'Psat4g168120' => 'psa', 'Psat5g255680' => 'psa', 'Psat5g261760' => 'psa', 'Psat7g222120' => 'psa', 'PSO063G7252' => 'pso', 'PSO170G4778' => 'pso', 'PSO210G2249' => 'pso', 'PSO339G2411' => 'pso', 'PSO339G2457' => 'pso', 'PSO339G2854' => 'pso', 'PSO339G4288' => 'pso', 'PSO339G4615' => 'pso', 'PSO384G2796' => 'pso', 'PSO384G2940' => 'pso', 'PSO384G4227' => 'pso', 'PSO478G1425' => 'pso', 'PSO541G3863' => 'pso', 'PSO675G0507' => 'pso', 'PSO782G0338' => 'pso', 'PSO832G0644' => 'pso', 'QL01p013664' => 'qlo', 'QL01p036598' => 'qlo', 'QL05p072984' => 'qlo', 'QL08p005768' => 'qlo', 'QL08p032743' => 'qlo', 'QL93p0073_0439' => 'qlo', 'QL93p0073_0444' => 'qlo', 'RcHm_v2.0_Chr5g0002851' => 'rch', 'RcHm_v2.0_Chr5g0055201' => 'rch', 'RcHm_v2.0_Chr5g0061191' => 'rch', 'RcHm_v2.0_Chr7g0203231' => 'rch', 'Rhsim01G0208100' => 'rsi', 'Rhsim01G0208200' => 'rsi', 'Rhsim02G0106500' => 'rsi', 'Rhsim03G0107900' => 'rsi', 'Rhsim06G0163400' => 'rsi', 'Rhsim13G0105200' => 'rsi', 'Sabra04G0006300' => 'sbr', 'Sabra04G0127000' => 'sbr', 'Sabra08G0148700' => 'sbr', 'Sabra09G0117400' => 'sbr', 'SalBow1G3326' => 'sbo', 'SalBow3G3228' => 'sbo', 'SalBow6G1634' => 'sbo', 'SalBow6G3603' => 'sbo', 'SalBow6G5266' => 'sbo', 'SalBow7G2265' => 'sbo', 'SalBow8G0850' => 'sbo', 'SalBow8G2592' => 'sbo', 'Sc05g0009240' => 'sci', 'Sc12g0002300' => 'sci', 'Sc21g0000100' => 'sci', 'Sc21g0004720' => 'sci', 'Sed0002949' => 'sed', 'Sed0004114' => 'sed', 'Sed0004306' => 'sed', 'Sed0006172' => 'sed', 'Sed0008413' => 'sed', 'Sed0013809' => 'sed', 'Sed0019556' => 'sed', 'SEGI_03570' => 'sgi', 'SEGI_07859' => 'sgi', 'SEGI_15042' => 'sgi', 'SEGI_16263' => 'sgi', 'SEGI_16552' => 'sgi', 'SEGI_24331' => 'sgi', 'SEGI_27316' => 'sgi', 'SEGI_29521' => 'sgi', 'SEGI_41342' => 'sgi', 'SGA_v2.0_scaffold27G11617' => 'sas', 'SGA_v2.0_scaffold316G48428' => 'sas', 'SGA_v2.0_scaffold49G18261' => 'sas', 'SGA_v2.0_scaffold7G03831' => 'sas', 'SGA_v2.0_scaffold93G28359' => 'sas', 'SHI02210' => 'shi', 'SHI06028' => 'shi', 'SHI06321' => 'shi', 'SMO111G0012' => 'smo', 'SMO228G0080' => 'smo', 'SMO356G0756' => 'smo', 'Solyc02g080620.3' => 'sly', 'Solyc06g074530.1' => 'sly', 'Solyc11g066890.1' => 'sly', 'Solyc11g072520.3' => 'sly', 'Sopen02g025330' => 'spe', 'Sopen06g031000' => 'spe', 'Sopen09g008240' => 'spe', 'Sopen09g025210' => 'spe', 'Sopen11g026600' => 'spe', 'Sopen11g030170' => 'spe', 'Sp1g10420' => 'spa', 'Sp3g06570' => 'spa', 'Sp4g10660' => 'spa', 'Sp5g16460' => 'spa', 'Sp6g22710' => 'spa', 'TAR365G0112' => 'tar', 'TAR369G0717' => 'tar', 'TAR374G0976' => 'tar', 'TAR623G1128' => 'tar', 'TAR626G1937' => 'tar', 'TAR627G0123' => 'tar', 'TAR628G0305' => 'tar', 'TAR636G1176' => 'tar', 'TAR636G2442' => 'tar', 'THA.LOC104800556' => 'tha', 'THA.LOC104809501' => 'tha', 'THA.LOC104815126' => 'tha', 'THA.LOC104815732' => 'tha', 'THA.LOC104823528' => 'tha', 'Thecc.02G365600' => 'tca', 'Thecc.06G222300' => 'tca', 'Thecc.09G261800' => 'tca', 'Thecc.09G291400' => 'tca', 'Thhalv10003028m.g' => 'esa', 'Thhalv10007886m.g' => 'esa', 'Thhalv10016085m.g' => 'esa', 'Thhalv10016681m.g' => 'esa', 'Thhalv10020951m.g' => 'esa', 'TPR.G15598' => 'tpr', 'TPR.G29305' => 'tpr', 'TPR.G32395' => 'tpr', 'TPR.G36998' => 'tpr', 'TPR.G4227' => 'tpr', 'TWI18G1433' => 'twi', 'TWI31G0755' => 'twi', 'TWI38G0912' => 'twi', 'TWI75G1097' => 'twi', 'TWI75G1619' => 'twi', 'TWI79G1336' => 'twi', 'unitig_0.g943' => 'ugi', 'unitig_0.g944' => 'ugi', 'unitig_22.g6646' => 'ugi', 'unitig_37.g12681' => 'ugi', 'unitig_8.g3290' => 'ugi', 'vmacro03278' => 'vma', 'vmacro12197' => 'vma', 'vmacro14478' => 'vma', 'vmacro15787' => 'vma', 'vmacro15789' => 'vma', 'vmacro15790' => 'vma', 'vmacro15806' => 'vma', 'vmacro22907' => 'vma', 'vmacro22908' => 'vma', 'vmacro22909' => 'vma', 'vmacro23108' => 'vma', 'VMungo0540G0540' => 'vmu', 'VMungo0540G2468' => 'vmu', 'VMungo1080G0390' => 'vmu', 'VMungo1080G1165' => 'vmu', 'VMungo1127G0170' => 'vmu', 'VMungo1127G2099' => 'vmu', 'VMungo1215G3013' => 'vmu', 'Zm00001eb013110' => 'zma', 'Zm00001eb084260' => 'zma', 'Zm00001eb096110' => 'zma', 'Zm00001eb217510' => 'zma', 'Zm00001eb322550' => 'zma', 'Zm00001eb390770' => 'zma', 'Zm00001eb397170' => 'zma', 'Zm00001eb404610' => 'zma', 'Zm00001eb421790' => 'zma' ), 'gf_id' => 'HOM05D000911', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000911' ), 'data_identifier' => 'HOM05D000911', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000911', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27780' => 'bna', 'A03p35380' => 'bna', 'A04p21160' => 'bna', 'A05p40570' => 'bna', 'A06p26900' => 'bna', 'A08p33230' => 'bna', 'A09p65960' => 'bna', 'A10p18290' => 'bna', 'Aa31LG1G12990' => 'aar', 'Aa31LG1G2980' => 'aar', 'Aa31LG4G14320' => 'aar', 'Aa31LG7G11800' => 'aar', 'Aa31sc36G50' => 'aar', 'Aa31sc36G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3721' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5459' => 'aag', 'Actinidia03028' => 'ach', 'Actinidia03753' => 'ach', 'Actinidia04187' => 'ach', 'Actinidia05509' => 'ach', 'Actinidia24180' => 'ach', 'Actinidia26906' => 'ach', 'Actinidia37097' => 'ach', 'Actinidia38249' => 'ach', 'Ah.01g003470' => 'amhyb', 'Ah.01g004580' => 'amhyb', 'Ah.01g014850' => 'amhyb', 'Ah.01g016830' => 'amhyb', 'Ah.14g088000' => 'amhyb', 'AL1G22980' => 'aly', 'AL3G18990' => 'aly', 'AL4G22440' => 'aly', 'AL4G33180' => 'aly', 'AL5G22920' => 'aly', 'AL6G33660' => 'aly', 'AL8G20720' => 'aly', 'Aqoxy1G00935' => 'aox', 'Aqoxy1G02094' => 'aox', 'Aqoxy2G01239' => 'aox', 'Aqoxy4G01870' => 'aox', 'Aqoxy7G00450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.36ZVTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71EM27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5D6C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH3WRE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3NCM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RIM768' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YB5YRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z36GDV' => 'arhy', 'AT1G08250' => 'ath', 'AT1G11790' => 'ath', 'AT2G27820' => 'ath', 'AT3G07630' => 'ath', 'AT3G44720' => 'ath', 'AT5G22630' => 'ath', 'ATR0693G304' => 'atr', 'ATR0794G109' => 'atr', 'ATR0820G120' => 'atr', 'ATR1159G064' => 'atr', 'Atru.chr10.2239' => 'acertr', 'Atru.chr3.3371' => 'acertr', 'Atru.chr6.3202' => 'acertr', 'AUR62006499' => 'cqu', 'AUR62012718' => 'cqu', 'AUR62021938' => 'cqu', 'AUR62023932' => 'cqu', 'AUR62025034' => 'cqu', 'AUR62025035' => 'cqu', 'AUR62038307' => 'cqu', 'AUR62043466' => 'cqu', 'BcaB02g10748' => 'bca', 'BcaB03g13231' => 'bca', 'BcaB03g14689' => 'bca', 'BcaB05g22716' => 'bca', 'BcaB06g28172' => 'bca', 'BcaB08g36413' => 'bca', 'BcaC01g02186' => 'bca', 'BcaC01g04272' => 'bca', 'BcaC02g08080' => 'bca', 'BcaC02g08227' => 'bca', 'BcaC03g13901' => 'bca', 'BcaC04g19593' => 'bca', 'BcaC04g20874' => 'bca', 'BcaC05g29557' => 'bca', 'BcaC06g35505' => 'bca', 'BcaC07g41954' => 'bca', 'BcaC07g41955' => 'bca', 'BcaC07g41956' => 'bca', 'BcaC07g42519' => 'bca', 'BcaC07g42520' => 'bca', 'BcaC07g42523' => 'bca', 'BcaC07g42524' => 'bca', 'BcaC07g42525' => 'bca', 'BcaC08g47480' => 'bca', 'BcaC08g47481' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00530' => 'bna', 'BolC2t07178H' => 'bol', 'BolC3t16567H' => 'bol', 'BolC4t27234H' => 'bol', 'BolC5t29728H' => 'bol', 'BolC5t34622H' => 'bol', 'BolC6t40321H' => 'bol', 'BolC7t42028H' => 'bol', 'BolC8t49125H' => 'bol', 'BolC8t52538H' => 'bol', 'BolC8t52539H' => 'bol', 'BolC9t56681H' => 'bol', 'BolC9t58266H' => 'bol', 'BolSC21t60294H' => 'bol', 'BraA02t05670Z' => 'bra', 'BraA03t12716Z' => 'bra', 'BraA04t17685Z' => 'bra', 'BraA05t22788Z' => 'bra', 'BraA06t24032Z' => 'bra', 'BraA06t25625Z' => 'bra', 'BraA07t27930Z' => 'bra', 'BraA08t35242Z' => 'bra', 'BraA09t38609Z' => 'bra', 'BraA10t43905Z' => 'bra', 'C02p11060' => 'bna', 'C03p42990' => 'bna', 'C03p67310' => 'bna', 'C04p56990' => 'bna', 'C04p58660' => 'bna', 'C05p09890' => 'bna', 'C05p59680' => 'bna', 'C06p19830' => 'bna', 'C06p53040' => 'bna', 'C07p15230' => 'bna', 'C08p50070' => 'bna', 'C08p50090' => 'bna', 'C09p38330' => 'bna', 'C09p53940' => 'bna', 'CAN.G1014.1' => 'can', 'CAN.G644.30' => 'can', 'CAN.G84.47' => 'can', 'CAN.G919.8' => 'can', 'CANSAT54G0113' => 'cansat', 'CANSAT54G1286' => 'cansat', 'CANSAT64G1020' => 'cansat', 'CARHR008080' => 'chi', 'CARHR008090' => 'chi', 'CARHR012130' => 'chi', 'CARHR038390' => 'chi', 'CARHR082330' => 'chi', 'CARHR120520' => 'chi', 'CARHR151470' => 'chi', 'CARHR190950' => 'chi', 'Carub.0001s0760' => 'cru', 'Carub.0001s1146' => 'cru', 'Carub.0003s0721' => 'cru', 'Carub.0004s0858' => 'cru', 'Carub.0005s1040' => 'cru', 'Carub.0006s2035' => 'cru', 'Carub.0015s0005' => 'cru', 'Ca_01607_v3' => 'car', 'Ca_01677_v3' => 'car', 'Ca_06087_v3' => 'car', 'Ca_19238_v3' => 'car', 'Ca_19373_v3' => 'car', 'Ca_21079_v3' => 'car', 'CBR_g54016' => 'cbr', 'CBR_g54018' => 'cbr', 'CBR_g54020' => 'cbr', 'Cc01_g09780' => 'ccan', 'Cc01_g11680' => 'ccan', 'Cc02_g15610' => 'ccan', 'Cc05_g04350' => 'ccan', 'Cc09_g01580' => 'ccan', 'CDE01G0795' => 'cde', 'CDE02G2024' => 'cde', 'CDE02G2260' => 'cde', 'CDE02G4561' => 'cde', 'CDE05G2733' => 'cde', 'CDE05G3422' => 'cde', 'CDE06G2003' => 'cde', 'CDE08G0576' => 'cde', 'CDE09G0048' => 'cde', 'CDE11G0805' => 'cde', 'Cfa003644' => 'cfa', 'Cfa006290' => 'cfa', 'Cfa010080' => 'cfa', 'Cfa011376' => 'cfa', 'Cfa011576' => 'cfa', 'Cfa011577' => 'cfa', 'Cfa014389' => 'cfa', 'Ciclev10006044m.g' => 'ccl', 'Ciclev10006954m.g' => 'ccl', 'Ciclev10015131m.g' => 'ccl', 'Ciclev10015580m.g' => 'ccl', 'Ciclev10028359m.g' => 'ccl', 'Ciclev10028573m.g' => 'ccl', 'CiPaw.03G159300' => 'cil', 'CiPaw.04G115100' => 'cil', 'CiPaw.09G092800' => 'cil', 'CiPaw.10G071800' => 'cil', 'CiPaw.13G105800' => 'cil', 'CiPaw.13G141000' => 'cil', 'CiPaw.14G103400' => 'cil', 'ClCG01G012700' => 'cla', 'ClCG01G012720' => 'cla', 'ClCG01G021920' => 'cla', 'ClCG02G008870' => 'cla', 'ClCG02G020840' => 'cla', 'ClCG02G021930' => 'cla', 'COL.COLO4_19302' => 'col', 'COL.COLO4_25262' => 'col', 'COL.COLO4_31788' => 'col', 'Cpa.g.c34684' => 'cpa', 'Cpa.g.c36520.1' => 'cpa', 'Cpa.g.c45626' => 'cpa', 'Cpa.g.sc121.17' => 'cpa', 'Cpa.g.sc13.22' => 'cpa', 'Cpa.g.sc87.88' => 'cpa', 'Cre06.g261800' => 'cre', 'CsaV3_1G014500' => 'csa', 'CsaV3_1G014510' => 'csa', 'CsaV3_2G034880' => 'csa', 'CsaV3_6G014760' => 'csa', 'CsaV3_6G021500' => 'csa', 'CsaV3_6G048980' => 'csa', 'CSS0002511' => 'camsi', 'CSS0007556' => 'camsi', 'CSS0008532' => 'camsi', 'CSS0009709' => 'camsi', 'CSS0010486' => 'camsi', 'CSS0016768' => 'camsi', 'CSS0023512' => 'camsi', 'CSS0025341' => 'camsi', 'CSS0027999' => 'camsi', 'CSS0028944' => 'camsi', 'CSS0032292' => 'camsi', 'CSS0032464' => 'camsi', 'CSS0037153' => 'camsi', 'CSS0039256' => 'camsi', 'CSS0048392' => 'camsi', 'CSS0050458' => 'camsi', 'DCAR_004224' => 'dca', 'DCAR_006147' => 'dca', 'DCAR_006465' => 'dca', 'DCAR_008159' => 'dca', 'DCAR_012164' => 'dca', 'DCAR_019764' => 'dca', 'Dinv05418' => 'din', 'Dinv10839' => 'din', 'Dinv12521' => 'din', 'Dinv13900' => 'din', 'Dinv29426' => 'din', 'Duzib150G0263' => 'dzi', 'Duzib168G1178' => 'dzi', 'Duzib168G1924' => 'dzi', 'Duzib170G0299' => 'dzi', 'Duzib170G0813' => 'dzi', 'Duzib235G1128' => 'dzi', 'Duzib248G1060' => 'dzi', 'ECA232G1910' => 'eca', 'ECA233G4621' => 'eca', 'ECA238G1216' => 'eca', 'ECA238G1784' => 'eca', 'ECA248G1242' => 'eca', 'EL10Ac8g20071' => 'bvu', 'EL10Ac9g21086' => 'bvu', 'EL10Ac9g22407' => 'bvu', 'EL10Ac9g22412' => 'bvu', 'Eucgr.A01119' => 'egr', 'Eucgr.E04043' => 'egr', 'Eucgr.J00428' => 'egr', 'Eucgr.J00958' => 'egr', 'FAN11G3091' => 'fan', 'FAN11G3651' => 'fan', 'FAN16G2566' => 'fan', 'FAN21G3155' => 'fan', 'FAN21G3400' => 'fan', 'FAN21G3543' => 'fan', 'FAN25G0234' => 'fan', 'FAN25G1422' => 'fan', 'FAN25G3392' => 'fan', 'FvH4_3g01940' => 'fve', 'FvH4_3g29870' => 'fve', 'FvH4_3g33680' => 'fve', 'Glyma.09G004200' => 'gma', 'Glyma.11G151288' => 'gma', 'Glyma.11G189100' => 'gma', 'Glyma.12G072500' => 'gma', 'Glyma.12G085500' => 'gma', 'Glyma.12G181800' => 'gma', 'Glyma.12G193000' => 'gma', 'Glyma.13G309300' => 'gma', 'Glyma.13G319000' => 'gma', 'Glyma.17G012600' => 'gma', 'Gohir.A06G148600' => 'ghi', 'Gohir.A07G115800' => 'ghi', 'Gohir.A08G003600' => 'ghi', 'Gohir.A09G093300' => 'ghi', 'Gohir.A09G105400' => 'ghi', 'Gohir.A09G105500' => 'ghi', 'Gohir.D06G154600' => 'ghi', 'Gohir.D07G120200' => 'ghi', 'Gohir.D08G013900' => 'ghi', 'Gohir.D09G093100' => 'ghi', 'Gohir.D09G102200' => 'ghi', 'Gohir.D09G102300' => 'ghi', 'Gorai.001G129400' => 'gra', 'Gorai.004G008200' => 'gra', 'Gorai.006G109800' => 'gra', 'Gorai.006G119500' => 'gra', 'Gorai.006G121300' => 'gra', 'Gorai.010G180700' => 'gra', 'GSVIVG01012716001' => 'vvi', 'GSVIVG01025118001' => 'vvi', 'GSVIVG01030439001' => 'vvi', 'GSVIVG01031397001' => 'vvi', 'HanXRQChr01g0004201' => 'han', 'HanXRQChr02g0054941' => 'han', 'HanXRQChr05g0141811' => 'han', 'HanXRQChr07g0197751' => 'han', 'HanXRQChr11g0346691' => 'han', 'HanXRQChr13g0396971' => 'han', 'HanXRQChr14g0432951' => 'han', 'HanXRQChr14g0452001' => 'han', 'HanXRQChr15g0496681' => 'han', 'HanXRQChr17g0557491' => 'han', 'HanXRQChr17g0557501' => 'han', 'Haze_06809' => 'cav', 'Haze_12852' => 'cav', 'Haze_15850' => 'cav', 'Haze_23446' => 'cav', 'Haze_23942' => 'cav', 'Haze_23943' => 'cav', 'Hma1.2p1_0091F.1_g046450' => 'hma', 'Hma1.2p1_0128F.1_g059910' => 'hma', 'Hma1.2p1_0249F.1_g102260' => 'hma', 'Hma1.2p1_0453F.1_g156190' => 'hma', 'Hma1.2p1_0695F.1_g204380' => 'hma', 'Hma1.2p1_0749F.1_g212650' => 'hma', 'Hma1.2p1_2156F.1_g315420' => 'hma', 'Hma1.2p1_2686F.1_g326940' => 'hma', 'HPP92_006428' => 'vpl', 'HPP92_012069' => 'vpl', 'HPP92_014129' => 'vpl', 'HPP92_014133' => 'vpl', 'HPP92_017315' => 'vpl', 'HPP92_026445' => 'vpl', 'HPP92_026446' => 'vpl', 'Hund00774' => 'sun', 'Hund07682' => 'sun', 'Hund21413' => 'sun', 'Hund23462' => 'sun', 'Hund23463' => 'sun', 'Lalb_Chr03g0027911' => 'lal', 'Lalb_Chr13g0304271' => 'lal', 'Lalb_Chr19g0137471' => 'lal', 'Lalb_Chr22g0350651' => 'lal', 'Lalb_Chr24g0395151' => 'lal', 'Lj1A1231T40' => 'lonja', 'Lj1A221T48' => 'lonja', 'Lj1C924T12' => 'lonja', 'Lj2C993G6' => 'lonja', 'Lj3g0005790' => 'lja', 'Lj3g0015432' => 'lja', 'Lj3g0017722' => 'lja', 'Lj3g0018497' => 'lja', 'Lj4g0025071' => 'lja', 'Lsat_1_v5_gn_1_129680' => 'lsa', 'Lsat_1_v5_gn_2_25321' => 'lsa', 'Lsat_1_v5_gn_2_95461' => 'lsa', 'Lsat_1_v5_gn_4_159620' => 'lsa', 'Lsat_1_v5_gn_6_41301' => 'lsa', 'Lsat_1_v5_gn_6_74660' => 'lsa', 'Lsat_1_v5_gn_7_11520' => 'lsa', 'Lsat_1_v5_gn_9_67680' => 'lsa', 'Manes.04G008300' => 'mes', 'Manes.04G008400' => 'mes', 'Manes.04G026500' => 'mes', 'Manes.10G135300' => 'mes', 'Manes.11G157300' => 'mes', 'Manes.12G074000' => 'mes', 'Manes.16G006200' => 'mes', 'Manes.17G026400' => 'mes', 'Mapoly0024s0086' => 'mpo', 'Mapoly0024s0087' => 'mpo', 'Mapoly0071s0057' => 'mpo', 'Mapoly0204s0012' => 'mpo', 'MBI04_g37681_MAGBIO' => 'mbi', 'MBI05_g17779_MAGBIO' => 'mbi', 'MBI12_g31184_MAGBIO' => 'mbi', 'MBI17_g11083_MAGBIO' => 'mbi', 'MBI18_g03883_MAGBIO' => 'mbi', 'MBI18_g28940_MAGBIO' => 'mbi', 'MCO01G690' => 'mco', 'MD03G1109900' => 'mdo', 'MD03G1134800' => 'mdo', 'MD05G1348000' => 'mdo', 'MD10G1322400' => 'mdo', 'MD11G1123300' => 'mdo', 'MD11G1157600' => 'mdo', 'Medtr2g084875' => 'mtr', 'Medtr2g088130' => 'mtr', 'Medtr4g055310' => 'mtr', 'Medtr4g061070' => 'mtr', 'Medtr4g132250' => 'mtr', 'MELO3C004795.2' => 'cme', 'MELO3C004797.2' => 'cme', 'MELO3C007396.2' => 'cme', 'MELO3C019277.2' => 'cme', 'MELO3C021449.2' => 'cme', 'MELO3C025736.2' => 'cme', 'Migut.D02175' => 'egut', 'Migut.H01573' => 'egut', 'Migut.M01327' => 'egut', 'Migut.N02513' => 'egut', 'MSTRG.14638' => 'ama', 'MSTRG.18632' => 'ama', 'MSTRG.7203' => 'ama', 'Nitab4.5_0000533g0140' => 'nta', 'Nitab4.5_0000888g0150' => 'nta', 'Nitab4.5_0001453g0040' => 'nta', 'Nitab4.5_0002827g0090' => 'nta', 'Nitab4.5_0003082g0040' => 'nta', 'Nitab4.5_0007799g0040' => 'nta', 'Nitab4.5_0008983g0010' => 'nta', 'Nitab4.5_0009017g0020' => 'nta', 'Nn1g02132' => 'nnu', 'Nn1g03492' => 'nnu', 'Nn1g03493' => 'nnu', 'Nn1g03494' => 'nnu', 'Nn1g07164' => 'nnu', 'Nn1g07291' => 'nnu', 'Nn2g10655' => 'nnu', 'Nn2g11652' => 'nnu', 'Nn2g14008' => 'nnu', 'Nn3g17476' => 'nnu', 'Nn3g17477' => 'nnu', 'Nn4g22370' => 'nnu', 'Nn4g25255' => 'nnu', 'Nn5g27755' => 'nnu', 'Nn6g34260' => 'nnu', 'Nn6g35041' => 'nnu', 'Oeu005924.1' => 'oeu', 'Oeu008383.1' => 'oeu', 'Oeu014928.1' => 'oeu', 'Oeu019889.1' => 'oeu', 'Oeu022271.1' => 'oeu', 'Oeu025271.1' => 'oeu', 'Oeu036302.1' => 'oeu', 'Oeu044100.1' => 'oeu', 'Os01g0528300' => 'osa', 'Os03g0286200' => 'osa', 'Os04g0406600' => 'osa', 'Os07g0512000' => 'osa', 'Os07g0694600' => 'osa', 'Os08g0411000' => 'osa', 'Os09g0565700' => 'osa', 'Os09g0566050' => 'osa', 'Os10g0523700' => 'osa', 'Peaxi162Scf00002g00514' => 'pax', 'Peaxi162Scf00047g01817' => 'pax', 'Peaxi162Scf00114g00001' => 'pax', 'Peaxi162Scf00147g00613' => 'pax', 'Peaxi162Scf00389g00425' => 'pax', 'PGR042G1139' => 'pgr', 'PGR042G3273' => 'pgr', 'PGR102G2180' => 'pgr', 'PGR119G0234' => 'pgr', 'PGR119G0668' => 'pgr', 'PGSC0003DMG400007122' => 'stu', 'PGSC0003DMG400016478' => 'stu', 'PGSC0003DMG400025374' => 'stu', 'PGSC0003DMG400026536' => 'stu', 'Phvul.003G079600' => 'pvu', 'Phvul.005G115600' => 'pvu', 'Phvul.005G127100' => 'pvu', 'Phvul.006G149500' => 'pvu', 'Phvul.006G149600' => 'pvu', 'Phvul.011G071800' => 'pvu', 'Phvul.011G090400' => 'pvu', 'Potri.004G013400' => 'ptr', 'Potri.004G188100' => 'ptr', 'Potri.008G195500' => 'ptr', 'Potri.009G148800' => 'ptr', 'Potri.011G004700' => 'ptr', 'Pp3c17_22810' => 'ppa', 'Pp3c18_4480' => 'ppa', 'Pp3c19_13030' => 'ppa', 'Pp3c1_33620' => 'ppa', 'Pp3c2_9380' => 'ppa', 'PRCOL_00001023' => 'pco', 'Prupe.3G216300' => 'ppe', 'Prupe.4G019500' => 'ppe', 'Prupe.6G092500' => 'ppe', 'Prupe.6G119200' => 'ppe', 'Psat0s1945g0080' => 'psa', 'Psat0s4167g0040' => 'psa', 'Psat1g185800' => 'psa', 'Psat4g006440' => 'psa', 'Psat4g006480' => 'psa', 'Psat4g168120' => 'psa', 'Psat5g255680' => 'psa', 'Psat5g261760' => 'psa', 'Psat7g222120' => 'psa', 'PSO063G7252' => 'pso', 'PSO170G4778' => 'pso', 'PSO210G2249' => 'pso', 'PSO339G2411' => 'pso', 'PSO339G2457' => 'pso', 'PSO339G2854' => 'pso', 'PSO339G4288' => 'pso', 'PSO339G4615' => 'pso', 'PSO384G2796' => 'pso', 'PSO384G2940' => 'pso', 'PSO384G4227' => 'pso', 'PSO478G1425' => 'pso', 'PSO541G3863' => 'pso', 'PSO675G0507' => 'pso', 'PSO782G0338' => 'pso', 'PSO832G0644' => 'pso', 'QL01p013664' => 'qlo', 'QL01p036598' => 'qlo', 'QL05p072984' => 'qlo', 'QL08p005768' => 'qlo', 'QL08p032743' => 'qlo', 'QL93p0073_0439' => 'qlo', 'QL93p0073_0444' => 'qlo', 'RcHm_v2.0_Chr5g0002851' => 'rch', 'RcHm_v2.0_Chr5g0055201' => 'rch', 'RcHm_v2.0_Chr5g0061191' => 'rch', 'RcHm_v2.0_Chr7g0203231' => 'rch', 'Rhsim01G0208100' => 'rsi', 'Rhsim01G0208200' => 'rsi', 'Rhsim02G0106500' => 'rsi', 'Rhsim03G0107900' => 'rsi', 'Rhsim06G0163400' => 'rsi', 'Rhsim13G0105200' => 'rsi', 'Sabra04G0006300' => 'sbr', 'Sabra04G0127000' => 'sbr', 'Sabra08G0148700' => 'sbr', 'Sabra09G0117400' => 'sbr', 'SalBow1G3326' => 'sbo', 'SalBow3G3228' => 'sbo', 'SalBow6G1634' => 'sbo', 'SalBow6G3603' => 'sbo', 'SalBow6G5266' => 'sbo', 'SalBow7G2265' => 'sbo', 'SalBow8G0850' => 'sbo', 'SalBow8G2592' => 'sbo', 'Sc05g0009240' => 'sci', 'Sc12g0002300' => 'sci', 'Sc21g0000100' => 'sci', 'Sc21g0004720' => 'sci', 'Sed0002949' => 'sed', 'Sed0004114' => 'sed', 'Sed0004306' => 'sed', 'Sed0006172' => 'sed', 'Sed0008413' => 'sed', 'Sed0013809' => 'sed', 'Sed0019556' => 'sed', 'SEGI_03570' => 'sgi', 'SEGI_07859' => 'sgi', 'SEGI_15042' => 'sgi', 'SEGI_16263' => 'sgi', 'SEGI_16552' => 'sgi', 'SEGI_24331' => 'sgi', 'SEGI_27316' => 'sgi', 'SEGI_29521' => 'sgi', 'SEGI_41342' => 'sgi', 'SGA_v2.0_scaffold27G11617' => 'sas', 'SGA_v2.0_scaffold316G48428' => 'sas', 'SGA_v2.0_scaffold49G18261' => 'sas', 'SGA_v2.0_scaffold7G03831' => 'sas', 'SGA_v2.0_scaffold93G28359' => 'sas', 'SHI02210' => 'shi', 'SHI06028' => 'shi', 'SHI06321' => 'shi', 'SMO111G0012' => 'smo', 'SMO228G0080' => 'smo', 'SMO356G0756' => 'smo', 'Solyc02g080620.3' => 'sly', 'Solyc06g074530.1' => 'sly', 'Solyc11g066890.1' => 'sly', 'Solyc11g072520.3' => 'sly', 'Sopen02g025330' => 'spe', 'Sopen06g031000' => 'spe', 'Sopen09g008240' => 'spe', 'Sopen09g025210' => 'spe', 'Sopen11g026600' => 'spe', 'Sopen11g030170' => 'spe', 'Sp1g10420' => 'spa', 'Sp3g06570' => 'spa', 'Sp4g10660' => 'spa', 'Sp5g16460' => 'spa', 'Sp6g22710' => 'spa', 'TAR365G0112' => 'tar', 'TAR369G0717' => 'tar', 'TAR374G0976' => 'tar', 'TAR623G1128' => 'tar', 'TAR626G1937' => 'tar', 'TAR627G0123' => 'tar', 'TAR628G0305' => 'tar', 'TAR636G1176' => 'tar', 'TAR636G2442' => 'tar', 'THA.LOC104800556' => 'tha', 'THA.LOC104809501' => 'tha', 'THA.LOC104815126' => 'tha', 'THA.LOC104815732' => 'tha', 'THA.LOC104823528' => 'tha', 'Thecc.02G365600' => 'tca', 'Thecc.06G222300' => 'tca', 'Thecc.09G261800' => 'tca', 'Thecc.09G291400' => 'tca', 'Thhalv10003028m.g' => 'esa', 'Thhalv10007886m.g' => 'esa', 'Thhalv10016085m.g' => 'esa', 'Thhalv10016681m.g' => 'esa', 'Thhalv10020951m.g' => 'esa', 'TPR.G15598' => 'tpr', 'TPR.G29305' => 'tpr', 'TPR.G32395' => 'tpr', 'TPR.G36998' => 'tpr', 'TPR.G4227' => 'tpr', 'TWI18G1433' => 'twi', 'TWI31G0755' => 'twi', 'TWI38G0912' => 'twi', 'TWI75G1097' => 'twi', 'TWI75G1619' => 'twi', 'TWI79G1336' => 'twi', 'unitig_0.g943' => 'ugi', 'unitig_0.g944' => 'ugi', 'unitig_22.g6646' => 'ugi', 'unitig_37.g12681' => 'ugi', 'unitig_8.g3290' => 'ugi', 'vmacro03278' => 'vma', 'vmacro12197' => 'vma', 'vmacro14478' => 'vma', 'vmacro15787' => 'vma', 'vmacro15789' => 'vma', 'vmacro15790' => 'vma', 'vmacro15806' => 'vma', 'vmacro22907' => 'vma', 'vmacro22908' => 'vma', 'vmacro22909' => 'vma', 'vmacro23108' => 'vma', 'VMungo0540G0540' => 'vmu', 'VMungo0540G2468' => 'vmu', 'VMungo1080G0390' => 'vmu', 'VMungo1080G1165' => 'vmu', 'VMungo1127G0170' => 'vmu', 'VMungo1127G2099' => 'vmu', 'VMungo1215G3013' => 'vmu', 'Zm00001eb013110' => 'zma', 'Zm00001eb084260' => 'zma', 'Zm00001eb096110' => 'zma', 'Zm00001eb217510' => 'zma', 'Zm00001eb322550' => 'zma', 'Zm00001eb390770' => 'zma', 'Zm00001eb397170' => 'zma', 'Zm00001eb404610' => 'zma', 'Zm00001eb421790' => 'zma' ) $gf_id = 'HOM05D000911' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000911' ) $data_identifier = 'HOM05D000911' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 16, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 5, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 6, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 8, 'nnu' => (int) 16, 'oeu' => (int) 8, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 5, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 16, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421790' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000911', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27780' => 'bna', 'A03p35380' => 'bna', 'A04p21160' => 'bna', 'A05p40570' => 'bna', 'A06p26900' => 'bna', 'A08p33230' => 'bna', 'A09p65960' => 'bna', 'A10p18290' => 'bna', 'Aa31LG1G12990' => 'aar', 'Aa31LG1G2980' => 'aar', 'Aa31LG4G14320' => 'aar', 'Aa31LG7G11800' => 'aar', 'Aa31sc36G50' => 'aar', 'Aa31sc36G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3721' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5459' => 'aag', 'Actinidia03028' => 'ach', 'Actinidia03753' => 'ach', 'Actinidia04187' => 'ach', 'Actinidia05509' => 'ach', 'Actinidia24180' => 'ach', 'Actinidia26906' => 'ach', 'Actinidia37097' => 'ach', 'Actinidia38249' => 'ach', 'Ah.01g003470' => 'amhyb', 'Ah.01g004580' => 'amhyb', 'Ah.01g014850' => 'amhyb', 'Ah.01g016830' => 'amhyb', 'Ah.14g088000' => 'amhyb', 'AL1G22980' => 'aly', 'AL3G18990' => 'aly', 'AL4G22440' => 'aly', 'AL4G33180' => 'aly', 'AL5G22920' => 'aly', 'AL6G33660' => 'aly', 'AL8G20720' => 'aly', 'Aqoxy1G00935' => 'aox', 'Aqoxy1G02094' => 'aox', 'Aqoxy2G01239' => 'aox', 'Aqoxy4G01870' => 'aox', 'Aqoxy7G00450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.36ZVTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71EM27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5D6C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH3WRE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3NCM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RIM768' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YB5YRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z36GDV' => 'arhy', 'AT1G08250' => 'ath', 'AT1G11790' => 'ath', 'AT2G27820' => 'ath', 'AT3G07630' => 'ath', 'AT3G44720' => 'ath', 'AT5G22630' => 'ath', 'ATR0693G304' => 'atr', 'ATR0794G109' => 'atr', 'ATR0820G120' => 'atr', 'ATR1159G064' => 'atr', 'Atru.chr10.2239' => 'acertr', 'Atru.chr3.3371' => 'acertr', 'Atru.chr6.3202' => 'acertr', 'AUR62006499' => 'cqu', 'AUR62012718' => 'cqu', 'AUR62021938' => 'cqu', 'AUR62023932' => 'cqu', 'AUR62025034' => 'cqu', 'AUR62025035' => 'cqu', 'AUR62038307' => 'cqu', 'AUR62043466' => 'cqu', 'BcaB02g10748' => 'bca', 'BcaB03g13231' => 'bca', 'BcaB03g14689' => 'bca', 'BcaB05g22716' => 'bca', 'BcaB06g28172' => 'bca', 'BcaB08g36413' => 'bca', 'BcaC01g02186' => 'bca', 'BcaC01g04272' => 'bca', 'BcaC02g08080' => 'bca', 'BcaC02g08227' => 'bca', 'BcaC03g13901' => 'bca', 'BcaC04g19593' => 'bca', 'BcaC04g20874' => 'bca', 'BcaC05g29557' => 'bca', 'BcaC06g35505' => 'bca', 'BcaC07g41954' => 'bca', 'BcaC07g41955' => 'bca', 'BcaC07g41956' => 'bca', 'BcaC07g42519' => 'bca', 'BcaC07g42520' => 'bca', 'BcaC07g42523' => 'bca', 'BcaC07g42524' => 'bca', 'BcaC07g42525' => 'bca', 'BcaC08g47480' => 'bca', 'BcaC08g47481' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00530' => 'bna', 'BolC2t07178H' => 'bol', 'BolC3t16567H' => 'bol', 'BolC4t27234H' => 'bol', 'BolC5t29728H' => 'bol', 'BolC5t34622H' => 'bol', 'BolC6t40321H' => 'bol', 'BolC7t42028H' => 'bol', 'BolC8t49125H' => 'bol', 'BolC8t52538H' => 'bol', 'BolC8t52539H' => 'bol', 'BolC9t56681H' => 'bol', 'BolC9t58266H' => 'bol', 'BolSC21t60294H' => 'bol', 'BraA02t05670Z' => 'bra', 'BraA03t12716Z' => 'bra', 'BraA04t17685Z' => 'bra', 'BraA05t22788Z' => 'bra', 'BraA06t24032Z' => 'bra', 'BraA06t25625Z' => 'bra', 'BraA07t27930Z' => 'bra', 'BraA08t35242Z' => 'bra', 'BraA09t38609Z' => 'bra', 'BraA10t43905Z' => 'bra', 'C02p11060' => 'bna', 'C03p42990' => 'bna', 'C03p67310' => 'bna', 'C04p56990' => 'bna', 'C04p58660' => 'bna', 'C05p09890' => 'bna', 'C05p59680' => 'bna', 'C06p19830' => 'bna', 'C06p53040' => 'bna', 'C07p15230' => 'bna', 'C08p50070' => 'bna', 'C08p50090' => 'bna', 'C09p38330' => 'bna', 'C09p53940' => 'bna', 'CAN.G1014.1' => 'can', 'CAN.G644.30' => 'can', 'CAN.G84.47' => 'can', 'CAN.G919.8' => 'can', 'CANSAT54G0113' => 'cansat', 'CANSAT54G1286' => 'cansat', 'CANSAT64G1020' => 'cansat', 'CARHR008080' => 'chi', 'CARHR008090' => 'chi', 'CARHR012130' => 'chi', 'CARHR038390' => 'chi', 'CARHR082330' => 'chi', 'CARHR120520' => 'chi', 'CARHR151470' => 'chi', 'CARHR190950' => 'chi', 'Carub.0001s0760' => 'cru', 'Carub.0001s1146' => 'cru', 'Carub.0003s0721' => 'cru', 'Carub.0004s0858' => 'cru', 'Carub.0005s1040' => 'cru', 'Carub.0006s2035' => 'cru', 'Carub.0015s0005' => 'cru', 'Ca_01607_v3' => 'car', 'Ca_01677_v3' => 'car', 'Ca_06087_v3' => 'car', 'Ca_19238_v3' => 'car', 'Ca_19373_v3' => 'car', 'Ca_21079_v3' => 'car', 'CBR_g54016' => 'cbr', 'CBR_g54018' => 'cbr', 'CBR_g54020' => 'cbr', 'Cc01_g09780' => 'ccan', 'Cc01_g11680' => 'ccan', 'Cc02_g15610' => 'ccan', 'Cc05_g04350' => 'ccan', 'Cc09_g01580' => 'ccan', 'CDE01G0795' => 'cde', 'CDE02G2024' => 'cde', 'CDE02G2260' => 'cde', 'CDE02G4561' => 'cde', 'CDE05G2733' => 'cde', 'CDE05G3422' => 'cde', 'CDE06G2003' => 'cde', 'CDE08G0576' => 'cde', 'CDE09G0048' => 'cde', 'CDE11G0805' => 'cde', 'Cfa003644' => 'cfa', 'Cfa006290' => 'cfa', 'Cfa010080' => 'cfa', 'Cfa011376' => 'cfa', 'Cfa011576' => 'cfa', 'Cfa011577' => 'cfa', 'Cfa014389' => 'cfa', 'Ciclev10006044m.g' => 'ccl', 'Ciclev10006954m.g' => 'ccl', 'Ciclev10015131m.g' => 'ccl', 'Ciclev10015580m.g' => 'ccl', 'Ciclev10028359m.g' => 'ccl', 'Ciclev10028573m.g' => 'ccl', 'CiPaw.03G159300' => 'cil', 'CiPaw.04G115100' => 'cil', 'CiPaw.09G092800' => 'cil', 'CiPaw.10G071800' => 'cil', 'CiPaw.13G105800' => 'cil', 'CiPaw.13G141000' => 'cil', 'CiPaw.14G103400' => 'cil', 'ClCG01G012700' => 'cla', 'ClCG01G012720' => 'cla', 'ClCG01G021920' => 'cla', 'ClCG02G008870' => 'cla', 'ClCG02G020840' => 'cla', 'ClCG02G021930' => 'cla', 'COL.COLO4_19302' => 'col', 'COL.COLO4_25262' => 'col', 'COL.COLO4_31788' => 'col', 'Cpa.g.c34684' => 'cpa', 'Cpa.g.c36520.1' => 'cpa', 'Cpa.g.c45626' => 'cpa', 'Cpa.g.sc121.17' => 'cpa', 'Cpa.g.sc13.22' => 'cpa', 'Cpa.g.sc87.88' => 'cpa', 'Cre06.g261800' => 'cre', 'CsaV3_1G014500' => 'csa', 'CsaV3_1G014510' => 'csa', 'CsaV3_2G034880' => 'csa', 'CsaV3_6G014760' => 'csa', 'CsaV3_6G021500' => 'csa', 'CsaV3_6G048980' => 'csa', 'CSS0002511' => 'camsi', 'CSS0007556' => 'camsi', 'CSS0008532' => 'camsi', 'CSS0009709' => 'camsi', 'CSS0010486' => 'camsi', 'CSS0016768' => 'camsi', 'CSS0023512' => 'camsi', 'CSS0025341' => 'camsi', 'CSS0027999' => 'camsi', 'CSS0028944' => 'camsi', 'CSS0032292' => 'camsi', 'CSS0032464' => 'camsi', 'CSS0037153' => 'camsi', 'CSS0039256' => 'camsi', 'CSS0048392' => 'camsi', 'CSS0050458' => 'camsi', 'DCAR_004224' => 'dca', 'DCAR_006147' => 'dca', 'DCAR_006465' => 'dca', 'DCAR_008159' => 'dca', 'DCAR_012164' => 'dca', 'DCAR_019764' => 'dca', 'Dinv05418' => 'din', 'Dinv10839' => 'din', 'Dinv12521' => 'din', 'Dinv13900' => 'din', 'Dinv29426' => 'din', 'Duzib150G0263' => 'dzi', 'Duzib168G1178' => 'dzi', 'Duzib168G1924' => 'dzi', 'Duzib170G0299' => 'dzi', 'Duzib170G0813' => 'dzi', 'Duzib235G1128' => 'dzi', 'Duzib248G1060' => 'dzi', 'ECA232G1910' => 'eca', 'ECA233G4621' => 'eca', 'ECA238G1216' => 'eca', 'ECA238G1784' => 'eca', 'ECA248G1242' => 'eca', 'EL10Ac8g20071' => 'bvu', 'EL10Ac9g21086' => 'bvu', 'EL10Ac9g22407' => 'bvu', 'EL10Ac9g22412' => 'bvu', 'Eucgr.A01119' => 'egr', 'Eucgr.E04043' => 'egr', 'Eucgr.J00428' => 'egr', 'Eucgr.J00958' => 'egr', 'FAN11G3091' => 'fan', 'FAN11G3651' => 'fan', 'FAN16G2566' => 'fan', 'FAN21G3155' => 'fan', 'FAN21G3400' => 'fan', 'FAN21G3543' => 'fan', 'FAN25G0234' => 'fan', 'FAN25G1422' => 'fan', 'FAN25G3392' => 'fan', 'FvH4_3g01940' => 'fve', 'FvH4_3g29870' => 'fve', 'FvH4_3g33680' => 'fve', 'Glyma.09G004200' => 'gma', 'Glyma.11G151288' => 'gma', 'Glyma.11G189100' => 'gma', 'Glyma.12G072500' => 'gma', 'Glyma.12G085500' => 'gma', 'Glyma.12G181800' => 'gma', 'Glyma.12G193000' => 'gma', 'Glyma.13G309300' => 'gma', 'Glyma.13G319000' => 'gma', 'Glyma.17G012600' => 'gma', 'Gohir.A06G148600' => 'ghi', 'Gohir.A07G115800' => 'ghi', 'Gohir.A08G003600' => 'ghi', 'Gohir.A09G093300' => 'ghi', 'Gohir.A09G105400' => 'ghi', 'Gohir.A09G105500' => 'ghi', 'Gohir.D06G154600' => 'ghi', 'Gohir.D07G120200' => 'ghi', 'Gohir.D08G013900' => 'ghi', 'Gohir.D09G093100' => 'ghi', 'Gohir.D09G102200' => 'ghi', 'Gohir.D09G102300' => 'ghi', 'Gorai.001G129400' => 'gra', 'Gorai.004G008200' => 'gra', 'Gorai.006G109800' => 'gra', 'Gorai.006G119500' => 'gra', 'Gorai.006G121300' => 'gra', 'Gorai.010G180700' => 'gra', 'GSVIVG01012716001' => 'vvi', 'GSVIVG01025118001' => 'vvi', 'GSVIVG01030439001' => 'vvi', 'GSVIVG01031397001' => 'vvi', 'HanXRQChr01g0004201' => 'han', 'HanXRQChr02g0054941' => 'han', 'HanXRQChr05g0141811' => 'han', 'HanXRQChr07g0197751' => 'han', 'HanXRQChr11g0346691' => 'han', 'HanXRQChr13g0396971' => 'han', 'HanXRQChr14g0432951' => 'han', 'HanXRQChr14g0452001' => 'han', 'HanXRQChr15g0496681' => 'han', 'HanXRQChr17g0557491' => 'han', 'HanXRQChr17g0557501' => 'han', 'Haze_06809' => 'cav', 'Haze_12852' => 'cav', 'Haze_15850' => 'cav', 'Haze_23446' => 'cav', 'Haze_23942' => 'cav', 'Haze_23943' => 'cav', 'Hma1.2p1_0091F.1_g046450' => 'hma', 'Hma1.2p1_0128F.1_g059910' => 'hma', 'Hma1.2p1_0249F.1_g102260' => 'hma', 'Hma1.2p1_0453F.1_g156190' => 'hma', 'Hma1.2p1_0695F.1_g204380' => 'hma', 'Hma1.2p1_0749F.1_g212650' => 'hma', 'Hma1.2p1_2156F.1_g315420' => 'hma', 'Hma1.2p1_2686F.1_g326940' => 'hma', 'HPP92_006428' => 'vpl', 'HPP92_012069' => 'vpl', 'HPP92_014129' => 'vpl', 'HPP92_014133' => 'vpl', 'HPP92_017315' => 'vpl', 'HPP92_026445' => 'vpl', 'HPP92_026446' => 'vpl', 'Hund00774' => 'sun', 'Hund07682' => 'sun', 'Hund21413' => 'sun', 'Hund23462' => 'sun', 'Hund23463' => 'sun', 'Lalb_Chr03g0027911' => 'lal', 'Lalb_Chr13g0304271' => 'lal', 'Lalb_Chr19g0137471' => 'lal', 'Lalb_Chr22g0350651' => 'lal', 'Lalb_Chr24g0395151' => 'lal', 'Lj1A1231T40' => 'lonja', 'Lj1A221T48' => 'lonja', 'Lj1C924T12' => 'lonja', 'Lj2C993G6' => 'lonja', 'Lj3g0005790' => 'lja', 'Lj3g0015432' => 'lja', 'Lj3g0017722' => 'lja', 'Lj3g0018497' => 'lja', 'Lj4g0025071' => 'lja', 'Lsat_1_v5_gn_1_129680' => 'lsa', 'Lsat_1_v5_gn_2_25321' => 'lsa', 'Lsat_1_v5_gn_2_95461' => 'lsa', 'Lsat_1_v5_gn_4_159620' => 'lsa', 'Lsat_1_v5_gn_6_41301' => 'lsa', 'Lsat_1_v5_gn_6_74660' => 'lsa', 'Lsat_1_v5_gn_7_11520' => 'lsa', 'Lsat_1_v5_gn_9_67680' => 'lsa', 'Manes.04G008300' => 'mes', 'Manes.04G008400' => 'mes', 'Manes.04G026500' => 'mes', 'Manes.10G135300' => 'mes', 'Manes.11G157300' => 'mes', 'Manes.12G074000' => 'mes', 'Manes.16G006200' => 'mes', 'Manes.17G026400' => 'mes', 'Mapoly0024s0086' => 'mpo', 'Mapoly0024s0087' => 'mpo', 'Mapoly0071s0057' => 'mpo', 'Mapoly0204s0012' => 'mpo', 'MBI04_g37681_MAGBIO' => 'mbi', 'MBI05_g17779_MAGBIO' => 'mbi', 'MBI12_g31184_MAGBIO' => 'mbi', 'MBI17_g11083_MAGBIO' => 'mbi', 'MBI18_g03883_MAGBIO' => 'mbi', 'MBI18_g28940_MAGBIO' => 'mbi', 'MCO01G690' => 'mco', 'MD03G1109900' => 'mdo', 'MD03G1134800' => 'mdo', 'MD05G1348000' => 'mdo', 'MD10G1322400' => 'mdo', 'MD11G1123300' => 'mdo', 'MD11G1157600' => 'mdo', 'Medtr2g084875' => 'mtr', 'Medtr2g088130' => 'mtr', 'Medtr4g055310' => 'mtr', 'Medtr4g061070' => 'mtr', 'Medtr4g132250' => 'mtr', 'MELO3C004795.2' => 'cme', 'MELO3C004797.2' => 'cme', 'MELO3C007396.2' => 'cme', 'MELO3C019277.2' => 'cme', 'MELO3C021449.2' => 'cme', 'MELO3C025736.2' => 'cme', 'Migut.D02175' => 'egut', 'Migut.H01573' => 'egut', 'Migut.M01327' => 'egut', 'Migut.N02513' => 'egut', 'MSTRG.14638' => 'ama', 'MSTRG.18632' => 'ama', 'MSTRG.7203' => 'ama', 'Nitab4.5_0000533g0140' => 'nta', 'Nitab4.5_0000888g0150' => 'nta', 'Nitab4.5_0001453g0040' => 'nta', 'Nitab4.5_0002827g0090' => 'nta', 'Nitab4.5_0003082g0040' => 'nta', 'Nitab4.5_0007799g0040' => 'nta', 'Nitab4.5_0008983g0010' => 'nta', 'Nitab4.5_0009017g0020' => 'nta', 'Nn1g02132' => 'nnu', 'Nn1g03492' => 'nnu', 'Nn1g03493' => 'nnu', 'Nn1g03494' => 'nnu', 'Nn1g07164' => 'nnu', 'Nn1g07291' => 'nnu', 'Nn2g10655' => 'nnu', 'Nn2g11652' => 'nnu', 'Nn2g14008' => 'nnu', 'Nn3g17476' => 'nnu', 'Nn3g17477' => 'nnu', 'Nn4g22370' => 'nnu', 'Nn4g25255' => 'nnu', 'Nn5g27755' => 'nnu', 'Nn6g34260' => 'nnu', 'Nn6g35041' => 'nnu', 'Oeu005924.1' => 'oeu', 'Oeu008383.1' => 'oeu', 'Oeu014928.1' => 'oeu', 'Oeu019889.1' => 'oeu', 'Oeu022271.1' => 'oeu', 'Oeu025271.1' => 'oeu', 'Oeu036302.1' => 'oeu', 'Oeu044100.1' => 'oeu', 'Os01g0528300' => 'osa', 'Os03g0286200' => 'osa', 'Os04g0406600' => 'osa', 'Os07g0512000' => 'osa', 'Os07g0694600' => 'osa', 'Os08g0411000' => 'osa', 'Os09g0565700' => 'osa', 'Os09g0566050' => 'osa', 'Os10g0523700' => 'osa', 'Peaxi162Scf00002g00514' => 'pax', 'Peaxi162Scf00047g01817' => 'pax', 'Peaxi162Scf00114g00001' => 'pax', 'Peaxi162Scf00147g00613' => 'pax', 'Peaxi162Scf00389g00425' => 'pax', 'PGR042G1139' => 'pgr', 'PGR042G3273' => 'pgr', 'PGR102G2180' => 'pgr', 'PGR119G0234' => 'pgr', 'PGR119G0668' => 'pgr', 'PGSC0003DMG400007122' => 'stu', 'PGSC0003DMG400016478' => 'stu', 'PGSC0003DMG400025374' => 'stu', 'PGSC0003DMG400026536' => 'stu', 'Phvul.003G079600' => 'pvu', 'Phvul.005G115600' => 'pvu', 'Phvul.005G127100' => 'pvu', 'Phvul.006G149500' => 'pvu', 'Phvul.006G149600' => 'pvu', 'Phvul.011G071800' => 'pvu', 'Phvul.011G090400' => 'pvu', 'Potri.004G013400' => 'ptr', 'Potri.004G188100' => 'ptr', 'Potri.008G195500' => 'ptr', 'Potri.009G148800' => 'ptr', 'Potri.011G004700' => 'ptr', 'Pp3c17_22810' => 'ppa', 'Pp3c18_4480' => 'ppa', 'Pp3c19_13030' => 'ppa', 'Pp3c1_33620' => 'ppa', 'Pp3c2_9380' => 'ppa', 'PRCOL_00001023' => 'pco', 'Prupe.3G216300' => 'ppe', 'Prupe.4G019500' => 'ppe', 'Prupe.6G092500' => 'ppe', 'Prupe.6G119200' => 'ppe', 'Psat0s1945g0080' => 'psa', 'Psat0s4167g0040' => 'psa', 'Psat1g185800' => 'psa', 'Psat4g006440' => 'psa', 'Psat4g006480' => 'psa', 'Psat4g168120' => 'psa', 'Psat5g255680' => 'psa', 'Psat5g261760' => 'psa', 'Psat7g222120' => 'psa', 'PSO063G7252' => 'pso', 'PSO170G4778' => 'pso', 'PSO210G2249' => 'pso', 'PSO339G2411' => 'pso', 'PSO339G2457' => 'pso', 'PSO339G2854' => 'pso', 'PSO339G4288' => 'pso', 'PSO339G4615' => 'pso', 'PSO384G2796' => 'pso', 'PSO384G2940' => 'pso', 'PSO384G4227' => 'pso', 'PSO478G1425' => 'pso', 'PSO541G3863' => 'pso', 'PSO675G0507' => 'pso', 'PSO782G0338' => 'pso', 'PSO832G0644' => 'pso', 'QL01p013664' => 'qlo', 'QL01p036598' => 'qlo', 'QL05p072984' => 'qlo', 'QL08p005768' => 'qlo', 'QL08p032743' => 'qlo', 'QL93p0073_0439' => 'qlo', 'QL93p0073_0444' => 'qlo', 'RcHm_v2.0_Chr5g0002851' => 'rch', 'RcHm_v2.0_Chr5g0055201' => 'rch', 'RcHm_v2.0_Chr5g0061191' => 'rch', 'RcHm_v2.0_Chr7g0203231' => 'rch', 'Rhsim01G0208100' => 'rsi', 'Rhsim01G0208200' => 'rsi', 'Rhsim02G0106500' => 'rsi', 'Rhsim03G0107900' => 'rsi', 'Rhsim06G0163400' => 'rsi', 'Rhsim13G0105200' => 'rsi', 'Sabra04G0006300' => 'sbr', 'Sabra04G0127000' => 'sbr', 'Sabra08G0148700' => 'sbr', 'Sabra09G0117400' => 'sbr', 'SalBow1G3326' => 'sbo', 'SalBow3G3228' => 'sbo', 'SalBow6G1634' => 'sbo', 'SalBow6G3603' => 'sbo', 'SalBow6G5266' => 'sbo', 'SalBow7G2265' => 'sbo', 'SalBow8G0850' => 'sbo', 'SalBow8G2592' => 'sbo', 'Sc05g0009240' => 'sci', 'Sc12g0002300' => 'sci', 'Sc21g0000100' => 'sci', 'Sc21g0004720' => 'sci', 'Sed0002949' => 'sed', 'Sed0004114' => 'sed', 'Sed0004306' => 'sed', 'Sed0006172' => 'sed', 'Sed0008413' => 'sed', 'Sed0013809' => 'sed', 'Sed0019556' => 'sed', 'SEGI_03570' => 'sgi', 'SEGI_07859' => 'sgi', 'SEGI_15042' => 'sgi', 'SEGI_16263' => 'sgi', 'SEGI_16552' => 'sgi', 'SEGI_24331' => 'sgi', 'SEGI_27316' => 'sgi', 'SEGI_29521' => 'sgi', 'SEGI_41342' => 'sgi', 'SGA_v2.0_scaffold27G11617' => 'sas', 'SGA_v2.0_scaffold316G48428' => 'sas', 'SGA_v2.0_scaffold49G18261' => 'sas', 'SGA_v2.0_scaffold7G03831' => 'sas', 'SGA_v2.0_scaffold93G28359' => 'sas', 'SHI02210' => 'shi', 'SHI06028' => 'shi', 'SHI06321' => 'shi', 'SMO111G0012' => 'smo', 'SMO228G0080' => 'smo', 'SMO356G0756' => 'smo', 'Solyc02g080620.3' => 'sly', 'Solyc06g074530.1' => 'sly', 'Solyc11g066890.1' => 'sly', 'Solyc11g072520.3' => 'sly', 'Sopen02g025330' => 'spe', 'Sopen06g031000' => 'spe', 'Sopen09g008240' => 'spe', 'Sopen09g025210' => 'spe', 'Sopen11g026600' => 'spe', 'Sopen11g030170' => 'spe', 'Sp1g10420' => 'spa', 'Sp3g06570' => 'spa', 'Sp4g10660' => 'spa', 'Sp5g16460' => 'spa', 'Sp6g22710' => 'spa', 'TAR365G0112' => 'tar', 'TAR369G0717' => 'tar', 'TAR374G0976' => 'tar', 'TAR623G1128' => 'tar', 'TAR626G1937' => 'tar', 'TAR627G0123' => 'tar', 'TAR628G0305' => 'tar', 'TAR636G1176' => 'tar', 'TAR636G2442' => 'tar', 'THA.LOC104800556' => 'tha', 'THA.LOC104809501' => 'tha', 'THA.LOC104815126' => 'tha', 'THA.LOC104815732' => 'tha', 'THA.LOC104823528' => 'tha', 'Thecc.02G365600' => 'tca', 'Thecc.06G222300' => 'tca', 'Thecc.09G261800' => 'tca', 'Thecc.09G291400' => 'tca', 'Thhalv10003028m.g' => 'esa', 'Thhalv10007886m.g' => 'esa', 'Thhalv10016085m.g' => 'esa', 'Thhalv10016681m.g' => 'esa', 'Thhalv10020951m.g' => 'esa', 'TPR.G15598' => 'tpr', 'TPR.G29305' => 'tpr', 'TPR.G32395' => 'tpr', 'TPR.G36998' => 'tpr', 'TPR.G4227' => 'tpr', 'TWI18G1433' => 'twi', 'TWI31G0755' => 'twi', 'TWI38G0912' => 'twi', 'TWI75G1097' => 'twi', 'TWI75G1619' => 'twi', 'TWI79G1336' => 'twi', 'unitig_0.g943' => 'ugi', 'unitig_0.g944' => 'ugi', 'unitig_22.g6646' => 'ugi', 'unitig_37.g12681' => 'ugi', 'unitig_8.g3290' => 'ugi', 'vmacro03278' => 'vma', 'vmacro12197' => 'vma', 'vmacro14478' => 'vma', 'vmacro15787' => 'vma', 'vmacro15789' => 'vma', 'vmacro15790' => 'vma', 'vmacro15806' => 'vma', 'vmacro22907' => 'vma', 'vmacro22908' => 'vma', 'vmacro22909' => 'vma', 'vmacro23108' => 'vma', 'VMungo0540G0540' => 'vmu', 'VMungo0540G2468' => 'vmu', 'VMungo1080G0390' => 'vmu', 'VMungo1080G1165' => 'vmu', 'VMungo1127G0170' => 'vmu', 'VMungo1127G2099' => 'vmu', 'VMungo1215G3013' => 'vmu', 'Zm00001eb013110' => 'zma', 'Zm00001eb084260' => 'zma', 'Zm00001eb096110' => 'zma', 'Zm00001eb217510' => 'zma', 'Zm00001eb322550' => 'zma', 'Zm00001eb390770' => 'zma', 'Zm00001eb397170' => 'zma', 'Zm00001eb404610' => 'zma', 'Zm00001eb421790' => 'zma' ), 'gf_id' => 'HOM05D000911', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000911' ), 'data_identifier' => 'HOM05D000911', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000911', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27780' => 'bna', 'A03p35380' => 'bna', 'A04p21160' => 'bna', 'A05p40570' => 'bna', 'A06p26900' => 'bna', 'A08p33230' => 'bna', 'A09p65960' => 'bna', 'A10p18290' => 'bna', 'Aa31LG1G12990' => 'aar', 'Aa31LG1G2980' => 'aar', 'Aa31LG4G14320' => 'aar', 'Aa31LG7G11800' => 'aar', 'Aa31sc36G50' => 'aar', 'Aa31sc36G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3721' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5459' => 'aag', 'Actinidia03028' => 'ach', 'Actinidia03753' => 'ach', 'Actinidia04187' => 'ach', 'Actinidia05509' => 'ach', 'Actinidia24180' => 'ach', 'Actinidia26906' => 'ach', 'Actinidia37097' => 'ach', 'Actinidia38249' => 'ach', 'Ah.01g003470' => 'amhyb', 'Ah.01g004580' => 'amhyb', 'Ah.01g014850' => 'amhyb', 'Ah.01g016830' => 'amhyb', 'Ah.14g088000' => 'amhyb', 'AL1G22980' => 'aly', 'AL3G18990' => 'aly', 'AL4G22440' => 'aly', 'AL4G33180' => 'aly', 'AL5G22920' => 'aly', 'AL6G33660' => 'aly', 'AL8G20720' => 'aly', 'Aqoxy1G00935' => 'aox', 'Aqoxy1G02094' => 'aox', 'Aqoxy2G01239' => 'aox', 'Aqoxy4G01870' => 'aox', 'Aqoxy7G00450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.36ZVTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71EM27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5D6C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH3WRE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3NCM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RIM768' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YB5YRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z36GDV' => 'arhy', 'AT1G08250' => 'ath', 'AT1G11790' => 'ath', 'AT2G27820' => 'ath', 'AT3G07630' => 'ath', 'AT3G44720' => 'ath', 'AT5G22630' => 'ath', 'ATR0693G304' => 'atr', 'ATR0794G109' => 'atr', 'ATR0820G120' => 'atr', 'ATR1159G064' => 'atr', 'Atru.chr10.2239' => 'acertr', 'Atru.chr3.3371' => 'acertr', 'Atru.chr6.3202' => 'acertr', 'AUR62006499' => 'cqu', 'AUR62012718' => 'cqu', 'AUR62021938' => 'cqu', 'AUR62023932' => 'cqu', 'AUR62025034' => 'cqu', 'AUR62025035' => 'cqu', 'AUR62038307' => 'cqu', 'AUR62043466' => 'cqu', 'BcaB02g10748' => 'bca', 'BcaB03g13231' => 'bca', 'BcaB03g14689' => 'bca', 'BcaB05g22716' => 'bca', 'BcaB06g28172' => 'bca', 'BcaB08g36413' => 'bca', 'BcaC01g02186' => 'bca', 'BcaC01g04272' => 'bca', 'BcaC02g08080' => 'bca', 'BcaC02g08227' => 'bca', 'BcaC03g13901' => 'bca', 'BcaC04g19593' => 'bca', 'BcaC04g20874' => 'bca', 'BcaC05g29557' => 'bca', 'BcaC06g35505' => 'bca', 'BcaC07g41954' => 'bca', 'BcaC07g41955' => 'bca', 'BcaC07g41956' => 'bca', 'BcaC07g42519' => 'bca', 'BcaC07g42520' => 'bca', 'BcaC07g42523' => 'bca', 'BcaC07g42524' => 'bca', 'BcaC07g42525' => 'bca', 'BcaC08g47480' => 'bca', 'BcaC08g47481' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00530' => 'bna', 'BolC2t07178H' => 'bol', 'BolC3t16567H' => 'bol', 'BolC4t27234H' => 'bol', 'BolC5t29728H' => 'bol', 'BolC5t34622H' => 'bol', 'BolC6t40321H' => 'bol', 'BolC7t42028H' => 'bol', 'BolC8t49125H' => 'bol', 'BolC8t52538H' => 'bol', 'BolC8t52539H' => 'bol', 'BolC9t56681H' => 'bol', 'BolC9t58266H' => 'bol', 'BolSC21t60294H' => 'bol', 'BraA02t05670Z' => 'bra', 'BraA03t12716Z' => 'bra', 'BraA04t17685Z' => 'bra', 'BraA05t22788Z' => 'bra', 'BraA06t24032Z' => 'bra', 'BraA06t25625Z' => 'bra', 'BraA07t27930Z' => 'bra', 'BraA08t35242Z' => 'bra', 'BraA09t38609Z' => 'bra', 'BraA10t43905Z' => 'bra', 'C02p11060' => 'bna', 'C03p42990' => 'bna', 'C03p67310' => 'bna', 'C04p56990' => 'bna', 'C04p58660' => 'bna', 'C05p09890' => 'bna', 'C05p59680' => 'bna', 'C06p19830' => 'bna', 'C06p53040' => 'bna', 'C07p15230' => 'bna', 'C08p50070' => 'bna', 'C08p50090' => 'bna', 'C09p38330' => 'bna', 'C09p53940' => 'bna', 'CAN.G1014.1' => 'can', 'CAN.G644.30' => 'can', 'CAN.G84.47' => 'can', 'CAN.G919.8' => 'can', 'CANSAT54G0113' => 'cansat', 'CANSAT54G1286' => 'cansat', 'CANSAT64G1020' => 'cansat', 'CARHR008080' => 'chi', 'CARHR008090' => 'chi', 'CARHR012130' => 'chi', 'CARHR038390' => 'chi', 'CARHR082330' => 'chi', 'CARHR120520' => 'chi', 'CARHR151470' => 'chi', 'CARHR190950' => 'chi', 'Carub.0001s0760' => 'cru', 'Carub.0001s1146' => 'cru', 'Carub.0003s0721' => 'cru', 'Carub.0004s0858' => 'cru', 'Carub.0005s1040' => 'cru', 'Carub.0006s2035' => 'cru', 'Carub.0015s0005' => 'cru', 'Ca_01607_v3' => 'car', 'Ca_01677_v3' => 'car', 'Ca_06087_v3' => 'car', 'Ca_19238_v3' => 'car', 'Ca_19373_v3' => 'car', 'Ca_21079_v3' => 'car', 'CBR_g54016' => 'cbr', 'CBR_g54018' => 'cbr', 'CBR_g54020' => 'cbr', 'Cc01_g09780' => 'ccan', 'Cc01_g11680' => 'ccan', 'Cc02_g15610' => 'ccan', 'Cc05_g04350' => 'ccan', 'Cc09_g01580' => 'ccan', 'CDE01G0795' => 'cde', 'CDE02G2024' => 'cde', 'CDE02G2260' => 'cde', 'CDE02G4561' => 'cde', 'CDE05G2733' => 'cde', 'CDE05G3422' => 'cde', 'CDE06G2003' => 'cde', 'CDE08G0576' => 'cde', 'CDE09G0048' => 'cde', 'CDE11G0805' => 'cde', 'Cfa003644' => 'cfa', 'Cfa006290' => 'cfa', 'Cfa010080' => 'cfa', 'Cfa011376' => 'cfa', 'Cfa011576' => 'cfa', 'Cfa011577' => 'cfa', 'Cfa014389' => 'cfa', 'Ciclev10006044m.g' => 'ccl', 'Ciclev10006954m.g' => 'ccl', 'Ciclev10015131m.g' => 'ccl', 'Ciclev10015580m.g' => 'ccl', 'Ciclev10028359m.g' => 'ccl', 'Ciclev10028573m.g' => 'ccl', 'CiPaw.03G159300' => 'cil', 'CiPaw.04G115100' => 'cil', 'CiPaw.09G092800' => 'cil', 'CiPaw.10G071800' => 'cil', 'CiPaw.13G105800' => 'cil', 'CiPaw.13G141000' => 'cil', 'CiPaw.14G103400' => 'cil', 'ClCG01G012700' => 'cla', 'ClCG01G012720' => 'cla', 'ClCG01G021920' => 'cla', 'ClCG02G008870' => 'cla', 'ClCG02G020840' => 'cla', 'ClCG02G021930' => 'cla', 'COL.COLO4_19302' => 'col', 'COL.COLO4_25262' => 'col', 'COL.COLO4_31788' => 'col', 'Cpa.g.c34684' => 'cpa', 'Cpa.g.c36520.1' => 'cpa', 'Cpa.g.c45626' => 'cpa', 'Cpa.g.sc121.17' => 'cpa', 'Cpa.g.sc13.22' => 'cpa', 'Cpa.g.sc87.88' => 'cpa', 'Cre06.g261800' => 'cre', 'CsaV3_1G014500' => 'csa', 'CsaV3_1G014510' => 'csa', 'CsaV3_2G034880' => 'csa', 'CsaV3_6G014760' => 'csa', 'CsaV3_6G021500' => 'csa', 'CsaV3_6G048980' => 'csa', 'CSS0002511' => 'camsi', 'CSS0007556' => 'camsi', 'CSS0008532' => 'camsi', 'CSS0009709' => 'camsi', 'CSS0010486' => 'camsi', 'CSS0016768' => 'camsi', 'CSS0023512' => 'camsi', 'CSS0025341' => 'camsi', 'CSS0027999' => 'camsi', 'CSS0028944' => 'camsi', 'CSS0032292' => 'camsi', 'CSS0032464' => 'camsi', 'CSS0037153' => 'camsi', 'CSS0039256' => 'camsi', 'CSS0048392' => 'camsi', 'CSS0050458' => 'camsi', 'DCAR_004224' => 'dca', 'DCAR_006147' => 'dca', 'DCAR_006465' => 'dca', 'DCAR_008159' => 'dca', 'DCAR_012164' => 'dca', 'DCAR_019764' => 'dca', 'Dinv05418' => 'din', 'Dinv10839' => 'din', 'Dinv12521' => 'din', 'Dinv13900' => 'din', 'Dinv29426' => 'din', 'Duzib150G0263' => 'dzi', 'Duzib168G1178' => 'dzi', 'Duzib168G1924' => 'dzi', 'Duzib170G0299' => 'dzi', 'Duzib170G0813' => 'dzi', 'Duzib235G1128' => 'dzi', 'Duzib248G1060' => 'dzi', 'ECA232G1910' => 'eca', 'ECA233G4621' => 'eca', 'ECA238G1216' => 'eca', 'ECA238G1784' => 'eca', 'ECA248G1242' => 'eca', 'EL10Ac8g20071' => 'bvu', 'EL10Ac9g21086' => 'bvu', 'EL10Ac9g22407' => 'bvu', 'EL10Ac9g22412' => 'bvu', 'Eucgr.A01119' => 'egr', 'Eucgr.E04043' => 'egr', 'Eucgr.J00428' => 'egr', 'Eucgr.J00958' => 'egr', 'FAN11G3091' => 'fan', 'FAN11G3651' => 'fan', 'FAN16G2566' => 'fan', 'FAN21G3155' => 'fan', 'FAN21G3400' => 'fan', 'FAN21G3543' => 'fan', 'FAN25G0234' => 'fan', 'FAN25G1422' => 'fan', 'FAN25G3392' => 'fan', 'FvH4_3g01940' => 'fve', 'FvH4_3g29870' => 'fve', 'FvH4_3g33680' => 'fve', 'Glyma.09G004200' => 'gma', 'Glyma.11G151288' => 'gma', 'Glyma.11G189100' => 'gma', 'Glyma.12G072500' => 'gma', 'Glyma.12G085500' => 'gma', 'Glyma.12G181800' => 'gma', 'Glyma.12G193000' => 'gma', 'Glyma.13G309300' => 'gma', 'Glyma.13G319000' => 'gma', 'Glyma.17G012600' => 'gma', 'Gohir.A06G148600' => 'ghi', 'Gohir.A07G115800' => 'ghi', 'Gohir.A08G003600' => 'ghi', 'Gohir.A09G093300' => 'ghi', 'Gohir.A09G105400' => 'ghi', 'Gohir.A09G105500' => 'ghi', 'Gohir.D06G154600' => 'ghi', 'Gohir.D07G120200' => 'ghi', 'Gohir.D08G013900' => 'ghi', 'Gohir.D09G093100' => 'ghi', 'Gohir.D09G102200' => 'ghi', 'Gohir.D09G102300' => 'ghi', 'Gorai.001G129400' => 'gra', 'Gorai.004G008200' => 'gra', 'Gorai.006G109800' => 'gra', 'Gorai.006G119500' => 'gra', 'Gorai.006G121300' => 'gra', 'Gorai.010G180700' => 'gra', 'GSVIVG01012716001' => 'vvi', 'GSVIVG01025118001' => 'vvi', 'GSVIVG01030439001' => 'vvi', 'GSVIVG01031397001' => 'vvi', 'HanXRQChr01g0004201' => 'han', 'HanXRQChr02g0054941' => 'han', 'HanXRQChr05g0141811' => 'han', 'HanXRQChr07g0197751' => 'han', 'HanXRQChr11g0346691' => 'han', 'HanXRQChr13g0396971' => 'han', 'HanXRQChr14g0432951' => 'han', 'HanXRQChr14g0452001' => 'han', 'HanXRQChr15g0496681' => 'han', 'HanXRQChr17g0557491' => 'han', 'HanXRQChr17g0557501' => 'han', 'Haze_06809' => 'cav', 'Haze_12852' => 'cav', 'Haze_15850' => 'cav', 'Haze_23446' => 'cav', 'Haze_23942' => 'cav', 'Haze_23943' => 'cav', 'Hma1.2p1_0091F.1_g046450' => 'hma', 'Hma1.2p1_0128F.1_g059910' => 'hma', 'Hma1.2p1_0249F.1_g102260' => 'hma', 'Hma1.2p1_0453F.1_g156190' => 'hma', 'Hma1.2p1_0695F.1_g204380' => 'hma', 'Hma1.2p1_0749F.1_g212650' => 'hma', 'Hma1.2p1_2156F.1_g315420' => 'hma', 'Hma1.2p1_2686F.1_g326940' => 'hma', 'HPP92_006428' => 'vpl', 'HPP92_012069' => 'vpl', 'HPP92_014129' => 'vpl', 'HPP92_014133' => 'vpl', 'HPP92_017315' => 'vpl', 'HPP92_026445' => 'vpl', 'HPP92_026446' => 'vpl', 'Hund00774' => 'sun', 'Hund07682' => 'sun', 'Hund21413' => 'sun', 'Hund23462' => 'sun', 'Hund23463' => 'sun', 'Lalb_Chr03g0027911' => 'lal', 'Lalb_Chr13g0304271' => 'lal', 'Lalb_Chr19g0137471' => 'lal', 'Lalb_Chr22g0350651' => 'lal', 'Lalb_Chr24g0395151' => 'lal', 'Lj1A1231T40' => 'lonja', 'Lj1A221T48' => 'lonja', 'Lj1C924T12' => 'lonja', 'Lj2C993G6' => 'lonja', 'Lj3g0005790' => 'lja', 'Lj3g0015432' => 'lja', 'Lj3g0017722' => 'lja', 'Lj3g0018497' => 'lja', 'Lj4g0025071' => 'lja', 'Lsat_1_v5_gn_1_129680' => 'lsa', 'Lsat_1_v5_gn_2_25321' => 'lsa', 'Lsat_1_v5_gn_2_95461' => 'lsa', 'Lsat_1_v5_gn_4_159620' => 'lsa', 'Lsat_1_v5_gn_6_41301' => 'lsa', 'Lsat_1_v5_gn_6_74660' => 'lsa', 'Lsat_1_v5_gn_7_11520' => 'lsa', 'Lsat_1_v5_gn_9_67680' => 'lsa', 'Manes.04G008300' => 'mes', 'Manes.04G008400' => 'mes', 'Manes.04G026500' => 'mes', 'Manes.10G135300' => 'mes', 'Manes.11G157300' => 'mes', 'Manes.12G074000' => 'mes', 'Manes.16G006200' => 'mes', 'Manes.17G026400' => 'mes', 'Mapoly0024s0086' => 'mpo', 'Mapoly0024s0087' => 'mpo', 'Mapoly0071s0057' => 'mpo', 'Mapoly0204s0012' => 'mpo', 'MBI04_g37681_MAGBIO' => 'mbi', 'MBI05_g17779_MAGBIO' => 'mbi', 'MBI12_g31184_MAGBIO' => 'mbi', 'MBI17_g11083_MAGBIO' => 'mbi', 'MBI18_g03883_MAGBIO' => 'mbi', 'MBI18_g28940_MAGBIO' => 'mbi', 'MCO01G690' => 'mco', 'MD03G1109900' => 'mdo', 'MD03G1134800' => 'mdo', 'MD05G1348000' => 'mdo', 'MD10G1322400' => 'mdo', 'MD11G1123300' => 'mdo', 'MD11G1157600' => 'mdo', 'Medtr2g084875' => 'mtr', 'Medtr2g088130' => 'mtr', 'Medtr4g055310' => 'mtr', 'Medtr4g061070' => 'mtr', 'Medtr4g132250' => 'mtr', 'MELO3C004795.2' => 'cme', 'MELO3C004797.2' => 'cme', 'MELO3C007396.2' => 'cme', 'MELO3C019277.2' => 'cme', 'MELO3C021449.2' => 'cme', 'MELO3C025736.2' => 'cme', 'Migut.D02175' => 'egut', 'Migut.H01573' => 'egut', 'Migut.M01327' => 'egut', 'Migut.N02513' => 'egut', 'MSTRG.14638' => 'ama', 'MSTRG.18632' => 'ama', 'MSTRG.7203' => 'ama', 'Nitab4.5_0000533g0140' => 'nta', 'Nitab4.5_0000888g0150' => 'nta', 'Nitab4.5_0001453g0040' => 'nta', 'Nitab4.5_0002827g0090' => 'nta', 'Nitab4.5_0003082g0040' => 'nta', 'Nitab4.5_0007799g0040' => 'nta', 'Nitab4.5_0008983g0010' => 'nta', 'Nitab4.5_0009017g0020' => 'nta', 'Nn1g02132' => 'nnu', 'Nn1g03492' => 'nnu', 'Nn1g03493' => 'nnu', 'Nn1g03494' => 'nnu', 'Nn1g07164' => 'nnu', 'Nn1g07291' => 'nnu', 'Nn2g10655' => 'nnu', 'Nn2g11652' => 'nnu', 'Nn2g14008' => 'nnu', 'Nn3g17476' => 'nnu', 'Nn3g17477' => 'nnu', 'Nn4g22370' => 'nnu', 'Nn4g25255' => 'nnu', 'Nn5g27755' => 'nnu', 'Nn6g34260' => 'nnu', 'Nn6g35041' => 'nnu', 'Oeu005924.1' => 'oeu', 'Oeu008383.1' => 'oeu', 'Oeu014928.1' => 'oeu', 'Oeu019889.1' => 'oeu', 'Oeu022271.1' => 'oeu', 'Oeu025271.1' => 'oeu', 'Oeu036302.1' => 'oeu', 'Oeu044100.1' => 'oeu', 'Os01g0528300' => 'osa', 'Os03g0286200' => 'osa', 'Os04g0406600' => 'osa', 'Os07g0512000' => 'osa', 'Os07g0694600' => 'osa', 'Os08g0411000' => 'osa', 'Os09g0565700' => 'osa', 'Os09g0566050' => 'osa', 'Os10g0523700' => 'osa', 'Peaxi162Scf00002g00514' => 'pax', 'Peaxi162Scf00047g01817' => 'pax', 'Peaxi162Scf00114g00001' => 'pax', 'Peaxi162Scf00147g00613' => 'pax', 'Peaxi162Scf00389g00425' => 'pax', 'PGR042G1139' => 'pgr', 'PGR042G3273' => 'pgr', 'PGR102G2180' => 'pgr', 'PGR119G0234' => 'pgr', 'PGR119G0668' => 'pgr', 'PGSC0003DMG400007122' => 'stu', 'PGSC0003DMG400016478' => 'stu', 'PGSC0003DMG400025374' => 'stu', 'PGSC0003DMG400026536' => 'stu', 'Phvul.003G079600' => 'pvu', 'Phvul.005G115600' => 'pvu', 'Phvul.005G127100' => 'pvu', 'Phvul.006G149500' => 'pvu', 'Phvul.006G149600' => 'pvu', 'Phvul.011G071800' => 'pvu', 'Phvul.011G090400' => 'pvu', 'Potri.004G013400' => 'ptr', 'Potri.004G188100' => 'ptr', 'Potri.008G195500' => 'ptr', 'Potri.009G148800' => 'ptr', 'Potri.011G004700' => 'ptr', 'Pp3c17_22810' => 'ppa', 'Pp3c18_4480' => 'ppa', 'Pp3c19_13030' => 'ppa', 'Pp3c1_33620' => 'ppa', 'Pp3c2_9380' => 'ppa', 'PRCOL_00001023' => 'pco', 'Prupe.3G216300' => 'ppe', 'Prupe.4G019500' => 'ppe', 'Prupe.6G092500' => 'ppe', 'Prupe.6G119200' => 'ppe', 'Psat0s1945g0080' => 'psa', 'Psat0s4167g0040' => 'psa', 'Psat1g185800' => 'psa', 'Psat4g006440' => 'psa', 'Psat4g006480' => 'psa', 'Psat4g168120' => 'psa', 'Psat5g255680' => 'psa', 'Psat5g261760' => 'psa', 'Psat7g222120' => 'psa', 'PSO063G7252' => 'pso', 'PSO170G4778' => 'pso', 'PSO210G2249' => 'pso', 'PSO339G2411' => 'pso', 'PSO339G2457' => 'pso', 'PSO339G2854' => 'pso', 'PSO339G4288' => 'pso', 'PSO339G4615' => 'pso', 'PSO384G2796' => 'pso', 'PSO384G2940' => 'pso', 'PSO384G4227' => 'pso', 'PSO478G1425' => 'pso', 'PSO541G3863' => 'pso', 'PSO675G0507' => 'pso', 'PSO782G0338' => 'pso', 'PSO832G0644' => 'pso', 'QL01p013664' => 'qlo', 'QL01p036598' => 'qlo', 'QL05p072984' => 'qlo', 'QL08p005768' => 'qlo', 'QL08p032743' => 'qlo', 'QL93p0073_0439' => 'qlo', 'QL93p0073_0444' => 'qlo', 'RcHm_v2.0_Chr5g0002851' => 'rch', 'RcHm_v2.0_Chr5g0055201' => 'rch', 'RcHm_v2.0_Chr5g0061191' => 'rch', 'RcHm_v2.0_Chr7g0203231' => 'rch', 'Rhsim01G0208100' => 'rsi', 'Rhsim01G0208200' => 'rsi', 'Rhsim02G0106500' => 'rsi', 'Rhsim03G0107900' => 'rsi', 'Rhsim06G0163400' => 'rsi', 'Rhsim13G0105200' => 'rsi', 'Sabra04G0006300' => 'sbr', 'Sabra04G0127000' => 'sbr', 'Sabra08G0148700' => 'sbr', 'Sabra09G0117400' => 'sbr', 'SalBow1G3326' => 'sbo', 'SalBow3G3228' => 'sbo', 'SalBow6G1634' => 'sbo', 'SalBow6G3603' => 'sbo', 'SalBow6G5266' => 'sbo', 'SalBow7G2265' => 'sbo', 'SalBow8G0850' => 'sbo', 'SalBow8G2592' => 'sbo', 'Sc05g0009240' => 'sci', 'Sc12g0002300' => 'sci', 'Sc21g0000100' => 'sci', 'Sc21g0004720' => 'sci', 'Sed0002949' => 'sed', 'Sed0004114' => 'sed', 'Sed0004306' => 'sed', 'Sed0006172' => 'sed', 'Sed0008413' => 'sed', 'Sed0013809' => 'sed', 'Sed0019556' => 'sed', 'SEGI_03570' => 'sgi', 'SEGI_07859' => 'sgi', 'SEGI_15042' => 'sgi', 'SEGI_16263' => 'sgi', 'SEGI_16552' => 'sgi', 'SEGI_24331' => 'sgi', 'SEGI_27316' => 'sgi', 'SEGI_29521' => 'sgi', 'SEGI_41342' => 'sgi', 'SGA_v2.0_scaffold27G11617' => 'sas', 'SGA_v2.0_scaffold316G48428' => 'sas', 'SGA_v2.0_scaffold49G18261' => 'sas', 'SGA_v2.0_scaffold7G03831' => 'sas', 'SGA_v2.0_scaffold93G28359' => 'sas', 'SHI02210' => 'shi', 'SHI06028' => 'shi', 'SHI06321' => 'shi', 'SMO111G0012' => 'smo', 'SMO228G0080' => 'smo', 'SMO356G0756' => 'smo', 'Solyc02g080620.3' => 'sly', 'Solyc06g074530.1' => 'sly', 'Solyc11g066890.1' => 'sly', 'Solyc11g072520.3' => 'sly', 'Sopen02g025330' => 'spe', 'Sopen06g031000' => 'spe', 'Sopen09g008240' => 'spe', 'Sopen09g025210' => 'spe', 'Sopen11g026600' => 'spe', 'Sopen11g030170' => 'spe', 'Sp1g10420' => 'spa', 'Sp3g06570' => 'spa', 'Sp4g10660' => 'spa', 'Sp5g16460' => 'spa', 'Sp6g22710' => 'spa', 'TAR365G0112' => 'tar', 'TAR369G0717' => 'tar', 'TAR374G0976' => 'tar', 'TAR623G1128' => 'tar', 'TAR626G1937' => 'tar', 'TAR627G0123' => 'tar', 'TAR628G0305' => 'tar', 'TAR636G1176' => 'tar', 'TAR636G2442' => 'tar', 'THA.LOC104800556' => 'tha', 'THA.LOC104809501' => 'tha', 'THA.LOC104815126' => 'tha', 'THA.LOC104815732' => 'tha', 'THA.LOC104823528' => 'tha', 'Thecc.02G365600' => 'tca', 'Thecc.06G222300' => 'tca', 'Thecc.09G261800' => 'tca', 'Thecc.09G291400' => 'tca', 'Thhalv10003028m.g' => 'esa', 'Thhalv10007886m.g' => 'esa', 'Thhalv10016085m.g' => 'esa', 'Thhalv10016681m.g' => 'esa', 'Thhalv10020951m.g' => 'esa', 'TPR.G15598' => 'tpr', 'TPR.G29305' => 'tpr', 'TPR.G32395' => 'tpr', 'TPR.G36998' => 'tpr', 'TPR.G4227' => 'tpr', 'TWI18G1433' => 'twi', 'TWI31G0755' => 'twi', 'TWI38G0912' => 'twi', 'TWI75G1097' => 'twi', 'TWI75G1619' => 'twi', 'TWI79G1336' => 'twi', 'unitig_0.g943' => 'ugi', 'unitig_0.g944' => 'ugi', 'unitig_22.g6646' => 'ugi', 'unitig_37.g12681' => 'ugi', 'unitig_8.g3290' => 'ugi', 'vmacro03278' => 'vma', 'vmacro12197' => 'vma', 'vmacro14478' => 'vma', 'vmacro15787' => 'vma', 'vmacro15789' => 'vma', 'vmacro15790' => 'vma', 'vmacro15806' => 'vma', 'vmacro22907' => 'vma', 'vmacro22908' => 'vma', 'vmacro22909' => 'vma', 'vmacro23108' => 'vma', 'VMungo0540G0540' => 'vmu', 'VMungo0540G2468' => 'vmu', 'VMungo1080G0390' => 'vmu', 'VMungo1080G1165' => 'vmu', 'VMungo1127G0170' => 'vmu', 'VMungo1127G2099' => 'vmu', 'VMungo1215G3013' => 'vmu', 'Zm00001eb013110' => 'zma', 'Zm00001eb084260' => 'zma', 'Zm00001eb096110' => 'zma', 'Zm00001eb217510' => 'zma', 'Zm00001eb322550' => 'zma', 'Zm00001eb390770' => 'zma', 'Zm00001eb397170' => 'zma', 'Zm00001eb404610' => 'zma', 'Zm00001eb421790' => 'zma' ) $gf_id = 'HOM05D000911' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000911' ) $data_identifier = 'HOM05D000911' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 16, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 5, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 6, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 8, 'nnu' => (int) 16, 'oeu' => (int) 8, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 5, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 16, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421790' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000911', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27780' => 'bna', 'A03p35380' => 'bna', 'A04p21160' => 'bna', 'A05p40570' => 'bna', 'A06p26900' => 'bna', 'A08p33230' => 'bna', 'A09p65960' => 'bna', 'A10p18290' => 'bna', 'Aa31LG1G12990' => 'aar', 'Aa31LG1G2980' => 'aar', 'Aa31LG4G14320' => 'aar', 'Aa31LG7G11800' => 'aar', 'Aa31sc36G50' => 'aar', 'Aa31sc36G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3721' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5459' => 'aag', 'Actinidia03028' => 'ach', 'Actinidia03753' => 'ach', 'Actinidia04187' => 'ach', 'Actinidia05509' => 'ach', 'Actinidia24180' => 'ach', 'Actinidia26906' => 'ach', 'Actinidia37097' => 'ach', 'Actinidia38249' => 'ach', 'Ah.01g003470' => 'amhyb', 'Ah.01g004580' => 'amhyb', 'Ah.01g014850' => 'amhyb', 'Ah.01g016830' => 'amhyb', 'Ah.14g088000' => 'amhyb', 'AL1G22980' => 'aly', 'AL3G18990' => 'aly', 'AL4G22440' => 'aly', 'AL4G33180' => 'aly', 'AL5G22920' => 'aly', 'AL6G33660' => 'aly', 'AL8G20720' => 'aly', 'Aqoxy1G00935' => 'aox', 'Aqoxy1G02094' => 'aox', 'Aqoxy2G01239' => 'aox', 'Aqoxy4G01870' => 'aox', 'Aqoxy7G00450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.36ZVTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71EM27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5D6C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH3WRE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3NCM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RIM768' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YB5YRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z36GDV' => 'arhy', 'AT1G08250' => 'ath', 'AT1G11790' => 'ath', 'AT2G27820' => 'ath', 'AT3G07630' => 'ath', 'AT3G44720' => 'ath', 'AT5G22630' => 'ath', 'ATR0693G304' => 'atr', 'ATR0794G109' => 'atr', 'ATR0820G120' => 'atr', 'ATR1159G064' => 'atr', 'Atru.chr10.2239' => 'acertr', 'Atru.chr3.3371' => 'acertr', 'Atru.chr6.3202' => 'acertr', 'AUR62006499' => 'cqu', 'AUR62012718' => 'cqu', 'AUR62021938' => 'cqu', 'AUR62023932' => 'cqu', 'AUR62025034' => 'cqu', 'AUR62025035' => 'cqu', 'AUR62038307' => 'cqu', 'AUR62043466' => 'cqu', 'BcaB02g10748' => 'bca', 'BcaB03g13231' => 'bca', 'BcaB03g14689' => 'bca', 'BcaB05g22716' => 'bca', 'BcaB06g28172' => 'bca', 'BcaB08g36413' => 'bca', 'BcaC01g02186' => 'bca', 'BcaC01g04272' => 'bca', 'BcaC02g08080' => 'bca', 'BcaC02g08227' => 'bca', 'BcaC03g13901' => 'bca', 'BcaC04g19593' => 'bca', 'BcaC04g20874' => 'bca', 'BcaC05g29557' => 'bca', 'BcaC06g35505' => 'bca', 'BcaC07g41954' => 'bca', 'BcaC07g41955' => 'bca', 'BcaC07g41956' => 'bca', 'BcaC07g42519' => 'bca', 'BcaC07g42520' => 'bca', 'BcaC07g42523' => 'bca', 'BcaC07g42524' => 'bca', 'BcaC07g42525' => 'bca', 'BcaC08g47480' => 'bca', 'BcaC08g47481' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00530' => 'bna', 'BolC2t07178H' => 'bol', 'BolC3t16567H' => 'bol', 'BolC4t27234H' => 'bol', 'BolC5t29728H' => 'bol', 'BolC5t34622H' => 'bol', 'BolC6t40321H' => 'bol', 'BolC7t42028H' => 'bol', 'BolC8t49125H' => 'bol', 'BolC8t52538H' => 'bol', 'BolC8t52539H' => 'bol', 'BolC9t56681H' => 'bol', 'BolC9t58266H' => 'bol', 'BolSC21t60294H' => 'bol', 'BraA02t05670Z' => 'bra', 'BraA03t12716Z' => 'bra', 'BraA04t17685Z' => 'bra', 'BraA05t22788Z' => 'bra', 'BraA06t24032Z' => 'bra', 'BraA06t25625Z' => 'bra', 'BraA07t27930Z' => 'bra', 'BraA08t35242Z' => 'bra', 'BraA09t38609Z' => 'bra', 'BraA10t43905Z' => 'bra', 'C02p11060' => 'bna', 'C03p42990' => 'bna', 'C03p67310' => 'bna', 'C04p56990' => 'bna', 'C04p58660' => 'bna', 'C05p09890' => 'bna', 'C05p59680' => 'bna', 'C06p19830' => 'bna', 'C06p53040' => 'bna', 'C07p15230' => 'bna', 'C08p50070' => 'bna', 'C08p50090' => 'bna', 'C09p38330' => 'bna', 'C09p53940' => 'bna', 'CAN.G1014.1' => 'can', 'CAN.G644.30' => 'can', 'CAN.G84.47' => 'can', 'CAN.G919.8' => 'can', 'CANSAT54G0113' => 'cansat', 'CANSAT54G1286' => 'cansat', 'CANSAT64G1020' => 'cansat', 'CARHR008080' => 'chi', 'CARHR008090' => 'chi', 'CARHR012130' => 'chi', 'CARHR038390' => 'chi', 'CARHR082330' => 'chi', 'CARHR120520' => 'chi', 'CARHR151470' => 'chi', 'CARHR190950' => 'chi', 'Carub.0001s0760' => 'cru', 'Carub.0001s1146' => 'cru', 'Carub.0003s0721' => 'cru', 'Carub.0004s0858' => 'cru', 'Carub.0005s1040' => 'cru', 'Carub.0006s2035' => 'cru', 'Carub.0015s0005' => 'cru', 'Ca_01607_v3' => 'car', 'Ca_01677_v3' => 'car', 'Ca_06087_v3' => 'car', 'Ca_19238_v3' => 'car', 'Ca_19373_v3' => 'car', 'Ca_21079_v3' => 'car', 'CBR_g54016' => 'cbr', 'CBR_g54018' => 'cbr', 'CBR_g54020' => 'cbr', 'Cc01_g09780' => 'ccan', 'Cc01_g11680' => 'ccan', 'Cc02_g15610' => 'ccan', 'Cc05_g04350' => 'ccan', 'Cc09_g01580' => 'ccan', 'CDE01G0795' => 'cde', 'CDE02G2024' => 'cde', 'CDE02G2260' => 'cde', 'CDE02G4561' => 'cde', 'CDE05G2733' => 'cde', 'CDE05G3422' => 'cde', 'CDE06G2003' => 'cde', 'CDE08G0576' => 'cde', 'CDE09G0048' => 'cde', 'CDE11G0805' => 'cde', 'Cfa003644' => 'cfa', 'Cfa006290' => 'cfa', 'Cfa010080' => 'cfa', 'Cfa011376' => 'cfa', 'Cfa011576' => 'cfa', 'Cfa011577' => 'cfa', 'Cfa014389' => 'cfa', 'Ciclev10006044m.g' => 'ccl', 'Ciclev10006954m.g' => 'ccl', 'Ciclev10015131m.g' => 'ccl', 'Ciclev10015580m.g' => 'ccl', 'Ciclev10028359m.g' => 'ccl', 'Ciclev10028573m.g' => 'ccl', 'CiPaw.03G159300' => 'cil', 'CiPaw.04G115100' => 'cil', 'CiPaw.09G092800' => 'cil', 'CiPaw.10G071800' => 'cil', 'CiPaw.13G105800' => 'cil', 'CiPaw.13G141000' => 'cil', 'CiPaw.14G103400' => 'cil', 'ClCG01G012700' => 'cla', 'ClCG01G012720' => 'cla', 'ClCG01G021920' => 'cla', 'ClCG02G008870' => 'cla', 'ClCG02G020840' => 'cla', 'ClCG02G021930' => 'cla', 'COL.COLO4_19302' => 'col', 'COL.COLO4_25262' => 'col', 'COL.COLO4_31788' => 'col', 'Cpa.g.c34684' => 'cpa', 'Cpa.g.c36520.1' => 'cpa', 'Cpa.g.c45626' => 'cpa', 'Cpa.g.sc121.17' => 'cpa', 'Cpa.g.sc13.22' => 'cpa', 'Cpa.g.sc87.88' => 'cpa', 'Cre06.g261800' => 'cre', 'CsaV3_1G014500' => 'csa', 'CsaV3_1G014510' => 'csa', 'CsaV3_2G034880' => 'csa', 'CsaV3_6G014760' => 'csa', 'CsaV3_6G021500' => 'csa', 'CsaV3_6G048980' => 'csa', 'CSS0002511' => 'camsi', 'CSS0007556' => 'camsi', 'CSS0008532' => 'camsi', 'CSS0009709' => 'camsi', 'CSS0010486' => 'camsi', 'CSS0016768' => 'camsi', 'CSS0023512' => 'camsi', 'CSS0025341' => 'camsi', 'CSS0027999' => 'camsi', 'CSS0028944' => 'camsi', 'CSS0032292' => 'camsi', 'CSS0032464' => 'camsi', 'CSS0037153' => 'camsi', 'CSS0039256' => 'camsi', 'CSS0048392' => 'camsi', 'CSS0050458' => 'camsi', 'DCAR_004224' => 'dca', 'DCAR_006147' => 'dca', 'DCAR_006465' => 'dca', 'DCAR_008159' => 'dca', 'DCAR_012164' => 'dca', 'DCAR_019764' => 'dca', 'Dinv05418' => 'din', 'Dinv10839' => 'din', 'Dinv12521' => 'din', 'Dinv13900' => 'din', 'Dinv29426' => 'din', 'Duzib150G0263' => 'dzi', 'Duzib168G1178' => 'dzi', 'Duzib168G1924' => 'dzi', 'Duzib170G0299' => 'dzi', 'Duzib170G0813' => 'dzi', 'Duzib235G1128' => 'dzi', 'Duzib248G1060' => 'dzi', 'ECA232G1910' => 'eca', 'ECA233G4621' => 'eca', 'ECA238G1216' => 'eca', 'ECA238G1784' => 'eca', 'ECA248G1242' => 'eca', 'EL10Ac8g20071' => 'bvu', 'EL10Ac9g21086' => 'bvu', 'EL10Ac9g22407' => 'bvu', 'EL10Ac9g22412' => 'bvu', 'Eucgr.A01119' => 'egr', 'Eucgr.E04043' => 'egr', 'Eucgr.J00428' => 'egr', 'Eucgr.J00958' => 'egr', 'FAN11G3091' => 'fan', 'FAN11G3651' => 'fan', 'FAN16G2566' => 'fan', 'FAN21G3155' => 'fan', 'FAN21G3400' => 'fan', 'FAN21G3543' => 'fan', 'FAN25G0234' => 'fan', 'FAN25G1422' => 'fan', 'FAN25G3392' => 'fan', 'FvH4_3g01940' => 'fve', 'FvH4_3g29870' => 'fve', 'FvH4_3g33680' => 'fve', 'Glyma.09G004200' => 'gma', 'Glyma.11G151288' => 'gma', 'Glyma.11G189100' => 'gma', 'Glyma.12G072500' => 'gma', 'Glyma.12G085500' => 'gma', 'Glyma.12G181800' => 'gma', 'Glyma.12G193000' => 'gma', 'Glyma.13G309300' => 'gma', 'Glyma.13G319000' => 'gma', 'Glyma.17G012600' => 'gma', 'Gohir.A06G148600' => 'ghi', 'Gohir.A07G115800' => 'ghi', 'Gohir.A08G003600' => 'ghi', 'Gohir.A09G093300' => 'ghi', 'Gohir.A09G105400' => 'ghi', 'Gohir.A09G105500' => 'ghi', 'Gohir.D06G154600' => 'ghi', 'Gohir.D07G120200' => 'ghi', 'Gohir.D08G013900' => 'ghi', 'Gohir.D09G093100' => 'ghi', 'Gohir.D09G102200' => 'ghi', 'Gohir.D09G102300' => 'ghi', 'Gorai.001G129400' => 'gra', 'Gorai.004G008200' => 'gra', 'Gorai.006G109800' => 'gra', 'Gorai.006G119500' => 'gra', 'Gorai.006G121300' => 'gra', 'Gorai.010G180700' => 'gra', 'GSVIVG01012716001' => 'vvi', 'GSVIVG01025118001' => 'vvi', 'GSVIVG01030439001' => 'vvi', 'GSVIVG01031397001' => 'vvi', 'HanXRQChr01g0004201' => 'han', 'HanXRQChr02g0054941' => 'han', 'HanXRQChr05g0141811' => 'han', 'HanXRQChr07g0197751' => 'han', 'HanXRQChr11g0346691' => 'han', 'HanXRQChr13g0396971' => 'han', 'HanXRQChr14g0432951' => 'han', 'HanXRQChr14g0452001' => 'han', 'HanXRQChr15g0496681' => 'han', 'HanXRQChr17g0557491' => 'han', 'HanXRQChr17g0557501' => 'han', 'Haze_06809' => 'cav', 'Haze_12852' => 'cav', 'Haze_15850' => 'cav', 'Haze_23446' => 'cav', 'Haze_23942' => 'cav', 'Haze_23943' => 'cav', 'Hma1.2p1_0091F.1_g046450' => 'hma', 'Hma1.2p1_0128F.1_g059910' => 'hma', 'Hma1.2p1_0249F.1_g102260' => 'hma', 'Hma1.2p1_0453F.1_g156190' => 'hma', 'Hma1.2p1_0695F.1_g204380' => 'hma', 'Hma1.2p1_0749F.1_g212650' => 'hma', 'Hma1.2p1_2156F.1_g315420' => 'hma', 'Hma1.2p1_2686F.1_g326940' => 'hma', 'HPP92_006428' => 'vpl', 'HPP92_012069' => 'vpl', 'HPP92_014129' => 'vpl', 'HPP92_014133' => 'vpl', 'HPP92_017315' => 'vpl', 'HPP92_026445' => 'vpl', 'HPP92_026446' => 'vpl', 'Hund00774' => 'sun', 'Hund07682' => 'sun', 'Hund21413' => 'sun', 'Hund23462' => 'sun', 'Hund23463' => 'sun', 'Lalb_Chr03g0027911' => 'lal', 'Lalb_Chr13g0304271' => 'lal', 'Lalb_Chr19g0137471' => 'lal', 'Lalb_Chr22g0350651' => 'lal', 'Lalb_Chr24g0395151' => 'lal', 'Lj1A1231T40' => 'lonja', 'Lj1A221T48' => 'lonja', 'Lj1C924T12' => 'lonja', 'Lj2C993G6' => 'lonja', 'Lj3g0005790' => 'lja', 'Lj3g0015432' => 'lja', 'Lj3g0017722' => 'lja', 'Lj3g0018497' => 'lja', 'Lj4g0025071' => 'lja', 'Lsat_1_v5_gn_1_129680' => 'lsa', 'Lsat_1_v5_gn_2_25321' => 'lsa', 'Lsat_1_v5_gn_2_95461' => 'lsa', 'Lsat_1_v5_gn_4_159620' => 'lsa', 'Lsat_1_v5_gn_6_41301' => 'lsa', 'Lsat_1_v5_gn_6_74660' => 'lsa', 'Lsat_1_v5_gn_7_11520' => 'lsa', 'Lsat_1_v5_gn_9_67680' => 'lsa', 'Manes.04G008300' => 'mes', 'Manes.04G008400' => 'mes', 'Manes.04G026500' => 'mes', 'Manes.10G135300' => 'mes', 'Manes.11G157300' => 'mes', 'Manes.12G074000' => 'mes', 'Manes.16G006200' => 'mes', 'Manes.17G026400' => 'mes', 'Mapoly0024s0086' => 'mpo', 'Mapoly0024s0087' => 'mpo', 'Mapoly0071s0057' => 'mpo', 'Mapoly0204s0012' => 'mpo', 'MBI04_g37681_MAGBIO' => 'mbi', 'MBI05_g17779_MAGBIO' => 'mbi', 'MBI12_g31184_MAGBIO' => 'mbi', 'MBI17_g11083_MAGBIO' => 'mbi', 'MBI18_g03883_MAGBIO' => 'mbi', 'MBI18_g28940_MAGBIO' => 'mbi', 'MCO01G690' => 'mco', 'MD03G1109900' => 'mdo', 'MD03G1134800' => 'mdo', 'MD05G1348000' => 'mdo', 'MD10G1322400' => 'mdo', 'MD11G1123300' => 'mdo', 'MD11G1157600' => 'mdo', 'Medtr2g084875' => 'mtr', 'Medtr2g088130' => 'mtr', 'Medtr4g055310' => 'mtr', 'Medtr4g061070' => 'mtr', 'Medtr4g132250' => 'mtr', 'MELO3C004795.2' => 'cme', 'MELO3C004797.2' => 'cme', 'MELO3C007396.2' => 'cme', 'MELO3C019277.2' => 'cme', 'MELO3C021449.2' => 'cme', 'MELO3C025736.2' => 'cme', 'Migut.D02175' => 'egut', 'Migut.H01573' => 'egut', 'Migut.M01327' => 'egut', 'Migut.N02513' => 'egut', 'MSTRG.14638' => 'ama', 'MSTRG.18632' => 'ama', 'MSTRG.7203' => 'ama', 'Nitab4.5_0000533g0140' => 'nta', 'Nitab4.5_0000888g0150' => 'nta', 'Nitab4.5_0001453g0040' => 'nta', 'Nitab4.5_0002827g0090' => 'nta', 'Nitab4.5_0003082g0040' => 'nta', 'Nitab4.5_0007799g0040' => 'nta', 'Nitab4.5_0008983g0010' => 'nta', 'Nitab4.5_0009017g0020' => 'nta', 'Nn1g02132' => 'nnu', 'Nn1g03492' => 'nnu', 'Nn1g03493' => 'nnu', 'Nn1g03494' => 'nnu', 'Nn1g07164' => 'nnu', 'Nn1g07291' => 'nnu', 'Nn2g10655' => 'nnu', 'Nn2g11652' => 'nnu', 'Nn2g14008' => 'nnu', 'Nn3g17476' => 'nnu', 'Nn3g17477' => 'nnu', 'Nn4g22370' => 'nnu', 'Nn4g25255' => 'nnu', 'Nn5g27755' => 'nnu', 'Nn6g34260' => 'nnu', 'Nn6g35041' => 'nnu', 'Oeu005924.1' => 'oeu', 'Oeu008383.1' => 'oeu', 'Oeu014928.1' => 'oeu', 'Oeu019889.1' => 'oeu', 'Oeu022271.1' => 'oeu', 'Oeu025271.1' => 'oeu', 'Oeu036302.1' => 'oeu', 'Oeu044100.1' => 'oeu', 'Os01g0528300' => 'osa', 'Os03g0286200' => 'osa', 'Os04g0406600' => 'osa', 'Os07g0512000' => 'osa', 'Os07g0694600' => 'osa', 'Os08g0411000' => 'osa', 'Os09g0565700' => 'osa', 'Os09g0566050' => 'osa', 'Os10g0523700' => 'osa', 'Peaxi162Scf00002g00514' => 'pax', 'Peaxi162Scf00047g01817' => 'pax', 'Peaxi162Scf00114g00001' => 'pax', 'Peaxi162Scf00147g00613' => 'pax', 'Peaxi162Scf00389g00425' => 'pax', 'PGR042G1139' => 'pgr', 'PGR042G3273' => 'pgr', 'PGR102G2180' => 'pgr', 'PGR119G0234' => 'pgr', 'PGR119G0668' => 'pgr', 'PGSC0003DMG400007122' => 'stu', 'PGSC0003DMG400016478' => 'stu', 'PGSC0003DMG400025374' => 'stu', 'PGSC0003DMG400026536' => 'stu', 'Phvul.003G079600' => 'pvu', 'Phvul.005G115600' => 'pvu', 'Phvul.005G127100' => 'pvu', 'Phvul.006G149500' => 'pvu', 'Phvul.006G149600' => 'pvu', 'Phvul.011G071800' => 'pvu', 'Phvul.011G090400' => 'pvu', 'Potri.004G013400' => 'ptr', 'Potri.004G188100' => 'ptr', 'Potri.008G195500' => 'ptr', 'Potri.009G148800' => 'ptr', 'Potri.011G004700' => 'ptr', 'Pp3c17_22810' => 'ppa', 'Pp3c18_4480' => 'ppa', 'Pp3c19_13030' => 'ppa', 'Pp3c1_33620' => 'ppa', 'Pp3c2_9380' => 'ppa', 'PRCOL_00001023' => 'pco', 'Prupe.3G216300' => 'ppe', 'Prupe.4G019500' => 'ppe', 'Prupe.6G092500' => 'ppe', 'Prupe.6G119200' => 'ppe', 'Psat0s1945g0080' => 'psa', 'Psat0s4167g0040' => 'psa', 'Psat1g185800' => 'psa', 'Psat4g006440' => 'psa', 'Psat4g006480' => 'psa', 'Psat4g168120' => 'psa', 'Psat5g255680' => 'psa', 'Psat5g261760' => 'psa', 'Psat7g222120' => 'psa', 'PSO063G7252' => 'pso', 'PSO170G4778' => 'pso', 'PSO210G2249' => 'pso', 'PSO339G2411' => 'pso', 'PSO339G2457' => 'pso', 'PSO339G2854' => 'pso', 'PSO339G4288' => 'pso', 'PSO339G4615' => 'pso', 'PSO384G2796' => 'pso', 'PSO384G2940' => 'pso', 'PSO384G4227' => 'pso', 'PSO478G1425' => 'pso', 'PSO541G3863' => 'pso', 'PSO675G0507' => 'pso', 'PSO782G0338' => 'pso', 'PSO832G0644' => 'pso', 'QL01p013664' => 'qlo', 'QL01p036598' => 'qlo', 'QL05p072984' => 'qlo', 'QL08p005768' => 'qlo', 'QL08p032743' => 'qlo', 'QL93p0073_0439' => 'qlo', 'QL93p0073_0444' => 'qlo', 'RcHm_v2.0_Chr5g0002851' => 'rch', 'RcHm_v2.0_Chr5g0055201' => 'rch', 'RcHm_v2.0_Chr5g0061191' => 'rch', 'RcHm_v2.0_Chr7g0203231' => 'rch', 'Rhsim01G0208100' => 'rsi', 'Rhsim01G0208200' => 'rsi', 'Rhsim02G0106500' => 'rsi', 'Rhsim03G0107900' => 'rsi', 'Rhsim06G0163400' => 'rsi', 'Rhsim13G0105200' => 'rsi', 'Sabra04G0006300' => 'sbr', 'Sabra04G0127000' => 'sbr', 'Sabra08G0148700' => 'sbr', 'Sabra09G0117400' => 'sbr', 'SalBow1G3326' => 'sbo', 'SalBow3G3228' => 'sbo', 'SalBow6G1634' => 'sbo', 'SalBow6G3603' => 'sbo', 'SalBow6G5266' => 'sbo', 'SalBow7G2265' => 'sbo', 'SalBow8G0850' => 'sbo', 'SalBow8G2592' => 'sbo', 'Sc05g0009240' => 'sci', 'Sc12g0002300' => 'sci', 'Sc21g0000100' => 'sci', 'Sc21g0004720' => 'sci', 'Sed0002949' => 'sed', 'Sed0004114' => 'sed', 'Sed0004306' => 'sed', 'Sed0006172' => 'sed', 'Sed0008413' => 'sed', 'Sed0013809' => 'sed', 'Sed0019556' => 'sed', 'SEGI_03570' => 'sgi', 'SEGI_07859' => 'sgi', 'SEGI_15042' => 'sgi', 'SEGI_16263' => 'sgi', 'SEGI_16552' => 'sgi', 'SEGI_24331' => 'sgi', 'SEGI_27316' => 'sgi', 'SEGI_29521' => 'sgi', 'SEGI_41342' => 'sgi', 'SGA_v2.0_scaffold27G11617' => 'sas', 'SGA_v2.0_scaffold316G48428' => 'sas', 'SGA_v2.0_scaffold49G18261' => 'sas', 'SGA_v2.0_scaffold7G03831' => 'sas', 'SGA_v2.0_scaffold93G28359' => 'sas', 'SHI02210' => 'shi', 'SHI06028' => 'shi', 'SHI06321' => 'shi', 'SMO111G0012' => 'smo', 'SMO228G0080' => 'smo', 'SMO356G0756' => 'smo', 'Solyc02g080620.3' => 'sly', 'Solyc06g074530.1' => 'sly', 'Solyc11g066890.1' => 'sly', 'Solyc11g072520.3' => 'sly', 'Sopen02g025330' => 'spe', 'Sopen06g031000' => 'spe', 'Sopen09g008240' => 'spe', 'Sopen09g025210' => 'spe', 'Sopen11g026600' => 'spe', 'Sopen11g030170' => 'spe', 'Sp1g10420' => 'spa', 'Sp3g06570' => 'spa', 'Sp4g10660' => 'spa', 'Sp5g16460' => 'spa', 'Sp6g22710' => 'spa', 'TAR365G0112' => 'tar', 'TAR369G0717' => 'tar', 'TAR374G0976' => 'tar', 'TAR623G1128' => 'tar', 'TAR626G1937' => 'tar', 'TAR627G0123' => 'tar', 'TAR628G0305' => 'tar', 'TAR636G1176' => 'tar', 'TAR636G2442' => 'tar', 'THA.LOC104800556' => 'tha', 'THA.LOC104809501' => 'tha', 'THA.LOC104815126' => 'tha', 'THA.LOC104815732' => 'tha', 'THA.LOC104823528' => 'tha', 'Thecc.02G365600' => 'tca', 'Thecc.06G222300' => 'tca', 'Thecc.09G261800' => 'tca', 'Thecc.09G291400' => 'tca', 'Thhalv10003028m.g' => 'esa', 'Thhalv10007886m.g' => 'esa', 'Thhalv10016085m.g' => 'esa', 'Thhalv10016681m.g' => 'esa', 'Thhalv10020951m.g' => 'esa', 'TPR.G15598' => 'tpr', 'TPR.G29305' => 'tpr', 'TPR.G32395' => 'tpr', 'TPR.G36998' => 'tpr', 'TPR.G4227' => 'tpr', 'TWI18G1433' => 'twi', 'TWI31G0755' => 'twi', 'TWI38G0912' => 'twi', 'TWI75G1097' => 'twi', 'TWI75G1619' => 'twi', 'TWI79G1336' => 'twi', 'unitig_0.g943' => 'ugi', 'unitig_0.g944' => 'ugi', 'unitig_22.g6646' => 'ugi', 'unitig_37.g12681' => 'ugi', 'unitig_8.g3290' => 'ugi', 'vmacro03278' => 'vma', 'vmacro12197' => 'vma', 'vmacro14478' => 'vma', 'vmacro15787' => 'vma', 'vmacro15789' => 'vma', 'vmacro15790' => 'vma', 'vmacro15806' => 'vma', 'vmacro22907' => 'vma', 'vmacro22908' => 'vma', 'vmacro22909' => 'vma', 'vmacro23108' => 'vma', 'VMungo0540G0540' => 'vmu', 'VMungo0540G2468' => 'vmu', 'VMungo1080G0390' => 'vmu', 'VMungo1080G1165' => 'vmu', 'VMungo1127G0170' => 'vmu', 'VMungo1127G2099' => 'vmu', 'VMungo1215G3013' => 'vmu', 'Zm00001eb013110' => 'zma', 'Zm00001eb084260' => 'zma', 'Zm00001eb096110' => 'zma', 'Zm00001eb217510' => 'zma', 'Zm00001eb322550' => 'zma', 'Zm00001eb390770' => 'zma', 'Zm00001eb397170' => 'zma', 'Zm00001eb404610' => 'zma', 'Zm00001eb421790' => 'zma' ), 'gf_id' => 'HOM05D000911', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000911' ), 'data_identifier' => 'HOM05D000911', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000911', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27780' => 'bna', 'A03p35380' => 'bna', 'A04p21160' => 'bna', 'A05p40570' => 'bna', 'A06p26900' => 'bna', 'A08p33230' => 'bna', 'A09p65960' => 'bna', 'A10p18290' => 'bna', 'Aa31LG1G12990' => 'aar', 'Aa31LG1G2980' => 'aar', 'Aa31LG4G14320' => 'aar', 'Aa31LG7G11800' => 'aar', 'Aa31sc36G50' => 'aar', 'Aa31sc36G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3721' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5459' => 'aag', 'Actinidia03028' => 'ach', 'Actinidia03753' => 'ach', 'Actinidia04187' => 'ach', 'Actinidia05509' => 'ach', 'Actinidia24180' => 'ach', 'Actinidia26906' => 'ach', 'Actinidia37097' => 'ach', 'Actinidia38249' => 'ach', 'Ah.01g003470' => 'amhyb', 'Ah.01g004580' => 'amhyb', 'Ah.01g014850' => 'amhyb', 'Ah.01g016830' => 'amhyb', 'Ah.14g088000' => 'amhyb', 'AL1G22980' => 'aly', 'AL3G18990' => 'aly', 'AL4G22440' => 'aly', 'AL4G33180' => 'aly', 'AL5G22920' => 'aly', 'AL6G33660' => 'aly', 'AL8G20720' => 'aly', 'Aqoxy1G00935' => 'aox', 'Aqoxy1G02094' => 'aox', 'Aqoxy2G01239' => 'aox', 'Aqoxy4G01870' => 'aox', 'Aqoxy7G00450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.36ZVTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71EM27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5D6C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH3WRE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3NCM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RIM768' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YB5YRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z36GDV' => 'arhy', 'AT1G08250' => 'ath', 'AT1G11790' => 'ath', 'AT2G27820' => 'ath', 'AT3G07630' => 'ath', 'AT3G44720' => 'ath', 'AT5G22630' => 'ath', 'ATR0693G304' => 'atr', 'ATR0794G109' => 'atr', 'ATR0820G120' => 'atr', 'ATR1159G064' => 'atr', 'Atru.chr10.2239' => 'acertr', 'Atru.chr3.3371' => 'acertr', 'Atru.chr6.3202' => 'acertr', 'AUR62006499' => 'cqu', 'AUR62012718' => 'cqu', 'AUR62021938' => 'cqu', 'AUR62023932' => 'cqu', 'AUR62025034' => 'cqu', 'AUR62025035' => 'cqu', 'AUR62038307' => 'cqu', 'AUR62043466' => 'cqu', 'BcaB02g10748' => 'bca', 'BcaB03g13231' => 'bca', 'BcaB03g14689' => 'bca', 'BcaB05g22716' => 'bca', 'BcaB06g28172' => 'bca', 'BcaB08g36413' => 'bca', 'BcaC01g02186' => 'bca', 'BcaC01g04272' => 'bca', 'BcaC02g08080' => 'bca', 'BcaC02g08227' => 'bca', 'BcaC03g13901' => 'bca', 'BcaC04g19593' => 'bca', 'BcaC04g20874' => 'bca', 'BcaC05g29557' => 'bca', 'BcaC06g35505' => 'bca', 'BcaC07g41954' => 'bca', 'BcaC07g41955' => 'bca', 'BcaC07g41956' => 'bca', 'BcaC07g42519' => 'bca', 'BcaC07g42520' => 'bca', 'BcaC07g42523' => 'bca', 'BcaC07g42524' => 'bca', 'BcaC07g42525' => 'bca', 'BcaC08g47480' => 'bca', 'BcaC08g47481' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00530' => 'bna', 'BolC2t07178H' => 'bol', 'BolC3t16567H' => 'bol', 'BolC4t27234H' => 'bol', 'BolC5t29728H' => 'bol', 'BolC5t34622H' => 'bol', 'BolC6t40321H' => 'bol', 'BolC7t42028H' => 'bol', 'BolC8t49125H' => 'bol', 'BolC8t52538H' => 'bol', 'BolC8t52539H' => 'bol', 'BolC9t56681H' => 'bol', 'BolC9t58266H' => 'bol', 'BolSC21t60294H' => 'bol', 'BraA02t05670Z' => 'bra', 'BraA03t12716Z' => 'bra', 'BraA04t17685Z' => 'bra', 'BraA05t22788Z' => 'bra', 'BraA06t24032Z' => 'bra', 'BraA06t25625Z' => 'bra', 'BraA07t27930Z' => 'bra', 'BraA08t35242Z' => 'bra', 'BraA09t38609Z' => 'bra', 'BraA10t43905Z' => 'bra', 'C02p11060' => 'bna', 'C03p42990' => 'bna', 'C03p67310' => 'bna', 'C04p56990' => 'bna', 'C04p58660' => 'bna', 'C05p09890' => 'bna', 'C05p59680' => 'bna', 'C06p19830' => 'bna', 'C06p53040' => 'bna', 'C07p15230' => 'bna', 'C08p50070' => 'bna', 'C08p50090' => 'bna', 'C09p38330' => 'bna', 'C09p53940' => 'bna', 'CAN.G1014.1' => 'can', 'CAN.G644.30' => 'can', 'CAN.G84.47' => 'can', 'CAN.G919.8' => 'can', 'CANSAT54G0113' => 'cansat', 'CANSAT54G1286' => 'cansat', 'CANSAT64G1020' => 'cansat', 'CARHR008080' => 'chi', 'CARHR008090' => 'chi', 'CARHR012130' => 'chi', 'CARHR038390' => 'chi', 'CARHR082330' => 'chi', 'CARHR120520' => 'chi', 'CARHR151470' => 'chi', 'CARHR190950' => 'chi', 'Carub.0001s0760' => 'cru', 'Carub.0001s1146' => 'cru', 'Carub.0003s0721' => 'cru', 'Carub.0004s0858' => 'cru', 'Carub.0005s1040' => 'cru', 'Carub.0006s2035' => 'cru', 'Carub.0015s0005' => 'cru', 'Ca_01607_v3' => 'car', 'Ca_01677_v3' => 'car', 'Ca_06087_v3' => 'car', 'Ca_19238_v3' => 'car', 'Ca_19373_v3' => 'car', 'Ca_21079_v3' => 'car', 'CBR_g54016' => 'cbr', 'CBR_g54018' => 'cbr', 'CBR_g54020' => 'cbr', 'Cc01_g09780' => 'ccan', 'Cc01_g11680' => 'ccan', 'Cc02_g15610' => 'ccan', 'Cc05_g04350' => 'ccan', 'Cc09_g01580' => 'ccan', 'CDE01G0795' => 'cde', 'CDE02G2024' => 'cde', 'CDE02G2260' => 'cde', 'CDE02G4561' => 'cde', 'CDE05G2733' => 'cde', 'CDE05G3422' => 'cde', 'CDE06G2003' => 'cde', 'CDE08G0576' => 'cde', 'CDE09G0048' => 'cde', 'CDE11G0805' => 'cde', 'Cfa003644' => 'cfa', 'Cfa006290' => 'cfa', 'Cfa010080' => 'cfa', 'Cfa011376' => 'cfa', 'Cfa011576' => 'cfa', 'Cfa011577' => 'cfa', 'Cfa014389' => 'cfa', 'Ciclev10006044m.g' => 'ccl', 'Ciclev10006954m.g' => 'ccl', 'Ciclev10015131m.g' => 'ccl', 'Ciclev10015580m.g' => 'ccl', 'Ciclev10028359m.g' => 'ccl', 'Ciclev10028573m.g' => 'ccl', 'CiPaw.03G159300' => 'cil', 'CiPaw.04G115100' => 'cil', 'CiPaw.09G092800' => 'cil', 'CiPaw.10G071800' => 'cil', 'CiPaw.13G105800' => 'cil', 'CiPaw.13G141000' => 'cil', 'CiPaw.14G103400' => 'cil', 'ClCG01G012700' => 'cla', 'ClCG01G012720' => 'cla', 'ClCG01G021920' => 'cla', 'ClCG02G008870' => 'cla', 'ClCG02G020840' => 'cla', 'ClCG02G021930' => 'cla', 'COL.COLO4_19302' => 'col', 'COL.COLO4_25262' => 'col', 'COL.COLO4_31788' => 'col', 'Cpa.g.c34684' => 'cpa', 'Cpa.g.c36520.1' => 'cpa', 'Cpa.g.c45626' => 'cpa', 'Cpa.g.sc121.17' => 'cpa', 'Cpa.g.sc13.22' => 'cpa', 'Cpa.g.sc87.88' => 'cpa', 'Cre06.g261800' => 'cre', 'CsaV3_1G014500' => 'csa', 'CsaV3_1G014510' => 'csa', 'CsaV3_2G034880' => 'csa', 'CsaV3_6G014760' => 'csa', 'CsaV3_6G021500' => 'csa', 'CsaV3_6G048980' => 'csa', 'CSS0002511' => 'camsi', 'CSS0007556' => 'camsi', 'CSS0008532' => 'camsi', 'CSS0009709' => 'camsi', 'CSS0010486' => 'camsi', 'CSS0016768' => 'camsi', 'CSS0023512' => 'camsi', 'CSS0025341' => 'camsi', 'CSS0027999' => 'camsi', 'CSS0028944' => 'camsi', 'CSS0032292' => 'camsi', 'CSS0032464' => 'camsi', 'CSS0037153' => 'camsi', 'CSS0039256' => 'camsi', 'CSS0048392' => 'camsi', 'CSS0050458' => 'camsi', 'DCAR_004224' => 'dca', 'DCAR_006147' => 'dca', 'DCAR_006465' => 'dca', 'DCAR_008159' => 'dca', 'DCAR_012164' => 'dca', 'DCAR_019764' => 'dca', 'Dinv05418' => 'din', 'Dinv10839' => 'din', 'Dinv12521' => 'din', 'Dinv13900' => 'din', 'Dinv29426' => 'din', 'Duzib150G0263' => 'dzi', 'Duzib168G1178' => 'dzi', 'Duzib168G1924' => 'dzi', 'Duzib170G0299' => 'dzi', 'Duzib170G0813' => 'dzi', 'Duzib235G1128' => 'dzi', 'Duzib248G1060' => 'dzi', 'ECA232G1910' => 'eca', 'ECA233G4621' => 'eca', 'ECA238G1216' => 'eca', 'ECA238G1784' => 'eca', 'ECA248G1242' => 'eca', 'EL10Ac8g20071' => 'bvu', 'EL10Ac9g21086' => 'bvu', 'EL10Ac9g22407' => 'bvu', 'EL10Ac9g22412' => 'bvu', 'Eucgr.A01119' => 'egr', 'Eucgr.E04043' => 'egr', 'Eucgr.J00428' => 'egr', 'Eucgr.J00958' => 'egr', 'FAN11G3091' => 'fan', 'FAN11G3651' => 'fan', 'FAN16G2566' => 'fan', 'FAN21G3155' => 'fan', 'FAN21G3400' => 'fan', 'FAN21G3543' => 'fan', 'FAN25G0234' => 'fan', 'FAN25G1422' => 'fan', 'FAN25G3392' => 'fan', 'FvH4_3g01940' => 'fve', 'FvH4_3g29870' => 'fve', 'FvH4_3g33680' => 'fve', 'Glyma.09G004200' => 'gma', 'Glyma.11G151288' => 'gma', 'Glyma.11G189100' => 'gma', 'Glyma.12G072500' => 'gma', 'Glyma.12G085500' => 'gma', 'Glyma.12G181800' => 'gma', 'Glyma.12G193000' => 'gma', 'Glyma.13G309300' => 'gma', 'Glyma.13G319000' => 'gma', 'Glyma.17G012600' => 'gma', 'Gohir.A06G148600' => 'ghi', 'Gohir.A07G115800' => 'ghi', 'Gohir.A08G003600' => 'ghi', 'Gohir.A09G093300' => 'ghi', 'Gohir.A09G105400' => 'ghi', 'Gohir.A09G105500' => 'ghi', 'Gohir.D06G154600' => 'ghi', 'Gohir.D07G120200' => 'ghi', 'Gohir.D08G013900' => 'ghi', 'Gohir.D09G093100' => 'ghi', 'Gohir.D09G102200' => 'ghi', 'Gohir.D09G102300' => 'ghi', 'Gorai.001G129400' => 'gra', 'Gorai.004G008200' => 'gra', 'Gorai.006G109800' => 'gra', 'Gorai.006G119500' => 'gra', 'Gorai.006G121300' => 'gra', 'Gorai.010G180700' => 'gra', 'GSVIVG01012716001' => 'vvi', 'GSVIVG01025118001' => 'vvi', 'GSVIVG01030439001' => 'vvi', 'GSVIVG01031397001' => 'vvi', 'HanXRQChr01g0004201' => 'han', 'HanXRQChr02g0054941' => 'han', 'HanXRQChr05g0141811' => 'han', 'HanXRQChr07g0197751' => 'han', 'HanXRQChr11g0346691' => 'han', 'HanXRQChr13g0396971' => 'han', 'HanXRQChr14g0432951' => 'han', 'HanXRQChr14g0452001' => 'han', 'HanXRQChr15g0496681' => 'han', 'HanXRQChr17g0557491' => 'han', 'HanXRQChr17g0557501' => 'han', 'Haze_06809' => 'cav', 'Haze_12852' => 'cav', 'Haze_15850' => 'cav', 'Haze_23446' => 'cav', 'Haze_23942' => 'cav', 'Haze_23943' => 'cav', 'Hma1.2p1_0091F.1_g046450' => 'hma', 'Hma1.2p1_0128F.1_g059910' => 'hma', 'Hma1.2p1_0249F.1_g102260' => 'hma', 'Hma1.2p1_0453F.1_g156190' => 'hma', 'Hma1.2p1_0695F.1_g204380' => 'hma', 'Hma1.2p1_0749F.1_g212650' => 'hma', 'Hma1.2p1_2156F.1_g315420' => 'hma', 'Hma1.2p1_2686F.1_g326940' => 'hma', 'HPP92_006428' => 'vpl', 'HPP92_012069' => 'vpl', 'HPP92_014129' => 'vpl', 'HPP92_014133' => 'vpl', 'HPP92_017315' => 'vpl', 'HPP92_026445' => 'vpl', 'HPP92_026446' => 'vpl', 'Hund00774' => 'sun', 'Hund07682' => 'sun', 'Hund21413' => 'sun', 'Hund23462' => 'sun', 'Hund23463' => 'sun', 'Lalb_Chr03g0027911' => 'lal', 'Lalb_Chr13g0304271' => 'lal', 'Lalb_Chr19g0137471' => 'lal', 'Lalb_Chr22g0350651' => 'lal', 'Lalb_Chr24g0395151' => 'lal', 'Lj1A1231T40' => 'lonja', 'Lj1A221T48' => 'lonja', 'Lj1C924T12' => 'lonja', 'Lj2C993G6' => 'lonja', 'Lj3g0005790' => 'lja', 'Lj3g0015432' => 'lja', 'Lj3g0017722' => 'lja', 'Lj3g0018497' => 'lja', 'Lj4g0025071' => 'lja', 'Lsat_1_v5_gn_1_129680' => 'lsa', 'Lsat_1_v5_gn_2_25321' => 'lsa', 'Lsat_1_v5_gn_2_95461' => 'lsa', 'Lsat_1_v5_gn_4_159620' => 'lsa', 'Lsat_1_v5_gn_6_41301' => 'lsa', 'Lsat_1_v5_gn_6_74660' => 'lsa', 'Lsat_1_v5_gn_7_11520' => 'lsa', 'Lsat_1_v5_gn_9_67680' => 'lsa', 'Manes.04G008300' => 'mes', 'Manes.04G008400' => 'mes', 'Manes.04G026500' => 'mes', 'Manes.10G135300' => 'mes', 'Manes.11G157300' => 'mes', 'Manes.12G074000' => 'mes', 'Manes.16G006200' => 'mes', 'Manes.17G026400' => 'mes', 'Mapoly0024s0086' => 'mpo', 'Mapoly0024s0087' => 'mpo', 'Mapoly0071s0057' => 'mpo', 'Mapoly0204s0012' => 'mpo', 'MBI04_g37681_MAGBIO' => 'mbi', 'MBI05_g17779_MAGBIO' => 'mbi', 'MBI12_g31184_MAGBIO' => 'mbi', 'MBI17_g11083_MAGBIO' => 'mbi', 'MBI18_g03883_MAGBIO' => 'mbi', 'MBI18_g28940_MAGBIO' => 'mbi', 'MCO01G690' => 'mco', 'MD03G1109900' => 'mdo', 'MD03G1134800' => 'mdo', 'MD05G1348000' => 'mdo', 'MD10G1322400' => 'mdo', 'MD11G1123300' => 'mdo', 'MD11G1157600' => 'mdo', 'Medtr2g084875' => 'mtr', 'Medtr2g088130' => 'mtr', 'Medtr4g055310' => 'mtr', 'Medtr4g061070' => 'mtr', 'Medtr4g132250' => 'mtr', 'MELO3C004795.2' => 'cme', 'MELO3C004797.2' => 'cme', 'MELO3C007396.2' => 'cme', 'MELO3C019277.2' => 'cme', 'MELO3C021449.2' => 'cme', 'MELO3C025736.2' => 'cme', 'Migut.D02175' => 'egut', 'Migut.H01573' => 'egut', 'Migut.M01327' => 'egut', 'Migut.N02513' => 'egut', 'MSTRG.14638' => 'ama', 'MSTRG.18632' => 'ama', 'MSTRG.7203' => 'ama', 'Nitab4.5_0000533g0140' => 'nta', 'Nitab4.5_0000888g0150' => 'nta', 'Nitab4.5_0001453g0040' => 'nta', 'Nitab4.5_0002827g0090' => 'nta', 'Nitab4.5_0003082g0040' => 'nta', 'Nitab4.5_0007799g0040' => 'nta', 'Nitab4.5_0008983g0010' => 'nta', 'Nitab4.5_0009017g0020' => 'nta', 'Nn1g02132' => 'nnu', 'Nn1g03492' => 'nnu', 'Nn1g03493' => 'nnu', 'Nn1g03494' => 'nnu', 'Nn1g07164' => 'nnu', 'Nn1g07291' => 'nnu', 'Nn2g10655' => 'nnu', 'Nn2g11652' => 'nnu', 'Nn2g14008' => 'nnu', 'Nn3g17476' => 'nnu', 'Nn3g17477' => 'nnu', 'Nn4g22370' => 'nnu', 'Nn4g25255' => 'nnu', 'Nn5g27755' => 'nnu', 'Nn6g34260' => 'nnu', 'Nn6g35041' => 'nnu', 'Oeu005924.1' => 'oeu', 'Oeu008383.1' => 'oeu', 'Oeu014928.1' => 'oeu', 'Oeu019889.1' => 'oeu', 'Oeu022271.1' => 'oeu', 'Oeu025271.1' => 'oeu', 'Oeu036302.1' => 'oeu', 'Oeu044100.1' => 'oeu', 'Os01g0528300' => 'osa', 'Os03g0286200' => 'osa', 'Os04g0406600' => 'osa', 'Os07g0512000' => 'osa', 'Os07g0694600' => 'osa', 'Os08g0411000' => 'osa', 'Os09g0565700' => 'osa', 'Os09g0566050' => 'osa', 'Os10g0523700' => 'osa', 'Peaxi162Scf00002g00514' => 'pax', 'Peaxi162Scf00047g01817' => 'pax', 'Peaxi162Scf00114g00001' => 'pax', 'Peaxi162Scf00147g00613' => 'pax', 'Peaxi162Scf00389g00425' => 'pax', 'PGR042G1139' => 'pgr', 'PGR042G3273' => 'pgr', 'PGR102G2180' => 'pgr', 'PGR119G0234' => 'pgr', 'PGR119G0668' => 'pgr', 'PGSC0003DMG400007122' => 'stu', 'PGSC0003DMG400016478' => 'stu', 'PGSC0003DMG400025374' => 'stu', 'PGSC0003DMG400026536' => 'stu', 'Phvul.003G079600' => 'pvu', 'Phvul.005G115600' => 'pvu', 'Phvul.005G127100' => 'pvu', 'Phvul.006G149500' => 'pvu', 'Phvul.006G149600' => 'pvu', 'Phvul.011G071800' => 'pvu', 'Phvul.011G090400' => 'pvu', 'Potri.004G013400' => 'ptr', 'Potri.004G188100' => 'ptr', 'Potri.008G195500' => 'ptr', 'Potri.009G148800' => 'ptr', 'Potri.011G004700' => 'ptr', 'Pp3c17_22810' => 'ppa', 'Pp3c18_4480' => 'ppa', 'Pp3c19_13030' => 'ppa', 'Pp3c1_33620' => 'ppa', 'Pp3c2_9380' => 'ppa', 'PRCOL_00001023' => 'pco', 'Prupe.3G216300' => 'ppe', 'Prupe.4G019500' => 'ppe', 'Prupe.6G092500' => 'ppe', 'Prupe.6G119200' => 'ppe', 'Psat0s1945g0080' => 'psa', 'Psat0s4167g0040' => 'psa', 'Psat1g185800' => 'psa', 'Psat4g006440' => 'psa', 'Psat4g006480' => 'psa', 'Psat4g168120' => 'psa', 'Psat5g255680' => 'psa', 'Psat5g261760' => 'psa', 'Psat7g222120' => 'psa', 'PSO063G7252' => 'pso', 'PSO170G4778' => 'pso', 'PSO210G2249' => 'pso', 'PSO339G2411' => 'pso', 'PSO339G2457' => 'pso', 'PSO339G2854' => 'pso', 'PSO339G4288' => 'pso', 'PSO339G4615' => 'pso', 'PSO384G2796' => 'pso', 'PSO384G2940' => 'pso', 'PSO384G4227' => 'pso', 'PSO478G1425' => 'pso', 'PSO541G3863' => 'pso', 'PSO675G0507' => 'pso', 'PSO782G0338' => 'pso', 'PSO832G0644' => 'pso', 'QL01p013664' => 'qlo', 'QL01p036598' => 'qlo', 'QL05p072984' => 'qlo', 'QL08p005768' => 'qlo', 'QL08p032743' => 'qlo', 'QL93p0073_0439' => 'qlo', 'QL93p0073_0444' => 'qlo', 'RcHm_v2.0_Chr5g0002851' => 'rch', 'RcHm_v2.0_Chr5g0055201' => 'rch', 'RcHm_v2.0_Chr5g0061191' => 'rch', 'RcHm_v2.0_Chr7g0203231' => 'rch', 'Rhsim01G0208100' => 'rsi', 'Rhsim01G0208200' => 'rsi', 'Rhsim02G0106500' => 'rsi', 'Rhsim03G0107900' => 'rsi', 'Rhsim06G0163400' => 'rsi', 'Rhsim13G0105200' => 'rsi', 'Sabra04G0006300' => 'sbr', 'Sabra04G0127000' => 'sbr', 'Sabra08G0148700' => 'sbr', 'Sabra09G0117400' => 'sbr', 'SalBow1G3326' => 'sbo', 'SalBow3G3228' => 'sbo', 'SalBow6G1634' => 'sbo', 'SalBow6G3603' => 'sbo', 'SalBow6G5266' => 'sbo', 'SalBow7G2265' => 'sbo', 'SalBow8G0850' => 'sbo', 'SalBow8G2592' => 'sbo', 'Sc05g0009240' => 'sci', 'Sc12g0002300' => 'sci', 'Sc21g0000100' => 'sci', 'Sc21g0004720' => 'sci', 'Sed0002949' => 'sed', 'Sed0004114' => 'sed', 'Sed0004306' => 'sed', 'Sed0006172' => 'sed', 'Sed0008413' => 'sed', 'Sed0013809' => 'sed', 'Sed0019556' => 'sed', 'SEGI_03570' => 'sgi', 'SEGI_07859' => 'sgi', 'SEGI_15042' => 'sgi', 'SEGI_16263' => 'sgi', 'SEGI_16552' => 'sgi', 'SEGI_24331' => 'sgi', 'SEGI_27316' => 'sgi', 'SEGI_29521' => 'sgi', 'SEGI_41342' => 'sgi', 'SGA_v2.0_scaffold27G11617' => 'sas', 'SGA_v2.0_scaffold316G48428' => 'sas', 'SGA_v2.0_scaffold49G18261' => 'sas', 'SGA_v2.0_scaffold7G03831' => 'sas', 'SGA_v2.0_scaffold93G28359' => 'sas', 'SHI02210' => 'shi', 'SHI06028' => 'shi', 'SHI06321' => 'shi', 'SMO111G0012' => 'smo', 'SMO228G0080' => 'smo', 'SMO356G0756' => 'smo', 'Solyc02g080620.3' => 'sly', 'Solyc06g074530.1' => 'sly', 'Solyc11g066890.1' => 'sly', 'Solyc11g072520.3' => 'sly', 'Sopen02g025330' => 'spe', 'Sopen06g031000' => 'spe', 'Sopen09g008240' => 'spe', 'Sopen09g025210' => 'spe', 'Sopen11g026600' => 'spe', 'Sopen11g030170' => 'spe', 'Sp1g10420' => 'spa', 'Sp3g06570' => 'spa', 'Sp4g10660' => 'spa', 'Sp5g16460' => 'spa', 'Sp6g22710' => 'spa', 'TAR365G0112' => 'tar', 'TAR369G0717' => 'tar', 'TAR374G0976' => 'tar', 'TAR623G1128' => 'tar', 'TAR626G1937' => 'tar', 'TAR627G0123' => 'tar', 'TAR628G0305' => 'tar', 'TAR636G1176' => 'tar', 'TAR636G2442' => 'tar', 'THA.LOC104800556' => 'tha', 'THA.LOC104809501' => 'tha', 'THA.LOC104815126' => 'tha', 'THA.LOC104815732' => 'tha', 'THA.LOC104823528' => 'tha', 'Thecc.02G365600' => 'tca', 'Thecc.06G222300' => 'tca', 'Thecc.09G261800' => 'tca', 'Thecc.09G291400' => 'tca', 'Thhalv10003028m.g' => 'esa', 'Thhalv10007886m.g' => 'esa', 'Thhalv10016085m.g' => 'esa', 'Thhalv10016681m.g' => 'esa', 'Thhalv10020951m.g' => 'esa', 'TPR.G15598' => 'tpr', 'TPR.G29305' => 'tpr', 'TPR.G32395' => 'tpr', 'TPR.G36998' => 'tpr', 'TPR.G4227' => 'tpr', 'TWI18G1433' => 'twi', 'TWI31G0755' => 'twi', 'TWI38G0912' => 'twi', 'TWI75G1097' => 'twi', 'TWI75G1619' => 'twi', 'TWI79G1336' => 'twi', 'unitig_0.g943' => 'ugi', 'unitig_0.g944' => 'ugi', 'unitig_22.g6646' => 'ugi', 'unitig_37.g12681' => 'ugi', 'unitig_8.g3290' => 'ugi', 'vmacro03278' => 'vma', 'vmacro12197' => 'vma', 'vmacro14478' => 'vma', 'vmacro15787' => 'vma', 'vmacro15789' => 'vma', 'vmacro15790' => 'vma', 'vmacro15806' => 'vma', 'vmacro22907' => 'vma', 'vmacro22908' => 'vma', 'vmacro22909' => 'vma', 'vmacro23108' => 'vma', 'VMungo0540G0540' => 'vmu', 'VMungo0540G2468' => 'vmu', 'VMungo1080G0390' => 'vmu', 'VMungo1080G1165' => 'vmu', 'VMungo1127G0170' => 'vmu', 'VMungo1127G2099' => 'vmu', 'VMungo1215G3013' => 'vmu', 'Zm00001eb013110' => 'zma', 'Zm00001eb084260' => 'zma', 'Zm00001eb096110' => 'zma', 'Zm00001eb217510' => 'zma', 'Zm00001eb322550' => 'zma', 'Zm00001eb390770' => 'zma', 'Zm00001eb397170' => 'zma', 'Zm00001eb404610' => 'zma', 'Zm00001eb421790' => 'zma' ) $gf_id = 'HOM05D000911' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000911' ) $data_identifier = 'HOM05D000911' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 16, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 5, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 6, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 8, 'nnu' => (int) 16, 'oeu' => (int) 8, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 5, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 16, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421790' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000911', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27780' => 'bna', 'A03p35380' => 'bna', 'A04p21160' => 'bna', 'A05p40570' => 'bna', 'A06p26900' => 'bna', 'A08p33230' => 'bna', 'A09p65960' => 'bna', 'A10p18290' => 'bna', 'Aa31LG1G12990' => 'aar', 'Aa31LG1G2980' => 'aar', 'Aa31LG4G14320' => 'aar', 'Aa31LG7G11800' => 'aar', 'Aa31sc36G50' => 'aar', 'Aa31sc36G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3721' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5459' => 'aag', 'Actinidia03028' => 'ach', 'Actinidia03753' => 'ach', 'Actinidia04187' => 'ach', 'Actinidia05509' => 'ach', 'Actinidia24180' => 'ach', 'Actinidia26906' => 'ach', 'Actinidia37097' => 'ach', 'Actinidia38249' => 'ach', 'Ah.01g003470' => 'amhyb', 'Ah.01g004580' => 'amhyb', 'Ah.01g014850' => 'amhyb', 'Ah.01g016830' => 'amhyb', 'Ah.14g088000' => 'amhyb', 'AL1G22980' => 'aly', 'AL3G18990' => 'aly', 'AL4G22440' => 'aly', 'AL4G33180' => 'aly', 'AL5G22920' => 'aly', 'AL6G33660' => 'aly', 'AL8G20720' => 'aly', 'Aqoxy1G00935' => 'aox', 'Aqoxy1G02094' => 'aox', 'Aqoxy2G01239' => 'aox', 'Aqoxy4G01870' => 'aox', 'Aqoxy7G00450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.36ZVTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71EM27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5D6C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH3WRE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3NCM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RIM768' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YB5YRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z36GDV' => 'arhy', 'AT1G08250' => 'ath', 'AT1G11790' => 'ath', 'AT2G27820' => 'ath', 'AT3G07630' => 'ath', 'AT3G44720' => 'ath', 'AT5G22630' => 'ath', 'ATR0693G304' => 'atr', 'ATR0794G109' => 'atr', 'ATR0820G120' => 'atr', 'ATR1159G064' => 'atr', 'Atru.chr10.2239' => 'acertr', 'Atru.chr3.3371' => 'acertr', 'Atru.chr6.3202' => 'acertr', 'AUR62006499' => 'cqu', 'AUR62012718' => 'cqu', 'AUR62021938' => 'cqu', 'AUR62023932' => 'cqu', 'AUR62025034' => 'cqu', 'AUR62025035' => 'cqu', 'AUR62038307' => 'cqu', 'AUR62043466' => 'cqu', 'BcaB02g10748' => 'bca', 'BcaB03g13231' => 'bca', 'BcaB03g14689' => 'bca', 'BcaB05g22716' => 'bca', 'BcaB06g28172' => 'bca', 'BcaB08g36413' => 'bca', 'BcaC01g02186' => 'bca', 'BcaC01g04272' => 'bca', 'BcaC02g08080' => 'bca', 'BcaC02g08227' => 'bca', 'BcaC03g13901' => 'bca', 'BcaC04g19593' => 'bca', 'BcaC04g20874' => 'bca', 'BcaC05g29557' => 'bca', 'BcaC06g35505' => 'bca', 'BcaC07g41954' => 'bca', 'BcaC07g41955' => 'bca', 'BcaC07g41956' => 'bca', 'BcaC07g42519' => 'bca', 'BcaC07g42520' => 'bca', 'BcaC07g42523' => 'bca', 'BcaC07g42524' => 'bca', 'BcaC07g42525' => 'bca', 'BcaC08g47480' => 'bca', 'BcaC08g47481' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00530' => 'bna', 'BolC2t07178H' => 'bol', 'BolC3t16567H' => 'bol', 'BolC4t27234H' => 'bol', 'BolC5t29728H' => 'bol', 'BolC5t34622H' => 'bol', 'BolC6t40321H' => 'bol', 'BolC7t42028H' => 'bol', 'BolC8t49125H' => 'bol', 'BolC8t52538H' => 'bol', 'BolC8t52539H' => 'bol', 'BolC9t56681H' => 'bol', 'BolC9t58266H' => 'bol', 'BolSC21t60294H' => 'bol', 'BraA02t05670Z' => 'bra', 'BraA03t12716Z' => 'bra', 'BraA04t17685Z' => 'bra', 'BraA05t22788Z' => 'bra', 'BraA06t24032Z' => 'bra', 'BraA06t25625Z' => 'bra', 'BraA07t27930Z' => 'bra', 'BraA08t35242Z' => 'bra', 'BraA09t38609Z' => 'bra', 'BraA10t43905Z' => 'bra', 'C02p11060' => 'bna', 'C03p42990' => 'bna', 'C03p67310' => 'bna', 'C04p56990' => 'bna', 'C04p58660' => 'bna', 'C05p09890' => 'bna', 'C05p59680' => 'bna', 'C06p19830' => 'bna', 'C06p53040' => 'bna', 'C07p15230' => 'bna', 'C08p50070' => 'bna', 'C08p50090' => 'bna', 'C09p38330' => 'bna', 'C09p53940' => 'bna', 'CAN.G1014.1' => 'can', 'CAN.G644.30' => 'can', 'CAN.G84.47' => 'can', 'CAN.G919.8' => 'can', 'CANSAT54G0113' => 'cansat', 'CANSAT54G1286' => 'cansat', 'CANSAT64G1020' => 'cansat', 'CARHR008080' => 'chi', 'CARHR008090' => 'chi', 'CARHR012130' => 'chi', 'CARHR038390' => 'chi', 'CARHR082330' => 'chi', 'CARHR120520' => 'chi', 'CARHR151470' => 'chi', 'CARHR190950' => 'chi', 'Carub.0001s0760' => 'cru', 'Carub.0001s1146' => 'cru', 'Carub.0003s0721' => 'cru', 'Carub.0004s0858' => 'cru', 'Carub.0005s1040' => 'cru', 'Carub.0006s2035' => 'cru', 'Carub.0015s0005' => 'cru', 'Ca_01607_v3' => 'car', 'Ca_01677_v3' => 'car', 'Ca_06087_v3' => 'car', 'Ca_19238_v3' => 'car', 'Ca_19373_v3' => 'car', 'Ca_21079_v3' => 'car', 'CBR_g54016' => 'cbr', 'CBR_g54018' => 'cbr', 'CBR_g54020' => 'cbr', 'Cc01_g09780' => 'ccan', 'Cc01_g11680' => 'ccan', 'Cc02_g15610' => 'ccan', 'Cc05_g04350' => 'ccan', 'Cc09_g01580' => 'ccan', 'CDE01G0795' => 'cde', 'CDE02G2024' => 'cde', 'CDE02G2260' => 'cde', 'CDE02G4561' => 'cde', 'CDE05G2733' => 'cde', 'CDE05G3422' => 'cde', 'CDE06G2003' => 'cde', 'CDE08G0576' => 'cde', 'CDE09G0048' => 'cde', 'CDE11G0805' => 'cde', 'Cfa003644' => 'cfa', 'Cfa006290' => 'cfa', 'Cfa010080' => 'cfa', 'Cfa011376' => 'cfa', 'Cfa011576' => 'cfa', 'Cfa011577' => 'cfa', 'Cfa014389' => 'cfa', 'Ciclev10006044m.g' => 'ccl', 'Ciclev10006954m.g' => 'ccl', 'Ciclev10015131m.g' => 'ccl', 'Ciclev10015580m.g' => 'ccl', 'Ciclev10028359m.g' => 'ccl', 'Ciclev10028573m.g' => 'ccl', 'CiPaw.03G159300' => 'cil', 'CiPaw.04G115100' => 'cil', 'CiPaw.09G092800' => 'cil', 'CiPaw.10G071800' => 'cil', 'CiPaw.13G105800' => 'cil', 'CiPaw.13G141000' => 'cil', 'CiPaw.14G103400' => 'cil', 'ClCG01G012700' => 'cla', 'ClCG01G012720' => 'cla', 'ClCG01G021920' => 'cla', 'ClCG02G008870' => 'cla', 'ClCG02G020840' => 'cla', 'ClCG02G021930' => 'cla', 'COL.COLO4_19302' => 'col', 'COL.COLO4_25262' => 'col', 'COL.COLO4_31788' => 'col', 'Cpa.g.c34684' => 'cpa', 'Cpa.g.c36520.1' => 'cpa', 'Cpa.g.c45626' => 'cpa', 'Cpa.g.sc121.17' => 'cpa', 'Cpa.g.sc13.22' => 'cpa', 'Cpa.g.sc87.88' => 'cpa', 'Cre06.g261800' => 'cre', 'CsaV3_1G014500' => 'csa', 'CsaV3_1G014510' => 'csa', 'CsaV3_2G034880' => 'csa', 'CsaV3_6G014760' => 'csa', 'CsaV3_6G021500' => 'csa', 'CsaV3_6G048980' => 'csa', 'CSS0002511' => 'camsi', 'CSS0007556' => 'camsi', 'CSS0008532' => 'camsi', 'CSS0009709' => 'camsi', 'CSS0010486' => 'camsi', 'CSS0016768' => 'camsi', 'CSS0023512' => 'camsi', 'CSS0025341' => 'camsi', 'CSS0027999' => 'camsi', 'CSS0028944' => 'camsi', 'CSS0032292' => 'camsi', 'CSS0032464' => 'camsi', 'CSS0037153' => 'camsi', 'CSS0039256' => 'camsi', 'CSS0048392' => 'camsi', 'CSS0050458' => 'camsi', 'DCAR_004224' => 'dca', 'DCAR_006147' => 'dca', 'DCAR_006465' => 'dca', 'DCAR_008159' => 'dca', 'DCAR_012164' => 'dca', 'DCAR_019764' => 'dca', 'Dinv05418' => 'din', 'Dinv10839' => 'din', 'Dinv12521' => 'din', 'Dinv13900' => 'din', 'Dinv29426' => 'din', 'Duzib150G0263' => 'dzi', 'Duzib168G1178' => 'dzi', 'Duzib168G1924' => 'dzi', 'Duzib170G0299' => 'dzi', 'Duzib170G0813' => 'dzi', 'Duzib235G1128' => 'dzi', 'Duzib248G1060' => 'dzi', 'ECA232G1910' => 'eca', 'ECA233G4621' => 'eca', 'ECA238G1216' => 'eca', 'ECA238G1784' => 'eca', 'ECA248G1242' => 'eca', 'EL10Ac8g20071' => 'bvu', 'EL10Ac9g21086' => 'bvu', 'EL10Ac9g22407' => 'bvu', 'EL10Ac9g22412' => 'bvu', 'Eucgr.A01119' => 'egr', 'Eucgr.E04043' => 'egr', 'Eucgr.J00428' => 'egr', 'Eucgr.J00958' => 'egr', 'FAN11G3091' => 'fan', 'FAN11G3651' => 'fan', 'FAN16G2566' => 'fan', 'FAN21G3155' => 'fan', 'FAN21G3400' => 'fan', 'FAN21G3543' => 'fan', 'FAN25G0234' => 'fan', 'FAN25G1422' => 'fan', 'FAN25G3392' => 'fan', 'FvH4_3g01940' => 'fve', 'FvH4_3g29870' => 'fve', 'FvH4_3g33680' => 'fve', 'Glyma.09G004200' => 'gma', 'Glyma.11G151288' => 'gma', 'Glyma.11G189100' => 'gma', 'Glyma.12G072500' => 'gma', 'Glyma.12G085500' => 'gma', 'Glyma.12G181800' => 'gma', 'Glyma.12G193000' => 'gma', 'Glyma.13G309300' => 'gma', 'Glyma.13G319000' => 'gma', 'Glyma.17G012600' => 'gma', 'Gohir.A06G148600' => 'ghi', 'Gohir.A07G115800' => 'ghi', 'Gohir.A08G003600' => 'ghi', 'Gohir.A09G093300' => 'ghi', 'Gohir.A09G105400' => 'ghi', 'Gohir.A09G105500' => 'ghi', 'Gohir.D06G154600' => 'ghi', 'Gohir.D07G120200' => 'ghi', 'Gohir.D08G013900' => 'ghi', 'Gohir.D09G093100' => 'ghi', 'Gohir.D09G102200' => 'ghi', 'Gohir.D09G102300' => 'ghi', 'Gorai.001G129400' => 'gra', 'Gorai.004G008200' => 'gra', 'Gorai.006G109800' => 'gra', 'Gorai.006G119500' => 'gra', 'Gorai.006G121300' => 'gra', 'Gorai.010G180700' => 'gra', 'GSVIVG01012716001' => 'vvi', 'GSVIVG01025118001' => 'vvi', 'GSVIVG01030439001' => 'vvi', 'GSVIVG01031397001' => 'vvi', 'HanXRQChr01g0004201' => 'han', 'HanXRQChr02g0054941' => 'han', 'HanXRQChr05g0141811' => 'han', 'HanXRQChr07g0197751' => 'han', 'HanXRQChr11g0346691' => 'han', 'HanXRQChr13g0396971' => 'han', 'HanXRQChr14g0432951' => 'han', 'HanXRQChr14g0452001' => 'han', 'HanXRQChr15g0496681' => 'han', 'HanXRQChr17g0557491' => 'han', 'HanXRQChr17g0557501' => 'han', 'Haze_06809' => 'cav', 'Haze_12852' => 'cav', 'Haze_15850' => 'cav', 'Haze_23446' => 'cav', 'Haze_23942' => 'cav', 'Haze_23943' => 'cav', 'Hma1.2p1_0091F.1_g046450' => 'hma', 'Hma1.2p1_0128F.1_g059910' => 'hma', 'Hma1.2p1_0249F.1_g102260' => 'hma', 'Hma1.2p1_0453F.1_g156190' => 'hma', 'Hma1.2p1_0695F.1_g204380' => 'hma', 'Hma1.2p1_0749F.1_g212650' => 'hma', 'Hma1.2p1_2156F.1_g315420' => 'hma', 'Hma1.2p1_2686F.1_g326940' => 'hma', 'HPP92_006428' => 'vpl', 'HPP92_012069' => 'vpl', 'HPP92_014129' => 'vpl', 'HPP92_014133' => 'vpl', 'HPP92_017315' => 'vpl', 'HPP92_026445' => 'vpl', 'HPP92_026446' => 'vpl', 'Hund00774' => 'sun', 'Hund07682' => 'sun', 'Hund21413' => 'sun', 'Hund23462' => 'sun', 'Hund23463' => 'sun', 'Lalb_Chr03g0027911' => 'lal', 'Lalb_Chr13g0304271' => 'lal', 'Lalb_Chr19g0137471' => 'lal', 'Lalb_Chr22g0350651' => 'lal', 'Lalb_Chr24g0395151' => 'lal', 'Lj1A1231T40' => 'lonja', 'Lj1A221T48' => 'lonja', 'Lj1C924T12' => 'lonja', 'Lj2C993G6' => 'lonja', 'Lj3g0005790' => 'lja', 'Lj3g0015432' => 'lja', 'Lj3g0017722' => 'lja', 'Lj3g0018497' => 'lja', 'Lj4g0025071' => 'lja', 'Lsat_1_v5_gn_1_129680' => 'lsa', 'Lsat_1_v5_gn_2_25321' => 'lsa', 'Lsat_1_v5_gn_2_95461' => 'lsa', 'Lsat_1_v5_gn_4_159620' => 'lsa', 'Lsat_1_v5_gn_6_41301' => 'lsa', 'Lsat_1_v5_gn_6_74660' => 'lsa', 'Lsat_1_v5_gn_7_11520' => 'lsa', 'Lsat_1_v5_gn_9_67680' => 'lsa', 'Manes.04G008300' => 'mes', 'Manes.04G008400' => 'mes', 'Manes.04G026500' => 'mes', 'Manes.10G135300' => 'mes', 'Manes.11G157300' => 'mes', 'Manes.12G074000' => 'mes', 'Manes.16G006200' => 'mes', 'Manes.17G026400' => 'mes', 'Mapoly0024s0086' => 'mpo', 'Mapoly0024s0087' => 'mpo', 'Mapoly0071s0057' => 'mpo', 'Mapoly0204s0012' => 'mpo', 'MBI04_g37681_MAGBIO' => 'mbi', 'MBI05_g17779_MAGBIO' => 'mbi', 'MBI12_g31184_MAGBIO' => 'mbi', 'MBI17_g11083_MAGBIO' => 'mbi', 'MBI18_g03883_MAGBIO' => 'mbi', 'MBI18_g28940_MAGBIO' => 'mbi', 'MCO01G690' => 'mco', 'MD03G1109900' => 'mdo', 'MD03G1134800' => 'mdo', 'MD05G1348000' => 'mdo', 'MD10G1322400' => 'mdo', 'MD11G1123300' => 'mdo', 'MD11G1157600' => 'mdo', 'Medtr2g084875' => 'mtr', 'Medtr2g088130' => 'mtr', 'Medtr4g055310' => 'mtr', 'Medtr4g061070' => 'mtr', 'Medtr4g132250' => 'mtr', 'MELO3C004795.2' => 'cme', 'MELO3C004797.2' => 'cme', 'MELO3C007396.2' => 'cme', 'MELO3C019277.2' => 'cme', 'MELO3C021449.2' => 'cme', 'MELO3C025736.2' => 'cme', 'Migut.D02175' => 'egut', 'Migut.H01573' => 'egut', 'Migut.M01327' => 'egut', 'Migut.N02513' => 'egut', 'MSTRG.14638' => 'ama', 'MSTRG.18632' => 'ama', 'MSTRG.7203' => 'ama', 'Nitab4.5_0000533g0140' => 'nta', 'Nitab4.5_0000888g0150' => 'nta', 'Nitab4.5_0001453g0040' => 'nta', 'Nitab4.5_0002827g0090' => 'nta', 'Nitab4.5_0003082g0040' => 'nta', 'Nitab4.5_0007799g0040' => 'nta', 'Nitab4.5_0008983g0010' => 'nta', 'Nitab4.5_0009017g0020' => 'nta', 'Nn1g02132' => 'nnu', 'Nn1g03492' => 'nnu', 'Nn1g03493' => 'nnu', 'Nn1g03494' => 'nnu', 'Nn1g07164' => 'nnu', 'Nn1g07291' => 'nnu', 'Nn2g10655' => 'nnu', 'Nn2g11652' => 'nnu', 'Nn2g14008' => 'nnu', 'Nn3g17476' => 'nnu', 'Nn3g17477' => 'nnu', 'Nn4g22370' => 'nnu', 'Nn4g25255' => 'nnu', 'Nn5g27755' => 'nnu', 'Nn6g34260' => 'nnu', 'Nn6g35041' => 'nnu', 'Oeu005924.1' => 'oeu', 'Oeu008383.1' => 'oeu', 'Oeu014928.1' => 'oeu', 'Oeu019889.1' => 'oeu', 'Oeu022271.1' => 'oeu', 'Oeu025271.1' => 'oeu', 'Oeu036302.1' => 'oeu', 'Oeu044100.1' => 'oeu', 'Os01g0528300' => 'osa', 'Os03g0286200' => 'osa', 'Os04g0406600' => 'osa', 'Os07g0512000' => 'osa', 'Os07g0694600' => 'osa', 'Os08g0411000' => 'osa', 'Os09g0565700' => 'osa', 'Os09g0566050' => 'osa', 'Os10g0523700' => 'osa', 'Peaxi162Scf00002g00514' => 'pax', 'Peaxi162Scf00047g01817' => 'pax', 'Peaxi162Scf00114g00001' => 'pax', 'Peaxi162Scf00147g00613' => 'pax', 'Peaxi162Scf00389g00425' => 'pax', 'PGR042G1139' => 'pgr', 'PGR042G3273' => 'pgr', 'PGR102G2180' => 'pgr', 'PGR119G0234' => 'pgr', 'PGR119G0668' => 'pgr', 'PGSC0003DMG400007122' => 'stu', 'PGSC0003DMG400016478' => 'stu', 'PGSC0003DMG400025374' => 'stu', 'PGSC0003DMG400026536' => 'stu', 'Phvul.003G079600' => 'pvu', 'Phvul.005G115600' => 'pvu', 'Phvul.005G127100' => 'pvu', 'Phvul.006G149500' => 'pvu', 'Phvul.006G149600' => 'pvu', 'Phvul.011G071800' => 'pvu', 'Phvul.011G090400' => 'pvu', 'Potri.004G013400' => 'ptr', 'Potri.004G188100' => 'ptr', 'Potri.008G195500' => 'ptr', 'Potri.009G148800' => 'ptr', 'Potri.011G004700' => 'ptr', 'Pp3c17_22810' => 'ppa', 'Pp3c18_4480' => 'ppa', 'Pp3c19_13030' => 'ppa', 'Pp3c1_33620' => 'ppa', 'Pp3c2_9380' => 'ppa', 'PRCOL_00001023' => 'pco', 'Prupe.3G216300' => 'ppe', 'Prupe.4G019500' => 'ppe', 'Prupe.6G092500' => 'ppe', 'Prupe.6G119200' => 'ppe', 'Psat0s1945g0080' => 'psa', 'Psat0s4167g0040' => 'psa', 'Psat1g185800' => 'psa', 'Psat4g006440' => 'psa', 'Psat4g006480' => 'psa', 'Psat4g168120' => 'psa', 'Psat5g255680' => 'psa', 'Psat5g261760' => 'psa', 'Psat7g222120' => 'psa', 'PSO063G7252' => 'pso', 'PSO170G4778' => 'pso', 'PSO210G2249' => 'pso', 'PSO339G2411' => 'pso', 'PSO339G2457' => 'pso', 'PSO339G2854' => 'pso', 'PSO339G4288' => 'pso', 'PSO339G4615' => 'pso', 'PSO384G2796' => 'pso', 'PSO384G2940' => 'pso', 'PSO384G4227' => 'pso', 'PSO478G1425' => 'pso', 'PSO541G3863' => 'pso', 'PSO675G0507' => 'pso', 'PSO782G0338' => 'pso', 'PSO832G0644' => 'pso', 'QL01p013664' => 'qlo', 'QL01p036598' => 'qlo', 'QL05p072984' => 'qlo', 'QL08p005768' => 'qlo', 'QL08p032743' => 'qlo', 'QL93p0073_0439' => 'qlo', 'QL93p0073_0444' => 'qlo', 'RcHm_v2.0_Chr5g0002851' => 'rch', 'RcHm_v2.0_Chr5g0055201' => 'rch', 'RcHm_v2.0_Chr5g0061191' => 'rch', 'RcHm_v2.0_Chr7g0203231' => 'rch', 'Rhsim01G0208100' => 'rsi', 'Rhsim01G0208200' => 'rsi', 'Rhsim02G0106500' => 'rsi', 'Rhsim03G0107900' => 'rsi', 'Rhsim06G0163400' => 'rsi', 'Rhsim13G0105200' => 'rsi', 'Sabra04G0006300' => 'sbr', 'Sabra04G0127000' => 'sbr', 'Sabra08G0148700' => 'sbr', 'Sabra09G0117400' => 'sbr', 'SalBow1G3326' => 'sbo', 'SalBow3G3228' => 'sbo', 'SalBow6G1634' => 'sbo', 'SalBow6G3603' => 'sbo', 'SalBow6G5266' => 'sbo', 'SalBow7G2265' => 'sbo', 'SalBow8G0850' => 'sbo', 'SalBow8G2592' => 'sbo', 'Sc05g0009240' => 'sci', 'Sc12g0002300' => 'sci', 'Sc21g0000100' => 'sci', 'Sc21g0004720' => 'sci', 'Sed0002949' => 'sed', 'Sed0004114' => 'sed', 'Sed0004306' => 'sed', 'Sed0006172' => 'sed', 'Sed0008413' => 'sed', 'Sed0013809' => 'sed', 'Sed0019556' => 'sed', 'SEGI_03570' => 'sgi', 'SEGI_07859' => 'sgi', 'SEGI_15042' => 'sgi', 'SEGI_16263' => 'sgi', 'SEGI_16552' => 'sgi', 'SEGI_24331' => 'sgi', 'SEGI_27316' => 'sgi', 'SEGI_29521' => 'sgi', 'SEGI_41342' => 'sgi', 'SGA_v2.0_scaffold27G11617' => 'sas', 'SGA_v2.0_scaffold316G48428' => 'sas', 'SGA_v2.0_scaffold49G18261' => 'sas', 'SGA_v2.0_scaffold7G03831' => 'sas', 'SGA_v2.0_scaffold93G28359' => 'sas', 'SHI02210' => 'shi', 'SHI06028' => 'shi', 'SHI06321' => 'shi', 'SMO111G0012' => 'smo', 'SMO228G0080' => 'smo', 'SMO356G0756' => 'smo', 'Solyc02g080620.3' => 'sly', 'Solyc06g074530.1' => 'sly', 'Solyc11g066890.1' => 'sly', 'Solyc11g072520.3' => 'sly', 'Sopen02g025330' => 'spe', 'Sopen06g031000' => 'spe', 'Sopen09g008240' => 'spe', 'Sopen09g025210' => 'spe', 'Sopen11g026600' => 'spe', 'Sopen11g030170' => 'spe', 'Sp1g10420' => 'spa', 'Sp3g06570' => 'spa', 'Sp4g10660' => 'spa', 'Sp5g16460' => 'spa', 'Sp6g22710' => 'spa', 'TAR365G0112' => 'tar', 'TAR369G0717' => 'tar', 'TAR374G0976' => 'tar', 'TAR623G1128' => 'tar', 'TAR626G1937' => 'tar', 'TAR627G0123' => 'tar', 'TAR628G0305' => 'tar', 'TAR636G1176' => 'tar', 'TAR636G2442' => 'tar', 'THA.LOC104800556' => 'tha', 'THA.LOC104809501' => 'tha', 'THA.LOC104815126' => 'tha', 'THA.LOC104815732' => 'tha', 'THA.LOC104823528' => 'tha', 'Thecc.02G365600' => 'tca', 'Thecc.06G222300' => 'tca', 'Thecc.09G261800' => 'tca', 'Thecc.09G291400' => 'tca', 'Thhalv10003028m.g' => 'esa', 'Thhalv10007886m.g' => 'esa', 'Thhalv10016085m.g' => 'esa', 'Thhalv10016681m.g' => 'esa', 'Thhalv10020951m.g' => 'esa', 'TPR.G15598' => 'tpr', 'TPR.G29305' => 'tpr', 'TPR.G32395' => 'tpr', 'TPR.G36998' => 'tpr', 'TPR.G4227' => 'tpr', 'TWI18G1433' => 'twi', 'TWI31G0755' => 'twi', 'TWI38G0912' => 'twi', 'TWI75G1097' => 'twi', 'TWI75G1619' => 'twi', 'TWI79G1336' => 'twi', 'unitig_0.g943' => 'ugi', 'unitig_0.g944' => 'ugi', 'unitig_22.g6646' => 'ugi', 'unitig_37.g12681' => 'ugi', 'unitig_8.g3290' => 'ugi', 'vmacro03278' => 'vma', 'vmacro12197' => 'vma', 'vmacro14478' => 'vma', 'vmacro15787' => 'vma', 'vmacro15789' => 'vma', 'vmacro15790' => 'vma', 'vmacro15806' => 'vma', 'vmacro22907' => 'vma', 'vmacro22908' => 'vma', 'vmacro22909' => 'vma', 'vmacro23108' => 'vma', 'VMungo0540G0540' => 'vmu', 'VMungo0540G2468' => 'vmu', 'VMungo1080G0390' => 'vmu', 'VMungo1080G1165' => 'vmu', 'VMungo1127G0170' => 'vmu', 'VMungo1127G2099' => 'vmu', 'VMungo1215G3013' => 'vmu', 'Zm00001eb013110' => 'zma', 'Zm00001eb084260' => 'zma', 'Zm00001eb096110' => 'zma', 'Zm00001eb217510' => 'zma', 'Zm00001eb322550' => 'zma', 'Zm00001eb390770' => 'zma', 'Zm00001eb397170' => 'zma', 'Zm00001eb404610' => 'zma', 'Zm00001eb421790' => 'zma' ), 'gf_id' => 'HOM05D000911', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000911' ), 'data_identifier' => 'HOM05D000911', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000911', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27780' => 'bna', 'A03p35380' => 'bna', 'A04p21160' => 'bna', 'A05p40570' => 'bna', 'A06p26900' => 'bna', 'A08p33230' => 'bna', 'A09p65960' => 'bna', 'A10p18290' => 'bna', 'Aa31LG1G12990' => 'aar', 'Aa31LG1G2980' => 'aar', 'Aa31LG4G14320' => 'aar', 'Aa31LG7G11800' => 'aar', 'Aa31sc36G50' => 'aar', 'Aa31sc36G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3721' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5459' => 'aag', 'Actinidia03028' => 'ach', 'Actinidia03753' => 'ach', 'Actinidia04187' => 'ach', 'Actinidia05509' => 'ach', 'Actinidia24180' => 'ach', 'Actinidia26906' => 'ach', 'Actinidia37097' => 'ach', 'Actinidia38249' => 'ach', 'Ah.01g003470' => 'amhyb', 'Ah.01g004580' => 'amhyb', 'Ah.01g014850' => 'amhyb', 'Ah.01g016830' => 'amhyb', 'Ah.14g088000' => 'amhyb', 'AL1G22980' => 'aly', 'AL3G18990' => 'aly', 'AL4G22440' => 'aly', 'AL4G33180' => 'aly', 'AL5G22920' => 'aly', 'AL6G33660' => 'aly', 'AL8G20720' => 'aly', 'Aqoxy1G00935' => 'aox', 'Aqoxy1G02094' => 'aox', 'Aqoxy2G01239' => 'aox', 'Aqoxy4G01870' => 'aox', 'Aqoxy7G00450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.36ZVTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71EM27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5D6C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH3WRE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3NCM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RIM768' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YB5YRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z36GDV' => 'arhy', 'AT1G08250' => 'ath', 'AT1G11790' => 'ath', 'AT2G27820' => 'ath', 'AT3G07630' => 'ath', 'AT3G44720' => 'ath', 'AT5G22630' => 'ath', 'ATR0693G304' => 'atr', 'ATR0794G109' => 'atr', 'ATR0820G120' => 'atr', 'ATR1159G064' => 'atr', 'Atru.chr10.2239' => 'acertr', 'Atru.chr3.3371' => 'acertr', 'Atru.chr6.3202' => 'acertr', 'AUR62006499' => 'cqu', 'AUR62012718' => 'cqu', 'AUR62021938' => 'cqu', 'AUR62023932' => 'cqu', 'AUR62025034' => 'cqu', 'AUR62025035' => 'cqu', 'AUR62038307' => 'cqu', 'AUR62043466' => 'cqu', 'BcaB02g10748' => 'bca', 'BcaB03g13231' => 'bca', 'BcaB03g14689' => 'bca', 'BcaB05g22716' => 'bca', 'BcaB06g28172' => 'bca', 'BcaB08g36413' => 'bca', 'BcaC01g02186' => 'bca', 'BcaC01g04272' => 'bca', 'BcaC02g08080' => 'bca', 'BcaC02g08227' => 'bca', 'BcaC03g13901' => 'bca', 'BcaC04g19593' => 'bca', 'BcaC04g20874' => 'bca', 'BcaC05g29557' => 'bca', 'BcaC06g35505' => 'bca', 'BcaC07g41954' => 'bca', 'BcaC07g41955' => 'bca', 'BcaC07g41956' => 'bca', 'BcaC07g42519' => 'bca', 'BcaC07g42520' => 'bca', 'BcaC07g42523' => 'bca', 'BcaC07g42524' => 'bca', 'BcaC07g42525' => 'bca', 'BcaC08g47480' => 'bca', 'BcaC08g47481' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00530' => 'bna', 'BolC2t07178H' => 'bol', 'BolC3t16567H' => 'bol', 'BolC4t27234H' => 'bol', 'BolC5t29728H' => 'bol', 'BolC5t34622H' => 'bol', 'BolC6t40321H' => 'bol', 'BolC7t42028H' => 'bol', 'BolC8t49125H' => 'bol', 'BolC8t52538H' => 'bol', 'BolC8t52539H' => 'bol', 'BolC9t56681H' => 'bol', 'BolC9t58266H' => 'bol', 'BolSC21t60294H' => 'bol', 'BraA02t05670Z' => 'bra', 'BraA03t12716Z' => 'bra', 'BraA04t17685Z' => 'bra', 'BraA05t22788Z' => 'bra', 'BraA06t24032Z' => 'bra', 'BraA06t25625Z' => 'bra', 'BraA07t27930Z' => 'bra', 'BraA08t35242Z' => 'bra', 'BraA09t38609Z' => 'bra', 'BraA10t43905Z' => 'bra', 'C02p11060' => 'bna', 'C03p42990' => 'bna', 'C03p67310' => 'bna', 'C04p56990' => 'bna', 'C04p58660' => 'bna', 'C05p09890' => 'bna', 'C05p59680' => 'bna', 'C06p19830' => 'bna', 'C06p53040' => 'bna', 'C07p15230' => 'bna', 'C08p50070' => 'bna', 'C08p50090' => 'bna', 'C09p38330' => 'bna', 'C09p53940' => 'bna', 'CAN.G1014.1' => 'can', 'CAN.G644.30' => 'can', 'CAN.G84.47' => 'can', 'CAN.G919.8' => 'can', 'CANSAT54G0113' => 'cansat', 'CANSAT54G1286' => 'cansat', 'CANSAT64G1020' => 'cansat', 'CARHR008080' => 'chi', 'CARHR008090' => 'chi', 'CARHR012130' => 'chi', 'CARHR038390' => 'chi', 'CARHR082330' => 'chi', 'CARHR120520' => 'chi', 'CARHR151470' => 'chi', 'CARHR190950' => 'chi', 'Carub.0001s0760' => 'cru', 'Carub.0001s1146' => 'cru', 'Carub.0003s0721' => 'cru', 'Carub.0004s0858' => 'cru', 'Carub.0005s1040' => 'cru', 'Carub.0006s2035' => 'cru', 'Carub.0015s0005' => 'cru', 'Ca_01607_v3' => 'car', 'Ca_01677_v3' => 'car', 'Ca_06087_v3' => 'car', 'Ca_19238_v3' => 'car', 'Ca_19373_v3' => 'car', 'Ca_21079_v3' => 'car', 'CBR_g54016' => 'cbr', 'CBR_g54018' => 'cbr', 'CBR_g54020' => 'cbr', 'Cc01_g09780' => 'ccan', 'Cc01_g11680' => 'ccan', 'Cc02_g15610' => 'ccan', 'Cc05_g04350' => 'ccan', 'Cc09_g01580' => 'ccan', 'CDE01G0795' => 'cde', 'CDE02G2024' => 'cde', 'CDE02G2260' => 'cde', 'CDE02G4561' => 'cde', 'CDE05G2733' => 'cde', 'CDE05G3422' => 'cde', 'CDE06G2003' => 'cde', 'CDE08G0576' => 'cde', 'CDE09G0048' => 'cde', 'CDE11G0805' => 'cde', 'Cfa003644' => 'cfa', 'Cfa006290' => 'cfa', 'Cfa010080' => 'cfa', 'Cfa011376' => 'cfa', 'Cfa011576' => 'cfa', 'Cfa011577' => 'cfa', 'Cfa014389' => 'cfa', 'Ciclev10006044m.g' => 'ccl', 'Ciclev10006954m.g' => 'ccl', 'Ciclev10015131m.g' => 'ccl', 'Ciclev10015580m.g' => 'ccl', 'Ciclev10028359m.g' => 'ccl', 'Ciclev10028573m.g' => 'ccl', 'CiPaw.03G159300' => 'cil', 'CiPaw.04G115100' => 'cil', 'CiPaw.09G092800' => 'cil', 'CiPaw.10G071800' => 'cil', 'CiPaw.13G105800' => 'cil', 'CiPaw.13G141000' => 'cil', 'CiPaw.14G103400' => 'cil', 'ClCG01G012700' => 'cla', 'ClCG01G012720' => 'cla', 'ClCG01G021920' => 'cla', 'ClCG02G008870' => 'cla', 'ClCG02G020840' => 'cla', 'ClCG02G021930' => 'cla', 'COL.COLO4_19302' => 'col', 'COL.COLO4_25262' => 'col', 'COL.COLO4_31788' => 'col', 'Cpa.g.c34684' => 'cpa', 'Cpa.g.c36520.1' => 'cpa', 'Cpa.g.c45626' => 'cpa', 'Cpa.g.sc121.17' => 'cpa', 'Cpa.g.sc13.22' => 'cpa', 'Cpa.g.sc87.88' => 'cpa', 'Cre06.g261800' => 'cre', 'CsaV3_1G014500' => 'csa', 'CsaV3_1G014510' => 'csa', 'CsaV3_2G034880' => 'csa', 'CsaV3_6G014760' => 'csa', 'CsaV3_6G021500' => 'csa', 'CsaV3_6G048980' => 'csa', 'CSS0002511' => 'camsi', 'CSS0007556' => 'camsi', 'CSS0008532' => 'camsi', 'CSS0009709' => 'camsi', 'CSS0010486' => 'camsi', 'CSS0016768' => 'camsi', 'CSS0023512' => 'camsi', 'CSS0025341' => 'camsi', 'CSS0027999' => 'camsi', 'CSS0028944' => 'camsi', 'CSS0032292' => 'camsi', 'CSS0032464' => 'camsi', 'CSS0037153' => 'camsi', 'CSS0039256' => 'camsi', 'CSS0048392' => 'camsi', 'CSS0050458' => 'camsi', 'DCAR_004224' => 'dca', 'DCAR_006147' => 'dca', 'DCAR_006465' => 'dca', 'DCAR_008159' => 'dca', 'DCAR_012164' => 'dca', 'DCAR_019764' => 'dca', 'Dinv05418' => 'din', 'Dinv10839' => 'din', 'Dinv12521' => 'din', 'Dinv13900' => 'din', 'Dinv29426' => 'din', 'Duzib150G0263' => 'dzi', 'Duzib168G1178' => 'dzi', 'Duzib168G1924' => 'dzi', 'Duzib170G0299' => 'dzi', 'Duzib170G0813' => 'dzi', 'Duzib235G1128' => 'dzi', 'Duzib248G1060' => 'dzi', 'ECA232G1910' => 'eca', 'ECA233G4621' => 'eca', 'ECA238G1216' => 'eca', 'ECA238G1784' => 'eca', 'ECA248G1242' => 'eca', 'EL10Ac8g20071' => 'bvu', 'EL10Ac9g21086' => 'bvu', 'EL10Ac9g22407' => 'bvu', 'EL10Ac9g22412' => 'bvu', 'Eucgr.A01119' => 'egr', 'Eucgr.E04043' => 'egr', 'Eucgr.J00428' => 'egr', 'Eucgr.J00958' => 'egr', 'FAN11G3091' => 'fan', 'FAN11G3651' => 'fan', 'FAN16G2566' => 'fan', 'FAN21G3155' => 'fan', 'FAN21G3400' => 'fan', 'FAN21G3543' => 'fan', 'FAN25G0234' => 'fan', 'FAN25G1422' => 'fan', 'FAN25G3392' => 'fan', 'FvH4_3g01940' => 'fve', 'FvH4_3g29870' => 'fve', 'FvH4_3g33680' => 'fve', 'Glyma.09G004200' => 'gma', 'Glyma.11G151288' => 'gma', 'Glyma.11G189100' => 'gma', 'Glyma.12G072500' => 'gma', 'Glyma.12G085500' => 'gma', 'Glyma.12G181800' => 'gma', 'Glyma.12G193000' => 'gma', 'Glyma.13G309300' => 'gma', 'Glyma.13G319000' => 'gma', 'Glyma.17G012600' => 'gma', 'Gohir.A06G148600' => 'ghi', 'Gohir.A07G115800' => 'ghi', 'Gohir.A08G003600' => 'ghi', 'Gohir.A09G093300' => 'ghi', 'Gohir.A09G105400' => 'ghi', 'Gohir.A09G105500' => 'ghi', 'Gohir.D06G154600' => 'ghi', 'Gohir.D07G120200' => 'ghi', 'Gohir.D08G013900' => 'ghi', 'Gohir.D09G093100' => 'ghi', 'Gohir.D09G102200' => 'ghi', 'Gohir.D09G102300' => 'ghi', 'Gorai.001G129400' => 'gra', 'Gorai.004G008200' => 'gra', 'Gorai.006G109800' => 'gra', 'Gorai.006G119500' => 'gra', 'Gorai.006G121300' => 'gra', 'Gorai.010G180700' => 'gra', 'GSVIVG01012716001' => 'vvi', 'GSVIVG01025118001' => 'vvi', 'GSVIVG01030439001' => 'vvi', 'GSVIVG01031397001' => 'vvi', 'HanXRQChr01g0004201' => 'han', 'HanXRQChr02g0054941' => 'han', 'HanXRQChr05g0141811' => 'han', 'HanXRQChr07g0197751' => 'han', 'HanXRQChr11g0346691' => 'han', 'HanXRQChr13g0396971' => 'han', 'HanXRQChr14g0432951' => 'han', 'HanXRQChr14g0452001' => 'han', 'HanXRQChr15g0496681' => 'han', 'HanXRQChr17g0557491' => 'han', 'HanXRQChr17g0557501' => 'han', 'Haze_06809' => 'cav', 'Haze_12852' => 'cav', 'Haze_15850' => 'cav', 'Haze_23446' => 'cav', 'Haze_23942' => 'cav', 'Haze_23943' => 'cav', 'Hma1.2p1_0091F.1_g046450' => 'hma', 'Hma1.2p1_0128F.1_g059910' => 'hma', 'Hma1.2p1_0249F.1_g102260' => 'hma', 'Hma1.2p1_0453F.1_g156190' => 'hma', 'Hma1.2p1_0695F.1_g204380' => 'hma', 'Hma1.2p1_0749F.1_g212650' => 'hma', 'Hma1.2p1_2156F.1_g315420' => 'hma', 'Hma1.2p1_2686F.1_g326940' => 'hma', 'HPP92_006428' => 'vpl', 'HPP92_012069' => 'vpl', 'HPP92_014129' => 'vpl', 'HPP92_014133' => 'vpl', 'HPP92_017315' => 'vpl', 'HPP92_026445' => 'vpl', 'HPP92_026446' => 'vpl', 'Hund00774' => 'sun', 'Hund07682' => 'sun', 'Hund21413' => 'sun', 'Hund23462' => 'sun', 'Hund23463' => 'sun', 'Lalb_Chr03g0027911' => 'lal', 'Lalb_Chr13g0304271' => 'lal', 'Lalb_Chr19g0137471' => 'lal', 'Lalb_Chr22g0350651' => 'lal', 'Lalb_Chr24g0395151' => 'lal', 'Lj1A1231T40' => 'lonja', 'Lj1A221T48' => 'lonja', 'Lj1C924T12' => 'lonja', 'Lj2C993G6' => 'lonja', 'Lj3g0005790' => 'lja', 'Lj3g0015432' => 'lja', 'Lj3g0017722' => 'lja', 'Lj3g0018497' => 'lja', 'Lj4g0025071' => 'lja', 'Lsat_1_v5_gn_1_129680' => 'lsa', 'Lsat_1_v5_gn_2_25321' => 'lsa', 'Lsat_1_v5_gn_2_95461' => 'lsa', 'Lsat_1_v5_gn_4_159620' => 'lsa', 'Lsat_1_v5_gn_6_41301' => 'lsa', 'Lsat_1_v5_gn_6_74660' => 'lsa', 'Lsat_1_v5_gn_7_11520' => 'lsa', 'Lsat_1_v5_gn_9_67680' => 'lsa', 'Manes.04G008300' => 'mes', 'Manes.04G008400' => 'mes', 'Manes.04G026500' => 'mes', 'Manes.10G135300' => 'mes', 'Manes.11G157300' => 'mes', 'Manes.12G074000' => 'mes', 'Manes.16G006200' => 'mes', 'Manes.17G026400' => 'mes', 'Mapoly0024s0086' => 'mpo', 'Mapoly0024s0087' => 'mpo', 'Mapoly0071s0057' => 'mpo', 'Mapoly0204s0012' => 'mpo', 'MBI04_g37681_MAGBIO' => 'mbi', 'MBI05_g17779_MAGBIO' => 'mbi', 'MBI12_g31184_MAGBIO' => 'mbi', 'MBI17_g11083_MAGBIO' => 'mbi', 'MBI18_g03883_MAGBIO' => 'mbi', 'MBI18_g28940_MAGBIO' => 'mbi', 'MCO01G690' => 'mco', 'MD03G1109900' => 'mdo', 'MD03G1134800' => 'mdo', 'MD05G1348000' => 'mdo', 'MD10G1322400' => 'mdo', 'MD11G1123300' => 'mdo', 'MD11G1157600' => 'mdo', 'Medtr2g084875' => 'mtr', 'Medtr2g088130' => 'mtr', 'Medtr4g055310' => 'mtr', 'Medtr4g061070' => 'mtr', 'Medtr4g132250' => 'mtr', 'MELO3C004795.2' => 'cme', 'MELO3C004797.2' => 'cme', 'MELO3C007396.2' => 'cme', 'MELO3C019277.2' => 'cme', 'MELO3C021449.2' => 'cme', 'MELO3C025736.2' => 'cme', 'Migut.D02175' => 'egut', 'Migut.H01573' => 'egut', 'Migut.M01327' => 'egut', 'Migut.N02513' => 'egut', 'MSTRG.14638' => 'ama', 'MSTRG.18632' => 'ama', 'MSTRG.7203' => 'ama', 'Nitab4.5_0000533g0140' => 'nta', 'Nitab4.5_0000888g0150' => 'nta', 'Nitab4.5_0001453g0040' => 'nta', 'Nitab4.5_0002827g0090' => 'nta', 'Nitab4.5_0003082g0040' => 'nta', 'Nitab4.5_0007799g0040' => 'nta', 'Nitab4.5_0008983g0010' => 'nta', 'Nitab4.5_0009017g0020' => 'nta', 'Nn1g02132' => 'nnu', 'Nn1g03492' => 'nnu', 'Nn1g03493' => 'nnu', 'Nn1g03494' => 'nnu', 'Nn1g07164' => 'nnu', 'Nn1g07291' => 'nnu', 'Nn2g10655' => 'nnu', 'Nn2g11652' => 'nnu', 'Nn2g14008' => 'nnu', 'Nn3g17476' => 'nnu', 'Nn3g17477' => 'nnu', 'Nn4g22370' => 'nnu', 'Nn4g25255' => 'nnu', 'Nn5g27755' => 'nnu', 'Nn6g34260' => 'nnu', 'Nn6g35041' => 'nnu', 'Oeu005924.1' => 'oeu', 'Oeu008383.1' => 'oeu', 'Oeu014928.1' => 'oeu', 'Oeu019889.1' => 'oeu', 'Oeu022271.1' => 'oeu', 'Oeu025271.1' => 'oeu', 'Oeu036302.1' => 'oeu', 'Oeu044100.1' => 'oeu', 'Os01g0528300' => 'osa', 'Os03g0286200' => 'osa', 'Os04g0406600' => 'osa', 'Os07g0512000' => 'osa', 'Os07g0694600' => 'osa', 'Os08g0411000' => 'osa', 'Os09g0565700' => 'osa', 'Os09g0566050' => 'osa', 'Os10g0523700' => 'osa', 'Peaxi162Scf00002g00514' => 'pax', 'Peaxi162Scf00047g01817' => 'pax', 'Peaxi162Scf00114g00001' => 'pax', 'Peaxi162Scf00147g00613' => 'pax', 'Peaxi162Scf00389g00425' => 'pax', 'PGR042G1139' => 'pgr', 'PGR042G3273' => 'pgr', 'PGR102G2180' => 'pgr', 'PGR119G0234' => 'pgr', 'PGR119G0668' => 'pgr', 'PGSC0003DMG400007122' => 'stu', 'PGSC0003DMG400016478' => 'stu', 'PGSC0003DMG400025374' => 'stu', 'PGSC0003DMG400026536' => 'stu', 'Phvul.003G079600' => 'pvu', 'Phvul.005G115600' => 'pvu', 'Phvul.005G127100' => 'pvu', 'Phvul.006G149500' => 'pvu', 'Phvul.006G149600' => 'pvu', 'Phvul.011G071800' => 'pvu', 'Phvul.011G090400' => 'pvu', 'Potri.004G013400' => 'ptr', 'Potri.004G188100' => 'ptr', 'Potri.008G195500' => 'ptr', 'Potri.009G148800' => 'ptr', 'Potri.011G004700' => 'ptr', 'Pp3c17_22810' => 'ppa', 'Pp3c18_4480' => 'ppa', 'Pp3c19_13030' => 'ppa', 'Pp3c1_33620' => 'ppa', 'Pp3c2_9380' => 'ppa', 'PRCOL_00001023' => 'pco', 'Prupe.3G216300' => 'ppe', 'Prupe.4G019500' => 'ppe', 'Prupe.6G092500' => 'ppe', 'Prupe.6G119200' => 'ppe', 'Psat0s1945g0080' => 'psa', 'Psat0s4167g0040' => 'psa', 'Psat1g185800' => 'psa', 'Psat4g006440' => 'psa', 'Psat4g006480' => 'psa', 'Psat4g168120' => 'psa', 'Psat5g255680' => 'psa', 'Psat5g261760' => 'psa', 'Psat7g222120' => 'psa', 'PSO063G7252' => 'pso', 'PSO170G4778' => 'pso', 'PSO210G2249' => 'pso', 'PSO339G2411' => 'pso', 'PSO339G2457' => 'pso', 'PSO339G2854' => 'pso', 'PSO339G4288' => 'pso', 'PSO339G4615' => 'pso', 'PSO384G2796' => 'pso', 'PSO384G2940' => 'pso', 'PSO384G4227' => 'pso', 'PSO478G1425' => 'pso', 'PSO541G3863' => 'pso', 'PSO675G0507' => 'pso', 'PSO782G0338' => 'pso', 'PSO832G0644' => 'pso', 'QL01p013664' => 'qlo', 'QL01p036598' => 'qlo', 'QL05p072984' => 'qlo', 'QL08p005768' => 'qlo', 'QL08p032743' => 'qlo', 'QL93p0073_0439' => 'qlo', 'QL93p0073_0444' => 'qlo', 'RcHm_v2.0_Chr5g0002851' => 'rch', 'RcHm_v2.0_Chr5g0055201' => 'rch', 'RcHm_v2.0_Chr5g0061191' => 'rch', 'RcHm_v2.0_Chr7g0203231' => 'rch', 'Rhsim01G0208100' => 'rsi', 'Rhsim01G0208200' => 'rsi', 'Rhsim02G0106500' => 'rsi', 'Rhsim03G0107900' => 'rsi', 'Rhsim06G0163400' => 'rsi', 'Rhsim13G0105200' => 'rsi', 'Sabra04G0006300' => 'sbr', 'Sabra04G0127000' => 'sbr', 'Sabra08G0148700' => 'sbr', 'Sabra09G0117400' => 'sbr', 'SalBow1G3326' => 'sbo', 'SalBow3G3228' => 'sbo', 'SalBow6G1634' => 'sbo', 'SalBow6G3603' => 'sbo', 'SalBow6G5266' => 'sbo', 'SalBow7G2265' => 'sbo', 'SalBow8G0850' => 'sbo', 'SalBow8G2592' => 'sbo', 'Sc05g0009240' => 'sci', 'Sc12g0002300' => 'sci', 'Sc21g0000100' => 'sci', 'Sc21g0004720' => 'sci', 'Sed0002949' => 'sed', 'Sed0004114' => 'sed', 'Sed0004306' => 'sed', 'Sed0006172' => 'sed', 'Sed0008413' => 'sed', 'Sed0013809' => 'sed', 'Sed0019556' => 'sed', 'SEGI_03570' => 'sgi', 'SEGI_07859' => 'sgi', 'SEGI_15042' => 'sgi', 'SEGI_16263' => 'sgi', 'SEGI_16552' => 'sgi', 'SEGI_24331' => 'sgi', 'SEGI_27316' => 'sgi', 'SEGI_29521' => 'sgi', 'SEGI_41342' => 'sgi', 'SGA_v2.0_scaffold27G11617' => 'sas', 'SGA_v2.0_scaffold316G48428' => 'sas', 'SGA_v2.0_scaffold49G18261' => 'sas', 'SGA_v2.0_scaffold7G03831' => 'sas', 'SGA_v2.0_scaffold93G28359' => 'sas', 'SHI02210' => 'shi', 'SHI06028' => 'shi', 'SHI06321' => 'shi', 'SMO111G0012' => 'smo', 'SMO228G0080' => 'smo', 'SMO356G0756' => 'smo', 'Solyc02g080620.3' => 'sly', 'Solyc06g074530.1' => 'sly', 'Solyc11g066890.1' => 'sly', 'Solyc11g072520.3' => 'sly', 'Sopen02g025330' => 'spe', 'Sopen06g031000' => 'spe', 'Sopen09g008240' => 'spe', 'Sopen09g025210' => 'spe', 'Sopen11g026600' => 'spe', 'Sopen11g030170' => 'spe', 'Sp1g10420' => 'spa', 'Sp3g06570' => 'spa', 'Sp4g10660' => 'spa', 'Sp5g16460' => 'spa', 'Sp6g22710' => 'spa', 'TAR365G0112' => 'tar', 'TAR369G0717' => 'tar', 'TAR374G0976' => 'tar', 'TAR623G1128' => 'tar', 'TAR626G1937' => 'tar', 'TAR627G0123' => 'tar', 'TAR628G0305' => 'tar', 'TAR636G1176' => 'tar', 'TAR636G2442' => 'tar', 'THA.LOC104800556' => 'tha', 'THA.LOC104809501' => 'tha', 'THA.LOC104815126' => 'tha', 'THA.LOC104815732' => 'tha', 'THA.LOC104823528' => 'tha', 'Thecc.02G365600' => 'tca', 'Thecc.06G222300' => 'tca', 'Thecc.09G261800' => 'tca', 'Thecc.09G291400' => 'tca', 'Thhalv10003028m.g' => 'esa', 'Thhalv10007886m.g' => 'esa', 'Thhalv10016085m.g' => 'esa', 'Thhalv10016681m.g' => 'esa', 'Thhalv10020951m.g' => 'esa', 'TPR.G15598' => 'tpr', 'TPR.G29305' => 'tpr', 'TPR.G32395' => 'tpr', 'TPR.G36998' => 'tpr', 'TPR.G4227' => 'tpr', 'TWI18G1433' => 'twi', 'TWI31G0755' => 'twi', 'TWI38G0912' => 'twi', 'TWI75G1097' => 'twi', 'TWI75G1619' => 'twi', 'TWI79G1336' => 'twi', 'unitig_0.g943' => 'ugi', 'unitig_0.g944' => 'ugi', 'unitig_22.g6646' => 'ugi', 'unitig_37.g12681' => 'ugi', 'unitig_8.g3290' => 'ugi', 'vmacro03278' => 'vma', 'vmacro12197' => 'vma', 'vmacro14478' => 'vma', 'vmacro15787' => 'vma', 'vmacro15789' => 'vma', 'vmacro15790' => 'vma', 'vmacro15806' => 'vma', 'vmacro22907' => 'vma', 'vmacro22908' => 'vma', 'vmacro22909' => 'vma', 'vmacro23108' => 'vma', 'VMungo0540G0540' => 'vmu', 'VMungo0540G2468' => 'vmu', 'VMungo1080G0390' => 'vmu', 'VMungo1080G1165' => 'vmu', 'VMungo1127G0170' => 'vmu', 'VMungo1127G2099' => 'vmu', 'VMungo1215G3013' => 'vmu', 'Zm00001eb013110' => 'zma', 'Zm00001eb084260' => 'zma', 'Zm00001eb096110' => 'zma', 'Zm00001eb217510' => 'zma', 'Zm00001eb322550' => 'zma', 'Zm00001eb390770' => 'zma', 'Zm00001eb397170' => 'zma', 'Zm00001eb404610' => 'zma', 'Zm00001eb421790' => 'zma' ) $gf_id = 'HOM05D000911' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000911' ) $data_identifier = 'HOM05D000911' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 16, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 5, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 6, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 8, 'nnu' => (int) 16, 'oeu' => (int) 8, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 5, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 16, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421790' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000911', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27780' => 'bna', 'A03p35380' => 'bna', 'A04p21160' => 'bna', 'A05p40570' => 'bna', 'A06p26900' => 'bna', 'A08p33230' => 'bna', 'A09p65960' => 'bna', 'A10p18290' => 'bna', 'Aa31LG1G12990' => 'aar', 'Aa31LG1G2980' => 'aar', 'Aa31LG4G14320' => 'aar', 'Aa31LG7G11800' => 'aar', 'Aa31sc36G50' => 'aar', 'Aa31sc36G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3721' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5459' => 'aag', 'Actinidia03028' => 'ach', 'Actinidia03753' => 'ach', 'Actinidia04187' => 'ach', 'Actinidia05509' => 'ach', 'Actinidia24180' => 'ach', 'Actinidia26906' => 'ach', 'Actinidia37097' => 'ach', 'Actinidia38249' => 'ach', 'Ah.01g003470' => 'amhyb', 'Ah.01g004580' => 'amhyb', 'Ah.01g014850' => 'amhyb', 'Ah.01g016830' => 'amhyb', 'Ah.14g088000' => 'amhyb', 'AL1G22980' => 'aly', 'AL3G18990' => 'aly', 'AL4G22440' => 'aly', 'AL4G33180' => 'aly', 'AL5G22920' => 'aly', 'AL6G33660' => 'aly', 'AL8G20720' => 'aly', 'Aqoxy1G00935' => 'aox', 'Aqoxy1G02094' => 'aox', 'Aqoxy2G01239' => 'aox', 'Aqoxy4G01870' => 'aox', 'Aqoxy7G00450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.36ZVTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71EM27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5D6C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH3WRE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3NCM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RIM768' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YB5YRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z36GDV' => 'arhy', 'AT1G08250' => 'ath', 'AT1G11790' => 'ath', 'AT2G27820' => 'ath', 'AT3G07630' => 'ath', 'AT3G44720' => 'ath', 'AT5G22630' => 'ath', 'ATR0693G304' => 'atr', 'ATR0794G109' => 'atr', 'ATR0820G120' => 'atr', 'ATR1159G064' => 'atr', 'Atru.chr10.2239' => 'acertr', 'Atru.chr3.3371' => 'acertr', 'Atru.chr6.3202' => 'acertr', 'AUR62006499' => 'cqu', 'AUR62012718' => 'cqu', 'AUR62021938' => 'cqu', 'AUR62023932' => 'cqu', 'AUR62025034' => 'cqu', 'AUR62025035' => 'cqu', 'AUR62038307' => 'cqu', 'AUR62043466' => 'cqu', 'BcaB02g10748' => 'bca', 'BcaB03g13231' => 'bca', 'BcaB03g14689' => 'bca', 'BcaB05g22716' => 'bca', 'BcaB06g28172' => 'bca', 'BcaB08g36413' => 'bca', 'BcaC01g02186' => 'bca', 'BcaC01g04272' => 'bca', 'BcaC02g08080' => 'bca', 'BcaC02g08227' => 'bca', 'BcaC03g13901' => 'bca', 'BcaC04g19593' => 'bca', 'BcaC04g20874' => 'bca', 'BcaC05g29557' => 'bca', 'BcaC06g35505' => 'bca', 'BcaC07g41954' => 'bca', 'BcaC07g41955' => 'bca', 'BcaC07g41956' => 'bca', 'BcaC07g42519' => 'bca', 'BcaC07g42520' => 'bca', 'BcaC07g42523' => 'bca', 'BcaC07g42524' => 'bca', 'BcaC07g42525' => 'bca', 'BcaC08g47480' => 'bca', 'BcaC08g47481' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00530' => 'bna', 'BolC2t07178H' => 'bol', 'BolC3t16567H' => 'bol', 'BolC4t27234H' => 'bol', 'BolC5t29728H' => 'bol', 'BolC5t34622H' => 'bol', 'BolC6t40321H' => 'bol', 'BolC7t42028H' => 'bol', 'BolC8t49125H' => 'bol', 'BolC8t52538H' => 'bol', 'BolC8t52539H' => 'bol', 'BolC9t56681H' => 'bol', 'BolC9t58266H' => 'bol', 'BolSC21t60294H' => 'bol', 'BraA02t05670Z' => 'bra', 'BraA03t12716Z' => 'bra', 'BraA04t17685Z' => 'bra', 'BraA05t22788Z' => 'bra', 'BraA06t24032Z' => 'bra', 'BraA06t25625Z' => 'bra', 'BraA07t27930Z' => 'bra', 'BraA08t35242Z' => 'bra', 'BraA09t38609Z' => 'bra', 'BraA10t43905Z' => 'bra', 'C02p11060' => 'bna', 'C03p42990' => 'bna', 'C03p67310' => 'bna', 'C04p56990' => 'bna', 'C04p58660' => 'bna', 'C05p09890' => 'bna', 'C05p59680' => 'bna', 'C06p19830' => 'bna', 'C06p53040' => 'bna', 'C07p15230' => 'bna', 'C08p50070' => 'bna', 'C08p50090' => 'bna', 'C09p38330' => 'bna', 'C09p53940' => 'bna', 'CAN.G1014.1' => 'can', 'CAN.G644.30' => 'can', 'CAN.G84.47' => 'can', 'CAN.G919.8' => 'can', 'CANSAT54G0113' => 'cansat', 'CANSAT54G1286' => 'cansat', 'CANSAT64G1020' => 'cansat', 'CARHR008080' => 'chi', 'CARHR008090' => 'chi', 'CARHR012130' => 'chi', 'CARHR038390' => 'chi', 'CARHR082330' => 'chi', 'CARHR120520' => 'chi', 'CARHR151470' => 'chi', 'CARHR190950' => 'chi', 'Carub.0001s0760' => 'cru', 'Carub.0001s1146' => 'cru', 'Carub.0003s0721' => 'cru', 'Carub.0004s0858' => 'cru', 'Carub.0005s1040' => 'cru', 'Carub.0006s2035' => 'cru', 'Carub.0015s0005' => 'cru', 'Ca_01607_v3' => 'car', 'Ca_01677_v3' => 'car', 'Ca_06087_v3' => 'car', 'Ca_19238_v3' => 'car', 'Ca_19373_v3' => 'car', 'Ca_21079_v3' => 'car', 'CBR_g54016' => 'cbr', 'CBR_g54018' => 'cbr', 'CBR_g54020' => 'cbr', 'Cc01_g09780' => 'ccan', 'Cc01_g11680' => 'ccan', 'Cc02_g15610' => 'ccan', 'Cc05_g04350' => 'ccan', 'Cc09_g01580' => 'ccan', 'CDE01G0795' => 'cde', 'CDE02G2024' => 'cde', 'CDE02G2260' => 'cde', 'CDE02G4561' => 'cde', 'CDE05G2733' => 'cde', 'CDE05G3422' => 'cde', 'CDE06G2003' => 'cde', 'CDE08G0576' => 'cde', 'CDE09G0048' => 'cde', 'CDE11G0805' => 'cde', 'Cfa003644' => 'cfa', 'Cfa006290' => 'cfa', 'Cfa010080' => 'cfa', 'Cfa011376' => 'cfa', 'Cfa011576' => 'cfa', 'Cfa011577' => 'cfa', 'Cfa014389' => 'cfa', 'Ciclev10006044m.g' => 'ccl', 'Ciclev10006954m.g' => 'ccl', 'Ciclev10015131m.g' => 'ccl', 'Ciclev10015580m.g' => 'ccl', 'Ciclev10028359m.g' => 'ccl', 'Ciclev10028573m.g' => 'ccl', 'CiPaw.03G159300' => 'cil', 'CiPaw.04G115100' => 'cil', 'CiPaw.09G092800' => 'cil', 'CiPaw.10G071800' => 'cil', 'CiPaw.13G105800' => 'cil', 'CiPaw.13G141000' => 'cil', 'CiPaw.14G103400' => 'cil', 'ClCG01G012700' => 'cla', 'ClCG01G012720' => 'cla', 'ClCG01G021920' => 'cla', 'ClCG02G008870' => 'cla', 'ClCG02G020840' => 'cla', 'ClCG02G021930' => 'cla', 'COL.COLO4_19302' => 'col', 'COL.COLO4_25262' => 'col', 'COL.COLO4_31788' => 'col', 'Cpa.g.c34684' => 'cpa', 'Cpa.g.c36520.1' => 'cpa', 'Cpa.g.c45626' => 'cpa', 'Cpa.g.sc121.17' => 'cpa', 'Cpa.g.sc13.22' => 'cpa', 'Cpa.g.sc87.88' => 'cpa', 'Cre06.g261800' => 'cre', 'CsaV3_1G014500' => 'csa', 'CsaV3_1G014510' => 'csa', 'CsaV3_2G034880' => 'csa', 'CsaV3_6G014760' => 'csa', 'CsaV3_6G021500' => 'csa', 'CsaV3_6G048980' => 'csa', 'CSS0002511' => 'camsi', 'CSS0007556' => 'camsi', 'CSS0008532' => 'camsi', 'CSS0009709' => 'camsi', 'CSS0010486' => 'camsi', 'CSS0016768' => 'camsi', 'CSS0023512' => 'camsi', 'CSS0025341' => 'camsi', 'CSS0027999' => 'camsi', 'CSS0028944' => 'camsi', 'CSS0032292' => 'camsi', 'CSS0032464' => 'camsi', 'CSS0037153' => 'camsi', 'CSS0039256' => 'camsi', 'CSS0048392' => 'camsi', 'CSS0050458' => 'camsi', 'DCAR_004224' => 'dca', 'DCAR_006147' => 'dca', 'DCAR_006465' => 'dca', 'DCAR_008159' => 'dca', 'DCAR_012164' => 'dca', 'DCAR_019764' => 'dca', 'Dinv05418' => 'din', 'Dinv10839' => 'din', 'Dinv12521' => 'din', 'Dinv13900' => 'din', 'Dinv29426' => 'din', 'Duzib150G0263' => 'dzi', 'Duzib168G1178' => 'dzi', 'Duzib168G1924' => 'dzi', 'Duzib170G0299' => 'dzi', 'Duzib170G0813' => 'dzi', 'Duzib235G1128' => 'dzi', 'Duzib248G1060' => 'dzi', 'ECA232G1910' => 'eca', 'ECA233G4621' => 'eca', 'ECA238G1216' => 'eca', 'ECA238G1784' => 'eca', 'ECA248G1242' => 'eca', 'EL10Ac8g20071' => 'bvu', 'EL10Ac9g21086' => 'bvu', 'EL10Ac9g22407' => 'bvu', 'EL10Ac9g22412' => 'bvu', 'Eucgr.A01119' => 'egr', 'Eucgr.E04043' => 'egr', 'Eucgr.J00428' => 'egr', 'Eucgr.J00958' => 'egr', 'FAN11G3091' => 'fan', 'FAN11G3651' => 'fan', 'FAN16G2566' => 'fan', 'FAN21G3155' => 'fan', 'FAN21G3400' => 'fan', 'FAN21G3543' => 'fan', 'FAN25G0234' => 'fan', 'FAN25G1422' => 'fan', 'FAN25G3392' => 'fan', 'FvH4_3g01940' => 'fve', 'FvH4_3g29870' => 'fve', 'FvH4_3g33680' => 'fve', 'Glyma.09G004200' => 'gma', 'Glyma.11G151288' => 'gma', 'Glyma.11G189100' => 'gma', 'Glyma.12G072500' => 'gma', 'Glyma.12G085500' => 'gma', 'Glyma.12G181800' => 'gma', 'Glyma.12G193000' => 'gma', 'Glyma.13G309300' => 'gma', 'Glyma.13G319000' => 'gma', 'Glyma.17G012600' => 'gma', 'Gohir.A06G148600' => 'ghi', 'Gohir.A07G115800' => 'ghi', 'Gohir.A08G003600' => 'ghi', 'Gohir.A09G093300' => 'ghi', 'Gohir.A09G105400' => 'ghi', 'Gohir.A09G105500' => 'ghi', 'Gohir.D06G154600' => 'ghi', 'Gohir.D07G120200' => 'ghi', 'Gohir.D08G013900' => 'ghi', 'Gohir.D09G093100' => 'ghi', 'Gohir.D09G102200' => 'ghi', 'Gohir.D09G102300' => 'ghi', 'Gorai.001G129400' => 'gra', 'Gorai.004G008200' => 'gra', 'Gorai.006G109800' => 'gra', 'Gorai.006G119500' => 'gra', 'Gorai.006G121300' => 'gra', 'Gorai.010G180700' => 'gra', 'GSVIVG01012716001' => 'vvi', 'GSVIVG01025118001' => 'vvi', 'GSVIVG01030439001' => 'vvi', 'GSVIVG01031397001' => 'vvi', 'HanXRQChr01g0004201' => 'han', 'HanXRQChr02g0054941' => 'han', 'HanXRQChr05g0141811' => 'han', 'HanXRQChr07g0197751' => 'han', 'HanXRQChr11g0346691' => 'han', 'HanXRQChr13g0396971' => 'han', 'HanXRQChr14g0432951' => 'han', 'HanXRQChr14g0452001' => 'han', 'HanXRQChr15g0496681' => 'han', 'HanXRQChr17g0557491' => 'han', 'HanXRQChr17g0557501' => 'han', 'Haze_06809' => 'cav', 'Haze_12852' => 'cav', 'Haze_15850' => 'cav', 'Haze_23446' => 'cav', 'Haze_23942' => 'cav', 'Haze_23943' => 'cav', 'Hma1.2p1_0091F.1_g046450' => 'hma', 'Hma1.2p1_0128F.1_g059910' => 'hma', 'Hma1.2p1_0249F.1_g102260' => 'hma', 'Hma1.2p1_0453F.1_g156190' => 'hma', 'Hma1.2p1_0695F.1_g204380' => 'hma', 'Hma1.2p1_0749F.1_g212650' => 'hma', 'Hma1.2p1_2156F.1_g315420' => 'hma', 'Hma1.2p1_2686F.1_g326940' => 'hma', 'HPP92_006428' => 'vpl', 'HPP92_012069' => 'vpl', 'HPP92_014129' => 'vpl', 'HPP92_014133' => 'vpl', 'HPP92_017315' => 'vpl', 'HPP92_026445' => 'vpl', 'HPP92_026446' => 'vpl', 'Hund00774' => 'sun', 'Hund07682' => 'sun', 'Hund21413' => 'sun', 'Hund23462' => 'sun', 'Hund23463' => 'sun', 'Lalb_Chr03g0027911' => 'lal', 'Lalb_Chr13g0304271' => 'lal', 'Lalb_Chr19g0137471' => 'lal', 'Lalb_Chr22g0350651' => 'lal', 'Lalb_Chr24g0395151' => 'lal', 'Lj1A1231T40' => 'lonja', 'Lj1A221T48' => 'lonja', 'Lj1C924T12' => 'lonja', 'Lj2C993G6' => 'lonja', 'Lj3g0005790' => 'lja', 'Lj3g0015432' => 'lja', 'Lj3g0017722' => 'lja', 'Lj3g0018497' => 'lja', 'Lj4g0025071' => 'lja', 'Lsat_1_v5_gn_1_129680' => 'lsa', 'Lsat_1_v5_gn_2_25321' => 'lsa', 'Lsat_1_v5_gn_2_95461' => 'lsa', 'Lsat_1_v5_gn_4_159620' => 'lsa', 'Lsat_1_v5_gn_6_41301' => 'lsa', 'Lsat_1_v5_gn_6_74660' => 'lsa', 'Lsat_1_v5_gn_7_11520' => 'lsa', 'Lsat_1_v5_gn_9_67680' => 'lsa', 'Manes.04G008300' => 'mes', 'Manes.04G008400' => 'mes', 'Manes.04G026500' => 'mes', 'Manes.10G135300' => 'mes', 'Manes.11G157300' => 'mes', 'Manes.12G074000' => 'mes', 'Manes.16G006200' => 'mes', 'Manes.17G026400' => 'mes', 'Mapoly0024s0086' => 'mpo', 'Mapoly0024s0087' => 'mpo', 'Mapoly0071s0057' => 'mpo', 'Mapoly0204s0012' => 'mpo', 'MBI04_g37681_MAGBIO' => 'mbi', 'MBI05_g17779_MAGBIO' => 'mbi', 'MBI12_g31184_MAGBIO' => 'mbi', 'MBI17_g11083_MAGBIO' => 'mbi', 'MBI18_g03883_MAGBIO' => 'mbi', 'MBI18_g28940_MAGBIO' => 'mbi', 'MCO01G690' => 'mco', 'MD03G1109900' => 'mdo', 'MD03G1134800' => 'mdo', 'MD05G1348000' => 'mdo', 'MD10G1322400' => 'mdo', 'MD11G1123300' => 'mdo', 'MD11G1157600' => 'mdo', 'Medtr2g084875' => 'mtr', 'Medtr2g088130' => 'mtr', 'Medtr4g055310' => 'mtr', 'Medtr4g061070' => 'mtr', 'Medtr4g132250' => 'mtr', 'MELO3C004795.2' => 'cme', 'MELO3C004797.2' => 'cme', 'MELO3C007396.2' => 'cme', 'MELO3C019277.2' => 'cme', 'MELO3C021449.2' => 'cme', 'MELO3C025736.2' => 'cme', 'Migut.D02175' => 'egut', 'Migut.H01573' => 'egut', 'Migut.M01327' => 'egut', 'Migut.N02513' => 'egut', 'MSTRG.14638' => 'ama', 'MSTRG.18632' => 'ama', 'MSTRG.7203' => 'ama', 'Nitab4.5_0000533g0140' => 'nta', 'Nitab4.5_0000888g0150' => 'nta', 'Nitab4.5_0001453g0040' => 'nta', 'Nitab4.5_0002827g0090' => 'nta', 'Nitab4.5_0003082g0040' => 'nta', 'Nitab4.5_0007799g0040' => 'nta', 'Nitab4.5_0008983g0010' => 'nta', 'Nitab4.5_0009017g0020' => 'nta', 'Nn1g02132' => 'nnu', 'Nn1g03492' => 'nnu', 'Nn1g03493' => 'nnu', 'Nn1g03494' => 'nnu', 'Nn1g07164' => 'nnu', 'Nn1g07291' => 'nnu', 'Nn2g10655' => 'nnu', 'Nn2g11652' => 'nnu', 'Nn2g14008' => 'nnu', 'Nn3g17476' => 'nnu', 'Nn3g17477' => 'nnu', 'Nn4g22370' => 'nnu', 'Nn4g25255' => 'nnu', 'Nn5g27755' => 'nnu', 'Nn6g34260' => 'nnu', 'Nn6g35041' => 'nnu', 'Oeu005924.1' => 'oeu', 'Oeu008383.1' => 'oeu', 'Oeu014928.1' => 'oeu', 'Oeu019889.1' => 'oeu', 'Oeu022271.1' => 'oeu', 'Oeu025271.1' => 'oeu', 'Oeu036302.1' => 'oeu', 'Oeu044100.1' => 'oeu', 'Os01g0528300' => 'osa', 'Os03g0286200' => 'osa', 'Os04g0406600' => 'osa', 'Os07g0512000' => 'osa', 'Os07g0694600' => 'osa', 'Os08g0411000' => 'osa', 'Os09g0565700' => 'osa', 'Os09g0566050' => 'osa', 'Os10g0523700' => 'osa', 'Peaxi162Scf00002g00514' => 'pax', 'Peaxi162Scf00047g01817' => 'pax', 'Peaxi162Scf00114g00001' => 'pax', 'Peaxi162Scf00147g00613' => 'pax', 'Peaxi162Scf00389g00425' => 'pax', 'PGR042G1139' => 'pgr', 'PGR042G3273' => 'pgr', 'PGR102G2180' => 'pgr', 'PGR119G0234' => 'pgr', 'PGR119G0668' => 'pgr', 'PGSC0003DMG400007122' => 'stu', 'PGSC0003DMG400016478' => 'stu', 'PGSC0003DMG400025374' => 'stu', 'PGSC0003DMG400026536' => 'stu', 'Phvul.003G079600' => 'pvu', 'Phvul.005G115600' => 'pvu', 'Phvul.005G127100' => 'pvu', 'Phvul.006G149500' => 'pvu', 'Phvul.006G149600' => 'pvu', 'Phvul.011G071800' => 'pvu', 'Phvul.011G090400' => 'pvu', 'Potri.004G013400' => 'ptr', 'Potri.004G188100' => 'ptr', 'Potri.008G195500' => 'ptr', 'Potri.009G148800' => 'ptr', 'Potri.011G004700' => 'ptr', 'Pp3c17_22810' => 'ppa', 'Pp3c18_4480' => 'ppa', 'Pp3c19_13030' => 'ppa', 'Pp3c1_33620' => 'ppa', 'Pp3c2_9380' => 'ppa', 'PRCOL_00001023' => 'pco', 'Prupe.3G216300' => 'ppe', 'Prupe.4G019500' => 'ppe', 'Prupe.6G092500' => 'ppe', 'Prupe.6G119200' => 'ppe', 'Psat0s1945g0080' => 'psa', 'Psat0s4167g0040' => 'psa', 'Psat1g185800' => 'psa', 'Psat4g006440' => 'psa', 'Psat4g006480' => 'psa', 'Psat4g168120' => 'psa', 'Psat5g255680' => 'psa', 'Psat5g261760' => 'psa', 'Psat7g222120' => 'psa', 'PSO063G7252' => 'pso', 'PSO170G4778' => 'pso', 'PSO210G2249' => 'pso', 'PSO339G2411' => 'pso', 'PSO339G2457' => 'pso', 'PSO339G2854' => 'pso', 'PSO339G4288' => 'pso', 'PSO339G4615' => 'pso', 'PSO384G2796' => 'pso', 'PSO384G2940' => 'pso', 'PSO384G4227' => 'pso', 'PSO478G1425' => 'pso', 'PSO541G3863' => 'pso', 'PSO675G0507' => 'pso', 'PSO782G0338' => 'pso', 'PSO832G0644' => 'pso', 'QL01p013664' => 'qlo', 'QL01p036598' => 'qlo', 'QL05p072984' => 'qlo', 'QL08p005768' => 'qlo', 'QL08p032743' => 'qlo', 'QL93p0073_0439' => 'qlo', 'QL93p0073_0444' => 'qlo', 'RcHm_v2.0_Chr5g0002851' => 'rch', 'RcHm_v2.0_Chr5g0055201' => 'rch', 'RcHm_v2.0_Chr5g0061191' => 'rch', 'RcHm_v2.0_Chr7g0203231' => 'rch', 'Rhsim01G0208100' => 'rsi', 'Rhsim01G0208200' => 'rsi', 'Rhsim02G0106500' => 'rsi', 'Rhsim03G0107900' => 'rsi', 'Rhsim06G0163400' => 'rsi', 'Rhsim13G0105200' => 'rsi', 'Sabra04G0006300' => 'sbr', 'Sabra04G0127000' => 'sbr', 'Sabra08G0148700' => 'sbr', 'Sabra09G0117400' => 'sbr', 'SalBow1G3326' => 'sbo', 'SalBow3G3228' => 'sbo', 'SalBow6G1634' => 'sbo', 'SalBow6G3603' => 'sbo', 'SalBow6G5266' => 'sbo', 'SalBow7G2265' => 'sbo', 'SalBow8G0850' => 'sbo', 'SalBow8G2592' => 'sbo', 'Sc05g0009240' => 'sci', 'Sc12g0002300' => 'sci', 'Sc21g0000100' => 'sci', 'Sc21g0004720' => 'sci', 'Sed0002949' => 'sed', 'Sed0004114' => 'sed', 'Sed0004306' => 'sed', 'Sed0006172' => 'sed', 'Sed0008413' => 'sed', 'Sed0013809' => 'sed', 'Sed0019556' => 'sed', 'SEGI_03570' => 'sgi', 'SEGI_07859' => 'sgi', 'SEGI_15042' => 'sgi', 'SEGI_16263' => 'sgi', 'SEGI_16552' => 'sgi', 'SEGI_24331' => 'sgi', 'SEGI_27316' => 'sgi', 'SEGI_29521' => 'sgi', 'SEGI_41342' => 'sgi', 'SGA_v2.0_scaffold27G11617' => 'sas', 'SGA_v2.0_scaffold316G48428' => 'sas', 'SGA_v2.0_scaffold49G18261' => 'sas', 'SGA_v2.0_scaffold7G03831' => 'sas', 'SGA_v2.0_scaffold93G28359' => 'sas', 'SHI02210' => 'shi', 'SHI06028' => 'shi', 'SHI06321' => 'shi', 'SMO111G0012' => 'smo', 'SMO228G0080' => 'smo', 'SMO356G0756' => 'smo', 'Solyc02g080620.3' => 'sly', 'Solyc06g074530.1' => 'sly', 'Solyc11g066890.1' => 'sly', 'Solyc11g072520.3' => 'sly', 'Sopen02g025330' => 'spe', 'Sopen06g031000' => 'spe', 'Sopen09g008240' => 'spe', 'Sopen09g025210' => 'spe', 'Sopen11g026600' => 'spe', 'Sopen11g030170' => 'spe', 'Sp1g10420' => 'spa', 'Sp3g06570' => 'spa', 'Sp4g10660' => 'spa', 'Sp5g16460' => 'spa', 'Sp6g22710' => 'spa', 'TAR365G0112' => 'tar', 'TAR369G0717' => 'tar', 'TAR374G0976' => 'tar', 'TAR623G1128' => 'tar', 'TAR626G1937' => 'tar', 'TAR627G0123' => 'tar', 'TAR628G0305' => 'tar', 'TAR636G1176' => 'tar', 'TAR636G2442' => 'tar', 'THA.LOC104800556' => 'tha', 'THA.LOC104809501' => 'tha', 'THA.LOC104815126' => 'tha', 'THA.LOC104815732' => 'tha', 'THA.LOC104823528' => 'tha', 'Thecc.02G365600' => 'tca', 'Thecc.06G222300' => 'tca', 'Thecc.09G261800' => 'tca', 'Thecc.09G291400' => 'tca', 'Thhalv10003028m.g' => 'esa', 'Thhalv10007886m.g' => 'esa', 'Thhalv10016085m.g' => 'esa', 'Thhalv10016681m.g' => 'esa', 'Thhalv10020951m.g' => 'esa', 'TPR.G15598' => 'tpr', 'TPR.G29305' => 'tpr', 'TPR.G32395' => 'tpr', 'TPR.G36998' => 'tpr', 'TPR.G4227' => 'tpr', 'TWI18G1433' => 'twi', 'TWI31G0755' => 'twi', 'TWI38G0912' => 'twi', 'TWI75G1097' => 'twi', 'TWI75G1619' => 'twi', 'TWI79G1336' => 'twi', 'unitig_0.g943' => 'ugi', 'unitig_0.g944' => 'ugi', 'unitig_22.g6646' => 'ugi', 'unitig_37.g12681' => 'ugi', 'unitig_8.g3290' => 'ugi', 'vmacro03278' => 'vma', 'vmacro12197' => 'vma', 'vmacro14478' => 'vma', 'vmacro15787' => 'vma', 'vmacro15789' => 'vma', 'vmacro15790' => 'vma', 'vmacro15806' => 'vma', 'vmacro22907' => 'vma', 'vmacro22908' => 'vma', 'vmacro22909' => 'vma', 'vmacro23108' => 'vma', 'VMungo0540G0540' => 'vmu', 'VMungo0540G2468' => 'vmu', 'VMungo1080G0390' => 'vmu', 'VMungo1080G1165' => 'vmu', 'VMungo1127G0170' => 'vmu', 'VMungo1127G2099' => 'vmu', 'VMungo1215G3013' => 'vmu', 'Zm00001eb013110' => 'zma', 'Zm00001eb084260' => 'zma', 'Zm00001eb096110' => 'zma', 'Zm00001eb217510' => 'zma', 'Zm00001eb322550' => 'zma', 'Zm00001eb390770' => 'zma', 'Zm00001eb397170' => 'zma', 'Zm00001eb404610' => 'zma', 'Zm00001eb421790' => 'zma' ), 'gf_id' => 'HOM05D000911', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000911' ), 'data_identifier' => 'HOM05D000911', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000911', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27780' => 'bna', 'A03p35380' => 'bna', 'A04p21160' => 'bna', 'A05p40570' => 'bna', 'A06p26900' => 'bna', 'A08p33230' => 'bna', 'A09p65960' => 'bna', 'A10p18290' => 'bna', 'Aa31LG1G12990' => 'aar', 'Aa31LG1G2980' => 'aar', 'Aa31LG4G14320' => 'aar', 'Aa31LG7G11800' => 'aar', 'Aa31sc36G50' => 'aar', 'Aa31sc36G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3721' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5459' => 'aag', 'Actinidia03028' => 'ach', 'Actinidia03753' => 'ach', 'Actinidia04187' => 'ach', 'Actinidia05509' => 'ach', 'Actinidia24180' => 'ach', 'Actinidia26906' => 'ach', 'Actinidia37097' => 'ach', 'Actinidia38249' => 'ach', 'Ah.01g003470' => 'amhyb', 'Ah.01g004580' => 'amhyb', 'Ah.01g014850' => 'amhyb', 'Ah.01g016830' => 'amhyb', 'Ah.14g088000' => 'amhyb', 'AL1G22980' => 'aly', 'AL3G18990' => 'aly', 'AL4G22440' => 'aly', 'AL4G33180' => 'aly', 'AL5G22920' => 'aly', 'AL6G33660' => 'aly', 'AL8G20720' => 'aly', 'Aqoxy1G00935' => 'aox', 'Aqoxy1G02094' => 'aox', 'Aqoxy2G01239' => 'aox', 'Aqoxy4G01870' => 'aox', 'Aqoxy7G00450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.36ZVTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71EM27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5D6C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH3WRE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3NCM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RIM768' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YB5YRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z36GDV' => 'arhy', 'AT1G08250' => 'ath', 'AT1G11790' => 'ath', 'AT2G27820' => 'ath', 'AT3G07630' => 'ath', 'AT3G44720' => 'ath', 'AT5G22630' => 'ath', 'ATR0693G304' => 'atr', 'ATR0794G109' => 'atr', 'ATR0820G120' => 'atr', 'ATR1159G064' => 'atr', 'Atru.chr10.2239' => 'acertr', 'Atru.chr3.3371' => 'acertr', 'Atru.chr6.3202' => 'acertr', 'AUR62006499' => 'cqu', 'AUR62012718' => 'cqu', 'AUR62021938' => 'cqu', 'AUR62023932' => 'cqu', 'AUR62025034' => 'cqu', 'AUR62025035' => 'cqu', 'AUR62038307' => 'cqu', 'AUR62043466' => 'cqu', 'BcaB02g10748' => 'bca', 'BcaB03g13231' => 'bca', 'BcaB03g14689' => 'bca', 'BcaB05g22716' => 'bca', 'BcaB06g28172' => 'bca', 'BcaB08g36413' => 'bca', 'BcaC01g02186' => 'bca', 'BcaC01g04272' => 'bca', 'BcaC02g08080' => 'bca', 'BcaC02g08227' => 'bca', 'BcaC03g13901' => 'bca', 'BcaC04g19593' => 'bca', 'BcaC04g20874' => 'bca', 'BcaC05g29557' => 'bca', 'BcaC06g35505' => 'bca', 'BcaC07g41954' => 'bca', 'BcaC07g41955' => 'bca', 'BcaC07g41956' => 'bca', 'BcaC07g42519' => 'bca', 'BcaC07g42520' => 'bca', 'BcaC07g42523' => 'bca', 'BcaC07g42524' => 'bca', 'BcaC07g42525' => 'bca', 'BcaC08g47480' => 'bca', 'BcaC08g47481' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00530' => 'bna', 'BolC2t07178H' => 'bol', 'BolC3t16567H' => 'bol', 'BolC4t27234H' => 'bol', 'BolC5t29728H' => 'bol', 'BolC5t34622H' => 'bol', 'BolC6t40321H' => 'bol', 'BolC7t42028H' => 'bol', 'BolC8t49125H' => 'bol', 'BolC8t52538H' => 'bol', 'BolC8t52539H' => 'bol', 'BolC9t56681H' => 'bol', 'BolC9t58266H' => 'bol', 'BolSC21t60294H' => 'bol', 'BraA02t05670Z' => 'bra', 'BraA03t12716Z' => 'bra', 'BraA04t17685Z' => 'bra', 'BraA05t22788Z' => 'bra', 'BraA06t24032Z' => 'bra', 'BraA06t25625Z' => 'bra', 'BraA07t27930Z' => 'bra', 'BraA08t35242Z' => 'bra', 'BraA09t38609Z' => 'bra', 'BraA10t43905Z' => 'bra', 'C02p11060' => 'bna', 'C03p42990' => 'bna', 'C03p67310' => 'bna', 'C04p56990' => 'bna', 'C04p58660' => 'bna', 'C05p09890' => 'bna', 'C05p59680' => 'bna', 'C06p19830' => 'bna', 'C06p53040' => 'bna', 'C07p15230' => 'bna', 'C08p50070' => 'bna', 'C08p50090' => 'bna', 'C09p38330' => 'bna', 'C09p53940' => 'bna', 'CAN.G1014.1' => 'can', 'CAN.G644.30' => 'can', 'CAN.G84.47' => 'can', 'CAN.G919.8' => 'can', 'CANSAT54G0113' => 'cansat', 'CANSAT54G1286' => 'cansat', 'CANSAT64G1020' => 'cansat', 'CARHR008080' => 'chi', 'CARHR008090' => 'chi', 'CARHR012130' => 'chi', 'CARHR038390' => 'chi', 'CARHR082330' => 'chi', 'CARHR120520' => 'chi', 'CARHR151470' => 'chi', 'CARHR190950' => 'chi', 'Carub.0001s0760' => 'cru', 'Carub.0001s1146' => 'cru', 'Carub.0003s0721' => 'cru', 'Carub.0004s0858' => 'cru', 'Carub.0005s1040' => 'cru', 'Carub.0006s2035' => 'cru', 'Carub.0015s0005' => 'cru', 'Ca_01607_v3' => 'car', 'Ca_01677_v3' => 'car', 'Ca_06087_v3' => 'car', 'Ca_19238_v3' => 'car', 'Ca_19373_v3' => 'car', 'Ca_21079_v3' => 'car', 'CBR_g54016' => 'cbr', 'CBR_g54018' => 'cbr', 'CBR_g54020' => 'cbr', 'Cc01_g09780' => 'ccan', 'Cc01_g11680' => 'ccan', 'Cc02_g15610' => 'ccan', 'Cc05_g04350' => 'ccan', 'Cc09_g01580' => 'ccan', 'CDE01G0795' => 'cde', 'CDE02G2024' => 'cde', 'CDE02G2260' => 'cde', 'CDE02G4561' => 'cde', 'CDE05G2733' => 'cde', 'CDE05G3422' => 'cde', 'CDE06G2003' => 'cde', 'CDE08G0576' => 'cde', 'CDE09G0048' => 'cde', 'CDE11G0805' => 'cde', 'Cfa003644' => 'cfa', 'Cfa006290' => 'cfa', 'Cfa010080' => 'cfa', 'Cfa011376' => 'cfa', 'Cfa011576' => 'cfa', 'Cfa011577' => 'cfa', 'Cfa014389' => 'cfa', 'Ciclev10006044m.g' => 'ccl', 'Ciclev10006954m.g' => 'ccl', 'Ciclev10015131m.g' => 'ccl', 'Ciclev10015580m.g' => 'ccl', 'Ciclev10028359m.g' => 'ccl', 'Ciclev10028573m.g' => 'ccl', 'CiPaw.03G159300' => 'cil', 'CiPaw.04G115100' => 'cil', 'CiPaw.09G092800' => 'cil', 'CiPaw.10G071800' => 'cil', 'CiPaw.13G105800' => 'cil', 'CiPaw.13G141000' => 'cil', 'CiPaw.14G103400' => 'cil', 'ClCG01G012700' => 'cla', 'ClCG01G012720' => 'cla', 'ClCG01G021920' => 'cla', 'ClCG02G008870' => 'cla', 'ClCG02G020840' => 'cla', 'ClCG02G021930' => 'cla', 'COL.COLO4_19302' => 'col', 'COL.COLO4_25262' => 'col', 'COL.COLO4_31788' => 'col', 'Cpa.g.c34684' => 'cpa', 'Cpa.g.c36520.1' => 'cpa', 'Cpa.g.c45626' => 'cpa', 'Cpa.g.sc121.17' => 'cpa', 'Cpa.g.sc13.22' => 'cpa', 'Cpa.g.sc87.88' => 'cpa', 'Cre06.g261800' => 'cre', 'CsaV3_1G014500' => 'csa', 'CsaV3_1G014510' => 'csa', 'CsaV3_2G034880' => 'csa', 'CsaV3_6G014760' => 'csa', 'CsaV3_6G021500' => 'csa', 'CsaV3_6G048980' => 'csa', 'CSS0002511' => 'camsi', 'CSS0007556' => 'camsi', 'CSS0008532' => 'camsi', 'CSS0009709' => 'camsi', 'CSS0010486' => 'camsi', 'CSS0016768' => 'camsi', 'CSS0023512' => 'camsi', 'CSS0025341' => 'camsi', 'CSS0027999' => 'camsi', 'CSS0028944' => 'camsi', 'CSS0032292' => 'camsi', 'CSS0032464' => 'camsi', 'CSS0037153' => 'camsi', 'CSS0039256' => 'camsi', 'CSS0048392' => 'camsi', 'CSS0050458' => 'camsi', 'DCAR_004224' => 'dca', 'DCAR_006147' => 'dca', 'DCAR_006465' => 'dca', 'DCAR_008159' => 'dca', 'DCAR_012164' => 'dca', 'DCAR_019764' => 'dca', 'Dinv05418' => 'din', 'Dinv10839' => 'din', 'Dinv12521' => 'din', 'Dinv13900' => 'din', 'Dinv29426' => 'din', 'Duzib150G0263' => 'dzi', 'Duzib168G1178' => 'dzi', 'Duzib168G1924' => 'dzi', 'Duzib170G0299' => 'dzi', 'Duzib170G0813' => 'dzi', 'Duzib235G1128' => 'dzi', 'Duzib248G1060' => 'dzi', 'ECA232G1910' => 'eca', 'ECA233G4621' => 'eca', 'ECA238G1216' => 'eca', 'ECA238G1784' => 'eca', 'ECA248G1242' => 'eca', 'EL10Ac8g20071' => 'bvu', 'EL10Ac9g21086' => 'bvu', 'EL10Ac9g22407' => 'bvu', 'EL10Ac9g22412' => 'bvu', 'Eucgr.A01119' => 'egr', 'Eucgr.E04043' => 'egr', 'Eucgr.J00428' => 'egr', 'Eucgr.J00958' => 'egr', 'FAN11G3091' => 'fan', 'FAN11G3651' => 'fan', 'FAN16G2566' => 'fan', 'FAN21G3155' => 'fan', 'FAN21G3400' => 'fan', 'FAN21G3543' => 'fan', 'FAN25G0234' => 'fan', 'FAN25G1422' => 'fan', 'FAN25G3392' => 'fan', 'FvH4_3g01940' => 'fve', 'FvH4_3g29870' => 'fve', 'FvH4_3g33680' => 'fve', 'Glyma.09G004200' => 'gma', 'Glyma.11G151288' => 'gma', 'Glyma.11G189100' => 'gma', 'Glyma.12G072500' => 'gma', 'Glyma.12G085500' => 'gma', 'Glyma.12G181800' => 'gma', 'Glyma.12G193000' => 'gma', 'Glyma.13G309300' => 'gma', 'Glyma.13G319000' => 'gma', 'Glyma.17G012600' => 'gma', 'Gohir.A06G148600' => 'ghi', 'Gohir.A07G115800' => 'ghi', 'Gohir.A08G003600' => 'ghi', 'Gohir.A09G093300' => 'ghi', 'Gohir.A09G105400' => 'ghi', 'Gohir.A09G105500' => 'ghi', 'Gohir.D06G154600' => 'ghi', 'Gohir.D07G120200' => 'ghi', 'Gohir.D08G013900' => 'ghi', 'Gohir.D09G093100' => 'ghi', 'Gohir.D09G102200' => 'ghi', 'Gohir.D09G102300' => 'ghi', 'Gorai.001G129400' => 'gra', 'Gorai.004G008200' => 'gra', 'Gorai.006G109800' => 'gra', 'Gorai.006G119500' => 'gra', 'Gorai.006G121300' => 'gra', 'Gorai.010G180700' => 'gra', 'GSVIVG01012716001' => 'vvi', 'GSVIVG01025118001' => 'vvi', 'GSVIVG01030439001' => 'vvi', 'GSVIVG01031397001' => 'vvi', 'HanXRQChr01g0004201' => 'han', 'HanXRQChr02g0054941' => 'han', 'HanXRQChr05g0141811' => 'han', 'HanXRQChr07g0197751' => 'han', 'HanXRQChr11g0346691' => 'han', 'HanXRQChr13g0396971' => 'han', 'HanXRQChr14g0432951' => 'han', 'HanXRQChr14g0452001' => 'han', 'HanXRQChr15g0496681' => 'han', 'HanXRQChr17g0557491' => 'han', 'HanXRQChr17g0557501' => 'han', 'Haze_06809' => 'cav', 'Haze_12852' => 'cav', 'Haze_15850' => 'cav', 'Haze_23446' => 'cav', 'Haze_23942' => 'cav', 'Haze_23943' => 'cav', 'Hma1.2p1_0091F.1_g046450' => 'hma', 'Hma1.2p1_0128F.1_g059910' => 'hma', 'Hma1.2p1_0249F.1_g102260' => 'hma', 'Hma1.2p1_0453F.1_g156190' => 'hma', 'Hma1.2p1_0695F.1_g204380' => 'hma', 'Hma1.2p1_0749F.1_g212650' => 'hma', 'Hma1.2p1_2156F.1_g315420' => 'hma', 'Hma1.2p1_2686F.1_g326940' => 'hma', 'HPP92_006428' => 'vpl', 'HPP92_012069' => 'vpl', 'HPP92_014129' => 'vpl', 'HPP92_014133' => 'vpl', 'HPP92_017315' => 'vpl', 'HPP92_026445' => 'vpl', 'HPP92_026446' => 'vpl', 'Hund00774' => 'sun', 'Hund07682' => 'sun', 'Hund21413' => 'sun', 'Hund23462' => 'sun', 'Hund23463' => 'sun', 'Lalb_Chr03g0027911' => 'lal', 'Lalb_Chr13g0304271' => 'lal', 'Lalb_Chr19g0137471' => 'lal', 'Lalb_Chr22g0350651' => 'lal', 'Lalb_Chr24g0395151' => 'lal', 'Lj1A1231T40' => 'lonja', 'Lj1A221T48' => 'lonja', 'Lj1C924T12' => 'lonja', 'Lj2C993G6' => 'lonja', 'Lj3g0005790' => 'lja', 'Lj3g0015432' => 'lja', 'Lj3g0017722' => 'lja', 'Lj3g0018497' => 'lja', 'Lj4g0025071' => 'lja', 'Lsat_1_v5_gn_1_129680' => 'lsa', 'Lsat_1_v5_gn_2_25321' => 'lsa', 'Lsat_1_v5_gn_2_95461' => 'lsa', 'Lsat_1_v5_gn_4_159620' => 'lsa', 'Lsat_1_v5_gn_6_41301' => 'lsa', 'Lsat_1_v5_gn_6_74660' => 'lsa', 'Lsat_1_v5_gn_7_11520' => 'lsa', 'Lsat_1_v5_gn_9_67680' => 'lsa', 'Manes.04G008300' => 'mes', 'Manes.04G008400' => 'mes', 'Manes.04G026500' => 'mes', 'Manes.10G135300' => 'mes', 'Manes.11G157300' => 'mes', 'Manes.12G074000' => 'mes', 'Manes.16G006200' => 'mes', 'Manes.17G026400' => 'mes', 'Mapoly0024s0086' => 'mpo', 'Mapoly0024s0087' => 'mpo', 'Mapoly0071s0057' => 'mpo', 'Mapoly0204s0012' => 'mpo', 'MBI04_g37681_MAGBIO' => 'mbi', 'MBI05_g17779_MAGBIO' => 'mbi', 'MBI12_g31184_MAGBIO' => 'mbi', 'MBI17_g11083_MAGBIO' => 'mbi', 'MBI18_g03883_MAGBIO' => 'mbi', 'MBI18_g28940_MAGBIO' => 'mbi', 'MCO01G690' => 'mco', 'MD03G1109900' => 'mdo', 'MD03G1134800' => 'mdo', 'MD05G1348000' => 'mdo', 'MD10G1322400' => 'mdo', 'MD11G1123300' => 'mdo', 'MD11G1157600' => 'mdo', 'Medtr2g084875' => 'mtr', 'Medtr2g088130' => 'mtr', 'Medtr4g055310' => 'mtr', 'Medtr4g061070' => 'mtr', 'Medtr4g132250' => 'mtr', 'MELO3C004795.2' => 'cme', 'MELO3C004797.2' => 'cme', 'MELO3C007396.2' => 'cme', 'MELO3C019277.2' => 'cme', 'MELO3C021449.2' => 'cme', 'MELO3C025736.2' => 'cme', 'Migut.D02175' => 'egut', 'Migut.H01573' => 'egut', 'Migut.M01327' => 'egut', 'Migut.N02513' => 'egut', 'MSTRG.14638' => 'ama', 'MSTRG.18632' => 'ama', 'MSTRG.7203' => 'ama', 'Nitab4.5_0000533g0140' => 'nta', 'Nitab4.5_0000888g0150' => 'nta', 'Nitab4.5_0001453g0040' => 'nta', 'Nitab4.5_0002827g0090' => 'nta', 'Nitab4.5_0003082g0040' => 'nta', 'Nitab4.5_0007799g0040' => 'nta', 'Nitab4.5_0008983g0010' => 'nta', 'Nitab4.5_0009017g0020' => 'nta', 'Nn1g02132' => 'nnu', 'Nn1g03492' => 'nnu', 'Nn1g03493' => 'nnu', 'Nn1g03494' => 'nnu', 'Nn1g07164' => 'nnu', 'Nn1g07291' => 'nnu', 'Nn2g10655' => 'nnu', 'Nn2g11652' => 'nnu', 'Nn2g14008' => 'nnu', 'Nn3g17476' => 'nnu', 'Nn3g17477' => 'nnu', 'Nn4g22370' => 'nnu', 'Nn4g25255' => 'nnu', 'Nn5g27755' => 'nnu', 'Nn6g34260' => 'nnu', 'Nn6g35041' => 'nnu', 'Oeu005924.1' => 'oeu', 'Oeu008383.1' => 'oeu', 'Oeu014928.1' => 'oeu', 'Oeu019889.1' => 'oeu', 'Oeu022271.1' => 'oeu', 'Oeu025271.1' => 'oeu', 'Oeu036302.1' => 'oeu', 'Oeu044100.1' => 'oeu', 'Os01g0528300' => 'osa', 'Os03g0286200' => 'osa', 'Os04g0406600' => 'osa', 'Os07g0512000' => 'osa', 'Os07g0694600' => 'osa', 'Os08g0411000' => 'osa', 'Os09g0565700' => 'osa', 'Os09g0566050' => 'osa', 'Os10g0523700' => 'osa', 'Peaxi162Scf00002g00514' => 'pax', 'Peaxi162Scf00047g01817' => 'pax', 'Peaxi162Scf00114g00001' => 'pax', 'Peaxi162Scf00147g00613' => 'pax', 'Peaxi162Scf00389g00425' => 'pax', 'PGR042G1139' => 'pgr', 'PGR042G3273' => 'pgr', 'PGR102G2180' => 'pgr', 'PGR119G0234' => 'pgr', 'PGR119G0668' => 'pgr', 'PGSC0003DMG400007122' => 'stu', 'PGSC0003DMG400016478' => 'stu', 'PGSC0003DMG400025374' => 'stu', 'PGSC0003DMG400026536' => 'stu', 'Phvul.003G079600' => 'pvu', 'Phvul.005G115600' => 'pvu', 'Phvul.005G127100' => 'pvu', 'Phvul.006G149500' => 'pvu', 'Phvul.006G149600' => 'pvu', 'Phvul.011G071800' => 'pvu', 'Phvul.011G090400' => 'pvu', 'Potri.004G013400' => 'ptr', 'Potri.004G188100' => 'ptr', 'Potri.008G195500' => 'ptr', 'Potri.009G148800' => 'ptr', 'Potri.011G004700' => 'ptr', 'Pp3c17_22810' => 'ppa', 'Pp3c18_4480' => 'ppa', 'Pp3c19_13030' => 'ppa', 'Pp3c1_33620' => 'ppa', 'Pp3c2_9380' => 'ppa', 'PRCOL_00001023' => 'pco', 'Prupe.3G216300' => 'ppe', 'Prupe.4G019500' => 'ppe', 'Prupe.6G092500' => 'ppe', 'Prupe.6G119200' => 'ppe', 'Psat0s1945g0080' => 'psa', 'Psat0s4167g0040' => 'psa', 'Psat1g185800' => 'psa', 'Psat4g006440' => 'psa', 'Psat4g006480' => 'psa', 'Psat4g168120' => 'psa', 'Psat5g255680' => 'psa', 'Psat5g261760' => 'psa', 'Psat7g222120' => 'psa', 'PSO063G7252' => 'pso', 'PSO170G4778' => 'pso', 'PSO210G2249' => 'pso', 'PSO339G2411' => 'pso', 'PSO339G2457' => 'pso', 'PSO339G2854' => 'pso', 'PSO339G4288' => 'pso', 'PSO339G4615' => 'pso', 'PSO384G2796' => 'pso', 'PSO384G2940' => 'pso', 'PSO384G4227' => 'pso', 'PSO478G1425' => 'pso', 'PSO541G3863' => 'pso', 'PSO675G0507' => 'pso', 'PSO782G0338' => 'pso', 'PSO832G0644' => 'pso', 'QL01p013664' => 'qlo', 'QL01p036598' => 'qlo', 'QL05p072984' => 'qlo', 'QL08p005768' => 'qlo', 'QL08p032743' => 'qlo', 'QL93p0073_0439' => 'qlo', 'QL93p0073_0444' => 'qlo', 'RcHm_v2.0_Chr5g0002851' => 'rch', 'RcHm_v2.0_Chr5g0055201' => 'rch', 'RcHm_v2.0_Chr5g0061191' => 'rch', 'RcHm_v2.0_Chr7g0203231' => 'rch', 'Rhsim01G0208100' => 'rsi', 'Rhsim01G0208200' => 'rsi', 'Rhsim02G0106500' => 'rsi', 'Rhsim03G0107900' => 'rsi', 'Rhsim06G0163400' => 'rsi', 'Rhsim13G0105200' => 'rsi', 'Sabra04G0006300' => 'sbr', 'Sabra04G0127000' => 'sbr', 'Sabra08G0148700' => 'sbr', 'Sabra09G0117400' => 'sbr', 'SalBow1G3326' => 'sbo', 'SalBow3G3228' => 'sbo', 'SalBow6G1634' => 'sbo', 'SalBow6G3603' => 'sbo', 'SalBow6G5266' => 'sbo', 'SalBow7G2265' => 'sbo', 'SalBow8G0850' => 'sbo', 'SalBow8G2592' => 'sbo', 'Sc05g0009240' => 'sci', 'Sc12g0002300' => 'sci', 'Sc21g0000100' => 'sci', 'Sc21g0004720' => 'sci', 'Sed0002949' => 'sed', 'Sed0004114' => 'sed', 'Sed0004306' => 'sed', 'Sed0006172' => 'sed', 'Sed0008413' => 'sed', 'Sed0013809' => 'sed', 'Sed0019556' => 'sed', 'SEGI_03570' => 'sgi', 'SEGI_07859' => 'sgi', 'SEGI_15042' => 'sgi', 'SEGI_16263' => 'sgi', 'SEGI_16552' => 'sgi', 'SEGI_24331' => 'sgi', 'SEGI_27316' => 'sgi', 'SEGI_29521' => 'sgi', 'SEGI_41342' => 'sgi', 'SGA_v2.0_scaffold27G11617' => 'sas', 'SGA_v2.0_scaffold316G48428' => 'sas', 'SGA_v2.0_scaffold49G18261' => 'sas', 'SGA_v2.0_scaffold7G03831' => 'sas', 'SGA_v2.0_scaffold93G28359' => 'sas', 'SHI02210' => 'shi', 'SHI06028' => 'shi', 'SHI06321' => 'shi', 'SMO111G0012' => 'smo', 'SMO228G0080' => 'smo', 'SMO356G0756' => 'smo', 'Solyc02g080620.3' => 'sly', 'Solyc06g074530.1' => 'sly', 'Solyc11g066890.1' => 'sly', 'Solyc11g072520.3' => 'sly', 'Sopen02g025330' => 'spe', 'Sopen06g031000' => 'spe', 'Sopen09g008240' => 'spe', 'Sopen09g025210' => 'spe', 'Sopen11g026600' => 'spe', 'Sopen11g030170' => 'spe', 'Sp1g10420' => 'spa', 'Sp3g06570' => 'spa', 'Sp4g10660' => 'spa', 'Sp5g16460' => 'spa', 'Sp6g22710' => 'spa', 'TAR365G0112' => 'tar', 'TAR369G0717' => 'tar', 'TAR374G0976' => 'tar', 'TAR623G1128' => 'tar', 'TAR626G1937' => 'tar', 'TAR627G0123' => 'tar', 'TAR628G0305' => 'tar', 'TAR636G1176' => 'tar', 'TAR636G2442' => 'tar', 'THA.LOC104800556' => 'tha', 'THA.LOC104809501' => 'tha', 'THA.LOC104815126' => 'tha', 'THA.LOC104815732' => 'tha', 'THA.LOC104823528' => 'tha', 'Thecc.02G365600' => 'tca', 'Thecc.06G222300' => 'tca', 'Thecc.09G261800' => 'tca', 'Thecc.09G291400' => 'tca', 'Thhalv10003028m.g' => 'esa', 'Thhalv10007886m.g' => 'esa', 'Thhalv10016085m.g' => 'esa', 'Thhalv10016681m.g' => 'esa', 'Thhalv10020951m.g' => 'esa', 'TPR.G15598' => 'tpr', 'TPR.G29305' => 'tpr', 'TPR.G32395' => 'tpr', 'TPR.G36998' => 'tpr', 'TPR.G4227' => 'tpr', 'TWI18G1433' => 'twi', 'TWI31G0755' => 'twi', 'TWI38G0912' => 'twi', 'TWI75G1097' => 'twi', 'TWI75G1619' => 'twi', 'TWI79G1336' => 'twi', 'unitig_0.g943' => 'ugi', 'unitig_0.g944' => 'ugi', 'unitig_22.g6646' => 'ugi', 'unitig_37.g12681' => 'ugi', 'unitig_8.g3290' => 'ugi', 'vmacro03278' => 'vma', 'vmacro12197' => 'vma', 'vmacro14478' => 'vma', 'vmacro15787' => 'vma', 'vmacro15789' => 'vma', 'vmacro15790' => 'vma', 'vmacro15806' => 'vma', 'vmacro22907' => 'vma', 'vmacro22908' => 'vma', 'vmacro22909' => 'vma', 'vmacro23108' => 'vma', 'VMungo0540G0540' => 'vmu', 'VMungo0540G2468' => 'vmu', 'VMungo1080G0390' => 'vmu', 'VMungo1080G1165' => 'vmu', 'VMungo1127G0170' => 'vmu', 'VMungo1127G2099' => 'vmu', 'VMungo1215G3013' => 'vmu', 'Zm00001eb013110' => 'zma', 'Zm00001eb084260' => 'zma', 'Zm00001eb096110' => 'zma', 'Zm00001eb217510' => 'zma', 'Zm00001eb322550' => 'zma', 'Zm00001eb390770' => 'zma', 'Zm00001eb397170' => 'zma', 'Zm00001eb404610' => 'zma', 'Zm00001eb421790' => 'zma' ) $gf_id = 'HOM05D000911' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000911' ) $data_identifier = 'HOM05D000911' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 16, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 5, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 6, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 8, 'nnu' => (int) 16, 'oeu' => (int) 8, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 5, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 16, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421790' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000911', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27780' => 'bna', 'A03p35380' => 'bna', 'A04p21160' => 'bna', 'A05p40570' => 'bna', 'A06p26900' => 'bna', 'A08p33230' => 'bna', 'A09p65960' => 'bna', 'A10p18290' => 'bna', 'Aa31LG1G12990' => 'aar', 'Aa31LG1G2980' => 'aar', 'Aa31LG4G14320' => 'aar', 'Aa31LG7G11800' => 'aar', 'Aa31sc36G50' => 'aar', 'Aa31sc36G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3721' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5459' => 'aag', 'Actinidia03028' => 'ach', 'Actinidia03753' => 'ach', 'Actinidia04187' => 'ach', 'Actinidia05509' => 'ach', 'Actinidia24180' => 'ach', 'Actinidia26906' => 'ach', 'Actinidia37097' => 'ach', 'Actinidia38249' => 'ach', 'Ah.01g003470' => 'amhyb', 'Ah.01g004580' => 'amhyb', 'Ah.01g014850' => 'amhyb', 'Ah.01g016830' => 'amhyb', 'Ah.14g088000' => 'amhyb', 'AL1G22980' => 'aly', 'AL3G18990' => 'aly', 'AL4G22440' => 'aly', 'AL4G33180' => 'aly', 'AL5G22920' => 'aly', 'AL6G33660' => 'aly', 'AL8G20720' => 'aly', 'Aqoxy1G00935' => 'aox', 'Aqoxy1G02094' => 'aox', 'Aqoxy2G01239' => 'aox', 'Aqoxy4G01870' => 'aox', 'Aqoxy7G00450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.36ZVTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71EM27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5D6C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH3WRE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3NCM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RIM768' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YB5YRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z36GDV' => 'arhy', 'AT1G08250' => 'ath', 'AT1G11790' => 'ath', 'AT2G27820' => 'ath', 'AT3G07630' => 'ath', 'AT3G44720' => 'ath', 'AT5G22630' => 'ath', 'ATR0693G304' => 'atr', 'ATR0794G109' => 'atr', 'ATR0820G120' => 'atr', 'ATR1159G064' => 'atr', 'Atru.chr10.2239' => 'acertr', 'Atru.chr3.3371' => 'acertr', 'Atru.chr6.3202' => 'acertr', 'AUR62006499' => 'cqu', 'AUR62012718' => 'cqu', 'AUR62021938' => 'cqu', 'AUR62023932' => 'cqu', 'AUR62025034' => 'cqu', 'AUR62025035' => 'cqu', 'AUR62038307' => 'cqu', 'AUR62043466' => 'cqu', 'BcaB02g10748' => 'bca', 'BcaB03g13231' => 'bca', 'BcaB03g14689' => 'bca', 'BcaB05g22716' => 'bca', 'BcaB06g28172' => 'bca', 'BcaB08g36413' => 'bca', 'BcaC01g02186' => 'bca', 'BcaC01g04272' => 'bca', 'BcaC02g08080' => 'bca', 'BcaC02g08227' => 'bca', 'BcaC03g13901' => 'bca', 'BcaC04g19593' => 'bca', 'BcaC04g20874' => 'bca', 'BcaC05g29557' => 'bca', 'BcaC06g35505' => 'bca', 'BcaC07g41954' => 'bca', 'BcaC07g41955' => 'bca', 'BcaC07g41956' => 'bca', 'BcaC07g42519' => 'bca', 'BcaC07g42520' => 'bca', 'BcaC07g42523' => 'bca', 'BcaC07g42524' => 'bca', 'BcaC07g42525' => 'bca', 'BcaC08g47480' => 'bca', 'BcaC08g47481' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00530' => 'bna', 'BolC2t07178H' => 'bol', 'BolC3t16567H' => 'bol', 'BolC4t27234H' => 'bol', 'BolC5t29728H' => 'bol', 'BolC5t34622H' => 'bol', 'BolC6t40321H' => 'bol', 'BolC7t42028H' => 'bol', 'BolC8t49125H' => 'bol', 'BolC8t52538H' => 'bol', 'BolC8t52539H' => 'bol', 'BolC9t56681H' => 'bol', 'BolC9t58266H' => 'bol', 'BolSC21t60294H' => 'bol', 'BraA02t05670Z' => 'bra', 'BraA03t12716Z' => 'bra', 'BraA04t17685Z' => 'bra', 'BraA05t22788Z' => 'bra', 'BraA06t24032Z' => 'bra', 'BraA06t25625Z' => 'bra', 'BraA07t27930Z' => 'bra', 'BraA08t35242Z' => 'bra', 'BraA09t38609Z' => 'bra', 'BraA10t43905Z' => 'bra', 'C02p11060' => 'bna', 'C03p42990' => 'bna', 'C03p67310' => 'bna', 'C04p56990' => 'bna', 'C04p58660' => 'bna', 'C05p09890' => 'bna', 'C05p59680' => 'bna', 'C06p19830' => 'bna', 'C06p53040' => 'bna', 'C07p15230' => 'bna', 'C08p50070' => 'bna', 'C08p50090' => 'bna', 'C09p38330' => 'bna', 'C09p53940' => 'bna', 'CAN.G1014.1' => 'can', 'CAN.G644.30' => 'can', 'CAN.G84.47' => 'can', 'CAN.G919.8' => 'can', 'CANSAT54G0113' => 'cansat', 'CANSAT54G1286' => 'cansat', 'CANSAT64G1020' => 'cansat', 'CARHR008080' => 'chi', 'CARHR008090' => 'chi', 'CARHR012130' => 'chi', 'CARHR038390' => 'chi', 'CARHR082330' => 'chi', 'CARHR120520' => 'chi', 'CARHR151470' => 'chi', 'CARHR190950' => 'chi', 'Carub.0001s0760' => 'cru', 'Carub.0001s1146' => 'cru', 'Carub.0003s0721' => 'cru', 'Carub.0004s0858' => 'cru', 'Carub.0005s1040' => 'cru', 'Carub.0006s2035' => 'cru', 'Carub.0015s0005' => 'cru', 'Ca_01607_v3' => 'car', 'Ca_01677_v3' => 'car', 'Ca_06087_v3' => 'car', 'Ca_19238_v3' => 'car', 'Ca_19373_v3' => 'car', 'Ca_21079_v3' => 'car', 'CBR_g54016' => 'cbr', 'CBR_g54018' => 'cbr', 'CBR_g54020' => 'cbr', 'Cc01_g09780' => 'ccan', 'Cc01_g11680' => 'ccan', 'Cc02_g15610' => 'ccan', 'Cc05_g04350' => 'ccan', 'Cc09_g01580' => 'ccan', 'CDE01G0795' => 'cde', 'CDE02G2024' => 'cde', 'CDE02G2260' => 'cde', 'CDE02G4561' => 'cde', 'CDE05G2733' => 'cde', 'CDE05G3422' => 'cde', 'CDE06G2003' => 'cde', 'CDE08G0576' => 'cde', 'CDE09G0048' => 'cde', 'CDE11G0805' => 'cde', 'Cfa003644' => 'cfa', 'Cfa006290' => 'cfa', 'Cfa010080' => 'cfa', 'Cfa011376' => 'cfa', 'Cfa011576' => 'cfa', 'Cfa011577' => 'cfa', 'Cfa014389' => 'cfa', 'Ciclev10006044m.g' => 'ccl', 'Ciclev10006954m.g' => 'ccl', 'Ciclev10015131m.g' => 'ccl', 'Ciclev10015580m.g' => 'ccl', 'Ciclev10028359m.g' => 'ccl', 'Ciclev10028573m.g' => 'ccl', 'CiPaw.03G159300' => 'cil', 'CiPaw.04G115100' => 'cil', 'CiPaw.09G092800' => 'cil', 'CiPaw.10G071800' => 'cil', 'CiPaw.13G105800' => 'cil', 'CiPaw.13G141000' => 'cil', 'CiPaw.14G103400' => 'cil', 'ClCG01G012700' => 'cla', 'ClCG01G012720' => 'cla', 'ClCG01G021920' => 'cla', 'ClCG02G008870' => 'cla', 'ClCG02G020840' => 'cla', 'ClCG02G021930' => 'cla', 'COL.COLO4_19302' => 'col', 'COL.COLO4_25262' => 'col', 'COL.COLO4_31788' => 'col', 'Cpa.g.c34684' => 'cpa', 'Cpa.g.c36520.1' => 'cpa', 'Cpa.g.c45626' => 'cpa', 'Cpa.g.sc121.17' => 'cpa', 'Cpa.g.sc13.22' => 'cpa', 'Cpa.g.sc87.88' => 'cpa', 'Cre06.g261800' => 'cre', 'CsaV3_1G014500' => 'csa', 'CsaV3_1G014510' => 'csa', 'CsaV3_2G034880' => 'csa', 'CsaV3_6G014760' => 'csa', 'CsaV3_6G021500' => 'csa', 'CsaV3_6G048980' => 'csa', 'CSS0002511' => 'camsi', 'CSS0007556' => 'camsi', 'CSS0008532' => 'camsi', 'CSS0009709' => 'camsi', 'CSS0010486' => 'camsi', 'CSS0016768' => 'camsi', 'CSS0023512' => 'camsi', 'CSS0025341' => 'camsi', 'CSS0027999' => 'camsi', 'CSS0028944' => 'camsi', 'CSS0032292' => 'camsi', 'CSS0032464' => 'camsi', 'CSS0037153' => 'camsi', 'CSS0039256' => 'camsi', 'CSS0048392' => 'camsi', 'CSS0050458' => 'camsi', 'DCAR_004224' => 'dca', 'DCAR_006147' => 'dca', 'DCAR_006465' => 'dca', 'DCAR_008159' => 'dca', 'DCAR_012164' => 'dca', 'DCAR_019764' => 'dca', 'Dinv05418' => 'din', 'Dinv10839' => 'din', 'Dinv12521' => 'din', 'Dinv13900' => 'din', 'Dinv29426' => 'din', 'Duzib150G0263' => 'dzi', 'Duzib168G1178' => 'dzi', 'Duzib168G1924' => 'dzi', 'Duzib170G0299' => 'dzi', 'Duzib170G0813' => 'dzi', 'Duzib235G1128' => 'dzi', 'Duzib248G1060' => 'dzi', 'ECA232G1910' => 'eca', 'ECA233G4621' => 'eca', 'ECA238G1216' => 'eca', 'ECA238G1784' => 'eca', 'ECA248G1242' => 'eca', 'EL10Ac8g20071' => 'bvu', 'EL10Ac9g21086' => 'bvu', 'EL10Ac9g22407' => 'bvu', 'EL10Ac9g22412' => 'bvu', 'Eucgr.A01119' => 'egr', 'Eucgr.E04043' => 'egr', 'Eucgr.J00428' => 'egr', 'Eucgr.J00958' => 'egr', 'FAN11G3091' => 'fan', 'FAN11G3651' => 'fan', 'FAN16G2566' => 'fan', 'FAN21G3155' => 'fan', 'FAN21G3400' => 'fan', 'FAN21G3543' => 'fan', 'FAN25G0234' => 'fan', 'FAN25G1422' => 'fan', 'FAN25G3392' => 'fan', 'FvH4_3g01940' => 'fve', 'FvH4_3g29870' => 'fve', 'FvH4_3g33680' => 'fve', 'Glyma.09G004200' => 'gma', 'Glyma.11G151288' => 'gma', 'Glyma.11G189100' => 'gma', 'Glyma.12G072500' => 'gma', 'Glyma.12G085500' => 'gma', 'Glyma.12G181800' => 'gma', 'Glyma.12G193000' => 'gma', 'Glyma.13G309300' => 'gma', 'Glyma.13G319000' => 'gma', 'Glyma.17G012600' => 'gma', 'Gohir.A06G148600' => 'ghi', 'Gohir.A07G115800' => 'ghi', 'Gohir.A08G003600' => 'ghi', 'Gohir.A09G093300' => 'ghi', 'Gohir.A09G105400' => 'ghi', 'Gohir.A09G105500' => 'ghi', 'Gohir.D06G154600' => 'ghi', 'Gohir.D07G120200' => 'ghi', 'Gohir.D08G013900' => 'ghi', 'Gohir.D09G093100' => 'ghi', 'Gohir.D09G102200' => 'ghi', 'Gohir.D09G102300' => 'ghi', 'Gorai.001G129400' => 'gra', 'Gorai.004G008200' => 'gra', 'Gorai.006G109800' => 'gra', 'Gorai.006G119500' => 'gra', 'Gorai.006G121300' => 'gra', 'Gorai.010G180700' => 'gra', 'GSVIVG01012716001' => 'vvi', 'GSVIVG01025118001' => 'vvi', 'GSVIVG01030439001' => 'vvi', 'GSVIVG01031397001' => 'vvi', 'HanXRQChr01g0004201' => 'han', 'HanXRQChr02g0054941' => 'han', 'HanXRQChr05g0141811' => 'han', 'HanXRQChr07g0197751' => 'han', 'HanXRQChr11g0346691' => 'han', 'HanXRQChr13g0396971' => 'han', 'HanXRQChr14g0432951' => 'han', 'HanXRQChr14g0452001' => 'han', 'HanXRQChr15g0496681' => 'han', 'HanXRQChr17g0557491' => 'han', 'HanXRQChr17g0557501' => 'han', 'Haze_06809' => 'cav', 'Haze_12852' => 'cav', 'Haze_15850' => 'cav', 'Haze_23446' => 'cav', 'Haze_23942' => 'cav', 'Haze_23943' => 'cav', 'Hma1.2p1_0091F.1_g046450' => 'hma', 'Hma1.2p1_0128F.1_g059910' => 'hma', 'Hma1.2p1_0249F.1_g102260' => 'hma', 'Hma1.2p1_0453F.1_g156190' => 'hma', 'Hma1.2p1_0695F.1_g204380' => 'hma', 'Hma1.2p1_0749F.1_g212650' => 'hma', 'Hma1.2p1_2156F.1_g315420' => 'hma', 'Hma1.2p1_2686F.1_g326940' => 'hma', 'HPP92_006428' => 'vpl', 'HPP92_012069' => 'vpl', 'HPP92_014129' => 'vpl', 'HPP92_014133' => 'vpl', 'HPP92_017315' => 'vpl', 'HPP92_026445' => 'vpl', 'HPP92_026446' => 'vpl', 'Hund00774' => 'sun', 'Hund07682' => 'sun', 'Hund21413' => 'sun', 'Hund23462' => 'sun', 'Hund23463' => 'sun', 'Lalb_Chr03g0027911' => 'lal', 'Lalb_Chr13g0304271' => 'lal', 'Lalb_Chr19g0137471' => 'lal', 'Lalb_Chr22g0350651' => 'lal', 'Lalb_Chr24g0395151' => 'lal', 'Lj1A1231T40' => 'lonja', 'Lj1A221T48' => 'lonja', 'Lj1C924T12' => 'lonja', 'Lj2C993G6' => 'lonja', 'Lj3g0005790' => 'lja', 'Lj3g0015432' => 'lja', 'Lj3g0017722' => 'lja', 'Lj3g0018497' => 'lja', 'Lj4g0025071' => 'lja', 'Lsat_1_v5_gn_1_129680' => 'lsa', 'Lsat_1_v5_gn_2_25321' => 'lsa', 'Lsat_1_v5_gn_2_95461' => 'lsa', 'Lsat_1_v5_gn_4_159620' => 'lsa', 'Lsat_1_v5_gn_6_41301' => 'lsa', 'Lsat_1_v5_gn_6_74660' => 'lsa', 'Lsat_1_v5_gn_7_11520' => 'lsa', 'Lsat_1_v5_gn_9_67680' => 'lsa', 'Manes.04G008300' => 'mes', 'Manes.04G008400' => 'mes', 'Manes.04G026500' => 'mes', 'Manes.10G135300' => 'mes', 'Manes.11G157300' => 'mes', 'Manes.12G074000' => 'mes', 'Manes.16G006200' => 'mes', 'Manes.17G026400' => 'mes', 'Mapoly0024s0086' => 'mpo', 'Mapoly0024s0087' => 'mpo', 'Mapoly0071s0057' => 'mpo', 'Mapoly0204s0012' => 'mpo', 'MBI04_g37681_MAGBIO' => 'mbi', 'MBI05_g17779_MAGBIO' => 'mbi', 'MBI12_g31184_MAGBIO' => 'mbi', 'MBI17_g11083_MAGBIO' => 'mbi', 'MBI18_g03883_MAGBIO' => 'mbi', 'MBI18_g28940_MAGBIO' => 'mbi', 'MCO01G690' => 'mco', 'MD03G1109900' => 'mdo', 'MD03G1134800' => 'mdo', 'MD05G1348000' => 'mdo', 'MD10G1322400' => 'mdo', 'MD11G1123300' => 'mdo', 'MD11G1157600' => 'mdo', 'Medtr2g084875' => 'mtr', 'Medtr2g088130' => 'mtr', 'Medtr4g055310' => 'mtr', 'Medtr4g061070' => 'mtr', 'Medtr4g132250' => 'mtr', 'MELO3C004795.2' => 'cme', 'MELO3C004797.2' => 'cme', 'MELO3C007396.2' => 'cme', 'MELO3C019277.2' => 'cme', 'MELO3C021449.2' => 'cme', 'MELO3C025736.2' => 'cme', 'Migut.D02175' => 'egut', 'Migut.H01573' => 'egut', 'Migut.M01327' => 'egut', 'Migut.N02513' => 'egut', 'MSTRG.14638' => 'ama', 'MSTRG.18632' => 'ama', 'MSTRG.7203' => 'ama', 'Nitab4.5_0000533g0140' => 'nta', 'Nitab4.5_0000888g0150' => 'nta', 'Nitab4.5_0001453g0040' => 'nta', 'Nitab4.5_0002827g0090' => 'nta', 'Nitab4.5_0003082g0040' => 'nta', 'Nitab4.5_0007799g0040' => 'nta', 'Nitab4.5_0008983g0010' => 'nta', 'Nitab4.5_0009017g0020' => 'nta', 'Nn1g02132' => 'nnu', 'Nn1g03492' => 'nnu', 'Nn1g03493' => 'nnu', 'Nn1g03494' => 'nnu', 'Nn1g07164' => 'nnu', 'Nn1g07291' => 'nnu', 'Nn2g10655' => 'nnu', 'Nn2g11652' => 'nnu', 'Nn2g14008' => 'nnu', 'Nn3g17476' => 'nnu', 'Nn3g17477' => 'nnu', 'Nn4g22370' => 'nnu', 'Nn4g25255' => 'nnu', 'Nn5g27755' => 'nnu', 'Nn6g34260' => 'nnu', 'Nn6g35041' => 'nnu', 'Oeu005924.1' => 'oeu', 'Oeu008383.1' => 'oeu', 'Oeu014928.1' => 'oeu', 'Oeu019889.1' => 'oeu', 'Oeu022271.1' => 'oeu', 'Oeu025271.1' => 'oeu', 'Oeu036302.1' => 'oeu', 'Oeu044100.1' => 'oeu', 'Os01g0528300' => 'osa', 'Os03g0286200' => 'osa', 'Os04g0406600' => 'osa', 'Os07g0512000' => 'osa', 'Os07g0694600' => 'osa', 'Os08g0411000' => 'osa', 'Os09g0565700' => 'osa', 'Os09g0566050' => 'osa', 'Os10g0523700' => 'osa', 'Peaxi162Scf00002g00514' => 'pax', 'Peaxi162Scf00047g01817' => 'pax', 'Peaxi162Scf00114g00001' => 'pax', 'Peaxi162Scf00147g00613' => 'pax', 'Peaxi162Scf00389g00425' => 'pax', 'PGR042G1139' => 'pgr', 'PGR042G3273' => 'pgr', 'PGR102G2180' => 'pgr', 'PGR119G0234' => 'pgr', 'PGR119G0668' => 'pgr', 'PGSC0003DMG400007122' => 'stu', 'PGSC0003DMG400016478' => 'stu', 'PGSC0003DMG400025374' => 'stu', 'PGSC0003DMG400026536' => 'stu', 'Phvul.003G079600' => 'pvu', 'Phvul.005G115600' => 'pvu', 'Phvul.005G127100' => 'pvu', 'Phvul.006G149500' => 'pvu', 'Phvul.006G149600' => 'pvu', 'Phvul.011G071800' => 'pvu', 'Phvul.011G090400' => 'pvu', 'Potri.004G013400' => 'ptr', 'Potri.004G188100' => 'ptr', 'Potri.008G195500' => 'ptr', 'Potri.009G148800' => 'ptr', 'Potri.011G004700' => 'ptr', 'Pp3c17_22810' => 'ppa', 'Pp3c18_4480' => 'ppa', 'Pp3c19_13030' => 'ppa', 'Pp3c1_33620' => 'ppa', 'Pp3c2_9380' => 'ppa', 'PRCOL_00001023' => 'pco', 'Prupe.3G216300' => 'ppe', 'Prupe.4G019500' => 'ppe', 'Prupe.6G092500' => 'ppe', 'Prupe.6G119200' => 'ppe', 'Psat0s1945g0080' => 'psa', 'Psat0s4167g0040' => 'psa', 'Psat1g185800' => 'psa', 'Psat4g006440' => 'psa', 'Psat4g006480' => 'psa', 'Psat4g168120' => 'psa', 'Psat5g255680' => 'psa', 'Psat5g261760' => 'psa', 'Psat7g222120' => 'psa', 'PSO063G7252' => 'pso', 'PSO170G4778' => 'pso', 'PSO210G2249' => 'pso', 'PSO339G2411' => 'pso', 'PSO339G2457' => 'pso', 'PSO339G2854' => 'pso', 'PSO339G4288' => 'pso', 'PSO339G4615' => 'pso', 'PSO384G2796' => 'pso', 'PSO384G2940' => 'pso', 'PSO384G4227' => 'pso', 'PSO478G1425' => 'pso', 'PSO541G3863' => 'pso', 'PSO675G0507' => 'pso', 'PSO782G0338' => 'pso', 'PSO832G0644' => 'pso', 'QL01p013664' => 'qlo', 'QL01p036598' => 'qlo', 'QL05p072984' => 'qlo', 'QL08p005768' => 'qlo', 'QL08p032743' => 'qlo', 'QL93p0073_0439' => 'qlo', 'QL93p0073_0444' => 'qlo', 'RcHm_v2.0_Chr5g0002851' => 'rch', 'RcHm_v2.0_Chr5g0055201' => 'rch', 'RcHm_v2.0_Chr5g0061191' => 'rch', 'RcHm_v2.0_Chr7g0203231' => 'rch', 'Rhsim01G0208100' => 'rsi', 'Rhsim01G0208200' => 'rsi', 'Rhsim02G0106500' => 'rsi', 'Rhsim03G0107900' => 'rsi', 'Rhsim06G0163400' => 'rsi', 'Rhsim13G0105200' => 'rsi', 'Sabra04G0006300' => 'sbr', 'Sabra04G0127000' => 'sbr', 'Sabra08G0148700' => 'sbr', 'Sabra09G0117400' => 'sbr', 'SalBow1G3326' => 'sbo', 'SalBow3G3228' => 'sbo', 'SalBow6G1634' => 'sbo', 'SalBow6G3603' => 'sbo', 'SalBow6G5266' => 'sbo', 'SalBow7G2265' => 'sbo', 'SalBow8G0850' => 'sbo', 'SalBow8G2592' => 'sbo', 'Sc05g0009240' => 'sci', 'Sc12g0002300' => 'sci', 'Sc21g0000100' => 'sci', 'Sc21g0004720' => 'sci', 'Sed0002949' => 'sed', 'Sed0004114' => 'sed', 'Sed0004306' => 'sed', 'Sed0006172' => 'sed', 'Sed0008413' => 'sed', 'Sed0013809' => 'sed', 'Sed0019556' => 'sed', 'SEGI_03570' => 'sgi', 'SEGI_07859' => 'sgi', 'SEGI_15042' => 'sgi', 'SEGI_16263' => 'sgi', 'SEGI_16552' => 'sgi', 'SEGI_24331' => 'sgi', 'SEGI_27316' => 'sgi', 'SEGI_29521' => 'sgi', 'SEGI_41342' => 'sgi', 'SGA_v2.0_scaffold27G11617' => 'sas', 'SGA_v2.0_scaffold316G48428' => 'sas', 'SGA_v2.0_scaffold49G18261' => 'sas', 'SGA_v2.0_scaffold7G03831' => 'sas', 'SGA_v2.0_scaffold93G28359' => 'sas', 'SHI02210' => 'shi', 'SHI06028' => 'shi', 'SHI06321' => 'shi', 'SMO111G0012' => 'smo', 'SMO228G0080' => 'smo', 'SMO356G0756' => 'smo', 'Solyc02g080620.3' => 'sly', 'Solyc06g074530.1' => 'sly', 'Solyc11g066890.1' => 'sly', 'Solyc11g072520.3' => 'sly', 'Sopen02g025330' => 'spe', 'Sopen06g031000' => 'spe', 'Sopen09g008240' => 'spe', 'Sopen09g025210' => 'spe', 'Sopen11g026600' => 'spe', 'Sopen11g030170' => 'spe', 'Sp1g10420' => 'spa', 'Sp3g06570' => 'spa', 'Sp4g10660' => 'spa', 'Sp5g16460' => 'spa', 'Sp6g22710' => 'spa', 'TAR365G0112' => 'tar', 'TAR369G0717' => 'tar', 'TAR374G0976' => 'tar', 'TAR623G1128' => 'tar', 'TAR626G1937' => 'tar', 'TAR627G0123' => 'tar', 'TAR628G0305' => 'tar', 'TAR636G1176' => 'tar', 'TAR636G2442' => 'tar', 'THA.LOC104800556' => 'tha', 'THA.LOC104809501' => 'tha', 'THA.LOC104815126' => 'tha', 'THA.LOC104815732' => 'tha', 'THA.LOC104823528' => 'tha', 'Thecc.02G365600' => 'tca', 'Thecc.06G222300' => 'tca', 'Thecc.09G261800' => 'tca', 'Thecc.09G291400' => 'tca', 'Thhalv10003028m.g' => 'esa', 'Thhalv10007886m.g' => 'esa', 'Thhalv10016085m.g' => 'esa', 'Thhalv10016681m.g' => 'esa', 'Thhalv10020951m.g' => 'esa', 'TPR.G15598' => 'tpr', 'TPR.G29305' => 'tpr', 'TPR.G32395' => 'tpr', 'TPR.G36998' => 'tpr', 'TPR.G4227' => 'tpr', 'TWI18G1433' => 'twi', 'TWI31G0755' => 'twi', 'TWI38G0912' => 'twi', 'TWI75G1097' => 'twi', 'TWI75G1619' => 'twi', 'TWI79G1336' => 'twi', 'unitig_0.g943' => 'ugi', 'unitig_0.g944' => 'ugi', 'unitig_22.g6646' => 'ugi', 'unitig_37.g12681' => 'ugi', 'unitig_8.g3290' => 'ugi', 'vmacro03278' => 'vma', 'vmacro12197' => 'vma', 'vmacro14478' => 'vma', 'vmacro15787' => 'vma', 'vmacro15789' => 'vma', 'vmacro15790' => 'vma', 'vmacro15806' => 'vma', 'vmacro22907' => 'vma', 'vmacro22908' => 'vma', 'vmacro22909' => 'vma', 'vmacro23108' => 'vma', 'VMungo0540G0540' => 'vmu', 'VMungo0540G2468' => 'vmu', 'VMungo1080G0390' => 'vmu', 'VMungo1080G1165' => 'vmu', 'VMungo1127G0170' => 'vmu', 'VMungo1127G2099' => 'vmu', 'VMungo1215G3013' => 'vmu', 'Zm00001eb013110' => 'zma', 'Zm00001eb084260' => 'zma', 'Zm00001eb096110' => 'zma', 'Zm00001eb217510' => 'zma', 'Zm00001eb322550' => 'zma', 'Zm00001eb390770' => 'zma', 'Zm00001eb397170' => 'zma', 'Zm00001eb404610' => 'zma', 'Zm00001eb421790' => 'zma' ), 'gf_id' => 'HOM05D000911', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000911' ), 'data_identifier' => 'HOM05D000911', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000911', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27780' => 'bna', 'A03p35380' => 'bna', 'A04p21160' => 'bna', 'A05p40570' => 'bna', 'A06p26900' => 'bna', 'A08p33230' => 'bna', 'A09p65960' => 'bna', 'A10p18290' => 'bna', 'Aa31LG1G12990' => 'aar', 'Aa31LG1G2980' => 'aar', 'Aa31LG4G14320' => 'aar', 'Aa31LG7G11800' => 'aar', 'Aa31sc36G50' => 'aar', 'Aa31sc36G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3721' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5459' => 'aag', 'Actinidia03028' => 'ach', 'Actinidia03753' => 'ach', 'Actinidia04187' => 'ach', 'Actinidia05509' => 'ach', 'Actinidia24180' => 'ach', 'Actinidia26906' => 'ach', 'Actinidia37097' => 'ach', 'Actinidia38249' => 'ach', 'Ah.01g003470' => 'amhyb', 'Ah.01g004580' => 'amhyb', 'Ah.01g014850' => 'amhyb', 'Ah.01g016830' => 'amhyb', 'Ah.14g088000' => 'amhyb', 'AL1G22980' => 'aly', 'AL3G18990' => 'aly', 'AL4G22440' => 'aly', 'AL4G33180' => 'aly', 'AL5G22920' => 'aly', 'AL6G33660' => 'aly', 'AL8G20720' => 'aly', 'Aqoxy1G00935' => 'aox', 'Aqoxy1G02094' => 'aox', 'Aqoxy2G01239' => 'aox', 'Aqoxy4G01870' => 'aox', 'Aqoxy7G00450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.36ZVTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71EM27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5D6C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH3WRE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3NCM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RIM768' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YB5YRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z36GDV' => 'arhy', 'AT1G08250' => 'ath', 'AT1G11790' => 'ath', 'AT2G27820' => 'ath', 'AT3G07630' => 'ath', 'AT3G44720' => 'ath', 'AT5G22630' => 'ath', 'ATR0693G304' => 'atr', 'ATR0794G109' => 'atr', 'ATR0820G120' => 'atr', 'ATR1159G064' => 'atr', 'Atru.chr10.2239' => 'acertr', 'Atru.chr3.3371' => 'acertr', 'Atru.chr6.3202' => 'acertr', 'AUR62006499' => 'cqu', 'AUR62012718' => 'cqu', 'AUR62021938' => 'cqu', 'AUR62023932' => 'cqu', 'AUR62025034' => 'cqu', 'AUR62025035' => 'cqu', 'AUR62038307' => 'cqu', 'AUR62043466' => 'cqu', 'BcaB02g10748' => 'bca', 'BcaB03g13231' => 'bca', 'BcaB03g14689' => 'bca', 'BcaB05g22716' => 'bca', 'BcaB06g28172' => 'bca', 'BcaB08g36413' => 'bca', 'BcaC01g02186' => 'bca', 'BcaC01g04272' => 'bca', 'BcaC02g08080' => 'bca', 'BcaC02g08227' => 'bca', 'BcaC03g13901' => 'bca', 'BcaC04g19593' => 'bca', 'BcaC04g20874' => 'bca', 'BcaC05g29557' => 'bca', 'BcaC06g35505' => 'bca', 'BcaC07g41954' => 'bca', 'BcaC07g41955' => 'bca', 'BcaC07g41956' => 'bca', 'BcaC07g42519' => 'bca', 'BcaC07g42520' => 'bca', 'BcaC07g42523' => 'bca', 'BcaC07g42524' => 'bca', 'BcaC07g42525' => 'bca', 'BcaC08g47480' => 'bca', 'BcaC08g47481' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00530' => 'bna', 'BolC2t07178H' => 'bol', 'BolC3t16567H' => 'bol', 'BolC4t27234H' => 'bol', 'BolC5t29728H' => 'bol', 'BolC5t34622H' => 'bol', 'BolC6t40321H' => 'bol', 'BolC7t42028H' => 'bol', 'BolC8t49125H' => 'bol', 'BolC8t52538H' => 'bol', 'BolC8t52539H' => 'bol', 'BolC9t56681H' => 'bol', 'BolC9t58266H' => 'bol', 'BolSC21t60294H' => 'bol', 'BraA02t05670Z' => 'bra', 'BraA03t12716Z' => 'bra', 'BraA04t17685Z' => 'bra', 'BraA05t22788Z' => 'bra', 'BraA06t24032Z' => 'bra', 'BraA06t25625Z' => 'bra', 'BraA07t27930Z' => 'bra', 'BraA08t35242Z' => 'bra', 'BraA09t38609Z' => 'bra', 'BraA10t43905Z' => 'bra', 'C02p11060' => 'bna', 'C03p42990' => 'bna', 'C03p67310' => 'bna', 'C04p56990' => 'bna', 'C04p58660' => 'bna', 'C05p09890' => 'bna', 'C05p59680' => 'bna', 'C06p19830' => 'bna', 'C06p53040' => 'bna', 'C07p15230' => 'bna', 'C08p50070' => 'bna', 'C08p50090' => 'bna', 'C09p38330' => 'bna', 'C09p53940' => 'bna', 'CAN.G1014.1' => 'can', 'CAN.G644.30' => 'can', 'CAN.G84.47' => 'can', 'CAN.G919.8' => 'can', 'CANSAT54G0113' => 'cansat', 'CANSAT54G1286' => 'cansat', 'CANSAT64G1020' => 'cansat', 'CARHR008080' => 'chi', 'CARHR008090' => 'chi', 'CARHR012130' => 'chi', 'CARHR038390' => 'chi', 'CARHR082330' => 'chi', 'CARHR120520' => 'chi', 'CARHR151470' => 'chi', 'CARHR190950' => 'chi', 'Carub.0001s0760' => 'cru', 'Carub.0001s1146' => 'cru', 'Carub.0003s0721' => 'cru', 'Carub.0004s0858' => 'cru', 'Carub.0005s1040' => 'cru', 'Carub.0006s2035' => 'cru', 'Carub.0015s0005' => 'cru', 'Ca_01607_v3' => 'car', 'Ca_01677_v3' => 'car', 'Ca_06087_v3' => 'car', 'Ca_19238_v3' => 'car', 'Ca_19373_v3' => 'car', 'Ca_21079_v3' => 'car', 'CBR_g54016' => 'cbr', 'CBR_g54018' => 'cbr', 'CBR_g54020' => 'cbr', 'Cc01_g09780' => 'ccan', 'Cc01_g11680' => 'ccan', 'Cc02_g15610' => 'ccan', 'Cc05_g04350' => 'ccan', 'Cc09_g01580' => 'ccan', 'CDE01G0795' => 'cde', 'CDE02G2024' => 'cde', 'CDE02G2260' => 'cde', 'CDE02G4561' => 'cde', 'CDE05G2733' => 'cde', 'CDE05G3422' => 'cde', 'CDE06G2003' => 'cde', 'CDE08G0576' => 'cde', 'CDE09G0048' => 'cde', 'CDE11G0805' => 'cde', 'Cfa003644' => 'cfa', 'Cfa006290' => 'cfa', 'Cfa010080' => 'cfa', 'Cfa011376' => 'cfa', 'Cfa011576' => 'cfa', 'Cfa011577' => 'cfa', 'Cfa014389' => 'cfa', 'Ciclev10006044m.g' => 'ccl', 'Ciclev10006954m.g' => 'ccl', 'Ciclev10015131m.g' => 'ccl', 'Ciclev10015580m.g' => 'ccl', 'Ciclev10028359m.g' => 'ccl', 'Ciclev10028573m.g' => 'ccl', 'CiPaw.03G159300' => 'cil', 'CiPaw.04G115100' => 'cil', 'CiPaw.09G092800' => 'cil', 'CiPaw.10G071800' => 'cil', 'CiPaw.13G105800' => 'cil', 'CiPaw.13G141000' => 'cil', 'CiPaw.14G103400' => 'cil', 'ClCG01G012700' => 'cla', 'ClCG01G012720' => 'cla', 'ClCG01G021920' => 'cla', 'ClCG02G008870' => 'cla', 'ClCG02G020840' => 'cla', 'ClCG02G021930' => 'cla', 'COL.COLO4_19302' => 'col', 'COL.COLO4_25262' => 'col', 'COL.COLO4_31788' => 'col', 'Cpa.g.c34684' => 'cpa', 'Cpa.g.c36520.1' => 'cpa', 'Cpa.g.c45626' => 'cpa', 'Cpa.g.sc121.17' => 'cpa', 'Cpa.g.sc13.22' => 'cpa', 'Cpa.g.sc87.88' => 'cpa', 'Cre06.g261800' => 'cre', 'CsaV3_1G014500' => 'csa', 'CsaV3_1G014510' => 'csa', 'CsaV3_2G034880' => 'csa', 'CsaV3_6G014760' => 'csa', 'CsaV3_6G021500' => 'csa', 'CsaV3_6G048980' => 'csa', 'CSS0002511' => 'camsi', 'CSS0007556' => 'camsi', 'CSS0008532' => 'camsi', 'CSS0009709' => 'camsi', 'CSS0010486' => 'camsi', 'CSS0016768' => 'camsi', 'CSS0023512' => 'camsi', 'CSS0025341' => 'camsi', 'CSS0027999' => 'camsi', 'CSS0028944' => 'camsi', 'CSS0032292' => 'camsi', 'CSS0032464' => 'camsi', 'CSS0037153' => 'camsi', 'CSS0039256' => 'camsi', 'CSS0048392' => 'camsi', 'CSS0050458' => 'camsi', 'DCAR_004224' => 'dca', 'DCAR_006147' => 'dca', 'DCAR_006465' => 'dca', 'DCAR_008159' => 'dca', 'DCAR_012164' => 'dca', 'DCAR_019764' => 'dca', 'Dinv05418' => 'din', 'Dinv10839' => 'din', 'Dinv12521' => 'din', 'Dinv13900' => 'din', 'Dinv29426' => 'din', 'Duzib150G0263' => 'dzi', 'Duzib168G1178' => 'dzi', 'Duzib168G1924' => 'dzi', 'Duzib170G0299' => 'dzi', 'Duzib170G0813' => 'dzi', 'Duzib235G1128' => 'dzi', 'Duzib248G1060' => 'dzi', 'ECA232G1910' => 'eca', 'ECA233G4621' => 'eca', 'ECA238G1216' => 'eca', 'ECA238G1784' => 'eca', 'ECA248G1242' => 'eca', 'EL10Ac8g20071' => 'bvu', 'EL10Ac9g21086' => 'bvu', 'EL10Ac9g22407' => 'bvu', 'EL10Ac9g22412' => 'bvu', 'Eucgr.A01119' => 'egr', 'Eucgr.E04043' => 'egr', 'Eucgr.J00428' => 'egr', 'Eucgr.J00958' => 'egr', 'FAN11G3091' => 'fan', 'FAN11G3651' => 'fan', 'FAN16G2566' => 'fan', 'FAN21G3155' => 'fan', 'FAN21G3400' => 'fan', 'FAN21G3543' => 'fan', 'FAN25G0234' => 'fan', 'FAN25G1422' => 'fan', 'FAN25G3392' => 'fan', 'FvH4_3g01940' => 'fve', 'FvH4_3g29870' => 'fve', 'FvH4_3g33680' => 'fve', 'Glyma.09G004200' => 'gma', 'Glyma.11G151288' => 'gma', 'Glyma.11G189100' => 'gma', 'Glyma.12G072500' => 'gma', 'Glyma.12G085500' => 'gma', 'Glyma.12G181800' => 'gma', 'Glyma.12G193000' => 'gma', 'Glyma.13G309300' => 'gma', 'Glyma.13G319000' => 'gma', 'Glyma.17G012600' => 'gma', 'Gohir.A06G148600' => 'ghi', 'Gohir.A07G115800' => 'ghi', 'Gohir.A08G003600' => 'ghi', 'Gohir.A09G093300' => 'ghi', 'Gohir.A09G105400' => 'ghi', 'Gohir.A09G105500' => 'ghi', 'Gohir.D06G154600' => 'ghi', 'Gohir.D07G120200' => 'ghi', 'Gohir.D08G013900' => 'ghi', 'Gohir.D09G093100' => 'ghi', 'Gohir.D09G102200' => 'ghi', 'Gohir.D09G102300' => 'ghi', 'Gorai.001G129400' => 'gra', 'Gorai.004G008200' => 'gra', 'Gorai.006G109800' => 'gra', 'Gorai.006G119500' => 'gra', 'Gorai.006G121300' => 'gra', 'Gorai.010G180700' => 'gra', 'GSVIVG01012716001' => 'vvi', 'GSVIVG01025118001' => 'vvi', 'GSVIVG01030439001' => 'vvi', 'GSVIVG01031397001' => 'vvi', 'HanXRQChr01g0004201' => 'han', 'HanXRQChr02g0054941' => 'han', 'HanXRQChr05g0141811' => 'han', 'HanXRQChr07g0197751' => 'han', 'HanXRQChr11g0346691' => 'han', 'HanXRQChr13g0396971' => 'han', 'HanXRQChr14g0432951' => 'han', 'HanXRQChr14g0452001' => 'han', 'HanXRQChr15g0496681' => 'han', 'HanXRQChr17g0557491' => 'han', 'HanXRQChr17g0557501' => 'han', 'Haze_06809' => 'cav', 'Haze_12852' => 'cav', 'Haze_15850' => 'cav', 'Haze_23446' => 'cav', 'Haze_23942' => 'cav', 'Haze_23943' => 'cav', 'Hma1.2p1_0091F.1_g046450' => 'hma', 'Hma1.2p1_0128F.1_g059910' => 'hma', 'Hma1.2p1_0249F.1_g102260' => 'hma', 'Hma1.2p1_0453F.1_g156190' => 'hma', 'Hma1.2p1_0695F.1_g204380' => 'hma', 'Hma1.2p1_0749F.1_g212650' => 'hma', 'Hma1.2p1_2156F.1_g315420' => 'hma', 'Hma1.2p1_2686F.1_g326940' => 'hma', 'HPP92_006428' => 'vpl', 'HPP92_012069' => 'vpl', 'HPP92_014129' => 'vpl', 'HPP92_014133' => 'vpl', 'HPP92_017315' => 'vpl', 'HPP92_026445' => 'vpl', 'HPP92_026446' => 'vpl', 'Hund00774' => 'sun', 'Hund07682' => 'sun', 'Hund21413' => 'sun', 'Hund23462' => 'sun', 'Hund23463' => 'sun', 'Lalb_Chr03g0027911' => 'lal', 'Lalb_Chr13g0304271' => 'lal', 'Lalb_Chr19g0137471' => 'lal', 'Lalb_Chr22g0350651' => 'lal', 'Lalb_Chr24g0395151' => 'lal', 'Lj1A1231T40' => 'lonja', 'Lj1A221T48' => 'lonja', 'Lj1C924T12' => 'lonja', 'Lj2C993G6' => 'lonja', 'Lj3g0005790' => 'lja', 'Lj3g0015432' => 'lja', 'Lj3g0017722' => 'lja', 'Lj3g0018497' => 'lja', 'Lj4g0025071' => 'lja', 'Lsat_1_v5_gn_1_129680' => 'lsa', 'Lsat_1_v5_gn_2_25321' => 'lsa', 'Lsat_1_v5_gn_2_95461' => 'lsa', 'Lsat_1_v5_gn_4_159620' => 'lsa', 'Lsat_1_v5_gn_6_41301' => 'lsa', 'Lsat_1_v5_gn_6_74660' => 'lsa', 'Lsat_1_v5_gn_7_11520' => 'lsa', 'Lsat_1_v5_gn_9_67680' => 'lsa', 'Manes.04G008300' => 'mes', 'Manes.04G008400' => 'mes', 'Manes.04G026500' => 'mes', 'Manes.10G135300' => 'mes', 'Manes.11G157300' => 'mes', 'Manes.12G074000' => 'mes', 'Manes.16G006200' => 'mes', 'Manes.17G026400' => 'mes', 'Mapoly0024s0086' => 'mpo', 'Mapoly0024s0087' => 'mpo', 'Mapoly0071s0057' => 'mpo', 'Mapoly0204s0012' => 'mpo', 'MBI04_g37681_MAGBIO' => 'mbi', 'MBI05_g17779_MAGBIO' => 'mbi', 'MBI12_g31184_MAGBIO' => 'mbi', 'MBI17_g11083_MAGBIO' => 'mbi', 'MBI18_g03883_MAGBIO' => 'mbi', 'MBI18_g28940_MAGBIO' => 'mbi', 'MCO01G690' => 'mco', 'MD03G1109900' => 'mdo', 'MD03G1134800' => 'mdo', 'MD05G1348000' => 'mdo', 'MD10G1322400' => 'mdo', 'MD11G1123300' => 'mdo', 'MD11G1157600' => 'mdo', 'Medtr2g084875' => 'mtr', 'Medtr2g088130' => 'mtr', 'Medtr4g055310' => 'mtr', 'Medtr4g061070' => 'mtr', 'Medtr4g132250' => 'mtr', 'MELO3C004795.2' => 'cme', 'MELO3C004797.2' => 'cme', 'MELO3C007396.2' => 'cme', 'MELO3C019277.2' => 'cme', 'MELO3C021449.2' => 'cme', 'MELO3C025736.2' => 'cme', 'Migut.D02175' => 'egut', 'Migut.H01573' => 'egut', 'Migut.M01327' => 'egut', 'Migut.N02513' => 'egut', 'MSTRG.14638' => 'ama', 'MSTRG.18632' => 'ama', 'MSTRG.7203' => 'ama', 'Nitab4.5_0000533g0140' => 'nta', 'Nitab4.5_0000888g0150' => 'nta', 'Nitab4.5_0001453g0040' => 'nta', 'Nitab4.5_0002827g0090' => 'nta', 'Nitab4.5_0003082g0040' => 'nta', 'Nitab4.5_0007799g0040' => 'nta', 'Nitab4.5_0008983g0010' => 'nta', 'Nitab4.5_0009017g0020' => 'nta', 'Nn1g02132' => 'nnu', 'Nn1g03492' => 'nnu', 'Nn1g03493' => 'nnu', 'Nn1g03494' => 'nnu', 'Nn1g07164' => 'nnu', 'Nn1g07291' => 'nnu', 'Nn2g10655' => 'nnu', 'Nn2g11652' => 'nnu', 'Nn2g14008' => 'nnu', 'Nn3g17476' => 'nnu', 'Nn3g17477' => 'nnu', 'Nn4g22370' => 'nnu', 'Nn4g25255' => 'nnu', 'Nn5g27755' => 'nnu', 'Nn6g34260' => 'nnu', 'Nn6g35041' => 'nnu', 'Oeu005924.1' => 'oeu', 'Oeu008383.1' => 'oeu', 'Oeu014928.1' => 'oeu', 'Oeu019889.1' => 'oeu', 'Oeu022271.1' => 'oeu', 'Oeu025271.1' => 'oeu', 'Oeu036302.1' => 'oeu', 'Oeu044100.1' => 'oeu', 'Os01g0528300' => 'osa', 'Os03g0286200' => 'osa', 'Os04g0406600' => 'osa', 'Os07g0512000' => 'osa', 'Os07g0694600' => 'osa', 'Os08g0411000' => 'osa', 'Os09g0565700' => 'osa', 'Os09g0566050' => 'osa', 'Os10g0523700' => 'osa', 'Peaxi162Scf00002g00514' => 'pax', 'Peaxi162Scf00047g01817' => 'pax', 'Peaxi162Scf00114g00001' => 'pax', 'Peaxi162Scf00147g00613' => 'pax', 'Peaxi162Scf00389g00425' => 'pax', 'PGR042G1139' => 'pgr', 'PGR042G3273' => 'pgr', 'PGR102G2180' => 'pgr', 'PGR119G0234' => 'pgr', 'PGR119G0668' => 'pgr', 'PGSC0003DMG400007122' => 'stu', 'PGSC0003DMG400016478' => 'stu', 'PGSC0003DMG400025374' => 'stu', 'PGSC0003DMG400026536' => 'stu', 'Phvul.003G079600' => 'pvu', 'Phvul.005G115600' => 'pvu', 'Phvul.005G127100' => 'pvu', 'Phvul.006G149500' => 'pvu', 'Phvul.006G149600' => 'pvu', 'Phvul.011G071800' => 'pvu', 'Phvul.011G090400' => 'pvu', 'Potri.004G013400' => 'ptr', 'Potri.004G188100' => 'ptr', 'Potri.008G195500' => 'ptr', 'Potri.009G148800' => 'ptr', 'Potri.011G004700' => 'ptr', 'Pp3c17_22810' => 'ppa', 'Pp3c18_4480' => 'ppa', 'Pp3c19_13030' => 'ppa', 'Pp3c1_33620' => 'ppa', 'Pp3c2_9380' => 'ppa', 'PRCOL_00001023' => 'pco', 'Prupe.3G216300' => 'ppe', 'Prupe.4G019500' => 'ppe', 'Prupe.6G092500' => 'ppe', 'Prupe.6G119200' => 'ppe', 'Psat0s1945g0080' => 'psa', 'Psat0s4167g0040' => 'psa', 'Psat1g185800' => 'psa', 'Psat4g006440' => 'psa', 'Psat4g006480' => 'psa', 'Psat4g168120' => 'psa', 'Psat5g255680' => 'psa', 'Psat5g261760' => 'psa', 'Psat7g222120' => 'psa', 'PSO063G7252' => 'pso', 'PSO170G4778' => 'pso', 'PSO210G2249' => 'pso', 'PSO339G2411' => 'pso', 'PSO339G2457' => 'pso', 'PSO339G2854' => 'pso', 'PSO339G4288' => 'pso', 'PSO339G4615' => 'pso', 'PSO384G2796' => 'pso', 'PSO384G2940' => 'pso', 'PSO384G4227' => 'pso', 'PSO478G1425' => 'pso', 'PSO541G3863' => 'pso', 'PSO675G0507' => 'pso', 'PSO782G0338' => 'pso', 'PSO832G0644' => 'pso', 'QL01p013664' => 'qlo', 'QL01p036598' => 'qlo', 'QL05p072984' => 'qlo', 'QL08p005768' => 'qlo', 'QL08p032743' => 'qlo', 'QL93p0073_0439' => 'qlo', 'QL93p0073_0444' => 'qlo', 'RcHm_v2.0_Chr5g0002851' => 'rch', 'RcHm_v2.0_Chr5g0055201' => 'rch', 'RcHm_v2.0_Chr5g0061191' => 'rch', 'RcHm_v2.0_Chr7g0203231' => 'rch', 'Rhsim01G0208100' => 'rsi', 'Rhsim01G0208200' => 'rsi', 'Rhsim02G0106500' => 'rsi', 'Rhsim03G0107900' => 'rsi', 'Rhsim06G0163400' => 'rsi', 'Rhsim13G0105200' => 'rsi', 'Sabra04G0006300' => 'sbr', 'Sabra04G0127000' => 'sbr', 'Sabra08G0148700' => 'sbr', 'Sabra09G0117400' => 'sbr', 'SalBow1G3326' => 'sbo', 'SalBow3G3228' => 'sbo', 'SalBow6G1634' => 'sbo', 'SalBow6G3603' => 'sbo', 'SalBow6G5266' => 'sbo', 'SalBow7G2265' => 'sbo', 'SalBow8G0850' => 'sbo', 'SalBow8G2592' => 'sbo', 'Sc05g0009240' => 'sci', 'Sc12g0002300' => 'sci', 'Sc21g0000100' => 'sci', 'Sc21g0004720' => 'sci', 'Sed0002949' => 'sed', 'Sed0004114' => 'sed', 'Sed0004306' => 'sed', 'Sed0006172' => 'sed', 'Sed0008413' => 'sed', 'Sed0013809' => 'sed', 'Sed0019556' => 'sed', 'SEGI_03570' => 'sgi', 'SEGI_07859' => 'sgi', 'SEGI_15042' => 'sgi', 'SEGI_16263' => 'sgi', 'SEGI_16552' => 'sgi', 'SEGI_24331' => 'sgi', 'SEGI_27316' => 'sgi', 'SEGI_29521' => 'sgi', 'SEGI_41342' => 'sgi', 'SGA_v2.0_scaffold27G11617' => 'sas', 'SGA_v2.0_scaffold316G48428' => 'sas', 'SGA_v2.0_scaffold49G18261' => 'sas', 'SGA_v2.0_scaffold7G03831' => 'sas', 'SGA_v2.0_scaffold93G28359' => 'sas', 'SHI02210' => 'shi', 'SHI06028' => 'shi', 'SHI06321' => 'shi', 'SMO111G0012' => 'smo', 'SMO228G0080' => 'smo', 'SMO356G0756' => 'smo', 'Solyc02g080620.3' => 'sly', 'Solyc06g074530.1' => 'sly', 'Solyc11g066890.1' => 'sly', 'Solyc11g072520.3' => 'sly', 'Sopen02g025330' => 'spe', 'Sopen06g031000' => 'spe', 'Sopen09g008240' => 'spe', 'Sopen09g025210' => 'spe', 'Sopen11g026600' => 'spe', 'Sopen11g030170' => 'spe', 'Sp1g10420' => 'spa', 'Sp3g06570' => 'spa', 'Sp4g10660' => 'spa', 'Sp5g16460' => 'spa', 'Sp6g22710' => 'spa', 'TAR365G0112' => 'tar', 'TAR369G0717' => 'tar', 'TAR374G0976' => 'tar', 'TAR623G1128' => 'tar', 'TAR626G1937' => 'tar', 'TAR627G0123' => 'tar', 'TAR628G0305' => 'tar', 'TAR636G1176' => 'tar', 'TAR636G2442' => 'tar', 'THA.LOC104800556' => 'tha', 'THA.LOC104809501' => 'tha', 'THA.LOC104815126' => 'tha', 'THA.LOC104815732' => 'tha', 'THA.LOC104823528' => 'tha', 'Thecc.02G365600' => 'tca', 'Thecc.06G222300' => 'tca', 'Thecc.09G261800' => 'tca', 'Thecc.09G291400' => 'tca', 'Thhalv10003028m.g' => 'esa', 'Thhalv10007886m.g' => 'esa', 'Thhalv10016085m.g' => 'esa', 'Thhalv10016681m.g' => 'esa', 'Thhalv10020951m.g' => 'esa', 'TPR.G15598' => 'tpr', 'TPR.G29305' => 'tpr', 'TPR.G32395' => 'tpr', 'TPR.G36998' => 'tpr', 'TPR.G4227' => 'tpr', 'TWI18G1433' => 'twi', 'TWI31G0755' => 'twi', 'TWI38G0912' => 'twi', 'TWI75G1097' => 'twi', 'TWI75G1619' => 'twi', 'TWI79G1336' => 'twi', 'unitig_0.g943' => 'ugi', 'unitig_0.g944' => 'ugi', 'unitig_22.g6646' => 'ugi', 'unitig_37.g12681' => 'ugi', 'unitig_8.g3290' => 'ugi', 'vmacro03278' => 'vma', 'vmacro12197' => 'vma', 'vmacro14478' => 'vma', 'vmacro15787' => 'vma', 'vmacro15789' => 'vma', 'vmacro15790' => 'vma', 'vmacro15806' => 'vma', 'vmacro22907' => 'vma', 'vmacro22908' => 'vma', 'vmacro22909' => 'vma', 'vmacro23108' => 'vma', 'VMungo0540G0540' => 'vmu', 'VMungo0540G2468' => 'vmu', 'VMungo1080G0390' => 'vmu', 'VMungo1080G1165' => 'vmu', 'VMungo1127G0170' => 'vmu', 'VMungo1127G2099' => 'vmu', 'VMungo1215G3013' => 'vmu', 'Zm00001eb013110' => 'zma', 'Zm00001eb084260' => 'zma', 'Zm00001eb096110' => 'zma', 'Zm00001eb217510' => 'zma', 'Zm00001eb322550' => 'zma', 'Zm00001eb390770' => 'zma', 'Zm00001eb397170' => 'zma', 'Zm00001eb404610' => 'zma', 'Zm00001eb421790' => 'zma' ) $gf_id = 'HOM05D000911' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000911' ) $data_identifier = 'HOM05D000911' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 16, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 5, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 6, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 8, 'nnu' => (int) 16, 'oeu' => (int) 8, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 5, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 16, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421790' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000911', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27780' => 'bna', 'A03p35380' => 'bna', 'A04p21160' => 'bna', 'A05p40570' => 'bna', 'A06p26900' => 'bna', 'A08p33230' => 'bna', 'A09p65960' => 'bna', 'A10p18290' => 'bna', 'Aa31LG1G12990' => 'aar', 'Aa31LG1G2980' => 'aar', 'Aa31LG4G14320' => 'aar', 'Aa31LG7G11800' => 'aar', 'Aa31sc36G50' => 'aar', 'Aa31sc36G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3721' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5459' => 'aag', 'Actinidia03028' => 'ach', 'Actinidia03753' => 'ach', 'Actinidia04187' => 'ach', 'Actinidia05509' => 'ach', 'Actinidia24180' => 'ach', 'Actinidia26906' => 'ach', 'Actinidia37097' => 'ach', 'Actinidia38249' => 'ach', 'Ah.01g003470' => 'amhyb', 'Ah.01g004580' => 'amhyb', 'Ah.01g014850' => 'amhyb', 'Ah.01g016830' => 'amhyb', 'Ah.14g088000' => 'amhyb', 'AL1G22980' => 'aly', 'AL3G18990' => 'aly', 'AL4G22440' => 'aly', 'AL4G33180' => 'aly', 'AL5G22920' => 'aly', 'AL6G33660' => 'aly', 'AL8G20720' => 'aly', 'Aqoxy1G00935' => 'aox', 'Aqoxy1G02094' => 'aox', 'Aqoxy2G01239' => 'aox', 'Aqoxy4G01870' => 'aox', 'Aqoxy7G00450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.36ZVTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71EM27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5D6C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH3WRE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3NCM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RIM768' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YB5YRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z36GDV' => 'arhy', 'AT1G08250' => 'ath', 'AT1G11790' => 'ath', 'AT2G27820' => 'ath', 'AT3G07630' => 'ath', 'AT3G44720' => 'ath', 'AT5G22630' => 'ath', 'ATR0693G304' => 'atr', 'ATR0794G109' => 'atr', 'ATR0820G120' => 'atr', 'ATR1159G064' => 'atr', 'Atru.chr10.2239' => 'acertr', 'Atru.chr3.3371' => 'acertr', 'Atru.chr6.3202' => 'acertr', 'AUR62006499' => 'cqu', 'AUR62012718' => 'cqu', 'AUR62021938' => 'cqu', 'AUR62023932' => 'cqu', 'AUR62025034' => 'cqu', 'AUR62025035' => 'cqu', 'AUR62038307' => 'cqu', 'AUR62043466' => 'cqu', 'BcaB02g10748' => 'bca', 'BcaB03g13231' => 'bca', 'BcaB03g14689' => 'bca', 'BcaB05g22716' => 'bca', 'BcaB06g28172' => 'bca', 'BcaB08g36413' => 'bca', 'BcaC01g02186' => 'bca', 'BcaC01g04272' => 'bca', 'BcaC02g08080' => 'bca', 'BcaC02g08227' => 'bca', 'BcaC03g13901' => 'bca', 'BcaC04g19593' => 'bca', 'BcaC04g20874' => 'bca', 'BcaC05g29557' => 'bca', 'BcaC06g35505' => 'bca', 'BcaC07g41954' => 'bca', 'BcaC07g41955' => 'bca', 'BcaC07g41956' => 'bca', 'BcaC07g42519' => 'bca', 'BcaC07g42520' => 'bca', 'BcaC07g42523' => 'bca', 'BcaC07g42524' => 'bca', 'BcaC07g42525' => 'bca', 'BcaC08g47480' => 'bca', 'BcaC08g47481' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00530' => 'bna', 'BolC2t07178H' => 'bol', 'BolC3t16567H' => 'bol', 'BolC4t27234H' => 'bol', 'BolC5t29728H' => 'bol', 'BolC5t34622H' => 'bol', 'BolC6t40321H' => 'bol', 'BolC7t42028H' => 'bol', 'BolC8t49125H' => 'bol', 'BolC8t52538H' => 'bol', 'BolC8t52539H' => 'bol', 'BolC9t56681H' => 'bol', 'BolC9t58266H' => 'bol', 'BolSC21t60294H' => 'bol', 'BraA02t05670Z' => 'bra', 'BraA03t12716Z' => 'bra', 'BraA04t17685Z' => 'bra', 'BraA05t22788Z' => 'bra', 'BraA06t24032Z' => 'bra', 'BraA06t25625Z' => 'bra', 'BraA07t27930Z' => 'bra', 'BraA08t35242Z' => 'bra', 'BraA09t38609Z' => 'bra', 'BraA10t43905Z' => 'bra', 'C02p11060' => 'bna', 'C03p42990' => 'bna', 'C03p67310' => 'bna', 'C04p56990' => 'bna', 'C04p58660' => 'bna', 'C05p09890' => 'bna', 'C05p59680' => 'bna', 'C06p19830' => 'bna', 'C06p53040' => 'bna', 'C07p15230' => 'bna', 'C08p50070' => 'bna', 'C08p50090' => 'bna', 'C09p38330' => 'bna', 'C09p53940' => 'bna', 'CAN.G1014.1' => 'can', 'CAN.G644.30' => 'can', 'CAN.G84.47' => 'can', 'CAN.G919.8' => 'can', 'CANSAT54G0113' => 'cansat', 'CANSAT54G1286' => 'cansat', 'CANSAT64G1020' => 'cansat', 'CARHR008080' => 'chi', 'CARHR008090' => 'chi', 'CARHR012130' => 'chi', 'CARHR038390' => 'chi', 'CARHR082330' => 'chi', 'CARHR120520' => 'chi', 'CARHR151470' => 'chi', 'CARHR190950' => 'chi', 'Carub.0001s0760' => 'cru', 'Carub.0001s1146' => 'cru', 'Carub.0003s0721' => 'cru', 'Carub.0004s0858' => 'cru', 'Carub.0005s1040' => 'cru', 'Carub.0006s2035' => 'cru', 'Carub.0015s0005' => 'cru', 'Ca_01607_v3' => 'car', 'Ca_01677_v3' => 'car', 'Ca_06087_v3' => 'car', 'Ca_19238_v3' => 'car', 'Ca_19373_v3' => 'car', 'Ca_21079_v3' => 'car', 'CBR_g54016' => 'cbr', 'CBR_g54018' => 'cbr', 'CBR_g54020' => 'cbr', 'Cc01_g09780' => 'ccan', 'Cc01_g11680' => 'ccan', 'Cc02_g15610' => 'ccan', 'Cc05_g04350' => 'ccan', 'Cc09_g01580' => 'ccan', 'CDE01G0795' => 'cde', 'CDE02G2024' => 'cde', 'CDE02G2260' => 'cde', 'CDE02G4561' => 'cde', 'CDE05G2733' => 'cde', 'CDE05G3422' => 'cde', 'CDE06G2003' => 'cde', 'CDE08G0576' => 'cde', 'CDE09G0048' => 'cde', 'CDE11G0805' => 'cde', 'Cfa003644' => 'cfa', 'Cfa006290' => 'cfa', 'Cfa010080' => 'cfa', 'Cfa011376' => 'cfa', 'Cfa011576' => 'cfa', 'Cfa011577' => 'cfa', 'Cfa014389' => 'cfa', 'Ciclev10006044m.g' => 'ccl', 'Ciclev10006954m.g' => 'ccl', 'Ciclev10015131m.g' => 'ccl', 'Ciclev10015580m.g' => 'ccl', 'Ciclev10028359m.g' => 'ccl', 'Ciclev10028573m.g' => 'ccl', 'CiPaw.03G159300' => 'cil', 'CiPaw.04G115100' => 'cil', 'CiPaw.09G092800' => 'cil', 'CiPaw.10G071800' => 'cil', 'CiPaw.13G105800' => 'cil', 'CiPaw.13G141000' => 'cil', 'CiPaw.14G103400' => 'cil', 'ClCG01G012700' => 'cla', 'ClCG01G012720' => 'cla', 'ClCG01G021920' => 'cla', 'ClCG02G008870' => 'cla', 'ClCG02G020840' => 'cla', 'ClCG02G021930' => 'cla', 'COL.COLO4_19302' => 'col', 'COL.COLO4_25262' => 'col', 'COL.COLO4_31788' => 'col', 'Cpa.g.c34684' => 'cpa', 'Cpa.g.c36520.1' => 'cpa', 'Cpa.g.c45626' => 'cpa', 'Cpa.g.sc121.17' => 'cpa', 'Cpa.g.sc13.22' => 'cpa', 'Cpa.g.sc87.88' => 'cpa', 'Cre06.g261800' => 'cre', 'CsaV3_1G014500' => 'csa', 'CsaV3_1G014510' => 'csa', 'CsaV3_2G034880' => 'csa', 'CsaV3_6G014760' => 'csa', 'CsaV3_6G021500' => 'csa', 'CsaV3_6G048980' => 'csa', 'CSS0002511' => 'camsi', 'CSS0007556' => 'camsi', 'CSS0008532' => 'camsi', 'CSS0009709' => 'camsi', 'CSS0010486' => 'camsi', 'CSS0016768' => 'camsi', 'CSS0023512' => 'camsi', 'CSS0025341' => 'camsi', 'CSS0027999' => 'camsi', 'CSS0028944' => 'camsi', 'CSS0032292' => 'camsi', 'CSS0032464' => 'camsi', 'CSS0037153' => 'camsi', 'CSS0039256' => 'camsi', 'CSS0048392' => 'camsi', 'CSS0050458' => 'camsi', 'DCAR_004224' => 'dca', 'DCAR_006147' => 'dca', 'DCAR_006465' => 'dca', 'DCAR_008159' => 'dca', 'DCAR_012164' => 'dca', 'DCAR_019764' => 'dca', 'Dinv05418' => 'din', 'Dinv10839' => 'din', 'Dinv12521' => 'din', 'Dinv13900' => 'din', 'Dinv29426' => 'din', 'Duzib150G0263' => 'dzi', 'Duzib168G1178' => 'dzi', 'Duzib168G1924' => 'dzi', 'Duzib170G0299' => 'dzi', 'Duzib170G0813' => 'dzi', 'Duzib235G1128' => 'dzi', 'Duzib248G1060' => 'dzi', 'ECA232G1910' => 'eca', 'ECA233G4621' => 'eca', 'ECA238G1216' => 'eca', 'ECA238G1784' => 'eca', 'ECA248G1242' => 'eca', 'EL10Ac8g20071' => 'bvu', 'EL10Ac9g21086' => 'bvu', 'EL10Ac9g22407' => 'bvu', 'EL10Ac9g22412' => 'bvu', 'Eucgr.A01119' => 'egr', 'Eucgr.E04043' => 'egr', 'Eucgr.J00428' => 'egr', 'Eucgr.J00958' => 'egr', 'FAN11G3091' => 'fan', 'FAN11G3651' => 'fan', 'FAN16G2566' => 'fan', 'FAN21G3155' => 'fan', 'FAN21G3400' => 'fan', 'FAN21G3543' => 'fan', 'FAN25G0234' => 'fan', 'FAN25G1422' => 'fan', 'FAN25G3392' => 'fan', 'FvH4_3g01940' => 'fve', 'FvH4_3g29870' => 'fve', 'FvH4_3g33680' => 'fve', 'Glyma.09G004200' => 'gma', 'Glyma.11G151288' => 'gma', 'Glyma.11G189100' => 'gma', 'Glyma.12G072500' => 'gma', 'Glyma.12G085500' => 'gma', 'Glyma.12G181800' => 'gma', 'Glyma.12G193000' => 'gma', 'Glyma.13G309300' => 'gma', 'Glyma.13G319000' => 'gma', 'Glyma.17G012600' => 'gma', 'Gohir.A06G148600' => 'ghi', 'Gohir.A07G115800' => 'ghi', 'Gohir.A08G003600' => 'ghi', 'Gohir.A09G093300' => 'ghi', 'Gohir.A09G105400' => 'ghi', 'Gohir.A09G105500' => 'ghi', 'Gohir.D06G154600' => 'ghi', 'Gohir.D07G120200' => 'ghi', 'Gohir.D08G013900' => 'ghi', 'Gohir.D09G093100' => 'ghi', 'Gohir.D09G102200' => 'ghi', 'Gohir.D09G102300' => 'ghi', 'Gorai.001G129400' => 'gra', 'Gorai.004G008200' => 'gra', 'Gorai.006G109800' => 'gra', 'Gorai.006G119500' => 'gra', 'Gorai.006G121300' => 'gra', 'Gorai.010G180700' => 'gra', 'GSVIVG01012716001' => 'vvi', 'GSVIVG01025118001' => 'vvi', 'GSVIVG01030439001' => 'vvi', 'GSVIVG01031397001' => 'vvi', 'HanXRQChr01g0004201' => 'han', 'HanXRQChr02g0054941' => 'han', 'HanXRQChr05g0141811' => 'han', 'HanXRQChr07g0197751' => 'han', 'HanXRQChr11g0346691' => 'han', 'HanXRQChr13g0396971' => 'han', 'HanXRQChr14g0432951' => 'han', 'HanXRQChr14g0452001' => 'han', 'HanXRQChr15g0496681' => 'han', 'HanXRQChr17g0557491' => 'han', 'HanXRQChr17g0557501' => 'han', 'Haze_06809' => 'cav', 'Haze_12852' => 'cav', 'Haze_15850' => 'cav', 'Haze_23446' => 'cav', 'Haze_23942' => 'cav', 'Haze_23943' => 'cav', 'Hma1.2p1_0091F.1_g046450' => 'hma', 'Hma1.2p1_0128F.1_g059910' => 'hma', 'Hma1.2p1_0249F.1_g102260' => 'hma', 'Hma1.2p1_0453F.1_g156190' => 'hma', 'Hma1.2p1_0695F.1_g204380' => 'hma', 'Hma1.2p1_0749F.1_g212650' => 'hma', 'Hma1.2p1_2156F.1_g315420' => 'hma', 'Hma1.2p1_2686F.1_g326940' => 'hma', 'HPP92_006428' => 'vpl', 'HPP92_012069' => 'vpl', 'HPP92_014129' => 'vpl', 'HPP92_014133' => 'vpl', 'HPP92_017315' => 'vpl', 'HPP92_026445' => 'vpl', 'HPP92_026446' => 'vpl', 'Hund00774' => 'sun', 'Hund07682' => 'sun', 'Hund21413' => 'sun', 'Hund23462' => 'sun', 'Hund23463' => 'sun', 'Lalb_Chr03g0027911' => 'lal', 'Lalb_Chr13g0304271' => 'lal', 'Lalb_Chr19g0137471' => 'lal', 'Lalb_Chr22g0350651' => 'lal', 'Lalb_Chr24g0395151' => 'lal', 'Lj1A1231T40' => 'lonja', 'Lj1A221T48' => 'lonja', 'Lj1C924T12' => 'lonja', 'Lj2C993G6' => 'lonja', 'Lj3g0005790' => 'lja', 'Lj3g0015432' => 'lja', 'Lj3g0017722' => 'lja', 'Lj3g0018497' => 'lja', 'Lj4g0025071' => 'lja', 'Lsat_1_v5_gn_1_129680' => 'lsa', 'Lsat_1_v5_gn_2_25321' => 'lsa', 'Lsat_1_v5_gn_2_95461' => 'lsa', 'Lsat_1_v5_gn_4_159620' => 'lsa', 'Lsat_1_v5_gn_6_41301' => 'lsa', 'Lsat_1_v5_gn_6_74660' => 'lsa', 'Lsat_1_v5_gn_7_11520' => 'lsa', 'Lsat_1_v5_gn_9_67680' => 'lsa', 'Manes.04G008300' => 'mes', 'Manes.04G008400' => 'mes', 'Manes.04G026500' => 'mes', 'Manes.10G135300' => 'mes', 'Manes.11G157300' => 'mes', 'Manes.12G074000' => 'mes', 'Manes.16G006200' => 'mes', 'Manes.17G026400' => 'mes', 'Mapoly0024s0086' => 'mpo', 'Mapoly0024s0087' => 'mpo', 'Mapoly0071s0057' => 'mpo', 'Mapoly0204s0012' => 'mpo', 'MBI04_g37681_MAGBIO' => 'mbi', 'MBI05_g17779_MAGBIO' => 'mbi', 'MBI12_g31184_MAGBIO' => 'mbi', 'MBI17_g11083_MAGBIO' => 'mbi', 'MBI18_g03883_MAGBIO' => 'mbi', 'MBI18_g28940_MAGBIO' => 'mbi', 'MCO01G690' => 'mco', 'MD03G1109900' => 'mdo', 'MD03G1134800' => 'mdo', 'MD05G1348000' => 'mdo', 'MD10G1322400' => 'mdo', 'MD11G1123300' => 'mdo', 'MD11G1157600' => 'mdo', 'Medtr2g084875' => 'mtr', 'Medtr2g088130' => 'mtr', 'Medtr4g055310' => 'mtr', 'Medtr4g061070' => 'mtr', 'Medtr4g132250' => 'mtr', 'MELO3C004795.2' => 'cme', 'MELO3C004797.2' => 'cme', 'MELO3C007396.2' => 'cme', 'MELO3C019277.2' => 'cme', 'MELO3C021449.2' => 'cme', 'MELO3C025736.2' => 'cme', 'Migut.D02175' => 'egut', 'Migut.H01573' => 'egut', 'Migut.M01327' => 'egut', 'Migut.N02513' => 'egut', 'MSTRG.14638' => 'ama', 'MSTRG.18632' => 'ama', 'MSTRG.7203' => 'ama', 'Nitab4.5_0000533g0140' => 'nta', 'Nitab4.5_0000888g0150' => 'nta', 'Nitab4.5_0001453g0040' => 'nta', 'Nitab4.5_0002827g0090' => 'nta', 'Nitab4.5_0003082g0040' => 'nta', 'Nitab4.5_0007799g0040' => 'nta', 'Nitab4.5_0008983g0010' => 'nta', 'Nitab4.5_0009017g0020' => 'nta', 'Nn1g02132' => 'nnu', 'Nn1g03492' => 'nnu', 'Nn1g03493' => 'nnu', 'Nn1g03494' => 'nnu', 'Nn1g07164' => 'nnu', 'Nn1g07291' => 'nnu', 'Nn2g10655' => 'nnu', 'Nn2g11652' => 'nnu', 'Nn2g14008' => 'nnu', 'Nn3g17476' => 'nnu', 'Nn3g17477' => 'nnu', 'Nn4g22370' => 'nnu', 'Nn4g25255' => 'nnu', 'Nn5g27755' => 'nnu', 'Nn6g34260' => 'nnu', 'Nn6g35041' => 'nnu', 'Oeu005924.1' => 'oeu', 'Oeu008383.1' => 'oeu', 'Oeu014928.1' => 'oeu', 'Oeu019889.1' => 'oeu', 'Oeu022271.1' => 'oeu', 'Oeu025271.1' => 'oeu', 'Oeu036302.1' => 'oeu', 'Oeu044100.1' => 'oeu', 'Os01g0528300' => 'osa', 'Os03g0286200' => 'osa', 'Os04g0406600' => 'osa', 'Os07g0512000' => 'osa', 'Os07g0694600' => 'osa', 'Os08g0411000' => 'osa', 'Os09g0565700' => 'osa', 'Os09g0566050' => 'osa', 'Os10g0523700' => 'osa', 'Peaxi162Scf00002g00514' => 'pax', 'Peaxi162Scf00047g01817' => 'pax', 'Peaxi162Scf00114g00001' => 'pax', 'Peaxi162Scf00147g00613' => 'pax', 'Peaxi162Scf00389g00425' => 'pax', 'PGR042G1139' => 'pgr', 'PGR042G3273' => 'pgr', 'PGR102G2180' => 'pgr', 'PGR119G0234' => 'pgr', 'PGR119G0668' => 'pgr', 'PGSC0003DMG400007122' => 'stu', 'PGSC0003DMG400016478' => 'stu', 'PGSC0003DMG400025374' => 'stu', 'PGSC0003DMG400026536' => 'stu', 'Phvul.003G079600' => 'pvu', 'Phvul.005G115600' => 'pvu', 'Phvul.005G127100' => 'pvu', 'Phvul.006G149500' => 'pvu', 'Phvul.006G149600' => 'pvu', 'Phvul.011G071800' => 'pvu', 'Phvul.011G090400' => 'pvu', 'Potri.004G013400' => 'ptr', 'Potri.004G188100' => 'ptr', 'Potri.008G195500' => 'ptr', 'Potri.009G148800' => 'ptr', 'Potri.011G004700' => 'ptr', 'Pp3c17_22810' => 'ppa', 'Pp3c18_4480' => 'ppa', 'Pp3c19_13030' => 'ppa', 'Pp3c1_33620' => 'ppa', 'Pp3c2_9380' => 'ppa', 'PRCOL_00001023' => 'pco', 'Prupe.3G216300' => 'ppe', 'Prupe.4G019500' => 'ppe', 'Prupe.6G092500' => 'ppe', 'Prupe.6G119200' => 'ppe', 'Psat0s1945g0080' => 'psa', 'Psat0s4167g0040' => 'psa', 'Psat1g185800' => 'psa', 'Psat4g006440' => 'psa', 'Psat4g006480' => 'psa', 'Psat4g168120' => 'psa', 'Psat5g255680' => 'psa', 'Psat5g261760' => 'psa', 'Psat7g222120' => 'psa', 'PSO063G7252' => 'pso', 'PSO170G4778' => 'pso', 'PSO210G2249' => 'pso', 'PSO339G2411' => 'pso', 'PSO339G2457' => 'pso', 'PSO339G2854' => 'pso', 'PSO339G4288' => 'pso', 'PSO339G4615' => 'pso', 'PSO384G2796' => 'pso', 'PSO384G2940' => 'pso', 'PSO384G4227' => 'pso', 'PSO478G1425' => 'pso', 'PSO541G3863' => 'pso', 'PSO675G0507' => 'pso', 'PSO782G0338' => 'pso', 'PSO832G0644' => 'pso', 'QL01p013664' => 'qlo', 'QL01p036598' => 'qlo', 'QL05p072984' => 'qlo', 'QL08p005768' => 'qlo', 'QL08p032743' => 'qlo', 'QL93p0073_0439' => 'qlo', 'QL93p0073_0444' => 'qlo', 'RcHm_v2.0_Chr5g0002851' => 'rch', 'RcHm_v2.0_Chr5g0055201' => 'rch', 'RcHm_v2.0_Chr5g0061191' => 'rch', 'RcHm_v2.0_Chr7g0203231' => 'rch', 'Rhsim01G0208100' => 'rsi', 'Rhsim01G0208200' => 'rsi', 'Rhsim02G0106500' => 'rsi', 'Rhsim03G0107900' => 'rsi', 'Rhsim06G0163400' => 'rsi', 'Rhsim13G0105200' => 'rsi', 'Sabra04G0006300' => 'sbr', 'Sabra04G0127000' => 'sbr', 'Sabra08G0148700' => 'sbr', 'Sabra09G0117400' => 'sbr', 'SalBow1G3326' => 'sbo', 'SalBow3G3228' => 'sbo', 'SalBow6G1634' => 'sbo', 'SalBow6G3603' => 'sbo', 'SalBow6G5266' => 'sbo', 'SalBow7G2265' => 'sbo', 'SalBow8G0850' => 'sbo', 'SalBow8G2592' => 'sbo', 'Sc05g0009240' => 'sci', 'Sc12g0002300' => 'sci', 'Sc21g0000100' => 'sci', 'Sc21g0004720' => 'sci', 'Sed0002949' => 'sed', 'Sed0004114' => 'sed', 'Sed0004306' => 'sed', 'Sed0006172' => 'sed', 'Sed0008413' => 'sed', 'Sed0013809' => 'sed', 'Sed0019556' => 'sed', 'SEGI_03570' => 'sgi', 'SEGI_07859' => 'sgi', 'SEGI_15042' => 'sgi', 'SEGI_16263' => 'sgi', 'SEGI_16552' => 'sgi', 'SEGI_24331' => 'sgi', 'SEGI_27316' => 'sgi', 'SEGI_29521' => 'sgi', 'SEGI_41342' => 'sgi', 'SGA_v2.0_scaffold27G11617' => 'sas', 'SGA_v2.0_scaffold316G48428' => 'sas', 'SGA_v2.0_scaffold49G18261' => 'sas', 'SGA_v2.0_scaffold7G03831' => 'sas', 'SGA_v2.0_scaffold93G28359' => 'sas', 'SHI02210' => 'shi', 'SHI06028' => 'shi', 'SHI06321' => 'shi', 'SMO111G0012' => 'smo', 'SMO228G0080' => 'smo', 'SMO356G0756' => 'smo', 'Solyc02g080620.3' => 'sly', 'Solyc06g074530.1' => 'sly', 'Solyc11g066890.1' => 'sly', 'Solyc11g072520.3' => 'sly', 'Sopen02g025330' => 'spe', 'Sopen06g031000' => 'spe', 'Sopen09g008240' => 'spe', 'Sopen09g025210' => 'spe', 'Sopen11g026600' => 'spe', 'Sopen11g030170' => 'spe', 'Sp1g10420' => 'spa', 'Sp3g06570' => 'spa', 'Sp4g10660' => 'spa', 'Sp5g16460' => 'spa', 'Sp6g22710' => 'spa', 'TAR365G0112' => 'tar', 'TAR369G0717' => 'tar', 'TAR374G0976' => 'tar', 'TAR623G1128' => 'tar', 'TAR626G1937' => 'tar', 'TAR627G0123' => 'tar', 'TAR628G0305' => 'tar', 'TAR636G1176' => 'tar', 'TAR636G2442' => 'tar', 'THA.LOC104800556' => 'tha', 'THA.LOC104809501' => 'tha', 'THA.LOC104815126' => 'tha', 'THA.LOC104815732' => 'tha', 'THA.LOC104823528' => 'tha', 'Thecc.02G365600' => 'tca', 'Thecc.06G222300' => 'tca', 'Thecc.09G261800' => 'tca', 'Thecc.09G291400' => 'tca', 'Thhalv10003028m.g' => 'esa', 'Thhalv10007886m.g' => 'esa', 'Thhalv10016085m.g' => 'esa', 'Thhalv10016681m.g' => 'esa', 'Thhalv10020951m.g' => 'esa', 'TPR.G15598' => 'tpr', 'TPR.G29305' => 'tpr', 'TPR.G32395' => 'tpr', 'TPR.G36998' => 'tpr', 'TPR.G4227' => 'tpr', 'TWI18G1433' => 'twi', 'TWI31G0755' => 'twi', 'TWI38G0912' => 'twi', 'TWI75G1097' => 'twi', 'TWI75G1619' => 'twi', 'TWI79G1336' => 'twi', 'unitig_0.g943' => 'ugi', 'unitig_0.g944' => 'ugi', 'unitig_22.g6646' => 'ugi', 'unitig_37.g12681' => 'ugi', 'unitig_8.g3290' => 'ugi', 'vmacro03278' => 'vma', 'vmacro12197' => 'vma', 'vmacro14478' => 'vma', 'vmacro15787' => 'vma', 'vmacro15789' => 'vma', 'vmacro15790' => 'vma', 'vmacro15806' => 'vma', 'vmacro22907' => 'vma', 'vmacro22908' => 'vma', 'vmacro22909' => 'vma', 'vmacro23108' => 'vma', 'VMungo0540G0540' => 'vmu', 'VMungo0540G2468' => 'vmu', 'VMungo1080G0390' => 'vmu', 'VMungo1080G1165' => 'vmu', 'VMungo1127G0170' => 'vmu', 'VMungo1127G2099' => 'vmu', 'VMungo1215G3013' => 'vmu', 'Zm00001eb013110' => 'zma', 'Zm00001eb084260' => 'zma', 'Zm00001eb096110' => 'zma', 'Zm00001eb217510' => 'zma', 'Zm00001eb322550' => 'zma', 'Zm00001eb390770' => 'zma', 'Zm00001eb397170' => 'zma', 'Zm00001eb404610' => 'zma', 'Zm00001eb421790' => 'zma' ), 'gf_id' => 'HOM05D000911', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000911' ), 'data_identifier' => 'HOM05D000911', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000911', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27780' => 'bna', 'A03p35380' => 'bna', 'A04p21160' => 'bna', 'A05p40570' => 'bna', 'A06p26900' => 'bna', 'A08p33230' => 'bna', 'A09p65960' => 'bna', 'A10p18290' => 'bna', 'Aa31LG1G12990' => 'aar', 'Aa31LG1G2980' => 'aar', 'Aa31LG4G14320' => 'aar', 'Aa31LG7G11800' => 'aar', 'Aa31sc36G50' => 'aar', 'Aa31sc36G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3721' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5459' => 'aag', 'Actinidia03028' => 'ach', 'Actinidia03753' => 'ach', 'Actinidia04187' => 'ach', 'Actinidia05509' => 'ach', 'Actinidia24180' => 'ach', 'Actinidia26906' => 'ach', 'Actinidia37097' => 'ach', 'Actinidia38249' => 'ach', 'Ah.01g003470' => 'amhyb', 'Ah.01g004580' => 'amhyb', 'Ah.01g014850' => 'amhyb', 'Ah.01g016830' => 'amhyb', 'Ah.14g088000' => 'amhyb', 'AL1G22980' => 'aly', 'AL3G18990' => 'aly', 'AL4G22440' => 'aly', 'AL4G33180' => 'aly', 'AL5G22920' => 'aly', 'AL6G33660' => 'aly', 'AL8G20720' => 'aly', 'Aqoxy1G00935' => 'aox', 'Aqoxy1G02094' => 'aox', 'Aqoxy2G01239' => 'aox', 'Aqoxy4G01870' => 'aox', 'Aqoxy7G00450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.36ZVTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71EM27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5D6C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH3WRE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3NCM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RIM768' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YB5YRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z36GDV' => 'arhy', 'AT1G08250' => 'ath', 'AT1G11790' => 'ath', 'AT2G27820' => 'ath', 'AT3G07630' => 'ath', 'AT3G44720' => 'ath', 'AT5G22630' => 'ath', 'ATR0693G304' => 'atr', 'ATR0794G109' => 'atr', 'ATR0820G120' => 'atr', 'ATR1159G064' => 'atr', 'Atru.chr10.2239' => 'acertr', 'Atru.chr3.3371' => 'acertr', 'Atru.chr6.3202' => 'acertr', 'AUR62006499' => 'cqu', 'AUR62012718' => 'cqu', 'AUR62021938' => 'cqu', 'AUR62023932' => 'cqu', 'AUR62025034' => 'cqu', 'AUR62025035' => 'cqu', 'AUR62038307' => 'cqu', 'AUR62043466' => 'cqu', 'BcaB02g10748' => 'bca', 'BcaB03g13231' => 'bca', 'BcaB03g14689' => 'bca', 'BcaB05g22716' => 'bca', 'BcaB06g28172' => 'bca', 'BcaB08g36413' => 'bca', 'BcaC01g02186' => 'bca', 'BcaC01g04272' => 'bca', 'BcaC02g08080' => 'bca', 'BcaC02g08227' => 'bca', 'BcaC03g13901' => 'bca', 'BcaC04g19593' => 'bca', 'BcaC04g20874' => 'bca', 'BcaC05g29557' => 'bca', 'BcaC06g35505' => 'bca', 'BcaC07g41954' => 'bca', 'BcaC07g41955' => 'bca', 'BcaC07g41956' => 'bca', 'BcaC07g42519' => 'bca', 'BcaC07g42520' => 'bca', 'BcaC07g42523' => 'bca', 'BcaC07g42524' => 'bca', 'BcaC07g42525' => 'bca', 'BcaC08g47480' => 'bca', 'BcaC08g47481' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00530' => 'bna', 'BolC2t07178H' => 'bol', 'BolC3t16567H' => 'bol', 'BolC4t27234H' => 'bol', 'BolC5t29728H' => 'bol', 'BolC5t34622H' => 'bol', 'BolC6t40321H' => 'bol', 'BolC7t42028H' => 'bol', 'BolC8t49125H' => 'bol', 'BolC8t52538H' => 'bol', 'BolC8t52539H' => 'bol', 'BolC9t56681H' => 'bol', 'BolC9t58266H' => 'bol', 'BolSC21t60294H' => 'bol', 'BraA02t05670Z' => 'bra', 'BraA03t12716Z' => 'bra', 'BraA04t17685Z' => 'bra', 'BraA05t22788Z' => 'bra', 'BraA06t24032Z' => 'bra', 'BraA06t25625Z' => 'bra', 'BraA07t27930Z' => 'bra', 'BraA08t35242Z' => 'bra', 'BraA09t38609Z' => 'bra', 'BraA10t43905Z' => 'bra', 'C02p11060' => 'bna', 'C03p42990' => 'bna', 'C03p67310' => 'bna', 'C04p56990' => 'bna', 'C04p58660' => 'bna', 'C05p09890' => 'bna', 'C05p59680' => 'bna', 'C06p19830' => 'bna', 'C06p53040' => 'bna', 'C07p15230' => 'bna', 'C08p50070' => 'bna', 'C08p50090' => 'bna', 'C09p38330' => 'bna', 'C09p53940' => 'bna', 'CAN.G1014.1' => 'can', 'CAN.G644.30' => 'can', 'CAN.G84.47' => 'can', 'CAN.G919.8' => 'can', 'CANSAT54G0113' => 'cansat', 'CANSAT54G1286' => 'cansat', 'CANSAT64G1020' => 'cansat', 'CARHR008080' => 'chi', 'CARHR008090' => 'chi', 'CARHR012130' => 'chi', 'CARHR038390' => 'chi', 'CARHR082330' => 'chi', 'CARHR120520' => 'chi', 'CARHR151470' => 'chi', 'CARHR190950' => 'chi', 'Carub.0001s0760' => 'cru', 'Carub.0001s1146' => 'cru', 'Carub.0003s0721' => 'cru', 'Carub.0004s0858' => 'cru', 'Carub.0005s1040' => 'cru', 'Carub.0006s2035' => 'cru', 'Carub.0015s0005' => 'cru', 'Ca_01607_v3' => 'car', 'Ca_01677_v3' => 'car', 'Ca_06087_v3' => 'car', 'Ca_19238_v3' => 'car', 'Ca_19373_v3' => 'car', 'Ca_21079_v3' => 'car', 'CBR_g54016' => 'cbr', 'CBR_g54018' => 'cbr', 'CBR_g54020' => 'cbr', 'Cc01_g09780' => 'ccan', 'Cc01_g11680' => 'ccan', 'Cc02_g15610' => 'ccan', 'Cc05_g04350' => 'ccan', 'Cc09_g01580' => 'ccan', 'CDE01G0795' => 'cde', 'CDE02G2024' => 'cde', 'CDE02G2260' => 'cde', 'CDE02G4561' => 'cde', 'CDE05G2733' => 'cde', 'CDE05G3422' => 'cde', 'CDE06G2003' => 'cde', 'CDE08G0576' => 'cde', 'CDE09G0048' => 'cde', 'CDE11G0805' => 'cde', 'Cfa003644' => 'cfa', 'Cfa006290' => 'cfa', 'Cfa010080' => 'cfa', 'Cfa011376' => 'cfa', 'Cfa011576' => 'cfa', 'Cfa011577' => 'cfa', 'Cfa014389' => 'cfa', 'Ciclev10006044m.g' => 'ccl', 'Ciclev10006954m.g' => 'ccl', 'Ciclev10015131m.g' => 'ccl', 'Ciclev10015580m.g' => 'ccl', 'Ciclev10028359m.g' => 'ccl', 'Ciclev10028573m.g' => 'ccl', 'CiPaw.03G159300' => 'cil', 'CiPaw.04G115100' => 'cil', 'CiPaw.09G092800' => 'cil', 'CiPaw.10G071800' => 'cil', 'CiPaw.13G105800' => 'cil', 'CiPaw.13G141000' => 'cil', 'CiPaw.14G103400' => 'cil', 'ClCG01G012700' => 'cla', 'ClCG01G012720' => 'cla', 'ClCG01G021920' => 'cla', 'ClCG02G008870' => 'cla', 'ClCG02G020840' => 'cla', 'ClCG02G021930' => 'cla', 'COL.COLO4_19302' => 'col', 'COL.COLO4_25262' => 'col', 'COL.COLO4_31788' => 'col', 'Cpa.g.c34684' => 'cpa', 'Cpa.g.c36520.1' => 'cpa', 'Cpa.g.c45626' => 'cpa', 'Cpa.g.sc121.17' => 'cpa', 'Cpa.g.sc13.22' => 'cpa', 'Cpa.g.sc87.88' => 'cpa', 'Cre06.g261800' => 'cre', 'CsaV3_1G014500' => 'csa', 'CsaV3_1G014510' => 'csa', 'CsaV3_2G034880' => 'csa', 'CsaV3_6G014760' => 'csa', 'CsaV3_6G021500' => 'csa', 'CsaV3_6G048980' => 'csa', 'CSS0002511' => 'camsi', 'CSS0007556' => 'camsi', 'CSS0008532' => 'camsi', 'CSS0009709' => 'camsi', 'CSS0010486' => 'camsi', 'CSS0016768' => 'camsi', 'CSS0023512' => 'camsi', 'CSS0025341' => 'camsi', 'CSS0027999' => 'camsi', 'CSS0028944' => 'camsi', 'CSS0032292' => 'camsi', 'CSS0032464' => 'camsi', 'CSS0037153' => 'camsi', 'CSS0039256' => 'camsi', 'CSS0048392' => 'camsi', 'CSS0050458' => 'camsi', 'DCAR_004224' => 'dca', 'DCAR_006147' => 'dca', 'DCAR_006465' => 'dca', 'DCAR_008159' => 'dca', 'DCAR_012164' => 'dca', 'DCAR_019764' => 'dca', 'Dinv05418' => 'din', 'Dinv10839' => 'din', 'Dinv12521' => 'din', 'Dinv13900' => 'din', 'Dinv29426' => 'din', 'Duzib150G0263' => 'dzi', 'Duzib168G1178' => 'dzi', 'Duzib168G1924' => 'dzi', 'Duzib170G0299' => 'dzi', 'Duzib170G0813' => 'dzi', 'Duzib235G1128' => 'dzi', 'Duzib248G1060' => 'dzi', 'ECA232G1910' => 'eca', 'ECA233G4621' => 'eca', 'ECA238G1216' => 'eca', 'ECA238G1784' => 'eca', 'ECA248G1242' => 'eca', 'EL10Ac8g20071' => 'bvu', 'EL10Ac9g21086' => 'bvu', 'EL10Ac9g22407' => 'bvu', 'EL10Ac9g22412' => 'bvu', 'Eucgr.A01119' => 'egr', 'Eucgr.E04043' => 'egr', 'Eucgr.J00428' => 'egr', 'Eucgr.J00958' => 'egr', 'FAN11G3091' => 'fan', 'FAN11G3651' => 'fan', 'FAN16G2566' => 'fan', 'FAN21G3155' => 'fan', 'FAN21G3400' => 'fan', 'FAN21G3543' => 'fan', 'FAN25G0234' => 'fan', 'FAN25G1422' => 'fan', 'FAN25G3392' => 'fan', 'FvH4_3g01940' => 'fve', 'FvH4_3g29870' => 'fve', 'FvH4_3g33680' => 'fve', 'Glyma.09G004200' => 'gma', 'Glyma.11G151288' => 'gma', 'Glyma.11G189100' => 'gma', 'Glyma.12G072500' => 'gma', 'Glyma.12G085500' => 'gma', 'Glyma.12G181800' => 'gma', 'Glyma.12G193000' => 'gma', 'Glyma.13G309300' => 'gma', 'Glyma.13G319000' => 'gma', 'Glyma.17G012600' => 'gma', 'Gohir.A06G148600' => 'ghi', 'Gohir.A07G115800' => 'ghi', 'Gohir.A08G003600' => 'ghi', 'Gohir.A09G093300' => 'ghi', 'Gohir.A09G105400' => 'ghi', 'Gohir.A09G105500' => 'ghi', 'Gohir.D06G154600' => 'ghi', 'Gohir.D07G120200' => 'ghi', 'Gohir.D08G013900' => 'ghi', 'Gohir.D09G093100' => 'ghi', 'Gohir.D09G102200' => 'ghi', 'Gohir.D09G102300' => 'ghi', 'Gorai.001G129400' => 'gra', 'Gorai.004G008200' => 'gra', 'Gorai.006G109800' => 'gra', 'Gorai.006G119500' => 'gra', 'Gorai.006G121300' => 'gra', 'Gorai.010G180700' => 'gra', 'GSVIVG01012716001' => 'vvi', 'GSVIVG01025118001' => 'vvi', 'GSVIVG01030439001' => 'vvi', 'GSVIVG01031397001' => 'vvi', 'HanXRQChr01g0004201' => 'han', 'HanXRQChr02g0054941' => 'han', 'HanXRQChr05g0141811' => 'han', 'HanXRQChr07g0197751' => 'han', 'HanXRQChr11g0346691' => 'han', 'HanXRQChr13g0396971' => 'han', 'HanXRQChr14g0432951' => 'han', 'HanXRQChr14g0452001' => 'han', 'HanXRQChr15g0496681' => 'han', 'HanXRQChr17g0557491' => 'han', 'HanXRQChr17g0557501' => 'han', 'Haze_06809' => 'cav', 'Haze_12852' => 'cav', 'Haze_15850' => 'cav', 'Haze_23446' => 'cav', 'Haze_23942' => 'cav', 'Haze_23943' => 'cav', 'Hma1.2p1_0091F.1_g046450' => 'hma', 'Hma1.2p1_0128F.1_g059910' => 'hma', 'Hma1.2p1_0249F.1_g102260' => 'hma', 'Hma1.2p1_0453F.1_g156190' => 'hma', 'Hma1.2p1_0695F.1_g204380' => 'hma', 'Hma1.2p1_0749F.1_g212650' => 'hma', 'Hma1.2p1_2156F.1_g315420' => 'hma', 'Hma1.2p1_2686F.1_g326940' => 'hma', 'HPP92_006428' => 'vpl', 'HPP92_012069' => 'vpl', 'HPP92_014129' => 'vpl', 'HPP92_014133' => 'vpl', 'HPP92_017315' => 'vpl', 'HPP92_026445' => 'vpl', 'HPP92_026446' => 'vpl', 'Hund00774' => 'sun', 'Hund07682' => 'sun', 'Hund21413' => 'sun', 'Hund23462' => 'sun', 'Hund23463' => 'sun', 'Lalb_Chr03g0027911' => 'lal', 'Lalb_Chr13g0304271' => 'lal', 'Lalb_Chr19g0137471' => 'lal', 'Lalb_Chr22g0350651' => 'lal', 'Lalb_Chr24g0395151' => 'lal', 'Lj1A1231T40' => 'lonja', 'Lj1A221T48' => 'lonja', 'Lj1C924T12' => 'lonja', 'Lj2C993G6' => 'lonja', 'Lj3g0005790' => 'lja', 'Lj3g0015432' => 'lja', 'Lj3g0017722' => 'lja', 'Lj3g0018497' => 'lja', 'Lj4g0025071' => 'lja', 'Lsat_1_v5_gn_1_129680' => 'lsa', 'Lsat_1_v5_gn_2_25321' => 'lsa', 'Lsat_1_v5_gn_2_95461' => 'lsa', 'Lsat_1_v5_gn_4_159620' => 'lsa', 'Lsat_1_v5_gn_6_41301' => 'lsa', 'Lsat_1_v5_gn_6_74660' => 'lsa', 'Lsat_1_v5_gn_7_11520' => 'lsa', 'Lsat_1_v5_gn_9_67680' => 'lsa', 'Manes.04G008300' => 'mes', 'Manes.04G008400' => 'mes', 'Manes.04G026500' => 'mes', 'Manes.10G135300' => 'mes', 'Manes.11G157300' => 'mes', 'Manes.12G074000' => 'mes', 'Manes.16G006200' => 'mes', 'Manes.17G026400' => 'mes', 'Mapoly0024s0086' => 'mpo', 'Mapoly0024s0087' => 'mpo', 'Mapoly0071s0057' => 'mpo', 'Mapoly0204s0012' => 'mpo', 'MBI04_g37681_MAGBIO' => 'mbi', 'MBI05_g17779_MAGBIO' => 'mbi', 'MBI12_g31184_MAGBIO' => 'mbi', 'MBI17_g11083_MAGBIO' => 'mbi', 'MBI18_g03883_MAGBIO' => 'mbi', 'MBI18_g28940_MAGBIO' => 'mbi', 'MCO01G690' => 'mco', 'MD03G1109900' => 'mdo', 'MD03G1134800' => 'mdo', 'MD05G1348000' => 'mdo', 'MD10G1322400' => 'mdo', 'MD11G1123300' => 'mdo', 'MD11G1157600' => 'mdo', 'Medtr2g084875' => 'mtr', 'Medtr2g088130' => 'mtr', 'Medtr4g055310' => 'mtr', 'Medtr4g061070' => 'mtr', 'Medtr4g132250' => 'mtr', 'MELO3C004795.2' => 'cme', 'MELO3C004797.2' => 'cme', 'MELO3C007396.2' => 'cme', 'MELO3C019277.2' => 'cme', 'MELO3C021449.2' => 'cme', 'MELO3C025736.2' => 'cme', 'Migut.D02175' => 'egut', 'Migut.H01573' => 'egut', 'Migut.M01327' => 'egut', 'Migut.N02513' => 'egut', 'MSTRG.14638' => 'ama', 'MSTRG.18632' => 'ama', 'MSTRG.7203' => 'ama', 'Nitab4.5_0000533g0140' => 'nta', 'Nitab4.5_0000888g0150' => 'nta', 'Nitab4.5_0001453g0040' => 'nta', 'Nitab4.5_0002827g0090' => 'nta', 'Nitab4.5_0003082g0040' => 'nta', 'Nitab4.5_0007799g0040' => 'nta', 'Nitab4.5_0008983g0010' => 'nta', 'Nitab4.5_0009017g0020' => 'nta', 'Nn1g02132' => 'nnu', 'Nn1g03492' => 'nnu', 'Nn1g03493' => 'nnu', 'Nn1g03494' => 'nnu', 'Nn1g07164' => 'nnu', 'Nn1g07291' => 'nnu', 'Nn2g10655' => 'nnu', 'Nn2g11652' => 'nnu', 'Nn2g14008' => 'nnu', 'Nn3g17476' => 'nnu', 'Nn3g17477' => 'nnu', 'Nn4g22370' => 'nnu', 'Nn4g25255' => 'nnu', 'Nn5g27755' => 'nnu', 'Nn6g34260' => 'nnu', 'Nn6g35041' => 'nnu', 'Oeu005924.1' => 'oeu', 'Oeu008383.1' => 'oeu', 'Oeu014928.1' => 'oeu', 'Oeu019889.1' => 'oeu', 'Oeu022271.1' => 'oeu', 'Oeu025271.1' => 'oeu', 'Oeu036302.1' => 'oeu', 'Oeu044100.1' => 'oeu', 'Os01g0528300' => 'osa', 'Os03g0286200' => 'osa', 'Os04g0406600' => 'osa', 'Os07g0512000' => 'osa', 'Os07g0694600' => 'osa', 'Os08g0411000' => 'osa', 'Os09g0565700' => 'osa', 'Os09g0566050' => 'osa', 'Os10g0523700' => 'osa', 'Peaxi162Scf00002g00514' => 'pax', 'Peaxi162Scf00047g01817' => 'pax', 'Peaxi162Scf00114g00001' => 'pax', 'Peaxi162Scf00147g00613' => 'pax', 'Peaxi162Scf00389g00425' => 'pax', 'PGR042G1139' => 'pgr', 'PGR042G3273' => 'pgr', 'PGR102G2180' => 'pgr', 'PGR119G0234' => 'pgr', 'PGR119G0668' => 'pgr', 'PGSC0003DMG400007122' => 'stu', 'PGSC0003DMG400016478' => 'stu', 'PGSC0003DMG400025374' => 'stu', 'PGSC0003DMG400026536' => 'stu', 'Phvul.003G079600' => 'pvu', 'Phvul.005G115600' => 'pvu', 'Phvul.005G127100' => 'pvu', 'Phvul.006G149500' => 'pvu', 'Phvul.006G149600' => 'pvu', 'Phvul.011G071800' => 'pvu', 'Phvul.011G090400' => 'pvu', 'Potri.004G013400' => 'ptr', 'Potri.004G188100' => 'ptr', 'Potri.008G195500' => 'ptr', 'Potri.009G148800' => 'ptr', 'Potri.011G004700' => 'ptr', 'Pp3c17_22810' => 'ppa', 'Pp3c18_4480' => 'ppa', 'Pp3c19_13030' => 'ppa', 'Pp3c1_33620' => 'ppa', 'Pp3c2_9380' => 'ppa', 'PRCOL_00001023' => 'pco', 'Prupe.3G216300' => 'ppe', 'Prupe.4G019500' => 'ppe', 'Prupe.6G092500' => 'ppe', 'Prupe.6G119200' => 'ppe', 'Psat0s1945g0080' => 'psa', 'Psat0s4167g0040' => 'psa', 'Psat1g185800' => 'psa', 'Psat4g006440' => 'psa', 'Psat4g006480' => 'psa', 'Psat4g168120' => 'psa', 'Psat5g255680' => 'psa', 'Psat5g261760' => 'psa', 'Psat7g222120' => 'psa', 'PSO063G7252' => 'pso', 'PSO170G4778' => 'pso', 'PSO210G2249' => 'pso', 'PSO339G2411' => 'pso', 'PSO339G2457' => 'pso', 'PSO339G2854' => 'pso', 'PSO339G4288' => 'pso', 'PSO339G4615' => 'pso', 'PSO384G2796' => 'pso', 'PSO384G2940' => 'pso', 'PSO384G4227' => 'pso', 'PSO478G1425' => 'pso', 'PSO541G3863' => 'pso', 'PSO675G0507' => 'pso', 'PSO782G0338' => 'pso', 'PSO832G0644' => 'pso', 'QL01p013664' => 'qlo', 'QL01p036598' => 'qlo', 'QL05p072984' => 'qlo', 'QL08p005768' => 'qlo', 'QL08p032743' => 'qlo', 'QL93p0073_0439' => 'qlo', 'QL93p0073_0444' => 'qlo', 'RcHm_v2.0_Chr5g0002851' => 'rch', 'RcHm_v2.0_Chr5g0055201' => 'rch', 'RcHm_v2.0_Chr5g0061191' => 'rch', 'RcHm_v2.0_Chr7g0203231' => 'rch', 'Rhsim01G0208100' => 'rsi', 'Rhsim01G0208200' => 'rsi', 'Rhsim02G0106500' => 'rsi', 'Rhsim03G0107900' => 'rsi', 'Rhsim06G0163400' => 'rsi', 'Rhsim13G0105200' => 'rsi', 'Sabra04G0006300' => 'sbr', 'Sabra04G0127000' => 'sbr', 'Sabra08G0148700' => 'sbr', 'Sabra09G0117400' => 'sbr', 'SalBow1G3326' => 'sbo', 'SalBow3G3228' => 'sbo', 'SalBow6G1634' => 'sbo', 'SalBow6G3603' => 'sbo', 'SalBow6G5266' => 'sbo', 'SalBow7G2265' => 'sbo', 'SalBow8G0850' => 'sbo', 'SalBow8G2592' => 'sbo', 'Sc05g0009240' => 'sci', 'Sc12g0002300' => 'sci', 'Sc21g0000100' => 'sci', 'Sc21g0004720' => 'sci', 'Sed0002949' => 'sed', 'Sed0004114' => 'sed', 'Sed0004306' => 'sed', 'Sed0006172' => 'sed', 'Sed0008413' => 'sed', 'Sed0013809' => 'sed', 'Sed0019556' => 'sed', 'SEGI_03570' => 'sgi', 'SEGI_07859' => 'sgi', 'SEGI_15042' => 'sgi', 'SEGI_16263' => 'sgi', 'SEGI_16552' => 'sgi', 'SEGI_24331' => 'sgi', 'SEGI_27316' => 'sgi', 'SEGI_29521' => 'sgi', 'SEGI_41342' => 'sgi', 'SGA_v2.0_scaffold27G11617' => 'sas', 'SGA_v2.0_scaffold316G48428' => 'sas', 'SGA_v2.0_scaffold49G18261' => 'sas', 'SGA_v2.0_scaffold7G03831' => 'sas', 'SGA_v2.0_scaffold93G28359' => 'sas', 'SHI02210' => 'shi', 'SHI06028' => 'shi', 'SHI06321' => 'shi', 'SMO111G0012' => 'smo', 'SMO228G0080' => 'smo', 'SMO356G0756' => 'smo', 'Solyc02g080620.3' => 'sly', 'Solyc06g074530.1' => 'sly', 'Solyc11g066890.1' => 'sly', 'Solyc11g072520.3' => 'sly', 'Sopen02g025330' => 'spe', 'Sopen06g031000' => 'spe', 'Sopen09g008240' => 'spe', 'Sopen09g025210' => 'spe', 'Sopen11g026600' => 'spe', 'Sopen11g030170' => 'spe', 'Sp1g10420' => 'spa', 'Sp3g06570' => 'spa', 'Sp4g10660' => 'spa', 'Sp5g16460' => 'spa', 'Sp6g22710' => 'spa', 'TAR365G0112' => 'tar', 'TAR369G0717' => 'tar', 'TAR374G0976' => 'tar', 'TAR623G1128' => 'tar', 'TAR626G1937' => 'tar', 'TAR627G0123' => 'tar', 'TAR628G0305' => 'tar', 'TAR636G1176' => 'tar', 'TAR636G2442' => 'tar', 'THA.LOC104800556' => 'tha', 'THA.LOC104809501' => 'tha', 'THA.LOC104815126' => 'tha', 'THA.LOC104815732' => 'tha', 'THA.LOC104823528' => 'tha', 'Thecc.02G365600' => 'tca', 'Thecc.06G222300' => 'tca', 'Thecc.09G261800' => 'tca', 'Thecc.09G291400' => 'tca', 'Thhalv10003028m.g' => 'esa', 'Thhalv10007886m.g' => 'esa', 'Thhalv10016085m.g' => 'esa', 'Thhalv10016681m.g' => 'esa', 'Thhalv10020951m.g' => 'esa', 'TPR.G15598' => 'tpr', 'TPR.G29305' => 'tpr', 'TPR.G32395' => 'tpr', 'TPR.G36998' => 'tpr', 'TPR.G4227' => 'tpr', 'TWI18G1433' => 'twi', 'TWI31G0755' => 'twi', 'TWI38G0912' => 'twi', 'TWI75G1097' => 'twi', 'TWI75G1619' => 'twi', 'TWI79G1336' => 'twi', 'unitig_0.g943' => 'ugi', 'unitig_0.g944' => 'ugi', 'unitig_22.g6646' => 'ugi', 'unitig_37.g12681' => 'ugi', 'unitig_8.g3290' => 'ugi', 'vmacro03278' => 'vma', 'vmacro12197' => 'vma', 'vmacro14478' => 'vma', 'vmacro15787' => 'vma', 'vmacro15789' => 'vma', 'vmacro15790' => 'vma', 'vmacro15806' => 'vma', 'vmacro22907' => 'vma', 'vmacro22908' => 'vma', 'vmacro22909' => 'vma', 'vmacro23108' => 'vma', 'VMungo0540G0540' => 'vmu', 'VMungo0540G2468' => 'vmu', 'VMungo1080G0390' => 'vmu', 'VMungo1080G1165' => 'vmu', 'VMungo1127G0170' => 'vmu', 'VMungo1127G2099' => 'vmu', 'VMungo1215G3013' => 'vmu', 'Zm00001eb013110' => 'zma', 'Zm00001eb084260' => 'zma', 'Zm00001eb096110' => 'zma', 'Zm00001eb217510' => 'zma', 'Zm00001eb322550' => 'zma', 'Zm00001eb390770' => 'zma', 'Zm00001eb397170' => 'zma', 'Zm00001eb404610' => 'zma', 'Zm00001eb421790' => 'zma' ) $gf_id = 'HOM05D000911' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000911' ) $data_identifier = 'HOM05D000911' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 16, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 5, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 6, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 8, 'nnu' => (int) 16, 'oeu' => (int) 8, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 5, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 16, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421790' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000911', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27780' => 'bna', 'A03p35380' => 'bna', 'A04p21160' => 'bna', 'A05p40570' => 'bna', 'A06p26900' => 'bna', 'A08p33230' => 'bna', 'A09p65960' => 'bna', 'A10p18290' => 'bna', 'Aa31LG1G12990' => 'aar', 'Aa31LG1G2980' => 'aar', 'Aa31LG4G14320' => 'aar', 'Aa31LG7G11800' => 'aar', 'Aa31sc36G50' => 'aar', 'Aa31sc36G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3721' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5459' => 'aag', 'Actinidia03028' => 'ach', 'Actinidia03753' => 'ach', 'Actinidia04187' => 'ach', 'Actinidia05509' => 'ach', 'Actinidia24180' => 'ach', 'Actinidia26906' => 'ach', 'Actinidia37097' => 'ach', 'Actinidia38249' => 'ach', 'Ah.01g003470' => 'amhyb', 'Ah.01g004580' => 'amhyb', 'Ah.01g014850' => 'amhyb', 'Ah.01g016830' => 'amhyb', 'Ah.14g088000' => 'amhyb', 'AL1G22980' => 'aly', 'AL3G18990' => 'aly', 'AL4G22440' => 'aly', 'AL4G33180' => 'aly', 'AL5G22920' => 'aly', 'AL6G33660' => 'aly', 'AL8G20720' => 'aly', 'Aqoxy1G00935' => 'aox', 'Aqoxy1G02094' => 'aox', 'Aqoxy2G01239' => 'aox', 'Aqoxy4G01870' => 'aox', 'Aqoxy7G00450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.36ZVTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71EM27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5D6C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH3WRE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3NCM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RIM768' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YB5YRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z36GDV' => 'arhy', 'AT1G08250' => 'ath', 'AT1G11790' => 'ath', 'AT2G27820' => 'ath', 'AT3G07630' => 'ath', 'AT3G44720' => 'ath', 'AT5G22630' => 'ath', 'ATR0693G304' => 'atr', 'ATR0794G109' => 'atr', 'ATR0820G120' => 'atr', 'ATR1159G064' => 'atr', 'Atru.chr10.2239' => 'acertr', 'Atru.chr3.3371' => 'acertr', 'Atru.chr6.3202' => 'acertr', 'AUR62006499' => 'cqu', 'AUR62012718' => 'cqu', 'AUR62021938' => 'cqu', 'AUR62023932' => 'cqu', 'AUR62025034' => 'cqu', 'AUR62025035' => 'cqu', 'AUR62038307' => 'cqu', 'AUR62043466' => 'cqu', 'BcaB02g10748' => 'bca', 'BcaB03g13231' => 'bca', 'BcaB03g14689' => 'bca', 'BcaB05g22716' => 'bca', 'BcaB06g28172' => 'bca', 'BcaB08g36413' => 'bca', 'BcaC01g02186' => 'bca', 'BcaC01g04272' => 'bca', 'BcaC02g08080' => 'bca', 'BcaC02g08227' => 'bca', 'BcaC03g13901' => 'bca', 'BcaC04g19593' => 'bca', 'BcaC04g20874' => 'bca', 'BcaC05g29557' => 'bca', 'BcaC06g35505' => 'bca', 'BcaC07g41954' => 'bca', 'BcaC07g41955' => 'bca', 'BcaC07g41956' => 'bca', 'BcaC07g42519' => 'bca', 'BcaC07g42520' => 'bca', 'BcaC07g42523' => 'bca', 'BcaC07g42524' => 'bca', 'BcaC07g42525' => 'bca', 'BcaC08g47480' => 'bca', 'BcaC08g47481' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00530' => 'bna', 'BolC2t07178H' => 'bol', 'BolC3t16567H' => 'bol', 'BolC4t27234H' => 'bol', 'BolC5t29728H' => 'bol', 'BolC5t34622H' => 'bol', 'BolC6t40321H' => 'bol', 'BolC7t42028H' => 'bol', 'BolC8t49125H' => 'bol', 'BolC8t52538H' => 'bol', 'BolC8t52539H' => 'bol', 'BolC9t56681H' => 'bol', 'BolC9t58266H' => 'bol', 'BolSC21t60294H' => 'bol', 'BraA02t05670Z' => 'bra', 'BraA03t12716Z' => 'bra', 'BraA04t17685Z' => 'bra', 'BraA05t22788Z' => 'bra', 'BraA06t24032Z' => 'bra', 'BraA06t25625Z' => 'bra', 'BraA07t27930Z' => 'bra', 'BraA08t35242Z' => 'bra', 'BraA09t38609Z' => 'bra', 'BraA10t43905Z' => 'bra', 'C02p11060' => 'bna', 'C03p42990' => 'bna', 'C03p67310' => 'bna', 'C04p56990' => 'bna', 'C04p58660' => 'bna', 'C05p09890' => 'bna', 'C05p59680' => 'bna', 'C06p19830' => 'bna', 'C06p53040' => 'bna', 'C07p15230' => 'bna', 'C08p50070' => 'bna', 'C08p50090' => 'bna', 'C09p38330' => 'bna', 'C09p53940' => 'bna', 'CAN.G1014.1' => 'can', 'CAN.G644.30' => 'can', 'CAN.G84.47' => 'can', 'CAN.G919.8' => 'can', 'CANSAT54G0113' => 'cansat', 'CANSAT54G1286' => 'cansat', 'CANSAT64G1020' => 'cansat', 'CARHR008080' => 'chi', 'CARHR008090' => 'chi', 'CARHR012130' => 'chi', 'CARHR038390' => 'chi', 'CARHR082330' => 'chi', 'CARHR120520' => 'chi', 'CARHR151470' => 'chi', 'CARHR190950' => 'chi', 'Carub.0001s0760' => 'cru', 'Carub.0001s1146' => 'cru', 'Carub.0003s0721' => 'cru', 'Carub.0004s0858' => 'cru', 'Carub.0005s1040' => 'cru', 'Carub.0006s2035' => 'cru', 'Carub.0015s0005' => 'cru', 'Ca_01607_v3' => 'car', 'Ca_01677_v3' => 'car', 'Ca_06087_v3' => 'car', 'Ca_19238_v3' => 'car', 'Ca_19373_v3' => 'car', 'Ca_21079_v3' => 'car', 'CBR_g54016' => 'cbr', 'CBR_g54018' => 'cbr', 'CBR_g54020' => 'cbr', 'Cc01_g09780' => 'ccan', 'Cc01_g11680' => 'ccan', 'Cc02_g15610' => 'ccan', 'Cc05_g04350' => 'ccan', 'Cc09_g01580' => 'ccan', 'CDE01G0795' => 'cde', 'CDE02G2024' => 'cde', 'CDE02G2260' => 'cde', 'CDE02G4561' => 'cde', 'CDE05G2733' => 'cde', 'CDE05G3422' => 'cde', 'CDE06G2003' => 'cde', 'CDE08G0576' => 'cde', 'CDE09G0048' => 'cde', 'CDE11G0805' => 'cde', 'Cfa003644' => 'cfa', 'Cfa006290' => 'cfa', 'Cfa010080' => 'cfa', 'Cfa011376' => 'cfa', 'Cfa011576' => 'cfa', 'Cfa011577' => 'cfa', 'Cfa014389' => 'cfa', 'Ciclev10006044m.g' => 'ccl', 'Ciclev10006954m.g' => 'ccl', 'Ciclev10015131m.g' => 'ccl', 'Ciclev10015580m.g' => 'ccl', 'Ciclev10028359m.g' => 'ccl', 'Ciclev10028573m.g' => 'ccl', 'CiPaw.03G159300' => 'cil', 'CiPaw.04G115100' => 'cil', 'CiPaw.09G092800' => 'cil', 'CiPaw.10G071800' => 'cil', 'CiPaw.13G105800' => 'cil', 'CiPaw.13G141000' => 'cil', 'CiPaw.14G103400' => 'cil', 'ClCG01G012700' => 'cla', 'ClCG01G012720' => 'cla', 'ClCG01G021920' => 'cla', 'ClCG02G008870' => 'cla', 'ClCG02G020840' => 'cla', 'ClCG02G021930' => 'cla', 'COL.COLO4_19302' => 'col', 'COL.COLO4_25262' => 'col', 'COL.COLO4_31788' => 'col', 'Cpa.g.c34684' => 'cpa', 'Cpa.g.c36520.1' => 'cpa', 'Cpa.g.c45626' => 'cpa', 'Cpa.g.sc121.17' => 'cpa', 'Cpa.g.sc13.22' => 'cpa', 'Cpa.g.sc87.88' => 'cpa', 'Cre06.g261800' => 'cre', 'CsaV3_1G014500' => 'csa', 'CsaV3_1G014510' => 'csa', 'CsaV3_2G034880' => 'csa', 'CsaV3_6G014760' => 'csa', 'CsaV3_6G021500' => 'csa', 'CsaV3_6G048980' => 'csa', 'CSS0002511' => 'camsi', 'CSS0007556' => 'camsi', 'CSS0008532' => 'camsi', 'CSS0009709' => 'camsi', 'CSS0010486' => 'camsi', 'CSS0016768' => 'camsi', 'CSS0023512' => 'camsi', 'CSS0025341' => 'camsi', 'CSS0027999' => 'camsi', 'CSS0028944' => 'camsi', 'CSS0032292' => 'camsi', 'CSS0032464' => 'camsi', 'CSS0037153' => 'camsi', 'CSS0039256' => 'camsi', 'CSS0048392' => 'camsi', 'CSS0050458' => 'camsi', 'DCAR_004224' => 'dca', 'DCAR_006147' => 'dca', 'DCAR_006465' => 'dca', 'DCAR_008159' => 'dca', 'DCAR_012164' => 'dca', 'DCAR_019764' => 'dca', 'Dinv05418' => 'din', 'Dinv10839' => 'din', 'Dinv12521' => 'din', 'Dinv13900' => 'din', 'Dinv29426' => 'din', 'Duzib150G0263' => 'dzi', 'Duzib168G1178' => 'dzi', 'Duzib168G1924' => 'dzi', 'Duzib170G0299' => 'dzi', 'Duzib170G0813' => 'dzi', 'Duzib235G1128' => 'dzi', 'Duzib248G1060' => 'dzi', 'ECA232G1910' => 'eca', 'ECA233G4621' => 'eca', 'ECA238G1216' => 'eca', 'ECA238G1784' => 'eca', 'ECA248G1242' => 'eca', 'EL10Ac8g20071' => 'bvu', 'EL10Ac9g21086' => 'bvu', 'EL10Ac9g22407' => 'bvu', 'EL10Ac9g22412' => 'bvu', 'Eucgr.A01119' => 'egr', 'Eucgr.E04043' => 'egr', 'Eucgr.J00428' => 'egr', 'Eucgr.J00958' => 'egr', 'FAN11G3091' => 'fan', 'FAN11G3651' => 'fan', 'FAN16G2566' => 'fan', 'FAN21G3155' => 'fan', 'FAN21G3400' => 'fan', 'FAN21G3543' => 'fan', 'FAN25G0234' => 'fan', 'FAN25G1422' => 'fan', 'FAN25G3392' => 'fan', 'FvH4_3g01940' => 'fve', 'FvH4_3g29870' => 'fve', 'FvH4_3g33680' => 'fve', 'Glyma.09G004200' => 'gma', 'Glyma.11G151288' => 'gma', 'Glyma.11G189100' => 'gma', 'Glyma.12G072500' => 'gma', 'Glyma.12G085500' => 'gma', 'Glyma.12G181800' => 'gma', 'Glyma.12G193000' => 'gma', 'Glyma.13G309300' => 'gma', 'Glyma.13G319000' => 'gma', 'Glyma.17G012600' => 'gma', 'Gohir.A06G148600' => 'ghi', 'Gohir.A07G115800' => 'ghi', 'Gohir.A08G003600' => 'ghi', 'Gohir.A09G093300' => 'ghi', 'Gohir.A09G105400' => 'ghi', 'Gohir.A09G105500' => 'ghi', 'Gohir.D06G154600' => 'ghi', 'Gohir.D07G120200' => 'ghi', 'Gohir.D08G013900' => 'ghi', 'Gohir.D09G093100' => 'ghi', 'Gohir.D09G102200' => 'ghi', 'Gohir.D09G102300' => 'ghi', 'Gorai.001G129400' => 'gra', 'Gorai.004G008200' => 'gra', 'Gorai.006G109800' => 'gra', 'Gorai.006G119500' => 'gra', 'Gorai.006G121300' => 'gra', 'Gorai.010G180700' => 'gra', 'GSVIVG01012716001' => 'vvi', 'GSVIVG01025118001' => 'vvi', 'GSVIVG01030439001' => 'vvi', 'GSVIVG01031397001' => 'vvi', 'HanXRQChr01g0004201' => 'han', 'HanXRQChr02g0054941' => 'han', 'HanXRQChr05g0141811' => 'han', 'HanXRQChr07g0197751' => 'han', 'HanXRQChr11g0346691' => 'han', 'HanXRQChr13g0396971' => 'han', 'HanXRQChr14g0432951' => 'han', 'HanXRQChr14g0452001' => 'han', 'HanXRQChr15g0496681' => 'han', 'HanXRQChr17g0557491' => 'han', 'HanXRQChr17g0557501' => 'han', 'Haze_06809' => 'cav', 'Haze_12852' => 'cav', 'Haze_15850' => 'cav', 'Haze_23446' => 'cav', 'Haze_23942' => 'cav', 'Haze_23943' => 'cav', 'Hma1.2p1_0091F.1_g046450' => 'hma', 'Hma1.2p1_0128F.1_g059910' => 'hma', 'Hma1.2p1_0249F.1_g102260' => 'hma', 'Hma1.2p1_0453F.1_g156190' => 'hma', 'Hma1.2p1_0695F.1_g204380' => 'hma', 'Hma1.2p1_0749F.1_g212650' => 'hma', 'Hma1.2p1_2156F.1_g315420' => 'hma', 'Hma1.2p1_2686F.1_g326940' => 'hma', 'HPP92_006428' => 'vpl', 'HPP92_012069' => 'vpl', 'HPP92_014129' => 'vpl', 'HPP92_014133' => 'vpl', 'HPP92_017315' => 'vpl', 'HPP92_026445' => 'vpl', 'HPP92_026446' => 'vpl', 'Hund00774' => 'sun', 'Hund07682' => 'sun', 'Hund21413' => 'sun', 'Hund23462' => 'sun', 'Hund23463' => 'sun', 'Lalb_Chr03g0027911' => 'lal', 'Lalb_Chr13g0304271' => 'lal', 'Lalb_Chr19g0137471' => 'lal', 'Lalb_Chr22g0350651' => 'lal', 'Lalb_Chr24g0395151' => 'lal', 'Lj1A1231T40' => 'lonja', 'Lj1A221T48' => 'lonja', 'Lj1C924T12' => 'lonja', 'Lj2C993G6' => 'lonja', 'Lj3g0005790' => 'lja', 'Lj3g0015432' => 'lja', 'Lj3g0017722' => 'lja', 'Lj3g0018497' => 'lja', 'Lj4g0025071' => 'lja', 'Lsat_1_v5_gn_1_129680' => 'lsa', 'Lsat_1_v5_gn_2_25321' => 'lsa', 'Lsat_1_v5_gn_2_95461' => 'lsa', 'Lsat_1_v5_gn_4_159620' => 'lsa', 'Lsat_1_v5_gn_6_41301' => 'lsa', 'Lsat_1_v5_gn_6_74660' => 'lsa', 'Lsat_1_v5_gn_7_11520' => 'lsa', 'Lsat_1_v5_gn_9_67680' => 'lsa', 'Manes.04G008300' => 'mes', 'Manes.04G008400' => 'mes', 'Manes.04G026500' => 'mes', 'Manes.10G135300' => 'mes', 'Manes.11G157300' => 'mes', 'Manes.12G074000' => 'mes', 'Manes.16G006200' => 'mes', 'Manes.17G026400' => 'mes', 'Mapoly0024s0086' => 'mpo', 'Mapoly0024s0087' => 'mpo', 'Mapoly0071s0057' => 'mpo', 'Mapoly0204s0012' => 'mpo', 'MBI04_g37681_MAGBIO' => 'mbi', 'MBI05_g17779_MAGBIO' => 'mbi', 'MBI12_g31184_MAGBIO' => 'mbi', 'MBI17_g11083_MAGBIO' => 'mbi', 'MBI18_g03883_MAGBIO' => 'mbi', 'MBI18_g28940_MAGBIO' => 'mbi', 'MCO01G690' => 'mco', 'MD03G1109900' => 'mdo', 'MD03G1134800' => 'mdo', 'MD05G1348000' => 'mdo', 'MD10G1322400' => 'mdo', 'MD11G1123300' => 'mdo', 'MD11G1157600' => 'mdo', 'Medtr2g084875' => 'mtr', 'Medtr2g088130' => 'mtr', 'Medtr4g055310' => 'mtr', 'Medtr4g061070' => 'mtr', 'Medtr4g132250' => 'mtr', 'MELO3C004795.2' => 'cme', 'MELO3C004797.2' => 'cme', 'MELO3C007396.2' => 'cme', 'MELO3C019277.2' => 'cme', 'MELO3C021449.2' => 'cme', 'MELO3C025736.2' => 'cme', 'Migut.D02175' => 'egut', 'Migut.H01573' => 'egut', 'Migut.M01327' => 'egut', 'Migut.N02513' => 'egut', 'MSTRG.14638' => 'ama', 'MSTRG.18632' => 'ama', 'MSTRG.7203' => 'ama', 'Nitab4.5_0000533g0140' => 'nta', 'Nitab4.5_0000888g0150' => 'nta', 'Nitab4.5_0001453g0040' => 'nta', 'Nitab4.5_0002827g0090' => 'nta', 'Nitab4.5_0003082g0040' => 'nta', 'Nitab4.5_0007799g0040' => 'nta', 'Nitab4.5_0008983g0010' => 'nta', 'Nitab4.5_0009017g0020' => 'nta', 'Nn1g02132' => 'nnu', 'Nn1g03492' => 'nnu', 'Nn1g03493' => 'nnu', 'Nn1g03494' => 'nnu', 'Nn1g07164' => 'nnu', 'Nn1g07291' => 'nnu', 'Nn2g10655' => 'nnu', 'Nn2g11652' => 'nnu', 'Nn2g14008' => 'nnu', 'Nn3g17476' => 'nnu', 'Nn3g17477' => 'nnu', 'Nn4g22370' => 'nnu', 'Nn4g25255' => 'nnu', 'Nn5g27755' => 'nnu', 'Nn6g34260' => 'nnu', 'Nn6g35041' => 'nnu', 'Oeu005924.1' => 'oeu', 'Oeu008383.1' => 'oeu', 'Oeu014928.1' => 'oeu', 'Oeu019889.1' => 'oeu', 'Oeu022271.1' => 'oeu', 'Oeu025271.1' => 'oeu', 'Oeu036302.1' => 'oeu', 'Oeu044100.1' => 'oeu', 'Os01g0528300' => 'osa', 'Os03g0286200' => 'osa', 'Os04g0406600' => 'osa', 'Os07g0512000' => 'osa', 'Os07g0694600' => 'osa', 'Os08g0411000' => 'osa', 'Os09g0565700' => 'osa', 'Os09g0566050' => 'osa', 'Os10g0523700' => 'osa', 'Peaxi162Scf00002g00514' => 'pax', 'Peaxi162Scf00047g01817' => 'pax', 'Peaxi162Scf00114g00001' => 'pax', 'Peaxi162Scf00147g00613' => 'pax', 'Peaxi162Scf00389g00425' => 'pax', 'PGR042G1139' => 'pgr', 'PGR042G3273' => 'pgr', 'PGR102G2180' => 'pgr', 'PGR119G0234' => 'pgr', 'PGR119G0668' => 'pgr', 'PGSC0003DMG400007122' => 'stu', 'PGSC0003DMG400016478' => 'stu', 'PGSC0003DMG400025374' => 'stu', 'PGSC0003DMG400026536' => 'stu', 'Phvul.003G079600' => 'pvu', 'Phvul.005G115600' => 'pvu', 'Phvul.005G127100' => 'pvu', 'Phvul.006G149500' => 'pvu', 'Phvul.006G149600' => 'pvu', 'Phvul.011G071800' => 'pvu', 'Phvul.011G090400' => 'pvu', 'Potri.004G013400' => 'ptr', 'Potri.004G188100' => 'ptr', 'Potri.008G195500' => 'ptr', 'Potri.009G148800' => 'ptr', 'Potri.011G004700' => 'ptr', 'Pp3c17_22810' => 'ppa', 'Pp3c18_4480' => 'ppa', 'Pp3c19_13030' => 'ppa', 'Pp3c1_33620' => 'ppa', 'Pp3c2_9380' => 'ppa', 'PRCOL_00001023' => 'pco', 'Prupe.3G216300' => 'ppe', 'Prupe.4G019500' => 'ppe', 'Prupe.6G092500' => 'ppe', 'Prupe.6G119200' => 'ppe', 'Psat0s1945g0080' => 'psa', 'Psat0s4167g0040' => 'psa', 'Psat1g185800' => 'psa', 'Psat4g006440' => 'psa', 'Psat4g006480' => 'psa', 'Psat4g168120' => 'psa', 'Psat5g255680' => 'psa', 'Psat5g261760' => 'psa', 'Psat7g222120' => 'psa', 'PSO063G7252' => 'pso', 'PSO170G4778' => 'pso', 'PSO210G2249' => 'pso', 'PSO339G2411' => 'pso', 'PSO339G2457' => 'pso', 'PSO339G2854' => 'pso', 'PSO339G4288' => 'pso', 'PSO339G4615' => 'pso', 'PSO384G2796' => 'pso', 'PSO384G2940' => 'pso', 'PSO384G4227' => 'pso', 'PSO478G1425' => 'pso', 'PSO541G3863' => 'pso', 'PSO675G0507' => 'pso', 'PSO782G0338' => 'pso', 'PSO832G0644' => 'pso', 'QL01p013664' => 'qlo', 'QL01p036598' => 'qlo', 'QL05p072984' => 'qlo', 'QL08p005768' => 'qlo', 'QL08p032743' => 'qlo', 'QL93p0073_0439' => 'qlo', 'QL93p0073_0444' => 'qlo', 'RcHm_v2.0_Chr5g0002851' => 'rch', 'RcHm_v2.0_Chr5g0055201' => 'rch', 'RcHm_v2.0_Chr5g0061191' => 'rch', 'RcHm_v2.0_Chr7g0203231' => 'rch', 'Rhsim01G0208100' => 'rsi', 'Rhsim01G0208200' => 'rsi', 'Rhsim02G0106500' => 'rsi', 'Rhsim03G0107900' => 'rsi', 'Rhsim06G0163400' => 'rsi', 'Rhsim13G0105200' => 'rsi', 'Sabra04G0006300' => 'sbr', 'Sabra04G0127000' => 'sbr', 'Sabra08G0148700' => 'sbr', 'Sabra09G0117400' => 'sbr', 'SalBow1G3326' => 'sbo', 'SalBow3G3228' => 'sbo', 'SalBow6G1634' => 'sbo', 'SalBow6G3603' => 'sbo', 'SalBow6G5266' => 'sbo', 'SalBow7G2265' => 'sbo', 'SalBow8G0850' => 'sbo', 'SalBow8G2592' => 'sbo', 'Sc05g0009240' => 'sci', 'Sc12g0002300' => 'sci', 'Sc21g0000100' => 'sci', 'Sc21g0004720' => 'sci', 'Sed0002949' => 'sed', 'Sed0004114' => 'sed', 'Sed0004306' => 'sed', 'Sed0006172' => 'sed', 'Sed0008413' => 'sed', 'Sed0013809' => 'sed', 'Sed0019556' => 'sed', 'SEGI_03570' => 'sgi', 'SEGI_07859' => 'sgi', 'SEGI_15042' => 'sgi', 'SEGI_16263' => 'sgi', 'SEGI_16552' => 'sgi', 'SEGI_24331' => 'sgi', 'SEGI_27316' => 'sgi', 'SEGI_29521' => 'sgi', 'SEGI_41342' => 'sgi', 'SGA_v2.0_scaffold27G11617' => 'sas', 'SGA_v2.0_scaffold316G48428' => 'sas', 'SGA_v2.0_scaffold49G18261' => 'sas', 'SGA_v2.0_scaffold7G03831' => 'sas', 'SGA_v2.0_scaffold93G28359' => 'sas', 'SHI02210' => 'shi', 'SHI06028' => 'shi', 'SHI06321' => 'shi', 'SMO111G0012' => 'smo', 'SMO228G0080' => 'smo', 'SMO356G0756' => 'smo', 'Solyc02g080620.3' => 'sly', 'Solyc06g074530.1' => 'sly', 'Solyc11g066890.1' => 'sly', 'Solyc11g072520.3' => 'sly', 'Sopen02g025330' => 'spe', 'Sopen06g031000' => 'spe', 'Sopen09g008240' => 'spe', 'Sopen09g025210' => 'spe', 'Sopen11g026600' => 'spe', 'Sopen11g030170' => 'spe', 'Sp1g10420' => 'spa', 'Sp3g06570' => 'spa', 'Sp4g10660' => 'spa', 'Sp5g16460' => 'spa', 'Sp6g22710' => 'spa', 'TAR365G0112' => 'tar', 'TAR369G0717' => 'tar', 'TAR374G0976' => 'tar', 'TAR623G1128' => 'tar', 'TAR626G1937' => 'tar', 'TAR627G0123' => 'tar', 'TAR628G0305' => 'tar', 'TAR636G1176' => 'tar', 'TAR636G2442' => 'tar', 'THA.LOC104800556' => 'tha', 'THA.LOC104809501' => 'tha', 'THA.LOC104815126' => 'tha', 'THA.LOC104815732' => 'tha', 'THA.LOC104823528' => 'tha', 'Thecc.02G365600' => 'tca', 'Thecc.06G222300' => 'tca', 'Thecc.09G261800' => 'tca', 'Thecc.09G291400' => 'tca', 'Thhalv10003028m.g' => 'esa', 'Thhalv10007886m.g' => 'esa', 'Thhalv10016085m.g' => 'esa', 'Thhalv10016681m.g' => 'esa', 'Thhalv10020951m.g' => 'esa', 'TPR.G15598' => 'tpr', 'TPR.G29305' => 'tpr', 'TPR.G32395' => 'tpr', 'TPR.G36998' => 'tpr', 'TPR.G4227' => 'tpr', 'TWI18G1433' => 'twi', 'TWI31G0755' => 'twi', 'TWI38G0912' => 'twi', 'TWI75G1097' => 'twi', 'TWI75G1619' => 'twi', 'TWI79G1336' => 'twi', 'unitig_0.g943' => 'ugi', 'unitig_0.g944' => 'ugi', 'unitig_22.g6646' => 'ugi', 'unitig_37.g12681' => 'ugi', 'unitig_8.g3290' => 'ugi', 'vmacro03278' => 'vma', 'vmacro12197' => 'vma', 'vmacro14478' => 'vma', 'vmacro15787' => 'vma', 'vmacro15789' => 'vma', 'vmacro15790' => 'vma', 'vmacro15806' => 'vma', 'vmacro22907' => 'vma', 'vmacro22908' => 'vma', 'vmacro22909' => 'vma', 'vmacro23108' => 'vma', 'VMungo0540G0540' => 'vmu', 'VMungo0540G2468' => 'vmu', 'VMungo1080G0390' => 'vmu', 'VMungo1080G1165' => 'vmu', 'VMungo1127G0170' => 'vmu', 'VMungo1127G2099' => 'vmu', 'VMungo1215G3013' => 'vmu', 'Zm00001eb013110' => 'zma', 'Zm00001eb084260' => 'zma', 'Zm00001eb096110' => 'zma', 'Zm00001eb217510' => 'zma', 'Zm00001eb322550' => 'zma', 'Zm00001eb390770' => 'zma', 'Zm00001eb397170' => 'zma', 'Zm00001eb404610' => 'zma', 'Zm00001eb421790' => 'zma' ), 'gf_id' => 'HOM05D000911', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000911' ), 'data_identifier' => 'HOM05D000911', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000911', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27780' => 'bna', 'A03p35380' => 'bna', 'A04p21160' => 'bna', 'A05p40570' => 'bna', 'A06p26900' => 'bna', 'A08p33230' => 'bna', 'A09p65960' => 'bna', 'A10p18290' => 'bna', 'Aa31LG1G12990' => 'aar', 'Aa31LG1G2980' => 'aar', 'Aa31LG4G14320' => 'aar', 'Aa31LG7G11800' => 'aar', 'Aa31sc36G50' => 'aar', 'Aa31sc36G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3721' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5459' => 'aag', 'Actinidia03028' => 'ach', 'Actinidia03753' => 'ach', 'Actinidia04187' => 'ach', 'Actinidia05509' => 'ach', 'Actinidia24180' => 'ach', 'Actinidia26906' => 'ach', 'Actinidia37097' => 'ach', 'Actinidia38249' => 'ach', 'Ah.01g003470' => 'amhyb', 'Ah.01g004580' => 'amhyb', 'Ah.01g014850' => 'amhyb', 'Ah.01g016830' => 'amhyb', 'Ah.14g088000' => 'amhyb', 'AL1G22980' => 'aly', 'AL3G18990' => 'aly', 'AL4G22440' => 'aly', 'AL4G33180' => 'aly', 'AL5G22920' => 'aly', 'AL6G33660' => 'aly', 'AL8G20720' => 'aly', 'Aqoxy1G00935' => 'aox', 'Aqoxy1G02094' => 'aox', 'Aqoxy2G01239' => 'aox', 'Aqoxy4G01870' => 'aox', 'Aqoxy7G00450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.36ZVTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71EM27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5D6C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH3WRE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3NCM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RIM768' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YB5YRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z36GDV' => 'arhy', 'AT1G08250' => 'ath', 'AT1G11790' => 'ath', 'AT2G27820' => 'ath', 'AT3G07630' => 'ath', 'AT3G44720' => 'ath', 'AT5G22630' => 'ath', 'ATR0693G304' => 'atr', 'ATR0794G109' => 'atr', 'ATR0820G120' => 'atr', 'ATR1159G064' => 'atr', 'Atru.chr10.2239' => 'acertr', 'Atru.chr3.3371' => 'acertr', 'Atru.chr6.3202' => 'acertr', 'AUR62006499' => 'cqu', 'AUR62012718' => 'cqu', 'AUR62021938' => 'cqu', 'AUR62023932' => 'cqu', 'AUR62025034' => 'cqu', 'AUR62025035' => 'cqu', 'AUR62038307' => 'cqu', 'AUR62043466' => 'cqu', 'BcaB02g10748' => 'bca', 'BcaB03g13231' => 'bca', 'BcaB03g14689' => 'bca', 'BcaB05g22716' => 'bca', 'BcaB06g28172' => 'bca', 'BcaB08g36413' => 'bca', 'BcaC01g02186' => 'bca', 'BcaC01g04272' => 'bca', 'BcaC02g08080' => 'bca', 'BcaC02g08227' => 'bca', 'BcaC03g13901' => 'bca', 'BcaC04g19593' => 'bca', 'BcaC04g20874' => 'bca', 'BcaC05g29557' => 'bca', 'BcaC06g35505' => 'bca', 'BcaC07g41954' => 'bca', 'BcaC07g41955' => 'bca', 'BcaC07g41956' => 'bca', 'BcaC07g42519' => 'bca', 'BcaC07g42520' => 'bca', 'BcaC07g42523' => 'bca', 'BcaC07g42524' => 'bca', 'BcaC07g42525' => 'bca', 'BcaC08g47480' => 'bca', 'BcaC08g47481' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00530' => 'bna', 'BolC2t07178H' => 'bol', 'BolC3t16567H' => 'bol', 'BolC4t27234H' => 'bol', 'BolC5t29728H' => 'bol', 'BolC5t34622H' => 'bol', 'BolC6t40321H' => 'bol', 'BolC7t42028H' => 'bol', 'BolC8t49125H' => 'bol', 'BolC8t52538H' => 'bol', 'BolC8t52539H' => 'bol', 'BolC9t56681H' => 'bol', 'BolC9t58266H' => 'bol', 'BolSC21t60294H' => 'bol', 'BraA02t05670Z' => 'bra', 'BraA03t12716Z' => 'bra', 'BraA04t17685Z' => 'bra', 'BraA05t22788Z' => 'bra', 'BraA06t24032Z' => 'bra', 'BraA06t25625Z' => 'bra', 'BraA07t27930Z' => 'bra', 'BraA08t35242Z' => 'bra', 'BraA09t38609Z' => 'bra', 'BraA10t43905Z' => 'bra', 'C02p11060' => 'bna', 'C03p42990' => 'bna', 'C03p67310' => 'bna', 'C04p56990' => 'bna', 'C04p58660' => 'bna', 'C05p09890' => 'bna', 'C05p59680' => 'bna', 'C06p19830' => 'bna', 'C06p53040' => 'bna', 'C07p15230' => 'bna', 'C08p50070' => 'bna', 'C08p50090' => 'bna', 'C09p38330' => 'bna', 'C09p53940' => 'bna', 'CAN.G1014.1' => 'can', 'CAN.G644.30' => 'can', 'CAN.G84.47' => 'can', 'CAN.G919.8' => 'can', 'CANSAT54G0113' => 'cansat', 'CANSAT54G1286' => 'cansat', 'CANSAT64G1020' => 'cansat', 'CARHR008080' => 'chi', 'CARHR008090' => 'chi', 'CARHR012130' => 'chi', 'CARHR038390' => 'chi', 'CARHR082330' => 'chi', 'CARHR120520' => 'chi', 'CARHR151470' => 'chi', 'CARHR190950' => 'chi', 'Carub.0001s0760' => 'cru', 'Carub.0001s1146' => 'cru', 'Carub.0003s0721' => 'cru', 'Carub.0004s0858' => 'cru', 'Carub.0005s1040' => 'cru', 'Carub.0006s2035' => 'cru', 'Carub.0015s0005' => 'cru', 'Ca_01607_v3' => 'car', 'Ca_01677_v3' => 'car', 'Ca_06087_v3' => 'car', 'Ca_19238_v3' => 'car', 'Ca_19373_v3' => 'car', 'Ca_21079_v3' => 'car', 'CBR_g54016' => 'cbr', 'CBR_g54018' => 'cbr', 'CBR_g54020' => 'cbr', 'Cc01_g09780' => 'ccan', 'Cc01_g11680' => 'ccan', 'Cc02_g15610' => 'ccan', 'Cc05_g04350' => 'ccan', 'Cc09_g01580' => 'ccan', 'CDE01G0795' => 'cde', 'CDE02G2024' => 'cde', 'CDE02G2260' => 'cde', 'CDE02G4561' => 'cde', 'CDE05G2733' => 'cde', 'CDE05G3422' => 'cde', 'CDE06G2003' => 'cde', 'CDE08G0576' => 'cde', 'CDE09G0048' => 'cde', 'CDE11G0805' => 'cde', 'Cfa003644' => 'cfa', 'Cfa006290' => 'cfa', 'Cfa010080' => 'cfa', 'Cfa011376' => 'cfa', 'Cfa011576' => 'cfa', 'Cfa011577' => 'cfa', 'Cfa014389' => 'cfa', 'Ciclev10006044m.g' => 'ccl', 'Ciclev10006954m.g' => 'ccl', 'Ciclev10015131m.g' => 'ccl', 'Ciclev10015580m.g' => 'ccl', 'Ciclev10028359m.g' => 'ccl', 'Ciclev10028573m.g' => 'ccl', 'CiPaw.03G159300' => 'cil', 'CiPaw.04G115100' => 'cil', 'CiPaw.09G092800' => 'cil', 'CiPaw.10G071800' => 'cil', 'CiPaw.13G105800' => 'cil', 'CiPaw.13G141000' => 'cil', 'CiPaw.14G103400' => 'cil', 'ClCG01G012700' => 'cla', 'ClCG01G012720' => 'cla', 'ClCG01G021920' => 'cla', 'ClCG02G008870' => 'cla', 'ClCG02G020840' => 'cla', 'ClCG02G021930' => 'cla', 'COL.COLO4_19302' => 'col', 'COL.COLO4_25262' => 'col', 'COL.COLO4_31788' => 'col', 'Cpa.g.c34684' => 'cpa', 'Cpa.g.c36520.1' => 'cpa', 'Cpa.g.c45626' => 'cpa', 'Cpa.g.sc121.17' => 'cpa', 'Cpa.g.sc13.22' => 'cpa', 'Cpa.g.sc87.88' => 'cpa', 'Cre06.g261800' => 'cre', 'CsaV3_1G014500' => 'csa', 'CsaV3_1G014510' => 'csa', 'CsaV3_2G034880' => 'csa', 'CsaV3_6G014760' => 'csa', 'CsaV3_6G021500' => 'csa', 'CsaV3_6G048980' => 'csa', 'CSS0002511' => 'camsi', 'CSS0007556' => 'camsi', 'CSS0008532' => 'camsi', 'CSS0009709' => 'camsi', 'CSS0010486' => 'camsi', 'CSS0016768' => 'camsi', 'CSS0023512' => 'camsi', 'CSS0025341' => 'camsi', 'CSS0027999' => 'camsi', 'CSS0028944' => 'camsi', 'CSS0032292' => 'camsi', 'CSS0032464' => 'camsi', 'CSS0037153' => 'camsi', 'CSS0039256' => 'camsi', 'CSS0048392' => 'camsi', 'CSS0050458' => 'camsi', 'DCAR_004224' => 'dca', 'DCAR_006147' => 'dca', 'DCAR_006465' => 'dca', 'DCAR_008159' => 'dca', 'DCAR_012164' => 'dca', 'DCAR_019764' => 'dca', 'Dinv05418' => 'din', 'Dinv10839' => 'din', 'Dinv12521' => 'din', 'Dinv13900' => 'din', 'Dinv29426' => 'din', 'Duzib150G0263' => 'dzi', 'Duzib168G1178' => 'dzi', 'Duzib168G1924' => 'dzi', 'Duzib170G0299' => 'dzi', 'Duzib170G0813' => 'dzi', 'Duzib235G1128' => 'dzi', 'Duzib248G1060' => 'dzi', 'ECA232G1910' => 'eca', 'ECA233G4621' => 'eca', 'ECA238G1216' => 'eca', 'ECA238G1784' => 'eca', 'ECA248G1242' => 'eca', 'EL10Ac8g20071' => 'bvu', 'EL10Ac9g21086' => 'bvu', 'EL10Ac9g22407' => 'bvu', 'EL10Ac9g22412' => 'bvu', 'Eucgr.A01119' => 'egr', 'Eucgr.E04043' => 'egr', 'Eucgr.J00428' => 'egr', 'Eucgr.J00958' => 'egr', 'FAN11G3091' => 'fan', 'FAN11G3651' => 'fan', 'FAN16G2566' => 'fan', 'FAN21G3155' => 'fan', 'FAN21G3400' => 'fan', 'FAN21G3543' => 'fan', 'FAN25G0234' => 'fan', 'FAN25G1422' => 'fan', 'FAN25G3392' => 'fan', 'FvH4_3g01940' => 'fve', 'FvH4_3g29870' => 'fve', 'FvH4_3g33680' => 'fve', 'Glyma.09G004200' => 'gma', 'Glyma.11G151288' => 'gma', 'Glyma.11G189100' => 'gma', 'Glyma.12G072500' => 'gma', 'Glyma.12G085500' => 'gma', 'Glyma.12G181800' => 'gma', 'Glyma.12G193000' => 'gma', 'Glyma.13G309300' => 'gma', 'Glyma.13G319000' => 'gma', 'Glyma.17G012600' => 'gma', 'Gohir.A06G148600' => 'ghi', 'Gohir.A07G115800' => 'ghi', 'Gohir.A08G003600' => 'ghi', 'Gohir.A09G093300' => 'ghi', 'Gohir.A09G105400' => 'ghi', 'Gohir.A09G105500' => 'ghi', 'Gohir.D06G154600' => 'ghi', 'Gohir.D07G120200' => 'ghi', 'Gohir.D08G013900' => 'ghi', 'Gohir.D09G093100' => 'ghi', 'Gohir.D09G102200' => 'ghi', 'Gohir.D09G102300' => 'ghi', 'Gorai.001G129400' => 'gra', 'Gorai.004G008200' => 'gra', 'Gorai.006G109800' => 'gra', 'Gorai.006G119500' => 'gra', 'Gorai.006G121300' => 'gra', 'Gorai.010G180700' => 'gra', 'GSVIVG01012716001' => 'vvi', 'GSVIVG01025118001' => 'vvi', 'GSVIVG01030439001' => 'vvi', 'GSVIVG01031397001' => 'vvi', 'HanXRQChr01g0004201' => 'han', 'HanXRQChr02g0054941' => 'han', 'HanXRQChr05g0141811' => 'han', 'HanXRQChr07g0197751' => 'han', 'HanXRQChr11g0346691' => 'han', 'HanXRQChr13g0396971' => 'han', 'HanXRQChr14g0432951' => 'han', 'HanXRQChr14g0452001' => 'han', 'HanXRQChr15g0496681' => 'han', 'HanXRQChr17g0557491' => 'han', 'HanXRQChr17g0557501' => 'han', 'Haze_06809' => 'cav', 'Haze_12852' => 'cav', 'Haze_15850' => 'cav', 'Haze_23446' => 'cav', 'Haze_23942' => 'cav', 'Haze_23943' => 'cav', 'Hma1.2p1_0091F.1_g046450' => 'hma', 'Hma1.2p1_0128F.1_g059910' => 'hma', 'Hma1.2p1_0249F.1_g102260' => 'hma', 'Hma1.2p1_0453F.1_g156190' => 'hma', 'Hma1.2p1_0695F.1_g204380' => 'hma', 'Hma1.2p1_0749F.1_g212650' => 'hma', 'Hma1.2p1_2156F.1_g315420' => 'hma', 'Hma1.2p1_2686F.1_g326940' => 'hma', 'HPP92_006428' => 'vpl', 'HPP92_012069' => 'vpl', 'HPP92_014129' => 'vpl', 'HPP92_014133' => 'vpl', 'HPP92_017315' => 'vpl', 'HPP92_026445' => 'vpl', 'HPP92_026446' => 'vpl', 'Hund00774' => 'sun', 'Hund07682' => 'sun', 'Hund21413' => 'sun', 'Hund23462' => 'sun', 'Hund23463' => 'sun', 'Lalb_Chr03g0027911' => 'lal', 'Lalb_Chr13g0304271' => 'lal', 'Lalb_Chr19g0137471' => 'lal', 'Lalb_Chr22g0350651' => 'lal', 'Lalb_Chr24g0395151' => 'lal', 'Lj1A1231T40' => 'lonja', 'Lj1A221T48' => 'lonja', 'Lj1C924T12' => 'lonja', 'Lj2C993G6' => 'lonja', 'Lj3g0005790' => 'lja', 'Lj3g0015432' => 'lja', 'Lj3g0017722' => 'lja', 'Lj3g0018497' => 'lja', 'Lj4g0025071' => 'lja', 'Lsat_1_v5_gn_1_129680' => 'lsa', 'Lsat_1_v5_gn_2_25321' => 'lsa', 'Lsat_1_v5_gn_2_95461' => 'lsa', 'Lsat_1_v5_gn_4_159620' => 'lsa', 'Lsat_1_v5_gn_6_41301' => 'lsa', 'Lsat_1_v5_gn_6_74660' => 'lsa', 'Lsat_1_v5_gn_7_11520' => 'lsa', 'Lsat_1_v5_gn_9_67680' => 'lsa', 'Manes.04G008300' => 'mes', 'Manes.04G008400' => 'mes', 'Manes.04G026500' => 'mes', 'Manes.10G135300' => 'mes', 'Manes.11G157300' => 'mes', 'Manes.12G074000' => 'mes', 'Manes.16G006200' => 'mes', 'Manes.17G026400' => 'mes', 'Mapoly0024s0086' => 'mpo', 'Mapoly0024s0087' => 'mpo', 'Mapoly0071s0057' => 'mpo', 'Mapoly0204s0012' => 'mpo', 'MBI04_g37681_MAGBIO' => 'mbi', 'MBI05_g17779_MAGBIO' => 'mbi', 'MBI12_g31184_MAGBIO' => 'mbi', 'MBI17_g11083_MAGBIO' => 'mbi', 'MBI18_g03883_MAGBIO' => 'mbi', 'MBI18_g28940_MAGBIO' => 'mbi', 'MCO01G690' => 'mco', 'MD03G1109900' => 'mdo', 'MD03G1134800' => 'mdo', 'MD05G1348000' => 'mdo', 'MD10G1322400' => 'mdo', 'MD11G1123300' => 'mdo', 'MD11G1157600' => 'mdo', 'Medtr2g084875' => 'mtr', 'Medtr2g088130' => 'mtr', 'Medtr4g055310' => 'mtr', 'Medtr4g061070' => 'mtr', 'Medtr4g132250' => 'mtr', 'MELO3C004795.2' => 'cme', 'MELO3C004797.2' => 'cme', 'MELO3C007396.2' => 'cme', 'MELO3C019277.2' => 'cme', 'MELO3C021449.2' => 'cme', 'MELO3C025736.2' => 'cme', 'Migut.D02175' => 'egut', 'Migut.H01573' => 'egut', 'Migut.M01327' => 'egut', 'Migut.N02513' => 'egut', 'MSTRG.14638' => 'ama', 'MSTRG.18632' => 'ama', 'MSTRG.7203' => 'ama', 'Nitab4.5_0000533g0140' => 'nta', 'Nitab4.5_0000888g0150' => 'nta', 'Nitab4.5_0001453g0040' => 'nta', 'Nitab4.5_0002827g0090' => 'nta', 'Nitab4.5_0003082g0040' => 'nta', 'Nitab4.5_0007799g0040' => 'nta', 'Nitab4.5_0008983g0010' => 'nta', 'Nitab4.5_0009017g0020' => 'nta', 'Nn1g02132' => 'nnu', 'Nn1g03492' => 'nnu', 'Nn1g03493' => 'nnu', 'Nn1g03494' => 'nnu', 'Nn1g07164' => 'nnu', 'Nn1g07291' => 'nnu', 'Nn2g10655' => 'nnu', 'Nn2g11652' => 'nnu', 'Nn2g14008' => 'nnu', 'Nn3g17476' => 'nnu', 'Nn3g17477' => 'nnu', 'Nn4g22370' => 'nnu', 'Nn4g25255' => 'nnu', 'Nn5g27755' => 'nnu', 'Nn6g34260' => 'nnu', 'Nn6g35041' => 'nnu', 'Oeu005924.1' => 'oeu', 'Oeu008383.1' => 'oeu', 'Oeu014928.1' => 'oeu', 'Oeu019889.1' => 'oeu', 'Oeu022271.1' => 'oeu', 'Oeu025271.1' => 'oeu', 'Oeu036302.1' => 'oeu', 'Oeu044100.1' => 'oeu', 'Os01g0528300' => 'osa', 'Os03g0286200' => 'osa', 'Os04g0406600' => 'osa', 'Os07g0512000' => 'osa', 'Os07g0694600' => 'osa', 'Os08g0411000' => 'osa', 'Os09g0565700' => 'osa', 'Os09g0566050' => 'osa', 'Os10g0523700' => 'osa', 'Peaxi162Scf00002g00514' => 'pax', 'Peaxi162Scf00047g01817' => 'pax', 'Peaxi162Scf00114g00001' => 'pax', 'Peaxi162Scf00147g00613' => 'pax', 'Peaxi162Scf00389g00425' => 'pax', 'PGR042G1139' => 'pgr', 'PGR042G3273' => 'pgr', 'PGR102G2180' => 'pgr', 'PGR119G0234' => 'pgr', 'PGR119G0668' => 'pgr', 'PGSC0003DMG400007122' => 'stu', 'PGSC0003DMG400016478' => 'stu', 'PGSC0003DMG400025374' => 'stu', 'PGSC0003DMG400026536' => 'stu', 'Phvul.003G079600' => 'pvu', 'Phvul.005G115600' => 'pvu', 'Phvul.005G127100' => 'pvu', 'Phvul.006G149500' => 'pvu', 'Phvul.006G149600' => 'pvu', 'Phvul.011G071800' => 'pvu', 'Phvul.011G090400' => 'pvu', 'Potri.004G013400' => 'ptr', 'Potri.004G188100' => 'ptr', 'Potri.008G195500' => 'ptr', 'Potri.009G148800' => 'ptr', 'Potri.011G004700' => 'ptr', 'Pp3c17_22810' => 'ppa', 'Pp3c18_4480' => 'ppa', 'Pp3c19_13030' => 'ppa', 'Pp3c1_33620' => 'ppa', 'Pp3c2_9380' => 'ppa', 'PRCOL_00001023' => 'pco', 'Prupe.3G216300' => 'ppe', 'Prupe.4G019500' => 'ppe', 'Prupe.6G092500' => 'ppe', 'Prupe.6G119200' => 'ppe', 'Psat0s1945g0080' => 'psa', 'Psat0s4167g0040' => 'psa', 'Psat1g185800' => 'psa', 'Psat4g006440' => 'psa', 'Psat4g006480' => 'psa', 'Psat4g168120' => 'psa', 'Psat5g255680' => 'psa', 'Psat5g261760' => 'psa', 'Psat7g222120' => 'psa', 'PSO063G7252' => 'pso', 'PSO170G4778' => 'pso', 'PSO210G2249' => 'pso', 'PSO339G2411' => 'pso', 'PSO339G2457' => 'pso', 'PSO339G2854' => 'pso', 'PSO339G4288' => 'pso', 'PSO339G4615' => 'pso', 'PSO384G2796' => 'pso', 'PSO384G2940' => 'pso', 'PSO384G4227' => 'pso', 'PSO478G1425' => 'pso', 'PSO541G3863' => 'pso', 'PSO675G0507' => 'pso', 'PSO782G0338' => 'pso', 'PSO832G0644' => 'pso', 'QL01p013664' => 'qlo', 'QL01p036598' => 'qlo', 'QL05p072984' => 'qlo', 'QL08p005768' => 'qlo', 'QL08p032743' => 'qlo', 'QL93p0073_0439' => 'qlo', 'QL93p0073_0444' => 'qlo', 'RcHm_v2.0_Chr5g0002851' => 'rch', 'RcHm_v2.0_Chr5g0055201' => 'rch', 'RcHm_v2.0_Chr5g0061191' => 'rch', 'RcHm_v2.0_Chr7g0203231' => 'rch', 'Rhsim01G0208100' => 'rsi', 'Rhsim01G0208200' => 'rsi', 'Rhsim02G0106500' => 'rsi', 'Rhsim03G0107900' => 'rsi', 'Rhsim06G0163400' => 'rsi', 'Rhsim13G0105200' => 'rsi', 'Sabra04G0006300' => 'sbr', 'Sabra04G0127000' => 'sbr', 'Sabra08G0148700' => 'sbr', 'Sabra09G0117400' => 'sbr', 'SalBow1G3326' => 'sbo', 'SalBow3G3228' => 'sbo', 'SalBow6G1634' => 'sbo', 'SalBow6G3603' => 'sbo', 'SalBow6G5266' => 'sbo', 'SalBow7G2265' => 'sbo', 'SalBow8G0850' => 'sbo', 'SalBow8G2592' => 'sbo', 'Sc05g0009240' => 'sci', 'Sc12g0002300' => 'sci', 'Sc21g0000100' => 'sci', 'Sc21g0004720' => 'sci', 'Sed0002949' => 'sed', 'Sed0004114' => 'sed', 'Sed0004306' => 'sed', 'Sed0006172' => 'sed', 'Sed0008413' => 'sed', 'Sed0013809' => 'sed', 'Sed0019556' => 'sed', 'SEGI_03570' => 'sgi', 'SEGI_07859' => 'sgi', 'SEGI_15042' => 'sgi', 'SEGI_16263' => 'sgi', 'SEGI_16552' => 'sgi', 'SEGI_24331' => 'sgi', 'SEGI_27316' => 'sgi', 'SEGI_29521' => 'sgi', 'SEGI_41342' => 'sgi', 'SGA_v2.0_scaffold27G11617' => 'sas', 'SGA_v2.0_scaffold316G48428' => 'sas', 'SGA_v2.0_scaffold49G18261' => 'sas', 'SGA_v2.0_scaffold7G03831' => 'sas', 'SGA_v2.0_scaffold93G28359' => 'sas', 'SHI02210' => 'shi', 'SHI06028' => 'shi', 'SHI06321' => 'shi', 'SMO111G0012' => 'smo', 'SMO228G0080' => 'smo', 'SMO356G0756' => 'smo', 'Solyc02g080620.3' => 'sly', 'Solyc06g074530.1' => 'sly', 'Solyc11g066890.1' => 'sly', 'Solyc11g072520.3' => 'sly', 'Sopen02g025330' => 'spe', 'Sopen06g031000' => 'spe', 'Sopen09g008240' => 'spe', 'Sopen09g025210' => 'spe', 'Sopen11g026600' => 'spe', 'Sopen11g030170' => 'spe', 'Sp1g10420' => 'spa', 'Sp3g06570' => 'spa', 'Sp4g10660' => 'spa', 'Sp5g16460' => 'spa', 'Sp6g22710' => 'spa', 'TAR365G0112' => 'tar', 'TAR369G0717' => 'tar', 'TAR374G0976' => 'tar', 'TAR623G1128' => 'tar', 'TAR626G1937' => 'tar', 'TAR627G0123' => 'tar', 'TAR628G0305' => 'tar', 'TAR636G1176' => 'tar', 'TAR636G2442' => 'tar', 'THA.LOC104800556' => 'tha', 'THA.LOC104809501' => 'tha', 'THA.LOC104815126' => 'tha', 'THA.LOC104815732' => 'tha', 'THA.LOC104823528' => 'tha', 'Thecc.02G365600' => 'tca', 'Thecc.06G222300' => 'tca', 'Thecc.09G261800' => 'tca', 'Thecc.09G291400' => 'tca', 'Thhalv10003028m.g' => 'esa', 'Thhalv10007886m.g' => 'esa', 'Thhalv10016085m.g' => 'esa', 'Thhalv10016681m.g' => 'esa', 'Thhalv10020951m.g' => 'esa', 'TPR.G15598' => 'tpr', 'TPR.G29305' => 'tpr', 'TPR.G32395' => 'tpr', 'TPR.G36998' => 'tpr', 'TPR.G4227' => 'tpr', 'TWI18G1433' => 'twi', 'TWI31G0755' => 'twi', 'TWI38G0912' => 'twi', 'TWI75G1097' => 'twi', 'TWI75G1619' => 'twi', 'TWI79G1336' => 'twi', 'unitig_0.g943' => 'ugi', 'unitig_0.g944' => 'ugi', 'unitig_22.g6646' => 'ugi', 'unitig_37.g12681' => 'ugi', 'unitig_8.g3290' => 'ugi', 'vmacro03278' => 'vma', 'vmacro12197' => 'vma', 'vmacro14478' => 'vma', 'vmacro15787' => 'vma', 'vmacro15789' => 'vma', 'vmacro15790' => 'vma', 'vmacro15806' => 'vma', 'vmacro22907' => 'vma', 'vmacro22908' => 'vma', 'vmacro22909' => 'vma', 'vmacro23108' => 'vma', 'VMungo0540G0540' => 'vmu', 'VMungo0540G2468' => 'vmu', 'VMungo1080G0390' => 'vmu', 'VMungo1080G1165' => 'vmu', 'VMungo1127G0170' => 'vmu', 'VMungo1127G2099' => 'vmu', 'VMungo1215G3013' => 'vmu', 'Zm00001eb013110' => 'zma', 'Zm00001eb084260' => 'zma', 'Zm00001eb096110' => 'zma', 'Zm00001eb217510' => 'zma', 'Zm00001eb322550' => 'zma', 'Zm00001eb390770' => 'zma', 'Zm00001eb397170' => 'zma', 'Zm00001eb404610' => 'zma', 'Zm00001eb421790' => 'zma' ) $gf_id = 'HOM05D000911' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000911' ) $data_identifier = 'HOM05D000911' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 16, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 5, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 6, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 8, 'nnu' => (int) 16, 'oeu' => (int) 8, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 5, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 16, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421790' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000911', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27780' => 'bna', 'A03p35380' => 'bna', 'A04p21160' => 'bna', 'A05p40570' => 'bna', 'A06p26900' => 'bna', 'A08p33230' => 'bna', 'A09p65960' => 'bna', 'A10p18290' => 'bna', 'Aa31LG1G12990' => 'aar', 'Aa31LG1G2980' => 'aar', 'Aa31LG4G14320' => 'aar', 'Aa31LG7G11800' => 'aar', 'Aa31sc36G50' => 'aar', 'Aa31sc36G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3721' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5459' => 'aag', 'Actinidia03028' => 'ach', 'Actinidia03753' => 'ach', 'Actinidia04187' => 'ach', 'Actinidia05509' => 'ach', 'Actinidia24180' => 'ach', 'Actinidia26906' => 'ach', 'Actinidia37097' => 'ach', 'Actinidia38249' => 'ach', 'Ah.01g003470' => 'amhyb', 'Ah.01g004580' => 'amhyb', 'Ah.01g014850' => 'amhyb', 'Ah.01g016830' => 'amhyb', 'Ah.14g088000' => 'amhyb', 'AL1G22980' => 'aly', 'AL3G18990' => 'aly', 'AL4G22440' => 'aly', 'AL4G33180' => 'aly', 'AL5G22920' => 'aly', 'AL6G33660' => 'aly', 'AL8G20720' => 'aly', 'Aqoxy1G00935' => 'aox', 'Aqoxy1G02094' => 'aox', 'Aqoxy2G01239' => 'aox', 'Aqoxy4G01870' => 'aox', 'Aqoxy7G00450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.36ZVTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71EM27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5D6C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH3WRE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3NCM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RIM768' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YB5YRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z36GDV' => 'arhy', 'AT1G08250' => 'ath', 'AT1G11790' => 'ath', 'AT2G27820' => 'ath', 'AT3G07630' => 'ath', 'AT3G44720' => 'ath', 'AT5G22630' => 'ath', 'ATR0693G304' => 'atr', 'ATR0794G109' => 'atr', 'ATR0820G120' => 'atr', 'ATR1159G064' => 'atr', 'Atru.chr10.2239' => 'acertr', 'Atru.chr3.3371' => 'acertr', 'Atru.chr6.3202' => 'acertr', 'AUR62006499' => 'cqu', 'AUR62012718' => 'cqu', 'AUR62021938' => 'cqu', 'AUR62023932' => 'cqu', 'AUR62025034' => 'cqu', 'AUR62025035' => 'cqu', 'AUR62038307' => 'cqu', 'AUR62043466' => 'cqu', 'BcaB02g10748' => 'bca', 'BcaB03g13231' => 'bca', 'BcaB03g14689' => 'bca', 'BcaB05g22716' => 'bca', 'BcaB06g28172' => 'bca', 'BcaB08g36413' => 'bca', 'BcaC01g02186' => 'bca', 'BcaC01g04272' => 'bca', 'BcaC02g08080' => 'bca', 'BcaC02g08227' => 'bca', 'BcaC03g13901' => 'bca', 'BcaC04g19593' => 'bca', 'BcaC04g20874' => 'bca', 'BcaC05g29557' => 'bca', 'BcaC06g35505' => 'bca', 'BcaC07g41954' => 'bca', 'BcaC07g41955' => 'bca', 'BcaC07g41956' => 'bca', 'BcaC07g42519' => 'bca', 'BcaC07g42520' => 'bca', 'BcaC07g42523' => 'bca', 'BcaC07g42524' => 'bca', 'BcaC07g42525' => 'bca', 'BcaC08g47480' => 'bca', 'BcaC08g47481' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00530' => 'bna', 'BolC2t07178H' => 'bol', 'BolC3t16567H' => 'bol', 'BolC4t27234H' => 'bol', 'BolC5t29728H' => 'bol', 'BolC5t34622H' => 'bol', 'BolC6t40321H' => 'bol', 'BolC7t42028H' => 'bol', 'BolC8t49125H' => 'bol', 'BolC8t52538H' => 'bol', 'BolC8t52539H' => 'bol', 'BolC9t56681H' => 'bol', 'BolC9t58266H' => 'bol', 'BolSC21t60294H' => 'bol', 'BraA02t05670Z' => 'bra', 'BraA03t12716Z' => 'bra', 'BraA04t17685Z' => 'bra', 'BraA05t22788Z' => 'bra', 'BraA06t24032Z' => 'bra', 'BraA06t25625Z' => 'bra', 'BraA07t27930Z' => 'bra', 'BraA08t35242Z' => 'bra', 'BraA09t38609Z' => 'bra', 'BraA10t43905Z' => 'bra', 'C02p11060' => 'bna', 'C03p42990' => 'bna', 'C03p67310' => 'bna', 'C04p56990' => 'bna', 'C04p58660' => 'bna', 'C05p09890' => 'bna', 'C05p59680' => 'bna', 'C06p19830' => 'bna', 'C06p53040' => 'bna', 'C07p15230' => 'bna', 'C08p50070' => 'bna', 'C08p50090' => 'bna', 'C09p38330' => 'bna', 'C09p53940' => 'bna', 'CAN.G1014.1' => 'can', 'CAN.G644.30' => 'can', 'CAN.G84.47' => 'can', 'CAN.G919.8' => 'can', 'CANSAT54G0113' => 'cansat', 'CANSAT54G1286' => 'cansat', 'CANSAT64G1020' => 'cansat', 'CARHR008080' => 'chi', 'CARHR008090' => 'chi', 'CARHR012130' => 'chi', 'CARHR038390' => 'chi', 'CARHR082330' => 'chi', 'CARHR120520' => 'chi', 'CARHR151470' => 'chi', 'CARHR190950' => 'chi', 'Carub.0001s0760' => 'cru', 'Carub.0001s1146' => 'cru', 'Carub.0003s0721' => 'cru', 'Carub.0004s0858' => 'cru', 'Carub.0005s1040' => 'cru', 'Carub.0006s2035' => 'cru', 'Carub.0015s0005' => 'cru', 'Ca_01607_v3' => 'car', 'Ca_01677_v3' => 'car', 'Ca_06087_v3' => 'car', 'Ca_19238_v3' => 'car', 'Ca_19373_v3' => 'car', 'Ca_21079_v3' => 'car', 'CBR_g54016' => 'cbr', 'CBR_g54018' => 'cbr', 'CBR_g54020' => 'cbr', 'Cc01_g09780' => 'ccan', 'Cc01_g11680' => 'ccan', 'Cc02_g15610' => 'ccan', 'Cc05_g04350' => 'ccan', 'Cc09_g01580' => 'ccan', 'CDE01G0795' => 'cde', 'CDE02G2024' => 'cde', 'CDE02G2260' => 'cde', 'CDE02G4561' => 'cde', 'CDE05G2733' => 'cde', 'CDE05G3422' => 'cde', 'CDE06G2003' => 'cde', 'CDE08G0576' => 'cde', 'CDE09G0048' => 'cde', 'CDE11G0805' => 'cde', 'Cfa003644' => 'cfa', 'Cfa006290' => 'cfa', 'Cfa010080' => 'cfa', 'Cfa011376' => 'cfa', 'Cfa011576' => 'cfa', 'Cfa011577' => 'cfa', 'Cfa014389' => 'cfa', 'Ciclev10006044m.g' => 'ccl', 'Ciclev10006954m.g' => 'ccl', 'Ciclev10015131m.g' => 'ccl', 'Ciclev10015580m.g' => 'ccl', 'Ciclev10028359m.g' => 'ccl', 'Ciclev10028573m.g' => 'ccl', 'CiPaw.03G159300' => 'cil', 'CiPaw.04G115100' => 'cil', 'CiPaw.09G092800' => 'cil', 'CiPaw.10G071800' => 'cil', 'CiPaw.13G105800' => 'cil', 'CiPaw.13G141000' => 'cil', 'CiPaw.14G103400' => 'cil', 'ClCG01G012700' => 'cla', 'ClCG01G012720' => 'cla', 'ClCG01G021920' => 'cla', 'ClCG02G008870' => 'cla', 'ClCG02G020840' => 'cla', 'ClCG02G021930' => 'cla', 'COL.COLO4_19302' => 'col', 'COL.COLO4_25262' => 'col', 'COL.COLO4_31788' => 'col', 'Cpa.g.c34684' => 'cpa', 'Cpa.g.c36520.1' => 'cpa', 'Cpa.g.c45626' => 'cpa', 'Cpa.g.sc121.17' => 'cpa', 'Cpa.g.sc13.22' => 'cpa', 'Cpa.g.sc87.88' => 'cpa', 'Cre06.g261800' => 'cre', 'CsaV3_1G014500' => 'csa', 'CsaV3_1G014510' => 'csa', 'CsaV3_2G034880' => 'csa', 'CsaV3_6G014760' => 'csa', 'CsaV3_6G021500' => 'csa', 'CsaV3_6G048980' => 'csa', 'CSS0002511' => 'camsi', 'CSS0007556' => 'camsi', 'CSS0008532' => 'camsi', 'CSS0009709' => 'camsi', 'CSS0010486' => 'camsi', 'CSS0016768' => 'camsi', 'CSS0023512' => 'camsi', 'CSS0025341' => 'camsi', 'CSS0027999' => 'camsi', 'CSS0028944' => 'camsi', 'CSS0032292' => 'camsi', 'CSS0032464' => 'camsi', 'CSS0037153' => 'camsi', 'CSS0039256' => 'camsi', 'CSS0048392' => 'camsi', 'CSS0050458' => 'camsi', 'DCAR_004224' => 'dca', 'DCAR_006147' => 'dca', 'DCAR_006465' => 'dca', 'DCAR_008159' => 'dca', 'DCAR_012164' => 'dca', 'DCAR_019764' => 'dca', 'Dinv05418' => 'din', 'Dinv10839' => 'din', 'Dinv12521' => 'din', 'Dinv13900' => 'din', 'Dinv29426' => 'din', 'Duzib150G0263' => 'dzi', 'Duzib168G1178' => 'dzi', 'Duzib168G1924' => 'dzi', 'Duzib170G0299' => 'dzi', 'Duzib170G0813' => 'dzi', 'Duzib235G1128' => 'dzi', 'Duzib248G1060' => 'dzi', 'ECA232G1910' => 'eca', 'ECA233G4621' => 'eca', 'ECA238G1216' => 'eca', 'ECA238G1784' => 'eca', 'ECA248G1242' => 'eca', 'EL10Ac8g20071' => 'bvu', 'EL10Ac9g21086' => 'bvu', 'EL10Ac9g22407' => 'bvu', 'EL10Ac9g22412' => 'bvu', 'Eucgr.A01119' => 'egr', 'Eucgr.E04043' => 'egr', 'Eucgr.J00428' => 'egr', 'Eucgr.J00958' => 'egr', 'FAN11G3091' => 'fan', 'FAN11G3651' => 'fan', 'FAN16G2566' => 'fan', 'FAN21G3155' => 'fan', 'FAN21G3400' => 'fan', 'FAN21G3543' => 'fan', 'FAN25G0234' => 'fan', 'FAN25G1422' => 'fan', 'FAN25G3392' => 'fan', 'FvH4_3g01940' => 'fve', 'FvH4_3g29870' => 'fve', 'FvH4_3g33680' => 'fve', 'Glyma.09G004200' => 'gma', 'Glyma.11G151288' => 'gma', 'Glyma.11G189100' => 'gma', 'Glyma.12G072500' => 'gma', 'Glyma.12G085500' => 'gma', 'Glyma.12G181800' => 'gma', 'Glyma.12G193000' => 'gma', 'Glyma.13G309300' => 'gma', 'Glyma.13G319000' => 'gma', 'Glyma.17G012600' => 'gma', 'Gohir.A06G148600' => 'ghi', 'Gohir.A07G115800' => 'ghi', 'Gohir.A08G003600' => 'ghi', 'Gohir.A09G093300' => 'ghi', 'Gohir.A09G105400' => 'ghi', 'Gohir.A09G105500' => 'ghi', 'Gohir.D06G154600' => 'ghi', 'Gohir.D07G120200' => 'ghi', 'Gohir.D08G013900' => 'ghi', 'Gohir.D09G093100' => 'ghi', 'Gohir.D09G102200' => 'ghi', 'Gohir.D09G102300' => 'ghi', 'Gorai.001G129400' => 'gra', 'Gorai.004G008200' => 'gra', 'Gorai.006G109800' => 'gra', 'Gorai.006G119500' => 'gra', 'Gorai.006G121300' => 'gra', 'Gorai.010G180700' => 'gra', 'GSVIVG01012716001' => 'vvi', 'GSVIVG01025118001' => 'vvi', 'GSVIVG01030439001' => 'vvi', 'GSVIVG01031397001' => 'vvi', 'HanXRQChr01g0004201' => 'han', 'HanXRQChr02g0054941' => 'han', 'HanXRQChr05g0141811' => 'han', 'HanXRQChr07g0197751' => 'han', 'HanXRQChr11g0346691' => 'han', 'HanXRQChr13g0396971' => 'han', 'HanXRQChr14g0432951' => 'han', 'HanXRQChr14g0452001' => 'han', 'HanXRQChr15g0496681' => 'han', 'HanXRQChr17g0557491' => 'han', 'HanXRQChr17g0557501' => 'han', 'Haze_06809' => 'cav', 'Haze_12852' => 'cav', 'Haze_15850' => 'cav', 'Haze_23446' => 'cav', 'Haze_23942' => 'cav', 'Haze_23943' => 'cav', 'Hma1.2p1_0091F.1_g046450' => 'hma', 'Hma1.2p1_0128F.1_g059910' => 'hma', 'Hma1.2p1_0249F.1_g102260' => 'hma', 'Hma1.2p1_0453F.1_g156190' => 'hma', 'Hma1.2p1_0695F.1_g204380' => 'hma', 'Hma1.2p1_0749F.1_g212650' => 'hma', 'Hma1.2p1_2156F.1_g315420' => 'hma', 'Hma1.2p1_2686F.1_g326940' => 'hma', 'HPP92_006428' => 'vpl', 'HPP92_012069' => 'vpl', 'HPP92_014129' => 'vpl', 'HPP92_014133' => 'vpl', 'HPP92_017315' => 'vpl', 'HPP92_026445' => 'vpl', 'HPP92_026446' => 'vpl', 'Hund00774' => 'sun', 'Hund07682' => 'sun', 'Hund21413' => 'sun', 'Hund23462' => 'sun', 'Hund23463' => 'sun', 'Lalb_Chr03g0027911' => 'lal', 'Lalb_Chr13g0304271' => 'lal', 'Lalb_Chr19g0137471' => 'lal', 'Lalb_Chr22g0350651' => 'lal', 'Lalb_Chr24g0395151' => 'lal', 'Lj1A1231T40' => 'lonja', 'Lj1A221T48' => 'lonja', 'Lj1C924T12' => 'lonja', 'Lj2C993G6' => 'lonja', 'Lj3g0005790' => 'lja', 'Lj3g0015432' => 'lja', 'Lj3g0017722' => 'lja', 'Lj3g0018497' => 'lja', 'Lj4g0025071' => 'lja', 'Lsat_1_v5_gn_1_129680' => 'lsa', 'Lsat_1_v5_gn_2_25321' => 'lsa', 'Lsat_1_v5_gn_2_95461' => 'lsa', 'Lsat_1_v5_gn_4_159620' => 'lsa', 'Lsat_1_v5_gn_6_41301' => 'lsa', 'Lsat_1_v5_gn_6_74660' => 'lsa', 'Lsat_1_v5_gn_7_11520' => 'lsa', 'Lsat_1_v5_gn_9_67680' => 'lsa', 'Manes.04G008300' => 'mes', 'Manes.04G008400' => 'mes', 'Manes.04G026500' => 'mes', 'Manes.10G135300' => 'mes', 'Manes.11G157300' => 'mes', 'Manes.12G074000' => 'mes', 'Manes.16G006200' => 'mes', 'Manes.17G026400' => 'mes', 'Mapoly0024s0086' => 'mpo', 'Mapoly0024s0087' => 'mpo', 'Mapoly0071s0057' => 'mpo', 'Mapoly0204s0012' => 'mpo', 'MBI04_g37681_MAGBIO' => 'mbi', 'MBI05_g17779_MAGBIO' => 'mbi', 'MBI12_g31184_MAGBIO' => 'mbi', 'MBI17_g11083_MAGBIO' => 'mbi', 'MBI18_g03883_MAGBIO' => 'mbi', 'MBI18_g28940_MAGBIO' => 'mbi', 'MCO01G690' => 'mco', 'MD03G1109900' => 'mdo', 'MD03G1134800' => 'mdo', 'MD05G1348000' => 'mdo', 'MD10G1322400' => 'mdo', 'MD11G1123300' => 'mdo', 'MD11G1157600' => 'mdo', 'Medtr2g084875' => 'mtr', 'Medtr2g088130' => 'mtr', 'Medtr4g055310' => 'mtr', 'Medtr4g061070' => 'mtr', 'Medtr4g132250' => 'mtr', 'MELO3C004795.2' => 'cme', 'MELO3C004797.2' => 'cme', 'MELO3C007396.2' => 'cme', 'MELO3C019277.2' => 'cme', 'MELO3C021449.2' => 'cme', 'MELO3C025736.2' => 'cme', 'Migut.D02175' => 'egut', 'Migut.H01573' => 'egut', 'Migut.M01327' => 'egut', 'Migut.N02513' => 'egut', 'MSTRG.14638' => 'ama', 'MSTRG.18632' => 'ama', 'MSTRG.7203' => 'ama', 'Nitab4.5_0000533g0140' => 'nta', 'Nitab4.5_0000888g0150' => 'nta', 'Nitab4.5_0001453g0040' => 'nta', 'Nitab4.5_0002827g0090' => 'nta', 'Nitab4.5_0003082g0040' => 'nta', 'Nitab4.5_0007799g0040' => 'nta', 'Nitab4.5_0008983g0010' => 'nta', 'Nitab4.5_0009017g0020' => 'nta', 'Nn1g02132' => 'nnu', 'Nn1g03492' => 'nnu', 'Nn1g03493' => 'nnu', 'Nn1g03494' => 'nnu', 'Nn1g07164' => 'nnu', 'Nn1g07291' => 'nnu', 'Nn2g10655' => 'nnu', 'Nn2g11652' => 'nnu', 'Nn2g14008' => 'nnu', 'Nn3g17476' => 'nnu', 'Nn3g17477' => 'nnu', 'Nn4g22370' => 'nnu', 'Nn4g25255' => 'nnu', 'Nn5g27755' => 'nnu', 'Nn6g34260' => 'nnu', 'Nn6g35041' => 'nnu', 'Oeu005924.1' => 'oeu', 'Oeu008383.1' => 'oeu', 'Oeu014928.1' => 'oeu', 'Oeu019889.1' => 'oeu', 'Oeu022271.1' => 'oeu', 'Oeu025271.1' => 'oeu', 'Oeu036302.1' => 'oeu', 'Oeu044100.1' => 'oeu', 'Os01g0528300' => 'osa', 'Os03g0286200' => 'osa', 'Os04g0406600' => 'osa', 'Os07g0512000' => 'osa', 'Os07g0694600' => 'osa', 'Os08g0411000' => 'osa', 'Os09g0565700' => 'osa', 'Os09g0566050' => 'osa', 'Os10g0523700' => 'osa', 'Peaxi162Scf00002g00514' => 'pax', 'Peaxi162Scf00047g01817' => 'pax', 'Peaxi162Scf00114g00001' => 'pax', 'Peaxi162Scf00147g00613' => 'pax', 'Peaxi162Scf00389g00425' => 'pax', 'PGR042G1139' => 'pgr', 'PGR042G3273' => 'pgr', 'PGR102G2180' => 'pgr', 'PGR119G0234' => 'pgr', 'PGR119G0668' => 'pgr', 'PGSC0003DMG400007122' => 'stu', 'PGSC0003DMG400016478' => 'stu', 'PGSC0003DMG400025374' => 'stu', 'PGSC0003DMG400026536' => 'stu', 'Phvul.003G079600' => 'pvu', 'Phvul.005G115600' => 'pvu', 'Phvul.005G127100' => 'pvu', 'Phvul.006G149500' => 'pvu', 'Phvul.006G149600' => 'pvu', 'Phvul.011G071800' => 'pvu', 'Phvul.011G090400' => 'pvu', 'Potri.004G013400' => 'ptr', 'Potri.004G188100' => 'ptr', 'Potri.008G195500' => 'ptr', 'Potri.009G148800' => 'ptr', 'Potri.011G004700' => 'ptr', 'Pp3c17_22810' => 'ppa', 'Pp3c18_4480' => 'ppa', 'Pp3c19_13030' => 'ppa', 'Pp3c1_33620' => 'ppa', 'Pp3c2_9380' => 'ppa', 'PRCOL_00001023' => 'pco', 'Prupe.3G216300' => 'ppe', 'Prupe.4G019500' => 'ppe', 'Prupe.6G092500' => 'ppe', 'Prupe.6G119200' => 'ppe', 'Psat0s1945g0080' => 'psa', 'Psat0s4167g0040' => 'psa', 'Psat1g185800' => 'psa', 'Psat4g006440' => 'psa', 'Psat4g006480' => 'psa', 'Psat4g168120' => 'psa', 'Psat5g255680' => 'psa', 'Psat5g261760' => 'psa', 'Psat7g222120' => 'psa', 'PSO063G7252' => 'pso', 'PSO170G4778' => 'pso', 'PSO210G2249' => 'pso', 'PSO339G2411' => 'pso', 'PSO339G2457' => 'pso', 'PSO339G2854' => 'pso', 'PSO339G4288' => 'pso', 'PSO339G4615' => 'pso', 'PSO384G2796' => 'pso', 'PSO384G2940' => 'pso', 'PSO384G4227' => 'pso', 'PSO478G1425' => 'pso', 'PSO541G3863' => 'pso', 'PSO675G0507' => 'pso', 'PSO782G0338' => 'pso', 'PSO832G0644' => 'pso', 'QL01p013664' => 'qlo', 'QL01p036598' => 'qlo', 'QL05p072984' => 'qlo', 'QL08p005768' => 'qlo', 'QL08p032743' => 'qlo', 'QL93p0073_0439' => 'qlo', 'QL93p0073_0444' => 'qlo', 'RcHm_v2.0_Chr5g0002851' => 'rch', 'RcHm_v2.0_Chr5g0055201' => 'rch', 'RcHm_v2.0_Chr5g0061191' => 'rch', 'RcHm_v2.0_Chr7g0203231' => 'rch', 'Rhsim01G0208100' => 'rsi', 'Rhsim01G0208200' => 'rsi', 'Rhsim02G0106500' => 'rsi', 'Rhsim03G0107900' => 'rsi', 'Rhsim06G0163400' => 'rsi', 'Rhsim13G0105200' => 'rsi', 'Sabra04G0006300' => 'sbr', 'Sabra04G0127000' => 'sbr', 'Sabra08G0148700' => 'sbr', 'Sabra09G0117400' => 'sbr', 'SalBow1G3326' => 'sbo', 'SalBow3G3228' => 'sbo', 'SalBow6G1634' => 'sbo', 'SalBow6G3603' => 'sbo', 'SalBow6G5266' => 'sbo', 'SalBow7G2265' => 'sbo', 'SalBow8G0850' => 'sbo', 'SalBow8G2592' => 'sbo', 'Sc05g0009240' => 'sci', 'Sc12g0002300' => 'sci', 'Sc21g0000100' => 'sci', 'Sc21g0004720' => 'sci', 'Sed0002949' => 'sed', 'Sed0004114' => 'sed', 'Sed0004306' => 'sed', 'Sed0006172' => 'sed', 'Sed0008413' => 'sed', 'Sed0013809' => 'sed', 'Sed0019556' => 'sed', 'SEGI_03570' => 'sgi', 'SEGI_07859' => 'sgi', 'SEGI_15042' => 'sgi', 'SEGI_16263' => 'sgi', 'SEGI_16552' => 'sgi', 'SEGI_24331' => 'sgi', 'SEGI_27316' => 'sgi', 'SEGI_29521' => 'sgi', 'SEGI_41342' => 'sgi', 'SGA_v2.0_scaffold27G11617' => 'sas', 'SGA_v2.0_scaffold316G48428' => 'sas', 'SGA_v2.0_scaffold49G18261' => 'sas', 'SGA_v2.0_scaffold7G03831' => 'sas', 'SGA_v2.0_scaffold93G28359' => 'sas', 'SHI02210' => 'shi', 'SHI06028' => 'shi', 'SHI06321' => 'shi', 'SMO111G0012' => 'smo', 'SMO228G0080' => 'smo', 'SMO356G0756' => 'smo', 'Solyc02g080620.3' => 'sly', 'Solyc06g074530.1' => 'sly', 'Solyc11g066890.1' => 'sly', 'Solyc11g072520.3' => 'sly', 'Sopen02g025330' => 'spe', 'Sopen06g031000' => 'spe', 'Sopen09g008240' => 'spe', 'Sopen09g025210' => 'spe', 'Sopen11g026600' => 'spe', 'Sopen11g030170' => 'spe', 'Sp1g10420' => 'spa', 'Sp3g06570' => 'spa', 'Sp4g10660' => 'spa', 'Sp5g16460' => 'spa', 'Sp6g22710' => 'spa', 'TAR365G0112' => 'tar', 'TAR369G0717' => 'tar', 'TAR374G0976' => 'tar', 'TAR623G1128' => 'tar', 'TAR626G1937' => 'tar', 'TAR627G0123' => 'tar', 'TAR628G0305' => 'tar', 'TAR636G1176' => 'tar', 'TAR636G2442' => 'tar', 'THA.LOC104800556' => 'tha', 'THA.LOC104809501' => 'tha', 'THA.LOC104815126' => 'tha', 'THA.LOC104815732' => 'tha', 'THA.LOC104823528' => 'tha', 'Thecc.02G365600' => 'tca', 'Thecc.06G222300' => 'tca', 'Thecc.09G261800' => 'tca', 'Thecc.09G291400' => 'tca', 'Thhalv10003028m.g' => 'esa', 'Thhalv10007886m.g' => 'esa', 'Thhalv10016085m.g' => 'esa', 'Thhalv10016681m.g' => 'esa', 'Thhalv10020951m.g' => 'esa', 'TPR.G15598' => 'tpr', 'TPR.G29305' => 'tpr', 'TPR.G32395' => 'tpr', 'TPR.G36998' => 'tpr', 'TPR.G4227' => 'tpr', 'TWI18G1433' => 'twi', 'TWI31G0755' => 'twi', 'TWI38G0912' => 'twi', 'TWI75G1097' => 'twi', 'TWI75G1619' => 'twi', 'TWI79G1336' => 'twi', 'unitig_0.g943' => 'ugi', 'unitig_0.g944' => 'ugi', 'unitig_22.g6646' => 'ugi', 'unitig_37.g12681' => 'ugi', 'unitig_8.g3290' => 'ugi', 'vmacro03278' => 'vma', 'vmacro12197' => 'vma', 'vmacro14478' => 'vma', 'vmacro15787' => 'vma', 'vmacro15789' => 'vma', 'vmacro15790' => 'vma', 'vmacro15806' => 'vma', 'vmacro22907' => 'vma', 'vmacro22908' => 'vma', 'vmacro22909' => 'vma', 'vmacro23108' => 'vma', 'VMungo0540G0540' => 'vmu', 'VMungo0540G2468' => 'vmu', 'VMungo1080G0390' => 'vmu', 'VMungo1080G1165' => 'vmu', 'VMungo1127G0170' => 'vmu', 'VMungo1127G2099' => 'vmu', 'VMungo1215G3013' => 'vmu', 'Zm00001eb013110' => 'zma', 'Zm00001eb084260' => 'zma', 'Zm00001eb096110' => 'zma', 'Zm00001eb217510' => 'zma', 'Zm00001eb322550' => 'zma', 'Zm00001eb390770' => 'zma', 'Zm00001eb397170' => 'zma', 'Zm00001eb404610' => 'zma', 'Zm00001eb421790' => 'zma' ), 'gf_id' => 'HOM05D000911', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000911' ), 'data_identifier' => 'HOM05D000911', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000911', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27780' => 'bna', 'A03p35380' => 'bna', 'A04p21160' => 'bna', 'A05p40570' => 'bna', 'A06p26900' => 'bna', 'A08p33230' => 'bna', 'A09p65960' => 'bna', 'A10p18290' => 'bna', 'Aa31LG1G12990' => 'aar', 'Aa31LG1G2980' => 'aar', 'Aa31LG4G14320' => 'aar', 'Aa31LG7G11800' => 'aar', 'Aa31sc36G50' => 'aar', 'Aa31sc36G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3721' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5459' => 'aag', 'Actinidia03028' => 'ach', 'Actinidia03753' => 'ach', 'Actinidia04187' => 'ach', 'Actinidia05509' => 'ach', 'Actinidia24180' => 'ach', 'Actinidia26906' => 'ach', 'Actinidia37097' => 'ach', 'Actinidia38249' => 'ach', 'Ah.01g003470' => 'amhyb', 'Ah.01g004580' => 'amhyb', 'Ah.01g014850' => 'amhyb', 'Ah.01g016830' => 'amhyb', 'Ah.14g088000' => 'amhyb', 'AL1G22980' => 'aly', 'AL3G18990' => 'aly', 'AL4G22440' => 'aly', 'AL4G33180' => 'aly', 'AL5G22920' => 'aly', 'AL6G33660' => 'aly', 'AL8G20720' => 'aly', 'Aqoxy1G00935' => 'aox', 'Aqoxy1G02094' => 'aox', 'Aqoxy2G01239' => 'aox', 'Aqoxy4G01870' => 'aox', 'Aqoxy7G00450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.36ZVTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71EM27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5D6C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH3WRE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3NCM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RIM768' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YB5YRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z36GDV' => 'arhy', 'AT1G08250' => 'ath', 'AT1G11790' => 'ath', 'AT2G27820' => 'ath', 'AT3G07630' => 'ath', 'AT3G44720' => 'ath', 'AT5G22630' => 'ath', 'ATR0693G304' => 'atr', 'ATR0794G109' => 'atr', 'ATR0820G120' => 'atr', 'ATR1159G064' => 'atr', 'Atru.chr10.2239' => 'acertr', 'Atru.chr3.3371' => 'acertr', 'Atru.chr6.3202' => 'acertr', 'AUR62006499' => 'cqu', 'AUR62012718' => 'cqu', 'AUR62021938' => 'cqu', 'AUR62023932' => 'cqu', 'AUR62025034' => 'cqu', 'AUR62025035' => 'cqu', 'AUR62038307' => 'cqu', 'AUR62043466' => 'cqu', 'BcaB02g10748' => 'bca', 'BcaB03g13231' => 'bca', 'BcaB03g14689' => 'bca', 'BcaB05g22716' => 'bca', 'BcaB06g28172' => 'bca', 'BcaB08g36413' => 'bca', 'BcaC01g02186' => 'bca', 'BcaC01g04272' => 'bca', 'BcaC02g08080' => 'bca', 'BcaC02g08227' => 'bca', 'BcaC03g13901' => 'bca', 'BcaC04g19593' => 'bca', 'BcaC04g20874' => 'bca', 'BcaC05g29557' => 'bca', 'BcaC06g35505' => 'bca', 'BcaC07g41954' => 'bca', 'BcaC07g41955' => 'bca', 'BcaC07g41956' => 'bca', 'BcaC07g42519' => 'bca', 'BcaC07g42520' => 'bca', 'BcaC07g42523' => 'bca', 'BcaC07g42524' => 'bca', 'BcaC07g42525' => 'bca', 'BcaC08g47480' => 'bca', 'BcaC08g47481' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00530' => 'bna', 'BolC2t07178H' => 'bol', 'BolC3t16567H' => 'bol', 'BolC4t27234H' => 'bol', 'BolC5t29728H' => 'bol', 'BolC5t34622H' => 'bol', 'BolC6t40321H' => 'bol', 'BolC7t42028H' => 'bol', 'BolC8t49125H' => 'bol', 'BolC8t52538H' => 'bol', 'BolC8t52539H' => 'bol', 'BolC9t56681H' => 'bol', 'BolC9t58266H' => 'bol', 'BolSC21t60294H' => 'bol', 'BraA02t05670Z' => 'bra', 'BraA03t12716Z' => 'bra', 'BraA04t17685Z' => 'bra', 'BraA05t22788Z' => 'bra', 'BraA06t24032Z' => 'bra', 'BraA06t25625Z' => 'bra', 'BraA07t27930Z' => 'bra', 'BraA08t35242Z' => 'bra', 'BraA09t38609Z' => 'bra', 'BraA10t43905Z' => 'bra', 'C02p11060' => 'bna', 'C03p42990' => 'bna', 'C03p67310' => 'bna', 'C04p56990' => 'bna', 'C04p58660' => 'bna', 'C05p09890' => 'bna', 'C05p59680' => 'bna', 'C06p19830' => 'bna', 'C06p53040' => 'bna', 'C07p15230' => 'bna', 'C08p50070' => 'bna', 'C08p50090' => 'bna', 'C09p38330' => 'bna', 'C09p53940' => 'bna', 'CAN.G1014.1' => 'can', 'CAN.G644.30' => 'can', 'CAN.G84.47' => 'can', 'CAN.G919.8' => 'can', 'CANSAT54G0113' => 'cansat', 'CANSAT54G1286' => 'cansat', 'CANSAT64G1020' => 'cansat', 'CARHR008080' => 'chi', 'CARHR008090' => 'chi', 'CARHR012130' => 'chi', 'CARHR038390' => 'chi', 'CARHR082330' => 'chi', 'CARHR120520' => 'chi', 'CARHR151470' => 'chi', 'CARHR190950' => 'chi', 'Carub.0001s0760' => 'cru', 'Carub.0001s1146' => 'cru', 'Carub.0003s0721' => 'cru', 'Carub.0004s0858' => 'cru', 'Carub.0005s1040' => 'cru', 'Carub.0006s2035' => 'cru', 'Carub.0015s0005' => 'cru', 'Ca_01607_v3' => 'car', 'Ca_01677_v3' => 'car', 'Ca_06087_v3' => 'car', 'Ca_19238_v3' => 'car', 'Ca_19373_v3' => 'car', 'Ca_21079_v3' => 'car', 'CBR_g54016' => 'cbr', 'CBR_g54018' => 'cbr', 'CBR_g54020' => 'cbr', 'Cc01_g09780' => 'ccan', 'Cc01_g11680' => 'ccan', 'Cc02_g15610' => 'ccan', 'Cc05_g04350' => 'ccan', 'Cc09_g01580' => 'ccan', 'CDE01G0795' => 'cde', 'CDE02G2024' => 'cde', 'CDE02G2260' => 'cde', 'CDE02G4561' => 'cde', 'CDE05G2733' => 'cde', 'CDE05G3422' => 'cde', 'CDE06G2003' => 'cde', 'CDE08G0576' => 'cde', 'CDE09G0048' => 'cde', 'CDE11G0805' => 'cde', 'Cfa003644' => 'cfa', 'Cfa006290' => 'cfa', 'Cfa010080' => 'cfa', 'Cfa011376' => 'cfa', 'Cfa011576' => 'cfa', 'Cfa011577' => 'cfa', 'Cfa014389' => 'cfa', 'Ciclev10006044m.g' => 'ccl', 'Ciclev10006954m.g' => 'ccl', 'Ciclev10015131m.g' => 'ccl', 'Ciclev10015580m.g' => 'ccl', 'Ciclev10028359m.g' => 'ccl', 'Ciclev10028573m.g' => 'ccl', 'CiPaw.03G159300' => 'cil', 'CiPaw.04G115100' => 'cil', 'CiPaw.09G092800' => 'cil', 'CiPaw.10G071800' => 'cil', 'CiPaw.13G105800' => 'cil', 'CiPaw.13G141000' => 'cil', 'CiPaw.14G103400' => 'cil', 'ClCG01G012700' => 'cla', 'ClCG01G012720' => 'cla', 'ClCG01G021920' => 'cla', 'ClCG02G008870' => 'cla', 'ClCG02G020840' => 'cla', 'ClCG02G021930' => 'cla', 'COL.COLO4_19302' => 'col', 'COL.COLO4_25262' => 'col', 'COL.COLO4_31788' => 'col', 'Cpa.g.c34684' => 'cpa', 'Cpa.g.c36520.1' => 'cpa', 'Cpa.g.c45626' => 'cpa', 'Cpa.g.sc121.17' => 'cpa', 'Cpa.g.sc13.22' => 'cpa', 'Cpa.g.sc87.88' => 'cpa', 'Cre06.g261800' => 'cre', 'CsaV3_1G014500' => 'csa', 'CsaV3_1G014510' => 'csa', 'CsaV3_2G034880' => 'csa', 'CsaV3_6G014760' => 'csa', 'CsaV3_6G021500' => 'csa', 'CsaV3_6G048980' => 'csa', 'CSS0002511' => 'camsi', 'CSS0007556' => 'camsi', 'CSS0008532' => 'camsi', 'CSS0009709' => 'camsi', 'CSS0010486' => 'camsi', 'CSS0016768' => 'camsi', 'CSS0023512' => 'camsi', 'CSS0025341' => 'camsi', 'CSS0027999' => 'camsi', 'CSS0028944' => 'camsi', 'CSS0032292' => 'camsi', 'CSS0032464' => 'camsi', 'CSS0037153' => 'camsi', 'CSS0039256' => 'camsi', 'CSS0048392' => 'camsi', 'CSS0050458' => 'camsi', 'DCAR_004224' => 'dca', 'DCAR_006147' => 'dca', 'DCAR_006465' => 'dca', 'DCAR_008159' => 'dca', 'DCAR_012164' => 'dca', 'DCAR_019764' => 'dca', 'Dinv05418' => 'din', 'Dinv10839' => 'din', 'Dinv12521' => 'din', 'Dinv13900' => 'din', 'Dinv29426' => 'din', 'Duzib150G0263' => 'dzi', 'Duzib168G1178' => 'dzi', 'Duzib168G1924' => 'dzi', 'Duzib170G0299' => 'dzi', 'Duzib170G0813' => 'dzi', 'Duzib235G1128' => 'dzi', 'Duzib248G1060' => 'dzi', 'ECA232G1910' => 'eca', 'ECA233G4621' => 'eca', 'ECA238G1216' => 'eca', 'ECA238G1784' => 'eca', 'ECA248G1242' => 'eca', 'EL10Ac8g20071' => 'bvu', 'EL10Ac9g21086' => 'bvu', 'EL10Ac9g22407' => 'bvu', 'EL10Ac9g22412' => 'bvu', 'Eucgr.A01119' => 'egr', 'Eucgr.E04043' => 'egr', 'Eucgr.J00428' => 'egr', 'Eucgr.J00958' => 'egr', 'FAN11G3091' => 'fan', 'FAN11G3651' => 'fan', 'FAN16G2566' => 'fan', 'FAN21G3155' => 'fan', 'FAN21G3400' => 'fan', 'FAN21G3543' => 'fan', 'FAN25G0234' => 'fan', 'FAN25G1422' => 'fan', 'FAN25G3392' => 'fan', 'FvH4_3g01940' => 'fve', 'FvH4_3g29870' => 'fve', 'FvH4_3g33680' => 'fve', 'Glyma.09G004200' => 'gma', 'Glyma.11G151288' => 'gma', 'Glyma.11G189100' => 'gma', 'Glyma.12G072500' => 'gma', 'Glyma.12G085500' => 'gma', 'Glyma.12G181800' => 'gma', 'Glyma.12G193000' => 'gma', 'Glyma.13G309300' => 'gma', 'Glyma.13G319000' => 'gma', 'Glyma.17G012600' => 'gma', 'Gohir.A06G148600' => 'ghi', 'Gohir.A07G115800' => 'ghi', 'Gohir.A08G003600' => 'ghi', 'Gohir.A09G093300' => 'ghi', 'Gohir.A09G105400' => 'ghi', 'Gohir.A09G105500' => 'ghi', 'Gohir.D06G154600' => 'ghi', 'Gohir.D07G120200' => 'ghi', 'Gohir.D08G013900' => 'ghi', 'Gohir.D09G093100' => 'ghi', 'Gohir.D09G102200' => 'ghi', 'Gohir.D09G102300' => 'ghi', 'Gorai.001G129400' => 'gra', 'Gorai.004G008200' => 'gra', 'Gorai.006G109800' => 'gra', 'Gorai.006G119500' => 'gra', 'Gorai.006G121300' => 'gra', 'Gorai.010G180700' => 'gra', 'GSVIVG01012716001' => 'vvi', 'GSVIVG01025118001' => 'vvi', 'GSVIVG01030439001' => 'vvi', 'GSVIVG01031397001' => 'vvi', 'HanXRQChr01g0004201' => 'han', 'HanXRQChr02g0054941' => 'han', 'HanXRQChr05g0141811' => 'han', 'HanXRQChr07g0197751' => 'han', 'HanXRQChr11g0346691' => 'han', 'HanXRQChr13g0396971' => 'han', 'HanXRQChr14g0432951' => 'han', 'HanXRQChr14g0452001' => 'han', 'HanXRQChr15g0496681' => 'han', 'HanXRQChr17g0557491' => 'han', 'HanXRQChr17g0557501' => 'han', 'Haze_06809' => 'cav', 'Haze_12852' => 'cav', 'Haze_15850' => 'cav', 'Haze_23446' => 'cav', 'Haze_23942' => 'cav', 'Haze_23943' => 'cav', 'Hma1.2p1_0091F.1_g046450' => 'hma', 'Hma1.2p1_0128F.1_g059910' => 'hma', 'Hma1.2p1_0249F.1_g102260' => 'hma', 'Hma1.2p1_0453F.1_g156190' => 'hma', 'Hma1.2p1_0695F.1_g204380' => 'hma', 'Hma1.2p1_0749F.1_g212650' => 'hma', 'Hma1.2p1_2156F.1_g315420' => 'hma', 'Hma1.2p1_2686F.1_g326940' => 'hma', 'HPP92_006428' => 'vpl', 'HPP92_012069' => 'vpl', 'HPP92_014129' => 'vpl', 'HPP92_014133' => 'vpl', 'HPP92_017315' => 'vpl', 'HPP92_026445' => 'vpl', 'HPP92_026446' => 'vpl', 'Hund00774' => 'sun', 'Hund07682' => 'sun', 'Hund21413' => 'sun', 'Hund23462' => 'sun', 'Hund23463' => 'sun', 'Lalb_Chr03g0027911' => 'lal', 'Lalb_Chr13g0304271' => 'lal', 'Lalb_Chr19g0137471' => 'lal', 'Lalb_Chr22g0350651' => 'lal', 'Lalb_Chr24g0395151' => 'lal', 'Lj1A1231T40' => 'lonja', 'Lj1A221T48' => 'lonja', 'Lj1C924T12' => 'lonja', 'Lj2C993G6' => 'lonja', 'Lj3g0005790' => 'lja', 'Lj3g0015432' => 'lja', 'Lj3g0017722' => 'lja', 'Lj3g0018497' => 'lja', 'Lj4g0025071' => 'lja', 'Lsat_1_v5_gn_1_129680' => 'lsa', 'Lsat_1_v5_gn_2_25321' => 'lsa', 'Lsat_1_v5_gn_2_95461' => 'lsa', 'Lsat_1_v5_gn_4_159620' => 'lsa', 'Lsat_1_v5_gn_6_41301' => 'lsa', 'Lsat_1_v5_gn_6_74660' => 'lsa', 'Lsat_1_v5_gn_7_11520' => 'lsa', 'Lsat_1_v5_gn_9_67680' => 'lsa', 'Manes.04G008300' => 'mes', 'Manes.04G008400' => 'mes', 'Manes.04G026500' => 'mes', 'Manes.10G135300' => 'mes', 'Manes.11G157300' => 'mes', 'Manes.12G074000' => 'mes', 'Manes.16G006200' => 'mes', 'Manes.17G026400' => 'mes', 'Mapoly0024s0086' => 'mpo', 'Mapoly0024s0087' => 'mpo', 'Mapoly0071s0057' => 'mpo', 'Mapoly0204s0012' => 'mpo', 'MBI04_g37681_MAGBIO' => 'mbi', 'MBI05_g17779_MAGBIO' => 'mbi', 'MBI12_g31184_MAGBIO' => 'mbi', 'MBI17_g11083_MAGBIO' => 'mbi', 'MBI18_g03883_MAGBIO' => 'mbi', 'MBI18_g28940_MAGBIO' => 'mbi', 'MCO01G690' => 'mco', 'MD03G1109900' => 'mdo', 'MD03G1134800' => 'mdo', 'MD05G1348000' => 'mdo', 'MD10G1322400' => 'mdo', 'MD11G1123300' => 'mdo', 'MD11G1157600' => 'mdo', 'Medtr2g084875' => 'mtr', 'Medtr2g088130' => 'mtr', 'Medtr4g055310' => 'mtr', 'Medtr4g061070' => 'mtr', 'Medtr4g132250' => 'mtr', 'MELO3C004795.2' => 'cme', 'MELO3C004797.2' => 'cme', 'MELO3C007396.2' => 'cme', 'MELO3C019277.2' => 'cme', 'MELO3C021449.2' => 'cme', 'MELO3C025736.2' => 'cme', 'Migut.D02175' => 'egut', 'Migut.H01573' => 'egut', 'Migut.M01327' => 'egut', 'Migut.N02513' => 'egut', 'MSTRG.14638' => 'ama', 'MSTRG.18632' => 'ama', 'MSTRG.7203' => 'ama', 'Nitab4.5_0000533g0140' => 'nta', 'Nitab4.5_0000888g0150' => 'nta', 'Nitab4.5_0001453g0040' => 'nta', 'Nitab4.5_0002827g0090' => 'nta', 'Nitab4.5_0003082g0040' => 'nta', 'Nitab4.5_0007799g0040' => 'nta', 'Nitab4.5_0008983g0010' => 'nta', 'Nitab4.5_0009017g0020' => 'nta', 'Nn1g02132' => 'nnu', 'Nn1g03492' => 'nnu', 'Nn1g03493' => 'nnu', 'Nn1g03494' => 'nnu', 'Nn1g07164' => 'nnu', 'Nn1g07291' => 'nnu', 'Nn2g10655' => 'nnu', 'Nn2g11652' => 'nnu', 'Nn2g14008' => 'nnu', 'Nn3g17476' => 'nnu', 'Nn3g17477' => 'nnu', 'Nn4g22370' => 'nnu', 'Nn4g25255' => 'nnu', 'Nn5g27755' => 'nnu', 'Nn6g34260' => 'nnu', 'Nn6g35041' => 'nnu', 'Oeu005924.1' => 'oeu', 'Oeu008383.1' => 'oeu', 'Oeu014928.1' => 'oeu', 'Oeu019889.1' => 'oeu', 'Oeu022271.1' => 'oeu', 'Oeu025271.1' => 'oeu', 'Oeu036302.1' => 'oeu', 'Oeu044100.1' => 'oeu', 'Os01g0528300' => 'osa', 'Os03g0286200' => 'osa', 'Os04g0406600' => 'osa', 'Os07g0512000' => 'osa', 'Os07g0694600' => 'osa', 'Os08g0411000' => 'osa', 'Os09g0565700' => 'osa', 'Os09g0566050' => 'osa', 'Os10g0523700' => 'osa', 'Peaxi162Scf00002g00514' => 'pax', 'Peaxi162Scf00047g01817' => 'pax', 'Peaxi162Scf00114g00001' => 'pax', 'Peaxi162Scf00147g00613' => 'pax', 'Peaxi162Scf00389g00425' => 'pax', 'PGR042G1139' => 'pgr', 'PGR042G3273' => 'pgr', 'PGR102G2180' => 'pgr', 'PGR119G0234' => 'pgr', 'PGR119G0668' => 'pgr', 'PGSC0003DMG400007122' => 'stu', 'PGSC0003DMG400016478' => 'stu', 'PGSC0003DMG400025374' => 'stu', 'PGSC0003DMG400026536' => 'stu', 'Phvul.003G079600' => 'pvu', 'Phvul.005G115600' => 'pvu', 'Phvul.005G127100' => 'pvu', 'Phvul.006G149500' => 'pvu', 'Phvul.006G149600' => 'pvu', 'Phvul.011G071800' => 'pvu', 'Phvul.011G090400' => 'pvu', 'Potri.004G013400' => 'ptr', 'Potri.004G188100' => 'ptr', 'Potri.008G195500' => 'ptr', 'Potri.009G148800' => 'ptr', 'Potri.011G004700' => 'ptr', 'Pp3c17_22810' => 'ppa', 'Pp3c18_4480' => 'ppa', 'Pp3c19_13030' => 'ppa', 'Pp3c1_33620' => 'ppa', 'Pp3c2_9380' => 'ppa', 'PRCOL_00001023' => 'pco', 'Prupe.3G216300' => 'ppe', 'Prupe.4G019500' => 'ppe', 'Prupe.6G092500' => 'ppe', 'Prupe.6G119200' => 'ppe', 'Psat0s1945g0080' => 'psa', 'Psat0s4167g0040' => 'psa', 'Psat1g185800' => 'psa', 'Psat4g006440' => 'psa', 'Psat4g006480' => 'psa', 'Psat4g168120' => 'psa', 'Psat5g255680' => 'psa', 'Psat5g261760' => 'psa', 'Psat7g222120' => 'psa', 'PSO063G7252' => 'pso', 'PSO170G4778' => 'pso', 'PSO210G2249' => 'pso', 'PSO339G2411' => 'pso', 'PSO339G2457' => 'pso', 'PSO339G2854' => 'pso', 'PSO339G4288' => 'pso', 'PSO339G4615' => 'pso', 'PSO384G2796' => 'pso', 'PSO384G2940' => 'pso', 'PSO384G4227' => 'pso', 'PSO478G1425' => 'pso', 'PSO541G3863' => 'pso', 'PSO675G0507' => 'pso', 'PSO782G0338' => 'pso', 'PSO832G0644' => 'pso', 'QL01p013664' => 'qlo', 'QL01p036598' => 'qlo', 'QL05p072984' => 'qlo', 'QL08p005768' => 'qlo', 'QL08p032743' => 'qlo', 'QL93p0073_0439' => 'qlo', 'QL93p0073_0444' => 'qlo', 'RcHm_v2.0_Chr5g0002851' => 'rch', 'RcHm_v2.0_Chr5g0055201' => 'rch', 'RcHm_v2.0_Chr5g0061191' => 'rch', 'RcHm_v2.0_Chr7g0203231' => 'rch', 'Rhsim01G0208100' => 'rsi', 'Rhsim01G0208200' => 'rsi', 'Rhsim02G0106500' => 'rsi', 'Rhsim03G0107900' => 'rsi', 'Rhsim06G0163400' => 'rsi', 'Rhsim13G0105200' => 'rsi', 'Sabra04G0006300' => 'sbr', 'Sabra04G0127000' => 'sbr', 'Sabra08G0148700' => 'sbr', 'Sabra09G0117400' => 'sbr', 'SalBow1G3326' => 'sbo', 'SalBow3G3228' => 'sbo', 'SalBow6G1634' => 'sbo', 'SalBow6G3603' => 'sbo', 'SalBow6G5266' => 'sbo', 'SalBow7G2265' => 'sbo', 'SalBow8G0850' => 'sbo', 'SalBow8G2592' => 'sbo', 'Sc05g0009240' => 'sci', 'Sc12g0002300' => 'sci', 'Sc21g0000100' => 'sci', 'Sc21g0004720' => 'sci', 'Sed0002949' => 'sed', 'Sed0004114' => 'sed', 'Sed0004306' => 'sed', 'Sed0006172' => 'sed', 'Sed0008413' => 'sed', 'Sed0013809' => 'sed', 'Sed0019556' => 'sed', 'SEGI_03570' => 'sgi', 'SEGI_07859' => 'sgi', 'SEGI_15042' => 'sgi', 'SEGI_16263' => 'sgi', 'SEGI_16552' => 'sgi', 'SEGI_24331' => 'sgi', 'SEGI_27316' => 'sgi', 'SEGI_29521' => 'sgi', 'SEGI_41342' => 'sgi', 'SGA_v2.0_scaffold27G11617' => 'sas', 'SGA_v2.0_scaffold316G48428' => 'sas', 'SGA_v2.0_scaffold49G18261' => 'sas', 'SGA_v2.0_scaffold7G03831' => 'sas', 'SGA_v2.0_scaffold93G28359' => 'sas', 'SHI02210' => 'shi', 'SHI06028' => 'shi', 'SHI06321' => 'shi', 'SMO111G0012' => 'smo', 'SMO228G0080' => 'smo', 'SMO356G0756' => 'smo', 'Solyc02g080620.3' => 'sly', 'Solyc06g074530.1' => 'sly', 'Solyc11g066890.1' => 'sly', 'Solyc11g072520.3' => 'sly', 'Sopen02g025330' => 'spe', 'Sopen06g031000' => 'spe', 'Sopen09g008240' => 'spe', 'Sopen09g025210' => 'spe', 'Sopen11g026600' => 'spe', 'Sopen11g030170' => 'spe', 'Sp1g10420' => 'spa', 'Sp3g06570' => 'spa', 'Sp4g10660' => 'spa', 'Sp5g16460' => 'spa', 'Sp6g22710' => 'spa', 'TAR365G0112' => 'tar', 'TAR369G0717' => 'tar', 'TAR374G0976' => 'tar', 'TAR623G1128' => 'tar', 'TAR626G1937' => 'tar', 'TAR627G0123' => 'tar', 'TAR628G0305' => 'tar', 'TAR636G1176' => 'tar', 'TAR636G2442' => 'tar', 'THA.LOC104800556' => 'tha', 'THA.LOC104809501' => 'tha', 'THA.LOC104815126' => 'tha', 'THA.LOC104815732' => 'tha', 'THA.LOC104823528' => 'tha', 'Thecc.02G365600' => 'tca', 'Thecc.06G222300' => 'tca', 'Thecc.09G261800' => 'tca', 'Thecc.09G291400' => 'tca', 'Thhalv10003028m.g' => 'esa', 'Thhalv10007886m.g' => 'esa', 'Thhalv10016085m.g' => 'esa', 'Thhalv10016681m.g' => 'esa', 'Thhalv10020951m.g' => 'esa', 'TPR.G15598' => 'tpr', 'TPR.G29305' => 'tpr', 'TPR.G32395' => 'tpr', 'TPR.G36998' => 'tpr', 'TPR.G4227' => 'tpr', 'TWI18G1433' => 'twi', 'TWI31G0755' => 'twi', 'TWI38G0912' => 'twi', 'TWI75G1097' => 'twi', 'TWI75G1619' => 'twi', 'TWI79G1336' => 'twi', 'unitig_0.g943' => 'ugi', 'unitig_0.g944' => 'ugi', 'unitig_22.g6646' => 'ugi', 'unitig_37.g12681' => 'ugi', 'unitig_8.g3290' => 'ugi', 'vmacro03278' => 'vma', 'vmacro12197' => 'vma', 'vmacro14478' => 'vma', 'vmacro15787' => 'vma', 'vmacro15789' => 'vma', 'vmacro15790' => 'vma', 'vmacro15806' => 'vma', 'vmacro22907' => 'vma', 'vmacro22908' => 'vma', 'vmacro22909' => 'vma', 'vmacro23108' => 'vma', 'VMungo0540G0540' => 'vmu', 'VMungo0540G2468' => 'vmu', 'VMungo1080G0390' => 'vmu', 'VMungo1080G1165' => 'vmu', 'VMungo1127G0170' => 'vmu', 'VMungo1127G2099' => 'vmu', 'VMungo1215G3013' => 'vmu', 'Zm00001eb013110' => 'zma', 'Zm00001eb084260' => 'zma', 'Zm00001eb096110' => 'zma', 'Zm00001eb217510' => 'zma', 'Zm00001eb322550' => 'zma', 'Zm00001eb390770' => 'zma', 'Zm00001eb397170' => 'zma', 'Zm00001eb404610' => 'zma', 'Zm00001eb421790' => 'zma' ) $gf_id = 'HOM05D000911' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000911' ) $data_identifier = 'HOM05D000911' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 16, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 5, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 6, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 8, 'nnu' => (int) 16, 'oeu' => (int) 8, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 5, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 16, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421790' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000911', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27780' => 'bna', 'A03p35380' => 'bna', 'A04p21160' => 'bna', 'A05p40570' => 'bna', 'A06p26900' => 'bna', 'A08p33230' => 'bna', 'A09p65960' => 'bna', 'A10p18290' => 'bna', 'Aa31LG1G12990' => 'aar', 'Aa31LG1G2980' => 'aar', 'Aa31LG4G14320' => 'aar', 'Aa31LG7G11800' => 'aar', 'Aa31sc36G50' => 'aar', 'Aa31sc36G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3721' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5459' => 'aag', 'Actinidia03028' => 'ach', 'Actinidia03753' => 'ach', 'Actinidia04187' => 'ach', 'Actinidia05509' => 'ach', 'Actinidia24180' => 'ach', 'Actinidia26906' => 'ach', 'Actinidia37097' => 'ach', 'Actinidia38249' => 'ach', 'Ah.01g003470' => 'amhyb', 'Ah.01g004580' => 'amhyb', 'Ah.01g014850' => 'amhyb', 'Ah.01g016830' => 'amhyb', 'Ah.14g088000' => 'amhyb', 'AL1G22980' => 'aly', 'AL3G18990' => 'aly', 'AL4G22440' => 'aly', 'AL4G33180' => 'aly', 'AL5G22920' => 'aly', 'AL6G33660' => 'aly', 'AL8G20720' => 'aly', 'Aqoxy1G00935' => 'aox', 'Aqoxy1G02094' => 'aox', 'Aqoxy2G01239' => 'aox', 'Aqoxy4G01870' => 'aox', 'Aqoxy7G00450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.36ZVTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71EM27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5D6C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH3WRE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3NCM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RIM768' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YB5YRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z36GDV' => 'arhy', 'AT1G08250' => 'ath', 'AT1G11790' => 'ath', 'AT2G27820' => 'ath', 'AT3G07630' => 'ath', 'AT3G44720' => 'ath', 'AT5G22630' => 'ath', 'ATR0693G304' => 'atr', 'ATR0794G109' => 'atr', 'ATR0820G120' => 'atr', 'ATR1159G064' => 'atr', 'Atru.chr10.2239' => 'acertr', 'Atru.chr3.3371' => 'acertr', 'Atru.chr6.3202' => 'acertr', 'AUR62006499' => 'cqu', 'AUR62012718' => 'cqu', 'AUR62021938' => 'cqu', 'AUR62023932' => 'cqu', 'AUR62025034' => 'cqu', 'AUR62025035' => 'cqu', 'AUR62038307' => 'cqu', 'AUR62043466' => 'cqu', 'BcaB02g10748' => 'bca', 'BcaB03g13231' => 'bca', 'BcaB03g14689' => 'bca', 'BcaB05g22716' => 'bca', 'BcaB06g28172' => 'bca', 'BcaB08g36413' => 'bca', 'BcaC01g02186' => 'bca', 'BcaC01g04272' => 'bca', 'BcaC02g08080' => 'bca', 'BcaC02g08227' => 'bca', 'BcaC03g13901' => 'bca', 'BcaC04g19593' => 'bca', 'BcaC04g20874' => 'bca', 'BcaC05g29557' => 'bca', 'BcaC06g35505' => 'bca', 'BcaC07g41954' => 'bca', 'BcaC07g41955' => 'bca', 'BcaC07g41956' => 'bca', 'BcaC07g42519' => 'bca', 'BcaC07g42520' => 'bca', 'BcaC07g42523' => 'bca', 'BcaC07g42524' => 'bca', 'BcaC07g42525' => 'bca', 'BcaC08g47480' => 'bca', 'BcaC08g47481' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00530' => 'bna', 'BolC2t07178H' => 'bol', 'BolC3t16567H' => 'bol', 'BolC4t27234H' => 'bol', 'BolC5t29728H' => 'bol', 'BolC5t34622H' => 'bol', 'BolC6t40321H' => 'bol', 'BolC7t42028H' => 'bol', 'BolC8t49125H' => 'bol', 'BolC8t52538H' => 'bol', 'BolC8t52539H' => 'bol', 'BolC9t56681H' => 'bol', 'BolC9t58266H' => 'bol', 'BolSC21t60294H' => 'bol', 'BraA02t05670Z' => 'bra', 'BraA03t12716Z' => 'bra', 'BraA04t17685Z' => 'bra', 'BraA05t22788Z' => 'bra', 'BraA06t24032Z' => 'bra', 'BraA06t25625Z' => 'bra', 'BraA07t27930Z' => 'bra', 'BraA08t35242Z' => 'bra', 'BraA09t38609Z' => 'bra', 'BraA10t43905Z' => 'bra', 'C02p11060' => 'bna', 'C03p42990' => 'bna', 'C03p67310' => 'bna', 'C04p56990' => 'bna', 'C04p58660' => 'bna', 'C05p09890' => 'bna', 'C05p59680' => 'bna', 'C06p19830' => 'bna', 'C06p53040' => 'bna', 'C07p15230' => 'bna', 'C08p50070' => 'bna', 'C08p50090' => 'bna', 'C09p38330' => 'bna', 'C09p53940' => 'bna', 'CAN.G1014.1' => 'can', 'CAN.G644.30' => 'can', 'CAN.G84.47' => 'can', 'CAN.G919.8' => 'can', 'CANSAT54G0113' => 'cansat', 'CANSAT54G1286' => 'cansat', 'CANSAT64G1020' => 'cansat', 'CARHR008080' => 'chi', 'CARHR008090' => 'chi', 'CARHR012130' => 'chi', 'CARHR038390' => 'chi', 'CARHR082330' => 'chi', 'CARHR120520' => 'chi', 'CARHR151470' => 'chi', 'CARHR190950' => 'chi', 'Carub.0001s0760' => 'cru', 'Carub.0001s1146' => 'cru', 'Carub.0003s0721' => 'cru', 'Carub.0004s0858' => 'cru', 'Carub.0005s1040' => 'cru', 'Carub.0006s2035' => 'cru', 'Carub.0015s0005' => 'cru', 'Ca_01607_v3' => 'car', 'Ca_01677_v3' => 'car', 'Ca_06087_v3' => 'car', 'Ca_19238_v3' => 'car', 'Ca_19373_v3' => 'car', 'Ca_21079_v3' => 'car', 'CBR_g54016' => 'cbr', 'CBR_g54018' => 'cbr', 'CBR_g54020' => 'cbr', 'Cc01_g09780' => 'ccan', 'Cc01_g11680' => 'ccan', 'Cc02_g15610' => 'ccan', 'Cc05_g04350' => 'ccan', 'Cc09_g01580' => 'ccan', 'CDE01G0795' => 'cde', 'CDE02G2024' => 'cde', 'CDE02G2260' => 'cde', 'CDE02G4561' => 'cde', 'CDE05G2733' => 'cde', 'CDE05G3422' => 'cde', 'CDE06G2003' => 'cde', 'CDE08G0576' => 'cde', 'CDE09G0048' => 'cde', 'CDE11G0805' => 'cde', 'Cfa003644' => 'cfa', 'Cfa006290' => 'cfa', 'Cfa010080' => 'cfa', 'Cfa011376' => 'cfa', 'Cfa011576' => 'cfa', 'Cfa011577' => 'cfa', 'Cfa014389' => 'cfa', 'Ciclev10006044m.g' => 'ccl', 'Ciclev10006954m.g' => 'ccl', 'Ciclev10015131m.g' => 'ccl', 'Ciclev10015580m.g' => 'ccl', 'Ciclev10028359m.g' => 'ccl', 'Ciclev10028573m.g' => 'ccl', 'CiPaw.03G159300' => 'cil', 'CiPaw.04G115100' => 'cil', 'CiPaw.09G092800' => 'cil', 'CiPaw.10G071800' => 'cil', 'CiPaw.13G105800' => 'cil', 'CiPaw.13G141000' => 'cil', 'CiPaw.14G103400' => 'cil', 'ClCG01G012700' => 'cla', 'ClCG01G012720' => 'cla', 'ClCG01G021920' => 'cla', 'ClCG02G008870' => 'cla', 'ClCG02G020840' => 'cla', 'ClCG02G021930' => 'cla', 'COL.COLO4_19302' => 'col', 'COL.COLO4_25262' => 'col', 'COL.COLO4_31788' => 'col', 'Cpa.g.c34684' => 'cpa', 'Cpa.g.c36520.1' => 'cpa', 'Cpa.g.c45626' => 'cpa', 'Cpa.g.sc121.17' => 'cpa', 'Cpa.g.sc13.22' => 'cpa', 'Cpa.g.sc87.88' => 'cpa', 'Cre06.g261800' => 'cre', 'CsaV3_1G014500' => 'csa', 'CsaV3_1G014510' => 'csa', 'CsaV3_2G034880' => 'csa', 'CsaV3_6G014760' => 'csa', 'CsaV3_6G021500' => 'csa', 'CsaV3_6G048980' => 'csa', 'CSS0002511' => 'camsi', 'CSS0007556' => 'camsi', 'CSS0008532' => 'camsi', 'CSS0009709' => 'camsi', 'CSS0010486' => 'camsi', 'CSS0016768' => 'camsi', 'CSS0023512' => 'camsi', 'CSS0025341' => 'camsi', 'CSS0027999' => 'camsi', 'CSS0028944' => 'camsi', 'CSS0032292' => 'camsi', 'CSS0032464' => 'camsi', 'CSS0037153' => 'camsi', 'CSS0039256' => 'camsi', 'CSS0048392' => 'camsi', 'CSS0050458' => 'camsi', 'DCAR_004224' => 'dca', 'DCAR_006147' => 'dca', 'DCAR_006465' => 'dca', 'DCAR_008159' => 'dca', 'DCAR_012164' => 'dca', 'DCAR_019764' => 'dca', 'Dinv05418' => 'din', 'Dinv10839' => 'din', 'Dinv12521' => 'din', 'Dinv13900' => 'din', 'Dinv29426' => 'din', 'Duzib150G0263' => 'dzi', 'Duzib168G1178' => 'dzi', 'Duzib168G1924' => 'dzi', 'Duzib170G0299' => 'dzi', 'Duzib170G0813' => 'dzi', 'Duzib235G1128' => 'dzi', 'Duzib248G1060' => 'dzi', 'ECA232G1910' => 'eca', 'ECA233G4621' => 'eca', 'ECA238G1216' => 'eca', 'ECA238G1784' => 'eca', 'ECA248G1242' => 'eca', 'EL10Ac8g20071' => 'bvu', 'EL10Ac9g21086' => 'bvu', 'EL10Ac9g22407' => 'bvu', 'EL10Ac9g22412' => 'bvu', 'Eucgr.A01119' => 'egr', 'Eucgr.E04043' => 'egr', 'Eucgr.J00428' => 'egr', 'Eucgr.J00958' => 'egr', 'FAN11G3091' => 'fan', 'FAN11G3651' => 'fan', 'FAN16G2566' => 'fan', 'FAN21G3155' => 'fan', 'FAN21G3400' => 'fan', 'FAN21G3543' => 'fan', 'FAN25G0234' => 'fan', 'FAN25G1422' => 'fan', 'FAN25G3392' => 'fan', 'FvH4_3g01940' => 'fve', 'FvH4_3g29870' => 'fve', 'FvH4_3g33680' => 'fve', 'Glyma.09G004200' => 'gma', 'Glyma.11G151288' => 'gma', 'Glyma.11G189100' => 'gma', 'Glyma.12G072500' => 'gma', 'Glyma.12G085500' => 'gma', 'Glyma.12G181800' => 'gma', 'Glyma.12G193000' => 'gma', 'Glyma.13G309300' => 'gma', 'Glyma.13G319000' => 'gma', 'Glyma.17G012600' => 'gma', 'Gohir.A06G148600' => 'ghi', 'Gohir.A07G115800' => 'ghi', 'Gohir.A08G003600' => 'ghi', 'Gohir.A09G093300' => 'ghi', 'Gohir.A09G105400' => 'ghi', 'Gohir.A09G105500' => 'ghi', 'Gohir.D06G154600' => 'ghi', 'Gohir.D07G120200' => 'ghi', 'Gohir.D08G013900' => 'ghi', 'Gohir.D09G093100' => 'ghi', 'Gohir.D09G102200' => 'ghi', 'Gohir.D09G102300' => 'ghi', 'Gorai.001G129400' => 'gra', 'Gorai.004G008200' => 'gra', 'Gorai.006G109800' => 'gra', 'Gorai.006G119500' => 'gra', 'Gorai.006G121300' => 'gra', 'Gorai.010G180700' => 'gra', 'GSVIVG01012716001' => 'vvi', 'GSVIVG01025118001' => 'vvi', 'GSVIVG01030439001' => 'vvi', 'GSVIVG01031397001' => 'vvi', 'HanXRQChr01g0004201' => 'han', 'HanXRQChr02g0054941' => 'han', 'HanXRQChr05g0141811' => 'han', 'HanXRQChr07g0197751' => 'han', 'HanXRQChr11g0346691' => 'han', 'HanXRQChr13g0396971' => 'han', 'HanXRQChr14g0432951' => 'han', 'HanXRQChr14g0452001' => 'han', 'HanXRQChr15g0496681' => 'han', 'HanXRQChr17g0557491' => 'han', 'HanXRQChr17g0557501' => 'han', 'Haze_06809' => 'cav', 'Haze_12852' => 'cav', 'Haze_15850' => 'cav', 'Haze_23446' => 'cav', 'Haze_23942' => 'cav', 'Haze_23943' => 'cav', 'Hma1.2p1_0091F.1_g046450' => 'hma', 'Hma1.2p1_0128F.1_g059910' => 'hma', 'Hma1.2p1_0249F.1_g102260' => 'hma', 'Hma1.2p1_0453F.1_g156190' => 'hma', 'Hma1.2p1_0695F.1_g204380' => 'hma', 'Hma1.2p1_0749F.1_g212650' => 'hma', 'Hma1.2p1_2156F.1_g315420' => 'hma', 'Hma1.2p1_2686F.1_g326940' => 'hma', 'HPP92_006428' => 'vpl', 'HPP92_012069' => 'vpl', 'HPP92_014129' => 'vpl', 'HPP92_014133' => 'vpl', 'HPP92_017315' => 'vpl', 'HPP92_026445' => 'vpl', 'HPP92_026446' => 'vpl', 'Hund00774' => 'sun', 'Hund07682' => 'sun', 'Hund21413' => 'sun', 'Hund23462' => 'sun', 'Hund23463' => 'sun', 'Lalb_Chr03g0027911' => 'lal', 'Lalb_Chr13g0304271' => 'lal', 'Lalb_Chr19g0137471' => 'lal', 'Lalb_Chr22g0350651' => 'lal', 'Lalb_Chr24g0395151' => 'lal', 'Lj1A1231T40' => 'lonja', 'Lj1A221T48' => 'lonja', 'Lj1C924T12' => 'lonja', 'Lj2C993G6' => 'lonja', 'Lj3g0005790' => 'lja', 'Lj3g0015432' => 'lja', 'Lj3g0017722' => 'lja', 'Lj3g0018497' => 'lja', 'Lj4g0025071' => 'lja', 'Lsat_1_v5_gn_1_129680' => 'lsa', 'Lsat_1_v5_gn_2_25321' => 'lsa', 'Lsat_1_v5_gn_2_95461' => 'lsa', 'Lsat_1_v5_gn_4_159620' => 'lsa', 'Lsat_1_v5_gn_6_41301' => 'lsa', 'Lsat_1_v5_gn_6_74660' => 'lsa', 'Lsat_1_v5_gn_7_11520' => 'lsa', 'Lsat_1_v5_gn_9_67680' => 'lsa', 'Manes.04G008300' => 'mes', 'Manes.04G008400' => 'mes', 'Manes.04G026500' => 'mes', 'Manes.10G135300' => 'mes', 'Manes.11G157300' => 'mes', 'Manes.12G074000' => 'mes', 'Manes.16G006200' => 'mes', 'Manes.17G026400' => 'mes', 'Mapoly0024s0086' => 'mpo', 'Mapoly0024s0087' => 'mpo', 'Mapoly0071s0057' => 'mpo', 'Mapoly0204s0012' => 'mpo', 'MBI04_g37681_MAGBIO' => 'mbi', 'MBI05_g17779_MAGBIO' => 'mbi', 'MBI12_g31184_MAGBIO' => 'mbi', 'MBI17_g11083_MAGBIO' => 'mbi', 'MBI18_g03883_MAGBIO' => 'mbi', 'MBI18_g28940_MAGBIO' => 'mbi', 'MCO01G690' => 'mco', 'MD03G1109900' => 'mdo', 'MD03G1134800' => 'mdo', 'MD05G1348000' => 'mdo', 'MD10G1322400' => 'mdo', 'MD11G1123300' => 'mdo', 'MD11G1157600' => 'mdo', 'Medtr2g084875' => 'mtr', 'Medtr2g088130' => 'mtr', 'Medtr4g055310' => 'mtr', 'Medtr4g061070' => 'mtr', 'Medtr4g132250' => 'mtr', 'MELO3C004795.2' => 'cme', 'MELO3C004797.2' => 'cme', 'MELO3C007396.2' => 'cme', 'MELO3C019277.2' => 'cme', 'MELO3C021449.2' => 'cme', 'MELO3C025736.2' => 'cme', 'Migut.D02175' => 'egut', 'Migut.H01573' => 'egut', 'Migut.M01327' => 'egut', 'Migut.N02513' => 'egut', 'MSTRG.14638' => 'ama', 'MSTRG.18632' => 'ama', 'MSTRG.7203' => 'ama', 'Nitab4.5_0000533g0140' => 'nta', 'Nitab4.5_0000888g0150' => 'nta', 'Nitab4.5_0001453g0040' => 'nta', 'Nitab4.5_0002827g0090' => 'nta', 'Nitab4.5_0003082g0040' => 'nta', 'Nitab4.5_0007799g0040' => 'nta', 'Nitab4.5_0008983g0010' => 'nta', 'Nitab4.5_0009017g0020' => 'nta', 'Nn1g02132' => 'nnu', 'Nn1g03492' => 'nnu', 'Nn1g03493' => 'nnu', 'Nn1g03494' => 'nnu', 'Nn1g07164' => 'nnu', 'Nn1g07291' => 'nnu', 'Nn2g10655' => 'nnu', 'Nn2g11652' => 'nnu', 'Nn2g14008' => 'nnu', 'Nn3g17476' => 'nnu', 'Nn3g17477' => 'nnu', 'Nn4g22370' => 'nnu', 'Nn4g25255' => 'nnu', 'Nn5g27755' => 'nnu', 'Nn6g34260' => 'nnu', 'Nn6g35041' => 'nnu', 'Oeu005924.1' => 'oeu', 'Oeu008383.1' => 'oeu', 'Oeu014928.1' => 'oeu', 'Oeu019889.1' => 'oeu', 'Oeu022271.1' => 'oeu', 'Oeu025271.1' => 'oeu', 'Oeu036302.1' => 'oeu', 'Oeu044100.1' => 'oeu', 'Os01g0528300' => 'osa', 'Os03g0286200' => 'osa', 'Os04g0406600' => 'osa', 'Os07g0512000' => 'osa', 'Os07g0694600' => 'osa', 'Os08g0411000' => 'osa', 'Os09g0565700' => 'osa', 'Os09g0566050' => 'osa', 'Os10g0523700' => 'osa', 'Peaxi162Scf00002g00514' => 'pax', 'Peaxi162Scf00047g01817' => 'pax', 'Peaxi162Scf00114g00001' => 'pax', 'Peaxi162Scf00147g00613' => 'pax', 'Peaxi162Scf00389g00425' => 'pax', 'PGR042G1139' => 'pgr', 'PGR042G3273' => 'pgr', 'PGR102G2180' => 'pgr', 'PGR119G0234' => 'pgr', 'PGR119G0668' => 'pgr', 'PGSC0003DMG400007122' => 'stu', 'PGSC0003DMG400016478' => 'stu', 'PGSC0003DMG400025374' => 'stu', 'PGSC0003DMG400026536' => 'stu', 'Phvul.003G079600' => 'pvu', 'Phvul.005G115600' => 'pvu', 'Phvul.005G127100' => 'pvu', 'Phvul.006G149500' => 'pvu', 'Phvul.006G149600' => 'pvu', 'Phvul.011G071800' => 'pvu', 'Phvul.011G090400' => 'pvu', 'Potri.004G013400' => 'ptr', 'Potri.004G188100' => 'ptr', 'Potri.008G195500' => 'ptr', 'Potri.009G148800' => 'ptr', 'Potri.011G004700' => 'ptr', 'Pp3c17_22810' => 'ppa', 'Pp3c18_4480' => 'ppa', 'Pp3c19_13030' => 'ppa', 'Pp3c1_33620' => 'ppa', 'Pp3c2_9380' => 'ppa', 'PRCOL_00001023' => 'pco', 'Prupe.3G216300' => 'ppe', 'Prupe.4G019500' => 'ppe', 'Prupe.6G092500' => 'ppe', 'Prupe.6G119200' => 'ppe', 'Psat0s1945g0080' => 'psa', 'Psat0s4167g0040' => 'psa', 'Psat1g185800' => 'psa', 'Psat4g006440' => 'psa', 'Psat4g006480' => 'psa', 'Psat4g168120' => 'psa', 'Psat5g255680' => 'psa', 'Psat5g261760' => 'psa', 'Psat7g222120' => 'psa', 'PSO063G7252' => 'pso', 'PSO170G4778' => 'pso', 'PSO210G2249' => 'pso', 'PSO339G2411' => 'pso', 'PSO339G2457' => 'pso', 'PSO339G2854' => 'pso', 'PSO339G4288' => 'pso', 'PSO339G4615' => 'pso', 'PSO384G2796' => 'pso', 'PSO384G2940' => 'pso', 'PSO384G4227' => 'pso', 'PSO478G1425' => 'pso', 'PSO541G3863' => 'pso', 'PSO675G0507' => 'pso', 'PSO782G0338' => 'pso', 'PSO832G0644' => 'pso', 'QL01p013664' => 'qlo', 'QL01p036598' => 'qlo', 'QL05p072984' => 'qlo', 'QL08p005768' => 'qlo', 'QL08p032743' => 'qlo', 'QL93p0073_0439' => 'qlo', 'QL93p0073_0444' => 'qlo', 'RcHm_v2.0_Chr5g0002851' => 'rch', 'RcHm_v2.0_Chr5g0055201' => 'rch', 'RcHm_v2.0_Chr5g0061191' => 'rch', 'RcHm_v2.0_Chr7g0203231' => 'rch', 'Rhsim01G0208100' => 'rsi', 'Rhsim01G0208200' => 'rsi', 'Rhsim02G0106500' => 'rsi', 'Rhsim03G0107900' => 'rsi', 'Rhsim06G0163400' => 'rsi', 'Rhsim13G0105200' => 'rsi', 'Sabra04G0006300' => 'sbr', 'Sabra04G0127000' => 'sbr', 'Sabra08G0148700' => 'sbr', 'Sabra09G0117400' => 'sbr', 'SalBow1G3326' => 'sbo', 'SalBow3G3228' => 'sbo', 'SalBow6G1634' => 'sbo', 'SalBow6G3603' => 'sbo', 'SalBow6G5266' => 'sbo', 'SalBow7G2265' => 'sbo', 'SalBow8G0850' => 'sbo', 'SalBow8G2592' => 'sbo', 'Sc05g0009240' => 'sci', 'Sc12g0002300' => 'sci', 'Sc21g0000100' => 'sci', 'Sc21g0004720' => 'sci', 'Sed0002949' => 'sed', 'Sed0004114' => 'sed', 'Sed0004306' => 'sed', 'Sed0006172' => 'sed', 'Sed0008413' => 'sed', 'Sed0013809' => 'sed', 'Sed0019556' => 'sed', 'SEGI_03570' => 'sgi', 'SEGI_07859' => 'sgi', 'SEGI_15042' => 'sgi', 'SEGI_16263' => 'sgi', 'SEGI_16552' => 'sgi', 'SEGI_24331' => 'sgi', 'SEGI_27316' => 'sgi', 'SEGI_29521' => 'sgi', 'SEGI_41342' => 'sgi', 'SGA_v2.0_scaffold27G11617' => 'sas', 'SGA_v2.0_scaffold316G48428' => 'sas', 'SGA_v2.0_scaffold49G18261' => 'sas', 'SGA_v2.0_scaffold7G03831' => 'sas', 'SGA_v2.0_scaffold93G28359' => 'sas', 'SHI02210' => 'shi', 'SHI06028' => 'shi', 'SHI06321' => 'shi', 'SMO111G0012' => 'smo', 'SMO228G0080' => 'smo', 'SMO356G0756' => 'smo', 'Solyc02g080620.3' => 'sly', 'Solyc06g074530.1' => 'sly', 'Solyc11g066890.1' => 'sly', 'Solyc11g072520.3' => 'sly', 'Sopen02g025330' => 'spe', 'Sopen06g031000' => 'spe', 'Sopen09g008240' => 'spe', 'Sopen09g025210' => 'spe', 'Sopen11g026600' => 'spe', 'Sopen11g030170' => 'spe', 'Sp1g10420' => 'spa', 'Sp3g06570' => 'spa', 'Sp4g10660' => 'spa', 'Sp5g16460' => 'spa', 'Sp6g22710' => 'spa', 'TAR365G0112' => 'tar', 'TAR369G0717' => 'tar', 'TAR374G0976' => 'tar', 'TAR623G1128' => 'tar', 'TAR626G1937' => 'tar', 'TAR627G0123' => 'tar', 'TAR628G0305' => 'tar', 'TAR636G1176' => 'tar', 'TAR636G2442' => 'tar', 'THA.LOC104800556' => 'tha', 'THA.LOC104809501' => 'tha', 'THA.LOC104815126' => 'tha', 'THA.LOC104815732' => 'tha', 'THA.LOC104823528' => 'tha', 'Thecc.02G365600' => 'tca', 'Thecc.06G222300' => 'tca', 'Thecc.09G261800' => 'tca', 'Thecc.09G291400' => 'tca', 'Thhalv10003028m.g' => 'esa', 'Thhalv10007886m.g' => 'esa', 'Thhalv10016085m.g' => 'esa', 'Thhalv10016681m.g' => 'esa', 'Thhalv10020951m.g' => 'esa', 'TPR.G15598' => 'tpr', 'TPR.G29305' => 'tpr', 'TPR.G32395' => 'tpr', 'TPR.G36998' => 'tpr', 'TPR.G4227' => 'tpr', 'TWI18G1433' => 'twi', 'TWI31G0755' => 'twi', 'TWI38G0912' => 'twi', 'TWI75G1097' => 'twi', 'TWI75G1619' => 'twi', 'TWI79G1336' => 'twi', 'unitig_0.g943' => 'ugi', 'unitig_0.g944' => 'ugi', 'unitig_22.g6646' => 'ugi', 'unitig_37.g12681' => 'ugi', 'unitig_8.g3290' => 'ugi', 'vmacro03278' => 'vma', 'vmacro12197' => 'vma', 'vmacro14478' => 'vma', 'vmacro15787' => 'vma', 'vmacro15789' => 'vma', 'vmacro15790' => 'vma', 'vmacro15806' => 'vma', 'vmacro22907' => 'vma', 'vmacro22908' => 'vma', 'vmacro22909' => 'vma', 'vmacro23108' => 'vma', 'VMungo0540G0540' => 'vmu', 'VMungo0540G2468' => 'vmu', 'VMungo1080G0390' => 'vmu', 'VMungo1080G1165' => 'vmu', 'VMungo1127G0170' => 'vmu', 'VMungo1127G2099' => 'vmu', 'VMungo1215G3013' => 'vmu', 'Zm00001eb013110' => 'zma', 'Zm00001eb084260' => 'zma', 'Zm00001eb096110' => 'zma', 'Zm00001eb217510' => 'zma', 'Zm00001eb322550' => 'zma', 'Zm00001eb390770' => 'zma', 'Zm00001eb397170' => 'zma', 'Zm00001eb404610' => 'zma', 'Zm00001eb421790' => 'zma' ), 'gf_id' => 'HOM05D000911', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000911' ), 'data_identifier' => 'HOM05D000911', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000911', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27780' => 'bna', 'A03p35380' => 'bna', 'A04p21160' => 'bna', 'A05p40570' => 'bna', 'A06p26900' => 'bna', 'A08p33230' => 'bna', 'A09p65960' => 'bna', 'A10p18290' => 'bna', 'Aa31LG1G12990' => 'aar', 'Aa31LG1G2980' => 'aar', 'Aa31LG4G14320' => 'aar', 'Aa31LG7G11800' => 'aar', 'Aa31sc36G50' => 'aar', 'Aa31sc36G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3721' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5459' => 'aag', 'Actinidia03028' => 'ach', 'Actinidia03753' => 'ach', 'Actinidia04187' => 'ach', 'Actinidia05509' => 'ach', 'Actinidia24180' => 'ach', 'Actinidia26906' => 'ach', 'Actinidia37097' => 'ach', 'Actinidia38249' => 'ach', 'Ah.01g003470' => 'amhyb', 'Ah.01g004580' => 'amhyb', 'Ah.01g014850' => 'amhyb', 'Ah.01g016830' => 'amhyb', 'Ah.14g088000' => 'amhyb', 'AL1G22980' => 'aly', 'AL3G18990' => 'aly', 'AL4G22440' => 'aly', 'AL4G33180' => 'aly', 'AL5G22920' => 'aly', 'AL6G33660' => 'aly', 'AL8G20720' => 'aly', 'Aqoxy1G00935' => 'aox', 'Aqoxy1G02094' => 'aox', 'Aqoxy2G01239' => 'aox', 'Aqoxy4G01870' => 'aox', 'Aqoxy7G00450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.36ZVTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71EM27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5D6C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH3WRE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3NCM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RIM768' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YB5YRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z36GDV' => 'arhy', 'AT1G08250' => 'ath', 'AT1G11790' => 'ath', 'AT2G27820' => 'ath', 'AT3G07630' => 'ath', 'AT3G44720' => 'ath', 'AT5G22630' => 'ath', 'ATR0693G304' => 'atr', 'ATR0794G109' => 'atr', 'ATR0820G120' => 'atr', 'ATR1159G064' => 'atr', 'Atru.chr10.2239' => 'acertr', 'Atru.chr3.3371' => 'acertr', 'Atru.chr6.3202' => 'acertr', 'AUR62006499' => 'cqu', 'AUR62012718' => 'cqu', 'AUR62021938' => 'cqu', 'AUR62023932' => 'cqu', 'AUR62025034' => 'cqu', 'AUR62025035' => 'cqu', 'AUR62038307' => 'cqu', 'AUR62043466' => 'cqu', 'BcaB02g10748' => 'bca', 'BcaB03g13231' => 'bca', 'BcaB03g14689' => 'bca', 'BcaB05g22716' => 'bca', 'BcaB06g28172' => 'bca', 'BcaB08g36413' => 'bca', 'BcaC01g02186' => 'bca', 'BcaC01g04272' => 'bca', 'BcaC02g08080' => 'bca', 'BcaC02g08227' => 'bca', 'BcaC03g13901' => 'bca', 'BcaC04g19593' => 'bca', 'BcaC04g20874' => 'bca', 'BcaC05g29557' => 'bca', 'BcaC06g35505' => 'bca', 'BcaC07g41954' => 'bca', 'BcaC07g41955' => 'bca', 'BcaC07g41956' => 'bca', 'BcaC07g42519' => 'bca', 'BcaC07g42520' => 'bca', 'BcaC07g42523' => 'bca', 'BcaC07g42524' => 'bca', 'BcaC07g42525' => 'bca', 'BcaC08g47480' => 'bca', 'BcaC08g47481' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00530' => 'bna', 'BolC2t07178H' => 'bol', 'BolC3t16567H' => 'bol', 'BolC4t27234H' => 'bol', 'BolC5t29728H' => 'bol', 'BolC5t34622H' => 'bol', 'BolC6t40321H' => 'bol', 'BolC7t42028H' => 'bol', 'BolC8t49125H' => 'bol', 'BolC8t52538H' => 'bol', 'BolC8t52539H' => 'bol', 'BolC9t56681H' => 'bol', 'BolC9t58266H' => 'bol', 'BolSC21t60294H' => 'bol', 'BraA02t05670Z' => 'bra', 'BraA03t12716Z' => 'bra', 'BraA04t17685Z' => 'bra', 'BraA05t22788Z' => 'bra', 'BraA06t24032Z' => 'bra', 'BraA06t25625Z' => 'bra', 'BraA07t27930Z' => 'bra', 'BraA08t35242Z' => 'bra', 'BraA09t38609Z' => 'bra', 'BraA10t43905Z' => 'bra', 'C02p11060' => 'bna', 'C03p42990' => 'bna', 'C03p67310' => 'bna', 'C04p56990' => 'bna', 'C04p58660' => 'bna', 'C05p09890' => 'bna', 'C05p59680' => 'bna', 'C06p19830' => 'bna', 'C06p53040' => 'bna', 'C07p15230' => 'bna', 'C08p50070' => 'bna', 'C08p50090' => 'bna', 'C09p38330' => 'bna', 'C09p53940' => 'bna', 'CAN.G1014.1' => 'can', 'CAN.G644.30' => 'can', 'CAN.G84.47' => 'can', 'CAN.G919.8' => 'can', 'CANSAT54G0113' => 'cansat', 'CANSAT54G1286' => 'cansat', 'CANSAT64G1020' => 'cansat', 'CARHR008080' => 'chi', 'CARHR008090' => 'chi', 'CARHR012130' => 'chi', 'CARHR038390' => 'chi', 'CARHR082330' => 'chi', 'CARHR120520' => 'chi', 'CARHR151470' => 'chi', 'CARHR190950' => 'chi', 'Carub.0001s0760' => 'cru', 'Carub.0001s1146' => 'cru', 'Carub.0003s0721' => 'cru', 'Carub.0004s0858' => 'cru', 'Carub.0005s1040' => 'cru', 'Carub.0006s2035' => 'cru', 'Carub.0015s0005' => 'cru', 'Ca_01607_v3' => 'car', 'Ca_01677_v3' => 'car', 'Ca_06087_v3' => 'car', 'Ca_19238_v3' => 'car', 'Ca_19373_v3' => 'car', 'Ca_21079_v3' => 'car', 'CBR_g54016' => 'cbr', 'CBR_g54018' => 'cbr', 'CBR_g54020' => 'cbr', 'Cc01_g09780' => 'ccan', 'Cc01_g11680' => 'ccan', 'Cc02_g15610' => 'ccan', 'Cc05_g04350' => 'ccan', 'Cc09_g01580' => 'ccan', 'CDE01G0795' => 'cde', 'CDE02G2024' => 'cde', 'CDE02G2260' => 'cde', 'CDE02G4561' => 'cde', 'CDE05G2733' => 'cde', 'CDE05G3422' => 'cde', 'CDE06G2003' => 'cde', 'CDE08G0576' => 'cde', 'CDE09G0048' => 'cde', 'CDE11G0805' => 'cde', 'Cfa003644' => 'cfa', 'Cfa006290' => 'cfa', 'Cfa010080' => 'cfa', 'Cfa011376' => 'cfa', 'Cfa011576' => 'cfa', 'Cfa011577' => 'cfa', 'Cfa014389' => 'cfa', 'Ciclev10006044m.g' => 'ccl', 'Ciclev10006954m.g' => 'ccl', 'Ciclev10015131m.g' => 'ccl', 'Ciclev10015580m.g' => 'ccl', 'Ciclev10028359m.g' => 'ccl', 'Ciclev10028573m.g' => 'ccl', 'CiPaw.03G159300' => 'cil', 'CiPaw.04G115100' => 'cil', 'CiPaw.09G092800' => 'cil', 'CiPaw.10G071800' => 'cil', 'CiPaw.13G105800' => 'cil', 'CiPaw.13G141000' => 'cil', 'CiPaw.14G103400' => 'cil', 'ClCG01G012700' => 'cla', 'ClCG01G012720' => 'cla', 'ClCG01G021920' => 'cla', 'ClCG02G008870' => 'cla', 'ClCG02G020840' => 'cla', 'ClCG02G021930' => 'cla', 'COL.COLO4_19302' => 'col', 'COL.COLO4_25262' => 'col', 'COL.COLO4_31788' => 'col', 'Cpa.g.c34684' => 'cpa', 'Cpa.g.c36520.1' => 'cpa', 'Cpa.g.c45626' => 'cpa', 'Cpa.g.sc121.17' => 'cpa', 'Cpa.g.sc13.22' => 'cpa', 'Cpa.g.sc87.88' => 'cpa', 'Cre06.g261800' => 'cre', 'CsaV3_1G014500' => 'csa', 'CsaV3_1G014510' => 'csa', 'CsaV3_2G034880' => 'csa', 'CsaV3_6G014760' => 'csa', 'CsaV3_6G021500' => 'csa', 'CsaV3_6G048980' => 'csa', 'CSS0002511' => 'camsi', 'CSS0007556' => 'camsi', 'CSS0008532' => 'camsi', 'CSS0009709' => 'camsi', 'CSS0010486' => 'camsi', 'CSS0016768' => 'camsi', 'CSS0023512' => 'camsi', 'CSS0025341' => 'camsi', 'CSS0027999' => 'camsi', 'CSS0028944' => 'camsi', 'CSS0032292' => 'camsi', 'CSS0032464' => 'camsi', 'CSS0037153' => 'camsi', 'CSS0039256' => 'camsi', 'CSS0048392' => 'camsi', 'CSS0050458' => 'camsi', 'DCAR_004224' => 'dca', 'DCAR_006147' => 'dca', 'DCAR_006465' => 'dca', 'DCAR_008159' => 'dca', 'DCAR_012164' => 'dca', 'DCAR_019764' => 'dca', 'Dinv05418' => 'din', 'Dinv10839' => 'din', 'Dinv12521' => 'din', 'Dinv13900' => 'din', 'Dinv29426' => 'din', 'Duzib150G0263' => 'dzi', 'Duzib168G1178' => 'dzi', 'Duzib168G1924' => 'dzi', 'Duzib170G0299' => 'dzi', 'Duzib170G0813' => 'dzi', 'Duzib235G1128' => 'dzi', 'Duzib248G1060' => 'dzi', 'ECA232G1910' => 'eca', 'ECA233G4621' => 'eca', 'ECA238G1216' => 'eca', 'ECA238G1784' => 'eca', 'ECA248G1242' => 'eca', 'EL10Ac8g20071' => 'bvu', 'EL10Ac9g21086' => 'bvu', 'EL10Ac9g22407' => 'bvu', 'EL10Ac9g22412' => 'bvu', 'Eucgr.A01119' => 'egr', 'Eucgr.E04043' => 'egr', 'Eucgr.J00428' => 'egr', 'Eucgr.J00958' => 'egr', 'FAN11G3091' => 'fan', 'FAN11G3651' => 'fan', 'FAN16G2566' => 'fan', 'FAN21G3155' => 'fan', 'FAN21G3400' => 'fan', 'FAN21G3543' => 'fan', 'FAN25G0234' => 'fan', 'FAN25G1422' => 'fan', 'FAN25G3392' => 'fan', 'FvH4_3g01940' => 'fve', 'FvH4_3g29870' => 'fve', 'FvH4_3g33680' => 'fve', 'Glyma.09G004200' => 'gma', 'Glyma.11G151288' => 'gma', 'Glyma.11G189100' => 'gma', 'Glyma.12G072500' => 'gma', 'Glyma.12G085500' => 'gma', 'Glyma.12G181800' => 'gma', 'Glyma.12G193000' => 'gma', 'Glyma.13G309300' => 'gma', 'Glyma.13G319000' => 'gma', 'Glyma.17G012600' => 'gma', 'Gohir.A06G148600' => 'ghi', 'Gohir.A07G115800' => 'ghi', 'Gohir.A08G003600' => 'ghi', 'Gohir.A09G093300' => 'ghi', 'Gohir.A09G105400' => 'ghi', 'Gohir.A09G105500' => 'ghi', 'Gohir.D06G154600' => 'ghi', 'Gohir.D07G120200' => 'ghi', 'Gohir.D08G013900' => 'ghi', 'Gohir.D09G093100' => 'ghi', 'Gohir.D09G102200' => 'ghi', 'Gohir.D09G102300' => 'ghi', 'Gorai.001G129400' => 'gra', 'Gorai.004G008200' => 'gra', 'Gorai.006G109800' => 'gra', 'Gorai.006G119500' => 'gra', 'Gorai.006G121300' => 'gra', 'Gorai.010G180700' => 'gra', 'GSVIVG01012716001' => 'vvi', 'GSVIVG01025118001' => 'vvi', 'GSVIVG01030439001' => 'vvi', 'GSVIVG01031397001' => 'vvi', 'HanXRQChr01g0004201' => 'han', 'HanXRQChr02g0054941' => 'han', 'HanXRQChr05g0141811' => 'han', 'HanXRQChr07g0197751' => 'han', 'HanXRQChr11g0346691' => 'han', 'HanXRQChr13g0396971' => 'han', 'HanXRQChr14g0432951' => 'han', 'HanXRQChr14g0452001' => 'han', 'HanXRQChr15g0496681' => 'han', 'HanXRQChr17g0557491' => 'han', 'HanXRQChr17g0557501' => 'han', 'Haze_06809' => 'cav', 'Haze_12852' => 'cav', 'Haze_15850' => 'cav', 'Haze_23446' => 'cav', 'Haze_23942' => 'cav', 'Haze_23943' => 'cav', 'Hma1.2p1_0091F.1_g046450' => 'hma', 'Hma1.2p1_0128F.1_g059910' => 'hma', 'Hma1.2p1_0249F.1_g102260' => 'hma', 'Hma1.2p1_0453F.1_g156190' => 'hma', 'Hma1.2p1_0695F.1_g204380' => 'hma', 'Hma1.2p1_0749F.1_g212650' => 'hma', 'Hma1.2p1_2156F.1_g315420' => 'hma', 'Hma1.2p1_2686F.1_g326940' => 'hma', 'HPP92_006428' => 'vpl', 'HPP92_012069' => 'vpl', 'HPP92_014129' => 'vpl', 'HPP92_014133' => 'vpl', 'HPP92_017315' => 'vpl', 'HPP92_026445' => 'vpl', 'HPP92_026446' => 'vpl', 'Hund00774' => 'sun', 'Hund07682' => 'sun', 'Hund21413' => 'sun', 'Hund23462' => 'sun', 'Hund23463' => 'sun', 'Lalb_Chr03g0027911' => 'lal', 'Lalb_Chr13g0304271' => 'lal', 'Lalb_Chr19g0137471' => 'lal', 'Lalb_Chr22g0350651' => 'lal', 'Lalb_Chr24g0395151' => 'lal', 'Lj1A1231T40' => 'lonja', 'Lj1A221T48' => 'lonja', 'Lj1C924T12' => 'lonja', 'Lj2C993G6' => 'lonja', 'Lj3g0005790' => 'lja', 'Lj3g0015432' => 'lja', 'Lj3g0017722' => 'lja', 'Lj3g0018497' => 'lja', 'Lj4g0025071' => 'lja', 'Lsat_1_v5_gn_1_129680' => 'lsa', 'Lsat_1_v5_gn_2_25321' => 'lsa', 'Lsat_1_v5_gn_2_95461' => 'lsa', 'Lsat_1_v5_gn_4_159620' => 'lsa', 'Lsat_1_v5_gn_6_41301' => 'lsa', 'Lsat_1_v5_gn_6_74660' => 'lsa', 'Lsat_1_v5_gn_7_11520' => 'lsa', 'Lsat_1_v5_gn_9_67680' => 'lsa', 'Manes.04G008300' => 'mes', 'Manes.04G008400' => 'mes', 'Manes.04G026500' => 'mes', 'Manes.10G135300' => 'mes', 'Manes.11G157300' => 'mes', 'Manes.12G074000' => 'mes', 'Manes.16G006200' => 'mes', 'Manes.17G026400' => 'mes', 'Mapoly0024s0086' => 'mpo', 'Mapoly0024s0087' => 'mpo', 'Mapoly0071s0057' => 'mpo', 'Mapoly0204s0012' => 'mpo', 'MBI04_g37681_MAGBIO' => 'mbi', 'MBI05_g17779_MAGBIO' => 'mbi', 'MBI12_g31184_MAGBIO' => 'mbi', 'MBI17_g11083_MAGBIO' => 'mbi', 'MBI18_g03883_MAGBIO' => 'mbi', 'MBI18_g28940_MAGBIO' => 'mbi', 'MCO01G690' => 'mco', 'MD03G1109900' => 'mdo', 'MD03G1134800' => 'mdo', 'MD05G1348000' => 'mdo', 'MD10G1322400' => 'mdo', 'MD11G1123300' => 'mdo', 'MD11G1157600' => 'mdo', 'Medtr2g084875' => 'mtr', 'Medtr2g088130' => 'mtr', 'Medtr4g055310' => 'mtr', 'Medtr4g061070' => 'mtr', 'Medtr4g132250' => 'mtr', 'MELO3C004795.2' => 'cme', 'MELO3C004797.2' => 'cme', 'MELO3C007396.2' => 'cme', 'MELO3C019277.2' => 'cme', 'MELO3C021449.2' => 'cme', 'MELO3C025736.2' => 'cme', 'Migut.D02175' => 'egut', 'Migut.H01573' => 'egut', 'Migut.M01327' => 'egut', 'Migut.N02513' => 'egut', 'MSTRG.14638' => 'ama', 'MSTRG.18632' => 'ama', 'MSTRG.7203' => 'ama', 'Nitab4.5_0000533g0140' => 'nta', 'Nitab4.5_0000888g0150' => 'nta', 'Nitab4.5_0001453g0040' => 'nta', 'Nitab4.5_0002827g0090' => 'nta', 'Nitab4.5_0003082g0040' => 'nta', 'Nitab4.5_0007799g0040' => 'nta', 'Nitab4.5_0008983g0010' => 'nta', 'Nitab4.5_0009017g0020' => 'nta', 'Nn1g02132' => 'nnu', 'Nn1g03492' => 'nnu', 'Nn1g03493' => 'nnu', 'Nn1g03494' => 'nnu', 'Nn1g07164' => 'nnu', 'Nn1g07291' => 'nnu', 'Nn2g10655' => 'nnu', 'Nn2g11652' => 'nnu', 'Nn2g14008' => 'nnu', 'Nn3g17476' => 'nnu', 'Nn3g17477' => 'nnu', 'Nn4g22370' => 'nnu', 'Nn4g25255' => 'nnu', 'Nn5g27755' => 'nnu', 'Nn6g34260' => 'nnu', 'Nn6g35041' => 'nnu', 'Oeu005924.1' => 'oeu', 'Oeu008383.1' => 'oeu', 'Oeu014928.1' => 'oeu', 'Oeu019889.1' => 'oeu', 'Oeu022271.1' => 'oeu', 'Oeu025271.1' => 'oeu', 'Oeu036302.1' => 'oeu', 'Oeu044100.1' => 'oeu', 'Os01g0528300' => 'osa', 'Os03g0286200' => 'osa', 'Os04g0406600' => 'osa', 'Os07g0512000' => 'osa', 'Os07g0694600' => 'osa', 'Os08g0411000' => 'osa', 'Os09g0565700' => 'osa', 'Os09g0566050' => 'osa', 'Os10g0523700' => 'osa', 'Peaxi162Scf00002g00514' => 'pax', 'Peaxi162Scf00047g01817' => 'pax', 'Peaxi162Scf00114g00001' => 'pax', 'Peaxi162Scf00147g00613' => 'pax', 'Peaxi162Scf00389g00425' => 'pax', 'PGR042G1139' => 'pgr', 'PGR042G3273' => 'pgr', 'PGR102G2180' => 'pgr', 'PGR119G0234' => 'pgr', 'PGR119G0668' => 'pgr', 'PGSC0003DMG400007122' => 'stu', 'PGSC0003DMG400016478' => 'stu', 'PGSC0003DMG400025374' => 'stu', 'PGSC0003DMG400026536' => 'stu', 'Phvul.003G079600' => 'pvu', 'Phvul.005G115600' => 'pvu', 'Phvul.005G127100' => 'pvu', 'Phvul.006G149500' => 'pvu', 'Phvul.006G149600' => 'pvu', 'Phvul.011G071800' => 'pvu', 'Phvul.011G090400' => 'pvu', 'Potri.004G013400' => 'ptr', 'Potri.004G188100' => 'ptr', 'Potri.008G195500' => 'ptr', 'Potri.009G148800' => 'ptr', 'Potri.011G004700' => 'ptr', 'Pp3c17_22810' => 'ppa', 'Pp3c18_4480' => 'ppa', 'Pp3c19_13030' => 'ppa', 'Pp3c1_33620' => 'ppa', 'Pp3c2_9380' => 'ppa', 'PRCOL_00001023' => 'pco', 'Prupe.3G216300' => 'ppe', 'Prupe.4G019500' => 'ppe', 'Prupe.6G092500' => 'ppe', 'Prupe.6G119200' => 'ppe', 'Psat0s1945g0080' => 'psa', 'Psat0s4167g0040' => 'psa', 'Psat1g185800' => 'psa', 'Psat4g006440' => 'psa', 'Psat4g006480' => 'psa', 'Psat4g168120' => 'psa', 'Psat5g255680' => 'psa', 'Psat5g261760' => 'psa', 'Psat7g222120' => 'psa', 'PSO063G7252' => 'pso', 'PSO170G4778' => 'pso', 'PSO210G2249' => 'pso', 'PSO339G2411' => 'pso', 'PSO339G2457' => 'pso', 'PSO339G2854' => 'pso', 'PSO339G4288' => 'pso', 'PSO339G4615' => 'pso', 'PSO384G2796' => 'pso', 'PSO384G2940' => 'pso', 'PSO384G4227' => 'pso', 'PSO478G1425' => 'pso', 'PSO541G3863' => 'pso', 'PSO675G0507' => 'pso', 'PSO782G0338' => 'pso', 'PSO832G0644' => 'pso', 'QL01p013664' => 'qlo', 'QL01p036598' => 'qlo', 'QL05p072984' => 'qlo', 'QL08p005768' => 'qlo', 'QL08p032743' => 'qlo', 'QL93p0073_0439' => 'qlo', 'QL93p0073_0444' => 'qlo', 'RcHm_v2.0_Chr5g0002851' => 'rch', 'RcHm_v2.0_Chr5g0055201' => 'rch', 'RcHm_v2.0_Chr5g0061191' => 'rch', 'RcHm_v2.0_Chr7g0203231' => 'rch', 'Rhsim01G0208100' => 'rsi', 'Rhsim01G0208200' => 'rsi', 'Rhsim02G0106500' => 'rsi', 'Rhsim03G0107900' => 'rsi', 'Rhsim06G0163400' => 'rsi', 'Rhsim13G0105200' => 'rsi', 'Sabra04G0006300' => 'sbr', 'Sabra04G0127000' => 'sbr', 'Sabra08G0148700' => 'sbr', 'Sabra09G0117400' => 'sbr', 'SalBow1G3326' => 'sbo', 'SalBow3G3228' => 'sbo', 'SalBow6G1634' => 'sbo', 'SalBow6G3603' => 'sbo', 'SalBow6G5266' => 'sbo', 'SalBow7G2265' => 'sbo', 'SalBow8G0850' => 'sbo', 'SalBow8G2592' => 'sbo', 'Sc05g0009240' => 'sci', 'Sc12g0002300' => 'sci', 'Sc21g0000100' => 'sci', 'Sc21g0004720' => 'sci', 'Sed0002949' => 'sed', 'Sed0004114' => 'sed', 'Sed0004306' => 'sed', 'Sed0006172' => 'sed', 'Sed0008413' => 'sed', 'Sed0013809' => 'sed', 'Sed0019556' => 'sed', 'SEGI_03570' => 'sgi', 'SEGI_07859' => 'sgi', 'SEGI_15042' => 'sgi', 'SEGI_16263' => 'sgi', 'SEGI_16552' => 'sgi', 'SEGI_24331' => 'sgi', 'SEGI_27316' => 'sgi', 'SEGI_29521' => 'sgi', 'SEGI_41342' => 'sgi', 'SGA_v2.0_scaffold27G11617' => 'sas', 'SGA_v2.0_scaffold316G48428' => 'sas', 'SGA_v2.0_scaffold49G18261' => 'sas', 'SGA_v2.0_scaffold7G03831' => 'sas', 'SGA_v2.0_scaffold93G28359' => 'sas', 'SHI02210' => 'shi', 'SHI06028' => 'shi', 'SHI06321' => 'shi', 'SMO111G0012' => 'smo', 'SMO228G0080' => 'smo', 'SMO356G0756' => 'smo', 'Solyc02g080620.3' => 'sly', 'Solyc06g074530.1' => 'sly', 'Solyc11g066890.1' => 'sly', 'Solyc11g072520.3' => 'sly', 'Sopen02g025330' => 'spe', 'Sopen06g031000' => 'spe', 'Sopen09g008240' => 'spe', 'Sopen09g025210' => 'spe', 'Sopen11g026600' => 'spe', 'Sopen11g030170' => 'spe', 'Sp1g10420' => 'spa', 'Sp3g06570' => 'spa', 'Sp4g10660' => 'spa', 'Sp5g16460' => 'spa', 'Sp6g22710' => 'spa', 'TAR365G0112' => 'tar', 'TAR369G0717' => 'tar', 'TAR374G0976' => 'tar', 'TAR623G1128' => 'tar', 'TAR626G1937' => 'tar', 'TAR627G0123' => 'tar', 'TAR628G0305' => 'tar', 'TAR636G1176' => 'tar', 'TAR636G2442' => 'tar', 'THA.LOC104800556' => 'tha', 'THA.LOC104809501' => 'tha', 'THA.LOC104815126' => 'tha', 'THA.LOC104815732' => 'tha', 'THA.LOC104823528' => 'tha', 'Thecc.02G365600' => 'tca', 'Thecc.06G222300' => 'tca', 'Thecc.09G261800' => 'tca', 'Thecc.09G291400' => 'tca', 'Thhalv10003028m.g' => 'esa', 'Thhalv10007886m.g' => 'esa', 'Thhalv10016085m.g' => 'esa', 'Thhalv10016681m.g' => 'esa', 'Thhalv10020951m.g' => 'esa', 'TPR.G15598' => 'tpr', 'TPR.G29305' => 'tpr', 'TPR.G32395' => 'tpr', 'TPR.G36998' => 'tpr', 'TPR.G4227' => 'tpr', 'TWI18G1433' => 'twi', 'TWI31G0755' => 'twi', 'TWI38G0912' => 'twi', 'TWI75G1097' => 'twi', 'TWI75G1619' => 'twi', 'TWI79G1336' => 'twi', 'unitig_0.g943' => 'ugi', 'unitig_0.g944' => 'ugi', 'unitig_22.g6646' => 'ugi', 'unitig_37.g12681' => 'ugi', 'unitig_8.g3290' => 'ugi', 'vmacro03278' => 'vma', 'vmacro12197' => 'vma', 'vmacro14478' => 'vma', 'vmacro15787' => 'vma', 'vmacro15789' => 'vma', 'vmacro15790' => 'vma', 'vmacro15806' => 'vma', 'vmacro22907' => 'vma', 'vmacro22908' => 'vma', 'vmacro22909' => 'vma', 'vmacro23108' => 'vma', 'VMungo0540G0540' => 'vmu', 'VMungo0540G2468' => 'vmu', 'VMungo1080G0390' => 'vmu', 'VMungo1080G1165' => 'vmu', 'VMungo1127G0170' => 'vmu', 'VMungo1127G2099' => 'vmu', 'VMungo1215G3013' => 'vmu', 'Zm00001eb013110' => 'zma', 'Zm00001eb084260' => 'zma', 'Zm00001eb096110' => 'zma', 'Zm00001eb217510' => 'zma', 'Zm00001eb322550' => 'zma', 'Zm00001eb390770' => 'zma', 'Zm00001eb397170' => 'zma', 'Zm00001eb404610' => 'zma', 'Zm00001eb421790' => 'zma' ) $gf_id = 'HOM05D000911' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000911' ) $data_identifier = 'HOM05D000911' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 16, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 5, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 6, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 8, 'nnu' => (int) 16, 'oeu' => (int) 8, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 5, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 16, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421790' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000911', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27780' => 'bna', 'A03p35380' => 'bna', 'A04p21160' => 'bna', 'A05p40570' => 'bna', 'A06p26900' => 'bna', 'A08p33230' => 'bna', 'A09p65960' => 'bna', 'A10p18290' => 'bna', 'Aa31LG1G12990' => 'aar', 'Aa31LG1G2980' => 'aar', 'Aa31LG4G14320' => 'aar', 'Aa31LG7G11800' => 'aar', 'Aa31sc36G50' => 'aar', 'Aa31sc36G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3721' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5459' => 'aag', 'Actinidia03028' => 'ach', 'Actinidia03753' => 'ach', 'Actinidia04187' => 'ach', 'Actinidia05509' => 'ach', 'Actinidia24180' => 'ach', 'Actinidia26906' => 'ach', 'Actinidia37097' => 'ach', 'Actinidia38249' => 'ach', 'Ah.01g003470' => 'amhyb', 'Ah.01g004580' => 'amhyb', 'Ah.01g014850' => 'amhyb', 'Ah.01g016830' => 'amhyb', 'Ah.14g088000' => 'amhyb', 'AL1G22980' => 'aly', 'AL3G18990' => 'aly', 'AL4G22440' => 'aly', 'AL4G33180' => 'aly', 'AL5G22920' => 'aly', 'AL6G33660' => 'aly', 'AL8G20720' => 'aly', 'Aqoxy1G00935' => 'aox', 'Aqoxy1G02094' => 'aox', 'Aqoxy2G01239' => 'aox', 'Aqoxy4G01870' => 'aox', 'Aqoxy7G00450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.36ZVTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71EM27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5D6C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH3WRE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3NCM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RIM768' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YB5YRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z36GDV' => 'arhy', 'AT1G08250' => 'ath', 'AT1G11790' => 'ath', 'AT2G27820' => 'ath', 'AT3G07630' => 'ath', 'AT3G44720' => 'ath', 'AT5G22630' => 'ath', 'ATR0693G304' => 'atr', 'ATR0794G109' => 'atr', 'ATR0820G120' => 'atr', 'ATR1159G064' => 'atr', 'Atru.chr10.2239' => 'acertr', 'Atru.chr3.3371' => 'acertr', 'Atru.chr6.3202' => 'acertr', 'AUR62006499' => 'cqu', 'AUR62012718' => 'cqu', 'AUR62021938' => 'cqu', 'AUR62023932' => 'cqu', 'AUR62025034' => 'cqu', 'AUR62025035' => 'cqu', 'AUR62038307' => 'cqu', 'AUR62043466' => 'cqu', 'BcaB02g10748' => 'bca', 'BcaB03g13231' => 'bca', 'BcaB03g14689' => 'bca', 'BcaB05g22716' => 'bca', 'BcaB06g28172' => 'bca', 'BcaB08g36413' => 'bca', 'BcaC01g02186' => 'bca', 'BcaC01g04272' => 'bca', 'BcaC02g08080' => 'bca', 'BcaC02g08227' => 'bca', 'BcaC03g13901' => 'bca', 'BcaC04g19593' => 'bca', 'BcaC04g20874' => 'bca', 'BcaC05g29557' => 'bca', 'BcaC06g35505' => 'bca', 'BcaC07g41954' => 'bca', 'BcaC07g41955' => 'bca', 'BcaC07g41956' => 'bca', 'BcaC07g42519' => 'bca', 'BcaC07g42520' => 'bca', 'BcaC07g42523' => 'bca', 'BcaC07g42524' => 'bca', 'BcaC07g42525' => 'bca', 'BcaC08g47480' => 'bca', 'BcaC08g47481' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00530' => 'bna', 'BolC2t07178H' => 'bol', 'BolC3t16567H' => 'bol', 'BolC4t27234H' => 'bol', 'BolC5t29728H' => 'bol', 'BolC5t34622H' => 'bol', 'BolC6t40321H' => 'bol', 'BolC7t42028H' => 'bol', 'BolC8t49125H' => 'bol', 'BolC8t52538H' => 'bol', 'BolC8t52539H' => 'bol', 'BolC9t56681H' => 'bol', 'BolC9t58266H' => 'bol', 'BolSC21t60294H' => 'bol', 'BraA02t05670Z' => 'bra', 'BraA03t12716Z' => 'bra', 'BraA04t17685Z' => 'bra', 'BraA05t22788Z' => 'bra', 'BraA06t24032Z' => 'bra', 'BraA06t25625Z' => 'bra', 'BraA07t27930Z' => 'bra', 'BraA08t35242Z' => 'bra', 'BraA09t38609Z' => 'bra', 'BraA10t43905Z' => 'bra', 'C02p11060' => 'bna', 'C03p42990' => 'bna', 'C03p67310' => 'bna', 'C04p56990' => 'bna', 'C04p58660' => 'bna', 'C05p09890' => 'bna', 'C05p59680' => 'bna', 'C06p19830' => 'bna', 'C06p53040' => 'bna', 'C07p15230' => 'bna', 'C08p50070' => 'bna', 'C08p50090' => 'bna', 'C09p38330' => 'bna', 'C09p53940' => 'bna', 'CAN.G1014.1' => 'can', 'CAN.G644.30' => 'can', 'CAN.G84.47' => 'can', 'CAN.G919.8' => 'can', 'CANSAT54G0113' => 'cansat', 'CANSAT54G1286' => 'cansat', 'CANSAT64G1020' => 'cansat', 'CARHR008080' => 'chi', 'CARHR008090' => 'chi', 'CARHR012130' => 'chi', 'CARHR038390' => 'chi', 'CARHR082330' => 'chi', 'CARHR120520' => 'chi', 'CARHR151470' => 'chi', 'CARHR190950' => 'chi', 'Carub.0001s0760' => 'cru', 'Carub.0001s1146' => 'cru', 'Carub.0003s0721' => 'cru', 'Carub.0004s0858' => 'cru', 'Carub.0005s1040' => 'cru', 'Carub.0006s2035' => 'cru', 'Carub.0015s0005' => 'cru', 'Ca_01607_v3' => 'car', 'Ca_01677_v3' => 'car', 'Ca_06087_v3' => 'car', 'Ca_19238_v3' => 'car', 'Ca_19373_v3' => 'car', 'Ca_21079_v3' => 'car', 'CBR_g54016' => 'cbr', 'CBR_g54018' => 'cbr', 'CBR_g54020' => 'cbr', 'Cc01_g09780' => 'ccan', 'Cc01_g11680' => 'ccan', 'Cc02_g15610' => 'ccan', 'Cc05_g04350' => 'ccan', 'Cc09_g01580' => 'ccan', 'CDE01G0795' => 'cde', 'CDE02G2024' => 'cde', 'CDE02G2260' => 'cde', 'CDE02G4561' => 'cde', 'CDE05G2733' => 'cde', 'CDE05G3422' => 'cde', 'CDE06G2003' => 'cde', 'CDE08G0576' => 'cde', 'CDE09G0048' => 'cde', 'CDE11G0805' => 'cde', 'Cfa003644' => 'cfa', 'Cfa006290' => 'cfa', 'Cfa010080' => 'cfa', 'Cfa011376' => 'cfa', 'Cfa011576' => 'cfa', 'Cfa011577' => 'cfa', 'Cfa014389' => 'cfa', 'Ciclev10006044m.g' => 'ccl', 'Ciclev10006954m.g' => 'ccl', 'Ciclev10015131m.g' => 'ccl', 'Ciclev10015580m.g' => 'ccl', 'Ciclev10028359m.g' => 'ccl', 'Ciclev10028573m.g' => 'ccl', 'CiPaw.03G159300' => 'cil', 'CiPaw.04G115100' => 'cil', 'CiPaw.09G092800' => 'cil', 'CiPaw.10G071800' => 'cil', 'CiPaw.13G105800' => 'cil', 'CiPaw.13G141000' => 'cil', 'CiPaw.14G103400' => 'cil', 'ClCG01G012700' => 'cla', 'ClCG01G012720' => 'cla', 'ClCG01G021920' => 'cla', 'ClCG02G008870' => 'cla', 'ClCG02G020840' => 'cla', 'ClCG02G021930' => 'cla', 'COL.COLO4_19302' => 'col', 'COL.COLO4_25262' => 'col', 'COL.COLO4_31788' => 'col', 'Cpa.g.c34684' => 'cpa', 'Cpa.g.c36520.1' => 'cpa', 'Cpa.g.c45626' => 'cpa', 'Cpa.g.sc121.17' => 'cpa', 'Cpa.g.sc13.22' => 'cpa', 'Cpa.g.sc87.88' => 'cpa', 'Cre06.g261800' => 'cre', 'CsaV3_1G014500' => 'csa', 'CsaV3_1G014510' => 'csa', 'CsaV3_2G034880' => 'csa', 'CsaV3_6G014760' => 'csa', 'CsaV3_6G021500' => 'csa', 'CsaV3_6G048980' => 'csa', 'CSS0002511' => 'camsi', 'CSS0007556' => 'camsi', 'CSS0008532' => 'camsi', 'CSS0009709' => 'camsi', 'CSS0010486' => 'camsi', 'CSS0016768' => 'camsi', 'CSS0023512' => 'camsi', 'CSS0025341' => 'camsi', 'CSS0027999' => 'camsi', 'CSS0028944' => 'camsi', 'CSS0032292' => 'camsi', 'CSS0032464' => 'camsi', 'CSS0037153' => 'camsi', 'CSS0039256' => 'camsi', 'CSS0048392' => 'camsi', 'CSS0050458' => 'camsi', 'DCAR_004224' => 'dca', 'DCAR_006147' => 'dca', 'DCAR_006465' => 'dca', 'DCAR_008159' => 'dca', 'DCAR_012164' => 'dca', 'DCAR_019764' => 'dca', 'Dinv05418' => 'din', 'Dinv10839' => 'din', 'Dinv12521' => 'din', 'Dinv13900' => 'din', 'Dinv29426' => 'din', 'Duzib150G0263' => 'dzi', 'Duzib168G1178' => 'dzi', 'Duzib168G1924' => 'dzi', 'Duzib170G0299' => 'dzi', 'Duzib170G0813' => 'dzi', 'Duzib235G1128' => 'dzi', 'Duzib248G1060' => 'dzi', 'ECA232G1910' => 'eca', 'ECA233G4621' => 'eca', 'ECA238G1216' => 'eca', 'ECA238G1784' => 'eca', 'ECA248G1242' => 'eca', 'EL10Ac8g20071' => 'bvu', 'EL10Ac9g21086' => 'bvu', 'EL10Ac9g22407' => 'bvu', 'EL10Ac9g22412' => 'bvu', 'Eucgr.A01119' => 'egr', 'Eucgr.E04043' => 'egr', 'Eucgr.J00428' => 'egr', 'Eucgr.J00958' => 'egr', 'FAN11G3091' => 'fan', 'FAN11G3651' => 'fan', 'FAN16G2566' => 'fan', 'FAN21G3155' => 'fan', 'FAN21G3400' => 'fan', 'FAN21G3543' => 'fan', 'FAN25G0234' => 'fan', 'FAN25G1422' => 'fan', 'FAN25G3392' => 'fan', 'FvH4_3g01940' => 'fve', 'FvH4_3g29870' => 'fve', 'FvH4_3g33680' => 'fve', 'Glyma.09G004200' => 'gma', 'Glyma.11G151288' => 'gma', 'Glyma.11G189100' => 'gma', 'Glyma.12G072500' => 'gma', 'Glyma.12G085500' => 'gma', 'Glyma.12G181800' => 'gma', 'Glyma.12G193000' => 'gma', 'Glyma.13G309300' => 'gma', 'Glyma.13G319000' => 'gma', 'Glyma.17G012600' => 'gma', 'Gohir.A06G148600' => 'ghi', 'Gohir.A07G115800' => 'ghi', 'Gohir.A08G003600' => 'ghi', 'Gohir.A09G093300' => 'ghi', 'Gohir.A09G105400' => 'ghi', 'Gohir.A09G105500' => 'ghi', 'Gohir.D06G154600' => 'ghi', 'Gohir.D07G120200' => 'ghi', 'Gohir.D08G013900' => 'ghi', 'Gohir.D09G093100' => 'ghi', 'Gohir.D09G102200' => 'ghi', 'Gohir.D09G102300' => 'ghi', 'Gorai.001G129400' => 'gra', 'Gorai.004G008200' => 'gra', 'Gorai.006G109800' => 'gra', 'Gorai.006G119500' => 'gra', 'Gorai.006G121300' => 'gra', 'Gorai.010G180700' => 'gra', 'GSVIVG01012716001' => 'vvi', 'GSVIVG01025118001' => 'vvi', 'GSVIVG01030439001' => 'vvi', 'GSVIVG01031397001' => 'vvi', 'HanXRQChr01g0004201' => 'han', 'HanXRQChr02g0054941' => 'han', 'HanXRQChr05g0141811' => 'han', 'HanXRQChr07g0197751' => 'han', 'HanXRQChr11g0346691' => 'han', 'HanXRQChr13g0396971' => 'han', 'HanXRQChr14g0432951' => 'han', 'HanXRQChr14g0452001' => 'han', 'HanXRQChr15g0496681' => 'han', 'HanXRQChr17g0557491' => 'han', 'HanXRQChr17g0557501' => 'han', 'Haze_06809' => 'cav', 'Haze_12852' => 'cav', 'Haze_15850' => 'cav', 'Haze_23446' => 'cav', 'Haze_23942' => 'cav', 'Haze_23943' => 'cav', 'Hma1.2p1_0091F.1_g046450' => 'hma', 'Hma1.2p1_0128F.1_g059910' => 'hma', 'Hma1.2p1_0249F.1_g102260' => 'hma', 'Hma1.2p1_0453F.1_g156190' => 'hma', 'Hma1.2p1_0695F.1_g204380' => 'hma', 'Hma1.2p1_0749F.1_g212650' => 'hma', 'Hma1.2p1_2156F.1_g315420' => 'hma', 'Hma1.2p1_2686F.1_g326940' => 'hma', 'HPP92_006428' => 'vpl', 'HPP92_012069' => 'vpl', 'HPP92_014129' => 'vpl', 'HPP92_014133' => 'vpl', 'HPP92_017315' => 'vpl', 'HPP92_026445' => 'vpl', 'HPP92_026446' => 'vpl', 'Hund00774' => 'sun', 'Hund07682' => 'sun', 'Hund21413' => 'sun', 'Hund23462' => 'sun', 'Hund23463' => 'sun', 'Lalb_Chr03g0027911' => 'lal', 'Lalb_Chr13g0304271' => 'lal', 'Lalb_Chr19g0137471' => 'lal', 'Lalb_Chr22g0350651' => 'lal', 'Lalb_Chr24g0395151' => 'lal', 'Lj1A1231T40' => 'lonja', 'Lj1A221T48' => 'lonja', 'Lj1C924T12' => 'lonja', 'Lj2C993G6' => 'lonja', 'Lj3g0005790' => 'lja', 'Lj3g0015432' => 'lja', 'Lj3g0017722' => 'lja', 'Lj3g0018497' => 'lja', 'Lj4g0025071' => 'lja', 'Lsat_1_v5_gn_1_129680' => 'lsa', 'Lsat_1_v5_gn_2_25321' => 'lsa', 'Lsat_1_v5_gn_2_95461' => 'lsa', 'Lsat_1_v5_gn_4_159620' => 'lsa', 'Lsat_1_v5_gn_6_41301' => 'lsa', 'Lsat_1_v5_gn_6_74660' => 'lsa', 'Lsat_1_v5_gn_7_11520' => 'lsa', 'Lsat_1_v5_gn_9_67680' => 'lsa', 'Manes.04G008300' => 'mes', 'Manes.04G008400' => 'mes', 'Manes.04G026500' => 'mes', 'Manes.10G135300' => 'mes', 'Manes.11G157300' => 'mes', 'Manes.12G074000' => 'mes', 'Manes.16G006200' => 'mes', 'Manes.17G026400' => 'mes', 'Mapoly0024s0086' => 'mpo', 'Mapoly0024s0087' => 'mpo', 'Mapoly0071s0057' => 'mpo', 'Mapoly0204s0012' => 'mpo', 'MBI04_g37681_MAGBIO' => 'mbi', 'MBI05_g17779_MAGBIO' => 'mbi', 'MBI12_g31184_MAGBIO' => 'mbi', 'MBI17_g11083_MAGBIO' => 'mbi', 'MBI18_g03883_MAGBIO' => 'mbi', 'MBI18_g28940_MAGBIO' => 'mbi', 'MCO01G690' => 'mco', 'MD03G1109900' => 'mdo', 'MD03G1134800' => 'mdo', 'MD05G1348000' => 'mdo', 'MD10G1322400' => 'mdo', 'MD11G1123300' => 'mdo', 'MD11G1157600' => 'mdo', 'Medtr2g084875' => 'mtr', 'Medtr2g088130' => 'mtr', 'Medtr4g055310' => 'mtr', 'Medtr4g061070' => 'mtr', 'Medtr4g132250' => 'mtr', 'MELO3C004795.2' => 'cme', 'MELO3C004797.2' => 'cme', 'MELO3C007396.2' => 'cme', 'MELO3C019277.2' => 'cme', 'MELO3C021449.2' => 'cme', 'MELO3C025736.2' => 'cme', 'Migut.D02175' => 'egut', 'Migut.H01573' => 'egut', 'Migut.M01327' => 'egut', 'Migut.N02513' => 'egut', 'MSTRG.14638' => 'ama', 'MSTRG.18632' => 'ama', 'MSTRG.7203' => 'ama', 'Nitab4.5_0000533g0140' => 'nta', 'Nitab4.5_0000888g0150' => 'nta', 'Nitab4.5_0001453g0040' => 'nta', 'Nitab4.5_0002827g0090' => 'nta', 'Nitab4.5_0003082g0040' => 'nta', 'Nitab4.5_0007799g0040' => 'nta', 'Nitab4.5_0008983g0010' => 'nta', 'Nitab4.5_0009017g0020' => 'nta', 'Nn1g02132' => 'nnu', 'Nn1g03492' => 'nnu', 'Nn1g03493' => 'nnu', 'Nn1g03494' => 'nnu', 'Nn1g07164' => 'nnu', 'Nn1g07291' => 'nnu', 'Nn2g10655' => 'nnu', 'Nn2g11652' => 'nnu', 'Nn2g14008' => 'nnu', 'Nn3g17476' => 'nnu', 'Nn3g17477' => 'nnu', 'Nn4g22370' => 'nnu', 'Nn4g25255' => 'nnu', 'Nn5g27755' => 'nnu', 'Nn6g34260' => 'nnu', 'Nn6g35041' => 'nnu', 'Oeu005924.1' => 'oeu', 'Oeu008383.1' => 'oeu', 'Oeu014928.1' => 'oeu', 'Oeu019889.1' => 'oeu', 'Oeu022271.1' => 'oeu', 'Oeu025271.1' => 'oeu', 'Oeu036302.1' => 'oeu', 'Oeu044100.1' => 'oeu', 'Os01g0528300' => 'osa', 'Os03g0286200' => 'osa', 'Os04g0406600' => 'osa', 'Os07g0512000' => 'osa', 'Os07g0694600' => 'osa', 'Os08g0411000' => 'osa', 'Os09g0565700' => 'osa', 'Os09g0566050' => 'osa', 'Os10g0523700' => 'osa', 'Peaxi162Scf00002g00514' => 'pax', 'Peaxi162Scf00047g01817' => 'pax', 'Peaxi162Scf00114g00001' => 'pax', 'Peaxi162Scf00147g00613' => 'pax', 'Peaxi162Scf00389g00425' => 'pax', 'PGR042G1139' => 'pgr', 'PGR042G3273' => 'pgr', 'PGR102G2180' => 'pgr', 'PGR119G0234' => 'pgr', 'PGR119G0668' => 'pgr', 'PGSC0003DMG400007122' => 'stu', 'PGSC0003DMG400016478' => 'stu', 'PGSC0003DMG400025374' => 'stu', 'PGSC0003DMG400026536' => 'stu', 'Phvul.003G079600' => 'pvu', 'Phvul.005G115600' => 'pvu', 'Phvul.005G127100' => 'pvu', 'Phvul.006G149500' => 'pvu', 'Phvul.006G149600' => 'pvu', 'Phvul.011G071800' => 'pvu', 'Phvul.011G090400' => 'pvu', 'Potri.004G013400' => 'ptr', 'Potri.004G188100' => 'ptr', 'Potri.008G195500' => 'ptr', 'Potri.009G148800' => 'ptr', 'Potri.011G004700' => 'ptr', 'Pp3c17_22810' => 'ppa', 'Pp3c18_4480' => 'ppa', 'Pp3c19_13030' => 'ppa', 'Pp3c1_33620' => 'ppa', 'Pp3c2_9380' => 'ppa', 'PRCOL_00001023' => 'pco', 'Prupe.3G216300' => 'ppe', 'Prupe.4G019500' => 'ppe', 'Prupe.6G092500' => 'ppe', 'Prupe.6G119200' => 'ppe', 'Psat0s1945g0080' => 'psa', 'Psat0s4167g0040' => 'psa', 'Psat1g185800' => 'psa', 'Psat4g006440' => 'psa', 'Psat4g006480' => 'psa', 'Psat4g168120' => 'psa', 'Psat5g255680' => 'psa', 'Psat5g261760' => 'psa', 'Psat7g222120' => 'psa', 'PSO063G7252' => 'pso', 'PSO170G4778' => 'pso', 'PSO210G2249' => 'pso', 'PSO339G2411' => 'pso', 'PSO339G2457' => 'pso', 'PSO339G2854' => 'pso', 'PSO339G4288' => 'pso', 'PSO339G4615' => 'pso', 'PSO384G2796' => 'pso', 'PSO384G2940' => 'pso', 'PSO384G4227' => 'pso', 'PSO478G1425' => 'pso', 'PSO541G3863' => 'pso', 'PSO675G0507' => 'pso', 'PSO782G0338' => 'pso', 'PSO832G0644' => 'pso', 'QL01p013664' => 'qlo', 'QL01p036598' => 'qlo', 'QL05p072984' => 'qlo', 'QL08p005768' => 'qlo', 'QL08p032743' => 'qlo', 'QL93p0073_0439' => 'qlo', 'QL93p0073_0444' => 'qlo', 'RcHm_v2.0_Chr5g0002851' => 'rch', 'RcHm_v2.0_Chr5g0055201' => 'rch', 'RcHm_v2.0_Chr5g0061191' => 'rch', 'RcHm_v2.0_Chr7g0203231' => 'rch', 'Rhsim01G0208100' => 'rsi', 'Rhsim01G0208200' => 'rsi', 'Rhsim02G0106500' => 'rsi', 'Rhsim03G0107900' => 'rsi', 'Rhsim06G0163400' => 'rsi', 'Rhsim13G0105200' => 'rsi', 'Sabra04G0006300' => 'sbr', 'Sabra04G0127000' => 'sbr', 'Sabra08G0148700' => 'sbr', 'Sabra09G0117400' => 'sbr', 'SalBow1G3326' => 'sbo', 'SalBow3G3228' => 'sbo', 'SalBow6G1634' => 'sbo', 'SalBow6G3603' => 'sbo', 'SalBow6G5266' => 'sbo', 'SalBow7G2265' => 'sbo', 'SalBow8G0850' => 'sbo', 'SalBow8G2592' => 'sbo', 'Sc05g0009240' => 'sci', 'Sc12g0002300' => 'sci', 'Sc21g0000100' => 'sci', 'Sc21g0004720' => 'sci', 'Sed0002949' => 'sed', 'Sed0004114' => 'sed', 'Sed0004306' => 'sed', 'Sed0006172' => 'sed', 'Sed0008413' => 'sed', 'Sed0013809' => 'sed', 'Sed0019556' => 'sed', 'SEGI_03570' => 'sgi', 'SEGI_07859' => 'sgi', 'SEGI_15042' => 'sgi', 'SEGI_16263' => 'sgi', 'SEGI_16552' => 'sgi', 'SEGI_24331' => 'sgi', 'SEGI_27316' => 'sgi', 'SEGI_29521' => 'sgi', 'SEGI_41342' => 'sgi', 'SGA_v2.0_scaffold27G11617' => 'sas', 'SGA_v2.0_scaffold316G48428' => 'sas', 'SGA_v2.0_scaffold49G18261' => 'sas', 'SGA_v2.0_scaffold7G03831' => 'sas', 'SGA_v2.0_scaffold93G28359' => 'sas', 'SHI02210' => 'shi', 'SHI06028' => 'shi', 'SHI06321' => 'shi', 'SMO111G0012' => 'smo', 'SMO228G0080' => 'smo', 'SMO356G0756' => 'smo', 'Solyc02g080620.3' => 'sly', 'Solyc06g074530.1' => 'sly', 'Solyc11g066890.1' => 'sly', 'Solyc11g072520.3' => 'sly', 'Sopen02g025330' => 'spe', 'Sopen06g031000' => 'spe', 'Sopen09g008240' => 'spe', 'Sopen09g025210' => 'spe', 'Sopen11g026600' => 'spe', 'Sopen11g030170' => 'spe', 'Sp1g10420' => 'spa', 'Sp3g06570' => 'spa', 'Sp4g10660' => 'spa', 'Sp5g16460' => 'spa', 'Sp6g22710' => 'spa', 'TAR365G0112' => 'tar', 'TAR369G0717' => 'tar', 'TAR374G0976' => 'tar', 'TAR623G1128' => 'tar', 'TAR626G1937' => 'tar', 'TAR627G0123' => 'tar', 'TAR628G0305' => 'tar', 'TAR636G1176' => 'tar', 'TAR636G2442' => 'tar', 'THA.LOC104800556' => 'tha', 'THA.LOC104809501' => 'tha', 'THA.LOC104815126' => 'tha', 'THA.LOC104815732' => 'tha', 'THA.LOC104823528' => 'tha', 'Thecc.02G365600' => 'tca', 'Thecc.06G222300' => 'tca', 'Thecc.09G261800' => 'tca', 'Thecc.09G291400' => 'tca', 'Thhalv10003028m.g' => 'esa', 'Thhalv10007886m.g' => 'esa', 'Thhalv10016085m.g' => 'esa', 'Thhalv10016681m.g' => 'esa', 'Thhalv10020951m.g' => 'esa', 'TPR.G15598' => 'tpr', 'TPR.G29305' => 'tpr', 'TPR.G32395' => 'tpr', 'TPR.G36998' => 'tpr', 'TPR.G4227' => 'tpr', 'TWI18G1433' => 'twi', 'TWI31G0755' => 'twi', 'TWI38G0912' => 'twi', 'TWI75G1097' => 'twi', 'TWI75G1619' => 'twi', 'TWI79G1336' => 'twi', 'unitig_0.g943' => 'ugi', 'unitig_0.g944' => 'ugi', 'unitig_22.g6646' => 'ugi', 'unitig_37.g12681' => 'ugi', 'unitig_8.g3290' => 'ugi', 'vmacro03278' => 'vma', 'vmacro12197' => 'vma', 'vmacro14478' => 'vma', 'vmacro15787' => 'vma', 'vmacro15789' => 'vma', 'vmacro15790' => 'vma', 'vmacro15806' => 'vma', 'vmacro22907' => 'vma', 'vmacro22908' => 'vma', 'vmacro22909' => 'vma', 'vmacro23108' => 'vma', 'VMungo0540G0540' => 'vmu', 'VMungo0540G2468' => 'vmu', 'VMungo1080G0390' => 'vmu', 'VMungo1080G1165' => 'vmu', 'VMungo1127G0170' => 'vmu', 'VMungo1127G2099' => 'vmu', 'VMungo1215G3013' => 'vmu', 'Zm00001eb013110' => 'zma', 'Zm00001eb084260' => 'zma', 'Zm00001eb096110' => 'zma', 'Zm00001eb217510' => 'zma', 'Zm00001eb322550' => 'zma', 'Zm00001eb390770' => 'zma', 'Zm00001eb397170' => 'zma', 'Zm00001eb404610' => 'zma', 'Zm00001eb421790' => 'zma' ), 'gf_id' => 'HOM05D000911', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000911' ), 'data_identifier' => 'HOM05D000911', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000911', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27780' => 'bna', 'A03p35380' => 'bna', 'A04p21160' => 'bna', 'A05p40570' => 'bna', 'A06p26900' => 'bna', 'A08p33230' => 'bna', 'A09p65960' => 'bna', 'A10p18290' => 'bna', 'Aa31LG1G12990' => 'aar', 'Aa31LG1G2980' => 'aar', 'Aa31LG4G14320' => 'aar', 'Aa31LG7G11800' => 'aar', 'Aa31sc36G50' => 'aar', 'Aa31sc36G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3721' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5459' => 'aag', 'Actinidia03028' => 'ach', 'Actinidia03753' => 'ach', 'Actinidia04187' => 'ach', 'Actinidia05509' => 'ach', 'Actinidia24180' => 'ach', 'Actinidia26906' => 'ach', 'Actinidia37097' => 'ach', 'Actinidia38249' => 'ach', 'Ah.01g003470' => 'amhyb', 'Ah.01g004580' => 'amhyb', 'Ah.01g014850' => 'amhyb', 'Ah.01g016830' => 'amhyb', 'Ah.14g088000' => 'amhyb', 'AL1G22980' => 'aly', 'AL3G18990' => 'aly', 'AL4G22440' => 'aly', 'AL4G33180' => 'aly', 'AL5G22920' => 'aly', 'AL6G33660' => 'aly', 'AL8G20720' => 'aly', 'Aqoxy1G00935' => 'aox', 'Aqoxy1G02094' => 'aox', 'Aqoxy2G01239' => 'aox', 'Aqoxy4G01870' => 'aox', 'Aqoxy7G00450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.36ZVTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71EM27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5D6C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH3WRE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3NCM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RIM768' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YB5YRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z36GDV' => 'arhy', 'AT1G08250' => 'ath', 'AT1G11790' => 'ath', 'AT2G27820' => 'ath', 'AT3G07630' => 'ath', 'AT3G44720' => 'ath', 'AT5G22630' => 'ath', 'ATR0693G304' => 'atr', 'ATR0794G109' => 'atr', 'ATR0820G120' => 'atr', 'ATR1159G064' => 'atr', 'Atru.chr10.2239' => 'acertr', 'Atru.chr3.3371' => 'acertr', 'Atru.chr6.3202' => 'acertr', 'AUR62006499' => 'cqu', 'AUR62012718' => 'cqu', 'AUR62021938' => 'cqu', 'AUR62023932' => 'cqu', 'AUR62025034' => 'cqu', 'AUR62025035' => 'cqu', 'AUR62038307' => 'cqu', 'AUR62043466' => 'cqu', 'BcaB02g10748' => 'bca', 'BcaB03g13231' => 'bca', 'BcaB03g14689' => 'bca', 'BcaB05g22716' => 'bca', 'BcaB06g28172' => 'bca', 'BcaB08g36413' => 'bca', 'BcaC01g02186' => 'bca', 'BcaC01g04272' => 'bca', 'BcaC02g08080' => 'bca', 'BcaC02g08227' => 'bca', 'BcaC03g13901' => 'bca', 'BcaC04g19593' => 'bca', 'BcaC04g20874' => 'bca', 'BcaC05g29557' => 'bca', 'BcaC06g35505' => 'bca', 'BcaC07g41954' => 'bca', 'BcaC07g41955' => 'bca', 'BcaC07g41956' => 'bca', 'BcaC07g42519' => 'bca', 'BcaC07g42520' => 'bca', 'BcaC07g42523' => 'bca', 'BcaC07g42524' => 'bca', 'BcaC07g42525' => 'bca', 'BcaC08g47480' => 'bca', 'BcaC08g47481' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00530' => 'bna', 'BolC2t07178H' => 'bol', 'BolC3t16567H' => 'bol', 'BolC4t27234H' => 'bol', 'BolC5t29728H' => 'bol', 'BolC5t34622H' => 'bol', 'BolC6t40321H' => 'bol', 'BolC7t42028H' => 'bol', 'BolC8t49125H' => 'bol', 'BolC8t52538H' => 'bol', 'BolC8t52539H' => 'bol', 'BolC9t56681H' => 'bol', 'BolC9t58266H' => 'bol', 'BolSC21t60294H' => 'bol', 'BraA02t05670Z' => 'bra', 'BraA03t12716Z' => 'bra', 'BraA04t17685Z' => 'bra', 'BraA05t22788Z' => 'bra', 'BraA06t24032Z' => 'bra', 'BraA06t25625Z' => 'bra', 'BraA07t27930Z' => 'bra', 'BraA08t35242Z' => 'bra', 'BraA09t38609Z' => 'bra', 'BraA10t43905Z' => 'bra', 'C02p11060' => 'bna', 'C03p42990' => 'bna', 'C03p67310' => 'bna', 'C04p56990' => 'bna', 'C04p58660' => 'bna', 'C05p09890' => 'bna', 'C05p59680' => 'bna', 'C06p19830' => 'bna', 'C06p53040' => 'bna', 'C07p15230' => 'bna', 'C08p50070' => 'bna', 'C08p50090' => 'bna', 'C09p38330' => 'bna', 'C09p53940' => 'bna', 'CAN.G1014.1' => 'can', 'CAN.G644.30' => 'can', 'CAN.G84.47' => 'can', 'CAN.G919.8' => 'can', 'CANSAT54G0113' => 'cansat', 'CANSAT54G1286' => 'cansat', 'CANSAT64G1020' => 'cansat', 'CARHR008080' => 'chi', 'CARHR008090' => 'chi', 'CARHR012130' => 'chi', 'CARHR038390' => 'chi', 'CARHR082330' => 'chi', 'CARHR120520' => 'chi', 'CARHR151470' => 'chi', 'CARHR190950' => 'chi', 'Carub.0001s0760' => 'cru', 'Carub.0001s1146' => 'cru', 'Carub.0003s0721' => 'cru', 'Carub.0004s0858' => 'cru', 'Carub.0005s1040' => 'cru', 'Carub.0006s2035' => 'cru', 'Carub.0015s0005' => 'cru', 'Ca_01607_v3' => 'car', 'Ca_01677_v3' => 'car', 'Ca_06087_v3' => 'car', 'Ca_19238_v3' => 'car', 'Ca_19373_v3' => 'car', 'Ca_21079_v3' => 'car', 'CBR_g54016' => 'cbr', 'CBR_g54018' => 'cbr', 'CBR_g54020' => 'cbr', 'Cc01_g09780' => 'ccan', 'Cc01_g11680' => 'ccan', 'Cc02_g15610' => 'ccan', 'Cc05_g04350' => 'ccan', 'Cc09_g01580' => 'ccan', 'CDE01G0795' => 'cde', 'CDE02G2024' => 'cde', 'CDE02G2260' => 'cde', 'CDE02G4561' => 'cde', 'CDE05G2733' => 'cde', 'CDE05G3422' => 'cde', 'CDE06G2003' => 'cde', 'CDE08G0576' => 'cde', 'CDE09G0048' => 'cde', 'CDE11G0805' => 'cde', 'Cfa003644' => 'cfa', 'Cfa006290' => 'cfa', 'Cfa010080' => 'cfa', 'Cfa011376' => 'cfa', 'Cfa011576' => 'cfa', 'Cfa011577' => 'cfa', 'Cfa014389' => 'cfa', 'Ciclev10006044m.g' => 'ccl', 'Ciclev10006954m.g' => 'ccl', 'Ciclev10015131m.g' => 'ccl', 'Ciclev10015580m.g' => 'ccl', 'Ciclev10028359m.g' => 'ccl', 'Ciclev10028573m.g' => 'ccl', 'CiPaw.03G159300' => 'cil', 'CiPaw.04G115100' => 'cil', 'CiPaw.09G092800' => 'cil', 'CiPaw.10G071800' => 'cil', 'CiPaw.13G105800' => 'cil', 'CiPaw.13G141000' => 'cil', 'CiPaw.14G103400' => 'cil', 'ClCG01G012700' => 'cla', 'ClCG01G012720' => 'cla', 'ClCG01G021920' => 'cla', 'ClCG02G008870' => 'cla', 'ClCG02G020840' => 'cla', 'ClCG02G021930' => 'cla', 'COL.COLO4_19302' => 'col', 'COL.COLO4_25262' => 'col', 'COL.COLO4_31788' => 'col', 'Cpa.g.c34684' => 'cpa', 'Cpa.g.c36520.1' => 'cpa', 'Cpa.g.c45626' => 'cpa', 'Cpa.g.sc121.17' => 'cpa', 'Cpa.g.sc13.22' => 'cpa', 'Cpa.g.sc87.88' => 'cpa', 'Cre06.g261800' => 'cre', 'CsaV3_1G014500' => 'csa', 'CsaV3_1G014510' => 'csa', 'CsaV3_2G034880' => 'csa', 'CsaV3_6G014760' => 'csa', 'CsaV3_6G021500' => 'csa', 'CsaV3_6G048980' => 'csa', 'CSS0002511' => 'camsi', 'CSS0007556' => 'camsi', 'CSS0008532' => 'camsi', 'CSS0009709' => 'camsi', 'CSS0010486' => 'camsi', 'CSS0016768' => 'camsi', 'CSS0023512' => 'camsi', 'CSS0025341' => 'camsi', 'CSS0027999' => 'camsi', 'CSS0028944' => 'camsi', 'CSS0032292' => 'camsi', 'CSS0032464' => 'camsi', 'CSS0037153' => 'camsi', 'CSS0039256' => 'camsi', 'CSS0048392' => 'camsi', 'CSS0050458' => 'camsi', 'DCAR_004224' => 'dca', 'DCAR_006147' => 'dca', 'DCAR_006465' => 'dca', 'DCAR_008159' => 'dca', 'DCAR_012164' => 'dca', 'DCAR_019764' => 'dca', 'Dinv05418' => 'din', 'Dinv10839' => 'din', 'Dinv12521' => 'din', 'Dinv13900' => 'din', 'Dinv29426' => 'din', 'Duzib150G0263' => 'dzi', 'Duzib168G1178' => 'dzi', 'Duzib168G1924' => 'dzi', 'Duzib170G0299' => 'dzi', 'Duzib170G0813' => 'dzi', 'Duzib235G1128' => 'dzi', 'Duzib248G1060' => 'dzi', 'ECA232G1910' => 'eca', 'ECA233G4621' => 'eca', 'ECA238G1216' => 'eca', 'ECA238G1784' => 'eca', 'ECA248G1242' => 'eca', 'EL10Ac8g20071' => 'bvu', 'EL10Ac9g21086' => 'bvu', 'EL10Ac9g22407' => 'bvu', 'EL10Ac9g22412' => 'bvu', 'Eucgr.A01119' => 'egr', 'Eucgr.E04043' => 'egr', 'Eucgr.J00428' => 'egr', 'Eucgr.J00958' => 'egr', 'FAN11G3091' => 'fan', 'FAN11G3651' => 'fan', 'FAN16G2566' => 'fan', 'FAN21G3155' => 'fan', 'FAN21G3400' => 'fan', 'FAN21G3543' => 'fan', 'FAN25G0234' => 'fan', 'FAN25G1422' => 'fan', 'FAN25G3392' => 'fan', 'FvH4_3g01940' => 'fve', 'FvH4_3g29870' => 'fve', 'FvH4_3g33680' => 'fve', 'Glyma.09G004200' => 'gma', 'Glyma.11G151288' => 'gma', 'Glyma.11G189100' => 'gma', 'Glyma.12G072500' => 'gma', 'Glyma.12G085500' => 'gma', 'Glyma.12G181800' => 'gma', 'Glyma.12G193000' => 'gma', 'Glyma.13G309300' => 'gma', 'Glyma.13G319000' => 'gma', 'Glyma.17G012600' => 'gma', 'Gohir.A06G148600' => 'ghi', 'Gohir.A07G115800' => 'ghi', 'Gohir.A08G003600' => 'ghi', 'Gohir.A09G093300' => 'ghi', 'Gohir.A09G105400' => 'ghi', 'Gohir.A09G105500' => 'ghi', 'Gohir.D06G154600' => 'ghi', 'Gohir.D07G120200' => 'ghi', 'Gohir.D08G013900' => 'ghi', 'Gohir.D09G093100' => 'ghi', 'Gohir.D09G102200' => 'ghi', 'Gohir.D09G102300' => 'ghi', 'Gorai.001G129400' => 'gra', 'Gorai.004G008200' => 'gra', 'Gorai.006G109800' => 'gra', 'Gorai.006G119500' => 'gra', 'Gorai.006G121300' => 'gra', 'Gorai.010G180700' => 'gra', 'GSVIVG01012716001' => 'vvi', 'GSVIVG01025118001' => 'vvi', 'GSVIVG01030439001' => 'vvi', 'GSVIVG01031397001' => 'vvi', 'HanXRQChr01g0004201' => 'han', 'HanXRQChr02g0054941' => 'han', 'HanXRQChr05g0141811' => 'han', 'HanXRQChr07g0197751' => 'han', 'HanXRQChr11g0346691' => 'han', 'HanXRQChr13g0396971' => 'han', 'HanXRQChr14g0432951' => 'han', 'HanXRQChr14g0452001' => 'han', 'HanXRQChr15g0496681' => 'han', 'HanXRQChr17g0557491' => 'han', 'HanXRQChr17g0557501' => 'han', 'Haze_06809' => 'cav', 'Haze_12852' => 'cav', 'Haze_15850' => 'cav', 'Haze_23446' => 'cav', 'Haze_23942' => 'cav', 'Haze_23943' => 'cav', 'Hma1.2p1_0091F.1_g046450' => 'hma', 'Hma1.2p1_0128F.1_g059910' => 'hma', 'Hma1.2p1_0249F.1_g102260' => 'hma', 'Hma1.2p1_0453F.1_g156190' => 'hma', 'Hma1.2p1_0695F.1_g204380' => 'hma', 'Hma1.2p1_0749F.1_g212650' => 'hma', 'Hma1.2p1_2156F.1_g315420' => 'hma', 'Hma1.2p1_2686F.1_g326940' => 'hma', 'HPP92_006428' => 'vpl', 'HPP92_012069' => 'vpl', 'HPP92_014129' => 'vpl', 'HPP92_014133' => 'vpl', 'HPP92_017315' => 'vpl', 'HPP92_026445' => 'vpl', 'HPP92_026446' => 'vpl', 'Hund00774' => 'sun', 'Hund07682' => 'sun', 'Hund21413' => 'sun', 'Hund23462' => 'sun', 'Hund23463' => 'sun', 'Lalb_Chr03g0027911' => 'lal', 'Lalb_Chr13g0304271' => 'lal', 'Lalb_Chr19g0137471' => 'lal', 'Lalb_Chr22g0350651' => 'lal', 'Lalb_Chr24g0395151' => 'lal', 'Lj1A1231T40' => 'lonja', 'Lj1A221T48' => 'lonja', 'Lj1C924T12' => 'lonja', 'Lj2C993G6' => 'lonja', 'Lj3g0005790' => 'lja', 'Lj3g0015432' => 'lja', 'Lj3g0017722' => 'lja', 'Lj3g0018497' => 'lja', 'Lj4g0025071' => 'lja', 'Lsat_1_v5_gn_1_129680' => 'lsa', 'Lsat_1_v5_gn_2_25321' => 'lsa', 'Lsat_1_v5_gn_2_95461' => 'lsa', 'Lsat_1_v5_gn_4_159620' => 'lsa', 'Lsat_1_v5_gn_6_41301' => 'lsa', 'Lsat_1_v5_gn_6_74660' => 'lsa', 'Lsat_1_v5_gn_7_11520' => 'lsa', 'Lsat_1_v5_gn_9_67680' => 'lsa', 'Manes.04G008300' => 'mes', 'Manes.04G008400' => 'mes', 'Manes.04G026500' => 'mes', 'Manes.10G135300' => 'mes', 'Manes.11G157300' => 'mes', 'Manes.12G074000' => 'mes', 'Manes.16G006200' => 'mes', 'Manes.17G026400' => 'mes', 'Mapoly0024s0086' => 'mpo', 'Mapoly0024s0087' => 'mpo', 'Mapoly0071s0057' => 'mpo', 'Mapoly0204s0012' => 'mpo', 'MBI04_g37681_MAGBIO' => 'mbi', 'MBI05_g17779_MAGBIO' => 'mbi', 'MBI12_g31184_MAGBIO' => 'mbi', 'MBI17_g11083_MAGBIO' => 'mbi', 'MBI18_g03883_MAGBIO' => 'mbi', 'MBI18_g28940_MAGBIO' => 'mbi', 'MCO01G690' => 'mco', 'MD03G1109900' => 'mdo', 'MD03G1134800' => 'mdo', 'MD05G1348000' => 'mdo', 'MD10G1322400' => 'mdo', 'MD11G1123300' => 'mdo', 'MD11G1157600' => 'mdo', 'Medtr2g084875' => 'mtr', 'Medtr2g088130' => 'mtr', 'Medtr4g055310' => 'mtr', 'Medtr4g061070' => 'mtr', 'Medtr4g132250' => 'mtr', 'MELO3C004795.2' => 'cme', 'MELO3C004797.2' => 'cme', 'MELO3C007396.2' => 'cme', 'MELO3C019277.2' => 'cme', 'MELO3C021449.2' => 'cme', 'MELO3C025736.2' => 'cme', 'Migut.D02175' => 'egut', 'Migut.H01573' => 'egut', 'Migut.M01327' => 'egut', 'Migut.N02513' => 'egut', 'MSTRG.14638' => 'ama', 'MSTRG.18632' => 'ama', 'MSTRG.7203' => 'ama', 'Nitab4.5_0000533g0140' => 'nta', 'Nitab4.5_0000888g0150' => 'nta', 'Nitab4.5_0001453g0040' => 'nta', 'Nitab4.5_0002827g0090' => 'nta', 'Nitab4.5_0003082g0040' => 'nta', 'Nitab4.5_0007799g0040' => 'nta', 'Nitab4.5_0008983g0010' => 'nta', 'Nitab4.5_0009017g0020' => 'nta', 'Nn1g02132' => 'nnu', 'Nn1g03492' => 'nnu', 'Nn1g03493' => 'nnu', 'Nn1g03494' => 'nnu', 'Nn1g07164' => 'nnu', 'Nn1g07291' => 'nnu', 'Nn2g10655' => 'nnu', 'Nn2g11652' => 'nnu', 'Nn2g14008' => 'nnu', 'Nn3g17476' => 'nnu', 'Nn3g17477' => 'nnu', 'Nn4g22370' => 'nnu', 'Nn4g25255' => 'nnu', 'Nn5g27755' => 'nnu', 'Nn6g34260' => 'nnu', 'Nn6g35041' => 'nnu', 'Oeu005924.1' => 'oeu', 'Oeu008383.1' => 'oeu', 'Oeu014928.1' => 'oeu', 'Oeu019889.1' => 'oeu', 'Oeu022271.1' => 'oeu', 'Oeu025271.1' => 'oeu', 'Oeu036302.1' => 'oeu', 'Oeu044100.1' => 'oeu', 'Os01g0528300' => 'osa', 'Os03g0286200' => 'osa', 'Os04g0406600' => 'osa', 'Os07g0512000' => 'osa', 'Os07g0694600' => 'osa', 'Os08g0411000' => 'osa', 'Os09g0565700' => 'osa', 'Os09g0566050' => 'osa', 'Os10g0523700' => 'osa', 'Peaxi162Scf00002g00514' => 'pax', 'Peaxi162Scf00047g01817' => 'pax', 'Peaxi162Scf00114g00001' => 'pax', 'Peaxi162Scf00147g00613' => 'pax', 'Peaxi162Scf00389g00425' => 'pax', 'PGR042G1139' => 'pgr', 'PGR042G3273' => 'pgr', 'PGR102G2180' => 'pgr', 'PGR119G0234' => 'pgr', 'PGR119G0668' => 'pgr', 'PGSC0003DMG400007122' => 'stu', 'PGSC0003DMG400016478' => 'stu', 'PGSC0003DMG400025374' => 'stu', 'PGSC0003DMG400026536' => 'stu', 'Phvul.003G079600' => 'pvu', 'Phvul.005G115600' => 'pvu', 'Phvul.005G127100' => 'pvu', 'Phvul.006G149500' => 'pvu', 'Phvul.006G149600' => 'pvu', 'Phvul.011G071800' => 'pvu', 'Phvul.011G090400' => 'pvu', 'Potri.004G013400' => 'ptr', 'Potri.004G188100' => 'ptr', 'Potri.008G195500' => 'ptr', 'Potri.009G148800' => 'ptr', 'Potri.011G004700' => 'ptr', 'Pp3c17_22810' => 'ppa', 'Pp3c18_4480' => 'ppa', 'Pp3c19_13030' => 'ppa', 'Pp3c1_33620' => 'ppa', 'Pp3c2_9380' => 'ppa', 'PRCOL_00001023' => 'pco', 'Prupe.3G216300' => 'ppe', 'Prupe.4G019500' => 'ppe', 'Prupe.6G092500' => 'ppe', 'Prupe.6G119200' => 'ppe', 'Psat0s1945g0080' => 'psa', 'Psat0s4167g0040' => 'psa', 'Psat1g185800' => 'psa', 'Psat4g006440' => 'psa', 'Psat4g006480' => 'psa', 'Psat4g168120' => 'psa', 'Psat5g255680' => 'psa', 'Psat5g261760' => 'psa', 'Psat7g222120' => 'psa', 'PSO063G7252' => 'pso', 'PSO170G4778' => 'pso', 'PSO210G2249' => 'pso', 'PSO339G2411' => 'pso', 'PSO339G2457' => 'pso', 'PSO339G2854' => 'pso', 'PSO339G4288' => 'pso', 'PSO339G4615' => 'pso', 'PSO384G2796' => 'pso', 'PSO384G2940' => 'pso', 'PSO384G4227' => 'pso', 'PSO478G1425' => 'pso', 'PSO541G3863' => 'pso', 'PSO675G0507' => 'pso', 'PSO782G0338' => 'pso', 'PSO832G0644' => 'pso', 'QL01p013664' => 'qlo', 'QL01p036598' => 'qlo', 'QL05p072984' => 'qlo', 'QL08p005768' => 'qlo', 'QL08p032743' => 'qlo', 'QL93p0073_0439' => 'qlo', 'QL93p0073_0444' => 'qlo', 'RcHm_v2.0_Chr5g0002851' => 'rch', 'RcHm_v2.0_Chr5g0055201' => 'rch', 'RcHm_v2.0_Chr5g0061191' => 'rch', 'RcHm_v2.0_Chr7g0203231' => 'rch', 'Rhsim01G0208100' => 'rsi', 'Rhsim01G0208200' => 'rsi', 'Rhsim02G0106500' => 'rsi', 'Rhsim03G0107900' => 'rsi', 'Rhsim06G0163400' => 'rsi', 'Rhsim13G0105200' => 'rsi', 'Sabra04G0006300' => 'sbr', 'Sabra04G0127000' => 'sbr', 'Sabra08G0148700' => 'sbr', 'Sabra09G0117400' => 'sbr', 'SalBow1G3326' => 'sbo', 'SalBow3G3228' => 'sbo', 'SalBow6G1634' => 'sbo', 'SalBow6G3603' => 'sbo', 'SalBow6G5266' => 'sbo', 'SalBow7G2265' => 'sbo', 'SalBow8G0850' => 'sbo', 'SalBow8G2592' => 'sbo', 'Sc05g0009240' => 'sci', 'Sc12g0002300' => 'sci', 'Sc21g0000100' => 'sci', 'Sc21g0004720' => 'sci', 'Sed0002949' => 'sed', 'Sed0004114' => 'sed', 'Sed0004306' => 'sed', 'Sed0006172' => 'sed', 'Sed0008413' => 'sed', 'Sed0013809' => 'sed', 'Sed0019556' => 'sed', 'SEGI_03570' => 'sgi', 'SEGI_07859' => 'sgi', 'SEGI_15042' => 'sgi', 'SEGI_16263' => 'sgi', 'SEGI_16552' => 'sgi', 'SEGI_24331' => 'sgi', 'SEGI_27316' => 'sgi', 'SEGI_29521' => 'sgi', 'SEGI_41342' => 'sgi', 'SGA_v2.0_scaffold27G11617' => 'sas', 'SGA_v2.0_scaffold316G48428' => 'sas', 'SGA_v2.0_scaffold49G18261' => 'sas', 'SGA_v2.0_scaffold7G03831' => 'sas', 'SGA_v2.0_scaffold93G28359' => 'sas', 'SHI02210' => 'shi', 'SHI06028' => 'shi', 'SHI06321' => 'shi', 'SMO111G0012' => 'smo', 'SMO228G0080' => 'smo', 'SMO356G0756' => 'smo', 'Solyc02g080620.3' => 'sly', 'Solyc06g074530.1' => 'sly', 'Solyc11g066890.1' => 'sly', 'Solyc11g072520.3' => 'sly', 'Sopen02g025330' => 'spe', 'Sopen06g031000' => 'spe', 'Sopen09g008240' => 'spe', 'Sopen09g025210' => 'spe', 'Sopen11g026600' => 'spe', 'Sopen11g030170' => 'spe', 'Sp1g10420' => 'spa', 'Sp3g06570' => 'spa', 'Sp4g10660' => 'spa', 'Sp5g16460' => 'spa', 'Sp6g22710' => 'spa', 'TAR365G0112' => 'tar', 'TAR369G0717' => 'tar', 'TAR374G0976' => 'tar', 'TAR623G1128' => 'tar', 'TAR626G1937' => 'tar', 'TAR627G0123' => 'tar', 'TAR628G0305' => 'tar', 'TAR636G1176' => 'tar', 'TAR636G2442' => 'tar', 'THA.LOC104800556' => 'tha', 'THA.LOC104809501' => 'tha', 'THA.LOC104815126' => 'tha', 'THA.LOC104815732' => 'tha', 'THA.LOC104823528' => 'tha', 'Thecc.02G365600' => 'tca', 'Thecc.06G222300' => 'tca', 'Thecc.09G261800' => 'tca', 'Thecc.09G291400' => 'tca', 'Thhalv10003028m.g' => 'esa', 'Thhalv10007886m.g' => 'esa', 'Thhalv10016085m.g' => 'esa', 'Thhalv10016681m.g' => 'esa', 'Thhalv10020951m.g' => 'esa', 'TPR.G15598' => 'tpr', 'TPR.G29305' => 'tpr', 'TPR.G32395' => 'tpr', 'TPR.G36998' => 'tpr', 'TPR.G4227' => 'tpr', 'TWI18G1433' => 'twi', 'TWI31G0755' => 'twi', 'TWI38G0912' => 'twi', 'TWI75G1097' => 'twi', 'TWI75G1619' => 'twi', 'TWI79G1336' => 'twi', 'unitig_0.g943' => 'ugi', 'unitig_0.g944' => 'ugi', 'unitig_22.g6646' => 'ugi', 'unitig_37.g12681' => 'ugi', 'unitig_8.g3290' => 'ugi', 'vmacro03278' => 'vma', 'vmacro12197' => 'vma', 'vmacro14478' => 'vma', 'vmacro15787' => 'vma', 'vmacro15789' => 'vma', 'vmacro15790' => 'vma', 'vmacro15806' => 'vma', 'vmacro22907' => 'vma', 'vmacro22908' => 'vma', 'vmacro22909' => 'vma', 'vmacro23108' => 'vma', 'VMungo0540G0540' => 'vmu', 'VMungo0540G2468' => 'vmu', 'VMungo1080G0390' => 'vmu', 'VMungo1080G1165' => 'vmu', 'VMungo1127G0170' => 'vmu', 'VMungo1127G2099' => 'vmu', 'VMungo1215G3013' => 'vmu', 'Zm00001eb013110' => 'zma', 'Zm00001eb084260' => 'zma', 'Zm00001eb096110' => 'zma', 'Zm00001eb217510' => 'zma', 'Zm00001eb322550' => 'zma', 'Zm00001eb390770' => 'zma', 'Zm00001eb397170' => 'zma', 'Zm00001eb404610' => 'zma', 'Zm00001eb421790' => 'zma' ) $gf_id = 'HOM05D000911' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000911' ) $data_identifier = 'HOM05D000911' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 16, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 5, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 6, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 8, 'nnu' => (int) 16, 'oeu' => (int) 8, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 5, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 16, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421790' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000911', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27780' => 'bna', 'A03p35380' => 'bna', 'A04p21160' => 'bna', 'A05p40570' => 'bna', 'A06p26900' => 'bna', 'A08p33230' => 'bna', 'A09p65960' => 'bna', 'A10p18290' => 'bna', 'Aa31LG1G12990' => 'aar', 'Aa31LG1G2980' => 'aar', 'Aa31LG4G14320' => 'aar', 'Aa31LG7G11800' => 'aar', 'Aa31sc36G50' => 'aar', 'Aa31sc36G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3721' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5459' => 'aag', 'Actinidia03028' => 'ach', 'Actinidia03753' => 'ach', 'Actinidia04187' => 'ach', 'Actinidia05509' => 'ach', 'Actinidia24180' => 'ach', 'Actinidia26906' => 'ach', 'Actinidia37097' => 'ach', 'Actinidia38249' => 'ach', 'Ah.01g003470' => 'amhyb', 'Ah.01g004580' => 'amhyb', 'Ah.01g014850' => 'amhyb', 'Ah.01g016830' => 'amhyb', 'Ah.14g088000' => 'amhyb', 'AL1G22980' => 'aly', 'AL3G18990' => 'aly', 'AL4G22440' => 'aly', 'AL4G33180' => 'aly', 'AL5G22920' => 'aly', 'AL6G33660' => 'aly', 'AL8G20720' => 'aly', 'Aqoxy1G00935' => 'aox', 'Aqoxy1G02094' => 'aox', 'Aqoxy2G01239' => 'aox', 'Aqoxy4G01870' => 'aox', 'Aqoxy7G00450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.36ZVTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71EM27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5D6C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH3WRE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3NCM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RIM768' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YB5YRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z36GDV' => 'arhy', 'AT1G08250' => 'ath', 'AT1G11790' => 'ath', 'AT2G27820' => 'ath', 'AT3G07630' => 'ath', 'AT3G44720' => 'ath', 'AT5G22630' => 'ath', 'ATR0693G304' => 'atr', 'ATR0794G109' => 'atr', 'ATR0820G120' => 'atr', 'ATR1159G064' => 'atr', 'Atru.chr10.2239' => 'acertr', 'Atru.chr3.3371' => 'acertr', 'Atru.chr6.3202' => 'acertr', 'AUR62006499' => 'cqu', 'AUR62012718' => 'cqu', 'AUR62021938' => 'cqu', 'AUR62023932' => 'cqu', 'AUR62025034' => 'cqu', 'AUR62025035' => 'cqu', 'AUR62038307' => 'cqu', 'AUR62043466' => 'cqu', 'BcaB02g10748' => 'bca', 'BcaB03g13231' => 'bca', 'BcaB03g14689' => 'bca', 'BcaB05g22716' => 'bca', 'BcaB06g28172' => 'bca', 'BcaB08g36413' => 'bca', 'BcaC01g02186' => 'bca', 'BcaC01g04272' => 'bca', 'BcaC02g08080' => 'bca', 'BcaC02g08227' => 'bca', 'BcaC03g13901' => 'bca', 'BcaC04g19593' => 'bca', 'BcaC04g20874' => 'bca', 'BcaC05g29557' => 'bca', 'BcaC06g35505' => 'bca', 'BcaC07g41954' => 'bca', 'BcaC07g41955' => 'bca', 'BcaC07g41956' => 'bca', 'BcaC07g42519' => 'bca', 'BcaC07g42520' => 'bca', 'BcaC07g42523' => 'bca', 'BcaC07g42524' => 'bca', 'BcaC07g42525' => 'bca', 'BcaC08g47480' => 'bca', 'BcaC08g47481' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00530' => 'bna', 'BolC2t07178H' => 'bol', 'BolC3t16567H' => 'bol', 'BolC4t27234H' => 'bol', 'BolC5t29728H' => 'bol', 'BolC5t34622H' => 'bol', 'BolC6t40321H' => 'bol', 'BolC7t42028H' => 'bol', 'BolC8t49125H' => 'bol', 'BolC8t52538H' => 'bol', 'BolC8t52539H' => 'bol', 'BolC9t56681H' => 'bol', 'BolC9t58266H' => 'bol', 'BolSC21t60294H' => 'bol', 'BraA02t05670Z' => 'bra', 'BraA03t12716Z' => 'bra', 'BraA04t17685Z' => 'bra', 'BraA05t22788Z' => 'bra', 'BraA06t24032Z' => 'bra', 'BraA06t25625Z' => 'bra', 'BraA07t27930Z' => 'bra', 'BraA08t35242Z' => 'bra', 'BraA09t38609Z' => 'bra', 'BraA10t43905Z' => 'bra', 'C02p11060' => 'bna', 'C03p42990' => 'bna', 'C03p67310' => 'bna', 'C04p56990' => 'bna', 'C04p58660' => 'bna', 'C05p09890' => 'bna', 'C05p59680' => 'bna', 'C06p19830' => 'bna', 'C06p53040' => 'bna', 'C07p15230' => 'bna', 'C08p50070' => 'bna', 'C08p50090' => 'bna', 'C09p38330' => 'bna', 'C09p53940' => 'bna', 'CAN.G1014.1' => 'can', 'CAN.G644.30' => 'can', 'CAN.G84.47' => 'can', 'CAN.G919.8' => 'can', 'CANSAT54G0113' => 'cansat', 'CANSAT54G1286' => 'cansat', 'CANSAT64G1020' => 'cansat', 'CARHR008080' => 'chi', 'CARHR008090' => 'chi', 'CARHR012130' => 'chi', 'CARHR038390' => 'chi', 'CARHR082330' => 'chi', 'CARHR120520' => 'chi', 'CARHR151470' => 'chi', 'CARHR190950' => 'chi', 'Carub.0001s0760' => 'cru', 'Carub.0001s1146' => 'cru', 'Carub.0003s0721' => 'cru', 'Carub.0004s0858' => 'cru', 'Carub.0005s1040' => 'cru', 'Carub.0006s2035' => 'cru', 'Carub.0015s0005' => 'cru', 'Ca_01607_v3' => 'car', 'Ca_01677_v3' => 'car', 'Ca_06087_v3' => 'car', 'Ca_19238_v3' => 'car', 'Ca_19373_v3' => 'car', 'Ca_21079_v3' => 'car', 'CBR_g54016' => 'cbr', 'CBR_g54018' => 'cbr', 'CBR_g54020' => 'cbr', 'Cc01_g09780' => 'ccan', 'Cc01_g11680' => 'ccan', 'Cc02_g15610' => 'ccan', 'Cc05_g04350' => 'ccan', 'Cc09_g01580' => 'ccan', 'CDE01G0795' => 'cde', 'CDE02G2024' => 'cde', 'CDE02G2260' => 'cde', 'CDE02G4561' => 'cde', 'CDE05G2733' => 'cde', 'CDE05G3422' => 'cde', 'CDE06G2003' => 'cde', 'CDE08G0576' => 'cde', 'CDE09G0048' => 'cde', 'CDE11G0805' => 'cde', 'Cfa003644' => 'cfa', 'Cfa006290' => 'cfa', 'Cfa010080' => 'cfa', 'Cfa011376' => 'cfa', 'Cfa011576' => 'cfa', 'Cfa011577' => 'cfa', 'Cfa014389' => 'cfa', 'Ciclev10006044m.g' => 'ccl', 'Ciclev10006954m.g' => 'ccl', 'Ciclev10015131m.g' => 'ccl', 'Ciclev10015580m.g' => 'ccl', 'Ciclev10028359m.g' => 'ccl', 'Ciclev10028573m.g' => 'ccl', 'CiPaw.03G159300' => 'cil', 'CiPaw.04G115100' => 'cil', 'CiPaw.09G092800' => 'cil', 'CiPaw.10G071800' => 'cil', 'CiPaw.13G105800' => 'cil', 'CiPaw.13G141000' => 'cil', 'CiPaw.14G103400' => 'cil', 'ClCG01G012700' => 'cla', 'ClCG01G012720' => 'cla', 'ClCG01G021920' => 'cla', 'ClCG02G008870' => 'cla', 'ClCG02G020840' => 'cla', 'ClCG02G021930' => 'cla', 'COL.COLO4_19302' => 'col', 'COL.COLO4_25262' => 'col', 'COL.COLO4_31788' => 'col', 'Cpa.g.c34684' => 'cpa', 'Cpa.g.c36520.1' => 'cpa', 'Cpa.g.c45626' => 'cpa', 'Cpa.g.sc121.17' => 'cpa', 'Cpa.g.sc13.22' => 'cpa', 'Cpa.g.sc87.88' => 'cpa', 'Cre06.g261800' => 'cre', 'CsaV3_1G014500' => 'csa', 'CsaV3_1G014510' => 'csa', 'CsaV3_2G034880' => 'csa', 'CsaV3_6G014760' => 'csa', 'CsaV3_6G021500' => 'csa', 'CsaV3_6G048980' => 'csa', 'CSS0002511' => 'camsi', 'CSS0007556' => 'camsi', 'CSS0008532' => 'camsi', 'CSS0009709' => 'camsi', 'CSS0010486' => 'camsi', 'CSS0016768' => 'camsi', 'CSS0023512' => 'camsi', 'CSS0025341' => 'camsi', 'CSS0027999' => 'camsi', 'CSS0028944' => 'camsi', 'CSS0032292' => 'camsi', 'CSS0032464' => 'camsi', 'CSS0037153' => 'camsi', 'CSS0039256' => 'camsi', 'CSS0048392' => 'camsi', 'CSS0050458' => 'camsi', 'DCAR_004224' => 'dca', 'DCAR_006147' => 'dca', 'DCAR_006465' => 'dca', 'DCAR_008159' => 'dca', 'DCAR_012164' => 'dca', 'DCAR_019764' => 'dca', 'Dinv05418' => 'din', 'Dinv10839' => 'din', 'Dinv12521' => 'din', 'Dinv13900' => 'din', 'Dinv29426' => 'din', 'Duzib150G0263' => 'dzi', 'Duzib168G1178' => 'dzi', 'Duzib168G1924' => 'dzi', 'Duzib170G0299' => 'dzi', 'Duzib170G0813' => 'dzi', 'Duzib235G1128' => 'dzi', 'Duzib248G1060' => 'dzi', 'ECA232G1910' => 'eca', 'ECA233G4621' => 'eca', 'ECA238G1216' => 'eca', 'ECA238G1784' => 'eca', 'ECA248G1242' => 'eca', 'EL10Ac8g20071' => 'bvu', 'EL10Ac9g21086' => 'bvu', 'EL10Ac9g22407' => 'bvu', 'EL10Ac9g22412' => 'bvu', 'Eucgr.A01119' => 'egr', 'Eucgr.E04043' => 'egr', 'Eucgr.J00428' => 'egr', 'Eucgr.J00958' => 'egr', 'FAN11G3091' => 'fan', 'FAN11G3651' => 'fan', 'FAN16G2566' => 'fan', 'FAN21G3155' => 'fan', 'FAN21G3400' => 'fan', 'FAN21G3543' => 'fan', 'FAN25G0234' => 'fan', 'FAN25G1422' => 'fan', 'FAN25G3392' => 'fan', 'FvH4_3g01940' => 'fve', 'FvH4_3g29870' => 'fve', 'FvH4_3g33680' => 'fve', 'Glyma.09G004200' => 'gma', 'Glyma.11G151288' => 'gma', 'Glyma.11G189100' => 'gma', 'Glyma.12G072500' => 'gma', 'Glyma.12G085500' => 'gma', 'Glyma.12G181800' => 'gma', 'Glyma.12G193000' => 'gma', 'Glyma.13G309300' => 'gma', 'Glyma.13G319000' => 'gma', 'Glyma.17G012600' => 'gma', 'Gohir.A06G148600' => 'ghi', 'Gohir.A07G115800' => 'ghi', 'Gohir.A08G003600' => 'ghi', 'Gohir.A09G093300' => 'ghi', 'Gohir.A09G105400' => 'ghi', 'Gohir.A09G105500' => 'ghi', 'Gohir.D06G154600' => 'ghi', 'Gohir.D07G120200' => 'ghi', 'Gohir.D08G013900' => 'ghi', 'Gohir.D09G093100' => 'ghi', 'Gohir.D09G102200' => 'ghi', 'Gohir.D09G102300' => 'ghi', 'Gorai.001G129400' => 'gra', 'Gorai.004G008200' => 'gra', 'Gorai.006G109800' => 'gra', 'Gorai.006G119500' => 'gra', 'Gorai.006G121300' => 'gra', 'Gorai.010G180700' => 'gra', 'GSVIVG01012716001' => 'vvi', 'GSVIVG01025118001' => 'vvi', 'GSVIVG01030439001' => 'vvi', 'GSVIVG01031397001' => 'vvi', 'HanXRQChr01g0004201' => 'han', 'HanXRQChr02g0054941' => 'han', 'HanXRQChr05g0141811' => 'han', 'HanXRQChr07g0197751' => 'han', 'HanXRQChr11g0346691' => 'han', 'HanXRQChr13g0396971' => 'han', 'HanXRQChr14g0432951' => 'han', 'HanXRQChr14g0452001' => 'han', 'HanXRQChr15g0496681' => 'han', 'HanXRQChr17g0557491' => 'han', 'HanXRQChr17g0557501' => 'han', 'Haze_06809' => 'cav', 'Haze_12852' => 'cav', 'Haze_15850' => 'cav', 'Haze_23446' => 'cav', 'Haze_23942' => 'cav', 'Haze_23943' => 'cav', 'Hma1.2p1_0091F.1_g046450' => 'hma', 'Hma1.2p1_0128F.1_g059910' => 'hma', 'Hma1.2p1_0249F.1_g102260' => 'hma', 'Hma1.2p1_0453F.1_g156190' => 'hma', 'Hma1.2p1_0695F.1_g204380' => 'hma', 'Hma1.2p1_0749F.1_g212650' => 'hma', 'Hma1.2p1_2156F.1_g315420' => 'hma', 'Hma1.2p1_2686F.1_g326940' => 'hma', 'HPP92_006428' => 'vpl', 'HPP92_012069' => 'vpl', 'HPP92_014129' => 'vpl', 'HPP92_014133' => 'vpl', 'HPP92_017315' => 'vpl', 'HPP92_026445' => 'vpl', 'HPP92_026446' => 'vpl', 'Hund00774' => 'sun', 'Hund07682' => 'sun', 'Hund21413' => 'sun', 'Hund23462' => 'sun', 'Hund23463' => 'sun', 'Lalb_Chr03g0027911' => 'lal', 'Lalb_Chr13g0304271' => 'lal', 'Lalb_Chr19g0137471' => 'lal', 'Lalb_Chr22g0350651' => 'lal', 'Lalb_Chr24g0395151' => 'lal', 'Lj1A1231T40' => 'lonja', 'Lj1A221T48' => 'lonja', 'Lj1C924T12' => 'lonja', 'Lj2C993G6' => 'lonja', 'Lj3g0005790' => 'lja', 'Lj3g0015432' => 'lja', 'Lj3g0017722' => 'lja', 'Lj3g0018497' => 'lja', 'Lj4g0025071' => 'lja', 'Lsat_1_v5_gn_1_129680' => 'lsa', 'Lsat_1_v5_gn_2_25321' => 'lsa', 'Lsat_1_v5_gn_2_95461' => 'lsa', 'Lsat_1_v5_gn_4_159620' => 'lsa', 'Lsat_1_v5_gn_6_41301' => 'lsa', 'Lsat_1_v5_gn_6_74660' => 'lsa', 'Lsat_1_v5_gn_7_11520' => 'lsa', 'Lsat_1_v5_gn_9_67680' => 'lsa', 'Manes.04G008300' => 'mes', 'Manes.04G008400' => 'mes', 'Manes.04G026500' => 'mes', 'Manes.10G135300' => 'mes', 'Manes.11G157300' => 'mes', 'Manes.12G074000' => 'mes', 'Manes.16G006200' => 'mes', 'Manes.17G026400' => 'mes', 'Mapoly0024s0086' => 'mpo', 'Mapoly0024s0087' => 'mpo', 'Mapoly0071s0057' => 'mpo', 'Mapoly0204s0012' => 'mpo', 'MBI04_g37681_MAGBIO' => 'mbi', 'MBI05_g17779_MAGBIO' => 'mbi', 'MBI12_g31184_MAGBIO' => 'mbi', 'MBI17_g11083_MAGBIO' => 'mbi', 'MBI18_g03883_MAGBIO' => 'mbi', 'MBI18_g28940_MAGBIO' => 'mbi', 'MCO01G690' => 'mco', 'MD03G1109900' => 'mdo', 'MD03G1134800' => 'mdo', 'MD05G1348000' => 'mdo', 'MD10G1322400' => 'mdo', 'MD11G1123300' => 'mdo', 'MD11G1157600' => 'mdo', 'Medtr2g084875' => 'mtr', 'Medtr2g088130' => 'mtr', 'Medtr4g055310' => 'mtr', 'Medtr4g061070' => 'mtr', 'Medtr4g132250' => 'mtr', 'MELO3C004795.2' => 'cme', 'MELO3C004797.2' => 'cme', 'MELO3C007396.2' => 'cme', 'MELO3C019277.2' => 'cme', 'MELO3C021449.2' => 'cme', 'MELO3C025736.2' => 'cme', 'Migut.D02175' => 'egut', 'Migut.H01573' => 'egut', 'Migut.M01327' => 'egut', 'Migut.N02513' => 'egut', 'MSTRG.14638' => 'ama', 'MSTRG.18632' => 'ama', 'MSTRG.7203' => 'ama', 'Nitab4.5_0000533g0140' => 'nta', 'Nitab4.5_0000888g0150' => 'nta', 'Nitab4.5_0001453g0040' => 'nta', 'Nitab4.5_0002827g0090' => 'nta', 'Nitab4.5_0003082g0040' => 'nta', 'Nitab4.5_0007799g0040' => 'nta', 'Nitab4.5_0008983g0010' => 'nta', 'Nitab4.5_0009017g0020' => 'nta', 'Nn1g02132' => 'nnu', 'Nn1g03492' => 'nnu', 'Nn1g03493' => 'nnu', 'Nn1g03494' => 'nnu', 'Nn1g07164' => 'nnu', 'Nn1g07291' => 'nnu', 'Nn2g10655' => 'nnu', 'Nn2g11652' => 'nnu', 'Nn2g14008' => 'nnu', 'Nn3g17476' => 'nnu', 'Nn3g17477' => 'nnu', 'Nn4g22370' => 'nnu', 'Nn4g25255' => 'nnu', 'Nn5g27755' => 'nnu', 'Nn6g34260' => 'nnu', 'Nn6g35041' => 'nnu', 'Oeu005924.1' => 'oeu', 'Oeu008383.1' => 'oeu', 'Oeu014928.1' => 'oeu', 'Oeu019889.1' => 'oeu', 'Oeu022271.1' => 'oeu', 'Oeu025271.1' => 'oeu', 'Oeu036302.1' => 'oeu', 'Oeu044100.1' => 'oeu', 'Os01g0528300' => 'osa', 'Os03g0286200' => 'osa', 'Os04g0406600' => 'osa', 'Os07g0512000' => 'osa', 'Os07g0694600' => 'osa', 'Os08g0411000' => 'osa', 'Os09g0565700' => 'osa', 'Os09g0566050' => 'osa', 'Os10g0523700' => 'osa', 'Peaxi162Scf00002g00514' => 'pax', 'Peaxi162Scf00047g01817' => 'pax', 'Peaxi162Scf00114g00001' => 'pax', 'Peaxi162Scf00147g00613' => 'pax', 'Peaxi162Scf00389g00425' => 'pax', 'PGR042G1139' => 'pgr', 'PGR042G3273' => 'pgr', 'PGR102G2180' => 'pgr', 'PGR119G0234' => 'pgr', 'PGR119G0668' => 'pgr', 'PGSC0003DMG400007122' => 'stu', 'PGSC0003DMG400016478' => 'stu', 'PGSC0003DMG400025374' => 'stu', 'PGSC0003DMG400026536' => 'stu', 'Phvul.003G079600' => 'pvu', 'Phvul.005G115600' => 'pvu', 'Phvul.005G127100' => 'pvu', 'Phvul.006G149500' => 'pvu', 'Phvul.006G149600' => 'pvu', 'Phvul.011G071800' => 'pvu', 'Phvul.011G090400' => 'pvu', 'Potri.004G013400' => 'ptr', 'Potri.004G188100' => 'ptr', 'Potri.008G195500' => 'ptr', 'Potri.009G148800' => 'ptr', 'Potri.011G004700' => 'ptr', 'Pp3c17_22810' => 'ppa', 'Pp3c18_4480' => 'ppa', 'Pp3c19_13030' => 'ppa', 'Pp3c1_33620' => 'ppa', 'Pp3c2_9380' => 'ppa', 'PRCOL_00001023' => 'pco', 'Prupe.3G216300' => 'ppe', 'Prupe.4G019500' => 'ppe', 'Prupe.6G092500' => 'ppe', 'Prupe.6G119200' => 'ppe', 'Psat0s1945g0080' => 'psa', 'Psat0s4167g0040' => 'psa', 'Psat1g185800' => 'psa', 'Psat4g006440' => 'psa', 'Psat4g006480' => 'psa', 'Psat4g168120' => 'psa', 'Psat5g255680' => 'psa', 'Psat5g261760' => 'psa', 'Psat7g222120' => 'psa', 'PSO063G7252' => 'pso', 'PSO170G4778' => 'pso', 'PSO210G2249' => 'pso', 'PSO339G2411' => 'pso', 'PSO339G2457' => 'pso', 'PSO339G2854' => 'pso', 'PSO339G4288' => 'pso', 'PSO339G4615' => 'pso', 'PSO384G2796' => 'pso', 'PSO384G2940' => 'pso', 'PSO384G4227' => 'pso', 'PSO478G1425' => 'pso', 'PSO541G3863' => 'pso', 'PSO675G0507' => 'pso', 'PSO782G0338' => 'pso', 'PSO832G0644' => 'pso', 'QL01p013664' => 'qlo', 'QL01p036598' => 'qlo', 'QL05p072984' => 'qlo', 'QL08p005768' => 'qlo', 'QL08p032743' => 'qlo', 'QL93p0073_0439' => 'qlo', 'QL93p0073_0444' => 'qlo', 'RcHm_v2.0_Chr5g0002851' => 'rch', 'RcHm_v2.0_Chr5g0055201' => 'rch', 'RcHm_v2.0_Chr5g0061191' => 'rch', 'RcHm_v2.0_Chr7g0203231' => 'rch', 'Rhsim01G0208100' => 'rsi', 'Rhsim01G0208200' => 'rsi', 'Rhsim02G0106500' => 'rsi', 'Rhsim03G0107900' => 'rsi', 'Rhsim06G0163400' => 'rsi', 'Rhsim13G0105200' => 'rsi', 'Sabra04G0006300' => 'sbr', 'Sabra04G0127000' => 'sbr', 'Sabra08G0148700' => 'sbr', 'Sabra09G0117400' => 'sbr', 'SalBow1G3326' => 'sbo', 'SalBow3G3228' => 'sbo', 'SalBow6G1634' => 'sbo', 'SalBow6G3603' => 'sbo', 'SalBow6G5266' => 'sbo', 'SalBow7G2265' => 'sbo', 'SalBow8G0850' => 'sbo', 'SalBow8G2592' => 'sbo', 'Sc05g0009240' => 'sci', 'Sc12g0002300' => 'sci', 'Sc21g0000100' => 'sci', 'Sc21g0004720' => 'sci', 'Sed0002949' => 'sed', 'Sed0004114' => 'sed', 'Sed0004306' => 'sed', 'Sed0006172' => 'sed', 'Sed0008413' => 'sed', 'Sed0013809' => 'sed', 'Sed0019556' => 'sed', 'SEGI_03570' => 'sgi', 'SEGI_07859' => 'sgi', 'SEGI_15042' => 'sgi', 'SEGI_16263' => 'sgi', 'SEGI_16552' => 'sgi', 'SEGI_24331' => 'sgi', 'SEGI_27316' => 'sgi', 'SEGI_29521' => 'sgi', 'SEGI_41342' => 'sgi', 'SGA_v2.0_scaffold27G11617' => 'sas', 'SGA_v2.0_scaffold316G48428' => 'sas', 'SGA_v2.0_scaffold49G18261' => 'sas', 'SGA_v2.0_scaffold7G03831' => 'sas', 'SGA_v2.0_scaffold93G28359' => 'sas', 'SHI02210' => 'shi', 'SHI06028' => 'shi', 'SHI06321' => 'shi', 'SMO111G0012' => 'smo', 'SMO228G0080' => 'smo', 'SMO356G0756' => 'smo', 'Solyc02g080620.3' => 'sly', 'Solyc06g074530.1' => 'sly', 'Solyc11g066890.1' => 'sly', 'Solyc11g072520.3' => 'sly', 'Sopen02g025330' => 'spe', 'Sopen06g031000' => 'spe', 'Sopen09g008240' => 'spe', 'Sopen09g025210' => 'spe', 'Sopen11g026600' => 'spe', 'Sopen11g030170' => 'spe', 'Sp1g10420' => 'spa', 'Sp3g06570' => 'spa', 'Sp4g10660' => 'spa', 'Sp5g16460' => 'spa', 'Sp6g22710' => 'spa', 'TAR365G0112' => 'tar', 'TAR369G0717' => 'tar', 'TAR374G0976' => 'tar', 'TAR623G1128' => 'tar', 'TAR626G1937' => 'tar', 'TAR627G0123' => 'tar', 'TAR628G0305' => 'tar', 'TAR636G1176' => 'tar', 'TAR636G2442' => 'tar', 'THA.LOC104800556' => 'tha', 'THA.LOC104809501' => 'tha', 'THA.LOC104815126' => 'tha', 'THA.LOC104815732' => 'tha', 'THA.LOC104823528' => 'tha', 'Thecc.02G365600' => 'tca', 'Thecc.06G222300' => 'tca', 'Thecc.09G261800' => 'tca', 'Thecc.09G291400' => 'tca', 'Thhalv10003028m.g' => 'esa', 'Thhalv10007886m.g' => 'esa', 'Thhalv10016085m.g' => 'esa', 'Thhalv10016681m.g' => 'esa', 'Thhalv10020951m.g' => 'esa', 'TPR.G15598' => 'tpr', 'TPR.G29305' => 'tpr', 'TPR.G32395' => 'tpr', 'TPR.G36998' => 'tpr', 'TPR.G4227' => 'tpr', 'TWI18G1433' => 'twi', 'TWI31G0755' => 'twi', 'TWI38G0912' => 'twi', 'TWI75G1097' => 'twi', 'TWI75G1619' => 'twi', 'TWI79G1336' => 'twi', 'unitig_0.g943' => 'ugi', 'unitig_0.g944' => 'ugi', 'unitig_22.g6646' => 'ugi', 'unitig_37.g12681' => 'ugi', 'unitig_8.g3290' => 'ugi', 'vmacro03278' => 'vma', 'vmacro12197' => 'vma', 'vmacro14478' => 'vma', 'vmacro15787' => 'vma', 'vmacro15789' => 'vma', 'vmacro15790' => 'vma', 'vmacro15806' => 'vma', 'vmacro22907' => 'vma', 'vmacro22908' => 'vma', 'vmacro22909' => 'vma', 'vmacro23108' => 'vma', 'VMungo0540G0540' => 'vmu', 'VMungo0540G2468' => 'vmu', 'VMungo1080G0390' => 'vmu', 'VMungo1080G1165' => 'vmu', 'VMungo1127G0170' => 'vmu', 'VMungo1127G2099' => 'vmu', 'VMungo1215G3013' => 'vmu', 'Zm00001eb013110' => 'zma', 'Zm00001eb084260' => 'zma', 'Zm00001eb096110' => 'zma', 'Zm00001eb217510' => 'zma', 'Zm00001eb322550' => 'zma', 'Zm00001eb390770' => 'zma', 'Zm00001eb397170' => 'zma', 'Zm00001eb404610' => 'zma', 'Zm00001eb421790' => 'zma' ), 'gf_id' => 'HOM05D000911', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000911' ), 'data_identifier' => 'HOM05D000911', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000911', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27780' => 'bna', 'A03p35380' => 'bna', 'A04p21160' => 'bna', 'A05p40570' => 'bna', 'A06p26900' => 'bna', 'A08p33230' => 'bna', 'A09p65960' => 'bna', 'A10p18290' => 'bna', 'Aa31LG1G12990' => 'aar', 'Aa31LG1G2980' => 'aar', 'Aa31LG4G14320' => 'aar', 'Aa31LG7G11800' => 'aar', 'Aa31sc36G50' => 'aar', 'Aa31sc36G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3721' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5459' => 'aag', 'Actinidia03028' => 'ach', 'Actinidia03753' => 'ach', 'Actinidia04187' => 'ach', 'Actinidia05509' => 'ach', 'Actinidia24180' => 'ach', 'Actinidia26906' => 'ach', 'Actinidia37097' => 'ach', 'Actinidia38249' => 'ach', 'Ah.01g003470' => 'amhyb', 'Ah.01g004580' => 'amhyb', 'Ah.01g014850' => 'amhyb', 'Ah.01g016830' => 'amhyb', 'Ah.14g088000' => 'amhyb', 'AL1G22980' => 'aly', 'AL3G18990' => 'aly', 'AL4G22440' => 'aly', 'AL4G33180' => 'aly', 'AL5G22920' => 'aly', 'AL6G33660' => 'aly', 'AL8G20720' => 'aly', 'Aqoxy1G00935' => 'aox', 'Aqoxy1G02094' => 'aox', 'Aqoxy2G01239' => 'aox', 'Aqoxy4G01870' => 'aox', 'Aqoxy7G00450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.36ZVTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71EM27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5D6C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH3WRE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3NCM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RIM768' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YB5YRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z36GDV' => 'arhy', 'AT1G08250' => 'ath', 'AT1G11790' => 'ath', 'AT2G27820' => 'ath', 'AT3G07630' => 'ath', 'AT3G44720' => 'ath', 'AT5G22630' => 'ath', 'ATR0693G304' => 'atr', 'ATR0794G109' => 'atr', 'ATR0820G120' => 'atr', 'ATR1159G064' => 'atr', 'Atru.chr10.2239' => 'acertr', 'Atru.chr3.3371' => 'acertr', 'Atru.chr6.3202' => 'acertr', 'AUR62006499' => 'cqu', 'AUR62012718' => 'cqu', 'AUR62021938' => 'cqu', 'AUR62023932' => 'cqu', 'AUR62025034' => 'cqu', 'AUR62025035' => 'cqu', 'AUR62038307' => 'cqu', 'AUR62043466' => 'cqu', 'BcaB02g10748' => 'bca', 'BcaB03g13231' => 'bca', 'BcaB03g14689' => 'bca', 'BcaB05g22716' => 'bca', 'BcaB06g28172' => 'bca', 'BcaB08g36413' => 'bca', 'BcaC01g02186' => 'bca', 'BcaC01g04272' => 'bca', 'BcaC02g08080' => 'bca', 'BcaC02g08227' => 'bca', 'BcaC03g13901' => 'bca', 'BcaC04g19593' => 'bca', 'BcaC04g20874' => 'bca', 'BcaC05g29557' => 'bca', 'BcaC06g35505' => 'bca', 'BcaC07g41954' => 'bca', 'BcaC07g41955' => 'bca', 'BcaC07g41956' => 'bca', 'BcaC07g42519' => 'bca', 'BcaC07g42520' => 'bca', 'BcaC07g42523' => 'bca', 'BcaC07g42524' => 'bca', 'BcaC07g42525' => 'bca', 'BcaC08g47480' => 'bca', 'BcaC08g47481' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00530' => 'bna', 'BolC2t07178H' => 'bol', 'BolC3t16567H' => 'bol', 'BolC4t27234H' => 'bol', 'BolC5t29728H' => 'bol', 'BolC5t34622H' => 'bol', 'BolC6t40321H' => 'bol', 'BolC7t42028H' => 'bol', 'BolC8t49125H' => 'bol', 'BolC8t52538H' => 'bol', 'BolC8t52539H' => 'bol', 'BolC9t56681H' => 'bol', 'BolC9t58266H' => 'bol', 'BolSC21t60294H' => 'bol', 'BraA02t05670Z' => 'bra', 'BraA03t12716Z' => 'bra', 'BraA04t17685Z' => 'bra', 'BraA05t22788Z' => 'bra', 'BraA06t24032Z' => 'bra', 'BraA06t25625Z' => 'bra', 'BraA07t27930Z' => 'bra', 'BraA08t35242Z' => 'bra', 'BraA09t38609Z' => 'bra', 'BraA10t43905Z' => 'bra', 'C02p11060' => 'bna', 'C03p42990' => 'bna', 'C03p67310' => 'bna', 'C04p56990' => 'bna', 'C04p58660' => 'bna', 'C05p09890' => 'bna', 'C05p59680' => 'bna', 'C06p19830' => 'bna', 'C06p53040' => 'bna', 'C07p15230' => 'bna', 'C08p50070' => 'bna', 'C08p50090' => 'bna', 'C09p38330' => 'bna', 'C09p53940' => 'bna', 'CAN.G1014.1' => 'can', 'CAN.G644.30' => 'can', 'CAN.G84.47' => 'can', 'CAN.G919.8' => 'can', 'CANSAT54G0113' => 'cansat', 'CANSAT54G1286' => 'cansat', 'CANSAT64G1020' => 'cansat', 'CARHR008080' => 'chi', 'CARHR008090' => 'chi', 'CARHR012130' => 'chi', 'CARHR038390' => 'chi', 'CARHR082330' => 'chi', 'CARHR120520' => 'chi', 'CARHR151470' => 'chi', 'CARHR190950' => 'chi', 'Carub.0001s0760' => 'cru', 'Carub.0001s1146' => 'cru', 'Carub.0003s0721' => 'cru', 'Carub.0004s0858' => 'cru', 'Carub.0005s1040' => 'cru', 'Carub.0006s2035' => 'cru', 'Carub.0015s0005' => 'cru', 'Ca_01607_v3' => 'car', 'Ca_01677_v3' => 'car', 'Ca_06087_v3' => 'car', 'Ca_19238_v3' => 'car', 'Ca_19373_v3' => 'car', 'Ca_21079_v3' => 'car', 'CBR_g54016' => 'cbr', 'CBR_g54018' => 'cbr', 'CBR_g54020' => 'cbr', 'Cc01_g09780' => 'ccan', 'Cc01_g11680' => 'ccan', 'Cc02_g15610' => 'ccan', 'Cc05_g04350' => 'ccan', 'Cc09_g01580' => 'ccan', 'CDE01G0795' => 'cde', 'CDE02G2024' => 'cde', 'CDE02G2260' => 'cde', 'CDE02G4561' => 'cde', 'CDE05G2733' => 'cde', 'CDE05G3422' => 'cde', 'CDE06G2003' => 'cde', 'CDE08G0576' => 'cde', 'CDE09G0048' => 'cde', 'CDE11G0805' => 'cde', 'Cfa003644' => 'cfa', 'Cfa006290' => 'cfa', 'Cfa010080' => 'cfa', 'Cfa011376' => 'cfa', 'Cfa011576' => 'cfa', 'Cfa011577' => 'cfa', 'Cfa014389' => 'cfa', 'Ciclev10006044m.g' => 'ccl', 'Ciclev10006954m.g' => 'ccl', 'Ciclev10015131m.g' => 'ccl', 'Ciclev10015580m.g' => 'ccl', 'Ciclev10028359m.g' => 'ccl', 'Ciclev10028573m.g' => 'ccl', 'CiPaw.03G159300' => 'cil', 'CiPaw.04G115100' => 'cil', 'CiPaw.09G092800' => 'cil', 'CiPaw.10G071800' => 'cil', 'CiPaw.13G105800' => 'cil', 'CiPaw.13G141000' => 'cil', 'CiPaw.14G103400' => 'cil', 'ClCG01G012700' => 'cla', 'ClCG01G012720' => 'cla', 'ClCG01G021920' => 'cla', 'ClCG02G008870' => 'cla', 'ClCG02G020840' => 'cla', 'ClCG02G021930' => 'cla', 'COL.COLO4_19302' => 'col', 'COL.COLO4_25262' => 'col', 'COL.COLO4_31788' => 'col', 'Cpa.g.c34684' => 'cpa', 'Cpa.g.c36520.1' => 'cpa', 'Cpa.g.c45626' => 'cpa', 'Cpa.g.sc121.17' => 'cpa', 'Cpa.g.sc13.22' => 'cpa', 'Cpa.g.sc87.88' => 'cpa', 'Cre06.g261800' => 'cre', 'CsaV3_1G014500' => 'csa', 'CsaV3_1G014510' => 'csa', 'CsaV3_2G034880' => 'csa', 'CsaV3_6G014760' => 'csa', 'CsaV3_6G021500' => 'csa', 'CsaV3_6G048980' => 'csa', 'CSS0002511' => 'camsi', 'CSS0007556' => 'camsi', 'CSS0008532' => 'camsi', 'CSS0009709' => 'camsi', 'CSS0010486' => 'camsi', 'CSS0016768' => 'camsi', 'CSS0023512' => 'camsi', 'CSS0025341' => 'camsi', 'CSS0027999' => 'camsi', 'CSS0028944' => 'camsi', 'CSS0032292' => 'camsi', 'CSS0032464' => 'camsi', 'CSS0037153' => 'camsi', 'CSS0039256' => 'camsi', 'CSS0048392' => 'camsi', 'CSS0050458' => 'camsi', 'DCAR_004224' => 'dca', 'DCAR_006147' => 'dca', 'DCAR_006465' => 'dca', 'DCAR_008159' => 'dca', 'DCAR_012164' => 'dca', 'DCAR_019764' => 'dca', 'Dinv05418' => 'din', 'Dinv10839' => 'din', 'Dinv12521' => 'din', 'Dinv13900' => 'din', 'Dinv29426' => 'din', 'Duzib150G0263' => 'dzi', 'Duzib168G1178' => 'dzi', 'Duzib168G1924' => 'dzi', 'Duzib170G0299' => 'dzi', 'Duzib170G0813' => 'dzi', 'Duzib235G1128' => 'dzi', 'Duzib248G1060' => 'dzi', 'ECA232G1910' => 'eca', 'ECA233G4621' => 'eca', 'ECA238G1216' => 'eca', 'ECA238G1784' => 'eca', 'ECA248G1242' => 'eca', 'EL10Ac8g20071' => 'bvu', 'EL10Ac9g21086' => 'bvu', 'EL10Ac9g22407' => 'bvu', 'EL10Ac9g22412' => 'bvu', 'Eucgr.A01119' => 'egr', 'Eucgr.E04043' => 'egr', 'Eucgr.J00428' => 'egr', 'Eucgr.J00958' => 'egr', 'FAN11G3091' => 'fan', 'FAN11G3651' => 'fan', 'FAN16G2566' => 'fan', 'FAN21G3155' => 'fan', 'FAN21G3400' => 'fan', 'FAN21G3543' => 'fan', 'FAN25G0234' => 'fan', 'FAN25G1422' => 'fan', 'FAN25G3392' => 'fan', 'FvH4_3g01940' => 'fve', 'FvH4_3g29870' => 'fve', 'FvH4_3g33680' => 'fve', 'Glyma.09G004200' => 'gma', 'Glyma.11G151288' => 'gma', 'Glyma.11G189100' => 'gma', 'Glyma.12G072500' => 'gma', 'Glyma.12G085500' => 'gma', 'Glyma.12G181800' => 'gma', 'Glyma.12G193000' => 'gma', 'Glyma.13G309300' => 'gma', 'Glyma.13G319000' => 'gma', 'Glyma.17G012600' => 'gma', 'Gohir.A06G148600' => 'ghi', 'Gohir.A07G115800' => 'ghi', 'Gohir.A08G003600' => 'ghi', 'Gohir.A09G093300' => 'ghi', 'Gohir.A09G105400' => 'ghi', 'Gohir.A09G105500' => 'ghi', 'Gohir.D06G154600' => 'ghi', 'Gohir.D07G120200' => 'ghi', 'Gohir.D08G013900' => 'ghi', 'Gohir.D09G093100' => 'ghi', 'Gohir.D09G102200' => 'ghi', 'Gohir.D09G102300' => 'ghi', 'Gorai.001G129400' => 'gra', 'Gorai.004G008200' => 'gra', 'Gorai.006G109800' => 'gra', 'Gorai.006G119500' => 'gra', 'Gorai.006G121300' => 'gra', 'Gorai.010G180700' => 'gra', 'GSVIVG01012716001' => 'vvi', 'GSVIVG01025118001' => 'vvi', 'GSVIVG01030439001' => 'vvi', 'GSVIVG01031397001' => 'vvi', 'HanXRQChr01g0004201' => 'han', 'HanXRQChr02g0054941' => 'han', 'HanXRQChr05g0141811' => 'han', 'HanXRQChr07g0197751' => 'han', 'HanXRQChr11g0346691' => 'han', 'HanXRQChr13g0396971' => 'han', 'HanXRQChr14g0432951' => 'han', 'HanXRQChr14g0452001' => 'han', 'HanXRQChr15g0496681' => 'han', 'HanXRQChr17g0557491' => 'han', 'HanXRQChr17g0557501' => 'han', 'Haze_06809' => 'cav', 'Haze_12852' => 'cav', 'Haze_15850' => 'cav', 'Haze_23446' => 'cav', 'Haze_23942' => 'cav', 'Haze_23943' => 'cav', 'Hma1.2p1_0091F.1_g046450' => 'hma', 'Hma1.2p1_0128F.1_g059910' => 'hma', 'Hma1.2p1_0249F.1_g102260' => 'hma', 'Hma1.2p1_0453F.1_g156190' => 'hma', 'Hma1.2p1_0695F.1_g204380' => 'hma', 'Hma1.2p1_0749F.1_g212650' => 'hma', 'Hma1.2p1_2156F.1_g315420' => 'hma', 'Hma1.2p1_2686F.1_g326940' => 'hma', 'HPP92_006428' => 'vpl', 'HPP92_012069' => 'vpl', 'HPP92_014129' => 'vpl', 'HPP92_014133' => 'vpl', 'HPP92_017315' => 'vpl', 'HPP92_026445' => 'vpl', 'HPP92_026446' => 'vpl', 'Hund00774' => 'sun', 'Hund07682' => 'sun', 'Hund21413' => 'sun', 'Hund23462' => 'sun', 'Hund23463' => 'sun', 'Lalb_Chr03g0027911' => 'lal', 'Lalb_Chr13g0304271' => 'lal', 'Lalb_Chr19g0137471' => 'lal', 'Lalb_Chr22g0350651' => 'lal', 'Lalb_Chr24g0395151' => 'lal', 'Lj1A1231T40' => 'lonja', 'Lj1A221T48' => 'lonja', 'Lj1C924T12' => 'lonja', 'Lj2C993G6' => 'lonja', 'Lj3g0005790' => 'lja', 'Lj3g0015432' => 'lja', 'Lj3g0017722' => 'lja', 'Lj3g0018497' => 'lja', 'Lj4g0025071' => 'lja', 'Lsat_1_v5_gn_1_129680' => 'lsa', 'Lsat_1_v5_gn_2_25321' => 'lsa', 'Lsat_1_v5_gn_2_95461' => 'lsa', 'Lsat_1_v5_gn_4_159620' => 'lsa', 'Lsat_1_v5_gn_6_41301' => 'lsa', 'Lsat_1_v5_gn_6_74660' => 'lsa', 'Lsat_1_v5_gn_7_11520' => 'lsa', 'Lsat_1_v5_gn_9_67680' => 'lsa', 'Manes.04G008300' => 'mes', 'Manes.04G008400' => 'mes', 'Manes.04G026500' => 'mes', 'Manes.10G135300' => 'mes', 'Manes.11G157300' => 'mes', 'Manes.12G074000' => 'mes', 'Manes.16G006200' => 'mes', 'Manes.17G026400' => 'mes', 'Mapoly0024s0086' => 'mpo', 'Mapoly0024s0087' => 'mpo', 'Mapoly0071s0057' => 'mpo', 'Mapoly0204s0012' => 'mpo', 'MBI04_g37681_MAGBIO' => 'mbi', 'MBI05_g17779_MAGBIO' => 'mbi', 'MBI12_g31184_MAGBIO' => 'mbi', 'MBI17_g11083_MAGBIO' => 'mbi', 'MBI18_g03883_MAGBIO' => 'mbi', 'MBI18_g28940_MAGBIO' => 'mbi', 'MCO01G690' => 'mco', 'MD03G1109900' => 'mdo', 'MD03G1134800' => 'mdo', 'MD05G1348000' => 'mdo', 'MD10G1322400' => 'mdo', 'MD11G1123300' => 'mdo', 'MD11G1157600' => 'mdo', 'Medtr2g084875' => 'mtr', 'Medtr2g088130' => 'mtr', 'Medtr4g055310' => 'mtr', 'Medtr4g061070' => 'mtr', 'Medtr4g132250' => 'mtr', 'MELO3C004795.2' => 'cme', 'MELO3C004797.2' => 'cme', 'MELO3C007396.2' => 'cme', 'MELO3C019277.2' => 'cme', 'MELO3C021449.2' => 'cme', 'MELO3C025736.2' => 'cme', 'Migut.D02175' => 'egut', 'Migut.H01573' => 'egut', 'Migut.M01327' => 'egut', 'Migut.N02513' => 'egut', 'MSTRG.14638' => 'ama', 'MSTRG.18632' => 'ama', 'MSTRG.7203' => 'ama', 'Nitab4.5_0000533g0140' => 'nta', 'Nitab4.5_0000888g0150' => 'nta', 'Nitab4.5_0001453g0040' => 'nta', 'Nitab4.5_0002827g0090' => 'nta', 'Nitab4.5_0003082g0040' => 'nta', 'Nitab4.5_0007799g0040' => 'nta', 'Nitab4.5_0008983g0010' => 'nta', 'Nitab4.5_0009017g0020' => 'nta', 'Nn1g02132' => 'nnu', 'Nn1g03492' => 'nnu', 'Nn1g03493' => 'nnu', 'Nn1g03494' => 'nnu', 'Nn1g07164' => 'nnu', 'Nn1g07291' => 'nnu', 'Nn2g10655' => 'nnu', 'Nn2g11652' => 'nnu', 'Nn2g14008' => 'nnu', 'Nn3g17476' => 'nnu', 'Nn3g17477' => 'nnu', 'Nn4g22370' => 'nnu', 'Nn4g25255' => 'nnu', 'Nn5g27755' => 'nnu', 'Nn6g34260' => 'nnu', 'Nn6g35041' => 'nnu', 'Oeu005924.1' => 'oeu', 'Oeu008383.1' => 'oeu', 'Oeu014928.1' => 'oeu', 'Oeu019889.1' => 'oeu', 'Oeu022271.1' => 'oeu', 'Oeu025271.1' => 'oeu', 'Oeu036302.1' => 'oeu', 'Oeu044100.1' => 'oeu', 'Os01g0528300' => 'osa', 'Os03g0286200' => 'osa', 'Os04g0406600' => 'osa', 'Os07g0512000' => 'osa', 'Os07g0694600' => 'osa', 'Os08g0411000' => 'osa', 'Os09g0565700' => 'osa', 'Os09g0566050' => 'osa', 'Os10g0523700' => 'osa', 'Peaxi162Scf00002g00514' => 'pax', 'Peaxi162Scf00047g01817' => 'pax', 'Peaxi162Scf00114g00001' => 'pax', 'Peaxi162Scf00147g00613' => 'pax', 'Peaxi162Scf00389g00425' => 'pax', 'PGR042G1139' => 'pgr', 'PGR042G3273' => 'pgr', 'PGR102G2180' => 'pgr', 'PGR119G0234' => 'pgr', 'PGR119G0668' => 'pgr', 'PGSC0003DMG400007122' => 'stu', 'PGSC0003DMG400016478' => 'stu', 'PGSC0003DMG400025374' => 'stu', 'PGSC0003DMG400026536' => 'stu', 'Phvul.003G079600' => 'pvu', 'Phvul.005G115600' => 'pvu', 'Phvul.005G127100' => 'pvu', 'Phvul.006G149500' => 'pvu', 'Phvul.006G149600' => 'pvu', 'Phvul.011G071800' => 'pvu', 'Phvul.011G090400' => 'pvu', 'Potri.004G013400' => 'ptr', 'Potri.004G188100' => 'ptr', 'Potri.008G195500' => 'ptr', 'Potri.009G148800' => 'ptr', 'Potri.011G004700' => 'ptr', 'Pp3c17_22810' => 'ppa', 'Pp3c18_4480' => 'ppa', 'Pp3c19_13030' => 'ppa', 'Pp3c1_33620' => 'ppa', 'Pp3c2_9380' => 'ppa', 'PRCOL_00001023' => 'pco', 'Prupe.3G216300' => 'ppe', 'Prupe.4G019500' => 'ppe', 'Prupe.6G092500' => 'ppe', 'Prupe.6G119200' => 'ppe', 'Psat0s1945g0080' => 'psa', 'Psat0s4167g0040' => 'psa', 'Psat1g185800' => 'psa', 'Psat4g006440' => 'psa', 'Psat4g006480' => 'psa', 'Psat4g168120' => 'psa', 'Psat5g255680' => 'psa', 'Psat5g261760' => 'psa', 'Psat7g222120' => 'psa', 'PSO063G7252' => 'pso', 'PSO170G4778' => 'pso', 'PSO210G2249' => 'pso', 'PSO339G2411' => 'pso', 'PSO339G2457' => 'pso', 'PSO339G2854' => 'pso', 'PSO339G4288' => 'pso', 'PSO339G4615' => 'pso', 'PSO384G2796' => 'pso', 'PSO384G2940' => 'pso', 'PSO384G4227' => 'pso', 'PSO478G1425' => 'pso', 'PSO541G3863' => 'pso', 'PSO675G0507' => 'pso', 'PSO782G0338' => 'pso', 'PSO832G0644' => 'pso', 'QL01p013664' => 'qlo', 'QL01p036598' => 'qlo', 'QL05p072984' => 'qlo', 'QL08p005768' => 'qlo', 'QL08p032743' => 'qlo', 'QL93p0073_0439' => 'qlo', 'QL93p0073_0444' => 'qlo', 'RcHm_v2.0_Chr5g0002851' => 'rch', 'RcHm_v2.0_Chr5g0055201' => 'rch', 'RcHm_v2.0_Chr5g0061191' => 'rch', 'RcHm_v2.0_Chr7g0203231' => 'rch', 'Rhsim01G0208100' => 'rsi', 'Rhsim01G0208200' => 'rsi', 'Rhsim02G0106500' => 'rsi', 'Rhsim03G0107900' => 'rsi', 'Rhsim06G0163400' => 'rsi', 'Rhsim13G0105200' => 'rsi', 'Sabra04G0006300' => 'sbr', 'Sabra04G0127000' => 'sbr', 'Sabra08G0148700' => 'sbr', 'Sabra09G0117400' => 'sbr', 'SalBow1G3326' => 'sbo', 'SalBow3G3228' => 'sbo', 'SalBow6G1634' => 'sbo', 'SalBow6G3603' => 'sbo', 'SalBow6G5266' => 'sbo', 'SalBow7G2265' => 'sbo', 'SalBow8G0850' => 'sbo', 'SalBow8G2592' => 'sbo', 'Sc05g0009240' => 'sci', 'Sc12g0002300' => 'sci', 'Sc21g0000100' => 'sci', 'Sc21g0004720' => 'sci', 'Sed0002949' => 'sed', 'Sed0004114' => 'sed', 'Sed0004306' => 'sed', 'Sed0006172' => 'sed', 'Sed0008413' => 'sed', 'Sed0013809' => 'sed', 'Sed0019556' => 'sed', 'SEGI_03570' => 'sgi', 'SEGI_07859' => 'sgi', 'SEGI_15042' => 'sgi', 'SEGI_16263' => 'sgi', 'SEGI_16552' => 'sgi', 'SEGI_24331' => 'sgi', 'SEGI_27316' => 'sgi', 'SEGI_29521' => 'sgi', 'SEGI_41342' => 'sgi', 'SGA_v2.0_scaffold27G11617' => 'sas', 'SGA_v2.0_scaffold316G48428' => 'sas', 'SGA_v2.0_scaffold49G18261' => 'sas', 'SGA_v2.0_scaffold7G03831' => 'sas', 'SGA_v2.0_scaffold93G28359' => 'sas', 'SHI02210' => 'shi', 'SHI06028' => 'shi', 'SHI06321' => 'shi', 'SMO111G0012' => 'smo', 'SMO228G0080' => 'smo', 'SMO356G0756' => 'smo', 'Solyc02g080620.3' => 'sly', 'Solyc06g074530.1' => 'sly', 'Solyc11g066890.1' => 'sly', 'Solyc11g072520.3' => 'sly', 'Sopen02g025330' => 'spe', 'Sopen06g031000' => 'spe', 'Sopen09g008240' => 'spe', 'Sopen09g025210' => 'spe', 'Sopen11g026600' => 'spe', 'Sopen11g030170' => 'spe', 'Sp1g10420' => 'spa', 'Sp3g06570' => 'spa', 'Sp4g10660' => 'spa', 'Sp5g16460' => 'spa', 'Sp6g22710' => 'spa', 'TAR365G0112' => 'tar', 'TAR369G0717' => 'tar', 'TAR374G0976' => 'tar', 'TAR623G1128' => 'tar', 'TAR626G1937' => 'tar', 'TAR627G0123' => 'tar', 'TAR628G0305' => 'tar', 'TAR636G1176' => 'tar', 'TAR636G2442' => 'tar', 'THA.LOC104800556' => 'tha', 'THA.LOC104809501' => 'tha', 'THA.LOC104815126' => 'tha', 'THA.LOC104815732' => 'tha', 'THA.LOC104823528' => 'tha', 'Thecc.02G365600' => 'tca', 'Thecc.06G222300' => 'tca', 'Thecc.09G261800' => 'tca', 'Thecc.09G291400' => 'tca', 'Thhalv10003028m.g' => 'esa', 'Thhalv10007886m.g' => 'esa', 'Thhalv10016085m.g' => 'esa', 'Thhalv10016681m.g' => 'esa', 'Thhalv10020951m.g' => 'esa', 'TPR.G15598' => 'tpr', 'TPR.G29305' => 'tpr', 'TPR.G32395' => 'tpr', 'TPR.G36998' => 'tpr', 'TPR.G4227' => 'tpr', 'TWI18G1433' => 'twi', 'TWI31G0755' => 'twi', 'TWI38G0912' => 'twi', 'TWI75G1097' => 'twi', 'TWI75G1619' => 'twi', 'TWI79G1336' => 'twi', 'unitig_0.g943' => 'ugi', 'unitig_0.g944' => 'ugi', 'unitig_22.g6646' => 'ugi', 'unitig_37.g12681' => 'ugi', 'unitig_8.g3290' => 'ugi', 'vmacro03278' => 'vma', 'vmacro12197' => 'vma', 'vmacro14478' => 'vma', 'vmacro15787' => 'vma', 'vmacro15789' => 'vma', 'vmacro15790' => 'vma', 'vmacro15806' => 'vma', 'vmacro22907' => 'vma', 'vmacro22908' => 'vma', 'vmacro22909' => 'vma', 'vmacro23108' => 'vma', 'VMungo0540G0540' => 'vmu', 'VMungo0540G2468' => 'vmu', 'VMungo1080G0390' => 'vmu', 'VMungo1080G1165' => 'vmu', 'VMungo1127G0170' => 'vmu', 'VMungo1127G2099' => 'vmu', 'VMungo1215G3013' => 'vmu', 'Zm00001eb013110' => 'zma', 'Zm00001eb084260' => 'zma', 'Zm00001eb096110' => 'zma', 'Zm00001eb217510' => 'zma', 'Zm00001eb322550' => 'zma', 'Zm00001eb390770' => 'zma', 'Zm00001eb397170' => 'zma', 'Zm00001eb404610' => 'zma', 'Zm00001eb421790' => 'zma' ) $gf_id = 'HOM05D000911' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000911' ) $data_identifier = 'HOM05D000911' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 16, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 5, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 6, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 8, 'nnu' => (int) 16, 'oeu' => (int) 8, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 5, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 16, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421790' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000911', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27780' => 'bna', 'A03p35380' => 'bna', 'A04p21160' => 'bna', 'A05p40570' => 'bna', 'A06p26900' => 'bna', 'A08p33230' => 'bna', 'A09p65960' => 'bna', 'A10p18290' => 'bna', 'Aa31LG1G12990' => 'aar', 'Aa31LG1G2980' => 'aar', 'Aa31LG4G14320' => 'aar', 'Aa31LG7G11800' => 'aar', 'Aa31sc36G50' => 'aar', 'Aa31sc36G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3721' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5459' => 'aag', 'Actinidia03028' => 'ach', 'Actinidia03753' => 'ach', 'Actinidia04187' => 'ach', 'Actinidia05509' => 'ach', 'Actinidia24180' => 'ach', 'Actinidia26906' => 'ach', 'Actinidia37097' => 'ach', 'Actinidia38249' => 'ach', 'Ah.01g003470' => 'amhyb', 'Ah.01g004580' => 'amhyb', 'Ah.01g014850' => 'amhyb', 'Ah.01g016830' => 'amhyb', 'Ah.14g088000' => 'amhyb', 'AL1G22980' => 'aly', 'AL3G18990' => 'aly', 'AL4G22440' => 'aly', 'AL4G33180' => 'aly', 'AL5G22920' => 'aly', 'AL6G33660' => 'aly', 'AL8G20720' => 'aly', 'Aqoxy1G00935' => 'aox', 'Aqoxy1G02094' => 'aox', 'Aqoxy2G01239' => 'aox', 'Aqoxy4G01870' => 'aox', 'Aqoxy7G00450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.36ZVTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71EM27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5D6C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH3WRE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3NCM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RIM768' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YB5YRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z36GDV' => 'arhy', 'AT1G08250' => 'ath', 'AT1G11790' => 'ath', 'AT2G27820' => 'ath', 'AT3G07630' => 'ath', 'AT3G44720' => 'ath', 'AT5G22630' => 'ath', 'ATR0693G304' => 'atr', 'ATR0794G109' => 'atr', 'ATR0820G120' => 'atr', 'ATR1159G064' => 'atr', 'Atru.chr10.2239' => 'acertr', 'Atru.chr3.3371' => 'acertr', 'Atru.chr6.3202' => 'acertr', 'AUR62006499' => 'cqu', 'AUR62012718' => 'cqu', 'AUR62021938' => 'cqu', 'AUR62023932' => 'cqu', 'AUR62025034' => 'cqu', 'AUR62025035' => 'cqu', 'AUR62038307' => 'cqu', 'AUR62043466' => 'cqu', 'BcaB02g10748' => 'bca', 'BcaB03g13231' => 'bca', 'BcaB03g14689' => 'bca', 'BcaB05g22716' => 'bca', 'BcaB06g28172' => 'bca', 'BcaB08g36413' => 'bca', 'BcaC01g02186' => 'bca', 'BcaC01g04272' => 'bca', 'BcaC02g08080' => 'bca', 'BcaC02g08227' => 'bca', 'BcaC03g13901' => 'bca', 'BcaC04g19593' => 'bca', 'BcaC04g20874' => 'bca', 'BcaC05g29557' => 'bca', 'BcaC06g35505' => 'bca', 'BcaC07g41954' => 'bca', 'BcaC07g41955' => 'bca', 'BcaC07g41956' => 'bca', 'BcaC07g42519' => 'bca', 'BcaC07g42520' => 'bca', 'BcaC07g42523' => 'bca', 'BcaC07g42524' => 'bca', 'BcaC07g42525' => 'bca', 'BcaC08g47480' => 'bca', 'BcaC08g47481' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00530' => 'bna', 'BolC2t07178H' => 'bol', 'BolC3t16567H' => 'bol', 'BolC4t27234H' => 'bol', 'BolC5t29728H' => 'bol', 'BolC5t34622H' => 'bol', 'BolC6t40321H' => 'bol', 'BolC7t42028H' => 'bol', 'BolC8t49125H' => 'bol', 'BolC8t52538H' => 'bol', 'BolC8t52539H' => 'bol', 'BolC9t56681H' => 'bol', 'BolC9t58266H' => 'bol', 'BolSC21t60294H' => 'bol', 'BraA02t05670Z' => 'bra', 'BraA03t12716Z' => 'bra', 'BraA04t17685Z' => 'bra', 'BraA05t22788Z' => 'bra', 'BraA06t24032Z' => 'bra', 'BraA06t25625Z' => 'bra', 'BraA07t27930Z' => 'bra', 'BraA08t35242Z' => 'bra', 'BraA09t38609Z' => 'bra', 'BraA10t43905Z' => 'bra', 'C02p11060' => 'bna', 'C03p42990' => 'bna', 'C03p67310' => 'bna', 'C04p56990' => 'bna', 'C04p58660' => 'bna', 'C05p09890' => 'bna', 'C05p59680' => 'bna', 'C06p19830' => 'bna', 'C06p53040' => 'bna', 'C07p15230' => 'bna', 'C08p50070' => 'bna', 'C08p50090' => 'bna', 'C09p38330' => 'bna', 'C09p53940' => 'bna', 'CAN.G1014.1' => 'can', 'CAN.G644.30' => 'can', 'CAN.G84.47' => 'can', 'CAN.G919.8' => 'can', 'CANSAT54G0113' => 'cansat', 'CANSAT54G1286' => 'cansat', 'CANSAT64G1020' => 'cansat', 'CARHR008080' => 'chi', 'CARHR008090' => 'chi', 'CARHR012130' => 'chi', 'CARHR038390' => 'chi', 'CARHR082330' => 'chi', 'CARHR120520' => 'chi', 'CARHR151470' => 'chi', 'CARHR190950' => 'chi', 'Carub.0001s0760' => 'cru', 'Carub.0001s1146' => 'cru', 'Carub.0003s0721' => 'cru', 'Carub.0004s0858' => 'cru', 'Carub.0005s1040' => 'cru', 'Carub.0006s2035' => 'cru', 'Carub.0015s0005' => 'cru', 'Ca_01607_v3' => 'car', 'Ca_01677_v3' => 'car', 'Ca_06087_v3' => 'car', 'Ca_19238_v3' => 'car', 'Ca_19373_v3' => 'car', 'Ca_21079_v3' => 'car', 'CBR_g54016' => 'cbr', 'CBR_g54018' => 'cbr', 'CBR_g54020' => 'cbr', 'Cc01_g09780' => 'ccan', 'Cc01_g11680' => 'ccan', 'Cc02_g15610' => 'ccan', 'Cc05_g04350' => 'ccan', 'Cc09_g01580' => 'ccan', 'CDE01G0795' => 'cde', 'CDE02G2024' => 'cde', 'CDE02G2260' => 'cde', 'CDE02G4561' => 'cde', 'CDE05G2733' => 'cde', 'CDE05G3422' => 'cde', 'CDE06G2003' => 'cde', 'CDE08G0576' => 'cde', 'CDE09G0048' => 'cde', 'CDE11G0805' => 'cde', 'Cfa003644' => 'cfa', 'Cfa006290' => 'cfa', 'Cfa010080' => 'cfa', 'Cfa011376' => 'cfa', 'Cfa011576' => 'cfa', 'Cfa011577' => 'cfa', 'Cfa014389' => 'cfa', 'Ciclev10006044m.g' => 'ccl', 'Ciclev10006954m.g' => 'ccl', 'Ciclev10015131m.g' => 'ccl', 'Ciclev10015580m.g' => 'ccl', 'Ciclev10028359m.g' => 'ccl', 'Ciclev10028573m.g' => 'ccl', 'CiPaw.03G159300' => 'cil', 'CiPaw.04G115100' => 'cil', 'CiPaw.09G092800' => 'cil', 'CiPaw.10G071800' => 'cil', 'CiPaw.13G105800' => 'cil', 'CiPaw.13G141000' => 'cil', 'CiPaw.14G103400' => 'cil', 'ClCG01G012700' => 'cla', 'ClCG01G012720' => 'cla', 'ClCG01G021920' => 'cla', 'ClCG02G008870' => 'cla', 'ClCG02G020840' => 'cla', 'ClCG02G021930' => 'cla', 'COL.COLO4_19302' => 'col', 'COL.COLO4_25262' => 'col', 'COL.COLO4_31788' => 'col', 'Cpa.g.c34684' => 'cpa', 'Cpa.g.c36520.1' => 'cpa', 'Cpa.g.c45626' => 'cpa', 'Cpa.g.sc121.17' => 'cpa', 'Cpa.g.sc13.22' => 'cpa', 'Cpa.g.sc87.88' => 'cpa', 'Cre06.g261800' => 'cre', 'CsaV3_1G014500' => 'csa', 'CsaV3_1G014510' => 'csa', 'CsaV3_2G034880' => 'csa', 'CsaV3_6G014760' => 'csa', 'CsaV3_6G021500' => 'csa', 'CsaV3_6G048980' => 'csa', 'CSS0002511' => 'camsi', 'CSS0007556' => 'camsi', 'CSS0008532' => 'camsi', 'CSS0009709' => 'camsi', 'CSS0010486' => 'camsi', 'CSS0016768' => 'camsi', 'CSS0023512' => 'camsi', 'CSS0025341' => 'camsi', 'CSS0027999' => 'camsi', 'CSS0028944' => 'camsi', 'CSS0032292' => 'camsi', 'CSS0032464' => 'camsi', 'CSS0037153' => 'camsi', 'CSS0039256' => 'camsi', 'CSS0048392' => 'camsi', 'CSS0050458' => 'camsi', 'DCAR_004224' => 'dca', 'DCAR_006147' => 'dca', 'DCAR_006465' => 'dca', 'DCAR_008159' => 'dca', 'DCAR_012164' => 'dca', 'DCAR_019764' => 'dca', 'Dinv05418' => 'din', 'Dinv10839' => 'din', 'Dinv12521' => 'din', 'Dinv13900' => 'din', 'Dinv29426' => 'din', 'Duzib150G0263' => 'dzi', 'Duzib168G1178' => 'dzi', 'Duzib168G1924' => 'dzi', 'Duzib170G0299' => 'dzi', 'Duzib170G0813' => 'dzi', 'Duzib235G1128' => 'dzi', 'Duzib248G1060' => 'dzi', 'ECA232G1910' => 'eca', 'ECA233G4621' => 'eca', 'ECA238G1216' => 'eca', 'ECA238G1784' => 'eca', 'ECA248G1242' => 'eca', 'EL10Ac8g20071' => 'bvu', 'EL10Ac9g21086' => 'bvu', 'EL10Ac9g22407' => 'bvu', 'EL10Ac9g22412' => 'bvu', 'Eucgr.A01119' => 'egr', 'Eucgr.E04043' => 'egr', 'Eucgr.J00428' => 'egr', 'Eucgr.J00958' => 'egr', 'FAN11G3091' => 'fan', 'FAN11G3651' => 'fan', 'FAN16G2566' => 'fan', 'FAN21G3155' => 'fan', 'FAN21G3400' => 'fan', 'FAN21G3543' => 'fan', 'FAN25G0234' => 'fan', 'FAN25G1422' => 'fan', 'FAN25G3392' => 'fan', 'FvH4_3g01940' => 'fve', 'FvH4_3g29870' => 'fve', 'FvH4_3g33680' => 'fve', 'Glyma.09G004200' => 'gma', 'Glyma.11G151288' => 'gma', 'Glyma.11G189100' => 'gma', 'Glyma.12G072500' => 'gma', 'Glyma.12G085500' => 'gma', 'Glyma.12G181800' => 'gma', 'Glyma.12G193000' => 'gma', 'Glyma.13G309300' => 'gma', 'Glyma.13G319000' => 'gma', 'Glyma.17G012600' => 'gma', 'Gohir.A06G148600' => 'ghi', 'Gohir.A07G115800' => 'ghi', 'Gohir.A08G003600' => 'ghi', 'Gohir.A09G093300' => 'ghi', 'Gohir.A09G105400' => 'ghi', 'Gohir.A09G105500' => 'ghi', 'Gohir.D06G154600' => 'ghi', 'Gohir.D07G120200' => 'ghi', 'Gohir.D08G013900' => 'ghi', 'Gohir.D09G093100' => 'ghi', 'Gohir.D09G102200' => 'ghi', 'Gohir.D09G102300' => 'ghi', 'Gorai.001G129400' => 'gra', 'Gorai.004G008200' => 'gra', 'Gorai.006G109800' => 'gra', 'Gorai.006G119500' => 'gra', 'Gorai.006G121300' => 'gra', 'Gorai.010G180700' => 'gra', 'GSVIVG01012716001' => 'vvi', 'GSVIVG01025118001' => 'vvi', 'GSVIVG01030439001' => 'vvi', 'GSVIVG01031397001' => 'vvi', 'HanXRQChr01g0004201' => 'han', 'HanXRQChr02g0054941' => 'han', 'HanXRQChr05g0141811' => 'han', 'HanXRQChr07g0197751' => 'han', 'HanXRQChr11g0346691' => 'han', 'HanXRQChr13g0396971' => 'han', 'HanXRQChr14g0432951' => 'han', 'HanXRQChr14g0452001' => 'han', 'HanXRQChr15g0496681' => 'han', 'HanXRQChr17g0557491' => 'han', 'HanXRQChr17g0557501' => 'han', 'Haze_06809' => 'cav', 'Haze_12852' => 'cav', 'Haze_15850' => 'cav', 'Haze_23446' => 'cav', 'Haze_23942' => 'cav', 'Haze_23943' => 'cav', 'Hma1.2p1_0091F.1_g046450' => 'hma', 'Hma1.2p1_0128F.1_g059910' => 'hma', 'Hma1.2p1_0249F.1_g102260' => 'hma', 'Hma1.2p1_0453F.1_g156190' => 'hma', 'Hma1.2p1_0695F.1_g204380' => 'hma', 'Hma1.2p1_0749F.1_g212650' => 'hma', 'Hma1.2p1_2156F.1_g315420' => 'hma', 'Hma1.2p1_2686F.1_g326940' => 'hma', 'HPP92_006428' => 'vpl', 'HPP92_012069' => 'vpl', 'HPP92_014129' => 'vpl', 'HPP92_014133' => 'vpl', 'HPP92_017315' => 'vpl', 'HPP92_026445' => 'vpl', 'HPP92_026446' => 'vpl', 'Hund00774' => 'sun', 'Hund07682' => 'sun', 'Hund21413' => 'sun', 'Hund23462' => 'sun', 'Hund23463' => 'sun', 'Lalb_Chr03g0027911' => 'lal', 'Lalb_Chr13g0304271' => 'lal', 'Lalb_Chr19g0137471' => 'lal', 'Lalb_Chr22g0350651' => 'lal', 'Lalb_Chr24g0395151' => 'lal', 'Lj1A1231T40' => 'lonja', 'Lj1A221T48' => 'lonja', 'Lj1C924T12' => 'lonja', 'Lj2C993G6' => 'lonja', 'Lj3g0005790' => 'lja', 'Lj3g0015432' => 'lja', 'Lj3g0017722' => 'lja', 'Lj3g0018497' => 'lja', 'Lj4g0025071' => 'lja', 'Lsat_1_v5_gn_1_129680' => 'lsa', 'Lsat_1_v5_gn_2_25321' => 'lsa', 'Lsat_1_v5_gn_2_95461' => 'lsa', 'Lsat_1_v5_gn_4_159620' => 'lsa', 'Lsat_1_v5_gn_6_41301' => 'lsa', 'Lsat_1_v5_gn_6_74660' => 'lsa', 'Lsat_1_v5_gn_7_11520' => 'lsa', 'Lsat_1_v5_gn_9_67680' => 'lsa', 'Manes.04G008300' => 'mes', 'Manes.04G008400' => 'mes', 'Manes.04G026500' => 'mes', 'Manes.10G135300' => 'mes', 'Manes.11G157300' => 'mes', 'Manes.12G074000' => 'mes', 'Manes.16G006200' => 'mes', 'Manes.17G026400' => 'mes', 'Mapoly0024s0086' => 'mpo', 'Mapoly0024s0087' => 'mpo', 'Mapoly0071s0057' => 'mpo', 'Mapoly0204s0012' => 'mpo', 'MBI04_g37681_MAGBIO' => 'mbi', 'MBI05_g17779_MAGBIO' => 'mbi', 'MBI12_g31184_MAGBIO' => 'mbi', 'MBI17_g11083_MAGBIO' => 'mbi', 'MBI18_g03883_MAGBIO' => 'mbi', 'MBI18_g28940_MAGBIO' => 'mbi', 'MCO01G690' => 'mco', 'MD03G1109900' => 'mdo', 'MD03G1134800' => 'mdo', 'MD05G1348000' => 'mdo', 'MD10G1322400' => 'mdo', 'MD11G1123300' => 'mdo', 'MD11G1157600' => 'mdo', 'Medtr2g084875' => 'mtr', 'Medtr2g088130' => 'mtr', 'Medtr4g055310' => 'mtr', 'Medtr4g061070' => 'mtr', 'Medtr4g132250' => 'mtr', 'MELO3C004795.2' => 'cme', 'MELO3C004797.2' => 'cme', 'MELO3C007396.2' => 'cme', 'MELO3C019277.2' => 'cme', 'MELO3C021449.2' => 'cme', 'MELO3C025736.2' => 'cme', 'Migut.D02175' => 'egut', 'Migut.H01573' => 'egut', 'Migut.M01327' => 'egut', 'Migut.N02513' => 'egut', 'MSTRG.14638' => 'ama', 'MSTRG.18632' => 'ama', 'MSTRG.7203' => 'ama', 'Nitab4.5_0000533g0140' => 'nta', 'Nitab4.5_0000888g0150' => 'nta', 'Nitab4.5_0001453g0040' => 'nta', 'Nitab4.5_0002827g0090' => 'nta', 'Nitab4.5_0003082g0040' => 'nta', 'Nitab4.5_0007799g0040' => 'nta', 'Nitab4.5_0008983g0010' => 'nta', 'Nitab4.5_0009017g0020' => 'nta', 'Nn1g02132' => 'nnu', 'Nn1g03492' => 'nnu', 'Nn1g03493' => 'nnu', 'Nn1g03494' => 'nnu', 'Nn1g07164' => 'nnu', 'Nn1g07291' => 'nnu', 'Nn2g10655' => 'nnu', 'Nn2g11652' => 'nnu', 'Nn2g14008' => 'nnu', 'Nn3g17476' => 'nnu', 'Nn3g17477' => 'nnu', 'Nn4g22370' => 'nnu', 'Nn4g25255' => 'nnu', 'Nn5g27755' => 'nnu', 'Nn6g34260' => 'nnu', 'Nn6g35041' => 'nnu', 'Oeu005924.1' => 'oeu', 'Oeu008383.1' => 'oeu', 'Oeu014928.1' => 'oeu', 'Oeu019889.1' => 'oeu', 'Oeu022271.1' => 'oeu', 'Oeu025271.1' => 'oeu', 'Oeu036302.1' => 'oeu', 'Oeu044100.1' => 'oeu', 'Os01g0528300' => 'osa', 'Os03g0286200' => 'osa', 'Os04g0406600' => 'osa', 'Os07g0512000' => 'osa', 'Os07g0694600' => 'osa', 'Os08g0411000' => 'osa', 'Os09g0565700' => 'osa', 'Os09g0566050' => 'osa', 'Os10g0523700' => 'osa', 'Peaxi162Scf00002g00514' => 'pax', 'Peaxi162Scf00047g01817' => 'pax', 'Peaxi162Scf00114g00001' => 'pax', 'Peaxi162Scf00147g00613' => 'pax', 'Peaxi162Scf00389g00425' => 'pax', 'PGR042G1139' => 'pgr', 'PGR042G3273' => 'pgr', 'PGR102G2180' => 'pgr', 'PGR119G0234' => 'pgr', 'PGR119G0668' => 'pgr', 'PGSC0003DMG400007122' => 'stu', 'PGSC0003DMG400016478' => 'stu', 'PGSC0003DMG400025374' => 'stu', 'PGSC0003DMG400026536' => 'stu', 'Phvul.003G079600' => 'pvu', 'Phvul.005G115600' => 'pvu', 'Phvul.005G127100' => 'pvu', 'Phvul.006G149500' => 'pvu', 'Phvul.006G149600' => 'pvu', 'Phvul.011G071800' => 'pvu', 'Phvul.011G090400' => 'pvu', 'Potri.004G013400' => 'ptr', 'Potri.004G188100' => 'ptr', 'Potri.008G195500' => 'ptr', 'Potri.009G148800' => 'ptr', 'Potri.011G004700' => 'ptr', 'Pp3c17_22810' => 'ppa', 'Pp3c18_4480' => 'ppa', 'Pp3c19_13030' => 'ppa', 'Pp3c1_33620' => 'ppa', 'Pp3c2_9380' => 'ppa', 'PRCOL_00001023' => 'pco', 'Prupe.3G216300' => 'ppe', 'Prupe.4G019500' => 'ppe', 'Prupe.6G092500' => 'ppe', 'Prupe.6G119200' => 'ppe', 'Psat0s1945g0080' => 'psa', 'Psat0s4167g0040' => 'psa', 'Psat1g185800' => 'psa', 'Psat4g006440' => 'psa', 'Psat4g006480' => 'psa', 'Psat4g168120' => 'psa', 'Psat5g255680' => 'psa', 'Psat5g261760' => 'psa', 'Psat7g222120' => 'psa', 'PSO063G7252' => 'pso', 'PSO170G4778' => 'pso', 'PSO210G2249' => 'pso', 'PSO339G2411' => 'pso', 'PSO339G2457' => 'pso', 'PSO339G2854' => 'pso', 'PSO339G4288' => 'pso', 'PSO339G4615' => 'pso', 'PSO384G2796' => 'pso', 'PSO384G2940' => 'pso', 'PSO384G4227' => 'pso', 'PSO478G1425' => 'pso', 'PSO541G3863' => 'pso', 'PSO675G0507' => 'pso', 'PSO782G0338' => 'pso', 'PSO832G0644' => 'pso', 'QL01p013664' => 'qlo', 'QL01p036598' => 'qlo', 'QL05p072984' => 'qlo', 'QL08p005768' => 'qlo', 'QL08p032743' => 'qlo', 'QL93p0073_0439' => 'qlo', 'QL93p0073_0444' => 'qlo', 'RcHm_v2.0_Chr5g0002851' => 'rch', 'RcHm_v2.0_Chr5g0055201' => 'rch', 'RcHm_v2.0_Chr5g0061191' => 'rch', 'RcHm_v2.0_Chr7g0203231' => 'rch', 'Rhsim01G0208100' => 'rsi', 'Rhsim01G0208200' => 'rsi', 'Rhsim02G0106500' => 'rsi', 'Rhsim03G0107900' => 'rsi', 'Rhsim06G0163400' => 'rsi', 'Rhsim13G0105200' => 'rsi', 'Sabra04G0006300' => 'sbr', 'Sabra04G0127000' => 'sbr', 'Sabra08G0148700' => 'sbr', 'Sabra09G0117400' => 'sbr', 'SalBow1G3326' => 'sbo', 'SalBow3G3228' => 'sbo', 'SalBow6G1634' => 'sbo', 'SalBow6G3603' => 'sbo', 'SalBow6G5266' => 'sbo', 'SalBow7G2265' => 'sbo', 'SalBow8G0850' => 'sbo', 'SalBow8G2592' => 'sbo', 'Sc05g0009240' => 'sci', 'Sc12g0002300' => 'sci', 'Sc21g0000100' => 'sci', 'Sc21g0004720' => 'sci', 'Sed0002949' => 'sed', 'Sed0004114' => 'sed', 'Sed0004306' => 'sed', 'Sed0006172' => 'sed', 'Sed0008413' => 'sed', 'Sed0013809' => 'sed', 'Sed0019556' => 'sed', 'SEGI_03570' => 'sgi', 'SEGI_07859' => 'sgi', 'SEGI_15042' => 'sgi', 'SEGI_16263' => 'sgi', 'SEGI_16552' => 'sgi', 'SEGI_24331' => 'sgi', 'SEGI_27316' => 'sgi', 'SEGI_29521' => 'sgi', 'SEGI_41342' => 'sgi', 'SGA_v2.0_scaffold27G11617' => 'sas', 'SGA_v2.0_scaffold316G48428' => 'sas', 'SGA_v2.0_scaffold49G18261' => 'sas', 'SGA_v2.0_scaffold7G03831' => 'sas', 'SGA_v2.0_scaffold93G28359' => 'sas', 'SHI02210' => 'shi', 'SHI06028' => 'shi', 'SHI06321' => 'shi', 'SMO111G0012' => 'smo', 'SMO228G0080' => 'smo', 'SMO356G0756' => 'smo', 'Solyc02g080620.3' => 'sly', 'Solyc06g074530.1' => 'sly', 'Solyc11g066890.1' => 'sly', 'Solyc11g072520.3' => 'sly', 'Sopen02g025330' => 'spe', 'Sopen06g031000' => 'spe', 'Sopen09g008240' => 'spe', 'Sopen09g025210' => 'spe', 'Sopen11g026600' => 'spe', 'Sopen11g030170' => 'spe', 'Sp1g10420' => 'spa', 'Sp3g06570' => 'spa', 'Sp4g10660' => 'spa', 'Sp5g16460' => 'spa', 'Sp6g22710' => 'spa', 'TAR365G0112' => 'tar', 'TAR369G0717' => 'tar', 'TAR374G0976' => 'tar', 'TAR623G1128' => 'tar', 'TAR626G1937' => 'tar', 'TAR627G0123' => 'tar', 'TAR628G0305' => 'tar', 'TAR636G1176' => 'tar', 'TAR636G2442' => 'tar', 'THA.LOC104800556' => 'tha', 'THA.LOC104809501' => 'tha', 'THA.LOC104815126' => 'tha', 'THA.LOC104815732' => 'tha', 'THA.LOC104823528' => 'tha', 'Thecc.02G365600' => 'tca', 'Thecc.06G222300' => 'tca', 'Thecc.09G261800' => 'tca', 'Thecc.09G291400' => 'tca', 'Thhalv10003028m.g' => 'esa', 'Thhalv10007886m.g' => 'esa', 'Thhalv10016085m.g' => 'esa', 'Thhalv10016681m.g' => 'esa', 'Thhalv10020951m.g' => 'esa', 'TPR.G15598' => 'tpr', 'TPR.G29305' => 'tpr', 'TPR.G32395' => 'tpr', 'TPR.G36998' => 'tpr', 'TPR.G4227' => 'tpr', 'TWI18G1433' => 'twi', 'TWI31G0755' => 'twi', 'TWI38G0912' => 'twi', 'TWI75G1097' => 'twi', 'TWI75G1619' => 'twi', 'TWI79G1336' => 'twi', 'unitig_0.g943' => 'ugi', 'unitig_0.g944' => 'ugi', 'unitig_22.g6646' => 'ugi', 'unitig_37.g12681' => 'ugi', 'unitig_8.g3290' => 'ugi', 'vmacro03278' => 'vma', 'vmacro12197' => 'vma', 'vmacro14478' => 'vma', 'vmacro15787' => 'vma', 'vmacro15789' => 'vma', 'vmacro15790' => 'vma', 'vmacro15806' => 'vma', 'vmacro22907' => 'vma', 'vmacro22908' => 'vma', 'vmacro22909' => 'vma', 'vmacro23108' => 'vma', 'VMungo0540G0540' => 'vmu', 'VMungo0540G2468' => 'vmu', 'VMungo1080G0390' => 'vmu', 'VMungo1080G1165' => 'vmu', 'VMungo1127G0170' => 'vmu', 'VMungo1127G2099' => 'vmu', 'VMungo1215G3013' => 'vmu', 'Zm00001eb013110' => 'zma', 'Zm00001eb084260' => 'zma', 'Zm00001eb096110' => 'zma', 'Zm00001eb217510' => 'zma', 'Zm00001eb322550' => 'zma', 'Zm00001eb390770' => 'zma', 'Zm00001eb397170' => 'zma', 'Zm00001eb404610' => 'zma', 'Zm00001eb421790' => 'zma' ), 'gf_id' => 'HOM05D000911', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000911' ), 'data_identifier' => 'HOM05D000911', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000911', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27780' => 'bna', 'A03p35380' => 'bna', 'A04p21160' => 'bna', 'A05p40570' => 'bna', 'A06p26900' => 'bna', 'A08p33230' => 'bna', 'A09p65960' => 'bna', 'A10p18290' => 'bna', 'Aa31LG1G12990' => 'aar', 'Aa31LG1G2980' => 'aar', 'Aa31LG4G14320' => 'aar', 'Aa31LG7G11800' => 'aar', 'Aa31sc36G50' => 'aar', 'Aa31sc36G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3721' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5459' => 'aag', 'Actinidia03028' => 'ach', 'Actinidia03753' => 'ach', 'Actinidia04187' => 'ach', 'Actinidia05509' => 'ach', 'Actinidia24180' => 'ach', 'Actinidia26906' => 'ach', 'Actinidia37097' => 'ach', 'Actinidia38249' => 'ach', 'Ah.01g003470' => 'amhyb', 'Ah.01g004580' => 'amhyb', 'Ah.01g014850' => 'amhyb', 'Ah.01g016830' => 'amhyb', 'Ah.14g088000' => 'amhyb', 'AL1G22980' => 'aly', 'AL3G18990' => 'aly', 'AL4G22440' => 'aly', 'AL4G33180' => 'aly', 'AL5G22920' => 'aly', 'AL6G33660' => 'aly', 'AL8G20720' => 'aly', 'Aqoxy1G00935' => 'aox', 'Aqoxy1G02094' => 'aox', 'Aqoxy2G01239' => 'aox', 'Aqoxy4G01870' => 'aox', 'Aqoxy7G00450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.36ZVTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71EM27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5D6C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH3WRE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3NCM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RIM768' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YB5YRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z36GDV' => 'arhy', 'AT1G08250' => 'ath', 'AT1G11790' => 'ath', 'AT2G27820' => 'ath', 'AT3G07630' => 'ath', 'AT3G44720' => 'ath', 'AT5G22630' => 'ath', 'ATR0693G304' => 'atr', 'ATR0794G109' => 'atr', 'ATR0820G120' => 'atr', 'ATR1159G064' => 'atr', 'Atru.chr10.2239' => 'acertr', 'Atru.chr3.3371' => 'acertr', 'Atru.chr6.3202' => 'acertr', 'AUR62006499' => 'cqu', 'AUR62012718' => 'cqu', 'AUR62021938' => 'cqu', 'AUR62023932' => 'cqu', 'AUR62025034' => 'cqu', 'AUR62025035' => 'cqu', 'AUR62038307' => 'cqu', 'AUR62043466' => 'cqu', 'BcaB02g10748' => 'bca', 'BcaB03g13231' => 'bca', 'BcaB03g14689' => 'bca', 'BcaB05g22716' => 'bca', 'BcaB06g28172' => 'bca', 'BcaB08g36413' => 'bca', 'BcaC01g02186' => 'bca', 'BcaC01g04272' => 'bca', 'BcaC02g08080' => 'bca', 'BcaC02g08227' => 'bca', 'BcaC03g13901' => 'bca', 'BcaC04g19593' => 'bca', 'BcaC04g20874' => 'bca', 'BcaC05g29557' => 'bca', 'BcaC06g35505' => 'bca', 'BcaC07g41954' => 'bca', 'BcaC07g41955' => 'bca', 'BcaC07g41956' => 'bca', 'BcaC07g42519' => 'bca', 'BcaC07g42520' => 'bca', 'BcaC07g42523' => 'bca', 'BcaC07g42524' => 'bca', 'BcaC07g42525' => 'bca', 'BcaC08g47480' => 'bca', 'BcaC08g47481' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00530' => 'bna', 'BolC2t07178H' => 'bol', 'BolC3t16567H' => 'bol', 'BolC4t27234H' => 'bol', 'BolC5t29728H' => 'bol', 'BolC5t34622H' => 'bol', 'BolC6t40321H' => 'bol', 'BolC7t42028H' => 'bol', 'BolC8t49125H' => 'bol', 'BolC8t52538H' => 'bol', 'BolC8t52539H' => 'bol', 'BolC9t56681H' => 'bol', 'BolC9t58266H' => 'bol', 'BolSC21t60294H' => 'bol', 'BraA02t05670Z' => 'bra', 'BraA03t12716Z' => 'bra', 'BraA04t17685Z' => 'bra', 'BraA05t22788Z' => 'bra', 'BraA06t24032Z' => 'bra', 'BraA06t25625Z' => 'bra', 'BraA07t27930Z' => 'bra', 'BraA08t35242Z' => 'bra', 'BraA09t38609Z' => 'bra', 'BraA10t43905Z' => 'bra', 'C02p11060' => 'bna', 'C03p42990' => 'bna', 'C03p67310' => 'bna', 'C04p56990' => 'bna', 'C04p58660' => 'bna', 'C05p09890' => 'bna', 'C05p59680' => 'bna', 'C06p19830' => 'bna', 'C06p53040' => 'bna', 'C07p15230' => 'bna', 'C08p50070' => 'bna', 'C08p50090' => 'bna', 'C09p38330' => 'bna', 'C09p53940' => 'bna', 'CAN.G1014.1' => 'can', 'CAN.G644.30' => 'can', 'CAN.G84.47' => 'can', 'CAN.G919.8' => 'can', 'CANSAT54G0113' => 'cansat', 'CANSAT54G1286' => 'cansat', 'CANSAT64G1020' => 'cansat', 'CARHR008080' => 'chi', 'CARHR008090' => 'chi', 'CARHR012130' => 'chi', 'CARHR038390' => 'chi', 'CARHR082330' => 'chi', 'CARHR120520' => 'chi', 'CARHR151470' => 'chi', 'CARHR190950' => 'chi', 'Carub.0001s0760' => 'cru', 'Carub.0001s1146' => 'cru', 'Carub.0003s0721' => 'cru', 'Carub.0004s0858' => 'cru', 'Carub.0005s1040' => 'cru', 'Carub.0006s2035' => 'cru', 'Carub.0015s0005' => 'cru', 'Ca_01607_v3' => 'car', 'Ca_01677_v3' => 'car', 'Ca_06087_v3' => 'car', 'Ca_19238_v3' => 'car', 'Ca_19373_v3' => 'car', 'Ca_21079_v3' => 'car', 'CBR_g54016' => 'cbr', 'CBR_g54018' => 'cbr', 'CBR_g54020' => 'cbr', 'Cc01_g09780' => 'ccan', 'Cc01_g11680' => 'ccan', 'Cc02_g15610' => 'ccan', 'Cc05_g04350' => 'ccan', 'Cc09_g01580' => 'ccan', 'CDE01G0795' => 'cde', 'CDE02G2024' => 'cde', 'CDE02G2260' => 'cde', 'CDE02G4561' => 'cde', 'CDE05G2733' => 'cde', 'CDE05G3422' => 'cde', 'CDE06G2003' => 'cde', 'CDE08G0576' => 'cde', 'CDE09G0048' => 'cde', 'CDE11G0805' => 'cde', 'Cfa003644' => 'cfa', 'Cfa006290' => 'cfa', 'Cfa010080' => 'cfa', 'Cfa011376' => 'cfa', 'Cfa011576' => 'cfa', 'Cfa011577' => 'cfa', 'Cfa014389' => 'cfa', 'Ciclev10006044m.g' => 'ccl', 'Ciclev10006954m.g' => 'ccl', 'Ciclev10015131m.g' => 'ccl', 'Ciclev10015580m.g' => 'ccl', 'Ciclev10028359m.g' => 'ccl', 'Ciclev10028573m.g' => 'ccl', 'CiPaw.03G159300' => 'cil', 'CiPaw.04G115100' => 'cil', 'CiPaw.09G092800' => 'cil', 'CiPaw.10G071800' => 'cil', 'CiPaw.13G105800' => 'cil', 'CiPaw.13G141000' => 'cil', 'CiPaw.14G103400' => 'cil', 'ClCG01G012700' => 'cla', 'ClCG01G012720' => 'cla', 'ClCG01G021920' => 'cla', 'ClCG02G008870' => 'cla', 'ClCG02G020840' => 'cla', 'ClCG02G021930' => 'cla', 'COL.COLO4_19302' => 'col', 'COL.COLO4_25262' => 'col', 'COL.COLO4_31788' => 'col', 'Cpa.g.c34684' => 'cpa', 'Cpa.g.c36520.1' => 'cpa', 'Cpa.g.c45626' => 'cpa', 'Cpa.g.sc121.17' => 'cpa', 'Cpa.g.sc13.22' => 'cpa', 'Cpa.g.sc87.88' => 'cpa', 'Cre06.g261800' => 'cre', 'CsaV3_1G014500' => 'csa', 'CsaV3_1G014510' => 'csa', 'CsaV3_2G034880' => 'csa', 'CsaV3_6G014760' => 'csa', 'CsaV3_6G021500' => 'csa', 'CsaV3_6G048980' => 'csa', 'CSS0002511' => 'camsi', 'CSS0007556' => 'camsi', 'CSS0008532' => 'camsi', 'CSS0009709' => 'camsi', 'CSS0010486' => 'camsi', 'CSS0016768' => 'camsi', 'CSS0023512' => 'camsi', 'CSS0025341' => 'camsi', 'CSS0027999' => 'camsi', 'CSS0028944' => 'camsi', 'CSS0032292' => 'camsi', 'CSS0032464' => 'camsi', 'CSS0037153' => 'camsi', 'CSS0039256' => 'camsi', 'CSS0048392' => 'camsi', 'CSS0050458' => 'camsi', 'DCAR_004224' => 'dca', 'DCAR_006147' => 'dca', 'DCAR_006465' => 'dca', 'DCAR_008159' => 'dca', 'DCAR_012164' => 'dca', 'DCAR_019764' => 'dca', 'Dinv05418' => 'din', 'Dinv10839' => 'din', 'Dinv12521' => 'din', 'Dinv13900' => 'din', 'Dinv29426' => 'din', 'Duzib150G0263' => 'dzi', 'Duzib168G1178' => 'dzi', 'Duzib168G1924' => 'dzi', 'Duzib170G0299' => 'dzi', 'Duzib170G0813' => 'dzi', 'Duzib235G1128' => 'dzi', 'Duzib248G1060' => 'dzi', 'ECA232G1910' => 'eca', 'ECA233G4621' => 'eca', 'ECA238G1216' => 'eca', 'ECA238G1784' => 'eca', 'ECA248G1242' => 'eca', 'EL10Ac8g20071' => 'bvu', 'EL10Ac9g21086' => 'bvu', 'EL10Ac9g22407' => 'bvu', 'EL10Ac9g22412' => 'bvu', 'Eucgr.A01119' => 'egr', 'Eucgr.E04043' => 'egr', 'Eucgr.J00428' => 'egr', 'Eucgr.J00958' => 'egr', 'FAN11G3091' => 'fan', 'FAN11G3651' => 'fan', 'FAN16G2566' => 'fan', 'FAN21G3155' => 'fan', 'FAN21G3400' => 'fan', 'FAN21G3543' => 'fan', 'FAN25G0234' => 'fan', 'FAN25G1422' => 'fan', 'FAN25G3392' => 'fan', 'FvH4_3g01940' => 'fve', 'FvH4_3g29870' => 'fve', 'FvH4_3g33680' => 'fve', 'Glyma.09G004200' => 'gma', 'Glyma.11G151288' => 'gma', 'Glyma.11G189100' => 'gma', 'Glyma.12G072500' => 'gma', 'Glyma.12G085500' => 'gma', 'Glyma.12G181800' => 'gma', 'Glyma.12G193000' => 'gma', 'Glyma.13G309300' => 'gma', 'Glyma.13G319000' => 'gma', 'Glyma.17G012600' => 'gma', 'Gohir.A06G148600' => 'ghi', 'Gohir.A07G115800' => 'ghi', 'Gohir.A08G003600' => 'ghi', 'Gohir.A09G093300' => 'ghi', 'Gohir.A09G105400' => 'ghi', 'Gohir.A09G105500' => 'ghi', 'Gohir.D06G154600' => 'ghi', 'Gohir.D07G120200' => 'ghi', 'Gohir.D08G013900' => 'ghi', 'Gohir.D09G093100' => 'ghi', 'Gohir.D09G102200' => 'ghi', 'Gohir.D09G102300' => 'ghi', 'Gorai.001G129400' => 'gra', 'Gorai.004G008200' => 'gra', 'Gorai.006G109800' => 'gra', 'Gorai.006G119500' => 'gra', 'Gorai.006G121300' => 'gra', 'Gorai.010G180700' => 'gra', 'GSVIVG01012716001' => 'vvi', 'GSVIVG01025118001' => 'vvi', 'GSVIVG01030439001' => 'vvi', 'GSVIVG01031397001' => 'vvi', 'HanXRQChr01g0004201' => 'han', 'HanXRQChr02g0054941' => 'han', 'HanXRQChr05g0141811' => 'han', 'HanXRQChr07g0197751' => 'han', 'HanXRQChr11g0346691' => 'han', 'HanXRQChr13g0396971' => 'han', 'HanXRQChr14g0432951' => 'han', 'HanXRQChr14g0452001' => 'han', 'HanXRQChr15g0496681' => 'han', 'HanXRQChr17g0557491' => 'han', 'HanXRQChr17g0557501' => 'han', 'Haze_06809' => 'cav', 'Haze_12852' => 'cav', 'Haze_15850' => 'cav', 'Haze_23446' => 'cav', 'Haze_23942' => 'cav', 'Haze_23943' => 'cav', 'Hma1.2p1_0091F.1_g046450' => 'hma', 'Hma1.2p1_0128F.1_g059910' => 'hma', 'Hma1.2p1_0249F.1_g102260' => 'hma', 'Hma1.2p1_0453F.1_g156190' => 'hma', 'Hma1.2p1_0695F.1_g204380' => 'hma', 'Hma1.2p1_0749F.1_g212650' => 'hma', 'Hma1.2p1_2156F.1_g315420' => 'hma', 'Hma1.2p1_2686F.1_g326940' => 'hma', 'HPP92_006428' => 'vpl', 'HPP92_012069' => 'vpl', 'HPP92_014129' => 'vpl', 'HPP92_014133' => 'vpl', 'HPP92_017315' => 'vpl', 'HPP92_026445' => 'vpl', 'HPP92_026446' => 'vpl', 'Hund00774' => 'sun', 'Hund07682' => 'sun', 'Hund21413' => 'sun', 'Hund23462' => 'sun', 'Hund23463' => 'sun', 'Lalb_Chr03g0027911' => 'lal', 'Lalb_Chr13g0304271' => 'lal', 'Lalb_Chr19g0137471' => 'lal', 'Lalb_Chr22g0350651' => 'lal', 'Lalb_Chr24g0395151' => 'lal', 'Lj1A1231T40' => 'lonja', 'Lj1A221T48' => 'lonja', 'Lj1C924T12' => 'lonja', 'Lj2C993G6' => 'lonja', 'Lj3g0005790' => 'lja', 'Lj3g0015432' => 'lja', 'Lj3g0017722' => 'lja', 'Lj3g0018497' => 'lja', 'Lj4g0025071' => 'lja', 'Lsat_1_v5_gn_1_129680' => 'lsa', 'Lsat_1_v5_gn_2_25321' => 'lsa', 'Lsat_1_v5_gn_2_95461' => 'lsa', 'Lsat_1_v5_gn_4_159620' => 'lsa', 'Lsat_1_v5_gn_6_41301' => 'lsa', 'Lsat_1_v5_gn_6_74660' => 'lsa', 'Lsat_1_v5_gn_7_11520' => 'lsa', 'Lsat_1_v5_gn_9_67680' => 'lsa', 'Manes.04G008300' => 'mes', 'Manes.04G008400' => 'mes', 'Manes.04G026500' => 'mes', 'Manes.10G135300' => 'mes', 'Manes.11G157300' => 'mes', 'Manes.12G074000' => 'mes', 'Manes.16G006200' => 'mes', 'Manes.17G026400' => 'mes', 'Mapoly0024s0086' => 'mpo', 'Mapoly0024s0087' => 'mpo', 'Mapoly0071s0057' => 'mpo', 'Mapoly0204s0012' => 'mpo', 'MBI04_g37681_MAGBIO' => 'mbi', 'MBI05_g17779_MAGBIO' => 'mbi', 'MBI12_g31184_MAGBIO' => 'mbi', 'MBI17_g11083_MAGBIO' => 'mbi', 'MBI18_g03883_MAGBIO' => 'mbi', 'MBI18_g28940_MAGBIO' => 'mbi', 'MCO01G690' => 'mco', 'MD03G1109900' => 'mdo', 'MD03G1134800' => 'mdo', 'MD05G1348000' => 'mdo', 'MD10G1322400' => 'mdo', 'MD11G1123300' => 'mdo', 'MD11G1157600' => 'mdo', 'Medtr2g084875' => 'mtr', 'Medtr2g088130' => 'mtr', 'Medtr4g055310' => 'mtr', 'Medtr4g061070' => 'mtr', 'Medtr4g132250' => 'mtr', 'MELO3C004795.2' => 'cme', 'MELO3C004797.2' => 'cme', 'MELO3C007396.2' => 'cme', 'MELO3C019277.2' => 'cme', 'MELO3C021449.2' => 'cme', 'MELO3C025736.2' => 'cme', 'Migut.D02175' => 'egut', 'Migut.H01573' => 'egut', 'Migut.M01327' => 'egut', 'Migut.N02513' => 'egut', 'MSTRG.14638' => 'ama', 'MSTRG.18632' => 'ama', 'MSTRG.7203' => 'ama', 'Nitab4.5_0000533g0140' => 'nta', 'Nitab4.5_0000888g0150' => 'nta', 'Nitab4.5_0001453g0040' => 'nta', 'Nitab4.5_0002827g0090' => 'nta', 'Nitab4.5_0003082g0040' => 'nta', 'Nitab4.5_0007799g0040' => 'nta', 'Nitab4.5_0008983g0010' => 'nta', 'Nitab4.5_0009017g0020' => 'nta', 'Nn1g02132' => 'nnu', 'Nn1g03492' => 'nnu', 'Nn1g03493' => 'nnu', 'Nn1g03494' => 'nnu', 'Nn1g07164' => 'nnu', 'Nn1g07291' => 'nnu', 'Nn2g10655' => 'nnu', 'Nn2g11652' => 'nnu', 'Nn2g14008' => 'nnu', 'Nn3g17476' => 'nnu', 'Nn3g17477' => 'nnu', 'Nn4g22370' => 'nnu', 'Nn4g25255' => 'nnu', 'Nn5g27755' => 'nnu', 'Nn6g34260' => 'nnu', 'Nn6g35041' => 'nnu', 'Oeu005924.1' => 'oeu', 'Oeu008383.1' => 'oeu', 'Oeu014928.1' => 'oeu', 'Oeu019889.1' => 'oeu', 'Oeu022271.1' => 'oeu', 'Oeu025271.1' => 'oeu', 'Oeu036302.1' => 'oeu', 'Oeu044100.1' => 'oeu', 'Os01g0528300' => 'osa', 'Os03g0286200' => 'osa', 'Os04g0406600' => 'osa', 'Os07g0512000' => 'osa', 'Os07g0694600' => 'osa', 'Os08g0411000' => 'osa', 'Os09g0565700' => 'osa', 'Os09g0566050' => 'osa', 'Os10g0523700' => 'osa', 'Peaxi162Scf00002g00514' => 'pax', 'Peaxi162Scf00047g01817' => 'pax', 'Peaxi162Scf00114g00001' => 'pax', 'Peaxi162Scf00147g00613' => 'pax', 'Peaxi162Scf00389g00425' => 'pax', 'PGR042G1139' => 'pgr', 'PGR042G3273' => 'pgr', 'PGR102G2180' => 'pgr', 'PGR119G0234' => 'pgr', 'PGR119G0668' => 'pgr', 'PGSC0003DMG400007122' => 'stu', 'PGSC0003DMG400016478' => 'stu', 'PGSC0003DMG400025374' => 'stu', 'PGSC0003DMG400026536' => 'stu', 'Phvul.003G079600' => 'pvu', 'Phvul.005G115600' => 'pvu', 'Phvul.005G127100' => 'pvu', 'Phvul.006G149500' => 'pvu', 'Phvul.006G149600' => 'pvu', 'Phvul.011G071800' => 'pvu', 'Phvul.011G090400' => 'pvu', 'Potri.004G013400' => 'ptr', 'Potri.004G188100' => 'ptr', 'Potri.008G195500' => 'ptr', 'Potri.009G148800' => 'ptr', 'Potri.011G004700' => 'ptr', 'Pp3c17_22810' => 'ppa', 'Pp3c18_4480' => 'ppa', 'Pp3c19_13030' => 'ppa', 'Pp3c1_33620' => 'ppa', 'Pp3c2_9380' => 'ppa', 'PRCOL_00001023' => 'pco', 'Prupe.3G216300' => 'ppe', 'Prupe.4G019500' => 'ppe', 'Prupe.6G092500' => 'ppe', 'Prupe.6G119200' => 'ppe', 'Psat0s1945g0080' => 'psa', 'Psat0s4167g0040' => 'psa', 'Psat1g185800' => 'psa', 'Psat4g006440' => 'psa', 'Psat4g006480' => 'psa', 'Psat4g168120' => 'psa', 'Psat5g255680' => 'psa', 'Psat5g261760' => 'psa', 'Psat7g222120' => 'psa', 'PSO063G7252' => 'pso', 'PSO170G4778' => 'pso', 'PSO210G2249' => 'pso', 'PSO339G2411' => 'pso', 'PSO339G2457' => 'pso', 'PSO339G2854' => 'pso', 'PSO339G4288' => 'pso', 'PSO339G4615' => 'pso', 'PSO384G2796' => 'pso', 'PSO384G2940' => 'pso', 'PSO384G4227' => 'pso', 'PSO478G1425' => 'pso', 'PSO541G3863' => 'pso', 'PSO675G0507' => 'pso', 'PSO782G0338' => 'pso', 'PSO832G0644' => 'pso', 'QL01p013664' => 'qlo', 'QL01p036598' => 'qlo', 'QL05p072984' => 'qlo', 'QL08p005768' => 'qlo', 'QL08p032743' => 'qlo', 'QL93p0073_0439' => 'qlo', 'QL93p0073_0444' => 'qlo', 'RcHm_v2.0_Chr5g0002851' => 'rch', 'RcHm_v2.0_Chr5g0055201' => 'rch', 'RcHm_v2.0_Chr5g0061191' => 'rch', 'RcHm_v2.0_Chr7g0203231' => 'rch', 'Rhsim01G0208100' => 'rsi', 'Rhsim01G0208200' => 'rsi', 'Rhsim02G0106500' => 'rsi', 'Rhsim03G0107900' => 'rsi', 'Rhsim06G0163400' => 'rsi', 'Rhsim13G0105200' => 'rsi', 'Sabra04G0006300' => 'sbr', 'Sabra04G0127000' => 'sbr', 'Sabra08G0148700' => 'sbr', 'Sabra09G0117400' => 'sbr', 'SalBow1G3326' => 'sbo', 'SalBow3G3228' => 'sbo', 'SalBow6G1634' => 'sbo', 'SalBow6G3603' => 'sbo', 'SalBow6G5266' => 'sbo', 'SalBow7G2265' => 'sbo', 'SalBow8G0850' => 'sbo', 'SalBow8G2592' => 'sbo', 'Sc05g0009240' => 'sci', 'Sc12g0002300' => 'sci', 'Sc21g0000100' => 'sci', 'Sc21g0004720' => 'sci', 'Sed0002949' => 'sed', 'Sed0004114' => 'sed', 'Sed0004306' => 'sed', 'Sed0006172' => 'sed', 'Sed0008413' => 'sed', 'Sed0013809' => 'sed', 'Sed0019556' => 'sed', 'SEGI_03570' => 'sgi', 'SEGI_07859' => 'sgi', 'SEGI_15042' => 'sgi', 'SEGI_16263' => 'sgi', 'SEGI_16552' => 'sgi', 'SEGI_24331' => 'sgi', 'SEGI_27316' => 'sgi', 'SEGI_29521' => 'sgi', 'SEGI_41342' => 'sgi', 'SGA_v2.0_scaffold27G11617' => 'sas', 'SGA_v2.0_scaffold316G48428' => 'sas', 'SGA_v2.0_scaffold49G18261' => 'sas', 'SGA_v2.0_scaffold7G03831' => 'sas', 'SGA_v2.0_scaffold93G28359' => 'sas', 'SHI02210' => 'shi', 'SHI06028' => 'shi', 'SHI06321' => 'shi', 'SMO111G0012' => 'smo', 'SMO228G0080' => 'smo', 'SMO356G0756' => 'smo', 'Solyc02g080620.3' => 'sly', 'Solyc06g074530.1' => 'sly', 'Solyc11g066890.1' => 'sly', 'Solyc11g072520.3' => 'sly', 'Sopen02g025330' => 'spe', 'Sopen06g031000' => 'spe', 'Sopen09g008240' => 'spe', 'Sopen09g025210' => 'spe', 'Sopen11g026600' => 'spe', 'Sopen11g030170' => 'spe', 'Sp1g10420' => 'spa', 'Sp3g06570' => 'spa', 'Sp4g10660' => 'spa', 'Sp5g16460' => 'spa', 'Sp6g22710' => 'spa', 'TAR365G0112' => 'tar', 'TAR369G0717' => 'tar', 'TAR374G0976' => 'tar', 'TAR623G1128' => 'tar', 'TAR626G1937' => 'tar', 'TAR627G0123' => 'tar', 'TAR628G0305' => 'tar', 'TAR636G1176' => 'tar', 'TAR636G2442' => 'tar', 'THA.LOC104800556' => 'tha', 'THA.LOC104809501' => 'tha', 'THA.LOC104815126' => 'tha', 'THA.LOC104815732' => 'tha', 'THA.LOC104823528' => 'tha', 'Thecc.02G365600' => 'tca', 'Thecc.06G222300' => 'tca', 'Thecc.09G261800' => 'tca', 'Thecc.09G291400' => 'tca', 'Thhalv10003028m.g' => 'esa', 'Thhalv10007886m.g' => 'esa', 'Thhalv10016085m.g' => 'esa', 'Thhalv10016681m.g' => 'esa', 'Thhalv10020951m.g' => 'esa', 'TPR.G15598' => 'tpr', 'TPR.G29305' => 'tpr', 'TPR.G32395' => 'tpr', 'TPR.G36998' => 'tpr', 'TPR.G4227' => 'tpr', 'TWI18G1433' => 'twi', 'TWI31G0755' => 'twi', 'TWI38G0912' => 'twi', 'TWI75G1097' => 'twi', 'TWI75G1619' => 'twi', 'TWI79G1336' => 'twi', 'unitig_0.g943' => 'ugi', 'unitig_0.g944' => 'ugi', 'unitig_22.g6646' => 'ugi', 'unitig_37.g12681' => 'ugi', 'unitig_8.g3290' => 'ugi', 'vmacro03278' => 'vma', 'vmacro12197' => 'vma', 'vmacro14478' => 'vma', 'vmacro15787' => 'vma', 'vmacro15789' => 'vma', 'vmacro15790' => 'vma', 'vmacro15806' => 'vma', 'vmacro22907' => 'vma', 'vmacro22908' => 'vma', 'vmacro22909' => 'vma', 'vmacro23108' => 'vma', 'VMungo0540G0540' => 'vmu', 'VMungo0540G2468' => 'vmu', 'VMungo1080G0390' => 'vmu', 'VMungo1080G1165' => 'vmu', 'VMungo1127G0170' => 'vmu', 'VMungo1127G2099' => 'vmu', 'VMungo1215G3013' => 'vmu', 'Zm00001eb013110' => 'zma', 'Zm00001eb084260' => 'zma', 'Zm00001eb096110' => 'zma', 'Zm00001eb217510' => 'zma', 'Zm00001eb322550' => 'zma', 'Zm00001eb390770' => 'zma', 'Zm00001eb397170' => 'zma', 'Zm00001eb404610' => 'zma', 'Zm00001eb421790' => 'zma' ) $gf_id = 'HOM05D000911' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000911' ) $data_identifier = 'HOM05D000911' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 16, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 5, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 6, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 8, 'nnu' => (int) 16, 'oeu' => (int) 8, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 5, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 16, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421790' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000911', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27780' => 'bna', 'A03p35380' => 'bna', 'A04p21160' => 'bna', 'A05p40570' => 'bna', 'A06p26900' => 'bna', 'A08p33230' => 'bna', 'A09p65960' => 'bna', 'A10p18290' => 'bna', 'Aa31LG1G12990' => 'aar', 'Aa31LG1G2980' => 'aar', 'Aa31LG4G14320' => 'aar', 'Aa31LG7G11800' => 'aar', 'Aa31sc36G50' => 'aar', 'Aa31sc36G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3721' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5459' => 'aag', 'Actinidia03028' => 'ach', 'Actinidia03753' => 'ach', 'Actinidia04187' => 'ach', 'Actinidia05509' => 'ach', 'Actinidia24180' => 'ach', 'Actinidia26906' => 'ach', 'Actinidia37097' => 'ach', 'Actinidia38249' => 'ach', 'Ah.01g003470' => 'amhyb', 'Ah.01g004580' => 'amhyb', 'Ah.01g014850' => 'amhyb', 'Ah.01g016830' => 'amhyb', 'Ah.14g088000' => 'amhyb', 'AL1G22980' => 'aly', 'AL3G18990' => 'aly', 'AL4G22440' => 'aly', 'AL4G33180' => 'aly', 'AL5G22920' => 'aly', 'AL6G33660' => 'aly', 'AL8G20720' => 'aly', 'Aqoxy1G00935' => 'aox', 'Aqoxy1G02094' => 'aox', 'Aqoxy2G01239' => 'aox', 'Aqoxy4G01870' => 'aox', 'Aqoxy7G00450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.36ZVTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71EM27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5D6C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH3WRE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3NCM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RIM768' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YB5YRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z36GDV' => 'arhy', 'AT1G08250' => 'ath', 'AT1G11790' => 'ath', 'AT2G27820' => 'ath', 'AT3G07630' => 'ath', 'AT3G44720' => 'ath', 'AT5G22630' => 'ath', 'ATR0693G304' => 'atr', 'ATR0794G109' => 'atr', 'ATR0820G120' => 'atr', 'ATR1159G064' => 'atr', 'Atru.chr10.2239' => 'acertr', 'Atru.chr3.3371' => 'acertr', 'Atru.chr6.3202' => 'acertr', 'AUR62006499' => 'cqu', 'AUR62012718' => 'cqu', 'AUR62021938' => 'cqu', 'AUR62023932' => 'cqu', 'AUR62025034' => 'cqu', 'AUR62025035' => 'cqu', 'AUR62038307' => 'cqu', 'AUR62043466' => 'cqu', 'BcaB02g10748' => 'bca', 'BcaB03g13231' => 'bca', 'BcaB03g14689' => 'bca', 'BcaB05g22716' => 'bca', 'BcaB06g28172' => 'bca', 'BcaB08g36413' => 'bca', 'BcaC01g02186' => 'bca', 'BcaC01g04272' => 'bca', 'BcaC02g08080' => 'bca', 'BcaC02g08227' => 'bca', 'BcaC03g13901' => 'bca', 'BcaC04g19593' => 'bca', 'BcaC04g20874' => 'bca', 'BcaC05g29557' => 'bca', 'BcaC06g35505' => 'bca', 'BcaC07g41954' => 'bca', 'BcaC07g41955' => 'bca', 'BcaC07g41956' => 'bca', 'BcaC07g42519' => 'bca', 'BcaC07g42520' => 'bca', 'BcaC07g42523' => 'bca', 'BcaC07g42524' => 'bca', 'BcaC07g42525' => 'bca', 'BcaC08g47480' => 'bca', 'BcaC08g47481' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00530' => 'bna', 'BolC2t07178H' => 'bol', 'BolC3t16567H' => 'bol', 'BolC4t27234H' => 'bol', 'BolC5t29728H' => 'bol', 'BolC5t34622H' => 'bol', 'BolC6t40321H' => 'bol', 'BolC7t42028H' => 'bol', 'BolC8t49125H' => 'bol', 'BolC8t52538H' => 'bol', 'BolC8t52539H' => 'bol', 'BolC9t56681H' => 'bol', 'BolC9t58266H' => 'bol', 'BolSC21t60294H' => 'bol', 'BraA02t05670Z' => 'bra', 'BraA03t12716Z' => 'bra', 'BraA04t17685Z' => 'bra', 'BraA05t22788Z' => 'bra', 'BraA06t24032Z' => 'bra', 'BraA06t25625Z' => 'bra', 'BraA07t27930Z' => 'bra', 'BraA08t35242Z' => 'bra', 'BraA09t38609Z' => 'bra', 'BraA10t43905Z' => 'bra', 'C02p11060' => 'bna', 'C03p42990' => 'bna', 'C03p67310' => 'bna', 'C04p56990' => 'bna', 'C04p58660' => 'bna', 'C05p09890' => 'bna', 'C05p59680' => 'bna', 'C06p19830' => 'bna', 'C06p53040' => 'bna', 'C07p15230' => 'bna', 'C08p50070' => 'bna', 'C08p50090' => 'bna', 'C09p38330' => 'bna', 'C09p53940' => 'bna', 'CAN.G1014.1' => 'can', 'CAN.G644.30' => 'can', 'CAN.G84.47' => 'can', 'CAN.G919.8' => 'can', 'CANSAT54G0113' => 'cansat', 'CANSAT54G1286' => 'cansat', 'CANSAT64G1020' => 'cansat', 'CARHR008080' => 'chi', 'CARHR008090' => 'chi', 'CARHR012130' => 'chi', 'CARHR038390' => 'chi', 'CARHR082330' => 'chi', 'CARHR120520' => 'chi', 'CARHR151470' => 'chi', 'CARHR190950' => 'chi', 'Carub.0001s0760' => 'cru', 'Carub.0001s1146' => 'cru', 'Carub.0003s0721' => 'cru', 'Carub.0004s0858' => 'cru', 'Carub.0005s1040' => 'cru', 'Carub.0006s2035' => 'cru', 'Carub.0015s0005' => 'cru', 'Ca_01607_v3' => 'car', 'Ca_01677_v3' => 'car', 'Ca_06087_v3' => 'car', 'Ca_19238_v3' => 'car', 'Ca_19373_v3' => 'car', 'Ca_21079_v3' => 'car', 'CBR_g54016' => 'cbr', 'CBR_g54018' => 'cbr', 'CBR_g54020' => 'cbr', 'Cc01_g09780' => 'ccan', 'Cc01_g11680' => 'ccan', 'Cc02_g15610' => 'ccan', 'Cc05_g04350' => 'ccan', 'Cc09_g01580' => 'ccan', 'CDE01G0795' => 'cde', 'CDE02G2024' => 'cde', 'CDE02G2260' => 'cde', 'CDE02G4561' => 'cde', 'CDE05G2733' => 'cde', 'CDE05G3422' => 'cde', 'CDE06G2003' => 'cde', 'CDE08G0576' => 'cde', 'CDE09G0048' => 'cde', 'CDE11G0805' => 'cde', 'Cfa003644' => 'cfa', 'Cfa006290' => 'cfa', 'Cfa010080' => 'cfa', 'Cfa011376' => 'cfa', 'Cfa011576' => 'cfa', 'Cfa011577' => 'cfa', 'Cfa014389' => 'cfa', 'Ciclev10006044m.g' => 'ccl', 'Ciclev10006954m.g' => 'ccl', 'Ciclev10015131m.g' => 'ccl', 'Ciclev10015580m.g' => 'ccl', 'Ciclev10028359m.g' => 'ccl', 'Ciclev10028573m.g' => 'ccl', 'CiPaw.03G159300' => 'cil', 'CiPaw.04G115100' => 'cil', 'CiPaw.09G092800' => 'cil', 'CiPaw.10G071800' => 'cil', 'CiPaw.13G105800' => 'cil', 'CiPaw.13G141000' => 'cil', 'CiPaw.14G103400' => 'cil', 'ClCG01G012700' => 'cla', 'ClCG01G012720' => 'cla', 'ClCG01G021920' => 'cla', 'ClCG02G008870' => 'cla', 'ClCG02G020840' => 'cla', 'ClCG02G021930' => 'cla', 'COL.COLO4_19302' => 'col', 'COL.COLO4_25262' => 'col', 'COL.COLO4_31788' => 'col', 'Cpa.g.c34684' => 'cpa', 'Cpa.g.c36520.1' => 'cpa', 'Cpa.g.c45626' => 'cpa', 'Cpa.g.sc121.17' => 'cpa', 'Cpa.g.sc13.22' => 'cpa', 'Cpa.g.sc87.88' => 'cpa', 'Cre06.g261800' => 'cre', 'CsaV3_1G014500' => 'csa', 'CsaV3_1G014510' => 'csa', 'CsaV3_2G034880' => 'csa', 'CsaV3_6G014760' => 'csa', 'CsaV3_6G021500' => 'csa', 'CsaV3_6G048980' => 'csa', 'CSS0002511' => 'camsi', 'CSS0007556' => 'camsi', 'CSS0008532' => 'camsi', 'CSS0009709' => 'camsi', 'CSS0010486' => 'camsi', 'CSS0016768' => 'camsi', 'CSS0023512' => 'camsi', 'CSS0025341' => 'camsi', 'CSS0027999' => 'camsi', 'CSS0028944' => 'camsi', 'CSS0032292' => 'camsi', 'CSS0032464' => 'camsi', 'CSS0037153' => 'camsi', 'CSS0039256' => 'camsi', 'CSS0048392' => 'camsi', 'CSS0050458' => 'camsi', 'DCAR_004224' => 'dca', 'DCAR_006147' => 'dca', 'DCAR_006465' => 'dca', 'DCAR_008159' => 'dca', 'DCAR_012164' => 'dca', 'DCAR_019764' => 'dca', 'Dinv05418' => 'din', 'Dinv10839' => 'din', 'Dinv12521' => 'din', 'Dinv13900' => 'din', 'Dinv29426' => 'din', 'Duzib150G0263' => 'dzi', 'Duzib168G1178' => 'dzi', 'Duzib168G1924' => 'dzi', 'Duzib170G0299' => 'dzi', 'Duzib170G0813' => 'dzi', 'Duzib235G1128' => 'dzi', 'Duzib248G1060' => 'dzi', 'ECA232G1910' => 'eca', 'ECA233G4621' => 'eca', 'ECA238G1216' => 'eca', 'ECA238G1784' => 'eca', 'ECA248G1242' => 'eca', 'EL10Ac8g20071' => 'bvu', 'EL10Ac9g21086' => 'bvu', 'EL10Ac9g22407' => 'bvu', 'EL10Ac9g22412' => 'bvu', 'Eucgr.A01119' => 'egr', 'Eucgr.E04043' => 'egr', 'Eucgr.J00428' => 'egr', 'Eucgr.J00958' => 'egr', 'FAN11G3091' => 'fan', 'FAN11G3651' => 'fan', 'FAN16G2566' => 'fan', 'FAN21G3155' => 'fan', 'FAN21G3400' => 'fan', 'FAN21G3543' => 'fan', 'FAN25G0234' => 'fan', 'FAN25G1422' => 'fan', 'FAN25G3392' => 'fan', 'FvH4_3g01940' => 'fve', 'FvH4_3g29870' => 'fve', 'FvH4_3g33680' => 'fve', 'Glyma.09G004200' => 'gma', 'Glyma.11G151288' => 'gma', 'Glyma.11G189100' => 'gma', 'Glyma.12G072500' => 'gma', 'Glyma.12G085500' => 'gma', 'Glyma.12G181800' => 'gma', 'Glyma.12G193000' => 'gma', 'Glyma.13G309300' => 'gma', 'Glyma.13G319000' => 'gma', 'Glyma.17G012600' => 'gma', 'Gohir.A06G148600' => 'ghi', 'Gohir.A07G115800' => 'ghi', 'Gohir.A08G003600' => 'ghi', 'Gohir.A09G093300' => 'ghi', 'Gohir.A09G105400' => 'ghi', 'Gohir.A09G105500' => 'ghi', 'Gohir.D06G154600' => 'ghi', 'Gohir.D07G120200' => 'ghi', 'Gohir.D08G013900' => 'ghi', 'Gohir.D09G093100' => 'ghi', 'Gohir.D09G102200' => 'ghi', 'Gohir.D09G102300' => 'ghi', 'Gorai.001G129400' => 'gra', 'Gorai.004G008200' => 'gra', 'Gorai.006G109800' => 'gra', 'Gorai.006G119500' => 'gra', 'Gorai.006G121300' => 'gra', 'Gorai.010G180700' => 'gra', 'GSVIVG01012716001' => 'vvi', 'GSVIVG01025118001' => 'vvi', 'GSVIVG01030439001' => 'vvi', 'GSVIVG01031397001' => 'vvi', 'HanXRQChr01g0004201' => 'han', 'HanXRQChr02g0054941' => 'han', 'HanXRQChr05g0141811' => 'han', 'HanXRQChr07g0197751' => 'han', 'HanXRQChr11g0346691' => 'han', 'HanXRQChr13g0396971' => 'han', 'HanXRQChr14g0432951' => 'han', 'HanXRQChr14g0452001' => 'han', 'HanXRQChr15g0496681' => 'han', 'HanXRQChr17g0557491' => 'han', 'HanXRQChr17g0557501' => 'han', 'Haze_06809' => 'cav', 'Haze_12852' => 'cav', 'Haze_15850' => 'cav', 'Haze_23446' => 'cav', 'Haze_23942' => 'cav', 'Haze_23943' => 'cav', 'Hma1.2p1_0091F.1_g046450' => 'hma', 'Hma1.2p1_0128F.1_g059910' => 'hma', 'Hma1.2p1_0249F.1_g102260' => 'hma', 'Hma1.2p1_0453F.1_g156190' => 'hma', 'Hma1.2p1_0695F.1_g204380' => 'hma', 'Hma1.2p1_0749F.1_g212650' => 'hma', 'Hma1.2p1_2156F.1_g315420' => 'hma', 'Hma1.2p1_2686F.1_g326940' => 'hma', 'HPP92_006428' => 'vpl', 'HPP92_012069' => 'vpl', 'HPP92_014129' => 'vpl', 'HPP92_014133' => 'vpl', 'HPP92_017315' => 'vpl', 'HPP92_026445' => 'vpl', 'HPP92_026446' => 'vpl', 'Hund00774' => 'sun', 'Hund07682' => 'sun', 'Hund21413' => 'sun', 'Hund23462' => 'sun', 'Hund23463' => 'sun', 'Lalb_Chr03g0027911' => 'lal', 'Lalb_Chr13g0304271' => 'lal', 'Lalb_Chr19g0137471' => 'lal', 'Lalb_Chr22g0350651' => 'lal', 'Lalb_Chr24g0395151' => 'lal', 'Lj1A1231T40' => 'lonja', 'Lj1A221T48' => 'lonja', 'Lj1C924T12' => 'lonja', 'Lj2C993G6' => 'lonja', 'Lj3g0005790' => 'lja', 'Lj3g0015432' => 'lja', 'Lj3g0017722' => 'lja', 'Lj3g0018497' => 'lja', 'Lj4g0025071' => 'lja', 'Lsat_1_v5_gn_1_129680' => 'lsa', 'Lsat_1_v5_gn_2_25321' => 'lsa', 'Lsat_1_v5_gn_2_95461' => 'lsa', 'Lsat_1_v5_gn_4_159620' => 'lsa', 'Lsat_1_v5_gn_6_41301' => 'lsa', 'Lsat_1_v5_gn_6_74660' => 'lsa', 'Lsat_1_v5_gn_7_11520' => 'lsa', 'Lsat_1_v5_gn_9_67680' => 'lsa', 'Manes.04G008300' => 'mes', 'Manes.04G008400' => 'mes', 'Manes.04G026500' => 'mes', 'Manes.10G135300' => 'mes', 'Manes.11G157300' => 'mes', 'Manes.12G074000' => 'mes', 'Manes.16G006200' => 'mes', 'Manes.17G026400' => 'mes', 'Mapoly0024s0086' => 'mpo', 'Mapoly0024s0087' => 'mpo', 'Mapoly0071s0057' => 'mpo', 'Mapoly0204s0012' => 'mpo', 'MBI04_g37681_MAGBIO' => 'mbi', 'MBI05_g17779_MAGBIO' => 'mbi', 'MBI12_g31184_MAGBIO' => 'mbi', 'MBI17_g11083_MAGBIO' => 'mbi', 'MBI18_g03883_MAGBIO' => 'mbi', 'MBI18_g28940_MAGBIO' => 'mbi', 'MCO01G690' => 'mco', 'MD03G1109900' => 'mdo', 'MD03G1134800' => 'mdo', 'MD05G1348000' => 'mdo', 'MD10G1322400' => 'mdo', 'MD11G1123300' => 'mdo', 'MD11G1157600' => 'mdo', 'Medtr2g084875' => 'mtr', 'Medtr2g088130' => 'mtr', 'Medtr4g055310' => 'mtr', 'Medtr4g061070' => 'mtr', 'Medtr4g132250' => 'mtr', 'MELO3C004795.2' => 'cme', 'MELO3C004797.2' => 'cme', 'MELO3C007396.2' => 'cme', 'MELO3C019277.2' => 'cme', 'MELO3C021449.2' => 'cme', 'MELO3C025736.2' => 'cme', 'Migut.D02175' => 'egut', 'Migut.H01573' => 'egut', 'Migut.M01327' => 'egut', 'Migut.N02513' => 'egut', 'MSTRG.14638' => 'ama', 'MSTRG.18632' => 'ama', 'MSTRG.7203' => 'ama', 'Nitab4.5_0000533g0140' => 'nta', 'Nitab4.5_0000888g0150' => 'nta', 'Nitab4.5_0001453g0040' => 'nta', 'Nitab4.5_0002827g0090' => 'nta', 'Nitab4.5_0003082g0040' => 'nta', 'Nitab4.5_0007799g0040' => 'nta', 'Nitab4.5_0008983g0010' => 'nta', 'Nitab4.5_0009017g0020' => 'nta', 'Nn1g02132' => 'nnu', 'Nn1g03492' => 'nnu', 'Nn1g03493' => 'nnu', 'Nn1g03494' => 'nnu', 'Nn1g07164' => 'nnu', 'Nn1g07291' => 'nnu', 'Nn2g10655' => 'nnu', 'Nn2g11652' => 'nnu', 'Nn2g14008' => 'nnu', 'Nn3g17476' => 'nnu', 'Nn3g17477' => 'nnu', 'Nn4g22370' => 'nnu', 'Nn4g25255' => 'nnu', 'Nn5g27755' => 'nnu', 'Nn6g34260' => 'nnu', 'Nn6g35041' => 'nnu', 'Oeu005924.1' => 'oeu', 'Oeu008383.1' => 'oeu', 'Oeu014928.1' => 'oeu', 'Oeu019889.1' => 'oeu', 'Oeu022271.1' => 'oeu', 'Oeu025271.1' => 'oeu', 'Oeu036302.1' => 'oeu', 'Oeu044100.1' => 'oeu', 'Os01g0528300' => 'osa', 'Os03g0286200' => 'osa', 'Os04g0406600' => 'osa', 'Os07g0512000' => 'osa', 'Os07g0694600' => 'osa', 'Os08g0411000' => 'osa', 'Os09g0565700' => 'osa', 'Os09g0566050' => 'osa', 'Os10g0523700' => 'osa', 'Peaxi162Scf00002g00514' => 'pax', 'Peaxi162Scf00047g01817' => 'pax', 'Peaxi162Scf00114g00001' => 'pax', 'Peaxi162Scf00147g00613' => 'pax', 'Peaxi162Scf00389g00425' => 'pax', 'PGR042G1139' => 'pgr', 'PGR042G3273' => 'pgr', 'PGR102G2180' => 'pgr', 'PGR119G0234' => 'pgr', 'PGR119G0668' => 'pgr', 'PGSC0003DMG400007122' => 'stu', 'PGSC0003DMG400016478' => 'stu', 'PGSC0003DMG400025374' => 'stu', 'PGSC0003DMG400026536' => 'stu', 'Phvul.003G079600' => 'pvu', 'Phvul.005G115600' => 'pvu', 'Phvul.005G127100' => 'pvu', 'Phvul.006G149500' => 'pvu', 'Phvul.006G149600' => 'pvu', 'Phvul.011G071800' => 'pvu', 'Phvul.011G090400' => 'pvu', 'Potri.004G013400' => 'ptr', 'Potri.004G188100' => 'ptr', 'Potri.008G195500' => 'ptr', 'Potri.009G148800' => 'ptr', 'Potri.011G004700' => 'ptr', 'Pp3c17_22810' => 'ppa', 'Pp3c18_4480' => 'ppa', 'Pp3c19_13030' => 'ppa', 'Pp3c1_33620' => 'ppa', 'Pp3c2_9380' => 'ppa', 'PRCOL_00001023' => 'pco', 'Prupe.3G216300' => 'ppe', 'Prupe.4G019500' => 'ppe', 'Prupe.6G092500' => 'ppe', 'Prupe.6G119200' => 'ppe', 'Psat0s1945g0080' => 'psa', 'Psat0s4167g0040' => 'psa', 'Psat1g185800' => 'psa', 'Psat4g006440' => 'psa', 'Psat4g006480' => 'psa', 'Psat4g168120' => 'psa', 'Psat5g255680' => 'psa', 'Psat5g261760' => 'psa', 'Psat7g222120' => 'psa', 'PSO063G7252' => 'pso', 'PSO170G4778' => 'pso', 'PSO210G2249' => 'pso', 'PSO339G2411' => 'pso', 'PSO339G2457' => 'pso', 'PSO339G2854' => 'pso', 'PSO339G4288' => 'pso', 'PSO339G4615' => 'pso', 'PSO384G2796' => 'pso', 'PSO384G2940' => 'pso', 'PSO384G4227' => 'pso', 'PSO478G1425' => 'pso', 'PSO541G3863' => 'pso', 'PSO675G0507' => 'pso', 'PSO782G0338' => 'pso', 'PSO832G0644' => 'pso', 'QL01p013664' => 'qlo', 'QL01p036598' => 'qlo', 'QL05p072984' => 'qlo', 'QL08p005768' => 'qlo', 'QL08p032743' => 'qlo', 'QL93p0073_0439' => 'qlo', 'QL93p0073_0444' => 'qlo', 'RcHm_v2.0_Chr5g0002851' => 'rch', 'RcHm_v2.0_Chr5g0055201' => 'rch', 'RcHm_v2.0_Chr5g0061191' => 'rch', 'RcHm_v2.0_Chr7g0203231' => 'rch', 'Rhsim01G0208100' => 'rsi', 'Rhsim01G0208200' => 'rsi', 'Rhsim02G0106500' => 'rsi', 'Rhsim03G0107900' => 'rsi', 'Rhsim06G0163400' => 'rsi', 'Rhsim13G0105200' => 'rsi', 'Sabra04G0006300' => 'sbr', 'Sabra04G0127000' => 'sbr', 'Sabra08G0148700' => 'sbr', 'Sabra09G0117400' => 'sbr', 'SalBow1G3326' => 'sbo', 'SalBow3G3228' => 'sbo', 'SalBow6G1634' => 'sbo', 'SalBow6G3603' => 'sbo', 'SalBow6G5266' => 'sbo', 'SalBow7G2265' => 'sbo', 'SalBow8G0850' => 'sbo', 'SalBow8G2592' => 'sbo', 'Sc05g0009240' => 'sci', 'Sc12g0002300' => 'sci', 'Sc21g0000100' => 'sci', 'Sc21g0004720' => 'sci', 'Sed0002949' => 'sed', 'Sed0004114' => 'sed', 'Sed0004306' => 'sed', 'Sed0006172' => 'sed', 'Sed0008413' => 'sed', 'Sed0013809' => 'sed', 'Sed0019556' => 'sed', 'SEGI_03570' => 'sgi', 'SEGI_07859' => 'sgi', 'SEGI_15042' => 'sgi', 'SEGI_16263' => 'sgi', 'SEGI_16552' => 'sgi', 'SEGI_24331' => 'sgi', 'SEGI_27316' => 'sgi', 'SEGI_29521' => 'sgi', 'SEGI_41342' => 'sgi', 'SGA_v2.0_scaffold27G11617' => 'sas', 'SGA_v2.0_scaffold316G48428' => 'sas', 'SGA_v2.0_scaffold49G18261' => 'sas', 'SGA_v2.0_scaffold7G03831' => 'sas', 'SGA_v2.0_scaffold93G28359' => 'sas', 'SHI02210' => 'shi', 'SHI06028' => 'shi', 'SHI06321' => 'shi', 'SMO111G0012' => 'smo', 'SMO228G0080' => 'smo', 'SMO356G0756' => 'smo', 'Solyc02g080620.3' => 'sly', 'Solyc06g074530.1' => 'sly', 'Solyc11g066890.1' => 'sly', 'Solyc11g072520.3' => 'sly', 'Sopen02g025330' => 'spe', 'Sopen06g031000' => 'spe', 'Sopen09g008240' => 'spe', 'Sopen09g025210' => 'spe', 'Sopen11g026600' => 'spe', 'Sopen11g030170' => 'spe', 'Sp1g10420' => 'spa', 'Sp3g06570' => 'spa', 'Sp4g10660' => 'spa', 'Sp5g16460' => 'spa', 'Sp6g22710' => 'spa', 'TAR365G0112' => 'tar', 'TAR369G0717' => 'tar', 'TAR374G0976' => 'tar', 'TAR623G1128' => 'tar', 'TAR626G1937' => 'tar', 'TAR627G0123' => 'tar', 'TAR628G0305' => 'tar', 'TAR636G1176' => 'tar', 'TAR636G2442' => 'tar', 'THA.LOC104800556' => 'tha', 'THA.LOC104809501' => 'tha', 'THA.LOC104815126' => 'tha', 'THA.LOC104815732' => 'tha', 'THA.LOC104823528' => 'tha', 'Thecc.02G365600' => 'tca', 'Thecc.06G222300' => 'tca', 'Thecc.09G261800' => 'tca', 'Thecc.09G291400' => 'tca', 'Thhalv10003028m.g' => 'esa', 'Thhalv10007886m.g' => 'esa', 'Thhalv10016085m.g' => 'esa', 'Thhalv10016681m.g' => 'esa', 'Thhalv10020951m.g' => 'esa', 'TPR.G15598' => 'tpr', 'TPR.G29305' => 'tpr', 'TPR.G32395' => 'tpr', 'TPR.G36998' => 'tpr', 'TPR.G4227' => 'tpr', 'TWI18G1433' => 'twi', 'TWI31G0755' => 'twi', 'TWI38G0912' => 'twi', 'TWI75G1097' => 'twi', 'TWI75G1619' => 'twi', 'TWI79G1336' => 'twi', 'unitig_0.g943' => 'ugi', 'unitig_0.g944' => 'ugi', 'unitig_22.g6646' => 'ugi', 'unitig_37.g12681' => 'ugi', 'unitig_8.g3290' => 'ugi', 'vmacro03278' => 'vma', 'vmacro12197' => 'vma', 'vmacro14478' => 'vma', 'vmacro15787' => 'vma', 'vmacro15789' => 'vma', 'vmacro15790' => 'vma', 'vmacro15806' => 'vma', 'vmacro22907' => 'vma', 'vmacro22908' => 'vma', 'vmacro22909' => 'vma', 'vmacro23108' => 'vma', 'VMungo0540G0540' => 'vmu', 'VMungo0540G2468' => 'vmu', 'VMungo1080G0390' => 'vmu', 'VMungo1080G1165' => 'vmu', 'VMungo1127G0170' => 'vmu', 'VMungo1127G2099' => 'vmu', 'VMungo1215G3013' => 'vmu', 'Zm00001eb013110' => 'zma', 'Zm00001eb084260' => 'zma', 'Zm00001eb096110' => 'zma', 'Zm00001eb217510' => 'zma', 'Zm00001eb322550' => 'zma', 'Zm00001eb390770' => 'zma', 'Zm00001eb397170' => 'zma', 'Zm00001eb404610' => 'zma', 'Zm00001eb421790' => 'zma' ), 'gf_id' => 'HOM05D000911', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000911' ), 'data_identifier' => 'HOM05D000911', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000911', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27780' => 'bna', 'A03p35380' => 'bna', 'A04p21160' => 'bna', 'A05p40570' => 'bna', 'A06p26900' => 'bna', 'A08p33230' => 'bna', 'A09p65960' => 'bna', 'A10p18290' => 'bna', 'Aa31LG1G12990' => 'aar', 'Aa31LG1G2980' => 'aar', 'Aa31LG4G14320' => 'aar', 'Aa31LG7G11800' => 'aar', 'Aa31sc36G50' => 'aar', 'Aa31sc36G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3721' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5459' => 'aag', 'Actinidia03028' => 'ach', 'Actinidia03753' => 'ach', 'Actinidia04187' => 'ach', 'Actinidia05509' => 'ach', 'Actinidia24180' => 'ach', 'Actinidia26906' => 'ach', 'Actinidia37097' => 'ach', 'Actinidia38249' => 'ach', 'Ah.01g003470' => 'amhyb', 'Ah.01g004580' => 'amhyb', 'Ah.01g014850' => 'amhyb', 'Ah.01g016830' => 'amhyb', 'Ah.14g088000' => 'amhyb', 'AL1G22980' => 'aly', 'AL3G18990' => 'aly', 'AL4G22440' => 'aly', 'AL4G33180' => 'aly', 'AL5G22920' => 'aly', 'AL6G33660' => 'aly', 'AL8G20720' => 'aly', 'Aqoxy1G00935' => 'aox', 'Aqoxy1G02094' => 'aox', 'Aqoxy2G01239' => 'aox', 'Aqoxy4G01870' => 'aox', 'Aqoxy7G00450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.36ZVTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71EM27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5D6C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH3WRE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3NCM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RIM768' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YB5YRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z36GDV' => 'arhy', 'AT1G08250' => 'ath', 'AT1G11790' => 'ath', 'AT2G27820' => 'ath', 'AT3G07630' => 'ath', 'AT3G44720' => 'ath', 'AT5G22630' => 'ath', 'ATR0693G304' => 'atr', 'ATR0794G109' => 'atr', 'ATR0820G120' => 'atr', 'ATR1159G064' => 'atr', 'Atru.chr10.2239' => 'acertr', 'Atru.chr3.3371' => 'acertr', 'Atru.chr6.3202' => 'acertr', 'AUR62006499' => 'cqu', 'AUR62012718' => 'cqu', 'AUR62021938' => 'cqu', 'AUR62023932' => 'cqu', 'AUR62025034' => 'cqu', 'AUR62025035' => 'cqu', 'AUR62038307' => 'cqu', 'AUR62043466' => 'cqu', 'BcaB02g10748' => 'bca', 'BcaB03g13231' => 'bca', 'BcaB03g14689' => 'bca', 'BcaB05g22716' => 'bca', 'BcaB06g28172' => 'bca', 'BcaB08g36413' => 'bca', 'BcaC01g02186' => 'bca', 'BcaC01g04272' => 'bca', 'BcaC02g08080' => 'bca', 'BcaC02g08227' => 'bca', 'BcaC03g13901' => 'bca', 'BcaC04g19593' => 'bca', 'BcaC04g20874' => 'bca', 'BcaC05g29557' => 'bca', 'BcaC06g35505' => 'bca', 'BcaC07g41954' => 'bca', 'BcaC07g41955' => 'bca', 'BcaC07g41956' => 'bca', 'BcaC07g42519' => 'bca', 'BcaC07g42520' => 'bca', 'BcaC07g42523' => 'bca', 'BcaC07g42524' => 'bca', 'BcaC07g42525' => 'bca', 'BcaC08g47480' => 'bca', 'BcaC08g47481' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00530' => 'bna', 'BolC2t07178H' => 'bol', 'BolC3t16567H' => 'bol', 'BolC4t27234H' => 'bol', 'BolC5t29728H' => 'bol', 'BolC5t34622H' => 'bol', 'BolC6t40321H' => 'bol', 'BolC7t42028H' => 'bol', 'BolC8t49125H' => 'bol', 'BolC8t52538H' => 'bol', 'BolC8t52539H' => 'bol', 'BolC9t56681H' => 'bol', 'BolC9t58266H' => 'bol', 'BolSC21t60294H' => 'bol', 'BraA02t05670Z' => 'bra', 'BraA03t12716Z' => 'bra', 'BraA04t17685Z' => 'bra', 'BraA05t22788Z' => 'bra', 'BraA06t24032Z' => 'bra', 'BraA06t25625Z' => 'bra', 'BraA07t27930Z' => 'bra', 'BraA08t35242Z' => 'bra', 'BraA09t38609Z' => 'bra', 'BraA10t43905Z' => 'bra', 'C02p11060' => 'bna', 'C03p42990' => 'bna', 'C03p67310' => 'bna', 'C04p56990' => 'bna', 'C04p58660' => 'bna', 'C05p09890' => 'bna', 'C05p59680' => 'bna', 'C06p19830' => 'bna', 'C06p53040' => 'bna', 'C07p15230' => 'bna', 'C08p50070' => 'bna', 'C08p50090' => 'bna', 'C09p38330' => 'bna', 'C09p53940' => 'bna', 'CAN.G1014.1' => 'can', 'CAN.G644.30' => 'can', 'CAN.G84.47' => 'can', 'CAN.G919.8' => 'can', 'CANSAT54G0113' => 'cansat', 'CANSAT54G1286' => 'cansat', 'CANSAT64G1020' => 'cansat', 'CARHR008080' => 'chi', 'CARHR008090' => 'chi', 'CARHR012130' => 'chi', 'CARHR038390' => 'chi', 'CARHR082330' => 'chi', 'CARHR120520' => 'chi', 'CARHR151470' => 'chi', 'CARHR190950' => 'chi', 'Carub.0001s0760' => 'cru', 'Carub.0001s1146' => 'cru', 'Carub.0003s0721' => 'cru', 'Carub.0004s0858' => 'cru', 'Carub.0005s1040' => 'cru', 'Carub.0006s2035' => 'cru', 'Carub.0015s0005' => 'cru', 'Ca_01607_v3' => 'car', 'Ca_01677_v3' => 'car', 'Ca_06087_v3' => 'car', 'Ca_19238_v3' => 'car', 'Ca_19373_v3' => 'car', 'Ca_21079_v3' => 'car', 'CBR_g54016' => 'cbr', 'CBR_g54018' => 'cbr', 'CBR_g54020' => 'cbr', 'Cc01_g09780' => 'ccan', 'Cc01_g11680' => 'ccan', 'Cc02_g15610' => 'ccan', 'Cc05_g04350' => 'ccan', 'Cc09_g01580' => 'ccan', 'CDE01G0795' => 'cde', 'CDE02G2024' => 'cde', 'CDE02G2260' => 'cde', 'CDE02G4561' => 'cde', 'CDE05G2733' => 'cde', 'CDE05G3422' => 'cde', 'CDE06G2003' => 'cde', 'CDE08G0576' => 'cde', 'CDE09G0048' => 'cde', 'CDE11G0805' => 'cde', 'Cfa003644' => 'cfa', 'Cfa006290' => 'cfa', 'Cfa010080' => 'cfa', 'Cfa011376' => 'cfa', 'Cfa011576' => 'cfa', 'Cfa011577' => 'cfa', 'Cfa014389' => 'cfa', 'Ciclev10006044m.g' => 'ccl', 'Ciclev10006954m.g' => 'ccl', 'Ciclev10015131m.g' => 'ccl', 'Ciclev10015580m.g' => 'ccl', 'Ciclev10028359m.g' => 'ccl', 'Ciclev10028573m.g' => 'ccl', 'CiPaw.03G159300' => 'cil', 'CiPaw.04G115100' => 'cil', 'CiPaw.09G092800' => 'cil', 'CiPaw.10G071800' => 'cil', 'CiPaw.13G105800' => 'cil', 'CiPaw.13G141000' => 'cil', 'CiPaw.14G103400' => 'cil', 'ClCG01G012700' => 'cla', 'ClCG01G012720' => 'cla', 'ClCG01G021920' => 'cla', 'ClCG02G008870' => 'cla', 'ClCG02G020840' => 'cla', 'ClCG02G021930' => 'cla', 'COL.COLO4_19302' => 'col', 'COL.COLO4_25262' => 'col', 'COL.COLO4_31788' => 'col', 'Cpa.g.c34684' => 'cpa', 'Cpa.g.c36520.1' => 'cpa', 'Cpa.g.c45626' => 'cpa', 'Cpa.g.sc121.17' => 'cpa', 'Cpa.g.sc13.22' => 'cpa', 'Cpa.g.sc87.88' => 'cpa', 'Cre06.g261800' => 'cre', 'CsaV3_1G014500' => 'csa', 'CsaV3_1G014510' => 'csa', 'CsaV3_2G034880' => 'csa', 'CsaV3_6G014760' => 'csa', 'CsaV3_6G021500' => 'csa', 'CsaV3_6G048980' => 'csa', 'CSS0002511' => 'camsi', 'CSS0007556' => 'camsi', 'CSS0008532' => 'camsi', 'CSS0009709' => 'camsi', 'CSS0010486' => 'camsi', 'CSS0016768' => 'camsi', 'CSS0023512' => 'camsi', 'CSS0025341' => 'camsi', 'CSS0027999' => 'camsi', 'CSS0028944' => 'camsi', 'CSS0032292' => 'camsi', 'CSS0032464' => 'camsi', 'CSS0037153' => 'camsi', 'CSS0039256' => 'camsi', 'CSS0048392' => 'camsi', 'CSS0050458' => 'camsi', 'DCAR_004224' => 'dca', 'DCAR_006147' => 'dca', 'DCAR_006465' => 'dca', 'DCAR_008159' => 'dca', 'DCAR_012164' => 'dca', 'DCAR_019764' => 'dca', 'Dinv05418' => 'din', 'Dinv10839' => 'din', 'Dinv12521' => 'din', 'Dinv13900' => 'din', 'Dinv29426' => 'din', 'Duzib150G0263' => 'dzi', 'Duzib168G1178' => 'dzi', 'Duzib168G1924' => 'dzi', 'Duzib170G0299' => 'dzi', 'Duzib170G0813' => 'dzi', 'Duzib235G1128' => 'dzi', 'Duzib248G1060' => 'dzi', 'ECA232G1910' => 'eca', 'ECA233G4621' => 'eca', 'ECA238G1216' => 'eca', 'ECA238G1784' => 'eca', 'ECA248G1242' => 'eca', 'EL10Ac8g20071' => 'bvu', 'EL10Ac9g21086' => 'bvu', 'EL10Ac9g22407' => 'bvu', 'EL10Ac9g22412' => 'bvu', 'Eucgr.A01119' => 'egr', 'Eucgr.E04043' => 'egr', 'Eucgr.J00428' => 'egr', 'Eucgr.J00958' => 'egr', 'FAN11G3091' => 'fan', 'FAN11G3651' => 'fan', 'FAN16G2566' => 'fan', 'FAN21G3155' => 'fan', 'FAN21G3400' => 'fan', 'FAN21G3543' => 'fan', 'FAN25G0234' => 'fan', 'FAN25G1422' => 'fan', 'FAN25G3392' => 'fan', 'FvH4_3g01940' => 'fve', 'FvH4_3g29870' => 'fve', 'FvH4_3g33680' => 'fve', 'Glyma.09G004200' => 'gma', 'Glyma.11G151288' => 'gma', 'Glyma.11G189100' => 'gma', 'Glyma.12G072500' => 'gma', 'Glyma.12G085500' => 'gma', 'Glyma.12G181800' => 'gma', 'Glyma.12G193000' => 'gma', 'Glyma.13G309300' => 'gma', 'Glyma.13G319000' => 'gma', 'Glyma.17G012600' => 'gma', 'Gohir.A06G148600' => 'ghi', 'Gohir.A07G115800' => 'ghi', 'Gohir.A08G003600' => 'ghi', 'Gohir.A09G093300' => 'ghi', 'Gohir.A09G105400' => 'ghi', 'Gohir.A09G105500' => 'ghi', 'Gohir.D06G154600' => 'ghi', 'Gohir.D07G120200' => 'ghi', 'Gohir.D08G013900' => 'ghi', 'Gohir.D09G093100' => 'ghi', 'Gohir.D09G102200' => 'ghi', 'Gohir.D09G102300' => 'ghi', 'Gorai.001G129400' => 'gra', 'Gorai.004G008200' => 'gra', 'Gorai.006G109800' => 'gra', 'Gorai.006G119500' => 'gra', 'Gorai.006G121300' => 'gra', 'Gorai.010G180700' => 'gra', 'GSVIVG01012716001' => 'vvi', 'GSVIVG01025118001' => 'vvi', 'GSVIVG01030439001' => 'vvi', 'GSVIVG01031397001' => 'vvi', 'HanXRQChr01g0004201' => 'han', 'HanXRQChr02g0054941' => 'han', 'HanXRQChr05g0141811' => 'han', 'HanXRQChr07g0197751' => 'han', 'HanXRQChr11g0346691' => 'han', 'HanXRQChr13g0396971' => 'han', 'HanXRQChr14g0432951' => 'han', 'HanXRQChr14g0452001' => 'han', 'HanXRQChr15g0496681' => 'han', 'HanXRQChr17g0557491' => 'han', 'HanXRQChr17g0557501' => 'han', 'Haze_06809' => 'cav', 'Haze_12852' => 'cav', 'Haze_15850' => 'cav', 'Haze_23446' => 'cav', 'Haze_23942' => 'cav', 'Haze_23943' => 'cav', 'Hma1.2p1_0091F.1_g046450' => 'hma', 'Hma1.2p1_0128F.1_g059910' => 'hma', 'Hma1.2p1_0249F.1_g102260' => 'hma', 'Hma1.2p1_0453F.1_g156190' => 'hma', 'Hma1.2p1_0695F.1_g204380' => 'hma', 'Hma1.2p1_0749F.1_g212650' => 'hma', 'Hma1.2p1_2156F.1_g315420' => 'hma', 'Hma1.2p1_2686F.1_g326940' => 'hma', 'HPP92_006428' => 'vpl', 'HPP92_012069' => 'vpl', 'HPP92_014129' => 'vpl', 'HPP92_014133' => 'vpl', 'HPP92_017315' => 'vpl', 'HPP92_026445' => 'vpl', 'HPP92_026446' => 'vpl', 'Hund00774' => 'sun', 'Hund07682' => 'sun', 'Hund21413' => 'sun', 'Hund23462' => 'sun', 'Hund23463' => 'sun', 'Lalb_Chr03g0027911' => 'lal', 'Lalb_Chr13g0304271' => 'lal', 'Lalb_Chr19g0137471' => 'lal', 'Lalb_Chr22g0350651' => 'lal', 'Lalb_Chr24g0395151' => 'lal', 'Lj1A1231T40' => 'lonja', 'Lj1A221T48' => 'lonja', 'Lj1C924T12' => 'lonja', 'Lj2C993G6' => 'lonja', 'Lj3g0005790' => 'lja', 'Lj3g0015432' => 'lja', 'Lj3g0017722' => 'lja', 'Lj3g0018497' => 'lja', 'Lj4g0025071' => 'lja', 'Lsat_1_v5_gn_1_129680' => 'lsa', 'Lsat_1_v5_gn_2_25321' => 'lsa', 'Lsat_1_v5_gn_2_95461' => 'lsa', 'Lsat_1_v5_gn_4_159620' => 'lsa', 'Lsat_1_v5_gn_6_41301' => 'lsa', 'Lsat_1_v5_gn_6_74660' => 'lsa', 'Lsat_1_v5_gn_7_11520' => 'lsa', 'Lsat_1_v5_gn_9_67680' => 'lsa', 'Manes.04G008300' => 'mes', 'Manes.04G008400' => 'mes', 'Manes.04G026500' => 'mes', 'Manes.10G135300' => 'mes', 'Manes.11G157300' => 'mes', 'Manes.12G074000' => 'mes', 'Manes.16G006200' => 'mes', 'Manes.17G026400' => 'mes', 'Mapoly0024s0086' => 'mpo', 'Mapoly0024s0087' => 'mpo', 'Mapoly0071s0057' => 'mpo', 'Mapoly0204s0012' => 'mpo', 'MBI04_g37681_MAGBIO' => 'mbi', 'MBI05_g17779_MAGBIO' => 'mbi', 'MBI12_g31184_MAGBIO' => 'mbi', 'MBI17_g11083_MAGBIO' => 'mbi', 'MBI18_g03883_MAGBIO' => 'mbi', 'MBI18_g28940_MAGBIO' => 'mbi', 'MCO01G690' => 'mco', 'MD03G1109900' => 'mdo', 'MD03G1134800' => 'mdo', 'MD05G1348000' => 'mdo', 'MD10G1322400' => 'mdo', 'MD11G1123300' => 'mdo', 'MD11G1157600' => 'mdo', 'Medtr2g084875' => 'mtr', 'Medtr2g088130' => 'mtr', 'Medtr4g055310' => 'mtr', 'Medtr4g061070' => 'mtr', 'Medtr4g132250' => 'mtr', 'MELO3C004795.2' => 'cme', 'MELO3C004797.2' => 'cme', 'MELO3C007396.2' => 'cme', 'MELO3C019277.2' => 'cme', 'MELO3C021449.2' => 'cme', 'MELO3C025736.2' => 'cme', 'Migut.D02175' => 'egut', 'Migut.H01573' => 'egut', 'Migut.M01327' => 'egut', 'Migut.N02513' => 'egut', 'MSTRG.14638' => 'ama', 'MSTRG.18632' => 'ama', 'MSTRG.7203' => 'ama', 'Nitab4.5_0000533g0140' => 'nta', 'Nitab4.5_0000888g0150' => 'nta', 'Nitab4.5_0001453g0040' => 'nta', 'Nitab4.5_0002827g0090' => 'nta', 'Nitab4.5_0003082g0040' => 'nta', 'Nitab4.5_0007799g0040' => 'nta', 'Nitab4.5_0008983g0010' => 'nta', 'Nitab4.5_0009017g0020' => 'nta', 'Nn1g02132' => 'nnu', 'Nn1g03492' => 'nnu', 'Nn1g03493' => 'nnu', 'Nn1g03494' => 'nnu', 'Nn1g07164' => 'nnu', 'Nn1g07291' => 'nnu', 'Nn2g10655' => 'nnu', 'Nn2g11652' => 'nnu', 'Nn2g14008' => 'nnu', 'Nn3g17476' => 'nnu', 'Nn3g17477' => 'nnu', 'Nn4g22370' => 'nnu', 'Nn4g25255' => 'nnu', 'Nn5g27755' => 'nnu', 'Nn6g34260' => 'nnu', 'Nn6g35041' => 'nnu', 'Oeu005924.1' => 'oeu', 'Oeu008383.1' => 'oeu', 'Oeu014928.1' => 'oeu', 'Oeu019889.1' => 'oeu', 'Oeu022271.1' => 'oeu', 'Oeu025271.1' => 'oeu', 'Oeu036302.1' => 'oeu', 'Oeu044100.1' => 'oeu', 'Os01g0528300' => 'osa', 'Os03g0286200' => 'osa', 'Os04g0406600' => 'osa', 'Os07g0512000' => 'osa', 'Os07g0694600' => 'osa', 'Os08g0411000' => 'osa', 'Os09g0565700' => 'osa', 'Os09g0566050' => 'osa', 'Os10g0523700' => 'osa', 'Peaxi162Scf00002g00514' => 'pax', 'Peaxi162Scf00047g01817' => 'pax', 'Peaxi162Scf00114g00001' => 'pax', 'Peaxi162Scf00147g00613' => 'pax', 'Peaxi162Scf00389g00425' => 'pax', 'PGR042G1139' => 'pgr', 'PGR042G3273' => 'pgr', 'PGR102G2180' => 'pgr', 'PGR119G0234' => 'pgr', 'PGR119G0668' => 'pgr', 'PGSC0003DMG400007122' => 'stu', 'PGSC0003DMG400016478' => 'stu', 'PGSC0003DMG400025374' => 'stu', 'PGSC0003DMG400026536' => 'stu', 'Phvul.003G079600' => 'pvu', 'Phvul.005G115600' => 'pvu', 'Phvul.005G127100' => 'pvu', 'Phvul.006G149500' => 'pvu', 'Phvul.006G149600' => 'pvu', 'Phvul.011G071800' => 'pvu', 'Phvul.011G090400' => 'pvu', 'Potri.004G013400' => 'ptr', 'Potri.004G188100' => 'ptr', 'Potri.008G195500' => 'ptr', 'Potri.009G148800' => 'ptr', 'Potri.011G004700' => 'ptr', 'Pp3c17_22810' => 'ppa', 'Pp3c18_4480' => 'ppa', 'Pp3c19_13030' => 'ppa', 'Pp3c1_33620' => 'ppa', 'Pp3c2_9380' => 'ppa', 'PRCOL_00001023' => 'pco', 'Prupe.3G216300' => 'ppe', 'Prupe.4G019500' => 'ppe', 'Prupe.6G092500' => 'ppe', 'Prupe.6G119200' => 'ppe', 'Psat0s1945g0080' => 'psa', 'Psat0s4167g0040' => 'psa', 'Psat1g185800' => 'psa', 'Psat4g006440' => 'psa', 'Psat4g006480' => 'psa', 'Psat4g168120' => 'psa', 'Psat5g255680' => 'psa', 'Psat5g261760' => 'psa', 'Psat7g222120' => 'psa', 'PSO063G7252' => 'pso', 'PSO170G4778' => 'pso', 'PSO210G2249' => 'pso', 'PSO339G2411' => 'pso', 'PSO339G2457' => 'pso', 'PSO339G2854' => 'pso', 'PSO339G4288' => 'pso', 'PSO339G4615' => 'pso', 'PSO384G2796' => 'pso', 'PSO384G2940' => 'pso', 'PSO384G4227' => 'pso', 'PSO478G1425' => 'pso', 'PSO541G3863' => 'pso', 'PSO675G0507' => 'pso', 'PSO782G0338' => 'pso', 'PSO832G0644' => 'pso', 'QL01p013664' => 'qlo', 'QL01p036598' => 'qlo', 'QL05p072984' => 'qlo', 'QL08p005768' => 'qlo', 'QL08p032743' => 'qlo', 'QL93p0073_0439' => 'qlo', 'QL93p0073_0444' => 'qlo', 'RcHm_v2.0_Chr5g0002851' => 'rch', 'RcHm_v2.0_Chr5g0055201' => 'rch', 'RcHm_v2.0_Chr5g0061191' => 'rch', 'RcHm_v2.0_Chr7g0203231' => 'rch', 'Rhsim01G0208100' => 'rsi', 'Rhsim01G0208200' => 'rsi', 'Rhsim02G0106500' => 'rsi', 'Rhsim03G0107900' => 'rsi', 'Rhsim06G0163400' => 'rsi', 'Rhsim13G0105200' => 'rsi', 'Sabra04G0006300' => 'sbr', 'Sabra04G0127000' => 'sbr', 'Sabra08G0148700' => 'sbr', 'Sabra09G0117400' => 'sbr', 'SalBow1G3326' => 'sbo', 'SalBow3G3228' => 'sbo', 'SalBow6G1634' => 'sbo', 'SalBow6G3603' => 'sbo', 'SalBow6G5266' => 'sbo', 'SalBow7G2265' => 'sbo', 'SalBow8G0850' => 'sbo', 'SalBow8G2592' => 'sbo', 'Sc05g0009240' => 'sci', 'Sc12g0002300' => 'sci', 'Sc21g0000100' => 'sci', 'Sc21g0004720' => 'sci', 'Sed0002949' => 'sed', 'Sed0004114' => 'sed', 'Sed0004306' => 'sed', 'Sed0006172' => 'sed', 'Sed0008413' => 'sed', 'Sed0013809' => 'sed', 'Sed0019556' => 'sed', 'SEGI_03570' => 'sgi', 'SEGI_07859' => 'sgi', 'SEGI_15042' => 'sgi', 'SEGI_16263' => 'sgi', 'SEGI_16552' => 'sgi', 'SEGI_24331' => 'sgi', 'SEGI_27316' => 'sgi', 'SEGI_29521' => 'sgi', 'SEGI_41342' => 'sgi', 'SGA_v2.0_scaffold27G11617' => 'sas', 'SGA_v2.0_scaffold316G48428' => 'sas', 'SGA_v2.0_scaffold49G18261' => 'sas', 'SGA_v2.0_scaffold7G03831' => 'sas', 'SGA_v2.0_scaffold93G28359' => 'sas', 'SHI02210' => 'shi', 'SHI06028' => 'shi', 'SHI06321' => 'shi', 'SMO111G0012' => 'smo', 'SMO228G0080' => 'smo', 'SMO356G0756' => 'smo', 'Solyc02g080620.3' => 'sly', 'Solyc06g074530.1' => 'sly', 'Solyc11g066890.1' => 'sly', 'Solyc11g072520.3' => 'sly', 'Sopen02g025330' => 'spe', 'Sopen06g031000' => 'spe', 'Sopen09g008240' => 'spe', 'Sopen09g025210' => 'spe', 'Sopen11g026600' => 'spe', 'Sopen11g030170' => 'spe', 'Sp1g10420' => 'spa', 'Sp3g06570' => 'spa', 'Sp4g10660' => 'spa', 'Sp5g16460' => 'spa', 'Sp6g22710' => 'spa', 'TAR365G0112' => 'tar', 'TAR369G0717' => 'tar', 'TAR374G0976' => 'tar', 'TAR623G1128' => 'tar', 'TAR626G1937' => 'tar', 'TAR627G0123' => 'tar', 'TAR628G0305' => 'tar', 'TAR636G1176' => 'tar', 'TAR636G2442' => 'tar', 'THA.LOC104800556' => 'tha', 'THA.LOC104809501' => 'tha', 'THA.LOC104815126' => 'tha', 'THA.LOC104815732' => 'tha', 'THA.LOC104823528' => 'tha', 'Thecc.02G365600' => 'tca', 'Thecc.06G222300' => 'tca', 'Thecc.09G261800' => 'tca', 'Thecc.09G291400' => 'tca', 'Thhalv10003028m.g' => 'esa', 'Thhalv10007886m.g' => 'esa', 'Thhalv10016085m.g' => 'esa', 'Thhalv10016681m.g' => 'esa', 'Thhalv10020951m.g' => 'esa', 'TPR.G15598' => 'tpr', 'TPR.G29305' => 'tpr', 'TPR.G32395' => 'tpr', 'TPR.G36998' => 'tpr', 'TPR.G4227' => 'tpr', 'TWI18G1433' => 'twi', 'TWI31G0755' => 'twi', 'TWI38G0912' => 'twi', 'TWI75G1097' => 'twi', 'TWI75G1619' => 'twi', 'TWI79G1336' => 'twi', 'unitig_0.g943' => 'ugi', 'unitig_0.g944' => 'ugi', 'unitig_22.g6646' => 'ugi', 'unitig_37.g12681' => 'ugi', 'unitig_8.g3290' => 'ugi', 'vmacro03278' => 'vma', 'vmacro12197' => 'vma', 'vmacro14478' => 'vma', 'vmacro15787' => 'vma', 'vmacro15789' => 'vma', 'vmacro15790' => 'vma', 'vmacro15806' => 'vma', 'vmacro22907' => 'vma', 'vmacro22908' => 'vma', 'vmacro22909' => 'vma', 'vmacro23108' => 'vma', 'VMungo0540G0540' => 'vmu', 'VMungo0540G2468' => 'vmu', 'VMungo1080G0390' => 'vmu', 'VMungo1080G1165' => 'vmu', 'VMungo1127G0170' => 'vmu', 'VMungo1127G2099' => 'vmu', 'VMungo1215G3013' => 'vmu', 'Zm00001eb013110' => 'zma', 'Zm00001eb084260' => 'zma', 'Zm00001eb096110' => 'zma', 'Zm00001eb217510' => 'zma', 'Zm00001eb322550' => 'zma', 'Zm00001eb390770' => 'zma', 'Zm00001eb397170' => 'zma', 'Zm00001eb404610' => 'zma', 'Zm00001eb421790' => 'zma' ) $gf_id = 'HOM05D000911' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000911' ) $data_identifier = 'HOM05D000911' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 16, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 5, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 6, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 8, 'nnu' => (int) 16, 'oeu' => (int) 8, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 5, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 16, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421790' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000911', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27780' => 'bna', 'A03p35380' => 'bna', 'A04p21160' => 'bna', 'A05p40570' => 'bna', 'A06p26900' => 'bna', 'A08p33230' => 'bna', 'A09p65960' => 'bna', 'A10p18290' => 'bna', 'Aa31LG1G12990' => 'aar', 'Aa31LG1G2980' => 'aar', 'Aa31LG4G14320' => 'aar', 'Aa31LG7G11800' => 'aar', 'Aa31sc36G50' => 'aar', 'Aa31sc36G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3721' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5459' => 'aag', 'Actinidia03028' => 'ach', 'Actinidia03753' => 'ach', 'Actinidia04187' => 'ach', 'Actinidia05509' => 'ach', 'Actinidia24180' => 'ach', 'Actinidia26906' => 'ach', 'Actinidia37097' => 'ach', 'Actinidia38249' => 'ach', 'Ah.01g003470' => 'amhyb', 'Ah.01g004580' => 'amhyb', 'Ah.01g014850' => 'amhyb', 'Ah.01g016830' => 'amhyb', 'Ah.14g088000' => 'amhyb', 'AL1G22980' => 'aly', 'AL3G18990' => 'aly', 'AL4G22440' => 'aly', 'AL4G33180' => 'aly', 'AL5G22920' => 'aly', 'AL6G33660' => 'aly', 'AL8G20720' => 'aly', 'Aqoxy1G00935' => 'aox', 'Aqoxy1G02094' => 'aox', 'Aqoxy2G01239' => 'aox', 'Aqoxy4G01870' => 'aox', 'Aqoxy7G00450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.36ZVTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71EM27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5D6C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH3WRE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3NCM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RIM768' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YB5YRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z36GDV' => 'arhy', 'AT1G08250' => 'ath', 'AT1G11790' => 'ath', 'AT2G27820' => 'ath', 'AT3G07630' => 'ath', 'AT3G44720' => 'ath', 'AT5G22630' => 'ath', 'ATR0693G304' => 'atr', 'ATR0794G109' => 'atr', 'ATR0820G120' => 'atr', 'ATR1159G064' => 'atr', 'Atru.chr10.2239' => 'acertr', 'Atru.chr3.3371' => 'acertr', 'Atru.chr6.3202' => 'acertr', 'AUR62006499' => 'cqu', 'AUR62012718' => 'cqu', 'AUR62021938' => 'cqu', 'AUR62023932' => 'cqu', 'AUR62025034' => 'cqu', 'AUR62025035' => 'cqu', 'AUR62038307' => 'cqu', 'AUR62043466' => 'cqu', 'BcaB02g10748' => 'bca', 'BcaB03g13231' => 'bca', 'BcaB03g14689' => 'bca', 'BcaB05g22716' => 'bca', 'BcaB06g28172' => 'bca', 'BcaB08g36413' => 'bca', 'BcaC01g02186' => 'bca', 'BcaC01g04272' => 'bca', 'BcaC02g08080' => 'bca', 'BcaC02g08227' => 'bca', 'BcaC03g13901' => 'bca', 'BcaC04g19593' => 'bca', 'BcaC04g20874' => 'bca', 'BcaC05g29557' => 'bca', 'BcaC06g35505' => 'bca', 'BcaC07g41954' => 'bca', 'BcaC07g41955' => 'bca', 'BcaC07g41956' => 'bca', 'BcaC07g42519' => 'bca', 'BcaC07g42520' => 'bca', 'BcaC07g42523' => 'bca', 'BcaC07g42524' => 'bca', 'BcaC07g42525' => 'bca', 'BcaC08g47480' => 'bca', 'BcaC08g47481' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00530' => 'bna', 'BolC2t07178H' => 'bol', 'BolC3t16567H' => 'bol', 'BolC4t27234H' => 'bol', 'BolC5t29728H' => 'bol', 'BolC5t34622H' => 'bol', 'BolC6t40321H' => 'bol', 'BolC7t42028H' => 'bol', 'BolC8t49125H' => 'bol', 'BolC8t52538H' => 'bol', 'BolC8t52539H' => 'bol', 'BolC9t56681H' => 'bol', 'BolC9t58266H' => 'bol', 'BolSC21t60294H' => 'bol', 'BraA02t05670Z' => 'bra', 'BraA03t12716Z' => 'bra', 'BraA04t17685Z' => 'bra', 'BraA05t22788Z' => 'bra', 'BraA06t24032Z' => 'bra', 'BraA06t25625Z' => 'bra', 'BraA07t27930Z' => 'bra', 'BraA08t35242Z' => 'bra', 'BraA09t38609Z' => 'bra', 'BraA10t43905Z' => 'bra', 'C02p11060' => 'bna', 'C03p42990' => 'bna', 'C03p67310' => 'bna', 'C04p56990' => 'bna', 'C04p58660' => 'bna', 'C05p09890' => 'bna', 'C05p59680' => 'bna', 'C06p19830' => 'bna', 'C06p53040' => 'bna', 'C07p15230' => 'bna', 'C08p50070' => 'bna', 'C08p50090' => 'bna', 'C09p38330' => 'bna', 'C09p53940' => 'bna', 'CAN.G1014.1' => 'can', 'CAN.G644.30' => 'can', 'CAN.G84.47' => 'can', 'CAN.G919.8' => 'can', 'CANSAT54G0113' => 'cansat', 'CANSAT54G1286' => 'cansat', 'CANSAT64G1020' => 'cansat', 'CARHR008080' => 'chi', 'CARHR008090' => 'chi', 'CARHR012130' => 'chi', 'CARHR038390' => 'chi', 'CARHR082330' => 'chi', 'CARHR120520' => 'chi', 'CARHR151470' => 'chi', 'CARHR190950' => 'chi', 'Carub.0001s0760' => 'cru', 'Carub.0001s1146' => 'cru', 'Carub.0003s0721' => 'cru', 'Carub.0004s0858' => 'cru', 'Carub.0005s1040' => 'cru', 'Carub.0006s2035' => 'cru', 'Carub.0015s0005' => 'cru', 'Ca_01607_v3' => 'car', 'Ca_01677_v3' => 'car', 'Ca_06087_v3' => 'car', 'Ca_19238_v3' => 'car', 'Ca_19373_v3' => 'car', 'Ca_21079_v3' => 'car', 'CBR_g54016' => 'cbr', 'CBR_g54018' => 'cbr', 'CBR_g54020' => 'cbr', 'Cc01_g09780' => 'ccan', 'Cc01_g11680' => 'ccan', 'Cc02_g15610' => 'ccan', 'Cc05_g04350' => 'ccan', 'Cc09_g01580' => 'ccan', 'CDE01G0795' => 'cde', 'CDE02G2024' => 'cde', 'CDE02G2260' => 'cde', 'CDE02G4561' => 'cde', 'CDE05G2733' => 'cde', 'CDE05G3422' => 'cde', 'CDE06G2003' => 'cde', 'CDE08G0576' => 'cde', 'CDE09G0048' => 'cde', 'CDE11G0805' => 'cde', 'Cfa003644' => 'cfa', 'Cfa006290' => 'cfa', 'Cfa010080' => 'cfa', 'Cfa011376' => 'cfa', 'Cfa011576' => 'cfa', 'Cfa011577' => 'cfa', 'Cfa014389' => 'cfa', 'Ciclev10006044m.g' => 'ccl', 'Ciclev10006954m.g' => 'ccl', 'Ciclev10015131m.g' => 'ccl', 'Ciclev10015580m.g' => 'ccl', 'Ciclev10028359m.g' => 'ccl', 'Ciclev10028573m.g' => 'ccl', 'CiPaw.03G159300' => 'cil', 'CiPaw.04G115100' => 'cil', 'CiPaw.09G092800' => 'cil', 'CiPaw.10G071800' => 'cil', 'CiPaw.13G105800' => 'cil', 'CiPaw.13G141000' => 'cil', 'CiPaw.14G103400' => 'cil', 'ClCG01G012700' => 'cla', 'ClCG01G012720' => 'cla', 'ClCG01G021920' => 'cla', 'ClCG02G008870' => 'cla', 'ClCG02G020840' => 'cla', 'ClCG02G021930' => 'cla', 'COL.COLO4_19302' => 'col', 'COL.COLO4_25262' => 'col', 'COL.COLO4_31788' => 'col', 'Cpa.g.c34684' => 'cpa', 'Cpa.g.c36520.1' => 'cpa', 'Cpa.g.c45626' => 'cpa', 'Cpa.g.sc121.17' => 'cpa', 'Cpa.g.sc13.22' => 'cpa', 'Cpa.g.sc87.88' => 'cpa', 'Cre06.g261800' => 'cre', 'CsaV3_1G014500' => 'csa', 'CsaV3_1G014510' => 'csa', 'CsaV3_2G034880' => 'csa', 'CsaV3_6G014760' => 'csa', 'CsaV3_6G021500' => 'csa', 'CsaV3_6G048980' => 'csa', 'CSS0002511' => 'camsi', 'CSS0007556' => 'camsi', 'CSS0008532' => 'camsi', 'CSS0009709' => 'camsi', 'CSS0010486' => 'camsi', 'CSS0016768' => 'camsi', 'CSS0023512' => 'camsi', 'CSS0025341' => 'camsi', 'CSS0027999' => 'camsi', 'CSS0028944' => 'camsi', 'CSS0032292' => 'camsi', 'CSS0032464' => 'camsi', 'CSS0037153' => 'camsi', 'CSS0039256' => 'camsi', 'CSS0048392' => 'camsi', 'CSS0050458' => 'camsi', 'DCAR_004224' => 'dca', 'DCAR_006147' => 'dca', 'DCAR_006465' => 'dca', 'DCAR_008159' => 'dca', 'DCAR_012164' => 'dca', 'DCAR_019764' => 'dca', 'Dinv05418' => 'din', 'Dinv10839' => 'din', 'Dinv12521' => 'din', 'Dinv13900' => 'din', 'Dinv29426' => 'din', 'Duzib150G0263' => 'dzi', 'Duzib168G1178' => 'dzi', 'Duzib168G1924' => 'dzi', 'Duzib170G0299' => 'dzi', 'Duzib170G0813' => 'dzi', 'Duzib235G1128' => 'dzi', 'Duzib248G1060' => 'dzi', 'ECA232G1910' => 'eca', 'ECA233G4621' => 'eca', 'ECA238G1216' => 'eca', 'ECA238G1784' => 'eca', 'ECA248G1242' => 'eca', 'EL10Ac8g20071' => 'bvu', 'EL10Ac9g21086' => 'bvu', 'EL10Ac9g22407' => 'bvu', 'EL10Ac9g22412' => 'bvu', 'Eucgr.A01119' => 'egr', 'Eucgr.E04043' => 'egr', 'Eucgr.J00428' => 'egr', 'Eucgr.J00958' => 'egr', 'FAN11G3091' => 'fan', 'FAN11G3651' => 'fan', 'FAN16G2566' => 'fan', 'FAN21G3155' => 'fan', 'FAN21G3400' => 'fan', 'FAN21G3543' => 'fan', 'FAN25G0234' => 'fan', 'FAN25G1422' => 'fan', 'FAN25G3392' => 'fan', 'FvH4_3g01940' => 'fve', 'FvH4_3g29870' => 'fve', 'FvH4_3g33680' => 'fve', 'Glyma.09G004200' => 'gma', 'Glyma.11G151288' => 'gma', 'Glyma.11G189100' => 'gma', 'Glyma.12G072500' => 'gma', 'Glyma.12G085500' => 'gma', 'Glyma.12G181800' => 'gma', 'Glyma.12G193000' => 'gma', 'Glyma.13G309300' => 'gma', 'Glyma.13G319000' => 'gma', 'Glyma.17G012600' => 'gma', 'Gohir.A06G148600' => 'ghi', 'Gohir.A07G115800' => 'ghi', 'Gohir.A08G003600' => 'ghi', 'Gohir.A09G093300' => 'ghi', 'Gohir.A09G105400' => 'ghi', 'Gohir.A09G105500' => 'ghi', 'Gohir.D06G154600' => 'ghi', 'Gohir.D07G120200' => 'ghi', 'Gohir.D08G013900' => 'ghi', 'Gohir.D09G093100' => 'ghi', 'Gohir.D09G102200' => 'ghi', 'Gohir.D09G102300' => 'ghi', 'Gorai.001G129400' => 'gra', 'Gorai.004G008200' => 'gra', 'Gorai.006G109800' => 'gra', 'Gorai.006G119500' => 'gra', 'Gorai.006G121300' => 'gra', 'Gorai.010G180700' => 'gra', 'GSVIVG01012716001' => 'vvi', 'GSVIVG01025118001' => 'vvi', 'GSVIVG01030439001' => 'vvi', 'GSVIVG01031397001' => 'vvi', 'HanXRQChr01g0004201' => 'han', 'HanXRQChr02g0054941' => 'han', 'HanXRQChr05g0141811' => 'han', 'HanXRQChr07g0197751' => 'han', 'HanXRQChr11g0346691' => 'han', 'HanXRQChr13g0396971' => 'han', 'HanXRQChr14g0432951' => 'han', 'HanXRQChr14g0452001' => 'han', 'HanXRQChr15g0496681' => 'han', 'HanXRQChr17g0557491' => 'han', 'HanXRQChr17g0557501' => 'han', 'Haze_06809' => 'cav', 'Haze_12852' => 'cav', 'Haze_15850' => 'cav', 'Haze_23446' => 'cav', 'Haze_23942' => 'cav', 'Haze_23943' => 'cav', 'Hma1.2p1_0091F.1_g046450' => 'hma', 'Hma1.2p1_0128F.1_g059910' => 'hma', 'Hma1.2p1_0249F.1_g102260' => 'hma', 'Hma1.2p1_0453F.1_g156190' => 'hma', 'Hma1.2p1_0695F.1_g204380' => 'hma', 'Hma1.2p1_0749F.1_g212650' => 'hma', 'Hma1.2p1_2156F.1_g315420' => 'hma', 'Hma1.2p1_2686F.1_g326940' => 'hma', 'HPP92_006428' => 'vpl', 'HPP92_012069' => 'vpl', 'HPP92_014129' => 'vpl', 'HPP92_014133' => 'vpl', 'HPP92_017315' => 'vpl', 'HPP92_026445' => 'vpl', 'HPP92_026446' => 'vpl', 'Hund00774' => 'sun', 'Hund07682' => 'sun', 'Hund21413' => 'sun', 'Hund23462' => 'sun', 'Hund23463' => 'sun', 'Lalb_Chr03g0027911' => 'lal', 'Lalb_Chr13g0304271' => 'lal', 'Lalb_Chr19g0137471' => 'lal', 'Lalb_Chr22g0350651' => 'lal', 'Lalb_Chr24g0395151' => 'lal', 'Lj1A1231T40' => 'lonja', 'Lj1A221T48' => 'lonja', 'Lj1C924T12' => 'lonja', 'Lj2C993G6' => 'lonja', 'Lj3g0005790' => 'lja', 'Lj3g0015432' => 'lja', 'Lj3g0017722' => 'lja', 'Lj3g0018497' => 'lja', 'Lj4g0025071' => 'lja', 'Lsat_1_v5_gn_1_129680' => 'lsa', 'Lsat_1_v5_gn_2_25321' => 'lsa', 'Lsat_1_v5_gn_2_95461' => 'lsa', 'Lsat_1_v5_gn_4_159620' => 'lsa', 'Lsat_1_v5_gn_6_41301' => 'lsa', 'Lsat_1_v5_gn_6_74660' => 'lsa', 'Lsat_1_v5_gn_7_11520' => 'lsa', 'Lsat_1_v5_gn_9_67680' => 'lsa', 'Manes.04G008300' => 'mes', 'Manes.04G008400' => 'mes', 'Manes.04G026500' => 'mes', 'Manes.10G135300' => 'mes', 'Manes.11G157300' => 'mes', 'Manes.12G074000' => 'mes', 'Manes.16G006200' => 'mes', 'Manes.17G026400' => 'mes', 'Mapoly0024s0086' => 'mpo', 'Mapoly0024s0087' => 'mpo', 'Mapoly0071s0057' => 'mpo', 'Mapoly0204s0012' => 'mpo', 'MBI04_g37681_MAGBIO' => 'mbi', 'MBI05_g17779_MAGBIO' => 'mbi', 'MBI12_g31184_MAGBIO' => 'mbi', 'MBI17_g11083_MAGBIO' => 'mbi', 'MBI18_g03883_MAGBIO' => 'mbi', 'MBI18_g28940_MAGBIO' => 'mbi', 'MCO01G690' => 'mco', 'MD03G1109900' => 'mdo', 'MD03G1134800' => 'mdo', 'MD05G1348000' => 'mdo', 'MD10G1322400' => 'mdo', 'MD11G1123300' => 'mdo', 'MD11G1157600' => 'mdo', 'Medtr2g084875' => 'mtr', 'Medtr2g088130' => 'mtr', 'Medtr4g055310' => 'mtr', 'Medtr4g061070' => 'mtr', 'Medtr4g132250' => 'mtr', 'MELO3C004795.2' => 'cme', 'MELO3C004797.2' => 'cme', 'MELO3C007396.2' => 'cme', 'MELO3C019277.2' => 'cme', 'MELO3C021449.2' => 'cme', 'MELO3C025736.2' => 'cme', 'Migut.D02175' => 'egut', 'Migut.H01573' => 'egut', 'Migut.M01327' => 'egut', 'Migut.N02513' => 'egut', 'MSTRG.14638' => 'ama', 'MSTRG.18632' => 'ama', 'MSTRG.7203' => 'ama', 'Nitab4.5_0000533g0140' => 'nta', 'Nitab4.5_0000888g0150' => 'nta', 'Nitab4.5_0001453g0040' => 'nta', 'Nitab4.5_0002827g0090' => 'nta', 'Nitab4.5_0003082g0040' => 'nta', 'Nitab4.5_0007799g0040' => 'nta', 'Nitab4.5_0008983g0010' => 'nta', 'Nitab4.5_0009017g0020' => 'nta', 'Nn1g02132' => 'nnu', 'Nn1g03492' => 'nnu', 'Nn1g03493' => 'nnu', 'Nn1g03494' => 'nnu', 'Nn1g07164' => 'nnu', 'Nn1g07291' => 'nnu', 'Nn2g10655' => 'nnu', 'Nn2g11652' => 'nnu', 'Nn2g14008' => 'nnu', 'Nn3g17476' => 'nnu', 'Nn3g17477' => 'nnu', 'Nn4g22370' => 'nnu', 'Nn4g25255' => 'nnu', 'Nn5g27755' => 'nnu', 'Nn6g34260' => 'nnu', 'Nn6g35041' => 'nnu', 'Oeu005924.1' => 'oeu', 'Oeu008383.1' => 'oeu', 'Oeu014928.1' => 'oeu', 'Oeu019889.1' => 'oeu', 'Oeu022271.1' => 'oeu', 'Oeu025271.1' => 'oeu', 'Oeu036302.1' => 'oeu', 'Oeu044100.1' => 'oeu', 'Os01g0528300' => 'osa', 'Os03g0286200' => 'osa', 'Os04g0406600' => 'osa', 'Os07g0512000' => 'osa', 'Os07g0694600' => 'osa', 'Os08g0411000' => 'osa', 'Os09g0565700' => 'osa', 'Os09g0566050' => 'osa', 'Os10g0523700' => 'osa', 'Peaxi162Scf00002g00514' => 'pax', 'Peaxi162Scf00047g01817' => 'pax', 'Peaxi162Scf00114g00001' => 'pax', 'Peaxi162Scf00147g00613' => 'pax', 'Peaxi162Scf00389g00425' => 'pax', 'PGR042G1139' => 'pgr', 'PGR042G3273' => 'pgr', 'PGR102G2180' => 'pgr', 'PGR119G0234' => 'pgr', 'PGR119G0668' => 'pgr', 'PGSC0003DMG400007122' => 'stu', 'PGSC0003DMG400016478' => 'stu', 'PGSC0003DMG400025374' => 'stu', 'PGSC0003DMG400026536' => 'stu', 'Phvul.003G079600' => 'pvu', 'Phvul.005G115600' => 'pvu', 'Phvul.005G127100' => 'pvu', 'Phvul.006G149500' => 'pvu', 'Phvul.006G149600' => 'pvu', 'Phvul.011G071800' => 'pvu', 'Phvul.011G090400' => 'pvu', 'Potri.004G013400' => 'ptr', 'Potri.004G188100' => 'ptr', 'Potri.008G195500' => 'ptr', 'Potri.009G148800' => 'ptr', 'Potri.011G004700' => 'ptr', 'Pp3c17_22810' => 'ppa', 'Pp3c18_4480' => 'ppa', 'Pp3c19_13030' => 'ppa', 'Pp3c1_33620' => 'ppa', 'Pp3c2_9380' => 'ppa', 'PRCOL_00001023' => 'pco', 'Prupe.3G216300' => 'ppe', 'Prupe.4G019500' => 'ppe', 'Prupe.6G092500' => 'ppe', 'Prupe.6G119200' => 'ppe', 'Psat0s1945g0080' => 'psa', 'Psat0s4167g0040' => 'psa', 'Psat1g185800' => 'psa', 'Psat4g006440' => 'psa', 'Psat4g006480' => 'psa', 'Psat4g168120' => 'psa', 'Psat5g255680' => 'psa', 'Psat5g261760' => 'psa', 'Psat7g222120' => 'psa', 'PSO063G7252' => 'pso', 'PSO170G4778' => 'pso', 'PSO210G2249' => 'pso', 'PSO339G2411' => 'pso', 'PSO339G2457' => 'pso', 'PSO339G2854' => 'pso', 'PSO339G4288' => 'pso', 'PSO339G4615' => 'pso', 'PSO384G2796' => 'pso', 'PSO384G2940' => 'pso', 'PSO384G4227' => 'pso', 'PSO478G1425' => 'pso', 'PSO541G3863' => 'pso', 'PSO675G0507' => 'pso', 'PSO782G0338' => 'pso', 'PSO832G0644' => 'pso', 'QL01p013664' => 'qlo', 'QL01p036598' => 'qlo', 'QL05p072984' => 'qlo', 'QL08p005768' => 'qlo', 'QL08p032743' => 'qlo', 'QL93p0073_0439' => 'qlo', 'QL93p0073_0444' => 'qlo', 'RcHm_v2.0_Chr5g0002851' => 'rch', 'RcHm_v2.0_Chr5g0055201' => 'rch', 'RcHm_v2.0_Chr5g0061191' => 'rch', 'RcHm_v2.0_Chr7g0203231' => 'rch', 'Rhsim01G0208100' => 'rsi', 'Rhsim01G0208200' => 'rsi', 'Rhsim02G0106500' => 'rsi', 'Rhsim03G0107900' => 'rsi', 'Rhsim06G0163400' => 'rsi', 'Rhsim13G0105200' => 'rsi', 'Sabra04G0006300' => 'sbr', 'Sabra04G0127000' => 'sbr', 'Sabra08G0148700' => 'sbr', 'Sabra09G0117400' => 'sbr', 'SalBow1G3326' => 'sbo', 'SalBow3G3228' => 'sbo', 'SalBow6G1634' => 'sbo', 'SalBow6G3603' => 'sbo', 'SalBow6G5266' => 'sbo', 'SalBow7G2265' => 'sbo', 'SalBow8G0850' => 'sbo', 'SalBow8G2592' => 'sbo', 'Sc05g0009240' => 'sci', 'Sc12g0002300' => 'sci', 'Sc21g0000100' => 'sci', 'Sc21g0004720' => 'sci', 'Sed0002949' => 'sed', 'Sed0004114' => 'sed', 'Sed0004306' => 'sed', 'Sed0006172' => 'sed', 'Sed0008413' => 'sed', 'Sed0013809' => 'sed', 'Sed0019556' => 'sed', 'SEGI_03570' => 'sgi', 'SEGI_07859' => 'sgi', 'SEGI_15042' => 'sgi', 'SEGI_16263' => 'sgi', 'SEGI_16552' => 'sgi', 'SEGI_24331' => 'sgi', 'SEGI_27316' => 'sgi', 'SEGI_29521' => 'sgi', 'SEGI_41342' => 'sgi', 'SGA_v2.0_scaffold27G11617' => 'sas', 'SGA_v2.0_scaffold316G48428' => 'sas', 'SGA_v2.0_scaffold49G18261' => 'sas', 'SGA_v2.0_scaffold7G03831' => 'sas', 'SGA_v2.0_scaffold93G28359' => 'sas', 'SHI02210' => 'shi', 'SHI06028' => 'shi', 'SHI06321' => 'shi', 'SMO111G0012' => 'smo', 'SMO228G0080' => 'smo', 'SMO356G0756' => 'smo', 'Solyc02g080620.3' => 'sly', 'Solyc06g074530.1' => 'sly', 'Solyc11g066890.1' => 'sly', 'Solyc11g072520.3' => 'sly', 'Sopen02g025330' => 'spe', 'Sopen06g031000' => 'spe', 'Sopen09g008240' => 'spe', 'Sopen09g025210' => 'spe', 'Sopen11g026600' => 'spe', 'Sopen11g030170' => 'spe', 'Sp1g10420' => 'spa', 'Sp3g06570' => 'spa', 'Sp4g10660' => 'spa', 'Sp5g16460' => 'spa', 'Sp6g22710' => 'spa', 'TAR365G0112' => 'tar', 'TAR369G0717' => 'tar', 'TAR374G0976' => 'tar', 'TAR623G1128' => 'tar', 'TAR626G1937' => 'tar', 'TAR627G0123' => 'tar', 'TAR628G0305' => 'tar', 'TAR636G1176' => 'tar', 'TAR636G2442' => 'tar', 'THA.LOC104800556' => 'tha', 'THA.LOC104809501' => 'tha', 'THA.LOC104815126' => 'tha', 'THA.LOC104815732' => 'tha', 'THA.LOC104823528' => 'tha', 'Thecc.02G365600' => 'tca', 'Thecc.06G222300' => 'tca', 'Thecc.09G261800' => 'tca', 'Thecc.09G291400' => 'tca', 'Thhalv10003028m.g' => 'esa', 'Thhalv10007886m.g' => 'esa', 'Thhalv10016085m.g' => 'esa', 'Thhalv10016681m.g' => 'esa', 'Thhalv10020951m.g' => 'esa', 'TPR.G15598' => 'tpr', 'TPR.G29305' => 'tpr', 'TPR.G32395' => 'tpr', 'TPR.G36998' => 'tpr', 'TPR.G4227' => 'tpr', 'TWI18G1433' => 'twi', 'TWI31G0755' => 'twi', 'TWI38G0912' => 'twi', 'TWI75G1097' => 'twi', 'TWI75G1619' => 'twi', 'TWI79G1336' => 'twi', 'unitig_0.g943' => 'ugi', 'unitig_0.g944' => 'ugi', 'unitig_22.g6646' => 'ugi', 'unitig_37.g12681' => 'ugi', 'unitig_8.g3290' => 'ugi', 'vmacro03278' => 'vma', 'vmacro12197' => 'vma', 'vmacro14478' => 'vma', 'vmacro15787' => 'vma', 'vmacro15789' => 'vma', 'vmacro15790' => 'vma', 'vmacro15806' => 'vma', 'vmacro22907' => 'vma', 'vmacro22908' => 'vma', 'vmacro22909' => 'vma', 'vmacro23108' => 'vma', 'VMungo0540G0540' => 'vmu', 'VMungo0540G2468' => 'vmu', 'VMungo1080G0390' => 'vmu', 'VMungo1080G1165' => 'vmu', 'VMungo1127G0170' => 'vmu', 'VMungo1127G2099' => 'vmu', 'VMungo1215G3013' => 'vmu', 'Zm00001eb013110' => 'zma', 'Zm00001eb084260' => 'zma', 'Zm00001eb096110' => 'zma', 'Zm00001eb217510' => 'zma', 'Zm00001eb322550' => 'zma', 'Zm00001eb390770' => 'zma', 'Zm00001eb397170' => 'zma', 'Zm00001eb404610' => 'zma', 'Zm00001eb421790' => 'zma' ), 'gf_id' => 'HOM05D000911', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000911' ), 'data_identifier' => 'HOM05D000911', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000911', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27780' => 'bna', 'A03p35380' => 'bna', 'A04p21160' => 'bna', 'A05p40570' => 'bna', 'A06p26900' => 'bna', 'A08p33230' => 'bna', 'A09p65960' => 'bna', 'A10p18290' => 'bna', 'Aa31LG1G12990' => 'aar', 'Aa31LG1G2980' => 'aar', 'Aa31LG4G14320' => 'aar', 'Aa31LG7G11800' => 'aar', 'Aa31sc36G50' => 'aar', 'Aa31sc36G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3721' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5459' => 'aag', 'Actinidia03028' => 'ach', 'Actinidia03753' => 'ach', 'Actinidia04187' => 'ach', 'Actinidia05509' => 'ach', 'Actinidia24180' => 'ach', 'Actinidia26906' => 'ach', 'Actinidia37097' => 'ach', 'Actinidia38249' => 'ach', 'Ah.01g003470' => 'amhyb', 'Ah.01g004580' => 'amhyb', 'Ah.01g014850' => 'amhyb', 'Ah.01g016830' => 'amhyb', 'Ah.14g088000' => 'amhyb', 'AL1G22980' => 'aly', 'AL3G18990' => 'aly', 'AL4G22440' => 'aly', 'AL4G33180' => 'aly', 'AL5G22920' => 'aly', 'AL6G33660' => 'aly', 'AL8G20720' => 'aly', 'Aqoxy1G00935' => 'aox', 'Aqoxy1G02094' => 'aox', 'Aqoxy2G01239' => 'aox', 'Aqoxy4G01870' => 'aox', 'Aqoxy7G00450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.36ZVTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71EM27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5D6C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH3WRE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3NCM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RIM768' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YB5YRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z36GDV' => 'arhy', 'AT1G08250' => 'ath', 'AT1G11790' => 'ath', 'AT2G27820' => 'ath', 'AT3G07630' => 'ath', 'AT3G44720' => 'ath', 'AT5G22630' => 'ath', 'ATR0693G304' => 'atr', 'ATR0794G109' => 'atr', 'ATR0820G120' => 'atr', 'ATR1159G064' => 'atr', 'Atru.chr10.2239' => 'acertr', 'Atru.chr3.3371' => 'acertr', 'Atru.chr6.3202' => 'acertr', 'AUR62006499' => 'cqu', 'AUR62012718' => 'cqu', 'AUR62021938' => 'cqu', 'AUR62023932' => 'cqu', 'AUR62025034' => 'cqu', 'AUR62025035' => 'cqu', 'AUR62038307' => 'cqu', 'AUR62043466' => 'cqu', 'BcaB02g10748' => 'bca', 'BcaB03g13231' => 'bca', 'BcaB03g14689' => 'bca', 'BcaB05g22716' => 'bca', 'BcaB06g28172' => 'bca', 'BcaB08g36413' => 'bca', 'BcaC01g02186' => 'bca', 'BcaC01g04272' => 'bca', 'BcaC02g08080' => 'bca', 'BcaC02g08227' => 'bca', 'BcaC03g13901' => 'bca', 'BcaC04g19593' => 'bca', 'BcaC04g20874' => 'bca', 'BcaC05g29557' => 'bca', 'BcaC06g35505' => 'bca', 'BcaC07g41954' => 'bca', 'BcaC07g41955' => 'bca', 'BcaC07g41956' => 'bca', 'BcaC07g42519' => 'bca', 'BcaC07g42520' => 'bca', 'BcaC07g42523' => 'bca', 'BcaC07g42524' => 'bca', 'BcaC07g42525' => 'bca', 'BcaC08g47480' => 'bca', 'BcaC08g47481' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00530' => 'bna', 'BolC2t07178H' => 'bol', 'BolC3t16567H' => 'bol', 'BolC4t27234H' => 'bol', 'BolC5t29728H' => 'bol', 'BolC5t34622H' => 'bol', 'BolC6t40321H' => 'bol', 'BolC7t42028H' => 'bol', 'BolC8t49125H' => 'bol', 'BolC8t52538H' => 'bol', 'BolC8t52539H' => 'bol', 'BolC9t56681H' => 'bol', 'BolC9t58266H' => 'bol', 'BolSC21t60294H' => 'bol', 'BraA02t05670Z' => 'bra', 'BraA03t12716Z' => 'bra', 'BraA04t17685Z' => 'bra', 'BraA05t22788Z' => 'bra', 'BraA06t24032Z' => 'bra', 'BraA06t25625Z' => 'bra', 'BraA07t27930Z' => 'bra', 'BraA08t35242Z' => 'bra', 'BraA09t38609Z' => 'bra', 'BraA10t43905Z' => 'bra', 'C02p11060' => 'bna', 'C03p42990' => 'bna', 'C03p67310' => 'bna', 'C04p56990' => 'bna', 'C04p58660' => 'bna', 'C05p09890' => 'bna', 'C05p59680' => 'bna', 'C06p19830' => 'bna', 'C06p53040' => 'bna', 'C07p15230' => 'bna', 'C08p50070' => 'bna', 'C08p50090' => 'bna', 'C09p38330' => 'bna', 'C09p53940' => 'bna', 'CAN.G1014.1' => 'can', 'CAN.G644.30' => 'can', 'CAN.G84.47' => 'can', 'CAN.G919.8' => 'can', 'CANSAT54G0113' => 'cansat', 'CANSAT54G1286' => 'cansat', 'CANSAT64G1020' => 'cansat', 'CARHR008080' => 'chi', 'CARHR008090' => 'chi', 'CARHR012130' => 'chi', 'CARHR038390' => 'chi', 'CARHR082330' => 'chi', 'CARHR120520' => 'chi', 'CARHR151470' => 'chi', 'CARHR190950' => 'chi', 'Carub.0001s0760' => 'cru', 'Carub.0001s1146' => 'cru', 'Carub.0003s0721' => 'cru', 'Carub.0004s0858' => 'cru', 'Carub.0005s1040' => 'cru', 'Carub.0006s2035' => 'cru', 'Carub.0015s0005' => 'cru', 'Ca_01607_v3' => 'car', 'Ca_01677_v3' => 'car', 'Ca_06087_v3' => 'car', 'Ca_19238_v3' => 'car', 'Ca_19373_v3' => 'car', 'Ca_21079_v3' => 'car', 'CBR_g54016' => 'cbr', 'CBR_g54018' => 'cbr', 'CBR_g54020' => 'cbr', 'Cc01_g09780' => 'ccan', 'Cc01_g11680' => 'ccan', 'Cc02_g15610' => 'ccan', 'Cc05_g04350' => 'ccan', 'Cc09_g01580' => 'ccan', 'CDE01G0795' => 'cde', 'CDE02G2024' => 'cde', 'CDE02G2260' => 'cde', 'CDE02G4561' => 'cde', 'CDE05G2733' => 'cde', 'CDE05G3422' => 'cde', 'CDE06G2003' => 'cde', 'CDE08G0576' => 'cde', 'CDE09G0048' => 'cde', 'CDE11G0805' => 'cde', 'Cfa003644' => 'cfa', 'Cfa006290' => 'cfa', 'Cfa010080' => 'cfa', 'Cfa011376' => 'cfa', 'Cfa011576' => 'cfa', 'Cfa011577' => 'cfa', 'Cfa014389' => 'cfa', 'Ciclev10006044m.g' => 'ccl', 'Ciclev10006954m.g' => 'ccl', 'Ciclev10015131m.g' => 'ccl', 'Ciclev10015580m.g' => 'ccl', 'Ciclev10028359m.g' => 'ccl', 'Ciclev10028573m.g' => 'ccl', 'CiPaw.03G159300' => 'cil', 'CiPaw.04G115100' => 'cil', 'CiPaw.09G092800' => 'cil', 'CiPaw.10G071800' => 'cil', 'CiPaw.13G105800' => 'cil', 'CiPaw.13G141000' => 'cil', 'CiPaw.14G103400' => 'cil', 'ClCG01G012700' => 'cla', 'ClCG01G012720' => 'cla', 'ClCG01G021920' => 'cla', 'ClCG02G008870' => 'cla', 'ClCG02G020840' => 'cla', 'ClCG02G021930' => 'cla', 'COL.COLO4_19302' => 'col', 'COL.COLO4_25262' => 'col', 'COL.COLO4_31788' => 'col', 'Cpa.g.c34684' => 'cpa', 'Cpa.g.c36520.1' => 'cpa', 'Cpa.g.c45626' => 'cpa', 'Cpa.g.sc121.17' => 'cpa', 'Cpa.g.sc13.22' => 'cpa', 'Cpa.g.sc87.88' => 'cpa', 'Cre06.g261800' => 'cre', 'CsaV3_1G014500' => 'csa', 'CsaV3_1G014510' => 'csa', 'CsaV3_2G034880' => 'csa', 'CsaV3_6G014760' => 'csa', 'CsaV3_6G021500' => 'csa', 'CsaV3_6G048980' => 'csa', 'CSS0002511' => 'camsi', 'CSS0007556' => 'camsi', 'CSS0008532' => 'camsi', 'CSS0009709' => 'camsi', 'CSS0010486' => 'camsi', 'CSS0016768' => 'camsi', 'CSS0023512' => 'camsi', 'CSS0025341' => 'camsi', 'CSS0027999' => 'camsi', 'CSS0028944' => 'camsi', 'CSS0032292' => 'camsi', 'CSS0032464' => 'camsi', 'CSS0037153' => 'camsi', 'CSS0039256' => 'camsi', 'CSS0048392' => 'camsi', 'CSS0050458' => 'camsi', 'DCAR_004224' => 'dca', 'DCAR_006147' => 'dca', 'DCAR_006465' => 'dca', 'DCAR_008159' => 'dca', 'DCAR_012164' => 'dca', 'DCAR_019764' => 'dca', 'Dinv05418' => 'din', 'Dinv10839' => 'din', 'Dinv12521' => 'din', 'Dinv13900' => 'din', 'Dinv29426' => 'din', 'Duzib150G0263' => 'dzi', 'Duzib168G1178' => 'dzi', 'Duzib168G1924' => 'dzi', 'Duzib170G0299' => 'dzi', 'Duzib170G0813' => 'dzi', 'Duzib235G1128' => 'dzi', 'Duzib248G1060' => 'dzi', 'ECA232G1910' => 'eca', 'ECA233G4621' => 'eca', 'ECA238G1216' => 'eca', 'ECA238G1784' => 'eca', 'ECA248G1242' => 'eca', 'EL10Ac8g20071' => 'bvu', 'EL10Ac9g21086' => 'bvu', 'EL10Ac9g22407' => 'bvu', 'EL10Ac9g22412' => 'bvu', 'Eucgr.A01119' => 'egr', 'Eucgr.E04043' => 'egr', 'Eucgr.J00428' => 'egr', 'Eucgr.J00958' => 'egr', 'FAN11G3091' => 'fan', 'FAN11G3651' => 'fan', 'FAN16G2566' => 'fan', 'FAN21G3155' => 'fan', 'FAN21G3400' => 'fan', 'FAN21G3543' => 'fan', 'FAN25G0234' => 'fan', 'FAN25G1422' => 'fan', 'FAN25G3392' => 'fan', 'FvH4_3g01940' => 'fve', 'FvH4_3g29870' => 'fve', 'FvH4_3g33680' => 'fve', 'Glyma.09G004200' => 'gma', 'Glyma.11G151288' => 'gma', 'Glyma.11G189100' => 'gma', 'Glyma.12G072500' => 'gma', 'Glyma.12G085500' => 'gma', 'Glyma.12G181800' => 'gma', 'Glyma.12G193000' => 'gma', 'Glyma.13G309300' => 'gma', 'Glyma.13G319000' => 'gma', 'Glyma.17G012600' => 'gma', 'Gohir.A06G148600' => 'ghi', 'Gohir.A07G115800' => 'ghi', 'Gohir.A08G003600' => 'ghi', 'Gohir.A09G093300' => 'ghi', 'Gohir.A09G105400' => 'ghi', 'Gohir.A09G105500' => 'ghi', 'Gohir.D06G154600' => 'ghi', 'Gohir.D07G120200' => 'ghi', 'Gohir.D08G013900' => 'ghi', 'Gohir.D09G093100' => 'ghi', 'Gohir.D09G102200' => 'ghi', 'Gohir.D09G102300' => 'ghi', 'Gorai.001G129400' => 'gra', 'Gorai.004G008200' => 'gra', 'Gorai.006G109800' => 'gra', 'Gorai.006G119500' => 'gra', 'Gorai.006G121300' => 'gra', 'Gorai.010G180700' => 'gra', 'GSVIVG01012716001' => 'vvi', 'GSVIVG01025118001' => 'vvi', 'GSVIVG01030439001' => 'vvi', 'GSVIVG01031397001' => 'vvi', 'HanXRQChr01g0004201' => 'han', 'HanXRQChr02g0054941' => 'han', 'HanXRQChr05g0141811' => 'han', 'HanXRQChr07g0197751' => 'han', 'HanXRQChr11g0346691' => 'han', 'HanXRQChr13g0396971' => 'han', 'HanXRQChr14g0432951' => 'han', 'HanXRQChr14g0452001' => 'han', 'HanXRQChr15g0496681' => 'han', 'HanXRQChr17g0557491' => 'han', 'HanXRQChr17g0557501' => 'han', 'Haze_06809' => 'cav', 'Haze_12852' => 'cav', 'Haze_15850' => 'cav', 'Haze_23446' => 'cav', 'Haze_23942' => 'cav', 'Haze_23943' => 'cav', 'Hma1.2p1_0091F.1_g046450' => 'hma', 'Hma1.2p1_0128F.1_g059910' => 'hma', 'Hma1.2p1_0249F.1_g102260' => 'hma', 'Hma1.2p1_0453F.1_g156190' => 'hma', 'Hma1.2p1_0695F.1_g204380' => 'hma', 'Hma1.2p1_0749F.1_g212650' => 'hma', 'Hma1.2p1_2156F.1_g315420' => 'hma', 'Hma1.2p1_2686F.1_g326940' => 'hma', 'HPP92_006428' => 'vpl', 'HPP92_012069' => 'vpl', 'HPP92_014129' => 'vpl', 'HPP92_014133' => 'vpl', 'HPP92_017315' => 'vpl', 'HPP92_026445' => 'vpl', 'HPP92_026446' => 'vpl', 'Hund00774' => 'sun', 'Hund07682' => 'sun', 'Hund21413' => 'sun', 'Hund23462' => 'sun', 'Hund23463' => 'sun', 'Lalb_Chr03g0027911' => 'lal', 'Lalb_Chr13g0304271' => 'lal', 'Lalb_Chr19g0137471' => 'lal', 'Lalb_Chr22g0350651' => 'lal', 'Lalb_Chr24g0395151' => 'lal', 'Lj1A1231T40' => 'lonja', 'Lj1A221T48' => 'lonja', 'Lj1C924T12' => 'lonja', 'Lj2C993G6' => 'lonja', 'Lj3g0005790' => 'lja', 'Lj3g0015432' => 'lja', 'Lj3g0017722' => 'lja', 'Lj3g0018497' => 'lja', 'Lj4g0025071' => 'lja', 'Lsat_1_v5_gn_1_129680' => 'lsa', 'Lsat_1_v5_gn_2_25321' => 'lsa', 'Lsat_1_v5_gn_2_95461' => 'lsa', 'Lsat_1_v5_gn_4_159620' => 'lsa', 'Lsat_1_v5_gn_6_41301' => 'lsa', 'Lsat_1_v5_gn_6_74660' => 'lsa', 'Lsat_1_v5_gn_7_11520' => 'lsa', 'Lsat_1_v5_gn_9_67680' => 'lsa', 'Manes.04G008300' => 'mes', 'Manes.04G008400' => 'mes', 'Manes.04G026500' => 'mes', 'Manes.10G135300' => 'mes', 'Manes.11G157300' => 'mes', 'Manes.12G074000' => 'mes', 'Manes.16G006200' => 'mes', 'Manes.17G026400' => 'mes', 'Mapoly0024s0086' => 'mpo', 'Mapoly0024s0087' => 'mpo', 'Mapoly0071s0057' => 'mpo', 'Mapoly0204s0012' => 'mpo', 'MBI04_g37681_MAGBIO' => 'mbi', 'MBI05_g17779_MAGBIO' => 'mbi', 'MBI12_g31184_MAGBIO' => 'mbi', 'MBI17_g11083_MAGBIO' => 'mbi', 'MBI18_g03883_MAGBIO' => 'mbi', 'MBI18_g28940_MAGBIO' => 'mbi', 'MCO01G690' => 'mco', 'MD03G1109900' => 'mdo', 'MD03G1134800' => 'mdo', 'MD05G1348000' => 'mdo', 'MD10G1322400' => 'mdo', 'MD11G1123300' => 'mdo', 'MD11G1157600' => 'mdo', 'Medtr2g084875' => 'mtr', 'Medtr2g088130' => 'mtr', 'Medtr4g055310' => 'mtr', 'Medtr4g061070' => 'mtr', 'Medtr4g132250' => 'mtr', 'MELO3C004795.2' => 'cme', 'MELO3C004797.2' => 'cme', 'MELO3C007396.2' => 'cme', 'MELO3C019277.2' => 'cme', 'MELO3C021449.2' => 'cme', 'MELO3C025736.2' => 'cme', 'Migut.D02175' => 'egut', 'Migut.H01573' => 'egut', 'Migut.M01327' => 'egut', 'Migut.N02513' => 'egut', 'MSTRG.14638' => 'ama', 'MSTRG.18632' => 'ama', 'MSTRG.7203' => 'ama', 'Nitab4.5_0000533g0140' => 'nta', 'Nitab4.5_0000888g0150' => 'nta', 'Nitab4.5_0001453g0040' => 'nta', 'Nitab4.5_0002827g0090' => 'nta', 'Nitab4.5_0003082g0040' => 'nta', 'Nitab4.5_0007799g0040' => 'nta', 'Nitab4.5_0008983g0010' => 'nta', 'Nitab4.5_0009017g0020' => 'nta', 'Nn1g02132' => 'nnu', 'Nn1g03492' => 'nnu', 'Nn1g03493' => 'nnu', 'Nn1g03494' => 'nnu', 'Nn1g07164' => 'nnu', 'Nn1g07291' => 'nnu', 'Nn2g10655' => 'nnu', 'Nn2g11652' => 'nnu', 'Nn2g14008' => 'nnu', 'Nn3g17476' => 'nnu', 'Nn3g17477' => 'nnu', 'Nn4g22370' => 'nnu', 'Nn4g25255' => 'nnu', 'Nn5g27755' => 'nnu', 'Nn6g34260' => 'nnu', 'Nn6g35041' => 'nnu', 'Oeu005924.1' => 'oeu', 'Oeu008383.1' => 'oeu', 'Oeu014928.1' => 'oeu', 'Oeu019889.1' => 'oeu', 'Oeu022271.1' => 'oeu', 'Oeu025271.1' => 'oeu', 'Oeu036302.1' => 'oeu', 'Oeu044100.1' => 'oeu', 'Os01g0528300' => 'osa', 'Os03g0286200' => 'osa', 'Os04g0406600' => 'osa', 'Os07g0512000' => 'osa', 'Os07g0694600' => 'osa', 'Os08g0411000' => 'osa', 'Os09g0565700' => 'osa', 'Os09g0566050' => 'osa', 'Os10g0523700' => 'osa', 'Peaxi162Scf00002g00514' => 'pax', 'Peaxi162Scf00047g01817' => 'pax', 'Peaxi162Scf00114g00001' => 'pax', 'Peaxi162Scf00147g00613' => 'pax', 'Peaxi162Scf00389g00425' => 'pax', 'PGR042G1139' => 'pgr', 'PGR042G3273' => 'pgr', 'PGR102G2180' => 'pgr', 'PGR119G0234' => 'pgr', 'PGR119G0668' => 'pgr', 'PGSC0003DMG400007122' => 'stu', 'PGSC0003DMG400016478' => 'stu', 'PGSC0003DMG400025374' => 'stu', 'PGSC0003DMG400026536' => 'stu', 'Phvul.003G079600' => 'pvu', 'Phvul.005G115600' => 'pvu', 'Phvul.005G127100' => 'pvu', 'Phvul.006G149500' => 'pvu', 'Phvul.006G149600' => 'pvu', 'Phvul.011G071800' => 'pvu', 'Phvul.011G090400' => 'pvu', 'Potri.004G013400' => 'ptr', 'Potri.004G188100' => 'ptr', 'Potri.008G195500' => 'ptr', 'Potri.009G148800' => 'ptr', 'Potri.011G004700' => 'ptr', 'Pp3c17_22810' => 'ppa', 'Pp3c18_4480' => 'ppa', 'Pp3c19_13030' => 'ppa', 'Pp3c1_33620' => 'ppa', 'Pp3c2_9380' => 'ppa', 'PRCOL_00001023' => 'pco', 'Prupe.3G216300' => 'ppe', 'Prupe.4G019500' => 'ppe', 'Prupe.6G092500' => 'ppe', 'Prupe.6G119200' => 'ppe', 'Psat0s1945g0080' => 'psa', 'Psat0s4167g0040' => 'psa', 'Psat1g185800' => 'psa', 'Psat4g006440' => 'psa', 'Psat4g006480' => 'psa', 'Psat4g168120' => 'psa', 'Psat5g255680' => 'psa', 'Psat5g261760' => 'psa', 'Psat7g222120' => 'psa', 'PSO063G7252' => 'pso', 'PSO170G4778' => 'pso', 'PSO210G2249' => 'pso', 'PSO339G2411' => 'pso', 'PSO339G2457' => 'pso', 'PSO339G2854' => 'pso', 'PSO339G4288' => 'pso', 'PSO339G4615' => 'pso', 'PSO384G2796' => 'pso', 'PSO384G2940' => 'pso', 'PSO384G4227' => 'pso', 'PSO478G1425' => 'pso', 'PSO541G3863' => 'pso', 'PSO675G0507' => 'pso', 'PSO782G0338' => 'pso', 'PSO832G0644' => 'pso', 'QL01p013664' => 'qlo', 'QL01p036598' => 'qlo', 'QL05p072984' => 'qlo', 'QL08p005768' => 'qlo', 'QL08p032743' => 'qlo', 'QL93p0073_0439' => 'qlo', 'QL93p0073_0444' => 'qlo', 'RcHm_v2.0_Chr5g0002851' => 'rch', 'RcHm_v2.0_Chr5g0055201' => 'rch', 'RcHm_v2.0_Chr5g0061191' => 'rch', 'RcHm_v2.0_Chr7g0203231' => 'rch', 'Rhsim01G0208100' => 'rsi', 'Rhsim01G0208200' => 'rsi', 'Rhsim02G0106500' => 'rsi', 'Rhsim03G0107900' => 'rsi', 'Rhsim06G0163400' => 'rsi', 'Rhsim13G0105200' => 'rsi', 'Sabra04G0006300' => 'sbr', 'Sabra04G0127000' => 'sbr', 'Sabra08G0148700' => 'sbr', 'Sabra09G0117400' => 'sbr', 'SalBow1G3326' => 'sbo', 'SalBow3G3228' => 'sbo', 'SalBow6G1634' => 'sbo', 'SalBow6G3603' => 'sbo', 'SalBow6G5266' => 'sbo', 'SalBow7G2265' => 'sbo', 'SalBow8G0850' => 'sbo', 'SalBow8G2592' => 'sbo', 'Sc05g0009240' => 'sci', 'Sc12g0002300' => 'sci', 'Sc21g0000100' => 'sci', 'Sc21g0004720' => 'sci', 'Sed0002949' => 'sed', 'Sed0004114' => 'sed', 'Sed0004306' => 'sed', 'Sed0006172' => 'sed', 'Sed0008413' => 'sed', 'Sed0013809' => 'sed', 'Sed0019556' => 'sed', 'SEGI_03570' => 'sgi', 'SEGI_07859' => 'sgi', 'SEGI_15042' => 'sgi', 'SEGI_16263' => 'sgi', 'SEGI_16552' => 'sgi', 'SEGI_24331' => 'sgi', 'SEGI_27316' => 'sgi', 'SEGI_29521' => 'sgi', 'SEGI_41342' => 'sgi', 'SGA_v2.0_scaffold27G11617' => 'sas', 'SGA_v2.0_scaffold316G48428' => 'sas', 'SGA_v2.0_scaffold49G18261' => 'sas', 'SGA_v2.0_scaffold7G03831' => 'sas', 'SGA_v2.0_scaffold93G28359' => 'sas', 'SHI02210' => 'shi', 'SHI06028' => 'shi', 'SHI06321' => 'shi', 'SMO111G0012' => 'smo', 'SMO228G0080' => 'smo', 'SMO356G0756' => 'smo', 'Solyc02g080620.3' => 'sly', 'Solyc06g074530.1' => 'sly', 'Solyc11g066890.1' => 'sly', 'Solyc11g072520.3' => 'sly', 'Sopen02g025330' => 'spe', 'Sopen06g031000' => 'spe', 'Sopen09g008240' => 'spe', 'Sopen09g025210' => 'spe', 'Sopen11g026600' => 'spe', 'Sopen11g030170' => 'spe', 'Sp1g10420' => 'spa', 'Sp3g06570' => 'spa', 'Sp4g10660' => 'spa', 'Sp5g16460' => 'spa', 'Sp6g22710' => 'spa', 'TAR365G0112' => 'tar', 'TAR369G0717' => 'tar', 'TAR374G0976' => 'tar', 'TAR623G1128' => 'tar', 'TAR626G1937' => 'tar', 'TAR627G0123' => 'tar', 'TAR628G0305' => 'tar', 'TAR636G1176' => 'tar', 'TAR636G2442' => 'tar', 'THA.LOC104800556' => 'tha', 'THA.LOC104809501' => 'tha', 'THA.LOC104815126' => 'tha', 'THA.LOC104815732' => 'tha', 'THA.LOC104823528' => 'tha', 'Thecc.02G365600' => 'tca', 'Thecc.06G222300' => 'tca', 'Thecc.09G261800' => 'tca', 'Thecc.09G291400' => 'tca', 'Thhalv10003028m.g' => 'esa', 'Thhalv10007886m.g' => 'esa', 'Thhalv10016085m.g' => 'esa', 'Thhalv10016681m.g' => 'esa', 'Thhalv10020951m.g' => 'esa', 'TPR.G15598' => 'tpr', 'TPR.G29305' => 'tpr', 'TPR.G32395' => 'tpr', 'TPR.G36998' => 'tpr', 'TPR.G4227' => 'tpr', 'TWI18G1433' => 'twi', 'TWI31G0755' => 'twi', 'TWI38G0912' => 'twi', 'TWI75G1097' => 'twi', 'TWI75G1619' => 'twi', 'TWI79G1336' => 'twi', 'unitig_0.g943' => 'ugi', 'unitig_0.g944' => 'ugi', 'unitig_22.g6646' => 'ugi', 'unitig_37.g12681' => 'ugi', 'unitig_8.g3290' => 'ugi', 'vmacro03278' => 'vma', 'vmacro12197' => 'vma', 'vmacro14478' => 'vma', 'vmacro15787' => 'vma', 'vmacro15789' => 'vma', 'vmacro15790' => 'vma', 'vmacro15806' => 'vma', 'vmacro22907' => 'vma', 'vmacro22908' => 'vma', 'vmacro22909' => 'vma', 'vmacro23108' => 'vma', 'VMungo0540G0540' => 'vmu', 'VMungo0540G2468' => 'vmu', 'VMungo1080G0390' => 'vmu', 'VMungo1080G1165' => 'vmu', 'VMungo1127G0170' => 'vmu', 'VMungo1127G2099' => 'vmu', 'VMungo1215G3013' => 'vmu', 'Zm00001eb013110' => 'zma', 'Zm00001eb084260' => 'zma', 'Zm00001eb096110' => 'zma', 'Zm00001eb217510' => 'zma', 'Zm00001eb322550' => 'zma', 'Zm00001eb390770' => 'zma', 'Zm00001eb397170' => 'zma', 'Zm00001eb404610' => 'zma', 'Zm00001eb421790' => 'zma' ) $gf_id = 'HOM05D000911' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000911' ) $data_identifier = 'HOM05D000911' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 16, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 5, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 6, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 8, 'nnu' => (int) 16, 'oeu' => (int) 8, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 5, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 16, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421790' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000911', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27780' => 'bna', 'A03p35380' => 'bna', 'A04p21160' => 'bna', 'A05p40570' => 'bna', 'A06p26900' => 'bna', 'A08p33230' => 'bna', 'A09p65960' => 'bna', 'A10p18290' => 'bna', 'Aa31LG1G12990' => 'aar', 'Aa31LG1G2980' => 'aar', 'Aa31LG4G14320' => 'aar', 'Aa31LG7G11800' => 'aar', 'Aa31sc36G50' => 'aar', 'Aa31sc36G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3721' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5459' => 'aag', 'Actinidia03028' => 'ach', 'Actinidia03753' => 'ach', 'Actinidia04187' => 'ach', 'Actinidia05509' => 'ach', 'Actinidia24180' => 'ach', 'Actinidia26906' => 'ach', 'Actinidia37097' => 'ach', 'Actinidia38249' => 'ach', 'Ah.01g003470' => 'amhyb', 'Ah.01g004580' => 'amhyb', 'Ah.01g014850' => 'amhyb', 'Ah.01g016830' => 'amhyb', 'Ah.14g088000' => 'amhyb', 'AL1G22980' => 'aly', 'AL3G18990' => 'aly', 'AL4G22440' => 'aly', 'AL4G33180' => 'aly', 'AL5G22920' => 'aly', 'AL6G33660' => 'aly', 'AL8G20720' => 'aly', 'Aqoxy1G00935' => 'aox', 'Aqoxy1G02094' => 'aox', 'Aqoxy2G01239' => 'aox', 'Aqoxy4G01870' => 'aox', 'Aqoxy7G00450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.36ZVTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71EM27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5D6C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH3WRE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3NCM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RIM768' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YB5YRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z36GDV' => 'arhy', 'AT1G08250' => 'ath', 'AT1G11790' => 'ath', 'AT2G27820' => 'ath', 'AT3G07630' => 'ath', 'AT3G44720' => 'ath', 'AT5G22630' => 'ath', 'ATR0693G304' => 'atr', 'ATR0794G109' => 'atr', 'ATR0820G120' => 'atr', 'ATR1159G064' => 'atr', 'Atru.chr10.2239' => 'acertr', 'Atru.chr3.3371' => 'acertr', 'Atru.chr6.3202' => 'acertr', 'AUR62006499' => 'cqu', 'AUR62012718' => 'cqu', 'AUR62021938' => 'cqu', 'AUR62023932' => 'cqu', 'AUR62025034' => 'cqu', 'AUR62025035' => 'cqu', 'AUR62038307' => 'cqu', 'AUR62043466' => 'cqu', 'BcaB02g10748' => 'bca', 'BcaB03g13231' => 'bca', 'BcaB03g14689' => 'bca', 'BcaB05g22716' => 'bca', 'BcaB06g28172' => 'bca', 'BcaB08g36413' => 'bca', 'BcaC01g02186' => 'bca', 'BcaC01g04272' => 'bca', 'BcaC02g08080' => 'bca', 'BcaC02g08227' => 'bca', 'BcaC03g13901' => 'bca', 'BcaC04g19593' => 'bca', 'BcaC04g20874' => 'bca', 'BcaC05g29557' => 'bca', 'BcaC06g35505' => 'bca', 'BcaC07g41954' => 'bca', 'BcaC07g41955' => 'bca', 'BcaC07g41956' => 'bca', 'BcaC07g42519' => 'bca', 'BcaC07g42520' => 'bca', 'BcaC07g42523' => 'bca', 'BcaC07g42524' => 'bca', 'BcaC07g42525' => 'bca', 'BcaC08g47480' => 'bca', 'BcaC08g47481' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00530' => 'bna', 'BolC2t07178H' => 'bol', 'BolC3t16567H' => 'bol', 'BolC4t27234H' => 'bol', 'BolC5t29728H' => 'bol', 'BolC5t34622H' => 'bol', 'BolC6t40321H' => 'bol', 'BolC7t42028H' => 'bol', 'BolC8t49125H' => 'bol', 'BolC8t52538H' => 'bol', 'BolC8t52539H' => 'bol', 'BolC9t56681H' => 'bol', 'BolC9t58266H' => 'bol', 'BolSC21t60294H' => 'bol', 'BraA02t05670Z' => 'bra', 'BraA03t12716Z' => 'bra', 'BraA04t17685Z' => 'bra', 'BraA05t22788Z' => 'bra', 'BraA06t24032Z' => 'bra', 'BraA06t25625Z' => 'bra', 'BraA07t27930Z' => 'bra', 'BraA08t35242Z' => 'bra', 'BraA09t38609Z' => 'bra', 'BraA10t43905Z' => 'bra', 'C02p11060' => 'bna', 'C03p42990' => 'bna', 'C03p67310' => 'bna', 'C04p56990' => 'bna', 'C04p58660' => 'bna', 'C05p09890' => 'bna', 'C05p59680' => 'bna', 'C06p19830' => 'bna', 'C06p53040' => 'bna', 'C07p15230' => 'bna', 'C08p50070' => 'bna', 'C08p50090' => 'bna', 'C09p38330' => 'bna', 'C09p53940' => 'bna', 'CAN.G1014.1' => 'can', 'CAN.G644.30' => 'can', 'CAN.G84.47' => 'can', 'CAN.G919.8' => 'can', 'CANSAT54G0113' => 'cansat', 'CANSAT54G1286' => 'cansat', 'CANSAT64G1020' => 'cansat', 'CARHR008080' => 'chi', 'CARHR008090' => 'chi', 'CARHR012130' => 'chi', 'CARHR038390' => 'chi', 'CARHR082330' => 'chi', 'CARHR120520' => 'chi', 'CARHR151470' => 'chi', 'CARHR190950' => 'chi', 'Carub.0001s0760' => 'cru', 'Carub.0001s1146' => 'cru', 'Carub.0003s0721' => 'cru', 'Carub.0004s0858' => 'cru', 'Carub.0005s1040' => 'cru', 'Carub.0006s2035' => 'cru', 'Carub.0015s0005' => 'cru', 'Ca_01607_v3' => 'car', 'Ca_01677_v3' => 'car', 'Ca_06087_v3' => 'car', 'Ca_19238_v3' => 'car', 'Ca_19373_v3' => 'car', 'Ca_21079_v3' => 'car', 'CBR_g54016' => 'cbr', 'CBR_g54018' => 'cbr', 'CBR_g54020' => 'cbr', 'Cc01_g09780' => 'ccan', 'Cc01_g11680' => 'ccan', 'Cc02_g15610' => 'ccan', 'Cc05_g04350' => 'ccan', 'Cc09_g01580' => 'ccan', 'CDE01G0795' => 'cde', 'CDE02G2024' => 'cde', 'CDE02G2260' => 'cde', 'CDE02G4561' => 'cde', 'CDE05G2733' => 'cde', 'CDE05G3422' => 'cde', 'CDE06G2003' => 'cde', 'CDE08G0576' => 'cde', 'CDE09G0048' => 'cde', 'CDE11G0805' => 'cde', 'Cfa003644' => 'cfa', 'Cfa006290' => 'cfa', 'Cfa010080' => 'cfa', 'Cfa011376' => 'cfa', 'Cfa011576' => 'cfa', 'Cfa011577' => 'cfa', 'Cfa014389' => 'cfa', 'Ciclev10006044m.g' => 'ccl', 'Ciclev10006954m.g' => 'ccl', 'Ciclev10015131m.g' => 'ccl', 'Ciclev10015580m.g' => 'ccl', 'Ciclev10028359m.g' => 'ccl', 'Ciclev10028573m.g' => 'ccl', 'CiPaw.03G159300' => 'cil', 'CiPaw.04G115100' => 'cil', 'CiPaw.09G092800' => 'cil', 'CiPaw.10G071800' => 'cil', 'CiPaw.13G105800' => 'cil', 'CiPaw.13G141000' => 'cil', 'CiPaw.14G103400' => 'cil', 'ClCG01G012700' => 'cla', 'ClCG01G012720' => 'cla', 'ClCG01G021920' => 'cla', 'ClCG02G008870' => 'cla', 'ClCG02G020840' => 'cla', 'ClCG02G021930' => 'cla', 'COL.COLO4_19302' => 'col', 'COL.COLO4_25262' => 'col', 'COL.COLO4_31788' => 'col', 'Cpa.g.c34684' => 'cpa', 'Cpa.g.c36520.1' => 'cpa', 'Cpa.g.c45626' => 'cpa', 'Cpa.g.sc121.17' => 'cpa', 'Cpa.g.sc13.22' => 'cpa', 'Cpa.g.sc87.88' => 'cpa', 'Cre06.g261800' => 'cre', 'CsaV3_1G014500' => 'csa', 'CsaV3_1G014510' => 'csa', 'CsaV3_2G034880' => 'csa', 'CsaV3_6G014760' => 'csa', 'CsaV3_6G021500' => 'csa', 'CsaV3_6G048980' => 'csa', 'CSS0002511' => 'camsi', 'CSS0007556' => 'camsi', 'CSS0008532' => 'camsi', 'CSS0009709' => 'camsi', 'CSS0010486' => 'camsi', 'CSS0016768' => 'camsi', 'CSS0023512' => 'camsi', 'CSS0025341' => 'camsi', 'CSS0027999' => 'camsi', 'CSS0028944' => 'camsi', 'CSS0032292' => 'camsi', 'CSS0032464' => 'camsi', 'CSS0037153' => 'camsi', 'CSS0039256' => 'camsi', 'CSS0048392' => 'camsi', 'CSS0050458' => 'camsi', 'DCAR_004224' => 'dca', 'DCAR_006147' => 'dca', 'DCAR_006465' => 'dca', 'DCAR_008159' => 'dca', 'DCAR_012164' => 'dca', 'DCAR_019764' => 'dca', 'Dinv05418' => 'din', 'Dinv10839' => 'din', 'Dinv12521' => 'din', 'Dinv13900' => 'din', 'Dinv29426' => 'din', 'Duzib150G0263' => 'dzi', 'Duzib168G1178' => 'dzi', 'Duzib168G1924' => 'dzi', 'Duzib170G0299' => 'dzi', 'Duzib170G0813' => 'dzi', 'Duzib235G1128' => 'dzi', 'Duzib248G1060' => 'dzi', 'ECA232G1910' => 'eca', 'ECA233G4621' => 'eca', 'ECA238G1216' => 'eca', 'ECA238G1784' => 'eca', 'ECA248G1242' => 'eca', 'EL10Ac8g20071' => 'bvu', 'EL10Ac9g21086' => 'bvu', 'EL10Ac9g22407' => 'bvu', 'EL10Ac9g22412' => 'bvu', 'Eucgr.A01119' => 'egr', 'Eucgr.E04043' => 'egr', 'Eucgr.J00428' => 'egr', 'Eucgr.J00958' => 'egr', 'FAN11G3091' => 'fan', 'FAN11G3651' => 'fan', 'FAN16G2566' => 'fan', 'FAN21G3155' => 'fan', 'FAN21G3400' => 'fan', 'FAN21G3543' => 'fan', 'FAN25G0234' => 'fan', 'FAN25G1422' => 'fan', 'FAN25G3392' => 'fan', 'FvH4_3g01940' => 'fve', 'FvH4_3g29870' => 'fve', 'FvH4_3g33680' => 'fve', 'Glyma.09G004200' => 'gma', 'Glyma.11G151288' => 'gma', 'Glyma.11G189100' => 'gma', 'Glyma.12G072500' => 'gma', 'Glyma.12G085500' => 'gma', 'Glyma.12G181800' => 'gma', 'Glyma.12G193000' => 'gma', 'Glyma.13G309300' => 'gma', 'Glyma.13G319000' => 'gma', 'Glyma.17G012600' => 'gma', 'Gohir.A06G148600' => 'ghi', 'Gohir.A07G115800' => 'ghi', 'Gohir.A08G003600' => 'ghi', 'Gohir.A09G093300' => 'ghi', 'Gohir.A09G105400' => 'ghi', 'Gohir.A09G105500' => 'ghi', 'Gohir.D06G154600' => 'ghi', 'Gohir.D07G120200' => 'ghi', 'Gohir.D08G013900' => 'ghi', 'Gohir.D09G093100' => 'ghi', 'Gohir.D09G102200' => 'ghi', 'Gohir.D09G102300' => 'ghi', 'Gorai.001G129400' => 'gra', 'Gorai.004G008200' => 'gra', 'Gorai.006G109800' => 'gra', 'Gorai.006G119500' => 'gra', 'Gorai.006G121300' => 'gra', 'Gorai.010G180700' => 'gra', 'GSVIVG01012716001' => 'vvi', 'GSVIVG01025118001' => 'vvi', 'GSVIVG01030439001' => 'vvi', 'GSVIVG01031397001' => 'vvi', 'HanXRQChr01g0004201' => 'han', 'HanXRQChr02g0054941' => 'han', 'HanXRQChr05g0141811' => 'han', 'HanXRQChr07g0197751' => 'han', 'HanXRQChr11g0346691' => 'han', 'HanXRQChr13g0396971' => 'han', 'HanXRQChr14g0432951' => 'han', 'HanXRQChr14g0452001' => 'han', 'HanXRQChr15g0496681' => 'han', 'HanXRQChr17g0557491' => 'han', 'HanXRQChr17g0557501' => 'han', 'Haze_06809' => 'cav', 'Haze_12852' => 'cav', 'Haze_15850' => 'cav', 'Haze_23446' => 'cav', 'Haze_23942' => 'cav', 'Haze_23943' => 'cav', 'Hma1.2p1_0091F.1_g046450' => 'hma', 'Hma1.2p1_0128F.1_g059910' => 'hma', 'Hma1.2p1_0249F.1_g102260' => 'hma', 'Hma1.2p1_0453F.1_g156190' => 'hma', 'Hma1.2p1_0695F.1_g204380' => 'hma', 'Hma1.2p1_0749F.1_g212650' => 'hma', 'Hma1.2p1_2156F.1_g315420' => 'hma', 'Hma1.2p1_2686F.1_g326940' => 'hma', 'HPP92_006428' => 'vpl', 'HPP92_012069' => 'vpl', 'HPP92_014129' => 'vpl', 'HPP92_014133' => 'vpl', 'HPP92_017315' => 'vpl', 'HPP92_026445' => 'vpl', 'HPP92_026446' => 'vpl', 'Hund00774' => 'sun', 'Hund07682' => 'sun', 'Hund21413' => 'sun', 'Hund23462' => 'sun', 'Hund23463' => 'sun', 'Lalb_Chr03g0027911' => 'lal', 'Lalb_Chr13g0304271' => 'lal', 'Lalb_Chr19g0137471' => 'lal', 'Lalb_Chr22g0350651' => 'lal', 'Lalb_Chr24g0395151' => 'lal', 'Lj1A1231T40' => 'lonja', 'Lj1A221T48' => 'lonja', 'Lj1C924T12' => 'lonja', 'Lj2C993G6' => 'lonja', 'Lj3g0005790' => 'lja', 'Lj3g0015432' => 'lja', 'Lj3g0017722' => 'lja', 'Lj3g0018497' => 'lja', 'Lj4g0025071' => 'lja', 'Lsat_1_v5_gn_1_129680' => 'lsa', 'Lsat_1_v5_gn_2_25321' => 'lsa', 'Lsat_1_v5_gn_2_95461' => 'lsa', 'Lsat_1_v5_gn_4_159620' => 'lsa', 'Lsat_1_v5_gn_6_41301' => 'lsa', 'Lsat_1_v5_gn_6_74660' => 'lsa', 'Lsat_1_v5_gn_7_11520' => 'lsa', 'Lsat_1_v5_gn_9_67680' => 'lsa', 'Manes.04G008300' => 'mes', 'Manes.04G008400' => 'mes', 'Manes.04G026500' => 'mes', 'Manes.10G135300' => 'mes', 'Manes.11G157300' => 'mes', 'Manes.12G074000' => 'mes', 'Manes.16G006200' => 'mes', 'Manes.17G026400' => 'mes', 'Mapoly0024s0086' => 'mpo', 'Mapoly0024s0087' => 'mpo', 'Mapoly0071s0057' => 'mpo', 'Mapoly0204s0012' => 'mpo', 'MBI04_g37681_MAGBIO' => 'mbi', 'MBI05_g17779_MAGBIO' => 'mbi', 'MBI12_g31184_MAGBIO' => 'mbi', 'MBI17_g11083_MAGBIO' => 'mbi', 'MBI18_g03883_MAGBIO' => 'mbi', 'MBI18_g28940_MAGBIO' => 'mbi', 'MCO01G690' => 'mco', 'MD03G1109900' => 'mdo', 'MD03G1134800' => 'mdo', 'MD05G1348000' => 'mdo', 'MD10G1322400' => 'mdo', 'MD11G1123300' => 'mdo', 'MD11G1157600' => 'mdo', 'Medtr2g084875' => 'mtr', 'Medtr2g088130' => 'mtr', 'Medtr4g055310' => 'mtr', 'Medtr4g061070' => 'mtr', 'Medtr4g132250' => 'mtr', 'MELO3C004795.2' => 'cme', 'MELO3C004797.2' => 'cme', 'MELO3C007396.2' => 'cme', 'MELO3C019277.2' => 'cme', 'MELO3C021449.2' => 'cme', 'MELO3C025736.2' => 'cme', 'Migut.D02175' => 'egut', 'Migut.H01573' => 'egut', 'Migut.M01327' => 'egut', 'Migut.N02513' => 'egut', 'MSTRG.14638' => 'ama', 'MSTRG.18632' => 'ama', 'MSTRG.7203' => 'ama', 'Nitab4.5_0000533g0140' => 'nta', 'Nitab4.5_0000888g0150' => 'nta', 'Nitab4.5_0001453g0040' => 'nta', 'Nitab4.5_0002827g0090' => 'nta', 'Nitab4.5_0003082g0040' => 'nta', 'Nitab4.5_0007799g0040' => 'nta', 'Nitab4.5_0008983g0010' => 'nta', 'Nitab4.5_0009017g0020' => 'nta', 'Nn1g02132' => 'nnu', 'Nn1g03492' => 'nnu', 'Nn1g03493' => 'nnu', 'Nn1g03494' => 'nnu', 'Nn1g07164' => 'nnu', 'Nn1g07291' => 'nnu', 'Nn2g10655' => 'nnu', 'Nn2g11652' => 'nnu', 'Nn2g14008' => 'nnu', 'Nn3g17476' => 'nnu', 'Nn3g17477' => 'nnu', 'Nn4g22370' => 'nnu', 'Nn4g25255' => 'nnu', 'Nn5g27755' => 'nnu', 'Nn6g34260' => 'nnu', 'Nn6g35041' => 'nnu', 'Oeu005924.1' => 'oeu', 'Oeu008383.1' => 'oeu', 'Oeu014928.1' => 'oeu', 'Oeu019889.1' => 'oeu', 'Oeu022271.1' => 'oeu', 'Oeu025271.1' => 'oeu', 'Oeu036302.1' => 'oeu', 'Oeu044100.1' => 'oeu', 'Os01g0528300' => 'osa', 'Os03g0286200' => 'osa', 'Os04g0406600' => 'osa', 'Os07g0512000' => 'osa', 'Os07g0694600' => 'osa', 'Os08g0411000' => 'osa', 'Os09g0565700' => 'osa', 'Os09g0566050' => 'osa', 'Os10g0523700' => 'osa', 'Peaxi162Scf00002g00514' => 'pax', 'Peaxi162Scf00047g01817' => 'pax', 'Peaxi162Scf00114g00001' => 'pax', 'Peaxi162Scf00147g00613' => 'pax', 'Peaxi162Scf00389g00425' => 'pax', 'PGR042G1139' => 'pgr', 'PGR042G3273' => 'pgr', 'PGR102G2180' => 'pgr', 'PGR119G0234' => 'pgr', 'PGR119G0668' => 'pgr', 'PGSC0003DMG400007122' => 'stu', 'PGSC0003DMG400016478' => 'stu', 'PGSC0003DMG400025374' => 'stu', 'PGSC0003DMG400026536' => 'stu', 'Phvul.003G079600' => 'pvu', 'Phvul.005G115600' => 'pvu', 'Phvul.005G127100' => 'pvu', 'Phvul.006G149500' => 'pvu', 'Phvul.006G149600' => 'pvu', 'Phvul.011G071800' => 'pvu', 'Phvul.011G090400' => 'pvu', 'Potri.004G013400' => 'ptr', 'Potri.004G188100' => 'ptr', 'Potri.008G195500' => 'ptr', 'Potri.009G148800' => 'ptr', 'Potri.011G004700' => 'ptr', 'Pp3c17_22810' => 'ppa', 'Pp3c18_4480' => 'ppa', 'Pp3c19_13030' => 'ppa', 'Pp3c1_33620' => 'ppa', 'Pp3c2_9380' => 'ppa', 'PRCOL_00001023' => 'pco', 'Prupe.3G216300' => 'ppe', 'Prupe.4G019500' => 'ppe', 'Prupe.6G092500' => 'ppe', 'Prupe.6G119200' => 'ppe', 'Psat0s1945g0080' => 'psa', 'Psat0s4167g0040' => 'psa', 'Psat1g185800' => 'psa', 'Psat4g006440' => 'psa', 'Psat4g006480' => 'psa', 'Psat4g168120' => 'psa', 'Psat5g255680' => 'psa', 'Psat5g261760' => 'psa', 'Psat7g222120' => 'psa', 'PSO063G7252' => 'pso', 'PSO170G4778' => 'pso', 'PSO210G2249' => 'pso', 'PSO339G2411' => 'pso', 'PSO339G2457' => 'pso', 'PSO339G2854' => 'pso', 'PSO339G4288' => 'pso', 'PSO339G4615' => 'pso', 'PSO384G2796' => 'pso', 'PSO384G2940' => 'pso', 'PSO384G4227' => 'pso', 'PSO478G1425' => 'pso', 'PSO541G3863' => 'pso', 'PSO675G0507' => 'pso', 'PSO782G0338' => 'pso', 'PSO832G0644' => 'pso', 'QL01p013664' => 'qlo', 'QL01p036598' => 'qlo', 'QL05p072984' => 'qlo', 'QL08p005768' => 'qlo', 'QL08p032743' => 'qlo', 'QL93p0073_0439' => 'qlo', 'QL93p0073_0444' => 'qlo', 'RcHm_v2.0_Chr5g0002851' => 'rch', 'RcHm_v2.0_Chr5g0055201' => 'rch', 'RcHm_v2.0_Chr5g0061191' => 'rch', 'RcHm_v2.0_Chr7g0203231' => 'rch', 'Rhsim01G0208100' => 'rsi', 'Rhsim01G0208200' => 'rsi', 'Rhsim02G0106500' => 'rsi', 'Rhsim03G0107900' => 'rsi', 'Rhsim06G0163400' => 'rsi', 'Rhsim13G0105200' => 'rsi', 'Sabra04G0006300' => 'sbr', 'Sabra04G0127000' => 'sbr', 'Sabra08G0148700' => 'sbr', 'Sabra09G0117400' => 'sbr', 'SalBow1G3326' => 'sbo', 'SalBow3G3228' => 'sbo', 'SalBow6G1634' => 'sbo', 'SalBow6G3603' => 'sbo', 'SalBow6G5266' => 'sbo', 'SalBow7G2265' => 'sbo', 'SalBow8G0850' => 'sbo', 'SalBow8G2592' => 'sbo', 'Sc05g0009240' => 'sci', 'Sc12g0002300' => 'sci', 'Sc21g0000100' => 'sci', 'Sc21g0004720' => 'sci', 'Sed0002949' => 'sed', 'Sed0004114' => 'sed', 'Sed0004306' => 'sed', 'Sed0006172' => 'sed', 'Sed0008413' => 'sed', 'Sed0013809' => 'sed', 'Sed0019556' => 'sed', 'SEGI_03570' => 'sgi', 'SEGI_07859' => 'sgi', 'SEGI_15042' => 'sgi', 'SEGI_16263' => 'sgi', 'SEGI_16552' => 'sgi', 'SEGI_24331' => 'sgi', 'SEGI_27316' => 'sgi', 'SEGI_29521' => 'sgi', 'SEGI_41342' => 'sgi', 'SGA_v2.0_scaffold27G11617' => 'sas', 'SGA_v2.0_scaffold316G48428' => 'sas', 'SGA_v2.0_scaffold49G18261' => 'sas', 'SGA_v2.0_scaffold7G03831' => 'sas', 'SGA_v2.0_scaffold93G28359' => 'sas', 'SHI02210' => 'shi', 'SHI06028' => 'shi', 'SHI06321' => 'shi', 'SMO111G0012' => 'smo', 'SMO228G0080' => 'smo', 'SMO356G0756' => 'smo', 'Solyc02g080620.3' => 'sly', 'Solyc06g074530.1' => 'sly', 'Solyc11g066890.1' => 'sly', 'Solyc11g072520.3' => 'sly', 'Sopen02g025330' => 'spe', 'Sopen06g031000' => 'spe', 'Sopen09g008240' => 'spe', 'Sopen09g025210' => 'spe', 'Sopen11g026600' => 'spe', 'Sopen11g030170' => 'spe', 'Sp1g10420' => 'spa', 'Sp3g06570' => 'spa', 'Sp4g10660' => 'spa', 'Sp5g16460' => 'spa', 'Sp6g22710' => 'spa', 'TAR365G0112' => 'tar', 'TAR369G0717' => 'tar', 'TAR374G0976' => 'tar', 'TAR623G1128' => 'tar', 'TAR626G1937' => 'tar', 'TAR627G0123' => 'tar', 'TAR628G0305' => 'tar', 'TAR636G1176' => 'tar', 'TAR636G2442' => 'tar', 'THA.LOC104800556' => 'tha', 'THA.LOC104809501' => 'tha', 'THA.LOC104815126' => 'tha', 'THA.LOC104815732' => 'tha', 'THA.LOC104823528' => 'tha', 'Thecc.02G365600' => 'tca', 'Thecc.06G222300' => 'tca', 'Thecc.09G261800' => 'tca', 'Thecc.09G291400' => 'tca', 'Thhalv10003028m.g' => 'esa', 'Thhalv10007886m.g' => 'esa', 'Thhalv10016085m.g' => 'esa', 'Thhalv10016681m.g' => 'esa', 'Thhalv10020951m.g' => 'esa', 'TPR.G15598' => 'tpr', 'TPR.G29305' => 'tpr', 'TPR.G32395' => 'tpr', 'TPR.G36998' => 'tpr', 'TPR.G4227' => 'tpr', 'TWI18G1433' => 'twi', 'TWI31G0755' => 'twi', 'TWI38G0912' => 'twi', 'TWI75G1097' => 'twi', 'TWI75G1619' => 'twi', 'TWI79G1336' => 'twi', 'unitig_0.g943' => 'ugi', 'unitig_0.g944' => 'ugi', 'unitig_22.g6646' => 'ugi', 'unitig_37.g12681' => 'ugi', 'unitig_8.g3290' => 'ugi', 'vmacro03278' => 'vma', 'vmacro12197' => 'vma', 'vmacro14478' => 'vma', 'vmacro15787' => 'vma', 'vmacro15789' => 'vma', 'vmacro15790' => 'vma', 'vmacro15806' => 'vma', 'vmacro22907' => 'vma', 'vmacro22908' => 'vma', 'vmacro22909' => 'vma', 'vmacro23108' => 'vma', 'VMungo0540G0540' => 'vmu', 'VMungo0540G2468' => 'vmu', 'VMungo1080G0390' => 'vmu', 'VMungo1080G1165' => 'vmu', 'VMungo1127G0170' => 'vmu', 'VMungo1127G2099' => 'vmu', 'VMungo1215G3013' => 'vmu', 'Zm00001eb013110' => 'zma', 'Zm00001eb084260' => 'zma', 'Zm00001eb096110' => 'zma', 'Zm00001eb217510' => 'zma', 'Zm00001eb322550' => 'zma', 'Zm00001eb390770' => 'zma', 'Zm00001eb397170' => 'zma', 'Zm00001eb404610' => 'zma', 'Zm00001eb421790' => 'zma' ), 'gf_id' => 'HOM05D000911', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000911' ), 'data_identifier' => 'HOM05D000911', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000911', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27780' => 'bna', 'A03p35380' => 'bna', 'A04p21160' => 'bna', 'A05p40570' => 'bna', 'A06p26900' => 'bna', 'A08p33230' => 'bna', 'A09p65960' => 'bna', 'A10p18290' => 'bna', 'Aa31LG1G12990' => 'aar', 'Aa31LG1G2980' => 'aar', 'Aa31LG4G14320' => 'aar', 'Aa31LG7G11800' => 'aar', 'Aa31sc36G50' => 'aar', 'Aa31sc36G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3721' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5459' => 'aag', 'Actinidia03028' => 'ach', 'Actinidia03753' => 'ach', 'Actinidia04187' => 'ach', 'Actinidia05509' => 'ach', 'Actinidia24180' => 'ach', 'Actinidia26906' => 'ach', 'Actinidia37097' => 'ach', 'Actinidia38249' => 'ach', 'Ah.01g003470' => 'amhyb', 'Ah.01g004580' => 'amhyb', 'Ah.01g014850' => 'amhyb', 'Ah.01g016830' => 'amhyb', 'Ah.14g088000' => 'amhyb', 'AL1G22980' => 'aly', 'AL3G18990' => 'aly', 'AL4G22440' => 'aly', 'AL4G33180' => 'aly', 'AL5G22920' => 'aly', 'AL6G33660' => 'aly', 'AL8G20720' => 'aly', 'Aqoxy1G00935' => 'aox', 'Aqoxy1G02094' => 'aox', 'Aqoxy2G01239' => 'aox', 'Aqoxy4G01870' => 'aox', 'Aqoxy7G00450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.36ZVTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71EM27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5D6C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH3WRE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3NCM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RIM768' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YB5YRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z36GDV' => 'arhy', 'AT1G08250' => 'ath', 'AT1G11790' => 'ath', 'AT2G27820' => 'ath', 'AT3G07630' => 'ath', 'AT3G44720' => 'ath', 'AT5G22630' => 'ath', 'ATR0693G304' => 'atr', 'ATR0794G109' => 'atr', 'ATR0820G120' => 'atr', 'ATR1159G064' => 'atr', 'Atru.chr10.2239' => 'acertr', 'Atru.chr3.3371' => 'acertr', 'Atru.chr6.3202' => 'acertr', 'AUR62006499' => 'cqu', 'AUR62012718' => 'cqu', 'AUR62021938' => 'cqu', 'AUR62023932' => 'cqu', 'AUR62025034' => 'cqu', 'AUR62025035' => 'cqu', 'AUR62038307' => 'cqu', 'AUR62043466' => 'cqu', 'BcaB02g10748' => 'bca', 'BcaB03g13231' => 'bca', 'BcaB03g14689' => 'bca', 'BcaB05g22716' => 'bca', 'BcaB06g28172' => 'bca', 'BcaB08g36413' => 'bca', 'BcaC01g02186' => 'bca', 'BcaC01g04272' => 'bca', 'BcaC02g08080' => 'bca', 'BcaC02g08227' => 'bca', 'BcaC03g13901' => 'bca', 'BcaC04g19593' => 'bca', 'BcaC04g20874' => 'bca', 'BcaC05g29557' => 'bca', 'BcaC06g35505' => 'bca', 'BcaC07g41954' => 'bca', 'BcaC07g41955' => 'bca', 'BcaC07g41956' => 'bca', 'BcaC07g42519' => 'bca', 'BcaC07g42520' => 'bca', 'BcaC07g42523' => 'bca', 'BcaC07g42524' => 'bca', 'BcaC07g42525' => 'bca', 'BcaC08g47480' => 'bca', 'BcaC08g47481' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00530' => 'bna', 'BolC2t07178H' => 'bol', 'BolC3t16567H' => 'bol', 'BolC4t27234H' => 'bol', 'BolC5t29728H' => 'bol', 'BolC5t34622H' => 'bol', 'BolC6t40321H' => 'bol', 'BolC7t42028H' => 'bol', 'BolC8t49125H' => 'bol', 'BolC8t52538H' => 'bol', 'BolC8t52539H' => 'bol', 'BolC9t56681H' => 'bol', 'BolC9t58266H' => 'bol', 'BolSC21t60294H' => 'bol', 'BraA02t05670Z' => 'bra', 'BraA03t12716Z' => 'bra', 'BraA04t17685Z' => 'bra', 'BraA05t22788Z' => 'bra', 'BraA06t24032Z' => 'bra', 'BraA06t25625Z' => 'bra', 'BraA07t27930Z' => 'bra', 'BraA08t35242Z' => 'bra', 'BraA09t38609Z' => 'bra', 'BraA10t43905Z' => 'bra', 'C02p11060' => 'bna', 'C03p42990' => 'bna', 'C03p67310' => 'bna', 'C04p56990' => 'bna', 'C04p58660' => 'bna', 'C05p09890' => 'bna', 'C05p59680' => 'bna', 'C06p19830' => 'bna', 'C06p53040' => 'bna', 'C07p15230' => 'bna', 'C08p50070' => 'bna', 'C08p50090' => 'bna', 'C09p38330' => 'bna', 'C09p53940' => 'bna', 'CAN.G1014.1' => 'can', 'CAN.G644.30' => 'can', 'CAN.G84.47' => 'can', 'CAN.G919.8' => 'can', 'CANSAT54G0113' => 'cansat', 'CANSAT54G1286' => 'cansat', 'CANSAT64G1020' => 'cansat', 'CARHR008080' => 'chi', 'CARHR008090' => 'chi', 'CARHR012130' => 'chi', 'CARHR038390' => 'chi', 'CARHR082330' => 'chi', 'CARHR120520' => 'chi', 'CARHR151470' => 'chi', 'CARHR190950' => 'chi', 'Carub.0001s0760' => 'cru', 'Carub.0001s1146' => 'cru', 'Carub.0003s0721' => 'cru', 'Carub.0004s0858' => 'cru', 'Carub.0005s1040' => 'cru', 'Carub.0006s2035' => 'cru', 'Carub.0015s0005' => 'cru', 'Ca_01607_v3' => 'car', 'Ca_01677_v3' => 'car', 'Ca_06087_v3' => 'car', 'Ca_19238_v3' => 'car', 'Ca_19373_v3' => 'car', 'Ca_21079_v3' => 'car', 'CBR_g54016' => 'cbr', 'CBR_g54018' => 'cbr', 'CBR_g54020' => 'cbr', 'Cc01_g09780' => 'ccan', 'Cc01_g11680' => 'ccan', 'Cc02_g15610' => 'ccan', 'Cc05_g04350' => 'ccan', 'Cc09_g01580' => 'ccan', 'CDE01G0795' => 'cde', 'CDE02G2024' => 'cde', 'CDE02G2260' => 'cde', 'CDE02G4561' => 'cde', 'CDE05G2733' => 'cde', 'CDE05G3422' => 'cde', 'CDE06G2003' => 'cde', 'CDE08G0576' => 'cde', 'CDE09G0048' => 'cde', 'CDE11G0805' => 'cde', 'Cfa003644' => 'cfa', 'Cfa006290' => 'cfa', 'Cfa010080' => 'cfa', 'Cfa011376' => 'cfa', 'Cfa011576' => 'cfa', 'Cfa011577' => 'cfa', 'Cfa014389' => 'cfa', 'Ciclev10006044m.g' => 'ccl', 'Ciclev10006954m.g' => 'ccl', 'Ciclev10015131m.g' => 'ccl', 'Ciclev10015580m.g' => 'ccl', 'Ciclev10028359m.g' => 'ccl', 'Ciclev10028573m.g' => 'ccl', 'CiPaw.03G159300' => 'cil', 'CiPaw.04G115100' => 'cil', 'CiPaw.09G092800' => 'cil', 'CiPaw.10G071800' => 'cil', 'CiPaw.13G105800' => 'cil', 'CiPaw.13G141000' => 'cil', 'CiPaw.14G103400' => 'cil', 'ClCG01G012700' => 'cla', 'ClCG01G012720' => 'cla', 'ClCG01G021920' => 'cla', 'ClCG02G008870' => 'cla', 'ClCG02G020840' => 'cla', 'ClCG02G021930' => 'cla', 'COL.COLO4_19302' => 'col', 'COL.COLO4_25262' => 'col', 'COL.COLO4_31788' => 'col', 'Cpa.g.c34684' => 'cpa', 'Cpa.g.c36520.1' => 'cpa', 'Cpa.g.c45626' => 'cpa', 'Cpa.g.sc121.17' => 'cpa', 'Cpa.g.sc13.22' => 'cpa', 'Cpa.g.sc87.88' => 'cpa', 'Cre06.g261800' => 'cre', 'CsaV3_1G014500' => 'csa', 'CsaV3_1G014510' => 'csa', 'CsaV3_2G034880' => 'csa', 'CsaV3_6G014760' => 'csa', 'CsaV3_6G021500' => 'csa', 'CsaV3_6G048980' => 'csa', 'CSS0002511' => 'camsi', 'CSS0007556' => 'camsi', 'CSS0008532' => 'camsi', 'CSS0009709' => 'camsi', 'CSS0010486' => 'camsi', 'CSS0016768' => 'camsi', 'CSS0023512' => 'camsi', 'CSS0025341' => 'camsi', 'CSS0027999' => 'camsi', 'CSS0028944' => 'camsi', 'CSS0032292' => 'camsi', 'CSS0032464' => 'camsi', 'CSS0037153' => 'camsi', 'CSS0039256' => 'camsi', 'CSS0048392' => 'camsi', 'CSS0050458' => 'camsi', 'DCAR_004224' => 'dca', 'DCAR_006147' => 'dca', 'DCAR_006465' => 'dca', 'DCAR_008159' => 'dca', 'DCAR_012164' => 'dca', 'DCAR_019764' => 'dca', 'Dinv05418' => 'din', 'Dinv10839' => 'din', 'Dinv12521' => 'din', 'Dinv13900' => 'din', 'Dinv29426' => 'din', 'Duzib150G0263' => 'dzi', 'Duzib168G1178' => 'dzi', 'Duzib168G1924' => 'dzi', 'Duzib170G0299' => 'dzi', 'Duzib170G0813' => 'dzi', 'Duzib235G1128' => 'dzi', 'Duzib248G1060' => 'dzi', 'ECA232G1910' => 'eca', 'ECA233G4621' => 'eca', 'ECA238G1216' => 'eca', 'ECA238G1784' => 'eca', 'ECA248G1242' => 'eca', 'EL10Ac8g20071' => 'bvu', 'EL10Ac9g21086' => 'bvu', 'EL10Ac9g22407' => 'bvu', 'EL10Ac9g22412' => 'bvu', 'Eucgr.A01119' => 'egr', 'Eucgr.E04043' => 'egr', 'Eucgr.J00428' => 'egr', 'Eucgr.J00958' => 'egr', 'FAN11G3091' => 'fan', 'FAN11G3651' => 'fan', 'FAN16G2566' => 'fan', 'FAN21G3155' => 'fan', 'FAN21G3400' => 'fan', 'FAN21G3543' => 'fan', 'FAN25G0234' => 'fan', 'FAN25G1422' => 'fan', 'FAN25G3392' => 'fan', 'FvH4_3g01940' => 'fve', 'FvH4_3g29870' => 'fve', 'FvH4_3g33680' => 'fve', 'Glyma.09G004200' => 'gma', 'Glyma.11G151288' => 'gma', 'Glyma.11G189100' => 'gma', 'Glyma.12G072500' => 'gma', 'Glyma.12G085500' => 'gma', 'Glyma.12G181800' => 'gma', 'Glyma.12G193000' => 'gma', 'Glyma.13G309300' => 'gma', 'Glyma.13G319000' => 'gma', 'Glyma.17G012600' => 'gma', 'Gohir.A06G148600' => 'ghi', 'Gohir.A07G115800' => 'ghi', 'Gohir.A08G003600' => 'ghi', 'Gohir.A09G093300' => 'ghi', 'Gohir.A09G105400' => 'ghi', 'Gohir.A09G105500' => 'ghi', 'Gohir.D06G154600' => 'ghi', 'Gohir.D07G120200' => 'ghi', 'Gohir.D08G013900' => 'ghi', 'Gohir.D09G093100' => 'ghi', 'Gohir.D09G102200' => 'ghi', 'Gohir.D09G102300' => 'ghi', 'Gorai.001G129400' => 'gra', 'Gorai.004G008200' => 'gra', 'Gorai.006G109800' => 'gra', 'Gorai.006G119500' => 'gra', 'Gorai.006G121300' => 'gra', 'Gorai.010G180700' => 'gra', 'GSVIVG01012716001' => 'vvi', 'GSVIVG01025118001' => 'vvi', 'GSVIVG01030439001' => 'vvi', 'GSVIVG01031397001' => 'vvi', 'HanXRQChr01g0004201' => 'han', 'HanXRQChr02g0054941' => 'han', 'HanXRQChr05g0141811' => 'han', 'HanXRQChr07g0197751' => 'han', 'HanXRQChr11g0346691' => 'han', 'HanXRQChr13g0396971' => 'han', 'HanXRQChr14g0432951' => 'han', 'HanXRQChr14g0452001' => 'han', 'HanXRQChr15g0496681' => 'han', 'HanXRQChr17g0557491' => 'han', 'HanXRQChr17g0557501' => 'han', 'Haze_06809' => 'cav', 'Haze_12852' => 'cav', 'Haze_15850' => 'cav', 'Haze_23446' => 'cav', 'Haze_23942' => 'cav', 'Haze_23943' => 'cav', 'Hma1.2p1_0091F.1_g046450' => 'hma', 'Hma1.2p1_0128F.1_g059910' => 'hma', 'Hma1.2p1_0249F.1_g102260' => 'hma', 'Hma1.2p1_0453F.1_g156190' => 'hma', 'Hma1.2p1_0695F.1_g204380' => 'hma', 'Hma1.2p1_0749F.1_g212650' => 'hma', 'Hma1.2p1_2156F.1_g315420' => 'hma', 'Hma1.2p1_2686F.1_g326940' => 'hma', 'HPP92_006428' => 'vpl', 'HPP92_012069' => 'vpl', 'HPP92_014129' => 'vpl', 'HPP92_014133' => 'vpl', 'HPP92_017315' => 'vpl', 'HPP92_026445' => 'vpl', 'HPP92_026446' => 'vpl', 'Hund00774' => 'sun', 'Hund07682' => 'sun', 'Hund21413' => 'sun', 'Hund23462' => 'sun', 'Hund23463' => 'sun', 'Lalb_Chr03g0027911' => 'lal', 'Lalb_Chr13g0304271' => 'lal', 'Lalb_Chr19g0137471' => 'lal', 'Lalb_Chr22g0350651' => 'lal', 'Lalb_Chr24g0395151' => 'lal', 'Lj1A1231T40' => 'lonja', 'Lj1A221T48' => 'lonja', 'Lj1C924T12' => 'lonja', 'Lj2C993G6' => 'lonja', 'Lj3g0005790' => 'lja', 'Lj3g0015432' => 'lja', 'Lj3g0017722' => 'lja', 'Lj3g0018497' => 'lja', 'Lj4g0025071' => 'lja', 'Lsat_1_v5_gn_1_129680' => 'lsa', 'Lsat_1_v5_gn_2_25321' => 'lsa', 'Lsat_1_v5_gn_2_95461' => 'lsa', 'Lsat_1_v5_gn_4_159620' => 'lsa', 'Lsat_1_v5_gn_6_41301' => 'lsa', 'Lsat_1_v5_gn_6_74660' => 'lsa', 'Lsat_1_v5_gn_7_11520' => 'lsa', 'Lsat_1_v5_gn_9_67680' => 'lsa', 'Manes.04G008300' => 'mes', 'Manes.04G008400' => 'mes', 'Manes.04G026500' => 'mes', 'Manes.10G135300' => 'mes', 'Manes.11G157300' => 'mes', 'Manes.12G074000' => 'mes', 'Manes.16G006200' => 'mes', 'Manes.17G026400' => 'mes', 'Mapoly0024s0086' => 'mpo', 'Mapoly0024s0087' => 'mpo', 'Mapoly0071s0057' => 'mpo', 'Mapoly0204s0012' => 'mpo', 'MBI04_g37681_MAGBIO' => 'mbi', 'MBI05_g17779_MAGBIO' => 'mbi', 'MBI12_g31184_MAGBIO' => 'mbi', 'MBI17_g11083_MAGBIO' => 'mbi', 'MBI18_g03883_MAGBIO' => 'mbi', 'MBI18_g28940_MAGBIO' => 'mbi', 'MCO01G690' => 'mco', 'MD03G1109900' => 'mdo', 'MD03G1134800' => 'mdo', 'MD05G1348000' => 'mdo', 'MD10G1322400' => 'mdo', 'MD11G1123300' => 'mdo', 'MD11G1157600' => 'mdo', 'Medtr2g084875' => 'mtr', 'Medtr2g088130' => 'mtr', 'Medtr4g055310' => 'mtr', 'Medtr4g061070' => 'mtr', 'Medtr4g132250' => 'mtr', 'MELO3C004795.2' => 'cme', 'MELO3C004797.2' => 'cme', 'MELO3C007396.2' => 'cme', 'MELO3C019277.2' => 'cme', 'MELO3C021449.2' => 'cme', 'MELO3C025736.2' => 'cme', 'Migut.D02175' => 'egut', 'Migut.H01573' => 'egut', 'Migut.M01327' => 'egut', 'Migut.N02513' => 'egut', 'MSTRG.14638' => 'ama', 'MSTRG.18632' => 'ama', 'MSTRG.7203' => 'ama', 'Nitab4.5_0000533g0140' => 'nta', 'Nitab4.5_0000888g0150' => 'nta', 'Nitab4.5_0001453g0040' => 'nta', 'Nitab4.5_0002827g0090' => 'nta', 'Nitab4.5_0003082g0040' => 'nta', 'Nitab4.5_0007799g0040' => 'nta', 'Nitab4.5_0008983g0010' => 'nta', 'Nitab4.5_0009017g0020' => 'nta', 'Nn1g02132' => 'nnu', 'Nn1g03492' => 'nnu', 'Nn1g03493' => 'nnu', 'Nn1g03494' => 'nnu', 'Nn1g07164' => 'nnu', 'Nn1g07291' => 'nnu', 'Nn2g10655' => 'nnu', 'Nn2g11652' => 'nnu', 'Nn2g14008' => 'nnu', 'Nn3g17476' => 'nnu', 'Nn3g17477' => 'nnu', 'Nn4g22370' => 'nnu', 'Nn4g25255' => 'nnu', 'Nn5g27755' => 'nnu', 'Nn6g34260' => 'nnu', 'Nn6g35041' => 'nnu', 'Oeu005924.1' => 'oeu', 'Oeu008383.1' => 'oeu', 'Oeu014928.1' => 'oeu', 'Oeu019889.1' => 'oeu', 'Oeu022271.1' => 'oeu', 'Oeu025271.1' => 'oeu', 'Oeu036302.1' => 'oeu', 'Oeu044100.1' => 'oeu', 'Os01g0528300' => 'osa', 'Os03g0286200' => 'osa', 'Os04g0406600' => 'osa', 'Os07g0512000' => 'osa', 'Os07g0694600' => 'osa', 'Os08g0411000' => 'osa', 'Os09g0565700' => 'osa', 'Os09g0566050' => 'osa', 'Os10g0523700' => 'osa', 'Peaxi162Scf00002g00514' => 'pax', 'Peaxi162Scf00047g01817' => 'pax', 'Peaxi162Scf00114g00001' => 'pax', 'Peaxi162Scf00147g00613' => 'pax', 'Peaxi162Scf00389g00425' => 'pax', 'PGR042G1139' => 'pgr', 'PGR042G3273' => 'pgr', 'PGR102G2180' => 'pgr', 'PGR119G0234' => 'pgr', 'PGR119G0668' => 'pgr', 'PGSC0003DMG400007122' => 'stu', 'PGSC0003DMG400016478' => 'stu', 'PGSC0003DMG400025374' => 'stu', 'PGSC0003DMG400026536' => 'stu', 'Phvul.003G079600' => 'pvu', 'Phvul.005G115600' => 'pvu', 'Phvul.005G127100' => 'pvu', 'Phvul.006G149500' => 'pvu', 'Phvul.006G149600' => 'pvu', 'Phvul.011G071800' => 'pvu', 'Phvul.011G090400' => 'pvu', 'Potri.004G013400' => 'ptr', 'Potri.004G188100' => 'ptr', 'Potri.008G195500' => 'ptr', 'Potri.009G148800' => 'ptr', 'Potri.011G004700' => 'ptr', 'Pp3c17_22810' => 'ppa', 'Pp3c18_4480' => 'ppa', 'Pp3c19_13030' => 'ppa', 'Pp3c1_33620' => 'ppa', 'Pp3c2_9380' => 'ppa', 'PRCOL_00001023' => 'pco', 'Prupe.3G216300' => 'ppe', 'Prupe.4G019500' => 'ppe', 'Prupe.6G092500' => 'ppe', 'Prupe.6G119200' => 'ppe', 'Psat0s1945g0080' => 'psa', 'Psat0s4167g0040' => 'psa', 'Psat1g185800' => 'psa', 'Psat4g006440' => 'psa', 'Psat4g006480' => 'psa', 'Psat4g168120' => 'psa', 'Psat5g255680' => 'psa', 'Psat5g261760' => 'psa', 'Psat7g222120' => 'psa', 'PSO063G7252' => 'pso', 'PSO170G4778' => 'pso', 'PSO210G2249' => 'pso', 'PSO339G2411' => 'pso', 'PSO339G2457' => 'pso', 'PSO339G2854' => 'pso', 'PSO339G4288' => 'pso', 'PSO339G4615' => 'pso', 'PSO384G2796' => 'pso', 'PSO384G2940' => 'pso', 'PSO384G4227' => 'pso', 'PSO478G1425' => 'pso', 'PSO541G3863' => 'pso', 'PSO675G0507' => 'pso', 'PSO782G0338' => 'pso', 'PSO832G0644' => 'pso', 'QL01p013664' => 'qlo', 'QL01p036598' => 'qlo', 'QL05p072984' => 'qlo', 'QL08p005768' => 'qlo', 'QL08p032743' => 'qlo', 'QL93p0073_0439' => 'qlo', 'QL93p0073_0444' => 'qlo', 'RcHm_v2.0_Chr5g0002851' => 'rch', 'RcHm_v2.0_Chr5g0055201' => 'rch', 'RcHm_v2.0_Chr5g0061191' => 'rch', 'RcHm_v2.0_Chr7g0203231' => 'rch', 'Rhsim01G0208100' => 'rsi', 'Rhsim01G0208200' => 'rsi', 'Rhsim02G0106500' => 'rsi', 'Rhsim03G0107900' => 'rsi', 'Rhsim06G0163400' => 'rsi', 'Rhsim13G0105200' => 'rsi', 'Sabra04G0006300' => 'sbr', 'Sabra04G0127000' => 'sbr', 'Sabra08G0148700' => 'sbr', 'Sabra09G0117400' => 'sbr', 'SalBow1G3326' => 'sbo', 'SalBow3G3228' => 'sbo', 'SalBow6G1634' => 'sbo', 'SalBow6G3603' => 'sbo', 'SalBow6G5266' => 'sbo', 'SalBow7G2265' => 'sbo', 'SalBow8G0850' => 'sbo', 'SalBow8G2592' => 'sbo', 'Sc05g0009240' => 'sci', 'Sc12g0002300' => 'sci', 'Sc21g0000100' => 'sci', 'Sc21g0004720' => 'sci', 'Sed0002949' => 'sed', 'Sed0004114' => 'sed', 'Sed0004306' => 'sed', 'Sed0006172' => 'sed', 'Sed0008413' => 'sed', 'Sed0013809' => 'sed', 'Sed0019556' => 'sed', 'SEGI_03570' => 'sgi', 'SEGI_07859' => 'sgi', 'SEGI_15042' => 'sgi', 'SEGI_16263' => 'sgi', 'SEGI_16552' => 'sgi', 'SEGI_24331' => 'sgi', 'SEGI_27316' => 'sgi', 'SEGI_29521' => 'sgi', 'SEGI_41342' => 'sgi', 'SGA_v2.0_scaffold27G11617' => 'sas', 'SGA_v2.0_scaffold316G48428' => 'sas', 'SGA_v2.0_scaffold49G18261' => 'sas', 'SGA_v2.0_scaffold7G03831' => 'sas', 'SGA_v2.0_scaffold93G28359' => 'sas', 'SHI02210' => 'shi', 'SHI06028' => 'shi', 'SHI06321' => 'shi', 'SMO111G0012' => 'smo', 'SMO228G0080' => 'smo', 'SMO356G0756' => 'smo', 'Solyc02g080620.3' => 'sly', 'Solyc06g074530.1' => 'sly', 'Solyc11g066890.1' => 'sly', 'Solyc11g072520.3' => 'sly', 'Sopen02g025330' => 'spe', 'Sopen06g031000' => 'spe', 'Sopen09g008240' => 'spe', 'Sopen09g025210' => 'spe', 'Sopen11g026600' => 'spe', 'Sopen11g030170' => 'spe', 'Sp1g10420' => 'spa', 'Sp3g06570' => 'spa', 'Sp4g10660' => 'spa', 'Sp5g16460' => 'spa', 'Sp6g22710' => 'spa', 'TAR365G0112' => 'tar', 'TAR369G0717' => 'tar', 'TAR374G0976' => 'tar', 'TAR623G1128' => 'tar', 'TAR626G1937' => 'tar', 'TAR627G0123' => 'tar', 'TAR628G0305' => 'tar', 'TAR636G1176' => 'tar', 'TAR636G2442' => 'tar', 'THA.LOC104800556' => 'tha', 'THA.LOC104809501' => 'tha', 'THA.LOC104815126' => 'tha', 'THA.LOC104815732' => 'tha', 'THA.LOC104823528' => 'tha', 'Thecc.02G365600' => 'tca', 'Thecc.06G222300' => 'tca', 'Thecc.09G261800' => 'tca', 'Thecc.09G291400' => 'tca', 'Thhalv10003028m.g' => 'esa', 'Thhalv10007886m.g' => 'esa', 'Thhalv10016085m.g' => 'esa', 'Thhalv10016681m.g' => 'esa', 'Thhalv10020951m.g' => 'esa', 'TPR.G15598' => 'tpr', 'TPR.G29305' => 'tpr', 'TPR.G32395' => 'tpr', 'TPR.G36998' => 'tpr', 'TPR.G4227' => 'tpr', 'TWI18G1433' => 'twi', 'TWI31G0755' => 'twi', 'TWI38G0912' => 'twi', 'TWI75G1097' => 'twi', 'TWI75G1619' => 'twi', 'TWI79G1336' => 'twi', 'unitig_0.g943' => 'ugi', 'unitig_0.g944' => 'ugi', 'unitig_22.g6646' => 'ugi', 'unitig_37.g12681' => 'ugi', 'unitig_8.g3290' => 'ugi', 'vmacro03278' => 'vma', 'vmacro12197' => 'vma', 'vmacro14478' => 'vma', 'vmacro15787' => 'vma', 'vmacro15789' => 'vma', 'vmacro15790' => 'vma', 'vmacro15806' => 'vma', 'vmacro22907' => 'vma', 'vmacro22908' => 'vma', 'vmacro22909' => 'vma', 'vmacro23108' => 'vma', 'VMungo0540G0540' => 'vmu', 'VMungo0540G2468' => 'vmu', 'VMungo1080G0390' => 'vmu', 'VMungo1080G1165' => 'vmu', 'VMungo1127G0170' => 'vmu', 'VMungo1127G2099' => 'vmu', 'VMungo1215G3013' => 'vmu', 'Zm00001eb013110' => 'zma', 'Zm00001eb084260' => 'zma', 'Zm00001eb096110' => 'zma', 'Zm00001eb217510' => 'zma', 'Zm00001eb322550' => 'zma', 'Zm00001eb390770' => 'zma', 'Zm00001eb397170' => 'zma', 'Zm00001eb404610' => 'zma', 'Zm00001eb421790' => 'zma' ) $gf_id = 'HOM05D000911' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000911' ) $data_identifier = 'HOM05D000911' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 16, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 5, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 6, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 8, 'nnu' => (int) 16, 'oeu' => (int) 8, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 5, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 16, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421790' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000911', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27780' => 'bna', 'A03p35380' => 'bna', 'A04p21160' => 'bna', 'A05p40570' => 'bna', 'A06p26900' => 'bna', 'A08p33230' => 'bna', 'A09p65960' => 'bna', 'A10p18290' => 'bna', 'Aa31LG1G12990' => 'aar', 'Aa31LG1G2980' => 'aar', 'Aa31LG4G14320' => 'aar', 'Aa31LG7G11800' => 'aar', 'Aa31sc36G50' => 'aar', 'Aa31sc36G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3721' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5459' => 'aag', 'Actinidia03028' => 'ach', 'Actinidia03753' => 'ach', 'Actinidia04187' => 'ach', 'Actinidia05509' => 'ach', 'Actinidia24180' => 'ach', 'Actinidia26906' => 'ach', 'Actinidia37097' => 'ach', 'Actinidia38249' => 'ach', 'Ah.01g003470' => 'amhyb', 'Ah.01g004580' => 'amhyb', 'Ah.01g014850' => 'amhyb', 'Ah.01g016830' => 'amhyb', 'Ah.14g088000' => 'amhyb', 'AL1G22980' => 'aly', 'AL3G18990' => 'aly', 'AL4G22440' => 'aly', 'AL4G33180' => 'aly', 'AL5G22920' => 'aly', 'AL6G33660' => 'aly', 'AL8G20720' => 'aly', 'Aqoxy1G00935' => 'aox', 'Aqoxy1G02094' => 'aox', 'Aqoxy2G01239' => 'aox', 'Aqoxy4G01870' => 'aox', 'Aqoxy7G00450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.36ZVTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71EM27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5D6C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH3WRE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3NCM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RIM768' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YB5YRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z36GDV' => 'arhy', 'AT1G08250' => 'ath', 'AT1G11790' => 'ath', 'AT2G27820' => 'ath', 'AT3G07630' => 'ath', 'AT3G44720' => 'ath', 'AT5G22630' => 'ath', 'ATR0693G304' => 'atr', 'ATR0794G109' => 'atr', 'ATR0820G120' => 'atr', 'ATR1159G064' => 'atr', 'Atru.chr10.2239' => 'acertr', 'Atru.chr3.3371' => 'acertr', 'Atru.chr6.3202' => 'acertr', 'AUR62006499' => 'cqu', 'AUR62012718' => 'cqu', 'AUR62021938' => 'cqu', 'AUR62023932' => 'cqu', 'AUR62025034' => 'cqu', 'AUR62025035' => 'cqu', 'AUR62038307' => 'cqu', 'AUR62043466' => 'cqu', 'BcaB02g10748' => 'bca', 'BcaB03g13231' => 'bca', 'BcaB03g14689' => 'bca', 'BcaB05g22716' => 'bca', 'BcaB06g28172' => 'bca', 'BcaB08g36413' => 'bca', 'BcaC01g02186' => 'bca', 'BcaC01g04272' => 'bca', 'BcaC02g08080' => 'bca', 'BcaC02g08227' => 'bca', 'BcaC03g13901' => 'bca', 'BcaC04g19593' => 'bca', 'BcaC04g20874' => 'bca', 'BcaC05g29557' => 'bca', 'BcaC06g35505' => 'bca', 'BcaC07g41954' => 'bca', 'BcaC07g41955' => 'bca', 'BcaC07g41956' => 'bca', 'BcaC07g42519' => 'bca', 'BcaC07g42520' => 'bca', 'BcaC07g42523' => 'bca', 'BcaC07g42524' => 'bca', 'BcaC07g42525' => 'bca', 'BcaC08g47480' => 'bca', 'BcaC08g47481' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00530' => 'bna', 'BolC2t07178H' => 'bol', 'BolC3t16567H' => 'bol', 'BolC4t27234H' => 'bol', 'BolC5t29728H' => 'bol', 'BolC5t34622H' => 'bol', 'BolC6t40321H' => 'bol', 'BolC7t42028H' => 'bol', 'BolC8t49125H' => 'bol', 'BolC8t52538H' => 'bol', 'BolC8t52539H' => 'bol', 'BolC9t56681H' => 'bol', 'BolC9t58266H' => 'bol', 'BolSC21t60294H' => 'bol', 'BraA02t05670Z' => 'bra', 'BraA03t12716Z' => 'bra', 'BraA04t17685Z' => 'bra', 'BraA05t22788Z' => 'bra', 'BraA06t24032Z' => 'bra', 'BraA06t25625Z' => 'bra', 'BraA07t27930Z' => 'bra', 'BraA08t35242Z' => 'bra', 'BraA09t38609Z' => 'bra', 'BraA10t43905Z' => 'bra', 'C02p11060' => 'bna', 'C03p42990' => 'bna', 'C03p67310' => 'bna', 'C04p56990' => 'bna', 'C04p58660' => 'bna', 'C05p09890' => 'bna', 'C05p59680' => 'bna', 'C06p19830' => 'bna', 'C06p53040' => 'bna', 'C07p15230' => 'bna', 'C08p50070' => 'bna', 'C08p50090' => 'bna', 'C09p38330' => 'bna', 'C09p53940' => 'bna', 'CAN.G1014.1' => 'can', 'CAN.G644.30' => 'can', 'CAN.G84.47' => 'can', 'CAN.G919.8' => 'can', 'CANSAT54G0113' => 'cansat', 'CANSAT54G1286' => 'cansat', 'CANSAT64G1020' => 'cansat', 'CARHR008080' => 'chi', 'CARHR008090' => 'chi', 'CARHR012130' => 'chi', 'CARHR038390' => 'chi', 'CARHR082330' => 'chi', 'CARHR120520' => 'chi', 'CARHR151470' => 'chi', 'CARHR190950' => 'chi', 'Carub.0001s0760' => 'cru', 'Carub.0001s1146' => 'cru', 'Carub.0003s0721' => 'cru', 'Carub.0004s0858' => 'cru', 'Carub.0005s1040' => 'cru', 'Carub.0006s2035' => 'cru', 'Carub.0015s0005' => 'cru', 'Ca_01607_v3' => 'car', 'Ca_01677_v3' => 'car', 'Ca_06087_v3' => 'car', 'Ca_19238_v3' => 'car', 'Ca_19373_v3' => 'car', 'Ca_21079_v3' => 'car', 'CBR_g54016' => 'cbr', 'CBR_g54018' => 'cbr', 'CBR_g54020' => 'cbr', 'Cc01_g09780' => 'ccan', 'Cc01_g11680' => 'ccan', 'Cc02_g15610' => 'ccan', 'Cc05_g04350' => 'ccan', 'Cc09_g01580' => 'ccan', 'CDE01G0795' => 'cde', 'CDE02G2024' => 'cde', 'CDE02G2260' => 'cde', 'CDE02G4561' => 'cde', 'CDE05G2733' => 'cde', 'CDE05G3422' => 'cde', 'CDE06G2003' => 'cde', 'CDE08G0576' => 'cde', 'CDE09G0048' => 'cde', 'CDE11G0805' => 'cde', 'Cfa003644' => 'cfa', 'Cfa006290' => 'cfa', 'Cfa010080' => 'cfa', 'Cfa011376' => 'cfa', 'Cfa011576' => 'cfa', 'Cfa011577' => 'cfa', 'Cfa014389' => 'cfa', 'Ciclev10006044m.g' => 'ccl', 'Ciclev10006954m.g' => 'ccl', 'Ciclev10015131m.g' => 'ccl', 'Ciclev10015580m.g' => 'ccl', 'Ciclev10028359m.g' => 'ccl', 'Ciclev10028573m.g' => 'ccl', 'CiPaw.03G159300' => 'cil', 'CiPaw.04G115100' => 'cil', 'CiPaw.09G092800' => 'cil', 'CiPaw.10G071800' => 'cil', 'CiPaw.13G105800' => 'cil', 'CiPaw.13G141000' => 'cil', 'CiPaw.14G103400' => 'cil', 'ClCG01G012700' => 'cla', 'ClCG01G012720' => 'cla', 'ClCG01G021920' => 'cla', 'ClCG02G008870' => 'cla', 'ClCG02G020840' => 'cla', 'ClCG02G021930' => 'cla', 'COL.COLO4_19302' => 'col', 'COL.COLO4_25262' => 'col', 'COL.COLO4_31788' => 'col', 'Cpa.g.c34684' => 'cpa', 'Cpa.g.c36520.1' => 'cpa', 'Cpa.g.c45626' => 'cpa', 'Cpa.g.sc121.17' => 'cpa', 'Cpa.g.sc13.22' => 'cpa', 'Cpa.g.sc87.88' => 'cpa', 'Cre06.g261800' => 'cre', 'CsaV3_1G014500' => 'csa', 'CsaV3_1G014510' => 'csa', 'CsaV3_2G034880' => 'csa', 'CsaV3_6G014760' => 'csa', 'CsaV3_6G021500' => 'csa', 'CsaV3_6G048980' => 'csa', 'CSS0002511' => 'camsi', 'CSS0007556' => 'camsi', 'CSS0008532' => 'camsi', 'CSS0009709' => 'camsi', 'CSS0010486' => 'camsi', 'CSS0016768' => 'camsi', 'CSS0023512' => 'camsi', 'CSS0025341' => 'camsi', 'CSS0027999' => 'camsi', 'CSS0028944' => 'camsi', 'CSS0032292' => 'camsi', 'CSS0032464' => 'camsi', 'CSS0037153' => 'camsi', 'CSS0039256' => 'camsi', 'CSS0048392' => 'camsi', 'CSS0050458' => 'camsi', 'DCAR_004224' => 'dca', 'DCAR_006147' => 'dca', 'DCAR_006465' => 'dca', 'DCAR_008159' => 'dca', 'DCAR_012164' => 'dca', 'DCAR_019764' => 'dca', 'Dinv05418' => 'din', 'Dinv10839' => 'din', 'Dinv12521' => 'din', 'Dinv13900' => 'din', 'Dinv29426' => 'din', 'Duzib150G0263' => 'dzi', 'Duzib168G1178' => 'dzi', 'Duzib168G1924' => 'dzi', 'Duzib170G0299' => 'dzi', 'Duzib170G0813' => 'dzi', 'Duzib235G1128' => 'dzi', 'Duzib248G1060' => 'dzi', 'ECA232G1910' => 'eca', 'ECA233G4621' => 'eca', 'ECA238G1216' => 'eca', 'ECA238G1784' => 'eca', 'ECA248G1242' => 'eca', 'EL10Ac8g20071' => 'bvu', 'EL10Ac9g21086' => 'bvu', 'EL10Ac9g22407' => 'bvu', 'EL10Ac9g22412' => 'bvu', 'Eucgr.A01119' => 'egr', 'Eucgr.E04043' => 'egr', 'Eucgr.J00428' => 'egr', 'Eucgr.J00958' => 'egr', 'FAN11G3091' => 'fan', 'FAN11G3651' => 'fan', 'FAN16G2566' => 'fan', 'FAN21G3155' => 'fan', 'FAN21G3400' => 'fan', 'FAN21G3543' => 'fan', 'FAN25G0234' => 'fan', 'FAN25G1422' => 'fan', 'FAN25G3392' => 'fan', 'FvH4_3g01940' => 'fve', 'FvH4_3g29870' => 'fve', 'FvH4_3g33680' => 'fve', 'Glyma.09G004200' => 'gma', 'Glyma.11G151288' => 'gma', 'Glyma.11G189100' => 'gma', 'Glyma.12G072500' => 'gma', 'Glyma.12G085500' => 'gma', 'Glyma.12G181800' => 'gma', 'Glyma.12G193000' => 'gma', 'Glyma.13G309300' => 'gma', 'Glyma.13G319000' => 'gma', 'Glyma.17G012600' => 'gma', 'Gohir.A06G148600' => 'ghi', 'Gohir.A07G115800' => 'ghi', 'Gohir.A08G003600' => 'ghi', 'Gohir.A09G093300' => 'ghi', 'Gohir.A09G105400' => 'ghi', 'Gohir.A09G105500' => 'ghi', 'Gohir.D06G154600' => 'ghi', 'Gohir.D07G120200' => 'ghi', 'Gohir.D08G013900' => 'ghi', 'Gohir.D09G093100' => 'ghi', 'Gohir.D09G102200' => 'ghi', 'Gohir.D09G102300' => 'ghi', 'Gorai.001G129400' => 'gra', 'Gorai.004G008200' => 'gra', 'Gorai.006G109800' => 'gra', 'Gorai.006G119500' => 'gra', 'Gorai.006G121300' => 'gra', 'Gorai.010G180700' => 'gra', 'GSVIVG01012716001' => 'vvi', 'GSVIVG01025118001' => 'vvi', 'GSVIVG01030439001' => 'vvi', 'GSVIVG01031397001' => 'vvi', 'HanXRQChr01g0004201' => 'han', 'HanXRQChr02g0054941' => 'han', 'HanXRQChr05g0141811' => 'han', 'HanXRQChr07g0197751' => 'han', 'HanXRQChr11g0346691' => 'han', 'HanXRQChr13g0396971' => 'han', 'HanXRQChr14g0432951' => 'han', 'HanXRQChr14g0452001' => 'han', 'HanXRQChr15g0496681' => 'han', 'HanXRQChr17g0557491' => 'han', 'HanXRQChr17g0557501' => 'han', 'Haze_06809' => 'cav', 'Haze_12852' => 'cav', 'Haze_15850' => 'cav', 'Haze_23446' => 'cav', 'Haze_23942' => 'cav', 'Haze_23943' => 'cav', 'Hma1.2p1_0091F.1_g046450' => 'hma', 'Hma1.2p1_0128F.1_g059910' => 'hma', 'Hma1.2p1_0249F.1_g102260' => 'hma', 'Hma1.2p1_0453F.1_g156190' => 'hma', 'Hma1.2p1_0695F.1_g204380' => 'hma', 'Hma1.2p1_0749F.1_g212650' => 'hma', 'Hma1.2p1_2156F.1_g315420' => 'hma', 'Hma1.2p1_2686F.1_g326940' => 'hma', 'HPP92_006428' => 'vpl', 'HPP92_012069' => 'vpl', 'HPP92_014129' => 'vpl', 'HPP92_014133' => 'vpl', 'HPP92_017315' => 'vpl', 'HPP92_026445' => 'vpl', 'HPP92_026446' => 'vpl', 'Hund00774' => 'sun', 'Hund07682' => 'sun', 'Hund21413' => 'sun', 'Hund23462' => 'sun', 'Hund23463' => 'sun', 'Lalb_Chr03g0027911' => 'lal', 'Lalb_Chr13g0304271' => 'lal', 'Lalb_Chr19g0137471' => 'lal', 'Lalb_Chr22g0350651' => 'lal', 'Lalb_Chr24g0395151' => 'lal', 'Lj1A1231T40' => 'lonja', 'Lj1A221T48' => 'lonja', 'Lj1C924T12' => 'lonja', 'Lj2C993G6' => 'lonja', 'Lj3g0005790' => 'lja', 'Lj3g0015432' => 'lja', 'Lj3g0017722' => 'lja', 'Lj3g0018497' => 'lja', 'Lj4g0025071' => 'lja', 'Lsat_1_v5_gn_1_129680' => 'lsa', 'Lsat_1_v5_gn_2_25321' => 'lsa', 'Lsat_1_v5_gn_2_95461' => 'lsa', 'Lsat_1_v5_gn_4_159620' => 'lsa', 'Lsat_1_v5_gn_6_41301' => 'lsa', 'Lsat_1_v5_gn_6_74660' => 'lsa', 'Lsat_1_v5_gn_7_11520' => 'lsa', 'Lsat_1_v5_gn_9_67680' => 'lsa', 'Manes.04G008300' => 'mes', 'Manes.04G008400' => 'mes', 'Manes.04G026500' => 'mes', 'Manes.10G135300' => 'mes', 'Manes.11G157300' => 'mes', 'Manes.12G074000' => 'mes', 'Manes.16G006200' => 'mes', 'Manes.17G026400' => 'mes', 'Mapoly0024s0086' => 'mpo', 'Mapoly0024s0087' => 'mpo', 'Mapoly0071s0057' => 'mpo', 'Mapoly0204s0012' => 'mpo', 'MBI04_g37681_MAGBIO' => 'mbi', 'MBI05_g17779_MAGBIO' => 'mbi', 'MBI12_g31184_MAGBIO' => 'mbi', 'MBI17_g11083_MAGBIO' => 'mbi', 'MBI18_g03883_MAGBIO' => 'mbi', 'MBI18_g28940_MAGBIO' => 'mbi', 'MCO01G690' => 'mco', 'MD03G1109900' => 'mdo', 'MD03G1134800' => 'mdo', 'MD05G1348000' => 'mdo', 'MD10G1322400' => 'mdo', 'MD11G1123300' => 'mdo', 'MD11G1157600' => 'mdo', 'Medtr2g084875' => 'mtr', 'Medtr2g088130' => 'mtr', 'Medtr4g055310' => 'mtr', 'Medtr4g061070' => 'mtr', 'Medtr4g132250' => 'mtr', 'MELO3C004795.2' => 'cme', 'MELO3C004797.2' => 'cme', 'MELO3C007396.2' => 'cme', 'MELO3C019277.2' => 'cme', 'MELO3C021449.2' => 'cme', 'MELO3C025736.2' => 'cme', 'Migut.D02175' => 'egut', 'Migut.H01573' => 'egut', 'Migut.M01327' => 'egut', 'Migut.N02513' => 'egut', 'MSTRG.14638' => 'ama', 'MSTRG.18632' => 'ama', 'MSTRG.7203' => 'ama', 'Nitab4.5_0000533g0140' => 'nta', 'Nitab4.5_0000888g0150' => 'nta', 'Nitab4.5_0001453g0040' => 'nta', 'Nitab4.5_0002827g0090' => 'nta', 'Nitab4.5_0003082g0040' => 'nta', 'Nitab4.5_0007799g0040' => 'nta', 'Nitab4.5_0008983g0010' => 'nta', 'Nitab4.5_0009017g0020' => 'nta', 'Nn1g02132' => 'nnu', 'Nn1g03492' => 'nnu', 'Nn1g03493' => 'nnu', 'Nn1g03494' => 'nnu', 'Nn1g07164' => 'nnu', 'Nn1g07291' => 'nnu', 'Nn2g10655' => 'nnu', 'Nn2g11652' => 'nnu', 'Nn2g14008' => 'nnu', 'Nn3g17476' => 'nnu', 'Nn3g17477' => 'nnu', 'Nn4g22370' => 'nnu', 'Nn4g25255' => 'nnu', 'Nn5g27755' => 'nnu', 'Nn6g34260' => 'nnu', 'Nn6g35041' => 'nnu', 'Oeu005924.1' => 'oeu', 'Oeu008383.1' => 'oeu', 'Oeu014928.1' => 'oeu', 'Oeu019889.1' => 'oeu', 'Oeu022271.1' => 'oeu', 'Oeu025271.1' => 'oeu', 'Oeu036302.1' => 'oeu', 'Oeu044100.1' => 'oeu', 'Os01g0528300' => 'osa', 'Os03g0286200' => 'osa', 'Os04g0406600' => 'osa', 'Os07g0512000' => 'osa', 'Os07g0694600' => 'osa', 'Os08g0411000' => 'osa', 'Os09g0565700' => 'osa', 'Os09g0566050' => 'osa', 'Os10g0523700' => 'osa', 'Peaxi162Scf00002g00514' => 'pax', 'Peaxi162Scf00047g01817' => 'pax', 'Peaxi162Scf00114g00001' => 'pax', 'Peaxi162Scf00147g00613' => 'pax', 'Peaxi162Scf00389g00425' => 'pax', 'PGR042G1139' => 'pgr', 'PGR042G3273' => 'pgr', 'PGR102G2180' => 'pgr', 'PGR119G0234' => 'pgr', 'PGR119G0668' => 'pgr', 'PGSC0003DMG400007122' => 'stu', 'PGSC0003DMG400016478' => 'stu', 'PGSC0003DMG400025374' => 'stu', 'PGSC0003DMG400026536' => 'stu', 'Phvul.003G079600' => 'pvu', 'Phvul.005G115600' => 'pvu', 'Phvul.005G127100' => 'pvu', 'Phvul.006G149500' => 'pvu', 'Phvul.006G149600' => 'pvu', 'Phvul.011G071800' => 'pvu', 'Phvul.011G090400' => 'pvu', 'Potri.004G013400' => 'ptr', 'Potri.004G188100' => 'ptr', 'Potri.008G195500' => 'ptr', 'Potri.009G148800' => 'ptr', 'Potri.011G004700' => 'ptr', 'Pp3c17_22810' => 'ppa', 'Pp3c18_4480' => 'ppa', 'Pp3c19_13030' => 'ppa', 'Pp3c1_33620' => 'ppa', 'Pp3c2_9380' => 'ppa', 'PRCOL_00001023' => 'pco', 'Prupe.3G216300' => 'ppe', 'Prupe.4G019500' => 'ppe', 'Prupe.6G092500' => 'ppe', 'Prupe.6G119200' => 'ppe', 'Psat0s1945g0080' => 'psa', 'Psat0s4167g0040' => 'psa', 'Psat1g185800' => 'psa', 'Psat4g006440' => 'psa', 'Psat4g006480' => 'psa', 'Psat4g168120' => 'psa', 'Psat5g255680' => 'psa', 'Psat5g261760' => 'psa', 'Psat7g222120' => 'psa', 'PSO063G7252' => 'pso', 'PSO170G4778' => 'pso', 'PSO210G2249' => 'pso', 'PSO339G2411' => 'pso', 'PSO339G2457' => 'pso', 'PSO339G2854' => 'pso', 'PSO339G4288' => 'pso', 'PSO339G4615' => 'pso', 'PSO384G2796' => 'pso', 'PSO384G2940' => 'pso', 'PSO384G4227' => 'pso', 'PSO478G1425' => 'pso', 'PSO541G3863' => 'pso', 'PSO675G0507' => 'pso', 'PSO782G0338' => 'pso', 'PSO832G0644' => 'pso', 'QL01p013664' => 'qlo', 'QL01p036598' => 'qlo', 'QL05p072984' => 'qlo', 'QL08p005768' => 'qlo', 'QL08p032743' => 'qlo', 'QL93p0073_0439' => 'qlo', 'QL93p0073_0444' => 'qlo', 'RcHm_v2.0_Chr5g0002851' => 'rch', 'RcHm_v2.0_Chr5g0055201' => 'rch', 'RcHm_v2.0_Chr5g0061191' => 'rch', 'RcHm_v2.0_Chr7g0203231' => 'rch', 'Rhsim01G0208100' => 'rsi', 'Rhsim01G0208200' => 'rsi', 'Rhsim02G0106500' => 'rsi', 'Rhsim03G0107900' => 'rsi', 'Rhsim06G0163400' => 'rsi', 'Rhsim13G0105200' => 'rsi', 'Sabra04G0006300' => 'sbr', 'Sabra04G0127000' => 'sbr', 'Sabra08G0148700' => 'sbr', 'Sabra09G0117400' => 'sbr', 'SalBow1G3326' => 'sbo', 'SalBow3G3228' => 'sbo', 'SalBow6G1634' => 'sbo', 'SalBow6G3603' => 'sbo', 'SalBow6G5266' => 'sbo', 'SalBow7G2265' => 'sbo', 'SalBow8G0850' => 'sbo', 'SalBow8G2592' => 'sbo', 'Sc05g0009240' => 'sci', 'Sc12g0002300' => 'sci', 'Sc21g0000100' => 'sci', 'Sc21g0004720' => 'sci', 'Sed0002949' => 'sed', 'Sed0004114' => 'sed', 'Sed0004306' => 'sed', 'Sed0006172' => 'sed', 'Sed0008413' => 'sed', 'Sed0013809' => 'sed', 'Sed0019556' => 'sed', 'SEGI_03570' => 'sgi', 'SEGI_07859' => 'sgi', 'SEGI_15042' => 'sgi', 'SEGI_16263' => 'sgi', 'SEGI_16552' => 'sgi', 'SEGI_24331' => 'sgi', 'SEGI_27316' => 'sgi', 'SEGI_29521' => 'sgi', 'SEGI_41342' => 'sgi', 'SGA_v2.0_scaffold27G11617' => 'sas', 'SGA_v2.0_scaffold316G48428' => 'sas', 'SGA_v2.0_scaffold49G18261' => 'sas', 'SGA_v2.0_scaffold7G03831' => 'sas', 'SGA_v2.0_scaffold93G28359' => 'sas', 'SHI02210' => 'shi', 'SHI06028' => 'shi', 'SHI06321' => 'shi', 'SMO111G0012' => 'smo', 'SMO228G0080' => 'smo', 'SMO356G0756' => 'smo', 'Solyc02g080620.3' => 'sly', 'Solyc06g074530.1' => 'sly', 'Solyc11g066890.1' => 'sly', 'Solyc11g072520.3' => 'sly', 'Sopen02g025330' => 'spe', 'Sopen06g031000' => 'spe', 'Sopen09g008240' => 'spe', 'Sopen09g025210' => 'spe', 'Sopen11g026600' => 'spe', 'Sopen11g030170' => 'spe', 'Sp1g10420' => 'spa', 'Sp3g06570' => 'spa', 'Sp4g10660' => 'spa', 'Sp5g16460' => 'spa', 'Sp6g22710' => 'spa', 'TAR365G0112' => 'tar', 'TAR369G0717' => 'tar', 'TAR374G0976' => 'tar', 'TAR623G1128' => 'tar', 'TAR626G1937' => 'tar', 'TAR627G0123' => 'tar', 'TAR628G0305' => 'tar', 'TAR636G1176' => 'tar', 'TAR636G2442' => 'tar', 'THA.LOC104800556' => 'tha', 'THA.LOC104809501' => 'tha', 'THA.LOC104815126' => 'tha', 'THA.LOC104815732' => 'tha', 'THA.LOC104823528' => 'tha', 'Thecc.02G365600' => 'tca', 'Thecc.06G222300' => 'tca', 'Thecc.09G261800' => 'tca', 'Thecc.09G291400' => 'tca', 'Thhalv10003028m.g' => 'esa', 'Thhalv10007886m.g' => 'esa', 'Thhalv10016085m.g' => 'esa', 'Thhalv10016681m.g' => 'esa', 'Thhalv10020951m.g' => 'esa', 'TPR.G15598' => 'tpr', 'TPR.G29305' => 'tpr', 'TPR.G32395' => 'tpr', 'TPR.G36998' => 'tpr', 'TPR.G4227' => 'tpr', 'TWI18G1433' => 'twi', 'TWI31G0755' => 'twi', 'TWI38G0912' => 'twi', 'TWI75G1097' => 'twi', 'TWI75G1619' => 'twi', 'TWI79G1336' => 'twi', 'unitig_0.g943' => 'ugi', 'unitig_0.g944' => 'ugi', 'unitig_22.g6646' => 'ugi', 'unitig_37.g12681' => 'ugi', 'unitig_8.g3290' => 'ugi', 'vmacro03278' => 'vma', 'vmacro12197' => 'vma', 'vmacro14478' => 'vma', 'vmacro15787' => 'vma', 'vmacro15789' => 'vma', 'vmacro15790' => 'vma', 'vmacro15806' => 'vma', 'vmacro22907' => 'vma', 'vmacro22908' => 'vma', 'vmacro22909' => 'vma', 'vmacro23108' => 'vma', 'VMungo0540G0540' => 'vmu', 'VMungo0540G2468' => 'vmu', 'VMungo1080G0390' => 'vmu', 'VMungo1080G1165' => 'vmu', 'VMungo1127G0170' => 'vmu', 'VMungo1127G2099' => 'vmu', 'VMungo1215G3013' => 'vmu', 'Zm00001eb013110' => 'zma', 'Zm00001eb084260' => 'zma', 'Zm00001eb096110' => 'zma', 'Zm00001eb217510' => 'zma', 'Zm00001eb322550' => 'zma', 'Zm00001eb390770' => 'zma', 'Zm00001eb397170' => 'zma', 'Zm00001eb404610' => 'zma', 'Zm00001eb421790' => 'zma' ), 'gf_id' => 'HOM05D000911', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000911' ), 'data_identifier' => 'HOM05D000911', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000911', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27780' => 'bna', 'A03p35380' => 'bna', 'A04p21160' => 'bna', 'A05p40570' => 'bna', 'A06p26900' => 'bna', 'A08p33230' => 'bna', 'A09p65960' => 'bna', 'A10p18290' => 'bna', 'Aa31LG1G12990' => 'aar', 'Aa31LG1G2980' => 'aar', 'Aa31LG4G14320' => 'aar', 'Aa31LG7G11800' => 'aar', 'Aa31sc36G50' => 'aar', 'Aa31sc36G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3721' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5459' => 'aag', 'Actinidia03028' => 'ach', 'Actinidia03753' => 'ach', 'Actinidia04187' => 'ach', 'Actinidia05509' => 'ach', 'Actinidia24180' => 'ach', 'Actinidia26906' => 'ach', 'Actinidia37097' => 'ach', 'Actinidia38249' => 'ach', 'Ah.01g003470' => 'amhyb', 'Ah.01g004580' => 'amhyb', 'Ah.01g014850' => 'amhyb', 'Ah.01g016830' => 'amhyb', 'Ah.14g088000' => 'amhyb', 'AL1G22980' => 'aly', 'AL3G18990' => 'aly', 'AL4G22440' => 'aly', 'AL4G33180' => 'aly', 'AL5G22920' => 'aly', 'AL6G33660' => 'aly', 'AL8G20720' => 'aly', 'Aqoxy1G00935' => 'aox', 'Aqoxy1G02094' => 'aox', 'Aqoxy2G01239' => 'aox', 'Aqoxy4G01870' => 'aox', 'Aqoxy7G00450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.36ZVTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71EM27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5D6C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH3WRE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3NCM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RIM768' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YB5YRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z36GDV' => 'arhy', 'AT1G08250' => 'ath', 'AT1G11790' => 'ath', 'AT2G27820' => 'ath', 'AT3G07630' => 'ath', 'AT3G44720' => 'ath', 'AT5G22630' => 'ath', 'ATR0693G304' => 'atr', 'ATR0794G109' => 'atr', 'ATR0820G120' => 'atr', 'ATR1159G064' => 'atr', 'Atru.chr10.2239' => 'acertr', 'Atru.chr3.3371' => 'acertr', 'Atru.chr6.3202' => 'acertr', 'AUR62006499' => 'cqu', 'AUR62012718' => 'cqu', 'AUR62021938' => 'cqu', 'AUR62023932' => 'cqu', 'AUR62025034' => 'cqu', 'AUR62025035' => 'cqu', 'AUR62038307' => 'cqu', 'AUR62043466' => 'cqu', 'BcaB02g10748' => 'bca', 'BcaB03g13231' => 'bca', 'BcaB03g14689' => 'bca', 'BcaB05g22716' => 'bca', 'BcaB06g28172' => 'bca', 'BcaB08g36413' => 'bca', 'BcaC01g02186' => 'bca', 'BcaC01g04272' => 'bca', 'BcaC02g08080' => 'bca', 'BcaC02g08227' => 'bca', 'BcaC03g13901' => 'bca', 'BcaC04g19593' => 'bca', 'BcaC04g20874' => 'bca', 'BcaC05g29557' => 'bca', 'BcaC06g35505' => 'bca', 'BcaC07g41954' => 'bca', 'BcaC07g41955' => 'bca', 'BcaC07g41956' => 'bca', 'BcaC07g42519' => 'bca', 'BcaC07g42520' => 'bca', 'BcaC07g42523' => 'bca', 'BcaC07g42524' => 'bca', 'BcaC07g42525' => 'bca', 'BcaC08g47480' => 'bca', 'BcaC08g47481' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00530' => 'bna', 'BolC2t07178H' => 'bol', 'BolC3t16567H' => 'bol', 'BolC4t27234H' => 'bol', 'BolC5t29728H' => 'bol', 'BolC5t34622H' => 'bol', 'BolC6t40321H' => 'bol', 'BolC7t42028H' => 'bol', 'BolC8t49125H' => 'bol', 'BolC8t52538H' => 'bol', 'BolC8t52539H' => 'bol', 'BolC9t56681H' => 'bol', 'BolC9t58266H' => 'bol', 'BolSC21t60294H' => 'bol', 'BraA02t05670Z' => 'bra', 'BraA03t12716Z' => 'bra', 'BraA04t17685Z' => 'bra', 'BraA05t22788Z' => 'bra', 'BraA06t24032Z' => 'bra', 'BraA06t25625Z' => 'bra', 'BraA07t27930Z' => 'bra', 'BraA08t35242Z' => 'bra', 'BraA09t38609Z' => 'bra', 'BraA10t43905Z' => 'bra', 'C02p11060' => 'bna', 'C03p42990' => 'bna', 'C03p67310' => 'bna', 'C04p56990' => 'bna', 'C04p58660' => 'bna', 'C05p09890' => 'bna', 'C05p59680' => 'bna', 'C06p19830' => 'bna', 'C06p53040' => 'bna', 'C07p15230' => 'bna', 'C08p50070' => 'bna', 'C08p50090' => 'bna', 'C09p38330' => 'bna', 'C09p53940' => 'bna', 'CAN.G1014.1' => 'can', 'CAN.G644.30' => 'can', 'CAN.G84.47' => 'can', 'CAN.G919.8' => 'can', 'CANSAT54G0113' => 'cansat', 'CANSAT54G1286' => 'cansat', 'CANSAT64G1020' => 'cansat', 'CARHR008080' => 'chi', 'CARHR008090' => 'chi', 'CARHR012130' => 'chi', 'CARHR038390' => 'chi', 'CARHR082330' => 'chi', 'CARHR120520' => 'chi', 'CARHR151470' => 'chi', 'CARHR190950' => 'chi', 'Carub.0001s0760' => 'cru', 'Carub.0001s1146' => 'cru', 'Carub.0003s0721' => 'cru', 'Carub.0004s0858' => 'cru', 'Carub.0005s1040' => 'cru', 'Carub.0006s2035' => 'cru', 'Carub.0015s0005' => 'cru', 'Ca_01607_v3' => 'car', 'Ca_01677_v3' => 'car', 'Ca_06087_v3' => 'car', 'Ca_19238_v3' => 'car', 'Ca_19373_v3' => 'car', 'Ca_21079_v3' => 'car', 'CBR_g54016' => 'cbr', 'CBR_g54018' => 'cbr', 'CBR_g54020' => 'cbr', 'Cc01_g09780' => 'ccan', 'Cc01_g11680' => 'ccan', 'Cc02_g15610' => 'ccan', 'Cc05_g04350' => 'ccan', 'Cc09_g01580' => 'ccan', 'CDE01G0795' => 'cde', 'CDE02G2024' => 'cde', 'CDE02G2260' => 'cde', 'CDE02G4561' => 'cde', 'CDE05G2733' => 'cde', 'CDE05G3422' => 'cde', 'CDE06G2003' => 'cde', 'CDE08G0576' => 'cde', 'CDE09G0048' => 'cde', 'CDE11G0805' => 'cde', 'Cfa003644' => 'cfa', 'Cfa006290' => 'cfa', 'Cfa010080' => 'cfa', 'Cfa011376' => 'cfa', 'Cfa011576' => 'cfa', 'Cfa011577' => 'cfa', 'Cfa014389' => 'cfa', 'Ciclev10006044m.g' => 'ccl', 'Ciclev10006954m.g' => 'ccl', 'Ciclev10015131m.g' => 'ccl', 'Ciclev10015580m.g' => 'ccl', 'Ciclev10028359m.g' => 'ccl', 'Ciclev10028573m.g' => 'ccl', 'CiPaw.03G159300' => 'cil', 'CiPaw.04G115100' => 'cil', 'CiPaw.09G092800' => 'cil', 'CiPaw.10G071800' => 'cil', 'CiPaw.13G105800' => 'cil', 'CiPaw.13G141000' => 'cil', 'CiPaw.14G103400' => 'cil', 'ClCG01G012700' => 'cla', 'ClCG01G012720' => 'cla', 'ClCG01G021920' => 'cla', 'ClCG02G008870' => 'cla', 'ClCG02G020840' => 'cla', 'ClCG02G021930' => 'cla', 'COL.COLO4_19302' => 'col', 'COL.COLO4_25262' => 'col', 'COL.COLO4_31788' => 'col', 'Cpa.g.c34684' => 'cpa', 'Cpa.g.c36520.1' => 'cpa', 'Cpa.g.c45626' => 'cpa', 'Cpa.g.sc121.17' => 'cpa', 'Cpa.g.sc13.22' => 'cpa', 'Cpa.g.sc87.88' => 'cpa', 'Cre06.g261800' => 'cre', 'CsaV3_1G014500' => 'csa', 'CsaV3_1G014510' => 'csa', 'CsaV3_2G034880' => 'csa', 'CsaV3_6G014760' => 'csa', 'CsaV3_6G021500' => 'csa', 'CsaV3_6G048980' => 'csa', 'CSS0002511' => 'camsi', 'CSS0007556' => 'camsi', 'CSS0008532' => 'camsi', 'CSS0009709' => 'camsi', 'CSS0010486' => 'camsi', 'CSS0016768' => 'camsi', 'CSS0023512' => 'camsi', 'CSS0025341' => 'camsi', 'CSS0027999' => 'camsi', 'CSS0028944' => 'camsi', 'CSS0032292' => 'camsi', 'CSS0032464' => 'camsi', 'CSS0037153' => 'camsi', 'CSS0039256' => 'camsi', 'CSS0048392' => 'camsi', 'CSS0050458' => 'camsi', 'DCAR_004224' => 'dca', 'DCAR_006147' => 'dca', 'DCAR_006465' => 'dca', 'DCAR_008159' => 'dca', 'DCAR_012164' => 'dca', 'DCAR_019764' => 'dca', 'Dinv05418' => 'din', 'Dinv10839' => 'din', 'Dinv12521' => 'din', 'Dinv13900' => 'din', 'Dinv29426' => 'din', 'Duzib150G0263' => 'dzi', 'Duzib168G1178' => 'dzi', 'Duzib168G1924' => 'dzi', 'Duzib170G0299' => 'dzi', 'Duzib170G0813' => 'dzi', 'Duzib235G1128' => 'dzi', 'Duzib248G1060' => 'dzi', 'ECA232G1910' => 'eca', 'ECA233G4621' => 'eca', 'ECA238G1216' => 'eca', 'ECA238G1784' => 'eca', 'ECA248G1242' => 'eca', 'EL10Ac8g20071' => 'bvu', 'EL10Ac9g21086' => 'bvu', 'EL10Ac9g22407' => 'bvu', 'EL10Ac9g22412' => 'bvu', 'Eucgr.A01119' => 'egr', 'Eucgr.E04043' => 'egr', 'Eucgr.J00428' => 'egr', 'Eucgr.J00958' => 'egr', 'FAN11G3091' => 'fan', 'FAN11G3651' => 'fan', 'FAN16G2566' => 'fan', 'FAN21G3155' => 'fan', 'FAN21G3400' => 'fan', 'FAN21G3543' => 'fan', 'FAN25G0234' => 'fan', 'FAN25G1422' => 'fan', 'FAN25G3392' => 'fan', 'FvH4_3g01940' => 'fve', 'FvH4_3g29870' => 'fve', 'FvH4_3g33680' => 'fve', 'Glyma.09G004200' => 'gma', 'Glyma.11G151288' => 'gma', 'Glyma.11G189100' => 'gma', 'Glyma.12G072500' => 'gma', 'Glyma.12G085500' => 'gma', 'Glyma.12G181800' => 'gma', 'Glyma.12G193000' => 'gma', 'Glyma.13G309300' => 'gma', 'Glyma.13G319000' => 'gma', 'Glyma.17G012600' => 'gma', 'Gohir.A06G148600' => 'ghi', 'Gohir.A07G115800' => 'ghi', 'Gohir.A08G003600' => 'ghi', 'Gohir.A09G093300' => 'ghi', 'Gohir.A09G105400' => 'ghi', 'Gohir.A09G105500' => 'ghi', 'Gohir.D06G154600' => 'ghi', 'Gohir.D07G120200' => 'ghi', 'Gohir.D08G013900' => 'ghi', 'Gohir.D09G093100' => 'ghi', 'Gohir.D09G102200' => 'ghi', 'Gohir.D09G102300' => 'ghi', 'Gorai.001G129400' => 'gra', 'Gorai.004G008200' => 'gra', 'Gorai.006G109800' => 'gra', 'Gorai.006G119500' => 'gra', 'Gorai.006G121300' => 'gra', 'Gorai.010G180700' => 'gra', 'GSVIVG01012716001' => 'vvi', 'GSVIVG01025118001' => 'vvi', 'GSVIVG01030439001' => 'vvi', 'GSVIVG01031397001' => 'vvi', 'HanXRQChr01g0004201' => 'han', 'HanXRQChr02g0054941' => 'han', 'HanXRQChr05g0141811' => 'han', 'HanXRQChr07g0197751' => 'han', 'HanXRQChr11g0346691' => 'han', 'HanXRQChr13g0396971' => 'han', 'HanXRQChr14g0432951' => 'han', 'HanXRQChr14g0452001' => 'han', 'HanXRQChr15g0496681' => 'han', 'HanXRQChr17g0557491' => 'han', 'HanXRQChr17g0557501' => 'han', 'Haze_06809' => 'cav', 'Haze_12852' => 'cav', 'Haze_15850' => 'cav', 'Haze_23446' => 'cav', 'Haze_23942' => 'cav', 'Haze_23943' => 'cav', 'Hma1.2p1_0091F.1_g046450' => 'hma', 'Hma1.2p1_0128F.1_g059910' => 'hma', 'Hma1.2p1_0249F.1_g102260' => 'hma', 'Hma1.2p1_0453F.1_g156190' => 'hma', 'Hma1.2p1_0695F.1_g204380' => 'hma', 'Hma1.2p1_0749F.1_g212650' => 'hma', 'Hma1.2p1_2156F.1_g315420' => 'hma', 'Hma1.2p1_2686F.1_g326940' => 'hma', 'HPP92_006428' => 'vpl', 'HPP92_012069' => 'vpl', 'HPP92_014129' => 'vpl', 'HPP92_014133' => 'vpl', 'HPP92_017315' => 'vpl', 'HPP92_026445' => 'vpl', 'HPP92_026446' => 'vpl', 'Hund00774' => 'sun', 'Hund07682' => 'sun', 'Hund21413' => 'sun', 'Hund23462' => 'sun', 'Hund23463' => 'sun', 'Lalb_Chr03g0027911' => 'lal', 'Lalb_Chr13g0304271' => 'lal', 'Lalb_Chr19g0137471' => 'lal', 'Lalb_Chr22g0350651' => 'lal', 'Lalb_Chr24g0395151' => 'lal', 'Lj1A1231T40' => 'lonja', 'Lj1A221T48' => 'lonja', 'Lj1C924T12' => 'lonja', 'Lj2C993G6' => 'lonja', 'Lj3g0005790' => 'lja', 'Lj3g0015432' => 'lja', 'Lj3g0017722' => 'lja', 'Lj3g0018497' => 'lja', 'Lj4g0025071' => 'lja', 'Lsat_1_v5_gn_1_129680' => 'lsa', 'Lsat_1_v5_gn_2_25321' => 'lsa', 'Lsat_1_v5_gn_2_95461' => 'lsa', 'Lsat_1_v5_gn_4_159620' => 'lsa', 'Lsat_1_v5_gn_6_41301' => 'lsa', 'Lsat_1_v5_gn_6_74660' => 'lsa', 'Lsat_1_v5_gn_7_11520' => 'lsa', 'Lsat_1_v5_gn_9_67680' => 'lsa', 'Manes.04G008300' => 'mes', 'Manes.04G008400' => 'mes', 'Manes.04G026500' => 'mes', 'Manes.10G135300' => 'mes', 'Manes.11G157300' => 'mes', 'Manes.12G074000' => 'mes', 'Manes.16G006200' => 'mes', 'Manes.17G026400' => 'mes', 'Mapoly0024s0086' => 'mpo', 'Mapoly0024s0087' => 'mpo', 'Mapoly0071s0057' => 'mpo', 'Mapoly0204s0012' => 'mpo', 'MBI04_g37681_MAGBIO' => 'mbi', 'MBI05_g17779_MAGBIO' => 'mbi', 'MBI12_g31184_MAGBIO' => 'mbi', 'MBI17_g11083_MAGBIO' => 'mbi', 'MBI18_g03883_MAGBIO' => 'mbi', 'MBI18_g28940_MAGBIO' => 'mbi', 'MCO01G690' => 'mco', 'MD03G1109900' => 'mdo', 'MD03G1134800' => 'mdo', 'MD05G1348000' => 'mdo', 'MD10G1322400' => 'mdo', 'MD11G1123300' => 'mdo', 'MD11G1157600' => 'mdo', 'Medtr2g084875' => 'mtr', 'Medtr2g088130' => 'mtr', 'Medtr4g055310' => 'mtr', 'Medtr4g061070' => 'mtr', 'Medtr4g132250' => 'mtr', 'MELO3C004795.2' => 'cme', 'MELO3C004797.2' => 'cme', 'MELO3C007396.2' => 'cme', 'MELO3C019277.2' => 'cme', 'MELO3C021449.2' => 'cme', 'MELO3C025736.2' => 'cme', 'Migut.D02175' => 'egut', 'Migut.H01573' => 'egut', 'Migut.M01327' => 'egut', 'Migut.N02513' => 'egut', 'MSTRG.14638' => 'ama', 'MSTRG.18632' => 'ama', 'MSTRG.7203' => 'ama', 'Nitab4.5_0000533g0140' => 'nta', 'Nitab4.5_0000888g0150' => 'nta', 'Nitab4.5_0001453g0040' => 'nta', 'Nitab4.5_0002827g0090' => 'nta', 'Nitab4.5_0003082g0040' => 'nta', 'Nitab4.5_0007799g0040' => 'nta', 'Nitab4.5_0008983g0010' => 'nta', 'Nitab4.5_0009017g0020' => 'nta', 'Nn1g02132' => 'nnu', 'Nn1g03492' => 'nnu', 'Nn1g03493' => 'nnu', 'Nn1g03494' => 'nnu', 'Nn1g07164' => 'nnu', 'Nn1g07291' => 'nnu', 'Nn2g10655' => 'nnu', 'Nn2g11652' => 'nnu', 'Nn2g14008' => 'nnu', 'Nn3g17476' => 'nnu', 'Nn3g17477' => 'nnu', 'Nn4g22370' => 'nnu', 'Nn4g25255' => 'nnu', 'Nn5g27755' => 'nnu', 'Nn6g34260' => 'nnu', 'Nn6g35041' => 'nnu', 'Oeu005924.1' => 'oeu', 'Oeu008383.1' => 'oeu', 'Oeu014928.1' => 'oeu', 'Oeu019889.1' => 'oeu', 'Oeu022271.1' => 'oeu', 'Oeu025271.1' => 'oeu', 'Oeu036302.1' => 'oeu', 'Oeu044100.1' => 'oeu', 'Os01g0528300' => 'osa', 'Os03g0286200' => 'osa', 'Os04g0406600' => 'osa', 'Os07g0512000' => 'osa', 'Os07g0694600' => 'osa', 'Os08g0411000' => 'osa', 'Os09g0565700' => 'osa', 'Os09g0566050' => 'osa', 'Os10g0523700' => 'osa', 'Peaxi162Scf00002g00514' => 'pax', 'Peaxi162Scf00047g01817' => 'pax', 'Peaxi162Scf00114g00001' => 'pax', 'Peaxi162Scf00147g00613' => 'pax', 'Peaxi162Scf00389g00425' => 'pax', 'PGR042G1139' => 'pgr', 'PGR042G3273' => 'pgr', 'PGR102G2180' => 'pgr', 'PGR119G0234' => 'pgr', 'PGR119G0668' => 'pgr', 'PGSC0003DMG400007122' => 'stu', 'PGSC0003DMG400016478' => 'stu', 'PGSC0003DMG400025374' => 'stu', 'PGSC0003DMG400026536' => 'stu', 'Phvul.003G079600' => 'pvu', 'Phvul.005G115600' => 'pvu', 'Phvul.005G127100' => 'pvu', 'Phvul.006G149500' => 'pvu', 'Phvul.006G149600' => 'pvu', 'Phvul.011G071800' => 'pvu', 'Phvul.011G090400' => 'pvu', 'Potri.004G013400' => 'ptr', 'Potri.004G188100' => 'ptr', 'Potri.008G195500' => 'ptr', 'Potri.009G148800' => 'ptr', 'Potri.011G004700' => 'ptr', 'Pp3c17_22810' => 'ppa', 'Pp3c18_4480' => 'ppa', 'Pp3c19_13030' => 'ppa', 'Pp3c1_33620' => 'ppa', 'Pp3c2_9380' => 'ppa', 'PRCOL_00001023' => 'pco', 'Prupe.3G216300' => 'ppe', 'Prupe.4G019500' => 'ppe', 'Prupe.6G092500' => 'ppe', 'Prupe.6G119200' => 'ppe', 'Psat0s1945g0080' => 'psa', 'Psat0s4167g0040' => 'psa', 'Psat1g185800' => 'psa', 'Psat4g006440' => 'psa', 'Psat4g006480' => 'psa', 'Psat4g168120' => 'psa', 'Psat5g255680' => 'psa', 'Psat5g261760' => 'psa', 'Psat7g222120' => 'psa', 'PSO063G7252' => 'pso', 'PSO170G4778' => 'pso', 'PSO210G2249' => 'pso', 'PSO339G2411' => 'pso', 'PSO339G2457' => 'pso', 'PSO339G2854' => 'pso', 'PSO339G4288' => 'pso', 'PSO339G4615' => 'pso', 'PSO384G2796' => 'pso', 'PSO384G2940' => 'pso', 'PSO384G4227' => 'pso', 'PSO478G1425' => 'pso', 'PSO541G3863' => 'pso', 'PSO675G0507' => 'pso', 'PSO782G0338' => 'pso', 'PSO832G0644' => 'pso', 'QL01p013664' => 'qlo', 'QL01p036598' => 'qlo', 'QL05p072984' => 'qlo', 'QL08p005768' => 'qlo', 'QL08p032743' => 'qlo', 'QL93p0073_0439' => 'qlo', 'QL93p0073_0444' => 'qlo', 'RcHm_v2.0_Chr5g0002851' => 'rch', 'RcHm_v2.0_Chr5g0055201' => 'rch', 'RcHm_v2.0_Chr5g0061191' => 'rch', 'RcHm_v2.0_Chr7g0203231' => 'rch', 'Rhsim01G0208100' => 'rsi', 'Rhsim01G0208200' => 'rsi', 'Rhsim02G0106500' => 'rsi', 'Rhsim03G0107900' => 'rsi', 'Rhsim06G0163400' => 'rsi', 'Rhsim13G0105200' => 'rsi', 'Sabra04G0006300' => 'sbr', 'Sabra04G0127000' => 'sbr', 'Sabra08G0148700' => 'sbr', 'Sabra09G0117400' => 'sbr', 'SalBow1G3326' => 'sbo', 'SalBow3G3228' => 'sbo', 'SalBow6G1634' => 'sbo', 'SalBow6G3603' => 'sbo', 'SalBow6G5266' => 'sbo', 'SalBow7G2265' => 'sbo', 'SalBow8G0850' => 'sbo', 'SalBow8G2592' => 'sbo', 'Sc05g0009240' => 'sci', 'Sc12g0002300' => 'sci', 'Sc21g0000100' => 'sci', 'Sc21g0004720' => 'sci', 'Sed0002949' => 'sed', 'Sed0004114' => 'sed', 'Sed0004306' => 'sed', 'Sed0006172' => 'sed', 'Sed0008413' => 'sed', 'Sed0013809' => 'sed', 'Sed0019556' => 'sed', 'SEGI_03570' => 'sgi', 'SEGI_07859' => 'sgi', 'SEGI_15042' => 'sgi', 'SEGI_16263' => 'sgi', 'SEGI_16552' => 'sgi', 'SEGI_24331' => 'sgi', 'SEGI_27316' => 'sgi', 'SEGI_29521' => 'sgi', 'SEGI_41342' => 'sgi', 'SGA_v2.0_scaffold27G11617' => 'sas', 'SGA_v2.0_scaffold316G48428' => 'sas', 'SGA_v2.0_scaffold49G18261' => 'sas', 'SGA_v2.0_scaffold7G03831' => 'sas', 'SGA_v2.0_scaffold93G28359' => 'sas', 'SHI02210' => 'shi', 'SHI06028' => 'shi', 'SHI06321' => 'shi', 'SMO111G0012' => 'smo', 'SMO228G0080' => 'smo', 'SMO356G0756' => 'smo', 'Solyc02g080620.3' => 'sly', 'Solyc06g074530.1' => 'sly', 'Solyc11g066890.1' => 'sly', 'Solyc11g072520.3' => 'sly', 'Sopen02g025330' => 'spe', 'Sopen06g031000' => 'spe', 'Sopen09g008240' => 'spe', 'Sopen09g025210' => 'spe', 'Sopen11g026600' => 'spe', 'Sopen11g030170' => 'spe', 'Sp1g10420' => 'spa', 'Sp3g06570' => 'spa', 'Sp4g10660' => 'spa', 'Sp5g16460' => 'spa', 'Sp6g22710' => 'spa', 'TAR365G0112' => 'tar', 'TAR369G0717' => 'tar', 'TAR374G0976' => 'tar', 'TAR623G1128' => 'tar', 'TAR626G1937' => 'tar', 'TAR627G0123' => 'tar', 'TAR628G0305' => 'tar', 'TAR636G1176' => 'tar', 'TAR636G2442' => 'tar', 'THA.LOC104800556' => 'tha', 'THA.LOC104809501' => 'tha', 'THA.LOC104815126' => 'tha', 'THA.LOC104815732' => 'tha', 'THA.LOC104823528' => 'tha', 'Thecc.02G365600' => 'tca', 'Thecc.06G222300' => 'tca', 'Thecc.09G261800' => 'tca', 'Thecc.09G291400' => 'tca', 'Thhalv10003028m.g' => 'esa', 'Thhalv10007886m.g' => 'esa', 'Thhalv10016085m.g' => 'esa', 'Thhalv10016681m.g' => 'esa', 'Thhalv10020951m.g' => 'esa', 'TPR.G15598' => 'tpr', 'TPR.G29305' => 'tpr', 'TPR.G32395' => 'tpr', 'TPR.G36998' => 'tpr', 'TPR.G4227' => 'tpr', 'TWI18G1433' => 'twi', 'TWI31G0755' => 'twi', 'TWI38G0912' => 'twi', 'TWI75G1097' => 'twi', 'TWI75G1619' => 'twi', 'TWI79G1336' => 'twi', 'unitig_0.g943' => 'ugi', 'unitig_0.g944' => 'ugi', 'unitig_22.g6646' => 'ugi', 'unitig_37.g12681' => 'ugi', 'unitig_8.g3290' => 'ugi', 'vmacro03278' => 'vma', 'vmacro12197' => 'vma', 'vmacro14478' => 'vma', 'vmacro15787' => 'vma', 'vmacro15789' => 'vma', 'vmacro15790' => 'vma', 'vmacro15806' => 'vma', 'vmacro22907' => 'vma', 'vmacro22908' => 'vma', 'vmacro22909' => 'vma', 'vmacro23108' => 'vma', 'VMungo0540G0540' => 'vmu', 'VMungo0540G2468' => 'vmu', 'VMungo1080G0390' => 'vmu', 'VMungo1080G1165' => 'vmu', 'VMungo1127G0170' => 'vmu', 'VMungo1127G2099' => 'vmu', 'VMungo1215G3013' => 'vmu', 'Zm00001eb013110' => 'zma', 'Zm00001eb084260' => 'zma', 'Zm00001eb096110' => 'zma', 'Zm00001eb217510' => 'zma', 'Zm00001eb322550' => 'zma', 'Zm00001eb390770' => 'zma', 'Zm00001eb397170' => 'zma', 'Zm00001eb404610' => 'zma', 'Zm00001eb421790' => 'zma' ) $gf_id = 'HOM05D000911' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000911' ) $data_identifier = 'HOM05D000911' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 16, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 5, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 6, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 8, 'nnu' => (int) 16, 'oeu' => (int) 8, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 5, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 16, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421790' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000911', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27780' => 'bna', 'A03p35380' => 'bna', 'A04p21160' => 'bna', 'A05p40570' => 'bna', 'A06p26900' => 'bna', 'A08p33230' => 'bna', 'A09p65960' => 'bna', 'A10p18290' => 'bna', 'Aa31LG1G12990' => 'aar', 'Aa31LG1G2980' => 'aar', 'Aa31LG4G14320' => 'aar', 'Aa31LG7G11800' => 'aar', 'Aa31sc36G50' => 'aar', 'Aa31sc36G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3721' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5459' => 'aag', 'Actinidia03028' => 'ach', 'Actinidia03753' => 'ach', 'Actinidia04187' => 'ach', 'Actinidia05509' => 'ach', 'Actinidia24180' => 'ach', 'Actinidia26906' => 'ach', 'Actinidia37097' => 'ach', 'Actinidia38249' => 'ach', 'Ah.01g003470' => 'amhyb', 'Ah.01g004580' => 'amhyb', 'Ah.01g014850' => 'amhyb', 'Ah.01g016830' => 'amhyb', 'Ah.14g088000' => 'amhyb', 'AL1G22980' => 'aly', 'AL3G18990' => 'aly', 'AL4G22440' => 'aly', 'AL4G33180' => 'aly', 'AL5G22920' => 'aly', 'AL6G33660' => 'aly', 'AL8G20720' => 'aly', 'Aqoxy1G00935' => 'aox', 'Aqoxy1G02094' => 'aox', 'Aqoxy2G01239' => 'aox', 'Aqoxy4G01870' => 'aox', 'Aqoxy7G00450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.36ZVTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71EM27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5D6C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH3WRE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3NCM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RIM768' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YB5YRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z36GDV' => 'arhy', 'AT1G08250' => 'ath', 'AT1G11790' => 'ath', 'AT2G27820' => 'ath', 'AT3G07630' => 'ath', 'AT3G44720' => 'ath', 'AT5G22630' => 'ath', 'ATR0693G304' => 'atr', 'ATR0794G109' => 'atr', 'ATR0820G120' => 'atr', 'ATR1159G064' => 'atr', 'Atru.chr10.2239' => 'acertr', 'Atru.chr3.3371' => 'acertr', 'Atru.chr6.3202' => 'acertr', 'AUR62006499' => 'cqu', 'AUR62012718' => 'cqu', 'AUR62021938' => 'cqu', 'AUR62023932' => 'cqu', 'AUR62025034' => 'cqu', 'AUR62025035' => 'cqu', 'AUR62038307' => 'cqu', 'AUR62043466' => 'cqu', 'BcaB02g10748' => 'bca', 'BcaB03g13231' => 'bca', 'BcaB03g14689' => 'bca', 'BcaB05g22716' => 'bca', 'BcaB06g28172' => 'bca', 'BcaB08g36413' => 'bca', 'BcaC01g02186' => 'bca', 'BcaC01g04272' => 'bca', 'BcaC02g08080' => 'bca', 'BcaC02g08227' => 'bca', 'BcaC03g13901' => 'bca', 'BcaC04g19593' => 'bca', 'BcaC04g20874' => 'bca', 'BcaC05g29557' => 'bca', 'BcaC06g35505' => 'bca', 'BcaC07g41954' => 'bca', 'BcaC07g41955' => 'bca', 'BcaC07g41956' => 'bca', 'BcaC07g42519' => 'bca', 'BcaC07g42520' => 'bca', 'BcaC07g42523' => 'bca', 'BcaC07g42524' => 'bca', 'BcaC07g42525' => 'bca', 'BcaC08g47480' => 'bca', 'BcaC08g47481' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00530' => 'bna', 'BolC2t07178H' => 'bol', 'BolC3t16567H' => 'bol', 'BolC4t27234H' => 'bol', 'BolC5t29728H' => 'bol', 'BolC5t34622H' => 'bol', 'BolC6t40321H' => 'bol', 'BolC7t42028H' => 'bol', 'BolC8t49125H' => 'bol', 'BolC8t52538H' => 'bol', 'BolC8t52539H' => 'bol', 'BolC9t56681H' => 'bol', 'BolC9t58266H' => 'bol', 'BolSC21t60294H' => 'bol', 'BraA02t05670Z' => 'bra', 'BraA03t12716Z' => 'bra', 'BraA04t17685Z' => 'bra', 'BraA05t22788Z' => 'bra', 'BraA06t24032Z' => 'bra', 'BraA06t25625Z' => 'bra', 'BraA07t27930Z' => 'bra', 'BraA08t35242Z' => 'bra', 'BraA09t38609Z' => 'bra', 'BraA10t43905Z' => 'bra', 'C02p11060' => 'bna', 'C03p42990' => 'bna', 'C03p67310' => 'bna', 'C04p56990' => 'bna', 'C04p58660' => 'bna', 'C05p09890' => 'bna', 'C05p59680' => 'bna', 'C06p19830' => 'bna', 'C06p53040' => 'bna', 'C07p15230' => 'bna', 'C08p50070' => 'bna', 'C08p50090' => 'bna', 'C09p38330' => 'bna', 'C09p53940' => 'bna', 'CAN.G1014.1' => 'can', 'CAN.G644.30' => 'can', 'CAN.G84.47' => 'can', 'CAN.G919.8' => 'can', 'CANSAT54G0113' => 'cansat', 'CANSAT54G1286' => 'cansat', 'CANSAT64G1020' => 'cansat', 'CARHR008080' => 'chi', 'CARHR008090' => 'chi', 'CARHR012130' => 'chi', 'CARHR038390' => 'chi', 'CARHR082330' => 'chi', 'CARHR120520' => 'chi', 'CARHR151470' => 'chi', 'CARHR190950' => 'chi', 'Carub.0001s0760' => 'cru', 'Carub.0001s1146' => 'cru', 'Carub.0003s0721' => 'cru', 'Carub.0004s0858' => 'cru', 'Carub.0005s1040' => 'cru', 'Carub.0006s2035' => 'cru', 'Carub.0015s0005' => 'cru', 'Ca_01607_v3' => 'car', 'Ca_01677_v3' => 'car', 'Ca_06087_v3' => 'car', 'Ca_19238_v3' => 'car', 'Ca_19373_v3' => 'car', 'Ca_21079_v3' => 'car', 'CBR_g54016' => 'cbr', 'CBR_g54018' => 'cbr', 'CBR_g54020' => 'cbr', 'Cc01_g09780' => 'ccan', 'Cc01_g11680' => 'ccan', 'Cc02_g15610' => 'ccan', 'Cc05_g04350' => 'ccan', 'Cc09_g01580' => 'ccan', 'CDE01G0795' => 'cde', 'CDE02G2024' => 'cde', 'CDE02G2260' => 'cde', 'CDE02G4561' => 'cde', 'CDE05G2733' => 'cde', 'CDE05G3422' => 'cde', 'CDE06G2003' => 'cde', 'CDE08G0576' => 'cde', 'CDE09G0048' => 'cde', 'CDE11G0805' => 'cde', 'Cfa003644' => 'cfa', 'Cfa006290' => 'cfa', 'Cfa010080' => 'cfa', 'Cfa011376' => 'cfa', 'Cfa011576' => 'cfa', 'Cfa011577' => 'cfa', 'Cfa014389' => 'cfa', 'Ciclev10006044m.g' => 'ccl', 'Ciclev10006954m.g' => 'ccl', 'Ciclev10015131m.g' => 'ccl', 'Ciclev10015580m.g' => 'ccl', 'Ciclev10028359m.g' => 'ccl', 'Ciclev10028573m.g' => 'ccl', 'CiPaw.03G159300' => 'cil', 'CiPaw.04G115100' => 'cil', 'CiPaw.09G092800' => 'cil', 'CiPaw.10G071800' => 'cil', 'CiPaw.13G105800' => 'cil', 'CiPaw.13G141000' => 'cil', 'CiPaw.14G103400' => 'cil', 'ClCG01G012700' => 'cla', 'ClCG01G012720' => 'cla', 'ClCG01G021920' => 'cla', 'ClCG02G008870' => 'cla', 'ClCG02G020840' => 'cla', 'ClCG02G021930' => 'cla', 'COL.COLO4_19302' => 'col', 'COL.COLO4_25262' => 'col', 'COL.COLO4_31788' => 'col', 'Cpa.g.c34684' => 'cpa', 'Cpa.g.c36520.1' => 'cpa', 'Cpa.g.c45626' => 'cpa', 'Cpa.g.sc121.17' => 'cpa', 'Cpa.g.sc13.22' => 'cpa', 'Cpa.g.sc87.88' => 'cpa', 'Cre06.g261800' => 'cre', 'CsaV3_1G014500' => 'csa', 'CsaV3_1G014510' => 'csa', 'CsaV3_2G034880' => 'csa', 'CsaV3_6G014760' => 'csa', 'CsaV3_6G021500' => 'csa', 'CsaV3_6G048980' => 'csa', 'CSS0002511' => 'camsi', 'CSS0007556' => 'camsi', 'CSS0008532' => 'camsi', 'CSS0009709' => 'camsi', 'CSS0010486' => 'camsi', 'CSS0016768' => 'camsi', 'CSS0023512' => 'camsi', 'CSS0025341' => 'camsi', 'CSS0027999' => 'camsi', 'CSS0028944' => 'camsi', 'CSS0032292' => 'camsi', 'CSS0032464' => 'camsi', 'CSS0037153' => 'camsi', 'CSS0039256' => 'camsi', 'CSS0048392' => 'camsi', 'CSS0050458' => 'camsi', 'DCAR_004224' => 'dca', 'DCAR_006147' => 'dca', 'DCAR_006465' => 'dca', 'DCAR_008159' => 'dca', 'DCAR_012164' => 'dca', 'DCAR_019764' => 'dca', 'Dinv05418' => 'din', 'Dinv10839' => 'din', 'Dinv12521' => 'din', 'Dinv13900' => 'din', 'Dinv29426' => 'din', 'Duzib150G0263' => 'dzi', 'Duzib168G1178' => 'dzi', 'Duzib168G1924' => 'dzi', 'Duzib170G0299' => 'dzi', 'Duzib170G0813' => 'dzi', 'Duzib235G1128' => 'dzi', 'Duzib248G1060' => 'dzi', 'ECA232G1910' => 'eca', 'ECA233G4621' => 'eca', 'ECA238G1216' => 'eca', 'ECA238G1784' => 'eca', 'ECA248G1242' => 'eca', 'EL10Ac8g20071' => 'bvu', 'EL10Ac9g21086' => 'bvu', 'EL10Ac9g22407' => 'bvu', 'EL10Ac9g22412' => 'bvu', 'Eucgr.A01119' => 'egr', 'Eucgr.E04043' => 'egr', 'Eucgr.J00428' => 'egr', 'Eucgr.J00958' => 'egr', 'FAN11G3091' => 'fan', 'FAN11G3651' => 'fan', 'FAN16G2566' => 'fan', 'FAN21G3155' => 'fan', 'FAN21G3400' => 'fan', 'FAN21G3543' => 'fan', 'FAN25G0234' => 'fan', 'FAN25G1422' => 'fan', 'FAN25G3392' => 'fan', 'FvH4_3g01940' => 'fve', 'FvH4_3g29870' => 'fve', 'FvH4_3g33680' => 'fve', 'Glyma.09G004200' => 'gma', 'Glyma.11G151288' => 'gma', 'Glyma.11G189100' => 'gma', 'Glyma.12G072500' => 'gma', 'Glyma.12G085500' => 'gma', 'Glyma.12G181800' => 'gma', 'Glyma.12G193000' => 'gma', 'Glyma.13G309300' => 'gma', 'Glyma.13G319000' => 'gma', 'Glyma.17G012600' => 'gma', 'Gohir.A06G148600' => 'ghi', 'Gohir.A07G115800' => 'ghi', 'Gohir.A08G003600' => 'ghi', 'Gohir.A09G093300' => 'ghi', 'Gohir.A09G105400' => 'ghi', 'Gohir.A09G105500' => 'ghi', 'Gohir.D06G154600' => 'ghi', 'Gohir.D07G120200' => 'ghi', 'Gohir.D08G013900' => 'ghi', 'Gohir.D09G093100' => 'ghi', 'Gohir.D09G102200' => 'ghi', 'Gohir.D09G102300' => 'ghi', 'Gorai.001G129400' => 'gra', 'Gorai.004G008200' => 'gra', 'Gorai.006G109800' => 'gra', 'Gorai.006G119500' => 'gra', 'Gorai.006G121300' => 'gra', 'Gorai.010G180700' => 'gra', 'GSVIVG01012716001' => 'vvi', 'GSVIVG01025118001' => 'vvi', 'GSVIVG01030439001' => 'vvi', 'GSVIVG01031397001' => 'vvi', 'HanXRQChr01g0004201' => 'han', 'HanXRQChr02g0054941' => 'han', 'HanXRQChr05g0141811' => 'han', 'HanXRQChr07g0197751' => 'han', 'HanXRQChr11g0346691' => 'han', 'HanXRQChr13g0396971' => 'han', 'HanXRQChr14g0432951' => 'han', 'HanXRQChr14g0452001' => 'han', 'HanXRQChr15g0496681' => 'han', 'HanXRQChr17g0557491' => 'han', 'HanXRQChr17g0557501' => 'han', 'Haze_06809' => 'cav', 'Haze_12852' => 'cav', 'Haze_15850' => 'cav', 'Haze_23446' => 'cav', 'Haze_23942' => 'cav', 'Haze_23943' => 'cav', 'Hma1.2p1_0091F.1_g046450' => 'hma', 'Hma1.2p1_0128F.1_g059910' => 'hma', 'Hma1.2p1_0249F.1_g102260' => 'hma', 'Hma1.2p1_0453F.1_g156190' => 'hma', 'Hma1.2p1_0695F.1_g204380' => 'hma', 'Hma1.2p1_0749F.1_g212650' => 'hma', 'Hma1.2p1_2156F.1_g315420' => 'hma', 'Hma1.2p1_2686F.1_g326940' => 'hma', 'HPP92_006428' => 'vpl', 'HPP92_012069' => 'vpl', 'HPP92_014129' => 'vpl', 'HPP92_014133' => 'vpl', 'HPP92_017315' => 'vpl', 'HPP92_026445' => 'vpl', 'HPP92_026446' => 'vpl', 'Hund00774' => 'sun', 'Hund07682' => 'sun', 'Hund21413' => 'sun', 'Hund23462' => 'sun', 'Hund23463' => 'sun', 'Lalb_Chr03g0027911' => 'lal', 'Lalb_Chr13g0304271' => 'lal', 'Lalb_Chr19g0137471' => 'lal', 'Lalb_Chr22g0350651' => 'lal', 'Lalb_Chr24g0395151' => 'lal', 'Lj1A1231T40' => 'lonja', 'Lj1A221T48' => 'lonja', 'Lj1C924T12' => 'lonja', 'Lj2C993G6' => 'lonja', 'Lj3g0005790' => 'lja', 'Lj3g0015432' => 'lja', 'Lj3g0017722' => 'lja', 'Lj3g0018497' => 'lja', 'Lj4g0025071' => 'lja', 'Lsat_1_v5_gn_1_129680' => 'lsa', 'Lsat_1_v5_gn_2_25321' => 'lsa', 'Lsat_1_v5_gn_2_95461' => 'lsa', 'Lsat_1_v5_gn_4_159620' => 'lsa', 'Lsat_1_v5_gn_6_41301' => 'lsa', 'Lsat_1_v5_gn_6_74660' => 'lsa', 'Lsat_1_v5_gn_7_11520' => 'lsa', 'Lsat_1_v5_gn_9_67680' => 'lsa', 'Manes.04G008300' => 'mes', 'Manes.04G008400' => 'mes', 'Manes.04G026500' => 'mes', 'Manes.10G135300' => 'mes', 'Manes.11G157300' => 'mes', 'Manes.12G074000' => 'mes', 'Manes.16G006200' => 'mes', 'Manes.17G026400' => 'mes', 'Mapoly0024s0086' => 'mpo', 'Mapoly0024s0087' => 'mpo', 'Mapoly0071s0057' => 'mpo', 'Mapoly0204s0012' => 'mpo', 'MBI04_g37681_MAGBIO' => 'mbi', 'MBI05_g17779_MAGBIO' => 'mbi', 'MBI12_g31184_MAGBIO' => 'mbi', 'MBI17_g11083_MAGBIO' => 'mbi', 'MBI18_g03883_MAGBIO' => 'mbi', 'MBI18_g28940_MAGBIO' => 'mbi', 'MCO01G690' => 'mco', 'MD03G1109900' => 'mdo', 'MD03G1134800' => 'mdo', 'MD05G1348000' => 'mdo', 'MD10G1322400' => 'mdo', 'MD11G1123300' => 'mdo', 'MD11G1157600' => 'mdo', 'Medtr2g084875' => 'mtr', 'Medtr2g088130' => 'mtr', 'Medtr4g055310' => 'mtr', 'Medtr4g061070' => 'mtr', 'Medtr4g132250' => 'mtr', 'MELO3C004795.2' => 'cme', 'MELO3C004797.2' => 'cme', 'MELO3C007396.2' => 'cme', 'MELO3C019277.2' => 'cme', 'MELO3C021449.2' => 'cme', 'MELO3C025736.2' => 'cme', 'Migut.D02175' => 'egut', 'Migut.H01573' => 'egut', 'Migut.M01327' => 'egut', 'Migut.N02513' => 'egut', 'MSTRG.14638' => 'ama', 'MSTRG.18632' => 'ama', 'MSTRG.7203' => 'ama', 'Nitab4.5_0000533g0140' => 'nta', 'Nitab4.5_0000888g0150' => 'nta', 'Nitab4.5_0001453g0040' => 'nta', 'Nitab4.5_0002827g0090' => 'nta', 'Nitab4.5_0003082g0040' => 'nta', 'Nitab4.5_0007799g0040' => 'nta', 'Nitab4.5_0008983g0010' => 'nta', 'Nitab4.5_0009017g0020' => 'nta', 'Nn1g02132' => 'nnu', 'Nn1g03492' => 'nnu', 'Nn1g03493' => 'nnu', 'Nn1g03494' => 'nnu', 'Nn1g07164' => 'nnu', 'Nn1g07291' => 'nnu', 'Nn2g10655' => 'nnu', 'Nn2g11652' => 'nnu', 'Nn2g14008' => 'nnu', 'Nn3g17476' => 'nnu', 'Nn3g17477' => 'nnu', 'Nn4g22370' => 'nnu', 'Nn4g25255' => 'nnu', 'Nn5g27755' => 'nnu', 'Nn6g34260' => 'nnu', 'Nn6g35041' => 'nnu', 'Oeu005924.1' => 'oeu', 'Oeu008383.1' => 'oeu', 'Oeu014928.1' => 'oeu', 'Oeu019889.1' => 'oeu', 'Oeu022271.1' => 'oeu', 'Oeu025271.1' => 'oeu', 'Oeu036302.1' => 'oeu', 'Oeu044100.1' => 'oeu', 'Os01g0528300' => 'osa', 'Os03g0286200' => 'osa', 'Os04g0406600' => 'osa', 'Os07g0512000' => 'osa', 'Os07g0694600' => 'osa', 'Os08g0411000' => 'osa', 'Os09g0565700' => 'osa', 'Os09g0566050' => 'osa', 'Os10g0523700' => 'osa', 'Peaxi162Scf00002g00514' => 'pax', 'Peaxi162Scf00047g01817' => 'pax', 'Peaxi162Scf00114g00001' => 'pax', 'Peaxi162Scf00147g00613' => 'pax', 'Peaxi162Scf00389g00425' => 'pax', 'PGR042G1139' => 'pgr', 'PGR042G3273' => 'pgr', 'PGR102G2180' => 'pgr', 'PGR119G0234' => 'pgr', 'PGR119G0668' => 'pgr', 'PGSC0003DMG400007122' => 'stu', 'PGSC0003DMG400016478' => 'stu', 'PGSC0003DMG400025374' => 'stu', 'PGSC0003DMG400026536' => 'stu', 'Phvul.003G079600' => 'pvu', 'Phvul.005G115600' => 'pvu', 'Phvul.005G127100' => 'pvu', 'Phvul.006G149500' => 'pvu', 'Phvul.006G149600' => 'pvu', 'Phvul.011G071800' => 'pvu', 'Phvul.011G090400' => 'pvu', 'Potri.004G013400' => 'ptr', 'Potri.004G188100' => 'ptr', 'Potri.008G195500' => 'ptr', 'Potri.009G148800' => 'ptr', 'Potri.011G004700' => 'ptr', 'Pp3c17_22810' => 'ppa', 'Pp3c18_4480' => 'ppa', 'Pp3c19_13030' => 'ppa', 'Pp3c1_33620' => 'ppa', 'Pp3c2_9380' => 'ppa', 'PRCOL_00001023' => 'pco', 'Prupe.3G216300' => 'ppe', 'Prupe.4G019500' => 'ppe', 'Prupe.6G092500' => 'ppe', 'Prupe.6G119200' => 'ppe', 'Psat0s1945g0080' => 'psa', 'Psat0s4167g0040' => 'psa', 'Psat1g185800' => 'psa', 'Psat4g006440' => 'psa', 'Psat4g006480' => 'psa', 'Psat4g168120' => 'psa', 'Psat5g255680' => 'psa', 'Psat5g261760' => 'psa', 'Psat7g222120' => 'psa', 'PSO063G7252' => 'pso', 'PSO170G4778' => 'pso', 'PSO210G2249' => 'pso', 'PSO339G2411' => 'pso', 'PSO339G2457' => 'pso', 'PSO339G2854' => 'pso', 'PSO339G4288' => 'pso', 'PSO339G4615' => 'pso', 'PSO384G2796' => 'pso', 'PSO384G2940' => 'pso', 'PSO384G4227' => 'pso', 'PSO478G1425' => 'pso', 'PSO541G3863' => 'pso', 'PSO675G0507' => 'pso', 'PSO782G0338' => 'pso', 'PSO832G0644' => 'pso', 'QL01p013664' => 'qlo', 'QL01p036598' => 'qlo', 'QL05p072984' => 'qlo', 'QL08p005768' => 'qlo', 'QL08p032743' => 'qlo', 'QL93p0073_0439' => 'qlo', 'QL93p0073_0444' => 'qlo', 'RcHm_v2.0_Chr5g0002851' => 'rch', 'RcHm_v2.0_Chr5g0055201' => 'rch', 'RcHm_v2.0_Chr5g0061191' => 'rch', 'RcHm_v2.0_Chr7g0203231' => 'rch', 'Rhsim01G0208100' => 'rsi', 'Rhsim01G0208200' => 'rsi', 'Rhsim02G0106500' => 'rsi', 'Rhsim03G0107900' => 'rsi', 'Rhsim06G0163400' => 'rsi', 'Rhsim13G0105200' => 'rsi', 'Sabra04G0006300' => 'sbr', 'Sabra04G0127000' => 'sbr', 'Sabra08G0148700' => 'sbr', 'Sabra09G0117400' => 'sbr', 'SalBow1G3326' => 'sbo', 'SalBow3G3228' => 'sbo', 'SalBow6G1634' => 'sbo', 'SalBow6G3603' => 'sbo', 'SalBow6G5266' => 'sbo', 'SalBow7G2265' => 'sbo', 'SalBow8G0850' => 'sbo', 'SalBow8G2592' => 'sbo', 'Sc05g0009240' => 'sci', 'Sc12g0002300' => 'sci', 'Sc21g0000100' => 'sci', 'Sc21g0004720' => 'sci', 'Sed0002949' => 'sed', 'Sed0004114' => 'sed', 'Sed0004306' => 'sed', 'Sed0006172' => 'sed', 'Sed0008413' => 'sed', 'Sed0013809' => 'sed', 'Sed0019556' => 'sed', 'SEGI_03570' => 'sgi', 'SEGI_07859' => 'sgi', 'SEGI_15042' => 'sgi', 'SEGI_16263' => 'sgi', 'SEGI_16552' => 'sgi', 'SEGI_24331' => 'sgi', 'SEGI_27316' => 'sgi', 'SEGI_29521' => 'sgi', 'SEGI_41342' => 'sgi', 'SGA_v2.0_scaffold27G11617' => 'sas', 'SGA_v2.0_scaffold316G48428' => 'sas', 'SGA_v2.0_scaffold49G18261' => 'sas', 'SGA_v2.0_scaffold7G03831' => 'sas', 'SGA_v2.0_scaffold93G28359' => 'sas', 'SHI02210' => 'shi', 'SHI06028' => 'shi', 'SHI06321' => 'shi', 'SMO111G0012' => 'smo', 'SMO228G0080' => 'smo', 'SMO356G0756' => 'smo', 'Solyc02g080620.3' => 'sly', 'Solyc06g074530.1' => 'sly', 'Solyc11g066890.1' => 'sly', 'Solyc11g072520.3' => 'sly', 'Sopen02g025330' => 'spe', 'Sopen06g031000' => 'spe', 'Sopen09g008240' => 'spe', 'Sopen09g025210' => 'spe', 'Sopen11g026600' => 'spe', 'Sopen11g030170' => 'spe', 'Sp1g10420' => 'spa', 'Sp3g06570' => 'spa', 'Sp4g10660' => 'spa', 'Sp5g16460' => 'spa', 'Sp6g22710' => 'spa', 'TAR365G0112' => 'tar', 'TAR369G0717' => 'tar', 'TAR374G0976' => 'tar', 'TAR623G1128' => 'tar', 'TAR626G1937' => 'tar', 'TAR627G0123' => 'tar', 'TAR628G0305' => 'tar', 'TAR636G1176' => 'tar', 'TAR636G2442' => 'tar', 'THA.LOC104800556' => 'tha', 'THA.LOC104809501' => 'tha', 'THA.LOC104815126' => 'tha', 'THA.LOC104815732' => 'tha', 'THA.LOC104823528' => 'tha', 'Thecc.02G365600' => 'tca', 'Thecc.06G222300' => 'tca', 'Thecc.09G261800' => 'tca', 'Thecc.09G291400' => 'tca', 'Thhalv10003028m.g' => 'esa', 'Thhalv10007886m.g' => 'esa', 'Thhalv10016085m.g' => 'esa', 'Thhalv10016681m.g' => 'esa', 'Thhalv10020951m.g' => 'esa', 'TPR.G15598' => 'tpr', 'TPR.G29305' => 'tpr', 'TPR.G32395' => 'tpr', 'TPR.G36998' => 'tpr', 'TPR.G4227' => 'tpr', 'TWI18G1433' => 'twi', 'TWI31G0755' => 'twi', 'TWI38G0912' => 'twi', 'TWI75G1097' => 'twi', 'TWI75G1619' => 'twi', 'TWI79G1336' => 'twi', 'unitig_0.g943' => 'ugi', 'unitig_0.g944' => 'ugi', 'unitig_22.g6646' => 'ugi', 'unitig_37.g12681' => 'ugi', 'unitig_8.g3290' => 'ugi', 'vmacro03278' => 'vma', 'vmacro12197' => 'vma', 'vmacro14478' => 'vma', 'vmacro15787' => 'vma', 'vmacro15789' => 'vma', 'vmacro15790' => 'vma', 'vmacro15806' => 'vma', 'vmacro22907' => 'vma', 'vmacro22908' => 'vma', 'vmacro22909' => 'vma', 'vmacro23108' => 'vma', 'VMungo0540G0540' => 'vmu', 'VMungo0540G2468' => 'vmu', 'VMungo1080G0390' => 'vmu', 'VMungo1080G1165' => 'vmu', 'VMungo1127G0170' => 'vmu', 'VMungo1127G2099' => 'vmu', 'VMungo1215G3013' => 'vmu', 'Zm00001eb013110' => 'zma', 'Zm00001eb084260' => 'zma', 'Zm00001eb096110' => 'zma', 'Zm00001eb217510' => 'zma', 'Zm00001eb322550' => 'zma', 'Zm00001eb390770' => 'zma', 'Zm00001eb397170' => 'zma', 'Zm00001eb404610' => 'zma', 'Zm00001eb421790' => 'zma' ), 'gf_id' => 'HOM05D000911', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000911' ), 'data_identifier' => 'HOM05D000911', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000911', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27780' => 'bna', 'A03p35380' => 'bna', 'A04p21160' => 'bna', 'A05p40570' => 'bna', 'A06p26900' => 'bna', 'A08p33230' => 'bna', 'A09p65960' => 'bna', 'A10p18290' => 'bna', 'Aa31LG1G12990' => 'aar', 'Aa31LG1G2980' => 'aar', 'Aa31LG4G14320' => 'aar', 'Aa31LG7G11800' => 'aar', 'Aa31sc36G50' => 'aar', 'Aa31sc36G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3721' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5459' => 'aag', 'Actinidia03028' => 'ach', 'Actinidia03753' => 'ach', 'Actinidia04187' => 'ach', 'Actinidia05509' => 'ach', 'Actinidia24180' => 'ach', 'Actinidia26906' => 'ach', 'Actinidia37097' => 'ach', 'Actinidia38249' => 'ach', 'Ah.01g003470' => 'amhyb', 'Ah.01g004580' => 'amhyb', 'Ah.01g014850' => 'amhyb', 'Ah.01g016830' => 'amhyb', 'Ah.14g088000' => 'amhyb', 'AL1G22980' => 'aly', 'AL3G18990' => 'aly', 'AL4G22440' => 'aly', 'AL4G33180' => 'aly', 'AL5G22920' => 'aly', 'AL6G33660' => 'aly', 'AL8G20720' => 'aly', 'Aqoxy1G00935' => 'aox', 'Aqoxy1G02094' => 'aox', 'Aqoxy2G01239' => 'aox', 'Aqoxy4G01870' => 'aox', 'Aqoxy7G00450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.36ZVTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71EM27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5D6C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH3WRE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3NCM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RIM768' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YB5YRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z36GDV' => 'arhy', 'AT1G08250' => 'ath', 'AT1G11790' => 'ath', 'AT2G27820' => 'ath', 'AT3G07630' => 'ath', 'AT3G44720' => 'ath', 'AT5G22630' => 'ath', 'ATR0693G304' => 'atr', 'ATR0794G109' => 'atr', 'ATR0820G120' => 'atr', 'ATR1159G064' => 'atr', 'Atru.chr10.2239' => 'acertr', 'Atru.chr3.3371' => 'acertr', 'Atru.chr6.3202' => 'acertr', 'AUR62006499' => 'cqu', 'AUR62012718' => 'cqu', 'AUR62021938' => 'cqu', 'AUR62023932' => 'cqu', 'AUR62025034' => 'cqu', 'AUR62025035' => 'cqu', 'AUR62038307' => 'cqu', 'AUR62043466' => 'cqu', 'BcaB02g10748' => 'bca', 'BcaB03g13231' => 'bca', 'BcaB03g14689' => 'bca', 'BcaB05g22716' => 'bca', 'BcaB06g28172' => 'bca', 'BcaB08g36413' => 'bca', 'BcaC01g02186' => 'bca', 'BcaC01g04272' => 'bca', 'BcaC02g08080' => 'bca', 'BcaC02g08227' => 'bca', 'BcaC03g13901' => 'bca', 'BcaC04g19593' => 'bca', 'BcaC04g20874' => 'bca', 'BcaC05g29557' => 'bca', 'BcaC06g35505' => 'bca', 'BcaC07g41954' => 'bca', 'BcaC07g41955' => 'bca', 'BcaC07g41956' => 'bca', 'BcaC07g42519' => 'bca', 'BcaC07g42520' => 'bca', 'BcaC07g42523' => 'bca', 'BcaC07g42524' => 'bca', 'BcaC07g42525' => 'bca', 'BcaC08g47480' => 'bca', 'BcaC08g47481' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00530' => 'bna', 'BolC2t07178H' => 'bol', 'BolC3t16567H' => 'bol', 'BolC4t27234H' => 'bol', 'BolC5t29728H' => 'bol', 'BolC5t34622H' => 'bol', 'BolC6t40321H' => 'bol', 'BolC7t42028H' => 'bol', 'BolC8t49125H' => 'bol', 'BolC8t52538H' => 'bol', 'BolC8t52539H' => 'bol', 'BolC9t56681H' => 'bol', 'BolC9t58266H' => 'bol', 'BolSC21t60294H' => 'bol', 'BraA02t05670Z' => 'bra', 'BraA03t12716Z' => 'bra', 'BraA04t17685Z' => 'bra', 'BraA05t22788Z' => 'bra', 'BraA06t24032Z' => 'bra', 'BraA06t25625Z' => 'bra', 'BraA07t27930Z' => 'bra', 'BraA08t35242Z' => 'bra', 'BraA09t38609Z' => 'bra', 'BraA10t43905Z' => 'bra', 'C02p11060' => 'bna', 'C03p42990' => 'bna', 'C03p67310' => 'bna', 'C04p56990' => 'bna', 'C04p58660' => 'bna', 'C05p09890' => 'bna', 'C05p59680' => 'bna', 'C06p19830' => 'bna', 'C06p53040' => 'bna', 'C07p15230' => 'bna', 'C08p50070' => 'bna', 'C08p50090' => 'bna', 'C09p38330' => 'bna', 'C09p53940' => 'bna', 'CAN.G1014.1' => 'can', 'CAN.G644.30' => 'can', 'CAN.G84.47' => 'can', 'CAN.G919.8' => 'can', 'CANSAT54G0113' => 'cansat', 'CANSAT54G1286' => 'cansat', 'CANSAT64G1020' => 'cansat', 'CARHR008080' => 'chi', 'CARHR008090' => 'chi', 'CARHR012130' => 'chi', 'CARHR038390' => 'chi', 'CARHR082330' => 'chi', 'CARHR120520' => 'chi', 'CARHR151470' => 'chi', 'CARHR190950' => 'chi', 'Carub.0001s0760' => 'cru', 'Carub.0001s1146' => 'cru', 'Carub.0003s0721' => 'cru', 'Carub.0004s0858' => 'cru', 'Carub.0005s1040' => 'cru', 'Carub.0006s2035' => 'cru', 'Carub.0015s0005' => 'cru', 'Ca_01607_v3' => 'car', 'Ca_01677_v3' => 'car', 'Ca_06087_v3' => 'car', 'Ca_19238_v3' => 'car', 'Ca_19373_v3' => 'car', 'Ca_21079_v3' => 'car', 'CBR_g54016' => 'cbr', 'CBR_g54018' => 'cbr', 'CBR_g54020' => 'cbr', 'Cc01_g09780' => 'ccan', 'Cc01_g11680' => 'ccan', 'Cc02_g15610' => 'ccan', 'Cc05_g04350' => 'ccan', 'Cc09_g01580' => 'ccan', 'CDE01G0795' => 'cde', 'CDE02G2024' => 'cde', 'CDE02G2260' => 'cde', 'CDE02G4561' => 'cde', 'CDE05G2733' => 'cde', 'CDE05G3422' => 'cde', 'CDE06G2003' => 'cde', 'CDE08G0576' => 'cde', 'CDE09G0048' => 'cde', 'CDE11G0805' => 'cde', 'Cfa003644' => 'cfa', 'Cfa006290' => 'cfa', 'Cfa010080' => 'cfa', 'Cfa011376' => 'cfa', 'Cfa011576' => 'cfa', 'Cfa011577' => 'cfa', 'Cfa014389' => 'cfa', 'Ciclev10006044m.g' => 'ccl', 'Ciclev10006954m.g' => 'ccl', 'Ciclev10015131m.g' => 'ccl', 'Ciclev10015580m.g' => 'ccl', 'Ciclev10028359m.g' => 'ccl', 'Ciclev10028573m.g' => 'ccl', 'CiPaw.03G159300' => 'cil', 'CiPaw.04G115100' => 'cil', 'CiPaw.09G092800' => 'cil', 'CiPaw.10G071800' => 'cil', 'CiPaw.13G105800' => 'cil', 'CiPaw.13G141000' => 'cil', 'CiPaw.14G103400' => 'cil', 'ClCG01G012700' => 'cla', 'ClCG01G012720' => 'cla', 'ClCG01G021920' => 'cla', 'ClCG02G008870' => 'cla', 'ClCG02G020840' => 'cla', 'ClCG02G021930' => 'cla', 'COL.COLO4_19302' => 'col', 'COL.COLO4_25262' => 'col', 'COL.COLO4_31788' => 'col', 'Cpa.g.c34684' => 'cpa', 'Cpa.g.c36520.1' => 'cpa', 'Cpa.g.c45626' => 'cpa', 'Cpa.g.sc121.17' => 'cpa', 'Cpa.g.sc13.22' => 'cpa', 'Cpa.g.sc87.88' => 'cpa', 'Cre06.g261800' => 'cre', 'CsaV3_1G014500' => 'csa', 'CsaV3_1G014510' => 'csa', 'CsaV3_2G034880' => 'csa', 'CsaV3_6G014760' => 'csa', 'CsaV3_6G021500' => 'csa', 'CsaV3_6G048980' => 'csa', 'CSS0002511' => 'camsi', 'CSS0007556' => 'camsi', 'CSS0008532' => 'camsi', 'CSS0009709' => 'camsi', 'CSS0010486' => 'camsi', 'CSS0016768' => 'camsi', 'CSS0023512' => 'camsi', 'CSS0025341' => 'camsi', 'CSS0027999' => 'camsi', 'CSS0028944' => 'camsi', 'CSS0032292' => 'camsi', 'CSS0032464' => 'camsi', 'CSS0037153' => 'camsi', 'CSS0039256' => 'camsi', 'CSS0048392' => 'camsi', 'CSS0050458' => 'camsi', 'DCAR_004224' => 'dca', 'DCAR_006147' => 'dca', 'DCAR_006465' => 'dca', 'DCAR_008159' => 'dca', 'DCAR_012164' => 'dca', 'DCAR_019764' => 'dca', 'Dinv05418' => 'din', 'Dinv10839' => 'din', 'Dinv12521' => 'din', 'Dinv13900' => 'din', 'Dinv29426' => 'din', 'Duzib150G0263' => 'dzi', 'Duzib168G1178' => 'dzi', 'Duzib168G1924' => 'dzi', 'Duzib170G0299' => 'dzi', 'Duzib170G0813' => 'dzi', 'Duzib235G1128' => 'dzi', 'Duzib248G1060' => 'dzi', 'ECA232G1910' => 'eca', 'ECA233G4621' => 'eca', 'ECA238G1216' => 'eca', 'ECA238G1784' => 'eca', 'ECA248G1242' => 'eca', 'EL10Ac8g20071' => 'bvu', 'EL10Ac9g21086' => 'bvu', 'EL10Ac9g22407' => 'bvu', 'EL10Ac9g22412' => 'bvu', 'Eucgr.A01119' => 'egr', 'Eucgr.E04043' => 'egr', 'Eucgr.J00428' => 'egr', 'Eucgr.J00958' => 'egr', 'FAN11G3091' => 'fan', 'FAN11G3651' => 'fan', 'FAN16G2566' => 'fan', 'FAN21G3155' => 'fan', 'FAN21G3400' => 'fan', 'FAN21G3543' => 'fan', 'FAN25G0234' => 'fan', 'FAN25G1422' => 'fan', 'FAN25G3392' => 'fan', 'FvH4_3g01940' => 'fve', 'FvH4_3g29870' => 'fve', 'FvH4_3g33680' => 'fve', 'Glyma.09G004200' => 'gma', 'Glyma.11G151288' => 'gma', 'Glyma.11G189100' => 'gma', 'Glyma.12G072500' => 'gma', 'Glyma.12G085500' => 'gma', 'Glyma.12G181800' => 'gma', 'Glyma.12G193000' => 'gma', 'Glyma.13G309300' => 'gma', 'Glyma.13G319000' => 'gma', 'Glyma.17G012600' => 'gma', 'Gohir.A06G148600' => 'ghi', 'Gohir.A07G115800' => 'ghi', 'Gohir.A08G003600' => 'ghi', 'Gohir.A09G093300' => 'ghi', 'Gohir.A09G105400' => 'ghi', 'Gohir.A09G105500' => 'ghi', 'Gohir.D06G154600' => 'ghi', 'Gohir.D07G120200' => 'ghi', 'Gohir.D08G013900' => 'ghi', 'Gohir.D09G093100' => 'ghi', 'Gohir.D09G102200' => 'ghi', 'Gohir.D09G102300' => 'ghi', 'Gorai.001G129400' => 'gra', 'Gorai.004G008200' => 'gra', 'Gorai.006G109800' => 'gra', 'Gorai.006G119500' => 'gra', 'Gorai.006G121300' => 'gra', 'Gorai.010G180700' => 'gra', 'GSVIVG01012716001' => 'vvi', 'GSVIVG01025118001' => 'vvi', 'GSVIVG01030439001' => 'vvi', 'GSVIVG01031397001' => 'vvi', 'HanXRQChr01g0004201' => 'han', 'HanXRQChr02g0054941' => 'han', 'HanXRQChr05g0141811' => 'han', 'HanXRQChr07g0197751' => 'han', 'HanXRQChr11g0346691' => 'han', 'HanXRQChr13g0396971' => 'han', 'HanXRQChr14g0432951' => 'han', 'HanXRQChr14g0452001' => 'han', 'HanXRQChr15g0496681' => 'han', 'HanXRQChr17g0557491' => 'han', 'HanXRQChr17g0557501' => 'han', 'Haze_06809' => 'cav', 'Haze_12852' => 'cav', 'Haze_15850' => 'cav', 'Haze_23446' => 'cav', 'Haze_23942' => 'cav', 'Haze_23943' => 'cav', 'Hma1.2p1_0091F.1_g046450' => 'hma', 'Hma1.2p1_0128F.1_g059910' => 'hma', 'Hma1.2p1_0249F.1_g102260' => 'hma', 'Hma1.2p1_0453F.1_g156190' => 'hma', 'Hma1.2p1_0695F.1_g204380' => 'hma', 'Hma1.2p1_0749F.1_g212650' => 'hma', 'Hma1.2p1_2156F.1_g315420' => 'hma', 'Hma1.2p1_2686F.1_g326940' => 'hma', 'HPP92_006428' => 'vpl', 'HPP92_012069' => 'vpl', 'HPP92_014129' => 'vpl', 'HPP92_014133' => 'vpl', 'HPP92_017315' => 'vpl', 'HPP92_026445' => 'vpl', 'HPP92_026446' => 'vpl', 'Hund00774' => 'sun', 'Hund07682' => 'sun', 'Hund21413' => 'sun', 'Hund23462' => 'sun', 'Hund23463' => 'sun', 'Lalb_Chr03g0027911' => 'lal', 'Lalb_Chr13g0304271' => 'lal', 'Lalb_Chr19g0137471' => 'lal', 'Lalb_Chr22g0350651' => 'lal', 'Lalb_Chr24g0395151' => 'lal', 'Lj1A1231T40' => 'lonja', 'Lj1A221T48' => 'lonja', 'Lj1C924T12' => 'lonja', 'Lj2C993G6' => 'lonja', 'Lj3g0005790' => 'lja', 'Lj3g0015432' => 'lja', 'Lj3g0017722' => 'lja', 'Lj3g0018497' => 'lja', 'Lj4g0025071' => 'lja', 'Lsat_1_v5_gn_1_129680' => 'lsa', 'Lsat_1_v5_gn_2_25321' => 'lsa', 'Lsat_1_v5_gn_2_95461' => 'lsa', 'Lsat_1_v5_gn_4_159620' => 'lsa', 'Lsat_1_v5_gn_6_41301' => 'lsa', 'Lsat_1_v5_gn_6_74660' => 'lsa', 'Lsat_1_v5_gn_7_11520' => 'lsa', 'Lsat_1_v5_gn_9_67680' => 'lsa', 'Manes.04G008300' => 'mes', 'Manes.04G008400' => 'mes', 'Manes.04G026500' => 'mes', 'Manes.10G135300' => 'mes', 'Manes.11G157300' => 'mes', 'Manes.12G074000' => 'mes', 'Manes.16G006200' => 'mes', 'Manes.17G026400' => 'mes', 'Mapoly0024s0086' => 'mpo', 'Mapoly0024s0087' => 'mpo', 'Mapoly0071s0057' => 'mpo', 'Mapoly0204s0012' => 'mpo', 'MBI04_g37681_MAGBIO' => 'mbi', 'MBI05_g17779_MAGBIO' => 'mbi', 'MBI12_g31184_MAGBIO' => 'mbi', 'MBI17_g11083_MAGBIO' => 'mbi', 'MBI18_g03883_MAGBIO' => 'mbi', 'MBI18_g28940_MAGBIO' => 'mbi', 'MCO01G690' => 'mco', 'MD03G1109900' => 'mdo', 'MD03G1134800' => 'mdo', 'MD05G1348000' => 'mdo', 'MD10G1322400' => 'mdo', 'MD11G1123300' => 'mdo', 'MD11G1157600' => 'mdo', 'Medtr2g084875' => 'mtr', 'Medtr2g088130' => 'mtr', 'Medtr4g055310' => 'mtr', 'Medtr4g061070' => 'mtr', 'Medtr4g132250' => 'mtr', 'MELO3C004795.2' => 'cme', 'MELO3C004797.2' => 'cme', 'MELO3C007396.2' => 'cme', 'MELO3C019277.2' => 'cme', 'MELO3C021449.2' => 'cme', 'MELO3C025736.2' => 'cme', 'Migut.D02175' => 'egut', 'Migut.H01573' => 'egut', 'Migut.M01327' => 'egut', 'Migut.N02513' => 'egut', 'MSTRG.14638' => 'ama', 'MSTRG.18632' => 'ama', 'MSTRG.7203' => 'ama', 'Nitab4.5_0000533g0140' => 'nta', 'Nitab4.5_0000888g0150' => 'nta', 'Nitab4.5_0001453g0040' => 'nta', 'Nitab4.5_0002827g0090' => 'nta', 'Nitab4.5_0003082g0040' => 'nta', 'Nitab4.5_0007799g0040' => 'nta', 'Nitab4.5_0008983g0010' => 'nta', 'Nitab4.5_0009017g0020' => 'nta', 'Nn1g02132' => 'nnu', 'Nn1g03492' => 'nnu', 'Nn1g03493' => 'nnu', 'Nn1g03494' => 'nnu', 'Nn1g07164' => 'nnu', 'Nn1g07291' => 'nnu', 'Nn2g10655' => 'nnu', 'Nn2g11652' => 'nnu', 'Nn2g14008' => 'nnu', 'Nn3g17476' => 'nnu', 'Nn3g17477' => 'nnu', 'Nn4g22370' => 'nnu', 'Nn4g25255' => 'nnu', 'Nn5g27755' => 'nnu', 'Nn6g34260' => 'nnu', 'Nn6g35041' => 'nnu', 'Oeu005924.1' => 'oeu', 'Oeu008383.1' => 'oeu', 'Oeu014928.1' => 'oeu', 'Oeu019889.1' => 'oeu', 'Oeu022271.1' => 'oeu', 'Oeu025271.1' => 'oeu', 'Oeu036302.1' => 'oeu', 'Oeu044100.1' => 'oeu', 'Os01g0528300' => 'osa', 'Os03g0286200' => 'osa', 'Os04g0406600' => 'osa', 'Os07g0512000' => 'osa', 'Os07g0694600' => 'osa', 'Os08g0411000' => 'osa', 'Os09g0565700' => 'osa', 'Os09g0566050' => 'osa', 'Os10g0523700' => 'osa', 'Peaxi162Scf00002g00514' => 'pax', 'Peaxi162Scf00047g01817' => 'pax', 'Peaxi162Scf00114g00001' => 'pax', 'Peaxi162Scf00147g00613' => 'pax', 'Peaxi162Scf00389g00425' => 'pax', 'PGR042G1139' => 'pgr', 'PGR042G3273' => 'pgr', 'PGR102G2180' => 'pgr', 'PGR119G0234' => 'pgr', 'PGR119G0668' => 'pgr', 'PGSC0003DMG400007122' => 'stu', 'PGSC0003DMG400016478' => 'stu', 'PGSC0003DMG400025374' => 'stu', 'PGSC0003DMG400026536' => 'stu', 'Phvul.003G079600' => 'pvu', 'Phvul.005G115600' => 'pvu', 'Phvul.005G127100' => 'pvu', 'Phvul.006G149500' => 'pvu', 'Phvul.006G149600' => 'pvu', 'Phvul.011G071800' => 'pvu', 'Phvul.011G090400' => 'pvu', 'Potri.004G013400' => 'ptr', 'Potri.004G188100' => 'ptr', 'Potri.008G195500' => 'ptr', 'Potri.009G148800' => 'ptr', 'Potri.011G004700' => 'ptr', 'Pp3c17_22810' => 'ppa', 'Pp3c18_4480' => 'ppa', 'Pp3c19_13030' => 'ppa', 'Pp3c1_33620' => 'ppa', 'Pp3c2_9380' => 'ppa', 'PRCOL_00001023' => 'pco', 'Prupe.3G216300' => 'ppe', 'Prupe.4G019500' => 'ppe', 'Prupe.6G092500' => 'ppe', 'Prupe.6G119200' => 'ppe', 'Psat0s1945g0080' => 'psa', 'Psat0s4167g0040' => 'psa', 'Psat1g185800' => 'psa', 'Psat4g006440' => 'psa', 'Psat4g006480' => 'psa', 'Psat4g168120' => 'psa', 'Psat5g255680' => 'psa', 'Psat5g261760' => 'psa', 'Psat7g222120' => 'psa', 'PSO063G7252' => 'pso', 'PSO170G4778' => 'pso', 'PSO210G2249' => 'pso', 'PSO339G2411' => 'pso', 'PSO339G2457' => 'pso', 'PSO339G2854' => 'pso', 'PSO339G4288' => 'pso', 'PSO339G4615' => 'pso', 'PSO384G2796' => 'pso', 'PSO384G2940' => 'pso', 'PSO384G4227' => 'pso', 'PSO478G1425' => 'pso', 'PSO541G3863' => 'pso', 'PSO675G0507' => 'pso', 'PSO782G0338' => 'pso', 'PSO832G0644' => 'pso', 'QL01p013664' => 'qlo', 'QL01p036598' => 'qlo', 'QL05p072984' => 'qlo', 'QL08p005768' => 'qlo', 'QL08p032743' => 'qlo', 'QL93p0073_0439' => 'qlo', 'QL93p0073_0444' => 'qlo', 'RcHm_v2.0_Chr5g0002851' => 'rch', 'RcHm_v2.0_Chr5g0055201' => 'rch', 'RcHm_v2.0_Chr5g0061191' => 'rch', 'RcHm_v2.0_Chr7g0203231' => 'rch', 'Rhsim01G0208100' => 'rsi', 'Rhsim01G0208200' => 'rsi', 'Rhsim02G0106500' => 'rsi', 'Rhsim03G0107900' => 'rsi', 'Rhsim06G0163400' => 'rsi', 'Rhsim13G0105200' => 'rsi', 'Sabra04G0006300' => 'sbr', 'Sabra04G0127000' => 'sbr', 'Sabra08G0148700' => 'sbr', 'Sabra09G0117400' => 'sbr', 'SalBow1G3326' => 'sbo', 'SalBow3G3228' => 'sbo', 'SalBow6G1634' => 'sbo', 'SalBow6G3603' => 'sbo', 'SalBow6G5266' => 'sbo', 'SalBow7G2265' => 'sbo', 'SalBow8G0850' => 'sbo', 'SalBow8G2592' => 'sbo', 'Sc05g0009240' => 'sci', 'Sc12g0002300' => 'sci', 'Sc21g0000100' => 'sci', 'Sc21g0004720' => 'sci', 'Sed0002949' => 'sed', 'Sed0004114' => 'sed', 'Sed0004306' => 'sed', 'Sed0006172' => 'sed', 'Sed0008413' => 'sed', 'Sed0013809' => 'sed', 'Sed0019556' => 'sed', 'SEGI_03570' => 'sgi', 'SEGI_07859' => 'sgi', 'SEGI_15042' => 'sgi', 'SEGI_16263' => 'sgi', 'SEGI_16552' => 'sgi', 'SEGI_24331' => 'sgi', 'SEGI_27316' => 'sgi', 'SEGI_29521' => 'sgi', 'SEGI_41342' => 'sgi', 'SGA_v2.0_scaffold27G11617' => 'sas', 'SGA_v2.0_scaffold316G48428' => 'sas', 'SGA_v2.0_scaffold49G18261' => 'sas', 'SGA_v2.0_scaffold7G03831' => 'sas', 'SGA_v2.0_scaffold93G28359' => 'sas', 'SHI02210' => 'shi', 'SHI06028' => 'shi', 'SHI06321' => 'shi', 'SMO111G0012' => 'smo', 'SMO228G0080' => 'smo', 'SMO356G0756' => 'smo', 'Solyc02g080620.3' => 'sly', 'Solyc06g074530.1' => 'sly', 'Solyc11g066890.1' => 'sly', 'Solyc11g072520.3' => 'sly', 'Sopen02g025330' => 'spe', 'Sopen06g031000' => 'spe', 'Sopen09g008240' => 'spe', 'Sopen09g025210' => 'spe', 'Sopen11g026600' => 'spe', 'Sopen11g030170' => 'spe', 'Sp1g10420' => 'spa', 'Sp3g06570' => 'spa', 'Sp4g10660' => 'spa', 'Sp5g16460' => 'spa', 'Sp6g22710' => 'spa', 'TAR365G0112' => 'tar', 'TAR369G0717' => 'tar', 'TAR374G0976' => 'tar', 'TAR623G1128' => 'tar', 'TAR626G1937' => 'tar', 'TAR627G0123' => 'tar', 'TAR628G0305' => 'tar', 'TAR636G1176' => 'tar', 'TAR636G2442' => 'tar', 'THA.LOC104800556' => 'tha', 'THA.LOC104809501' => 'tha', 'THA.LOC104815126' => 'tha', 'THA.LOC104815732' => 'tha', 'THA.LOC104823528' => 'tha', 'Thecc.02G365600' => 'tca', 'Thecc.06G222300' => 'tca', 'Thecc.09G261800' => 'tca', 'Thecc.09G291400' => 'tca', 'Thhalv10003028m.g' => 'esa', 'Thhalv10007886m.g' => 'esa', 'Thhalv10016085m.g' => 'esa', 'Thhalv10016681m.g' => 'esa', 'Thhalv10020951m.g' => 'esa', 'TPR.G15598' => 'tpr', 'TPR.G29305' => 'tpr', 'TPR.G32395' => 'tpr', 'TPR.G36998' => 'tpr', 'TPR.G4227' => 'tpr', 'TWI18G1433' => 'twi', 'TWI31G0755' => 'twi', 'TWI38G0912' => 'twi', 'TWI75G1097' => 'twi', 'TWI75G1619' => 'twi', 'TWI79G1336' => 'twi', 'unitig_0.g943' => 'ugi', 'unitig_0.g944' => 'ugi', 'unitig_22.g6646' => 'ugi', 'unitig_37.g12681' => 'ugi', 'unitig_8.g3290' => 'ugi', 'vmacro03278' => 'vma', 'vmacro12197' => 'vma', 'vmacro14478' => 'vma', 'vmacro15787' => 'vma', 'vmacro15789' => 'vma', 'vmacro15790' => 'vma', 'vmacro15806' => 'vma', 'vmacro22907' => 'vma', 'vmacro22908' => 'vma', 'vmacro22909' => 'vma', 'vmacro23108' => 'vma', 'VMungo0540G0540' => 'vmu', 'VMungo0540G2468' => 'vmu', 'VMungo1080G0390' => 'vmu', 'VMungo1080G1165' => 'vmu', 'VMungo1127G0170' => 'vmu', 'VMungo1127G2099' => 'vmu', 'VMungo1215G3013' => 'vmu', 'Zm00001eb013110' => 'zma', 'Zm00001eb084260' => 'zma', 'Zm00001eb096110' => 'zma', 'Zm00001eb217510' => 'zma', 'Zm00001eb322550' => 'zma', 'Zm00001eb390770' => 'zma', 'Zm00001eb397170' => 'zma', 'Zm00001eb404610' => 'zma', 'Zm00001eb421790' => 'zma' ) $gf_id = 'HOM05D000911' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000911' ) $data_identifier = 'HOM05D000911' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 16, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 5, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 6, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 8, 'nnu' => (int) 16, 'oeu' => (int) 8, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 5, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 16, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421790' $species_info = array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ) $local_species = 'mco' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000911', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27780' => 'bna', 'A03p35380' => 'bna', 'A04p21160' => 'bna', 'A05p40570' => 'bna', 'A06p26900' => 'bna', 'A08p33230' => 'bna', 'A09p65960' => 'bna', 'A10p18290' => 'bna', 'Aa31LG1G12990' => 'aar', 'Aa31LG1G2980' => 'aar', 'Aa31LG4G14320' => 'aar', 'Aa31LG7G11800' => 'aar', 'Aa31sc36G50' => 'aar', 'Aa31sc36G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3721' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5459' => 'aag', 'Actinidia03028' => 'ach', 'Actinidia03753' => 'ach', 'Actinidia04187' => 'ach', 'Actinidia05509' => 'ach', 'Actinidia24180' => 'ach', 'Actinidia26906' => 'ach', 'Actinidia37097' => 'ach', 'Actinidia38249' => 'ach', 'Ah.01g003470' => 'amhyb', 'Ah.01g004580' => 'amhyb', 'Ah.01g014850' => 'amhyb', 'Ah.01g016830' => 'amhyb', 'Ah.14g088000' => 'amhyb', 'AL1G22980' => 'aly', 'AL3G18990' => 'aly', 'AL4G22440' => 'aly', 'AL4G33180' => 'aly', 'AL5G22920' => 'aly', 'AL6G33660' => 'aly', 'AL8G20720' => 'aly', 'Aqoxy1G00935' => 'aox', 'Aqoxy1G02094' => 'aox', 'Aqoxy2G01239' => 'aox', 'Aqoxy4G01870' => 'aox', 'Aqoxy7G00450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.36ZVTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71EM27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5D6C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH3WRE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3NCM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RIM768' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YB5YRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z36GDV' => 'arhy', 'AT1G08250' => 'ath', 'AT1G11790' => 'ath', 'AT2G27820' => 'ath', 'AT3G07630' => 'ath', 'AT3G44720' => 'ath', 'AT5G22630' => 'ath', 'ATR0693G304' => 'atr', 'ATR0794G109' => 'atr', 'ATR0820G120' => 'atr', 'ATR1159G064' => 'atr', 'Atru.chr10.2239' => 'acertr', 'Atru.chr3.3371' => 'acertr', 'Atru.chr6.3202' => 'acertr', 'AUR62006499' => 'cqu', 'AUR62012718' => 'cqu', 'AUR62021938' => 'cqu', 'AUR62023932' => 'cqu', 'AUR62025034' => 'cqu', 'AUR62025035' => 'cqu', 'AUR62038307' => 'cqu', 'AUR62043466' => 'cqu', 'BcaB02g10748' => 'bca', 'BcaB03g13231' => 'bca', 'BcaB03g14689' => 'bca', 'BcaB05g22716' => 'bca', 'BcaB06g28172' => 'bca', 'BcaB08g36413' => 'bca', 'BcaC01g02186' => 'bca', 'BcaC01g04272' => 'bca', 'BcaC02g08080' => 'bca', 'BcaC02g08227' => 'bca', 'BcaC03g13901' => 'bca', 'BcaC04g19593' => 'bca', 'BcaC04g20874' => 'bca', 'BcaC05g29557' => 'bca', 'BcaC06g35505' => 'bca', 'BcaC07g41954' => 'bca', 'BcaC07g41955' => 'bca', 'BcaC07g41956' => 'bca', 'BcaC07g42519' => 'bca', 'BcaC07g42520' => 'bca', 'BcaC07g42523' => 'bca', 'BcaC07g42524' => 'bca', 'BcaC07g42525' => 'bca', 'BcaC08g47480' => 'bca', 'BcaC08g47481' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00530' => 'bna', 'BolC2t07178H' => 'bol', 'BolC3t16567H' => 'bol', 'BolC4t27234H' => 'bol', 'BolC5t29728H' => 'bol', 'BolC5t34622H' => 'bol', 'BolC6t40321H' => 'bol', 'BolC7t42028H' => 'bol', 'BolC8t49125H' => 'bol', 'BolC8t52538H' => 'bol', 'BolC8t52539H' => 'bol', 'BolC9t56681H' => 'bol', 'BolC9t58266H' => 'bol', 'BolSC21t60294H' => 'bol', 'BraA02t05670Z' => 'bra', 'BraA03t12716Z' => 'bra', 'BraA04t17685Z' => 'bra', 'BraA05t22788Z' => 'bra', 'BraA06t24032Z' => 'bra', 'BraA06t25625Z' => 'bra', 'BraA07t27930Z' => 'bra', 'BraA08t35242Z' => 'bra', 'BraA09t38609Z' => 'bra', 'BraA10t43905Z' => 'bra', 'C02p11060' => 'bna', 'C03p42990' => 'bna', 'C03p67310' => 'bna', 'C04p56990' => 'bna', 'C04p58660' => 'bna', 'C05p09890' => 'bna', 'C05p59680' => 'bna', 'C06p19830' => 'bna', 'C06p53040' => 'bna', 'C07p15230' => 'bna', 'C08p50070' => 'bna', 'C08p50090' => 'bna', 'C09p38330' => 'bna', 'C09p53940' => 'bna', 'CAN.G1014.1' => 'can', 'CAN.G644.30' => 'can', 'CAN.G84.47' => 'can', 'CAN.G919.8' => 'can', 'CANSAT54G0113' => 'cansat', 'CANSAT54G1286' => 'cansat', 'CANSAT64G1020' => 'cansat', 'CARHR008080' => 'chi', 'CARHR008090' => 'chi', 'CARHR012130' => 'chi', 'CARHR038390' => 'chi', 'CARHR082330' => 'chi', 'CARHR120520' => 'chi', 'CARHR151470' => 'chi', 'CARHR190950' => 'chi', 'Carub.0001s0760' => 'cru', 'Carub.0001s1146' => 'cru', 'Carub.0003s0721' => 'cru', 'Carub.0004s0858' => 'cru', 'Carub.0005s1040' => 'cru', 'Carub.0006s2035' => 'cru', 'Carub.0015s0005' => 'cru', 'Ca_01607_v3' => 'car', 'Ca_01677_v3' => 'car', 'Ca_06087_v3' => 'car', 'Ca_19238_v3' => 'car', 'Ca_19373_v3' => 'car', 'Ca_21079_v3' => 'car', 'CBR_g54016' => 'cbr', 'CBR_g54018' => 'cbr', 'CBR_g54020' => 'cbr', 'Cc01_g09780' => 'ccan', 'Cc01_g11680' => 'ccan', 'Cc02_g15610' => 'ccan', 'Cc05_g04350' => 'ccan', 'Cc09_g01580' => 'ccan', 'CDE01G0795' => 'cde', 'CDE02G2024' => 'cde', 'CDE02G2260' => 'cde', 'CDE02G4561' => 'cde', 'CDE05G2733' => 'cde', 'CDE05G3422' => 'cde', 'CDE06G2003' => 'cde', 'CDE08G0576' => 'cde', 'CDE09G0048' => 'cde', 'CDE11G0805' => 'cde', 'Cfa003644' => 'cfa', 'Cfa006290' => 'cfa', 'Cfa010080' => 'cfa', 'Cfa011376' => 'cfa', 'Cfa011576' => 'cfa', 'Cfa011577' => 'cfa', 'Cfa014389' => 'cfa', 'Ciclev10006044m.g' => 'ccl', 'Ciclev10006954m.g' => 'ccl', 'Ciclev10015131m.g' => 'ccl', 'Ciclev10015580m.g' => 'ccl', 'Ciclev10028359m.g' => 'ccl', 'Ciclev10028573m.g' => 'ccl', 'CiPaw.03G159300' => 'cil', 'CiPaw.04G115100' => 'cil', 'CiPaw.09G092800' => 'cil', 'CiPaw.10G071800' => 'cil', 'CiPaw.13G105800' => 'cil', 'CiPaw.13G141000' => 'cil', 'CiPaw.14G103400' => 'cil', 'ClCG01G012700' => 'cla', 'ClCG01G012720' => 'cla', 'ClCG01G021920' => 'cla', 'ClCG02G008870' => 'cla', 'ClCG02G020840' => 'cla', 'ClCG02G021930' => 'cla', 'COL.COLO4_19302' => 'col', 'COL.COLO4_25262' => 'col', 'COL.COLO4_31788' => 'col', 'Cpa.g.c34684' => 'cpa', 'Cpa.g.c36520.1' => 'cpa', 'Cpa.g.c45626' => 'cpa', 'Cpa.g.sc121.17' => 'cpa', 'Cpa.g.sc13.22' => 'cpa', 'Cpa.g.sc87.88' => 'cpa', 'Cre06.g261800' => 'cre', 'CsaV3_1G014500' => 'csa', 'CsaV3_1G014510' => 'csa', 'CsaV3_2G034880' => 'csa', 'CsaV3_6G014760' => 'csa', 'CsaV3_6G021500' => 'csa', 'CsaV3_6G048980' => 'csa', 'CSS0002511' => 'camsi', 'CSS0007556' => 'camsi', 'CSS0008532' => 'camsi', 'CSS0009709' => 'camsi', 'CSS0010486' => 'camsi', 'CSS0016768' => 'camsi', 'CSS0023512' => 'camsi', 'CSS0025341' => 'camsi', 'CSS0027999' => 'camsi', 'CSS0028944' => 'camsi', 'CSS0032292' => 'camsi', 'CSS0032464' => 'camsi', 'CSS0037153' => 'camsi', 'CSS0039256' => 'camsi', 'CSS0048392' => 'camsi', 'CSS0050458' => 'camsi', 'DCAR_004224' => 'dca', 'DCAR_006147' => 'dca', 'DCAR_006465' => 'dca', 'DCAR_008159' => 'dca', 'DCAR_012164' => 'dca', 'DCAR_019764' => 'dca', 'Dinv05418' => 'din', 'Dinv10839' => 'din', 'Dinv12521' => 'din', 'Dinv13900' => 'din', 'Dinv29426' => 'din', 'Duzib150G0263' => 'dzi', 'Duzib168G1178' => 'dzi', 'Duzib168G1924' => 'dzi', 'Duzib170G0299' => 'dzi', 'Duzib170G0813' => 'dzi', 'Duzib235G1128' => 'dzi', 'Duzib248G1060' => 'dzi', 'ECA232G1910' => 'eca', 'ECA233G4621' => 'eca', 'ECA238G1216' => 'eca', 'ECA238G1784' => 'eca', 'ECA248G1242' => 'eca', 'EL10Ac8g20071' => 'bvu', 'EL10Ac9g21086' => 'bvu', 'EL10Ac9g22407' => 'bvu', 'EL10Ac9g22412' => 'bvu', 'Eucgr.A01119' => 'egr', 'Eucgr.E04043' => 'egr', 'Eucgr.J00428' => 'egr', 'Eucgr.J00958' => 'egr', 'FAN11G3091' => 'fan', 'FAN11G3651' => 'fan', 'FAN16G2566' => 'fan', 'FAN21G3155' => 'fan', 'FAN21G3400' => 'fan', 'FAN21G3543' => 'fan', 'FAN25G0234' => 'fan', 'FAN25G1422' => 'fan', 'FAN25G3392' => 'fan', 'FvH4_3g01940' => 'fve', 'FvH4_3g29870' => 'fve', 'FvH4_3g33680' => 'fve', 'Glyma.09G004200' => 'gma', 'Glyma.11G151288' => 'gma', 'Glyma.11G189100' => 'gma', 'Glyma.12G072500' => 'gma', 'Glyma.12G085500' => 'gma', 'Glyma.12G181800' => 'gma', 'Glyma.12G193000' => 'gma', 'Glyma.13G309300' => 'gma', 'Glyma.13G319000' => 'gma', 'Glyma.17G012600' => 'gma', 'Gohir.A06G148600' => 'ghi', 'Gohir.A07G115800' => 'ghi', 'Gohir.A08G003600' => 'ghi', 'Gohir.A09G093300' => 'ghi', 'Gohir.A09G105400' => 'ghi', 'Gohir.A09G105500' => 'ghi', 'Gohir.D06G154600' => 'ghi', 'Gohir.D07G120200' => 'ghi', 'Gohir.D08G013900' => 'ghi', 'Gohir.D09G093100' => 'ghi', 'Gohir.D09G102200' => 'ghi', 'Gohir.D09G102300' => 'ghi', 'Gorai.001G129400' => 'gra', 'Gorai.004G008200' => 'gra', 'Gorai.006G109800' => 'gra', 'Gorai.006G119500' => 'gra', 'Gorai.006G121300' => 'gra', 'Gorai.010G180700' => 'gra', 'GSVIVG01012716001' => 'vvi', 'GSVIVG01025118001' => 'vvi', 'GSVIVG01030439001' => 'vvi', 'GSVIVG01031397001' => 'vvi', 'HanXRQChr01g0004201' => 'han', 'HanXRQChr02g0054941' => 'han', 'HanXRQChr05g0141811' => 'han', 'HanXRQChr07g0197751' => 'han', 'HanXRQChr11g0346691' => 'han', 'HanXRQChr13g0396971' => 'han', 'HanXRQChr14g0432951' => 'han', 'HanXRQChr14g0452001' => 'han', 'HanXRQChr15g0496681' => 'han', 'HanXRQChr17g0557491' => 'han', 'HanXRQChr17g0557501' => 'han', 'Haze_06809' => 'cav', 'Haze_12852' => 'cav', 'Haze_15850' => 'cav', 'Haze_23446' => 'cav', 'Haze_23942' => 'cav', 'Haze_23943' => 'cav', 'Hma1.2p1_0091F.1_g046450' => 'hma', 'Hma1.2p1_0128F.1_g059910' => 'hma', 'Hma1.2p1_0249F.1_g102260' => 'hma', 'Hma1.2p1_0453F.1_g156190' => 'hma', 'Hma1.2p1_0695F.1_g204380' => 'hma', 'Hma1.2p1_0749F.1_g212650' => 'hma', 'Hma1.2p1_2156F.1_g315420' => 'hma', 'Hma1.2p1_2686F.1_g326940' => 'hma', 'HPP92_006428' => 'vpl', 'HPP92_012069' => 'vpl', 'HPP92_014129' => 'vpl', 'HPP92_014133' => 'vpl', 'HPP92_017315' => 'vpl', 'HPP92_026445' => 'vpl', 'HPP92_026446' => 'vpl', 'Hund00774' => 'sun', 'Hund07682' => 'sun', 'Hund21413' => 'sun', 'Hund23462' => 'sun', 'Hund23463' => 'sun', 'Lalb_Chr03g0027911' => 'lal', 'Lalb_Chr13g0304271' => 'lal', 'Lalb_Chr19g0137471' => 'lal', 'Lalb_Chr22g0350651' => 'lal', 'Lalb_Chr24g0395151' => 'lal', 'Lj1A1231T40' => 'lonja', 'Lj1A221T48' => 'lonja', 'Lj1C924T12' => 'lonja', 'Lj2C993G6' => 'lonja', 'Lj3g0005790' => 'lja', 'Lj3g0015432' => 'lja', 'Lj3g0017722' => 'lja', 'Lj3g0018497' => 'lja', 'Lj4g0025071' => 'lja', 'Lsat_1_v5_gn_1_129680' => 'lsa', 'Lsat_1_v5_gn_2_25321' => 'lsa', 'Lsat_1_v5_gn_2_95461' => 'lsa', 'Lsat_1_v5_gn_4_159620' => 'lsa', 'Lsat_1_v5_gn_6_41301' => 'lsa', 'Lsat_1_v5_gn_6_74660' => 'lsa', 'Lsat_1_v5_gn_7_11520' => 'lsa', 'Lsat_1_v5_gn_9_67680' => 'lsa', 'Manes.04G008300' => 'mes', 'Manes.04G008400' => 'mes', 'Manes.04G026500' => 'mes', 'Manes.10G135300' => 'mes', 'Manes.11G157300' => 'mes', 'Manes.12G074000' => 'mes', 'Manes.16G006200' => 'mes', 'Manes.17G026400' => 'mes', 'Mapoly0024s0086' => 'mpo', 'Mapoly0024s0087' => 'mpo', 'Mapoly0071s0057' => 'mpo', 'Mapoly0204s0012' => 'mpo', 'MBI04_g37681_MAGBIO' => 'mbi', 'MBI05_g17779_MAGBIO' => 'mbi', 'MBI12_g31184_MAGBIO' => 'mbi', 'MBI17_g11083_MAGBIO' => 'mbi', 'MBI18_g03883_MAGBIO' => 'mbi', 'MBI18_g28940_MAGBIO' => 'mbi', 'MCO01G690' => 'mco', 'MD03G1109900' => 'mdo', 'MD03G1134800' => 'mdo', 'MD05G1348000' => 'mdo', 'MD10G1322400' => 'mdo', 'MD11G1123300' => 'mdo', 'MD11G1157600' => 'mdo', 'Medtr2g084875' => 'mtr', 'Medtr2g088130' => 'mtr', 'Medtr4g055310' => 'mtr', 'Medtr4g061070' => 'mtr', 'Medtr4g132250' => 'mtr', 'MELO3C004795.2' => 'cme', 'MELO3C004797.2' => 'cme', 'MELO3C007396.2' => 'cme', 'MELO3C019277.2' => 'cme', 'MELO3C021449.2' => 'cme', 'MELO3C025736.2' => 'cme', 'Migut.D02175' => 'egut', 'Migut.H01573' => 'egut', 'Migut.M01327' => 'egut', 'Migut.N02513' => 'egut', 'MSTRG.14638' => 'ama', 'MSTRG.18632' => 'ama', 'MSTRG.7203' => 'ama', 'Nitab4.5_0000533g0140' => 'nta', 'Nitab4.5_0000888g0150' => 'nta', 'Nitab4.5_0001453g0040' => 'nta', 'Nitab4.5_0002827g0090' => 'nta', 'Nitab4.5_0003082g0040' => 'nta', 'Nitab4.5_0007799g0040' => 'nta', 'Nitab4.5_0008983g0010' => 'nta', 'Nitab4.5_0009017g0020' => 'nta', 'Nn1g02132' => 'nnu', 'Nn1g03492' => 'nnu', 'Nn1g03493' => 'nnu', 'Nn1g03494' => 'nnu', 'Nn1g07164' => 'nnu', 'Nn1g07291' => 'nnu', 'Nn2g10655' => 'nnu', 'Nn2g11652' => 'nnu', 'Nn2g14008' => 'nnu', 'Nn3g17476' => 'nnu', 'Nn3g17477' => 'nnu', 'Nn4g22370' => 'nnu', 'Nn4g25255' => 'nnu', 'Nn5g27755' => 'nnu', 'Nn6g34260' => 'nnu', 'Nn6g35041' => 'nnu', 'Oeu005924.1' => 'oeu', 'Oeu008383.1' => 'oeu', 'Oeu014928.1' => 'oeu', 'Oeu019889.1' => 'oeu', 'Oeu022271.1' => 'oeu', 'Oeu025271.1' => 'oeu', 'Oeu036302.1' => 'oeu', 'Oeu044100.1' => 'oeu', 'Os01g0528300' => 'osa', 'Os03g0286200' => 'osa', 'Os04g0406600' => 'osa', 'Os07g0512000' => 'osa', 'Os07g0694600' => 'osa', 'Os08g0411000' => 'osa', 'Os09g0565700' => 'osa', 'Os09g0566050' => 'osa', 'Os10g0523700' => 'osa', 'Peaxi162Scf00002g00514' => 'pax', 'Peaxi162Scf00047g01817' => 'pax', 'Peaxi162Scf00114g00001' => 'pax', 'Peaxi162Scf00147g00613' => 'pax', 'Peaxi162Scf00389g00425' => 'pax', 'PGR042G1139' => 'pgr', 'PGR042G3273' => 'pgr', 'PGR102G2180' => 'pgr', 'PGR119G0234' => 'pgr', 'PGR119G0668' => 'pgr', 'PGSC0003DMG400007122' => 'stu', 'PGSC0003DMG400016478' => 'stu', 'PGSC0003DMG400025374' => 'stu', 'PGSC0003DMG400026536' => 'stu', 'Phvul.003G079600' => 'pvu', 'Phvul.005G115600' => 'pvu', 'Phvul.005G127100' => 'pvu', 'Phvul.006G149500' => 'pvu', 'Phvul.006G149600' => 'pvu', 'Phvul.011G071800' => 'pvu', 'Phvul.011G090400' => 'pvu', 'Potri.004G013400' => 'ptr', 'Potri.004G188100' => 'ptr', 'Potri.008G195500' => 'ptr', 'Potri.009G148800' => 'ptr', 'Potri.011G004700' => 'ptr', 'Pp3c17_22810' => 'ppa', 'Pp3c18_4480' => 'ppa', 'Pp3c19_13030' => 'ppa', 'Pp3c1_33620' => 'ppa', 'Pp3c2_9380' => 'ppa', 'PRCOL_00001023' => 'pco', 'Prupe.3G216300' => 'ppe', 'Prupe.4G019500' => 'ppe', 'Prupe.6G092500' => 'ppe', 'Prupe.6G119200' => 'ppe', 'Psat0s1945g0080' => 'psa', 'Psat0s4167g0040' => 'psa', 'Psat1g185800' => 'psa', 'Psat4g006440' => 'psa', 'Psat4g006480' => 'psa', 'Psat4g168120' => 'psa', 'Psat5g255680' => 'psa', 'Psat5g261760' => 'psa', 'Psat7g222120' => 'psa', 'PSO063G7252' => 'pso', 'PSO170G4778' => 'pso', 'PSO210G2249' => 'pso', 'PSO339G2411' => 'pso', 'PSO339G2457' => 'pso', 'PSO339G2854' => 'pso', 'PSO339G4288' => 'pso', 'PSO339G4615' => 'pso', 'PSO384G2796' => 'pso', 'PSO384G2940' => 'pso', 'PSO384G4227' => 'pso', 'PSO478G1425' => 'pso', 'PSO541G3863' => 'pso', 'PSO675G0507' => 'pso', 'PSO782G0338' => 'pso', 'PSO832G0644' => 'pso', 'QL01p013664' => 'qlo', 'QL01p036598' => 'qlo', 'QL05p072984' => 'qlo', 'QL08p005768' => 'qlo', 'QL08p032743' => 'qlo', 'QL93p0073_0439' => 'qlo', 'QL93p0073_0444' => 'qlo', 'RcHm_v2.0_Chr5g0002851' => 'rch', 'RcHm_v2.0_Chr5g0055201' => 'rch', 'RcHm_v2.0_Chr5g0061191' => 'rch', 'RcHm_v2.0_Chr7g0203231' => 'rch', 'Rhsim01G0208100' => 'rsi', 'Rhsim01G0208200' => 'rsi', 'Rhsim02G0106500' => 'rsi', 'Rhsim03G0107900' => 'rsi', 'Rhsim06G0163400' => 'rsi', 'Rhsim13G0105200' => 'rsi', 'Sabra04G0006300' => 'sbr', 'Sabra04G0127000' => 'sbr', 'Sabra08G0148700' => 'sbr', 'Sabra09G0117400' => 'sbr', 'SalBow1G3326' => 'sbo', 'SalBow3G3228' => 'sbo', 'SalBow6G1634' => 'sbo', 'SalBow6G3603' => 'sbo', 'SalBow6G5266' => 'sbo', 'SalBow7G2265' => 'sbo', 'SalBow8G0850' => 'sbo', 'SalBow8G2592' => 'sbo', 'Sc05g0009240' => 'sci', 'Sc12g0002300' => 'sci', 'Sc21g0000100' => 'sci', 'Sc21g0004720' => 'sci', 'Sed0002949' => 'sed', 'Sed0004114' => 'sed', 'Sed0004306' => 'sed', 'Sed0006172' => 'sed', 'Sed0008413' => 'sed', 'Sed0013809' => 'sed', 'Sed0019556' => 'sed', 'SEGI_03570' => 'sgi', 'SEGI_07859' => 'sgi', 'SEGI_15042' => 'sgi', 'SEGI_16263' => 'sgi', 'SEGI_16552' => 'sgi', 'SEGI_24331' => 'sgi', 'SEGI_27316' => 'sgi', 'SEGI_29521' => 'sgi', 'SEGI_41342' => 'sgi', 'SGA_v2.0_scaffold27G11617' => 'sas', 'SGA_v2.0_scaffold316G48428' => 'sas', 'SGA_v2.0_scaffold49G18261' => 'sas', 'SGA_v2.0_scaffold7G03831' => 'sas', 'SGA_v2.0_scaffold93G28359' => 'sas', 'SHI02210' => 'shi', 'SHI06028' => 'shi', 'SHI06321' => 'shi', 'SMO111G0012' => 'smo', 'SMO228G0080' => 'smo', 'SMO356G0756' => 'smo', 'Solyc02g080620.3' => 'sly', 'Solyc06g074530.1' => 'sly', 'Solyc11g066890.1' => 'sly', 'Solyc11g072520.3' => 'sly', 'Sopen02g025330' => 'spe', 'Sopen06g031000' => 'spe', 'Sopen09g008240' => 'spe', 'Sopen09g025210' => 'spe', 'Sopen11g026600' => 'spe', 'Sopen11g030170' => 'spe', 'Sp1g10420' => 'spa', 'Sp3g06570' => 'spa', 'Sp4g10660' => 'spa', 'Sp5g16460' => 'spa', 'Sp6g22710' => 'spa', 'TAR365G0112' => 'tar', 'TAR369G0717' => 'tar', 'TAR374G0976' => 'tar', 'TAR623G1128' => 'tar', 'TAR626G1937' => 'tar', 'TAR627G0123' => 'tar', 'TAR628G0305' => 'tar', 'TAR636G1176' => 'tar', 'TAR636G2442' => 'tar', 'THA.LOC104800556' => 'tha', 'THA.LOC104809501' => 'tha', 'THA.LOC104815126' => 'tha', 'THA.LOC104815732' => 'tha', 'THA.LOC104823528' => 'tha', 'Thecc.02G365600' => 'tca', 'Thecc.06G222300' => 'tca', 'Thecc.09G261800' => 'tca', 'Thecc.09G291400' => 'tca', 'Thhalv10003028m.g' => 'esa', 'Thhalv10007886m.g' => 'esa', 'Thhalv10016085m.g' => 'esa', 'Thhalv10016681m.g' => 'esa', 'Thhalv10020951m.g' => 'esa', 'TPR.G15598' => 'tpr', 'TPR.G29305' => 'tpr', 'TPR.G32395' => 'tpr', 'TPR.G36998' => 'tpr', 'TPR.G4227' => 'tpr', 'TWI18G1433' => 'twi', 'TWI31G0755' => 'twi', 'TWI38G0912' => 'twi', 'TWI75G1097' => 'twi', 'TWI75G1619' => 'twi', 'TWI79G1336' => 'twi', 'unitig_0.g943' => 'ugi', 'unitig_0.g944' => 'ugi', 'unitig_22.g6646' => 'ugi', 'unitig_37.g12681' => 'ugi', 'unitig_8.g3290' => 'ugi', 'vmacro03278' => 'vma', 'vmacro12197' => 'vma', 'vmacro14478' => 'vma', 'vmacro15787' => 'vma', 'vmacro15789' => 'vma', 'vmacro15790' => 'vma', 'vmacro15806' => 'vma', 'vmacro22907' => 'vma', 'vmacro22908' => 'vma', 'vmacro22909' => 'vma', 'vmacro23108' => 'vma', 'VMungo0540G0540' => 'vmu', 'VMungo0540G2468' => 'vmu', 'VMungo1080G0390' => 'vmu', 'VMungo1080G1165' => 'vmu', 'VMungo1127G0170' => 'vmu', 'VMungo1127G2099' => 'vmu', 'VMungo1215G3013' => 'vmu', 'Zm00001eb013110' => 'zma', 'Zm00001eb084260' => 'zma', 'Zm00001eb096110' => 'zma', 'Zm00001eb217510' => 'zma', 'Zm00001eb322550' => 'zma', 'Zm00001eb390770' => 'zma', 'Zm00001eb397170' => 'zma', 'Zm00001eb404610' => 'zma', 'Zm00001eb421790' => 'zma' ), 'gf_id' => 'HOM05D000911', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000911' ), 'data_identifier' => 'HOM05D000911', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000911', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27780' => 'bna', 'A03p35380' => 'bna', 'A04p21160' => 'bna', 'A05p40570' => 'bna', 'A06p26900' => 'bna', 'A08p33230' => 'bna', 'A09p65960' => 'bna', 'A10p18290' => 'bna', 'Aa31LG1G12990' => 'aar', 'Aa31LG1G2980' => 'aar', 'Aa31LG4G14320' => 'aar', 'Aa31LG7G11800' => 'aar', 'Aa31sc36G50' => 'aar', 'Aa31sc36G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3721' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5459' => 'aag', 'Actinidia03028' => 'ach', 'Actinidia03753' => 'ach', 'Actinidia04187' => 'ach', 'Actinidia05509' => 'ach', 'Actinidia24180' => 'ach', 'Actinidia26906' => 'ach', 'Actinidia37097' => 'ach', 'Actinidia38249' => 'ach', 'Ah.01g003470' => 'amhyb', 'Ah.01g004580' => 'amhyb', 'Ah.01g014850' => 'amhyb', 'Ah.01g016830' => 'amhyb', 'Ah.14g088000' => 'amhyb', 'AL1G22980' => 'aly', 'AL3G18990' => 'aly', 'AL4G22440' => 'aly', 'AL4G33180' => 'aly', 'AL5G22920' => 'aly', 'AL6G33660' => 'aly', 'AL8G20720' => 'aly', 'Aqoxy1G00935' => 'aox', 'Aqoxy1G02094' => 'aox', 'Aqoxy2G01239' => 'aox', 'Aqoxy4G01870' => 'aox', 'Aqoxy7G00450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.36ZVTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71EM27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5D6C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH3WRE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3NCM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RIM768' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YB5YRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z36GDV' => 'arhy', 'AT1G08250' => 'ath', 'AT1G11790' => 'ath', 'AT2G27820' => 'ath', 'AT3G07630' => 'ath', 'AT3G44720' => 'ath', 'AT5G22630' => 'ath', 'ATR0693G304' => 'atr', 'ATR0794G109' => 'atr', 'ATR0820G120' => 'atr', 'ATR1159G064' => 'atr', 'Atru.chr10.2239' => 'acertr', 'Atru.chr3.3371' => 'acertr', 'Atru.chr6.3202' => 'acertr', 'AUR62006499' => 'cqu', 'AUR62012718' => 'cqu', 'AUR62021938' => 'cqu', 'AUR62023932' => 'cqu', 'AUR62025034' => 'cqu', 'AUR62025035' => 'cqu', 'AUR62038307' => 'cqu', 'AUR62043466' => 'cqu', 'BcaB02g10748' => 'bca', 'BcaB03g13231' => 'bca', 'BcaB03g14689' => 'bca', 'BcaB05g22716' => 'bca', 'BcaB06g28172' => 'bca', 'BcaB08g36413' => 'bca', 'BcaC01g02186' => 'bca', 'BcaC01g04272' => 'bca', 'BcaC02g08080' => 'bca', 'BcaC02g08227' => 'bca', 'BcaC03g13901' => 'bca', 'BcaC04g19593' => 'bca', 'BcaC04g20874' => 'bca', 'BcaC05g29557' => 'bca', 'BcaC06g35505' => 'bca', 'BcaC07g41954' => 'bca', 'BcaC07g41955' => 'bca', 'BcaC07g41956' => 'bca', 'BcaC07g42519' => 'bca', 'BcaC07g42520' => 'bca', 'BcaC07g42523' => 'bca', 'BcaC07g42524' => 'bca', 'BcaC07g42525' => 'bca', 'BcaC08g47480' => 'bca', 'BcaC08g47481' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00530' => 'bna', 'BolC2t07178H' => 'bol', 'BolC3t16567H' => 'bol', 'BolC4t27234H' => 'bol', 'BolC5t29728H' => 'bol', 'BolC5t34622H' => 'bol', 'BolC6t40321H' => 'bol', 'BolC7t42028H' => 'bol', 'BolC8t49125H' => 'bol', 'BolC8t52538H' => 'bol', 'BolC8t52539H' => 'bol', 'BolC9t56681H' => 'bol', 'BolC9t58266H' => 'bol', 'BolSC21t60294H' => 'bol', 'BraA02t05670Z' => 'bra', 'BraA03t12716Z' => 'bra', 'BraA04t17685Z' => 'bra', 'BraA05t22788Z' => 'bra', 'BraA06t24032Z' => 'bra', 'BraA06t25625Z' => 'bra', 'BraA07t27930Z' => 'bra', 'BraA08t35242Z' => 'bra', 'BraA09t38609Z' => 'bra', 'BraA10t43905Z' => 'bra', 'C02p11060' => 'bna', 'C03p42990' => 'bna', 'C03p67310' => 'bna', 'C04p56990' => 'bna', 'C04p58660' => 'bna', 'C05p09890' => 'bna', 'C05p59680' => 'bna', 'C06p19830' => 'bna', 'C06p53040' => 'bna', 'C07p15230' => 'bna', 'C08p50070' => 'bna', 'C08p50090' => 'bna', 'C09p38330' => 'bna', 'C09p53940' => 'bna', 'CAN.G1014.1' => 'can', 'CAN.G644.30' => 'can', 'CAN.G84.47' => 'can', 'CAN.G919.8' => 'can', 'CANSAT54G0113' => 'cansat', 'CANSAT54G1286' => 'cansat', 'CANSAT64G1020' => 'cansat', 'CARHR008080' => 'chi', 'CARHR008090' => 'chi', 'CARHR012130' => 'chi', 'CARHR038390' => 'chi', 'CARHR082330' => 'chi', 'CARHR120520' => 'chi', 'CARHR151470' => 'chi', 'CARHR190950' => 'chi', 'Carub.0001s0760' => 'cru', 'Carub.0001s1146' => 'cru', 'Carub.0003s0721' => 'cru', 'Carub.0004s0858' => 'cru', 'Carub.0005s1040' => 'cru', 'Carub.0006s2035' => 'cru', 'Carub.0015s0005' => 'cru', 'Ca_01607_v3' => 'car', 'Ca_01677_v3' => 'car', 'Ca_06087_v3' => 'car', 'Ca_19238_v3' => 'car', 'Ca_19373_v3' => 'car', 'Ca_21079_v3' => 'car', 'CBR_g54016' => 'cbr', 'CBR_g54018' => 'cbr', 'CBR_g54020' => 'cbr', 'Cc01_g09780' => 'ccan', 'Cc01_g11680' => 'ccan', 'Cc02_g15610' => 'ccan', 'Cc05_g04350' => 'ccan', 'Cc09_g01580' => 'ccan', 'CDE01G0795' => 'cde', 'CDE02G2024' => 'cde', 'CDE02G2260' => 'cde', 'CDE02G4561' => 'cde', 'CDE05G2733' => 'cde', 'CDE05G3422' => 'cde', 'CDE06G2003' => 'cde', 'CDE08G0576' => 'cde', 'CDE09G0048' => 'cde', 'CDE11G0805' => 'cde', 'Cfa003644' => 'cfa', 'Cfa006290' => 'cfa', 'Cfa010080' => 'cfa', 'Cfa011376' => 'cfa', 'Cfa011576' => 'cfa', 'Cfa011577' => 'cfa', 'Cfa014389' => 'cfa', 'Ciclev10006044m.g' => 'ccl', 'Ciclev10006954m.g' => 'ccl', 'Ciclev10015131m.g' => 'ccl', 'Ciclev10015580m.g' => 'ccl', 'Ciclev10028359m.g' => 'ccl', 'Ciclev10028573m.g' => 'ccl', 'CiPaw.03G159300' => 'cil', 'CiPaw.04G115100' => 'cil', 'CiPaw.09G092800' => 'cil', 'CiPaw.10G071800' => 'cil', 'CiPaw.13G105800' => 'cil', 'CiPaw.13G141000' => 'cil', 'CiPaw.14G103400' => 'cil', 'ClCG01G012700' => 'cla', 'ClCG01G012720' => 'cla', 'ClCG01G021920' => 'cla', 'ClCG02G008870' => 'cla', 'ClCG02G020840' => 'cla', 'ClCG02G021930' => 'cla', 'COL.COLO4_19302' => 'col', 'COL.COLO4_25262' => 'col', 'COL.COLO4_31788' => 'col', 'Cpa.g.c34684' => 'cpa', 'Cpa.g.c36520.1' => 'cpa', 'Cpa.g.c45626' => 'cpa', 'Cpa.g.sc121.17' => 'cpa', 'Cpa.g.sc13.22' => 'cpa', 'Cpa.g.sc87.88' => 'cpa', 'Cre06.g261800' => 'cre', 'CsaV3_1G014500' => 'csa', 'CsaV3_1G014510' => 'csa', 'CsaV3_2G034880' => 'csa', 'CsaV3_6G014760' => 'csa', 'CsaV3_6G021500' => 'csa', 'CsaV3_6G048980' => 'csa', 'CSS0002511' => 'camsi', 'CSS0007556' => 'camsi', 'CSS0008532' => 'camsi', 'CSS0009709' => 'camsi', 'CSS0010486' => 'camsi', 'CSS0016768' => 'camsi', 'CSS0023512' => 'camsi', 'CSS0025341' => 'camsi', 'CSS0027999' => 'camsi', 'CSS0028944' => 'camsi', 'CSS0032292' => 'camsi', 'CSS0032464' => 'camsi', 'CSS0037153' => 'camsi', 'CSS0039256' => 'camsi', 'CSS0048392' => 'camsi', 'CSS0050458' => 'camsi', 'DCAR_004224' => 'dca', 'DCAR_006147' => 'dca', 'DCAR_006465' => 'dca', 'DCAR_008159' => 'dca', 'DCAR_012164' => 'dca', 'DCAR_019764' => 'dca', 'Dinv05418' => 'din', 'Dinv10839' => 'din', 'Dinv12521' => 'din', 'Dinv13900' => 'din', 'Dinv29426' => 'din', 'Duzib150G0263' => 'dzi', 'Duzib168G1178' => 'dzi', 'Duzib168G1924' => 'dzi', 'Duzib170G0299' => 'dzi', 'Duzib170G0813' => 'dzi', 'Duzib235G1128' => 'dzi', 'Duzib248G1060' => 'dzi', 'ECA232G1910' => 'eca', 'ECA233G4621' => 'eca', 'ECA238G1216' => 'eca', 'ECA238G1784' => 'eca', 'ECA248G1242' => 'eca', 'EL10Ac8g20071' => 'bvu', 'EL10Ac9g21086' => 'bvu', 'EL10Ac9g22407' => 'bvu', 'EL10Ac9g22412' => 'bvu', 'Eucgr.A01119' => 'egr', 'Eucgr.E04043' => 'egr', 'Eucgr.J00428' => 'egr', 'Eucgr.J00958' => 'egr', 'FAN11G3091' => 'fan', 'FAN11G3651' => 'fan', 'FAN16G2566' => 'fan', 'FAN21G3155' => 'fan', 'FAN21G3400' => 'fan', 'FAN21G3543' => 'fan', 'FAN25G0234' => 'fan', 'FAN25G1422' => 'fan', 'FAN25G3392' => 'fan', 'FvH4_3g01940' => 'fve', 'FvH4_3g29870' => 'fve', 'FvH4_3g33680' => 'fve', 'Glyma.09G004200' => 'gma', 'Glyma.11G151288' => 'gma', 'Glyma.11G189100' => 'gma', 'Glyma.12G072500' => 'gma', 'Glyma.12G085500' => 'gma', 'Glyma.12G181800' => 'gma', 'Glyma.12G193000' => 'gma', 'Glyma.13G309300' => 'gma', 'Glyma.13G319000' => 'gma', 'Glyma.17G012600' => 'gma', 'Gohir.A06G148600' => 'ghi', 'Gohir.A07G115800' => 'ghi', 'Gohir.A08G003600' => 'ghi', 'Gohir.A09G093300' => 'ghi', 'Gohir.A09G105400' => 'ghi', 'Gohir.A09G105500' => 'ghi', 'Gohir.D06G154600' => 'ghi', 'Gohir.D07G120200' => 'ghi', 'Gohir.D08G013900' => 'ghi', 'Gohir.D09G093100' => 'ghi', 'Gohir.D09G102200' => 'ghi', 'Gohir.D09G102300' => 'ghi', 'Gorai.001G129400' => 'gra', 'Gorai.004G008200' => 'gra', 'Gorai.006G109800' => 'gra', 'Gorai.006G119500' => 'gra', 'Gorai.006G121300' => 'gra', 'Gorai.010G180700' => 'gra', 'GSVIVG01012716001' => 'vvi', 'GSVIVG01025118001' => 'vvi', 'GSVIVG01030439001' => 'vvi', 'GSVIVG01031397001' => 'vvi', 'HanXRQChr01g0004201' => 'han', 'HanXRQChr02g0054941' => 'han', 'HanXRQChr05g0141811' => 'han', 'HanXRQChr07g0197751' => 'han', 'HanXRQChr11g0346691' => 'han', 'HanXRQChr13g0396971' => 'han', 'HanXRQChr14g0432951' => 'han', 'HanXRQChr14g0452001' => 'han', 'HanXRQChr15g0496681' => 'han', 'HanXRQChr17g0557491' => 'han', 'HanXRQChr17g0557501' => 'han', 'Haze_06809' => 'cav', 'Haze_12852' => 'cav', 'Haze_15850' => 'cav', 'Haze_23446' => 'cav', 'Haze_23942' => 'cav', 'Haze_23943' => 'cav', 'Hma1.2p1_0091F.1_g046450' => 'hma', 'Hma1.2p1_0128F.1_g059910' => 'hma', 'Hma1.2p1_0249F.1_g102260' => 'hma', 'Hma1.2p1_0453F.1_g156190' => 'hma', 'Hma1.2p1_0695F.1_g204380' => 'hma', 'Hma1.2p1_0749F.1_g212650' => 'hma', 'Hma1.2p1_2156F.1_g315420' => 'hma', 'Hma1.2p1_2686F.1_g326940' => 'hma', 'HPP92_006428' => 'vpl', 'HPP92_012069' => 'vpl', 'HPP92_014129' => 'vpl', 'HPP92_014133' => 'vpl', 'HPP92_017315' => 'vpl', 'HPP92_026445' => 'vpl', 'HPP92_026446' => 'vpl', 'Hund00774' => 'sun', 'Hund07682' => 'sun', 'Hund21413' => 'sun', 'Hund23462' => 'sun', 'Hund23463' => 'sun', 'Lalb_Chr03g0027911' => 'lal', 'Lalb_Chr13g0304271' => 'lal', 'Lalb_Chr19g0137471' => 'lal', 'Lalb_Chr22g0350651' => 'lal', 'Lalb_Chr24g0395151' => 'lal', 'Lj1A1231T40' => 'lonja', 'Lj1A221T48' => 'lonja', 'Lj1C924T12' => 'lonja', 'Lj2C993G6' => 'lonja', 'Lj3g0005790' => 'lja', 'Lj3g0015432' => 'lja', 'Lj3g0017722' => 'lja', 'Lj3g0018497' => 'lja', 'Lj4g0025071' => 'lja', 'Lsat_1_v5_gn_1_129680' => 'lsa', 'Lsat_1_v5_gn_2_25321' => 'lsa', 'Lsat_1_v5_gn_2_95461' => 'lsa', 'Lsat_1_v5_gn_4_159620' => 'lsa', 'Lsat_1_v5_gn_6_41301' => 'lsa', 'Lsat_1_v5_gn_6_74660' => 'lsa', 'Lsat_1_v5_gn_7_11520' => 'lsa', 'Lsat_1_v5_gn_9_67680' => 'lsa', 'Manes.04G008300' => 'mes', 'Manes.04G008400' => 'mes', 'Manes.04G026500' => 'mes', 'Manes.10G135300' => 'mes', 'Manes.11G157300' => 'mes', 'Manes.12G074000' => 'mes', 'Manes.16G006200' => 'mes', 'Manes.17G026400' => 'mes', 'Mapoly0024s0086' => 'mpo', 'Mapoly0024s0087' => 'mpo', 'Mapoly0071s0057' => 'mpo', 'Mapoly0204s0012' => 'mpo', 'MBI04_g37681_MAGBIO' => 'mbi', 'MBI05_g17779_MAGBIO' => 'mbi', 'MBI12_g31184_MAGBIO' => 'mbi', 'MBI17_g11083_MAGBIO' => 'mbi', 'MBI18_g03883_MAGBIO' => 'mbi', 'MBI18_g28940_MAGBIO' => 'mbi', 'MCO01G690' => 'mco', 'MD03G1109900' => 'mdo', 'MD03G1134800' => 'mdo', 'MD05G1348000' => 'mdo', 'MD10G1322400' => 'mdo', 'MD11G1123300' => 'mdo', 'MD11G1157600' => 'mdo', 'Medtr2g084875' => 'mtr', 'Medtr2g088130' => 'mtr', 'Medtr4g055310' => 'mtr', 'Medtr4g061070' => 'mtr', 'Medtr4g132250' => 'mtr', 'MELO3C004795.2' => 'cme', 'MELO3C004797.2' => 'cme', 'MELO3C007396.2' => 'cme', 'MELO3C019277.2' => 'cme', 'MELO3C021449.2' => 'cme', 'MELO3C025736.2' => 'cme', 'Migut.D02175' => 'egut', 'Migut.H01573' => 'egut', 'Migut.M01327' => 'egut', 'Migut.N02513' => 'egut', 'MSTRG.14638' => 'ama', 'MSTRG.18632' => 'ama', 'MSTRG.7203' => 'ama', 'Nitab4.5_0000533g0140' => 'nta', 'Nitab4.5_0000888g0150' => 'nta', 'Nitab4.5_0001453g0040' => 'nta', 'Nitab4.5_0002827g0090' => 'nta', 'Nitab4.5_0003082g0040' => 'nta', 'Nitab4.5_0007799g0040' => 'nta', 'Nitab4.5_0008983g0010' => 'nta', 'Nitab4.5_0009017g0020' => 'nta', 'Nn1g02132' => 'nnu', 'Nn1g03492' => 'nnu', 'Nn1g03493' => 'nnu', 'Nn1g03494' => 'nnu', 'Nn1g07164' => 'nnu', 'Nn1g07291' => 'nnu', 'Nn2g10655' => 'nnu', 'Nn2g11652' => 'nnu', 'Nn2g14008' => 'nnu', 'Nn3g17476' => 'nnu', 'Nn3g17477' => 'nnu', 'Nn4g22370' => 'nnu', 'Nn4g25255' => 'nnu', 'Nn5g27755' => 'nnu', 'Nn6g34260' => 'nnu', 'Nn6g35041' => 'nnu', 'Oeu005924.1' => 'oeu', 'Oeu008383.1' => 'oeu', 'Oeu014928.1' => 'oeu', 'Oeu019889.1' => 'oeu', 'Oeu022271.1' => 'oeu', 'Oeu025271.1' => 'oeu', 'Oeu036302.1' => 'oeu', 'Oeu044100.1' => 'oeu', 'Os01g0528300' => 'osa', 'Os03g0286200' => 'osa', 'Os04g0406600' => 'osa', 'Os07g0512000' => 'osa', 'Os07g0694600' => 'osa', 'Os08g0411000' => 'osa', 'Os09g0565700' => 'osa', 'Os09g0566050' => 'osa', 'Os10g0523700' => 'osa', 'Peaxi162Scf00002g00514' => 'pax', 'Peaxi162Scf00047g01817' => 'pax', 'Peaxi162Scf00114g00001' => 'pax', 'Peaxi162Scf00147g00613' => 'pax', 'Peaxi162Scf00389g00425' => 'pax', 'PGR042G1139' => 'pgr', 'PGR042G3273' => 'pgr', 'PGR102G2180' => 'pgr', 'PGR119G0234' => 'pgr', 'PGR119G0668' => 'pgr', 'PGSC0003DMG400007122' => 'stu', 'PGSC0003DMG400016478' => 'stu', 'PGSC0003DMG400025374' => 'stu', 'PGSC0003DMG400026536' => 'stu', 'Phvul.003G079600' => 'pvu', 'Phvul.005G115600' => 'pvu', 'Phvul.005G127100' => 'pvu', 'Phvul.006G149500' => 'pvu', 'Phvul.006G149600' => 'pvu', 'Phvul.011G071800' => 'pvu', 'Phvul.011G090400' => 'pvu', 'Potri.004G013400' => 'ptr', 'Potri.004G188100' => 'ptr', 'Potri.008G195500' => 'ptr', 'Potri.009G148800' => 'ptr', 'Potri.011G004700' => 'ptr', 'Pp3c17_22810' => 'ppa', 'Pp3c18_4480' => 'ppa', 'Pp3c19_13030' => 'ppa', 'Pp3c1_33620' => 'ppa', 'Pp3c2_9380' => 'ppa', 'PRCOL_00001023' => 'pco', 'Prupe.3G216300' => 'ppe', 'Prupe.4G019500' => 'ppe', 'Prupe.6G092500' => 'ppe', 'Prupe.6G119200' => 'ppe', 'Psat0s1945g0080' => 'psa', 'Psat0s4167g0040' => 'psa', 'Psat1g185800' => 'psa', 'Psat4g006440' => 'psa', 'Psat4g006480' => 'psa', 'Psat4g168120' => 'psa', 'Psat5g255680' => 'psa', 'Psat5g261760' => 'psa', 'Psat7g222120' => 'psa', 'PSO063G7252' => 'pso', 'PSO170G4778' => 'pso', 'PSO210G2249' => 'pso', 'PSO339G2411' => 'pso', 'PSO339G2457' => 'pso', 'PSO339G2854' => 'pso', 'PSO339G4288' => 'pso', 'PSO339G4615' => 'pso', 'PSO384G2796' => 'pso', 'PSO384G2940' => 'pso', 'PSO384G4227' => 'pso', 'PSO478G1425' => 'pso', 'PSO541G3863' => 'pso', 'PSO675G0507' => 'pso', 'PSO782G0338' => 'pso', 'PSO832G0644' => 'pso', 'QL01p013664' => 'qlo', 'QL01p036598' => 'qlo', 'QL05p072984' => 'qlo', 'QL08p005768' => 'qlo', 'QL08p032743' => 'qlo', 'QL93p0073_0439' => 'qlo', 'QL93p0073_0444' => 'qlo', 'RcHm_v2.0_Chr5g0002851' => 'rch', 'RcHm_v2.0_Chr5g0055201' => 'rch', 'RcHm_v2.0_Chr5g0061191' => 'rch', 'RcHm_v2.0_Chr7g0203231' => 'rch', 'Rhsim01G0208100' => 'rsi', 'Rhsim01G0208200' => 'rsi', 'Rhsim02G0106500' => 'rsi', 'Rhsim03G0107900' => 'rsi', 'Rhsim06G0163400' => 'rsi', 'Rhsim13G0105200' => 'rsi', 'Sabra04G0006300' => 'sbr', 'Sabra04G0127000' => 'sbr', 'Sabra08G0148700' => 'sbr', 'Sabra09G0117400' => 'sbr', 'SalBow1G3326' => 'sbo', 'SalBow3G3228' => 'sbo', 'SalBow6G1634' => 'sbo', 'SalBow6G3603' => 'sbo', 'SalBow6G5266' => 'sbo', 'SalBow7G2265' => 'sbo', 'SalBow8G0850' => 'sbo', 'SalBow8G2592' => 'sbo', 'Sc05g0009240' => 'sci', 'Sc12g0002300' => 'sci', 'Sc21g0000100' => 'sci', 'Sc21g0004720' => 'sci', 'Sed0002949' => 'sed', 'Sed0004114' => 'sed', 'Sed0004306' => 'sed', 'Sed0006172' => 'sed', 'Sed0008413' => 'sed', 'Sed0013809' => 'sed', 'Sed0019556' => 'sed', 'SEGI_03570' => 'sgi', 'SEGI_07859' => 'sgi', 'SEGI_15042' => 'sgi', 'SEGI_16263' => 'sgi', 'SEGI_16552' => 'sgi', 'SEGI_24331' => 'sgi', 'SEGI_27316' => 'sgi', 'SEGI_29521' => 'sgi', 'SEGI_41342' => 'sgi', 'SGA_v2.0_scaffold27G11617' => 'sas', 'SGA_v2.0_scaffold316G48428' => 'sas', 'SGA_v2.0_scaffold49G18261' => 'sas', 'SGA_v2.0_scaffold7G03831' => 'sas', 'SGA_v2.0_scaffold93G28359' => 'sas', 'SHI02210' => 'shi', 'SHI06028' => 'shi', 'SHI06321' => 'shi', 'SMO111G0012' => 'smo', 'SMO228G0080' => 'smo', 'SMO356G0756' => 'smo', 'Solyc02g080620.3' => 'sly', 'Solyc06g074530.1' => 'sly', 'Solyc11g066890.1' => 'sly', 'Solyc11g072520.3' => 'sly', 'Sopen02g025330' => 'spe', 'Sopen06g031000' => 'spe', 'Sopen09g008240' => 'spe', 'Sopen09g025210' => 'spe', 'Sopen11g026600' => 'spe', 'Sopen11g030170' => 'spe', 'Sp1g10420' => 'spa', 'Sp3g06570' => 'spa', 'Sp4g10660' => 'spa', 'Sp5g16460' => 'spa', 'Sp6g22710' => 'spa', 'TAR365G0112' => 'tar', 'TAR369G0717' => 'tar', 'TAR374G0976' => 'tar', 'TAR623G1128' => 'tar', 'TAR626G1937' => 'tar', 'TAR627G0123' => 'tar', 'TAR628G0305' => 'tar', 'TAR636G1176' => 'tar', 'TAR636G2442' => 'tar', 'THA.LOC104800556' => 'tha', 'THA.LOC104809501' => 'tha', 'THA.LOC104815126' => 'tha', 'THA.LOC104815732' => 'tha', 'THA.LOC104823528' => 'tha', 'Thecc.02G365600' => 'tca', 'Thecc.06G222300' => 'tca', 'Thecc.09G261800' => 'tca', 'Thecc.09G291400' => 'tca', 'Thhalv10003028m.g' => 'esa', 'Thhalv10007886m.g' => 'esa', 'Thhalv10016085m.g' => 'esa', 'Thhalv10016681m.g' => 'esa', 'Thhalv10020951m.g' => 'esa', 'TPR.G15598' => 'tpr', 'TPR.G29305' => 'tpr', 'TPR.G32395' => 'tpr', 'TPR.G36998' => 'tpr', 'TPR.G4227' => 'tpr', 'TWI18G1433' => 'twi', 'TWI31G0755' => 'twi', 'TWI38G0912' => 'twi', 'TWI75G1097' => 'twi', 'TWI75G1619' => 'twi', 'TWI79G1336' => 'twi', 'unitig_0.g943' => 'ugi', 'unitig_0.g944' => 'ugi', 'unitig_22.g6646' => 'ugi', 'unitig_37.g12681' => 'ugi', 'unitig_8.g3290' => 'ugi', 'vmacro03278' => 'vma', 'vmacro12197' => 'vma', 'vmacro14478' => 'vma', 'vmacro15787' => 'vma', 'vmacro15789' => 'vma', 'vmacro15790' => 'vma', 'vmacro15806' => 'vma', 'vmacro22907' => 'vma', 'vmacro22908' => 'vma', 'vmacro22909' => 'vma', 'vmacro23108' => 'vma', 'VMungo0540G0540' => 'vmu', 'VMungo0540G2468' => 'vmu', 'VMungo1080G0390' => 'vmu', 'VMungo1080G1165' => 'vmu', 'VMungo1127G0170' => 'vmu', 'VMungo1127G2099' => 'vmu', 'VMungo1215G3013' => 'vmu', 'Zm00001eb013110' => 'zma', 'Zm00001eb084260' => 'zma', 'Zm00001eb096110' => 'zma', 'Zm00001eb217510' => 'zma', 'Zm00001eb322550' => 'zma', 'Zm00001eb390770' => 'zma', 'Zm00001eb397170' => 'zma', 'Zm00001eb404610' => 'zma', 'Zm00001eb421790' => 'zma' ) $gf_id = 'HOM05D000911' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000911' ) $data_identifier = 'HOM05D000911' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 16, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 5, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 6, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 8, 'nnu' => (int) 16, 'oeu' => (int) 8, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 5, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 16, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421790' $species_info = array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ) $local_species = 'mco' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000911', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27780' => 'bna', 'A03p35380' => 'bna', 'A04p21160' => 'bna', 'A05p40570' => 'bna', 'A06p26900' => 'bna', 'A08p33230' => 'bna', 'A09p65960' => 'bna', 'A10p18290' => 'bna', 'Aa31LG1G12990' => 'aar', 'Aa31LG1G2980' => 'aar', 'Aa31LG4G14320' => 'aar', 'Aa31LG7G11800' => 'aar', 'Aa31sc36G50' => 'aar', 'Aa31sc36G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3721' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5459' => 'aag', 'Actinidia03028' => 'ach', 'Actinidia03753' => 'ach', 'Actinidia04187' => 'ach', 'Actinidia05509' => 'ach', 'Actinidia24180' => 'ach', 'Actinidia26906' => 'ach', 'Actinidia37097' => 'ach', 'Actinidia38249' => 'ach', 'Ah.01g003470' => 'amhyb', 'Ah.01g004580' => 'amhyb', 'Ah.01g014850' => 'amhyb', 'Ah.01g016830' => 'amhyb', 'Ah.14g088000' => 'amhyb', 'AL1G22980' => 'aly', 'AL3G18990' => 'aly', 'AL4G22440' => 'aly', 'AL4G33180' => 'aly', 'AL5G22920' => 'aly', 'AL6G33660' => 'aly', 'AL8G20720' => 'aly', 'Aqoxy1G00935' => 'aox', 'Aqoxy1G02094' => 'aox', 'Aqoxy2G01239' => 'aox', 'Aqoxy4G01870' => 'aox', 'Aqoxy7G00450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.36ZVTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71EM27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5D6C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH3WRE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3NCM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RIM768' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YB5YRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z36GDV' => 'arhy', 'AT1G08250' => 'ath', 'AT1G11790' => 'ath', 'AT2G27820' => 'ath', 'AT3G07630' => 'ath', 'AT3G44720' => 'ath', 'AT5G22630' => 'ath', 'ATR0693G304' => 'atr', 'ATR0794G109' => 'atr', 'ATR0820G120' => 'atr', 'ATR1159G064' => 'atr', 'Atru.chr10.2239' => 'acertr', 'Atru.chr3.3371' => 'acertr', 'Atru.chr6.3202' => 'acertr', 'AUR62006499' => 'cqu', 'AUR62012718' => 'cqu', 'AUR62021938' => 'cqu', 'AUR62023932' => 'cqu', 'AUR62025034' => 'cqu', 'AUR62025035' => 'cqu', 'AUR62038307' => 'cqu', 'AUR62043466' => 'cqu', 'BcaB02g10748' => 'bca', 'BcaB03g13231' => 'bca', 'BcaB03g14689' => 'bca', 'BcaB05g22716' => 'bca', 'BcaB06g28172' => 'bca', 'BcaB08g36413' => 'bca', 'BcaC01g02186' => 'bca', 'BcaC01g04272' => 'bca', 'BcaC02g08080' => 'bca', 'BcaC02g08227' => 'bca', 'BcaC03g13901' => 'bca', 'BcaC04g19593' => 'bca', 'BcaC04g20874' => 'bca', 'BcaC05g29557' => 'bca', 'BcaC06g35505' => 'bca', 'BcaC07g41954' => 'bca', 'BcaC07g41955' => 'bca', 'BcaC07g41956' => 'bca', 'BcaC07g42519' => 'bca', 'BcaC07g42520' => 'bca', 'BcaC07g42523' => 'bca', 'BcaC07g42524' => 'bca', 'BcaC07g42525' => 'bca', 'BcaC08g47480' => 'bca', 'BcaC08g47481' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00530' => 'bna', 'BolC2t07178H' => 'bol', 'BolC3t16567H' => 'bol', 'BolC4t27234H' => 'bol', 'BolC5t29728H' => 'bol', 'BolC5t34622H' => 'bol', 'BolC6t40321H' => 'bol', 'BolC7t42028H' => 'bol', 'BolC8t49125H' => 'bol', 'BolC8t52538H' => 'bol', 'BolC8t52539H' => 'bol', 'BolC9t56681H' => 'bol', 'BolC9t58266H' => 'bol', 'BolSC21t60294H' => 'bol', 'BraA02t05670Z' => 'bra', 'BraA03t12716Z' => 'bra', 'BraA04t17685Z' => 'bra', 'BraA05t22788Z' => 'bra', 'BraA06t24032Z' => 'bra', 'BraA06t25625Z' => 'bra', 'BraA07t27930Z' => 'bra', 'BraA08t35242Z' => 'bra', 'BraA09t38609Z' => 'bra', 'BraA10t43905Z' => 'bra', 'C02p11060' => 'bna', 'C03p42990' => 'bna', 'C03p67310' => 'bna', 'C04p56990' => 'bna', 'C04p58660' => 'bna', 'C05p09890' => 'bna', 'C05p59680' => 'bna', 'C06p19830' => 'bna', 'C06p53040' => 'bna', 'C07p15230' => 'bna', 'C08p50070' => 'bna', 'C08p50090' => 'bna', 'C09p38330' => 'bna', 'C09p53940' => 'bna', 'CAN.G1014.1' => 'can', 'CAN.G644.30' => 'can', 'CAN.G84.47' => 'can', 'CAN.G919.8' => 'can', 'CANSAT54G0113' => 'cansat', 'CANSAT54G1286' => 'cansat', 'CANSAT64G1020' => 'cansat', 'CARHR008080' => 'chi', 'CARHR008090' => 'chi', 'CARHR012130' => 'chi', 'CARHR038390' => 'chi', 'CARHR082330' => 'chi', 'CARHR120520' => 'chi', 'CARHR151470' => 'chi', 'CARHR190950' => 'chi', 'Carub.0001s0760' => 'cru', 'Carub.0001s1146' => 'cru', 'Carub.0003s0721' => 'cru', 'Carub.0004s0858' => 'cru', 'Carub.0005s1040' => 'cru', 'Carub.0006s2035' => 'cru', 'Carub.0015s0005' => 'cru', 'Ca_01607_v3' => 'car', 'Ca_01677_v3' => 'car', 'Ca_06087_v3' => 'car', 'Ca_19238_v3' => 'car', 'Ca_19373_v3' => 'car', 'Ca_21079_v3' => 'car', 'CBR_g54016' => 'cbr', 'CBR_g54018' => 'cbr', 'CBR_g54020' => 'cbr', 'Cc01_g09780' => 'ccan', 'Cc01_g11680' => 'ccan', 'Cc02_g15610' => 'ccan', 'Cc05_g04350' => 'ccan', 'Cc09_g01580' => 'ccan', 'CDE01G0795' => 'cde', 'CDE02G2024' => 'cde', 'CDE02G2260' => 'cde', 'CDE02G4561' => 'cde', 'CDE05G2733' => 'cde', 'CDE05G3422' => 'cde', 'CDE06G2003' => 'cde', 'CDE08G0576' => 'cde', 'CDE09G0048' => 'cde', 'CDE11G0805' => 'cde', 'Cfa003644' => 'cfa', 'Cfa006290' => 'cfa', 'Cfa010080' => 'cfa', 'Cfa011376' => 'cfa', 'Cfa011576' => 'cfa', 'Cfa011577' => 'cfa', 'Cfa014389' => 'cfa', 'Ciclev10006044m.g' => 'ccl', 'Ciclev10006954m.g' => 'ccl', 'Ciclev10015131m.g' => 'ccl', 'Ciclev10015580m.g' => 'ccl', 'Ciclev10028359m.g' => 'ccl', 'Ciclev10028573m.g' => 'ccl', 'CiPaw.03G159300' => 'cil', 'CiPaw.04G115100' => 'cil', 'CiPaw.09G092800' => 'cil', 'CiPaw.10G071800' => 'cil', 'CiPaw.13G105800' => 'cil', 'CiPaw.13G141000' => 'cil', 'CiPaw.14G103400' => 'cil', 'ClCG01G012700' => 'cla', 'ClCG01G012720' => 'cla', 'ClCG01G021920' => 'cla', 'ClCG02G008870' => 'cla', 'ClCG02G020840' => 'cla', 'ClCG02G021930' => 'cla', 'COL.COLO4_19302' => 'col', 'COL.COLO4_25262' => 'col', 'COL.COLO4_31788' => 'col', 'Cpa.g.c34684' => 'cpa', 'Cpa.g.c36520.1' => 'cpa', 'Cpa.g.c45626' => 'cpa', 'Cpa.g.sc121.17' => 'cpa', 'Cpa.g.sc13.22' => 'cpa', 'Cpa.g.sc87.88' => 'cpa', 'Cre06.g261800' => 'cre', 'CsaV3_1G014500' => 'csa', 'CsaV3_1G014510' => 'csa', 'CsaV3_2G034880' => 'csa', 'CsaV3_6G014760' => 'csa', 'CsaV3_6G021500' => 'csa', 'CsaV3_6G048980' => 'csa', 'CSS0002511' => 'camsi', 'CSS0007556' => 'camsi', 'CSS0008532' => 'camsi', 'CSS0009709' => 'camsi', 'CSS0010486' => 'camsi', 'CSS0016768' => 'camsi', 'CSS0023512' => 'camsi', 'CSS0025341' => 'camsi', 'CSS0027999' => 'camsi', 'CSS0028944' => 'camsi', 'CSS0032292' => 'camsi', 'CSS0032464' => 'camsi', 'CSS0037153' => 'camsi', 'CSS0039256' => 'camsi', 'CSS0048392' => 'camsi', 'CSS0050458' => 'camsi', 'DCAR_004224' => 'dca', 'DCAR_006147' => 'dca', 'DCAR_006465' => 'dca', 'DCAR_008159' => 'dca', 'DCAR_012164' => 'dca', 'DCAR_019764' => 'dca', 'Dinv05418' => 'din', 'Dinv10839' => 'din', 'Dinv12521' => 'din', 'Dinv13900' => 'din', 'Dinv29426' => 'din', 'Duzib150G0263' => 'dzi', 'Duzib168G1178' => 'dzi', 'Duzib168G1924' => 'dzi', 'Duzib170G0299' => 'dzi', 'Duzib170G0813' => 'dzi', 'Duzib235G1128' => 'dzi', 'Duzib248G1060' => 'dzi', 'ECA232G1910' => 'eca', 'ECA233G4621' => 'eca', 'ECA238G1216' => 'eca', 'ECA238G1784' => 'eca', 'ECA248G1242' => 'eca', 'EL10Ac8g20071' => 'bvu', 'EL10Ac9g21086' => 'bvu', 'EL10Ac9g22407' => 'bvu', 'EL10Ac9g22412' => 'bvu', 'Eucgr.A01119' => 'egr', 'Eucgr.E04043' => 'egr', 'Eucgr.J00428' => 'egr', 'Eucgr.J00958' => 'egr', 'FAN11G3091' => 'fan', 'FAN11G3651' => 'fan', 'FAN16G2566' => 'fan', 'FAN21G3155' => 'fan', 'FAN21G3400' => 'fan', 'FAN21G3543' => 'fan', 'FAN25G0234' => 'fan', 'FAN25G1422' => 'fan', 'FAN25G3392' => 'fan', 'FvH4_3g01940' => 'fve', 'FvH4_3g29870' => 'fve', 'FvH4_3g33680' => 'fve', 'Glyma.09G004200' => 'gma', 'Glyma.11G151288' => 'gma', 'Glyma.11G189100' => 'gma', 'Glyma.12G072500' => 'gma', 'Glyma.12G085500' => 'gma', 'Glyma.12G181800' => 'gma', 'Glyma.12G193000' => 'gma', 'Glyma.13G309300' => 'gma', 'Glyma.13G319000' => 'gma', 'Glyma.17G012600' => 'gma', 'Gohir.A06G148600' => 'ghi', 'Gohir.A07G115800' => 'ghi', 'Gohir.A08G003600' => 'ghi', 'Gohir.A09G093300' => 'ghi', 'Gohir.A09G105400' => 'ghi', 'Gohir.A09G105500' => 'ghi', 'Gohir.D06G154600' => 'ghi', 'Gohir.D07G120200' => 'ghi', 'Gohir.D08G013900' => 'ghi', 'Gohir.D09G093100' => 'ghi', 'Gohir.D09G102200' => 'ghi', 'Gohir.D09G102300' => 'ghi', 'Gorai.001G129400' => 'gra', 'Gorai.004G008200' => 'gra', 'Gorai.006G109800' => 'gra', 'Gorai.006G119500' => 'gra', 'Gorai.006G121300' => 'gra', 'Gorai.010G180700' => 'gra', 'GSVIVG01012716001' => 'vvi', 'GSVIVG01025118001' => 'vvi', 'GSVIVG01030439001' => 'vvi', 'GSVIVG01031397001' => 'vvi', 'HanXRQChr01g0004201' => 'han', 'HanXRQChr02g0054941' => 'han', 'HanXRQChr05g0141811' => 'han', 'HanXRQChr07g0197751' => 'han', 'HanXRQChr11g0346691' => 'han', 'HanXRQChr13g0396971' => 'han', 'HanXRQChr14g0432951' => 'han', 'HanXRQChr14g0452001' => 'han', 'HanXRQChr15g0496681' => 'han', 'HanXRQChr17g0557491' => 'han', 'HanXRQChr17g0557501' => 'han', 'Haze_06809' => 'cav', 'Haze_12852' => 'cav', 'Haze_15850' => 'cav', 'Haze_23446' => 'cav', 'Haze_23942' => 'cav', 'Haze_23943' => 'cav', 'Hma1.2p1_0091F.1_g046450' => 'hma', 'Hma1.2p1_0128F.1_g059910' => 'hma', 'Hma1.2p1_0249F.1_g102260' => 'hma', 'Hma1.2p1_0453F.1_g156190' => 'hma', 'Hma1.2p1_0695F.1_g204380' => 'hma', 'Hma1.2p1_0749F.1_g212650' => 'hma', 'Hma1.2p1_2156F.1_g315420' => 'hma', 'Hma1.2p1_2686F.1_g326940' => 'hma', 'HPP92_006428' => 'vpl', 'HPP92_012069' => 'vpl', 'HPP92_014129' => 'vpl', 'HPP92_014133' => 'vpl', 'HPP92_017315' => 'vpl', 'HPP92_026445' => 'vpl', 'HPP92_026446' => 'vpl', 'Hund00774' => 'sun', 'Hund07682' => 'sun', 'Hund21413' => 'sun', 'Hund23462' => 'sun', 'Hund23463' => 'sun', 'Lalb_Chr03g0027911' => 'lal', 'Lalb_Chr13g0304271' => 'lal', 'Lalb_Chr19g0137471' => 'lal', 'Lalb_Chr22g0350651' => 'lal', 'Lalb_Chr24g0395151' => 'lal', 'Lj1A1231T40' => 'lonja', 'Lj1A221T48' => 'lonja', 'Lj1C924T12' => 'lonja', 'Lj2C993G6' => 'lonja', 'Lj3g0005790' => 'lja', 'Lj3g0015432' => 'lja', 'Lj3g0017722' => 'lja', 'Lj3g0018497' => 'lja', 'Lj4g0025071' => 'lja', 'Lsat_1_v5_gn_1_129680' => 'lsa', 'Lsat_1_v5_gn_2_25321' => 'lsa', 'Lsat_1_v5_gn_2_95461' => 'lsa', 'Lsat_1_v5_gn_4_159620' => 'lsa', 'Lsat_1_v5_gn_6_41301' => 'lsa', 'Lsat_1_v5_gn_6_74660' => 'lsa', 'Lsat_1_v5_gn_7_11520' => 'lsa', 'Lsat_1_v5_gn_9_67680' => 'lsa', 'Manes.04G008300' => 'mes', 'Manes.04G008400' => 'mes', 'Manes.04G026500' => 'mes', 'Manes.10G135300' => 'mes', 'Manes.11G157300' => 'mes', 'Manes.12G074000' => 'mes', 'Manes.16G006200' => 'mes', 'Manes.17G026400' => 'mes', 'Mapoly0024s0086' => 'mpo', 'Mapoly0024s0087' => 'mpo', 'Mapoly0071s0057' => 'mpo', 'Mapoly0204s0012' => 'mpo', 'MBI04_g37681_MAGBIO' => 'mbi', 'MBI05_g17779_MAGBIO' => 'mbi', 'MBI12_g31184_MAGBIO' => 'mbi', 'MBI17_g11083_MAGBIO' => 'mbi', 'MBI18_g03883_MAGBIO' => 'mbi', 'MBI18_g28940_MAGBIO' => 'mbi', 'MCO01G690' => 'mco', 'MD03G1109900' => 'mdo', 'MD03G1134800' => 'mdo', 'MD05G1348000' => 'mdo', 'MD10G1322400' => 'mdo', 'MD11G1123300' => 'mdo', 'MD11G1157600' => 'mdo', 'Medtr2g084875' => 'mtr', 'Medtr2g088130' => 'mtr', 'Medtr4g055310' => 'mtr', 'Medtr4g061070' => 'mtr', 'Medtr4g132250' => 'mtr', 'MELO3C004795.2' => 'cme', 'MELO3C004797.2' => 'cme', 'MELO3C007396.2' => 'cme', 'MELO3C019277.2' => 'cme', 'MELO3C021449.2' => 'cme', 'MELO3C025736.2' => 'cme', 'Migut.D02175' => 'egut', 'Migut.H01573' => 'egut', 'Migut.M01327' => 'egut', 'Migut.N02513' => 'egut', 'MSTRG.14638' => 'ama', 'MSTRG.18632' => 'ama', 'MSTRG.7203' => 'ama', 'Nitab4.5_0000533g0140' => 'nta', 'Nitab4.5_0000888g0150' => 'nta', 'Nitab4.5_0001453g0040' => 'nta', 'Nitab4.5_0002827g0090' => 'nta', 'Nitab4.5_0003082g0040' => 'nta', 'Nitab4.5_0007799g0040' => 'nta', 'Nitab4.5_0008983g0010' => 'nta', 'Nitab4.5_0009017g0020' => 'nta', 'Nn1g02132' => 'nnu', 'Nn1g03492' => 'nnu', 'Nn1g03493' => 'nnu', 'Nn1g03494' => 'nnu', 'Nn1g07164' => 'nnu', 'Nn1g07291' => 'nnu', 'Nn2g10655' => 'nnu', 'Nn2g11652' => 'nnu', 'Nn2g14008' => 'nnu', 'Nn3g17476' => 'nnu', 'Nn3g17477' => 'nnu', 'Nn4g22370' => 'nnu', 'Nn4g25255' => 'nnu', 'Nn5g27755' => 'nnu', 'Nn6g34260' => 'nnu', 'Nn6g35041' => 'nnu', 'Oeu005924.1' => 'oeu', 'Oeu008383.1' => 'oeu', 'Oeu014928.1' => 'oeu', 'Oeu019889.1' => 'oeu', 'Oeu022271.1' => 'oeu', 'Oeu025271.1' => 'oeu', 'Oeu036302.1' => 'oeu', 'Oeu044100.1' => 'oeu', 'Os01g0528300' => 'osa', 'Os03g0286200' => 'osa', 'Os04g0406600' => 'osa', 'Os07g0512000' => 'osa', 'Os07g0694600' => 'osa', 'Os08g0411000' => 'osa', 'Os09g0565700' => 'osa', 'Os09g0566050' => 'osa', 'Os10g0523700' => 'osa', 'Peaxi162Scf00002g00514' => 'pax', 'Peaxi162Scf00047g01817' => 'pax', 'Peaxi162Scf00114g00001' => 'pax', 'Peaxi162Scf00147g00613' => 'pax', 'Peaxi162Scf00389g00425' => 'pax', 'PGR042G1139' => 'pgr', 'PGR042G3273' => 'pgr', 'PGR102G2180' => 'pgr', 'PGR119G0234' => 'pgr', 'PGR119G0668' => 'pgr', 'PGSC0003DMG400007122' => 'stu', 'PGSC0003DMG400016478' => 'stu', 'PGSC0003DMG400025374' => 'stu', 'PGSC0003DMG400026536' => 'stu', 'Phvul.003G079600' => 'pvu', 'Phvul.005G115600' => 'pvu', 'Phvul.005G127100' => 'pvu', 'Phvul.006G149500' => 'pvu', 'Phvul.006G149600' => 'pvu', 'Phvul.011G071800' => 'pvu', 'Phvul.011G090400' => 'pvu', 'Potri.004G013400' => 'ptr', 'Potri.004G188100' => 'ptr', 'Potri.008G195500' => 'ptr', 'Potri.009G148800' => 'ptr', 'Potri.011G004700' => 'ptr', 'Pp3c17_22810' => 'ppa', 'Pp3c18_4480' => 'ppa', 'Pp3c19_13030' => 'ppa', 'Pp3c1_33620' => 'ppa', 'Pp3c2_9380' => 'ppa', 'PRCOL_00001023' => 'pco', 'Prupe.3G216300' => 'ppe', 'Prupe.4G019500' => 'ppe', 'Prupe.6G092500' => 'ppe', 'Prupe.6G119200' => 'ppe', 'Psat0s1945g0080' => 'psa', 'Psat0s4167g0040' => 'psa', 'Psat1g185800' => 'psa', 'Psat4g006440' => 'psa', 'Psat4g006480' => 'psa', 'Psat4g168120' => 'psa', 'Psat5g255680' => 'psa', 'Psat5g261760' => 'psa', 'Psat7g222120' => 'psa', 'PSO063G7252' => 'pso', 'PSO170G4778' => 'pso', 'PSO210G2249' => 'pso', 'PSO339G2411' => 'pso', 'PSO339G2457' => 'pso', 'PSO339G2854' => 'pso', 'PSO339G4288' => 'pso', 'PSO339G4615' => 'pso', 'PSO384G2796' => 'pso', 'PSO384G2940' => 'pso', 'PSO384G4227' => 'pso', 'PSO478G1425' => 'pso', 'PSO541G3863' => 'pso', 'PSO675G0507' => 'pso', 'PSO782G0338' => 'pso', 'PSO832G0644' => 'pso', 'QL01p013664' => 'qlo', 'QL01p036598' => 'qlo', 'QL05p072984' => 'qlo', 'QL08p005768' => 'qlo', 'QL08p032743' => 'qlo', 'QL93p0073_0439' => 'qlo', 'QL93p0073_0444' => 'qlo', 'RcHm_v2.0_Chr5g0002851' => 'rch', 'RcHm_v2.0_Chr5g0055201' => 'rch', 'RcHm_v2.0_Chr5g0061191' => 'rch', 'RcHm_v2.0_Chr7g0203231' => 'rch', 'Rhsim01G0208100' => 'rsi', 'Rhsim01G0208200' => 'rsi', 'Rhsim02G0106500' => 'rsi', 'Rhsim03G0107900' => 'rsi', 'Rhsim06G0163400' => 'rsi', 'Rhsim13G0105200' => 'rsi', 'Sabra04G0006300' => 'sbr', 'Sabra04G0127000' => 'sbr', 'Sabra08G0148700' => 'sbr', 'Sabra09G0117400' => 'sbr', 'SalBow1G3326' => 'sbo', 'SalBow3G3228' => 'sbo', 'SalBow6G1634' => 'sbo', 'SalBow6G3603' => 'sbo', 'SalBow6G5266' => 'sbo', 'SalBow7G2265' => 'sbo', 'SalBow8G0850' => 'sbo', 'SalBow8G2592' => 'sbo', 'Sc05g0009240' => 'sci', 'Sc12g0002300' => 'sci', 'Sc21g0000100' => 'sci', 'Sc21g0004720' => 'sci', 'Sed0002949' => 'sed', 'Sed0004114' => 'sed', 'Sed0004306' => 'sed', 'Sed0006172' => 'sed', 'Sed0008413' => 'sed', 'Sed0013809' => 'sed', 'Sed0019556' => 'sed', 'SEGI_03570' => 'sgi', 'SEGI_07859' => 'sgi', 'SEGI_15042' => 'sgi', 'SEGI_16263' => 'sgi', 'SEGI_16552' => 'sgi', 'SEGI_24331' => 'sgi', 'SEGI_27316' => 'sgi', 'SEGI_29521' => 'sgi', 'SEGI_41342' => 'sgi', 'SGA_v2.0_scaffold27G11617' => 'sas', 'SGA_v2.0_scaffold316G48428' => 'sas', 'SGA_v2.0_scaffold49G18261' => 'sas', 'SGA_v2.0_scaffold7G03831' => 'sas', 'SGA_v2.0_scaffold93G28359' => 'sas', 'SHI02210' => 'shi', 'SHI06028' => 'shi', 'SHI06321' => 'shi', 'SMO111G0012' => 'smo', 'SMO228G0080' => 'smo', 'SMO356G0756' => 'smo', 'Solyc02g080620.3' => 'sly', 'Solyc06g074530.1' => 'sly', 'Solyc11g066890.1' => 'sly', 'Solyc11g072520.3' => 'sly', 'Sopen02g025330' => 'spe', 'Sopen06g031000' => 'spe', 'Sopen09g008240' => 'spe', 'Sopen09g025210' => 'spe', 'Sopen11g026600' => 'spe', 'Sopen11g030170' => 'spe', 'Sp1g10420' => 'spa', 'Sp3g06570' => 'spa', 'Sp4g10660' => 'spa', 'Sp5g16460' => 'spa', 'Sp6g22710' => 'spa', 'TAR365G0112' => 'tar', 'TAR369G0717' => 'tar', 'TAR374G0976' => 'tar', 'TAR623G1128' => 'tar', 'TAR626G1937' => 'tar', 'TAR627G0123' => 'tar', 'TAR628G0305' => 'tar', 'TAR636G1176' => 'tar', 'TAR636G2442' => 'tar', 'THA.LOC104800556' => 'tha', 'THA.LOC104809501' => 'tha', 'THA.LOC104815126' => 'tha', 'THA.LOC104815732' => 'tha', 'THA.LOC104823528' => 'tha', 'Thecc.02G365600' => 'tca', 'Thecc.06G222300' => 'tca', 'Thecc.09G261800' => 'tca', 'Thecc.09G291400' => 'tca', 'Thhalv10003028m.g' => 'esa', 'Thhalv10007886m.g' => 'esa', 'Thhalv10016085m.g' => 'esa', 'Thhalv10016681m.g' => 'esa', 'Thhalv10020951m.g' => 'esa', 'TPR.G15598' => 'tpr', 'TPR.G29305' => 'tpr', 'TPR.G32395' => 'tpr', 'TPR.G36998' => 'tpr', 'TPR.G4227' => 'tpr', 'TWI18G1433' => 'twi', 'TWI31G0755' => 'twi', 'TWI38G0912' => 'twi', 'TWI75G1097' => 'twi', 'TWI75G1619' => 'twi', 'TWI79G1336' => 'twi', 'unitig_0.g943' => 'ugi', 'unitig_0.g944' => 'ugi', 'unitig_22.g6646' => 'ugi', 'unitig_37.g12681' => 'ugi', 'unitig_8.g3290' => 'ugi', 'vmacro03278' => 'vma', 'vmacro12197' => 'vma', 'vmacro14478' => 'vma', 'vmacro15787' => 'vma', 'vmacro15789' => 'vma', 'vmacro15790' => 'vma', 'vmacro15806' => 'vma', 'vmacro22907' => 'vma', 'vmacro22908' => 'vma', 'vmacro22909' => 'vma', 'vmacro23108' => 'vma', 'VMungo0540G0540' => 'vmu', 'VMungo0540G2468' => 'vmu', 'VMungo1080G0390' => 'vmu', 'VMungo1080G1165' => 'vmu', 'VMungo1127G0170' => 'vmu', 'VMungo1127G2099' => 'vmu', 'VMungo1215G3013' => 'vmu', 'Zm00001eb013110' => 'zma', 'Zm00001eb084260' => 'zma', 'Zm00001eb096110' => 'zma', 'Zm00001eb217510' => 'zma', 'Zm00001eb322550' => 'zma', 'Zm00001eb390770' => 'zma', 'Zm00001eb397170' => 'zma', 'Zm00001eb404610' => 'zma', 'Zm00001eb421790' => 'zma' ), 'gf_id' => 'HOM05D000911', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000911' ), 'data_identifier' => 'HOM05D000911', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000911', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27780' => 'bna', 'A03p35380' => 'bna', 'A04p21160' => 'bna', 'A05p40570' => 'bna', 'A06p26900' => 'bna', 'A08p33230' => 'bna', 'A09p65960' => 'bna', 'A10p18290' => 'bna', 'Aa31LG1G12990' => 'aar', 'Aa31LG1G2980' => 'aar', 'Aa31LG4G14320' => 'aar', 'Aa31LG7G11800' => 'aar', 'Aa31sc36G50' => 'aar', 'Aa31sc36G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3721' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5459' => 'aag', 'Actinidia03028' => 'ach', 'Actinidia03753' => 'ach', 'Actinidia04187' => 'ach', 'Actinidia05509' => 'ach', 'Actinidia24180' => 'ach', 'Actinidia26906' => 'ach', 'Actinidia37097' => 'ach', 'Actinidia38249' => 'ach', 'Ah.01g003470' => 'amhyb', 'Ah.01g004580' => 'amhyb', 'Ah.01g014850' => 'amhyb', 'Ah.01g016830' => 'amhyb', 'Ah.14g088000' => 'amhyb', 'AL1G22980' => 'aly', 'AL3G18990' => 'aly', 'AL4G22440' => 'aly', 'AL4G33180' => 'aly', 'AL5G22920' => 'aly', 'AL6G33660' => 'aly', 'AL8G20720' => 'aly', 'Aqoxy1G00935' => 'aox', 'Aqoxy1G02094' => 'aox', 'Aqoxy2G01239' => 'aox', 'Aqoxy4G01870' => 'aox', 'Aqoxy7G00450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.36ZVTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71EM27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5D6C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH3WRE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3NCM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RIM768' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YB5YRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z36GDV' => 'arhy', 'AT1G08250' => 'ath', 'AT1G11790' => 'ath', 'AT2G27820' => 'ath', 'AT3G07630' => 'ath', 'AT3G44720' => 'ath', 'AT5G22630' => 'ath', 'ATR0693G304' => 'atr', 'ATR0794G109' => 'atr', 'ATR0820G120' => 'atr', 'ATR1159G064' => 'atr', 'Atru.chr10.2239' => 'acertr', 'Atru.chr3.3371' => 'acertr', 'Atru.chr6.3202' => 'acertr', 'AUR62006499' => 'cqu', 'AUR62012718' => 'cqu', 'AUR62021938' => 'cqu', 'AUR62023932' => 'cqu', 'AUR62025034' => 'cqu', 'AUR62025035' => 'cqu', 'AUR62038307' => 'cqu', 'AUR62043466' => 'cqu', 'BcaB02g10748' => 'bca', 'BcaB03g13231' => 'bca', 'BcaB03g14689' => 'bca', 'BcaB05g22716' => 'bca', 'BcaB06g28172' => 'bca', 'BcaB08g36413' => 'bca', 'BcaC01g02186' => 'bca', 'BcaC01g04272' => 'bca', 'BcaC02g08080' => 'bca', 'BcaC02g08227' => 'bca', 'BcaC03g13901' => 'bca', 'BcaC04g19593' => 'bca', 'BcaC04g20874' => 'bca', 'BcaC05g29557' => 'bca', 'BcaC06g35505' => 'bca', 'BcaC07g41954' => 'bca', 'BcaC07g41955' => 'bca', 'BcaC07g41956' => 'bca', 'BcaC07g42519' => 'bca', 'BcaC07g42520' => 'bca', 'BcaC07g42523' => 'bca', 'BcaC07g42524' => 'bca', 'BcaC07g42525' => 'bca', 'BcaC08g47480' => 'bca', 'BcaC08g47481' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00530' => 'bna', 'BolC2t07178H' => 'bol', 'BolC3t16567H' => 'bol', 'BolC4t27234H' => 'bol', 'BolC5t29728H' => 'bol', 'BolC5t34622H' => 'bol', 'BolC6t40321H' => 'bol', 'BolC7t42028H' => 'bol', 'BolC8t49125H' => 'bol', 'BolC8t52538H' => 'bol', 'BolC8t52539H' => 'bol', 'BolC9t56681H' => 'bol', 'BolC9t58266H' => 'bol', 'BolSC21t60294H' => 'bol', 'BraA02t05670Z' => 'bra', 'BraA03t12716Z' => 'bra', 'BraA04t17685Z' => 'bra', 'BraA05t22788Z' => 'bra', 'BraA06t24032Z' => 'bra', 'BraA06t25625Z' => 'bra', 'BraA07t27930Z' => 'bra', 'BraA08t35242Z' => 'bra', 'BraA09t38609Z' => 'bra', 'BraA10t43905Z' => 'bra', 'C02p11060' => 'bna', 'C03p42990' => 'bna', 'C03p67310' => 'bna', 'C04p56990' => 'bna', 'C04p58660' => 'bna', 'C05p09890' => 'bna', 'C05p59680' => 'bna', 'C06p19830' => 'bna', 'C06p53040' => 'bna', 'C07p15230' => 'bna', 'C08p50070' => 'bna', 'C08p50090' => 'bna', 'C09p38330' => 'bna', 'C09p53940' => 'bna', 'CAN.G1014.1' => 'can', 'CAN.G644.30' => 'can', 'CAN.G84.47' => 'can', 'CAN.G919.8' => 'can', 'CANSAT54G0113' => 'cansat', 'CANSAT54G1286' => 'cansat', 'CANSAT64G1020' => 'cansat', 'CARHR008080' => 'chi', 'CARHR008090' => 'chi', 'CARHR012130' => 'chi', 'CARHR038390' => 'chi', 'CARHR082330' => 'chi', 'CARHR120520' => 'chi', 'CARHR151470' => 'chi', 'CARHR190950' => 'chi', 'Carub.0001s0760' => 'cru', 'Carub.0001s1146' => 'cru', 'Carub.0003s0721' => 'cru', 'Carub.0004s0858' => 'cru', 'Carub.0005s1040' => 'cru', 'Carub.0006s2035' => 'cru', 'Carub.0015s0005' => 'cru', 'Ca_01607_v3' => 'car', 'Ca_01677_v3' => 'car', 'Ca_06087_v3' => 'car', 'Ca_19238_v3' => 'car', 'Ca_19373_v3' => 'car', 'Ca_21079_v3' => 'car', 'CBR_g54016' => 'cbr', 'CBR_g54018' => 'cbr', 'CBR_g54020' => 'cbr', 'Cc01_g09780' => 'ccan', 'Cc01_g11680' => 'ccan', 'Cc02_g15610' => 'ccan', 'Cc05_g04350' => 'ccan', 'Cc09_g01580' => 'ccan', 'CDE01G0795' => 'cde', 'CDE02G2024' => 'cde', 'CDE02G2260' => 'cde', 'CDE02G4561' => 'cde', 'CDE05G2733' => 'cde', 'CDE05G3422' => 'cde', 'CDE06G2003' => 'cde', 'CDE08G0576' => 'cde', 'CDE09G0048' => 'cde', 'CDE11G0805' => 'cde', 'Cfa003644' => 'cfa', 'Cfa006290' => 'cfa', 'Cfa010080' => 'cfa', 'Cfa011376' => 'cfa', 'Cfa011576' => 'cfa', 'Cfa011577' => 'cfa', 'Cfa014389' => 'cfa', 'Ciclev10006044m.g' => 'ccl', 'Ciclev10006954m.g' => 'ccl', 'Ciclev10015131m.g' => 'ccl', 'Ciclev10015580m.g' => 'ccl', 'Ciclev10028359m.g' => 'ccl', 'Ciclev10028573m.g' => 'ccl', 'CiPaw.03G159300' => 'cil', 'CiPaw.04G115100' => 'cil', 'CiPaw.09G092800' => 'cil', 'CiPaw.10G071800' => 'cil', 'CiPaw.13G105800' => 'cil', 'CiPaw.13G141000' => 'cil', 'CiPaw.14G103400' => 'cil', 'ClCG01G012700' => 'cla', 'ClCG01G012720' => 'cla', 'ClCG01G021920' => 'cla', 'ClCG02G008870' => 'cla', 'ClCG02G020840' => 'cla', 'ClCG02G021930' => 'cla', 'COL.COLO4_19302' => 'col', 'COL.COLO4_25262' => 'col', 'COL.COLO4_31788' => 'col', 'Cpa.g.c34684' => 'cpa', 'Cpa.g.c36520.1' => 'cpa', 'Cpa.g.c45626' => 'cpa', 'Cpa.g.sc121.17' => 'cpa', 'Cpa.g.sc13.22' => 'cpa', 'Cpa.g.sc87.88' => 'cpa', 'Cre06.g261800' => 'cre', 'CsaV3_1G014500' => 'csa', 'CsaV3_1G014510' => 'csa', 'CsaV3_2G034880' => 'csa', 'CsaV3_6G014760' => 'csa', 'CsaV3_6G021500' => 'csa', 'CsaV3_6G048980' => 'csa', 'CSS0002511' => 'camsi', 'CSS0007556' => 'camsi', 'CSS0008532' => 'camsi', 'CSS0009709' => 'camsi', 'CSS0010486' => 'camsi', 'CSS0016768' => 'camsi', 'CSS0023512' => 'camsi', 'CSS0025341' => 'camsi', 'CSS0027999' => 'camsi', 'CSS0028944' => 'camsi', 'CSS0032292' => 'camsi', 'CSS0032464' => 'camsi', 'CSS0037153' => 'camsi', 'CSS0039256' => 'camsi', 'CSS0048392' => 'camsi', 'CSS0050458' => 'camsi', 'DCAR_004224' => 'dca', 'DCAR_006147' => 'dca', 'DCAR_006465' => 'dca', 'DCAR_008159' => 'dca', 'DCAR_012164' => 'dca', 'DCAR_019764' => 'dca', 'Dinv05418' => 'din', 'Dinv10839' => 'din', 'Dinv12521' => 'din', 'Dinv13900' => 'din', 'Dinv29426' => 'din', 'Duzib150G0263' => 'dzi', 'Duzib168G1178' => 'dzi', 'Duzib168G1924' => 'dzi', 'Duzib170G0299' => 'dzi', 'Duzib170G0813' => 'dzi', 'Duzib235G1128' => 'dzi', 'Duzib248G1060' => 'dzi', 'ECA232G1910' => 'eca', 'ECA233G4621' => 'eca', 'ECA238G1216' => 'eca', 'ECA238G1784' => 'eca', 'ECA248G1242' => 'eca', 'EL10Ac8g20071' => 'bvu', 'EL10Ac9g21086' => 'bvu', 'EL10Ac9g22407' => 'bvu', 'EL10Ac9g22412' => 'bvu', 'Eucgr.A01119' => 'egr', 'Eucgr.E04043' => 'egr', 'Eucgr.J00428' => 'egr', 'Eucgr.J00958' => 'egr', 'FAN11G3091' => 'fan', 'FAN11G3651' => 'fan', 'FAN16G2566' => 'fan', 'FAN21G3155' => 'fan', 'FAN21G3400' => 'fan', 'FAN21G3543' => 'fan', 'FAN25G0234' => 'fan', 'FAN25G1422' => 'fan', 'FAN25G3392' => 'fan', 'FvH4_3g01940' => 'fve', 'FvH4_3g29870' => 'fve', 'FvH4_3g33680' => 'fve', 'Glyma.09G004200' => 'gma', 'Glyma.11G151288' => 'gma', 'Glyma.11G189100' => 'gma', 'Glyma.12G072500' => 'gma', 'Glyma.12G085500' => 'gma', 'Glyma.12G181800' => 'gma', 'Glyma.12G193000' => 'gma', 'Glyma.13G309300' => 'gma', 'Glyma.13G319000' => 'gma', 'Glyma.17G012600' => 'gma', 'Gohir.A06G148600' => 'ghi', 'Gohir.A07G115800' => 'ghi', 'Gohir.A08G003600' => 'ghi', 'Gohir.A09G093300' => 'ghi', 'Gohir.A09G105400' => 'ghi', 'Gohir.A09G105500' => 'ghi', 'Gohir.D06G154600' => 'ghi', 'Gohir.D07G120200' => 'ghi', 'Gohir.D08G013900' => 'ghi', 'Gohir.D09G093100' => 'ghi', 'Gohir.D09G102200' => 'ghi', 'Gohir.D09G102300' => 'ghi', 'Gorai.001G129400' => 'gra', 'Gorai.004G008200' => 'gra', 'Gorai.006G109800' => 'gra', 'Gorai.006G119500' => 'gra', 'Gorai.006G121300' => 'gra', 'Gorai.010G180700' => 'gra', 'GSVIVG01012716001' => 'vvi', 'GSVIVG01025118001' => 'vvi', 'GSVIVG01030439001' => 'vvi', 'GSVIVG01031397001' => 'vvi', 'HanXRQChr01g0004201' => 'han', 'HanXRQChr02g0054941' => 'han', 'HanXRQChr05g0141811' => 'han', 'HanXRQChr07g0197751' => 'han', 'HanXRQChr11g0346691' => 'han', 'HanXRQChr13g0396971' => 'han', 'HanXRQChr14g0432951' => 'han', 'HanXRQChr14g0452001' => 'han', 'HanXRQChr15g0496681' => 'han', 'HanXRQChr17g0557491' => 'han', 'HanXRQChr17g0557501' => 'han', 'Haze_06809' => 'cav', 'Haze_12852' => 'cav', 'Haze_15850' => 'cav', 'Haze_23446' => 'cav', 'Haze_23942' => 'cav', 'Haze_23943' => 'cav', 'Hma1.2p1_0091F.1_g046450' => 'hma', 'Hma1.2p1_0128F.1_g059910' => 'hma', 'Hma1.2p1_0249F.1_g102260' => 'hma', 'Hma1.2p1_0453F.1_g156190' => 'hma', 'Hma1.2p1_0695F.1_g204380' => 'hma', 'Hma1.2p1_0749F.1_g212650' => 'hma', 'Hma1.2p1_2156F.1_g315420' => 'hma', 'Hma1.2p1_2686F.1_g326940' => 'hma', 'HPP92_006428' => 'vpl', 'HPP92_012069' => 'vpl', 'HPP92_014129' => 'vpl', 'HPP92_014133' => 'vpl', 'HPP92_017315' => 'vpl', 'HPP92_026445' => 'vpl', 'HPP92_026446' => 'vpl', 'Hund00774' => 'sun', 'Hund07682' => 'sun', 'Hund21413' => 'sun', 'Hund23462' => 'sun', 'Hund23463' => 'sun', 'Lalb_Chr03g0027911' => 'lal', 'Lalb_Chr13g0304271' => 'lal', 'Lalb_Chr19g0137471' => 'lal', 'Lalb_Chr22g0350651' => 'lal', 'Lalb_Chr24g0395151' => 'lal', 'Lj1A1231T40' => 'lonja', 'Lj1A221T48' => 'lonja', 'Lj1C924T12' => 'lonja', 'Lj2C993G6' => 'lonja', 'Lj3g0005790' => 'lja', 'Lj3g0015432' => 'lja', 'Lj3g0017722' => 'lja', 'Lj3g0018497' => 'lja', 'Lj4g0025071' => 'lja', 'Lsat_1_v5_gn_1_129680' => 'lsa', 'Lsat_1_v5_gn_2_25321' => 'lsa', 'Lsat_1_v5_gn_2_95461' => 'lsa', 'Lsat_1_v5_gn_4_159620' => 'lsa', 'Lsat_1_v5_gn_6_41301' => 'lsa', 'Lsat_1_v5_gn_6_74660' => 'lsa', 'Lsat_1_v5_gn_7_11520' => 'lsa', 'Lsat_1_v5_gn_9_67680' => 'lsa', 'Manes.04G008300' => 'mes', 'Manes.04G008400' => 'mes', 'Manes.04G026500' => 'mes', 'Manes.10G135300' => 'mes', 'Manes.11G157300' => 'mes', 'Manes.12G074000' => 'mes', 'Manes.16G006200' => 'mes', 'Manes.17G026400' => 'mes', 'Mapoly0024s0086' => 'mpo', 'Mapoly0024s0087' => 'mpo', 'Mapoly0071s0057' => 'mpo', 'Mapoly0204s0012' => 'mpo', 'MBI04_g37681_MAGBIO' => 'mbi', 'MBI05_g17779_MAGBIO' => 'mbi', 'MBI12_g31184_MAGBIO' => 'mbi', 'MBI17_g11083_MAGBIO' => 'mbi', 'MBI18_g03883_MAGBIO' => 'mbi', 'MBI18_g28940_MAGBIO' => 'mbi', 'MCO01G690' => 'mco', 'MD03G1109900' => 'mdo', 'MD03G1134800' => 'mdo', 'MD05G1348000' => 'mdo', 'MD10G1322400' => 'mdo', 'MD11G1123300' => 'mdo', 'MD11G1157600' => 'mdo', 'Medtr2g084875' => 'mtr', 'Medtr2g088130' => 'mtr', 'Medtr4g055310' => 'mtr', 'Medtr4g061070' => 'mtr', 'Medtr4g132250' => 'mtr', 'MELO3C004795.2' => 'cme', 'MELO3C004797.2' => 'cme', 'MELO3C007396.2' => 'cme', 'MELO3C019277.2' => 'cme', 'MELO3C021449.2' => 'cme', 'MELO3C025736.2' => 'cme', 'Migut.D02175' => 'egut', 'Migut.H01573' => 'egut', 'Migut.M01327' => 'egut', 'Migut.N02513' => 'egut', 'MSTRG.14638' => 'ama', 'MSTRG.18632' => 'ama', 'MSTRG.7203' => 'ama', 'Nitab4.5_0000533g0140' => 'nta', 'Nitab4.5_0000888g0150' => 'nta', 'Nitab4.5_0001453g0040' => 'nta', 'Nitab4.5_0002827g0090' => 'nta', 'Nitab4.5_0003082g0040' => 'nta', 'Nitab4.5_0007799g0040' => 'nta', 'Nitab4.5_0008983g0010' => 'nta', 'Nitab4.5_0009017g0020' => 'nta', 'Nn1g02132' => 'nnu', 'Nn1g03492' => 'nnu', 'Nn1g03493' => 'nnu', 'Nn1g03494' => 'nnu', 'Nn1g07164' => 'nnu', 'Nn1g07291' => 'nnu', 'Nn2g10655' => 'nnu', 'Nn2g11652' => 'nnu', 'Nn2g14008' => 'nnu', 'Nn3g17476' => 'nnu', 'Nn3g17477' => 'nnu', 'Nn4g22370' => 'nnu', 'Nn4g25255' => 'nnu', 'Nn5g27755' => 'nnu', 'Nn6g34260' => 'nnu', 'Nn6g35041' => 'nnu', 'Oeu005924.1' => 'oeu', 'Oeu008383.1' => 'oeu', 'Oeu014928.1' => 'oeu', 'Oeu019889.1' => 'oeu', 'Oeu022271.1' => 'oeu', 'Oeu025271.1' => 'oeu', 'Oeu036302.1' => 'oeu', 'Oeu044100.1' => 'oeu', 'Os01g0528300' => 'osa', 'Os03g0286200' => 'osa', 'Os04g0406600' => 'osa', 'Os07g0512000' => 'osa', 'Os07g0694600' => 'osa', 'Os08g0411000' => 'osa', 'Os09g0565700' => 'osa', 'Os09g0566050' => 'osa', 'Os10g0523700' => 'osa', 'Peaxi162Scf00002g00514' => 'pax', 'Peaxi162Scf00047g01817' => 'pax', 'Peaxi162Scf00114g00001' => 'pax', 'Peaxi162Scf00147g00613' => 'pax', 'Peaxi162Scf00389g00425' => 'pax', 'PGR042G1139' => 'pgr', 'PGR042G3273' => 'pgr', 'PGR102G2180' => 'pgr', 'PGR119G0234' => 'pgr', 'PGR119G0668' => 'pgr', 'PGSC0003DMG400007122' => 'stu', 'PGSC0003DMG400016478' => 'stu', 'PGSC0003DMG400025374' => 'stu', 'PGSC0003DMG400026536' => 'stu', 'Phvul.003G079600' => 'pvu', 'Phvul.005G115600' => 'pvu', 'Phvul.005G127100' => 'pvu', 'Phvul.006G149500' => 'pvu', 'Phvul.006G149600' => 'pvu', 'Phvul.011G071800' => 'pvu', 'Phvul.011G090400' => 'pvu', 'Potri.004G013400' => 'ptr', 'Potri.004G188100' => 'ptr', 'Potri.008G195500' => 'ptr', 'Potri.009G148800' => 'ptr', 'Potri.011G004700' => 'ptr', 'Pp3c17_22810' => 'ppa', 'Pp3c18_4480' => 'ppa', 'Pp3c19_13030' => 'ppa', 'Pp3c1_33620' => 'ppa', 'Pp3c2_9380' => 'ppa', 'PRCOL_00001023' => 'pco', 'Prupe.3G216300' => 'ppe', 'Prupe.4G019500' => 'ppe', 'Prupe.6G092500' => 'ppe', 'Prupe.6G119200' => 'ppe', 'Psat0s1945g0080' => 'psa', 'Psat0s4167g0040' => 'psa', 'Psat1g185800' => 'psa', 'Psat4g006440' => 'psa', 'Psat4g006480' => 'psa', 'Psat4g168120' => 'psa', 'Psat5g255680' => 'psa', 'Psat5g261760' => 'psa', 'Psat7g222120' => 'psa', 'PSO063G7252' => 'pso', 'PSO170G4778' => 'pso', 'PSO210G2249' => 'pso', 'PSO339G2411' => 'pso', 'PSO339G2457' => 'pso', 'PSO339G2854' => 'pso', 'PSO339G4288' => 'pso', 'PSO339G4615' => 'pso', 'PSO384G2796' => 'pso', 'PSO384G2940' => 'pso', 'PSO384G4227' => 'pso', 'PSO478G1425' => 'pso', 'PSO541G3863' => 'pso', 'PSO675G0507' => 'pso', 'PSO782G0338' => 'pso', 'PSO832G0644' => 'pso', 'QL01p013664' => 'qlo', 'QL01p036598' => 'qlo', 'QL05p072984' => 'qlo', 'QL08p005768' => 'qlo', 'QL08p032743' => 'qlo', 'QL93p0073_0439' => 'qlo', 'QL93p0073_0444' => 'qlo', 'RcHm_v2.0_Chr5g0002851' => 'rch', 'RcHm_v2.0_Chr5g0055201' => 'rch', 'RcHm_v2.0_Chr5g0061191' => 'rch', 'RcHm_v2.0_Chr7g0203231' => 'rch', 'Rhsim01G0208100' => 'rsi', 'Rhsim01G0208200' => 'rsi', 'Rhsim02G0106500' => 'rsi', 'Rhsim03G0107900' => 'rsi', 'Rhsim06G0163400' => 'rsi', 'Rhsim13G0105200' => 'rsi', 'Sabra04G0006300' => 'sbr', 'Sabra04G0127000' => 'sbr', 'Sabra08G0148700' => 'sbr', 'Sabra09G0117400' => 'sbr', 'SalBow1G3326' => 'sbo', 'SalBow3G3228' => 'sbo', 'SalBow6G1634' => 'sbo', 'SalBow6G3603' => 'sbo', 'SalBow6G5266' => 'sbo', 'SalBow7G2265' => 'sbo', 'SalBow8G0850' => 'sbo', 'SalBow8G2592' => 'sbo', 'Sc05g0009240' => 'sci', 'Sc12g0002300' => 'sci', 'Sc21g0000100' => 'sci', 'Sc21g0004720' => 'sci', 'Sed0002949' => 'sed', 'Sed0004114' => 'sed', 'Sed0004306' => 'sed', 'Sed0006172' => 'sed', 'Sed0008413' => 'sed', 'Sed0013809' => 'sed', 'Sed0019556' => 'sed', 'SEGI_03570' => 'sgi', 'SEGI_07859' => 'sgi', 'SEGI_15042' => 'sgi', 'SEGI_16263' => 'sgi', 'SEGI_16552' => 'sgi', 'SEGI_24331' => 'sgi', 'SEGI_27316' => 'sgi', 'SEGI_29521' => 'sgi', 'SEGI_41342' => 'sgi', 'SGA_v2.0_scaffold27G11617' => 'sas', 'SGA_v2.0_scaffold316G48428' => 'sas', 'SGA_v2.0_scaffold49G18261' => 'sas', 'SGA_v2.0_scaffold7G03831' => 'sas', 'SGA_v2.0_scaffold93G28359' => 'sas', 'SHI02210' => 'shi', 'SHI06028' => 'shi', 'SHI06321' => 'shi', 'SMO111G0012' => 'smo', 'SMO228G0080' => 'smo', 'SMO356G0756' => 'smo', 'Solyc02g080620.3' => 'sly', 'Solyc06g074530.1' => 'sly', 'Solyc11g066890.1' => 'sly', 'Solyc11g072520.3' => 'sly', 'Sopen02g025330' => 'spe', 'Sopen06g031000' => 'spe', 'Sopen09g008240' => 'spe', 'Sopen09g025210' => 'spe', 'Sopen11g026600' => 'spe', 'Sopen11g030170' => 'spe', 'Sp1g10420' => 'spa', 'Sp3g06570' => 'spa', 'Sp4g10660' => 'spa', 'Sp5g16460' => 'spa', 'Sp6g22710' => 'spa', 'TAR365G0112' => 'tar', 'TAR369G0717' => 'tar', 'TAR374G0976' => 'tar', 'TAR623G1128' => 'tar', 'TAR626G1937' => 'tar', 'TAR627G0123' => 'tar', 'TAR628G0305' => 'tar', 'TAR636G1176' => 'tar', 'TAR636G2442' => 'tar', 'THA.LOC104800556' => 'tha', 'THA.LOC104809501' => 'tha', 'THA.LOC104815126' => 'tha', 'THA.LOC104815732' => 'tha', 'THA.LOC104823528' => 'tha', 'Thecc.02G365600' => 'tca', 'Thecc.06G222300' => 'tca', 'Thecc.09G261800' => 'tca', 'Thecc.09G291400' => 'tca', 'Thhalv10003028m.g' => 'esa', 'Thhalv10007886m.g' => 'esa', 'Thhalv10016085m.g' => 'esa', 'Thhalv10016681m.g' => 'esa', 'Thhalv10020951m.g' => 'esa', 'TPR.G15598' => 'tpr', 'TPR.G29305' => 'tpr', 'TPR.G32395' => 'tpr', 'TPR.G36998' => 'tpr', 'TPR.G4227' => 'tpr', 'TWI18G1433' => 'twi', 'TWI31G0755' => 'twi', 'TWI38G0912' => 'twi', 'TWI75G1097' => 'twi', 'TWI75G1619' => 'twi', 'TWI79G1336' => 'twi', 'unitig_0.g943' => 'ugi', 'unitig_0.g944' => 'ugi', 'unitig_22.g6646' => 'ugi', 'unitig_37.g12681' => 'ugi', 'unitig_8.g3290' => 'ugi', 'vmacro03278' => 'vma', 'vmacro12197' => 'vma', 'vmacro14478' => 'vma', 'vmacro15787' => 'vma', 'vmacro15789' => 'vma', 'vmacro15790' => 'vma', 'vmacro15806' => 'vma', 'vmacro22907' => 'vma', 'vmacro22908' => 'vma', 'vmacro22909' => 'vma', 'vmacro23108' => 'vma', 'VMungo0540G0540' => 'vmu', 'VMungo0540G2468' => 'vmu', 'VMungo1080G0390' => 'vmu', 'VMungo1080G1165' => 'vmu', 'VMungo1127G0170' => 'vmu', 'VMungo1127G2099' => 'vmu', 'VMungo1215G3013' => 'vmu', 'Zm00001eb013110' => 'zma', 'Zm00001eb084260' => 'zma', 'Zm00001eb096110' => 'zma', 'Zm00001eb217510' => 'zma', 'Zm00001eb322550' => 'zma', 'Zm00001eb390770' => 'zma', 'Zm00001eb397170' => 'zma', 'Zm00001eb404610' => 'zma', 'Zm00001eb421790' => 'zma' ) $gf_id = 'HOM05D000911' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000911' ) $data_identifier = 'HOM05D000911' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 16, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 5, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 6, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 8, 'nnu' => (int) 16, 'oeu' => (int) 8, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 5, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 16, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421790' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000911', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27780' => 'bna', 'A03p35380' => 'bna', 'A04p21160' => 'bna', 'A05p40570' => 'bna', 'A06p26900' => 'bna', 'A08p33230' => 'bna', 'A09p65960' => 'bna', 'A10p18290' => 'bna', 'Aa31LG1G12990' => 'aar', 'Aa31LG1G2980' => 'aar', 'Aa31LG4G14320' => 'aar', 'Aa31LG7G11800' => 'aar', 'Aa31sc36G50' => 'aar', 'Aa31sc36G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3721' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5459' => 'aag', 'Actinidia03028' => 'ach', 'Actinidia03753' => 'ach', 'Actinidia04187' => 'ach', 'Actinidia05509' => 'ach', 'Actinidia24180' => 'ach', 'Actinidia26906' => 'ach', 'Actinidia37097' => 'ach', 'Actinidia38249' => 'ach', 'Ah.01g003470' => 'amhyb', 'Ah.01g004580' => 'amhyb', 'Ah.01g014850' => 'amhyb', 'Ah.01g016830' => 'amhyb', 'Ah.14g088000' => 'amhyb', 'AL1G22980' => 'aly', 'AL3G18990' => 'aly', 'AL4G22440' => 'aly', 'AL4G33180' => 'aly', 'AL5G22920' => 'aly', 'AL6G33660' => 'aly', 'AL8G20720' => 'aly', 'Aqoxy1G00935' => 'aox', 'Aqoxy1G02094' => 'aox', 'Aqoxy2G01239' => 'aox', 'Aqoxy4G01870' => 'aox', 'Aqoxy7G00450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.36ZVTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71EM27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5D6C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH3WRE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3NCM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RIM768' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YB5YRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z36GDV' => 'arhy', 'AT1G08250' => 'ath', 'AT1G11790' => 'ath', 'AT2G27820' => 'ath', 'AT3G07630' => 'ath', 'AT3G44720' => 'ath', 'AT5G22630' => 'ath', 'ATR0693G304' => 'atr', 'ATR0794G109' => 'atr', 'ATR0820G120' => 'atr', 'ATR1159G064' => 'atr', 'Atru.chr10.2239' => 'acertr', 'Atru.chr3.3371' => 'acertr', 'Atru.chr6.3202' => 'acertr', 'AUR62006499' => 'cqu', 'AUR62012718' => 'cqu', 'AUR62021938' => 'cqu', 'AUR62023932' => 'cqu', 'AUR62025034' => 'cqu', 'AUR62025035' => 'cqu', 'AUR62038307' => 'cqu', 'AUR62043466' => 'cqu', 'BcaB02g10748' => 'bca', 'BcaB03g13231' => 'bca', 'BcaB03g14689' => 'bca', 'BcaB05g22716' => 'bca', 'BcaB06g28172' => 'bca', 'BcaB08g36413' => 'bca', 'BcaC01g02186' => 'bca', 'BcaC01g04272' => 'bca', 'BcaC02g08080' => 'bca', 'BcaC02g08227' => 'bca', 'BcaC03g13901' => 'bca', 'BcaC04g19593' => 'bca', 'BcaC04g20874' => 'bca', 'BcaC05g29557' => 'bca', 'BcaC06g35505' => 'bca', 'BcaC07g41954' => 'bca', 'BcaC07g41955' => 'bca', 'BcaC07g41956' => 'bca', 'BcaC07g42519' => 'bca', 'BcaC07g42520' => 'bca', 'BcaC07g42523' => 'bca', 'BcaC07g42524' => 'bca', 'BcaC07g42525' => 'bca', 'BcaC08g47480' => 'bca', 'BcaC08g47481' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00530' => 'bna', 'BolC2t07178H' => 'bol', 'BolC3t16567H' => 'bol', 'BolC4t27234H' => 'bol', 'BolC5t29728H' => 'bol', 'BolC5t34622H' => 'bol', 'BolC6t40321H' => 'bol', 'BolC7t42028H' => 'bol', 'BolC8t49125H' => 'bol', 'BolC8t52538H' => 'bol', 'BolC8t52539H' => 'bol', 'BolC9t56681H' => 'bol', 'BolC9t58266H' => 'bol', 'BolSC21t60294H' => 'bol', 'BraA02t05670Z' => 'bra', 'BraA03t12716Z' => 'bra', 'BraA04t17685Z' => 'bra', 'BraA05t22788Z' => 'bra', 'BraA06t24032Z' => 'bra', 'BraA06t25625Z' => 'bra', 'BraA07t27930Z' => 'bra', 'BraA08t35242Z' => 'bra', 'BraA09t38609Z' => 'bra', 'BraA10t43905Z' => 'bra', 'C02p11060' => 'bna', 'C03p42990' => 'bna', 'C03p67310' => 'bna', 'C04p56990' => 'bna', 'C04p58660' => 'bna', 'C05p09890' => 'bna', 'C05p59680' => 'bna', 'C06p19830' => 'bna', 'C06p53040' => 'bna', 'C07p15230' => 'bna', 'C08p50070' => 'bna', 'C08p50090' => 'bna', 'C09p38330' => 'bna', 'C09p53940' => 'bna', 'CAN.G1014.1' => 'can', 'CAN.G644.30' => 'can', 'CAN.G84.47' => 'can', 'CAN.G919.8' => 'can', 'CANSAT54G0113' => 'cansat', 'CANSAT54G1286' => 'cansat', 'CANSAT64G1020' => 'cansat', 'CARHR008080' => 'chi', 'CARHR008090' => 'chi', 'CARHR012130' => 'chi', 'CARHR038390' => 'chi', 'CARHR082330' => 'chi', 'CARHR120520' => 'chi', 'CARHR151470' => 'chi', 'CARHR190950' => 'chi', 'Carub.0001s0760' => 'cru', 'Carub.0001s1146' => 'cru', 'Carub.0003s0721' => 'cru', 'Carub.0004s0858' => 'cru', 'Carub.0005s1040' => 'cru', 'Carub.0006s2035' => 'cru', 'Carub.0015s0005' => 'cru', 'Ca_01607_v3' => 'car', 'Ca_01677_v3' => 'car', 'Ca_06087_v3' => 'car', 'Ca_19238_v3' => 'car', 'Ca_19373_v3' => 'car', 'Ca_21079_v3' => 'car', 'CBR_g54016' => 'cbr', 'CBR_g54018' => 'cbr', 'CBR_g54020' => 'cbr', 'Cc01_g09780' => 'ccan', 'Cc01_g11680' => 'ccan', 'Cc02_g15610' => 'ccan', 'Cc05_g04350' => 'ccan', 'Cc09_g01580' => 'ccan', 'CDE01G0795' => 'cde', 'CDE02G2024' => 'cde', 'CDE02G2260' => 'cde', 'CDE02G4561' => 'cde', 'CDE05G2733' => 'cde', 'CDE05G3422' => 'cde', 'CDE06G2003' => 'cde', 'CDE08G0576' => 'cde', 'CDE09G0048' => 'cde', 'CDE11G0805' => 'cde', 'Cfa003644' => 'cfa', 'Cfa006290' => 'cfa', 'Cfa010080' => 'cfa', 'Cfa011376' => 'cfa', 'Cfa011576' => 'cfa', 'Cfa011577' => 'cfa', 'Cfa014389' => 'cfa', 'Ciclev10006044m.g' => 'ccl', 'Ciclev10006954m.g' => 'ccl', 'Ciclev10015131m.g' => 'ccl', 'Ciclev10015580m.g' => 'ccl', 'Ciclev10028359m.g' => 'ccl', 'Ciclev10028573m.g' => 'ccl', 'CiPaw.03G159300' => 'cil', 'CiPaw.04G115100' => 'cil', 'CiPaw.09G092800' => 'cil', 'CiPaw.10G071800' => 'cil', 'CiPaw.13G105800' => 'cil', 'CiPaw.13G141000' => 'cil', 'CiPaw.14G103400' => 'cil', 'ClCG01G012700' => 'cla', 'ClCG01G012720' => 'cla', 'ClCG01G021920' => 'cla', 'ClCG02G008870' => 'cla', 'ClCG02G020840' => 'cla', 'ClCG02G021930' => 'cla', 'COL.COLO4_19302' => 'col', 'COL.COLO4_25262' => 'col', 'COL.COLO4_31788' => 'col', 'Cpa.g.c34684' => 'cpa', 'Cpa.g.c36520.1' => 'cpa', 'Cpa.g.c45626' => 'cpa', 'Cpa.g.sc121.17' => 'cpa', 'Cpa.g.sc13.22' => 'cpa', 'Cpa.g.sc87.88' => 'cpa', 'Cre06.g261800' => 'cre', 'CsaV3_1G014500' => 'csa', 'CsaV3_1G014510' => 'csa', 'CsaV3_2G034880' => 'csa', 'CsaV3_6G014760' => 'csa', 'CsaV3_6G021500' => 'csa', 'CsaV3_6G048980' => 'csa', 'CSS0002511' => 'camsi', 'CSS0007556' => 'camsi', 'CSS0008532' => 'camsi', 'CSS0009709' => 'camsi', 'CSS0010486' => 'camsi', 'CSS0016768' => 'camsi', 'CSS0023512' => 'camsi', 'CSS0025341' => 'camsi', 'CSS0027999' => 'camsi', 'CSS0028944' => 'camsi', 'CSS0032292' => 'camsi', 'CSS0032464' => 'camsi', 'CSS0037153' => 'camsi', 'CSS0039256' => 'camsi', 'CSS0048392' => 'camsi', 'CSS0050458' => 'camsi', 'DCAR_004224' => 'dca', 'DCAR_006147' => 'dca', 'DCAR_006465' => 'dca', 'DCAR_008159' => 'dca', 'DCAR_012164' => 'dca', 'DCAR_019764' => 'dca', 'Dinv05418' => 'din', 'Dinv10839' => 'din', 'Dinv12521' => 'din', 'Dinv13900' => 'din', 'Dinv29426' => 'din', 'Duzib150G0263' => 'dzi', 'Duzib168G1178' => 'dzi', 'Duzib168G1924' => 'dzi', 'Duzib170G0299' => 'dzi', 'Duzib170G0813' => 'dzi', 'Duzib235G1128' => 'dzi', 'Duzib248G1060' => 'dzi', 'ECA232G1910' => 'eca', 'ECA233G4621' => 'eca', 'ECA238G1216' => 'eca', 'ECA238G1784' => 'eca', 'ECA248G1242' => 'eca', 'EL10Ac8g20071' => 'bvu', 'EL10Ac9g21086' => 'bvu', 'EL10Ac9g22407' => 'bvu', 'EL10Ac9g22412' => 'bvu', 'Eucgr.A01119' => 'egr', 'Eucgr.E04043' => 'egr', 'Eucgr.J00428' => 'egr', 'Eucgr.J00958' => 'egr', 'FAN11G3091' => 'fan', 'FAN11G3651' => 'fan', 'FAN16G2566' => 'fan', 'FAN21G3155' => 'fan', 'FAN21G3400' => 'fan', 'FAN21G3543' => 'fan', 'FAN25G0234' => 'fan', 'FAN25G1422' => 'fan', 'FAN25G3392' => 'fan', 'FvH4_3g01940' => 'fve', 'FvH4_3g29870' => 'fve', 'FvH4_3g33680' => 'fve', 'Glyma.09G004200' => 'gma', 'Glyma.11G151288' => 'gma', 'Glyma.11G189100' => 'gma', 'Glyma.12G072500' => 'gma', 'Glyma.12G085500' => 'gma', 'Glyma.12G181800' => 'gma', 'Glyma.12G193000' => 'gma', 'Glyma.13G309300' => 'gma', 'Glyma.13G319000' => 'gma', 'Glyma.17G012600' => 'gma', 'Gohir.A06G148600' => 'ghi', 'Gohir.A07G115800' => 'ghi', 'Gohir.A08G003600' => 'ghi', 'Gohir.A09G093300' => 'ghi', 'Gohir.A09G105400' => 'ghi', 'Gohir.A09G105500' => 'ghi', 'Gohir.D06G154600' => 'ghi', 'Gohir.D07G120200' => 'ghi', 'Gohir.D08G013900' => 'ghi', 'Gohir.D09G093100' => 'ghi', 'Gohir.D09G102200' => 'ghi', 'Gohir.D09G102300' => 'ghi', 'Gorai.001G129400' => 'gra', 'Gorai.004G008200' => 'gra', 'Gorai.006G109800' => 'gra', 'Gorai.006G119500' => 'gra', 'Gorai.006G121300' => 'gra', 'Gorai.010G180700' => 'gra', 'GSVIVG01012716001' => 'vvi', 'GSVIVG01025118001' => 'vvi', 'GSVIVG01030439001' => 'vvi', 'GSVIVG01031397001' => 'vvi', 'HanXRQChr01g0004201' => 'han', 'HanXRQChr02g0054941' => 'han', 'HanXRQChr05g0141811' => 'han', 'HanXRQChr07g0197751' => 'han', 'HanXRQChr11g0346691' => 'han', 'HanXRQChr13g0396971' => 'han', 'HanXRQChr14g0432951' => 'han', 'HanXRQChr14g0452001' => 'han', 'HanXRQChr15g0496681' => 'han', 'HanXRQChr17g0557491' => 'han', 'HanXRQChr17g0557501' => 'han', 'Haze_06809' => 'cav', 'Haze_12852' => 'cav', 'Haze_15850' => 'cav', 'Haze_23446' => 'cav', 'Haze_23942' => 'cav', 'Haze_23943' => 'cav', 'Hma1.2p1_0091F.1_g046450' => 'hma', 'Hma1.2p1_0128F.1_g059910' => 'hma', 'Hma1.2p1_0249F.1_g102260' => 'hma', 'Hma1.2p1_0453F.1_g156190' => 'hma', 'Hma1.2p1_0695F.1_g204380' => 'hma', 'Hma1.2p1_0749F.1_g212650' => 'hma', 'Hma1.2p1_2156F.1_g315420' => 'hma', 'Hma1.2p1_2686F.1_g326940' => 'hma', 'HPP92_006428' => 'vpl', 'HPP92_012069' => 'vpl', 'HPP92_014129' => 'vpl', 'HPP92_014133' => 'vpl', 'HPP92_017315' => 'vpl', 'HPP92_026445' => 'vpl', 'HPP92_026446' => 'vpl', 'Hund00774' => 'sun', 'Hund07682' => 'sun', 'Hund21413' => 'sun', 'Hund23462' => 'sun', 'Hund23463' => 'sun', 'Lalb_Chr03g0027911' => 'lal', 'Lalb_Chr13g0304271' => 'lal', 'Lalb_Chr19g0137471' => 'lal', 'Lalb_Chr22g0350651' => 'lal', 'Lalb_Chr24g0395151' => 'lal', 'Lj1A1231T40' => 'lonja', 'Lj1A221T48' => 'lonja', 'Lj1C924T12' => 'lonja', 'Lj2C993G6' => 'lonja', 'Lj3g0005790' => 'lja', 'Lj3g0015432' => 'lja', 'Lj3g0017722' => 'lja', 'Lj3g0018497' => 'lja', 'Lj4g0025071' => 'lja', 'Lsat_1_v5_gn_1_129680' => 'lsa', 'Lsat_1_v5_gn_2_25321' => 'lsa', 'Lsat_1_v5_gn_2_95461' => 'lsa', 'Lsat_1_v5_gn_4_159620' => 'lsa', 'Lsat_1_v5_gn_6_41301' => 'lsa', 'Lsat_1_v5_gn_6_74660' => 'lsa', 'Lsat_1_v5_gn_7_11520' => 'lsa', 'Lsat_1_v5_gn_9_67680' => 'lsa', 'Manes.04G008300' => 'mes', 'Manes.04G008400' => 'mes', 'Manes.04G026500' => 'mes', 'Manes.10G135300' => 'mes', 'Manes.11G157300' => 'mes', 'Manes.12G074000' => 'mes', 'Manes.16G006200' => 'mes', 'Manes.17G026400' => 'mes', 'Mapoly0024s0086' => 'mpo', 'Mapoly0024s0087' => 'mpo', 'Mapoly0071s0057' => 'mpo', 'Mapoly0204s0012' => 'mpo', 'MBI04_g37681_MAGBIO' => 'mbi', 'MBI05_g17779_MAGBIO' => 'mbi', 'MBI12_g31184_MAGBIO' => 'mbi', 'MBI17_g11083_MAGBIO' => 'mbi', 'MBI18_g03883_MAGBIO' => 'mbi', 'MBI18_g28940_MAGBIO' => 'mbi', 'MCO01G690' => 'mco', 'MD03G1109900' => 'mdo', 'MD03G1134800' => 'mdo', 'MD05G1348000' => 'mdo', 'MD10G1322400' => 'mdo', 'MD11G1123300' => 'mdo', 'MD11G1157600' => 'mdo', 'Medtr2g084875' => 'mtr', 'Medtr2g088130' => 'mtr', 'Medtr4g055310' => 'mtr', 'Medtr4g061070' => 'mtr', 'Medtr4g132250' => 'mtr', 'MELO3C004795.2' => 'cme', 'MELO3C004797.2' => 'cme', 'MELO3C007396.2' => 'cme', 'MELO3C019277.2' => 'cme', 'MELO3C021449.2' => 'cme', 'MELO3C025736.2' => 'cme', 'Migut.D02175' => 'egut', 'Migut.H01573' => 'egut', 'Migut.M01327' => 'egut', 'Migut.N02513' => 'egut', 'MSTRG.14638' => 'ama', 'MSTRG.18632' => 'ama', 'MSTRG.7203' => 'ama', 'Nitab4.5_0000533g0140' => 'nta', 'Nitab4.5_0000888g0150' => 'nta', 'Nitab4.5_0001453g0040' => 'nta', 'Nitab4.5_0002827g0090' => 'nta', 'Nitab4.5_0003082g0040' => 'nta', 'Nitab4.5_0007799g0040' => 'nta', 'Nitab4.5_0008983g0010' => 'nta', 'Nitab4.5_0009017g0020' => 'nta', 'Nn1g02132' => 'nnu', 'Nn1g03492' => 'nnu', 'Nn1g03493' => 'nnu', 'Nn1g03494' => 'nnu', 'Nn1g07164' => 'nnu', 'Nn1g07291' => 'nnu', 'Nn2g10655' => 'nnu', 'Nn2g11652' => 'nnu', 'Nn2g14008' => 'nnu', 'Nn3g17476' => 'nnu', 'Nn3g17477' => 'nnu', 'Nn4g22370' => 'nnu', 'Nn4g25255' => 'nnu', 'Nn5g27755' => 'nnu', 'Nn6g34260' => 'nnu', 'Nn6g35041' => 'nnu', 'Oeu005924.1' => 'oeu', 'Oeu008383.1' => 'oeu', 'Oeu014928.1' => 'oeu', 'Oeu019889.1' => 'oeu', 'Oeu022271.1' => 'oeu', 'Oeu025271.1' => 'oeu', 'Oeu036302.1' => 'oeu', 'Oeu044100.1' => 'oeu', 'Os01g0528300' => 'osa', 'Os03g0286200' => 'osa', 'Os04g0406600' => 'osa', 'Os07g0512000' => 'osa', 'Os07g0694600' => 'osa', 'Os08g0411000' => 'osa', 'Os09g0565700' => 'osa', 'Os09g0566050' => 'osa', 'Os10g0523700' => 'osa', 'Peaxi162Scf00002g00514' => 'pax', 'Peaxi162Scf00047g01817' => 'pax', 'Peaxi162Scf00114g00001' => 'pax', 'Peaxi162Scf00147g00613' => 'pax', 'Peaxi162Scf00389g00425' => 'pax', 'PGR042G1139' => 'pgr', 'PGR042G3273' => 'pgr', 'PGR102G2180' => 'pgr', 'PGR119G0234' => 'pgr', 'PGR119G0668' => 'pgr', 'PGSC0003DMG400007122' => 'stu', 'PGSC0003DMG400016478' => 'stu', 'PGSC0003DMG400025374' => 'stu', 'PGSC0003DMG400026536' => 'stu', 'Phvul.003G079600' => 'pvu', 'Phvul.005G115600' => 'pvu', 'Phvul.005G127100' => 'pvu', 'Phvul.006G149500' => 'pvu', 'Phvul.006G149600' => 'pvu', 'Phvul.011G071800' => 'pvu', 'Phvul.011G090400' => 'pvu', 'Potri.004G013400' => 'ptr', 'Potri.004G188100' => 'ptr', 'Potri.008G195500' => 'ptr', 'Potri.009G148800' => 'ptr', 'Potri.011G004700' => 'ptr', 'Pp3c17_22810' => 'ppa', 'Pp3c18_4480' => 'ppa', 'Pp3c19_13030' => 'ppa', 'Pp3c1_33620' => 'ppa', 'Pp3c2_9380' => 'ppa', 'PRCOL_00001023' => 'pco', 'Prupe.3G216300' => 'ppe', 'Prupe.4G019500' => 'ppe', 'Prupe.6G092500' => 'ppe', 'Prupe.6G119200' => 'ppe', 'Psat0s1945g0080' => 'psa', 'Psat0s4167g0040' => 'psa', 'Psat1g185800' => 'psa', 'Psat4g006440' => 'psa', 'Psat4g006480' => 'psa', 'Psat4g168120' => 'psa', 'Psat5g255680' => 'psa', 'Psat5g261760' => 'psa', 'Psat7g222120' => 'psa', 'PSO063G7252' => 'pso', 'PSO170G4778' => 'pso', 'PSO210G2249' => 'pso', 'PSO339G2411' => 'pso', 'PSO339G2457' => 'pso', 'PSO339G2854' => 'pso', 'PSO339G4288' => 'pso', 'PSO339G4615' => 'pso', 'PSO384G2796' => 'pso', 'PSO384G2940' => 'pso', 'PSO384G4227' => 'pso', 'PSO478G1425' => 'pso', 'PSO541G3863' => 'pso', 'PSO675G0507' => 'pso', 'PSO782G0338' => 'pso', 'PSO832G0644' => 'pso', 'QL01p013664' => 'qlo', 'QL01p036598' => 'qlo', 'QL05p072984' => 'qlo', 'QL08p005768' => 'qlo', 'QL08p032743' => 'qlo', 'QL93p0073_0439' => 'qlo', 'QL93p0073_0444' => 'qlo', 'RcHm_v2.0_Chr5g0002851' => 'rch', 'RcHm_v2.0_Chr5g0055201' => 'rch', 'RcHm_v2.0_Chr5g0061191' => 'rch', 'RcHm_v2.0_Chr7g0203231' => 'rch', 'Rhsim01G0208100' => 'rsi', 'Rhsim01G0208200' => 'rsi', 'Rhsim02G0106500' => 'rsi', 'Rhsim03G0107900' => 'rsi', 'Rhsim06G0163400' => 'rsi', 'Rhsim13G0105200' => 'rsi', 'Sabra04G0006300' => 'sbr', 'Sabra04G0127000' => 'sbr', 'Sabra08G0148700' => 'sbr', 'Sabra09G0117400' => 'sbr', 'SalBow1G3326' => 'sbo', 'SalBow3G3228' => 'sbo', 'SalBow6G1634' => 'sbo', 'SalBow6G3603' => 'sbo', 'SalBow6G5266' => 'sbo', 'SalBow7G2265' => 'sbo', 'SalBow8G0850' => 'sbo', 'SalBow8G2592' => 'sbo', 'Sc05g0009240' => 'sci', 'Sc12g0002300' => 'sci', 'Sc21g0000100' => 'sci', 'Sc21g0004720' => 'sci', 'Sed0002949' => 'sed', 'Sed0004114' => 'sed', 'Sed0004306' => 'sed', 'Sed0006172' => 'sed', 'Sed0008413' => 'sed', 'Sed0013809' => 'sed', 'Sed0019556' => 'sed', 'SEGI_03570' => 'sgi', 'SEGI_07859' => 'sgi', 'SEGI_15042' => 'sgi', 'SEGI_16263' => 'sgi', 'SEGI_16552' => 'sgi', 'SEGI_24331' => 'sgi', 'SEGI_27316' => 'sgi', 'SEGI_29521' => 'sgi', 'SEGI_41342' => 'sgi', 'SGA_v2.0_scaffold27G11617' => 'sas', 'SGA_v2.0_scaffold316G48428' => 'sas', 'SGA_v2.0_scaffold49G18261' => 'sas', 'SGA_v2.0_scaffold7G03831' => 'sas', 'SGA_v2.0_scaffold93G28359' => 'sas', 'SHI02210' => 'shi', 'SHI06028' => 'shi', 'SHI06321' => 'shi', 'SMO111G0012' => 'smo', 'SMO228G0080' => 'smo', 'SMO356G0756' => 'smo', 'Solyc02g080620.3' => 'sly', 'Solyc06g074530.1' => 'sly', 'Solyc11g066890.1' => 'sly', 'Solyc11g072520.3' => 'sly', 'Sopen02g025330' => 'spe', 'Sopen06g031000' => 'spe', 'Sopen09g008240' => 'spe', 'Sopen09g025210' => 'spe', 'Sopen11g026600' => 'spe', 'Sopen11g030170' => 'spe', 'Sp1g10420' => 'spa', 'Sp3g06570' => 'spa', 'Sp4g10660' => 'spa', 'Sp5g16460' => 'spa', 'Sp6g22710' => 'spa', 'TAR365G0112' => 'tar', 'TAR369G0717' => 'tar', 'TAR374G0976' => 'tar', 'TAR623G1128' => 'tar', 'TAR626G1937' => 'tar', 'TAR627G0123' => 'tar', 'TAR628G0305' => 'tar', 'TAR636G1176' => 'tar', 'TAR636G2442' => 'tar', 'THA.LOC104800556' => 'tha', 'THA.LOC104809501' => 'tha', 'THA.LOC104815126' => 'tha', 'THA.LOC104815732' => 'tha', 'THA.LOC104823528' => 'tha', 'Thecc.02G365600' => 'tca', 'Thecc.06G222300' => 'tca', 'Thecc.09G261800' => 'tca', 'Thecc.09G291400' => 'tca', 'Thhalv10003028m.g' => 'esa', 'Thhalv10007886m.g' => 'esa', 'Thhalv10016085m.g' => 'esa', 'Thhalv10016681m.g' => 'esa', 'Thhalv10020951m.g' => 'esa', 'TPR.G15598' => 'tpr', 'TPR.G29305' => 'tpr', 'TPR.G32395' => 'tpr', 'TPR.G36998' => 'tpr', 'TPR.G4227' => 'tpr', 'TWI18G1433' => 'twi', 'TWI31G0755' => 'twi', 'TWI38G0912' => 'twi', 'TWI75G1097' => 'twi', 'TWI75G1619' => 'twi', 'TWI79G1336' => 'twi', 'unitig_0.g943' => 'ugi', 'unitig_0.g944' => 'ugi', 'unitig_22.g6646' => 'ugi', 'unitig_37.g12681' => 'ugi', 'unitig_8.g3290' => 'ugi', 'vmacro03278' => 'vma', 'vmacro12197' => 'vma', 'vmacro14478' => 'vma', 'vmacro15787' => 'vma', 'vmacro15789' => 'vma', 'vmacro15790' => 'vma', 'vmacro15806' => 'vma', 'vmacro22907' => 'vma', 'vmacro22908' => 'vma', 'vmacro22909' => 'vma', 'vmacro23108' => 'vma', 'VMungo0540G0540' => 'vmu', 'VMungo0540G2468' => 'vmu', 'VMungo1080G0390' => 'vmu', 'VMungo1080G1165' => 'vmu', 'VMungo1127G0170' => 'vmu', 'VMungo1127G2099' => 'vmu', 'VMungo1215G3013' => 'vmu', 'Zm00001eb013110' => 'zma', 'Zm00001eb084260' => 'zma', 'Zm00001eb096110' => 'zma', 'Zm00001eb217510' => 'zma', 'Zm00001eb322550' => 'zma', 'Zm00001eb390770' => 'zma', 'Zm00001eb397170' => 'zma', 'Zm00001eb404610' => 'zma', 'Zm00001eb421790' => 'zma' ), 'gf_id' => 'HOM05D000911', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000911' ), 'data_identifier' => 'HOM05D000911', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000911', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27780' => 'bna', 'A03p35380' => 'bna', 'A04p21160' => 'bna', 'A05p40570' => 'bna', 'A06p26900' => 'bna', 'A08p33230' => 'bna', 'A09p65960' => 'bna', 'A10p18290' => 'bna', 'Aa31LG1G12990' => 'aar', 'Aa31LG1G2980' => 'aar', 'Aa31LG4G14320' => 'aar', 'Aa31LG7G11800' => 'aar', 'Aa31sc36G50' => 'aar', 'Aa31sc36G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3721' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5459' => 'aag', 'Actinidia03028' => 'ach', 'Actinidia03753' => 'ach', 'Actinidia04187' => 'ach', 'Actinidia05509' => 'ach', 'Actinidia24180' => 'ach', 'Actinidia26906' => 'ach', 'Actinidia37097' => 'ach', 'Actinidia38249' => 'ach', 'Ah.01g003470' => 'amhyb', 'Ah.01g004580' => 'amhyb', 'Ah.01g014850' => 'amhyb', 'Ah.01g016830' => 'amhyb', 'Ah.14g088000' => 'amhyb', 'AL1G22980' => 'aly', 'AL3G18990' => 'aly', 'AL4G22440' => 'aly', 'AL4G33180' => 'aly', 'AL5G22920' => 'aly', 'AL6G33660' => 'aly', 'AL8G20720' => 'aly', 'Aqoxy1G00935' => 'aox', 'Aqoxy1G02094' => 'aox', 'Aqoxy2G01239' => 'aox', 'Aqoxy4G01870' => 'aox', 'Aqoxy7G00450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.36ZVTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71EM27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5D6C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH3WRE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3NCM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RIM768' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YB5YRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z36GDV' => 'arhy', 'AT1G08250' => 'ath', 'AT1G11790' => 'ath', 'AT2G27820' => 'ath', 'AT3G07630' => 'ath', 'AT3G44720' => 'ath', 'AT5G22630' => 'ath', 'ATR0693G304' => 'atr', 'ATR0794G109' => 'atr', 'ATR0820G120' => 'atr', 'ATR1159G064' => 'atr', 'Atru.chr10.2239' => 'acertr', 'Atru.chr3.3371' => 'acertr', 'Atru.chr6.3202' => 'acertr', 'AUR62006499' => 'cqu', 'AUR62012718' => 'cqu', 'AUR62021938' => 'cqu', 'AUR62023932' => 'cqu', 'AUR62025034' => 'cqu', 'AUR62025035' => 'cqu', 'AUR62038307' => 'cqu', 'AUR62043466' => 'cqu', 'BcaB02g10748' => 'bca', 'BcaB03g13231' => 'bca', 'BcaB03g14689' => 'bca', 'BcaB05g22716' => 'bca', 'BcaB06g28172' => 'bca', 'BcaB08g36413' => 'bca', 'BcaC01g02186' => 'bca', 'BcaC01g04272' => 'bca', 'BcaC02g08080' => 'bca', 'BcaC02g08227' => 'bca', 'BcaC03g13901' => 'bca', 'BcaC04g19593' => 'bca', 'BcaC04g20874' => 'bca', 'BcaC05g29557' => 'bca', 'BcaC06g35505' => 'bca', 'BcaC07g41954' => 'bca', 'BcaC07g41955' => 'bca', 'BcaC07g41956' => 'bca', 'BcaC07g42519' => 'bca', 'BcaC07g42520' => 'bca', 'BcaC07g42523' => 'bca', 'BcaC07g42524' => 'bca', 'BcaC07g42525' => 'bca', 'BcaC08g47480' => 'bca', 'BcaC08g47481' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00530' => 'bna', 'BolC2t07178H' => 'bol', 'BolC3t16567H' => 'bol', 'BolC4t27234H' => 'bol', 'BolC5t29728H' => 'bol', 'BolC5t34622H' => 'bol', 'BolC6t40321H' => 'bol', 'BolC7t42028H' => 'bol', 'BolC8t49125H' => 'bol', 'BolC8t52538H' => 'bol', 'BolC8t52539H' => 'bol', 'BolC9t56681H' => 'bol', 'BolC9t58266H' => 'bol', 'BolSC21t60294H' => 'bol', 'BraA02t05670Z' => 'bra', 'BraA03t12716Z' => 'bra', 'BraA04t17685Z' => 'bra', 'BraA05t22788Z' => 'bra', 'BraA06t24032Z' => 'bra', 'BraA06t25625Z' => 'bra', 'BraA07t27930Z' => 'bra', 'BraA08t35242Z' => 'bra', 'BraA09t38609Z' => 'bra', 'BraA10t43905Z' => 'bra', 'C02p11060' => 'bna', 'C03p42990' => 'bna', 'C03p67310' => 'bna', 'C04p56990' => 'bna', 'C04p58660' => 'bna', 'C05p09890' => 'bna', 'C05p59680' => 'bna', 'C06p19830' => 'bna', 'C06p53040' => 'bna', 'C07p15230' => 'bna', 'C08p50070' => 'bna', 'C08p50090' => 'bna', 'C09p38330' => 'bna', 'C09p53940' => 'bna', 'CAN.G1014.1' => 'can', 'CAN.G644.30' => 'can', 'CAN.G84.47' => 'can', 'CAN.G919.8' => 'can', 'CANSAT54G0113' => 'cansat', 'CANSAT54G1286' => 'cansat', 'CANSAT64G1020' => 'cansat', 'CARHR008080' => 'chi', 'CARHR008090' => 'chi', 'CARHR012130' => 'chi', 'CARHR038390' => 'chi', 'CARHR082330' => 'chi', 'CARHR120520' => 'chi', 'CARHR151470' => 'chi', 'CARHR190950' => 'chi', 'Carub.0001s0760' => 'cru', 'Carub.0001s1146' => 'cru', 'Carub.0003s0721' => 'cru', 'Carub.0004s0858' => 'cru', 'Carub.0005s1040' => 'cru', 'Carub.0006s2035' => 'cru', 'Carub.0015s0005' => 'cru', 'Ca_01607_v3' => 'car', 'Ca_01677_v3' => 'car', 'Ca_06087_v3' => 'car', 'Ca_19238_v3' => 'car', 'Ca_19373_v3' => 'car', 'Ca_21079_v3' => 'car', 'CBR_g54016' => 'cbr', 'CBR_g54018' => 'cbr', 'CBR_g54020' => 'cbr', 'Cc01_g09780' => 'ccan', 'Cc01_g11680' => 'ccan', 'Cc02_g15610' => 'ccan', 'Cc05_g04350' => 'ccan', 'Cc09_g01580' => 'ccan', 'CDE01G0795' => 'cde', 'CDE02G2024' => 'cde', 'CDE02G2260' => 'cde', 'CDE02G4561' => 'cde', 'CDE05G2733' => 'cde', 'CDE05G3422' => 'cde', 'CDE06G2003' => 'cde', 'CDE08G0576' => 'cde', 'CDE09G0048' => 'cde', 'CDE11G0805' => 'cde', 'Cfa003644' => 'cfa', 'Cfa006290' => 'cfa', 'Cfa010080' => 'cfa', 'Cfa011376' => 'cfa', 'Cfa011576' => 'cfa', 'Cfa011577' => 'cfa', 'Cfa014389' => 'cfa', 'Ciclev10006044m.g' => 'ccl', 'Ciclev10006954m.g' => 'ccl', 'Ciclev10015131m.g' => 'ccl', 'Ciclev10015580m.g' => 'ccl', 'Ciclev10028359m.g' => 'ccl', 'Ciclev10028573m.g' => 'ccl', 'CiPaw.03G159300' => 'cil', 'CiPaw.04G115100' => 'cil', 'CiPaw.09G092800' => 'cil', 'CiPaw.10G071800' => 'cil', 'CiPaw.13G105800' => 'cil', 'CiPaw.13G141000' => 'cil', 'CiPaw.14G103400' => 'cil', 'ClCG01G012700' => 'cla', 'ClCG01G012720' => 'cla', 'ClCG01G021920' => 'cla', 'ClCG02G008870' => 'cla', 'ClCG02G020840' => 'cla', 'ClCG02G021930' => 'cla', 'COL.COLO4_19302' => 'col', 'COL.COLO4_25262' => 'col', 'COL.COLO4_31788' => 'col', 'Cpa.g.c34684' => 'cpa', 'Cpa.g.c36520.1' => 'cpa', 'Cpa.g.c45626' => 'cpa', 'Cpa.g.sc121.17' => 'cpa', 'Cpa.g.sc13.22' => 'cpa', 'Cpa.g.sc87.88' => 'cpa', 'Cre06.g261800' => 'cre', 'CsaV3_1G014500' => 'csa', 'CsaV3_1G014510' => 'csa', 'CsaV3_2G034880' => 'csa', 'CsaV3_6G014760' => 'csa', 'CsaV3_6G021500' => 'csa', 'CsaV3_6G048980' => 'csa', 'CSS0002511' => 'camsi', 'CSS0007556' => 'camsi', 'CSS0008532' => 'camsi', 'CSS0009709' => 'camsi', 'CSS0010486' => 'camsi', 'CSS0016768' => 'camsi', 'CSS0023512' => 'camsi', 'CSS0025341' => 'camsi', 'CSS0027999' => 'camsi', 'CSS0028944' => 'camsi', 'CSS0032292' => 'camsi', 'CSS0032464' => 'camsi', 'CSS0037153' => 'camsi', 'CSS0039256' => 'camsi', 'CSS0048392' => 'camsi', 'CSS0050458' => 'camsi', 'DCAR_004224' => 'dca', 'DCAR_006147' => 'dca', 'DCAR_006465' => 'dca', 'DCAR_008159' => 'dca', 'DCAR_012164' => 'dca', 'DCAR_019764' => 'dca', 'Dinv05418' => 'din', 'Dinv10839' => 'din', 'Dinv12521' => 'din', 'Dinv13900' => 'din', 'Dinv29426' => 'din', 'Duzib150G0263' => 'dzi', 'Duzib168G1178' => 'dzi', 'Duzib168G1924' => 'dzi', 'Duzib170G0299' => 'dzi', 'Duzib170G0813' => 'dzi', 'Duzib235G1128' => 'dzi', 'Duzib248G1060' => 'dzi', 'ECA232G1910' => 'eca', 'ECA233G4621' => 'eca', 'ECA238G1216' => 'eca', 'ECA238G1784' => 'eca', 'ECA248G1242' => 'eca', 'EL10Ac8g20071' => 'bvu', 'EL10Ac9g21086' => 'bvu', 'EL10Ac9g22407' => 'bvu', 'EL10Ac9g22412' => 'bvu', 'Eucgr.A01119' => 'egr', 'Eucgr.E04043' => 'egr', 'Eucgr.J00428' => 'egr', 'Eucgr.J00958' => 'egr', 'FAN11G3091' => 'fan', 'FAN11G3651' => 'fan', 'FAN16G2566' => 'fan', 'FAN21G3155' => 'fan', 'FAN21G3400' => 'fan', 'FAN21G3543' => 'fan', 'FAN25G0234' => 'fan', 'FAN25G1422' => 'fan', 'FAN25G3392' => 'fan', 'FvH4_3g01940' => 'fve', 'FvH4_3g29870' => 'fve', 'FvH4_3g33680' => 'fve', 'Glyma.09G004200' => 'gma', 'Glyma.11G151288' => 'gma', 'Glyma.11G189100' => 'gma', 'Glyma.12G072500' => 'gma', 'Glyma.12G085500' => 'gma', 'Glyma.12G181800' => 'gma', 'Glyma.12G193000' => 'gma', 'Glyma.13G309300' => 'gma', 'Glyma.13G319000' => 'gma', 'Glyma.17G012600' => 'gma', 'Gohir.A06G148600' => 'ghi', 'Gohir.A07G115800' => 'ghi', 'Gohir.A08G003600' => 'ghi', 'Gohir.A09G093300' => 'ghi', 'Gohir.A09G105400' => 'ghi', 'Gohir.A09G105500' => 'ghi', 'Gohir.D06G154600' => 'ghi', 'Gohir.D07G120200' => 'ghi', 'Gohir.D08G013900' => 'ghi', 'Gohir.D09G093100' => 'ghi', 'Gohir.D09G102200' => 'ghi', 'Gohir.D09G102300' => 'ghi', 'Gorai.001G129400' => 'gra', 'Gorai.004G008200' => 'gra', 'Gorai.006G109800' => 'gra', 'Gorai.006G119500' => 'gra', 'Gorai.006G121300' => 'gra', 'Gorai.010G180700' => 'gra', 'GSVIVG01012716001' => 'vvi', 'GSVIVG01025118001' => 'vvi', 'GSVIVG01030439001' => 'vvi', 'GSVIVG01031397001' => 'vvi', 'HanXRQChr01g0004201' => 'han', 'HanXRQChr02g0054941' => 'han', 'HanXRQChr05g0141811' => 'han', 'HanXRQChr07g0197751' => 'han', 'HanXRQChr11g0346691' => 'han', 'HanXRQChr13g0396971' => 'han', 'HanXRQChr14g0432951' => 'han', 'HanXRQChr14g0452001' => 'han', 'HanXRQChr15g0496681' => 'han', 'HanXRQChr17g0557491' => 'han', 'HanXRQChr17g0557501' => 'han', 'Haze_06809' => 'cav', 'Haze_12852' => 'cav', 'Haze_15850' => 'cav', 'Haze_23446' => 'cav', 'Haze_23942' => 'cav', 'Haze_23943' => 'cav', 'Hma1.2p1_0091F.1_g046450' => 'hma', 'Hma1.2p1_0128F.1_g059910' => 'hma', 'Hma1.2p1_0249F.1_g102260' => 'hma', 'Hma1.2p1_0453F.1_g156190' => 'hma', 'Hma1.2p1_0695F.1_g204380' => 'hma', 'Hma1.2p1_0749F.1_g212650' => 'hma', 'Hma1.2p1_2156F.1_g315420' => 'hma', 'Hma1.2p1_2686F.1_g326940' => 'hma', 'HPP92_006428' => 'vpl', 'HPP92_012069' => 'vpl', 'HPP92_014129' => 'vpl', 'HPP92_014133' => 'vpl', 'HPP92_017315' => 'vpl', 'HPP92_026445' => 'vpl', 'HPP92_026446' => 'vpl', 'Hund00774' => 'sun', 'Hund07682' => 'sun', 'Hund21413' => 'sun', 'Hund23462' => 'sun', 'Hund23463' => 'sun', 'Lalb_Chr03g0027911' => 'lal', 'Lalb_Chr13g0304271' => 'lal', 'Lalb_Chr19g0137471' => 'lal', 'Lalb_Chr22g0350651' => 'lal', 'Lalb_Chr24g0395151' => 'lal', 'Lj1A1231T40' => 'lonja', 'Lj1A221T48' => 'lonja', 'Lj1C924T12' => 'lonja', 'Lj2C993G6' => 'lonja', 'Lj3g0005790' => 'lja', 'Lj3g0015432' => 'lja', 'Lj3g0017722' => 'lja', 'Lj3g0018497' => 'lja', 'Lj4g0025071' => 'lja', 'Lsat_1_v5_gn_1_129680' => 'lsa', 'Lsat_1_v5_gn_2_25321' => 'lsa', 'Lsat_1_v5_gn_2_95461' => 'lsa', 'Lsat_1_v5_gn_4_159620' => 'lsa', 'Lsat_1_v5_gn_6_41301' => 'lsa', 'Lsat_1_v5_gn_6_74660' => 'lsa', 'Lsat_1_v5_gn_7_11520' => 'lsa', 'Lsat_1_v5_gn_9_67680' => 'lsa', 'Manes.04G008300' => 'mes', 'Manes.04G008400' => 'mes', 'Manes.04G026500' => 'mes', 'Manes.10G135300' => 'mes', 'Manes.11G157300' => 'mes', 'Manes.12G074000' => 'mes', 'Manes.16G006200' => 'mes', 'Manes.17G026400' => 'mes', 'Mapoly0024s0086' => 'mpo', 'Mapoly0024s0087' => 'mpo', 'Mapoly0071s0057' => 'mpo', 'Mapoly0204s0012' => 'mpo', 'MBI04_g37681_MAGBIO' => 'mbi', 'MBI05_g17779_MAGBIO' => 'mbi', 'MBI12_g31184_MAGBIO' => 'mbi', 'MBI17_g11083_MAGBIO' => 'mbi', 'MBI18_g03883_MAGBIO' => 'mbi', 'MBI18_g28940_MAGBIO' => 'mbi', 'MCO01G690' => 'mco', 'MD03G1109900' => 'mdo', 'MD03G1134800' => 'mdo', 'MD05G1348000' => 'mdo', 'MD10G1322400' => 'mdo', 'MD11G1123300' => 'mdo', 'MD11G1157600' => 'mdo', 'Medtr2g084875' => 'mtr', 'Medtr2g088130' => 'mtr', 'Medtr4g055310' => 'mtr', 'Medtr4g061070' => 'mtr', 'Medtr4g132250' => 'mtr', 'MELO3C004795.2' => 'cme', 'MELO3C004797.2' => 'cme', 'MELO3C007396.2' => 'cme', 'MELO3C019277.2' => 'cme', 'MELO3C021449.2' => 'cme', 'MELO3C025736.2' => 'cme', 'Migut.D02175' => 'egut', 'Migut.H01573' => 'egut', 'Migut.M01327' => 'egut', 'Migut.N02513' => 'egut', 'MSTRG.14638' => 'ama', 'MSTRG.18632' => 'ama', 'MSTRG.7203' => 'ama', 'Nitab4.5_0000533g0140' => 'nta', 'Nitab4.5_0000888g0150' => 'nta', 'Nitab4.5_0001453g0040' => 'nta', 'Nitab4.5_0002827g0090' => 'nta', 'Nitab4.5_0003082g0040' => 'nta', 'Nitab4.5_0007799g0040' => 'nta', 'Nitab4.5_0008983g0010' => 'nta', 'Nitab4.5_0009017g0020' => 'nta', 'Nn1g02132' => 'nnu', 'Nn1g03492' => 'nnu', 'Nn1g03493' => 'nnu', 'Nn1g03494' => 'nnu', 'Nn1g07164' => 'nnu', 'Nn1g07291' => 'nnu', 'Nn2g10655' => 'nnu', 'Nn2g11652' => 'nnu', 'Nn2g14008' => 'nnu', 'Nn3g17476' => 'nnu', 'Nn3g17477' => 'nnu', 'Nn4g22370' => 'nnu', 'Nn4g25255' => 'nnu', 'Nn5g27755' => 'nnu', 'Nn6g34260' => 'nnu', 'Nn6g35041' => 'nnu', 'Oeu005924.1' => 'oeu', 'Oeu008383.1' => 'oeu', 'Oeu014928.1' => 'oeu', 'Oeu019889.1' => 'oeu', 'Oeu022271.1' => 'oeu', 'Oeu025271.1' => 'oeu', 'Oeu036302.1' => 'oeu', 'Oeu044100.1' => 'oeu', 'Os01g0528300' => 'osa', 'Os03g0286200' => 'osa', 'Os04g0406600' => 'osa', 'Os07g0512000' => 'osa', 'Os07g0694600' => 'osa', 'Os08g0411000' => 'osa', 'Os09g0565700' => 'osa', 'Os09g0566050' => 'osa', 'Os10g0523700' => 'osa', 'Peaxi162Scf00002g00514' => 'pax', 'Peaxi162Scf00047g01817' => 'pax', 'Peaxi162Scf00114g00001' => 'pax', 'Peaxi162Scf00147g00613' => 'pax', 'Peaxi162Scf00389g00425' => 'pax', 'PGR042G1139' => 'pgr', 'PGR042G3273' => 'pgr', 'PGR102G2180' => 'pgr', 'PGR119G0234' => 'pgr', 'PGR119G0668' => 'pgr', 'PGSC0003DMG400007122' => 'stu', 'PGSC0003DMG400016478' => 'stu', 'PGSC0003DMG400025374' => 'stu', 'PGSC0003DMG400026536' => 'stu', 'Phvul.003G079600' => 'pvu', 'Phvul.005G115600' => 'pvu', 'Phvul.005G127100' => 'pvu', 'Phvul.006G149500' => 'pvu', 'Phvul.006G149600' => 'pvu', 'Phvul.011G071800' => 'pvu', 'Phvul.011G090400' => 'pvu', 'Potri.004G013400' => 'ptr', 'Potri.004G188100' => 'ptr', 'Potri.008G195500' => 'ptr', 'Potri.009G148800' => 'ptr', 'Potri.011G004700' => 'ptr', 'Pp3c17_22810' => 'ppa', 'Pp3c18_4480' => 'ppa', 'Pp3c19_13030' => 'ppa', 'Pp3c1_33620' => 'ppa', 'Pp3c2_9380' => 'ppa', 'PRCOL_00001023' => 'pco', 'Prupe.3G216300' => 'ppe', 'Prupe.4G019500' => 'ppe', 'Prupe.6G092500' => 'ppe', 'Prupe.6G119200' => 'ppe', 'Psat0s1945g0080' => 'psa', 'Psat0s4167g0040' => 'psa', 'Psat1g185800' => 'psa', 'Psat4g006440' => 'psa', 'Psat4g006480' => 'psa', 'Psat4g168120' => 'psa', 'Psat5g255680' => 'psa', 'Psat5g261760' => 'psa', 'Psat7g222120' => 'psa', 'PSO063G7252' => 'pso', 'PSO170G4778' => 'pso', 'PSO210G2249' => 'pso', 'PSO339G2411' => 'pso', 'PSO339G2457' => 'pso', 'PSO339G2854' => 'pso', 'PSO339G4288' => 'pso', 'PSO339G4615' => 'pso', 'PSO384G2796' => 'pso', 'PSO384G2940' => 'pso', 'PSO384G4227' => 'pso', 'PSO478G1425' => 'pso', 'PSO541G3863' => 'pso', 'PSO675G0507' => 'pso', 'PSO782G0338' => 'pso', 'PSO832G0644' => 'pso', 'QL01p013664' => 'qlo', 'QL01p036598' => 'qlo', 'QL05p072984' => 'qlo', 'QL08p005768' => 'qlo', 'QL08p032743' => 'qlo', 'QL93p0073_0439' => 'qlo', 'QL93p0073_0444' => 'qlo', 'RcHm_v2.0_Chr5g0002851' => 'rch', 'RcHm_v2.0_Chr5g0055201' => 'rch', 'RcHm_v2.0_Chr5g0061191' => 'rch', 'RcHm_v2.0_Chr7g0203231' => 'rch', 'Rhsim01G0208100' => 'rsi', 'Rhsim01G0208200' => 'rsi', 'Rhsim02G0106500' => 'rsi', 'Rhsim03G0107900' => 'rsi', 'Rhsim06G0163400' => 'rsi', 'Rhsim13G0105200' => 'rsi', 'Sabra04G0006300' => 'sbr', 'Sabra04G0127000' => 'sbr', 'Sabra08G0148700' => 'sbr', 'Sabra09G0117400' => 'sbr', 'SalBow1G3326' => 'sbo', 'SalBow3G3228' => 'sbo', 'SalBow6G1634' => 'sbo', 'SalBow6G3603' => 'sbo', 'SalBow6G5266' => 'sbo', 'SalBow7G2265' => 'sbo', 'SalBow8G0850' => 'sbo', 'SalBow8G2592' => 'sbo', 'Sc05g0009240' => 'sci', 'Sc12g0002300' => 'sci', 'Sc21g0000100' => 'sci', 'Sc21g0004720' => 'sci', 'Sed0002949' => 'sed', 'Sed0004114' => 'sed', 'Sed0004306' => 'sed', 'Sed0006172' => 'sed', 'Sed0008413' => 'sed', 'Sed0013809' => 'sed', 'Sed0019556' => 'sed', 'SEGI_03570' => 'sgi', 'SEGI_07859' => 'sgi', 'SEGI_15042' => 'sgi', 'SEGI_16263' => 'sgi', 'SEGI_16552' => 'sgi', 'SEGI_24331' => 'sgi', 'SEGI_27316' => 'sgi', 'SEGI_29521' => 'sgi', 'SEGI_41342' => 'sgi', 'SGA_v2.0_scaffold27G11617' => 'sas', 'SGA_v2.0_scaffold316G48428' => 'sas', 'SGA_v2.0_scaffold49G18261' => 'sas', 'SGA_v2.0_scaffold7G03831' => 'sas', 'SGA_v2.0_scaffold93G28359' => 'sas', 'SHI02210' => 'shi', 'SHI06028' => 'shi', 'SHI06321' => 'shi', 'SMO111G0012' => 'smo', 'SMO228G0080' => 'smo', 'SMO356G0756' => 'smo', 'Solyc02g080620.3' => 'sly', 'Solyc06g074530.1' => 'sly', 'Solyc11g066890.1' => 'sly', 'Solyc11g072520.3' => 'sly', 'Sopen02g025330' => 'spe', 'Sopen06g031000' => 'spe', 'Sopen09g008240' => 'spe', 'Sopen09g025210' => 'spe', 'Sopen11g026600' => 'spe', 'Sopen11g030170' => 'spe', 'Sp1g10420' => 'spa', 'Sp3g06570' => 'spa', 'Sp4g10660' => 'spa', 'Sp5g16460' => 'spa', 'Sp6g22710' => 'spa', 'TAR365G0112' => 'tar', 'TAR369G0717' => 'tar', 'TAR374G0976' => 'tar', 'TAR623G1128' => 'tar', 'TAR626G1937' => 'tar', 'TAR627G0123' => 'tar', 'TAR628G0305' => 'tar', 'TAR636G1176' => 'tar', 'TAR636G2442' => 'tar', 'THA.LOC104800556' => 'tha', 'THA.LOC104809501' => 'tha', 'THA.LOC104815126' => 'tha', 'THA.LOC104815732' => 'tha', 'THA.LOC104823528' => 'tha', 'Thecc.02G365600' => 'tca', 'Thecc.06G222300' => 'tca', 'Thecc.09G261800' => 'tca', 'Thecc.09G291400' => 'tca', 'Thhalv10003028m.g' => 'esa', 'Thhalv10007886m.g' => 'esa', 'Thhalv10016085m.g' => 'esa', 'Thhalv10016681m.g' => 'esa', 'Thhalv10020951m.g' => 'esa', 'TPR.G15598' => 'tpr', 'TPR.G29305' => 'tpr', 'TPR.G32395' => 'tpr', 'TPR.G36998' => 'tpr', 'TPR.G4227' => 'tpr', 'TWI18G1433' => 'twi', 'TWI31G0755' => 'twi', 'TWI38G0912' => 'twi', 'TWI75G1097' => 'twi', 'TWI75G1619' => 'twi', 'TWI79G1336' => 'twi', 'unitig_0.g943' => 'ugi', 'unitig_0.g944' => 'ugi', 'unitig_22.g6646' => 'ugi', 'unitig_37.g12681' => 'ugi', 'unitig_8.g3290' => 'ugi', 'vmacro03278' => 'vma', 'vmacro12197' => 'vma', 'vmacro14478' => 'vma', 'vmacro15787' => 'vma', 'vmacro15789' => 'vma', 'vmacro15790' => 'vma', 'vmacro15806' => 'vma', 'vmacro22907' => 'vma', 'vmacro22908' => 'vma', 'vmacro22909' => 'vma', 'vmacro23108' => 'vma', 'VMungo0540G0540' => 'vmu', 'VMungo0540G2468' => 'vmu', 'VMungo1080G0390' => 'vmu', 'VMungo1080G1165' => 'vmu', 'VMungo1127G0170' => 'vmu', 'VMungo1127G2099' => 'vmu', 'VMungo1215G3013' => 'vmu', 'Zm00001eb013110' => 'zma', 'Zm00001eb084260' => 'zma', 'Zm00001eb096110' => 'zma', 'Zm00001eb217510' => 'zma', 'Zm00001eb322550' => 'zma', 'Zm00001eb390770' => 'zma', 'Zm00001eb397170' => 'zma', 'Zm00001eb404610' => 'zma', 'Zm00001eb421790' => 'zma' ) $gf_id = 'HOM05D000911' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000911' ) $data_identifier = 'HOM05D000911' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 16, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 5, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 6, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 8, 'nnu' => (int) 16, 'oeu' => (int) 8, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 5, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 16, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421790' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000911', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27780' => 'bna', 'A03p35380' => 'bna', 'A04p21160' => 'bna', 'A05p40570' => 'bna', 'A06p26900' => 'bna', 'A08p33230' => 'bna', 'A09p65960' => 'bna', 'A10p18290' => 'bna', 'Aa31LG1G12990' => 'aar', 'Aa31LG1G2980' => 'aar', 'Aa31LG4G14320' => 'aar', 'Aa31LG7G11800' => 'aar', 'Aa31sc36G50' => 'aar', 'Aa31sc36G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3721' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5459' => 'aag', 'Actinidia03028' => 'ach', 'Actinidia03753' => 'ach', 'Actinidia04187' => 'ach', 'Actinidia05509' => 'ach', 'Actinidia24180' => 'ach', 'Actinidia26906' => 'ach', 'Actinidia37097' => 'ach', 'Actinidia38249' => 'ach', 'Ah.01g003470' => 'amhyb', 'Ah.01g004580' => 'amhyb', 'Ah.01g014850' => 'amhyb', 'Ah.01g016830' => 'amhyb', 'Ah.14g088000' => 'amhyb', 'AL1G22980' => 'aly', 'AL3G18990' => 'aly', 'AL4G22440' => 'aly', 'AL4G33180' => 'aly', 'AL5G22920' => 'aly', 'AL6G33660' => 'aly', 'AL8G20720' => 'aly', 'Aqoxy1G00935' => 'aox', 'Aqoxy1G02094' => 'aox', 'Aqoxy2G01239' => 'aox', 'Aqoxy4G01870' => 'aox', 'Aqoxy7G00450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.36ZVTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71EM27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5D6C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH3WRE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3NCM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RIM768' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YB5YRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z36GDV' => 'arhy', 'AT1G08250' => 'ath', 'AT1G11790' => 'ath', 'AT2G27820' => 'ath', 'AT3G07630' => 'ath', 'AT3G44720' => 'ath', 'AT5G22630' => 'ath', 'ATR0693G304' => 'atr', 'ATR0794G109' => 'atr', 'ATR0820G120' => 'atr', 'ATR1159G064' => 'atr', 'Atru.chr10.2239' => 'acertr', 'Atru.chr3.3371' => 'acertr', 'Atru.chr6.3202' => 'acertr', 'AUR62006499' => 'cqu', 'AUR62012718' => 'cqu', 'AUR62021938' => 'cqu', 'AUR62023932' => 'cqu', 'AUR62025034' => 'cqu', 'AUR62025035' => 'cqu', 'AUR62038307' => 'cqu', 'AUR62043466' => 'cqu', 'BcaB02g10748' => 'bca', 'BcaB03g13231' => 'bca', 'BcaB03g14689' => 'bca', 'BcaB05g22716' => 'bca', 'BcaB06g28172' => 'bca', 'BcaB08g36413' => 'bca', 'BcaC01g02186' => 'bca', 'BcaC01g04272' => 'bca', 'BcaC02g08080' => 'bca', 'BcaC02g08227' => 'bca', 'BcaC03g13901' => 'bca', 'BcaC04g19593' => 'bca', 'BcaC04g20874' => 'bca', 'BcaC05g29557' => 'bca', 'BcaC06g35505' => 'bca', 'BcaC07g41954' => 'bca', 'BcaC07g41955' => 'bca', 'BcaC07g41956' => 'bca', 'BcaC07g42519' => 'bca', 'BcaC07g42520' => 'bca', 'BcaC07g42523' => 'bca', 'BcaC07g42524' => 'bca', 'BcaC07g42525' => 'bca', 'BcaC08g47480' => 'bca', 'BcaC08g47481' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00530' => 'bna', 'BolC2t07178H' => 'bol', 'BolC3t16567H' => 'bol', 'BolC4t27234H' => 'bol', 'BolC5t29728H' => 'bol', 'BolC5t34622H' => 'bol', 'BolC6t40321H' => 'bol', 'BolC7t42028H' => 'bol', 'BolC8t49125H' => 'bol', 'BolC8t52538H' => 'bol', 'BolC8t52539H' => 'bol', 'BolC9t56681H' => 'bol', 'BolC9t58266H' => 'bol', 'BolSC21t60294H' => 'bol', 'BraA02t05670Z' => 'bra', 'BraA03t12716Z' => 'bra', 'BraA04t17685Z' => 'bra', 'BraA05t22788Z' => 'bra', 'BraA06t24032Z' => 'bra', 'BraA06t25625Z' => 'bra', 'BraA07t27930Z' => 'bra', 'BraA08t35242Z' => 'bra', 'BraA09t38609Z' => 'bra', 'BraA10t43905Z' => 'bra', 'C02p11060' => 'bna', 'C03p42990' => 'bna', 'C03p67310' => 'bna', 'C04p56990' => 'bna', 'C04p58660' => 'bna', 'C05p09890' => 'bna', 'C05p59680' => 'bna', 'C06p19830' => 'bna', 'C06p53040' => 'bna', 'C07p15230' => 'bna', 'C08p50070' => 'bna', 'C08p50090' => 'bna', 'C09p38330' => 'bna', 'C09p53940' => 'bna', 'CAN.G1014.1' => 'can', 'CAN.G644.30' => 'can', 'CAN.G84.47' => 'can', 'CAN.G919.8' => 'can', 'CANSAT54G0113' => 'cansat', 'CANSAT54G1286' => 'cansat', 'CANSAT64G1020' => 'cansat', 'CARHR008080' => 'chi', 'CARHR008090' => 'chi', 'CARHR012130' => 'chi', 'CARHR038390' => 'chi', 'CARHR082330' => 'chi', 'CARHR120520' => 'chi', 'CARHR151470' => 'chi', 'CARHR190950' => 'chi', 'Carub.0001s0760' => 'cru', 'Carub.0001s1146' => 'cru', 'Carub.0003s0721' => 'cru', 'Carub.0004s0858' => 'cru', 'Carub.0005s1040' => 'cru', 'Carub.0006s2035' => 'cru', 'Carub.0015s0005' => 'cru', 'Ca_01607_v3' => 'car', 'Ca_01677_v3' => 'car', 'Ca_06087_v3' => 'car', 'Ca_19238_v3' => 'car', 'Ca_19373_v3' => 'car', 'Ca_21079_v3' => 'car', 'CBR_g54016' => 'cbr', 'CBR_g54018' => 'cbr', 'CBR_g54020' => 'cbr', 'Cc01_g09780' => 'ccan', 'Cc01_g11680' => 'ccan', 'Cc02_g15610' => 'ccan', 'Cc05_g04350' => 'ccan', 'Cc09_g01580' => 'ccan', 'CDE01G0795' => 'cde', 'CDE02G2024' => 'cde', 'CDE02G2260' => 'cde', 'CDE02G4561' => 'cde', 'CDE05G2733' => 'cde', 'CDE05G3422' => 'cde', 'CDE06G2003' => 'cde', 'CDE08G0576' => 'cde', 'CDE09G0048' => 'cde', 'CDE11G0805' => 'cde', 'Cfa003644' => 'cfa', 'Cfa006290' => 'cfa', 'Cfa010080' => 'cfa', 'Cfa011376' => 'cfa', 'Cfa011576' => 'cfa', 'Cfa011577' => 'cfa', 'Cfa014389' => 'cfa', 'Ciclev10006044m.g' => 'ccl', 'Ciclev10006954m.g' => 'ccl', 'Ciclev10015131m.g' => 'ccl', 'Ciclev10015580m.g' => 'ccl', 'Ciclev10028359m.g' => 'ccl', 'Ciclev10028573m.g' => 'ccl', 'CiPaw.03G159300' => 'cil', 'CiPaw.04G115100' => 'cil', 'CiPaw.09G092800' => 'cil', 'CiPaw.10G071800' => 'cil', 'CiPaw.13G105800' => 'cil', 'CiPaw.13G141000' => 'cil', 'CiPaw.14G103400' => 'cil', 'ClCG01G012700' => 'cla', 'ClCG01G012720' => 'cla', 'ClCG01G021920' => 'cla', 'ClCG02G008870' => 'cla', 'ClCG02G020840' => 'cla', 'ClCG02G021930' => 'cla', 'COL.COLO4_19302' => 'col', 'COL.COLO4_25262' => 'col', 'COL.COLO4_31788' => 'col', 'Cpa.g.c34684' => 'cpa', 'Cpa.g.c36520.1' => 'cpa', 'Cpa.g.c45626' => 'cpa', 'Cpa.g.sc121.17' => 'cpa', 'Cpa.g.sc13.22' => 'cpa', 'Cpa.g.sc87.88' => 'cpa', 'Cre06.g261800' => 'cre', 'CsaV3_1G014500' => 'csa', 'CsaV3_1G014510' => 'csa', 'CsaV3_2G034880' => 'csa', 'CsaV3_6G014760' => 'csa', 'CsaV3_6G021500' => 'csa', 'CsaV3_6G048980' => 'csa', 'CSS0002511' => 'camsi', 'CSS0007556' => 'camsi', 'CSS0008532' => 'camsi', 'CSS0009709' => 'camsi', 'CSS0010486' => 'camsi', 'CSS0016768' => 'camsi', 'CSS0023512' => 'camsi', 'CSS0025341' => 'camsi', 'CSS0027999' => 'camsi', 'CSS0028944' => 'camsi', 'CSS0032292' => 'camsi', 'CSS0032464' => 'camsi', 'CSS0037153' => 'camsi', 'CSS0039256' => 'camsi', 'CSS0048392' => 'camsi', 'CSS0050458' => 'camsi', 'DCAR_004224' => 'dca', 'DCAR_006147' => 'dca', 'DCAR_006465' => 'dca', 'DCAR_008159' => 'dca', 'DCAR_012164' => 'dca', 'DCAR_019764' => 'dca', 'Dinv05418' => 'din', 'Dinv10839' => 'din', 'Dinv12521' => 'din', 'Dinv13900' => 'din', 'Dinv29426' => 'din', 'Duzib150G0263' => 'dzi', 'Duzib168G1178' => 'dzi', 'Duzib168G1924' => 'dzi', 'Duzib170G0299' => 'dzi', 'Duzib170G0813' => 'dzi', 'Duzib235G1128' => 'dzi', 'Duzib248G1060' => 'dzi', 'ECA232G1910' => 'eca', 'ECA233G4621' => 'eca', 'ECA238G1216' => 'eca', 'ECA238G1784' => 'eca', 'ECA248G1242' => 'eca', 'EL10Ac8g20071' => 'bvu', 'EL10Ac9g21086' => 'bvu', 'EL10Ac9g22407' => 'bvu', 'EL10Ac9g22412' => 'bvu', 'Eucgr.A01119' => 'egr', 'Eucgr.E04043' => 'egr', 'Eucgr.J00428' => 'egr', 'Eucgr.J00958' => 'egr', 'FAN11G3091' => 'fan', 'FAN11G3651' => 'fan', 'FAN16G2566' => 'fan', 'FAN21G3155' => 'fan', 'FAN21G3400' => 'fan', 'FAN21G3543' => 'fan', 'FAN25G0234' => 'fan', 'FAN25G1422' => 'fan', 'FAN25G3392' => 'fan', 'FvH4_3g01940' => 'fve', 'FvH4_3g29870' => 'fve', 'FvH4_3g33680' => 'fve', 'Glyma.09G004200' => 'gma', 'Glyma.11G151288' => 'gma', 'Glyma.11G189100' => 'gma', 'Glyma.12G072500' => 'gma', 'Glyma.12G085500' => 'gma', 'Glyma.12G181800' => 'gma', 'Glyma.12G193000' => 'gma', 'Glyma.13G309300' => 'gma', 'Glyma.13G319000' => 'gma', 'Glyma.17G012600' => 'gma', 'Gohir.A06G148600' => 'ghi', 'Gohir.A07G115800' => 'ghi', 'Gohir.A08G003600' => 'ghi', 'Gohir.A09G093300' => 'ghi', 'Gohir.A09G105400' => 'ghi', 'Gohir.A09G105500' => 'ghi', 'Gohir.D06G154600' => 'ghi', 'Gohir.D07G120200' => 'ghi', 'Gohir.D08G013900' => 'ghi', 'Gohir.D09G093100' => 'ghi', 'Gohir.D09G102200' => 'ghi', 'Gohir.D09G102300' => 'ghi', 'Gorai.001G129400' => 'gra', 'Gorai.004G008200' => 'gra', 'Gorai.006G109800' => 'gra', 'Gorai.006G119500' => 'gra', 'Gorai.006G121300' => 'gra', 'Gorai.010G180700' => 'gra', 'GSVIVG01012716001' => 'vvi', 'GSVIVG01025118001' => 'vvi', 'GSVIVG01030439001' => 'vvi', 'GSVIVG01031397001' => 'vvi', 'HanXRQChr01g0004201' => 'han', 'HanXRQChr02g0054941' => 'han', 'HanXRQChr05g0141811' => 'han', 'HanXRQChr07g0197751' => 'han', 'HanXRQChr11g0346691' => 'han', 'HanXRQChr13g0396971' => 'han', 'HanXRQChr14g0432951' => 'han', 'HanXRQChr14g0452001' => 'han', 'HanXRQChr15g0496681' => 'han', 'HanXRQChr17g0557491' => 'han', 'HanXRQChr17g0557501' => 'han', 'Haze_06809' => 'cav', 'Haze_12852' => 'cav', 'Haze_15850' => 'cav', 'Haze_23446' => 'cav', 'Haze_23942' => 'cav', 'Haze_23943' => 'cav', 'Hma1.2p1_0091F.1_g046450' => 'hma', 'Hma1.2p1_0128F.1_g059910' => 'hma', 'Hma1.2p1_0249F.1_g102260' => 'hma', 'Hma1.2p1_0453F.1_g156190' => 'hma', 'Hma1.2p1_0695F.1_g204380' => 'hma', 'Hma1.2p1_0749F.1_g212650' => 'hma', 'Hma1.2p1_2156F.1_g315420' => 'hma', 'Hma1.2p1_2686F.1_g326940' => 'hma', 'HPP92_006428' => 'vpl', 'HPP92_012069' => 'vpl', 'HPP92_014129' => 'vpl', 'HPP92_014133' => 'vpl', 'HPP92_017315' => 'vpl', 'HPP92_026445' => 'vpl', 'HPP92_026446' => 'vpl', 'Hund00774' => 'sun', 'Hund07682' => 'sun', 'Hund21413' => 'sun', 'Hund23462' => 'sun', 'Hund23463' => 'sun', 'Lalb_Chr03g0027911' => 'lal', 'Lalb_Chr13g0304271' => 'lal', 'Lalb_Chr19g0137471' => 'lal', 'Lalb_Chr22g0350651' => 'lal', 'Lalb_Chr24g0395151' => 'lal', 'Lj1A1231T40' => 'lonja', 'Lj1A221T48' => 'lonja', 'Lj1C924T12' => 'lonja', 'Lj2C993G6' => 'lonja', 'Lj3g0005790' => 'lja', 'Lj3g0015432' => 'lja', 'Lj3g0017722' => 'lja', 'Lj3g0018497' => 'lja', 'Lj4g0025071' => 'lja', 'Lsat_1_v5_gn_1_129680' => 'lsa', 'Lsat_1_v5_gn_2_25321' => 'lsa', 'Lsat_1_v5_gn_2_95461' => 'lsa', 'Lsat_1_v5_gn_4_159620' => 'lsa', 'Lsat_1_v5_gn_6_41301' => 'lsa', 'Lsat_1_v5_gn_6_74660' => 'lsa', 'Lsat_1_v5_gn_7_11520' => 'lsa', 'Lsat_1_v5_gn_9_67680' => 'lsa', 'Manes.04G008300' => 'mes', 'Manes.04G008400' => 'mes', 'Manes.04G026500' => 'mes', 'Manes.10G135300' => 'mes', 'Manes.11G157300' => 'mes', 'Manes.12G074000' => 'mes', 'Manes.16G006200' => 'mes', 'Manes.17G026400' => 'mes', 'Mapoly0024s0086' => 'mpo', 'Mapoly0024s0087' => 'mpo', 'Mapoly0071s0057' => 'mpo', 'Mapoly0204s0012' => 'mpo', 'MBI04_g37681_MAGBIO' => 'mbi', 'MBI05_g17779_MAGBIO' => 'mbi', 'MBI12_g31184_MAGBIO' => 'mbi', 'MBI17_g11083_MAGBIO' => 'mbi', 'MBI18_g03883_MAGBIO' => 'mbi', 'MBI18_g28940_MAGBIO' => 'mbi', 'MCO01G690' => 'mco', 'MD03G1109900' => 'mdo', 'MD03G1134800' => 'mdo', 'MD05G1348000' => 'mdo', 'MD10G1322400' => 'mdo', 'MD11G1123300' => 'mdo', 'MD11G1157600' => 'mdo', 'Medtr2g084875' => 'mtr', 'Medtr2g088130' => 'mtr', 'Medtr4g055310' => 'mtr', 'Medtr4g061070' => 'mtr', 'Medtr4g132250' => 'mtr', 'MELO3C004795.2' => 'cme', 'MELO3C004797.2' => 'cme', 'MELO3C007396.2' => 'cme', 'MELO3C019277.2' => 'cme', 'MELO3C021449.2' => 'cme', 'MELO3C025736.2' => 'cme', 'Migut.D02175' => 'egut', 'Migut.H01573' => 'egut', 'Migut.M01327' => 'egut', 'Migut.N02513' => 'egut', 'MSTRG.14638' => 'ama', 'MSTRG.18632' => 'ama', 'MSTRG.7203' => 'ama', 'Nitab4.5_0000533g0140' => 'nta', 'Nitab4.5_0000888g0150' => 'nta', 'Nitab4.5_0001453g0040' => 'nta', 'Nitab4.5_0002827g0090' => 'nta', 'Nitab4.5_0003082g0040' => 'nta', 'Nitab4.5_0007799g0040' => 'nta', 'Nitab4.5_0008983g0010' => 'nta', 'Nitab4.5_0009017g0020' => 'nta', 'Nn1g02132' => 'nnu', 'Nn1g03492' => 'nnu', 'Nn1g03493' => 'nnu', 'Nn1g03494' => 'nnu', 'Nn1g07164' => 'nnu', 'Nn1g07291' => 'nnu', 'Nn2g10655' => 'nnu', 'Nn2g11652' => 'nnu', 'Nn2g14008' => 'nnu', 'Nn3g17476' => 'nnu', 'Nn3g17477' => 'nnu', 'Nn4g22370' => 'nnu', 'Nn4g25255' => 'nnu', 'Nn5g27755' => 'nnu', 'Nn6g34260' => 'nnu', 'Nn6g35041' => 'nnu', 'Oeu005924.1' => 'oeu', 'Oeu008383.1' => 'oeu', 'Oeu014928.1' => 'oeu', 'Oeu019889.1' => 'oeu', 'Oeu022271.1' => 'oeu', 'Oeu025271.1' => 'oeu', 'Oeu036302.1' => 'oeu', 'Oeu044100.1' => 'oeu', 'Os01g0528300' => 'osa', 'Os03g0286200' => 'osa', 'Os04g0406600' => 'osa', 'Os07g0512000' => 'osa', 'Os07g0694600' => 'osa', 'Os08g0411000' => 'osa', 'Os09g0565700' => 'osa', 'Os09g0566050' => 'osa', 'Os10g0523700' => 'osa', 'Peaxi162Scf00002g00514' => 'pax', 'Peaxi162Scf00047g01817' => 'pax', 'Peaxi162Scf00114g00001' => 'pax', 'Peaxi162Scf00147g00613' => 'pax', 'Peaxi162Scf00389g00425' => 'pax', 'PGR042G1139' => 'pgr', 'PGR042G3273' => 'pgr', 'PGR102G2180' => 'pgr', 'PGR119G0234' => 'pgr', 'PGR119G0668' => 'pgr', 'PGSC0003DMG400007122' => 'stu', 'PGSC0003DMG400016478' => 'stu', 'PGSC0003DMG400025374' => 'stu', 'PGSC0003DMG400026536' => 'stu', 'Phvul.003G079600' => 'pvu', 'Phvul.005G115600' => 'pvu', 'Phvul.005G127100' => 'pvu', 'Phvul.006G149500' => 'pvu', 'Phvul.006G149600' => 'pvu', 'Phvul.011G071800' => 'pvu', 'Phvul.011G090400' => 'pvu', 'Potri.004G013400' => 'ptr', 'Potri.004G188100' => 'ptr', 'Potri.008G195500' => 'ptr', 'Potri.009G148800' => 'ptr', 'Potri.011G004700' => 'ptr', 'Pp3c17_22810' => 'ppa', 'Pp3c18_4480' => 'ppa', 'Pp3c19_13030' => 'ppa', 'Pp3c1_33620' => 'ppa', 'Pp3c2_9380' => 'ppa', 'PRCOL_00001023' => 'pco', 'Prupe.3G216300' => 'ppe', 'Prupe.4G019500' => 'ppe', 'Prupe.6G092500' => 'ppe', 'Prupe.6G119200' => 'ppe', 'Psat0s1945g0080' => 'psa', 'Psat0s4167g0040' => 'psa', 'Psat1g185800' => 'psa', 'Psat4g006440' => 'psa', 'Psat4g006480' => 'psa', 'Psat4g168120' => 'psa', 'Psat5g255680' => 'psa', 'Psat5g261760' => 'psa', 'Psat7g222120' => 'psa', 'PSO063G7252' => 'pso', 'PSO170G4778' => 'pso', 'PSO210G2249' => 'pso', 'PSO339G2411' => 'pso', 'PSO339G2457' => 'pso', 'PSO339G2854' => 'pso', 'PSO339G4288' => 'pso', 'PSO339G4615' => 'pso', 'PSO384G2796' => 'pso', 'PSO384G2940' => 'pso', 'PSO384G4227' => 'pso', 'PSO478G1425' => 'pso', 'PSO541G3863' => 'pso', 'PSO675G0507' => 'pso', 'PSO782G0338' => 'pso', 'PSO832G0644' => 'pso', 'QL01p013664' => 'qlo', 'QL01p036598' => 'qlo', 'QL05p072984' => 'qlo', 'QL08p005768' => 'qlo', 'QL08p032743' => 'qlo', 'QL93p0073_0439' => 'qlo', 'QL93p0073_0444' => 'qlo', 'RcHm_v2.0_Chr5g0002851' => 'rch', 'RcHm_v2.0_Chr5g0055201' => 'rch', 'RcHm_v2.0_Chr5g0061191' => 'rch', 'RcHm_v2.0_Chr7g0203231' => 'rch', 'Rhsim01G0208100' => 'rsi', 'Rhsim01G0208200' => 'rsi', 'Rhsim02G0106500' => 'rsi', 'Rhsim03G0107900' => 'rsi', 'Rhsim06G0163400' => 'rsi', 'Rhsim13G0105200' => 'rsi', 'Sabra04G0006300' => 'sbr', 'Sabra04G0127000' => 'sbr', 'Sabra08G0148700' => 'sbr', 'Sabra09G0117400' => 'sbr', 'SalBow1G3326' => 'sbo', 'SalBow3G3228' => 'sbo', 'SalBow6G1634' => 'sbo', 'SalBow6G3603' => 'sbo', 'SalBow6G5266' => 'sbo', 'SalBow7G2265' => 'sbo', 'SalBow8G0850' => 'sbo', 'SalBow8G2592' => 'sbo', 'Sc05g0009240' => 'sci', 'Sc12g0002300' => 'sci', 'Sc21g0000100' => 'sci', 'Sc21g0004720' => 'sci', 'Sed0002949' => 'sed', 'Sed0004114' => 'sed', 'Sed0004306' => 'sed', 'Sed0006172' => 'sed', 'Sed0008413' => 'sed', 'Sed0013809' => 'sed', 'Sed0019556' => 'sed', 'SEGI_03570' => 'sgi', 'SEGI_07859' => 'sgi', 'SEGI_15042' => 'sgi', 'SEGI_16263' => 'sgi', 'SEGI_16552' => 'sgi', 'SEGI_24331' => 'sgi', 'SEGI_27316' => 'sgi', 'SEGI_29521' => 'sgi', 'SEGI_41342' => 'sgi', 'SGA_v2.0_scaffold27G11617' => 'sas', 'SGA_v2.0_scaffold316G48428' => 'sas', 'SGA_v2.0_scaffold49G18261' => 'sas', 'SGA_v2.0_scaffold7G03831' => 'sas', 'SGA_v2.0_scaffold93G28359' => 'sas', 'SHI02210' => 'shi', 'SHI06028' => 'shi', 'SHI06321' => 'shi', 'SMO111G0012' => 'smo', 'SMO228G0080' => 'smo', 'SMO356G0756' => 'smo', 'Solyc02g080620.3' => 'sly', 'Solyc06g074530.1' => 'sly', 'Solyc11g066890.1' => 'sly', 'Solyc11g072520.3' => 'sly', 'Sopen02g025330' => 'spe', 'Sopen06g031000' => 'spe', 'Sopen09g008240' => 'spe', 'Sopen09g025210' => 'spe', 'Sopen11g026600' => 'spe', 'Sopen11g030170' => 'spe', 'Sp1g10420' => 'spa', 'Sp3g06570' => 'spa', 'Sp4g10660' => 'spa', 'Sp5g16460' => 'spa', 'Sp6g22710' => 'spa', 'TAR365G0112' => 'tar', 'TAR369G0717' => 'tar', 'TAR374G0976' => 'tar', 'TAR623G1128' => 'tar', 'TAR626G1937' => 'tar', 'TAR627G0123' => 'tar', 'TAR628G0305' => 'tar', 'TAR636G1176' => 'tar', 'TAR636G2442' => 'tar', 'THA.LOC104800556' => 'tha', 'THA.LOC104809501' => 'tha', 'THA.LOC104815126' => 'tha', 'THA.LOC104815732' => 'tha', 'THA.LOC104823528' => 'tha', 'Thecc.02G365600' => 'tca', 'Thecc.06G222300' => 'tca', 'Thecc.09G261800' => 'tca', 'Thecc.09G291400' => 'tca', 'Thhalv10003028m.g' => 'esa', 'Thhalv10007886m.g' => 'esa', 'Thhalv10016085m.g' => 'esa', 'Thhalv10016681m.g' => 'esa', 'Thhalv10020951m.g' => 'esa', 'TPR.G15598' => 'tpr', 'TPR.G29305' => 'tpr', 'TPR.G32395' => 'tpr', 'TPR.G36998' => 'tpr', 'TPR.G4227' => 'tpr', 'TWI18G1433' => 'twi', 'TWI31G0755' => 'twi', 'TWI38G0912' => 'twi', 'TWI75G1097' => 'twi', 'TWI75G1619' => 'twi', 'TWI79G1336' => 'twi', 'unitig_0.g943' => 'ugi', 'unitig_0.g944' => 'ugi', 'unitig_22.g6646' => 'ugi', 'unitig_37.g12681' => 'ugi', 'unitig_8.g3290' => 'ugi', 'vmacro03278' => 'vma', 'vmacro12197' => 'vma', 'vmacro14478' => 'vma', 'vmacro15787' => 'vma', 'vmacro15789' => 'vma', 'vmacro15790' => 'vma', 'vmacro15806' => 'vma', 'vmacro22907' => 'vma', 'vmacro22908' => 'vma', 'vmacro22909' => 'vma', 'vmacro23108' => 'vma', 'VMungo0540G0540' => 'vmu', 'VMungo0540G2468' => 'vmu', 'VMungo1080G0390' => 'vmu', 'VMungo1080G1165' => 'vmu', 'VMungo1127G0170' => 'vmu', 'VMungo1127G2099' => 'vmu', 'VMungo1215G3013' => 'vmu', 'Zm00001eb013110' => 'zma', 'Zm00001eb084260' => 'zma', 'Zm00001eb096110' => 'zma', 'Zm00001eb217510' => 'zma', 'Zm00001eb322550' => 'zma', 'Zm00001eb390770' => 'zma', 'Zm00001eb397170' => 'zma', 'Zm00001eb404610' => 'zma', 'Zm00001eb421790' => 'zma' ), 'gf_id' => 'HOM05D000911', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000911' ), 'data_identifier' => 'HOM05D000911', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000911', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27780' => 'bna', 'A03p35380' => 'bna', 'A04p21160' => 'bna', 'A05p40570' => 'bna', 'A06p26900' => 'bna', 'A08p33230' => 'bna', 'A09p65960' => 'bna', 'A10p18290' => 'bna', 'Aa31LG1G12990' => 'aar', 'Aa31LG1G2980' => 'aar', 'Aa31LG4G14320' => 'aar', 'Aa31LG7G11800' => 'aar', 'Aa31sc36G50' => 'aar', 'Aa31sc36G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3721' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5459' => 'aag', 'Actinidia03028' => 'ach', 'Actinidia03753' => 'ach', 'Actinidia04187' => 'ach', 'Actinidia05509' => 'ach', 'Actinidia24180' => 'ach', 'Actinidia26906' => 'ach', 'Actinidia37097' => 'ach', 'Actinidia38249' => 'ach', 'Ah.01g003470' => 'amhyb', 'Ah.01g004580' => 'amhyb', 'Ah.01g014850' => 'amhyb', 'Ah.01g016830' => 'amhyb', 'Ah.14g088000' => 'amhyb', 'AL1G22980' => 'aly', 'AL3G18990' => 'aly', 'AL4G22440' => 'aly', 'AL4G33180' => 'aly', 'AL5G22920' => 'aly', 'AL6G33660' => 'aly', 'AL8G20720' => 'aly', 'Aqoxy1G00935' => 'aox', 'Aqoxy1G02094' => 'aox', 'Aqoxy2G01239' => 'aox', 'Aqoxy4G01870' => 'aox', 'Aqoxy7G00450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.36ZVTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71EM27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5D6C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH3WRE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3NCM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RIM768' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YB5YRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z36GDV' => 'arhy', 'AT1G08250' => 'ath', 'AT1G11790' => 'ath', 'AT2G27820' => 'ath', 'AT3G07630' => 'ath', 'AT3G44720' => 'ath', 'AT5G22630' => 'ath', 'ATR0693G304' => 'atr', 'ATR0794G109' => 'atr', 'ATR0820G120' => 'atr', 'ATR1159G064' => 'atr', 'Atru.chr10.2239' => 'acertr', 'Atru.chr3.3371' => 'acertr', 'Atru.chr6.3202' => 'acertr', 'AUR62006499' => 'cqu', 'AUR62012718' => 'cqu', 'AUR62021938' => 'cqu', 'AUR62023932' => 'cqu', 'AUR62025034' => 'cqu', 'AUR62025035' => 'cqu', 'AUR62038307' => 'cqu', 'AUR62043466' => 'cqu', 'BcaB02g10748' => 'bca', 'BcaB03g13231' => 'bca', 'BcaB03g14689' => 'bca', 'BcaB05g22716' => 'bca', 'BcaB06g28172' => 'bca', 'BcaB08g36413' => 'bca', 'BcaC01g02186' => 'bca', 'BcaC01g04272' => 'bca', 'BcaC02g08080' => 'bca', 'BcaC02g08227' => 'bca', 'BcaC03g13901' => 'bca', 'BcaC04g19593' => 'bca', 'BcaC04g20874' => 'bca', 'BcaC05g29557' => 'bca', 'BcaC06g35505' => 'bca', 'BcaC07g41954' => 'bca', 'BcaC07g41955' => 'bca', 'BcaC07g41956' => 'bca', 'BcaC07g42519' => 'bca', 'BcaC07g42520' => 'bca', 'BcaC07g42523' => 'bca', 'BcaC07g42524' => 'bca', 'BcaC07g42525' => 'bca', 'BcaC08g47480' => 'bca', 'BcaC08g47481' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00530' => 'bna', 'BolC2t07178H' => 'bol', 'BolC3t16567H' => 'bol', 'BolC4t27234H' => 'bol', 'BolC5t29728H' => 'bol', 'BolC5t34622H' => 'bol', 'BolC6t40321H' => 'bol', 'BolC7t42028H' => 'bol', 'BolC8t49125H' => 'bol', 'BolC8t52538H' => 'bol', 'BolC8t52539H' => 'bol', 'BolC9t56681H' => 'bol', 'BolC9t58266H' => 'bol', 'BolSC21t60294H' => 'bol', 'BraA02t05670Z' => 'bra', 'BraA03t12716Z' => 'bra', 'BraA04t17685Z' => 'bra', 'BraA05t22788Z' => 'bra', 'BraA06t24032Z' => 'bra', 'BraA06t25625Z' => 'bra', 'BraA07t27930Z' => 'bra', 'BraA08t35242Z' => 'bra', 'BraA09t38609Z' => 'bra', 'BraA10t43905Z' => 'bra', 'C02p11060' => 'bna', 'C03p42990' => 'bna', 'C03p67310' => 'bna', 'C04p56990' => 'bna', 'C04p58660' => 'bna', 'C05p09890' => 'bna', 'C05p59680' => 'bna', 'C06p19830' => 'bna', 'C06p53040' => 'bna', 'C07p15230' => 'bna', 'C08p50070' => 'bna', 'C08p50090' => 'bna', 'C09p38330' => 'bna', 'C09p53940' => 'bna', 'CAN.G1014.1' => 'can', 'CAN.G644.30' => 'can', 'CAN.G84.47' => 'can', 'CAN.G919.8' => 'can', 'CANSAT54G0113' => 'cansat', 'CANSAT54G1286' => 'cansat', 'CANSAT64G1020' => 'cansat', 'CARHR008080' => 'chi', 'CARHR008090' => 'chi', 'CARHR012130' => 'chi', 'CARHR038390' => 'chi', 'CARHR082330' => 'chi', 'CARHR120520' => 'chi', 'CARHR151470' => 'chi', 'CARHR190950' => 'chi', 'Carub.0001s0760' => 'cru', 'Carub.0001s1146' => 'cru', 'Carub.0003s0721' => 'cru', 'Carub.0004s0858' => 'cru', 'Carub.0005s1040' => 'cru', 'Carub.0006s2035' => 'cru', 'Carub.0015s0005' => 'cru', 'Ca_01607_v3' => 'car', 'Ca_01677_v3' => 'car', 'Ca_06087_v3' => 'car', 'Ca_19238_v3' => 'car', 'Ca_19373_v3' => 'car', 'Ca_21079_v3' => 'car', 'CBR_g54016' => 'cbr', 'CBR_g54018' => 'cbr', 'CBR_g54020' => 'cbr', 'Cc01_g09780' => 'ccan', 'Cc01_g11680' => 'ccan', 'Cc02_g15610' => 'ccan', 'Cc05_g04350' => 'ccan', 'Cc09_g01580' => 'ccan', 'CDE01G0795' => 'cde', 'CDE02G2024' => 'cde', 'CDE02G2260' => 'cde', 'CDE02G4561' => 'cde', 'CDE05G2733' => 'cde', 'CDE05G3422' => 'cde', 'CDE06G2003' => 'cde', 'CDE08G0576' => 'cde', 'CDE09G0048' => 'cde', 'CDE11G0805' => 'cde', 'Cfa003644' => 'cfa', 'Cfa006290' => 'cfa', 'Cfa010080' => 'cfa', 'Cfa011376' => 'cfa', 'Cfa011576' => 'cfa', 'Cfa011577' => 'cfa', 'Cfa014389' => 'cfa', 'Ciclev10006044m.g' => 'ccl', 'Ciclev10006954m.g' => 'ccl', 'Ciclev10015131m.g' => 'ccl', 'Ciclev10015580m.g' => 'ccl', 'Ciclev10028359m.g' => 'ccl', 'Ciclev10028573m.g' => 'ccl', 'CiPaw.03G159300' => 'cil', 'CiPaw.04G115100' => 'cil', 'CiPaw.09G092800' => 'cil', 'CiPaw.10G071800' => 'cil', 'CiPaw.13G105800' => 'cil', 'CiPaw.13G141000' => 'cil', 'CiPaw.14G103400' => 'cil', 'ClCG01G012700' => 'cla', 'ClCG01G012720' => 'cla', 'ClCG01G021920' => 'cla', 'ClCG02G008870' => 'cla', 'ClCG02G020840' => 'cla', 'ClCG02G021930' => 'cla', 'COL.COLO4_19302' => 'col', 'COL.COLO4_25262' => 'col', 'COL.COLO4_31788' => 'col', 'Cpa.g.c34684' => 'cpa', 'Cpa.g.c36520.1' => 'cpa', 'Cpa.g.c45626' => 'cpa', 'Cpa.g.sc121.17' => 'cpa', 'Cpa.g.sc13.22' => 'cpa', 'Cpa.g.sc87.88' => 'cpa', 'Cre06.g261800' => 'cre', 'CsaV3_1G014500' => 'csa', 'CsaV3_1G014510' => 'csa', 'CsaV3_2G034880' => 'csa', 'CsaV3_6G014760' => 'csa', 'CsaV3_6G021500' => 'csa', 'CsaV3_6G048980' => 'csa', 'CSS0002511' => 'camsi', 'CSS0007556' => 'camsi', 'CSS0008532' => 'camsi', 'CSS0009709' => 'camsi', 'CSS0010486' => 'camsi', 'CSS0016768' => 'camsi', 'CSS0023512' => 'camsi', 'CSS0025341' => 'camsi', 'CSS0027999' => 'camsi', 'CSS0028944' => 'camsi', 'CSS0032292' => 'camsi', 'CSS0032464' => 'camsi', 'CSS0037153' => 'camsi', 'CSS0039256' => 'camsi', 'CSS0048392' => 'camsi', 'CSS0050458' => 'camsi', 'DCAR_004224' => 'dca', 'DCAR_006147' => 'dca', 'DCAR_006465' => 'dca', 'DCAR_008159' => 'dca', 'DCAR_012164' => 'dca', 'DCAR_019764' => 'dca', 'Dinv05418' => 'din', 'Dinv10839' => 'din', 'Dinv12521' => 'din', 'Dinv13900' => 'din', 'Dinv29426' => 'din', 'Duzib150G0263' => 'dzi', 'Duzib168G1178' => 'dzi', 'Duzib168G1924' => 'dzi', 'Duzib170G0299' => 'dzi', 'Duzib170G0813' => 'dzi', 'Duzib235G1128' => 'dzi', 'Duzib248G1060' => 'dzi', 'ECA232G1910' => 'eca', 'ECA233G4621' => 'eca', 'ECA238G1216' => 'eca', 'ECA238G1784' => 'eca', 'ECA248G1242' => 'eca', 'EL10Ac8g20071' => 'bvu', 'EL10Ac9g21086' => 'bvu', 'EL10Ac9g22407' => 'bvu', 'EL10Ac9g22412' => 'bvu', 'Eucgr.A01119' => 'egr', 'Eucgr.E04043' => 'egr', 'Eucgr.J00428' => 'egr', 'Eucgr.J00958' => 'egr', 'FAN11G3091' => 'fan', 'FAN11G3651' => 'fan', 'FAN16G2566' => 'fan', 'FAN21G3155' => 'fan', 'FAN21G3400' => 'fan', 'FAN21G3543' => 'fan', 'FAN25G0234' => 'fan', 'FAN25G1422' => 'fan', 'FAN25G3392' => 'fan', 'FvH4_3g01940' => 'fve', 'FvH4_3g29870' => 'fve', 'FvH4_3g33680' => 'fve', 'Glyma.09G004200' => 'gma', 'Glyma.11G151288' => 'gma', 'Glyma.11G189100' => 'gma', 'Glyma.12G072500' => 'gma', 'Glyma.12G085500' => 'gma', 'Glyma.12G181800' => 'gma', 'Glyma.12G193000' => 'gma', 'Glyma.13G309300' => 'gma', 'Glyma.13G319000' => 'gma', 'Glyma.17G012600' => 'gma', 'Gohir.A06G148600' => 'ghi', 'Gohir.A07G115800' => 'ghi', 'Gohir.A08G003600' => 'ghi', 'Gohir.A09G093300' => 'ghi', 'Gohir.A09G105400' => 'ghi', 'Gohir.A09G105500' => 'ghi', 'Gohir.D06G154600' => 'ghi', 'Gohir.D07G120200' => 'ghi', 'Gohir.D08G013900' => 'ghi', 'Gohir.D09G093100' => 'ghi', 'Gohir.D09G102200' => 'ghi', 'Gohir.D09G102300' => 'ghi', 'Gorai.001G129400' => 'gra', 'Gorai.004G008200' => 'gra', 'Gorai.006G109800' => 'gra', 'Gorai.006G119500' => 'gra', 'Gorai.006G121300' => 'gra', 'Gorai.010G180700' => 'gra', 'GSVIVG01012716001' => 'vvi', 'GSVIVG01025118001' => 'vvi', 'GSVIVG01030439001' => 'vvi', 'GSVIVG01031397001' => 'vvi', 'HanXRQChr01g0004201' => 'han', 'HanXRQChr02g0054941' => 'han', 'HanXRQChr05g0141811' => 'han', 'HanXRQChr07g0197751' => 'han', 'HanXRQChr11g0346691' => 'han', 'HanXRQChr13g0396971' => 'han', 'HanXRQChr14g0432951' => 'han', 'HanXRQChr14g0452001' => 'han', 'HanXRQChr15g0496681' => 'han', 'HanXRQChr17g0557491' => 'han', 'HanXRQChr17g0557501' => 'han', 'Haze_06809' => 'cav', 'Haze_12852' => 'cav', 'Haze_15850' => 'cav', 'Haze_23446' => 'cav', 'Haze_23942' => 'cav', 'Haze_23943' => 'cav', 'Hma1.2p1_0091F.1_g046450' => 'hma', 'Hma1.2p1_0128F.1_g059910' => 'hma', 'Hma1.2p1_0249F.1_g102260' => 'hma', 'Hma1.2p1_0453F.1_g156190' => 'hma', 'Hma1.2p1_0695F.1_g204380' => 'hma', 'Hma1.2p1_0749F.1_g212650' => 'hma', 'Hma1.2p1_2156F.1_g315420' => 'hma', 'Hma1.2p1_2686F.1_g326940' => 'hma', 'HPP92_006428' => 'vpl', 'HPP92_012069' => 'vpl', 'HPP92_014129' => 'vpl', 'HPP92_014133' => 'vpl', 'HPP92_017315' => 'vpl', 'HPP92_026445' => 'vpl', 'HPP92_026446' => 'vpl', 'Hund00774' => 'sun', 'Hund07682' => 'sun', 'Hund21413' => 'sun', 'Hund23462' => 'sun', 'Hund23463' => 'sun', 'Lalb_Chr03g0027911' => 'lal', 'Lalb_Chr13g0304271' => 'lal', 'Lalb_Chr19g0137471' => 'lal', 'Lalb_Chr22g0350651' => 'lal', 'Lalb_Chr24g0395151' => 'lal', 'Lj1A1231T40' => 'lonja', 'Lj1A221T48' => 'lonja', 'Lj1C924T12' => 'lonja', 'Lj2C993G6' => 'lonja', 'Lj3g0005790' => 'lja', 'Lj3g0015432' => 'lja', 'Lj3g0017722' => 'lja', 'Lj3g0018497' => 'lja', 'Lj4g0025071' => 'lja', 'Lsat_1_v5_gn_1_129680' => 'lsa', 'Lsat_1_v5_gn_2_25321' => 'lsa', 'Lsat_1_v5_gn_2_95461' => 'lsa', 'Lsat_1_v5_gn_4_159620' => 'lsa', 'Lsat_1_v5_gn_6_41301' => 'lsa', 'Lsat_1_v5_gn_6_74660' => 'lsa', 'Lsat_1_v5_gn_7_11520' => 'lsa', 'Lsat_1_v5_gn_9_67680' => 'lsa', 'Manes.04G008300' => 'mes', 'Manes.04G008400' => 'mes', 'Manes.04G026500' => 'mes', 'Manes.10G135300' => 'mes', 'Manes.11G157300' => 'mes', 'Manes.12G074000' => 'mes', 'Manes.16G006200' => 'mes', 'Manes.17G026400' => 'mes', 'Mapoly0024s0086' => 'mpo', 'Mapoly0024s0087' => 'mpo', 'Mapoly0071s0057' => 'mpo', 'Mapoly0204s0012' => 'mpo', 'MBI04_g37681_MAGBIO' => 'mbi', 'MBI05_g17779_MAGBIO' => 'mbi', 'MBI12_g31184_MAGBIO' => 'mbi', 'MBI17_g11083_MAGBIO' => 'mbi', 'MBI18_g03883_MAGBIO' => 'mbi', 'MBI18_g28940_MAGBIO' => 'mbi', 'MCO01G690' => 'mco', 'MD03G1109900' => 'mdo', 'MD03G1134800' => 'mdo', 'MD05G1348000' => 'mdo', 'MD10G1322400' => 'mdo', 'MD11G1123300' => 'mdo', 'MD11G1157600' => 'mdo', 'Medtr2g084875' => 'mtr', 'Medtr2g088130' => 'mtr', 'Medtr4g055310' => 'mtr', 'Medtr4g061070' => 'mtr', 'Medtr4g132250' => 'mtr', 'MELO3C004795.2' => 'cme', 'MELO3C004797.2' => 'cme', 'MELO3C007396.2' => 'cme', 'MELO3C019277.2' => 'cme', 'MELO3C021449.2' => 'cme', 'MELO3C025736.2' => 'cme', 'Migut.D02175' => 'egut', 'Migut.H01573' => 'egut', 'Migut.M01327' => 'egut', 'Migut.N02513' => 'egut', 'MSTRG.14638' => 'ama', 'MSTRG.18632' => 'ama', 'MSTRG.7203' => 'ama', 'Nitab4.5_0000533g0140' => 'nta', 'Nitab4.5_0000888g0150' => 'nta', 'Nitab4.5_0001453g0040' => 'nta', 'Nitab4.5_0002827g0090' => 'nta', 'Nitab4.5_0003082g0040' => 'nta', 'Nitab4.5_0007799g0040' => 'nta', 'Nitab4.5_0008983g0010' => 'nta', 'Nitab4.5_0009017g0020' => 'nta', 'Nn1g02132' => 'nnu', 'Nn1g03492' => 'nnu', 'Nn1g03493' => 'nnu', 'Nn1g03494' => 'nnu', 'Nn1g07164' => 'nnu', 'Nn1g07291' => 'nnu', 'Nn2g10655' => 'nnu', 'Nn2g11652' => 'nnu', 'Nn2g14008' => 'nnu', 'Nn3g17476' => 'nnu', 'Nn3g17477' => 'nnu', 'Nn4g22370' => 'nnu', 'Nn4g25255' => 'nnu', 'Nn5g27755' => 'nnu', 'Nn6g34260' => 'nnu', 'Nn6g35041' => 'nnu', 'Oeu005924.1' => 'oeu', 'Oeu008383.1' => 'oeu', 'Oeu014928.1' => 'oeu', 'Oeu019889.1' => 'oeu', 'Oeu022271.1' => 'oeu', 'Oeu025271.1' => 'oeu', 'Oeu036302.1' => 'oeu', 'Oeu044100.1' => 'oeu', 'Os01g0528300' => 'osa', 'Os03g0286200' => 'osa', 'Os04g0406600' => 'osa', 'Os07g0512000' => 'osa', 'Os07g0694600' => 'osa', 'Os08g0411000' => 'osa', 'Os09g0565700' => 'osa', 'Os09g0566050' => 'osa', 'Os10g0523700' => 'osa', 'Peaxi162Scf00002g00514' => 'pax', 'Peaxi162Scf00047g01817' => 'pax', 'Peaxi162Scf00114g00001' => 'pax', 'Peaxi162Scf00147g00613' => 'pax', 'Peaxi162Scf00389g00425' => 'pax', 'PGR042G1139' => 'pgr', 'PGR042G3273' => 'pgr', 'PGR102G2180' => 'pgr', 'PGR119G0234' => 'pgr', 'PGR119G0668' => 'pgr', 'PGSC0003DMG400007122' => 'stu', 'PGSC0003DMG400016478' => 'stu', 'PGSC0003DMG400025374' => 'stu', 'PGSC0003DMG400026536' => 'stu', 'Phvul.003G079600' => 'pvu', 'Phvul.005G115600' => 'pvu', 'Phvul.005G127100' => 'pvu', 'Phvul.006G149500' => 'pvu', 'Phvul.006G149600' => 'pvu', 'Phvul.011G071800' => 'pvu', 'Phvul.011G090400' => 'pvu', 'Potri.004G013400' => 'ptr', 'Potri.004G188100' => 'ptr', 'Potri.008G195500' => 'ptr', 'Potri.009G148800' => 'ptr', 'Potri.011G004700' => 'ptr', 'Pp3c17_22810' => 'ppa', 'Pp3c18_4480' => 'ppa', 'Pp3c19_13030' => 'ppa', 'Pp3c1_33620' => 'ppa', 'Pp3c2_9380' => 'ppa', 'PRCOL_00001023' => 'pco', 'Prupe.3G216300' => 'ppe', 'Prupe.4G019500' => 'ppe', 'Prupe.6G092500' => 'ppe', 'Prupe.6G119200' => 'ppe', 'Psat0s1945g0080' => 'psa', 'Psat0s4167g0040' => 'psa', 'Psat1g185800' => 'psa', 'Psat4g006440' => 'psa', 'Psat4g006480' => 'psa', 'Psat4g168120' => 'psa', 'Psat5g255680' => 'psa', 'Psat5g261760' => 'psa', 'Psat7g222120' => 'psa', 'PSO063G7252' => 'pso', 'PSO170G4778' => 'pso', 'PSO210G2249' => 'pso', 'PSO339G2411' => 'pso', 'PSO339G2457' => 'pso', 'PSO339G2854' => 'pso', 'PSO339G4288' => 'pso', 'PSO339G4615' => 'pso', 'PSO384G2796' => 'pso', 'PSO384G2940' => 'pso', 'PSO384G4227' => 'pso', 'PSO478G1425' => 'pso', 'PSO541G3863' => 'pso', 'PSO675G0507' => 'pso', 'PSO782G0338' => 'pso', 'PSO832G0644' => 'pso', 'QL01p013664' => 'qlo', 'QL01p036598' => 'qlo', 'QL05p072984' => 'qlo', 'QL08p005768' => 'qlo', 'QL08p032743' => 'qlo', 'QL93p0073_0439' => 'qlo', 'QL93p0073_0444' => 'qlo', 'RcHm_v2.0_Chr5g0002851' => 'rch', 'RcHm_v2.0_Chr5g0055201' => 'rch', 'RcHm_v2.0_Chr5g0061191' => 'rch', 'RcHm_v2.0_Chr7g0203231' => 'rch', 'Rhsim01G0208100' => 'rsi', 'Rhsim01G0208200' => 'rsi', 'Rhsim02G0106500' => 'rsi', 'Rhsim03G0107900' => 'rsi', 'Rhsim06G0163400' => 'rsi', 'Rhsim13G0105200' => 'rsi', 'Sabra04G0006300' => 'sbr', 'Sabra04G0127000' => 'sbr', 'Sabra08G0148700' => 'sbr', 'Sabra09G0117400' => 'sbr', 'SalBow1G3326' => 'sbo', 'SalBow3G3228' => 'sbo', 'SalBow6G1634' => 'sbo', 'SalBow6G3603' => 'sbo', 'SalBow6G5266' => 'sbo', 'SalBow7G2265' => 'sbo', 'SalBow8G0850' => 'sbo', 'SalBow8G2592' => 'sbo', 'Sc05g0009240' => 'sci', 'Sc12g0002300' => 'sci', 'Sc21g0000100' => 'sci', 'Sc21g0004720' => 'sci', 'Sed0002949' => 'sed', 'Sed0004114' => 'sed', 'Sed0004306' => 'sed', 'Sed0006172' => 'sed', 'Sed0008413' => 'sed', 'Sed0013809' => 'sed', 'Sed0019556' => 'sed', 'SEGI_03570' => 'sgi', 'SEGI_07859' => 'sgi', 'SEGI_15042' => 'sgi', 'SEGI_16263' => 'sgi', 'SEGI_16552' => 'sgi', 'SEGI_24331' => 'sgi', 'SEGI_27316' => 'sgi', 'SEGI_29521' => 'sgi', 'SEGI_41342' => 'sgi', 'SGA_v2.0_scaffold27G11617' => 'sas', 'SGA_v2.0_scaffold316G48428' => 'sas', 'SGA_v2.0_scaffold49G18261' => 'sas', 'SGA_v2.0_scaffold7G03831' => 'sas', 'SGA_v2.0_scaffold93G28359' => 'sas', 'SHI02210' => 'shi', 'SHI06028' => 'shi', 'SHI06321' => 'shi', 'SMO111G0012' => 'smo', 'SMO228G0080' => 'smo', 'SMO356G0756' => 'smo', 'Solyc02g080620.3' => 'sly', 'Solyc06g074530.1' => 'sly', 'Solyc11g066890.1' => 'sly', 'Solyc11g072520.3' => 'sly', 'Sopen02g025330' => 'spe', 'Sopen06g031000' => 'spe', 'Sopen09g008240' => 'spe', 'Sopen09g025210' => 'spe', 'Sopen11g026600' => 'spe', 'Sopen11g030170' => 'spe', 'Sp1g10420' => 'spa', 'Sp3g06570' => 'spa', 'Sp4g10660' => 'spa', 'Sp5g16460' => 'spa', 'Sp6g22710' => 'spa', 'TAR365G0112' => 'tar', 'TAR369G0717' => 'tar', 'TAR374G0976' => 'tar', 'TAR623G1128' => 'tar', 'TAR626G1937' => 'tar', 'TAR627G0123' => 'tar', 'TAR628G0305' => 'tar', 'TAR636G1176' => 'tar', 'TAR636G2442' => 'tar', 'THA.LOC104800556' => 'tha', 'THA.LOC104809501' => 'tha', 'THA.LOC104815126' => 'tha', 'THA.LOC104815732' => 'tha', 'THA.LOC104823528' => 'tha', 'Thecc.02G365600' => 'tca', 'Thecc.06G222300' => 'tca', 'Thecc.09G261800' => 'tca', 'Thecc.09G291400' => 'tca', 'Thhalv10003028m.g' => 'esa', 'Thhalv10007886m.g' => 'esa', 'Thhalv10016085m.g' => 'esa', 'Thhalv10016681m.g' => 'esa', 'Thhalv10020951m.g' => 'esa', 'TPR.G15598' => 'tpr', 'TPR.G29305' => 'tpr', 'TPR.G32395' => 'tpr', 'TPR.G36998' => 'tpr', 'TPR.G4227' => 'tpr', 'TWI18G1433' => 'twi', 'TWI31G0755' => 'twi', 'TWI38G0912' => 'twi', 'TWI75G1097' => 'twi', 'TWI75G1619' => 'twi', 'TWI79G1336' => 'twi', 'unitig_0.g943' => 'ugi', 'unitig_0.g944' => 'ugi', 'unitig_22.g6646' => 'ugi', 'unitig_37.g12681' => 'ugi', 'unitig_8.g3290' => 'ugi', 'vmacro03278' => 'vma', 'vmacro12197' => 'vma', 'vmacro14478' => 'vma', 'vmacro15787' => 'vma', 'vmacro15789' => 'vma', 'vmacro15790' => 'vma', 'vmacro15806' => 'vma', 'vmacro22907' => 'vma', 'vmacro22908' => 'vma', 'vmacro22909' => 'vma', 'vmacro23108' => 'vma', 'VMungo0540G0540' => 'vmu', 'VMungo0540G2468' => 'vmu', 'VMungo1080G0390' => 'vmu', 'VMungo1080G1165' => 'vmu', 'VMungo1127G0170' => 'vmu', 'VMungo1127G2099' => 'vmu', 'VMungo1215G3013' => 'vmu', 'Zm00001eb013110' => 'zma', 'Zm00001eb084260' => 'zma', 'Zm00001eb096110' => 'zma', 'Zm00001eb217510' => 'zma', 'Zm00001eb322550' => 'zma', 'Zm00001eb390770' => 'zma', 'Zm00001eb397170' => 'zma', 'Zm00001eb404610' => 'zma', 'Zm00001eb421790' => 'zma' ) $gf_id = 'HOM05D000911' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000911' ) $data_identifier = 'HOM05D000911' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 16, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 5, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 6, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 8, 'nnu' => (int) 16, 'oeu' => (int) 8, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 5, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 16, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421790' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000911', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27780' => 'bna', 'A03p35380' => 'bna', 'A04p21160' => 'bna', 'A05p40570' => 'bna', 'A06p26900' => 'bna', 'A08p33230' => 'bna', 'A09p65960' => 'bna', 'A10p18290' => 'bna', 'Aa31LG1G12990' => 'aar', 'Aa31LG1G2980' => 'aar', 'Aa31LG4G14320' => 'aar', 'Aa31LG7G11800' => 'aar', 'Aa31sc36G50' => 'aar', 'Aa31sc36G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3721' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5459' => 'aag', 'Actinidia03028' => 'ach', 'Actinidia03753' => 'ach', 'Actinidia04187' => 'ach', 'Actinidia05509' => 'ach', 'Actinidia24180' => 'ach', 'Actinidia26906' => 'ach', 'Actinidia37097' => 'ach', 'Actinidia38249' => 'ach', 'Ah.01g003470' => 'amhyb', 'Ah.01g004580' => 'amhyb', 'Ah.01g014850' => 'amhyb', 'Ah.01g016830' => 'amhyb', 'Ah.14g088000' => 'amhyb', 'AL1G22980' => 'aly', 'AL3G18990' => 'aly', 'AL4G22440' => 'aly', 'AL4G33180' => 'aly', 'AL5G22920' => 'aly', 'AL6G33660' => 'aly', 'AL8G20720' => 'aly', 'Aqoxy1G00935' => 'aox', 'Aqoxy1G02094' => 'aox', 'Aqoxy2G01239' => 'aox', 'Aqoxy4G01870' => 'aox', 'Aqoxy7G00450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.36ZVTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71EM27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5D6C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH3WRE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3NCM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RIM768' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YB5YRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z36GDV' => 'arhy', 'AT1G08250' => 'ath', 'AT1G11790' => 'ath', 'AT2G27820' => 'ath', 'AT3G07630' => 'ath', 'AT3G44720' => 'ath', 'AT5G22630' => 'ath', 'ATR0693G304' => 'atr', 'ATR0794G109' => 'atr', 'ATR0820G120' => 'atr', 'ATR1159G064' => 'atr', 'Atru.chr10.2239' => 'acertr', 'Atru.chr3.3371' => 'acertr', 'Atru.chr6.3202' => 'acertr', 'AUR62006499' => 'cqu', 'AUR62012718' => 'cqu', 'AUR62021938' => 'cqu', 'AUR62023932' => 'cqu', 'AUR62025034' => 'cqu', 'AUR62025035' => 'cqu', 'AUR62038307' => 'cqu', 'AUR62043466' => 'cqu', 'BcaB02g10748' => 'bca', 'BcaB03g13231' => 'bca', 'BcaB03g14689' => 'bca', 'BcaB05g22716' => 'bca', 'BcaB06g28172' => 'bca', 'BcaB08g36413' => 'bca', 'BcaC01g02186' => 'bca', 'BcaC01g04272' => 'bca', 'BcaC02g08080' => 'bca', 'BcaC02g08227' => 'bca', 'BcaC03g13901' => 'bca', 'BcaC04g19593' => 'bca', 'BcaC04g20874' => 'bca', 'BcaC05g29557' => 'bca', 'BcaC06g35505' => 'bca', 'BcaC07g41954' => 'bca', 'BcaC07g41955' => 'bca', 'BcaC07g41956' => 'bca', 'BcaC07g42519' => 'bca', 'BcaC07g42520' => 'bca', 'BcaC07g42523' => 'bca', 'BcaC07g42524' => 'bca', 'BcaC07g42525' => 'bca', 'BcaC08g47480' => 'bca', 'BcaC08g47481' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00530' => 'bna', 'BolC2t07178H' => 'bol', 'BolC3t16567H' => 'bol', 'BolC4t27234H' => 'bol', 'BolC5t29728H' => 'bol', 'BolC5t34622H' => 'bol', 'BolC6t40321H' => 'bol', 'BolC7t42028H' => 'bol', 'BolC8t49125H' => 'bol', 'BolC8t52538H' => 'bol', 'BolC8t52539H' => 'bol', 'BolC9t56681H' => 'bol', 'BolC9t58266H' => 'bol', 'BolSC21t60294H' => 'bol', 'BraA02t05670Z' => 'bra', 'BraA03t12716Z' => 'bra', 'BraA04t17685Z' => 'bra', 'BraA05t22788Z' => 'bra', 'BraA06t24032Z' => 'bra', 'BraA06t25625Z' => 'bra', 'BraA07t27930Z' => 'bra', 'BraA08t35242Z' => 'bra', 'BraA09t38609Z' => 'bra', 'BraA10t43905Z' => 'bra', 'C02p11060' => 'bna', 'C03p42990' => 'bna', 'C03p67310' => 'bna', 'C04p56990' => 'bna', 'C04p58660' => 'bna', 'C05p09890' => 'bna', 'C05p59680' => 'bna', 'C06p19830' => 'bna', 'C06p53040' => 'bna', 'C07p15230' => 'bna', 'C08p50070' => 'bna', 'C08p50090' => 'bna', 'C09p38330' => 'bna', 'C09p53940' => 'bna', 'CAN.G1014.1' => 'can', 'CAN.G644.30' => 'can', 'CAN.G84.47' => 'can', 'CAN.G919.8' => 'can', 'CANSAT54G0113' => 'cansat', 'CANSAT54G1286' => 'cansat', 'CANSAT64G1020' => 'cansat', 'CARHR008080' => 'chi', 'CARHR008090' => 'chi', 'CARHR012130' => 'chi', 'CARHR038390' => 'chi', 'CARHR082330' => 'chi', 'CARHR120520' => 'chi', 'CARHR151470' => 'chi', 'CARHR190950' => 'chi', 'Carub.0001s0760' => 'cru', 'Carub.0001s1146' => 'cru', 'Carub.0003s0721' => 'cru', 'Carub.0004s0858' => 'cru', 'Carub.0005s1040' => 'cru', 'Carub.0006s2035' => 'cru', 'Carub.0015s0005' => 'cru', 'Ca_01607_v3' => 'car', 'Ca_01677_v3' => 'car', 'Ca_06087_v3' => 'car', 'Ca_19238_v3' => 'car', 'Ca_19373_v3' => 'car', 'Ca_21079_v3' => 'car', 'CBR_g54016' => 'cbr', 'CBR_g54018' => 'cbr', 'CBR_g54020' => 'cbr', 'Cc01_g09780' => 'ccan', 'Cc01_g11680' => 'ccan', 'Cc02_g15610' => 'ccan', 'Cc05_g04350' => 'ccan', 'Cc09_g01580' => 'ccan', 'CDE01G0795' => 'cde', 'CDE02G2024' => 'cde', 'CDE02G2260' => 'cde', 'CDE02G4561' => 'cde', 'CDE05G2733' => 'cde', 'CDE05G3422' => 'cde', 'CDE06G2003' => 'cde', 'CDE08G0576' => 'cde', 'CDE09G0048' => 'cde', 'CDE11G0805' => 'cde', 'Cfa003644' => 'cfa', 'Cfa006290' => 'cfa', 'Cfa010080' => 'cfa', 'Cfa011376' => 'cfa', 'Cfa011576' => 'cfa', 'Cfa011577' => 'cfa', 'Cfa014389' => 'cfa', 'Ciclev10006044m.g' => 'ccl', 'Ciclev10006954m.g' => 'ccl', 'Ciclev10015131m.g' => 'ccl', 'Ciclev10015580m.g' => 'ccl', 'Ciclev10028359m.g' => 'ccl', 'Ciclev10028573m.g' => 'ccl', 'CiPaw.03G159300' => 'cil', 'CiPaw.04G115100' => 'cil', 'CiPaw.09G092800' => 'cil', 'CiPaw.10G071800' => 'cil', 'CiPaw.13G105800' => 'cil', 'CiPaw.13G141000' => 'cil', 'CiPaw.14G103400' => 'cil', 'ClCG01G012700' => 'cla', 'ClCG01G012720' => 'cla', 'ClCG01G021920' => 'cla', 'ClCG02G008870' => 'cla', 'ClCG02G020840' => 'cla', 'ClCG02G021930' => 'cla', 'COL.COLO4_19302' => 'col', 'COL.COLO4_25262' => 'col', 'COL.COLO4_31788' => 'col', 'Cpa.g.c34684' => 'cpa', 'Cpa.g.c36520.1' => 'cpa', 'Cpa.g.c45626' => 'cpa', 'Cpa.g.sc121.17' => 'cpa', 'Cpa.g.sc13.22' => 'cpa', 'Cpa.g.sc87.88' => 'cpa', 'Cre06.g261800' => 'cre', 'CsaV3_1G014500' => 'csa', 'CsaV3_1G014510' => 'csa', 'CsaV3_2G034880' => 'csa', 'CsaV3_6G014760' => 'csa', 'CsaV3_6G021500' => 'csa', 'CsaV3_6G048980' => 'csa', 'CSS0002511' => 'camsi', 'CSS0007556' => 'camsi', 'CSS0008532' => 'camsi', 'CSS0009709' => 'camsi', 'CSS0010486' => 'camsi', 'CSS0016768' => 'camsi', 'CSS0023512' => 'camsi', 'CSS0025341' => 'camsi', 'CSS0027999' => 'camsi', 'CSS0028944' => 'camsi', 'CSS0032292' => 'camsi', 'CSS0032464' => 'camsi', 'CSS0037153' => 'camsi', 'CSS0039256' => 'camsi', 'CSS0048392' => 'camsi', 'CSS0050458' => 'camsi', 'DCAR_004224' => 'dca', 'DCAR_006147' => 'dca', 'DCAR_006465' => 'dca', 'DCAR_008159' => 'dca', 'DCAR_012164' => 'dca', 'DCAR_019764' => 'dca', 'Dinv05418' => 'din', 'Dinv10839' => 'din', 'Dinv12521' => 'din', 'Dinv13900' => 'din', 'Dinv29426' => 'din', 'Duzib150G0263' => 'dzi', 'Duzib168G1178' => 'dzi', 'Duzib168G1924' => 'dzi', 'Duzib170G0299' => 'dzi', 'Duzib170G0813' => 'dzi', 'Duzib235G1128' => 'dzi', 'Duzib248G1060' => 'dzi', 'ECA232G1910' => 'eca', 'ECA233G4621' => 'eca', 'ECA238G1216' => 'eca', 'ECA238G1784' => 'eca', 'ECA248G1242' => 'eca', 'EL10Ac8g20071' => 'bvu', 'EL10Ac9g21086' => 'bvu', 'EL10Ac9g22407' => 'bvu', 'EL10Ac9g22412' => 'bvu', 'Eucgr.A01119' => 'egr', 'Eucgr.E04043' => 'egr', 'Eucgr.J00428' => 'egr', 'Eucgr.J00958' => 'egr', 'FAN11G3091' => 'fan', 'FAN11G3651' => 'fan', 'FAN16G2566' => 'fan', 'FAN21G3155' => 'fan', 'FAN21G3400' => 'fan', 'FAN21G3543' => 'fan', 'FAN25G0234' => 'fan', 'FAN25G1422' => 'fan', 'FAN25G3392' => 'fan', 'FvH4_3g01940' => 'fve', 'FvH4_3g29870' => 'fve', 'FvH4_3g33680' => 'fve', 'Glyma.09G004200' => 'gma', 'Glyma.11G151288' => 'gma', 'Glyma.11G189100' => 'gma', 'Glyma.12G072500' => 'gma', 'Glyma.12G085500' => 'gma', 'Glyma.12G181800' => 'gma', 'Glyma.12G193000' => 'gma', 'Glyma.13G309300' => 'gma', 'Glyma.13G319000' => 'gma', 'Glyma.17G012600' => 'gma', 'Gohir.A06G148600' => 'ghi', 'Gohir.A07G115800' => 'ghi', 'Gohir.A08G003600' => 'ghi', 'Gohir.A09G093300' => 'ghi', 'Gohir.A09G105400' => 'ghi', 'Gohir.A09G105500' => 'ghi', 'Gohir.D06G154600' => 'ghi', 'Gohir.D07G120200' => 'ghi', 'Gohir.D08G013900' => 'ghi', 'Gohir.D09G093100' => 'ghi', 'Gohir.D09G102200' => 'ghi', 'Gohir.D09G102300' => 'ghi', 'Gorai.001G129400' => 'gra', 'Gorai.004G008200' => 'gra', 'Gorai.006G109800' => 'gra', 'Gorai.006G119500' => 'gra', 'Gorai.006G121300' => 'gra', 'Gorai.010G180700' => 'gra', 'GSVIVG01012716001' => 'vvi', 'GSVIVG01025118001' => 'vvi', 'GSVIVG01030439001' => 'vvi', 'GSVIVG01031397001' => 'vvi', 'HanXRQChr01g0004201' => 'han', 'HanXRQChr02g0054941' => 'han', 'HanXRQChr05g0141811' => 'han', 'HanXRQChr07g0197751' => 'han', 'HanXRQChr11g0346691' => 'han', 'HanXRQChr13g0396971' => 'han', 'HanXRQChr14g0432951' => 'han', 'HanXRQChr14g0452001' => 'han', 'HanXRQChr15g0496681' => 'han', 'HanXRQChr17g0557491' => 'han', 'HanXRQChr17g0557501' => 'han', 'Haze_06809' => 'cav', 'Haze_12852' => 'cav', 'Haze_15850' => 'cav', 'Haze_23446' => 'cav', 'Haze_23942' => 'cav', 'Haze_23943' => 'cav', 'Hma1.2p1_0091F.1_g046450' => 'hma', 'Hma1.2p1_0128F.1_g059910' => 'hma', 'Hma1.2p1_0249F.1_g102260' => 'hma', 'Hma1.2p1_0453F.1_g156190' => 'hma', 'Hma1.2p1_0695F.1_g204380' => 'hma', 'Hma1.2p1_0749F.1_g212650' => 'hma', 'Hma1.2p1_2156F.1_g315420' => 'hma', 'Hma1.2p1_2686F.1_g326940' => 'hma', 'HPP92_006428' => 'vpl', 'HPP92_012069' => 'vpl', 'HPP92_014129' => 'vpl', 'HPP92_014133' => 'vpl', 'HPP92_017315' => 'vpl', 'HPP92_026445' => 'vpl', 'HPP92_026446' => 'vpl', 'Hund00774' => 'sun', 'Hund07682' => 'sun', 'Hund21413' => 'sun', 'Hund23462' => 'sun', 'Hund23463' => 'sun', 'Lalb_Chr03g0027911' => 'lal', 'Lalb_Chr13g0304271' => 'lal', 'Lalb_Chr19g0137471' => 'lal', 'Lalb_Chr22g0350651' => 'lal', 'Lalb_Chr24g0395151' => 'lal', 'Lj1A1231T40' => 'lonja', 'Lj1A221T48' => 'lonja', 'Lj1C924T12' => 'lonja', 'Lj2C993G6' => 'lonja', 'Lj3g0005790' => 'lja', 'Lj3g0015432' => 'lja', 'Lj3g0017722' => 'lja', 'Lj3g0018497' => 'lja', 'Lj4g0025071' => 'lja', 'Lsat_1_v5_gn_1_129680' => 'lsa', 'Lsat_1_v5_gn_2_25321' => 'lsa', 'Lsat_1_v5_gn_2_95461' => 'lsa', 'Lsat_1_v5_gn_4_159620' => 'lsa', 'Lsat_1_v5_gn_6_41301' => 'lsa', 'Lsat_1_v5_gn_6_74660' => 'lsa', 'Lsat_1_v5_gn_7_11520' => 'lsa', 'Lsat_1_v5_gn_9_67680' => 'lsa', 'Manes.04G008300' => 'mes', 'Manes.04G008400' => 'mes', 'Manes.04G026500' => 'mes', 'Manes.10G135300' => 'mes', 'Manes.11G157300' => 'mes', 'Manes.12G074000' => 'mes', 'Manes.16G006200' => 'mes', 'Manes.17G026400' => 'mes', 'Mapoly0024s0086' => 'mpo', 'Mapoly0024s0087' => 'mpo', 'Mapoly0071s0057' => 'mpo', 'Mapoly0204s0012' => 'mpo', 'MBI04_g37681_MAGBIO' => 'mbi', 'MBI05_g17779_MAGBIO' => 'mbi', 'MBI12_g31184_MAGBIO' => 'mbi', 'MBI17_g11083_MAGBIO' => 'mbi', 'MBI18_g03883_MAGBIO' => 'mbi', 'MBI18_g28940_MAGBIO' => 'mbi', 'MCO01G690' => 'mco', 'MD03G1109900' => 'mdo', 'MD03G1134800' => 'mdo', 'MD05G1348000' => 'mdo', 'MD10G1322400' => 'mdo', 'MD11G1123300' => 'mdo', 'MD11G1157600' => 'mdo', 'Medtr2g084875' => 'mtr', 'Medtr2g088130' => 'mtr', 'Medtr4g055310' => 'mtr', 'Medtr4g061070' => 'mtr', 'Medtr4g132250' => 'mtr', 'MELO3C004795.2' => 'cme', 'MELO3C004797.2' => 'cme', 'MELO3C007396.2' => 'cme', 'MELO3C019277.2' => 'cme', 'MELO3C021449.2' => 'cme', 'MELO3C025736.2' => 'cme', 'Migut.D02175' => 'egut', 'Migut.H01573' => 'egut', 'Migut.M01327' => 'egut', 'Migut.N02513' => 'egut', 'MSTRG.14638' => 'ama', 'MSTRG.18632' => 'ama', 'MSTRG.7203' => 'ama', 'Nitab4.5_0000533g0140' => 'nta', 'Nitab4.5_0000888g0150' => 'nta', 'Nitab4.5_0001453g0040' => 'nta', 'Nitab4.5_0002827g0090' => 'nta', 'Nitab4.5_0003082g0040' => 'nta', 'Nitab4.5_0007799g0040' => 'nta', 'Nitab4.5_0008983g0010' => 'nta', 'Nitab4.5_0009017g0020' => 'nta', 'Nn1g02132' => 'nnu', 'Nn1g03492' => 'nnu', 'Nn1g03493' => 'nnu', 'Nn1g03494' => 'nnu', 'Nn1g07164' => 'nnu', 'Nn1g07291' => 'nnu', 'Nn2g10655' => 'nnu', 'Nn2g11652' => 'nnu', 'Nn2g14008' => 'nnu', 'Nn3g17476' => 'nnu', 'Nn3g17477' => 'nnu', 'Nn4g22370' => 'nnu', 'Nn4g25255' => 'nnu', 'Nn5g27755' => 'nnu', 'Nn6g34260' => 'nnu', 'Nn6g35041' => 'nnu', 'Oeu005924.1' => 'oeu', 'Oeu008383.1' => 'oeu', 'Oeu014928.1' => 'oeu', 'Oeu019889.1' => 'oeu', 'Oeu022271.1' => 'oeu', 'Oeu025271.1' => 'oeu', 'Oeu036302.1' => 'oeu', 'Oeu044100.1' => 'oeu', 'Os01g0528300' => 'osa', 'Os03g0286200' => 'osa', 'Os04g0406600' => 'osa', 'Os07g0512000' => 'osa', 'Os07g0694600' => 'osa', 'Os08g0411000' => 'osa', 'Os09g0565700' => 'osa', 'Os09g0566050' => 'osa', 'Os10g0523700' => 'osa', 'Peaxi162Scf00002g00514' => 'pax', 'Peaxi162Scf00047g01817' => 'pax', 'Peaxi162Scf00114g00001' => 'pax', 'Peaxi162Scf00147g00613' => 'pax', 'Peaxi162Scf00389g00425' => 'pax', 'PGR042G1139' => 'pgr', 'PGR042G3273' => 'pgr', 'PGR102G2180' => 'pgr', 'PGR119G0234' => 'pgr', 'PGR119G0668' => 'pgr', 'PGSC0003DMG400007122' => 'stu', 'PGSC0003DMG400016478' => 'stu', 'PGSC0003DMG400025374' => 'stu', 'PGSC0003DMG400026536' => 'stu', 'Phvul.003G079600' => 'pvu', 'Phvul.005G115600' => 'pvu', 'Phvul.005G127100' => 'pvu', 'Phvul.006G149500' => 'pvu', 'Phvul.006G149600' => 'pvu', 'Phvul.011G071800' => 'pvu', 'Phvul.011G090400' => 'pvu', 'Potri.004G013400' => 'ptr', 'Potri.004G188100' => 'ptr', 'Potri.008G195500' => 'ptr', 'Potri.009G148800' => 'ptr', 'Potri.011G004700' => 'ptr', 'Pp3c17_22810' => 'ppa', 'Pp3c18_4480' => 'ppa', 'Pp3c19_13030' => 'ppa', 'Pp3c1_33620' => 'ppa', 'Pp3c2_9380' => 'ppa', 'PRCOL_00001023' => 'pco', 'Prupe.3G216300' => 'ppe', 'Prupe.4G019500' => 'ppe', 'Prupe.6G092500' => 'ppe', 'Prupe.6G119200' => 'ppe', 'Psat0s1945g0080' => 'psa', 'Psat0s4167g0040' => 'psa', 'Psat1g185800' => 'psa', 'Psat4g006440' => 'psa', 'Psat4g006480' => 'psa', 'Psat4g168120' => 'psa', 'Psat5g255680' => 'psa', 'Psat5g261760' => 'psa', 'Psat7g222120' => 'psa', 'PSO063G7252' => 'pso', 'PSO170G4778' => 'pso', 'PSO210G2249' => 'pso', 'PSO339G2411' => 'pso', 'PSO339G2457' => 'pso', 'PSO339G2854' => 'pso', 'PSO339G4288' => 'pso', 'PSO339G4615' => 'pso', 'PSO384G2796' => 'pso', 'PSO384G2940' => 'pso', 'PSO384G4227' => 'pso', 'PSO478G1425' => 'pso', 'PSO541G3863' => 'pso', 'PSO675G0507' => 'pso', 'PSO782G0338' => 'pso', 'PSO832G0644' => 'pso', 'QL01p013664' => 'qlo', 'QL01p036598' => 'qlo', 'QL05p072984' => 'qlo', 'QL08p005768' => 'qlo', 'QL08p032743' => 'qlo', 'QL93p0073_0439' => 'qlo', 'QL93p0073_0444' => 'qlo', 'RcHm_v2.0_Chr5g0002851' => 'rch', 'RcHm_v2.0_Chr5g0055201' => 'rch', 'RcHm_v2.0_Chr5g0061191' => 'rch', 'RcHm_v2.0_Chr7g0203231' => 'rch', 'Rhsim01G0208100' => 'rsi', 'Rhsim01G0208200' => 'rsi', 'Rhsim02G0106500' => 'rsi', 'Rhsim03G0107900' => 'rsi', 'Rhsim06G0163400' => 'rsi', 'Rhsim13G0105200' => 'rsi', 'Sabra04G0006300' => 'sbr', 'Sabra04G0127000' => 'sbr', 'Sabra08G0148700' => 'sbr', 'Sabra09G0117400' => 'sbr', 'SalBow1G3326' => 'sbo', 'SalBow3G3228' => 'sbo', 'SalBow6G1634' => 'sbo', 'SalBow6G3603' => 'sbo', 'SalBow6G5266' => 'sbo', 'SalBow7G2265' => 'sbo', 'SalBow8G0850' => 'sbo', 'SalBow8G2592' => 'sbo', 'Sc05g0009240' => 'sci', 'Sc12g0002300' => 'sci', 'Sc21g0000100' => 'sci', 'Sc21g0004720' => 'sci', 'Sed0002949' => 'sed', 'Sed0004114' => 'sed', 'Sed0004306' => 'sed', 'Sed0006172' => 'sed', 'Sed0008413' => 'sed', 'Sed0013809' => 'sed', 'Sed0019556' => 'sed', 'SEGI_03570' => 'sgi', 'SEGI_07859' => 'sgi', 'SEGI_15042' => 'sgi', 'SEGI_16263' => 'sgi', 'SEGI_16552' => 'sgi', 'SEGI_24331' => 'sgi', 'SEGI_27316' => 'sgi', 'SEGI_29521' => 'sgi', 'SEGI_41342' => 'sgi', 'SGA_v2.0_scaffold27G11617' => 'sas', 'SGA_v2.0_scaffold316G48428' => 'sas', 'SGA_v2.0_scaffold49G18261' => 'sas', 'SGA_v2.0_scaffold7G03831' => 'sas', 'SGA_v2.0_scaffold93G28359' => 'sas', 'SHI02210' => 'shi', 'SHI06028' => 'shi', 'SHI06321' => 'shi', 'SMO111G0012' => 'smo', 'SMO228G0080' => 'smo', 'SMO356G0756' => 'smo', 'Solyc02g080620.3' => 'sly', 'Solyc06g074530.1' => 'sly', 'Solyc11g066890.1' => 'sly', 'Solyc11g072520.3' => 'sly', 'Sopen02g025330' => 'spe', 'Sopen06g031000' => 'spe', 'Sopen09g008240' => 'spe', 'Sopen09g025210' => 'spe', 'Sopen11g026600' => 'spe', 'Sopen11g030170' => 'spe', 'Sp1g10420' => 'spa', 'Sp3g06570' => 'spa', 'Sp4g10660' => 'spa', 'Sp5g16460' => 'spa', 'Sp6g22710' => 'spa', 'TAR365G0112' => 'tar', 'TAR369G0717' => 'tar', 'TAR374G0976' => 'tar', 'TAR623G1128' => 'tar', 'TAR626G1937' => 'tar', 'TAR627G0123' => 'tar', 'TAR628G0305' => 'tar', 'TAR636G1176' => 'tar', 'TAR636G2442' => 'tar', 'THA.LOC104800556' => 'tha', 'THA.LOC104809501' => 'tha', 'THA.LOC104815126' => 'tha', 'THA.LOC104815732' => 'tha', 'THA.LOC104823528' => 'tha', 'Thecc.02G365600' => 'tca', 'Thecc.06G222300' => 'tca', 'Thecc.09G261800' => 'tca', 'Thecc.09G291400' => 'tca', 'Thhalv10003028m.g' => 'esa', 'Thhalv10007886m.g' => 'esa', 'Thhalv10016085m.g' => 'esa', 'Thhalv10016681m.g' => 'esa', 'Thhalv10020951m.g' => 'esa', 'TPR.G15598' => 'tpr', 'TPR.G29305' => 'tpr', 'TPR.G32395' => 'tpr', 'TPR.G36998' => 'tpr', 'TPR.G4227' => 'tpr', 'TWI18G1433' => 'twi', 'TWI31G0755' => 'twi', 'TWI38G0912' => 'twi', 'TWI75G1097' => 'twi', 'TWI75G1619' => 'twi', 'TWI79G1336' => 'twi', 'unitig_0.g943' => 'ugi', 'unitig_0.g944' => 'ugi', 'unitig_22.g6646' => 'ugi', 'unitig_37.g12681' => 'ugi', 'unitig_8.g3290' => 'ugi', 'vmacro03278' => 'vma', 'vmacro12197' => 'vma', 'vmacro14478' => 'vma', 'vmacro15787' => 'vma', 'vmacro15789' => 'vma', 'vmacro15790' => 'vma', 'vmacro15806' => 'vma', 'vmacro22907' => 'vma', 'vmacro22908' => 'vma', 'vmacro22909' => 'vma', 'vmacro23108' => 'vma', 'VMungo0540G0540' => 'vmu', 'VMungo0540G2468' => 'vmu', 'VMungo1080G0390' => 'vmu', 'VMungo1080G1165' => 'vmu', 'VMungo1127G0170' => 'vmu', 'VMungo1127G2099' => 'vmu', 'VMungo1215G3013' => 'vmu', 'Zm00001eb013110' => 'zma', 'Zm00001eb084260' => 'zma', 'Zm00001eb096110' => 'zma', 'Zm00001eb217510' => 'zma', 'Zm00001eb322550' => 'zma', 'Zm00001eb390770' => 'zma', 'Zm00001eb397170' => 'zma', 'Zm00001eb404610' => 'zma', 'Zm00001eb421790' => 'zma' ), 'gf_id' => 'HOM05D000911', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000911' ), 'data_identifier' => 'HOM05D000911', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000911', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27780' => 'bna', 'A03p35380' => 'bna', 'A04p21160' => 'bna', 'A05p40570' => 'bna', 'A06p26900' => 'bna', 'A08p33230' => 'bna', 'A09p65960' => 'bna', 'A10p18290' => 'bna', 'Aa31LG1G12990' => 'aar', 'Aa31LG1G2980' => 'aar', 'Aa31LG4G14320' => 'aar', 'Aa31LG7G11800' => 'aar', 'Aa31sc36G50' => 'aar', 'Aa31sc36G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3721' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5459' => 'aag', 'Actinidia03028' => 'ach', 'Actinidia03753' => 'ach', 'Actinidia04187' => 'ach', 'Actinidia05509' => 'ach', 'Actinidia24180' => 'ach', 'Actinidia26906' => 'ach', 'Actinidia37097' => 'ach', 'Actinidia38249' => 'ach', 'Ah.01g003470' => 'amhyb', 'Ah.01g004580' => 'amhyb', 'Ah.01g014850' => 'amhyb', 'Ah.01g016830' => 'amhyb', 'Ah.14g088000' => 'amhyb', 'AL1G22980' => 'aly', 'AL3G18990' => 'aly', 'AL4G22440' => 'aly', 'AL4G33180' => 'aly', 'AL5G22920' => 'aly', 'AL6G33660' => 'aly', 'AL8G20720' => 'aly', 'Aqoxy1G00935' => 'aox', 'Aqoxy1G02094' => 'aox', 'Aqoxy2G01239' => 'aox', 'Aqoxy4G01870' => 'aox', 'Aqoxy7G00450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.36ZVTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71EM27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5D6C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH3WRE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3NCM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RIM768' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YB5YRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z36GDV' => 'arhy', 'AT1G08250' => 'ath', 'AT1G11790' => 'ath', 'AT2G27820' => 'ath', 'AT3G07630' => 'ath', 'AT3G44720' => 'ath', 'AT5G22630' => 'ath', 'ATR0693G304' => 'atr', 'ATR0794G109' => 'atr', 'ATR0820G120' => 'atr', 'ATR1159G064' => 'atr', 'Atru.chr10.2239' => 'acertr', 'Atru.chr3.3371' => 'acertr', 'Atru.chr6.3202' => 'acertr', 'AUR62006499' => 'cqu', 'AUR62012718' => 'cqu', 'AUR62021938' => 'cqu', 'AUR62023932' => 'cqu', 'AUR62025034' => 'cqu', 'AUR62025035' => 'cqu', 'AUR62038307' => 'cqu', 'AUR62043466' => 'cqu', 'BcaB02g10748' => 'bca', 'BcaB03g13231' => 'bca', 'BcaB03g14689' => 'bca', 'BcaB05g22716' => 'bca', 'BcaB06g28172' => 'bca', 'BcaB08g36413' => 'bca', 'BcaC01g02186' => 'bca', 'BcaC01g04272' => 'bca', 'BcaC02g08080' => 'bca', 'BcaC02g08227' => 'bca', 'BcaC03g13901' => 'bca', 'BcaC04g19593' => 'bca', 'BcaC04g20874' => 'bca', 'BcaC05g29557' => 'bca', 'BcaC06g35505' => 'bca', 'BcaC07g41954' => 'bca', 'BcaC07g41955' => 'bca', 'BcaC07g41956' => 'bca', 'BcaC07g42519' => 'bca', 'BcaC07g42520' => 'bca', 'BcaC07g42523' => 'bca', 'BcaC07g42524' => 'bca', 'BcaC07g42525' => 'bca', 'BcaC08g47480' => 'bca', 'BcaC08g47481' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00530' => 'bna', 'BolC2t07178H' => 'bol', 'BolC3t16567H' => 'bol', 'BolC4t27234H' => 'bol', 'BolC5t29728H' => 'bol', 'BolC5t34622H' => 'bol', 'BolC6t40321H' => 'bol', 'BolC7t42028H' => 'bol', 'BolC8t49125H' => 'bol', 'BolC8t52538H' => 'bol', 'BolC8t52539H' => 'bol', 'BolC9t56681H' => 'bol', 'BolC9t58266H' => 'bol', 'BolSC21t60294H' => 'bol', 'BraA02t05670Z' => 'bra', 'BraA03t12716Z' => 'bra', 'BraA04t17685Z' => 'bra', 'BraA05t22788Z' => 'bra', 'BraA06t24032Z' => 'bra', 'BraA06t25625Z' => 'bra', 'BraA07t27930Z' => 'bra', 'BraA08t35242Z' => 'bra', 'BraA09t38609Z' => 'bra', 'BraA10t43905Z' => 'bra', 'C02p11060' => 'bna', 'C03p42990' => 'bna', 'C03p67310' => 'bna', 'C04p56990' => 'bna', 'C04p58660' => 'bna', 'C05p09890' => 'bna', 'C05p59680' => 'bna', 'C06p19830' => 'bna', 'C06p53040' => 'bna', 'C07p15230' => 'bna', 'C08p50070' => 'bna', 'C08p50090' => 'bna', 'C09p38330' => 'bna', 'C09p53940' => 'bna', 'CAN.G1014.1' => 'can', 'CAN.G644.30' => 'can', 'CAN.G84.47' => 'can', 'CAN.G919.8' => 'can', 'CANSAT54G0113' => 'cansat', 'CANSAT54G1286' => 'cansat', 'CANSAT64G1020' => 'cansat', 'CARHR008080' => 'chi', 'CARHR008090' => 'chi', 'CARHR012130' => 'chi', 'CARHR038390' => 'chi', 'CARHR082330' => 'chi', 'CARHR120520' => 'chi', 'CARHR151470' => 'chi', 'CARHR190950' => 'chi', 'Carub.0001s0760' => 'cru', 'Carub.0001s1146' => 'cru', 'Carub.0003s0721' => 'cru', 'Carub.0004s0858' => 'cru', 'Carub.0005s1040' => 'cru', 'Carub.0006s2035' => 'cru', 'Carub.0015s0005' => 'cru', 'Ca_01607_v3' => 'car', 'Ca_01677_v3' => 'car', 'Ca_06087_v3' => 'car', 'Ca_19238_v3' => 'car', 'Ca_19373_v3' => 'car', 'Ca_21079_v3' => 'car', 'CBR_g54016' => 'cbr', 'CBR_g54018' => 'cbr', 'CBR_g54020' => 'cbr', 'Cc01_g09780' => 'ccan', 'Cc01_g11680' => 'ccan', 'Cc02_g15610' => 'ccan', 'Cc05_g04350' => 'ccan', 'Cc09_g01580' => 'ccan', 'CDE01G0795' => 'cde', 'CDE02G2024' => 'cde', 'CDE02G2260' => 'cde', 'CDE02G4561' => 'cde', 'CDE05G2733' => 'cde', 'CDE05G3422' => 'cde', 'CDE06G2003' => 'cde', 'CDE08G0576' => 'cde', 'CDE09G0048' => 'cde', 'CDE11G0805' => 'cde', 'Cfa003644' => 'cfa', 'Cfa006290' => 'cfa', 'Cfa010080' => 'cfa', 'Cfa011376' => 'cfa', 'Cfa011576' => 'cfa', 'Cfa011577' => 'cfa', 'Cfa014389' => 'cfa', 'Ciclev10006044m.g' => 'ccl', 'Ciclev10006954m.g' => 'ccl', 'Ciclev10015131m.g' => 'ccl', 'Ciclev10015580m.g' => 'ccl', 'Ciclev10028359m.g' => 'ccl', 'Ciclev10028573m.g' => 'ccl', 'CiPaw.03G159300' => 'cil', 'CiPaw.04G115100' => 'cil', 'CiPaw.09G092800' => 'cil', 'CiPaw.10G071800' => 'cil', 'CiPaw.13G105800' => 'cil', 'CiPaw.13G141000' => 'cil', 'CiPaw.14G103400' => 'cil', 'ClCG01G012700' => 'cla', 'ClCG01G012720' => 'cla', 'ClCG01G021920' => 'cla', 'ClCG02G008870' => 'cla', 'ClCG02G020840' => 'cla', 'ClCG02G021930' => 'cla', 'COL.COLO4_19302' => 'col', 'COL.COLO4_25262' => 'col', 'COL.COLO4_31788' => 'col', 'Cpa.g.c34684' => 'cpa', 'Cpa.g.c36520.1' => 'cpa', 'Cpa.g.c45626' => 'cpa', 'Cpa.g.sc121.17' => 'cpa', 'Cpa.g.sc13.22' => 'cpa', 'Cpa.g.sc87.88' => 'cpa', 'Cre06.g261800' => 'cre', 'CsaV3_1G014500' => 'csa', 'CsaV3_1G014510' => 'csa', 'CsaV3_2G034880' => 'csa', 'CsaV3_6G014760' => 'csa', 'CsaV3_6G021500' => 'csa', 'CsaV3_6G048980' => 'csa', 'CSS0002511' => 'camsi', 'CSS0007556' => 'camsi', 'CSS0008532' => 'camsi', 'CSS0009709' => 'camsi', 'CSS0010486' => 'camsi', 'CSS0016768' => 'camsi', 'CSS0023512' => 'camsi', 'CSS0025341' => 'camsi', 'CSS0027999' => 'camsi', 'CSS0028944' => 'camsi', 'CSS0032292' => 'camsi', 'CSS0032464' => 'camsi', 'CSS0037153' => 'camsi', 'CSS0039256' => 'camsi', 'CSS0048392' => 'camsi', 'CSS0050458' => 'camsi', 'DCAR_004224' => 'dca', 'DCAR_006147' => 'dca', 'DCAR_006465' => 'dca', 'DCAR_008159' => 'dca', 'DCAR_012164' => 'dca', 'DCAR_019764' => 'dca', 'Dinv05418' => 'din', 'Dinv10839' => 'din', 'Dinv12521' => 'din', 'Dinv13900' => 'din', 'Dinv29426' => 'din', 'Duzib150G0263' => 'dzi', 'Duzib168G1178' => 'dzi', 'Duzib168G1924' => 'dzi', 'Duzib170G0299' => 'dzi', 'Duzib170G0813' => 'dzi', 'Duzib235G1128' => 'dzi', 'Duzib248G1060' => 'dzi', 'ECA232G1910' => 'eca', 'ECA233G4621' => 'eca', 'ECA238G1216' => 'eca', 'ECA238G1784' => 'eca', 'ECA248G1242' => 'eca', 'EL10Ac8g20071' => 'bvu', 'EL10Ac9g21086' => 'bvu', 'EL10Ac9g22407' => 'bvu', 'EL10Ac9g22412' => 'bvu', 'Eucgr.A01119' => 'egr', 'Eucgr.E04043' => 'egr', 'Eucgr.J00428' => 'egr', 'Eucgr.J00958' => 'egr', 'FAN11G3091' => 'fan', 'FAN11G3651' => 'fan', 'FAN16G2566' => 'fan', 'FAN21G3155' => 'fan', 'FAN21G3400' => 'fan', 'FAN21G3543' => 'fan', 'FAN25G0234' => 'fan', 'FAN25G1422' => 'fan', 'FAN25G3392' => 'fan', 'FvH4_3g01940' => 'fve', 'FvH4_3g29870' => 'fve', 'FvH4_3g33680' => 'fve', 'Glyma.09G004200' => 'gma', 'Glyma.11G151288' => 'gma', 'Glyma.11G189100' => 'gma', 'Glyma.12G072500' => 'gma', 'Glyma.12G085500' => 'gma', 'Glyma.12G181800' => 'gma', 'Glyma.12G193000' => 'gma', 'Glyma.13G309300' => 'gma', 'Glyma.13G319000' => 'gma', 'Glyma.17G012600' => 'gma', 'Gohir.A06G148600' => 'ghi', 'Gohir.A07G115800' => 'ghi', 'Gohir.A08G003600' => 'ghi', 'Gohir.A09G093300' => 'ghi', 'Gohir.A09G105400' => 'ghi', 'Gohir.A09G105500' => 'ghi', 'Gohir.D06G154600' => 'ghi', 'Gohir.D07G120200' => 'ghi', 'Gohir.D08G013900' => 'ghi', 'Gohir.D09G093100' => 'ghi', 'Gohir.D09G102200' => 'ghi', 'Gohir.D09G102300' => 'ghi', 'Gorai.001G129400' => 'gra', 'Gorai.004G008200' => 'gra', 'Gorai.006G109800' => 'gra', 'Gorai.006G119500' => 'gra', 'Gorai.006G121300' => 'gra', 'Gorai.010G180700' => 'gra', 'GSVIVG01012716001' => 'vvi', 'GSVIVG01025118001' => 'vvi', 'GSVIVG01030439001' => 'vvi', 'GSVIVG01031397001' => 'vvi', 'HanXRQChr01g0004201' => 'han', 'HanXRQChr02g0054941' => 'han', 'HanXRQChr05g0141811' => 'han', 'HanXRQChr07g0197751' => 'han', 'HanXRQChr11g0346691' => 'han', 'HanXRQChr13g0396971' => 'han', 'HanXRQChr14g0432951' => 'han', 'HanXRQChr14g0452001' => 'han', 'HanXRQChr15g0496681' => 'han', 'HanXRQChr17g0557491' => 'han', 'HanXRQChr17g0557501' => 'han', 'Haze_06809' => 'cav', 'Haze_12852' => 'cav', 'Haze_15850' => 'cav', 'Haze_23446' => 'cav', 'Haze_23942' => 'cav', 'Haze_23943' => 'cav', 'Hma1.2p1_0091F.1_g046450' => 'hma', 'Hma1.2p1_0128F.1_g059910' => 'hma', 'Hma1.2p1_0249F.1_g102260' => 'hma', 'Hma1.2p1_0453F.1_g156190' => 'hma', 'Hma1.2p1_0695F.1_g204380' => 'hma', 'Hma1.2p1_0749F.1_g212650' => 'hma', 'Hma1.2p1_2156F.1_g315420' => 'hma', 'Hma1.2p1_2686F.1_g326940' => 'hma', 'HPP92_006428' => 'vpl', 'HPP92_012069' => 'vpl', 'HPP92_014129' => 'vpl', 'HPP92_014133' => 'vpl', 'HPP92_017315' => 'vpl', 'HPP92_026445' => 'vpl', 'HPP92_026446' => 'vpl', 'Hund00774' => 'sun', 'Hund07682' => 'sun', 'Hund21413' => 'sun', 'Hund23462' => 'sun', 'Hund23463' => 'sun', 'Lalb_Chr03g0027911' => 'lal', 'Lalb_Chr13g0304271' => 'lal', 'Lalb_Chr19g0137471' => 'lal', 'Lalb_Chr22g0350651' => 'lal', 'Lalb_Chr24g0395151' => 'lal', 'Lj1A1231T40' => 'lonja', 'Lj1A221T48' => 'lonja', 'Lj1C924T12' => 'lonja', 'Lj2C993G6' => 'lonja', 'Lj3g0005790' => 'lja', 'Lj3g0015432' => 'lja', 'Lj3g0017722' => 'lja', 'Lj3g0018497' => 'lja', 'Lj4g0025071' => 'lja', 'Lsat_1_v5_gn_1_129680' => 'lsa', 'Lsat_1_v5_gn_2_25321' => 'lsa', 'Lsat_1_v5_gn_2_95461' => 'lsa', 'Lsat_1_v5_gn_4_159620' => 'lsa', 'Lsat_1_v5_gn_6_41301' => 'lsa', 'Lsat_1_v5_gn_6_74660' => 'lsa', 'Lsat_1_v5_gn_7_11520' => 'lsa', 'Lsat_1_v5_gn_9_67680' => 'lsa', 'Manes.04G008300' => 'mes', 'Manes.04G008400' => 'mes', 'Manes.04G026500' => 'mes', 'Manes.10G135300' => 'mes', 'Manes.11G157300' => 'mes', 'Manes.12G074000' => 'mes', 'Manes.16G006200' => 'mes', 'Manes.17G026400' => 'mes', 'Mapoly0024s0086' => 'mpo', 'Mapoly0024s0087' => 'mpo', 'Mapoly0071s0057' => 'mpo', 'Mapoly0204s0012' => 'mpo', 'MBI04_g37681_MAGBIO' => 'mbi', 'MBI05_g17779_MAGBIO' => 'mbi', 'MBI12_g31184_MAGBIO' => 'mbi', 'MBI17_g11083_MAGBIO' => 'mbi', 'MBI18_g03883_MAGBIO' => 'mbi', 'MBI18_g28940_MAGBIO' => 'mbi', 'MCO01G690' => 'mco', 'MD03G1109900' => 'mdo', 'MD03G1134800' => 'mdo', 'MD05G1348000' => 'mdo', 'MD10G1322400' => 'mdo', 'MD11G1123300' => 'mdo', 'MD11G1157600' => 'mdo', 'Medtr2g084875' => 'mtr', 'Medtr2g088130' => 'mtr', 'Medtr4g055310' => 'mtr', 'Medtr4g061070' => 'mtr', 'Medtr4g132250' => 'mtr', 'MELO3C004795.2' => 'cme', 'MELO3C004797.2' => 'cme', 'MELO3C007396.2' => 'cme', 'MELO3C019277.2' => 'cme', 'MELO3C021449.2' => 'cme', 'MELO3C025736.2' => 'cme', 'Migut.D02175' => 'egut', 'Migut.H01573' => 'egut', 'Migut.M01327' => 'egut', 'Migut.N02513' => 'egut', 'MSTRG.14638' => 'ama', 'MSTRG.18632' => 'ama', 'MSTRG.7203' => 'ama', 'Nitab4.5_0000533g0140' => 'nta', 'Nitab4.5_0000888g0150' => 'nta', 'Nitab4.5_0001453g0040' => 'nta', 'Nitab4.5_0002827g0090' => 'nta', 'Nitab4.5_0003082g0040' => 'nta', 'Nitab4.5_0007799g0040' => 'nta', 'Nitab4.5_0008983g0010' => 'nta', 'Nitab4.5_0009017g0020' => 'nta', 'Nn1g02132' => 'nnu', 'Nn1g03492' => 'nnu', 'Nn1g03493' => 'nnu', 'Nn1g03494' => 'nnu', 'Nn1g07164' => 'nnu', 'Nn1g07291' => 'nnu', 'Nn2g10655' => 'nnu', 'Nn2g11652' => 'nnu', 'Nn2g14008' => 'nnu', 'Nn3g17476' => 'nnu', 'Nn3g17477' => 'nnu', 'Nn4g22370' => 'nnu', 'Nn4g25255' => 'nnu', 'Nn5g27755' => 'nnu', 'Nn6g34260' => 'nnu', 'Nn6g35041' => 'nnu', 'Oeu005924.1' => 'oeu', 'Oeu008383.1' => 'oeu', 'Oeu014928.1' => 'oeu', 'Oeu019889.1' => 'oeu', 'Oeu022271.1' => 'oeu', 'Oeu025271.1' => 'oeu', 'Oeu036302.1' => 'oeu', 'Oeu044100.1' => 'oeu', 'Os01g0528300' => 'osa', 'Os03g0286200' => 'osa', 'Os04g0406600' => 'osa', 'Os07g0512000' => 'osa', 'Os07g0694600' => 'osa', 'Os08g0411000' => 'osa', 'Os09g0565700' => 'osa', 'Os09g0566050' => 'osa', 'Os10g0523700' => 'osa', 'Peaxi162Scf00002g00514' => 'pax', 'Peaxi162Scf00047g01817' => 'pax', 'Peaxi162Scf00114g00001' => 'pax', 'Peaxi162Scf00147g00613' => 'pax', 'Peaxi162Scf00389g00425' => 'pax', 'PGR042G1139' => 'pgr', 'PGR042G3273' => 'pgr', 'PGR102G2180' => 'pgr', 'PGR119G0234' => 'pgr', 'PGR119G0668' => 'pgr', 'PGSC0003DMG400007122' => 'stu', 'PGSC0003DMG400016478' => 'stu', 'PGSC0003DMG400025374' => 'stu', 'PGSC0003DMG400026536' => 'stu', 'Phvul.003G079600' => 'pvu', 'Phvul.005G115600' => 'pvu', 'Phvul.005G127100' => 'pvu', 'Phvul.006G149500' => 'pvu', 'Phvul.006G149600' => 'pvu', 'Phvul.011G071800' => 'pvu', 'Phvul.011G090400' => 'pvu', 'Potri.004G013400' => 'ptr', 'Potri.004G188100' => 'ptr', 'Potri.008G195500' => 'ptr', 'Potri.009G148800' => 'ptr', 'Potri.011G004700' => 'ptr', 'Pp3c17_22810' => 'ppa', 'Pp3c18_4480' => 'ppa', 'Pp3c19_13030' => 'ppa', 'Pp3c1_33620' => 'ppa', 'Pp3c2_9380' => 'ppa', 'PRCOL_00001023' => 'pco', 'Prupe.3G216300' => 'ppe', 'Prupe.4G019500' => 'ppe', 'Prupe.6G092500' => 'ppe', 'Prupe.6G119200' => 'ppe', 'Psat0s1945g0080' => 'psa', 'Psat0s4167g0040' => 'psa', 'Psat1g185800' => 'psa', 'Psat4g006440' => 'psa', 'Psat4g006480' => 'psa', 'Psat4g168120' => 'psa', 'Psat5g255680' => 'psa', 'Psat5g261760' => 'psa', 'Psat7g222120' => 'psa', 'PSO063G7252' => 'pso', 'PSO170G4778' => 'pso', 'PSO210G2249' => 'pso', 'PSO339G2411' => 'pso', 'PSO339G2457' => 'pso', 'PSO339G2854' => 'pso', 'PSO339G4288' => 'pso', 'PSO339G4615' => 'pso', 'PSO384G2796' => 'pso', 'PSO384G2940' => 'pso', 'PSO384G4227' => 'pso', 'PSO478G1425' => 'pso', 'PSO541G3863' => 'pso', 'PSO675G0507' => 'pso', 'PSO782G0338' => 'pso', 'PSO832G0644' => 'pso', 'QL01p013664' => 'qlo', 'QL01p036598' => 'qlo', 'QL05p072984' => 'qlo', 'QL08p005768' => 'qlo', 'QL08p032743' => 'qlo', 'QL93p0073_0439' => 'qlo', 'QL93p0073_0444' => 'qlo', 'RcHm_v2.0_Chr5g0002851' => 'rch', 'RcHm_v2.0_Chr5g0055201' => 'rch', 'RcHm_v2.0_Chr5g0061191' => 'rch', 'RcHm_v2.0_Chr7g0203231' => 'rch', 'Rhsim01G0208100' => 'rsi', 'Rhsim01G0208200' => 'rsi', 'Rhsim02G0106500' => 'rsi', 'Rhsim03G0107900' => 'rsi', 'Rhsim06G0163400' => 'rsi', 'Rhsim13G0105200' => 'rsi', 'Sabra04G0006300' => 'sbr', 'Sabra04G0127000' => 'sbr', 'Sabra08G0148700' => 'sbr', 'Sabra09G0117400' => 'sbr', 'SalBow1G3326' => 'sbo', 'SalBow3G3228' => 'sbo', 'SalBow6G1634' => 'sbo', 'SalBow6G3603' => 'sbo', 'SalBow6G5266' => 'sbo', 'SalBow7G2265' => 'sbo', 'SalBow8G0850' => 'sbo', 'SalBow8G2592' => 'sbo', 'Sc05g0009240' => 'sci', 'Sc12g0002300' => 'sci', 'Sc21g0000100' => 'sci', 'Sc21g0004720' => 'sci', 'Sed0002949' => 'sed', 'Sed0004114' => 'sed', 'Sed0004306' => 'sed', 'Sed0006172' => 'sed', 'Sed0008413' => 'sed', 'Sed0013809' => 'sed', 'Sed0019556' => 'sed', 'SEGI_03570' => 'sgi', 'SEGI_07859' => 'sgi', 'SEGI_15042' => 'sgi', 'SEGI_16263' => 'sgi', 'SEGI_16552' => 'sgi', 'SEGI_24331' => 'sgi', 'SEGI_27316' => 'sgi', 'SEGI_29521' => 'sgi', 'SEGI_41342' => 'sgi', 'SGA_v2.0_scaffold27G11617' => 'sas', 'SGA_v2.0_scaffold316G48428' => 'sas', 'SGA_v2.0_scaffold49G18261' => 'sas', 'SGA_v2.0_scaffold7G03831' => 'sas', 'SGA_v2.0_scaffold93G28359' => 'sas', 'SHI02210' => 'shi', 'SHI06028' => 'shi', 'SHI06321' => 'shi', 'SMO111G0012' => 'smo', 'SMO228G0080' => 'smo', 'SMO356G0756' => 'smo', 'Solyc02g080620.3' => 'sly', 'Solyc06g074530.1' => 'sly', 'Solyc11g066890.1' => 'sly', 'Solyc11g072520.3' => 'sly', 'Sopen02g025330' => 'spe', 'Sopen06g031000' => 'spe', 'Sopen09g008240' => 'spe', 'Sopen09g025210' => 'spe', 'Sopen11g026600' => 'spe', 'Sopen11g030170' => 'spe', 'Sp1g10420' => 'spa', 'Sp3g06570' => 'spa', 'Sp4g10660' => 'spa', 'Sp5g16460' => 'spa', 'Sp6g22710' => 'spa', 'TAR365G0112' => 'tar', 'TAR369G0717' => 'tar', 'TAR374G0976' => 'tar', 'TAR623G1128' => 'tar', 'TAR626G1937' => 'tar', 'TAR627G0123' => 'tar', 'TAR628G0305' => 'tar', 'TAR636G1176' => 'tar', 'TAR636G2442' => 'tar', 'THA.LOC104800556' => 'tha', 'THA.LOC104809501' => 'tha', 'THA.LOC104815126' => 'tha', 'THA.LOC104815732' => 'tha', 'THA.LOC104823528' => 'tha', 'Thecc.02G365600' => 'tca', 'Thecc.06G222300' => 'tca', 'Thecc.09G261800' => 'tca', 'Thecc.09G291400' => 'tca', 'Thhalv10003028m.g' => 'esa', 'Thhalv10007886m.g' => 'esa', 'Thhalv10016085m.g' => 'esa', 'Thhalv10016681m.g' => 'esa', 'Thhalv10020951m.g' => 'esa', 'TPR.G15598' => 'tpr', 'TPR.G29305' => 'tpr', 'TPR.G32395' => 'tpr', 'TPR.G36998' => 'tpr', 'TPR.G4227' => 'tpr', 'TWI18G1433' => 'twi', 'TWI31G0755' => 'twi', 'TWI38G0912' => 'twi', 'TWI75G1097' => 'twi', 'TWI75G1619' => 'twi', 'TWI79G1336' => 'twi', 'unitig_0.g943' => 'ugi', 'unitig_0.g944' => 'ugi', 'unitig_22.g6646' => 'ugi', 'unitig_37.g12681' => 'ugi', 'unitig_8.g3290' => 'ugi', 'vmacro03278' => 'vma', 'vmacro12197' => 'vma', 'vmacro14478' => 'vma', 'vmacro15787' => 'vma', 'vmacro15789' => 'vma', 'vmacro15790' => 'vma', 'vmacro15806' => 'vma', 'vmacro22907' => 'vma', 'vmacro22908' => 'vma', 'vmacro22909' => 'vma', 'vmacro23108' => 'vma', 'VMungo0540G0540' => 'vmu', 'VMungo0540G2468' => 'vmu', 'VMungo1080G0390' => 'vmu', 'VMungo1080G1165' => 'vmu', 'VMungo1127G0170' => 'vmu', 'VMungo1127G2099' => 'vmu', 'VMungo1215G3013' => 'vmu', 'Zm00001eb013110' => 'zma', 'Zm00001eb084260' => 'zma', 'Zm00001eb096110' => 'zma', 'Zm00001eb217510' => 'zma', 'Zm00001eb322550' => 'zma', 'Zm00001eb390770' => 'zma', 'Zm00001eb397170' => 'zma', 'Zm00001eb404610' => 'zma', 'Zm00001eb421790' => 'zma' ) $gf_id = 'HOM05D000911' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000911' ) $data_identifier = 'HOM05D000911' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 16, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 5, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 6, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 8, 'nnu' => (int) 16, 'oeu' => (int) 8, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 5, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 16, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421790' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000911', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27780' => 'bna', 'A03p35380' => 'bna', 'A04p21160' => 'bna', 'A05p40570' => 'bna', 'A06p26900' => 'bna', 'A08p33230' => 'bna', 'A09p65960' => 'bna', 'A10p18290' => 'bna', 'Aa31LG1G12990' => 'aar', 'Aa31LG1G2980' => 'aar', 'Aa31LG4G14320' => 'aar', 'Aa31LG7G11800' => 'aar', 'Aa31sc36G50' => 'aar', 'Aa31sc36G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3721' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5459' => 'aag', 'Actinidia03028' => 'ach', 'Actinidia03753' => 'ach', 'Actinidia04187' => 'ach', 'Actinidia05509' => 'ach', 'Actinidia24180' => 'ach', 'Actinidia26906' => 'ach', 'Actinidia37097' => 'ach', 'Actinidia38249' => 'ach', 'Ah.01g003470' => 'amhyb', 'Ah.01g004580' => 'amhyb', 'Ah.01g014850' => 'amhyb', 'Ah.01g016830' => 'amhyb', 'Ah.14g088000' => 'amhyb', 'AL1G22980' => 'aly', 'AL3G18990' => 'aly', 'AL4G22440' => 'aly', 'AL4G33180' => 'aly', 'AL5G22920' => 'aly', 'AL6G33660' => 'aly', 'AL8G20720' => 'aly', 'Aqoxy1G00935' => 'aox', 'Aqoxy1G02094' => 'aox', 'Aqoxy2G01239' => 'aox', 'Aqoxy4G01870' => 'aox', 'Aqoxy7G00450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.36ZVTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71EM27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5D6C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH3WRE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3NCM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RIM768' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YB5YRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z36GDV' => 'arhy', 'AT1G08250' => 'ath', 'AT1G11790' => 'ath', 'AT2G27820' => 'ath', 'AT3G07630' => 'ath', 'AT3G44720' => 'ath', 'AT5G22630' => 'ath', 'ATR0693G304' => 'atr', 'ATR0794G109' => 'atr', 'ATR0820G120' => 'atr', 'ATR1159G064' => 'atr', 'Atru.chr10.2239' => 'acertr', 'Atru.chr3.3371' => 'acertr', 'Atru.chr6.3202' => 'acertr', 'AUR62006499' => 'cqu', 'AUR62012718' => 'cqu', 'AUR62021938' => 'cqu', 'AUR62023932' => 'cqu', 'AUR62025034' => 'cqu', 'AUR62025035' => 'cqu', 'AUR62038307' => 'cqu', 'AUR62043466' => 'cqu', 'BcaB02g10748' => 'bca', 'BcaB03g13231' => 'bca', 'BcaB03g14689' => 'bca', 'BcaB05g22716' => 'bca', 'BcaB06g28172' => 'bca', 'BcaB08g36413' => 'bca', 'BcaC01g02186' => 'bca', 'BcaC01g04272' => 'bca', 'BcaC02g08080' => 'bca', 'BcaC02g08227' => 'bca', 'BcaC03g13901' => 'bca', 'BcaC04g19593' => 'bca', 'BcaC04g20874' => 'bca', 'BcaC05g29557' => 'bca', 'BcaC06g35505' => 'bca', 'BcaC07g41954' => 'bca', 'BcaC07g41955' => 'bca', 'BcaC07g41956' => 'bca', 'BcaC07g42519' => 'bca', 'BcaC07g42520' => 'bca', 'BcaC07g42523' => 'bca', 'BcaC07g42524' => 'bca', 'BcaC07g42525' => 'bca', 'BcaC08g47480' => 'bca', 'BcaC08g47481' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00530' => 'bna', 'BolC2t07178H' => 'bol', 'BolC3t16567H' => 'bol', 'BolC4t27234H' => 'bol', 'BolC5t29728H' => 'bol', 'BolC5t34622H' => 'bol', 'BolC6t40321H' => 'bol', 'BolC7t42028H' => 'bol', 'BolC8t49125H' => 'bol', 'BolC8t52538H' => 'bol', 'BolC8t52539H' => 'bol', 'BolC9t56681H' => 'bol', 'BolC9t58266H' => 'bol', 'BolSC21t60294H' => 'bol', 'BraA02t05670Z' => 'bra', 'BraA03t12716Z' => 'bra', 'BraA04t17685Z' => 'bra', 'BraA05t22788Z' => 'bra', 'BraA06t24032Z' => 'bra', 'BraA06t25625Z' => 'bra', 'BraA07t27930Z' => 'bra', 'BraA08t35242Z' => 'bra', 'BraA09t38609Z' => 'bra', 'BraA10t43905Z' => 'bra', 'C02p11060' => 'bna', 'C03p42990' => 'bna', 'C03p67310' => 'bna', 'C04p56990' => 'bna', 'C04p58660' => 'bna', 'C05p09890' => 'bna', 'C05p59680' => 'bna', 'C06p19830' => 'bna', 'C06p53040' => 'bna', 'C07p15230' => 'bna', 'C08p50070' => 'bna', 'C08p50090' => 'bna', 'C09p38330' => 'bna', 'C09p53940' => 'bna', 'CAN.G1014.1' => 'can', 'CAN.G644.30' => 'can', 'CAN.G84.47' => 'can', 'CAN.G919.8' => 'can', 'CANSAT54G0113' => 'cansat', 'CANSAT54G1286' => 'cansat', 'CANSAT64G1020' => 'cansat', 'CARHR008080' => 'chi', 'CARHR008090' => 'chi', 'CARHR012130' => 'chi', 'CARHR038390' => 'chi', 'CARHR082330' => 'chi', 'CARHR120520' => 'chi', 'CARHR151470' => 'chi', 'CARHR190950' => 'chi', 'Carub.0001s0760' => 'cru', 'Carub.0001s1146' => 'cru', 'Carub.0003s0721' => 'cru', 'Carub.0004s0858' => 'cru', 'Carub.0005s1040' => 'cru', 'Carub.0006s2035' => 'cru', 'Carub.0015s0005' => 'cru', 'Ca_01607_v3' => 'car', 'Ca_01677_v3' => 'car', 'Ca_06087_v3' => 'car', 'Ca_19238_v3' => 'car', 'Ca_19373_v3' => 'car', 'Ca_21079_v3' => 'car', 'CBR_g54016' => 'cbr', 'CBR_g54018' => 'cbr', 'CBR_g54020' => 'cbr', 'Cc01_g09780' => 'ccan', 'Cc01_g11680' => 'ccan', 'Cc02_g15610' => 'ccan', 'Cc05_g04350' => 'ccan', 'Cc09_g01580' => 'ccan', 'CDE01G0795' => 'cde', 'CDE02G2024' => 'cde', 'CDE02G2260' => 'cde', 'CDE02G4561' => 'cde', 'CDE05G2733' => 'cde', 'CDE05G3422' => 'cde', 'CDE06G2003' => 'cde', 'CDE08G0576' => 'cde', 'CDE09G0048' => 'cde', 'CDE11G0805' => 'cde', 'Cfa003644' => 'cfa', 'Cfa006290' => 'cfa', 'Cfa010080' => 'cfa', 'Cfa011376' => 'cfa', 'Cfa011576' => 'cfa', 'Cfa011577' => 'cfa', 'Cfa014389' => 'cfa', 'Ciclev10006044m.g' => 'ccl', 'Ciclev10006954m.g' => 'ccl', 'Ciclev10015131m.g' => 'ccl', 'Ciclev10015580m.g' => 'ccl', 'Ciclev10028359m.g' => 'ccl', 'Ciclev10028573m.g' => 'ccl', 'CiPaw.03G159300' => 'cil', 'CiPaw.04G115100' => 'cil', 'CiPaw.09G092800' => 'cil', 'CiPaw.10G071800' => 'cil', 'CiPaw.13G105800' => 'cil', 'CiPaw.13G141000' => 'cil', 'CiPaw.14G103400' => 'cil', 'ClCG01G012700' => 'cla', 'ClCG01G012720' => 'cla', 'ClCG01G021920' => 'cla', 'ClCG02G008870' => 'cla', 'ClCG02G020840' => 'cla', 'ClCG02G021930' => 'cla', 'COL.COLO4_19302' => 'col', 'COL.COLO4_25262' => 'col', 'COL.COLO4_31788' => 'col', 'Cpa.g.c34684' => 'cpa', 'Cpa.g.c36520.1' => 'cpa', 'Cpa.g.c45626' => 'cpa', 'Cpa.g.sc121.17' => 'cpa', 'Cpa.g.sc13.22' => 'cpa', 'Cpa.g.sc87.88' => 'cpa', 'Cre06.g261800' => 'cre', 'CsaV3_1G014500' => 'csa', 'CsaV3_1G014510' => 'csa', 'CsaV3_2G034880' => 'csa', 'CsaV3_6G014760' => 'csa', 'CsaV3_6G021500' => 'csa', 'CsaV3_6G048980' => 'csa', 'CSS0002511' => 'camsi', 'CSS0007556' => 'camsi', 'CSS0008532' => 'camsi', 'CSS0009709' => 'camsi', 'CSS0010486' => 'camsi', 'CSS0016768' => 'camsi', 'CSS0023512' => 'camsi', 'CSS0025341' => 'camsi', 'CSS0027999' => 'camsi', 'CSS0028944' => 'camsi', 'CSS0032292' => 'camsi', 'CSS0032464' => 'camsi', 'CSS0037153' => 'camsi', 'CSS0039256' => 'camsi', 'CSS0048392' => 'camsi', 'CSS0050458' => 'camsi', 'DCAR_004224' => 'dca', 'DCAR_006147' => 'dca', 'DCAR_006465' => 'dca', 'DCAR_008159' => 'dca', 'DCAR_012164' => 'dca', 'DCAR_019764' => 'dca', 'Dinv05418' => 'din', 'Dinv10839' => 'din', 'Dinv12521' => 'din', 'Dinv13900' => 'din', 'Dinv29426' => 'din', 'Duzib150G0263' => 'dzi', 'Duzib168G1178' => 'dzi', 'Duzib168G1924' => 'dzi', 'Duzib170G0299' => 'dzi', 'Duzib170G0813' => 'dzi', 'Duzib235G1128' => 'dzi', 'Duzib248G1060' => 'dzi', 'ECA232G1910' => 'eca', 'ECA233G4621' => 'eca', 'ECA238G1216' => 'eca', 'ECA238G1784' => 'eca', 'ECA248G1242' => 'eca', 'EL10Ac8g20071' => 'bvu', 'EL10Ac9g21086' => 'bvu', 'EL10Ac9g22407' => 'bvu', 'EL10Ac9g22412' => 'bvu', 'Eucgr.A01119' => 'egr', 'Eucgr.E04043' => 'egr', 'Eucgr.J00428' => 'egr', 'Eucgr.J00958' => 'egr', 'FAN11G3091' => 'fan', 'FAN11G3651' => 'fan', 'FAN16G2566' => 'fan', 'FAN21G3155' => 'fan', 'FAN21G3400' => 'fan', 'FAN21G3543' => 'fan', 'FAN25G0234' => 'fan', 'FAN25G1422' => 'fan', 'FAN25G3392' => 'fan', 'FvH4_3g01940' => 'fve', 'FvH4_3g29870' => 'fve', 'FvH4_3g33680' => 'fve', 'Glyma.09G004200' => 'gma', 'Glyma.11G151288' => 'gma', 'Glyma.11G189100' => 'gma', 'Glyma.12G072500' => 'gma', 'Glyma.12G085500' => 'gma', 'Glyma.12G181800' => 'gma', 'Glyma.12G193000' => 'gma', 'Glyma.13G309300' => 'gma', 'Glyma.13G319000' => 'gma', 'Glyma.17G012600' => 'gma', 'Gohir.A06G148600' => 'ghi', 'Gohir.A07G115800' => 'ghi', 'Gohir.A08G003600' => 'ghi', 'Gohir.A09G093300' => 'ghi', 'Gohir.A09G105400' => 'ghi', 'Gohir.A09G105500' => 'ghi', 'Gohir.D06G154600' => 'ghi', 'Gohir.D07G120200' => 'ghi', 'Gohir.D08G013900' => 'ghi', 'Gohir.D09G093100' => 'ghi', 'Gohir.D09G102200' => 'ghi', 'Gohir.D09G102300' => 'ghi', 'Gorai.001G129400' => 'gra', 'Gorai.004G008200' => 'gra', 'Gorai.006G109800' => 'gra', 'Gorai.006G119500' => 'gra', 'Gorai.006G121300' => 'gra', 'Gorai.010G180700' => 'gra', 'GSVIVG01012716001' => 'vvi', 'GSVIVG01025118001' => 'vvi', 'GSVIVG01030439001' => 'vvi', 'GSVIVG01031397001' => 'vvi', 'HanXRQChr01g0004201' => 'han', 'HanXRQChr02g0054941' => 'han', 'HanXRQChr05g0141811' => 'han', 'HanXRQChr07g0197751' => 'han', 'HanXRQChr11g0346691' => 'han', 'HanXRQChr13g0396971' => 'han', 'HanXRQChr14g0432951' => 'han', 'HanXRQChr14g0452001' => 'han', 'HanXRQChr15g0496681' => 'han', 'HanXRQChr17g0557491' => 'han', 'HanXRQChr17g0557501' => 'han', 'Haze_06809' => 'cav', 'Haze_12852' => 'cav', 'Haze_15850' => 'cav', 'Haze_23446' => 'cav', 'Haze_23942' => 'cav', 'Haze_23943' => 'cav', 'Hma1.2p1_0091F.1_g046450' => 'hma', 'Hma1.2p1_0128F.1_g059910' => 'hma', 'Hma1.2p1_0249F.1_g102260' => 'hma', 'Hma1.2p1_0453F.1_g156190' => 'hma', 'Hma1.2p1_0695F.1_g204380' => 'hma', 'Hma1.2p1_0749F.1_g212650' => 'hma', 'Hma1.2p1_2156F.1_g315420' => 'hma', 'Hma1.2p1_2686F.1_g326940' => 'hma', 'HPP92_006428' => 'vpl', 'HPP92_012069' => 'vpl', 'HPP92_014129' => 'vpl', 'HPP92_014133' => 'vpl', 'HPP92_017315' => 'vpl', 'HPP92_026445' => 'vpl', 'HPP92_026446' => 'vpl', 'Hund00774' => 'sun', 'Hund07682' => 'sun', 'Hund21413' => 'sun', 'Hund23462' => 'sun', 'Hund23463' => 'sun', 'Lalb_Chr03g0027911' => 'lal', 'Lalb_Chr13g0304271' => 'lal', 'Lalb_Chr19g0137471' => 'lal', 'Lalb_Chr22g0350651' => 'lal', 'Lalb_Chr24g0395151' => 'lal', 'Lj1A1231T40' => 'lonja', 'Lj1A221T48' => 'lonja', 'Lj1C924T12' => 'lonja', 'Lj2C993G6' => 'lonja', 'Lj3g0005790' => 'lja', 'Lj3g0015432' => 'lja', 'Lj3g0017722' => 'lja', 'Lj3g0018497' => 'lja', 'Lj4g0025071' => 'lja', 'Lsat_1_v5_gn_1_129680' => 'lsa', 'Lsat_1_v5_gn_2_25321' => 'lsa', 'Lsat_1_v5_gn_2_95461' => 'lsa', 'Lsat_1_v5_gn_4_159620' => 'lsa', 'Lsat_1_v5_gn_6_41301' => 'lsa', 'Lsat_1_v5_gn_6_74660' => 'lsa', 'Lsat_1_v5_gn_7_11520' => 'lsa', 'Lsat_1_v5_gn_9_67680' => 'lsa', 'Manes.04G008300' => 'mes', 'Manes.04G008400' => 'mes', 'Manes.04G026500' => 'mes', 'Manes.10G135300' => 'mes', 'Manes.11G157300' => 'mes', 'Manes.12G074000' => 'mes', 'Manes.16G006200' => 'mes', 'Manes.17G026400' => 'mes', 'Mapoly0024s0086' => 'mpo', 'Mapoly0024s0087' => 'mpo', 'Mapoly0071s0057' => 'mpo', 'Mapoly0204s0012' => 'mpo', 'MBI04_g37681_MAGBIO' => 'mbi', 'MBI05_g17779_MAGBIO' => 'mbi', 'MBI12_g31184_MAGBIO' => 'mbi', 'MBI17_g11083_MAGBIO' => 'mbi', 'MBI18_g03883_MAGBIO' => 'mbi', 'MBI18_g28940_MAGBIO' => 'mbi', 'MCO01G690' => 'mco', 'MD03G1109900' => 'mdo', 'MD03G1134800' => 'mdo', 'MD05G1348000' => 'mdo', 'MD10G1322400' => 'mdo', 'MD11G1123300' => 'mdo', 'MD11G1157600' => 'mdo', 'Medtr2g084875' => 'mtr', 'Medtr2g088130' => 'mtr', 'Medtr4g055310' => 'mtr', 'Medtr4g061070' => 'mtr', 'Medtr4g132250' => 'mtr', 'MELO3C004795.2' => 'cme', 'MELO3C004797.2' => 'cme', 'MELO3C007396.2' => 'cme', 'MELO3C019277.2' => 'cme', 'MELO3C021449.2' => 'cme', 'MELO3C025736.2' => 'cme', 'Migut.D02175' => 'egut', 'Migut.H01573' => 'egut', 'Migut.M01327' => 'egut', 'Migut.N02513' => 'egut', 'MSTRG.14638' => 'ama', 'MSTRG.18632' => 'ama', 'MSTRG.7203' => 'ama', 'Nitab4.5_0000533g0140' => 'nta', 'Nitab4.5_0000888g0150' => 'nta', 'Nitab4.5_0001453g0040' => 'nta', 'Nitab4.5_0002827g0090' => 'nta', 'Nitab4.5_0003082g0040' => 'nta', 'Nitab4.5_0007799g0040' => 'nta', 'Nitab4.5_0008983g0010' => 'nta', 'Nitab4.5_0009017g0020' => 'nta', 'Nn1g02132' => 'nnu', 'Nn1g03492' => 'nnu', 'Nn1g03493' => 'nnu', 'Nn1g03494' => 'nnu', 'Nn1g07164' => 'nnu', 'Nn1g07291' => 'nnu', 'Nn2g10655' => 'nnu', 'Nn2g11652' => 'nnu', 'Nn2g14008' => 'nnu', 'Nn3g17476' => 'nnu', 'Nn3g17477' => 'nnu', 'Nn4g22370' => 'nnu', 'Nn4g25255' => 'nnu', 'Nn5g27755' => 'nnu', 'Nn6g34260' => 'nnu', 'Nn6g35041' => 'nnu', 'Oeu005924.1' => 'oeu', 'Oeu008383.1' => 'oeu', 'Oeu014928.1' => 'oeu', 'Oeu019889.1' => 'oeu', 'Oeu022271.1' => 'oeu', 'Oeu025271.1' => 'oeu', 'Oeu036302.1' => 'oeu', 'Oeu044100.1' => 'oeu', 'Os01g0528300' => 'osa', 'Os03g0286200' => 'osa', 'Os04g0406600' => 'osa', 'Os07g0512000' => 'osa', 'Os07g0694600' => 'osa', 'Os08g0411000' => 'osa', 'Os09g0565700' => 'osa', 'Os09g0566050' => 'osa', 'Os10g0523700' => 'osa', 'Peaxi162Scf00002g00514' => 'pax', 'Peaxi162Scf00047g01817' => 'pax', 'Peaxi162Scf00114g00001' => 'pax', 'Peaxi162Scf00147g00613' => 'pax', 'Peaxi162Scf00389g00425' => 'pax', 'PGR042G1139' => 'pgr', 'PGR042G3273' => 'pgr', 'PGR102G2180' => 'pgr', 'PGR119G0234' => 'pgr', 'PGR119G0668' => 'pgr', 'PGSC0003DMG400007122' => 'stu', 'PGSC0003DMG400016478' => 'stu', 'PGSC0003DMG400025374' => 'stu', 'PGSC0003DMG400026536' => 'stu', 'Phvul.003G079600' => 'pvu', 'Phvul.005G115600' => 'pvu', 'Phvul.005G127100' => 'pvu', 'Phvul.006G149500' => 'pvu', 'Phvul.006G149600' => 'pvu', 'Phvul.011G071800' => 'pvu', 'Phvul.011G090400' => 'pvu', 'Potri.004G013400' => 'ptr', 'Potri.004G188100' => 'ptr', 'Potri.008G195500' => 'ptr', 'Potri.009G148800' => 'ptr', 'Potri.011G004700' => 'ptr', 'Pp3c17_22810' => 'ppa', 'Pp3c18_4480' => 'ppa', 'Pp3c19_13030' => 'ppa', 'Pp3c1_33620' => 'ppa', 'Pp3c2_9380' => 'ppa', 'PRCOL_00001023' => 'pco', 'Prupe.3G216300' => 'ppe', 'Prupe.4G019500' => 'ppe', 'Prupe.6G092500' => 'ppe', 'Prupe.6G119200' => 'ppe', 'Psat0s1945g0080' => 'psa', 'Psat0s4167g0040' => 'psa', 'Psat1g185800' => 'psa', 'Psat4g006440' => 'psa', 'Psat4g006480' => 'psa', 'Psat4g168120' => 'psa', 'Psat5g255680' => 'psa', 'Psat5g261760' => 'psa', 'Psat7g222120' => 'psa', 'PSO063G7252' => 'pso', 'PSO170G4778' => 'pso', 'PSO210G2249' => 'pso', 'PSO339G2411' => 'pso', 'PSO339G2457' => 'pso', 'PSO339G2854' => 'pso', 'PSO339G4288' => 'pso', 'PSO339G4615' => 'pso', 'PSO384G2796' => 'pso', 'PSO384G2940' => 'pso', 'PSO384G4227' => 'pso', 'PSO478G1425' => 'pso', 'PSO541G3863' => 'pso', 'PSO675G0507' => 'pso', 'PSO782G0338' => 'pso', 'PSO832G0644' => 'pso', 'QL01p013664' => 'qlo', 'QL01p036598' => 'qlo', 'QL05p072984' => 'qlo', 'QL08p005768' => 'qlo', 'QL08p032743' => 'qlo', 'QL93p0073_0439' => 'qlo', 'QL93p0073_0444' => 'qlo', 'RcHm_v2.0_Chr5g0002851' => 'rch', 'RcHm_v2.0_Chr5g0055201' => 'rch', 'RcHm_v2.0_Chr5g0061191' => 'rch', 'RcHm_v2.0_Chr7g0203231' => 'rch', 'Rhsim01G0208100' => 'rsi', 'Rhsim01G0208200' => 'rsi', 'Rhsim02G0106500' => 'rsi', 'Rhsim03G0107900' => 'rsi', 'Rhsim06G0163400' => 'rsi', 'Rhsim13G0105200' => 'rsi', 'Sabra04G0006300' => 'sbr', 'Sabra04G0127000' => 'sbr', 'Sabra08G0148700' => 'sbr', 'Sabra09G0117400' => 'sbr', 'SalBow1G3326' => 'sbo', 'SalBow3G3228' => 'sbo', 'SalBow6G1634' => 'sbo', 'SalBow6G3603' => 'sbo', 'SalBow6G5266' => 'sbo', 'SalBow7G2265' => 'sbo', 'SalBow8G0850' => 'sbo', 'SalBow8G2592' => 'sbo', 'Sc05g0009240' => 'sci', 'Sc12g0002300' => 'sci', 'Sc21g0000100' => 'sci', 'Sc21g0004720' => 'sci', 'Sed0002949' => 'sed', 'Sed0004114' => 'sed', 'Sed0004306' => 'sed', 'Sed0006172' => 'sed', 'Sed0008413' => 'sed', 'Sed0013809' => 'sed', 'Sed0019556' => 'sed', 'SEGI_03570' => 'sgi', 'SEGI_07859' => 'sgi', 'SEGI_15042' => 'sgi', 'SEGI_16263' => 'sgi', 'SEGI_16552' => 'sgi', 'SEGI_24331' => 'sgi', 'SEGI_27316' => 'sgi', 'SEGI_29521' => 'sgi', 'SEGI_41342' => 'sgi', 'SGA_v2.0_scaffold27G11617' => 'sas', 'SGA_v2.0_scaffold316G48428' => 'sas', 'SGA_v2.0_scaffold49G18261' => 'sas', 'SGA_v2.0_scaffold7G03831' => 'sas', 'SGA_v2.0_scaffold93G28359' => 'sas', 'SHI02210' => 'shi', 'SHI06028' => 'shi', 'SHI06321' => 'shi', 'SMO111G0012' => 'smo', 'SMO228G0080' => 'smo', 'SMO356G0756' => 'smo', 'Solyc02g080620.3' => 'sly', 'Solyc06g074530.1' => 'sly', 'Solyc11g066890.1' => 'sly', 'Solyc11g072520.3' => 'sly', 'Sopen02g025330' => 'spe', 'Sopen06g031000' => 'spe', 'Sopen09g008240' => 'spe', 'Sopen09g025210' => 'spe', 'Sopen11g026600' => 'spe', 'Sopen11g030170' => 'spe', 'Sp1g10420' => 'spa', 'Sp3g06570' => 'spa', 'Sp4g10660' => 'spa', 'Sp5g16460' => 'spa', 'Sp6g22710' => 'spa', 'TAR365G0112' => 'tar', 'TAR369G0717' => 'tar', 'TAR374G0976' => 'tar', 'TAR623G1128' => 'tar', 'TAR626G1937' => 'tar', 'TAR627G0123' => 'tar', 'TAR628G0305' => 'tar', 'TAR636G1176' => 'tar', 'TAR636G2442' => 'tar', 'THA.LOC104800556' => 'tha', 'THA.LOC104809501' => 'tha', 'THA.LOC104815126' => 'tha', 'THA.LOC104815732' => 'tha', 'THA.LOC104823528' => 'tha', 'Thecc.02G365600' => 'tca', 'Thecc.06G222300' => 'tca', 'Thecc.09G261800' => 'tca', 'Thecc.09G291400' => 'tca', 'Thhalv10003028m.g' => 'esa', 'Thhalv10007886m.g' => 'esa', 'Thhalv10016085m.g' => 'esa', 'Thhalv10016681m.g' => 'esa', 'Thhalv10020951m.g' => 'esa', 'TPR.G15598' => 'tpr', 'TPR.G29305' => 'tpr', 'TPR.G32395' => 'tpr', 'TPR.G36998' => 'tpr', 'TPR.G4227' => 'tpr', 'TWI18G1433' => 'twi', 'TWI31G0755' => 'twi', 'TWI38G0912' => 'twi', 'TWI75G1097' => 'twi', 'TWI75G1619' => 'twi', 'TWI79G1336' => 'twi', 'unitig_0.g943' => 'ugi', 'unitig_0.g944' => 'ugi', 'unitig_22.g6646' => 'ugi', 'unitig_37.g12681' => 'ugi', 'unitig_8.g3290' => 'ugi', 'vmacro03278' => 'vma', 'vmacro12197' => 'vma', 'vmacro14478' => 'vma', 'vmacro15787' => 'vma', 'vmacro15789' => 'vma', 'vmacro15790' => 'vma', 'vmacro15806' => 'vma', 'vmacro22907' => 'vma', 'vmacro22908' => 'vma', 'vmacro22909' => 'vma', 'vmacro23108' => 'vma', 'VMungo0540G0540' => 'vmu', 'VMungo0540G2468' => 'vmu', 'VMungo1080G0390' => 'vmu', 'VMungo1080G1165' => 'vmu', 'VMungo1127G0170' => 'vmu', 'VMungo1127G2099' => 'vmu', 'VMungo1215G3013' => 'vmu', 'Zm00001eb013110' => 'zma', 'Zm00001eb084260' => 'zma', 'Zm00001eb096110' => 'zma', 'Zm00001eb217510' => 'zma', 'Zm00001eb322550' => 'zma', 'Zm00001eb390770' => 'zma', 'Zm00001eb397170' => 'zma', 'Zm00001eb404610' => 'zma', 'Zm00001eb421790' => 'zma' ), 'gf_id' => 'HOM05D000911', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000911' ), 'data_identifier' => 'HOM05D000911', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000911', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27780' => 'bna', 'A03p35380' => 'bna', 'A04p21160' => 'bna', 'A05p40570' => 'bna', 'A06p26900' => 'bna', 'A08p33230' => 'bna', 'A09p65960' => 'bna', 'A10p18290' => 'bna', 'Aa31LG1G12990' => 'aar', 'Aa31LG1G2980' => 'aar', 'Aa31LG4G14320' => 'aar', 'Aa31LG7G11800' => 'aar', 'Aa31sc36G50' => 'aar', 'Aa31sc36G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3721' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5459' => 'aag', 'Actinidia03028' => 'ach', 'Actinidia03753' => 'ach', 'Actinidia04187' => 'ach', 'Actinidia05509' => 'ach', 'Actinidia24180' => 'ach', 'Actinidia26906' => 'ach', 'Actinidia37097' => 'ach', 'Actinidia38249' => 'ach', 'Ah.01g003470' => 'amhyb', 'Ah.01g004580' => 'amhyb', 'Ah.01g014850' => 'amhyb', 'Ah.01g016830' => 'amhyb', 'Ah.14g088000' => 'amhyb', 'AL1G22980' => 'aly', 'AL3G18990' => 'aly', 'AL4G22440' => 'aly', 'AL4G33180' => 'aly', 'AL5G22920' => 'aly', 'AL6G33660' => 'aly', 'AL8G20720' => 'aly', 'Aqoxy1G00935' => 'aox', 'Aqoxy1G02094' => 'aox', 'Aqoxy2G01239' => 'aox', 'Aqoxy4G01870' => 'aox', 'Aqoxy7G00450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.36ZVTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71EM27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5D6C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH3WRE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3NCM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RIM768' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YB5YRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z36GDV' => 'arhy', 'AT1G08250' => 'ath', 'AT1G11790' => 'ath', 'AT2G27820' => 'ath', 'AT3G07630' => 'ath', 'AT3G44720' => 'ath', 'AT5G22630' => 'ath', 'ATR0693G304' => 'atr', 'ATR0794G109' => 'atr', 'ATR0820G120' => 'atr', 'ATR1159G064' => 'atr', 'Atru.chr10.2239' => 'acertr', 'Atru.chr3.3371' => 'acertr', 'Atru.chr6.3202' => 'acertr', 'AUR62006499' => 'cqu', 'AUR62012718' => 'cqu', 'AUR62021938' => 'cqu', 'AUR62023932' => 'cqu', 'AUR62025034' => 'cqu', 'AUR62025035' => 'cqu', 'AUR62038307' => 'cqu', 'AUR62043466' => 'cqu', 'BcaB02g10748' => 'bca', 'BcaB03g13231' => 'bca', 'BcaB03g14689' => 'bca', 'BcaB05g22716' => 'bca', 'BcaB06g28172' => 'bca', 'BcaB08g36413' => 'bca', 'BcaC01g02186' => 'bca', 'BcaC01g04272' => 'bca', 'BcaC02g08080' => 'bca', 'BcaC02g08227' => 'bca', 'BcaC03g13901' => 'bca', 'BcaC04g19593' => 'bca', 'BcaC04g20874' => 'bca', 'BcaC05g29557' => 'bca', 'BcaC06g35505' => 'bca', 'BcaC07g41954' => 'bca', 'BcaC07g41955' => 'bca', 'BcaC07g41956' => 'bca', 'BcaC07g42519' => 'bca', 'BcaC07g42520' => 'bca', 'BcaC07g42523' => 'bca', 'BcaC07g42524' => 'bca', 'BcaC07g42525' => 'bca', 'BcaC08g47480' => 'bca', 'BcaC08g47481' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00530' => 'bna', 'BolC2t07178H' => 'bol', 'BolC3t16567H' => 'bol', 'BolC4t27234H' => 'bol', 'BolC5t29728H' => 'bol', 'BolC5t34622H' => 'bol', 'BolC6t40321H' => 'bol', 'BolC7t42028H' => 'bol', 'BolC8t49125H' => 'bol', 'BolC8t52538H' => 'bol', 'BolC8t52539H' => 'bol', 'BolC9t56681H' => 'bol', 'BolC9t58266H' => 'bol', 'BolSC21t60294H' => 'bol', 'BraA02t05670Z' => 'bra', 'BraA03t12716Z' => 'bra', 'BraA04t17685Z' => 'bra', 'BraA05t22788Z' => 'bra', 'BraA06t24032Z' => 'bra', 'BraA06t25625Z' => 'bra', 'BraA07t27930Z' => 'bra', 'BraA08t35242Z' => 'bra', 'BraA09t38609Z' => 'bra', 'BraA10t43905Z' => 'bra', 'C02p11060' => 'bna', 'C03p42990' => 'bna', 'C03p67310' => 'bna', 'C04p56990' => 'bna', 'C04p58660' => 'bna', 'C05p09890' => 'bna', 'C05p59680' => 'bna', 'C06p19830' => 'bna', 'C06p53040' => 'bna', 'C07p15230' => 'bna', 'C08p50070' => 'bna', 'C08p50090' => 'bna', 'C09p38330' => 'bna', 'C09p53940' => 'bna', 'CAN.G1014.1' => 'can', 'CAN.G644.30' => 'can', 'CAN.G84.47' => 'can', 'CAN.G919.8' => 'can', 'CANSAT54G0113' => 'cansat', 'CANSAT54G1286' => 'cansat', 'CANSAT64G1020' => 'cansat', 'CARHR008080' => 'chi', 'CARHR008090' => 'chi', 'CARHR012130' => 'chi', 'CARHR038390' => 'chi', 'CARHR082330' => 'chi', 'CARHR120520' => 'chi', 'CARHR151470' => 'chi', 'CARHR190950' => 'chi', 'Carub.0001s0760' => 'cru', 'Carub.0001s1146' => 'cru', 'Carub.0003s0721' => 'cru', 'Carub.0004s0858' => 'cru', 'Carub.0005s1040' => 'cru', 'Carub.0006s2035' => 'cru', 'Carub.0015s0005' => 'cru', 'Ca_01607_v3' => 'car', 'Ca_01677_v3' => 'car', 'Ca_06087_v3' => 'car', 'Ca_19238_v3' => 'car', 'Ca_19373_v3' => 'car', 'Ca_21079_v3' => 'car', 'CBR_g54016' => 'cbr', 'CBR_g54018' => 'cbr', 'CBR_g54020' => 'cbr', 'Cc01_g09780' => 'ccan', 'Cc01_g11680' => 'ccan', 'Cc02_g15610' => 'ccan', 'Cc05_g04350' => 'ccan', 'Cc09_g01580' => 'ccan', 'CDE01G0795' => 'cde', 'CDE02G2024' => 'cde', 'CDE02G2260' => 'cde', 'CDE02G4561' => 'cde', 'CDE05G2733' => 'cde', 'CDE05G3422' => 'cde', 'CDE06G2003' => 'cde', 'CDE08G0576' => 'cde', 'CDE09G0048' => 'cde', 'CDE11G0805' => 'cde', 'Cfa003644' => 'cfa', 'Cfa006290' => 'cfa', 'Cfa010080' => 'cfa', 'Cfa011376' => 'cfa', 'Cfa011576' => 'cfa', 'Cfa011577' => 'cfa', 'Cfa014389' => 'cfa', 'Ciclev10006044m.g' => 'ccl', 'Ciclev10006954m.g' => 'ccl', 'Ciclev10015131m.g' => 'ccl', 'Ciclev10015580m.g' => 'ccl', 'Ciclev10028359m.g' => 'ccl', 'Ciclev10028573m.g' => 'ccl', 'CiPaw.03G159300' => 'cil', 'CiPaw.04G115100' => 'cil', 'CiPaw.09G092800' => 'cil', 'CiPaw.10G071800' => 'cil', 'CiPaw.13G105800' => 'cil', 'CiPaw.13G141000' => 'cil', 'CiPaw.14G103400' => 'cil', 'ClCG01G012700' => 'cla', 'ClCG01G012720' => 'cla', 'ClCG01G021920' => 'cla', 'ClCG02G008870' => 'cla', 'ClCG02G020840' => 'cla', 'ClCG02G021930' => 'cla', 'COL.COLO4_19302' => 'col', 'COL.COLO4_25262' => 'col', 'COL.COLO4_31788' => 'col', 'Cpa.g.c34684' => 'cpa', 'Cpa.g.c36520.1' => 'cpa', 'Cpa.g.c45626' => 'cpa', 'Cpa.g.sc121.17' => 'cpa', 'Cpa.g.sc13.22' => 'cpa', 'Cpa.g.sc87.88' => 'cpa', 'Cre06.g261800' => 'cre', 'CsaV3_1G014500' => 'csa', 'CsaV3_1G014510' => 'csa', 'CsaV3_2G034880' => 'csa', 'CsaV3_6G014760' => 'csa', 'CsaV3_6G021500' => 'csa', 'CsaV3_6G048980' => 'csa', 'CSS0002511' => 'camsi', 'CSS0007556' => 'camsi', 'CSS0008532' => 'camsi', 'CSS0009709' => 'camsi', 'CSS0010486' => 'camsi', 'CSS0016768' => 'camsi', 'CSS0023512' => 'camsi', 'CSS0025341' => 'camsi', 'CSS0027999' => 'camsi', 'CSS0028944' => 'camsi', 'CSS0032292' => 'camsi', 'CSS0032464' => 'camsi', 'CSS0037153' => 'camsi', 'CSS0039256' => 'camsi', 'CSS0048392' => 'camsi', 'CSS0050458' => 'camsi', 'DCAR_004224' => 'dca', 'DCAR_006147' => 'dca', 'DCAR_006465' => 'dca', 'DCAR_008159' => 'dca', 'DCAR_012164' => 'dca', 'DCAR_019764' => 'dca', 'Dinv05418' => 'din', 'Dinv10839' => 'din', 'Dinv12521' => 'din', 'Dinv13900' => 'din', 'Dinv29426' => 'din', 'Duzib150G0263' => 'dzi', 'Duzib168G1178' => 'dzi', 'Duzib168G1924' => 'dzi', 'Duzib170G0299' => 'dzi', 'Duzib170G0813' => 'dzi', 'Duzib235G1128' => 'dzi', 'Duzib248G1060' => 'dzi', 'ECA232G1910' => 'eca', 'ECA233G4621' => 'eca', 'ECA238G1216' => 'eca', 'ECA238G1784' => 'eca', 'ECA248G1242' => 'eca', 'EL10Ac8g20071' => 'bvu', 'EL10Ac9g21086' => 'bvu', 'EL10Ac9g22407' => 'bvu', 'EL10Ac9g22412' => 'bvu', 'Eucgr.A01119' => 'egr', 'Eucgr.E04043' => 'egr', 'Eucgr.J00428' => 'egr', 'Eucgr.J00958' => 'egr', 'FAN11G3091' => 'fan', 'FAN11G3651' => 'fan', 'FAN16G2566' => 'fan', 'FAN21G3155' => 'fan', 'FAN21G3400' => 'fan', 'FAN21G3543' => 'fan', 'FAN25G0234' => 'fan', 'FAN25G1422' => 'fan', 'FAN25G3392' => 'fan', 'FvH4_3g01940' => 'fve', 'FvH4_3g29870' => 'fve', 'FvH4_3g33680' => 'fve', 'Glyma.09G004200' => 'gma', 'Glyma.11G151288' => 'gma', 'Glyma.11G189100' => 'gma', 'Glyma.12G072500' => 'gma', 'Glyma.12G085500' => 'gma', 'Glyma.12G181800' => 'gma', 'Glyma.12G193000' => 'gma', 'Glyma.13G309300' => 'gma', 'Glyma.13G319000' => 'gma', 'Glyma.17G012600' => 'gma', 'Gohir.A06G148600' => 'ghi', 'Gohir.A07G115800' => 'ghi', 'Gohir.A08G003600' => 'ghi', 'Gohir.A09G093300' => 'ghi', 'Gohir.A09G105400' => 'ghi', 'Gohir.A09G105500' => 'ghi', 'Gohir.D06G154600' => 'ghi', 'Gohir.D07G120200' => 'ghi', 'Gohir.D08G013900' => 'ghi', 'Gohir.D09G093100' => 'ghi', 'Gohir.D09G102200' => 'ghi', 'Gohir.D09G102300' => 'ghi', 'Gorai.001G129400' => 'gra', 'Gorai.004G008200' => 'gra', 'Gorai.006G109800' => 'gra', 'Gorai.006G119500' => 'gra', 'Gorai.006G121300' => 'gra', 'Gorai.010G180700' => 'gra', 'GSVIVG01012716001' => 'vvi', 'GSVIVG01025118001' => 'vvi', 'GSVIVG01030439001' => 'vvi', 'GSVIVG01031397001' => 'vvi', 'HanXRQChr01g0004201' => 'han', 'HanXRQChr02g0054941' => 'han', 'HanXRQChr05g0141811' => 'han', 'HanXRQChr07g0197751' => 'han', 'HanXRQChr11g0346691' => 'han', 'HanXRQChr13g0396971' => 'han', 'HanXRQChr14g0432951' => 'han', 'HanXRQChr14g0452001' => 'han', 'HanXRQChr15g0496681' => 'han', 'HanXRQChr17g0557491' => 'han', 'HanXRQChr17g0557501' => 'han', 'Haze_06809' => 'cav', 'Haze_12852' => 'cav', 'Haze_15850' => 'cav', 'Haze_23446' => 'cav', 'Haze_23942' => 'cav', 'Haze_23943' => 'cav', 'Hma1.2p1_0091F.1_g046450' => 'hma', 'Hma1.2p1_0128F.1_g059910' => 'hma', 'Hma1.2p1_0249F.1_g102260' => 'hma', 'Hma1.2p1_0453F.1_g156190' => 'hma', 'Hma1.2p1_0695F.1_g204380' => 'hma', 'Hma1.2p1_0749F.1_g212650' => 'hma', 'Hma1.2p1_2156F.1_g315420' => 'hma', 'Hma1.2p1_2686F.1_g326940' => 'hma', 'HPP92_006428' => 'vpl', 'HPP92_012069' => 'vpl', 'HPP92_014129' => 'vpl', 'HPP92_014133' => 'vpl', 'HPP92_017315' => 'vpl', 'HPP92_026445' => 'vpl', 'HPP92_026446' => 'vpl', 'Hund00774' => 'sun', 'Hund07682' => 'sun', 'Hund21413' => 'sun', 'Hund23462' => 'sun', 'Hund23463' => 'sun', 'Lalb_Chr03g0027911' => 'lal', 'Lalb_Chr13g0304271' => 'lal', 'Lalb_Chr19g0137471' => 'lal', 'Lalb_Chr22g0350651' => 'lal', 'Lalb_Chr24g0395151' => 'lal', 'Lj1A1231T40' => 'lonja', 'Lj1A221T48' => 'lonja', 'Lj1C924T12' => 'lonja', 'Lj2C993G6' => 'lonja', 'Lj3g0005790' => 'lja', 'Lj3g0015432' => 'lja', 'Lj3g0017722' => 'lja', 'Lj3g0018497' => 'lja', 'Lj4g0025071' => 'lja', 'Lsat_1_v5_gn_1_129680' => 'lsa', 'Lsat_1_v5_gn_2_25321' => 'lsa', 'Lsat_1_v5_gn_2_95461' => 'lsa', 'Lsat_1_v5_gn_4_159620' => 'lsa', 'Lsat_1_v5_gn_6_41301' => 'lsa', 'Lsat_1_v5_gn_6_74660' => 'lsa', 'Lsat_1_v5_gn_7_11520' => 'lsa', 'Lsat_1_v5_gn_9_67680' => 'lsa', 'Manes.04G008300' => 'mes', 'Manes.04G008400' => 'mes', 'Manes.04G026500' => 'mes', 'Manes.10G135300' => 'mes', 'Manes.11G157300' => 'mes', 'Manes.12G074000' => 'mes', 'Manes.16G006200' => 'mes', 'Manes.17G026400' => 'mes', 'Mapoly0024s0086' => 'mpo', 'Mapoly0024s0087' => 'mpo', 'Mapoly0071s0057' => 'mpo', 'Mapoly0204s0012' => 'mpo', 'MBI04_g37681_MAGBIO' => 'mbi', 'MBI05_g17779_MAGBIO' => 'mbi', 'MBI12_g31184_MAGBIO' => 'mbi', 'MBI17_g11083_MAGBIO' => 'mbi', 'MBI18_g03883_MAGBIO' => 'mbi', 'MBI18_g28940_MAGBIO' => 'mbi', 'MCO01G690' => 'mco', 'MD03G1109900' => 'mdo', 'MD03G1134800' => 'mdo', 'MD05G1348000' => 'mdo', 'MD10G1322400' => 'mdo', 'MD11G1123300' => 'mdo', 'MD11G1157600' => 'mdo', 'Medtr2g084875' => 'mtr', 'Medtr2g088130' => 'mtr', 'Medtr4g055310' => 'mtr', 'Medtr4g061070' => 'mtr', 'Medtr4g132250' => 'mtr', 'MELO3C004795.2' => 'cme', 'MELO3C004797.2' => 'cme', 'MELO3C007396.2' => 'cme', 'MELO3C019277.2' => 'cme', 'MELO3C021449.2' => 'cme', 'MELO3C025736.2' => 'cme', 'Migut.D02175' => 'egut', 'Migut.H01573' => 'egut', 'Migut.M01327' => 'egut', 'Migut.N02513' => 'egut', 'MSTRG.14638' => 'ama', 'MSTRG.18632' => 'ama', 'MSTRG.7203' => 'ama', 'Nitab4.5_0000533g0140' => 'nta', 'Nitab4.5_0000888g0150' => 'nta', 'Nitab4.5_0001453g0040' => 'nta', 'Nitab4.5_0002827g0090' => 'nta', 'Nitab4.5_0003082g0040' => 'nta', 'Nitab4.5_0007799g0040' => 'nta', 'Nitab4.5_0008983g0010' => 'nta', 'Nitab4.5_0009017g0020' => 'nta', 'Nn1g02132' => 'nnu', 'Nn1g03492' => 'nnu', 'Nn1g03493' => 'nnu', 'Nn1g03494' => 'nnu', 'Nn1g07164' => 'nnu', 'Nn1g07291' => 'nnu', 'Nn2g10655' => 'nnu', 'Nn2g11652' => 'nnu', 'Nn2g14008' => 'nnu', 'Nn3g17476' => 'nnu', 'Nn3g17477' => 'nnu', 'Nn4g22370' => 'nnu', 'Nn4g25255' => 'nnu', 'Nn5g27755' => 'nnu', 'Nn6g34260' => 'nnu', 'Nn6g35041' => 'nnu', 'Oeu005924.1' => 'oeu', 'Oeu008383.1' => 'oeu', 'Oeu014928.1' => 'oeu', 'Oeu019889.1' => 'oeu', 'Oeu022271.1' => 'oeu', 'Oeu025271.1' => 'oeu', 'Oeu036302.1' => 'oeu', 'Oeu044100.1' => 'oeu', 'Os01g0528300' => 'osa', 'Os03g0286200' => 'osa', 'Os04g0406600' => 'osa', 'Os07g0512000' => 'osa', 'Os07g0694600' => 'osa', 'Os08g0411000' => 'osa', 'Os09g0565700' => 'osa', 'Os09g0566050' => 'osa', 'Os10g0523700' => 'osa', 'Peaxi162Scf00002g00514' => 'pax', 'Peaxi162Scf00047g01817' => 'pax', 'Peaxi162Scf00114g00001' => 'pax', 'Peaxi162Scf00147g00613' => 'pax', 'Peaxi162Scf00389g00425' => 'pax', 'PGR042G1139' => 'pgr', 'PGR042G3273' => 'pgr', 'PGR102G2180' => 'pgr', 'PGR119G0234' => 'pgr', 'PGR119G0668' => 'pgr', 'PGSC0003DMG400007122' => 'stu', 'PGSC0003DMG400016478' => 'stu', 'PGSC0003DMG400025374' => 'stu', 'PGSC0003DMG400026536' => 'stu', 'Phvul.003G079600' => 'pvu', 'Phvul.005G115600' => 'pvu', 'Phvul.005G127100' => 'pvu', 'Phvul.006G149500' => 'pvu', 'Phvul.006G149600' => 'pvu', 'Phvul.011G071800' => 'pvu', 'Phvul.011G090400' => 'pvu', 'Potri.004G013400' => 'ptr', 'Potri.004G188100' => 'ptr', 'Potri.008G195500' => 'ptr', 'Potri.009G148800' => 'ptr', 'Potri.011G004700' => 'ptr', 'Pp3c17_22810' => 'ppa', 'Pp3c18_4480' => 'ppa', 'Pp3c19_13030' => 'ppa', 'Pp3c1_33620' => 'ppa', 'Pp3c2_9380' => 'ppa', 'PRCOL_00001023' => 'pco', 'Prupe.3G216300' => 'ppe', 'Prupe.4G019500' => 'ppe', 'Prupe.6G092500' => 'ppe', 'Prupe.6G119200' => 'ppe', 'Psat0s1945g0080' => 'psa', 'Psat0s4167g0040' => 'psa', 'Psat1g185800' => 'psa', 'Psat4g006440' => 'psa', 'Psat4g006480' => 'psa', 'Psat4g168120' => 'psa', 'Psat5g255680' => 'psa', 'Psat5g261760' => 'psa', 'Psat7g222120' => 'psa', 'PSO063G7252' => 'pso', 'PSO170G4778' => 'pso', 'PSO210G2249' => 'pso', 'PSO339G2411' => 'pso', 'PSO339G2457' => 'pso', 'PSO339G2854' => 'pso', 'PSO339G4288' => 'pso', 'PSO339G4615' => 'pso', 'PSO384G2796' => 'pso', 'PSO384G2940' => 'pso', 'PSO384G4227' => 'pso', 'PSO478G1425' => 'pso', 'PSO541G3863' => 'pso', 'PSO675G0507' => 'pso', 'PSO782G0338' => 'pso', 'PSO832G0644' => 'pso', 'QL01p013664' => 'qlo', 'QL01p036598' => 'qlo', 'QL05p072984' => 'qlo', 'QL08p005768' => 'qlo', 'QL08p032743' => 'qlo', 'QL93p0073_0439' => 'qlo', 'QL93p0073_0444' => 'qlo', 'RcHm_v2.0_Chr5g0002851' => 'rch', 'RcHm_v2.0_Chr5g0055201' => 'rch', 'RcHm_v2.0_Chr5g0061191' => 'rch', 'RcHm_v2.0_Chr7g0203231' => 'rch', 'Rhsim01G0208100' => 'rsi', 'Rhsim01G0208200' => 'rsi', 'Rhsim02G0106500' => 'rsi', 'Rhsim03G0107900' => 'rsi', 'Rhsim06G0163400' => 'rsi', 'Rhsim13G0105200' => 'rsi', 'Sabra04G0006300' => 'sbr', 'Sabra04G0127000' => 'sbr', 'Sabra08G0148700' => 'sbr', 'Sabra09G0117400' => 'sbr', 'SalBow1G3326' => 'sbo', 'SalBow3G3228' => 'sbo', 'SalBow6G1634' => 'sbo', 'SalBow6G3603' => 'sbo', 'SalBow6G5266' => 'sbo', 'SalBow7G2265' => 'sbo', 'SalBow8G0850' => 'sbo', 'SalBow8G2592' => 'sbo', 'Sc05g0009240' => 'sci', 'Sc12g0002300' => 'sci', 'Sc21g0000100' => 'sci', 'Sc21g0004720' => 'sci', 'Sed0002949' => 'sed', 'Sed0004114' => 'sed', 'Sed0004306' => 'sed', 'Sed0006172' => 'sed', 'Sed0008413' => 'sed', 'Sed0013809' => 'sed', 'Sed0019556' => 'sed', 'SEGI_03570' => 'sgi', 'SEGI_07859' => 'sgi', 'SEGI_15042' => 'sgi', 'SEGI_16263' => 'sgi', 'SEGI_16552' => 'sgi', 'SEGI_24331' => 'sgi', 'SEGI_27316' => 'sgi', 'SEGI_29521' => 'sgi', 'SEGI_41342' => 'sgi', 'SGA_v2.0_scaffold27G11617' => 'sas', 'SGA_v2.0_scaffold316G48428' => 'sas', 'SGA_v2.0_scaffold49G18261' => 'sas', 'SGA_v2.0_scaffold7G03831' => 'sas', 'SGA_v2.0_scaffold93G28359' => 'sas', 'SHI02210' => 'shi', 'SHI06028' => 'shi', 'SHI06321' => 'shi', 'SMO111G0012' => 'smo', 'SMO228G0080' => 'smo', 'SMO356G0756' => 'smo', 'Solyc02g080620.3' => 'sly', 'Solyc06g074530.1' => 'sly', 'Solyc11g066890.1' => 'sly', 'Solyc11g072520.3' => 'sly', 'Sopen02g025330' => 'spe', 'Sopen06g031000' => 'spe', 'Sopen09g008240' => 'spe', 'Sopen09g025210' => 'spe', 'Sopen11g026600' => 'spe', 'Sopen11g030170' => 'spe', 'Sp1g10420' => 'spa', 'Sp3g06570' => 'spa', 'Sp4g10660' => 'spa', 'Sp5g16460' => 'spa', 'Sp6g22710' => 'spa', 'TAR365G0112' => 'tar', 'TAR369G0717' => 'tar', 'TAR374G0976' => 'tar', 'TAR623G1128' => 'tar', 'TAR626G1937' => 'tar', 'TAR627G0123' => 'tar', 'TAR628G0305' => 'tar', 'TAR636G1176' => 'tar', 'TAR636G2442' => 'tar', 'THA.LOC104800556' => 'tha', 'THA.LOC104809501' => 'tha', 'THA.LOC104815126' => 'tha', 'THA.LOC104815732' => 'tha', 'THA.LOC104823528' => 'tha', 'Thecc.02G365600' => 'tca', 'Thecc.06G222300' => 'tca', 'Thecc.09G261800' => 'tca', 'Thecc.09G291400' => 'tca', 'Thhalv10003028m.g' => 'esa', 'Thhalv10007886m.g' => 'esa', 'Thhalv10016085m.g' => 'esa', 'Thhalv10016681m.g' => 'esa', 'Thhalv10020951m.g' => 'esa', 'TPR.G15598' => 'tpr', 'TPR.G29305' => 'tpr', 'TPR.G32395' => 'tpr', 'TPR.G36998' => 'tpr', 'TPR.G4227' => 'tpr', 'TWI18G1433' => 'twi', 'TWI31G0755' => 'twi', 'TWI38G0912' => 'twi', 'TWI75G1097' => 'twi', 'TWI75G1619' => 'twi', 'TWI79G1336' => 'twi', 'unitig_0.g943' => 'ugi', 'unitig_0.g944' => 'ugi', 'unitig_22.g6646' => 'ugi', 'unitig_37.g12681' => 'ugi', 'unitig_8.g3290' => 'ugi', 'vmacro03278' => 'vma', 'vmacro12197' => 'vma', 'vmacro14478' => 'vma', 'vmacro15787' => 'vma', 'vmacro15789' => 'vma', 'vmacro15790' => 'vma', 'vmacro15806' => 'vma', 'vmacro22907' => 'vma', 'vmacro22908' => 'vma', 'vmacro22909' => 'vma', 'vmacro23108' => 'vma', 'VMungo0540G0540' => 'vmu', 'VMungo0540G2468' => 'vmu', 'VMungo1080G0390' => 'vmu', 'VMungo1080G1165' => 'vmu', 'VMungo1127G0170' => 'vmu', 'VMungo1127G2099' => 'vmu', 'VMungo1215G3013' => 'vmu', 'Zm00001eb013110' => 'zma', 'Zm00001eb084260' => 'zma', 'Zm00001eb096110' => 'zma', 'Zm00001eb217510' => 'zma', 'Zm00001eb322550' => 'zma', 'Zm00001eb390770' => 'zma', 'Zm00001eb397170' => 'zma', 'Zm00001eb404610' => 'zma', 'Zm00001eb421790' => 'zma' ) $gf_id = 'HOM05D000911' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000911' ) $data_identifier = 'HOM05D000911' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 16, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 5, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 6, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 8, 'nnu' => (int) 16, 'oeu' => (int) 8, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 5, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 16, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421790' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000911', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27780' => 'bna', 'A03p35380' => 'bna', 'A04p21160' => 'bna', 'A05p40570' => 'bna', 'A06p26900' => 'bna', 'A08p33230' => 'bna', 'A09p65960' => 'bna', 'A10p18290' => 'bna', 'Aa31LG1G12990' => 'aar', 'Aa31LG1G2980' => 'aar', 'Aa31LG4G14320' => 'aar', 'Aa31LG7G11800' => 'aar', 'Aa31sc36G50' => 'aar', 'Aa31sc36G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3721' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5459' => 'aag', 'Actinidia03028' => 'ach', 'Actinidia03753' => 'ach', 'Actinidia04187' => 'ach', 'Actinidia05509' => 'ach', 'Actinidia24180' => 'ach', 'Actinidia26906' => 'ach', 'Actinidia37097' => 'ach', 'Actinidia38249' => 'ach', 'Ah.01g003470' => 'amhyb', 'Ah.01g004580' => 'amhyb', 'Ah.01g014850' => 'amhyb', 'Ah.01g016830' => 'amhyb', 'Ah.14g088000' => 'amhyb', 'AL1G22980' => 'aly', 'AL3G18990' => 'aly', 'AL4G22440' => 'aly', 'AL4G33180' => 'aly', 'AL5G22920' => 'aly', 'AL6G33660' => 'aly', 'AL8G20720' => 'aly', 'Aqoxy1G00935' => 'aox', 'Aqoxy1G02094' => 'aox', 'Aqoxy2G01239' => 'aox', 'Aqoxy4G01870' => 'aox', 'Aqoxy7G00450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.36ZVTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71EM27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5D6C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH3WRE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3NCM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RIM768' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YB5YRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z36GDV' => 'arhy', 'AT1G08250' => 'ath', 'AT1G11790' => 'ath', 'AT2G27820' => 'ath', 'AT3G07630' => 'ath', 'AT3G44720' => 'ath', 'AT5G22630' => 'ath', 'ATR0693G304' => 'atr', 'ATR0794G109' => 'atr', 'ATR0820G120' => 'atr', 'ATR1159G064' => 'atr', 'Atru.chr10.2239' => 'acertr', 'Atru.chr3.3371' => 'acertr', 'Atru.chr6.3202' => 'acertr', 'AUR62006499' => 'cqu', 'AUR62012718' => 'cqu', 'AUR62021938' => 'cqu', 'AUR62023932' => 'cqu', 'AUR62025034' => 'cqu', 'AUR62025035' => 'cqu', 'AUR62038307' => 'cqu', 'AUR62043466' => 'cqu', 'BcaB02g10748' => 'bca', 'BcaB03g13231' => 'bca', 'BcaB03g14689' => 'bca', 'BcaB05g22716' => 'bca', 'BcaB06g28172' => 'bca', 'BcaB08g36413' => 'bca', 'BcaC01g02186' => 'bca', 'BcaC01g04272' => 'bca', 'BcaC02g08080' => 'bca', 'BcaC02g08227' => 'bca', 'BcaC03g13901' => 'bca', 'BcaC04g19593' => 'bca', 'BcaC04g20874' => 'bca', 'BcaC05g29557' => 'bca', 'BcaC06g35505' => 'bca', 'BcaC07g41954' => 'bca', 'BcaC07g41955' => 'bca', 'BcaC07g41956' => 'bca', 'BcaC07g42519' => 'bca', 'BcaC07g42520' => 'bca', 'BcaC07g42523' => 'bca', 'BcaC07g42524' => 'bca', 'BcaC07g42525' => 'bca', 'BcaC08g47480' => 'bca', 'BcaC08g47481' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00530' => 'bna', 'BolC2t07178H' => 'bol', 'BolC3t16567H' => 'bol', 'BolC4t27234H' => 'bol', 'BolC5t29728H' => 'bol', 'BolC5t34622H' => 'bol', 'BolC6t40321H' => 'bol', 'BolC7t42028H' => 'bol', 'BolC8t49125H' => 'bol', 'BolC8t52538H' => 'bol', 'BolC8t52539H' => 'bol', 'BolC9t56681H' => 'bol', 'BolC9t58266H' => 'bol', 'BolSC21t60294H' => 'bol', 'BraA02t05670Z' => 'bra', 'BraA03t12716Z' => 'bra', 'BraA04t17685Z' => 'bra', 'BraA05t22788Z' => 'bra', 'BraA06t24032Z' => 'bra', 'BraA06t25625Z' => 'bra', 'BraA07t27930Z' => 'bra', 'BraA08t35242Z' => 'bra', 'BraA09t38609Z' => 'bra', 'BraA10t43905Z' => 'bra', 'C02p11060' => 'bna', 'C03p42990' => 'bna', 'C03p67310' => 'bna', 'C04p56990' => 'bna', 'C04p58660' => 'bna', 'C05p09890' => 'bna', 'C05p59680' => 'bna', 'C06p19830' => 'bna', 'C06p53040' => 'bna', 'C07p15230' => 'bna', 'C08p50070' => 'bna', 'C08p50090' => 'bna', 'C09p38330' => 'bna', 'C09p53940' => 'bna', 'CAN.G1014.1' => 'can', 'CAN.G644.30' => 'can', 'CAN.G84.47' => 'can', 'CAN.G919.8' => 'can', 'CANSAT54G0113' => 'cansat', 'CANSAT54G1286' => 'cansat', 'CANSAT64G1020' => 'cansat', 'CARHR008080' => 'chi', 'CARHR008090' => 'chi', 'CARHR012130' => 'chi', 'CARHR038390' => 'chi', 'CARHR082330' => 'chi', 'CARHR120520' => 'chi', 'CARHR151470' => 'chi', 'CARHR190950' => 'chi', 'Carub.0001s0760' => 'cru', 'Carub.0001s1146' => 'cru', 'Carub.0003s0721' => 'cru', 'Carub.0004s0858' => 'cru', 'Carub.0005s1040' => 'cru', 'Carub.0006s2035' => 'cru', 'Carub.0015s0005' => 'cru', 'Ca_01607_v3' => 'car', 'Ca_01677_v3' => 'car', 'Ca_06087_v3' => 'car', 'Ca_19238_v3' => 'car', 'Ca_19373_v3' => 'car', 'Ca_21079_v3' => 'car', 'CBR_g54016' => 'cbr', 'CBR_g54018' => 'cbr', 'CBR_g54020' => 'cbr', 'Cc01_g09780' => 'ccan', 'Cc01_g11680' => 'ccan', 'Cc02_g15610' => 'ccan', 'Cc05_g04350' => 'ccan', 'Cc09_g01580' => 'ccan', 'CDE01G0795' => 'cde', 'CDE02G2024' => 'cde', 'CDE02G2260' => 'cde', 'CDE02G4561' => 'cde', 'CDE05G2733' => 'cde', 'CDE05G3422' => 'cde', 'CDE06G2003' => 'cde', 'CDE08G0576' => 'cde', 'CDE09G0048' => 'cde', 'CDE11G0805' => 'cde', 'Cfa003644' => 'cfa', 'Cfa006290' => 'cfa', 'Cfa010080' => 'cfa', 'Cfa011376' => 'cfa', 'Cfa011576' => 'cfa', 'Cfa011577' => 'cfa', 'Cfa014389' => 'cfa', 'Ciclev10006044m.g' => 'ccl', 'Ciclev10006954m.g' => 'ccl', 'Ciclev10015131m.g' => 'ccl', 'Ciclev10015580m.g' => 'ccl', 'Ciclev10028359m.g' => 'ccl', 'Ciclev10028573m.g' => 'ccl', 'CiPaw.03G159300' => 'cil', 'CiPaw.04G115100' => 'cil', 'CiPaw.09G092800' => 'cil', 'CiPaw.10G071800' => 'cil', 'CiPaw.13G105800' => 'cil', 'CiPaw.13G141000' => 'cil', 'CiPaw.14G103400' => 'cil', 'ClCG01G012700' => 'cla', 'ClCG01G012720' => 'cla', 'ClCG01G021920' => 'cla', 'ClCG02G008870' => 'cla', 'ClCG02G020840' => 'cla', 'ClCG02G021930' => 'cla', 'COL.COLO4_19302' => 'col', 'COL.COLO4_25262' => 'col', 'COL.COLO4_31788' => 'col', 'Cpa.g.c34684' => 'cpa', 'Cpa.g.c36520.1' => 'cpa', 'Cpa.g.c45626' => 'cpa', 'Cpa.g.sc121.17' => 'cpa', 'Cpa.g.sc13.22' => 'cpa', 'Cpa.g.sc87.88' => 'cpa', 'Cre06.g261800' => 'cre', 'CsaV3_1G014500' => 'csa', 'CsaV3_1G014510' => 'csa', 'CsaV3_2G034880' => 'csa', 'CsaV3_6G014760' => 'csa', 'CsaV3_6G021500' => 'csa', 'CsaV3_6G048980' => 'csa', 'CSS0002511' => 'camsi', 'CSS0007556' => 'camsi', 'CSS0008532' => 'camsi', 'CSS0009709' => 'camsi', 'CSS0010486' => 'camsi', 'CSS0016768' => 'camsi', 'CSS0023512' => 'camsi', 'CSS0025341' => 'camsi', 'CSS0027999' => 'camsi', 'CSS0028944' => 'camsi', 'CSS0032292' => 'camsi', 'CSS0032464' => 'camsi', 'CSS0037153' => 'camsi', 'CSS0039256' => 'camsi', 'CSS0048392' => 'camsi', 'CSS0050458' => 'camsi', 'DCAR_004224' => 'dca', 'DCAR_006147' => 'dca', 'DCAR_006465' => 'dca', 'DCAR_008159' => 'dca', 'DCAR_012164' => 'dca', 'DCAR_019764' => 'dca', 'Dinv05418' => 'din', 'Dinv10839' => 'din', 'Dinv12521' => 'din', 'Dinv13900' => 'din', 'Dinv29426' => 'din', 'Duzib150G0263' => 'dzi', 'Duzib168G1178' => 'dzi', 'Duzib168G1924' => 'dzi', 'Duzib170G0299' => 'dzi', 'Duzib170G0813' => 'dzi', 'Duzib235G1128' => 'dzi', 'Duzib248G1060' => 'dzi', 'ECA232G1910' => 'eca', 'ECA233G4621' => 'eca', 'ECA238G1216' => 'eca', 'ECA238G1784' => 'eca', 'ECA248G1242' => 'eca', 'EL10Ac8g20071' => 'bvu', 'EL10Ac9g21086' => 'bvu', 'EL10Ac9g22407' => 'bvu', 'EL10Ac9g22412' => 'bvu', 'Eucgr.A01119' => 'egr', 'Eucgr.E04043' => 'egr', 'Eucgr.J00428' => 'egr', 'Eucgr.J00958' => 'egr', 'FAN11G3091' => 'fan', 'FAN11G3651' => 'fan', 'FAN16G2566' => 'fan', 'FAN21G3155' => 'fan', 'FAN21G3400' => 'fan', 'FAN21G3543' => 'fan', 'FAN25G0234' => 'fan', 'FAN25G1422' => 'fan', 'FAN25G3392' => 'fan', 'FvH4_3g01940' => 'fve', 'FvH4_3g29870' => 'fve', 'FvH4_3g33680' => 'fve', 'Glyma.09G004200' => 'gma', 'Glyma.11G151288' => 'gma', 'Glyma.11G189100' => 'gma', 'Glyma.12G072500' => 'gma', 'Glyma.12G085500' => 'gma', 'Glyma.12G181800' => 'gma', 'Glyma.12G193000' => 'gma', 'Glyma.13G309300' => 'gma', 'Glyma.13G319000' => 'gma', 'Glyma.17G012600' => 'gma', 'Gohir.A06G148600' => 'ghi', 'Gohir.A07G115800' => 'ghi', 'Gohir.A08G003600' => 'ghi', 'Gohir.A09G093300' => 'ghi', 'Gohir.A09G105400' => 'ghi', 'Gohir.A09G105500' => 'ghi', 'Gohir.D06G154600' => 'ghi', 'Gohir.D07G120200' => 'ghi', 'Gohir.D08G013900' => 'ghi', 'Gohir.D09G093100' => 'ghi', 'Gohir.D09G102200' => 'ghi', 'Gohir.D09G102300' => 'ghi', 'Gorai.001G129400' => 'gra', 'Gorai.004G008200' => 'gra', 'Gorai.006G109800' => 'gra', 'Gorai.006G119500' => 'gra', 'Gorai.006G121300' => 'gra', 'Gorai.010G180700' => 'gra', 'GSVIVG01012716001' => 'vvi', 'GSVIVG01025118001' => 'vvi', 'GSVIVG01030439001' => 'vvi', 'GSVIVG01031397001' => 'vvi', 'HanXRQChr01g0004201' => 'han', 'HanXRQChr02g0054941' => 'han', 'HanXRQChr05g0141811' => 'han', 'HanXRQChr07g0197751' => 'han', 'HanXRQChr11g0346691' => 'han', 'HanXRQChr13g0396971' => 'han', 'HanXRQChr14g0432951' => 'han', 'HanXRQChr14g0452001' => 'han', 'HanXRQChr15g0496681' => 'han', 'HanXRQChr17g0557491' => 'han', 'HanXRQChr17g0557501' => 'han', 'Haze_06809' => 'cav', 'Haze_12852' => 'cav', 'Haze_15850' => 'cav', 'Haze_23446' => 'cav', 'Haze_23942' => 'cav', 'Haze_23943' => 'cav', 'Hma1.2p1_0091F.1_g046450' => 'hma', 'Hma1.2p1_0128F.1_g059910' => 'hma', 'Hma1.2p1_0249F.1_g102260' => 'hma', 'Hma1.2p1_0453F.1_g156190' => 'hma', 'Hma1.2p1_0695F.1_g204380' => 'hma', 'Hma1.2p1_0749F.1_g212650' => 'hma', 'Hma1.2p1_2156F.1_g315420' => 'hma', 'Hma1.2p1_2686F.1_g326940' => 'hma', 'HPP92_006428' => 'vpl', 'HPP92_012069' => 'vpl', 'HPP92_014129' => 'vpl', 'HPP92_014133' => 'vpl', 'HPP92_017315' => 'vpl', 'HPP92_026445' => 'vpl', 'HPP92_026446' => 'vpl', 'Hund00774' => 'sun', 'Hund07682' => 'sun', 'Hund21413' => 'sun', 'Hund23462' => 'sun', 'Hund23463' => 'sun', 'Lalb_Chr03g0027911' => 'lal', 'Lalb_Chr13g0304271' => 'lal', 'Lalb_Chr19g0137471' => 'lal', 'Lalb_Chr22g0350651' => 'lal', 'Lalb_Chr24g0395151' => 'lal', 'Lj1A1231T40' => 'lonja', 'Lj1A221T48' => 'lonja', 'Lj1C924T12' => 'lonja', 'Lj2C993G6' => 'lonja', 'Lj3g0005790' => 'lja', 'Lj3g0015432' => 'lja', 'Lj3g0017722' => 'lja', 'Lj3g0018497' => 'lja', 'Lj4g0025071' => 'lja', 'Lsat_1_v5_gn_1_129680' => 'lsa', 'Lsat_1_v5_gn_2_25321' => 'lsa', 'Lsat_1_v5_gn_2_95461' => 'lsa', 'Lsat_1_v5_gn_4_159620' => 'lsa', 'Lsat_1_v5_gn_6_41301' => 'lsa', 'Lsat_1_v5_gn_6_74660' => 'lsa', 'Lsat_1_v5_gn_7_11520' => 'lsa', 'Lsat_1_v5_gn_9_67680' => 'lsa', 'Manes.04G008300' => 'mes', 'Manes.04G008400' => 'mes', 'Manes.04G026500' => 'mes', 'Manes.10G135300' => 'mes', 'Manes.11G157300' => 'mes', 'Manes.12G074000' => 'mes', 'Manes.16G006200' => 'mes', 'Manes.17G026400' => 'mes', 'Mapoly0024s0086' => 'mpo', 'Mapoly0024s0087' => 'mpo', 'Mapoly0071s0057' => 'mpo', 'Mapoly0204s0012' => 'mpo', 'MBI04_g37681_MAGBIO' => 'mbi', 'MBI05_g17779_MAGBIO' => 'mbi', 'MBI12_g31184_MAGBIO' => 'mbi', 'MBI17_g11083_MAGBIO' => 'mbi', 'MBI18_g03883_MAGBIO' => 'mbi', 'MBI18_g28940_MAGBIO' => 'mbi', 'MCO01G690' => 'mco', 'MD03G1109900' => 'mdo', 'MD03G1134800' => 'mdo', 'MD05G1348000' => 'mdo', 'MD10G1322400' => 'mdo', 'MD11G1123300' => 'mdo', 'MD11G1157600' => 'mdo', 'Medtr2g084875' => 'mtr', 'Medtr2g088130' => 'mtr', 'Medtr4g055310' => 'mtr', 'Medtr4g061070' => 'mtr', 'Medtr4g132250' => 'mtr', 'MELO3C004795.2' => 'cme', 'MELO3C004797.2' => 'cme', 'MELO3C007396.2' => 'cme', 'MELO3C019277.2' => 'cme', 'MELO3C021449.2' => 'cme', 'MELO3C025736.2' => 'cme', 'Migut.D02175' => 'egut', 'Migut.H01573' => 'egut', 'Migut.M01327' => 'egut', 'Migut.N02513' => 'egut', 'MSTRG.14638' => 'ama', 'MSTRG.18632' => 'ama', 'MSTRG.7203' => 'ama', 'Nitab4.5_0000533g0140' => 'nta', 'Nitab4.5_0000888g0150' => 'nta', 'Nitab4.5_0001453g0040' => 'nta', 'Nitab4.5_0002827g0090' => 'nta', 'Nitab4.5_0003082g0040' => 'nta', 'Nitab4.5_0007799g0040' => 'nta', 'Nitab4.5_0008983g0010' => 'nta', 'Nitab4.5_0009017g0020' => 'nta', 'Nn1g02132' => 'nnu', 'Nn1g03492' => 'nnu', 'Nn1g03493' => 'nnu', 'Nn1g03494' => 'nnu', 'Nn1g07164' => 'nnu', 'Nn1g07291' => 'nnu', 'Nn2g10655' => 'nnu', 'Nn2g11652' => 'nnu', 'Nn2g14008' => 'nnu', 'Nn3g17476' => 'nnu', 'Nn3g17477' => 'nnu', 'Nn4g22370' => 'nnu', 'Nn4g25255' => 'nnu', 'Nn5g27755' => 'nnu', 'Nn6g34260' => 'nnu', 'Nn6g35041' => 'nnu', 'Oeu005924.1' => 'oeu', 'Oeu008383.1' => 'oeu', 'Oeu014928.1' => 'oeu', 'Oeu019889.1' => 'oeu', 'Oeu022271.1' => 'oeu', 'Oeu025271.1' => 'oeu', 'Oeu036302.1' => 'oeu', 'Oeu044100.1' => 'oeu', 'Os01g0528300' => 'osa', 'Os03g0286200' => 'osa', 'Os04g0406600' => 'osa', 'Os07g0512000' => 'osa', 'Os07g0694600' => 'osa', 'Os08g0411000' => 'osa', 'Os09g0565700' => 'osa', 'Os09g0566050' => 'osa', 'Os10g0523700' => 'osa', 'Peaxi162Scf00002g00514' => 'pax', 'Peaxi162Scf00047g01817' => 'pax', 'Peaxi162Scf00114g00001' => 'pax', 'Peaxi162Scf00147g00613' => 'pax', 'Peaxi162Scf00389g00425' => 'pax', 'PGR042G1139' => 'pgr', 'PGR042G3273' => 'pgr', 'PGR102G2180' => 'pgr', 'PGR119G0234' => 'pgr', 'PGR119G0668' => 'pgr', 'PGSC0003DMG400007122' => 'stu', 'PGSC0003DMG400016478' => 'stu', 'PGSC0003DMG400025374' => 'stu', 'PGSC0003DMG400026536' => 'stu', 'Phvul.003G079600' => 'pvu', 'Phvul.005G115600' => 'pvu', 'Phvul.005G127100' => 'pvu', 'Phvul.006G149500' => 'pvu', 'Phvul.006G149600' => 'pvu', 'Phvul.011G071800' => 'pvu', 'Phvul.011G090400' => 'pvu', 'Potri.004G013400' => 'ptr', 'Potri.004G188100' => 'ptr', 'Potri.008G195500' => 'ptr', 'Potri.009G148800' => 'ptr', 'Potri.011G004700' => 'ptr', 'Pp3c17_22810' => 'ppa', 'Pp3c18_4480' => 'ppa', 'Pp3c19_13030' => 'ppa', 'Pp3c1_33620' => 'ppa', 'Pp3c2_9380' => 'ppa', 'PRCOL_00001023' => 'pco', 'Prupe.3G216300' => 'ppe', 'Prupe.4G019500' => 'ppe', 'Prupe.6G092500' => 'ppe', 'Prupe.6G119200' => 'ppe', 'Psat0s1945g0080' => 'psa', 'Psat0s4167g0040' => 'psa', 'Psat1g185800' => 'psa', 'Psat4g006440' => 'psa', 'Psat4g006480' => 'psa', 'Psat4g168120' => 'psa', 'Psat5g255680' => 'psa', 'Psat5g261760' => 'psa', 'Psat7g222120' => 'psa', 'PSO063G7252' => 'pso', 'PSO170G4778' => 'pso', 'PSO210G2249' => 'pso', 'PSO339G2411' => 'pso', 'PSO339G2457' => 'pso', 'PSO339G2854' => 'pso', 'PSO339G4288' => 'pso', 'PSO339G4615' => 'pso', 'PSO384G2796' => 'pso', 'PSO384G2940' => 'pso', 'PSO384G4227' => 'pso', 'PSO478G1425' => 'pso', 'PSO541G3863' => 'pso', 'PSO675G0507' => 'pso', 'PSO782G0338' => 'pso', 'PSO832G0644' => 'pso', 'QL01p013664' => 'qlo', 'QL01p036598' => 'qlo', 'QL05p072984' => 'qlo', 'QL08p005768' => 'qlo', 'QL08p032743' => 'qlo', 'QL93p0073_0439' => 'qlo', 'QL93p0073_0444' => 'qlo', 'RcHm_v2.0_Chr5g0002851' => 'rch', 'RcHm_v2.0_Chr5g0055201' => 'rch', 'RcHm_v2.0_Chr5g0061191' => 'rch', 'RcHm_v2.0_Chr7g0203231' => 'rch', 'Rhsim01G0208100' => 'rsi', 'Rhsim01G0208200' => 'rsi', 'Rhsim02G0106500' => 'rsi', 'Rhsim03G0107900' => 'rsi', 'Rhsim06G0163400' => 'rsi', 'Rhsim13G0105200' => 'rsi', 'Sabra04G0006300' => 'sbr', 'Sabra04G0127000' => 'sbr', 'Sabra08G0148700' => 'sbr', 'Sabra09G0117400' => 'sbr', 'SalBow1G3326' => 'sbo', 'SalBow3G3228' => 'sbo', 'SalBow6G1634' => 'sbo', 'SalBow6G3603' => 'sbo', 'SalBow6G5266' => 'sbo', 'SalBow7G2265' => 'sbo', 'SalBow8G0850' => 'sbo', 'SalBow8G2592' => 'sbo', 'Sc05g0009240' => 'sci', 'Sc12g0002300' => 'sci', 'Sc21g0000100' => 'sci', 'Sc21g0004720' => 'sci', 'Sed0002949' => 'sed', 'Sed0004114' => 'sed', 'Sed0004306' => 'sed', 'Sed0006172' => 'sed', 'Sed0008413' => 'sed', 'Sed0013809' => 'sed', 'Sed0019556' => 'sed', 'SEGI_03570' => 'sgi', 'SEGI_07859' => 'sgi', 'SEGI_15042' => 'sgi', 'SEGI_16263' => 'sgi', 'SEGI_16552' => 'sgi', 'SEGI_24331' => 'sgi', 'SEGI_27316' => 'sgi', 'SEGI_29521' => 'sgi', 'SEGI_41342' => 'sgi', 'SGA_v2.0_scaffold27G11617' => 'sas', 'SGA_v2.0_scaffold316G48428' => 'sas', 'SGA_v2.0_scaffold49G18261' => 'sas', 'SGA_v2.0_scaffold7G03831' => 'sas', 'SGA_v2.0_scaffold93G28359' => 'sas', 'SHI02210' => 'shi', 'SHI06028' => 'shi', 'SHI06321' => 'shi', 'SMO111G0012' => 'smo', 'SMO228G0080' => 'smo', 'SMO356G0756' => 'smo', 'Solyc02g080620.3' => 'sly', 'Solyc06g074530.1' => 'sly', 'Solyc11g066890.1' => 'sly', 'Solyc11g072520.3' => 'sly', 'Sopen02g025330' => 'spe', 'Sopen06g031000' => 'spe', 'Sopen09g008240' => 'spe', 'Sopen09g025210' => 'spe', 'Sopen11g026600' => 'spe', 'Sopen11g030170' => 'spe', 'Sp1g10420' => 'spa', 'Sp3g06570' => 'spa', 'Sp4g10660' => 'spa', 'Sp5g16460' => 'spa', 'Sp6g22710' => 'spa', 'TAR365G0112' => 'tar', 'TAR369G0717' => 'tar', 'TAR374G0976' => 'tar', 'TAR623G1128' => 'tar', 'TAR626G1937' => 'tar', 'TAR627G0123' => 'tar', 'TAR628G0305' => 'tar', 'TAR636G1176' => 'tar', 'TAR636G2442' => 'tar', 'THA.LOC104800556' => 'tha', 'THA.LOC104809501' => 'tha', 'THA.LOC104815126' => 'tha', 'THA.LOC104815732' => 'tha', 'THA.LOC104823528' => 'tha', 'Thecc.02G365600' => 'tca', 'Thecc.06G222300' => 'tca', 'Thecc.09G261800' => 'tca', 'Thecc.09G291400' => 'tca', 'Thhalv10003028m.g' => 'esa', 'Thhalv10007886m.g' => 'esa', 'Thhalv10016085m.g' => 'esa', 'Thhalv10016681m.g' => 'esa', 'Thhalv10020951m.g' => 'esa', 'TPR.G15598' => 'tpr', 'TPR.G29305' => 'tpr', 'TPR.G32395' => 'tpr', 'TPR.G36998' => 'tpr', 'TPR.G4227' => 'tpr', 'TWI18G1433' => 'twi', 'TWI31G0755' => 'twi', 'TWI38G0912' => 'twi', 'TWI75G1097' => 'twi', 'TWI75G1619' => 'twi', 'TWI79G1336' => 'twi', 'unitig_0.g943' => 'ugi', 'unitig_0.g944' => 'ugi', 'unitig_22.g6646' => 'ugi', 'unitig_37.g12681' => 'ugi', 'unitig_8.g3290' => 'ugi', 'vmacro03278' => 'vma', 'vmacro12197' => 'vma', 'vmacro14478' => 'vma', 'vmacro15787' => 'vma', 'vmacro15789' => 'vma', 'vmacro15790' => 'vma', 'vmacro15806' => 'vma', 'vmacro22907' => 'vma', 'vmacro22908' => 'vma', 'vmacro22909' => 'vma', 'vmacro23108' => 'vma', 'VMungo0540G0540' => 'vmu', 'VMungo0540G2468' => 'vmu', 'VMungo1080G0390' => 'vmu', 'VMungo1080G1165' => 'vmu', 'VMungo1127G0170' => 'vmu', 'VMungo1127G2099' => 'vmu', 'VMungo1215G3013' => 'vmu', 'Zm00001eb013110' => 'zma', 'Zm00001eb084260' => 'zma', 'Zm00001eb096110' => 'zma', 'Zm00001eb217510' => 'zma', 'Zm00001eb322550' => 'zma', 'Zm00001eb390770' => 'zma', 'Zm00001eb397170' => 'zma', 'Zm00001eb404610' => 'zma', 'Zm00001eb421790' => 'zma' ), 'gf_id' => 'HOM05D000911', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000911' ), 'data_identifier' => 'HOM05D000911', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000911', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27780' => 'bna', 'A03p35380' => 'bna', 'A04p21160' => 'bna', 'A05p40570' => 'bna', 'A06p26900' => 'bna', 'A08p33230' => 'bna', 'A09p65960' => 'bna', 'A10p18290' => 'bna', 'Aa31LG1G12990' => 'aar', 'Aa31LG1G2980' => 'aar', 'Aa31LG4G14320' => 'aar', 'Aa31LG7G11800' => 'aar', 'Aa31sc36G50' => 'aar', 'Aa31sc36G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3721' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5459' => 'aag', 'Actinidia03028' => 'ach', 'Actinidia03753' => 'ach', 'Actinidia04187' => 'ach', 'Actinidia05509' => 'ach', 'Actinidia24180' => 'ach', 'Actinidia26906' => 'ach', 'Actinidia37097' => 'ach', 'Actinidia38249' => 'ach', 'Ah.01g003470' => 'amhyb', 'Ah.01g004580' => 'amhyb', 'Ah.01g014850' => 'amhyb', 'Ah.01g016830' => 'amhyb', 'Ah.14g088000' => 'amhyb', 'AL1G22980' => 'aly', 'AL3G18990' => 'aly', 'AL4G22440' => 'aly', 'AL4G33180' => 'aly', 'AL5G22920' => 'aly', 'AL6G33660' => 'aly', 'AL8G20720' => 'aly', 'Aqoxy1G00935' => 'aox', 'Aqoxy1G02094' => 'aox', 'Aqoxy2G01239' => 'aox', 'Aqoxy4G01870' => 'aox', 'Aqoxy7G00450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.36ZVTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71EM27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5D6C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH3WRE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3NCM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RIM768' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YB5YRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z36GDV' => 'arhy', 'AT1G08250' => 'ath', 'AT1G11790' => 'ath', 'AT2G27820' => 'ath', 'AT3G07630' => 'ath', 'AT3G44720' => 'ath', 'AT5G22630' => 'ath', 'ATR0693G304' => 'atr', 'ATR0794G109' => 'atr', 'ATR0820G120' => 'atr', 'ATR1159G064' => 'atr', 'Atru.chr10.2239' => 'acertr', 'Atru.chr3.3371' => 'acertr', 'Atru.chr6.3202' => 'acertr', 'AUR62006499' => 'cqu', 'AUR62012718' => 'cqu', 'AUR62021938' => 'cqu', 'AUR62023932' => 'cqu', 'AUR62025034' => 'cqu', 'AUR62025035' => 'cqu', 'AUR62038307' => 'cqu', 'AUR62043466' => 'cqu', 'BcaB02g10748' => 'bca', 'BcaB03g13231' => 'bca', 'BcaB03g14689' => 'bca', 'BcaB05g22716' => 'bca', 'BcaB06g28172' => 'bca', 'BcaB08g36413' => 'bca', 'BcaC01g02186' => 'bca', 'BcaC01g04272' => 'bca', 'BcaC02g08080' => 'bca', 'BcaC02g08227' => 'bca', 'BcaC03g13901' => 'bca', 'BcaC04g19593' => 'bca', 'BcaC04g20874' => 'bca', 'BcaC05g29557' => 'bca', 'BcaC06g35505' => 'bca', 'BcaC07g41954' => 'bca', 'BcaC07g41955' => 'bca', 'BcaC07g41956' => 'bca', 'BcaC07g42519' => 'bca', 'BcaC07g42520' => 'bca', 'BcaC07g42523' => 'bca', 'BcaC07g42524' => 'bca', 'BcaC07g42525' => 'bca', 'BcaC08g47480' => 'bca', 'BcaC08g47481' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00530' => 'bna', 'BolC2t07178H' => 'bol', 'BolC3t16567H' => 'bol', 'BolC4t27234H' => 'bol', 'BolC5t29728H' => 'bol', 'BolC5t34622H' => 'bol', 'BolC6t40321H' => 'bol', 'BolC7t42028H' => 'bol', 'BolC8t49125H' => 'bol', 'BolC8t52538H' => 'bol', 'BolC8t52539H' => 'bol', 'BolC9t56681H' => 'bol', 'BolC9t58266H' => 'bol', 'BolSC21t60294H' => 'bol', 'BraA02t05670Z' => 'bra', 'BraA03t12716Z' => 'bra', 'BraA04t17685Z' => 'bra', 'BraA05t22788Z' => 'bra', 'BraA06t24032Z' => 'bra', 'BraA06t25625Z' => 'bra', 'BraA07t27930Z' => 'bra', 'BraA08t35242Z' => 'bra', 'BraA09t38609Z' => 'bra', 'BraA10t43905Z' => 'bra', 'C02p11060' => 'bna', 'C03p42990' => 'bna', 'C03p67310' => 'bna', 'C04p56990' => 'bna', 'C04p58660' => 'bna', 'C05p09890' => 'bna', 'C05p59680' => 'bna', 'C06p19830' => 'bna', 'C06p53040' => 'bna', 'C07p15230' => 'bna', 'C08p50070' => 'bna', 'C08p50090' => 'bna', 'C09p38330' => 'bna', 'C09p53940' => 'bna', 'CAN.G1014.1' => 'can', 'CAN.G644.30' => 'can', 'CAN.G84.47' => 'can', 'CAN.G919.8' => 'can', 'CANSAT54G0113' => 'cansat', 'CANSAT54G1286' => 'cansat', 'CANSAT64G1020' => 'cansat', 'CARHR008080' => 'chi', 'CARHR008090' => 'chi', 'CARHR012130' => 'chi', 'CARHR038390' => 'chi', 'CARHR082330' => 'chi', 'CARHR120520' => 'chi', 'CARHR151470' => 'chi', 'CARHR190950' => 'chi', 'Carub.0001s0760' => 'cru', 'Carub.0001s1146' => 'cru', 'Carub.0003s0721' => 'cru', 'Carub.0004s0858' => 'cru', 'Carub.0005s1040' => 'cru', 'Carub.0006s2035' => 'cru', 'Carub.0015s0005' => 'cru', 'Ca_01607_v3' => 'car', 'Ca_01677_v3' => 'car', 'Ca_06087_v3' => 'car', 'Ca_19238_v3' => 'car', 'Ca_19373_v3' => 'car', 'Ca_21079_v3' => 'car', 'CBR_g54016' => 'cbr', 'CBR_g54018' => 'cbr', 'CBR_g54020' => 'cbr', 'Cc01_g09780' => 'ccan', 'Cc01_g11680' => 'ccan', 'Cc02_g15610' => 'ccan', 'Cc05_g04350' => 'ccan', 'Cc09_g01580' => 'ccan', 'CDE01G0795' => 'cde', 'CDE02G2024' => 'cde', 'CDE02G2260' => 'cde', 'CDE02G4561' => 'cde', 'CDE05G2733' => 'cde', 'CDE05G3422' => 'cde', 'CDE06G2003' => 'cde', 'CDE08G0576' => 'cde', 'CDE09G0048' => 'cde', 'CDE11G0805' => 'cde', 'Cfa003644' => 'cfa', 'Cfa006290' => 'cfa', 'Cfa010080' => 'cfa', 'Cfa011376' => 'cfa', 'Cfa011576' => 'cfa', 'Cfa011577' => 'cfa', 'Cfa014389' => 'cfa', 'Ciclev10006044m.g' => 'ccl', 'Ciclev10006954m.g' => 'ccl', 'Ciclev10015131m.g' => 'ccl', 'Ciclev10015580m.g' => 'ccl', 'Ciclev10028359m.g' => 'ccl', 'Ciclev10028573m.g' => 'ccl', 'CiPaw.03G159300' => 'cil', 'CiPaw.04G115100' => 'cil', 'CiPaw.09G092800' => 'cil', 'CiPaw.10G071800' => 'cil', 'CiPaw.13G105800' => 'cil', 'CiPaw.13G141000' => 'cil', 'CiPaw.14G103400' => 'cil', 'ClCG01G012700' => 'cla', 'ClCG01G012720' => 'cla', 'ClCG01G021920' => 'cla', 'ClCG02G008870' => 'cla', 'ClCG02G020840' => 'cla', 'ClCG02G021930' => 'cla', 'COL.COLO4_19302' => 'col', 'COL.COLO4_25262' => 'col', 'COL.COLO4_31788' => 'col', 'Cpa.g.c34684' => 'cpa', 'Cpa.g.c36520.1' => 'cpa', 'Cpa.g.c45626' => 'cpa', 'Cpa.g.sc121.17' => 'cpa', 'Cpa.g.sc13.22' => 'cpa', 'Cpa.g.sc87.88' => 'cpa', 'Cre06.g261800' => 'cre', 'CsaV3_1G014500' => 'csa', 'CsaV3_1G014510' => 'csa', 'CsaV3_2G034880' => 'csa', 'CsaV3_6G014760' => 'csa', 'CsaV3_6G021500' => 'csa', 'CsaV3_6G048980' => 'csa', 'CSS0002511' => 'camsi', 'CSS0007556' => 'camsi', 'CSS0008532' => 'camsi', 'CSS0009709' => 'camsi', 'CSS0010486' => 'camsi', 'CSS0016768' => 'camsi', 'CSS0023512' => 'camsi', 'CSS0025341' => 'camsi', 'CSS0027999' => 'camsi', 'CSS0028944' => 'camsi', 'CSS0032292' => 'camsi', 'CSS0032464' => 'camsi', 'CSS0037153' => 'camsi', 'CSS0039256' => 'camsi', 'CSS0048392' => 'camsi', 'CSS0050458' => 'camsi', 'DCAR_004224' => 'dca', 'DCAR_006147' => 'dca', 'DCAR_006465' => 'dca', 'DCAR_008159' => 'dca', 'DCAR_012164' => 'dca', 'DCAR_019764' => 'dca', 'Dinv05418' => 'din', 'Dinv10839' => 'din', 'Dinv12521' => 'din', 'Dinv13900' => 'din', 'Dinv29426' => 'din', 'Duzib150G0263' => 'dzi', 'Duzib168G1178' => 'dzi', 'Duzib168G1924' => 'dzi', 'Duzib170G0299' => 'dzi', 'Duzib170G0813' => 'dzi', 'Duzib235G1128' => 'dzi', 'Duzib248G1060' => 'dzi', 'ECA232G1910' => 'eca', 'ECA233G4621' => 'eca', 'ECA238G1216' => 'eca', 'ECA238G1784' => 'eca', 'ECA248G1242' => 'eca', 'EL10Ac8g20071' => 'bvu', 'EL10Ac9g21086' => 'bvu', 'EL10Ac9g22407' => 'bvu', 'EL10Ac9g22412' => 'bvu', 'Eucgr.A01119' => 'egr', 'Eucgr.E04043' => 'egr', 'Eucgr.J00428' => 'egr', 'Eucgr.J00958' => 'egr', 'FAN11G3091' => 'fan', 'FAN11G3651' => 'fan', 'FAN16G2566' => 'fan', 'FAN21G3155' => 'fan', 'FAN21G3400' => 'fan', 'FAN21G3543' => 'fan', 'FAN25G0234' => 'fan', 'FAN25G1422' => 'fan', 'FAN25G3392' => 'fan', 'FvH4_3g01940' => 'fve', 'FvH4_3g29870' => 'fve', 'FvH4_3g33680' => 'fve', 'Glyma.09G004200' => 'gma', 'Glyma.11G151288' => 'gma', 'Glyma.11G189100' => 'gma', 'Glyma.12G072500' => 'gma', 'Glyma.12G085500' => 'gma', 'Glyma.12G181800' => 'gma', 'Glyma.12G193000' => 'gma', 'Glyma.13G309300' => 'gma', 'Glyma.13G319000' => 'gma', 'Glyma.17G012600' => 'gma', 'Gohir.A06G148600' => 'ghi', 'Gohir.A07G115800' => 'ghi', 'Gohir.A08G003600' => 'ghi', 'Gohir.A09G093300' => 'ghi', 'Gohir.A09G105400' => 'ghi', 'Gohir.A09G105500' => 'ghi', 'Gohir.D06G154600' => 'ghi', 'Gohir.D07G120200' => 'ghi', 'Gohir.D08G013900' => 'ghi', 'Gohir.D09G093100' => 'ghi', 'Gohir.D09G102200' => 'ghi', 'Gohir.D09G102300' => 'ghi', 'Gorai.001G129400' => 'gra', 'Gorai.004G008200' => 'gra', 'Gorai.006G109800' => 'gra', 'Gorai.006G119500' => 'gra', 'Gorai.006G121300' => 'gra', 'Gorai.010G180700' => 'gra', 'GSVIVG01012716001' => 'vvi', 'GSVIVG01025118001' => 'vvi', 'GSVIVG01030439001' => 'vvi', 'GSVIVG01031397001' => 'vvi', 'HanXRQChr01g0004201' => 'han', 'HanXRQChr02g0054941' => 'han', 'HanXRQChr05g0141811' => 'han', 'HanXRQChr07g0197751' => 'han', 'HanXRQChr11g0346691' => 'han', 'HanXRQChr13g0396971' => 'han', 'HanXRQChr14g0432951' => 'han', 'HanXRQChr14g0452001' => 'han', 'HanXRQChr15g0496681' => 'han', 'HanXRQChr17g0557491' => 'han', 'HanXRQChr17g0557501' => 'han', 'Haze_06809' => 'cav', 'Haze_12852' => 'cav', 'Haze_15850' => 'cav', 'Haze_23446' => 'cav', 'Haze_23942' => 'cav', 'Haze_23943' => 'cav', 'Hma1.2p1_0091F.1_g046450' => 'hma', 'Hma1.2p1_0128F.1_g059910' => 'hma', 'Hma1.2p1_0249F.1_g102260' => 'hma', 'Hma1.2p1_0453F.1_g156190' => 'hma', 'Hma1.2p1_0695F.1_g204380' => 'hma', 'Hma1.2p1_0749F.1_g212650' => 'hma', 'Hma1.2p1_2156F.1_g315420' => 'hma', 'Hma1.2p1_2686F.1_g326940' => 'hma', 'HPP92_006428' => 'vpl', 'HPP92_012069' => 'vpl', 'HPP92_014129' => 'vpl', 'HPP92_014133' => 'vpl', 'HPP92_017315' => 'vpl', 'HPP92_026445' => 'vpl', 'HPP92_026446' => 'vpl', 'Hund00774' => 'sun', 'Hund07682' => 'sun', 'Hund21413' => 'sun', 'Hund23462' => 'sun', 'Hund23463' => 'sun', 'Lalb_Chr03g0027911' => 'lal', 'Lalb_Chr13g0304271' => 'lal', 'Lalb_Chr19g0137471' => 'lal', 'Lalb_Chr22g0350651' => 'lal', 'Lalb_Chr24g0395151' => 'lal', 'Lj1A1231T40' => 'lonja', 'Lj1A221T48' => 'lonja', 'Lj1C924T12' => 'lonja', 'Lj2C993G6' => 'lonja', 'Lj3g0005790' => 'lja', 'Lj3g0015432' => 'lja', 'Lj3g0017722' => 'lja', 'Lj3g0018497' => 'lja', 'Lj4g0025071' => 'lja', 'Lsat_1_v5_gn_1_129680' => 'lsa', 'Lsat_1_v5_gn_2_25321' => 'lsa', 'Lsat_1_v5_gn_2_95461' => 'lsa', 'Lsat_1_v5_gn_4_159620' => 'lsa', 'Lsat_1_v5_gn_6_41301' => 'lsa', 'Lsat_1_v5_gn_6_74660' => 'lsa', 'Lsat_1_v5_gn_7_11520' => 'lsa', 'Lsat_1_v5_gn_9_67680' => 'lsa', 'Manes.04G008300' => 'mes', 'Manes.04G008400' => 'mes', 'Manes.04G026500' => 'mes', 'Manes.10G135300' => 'mes', 'Manes.11G157300' => 'mes', 'Manes.12G074000' => 'mes', 'Manes.16G006200' => 'mes', 'Manes.17G026400' => 'mes', 'Mapoly0024s0086' => 'mpo', 'Mapoly0024s0087' => 'mpo', 'Mapoly0071s0057' => 'mpo', 'Mapoly0204s0012' => 'mpo', 'MBI04_g37681_MAGBIO' => 'mbi', 'MBI05_g17779_MAGBIO' => 'mbi', 'MBI12_g31184_MAGBIO' => 'mbi', 'MBI17_g11083_MAGBIO' => 'mbi', 'MBI18_g03883_MAGBIO' => 'mbi', 'MBI18_g28940_MAGBIO' => 'mbi', 'MCO01G690' => 'mco', 'MD03G1109900' => 'mdo', 'MD03G1134800' => 'mdo', 'MD05G1348000' => 'mdo', 'MD10G1322400' => 'mdo', 'MD11G1123300' => 'mdo', 'MD11G1157600' => 'mdo', 'Medtr2g084875' => 'mtr', 'Medtr2g088130' => 'mtr', 'Medtr4g055310' => 'mtr', 'Medtr4g061070' => 'mtr', 'Medtr4g132250' => 'mtr', 'MELO3C004795.2' => 'cme', 'MELO3C004797.2' => 'cme', 'MELO3C007396.2' => 'cme', 'MELO3C019277.2' => 'cme', 'MELO3C021449.2' => 'cme', 'MELO3C025736.2' => 'cme', 'Migut.D02175' => 'egut', 'Migut.H01573' => 'egut', 'Migut.M01327' => 'egut', 'Migut.N02513' => 'egut', 'MSTRG.14638' => 'ama', 'MSTRG.18632' => 'ama', 'MSTRG.7203' => 'ama', 'Nitab4.5_0000533g0140' => 'nta', 'Nitab4.5_0000888g0150' => 'nta', 'Nitab4.5_0001453g0040' => 'nta', 'Nitab4.5_0002827g0090' => 'nta', 'Nitab4.5_0003082g0040' => 'nta', 'Nitab4.5_0007799g0040' => 'nta', 'Nitab4.5_0008983g0010' => 'nta', 'Nitab4.5_0009017g0020' => 'nta', 'Nn1g02132' => 'nnu', 'Nn1g03492' => 'nnu', 'Nn1g03493' => 'nnu', 'Nn1g03494' => 'nnu', 'Nn1g07164' => 'nnu', 'Nn1g07291' => 'nnu', 'Nn2g10655' => 'nnu', 'Nn2g11652' => 'nnu', 'Nn2g14008' => 'nnu', 'Nn3g17476' => 'nnu', 'Nn3g17477' => 'nnu', 'Nn4g22370' => 'nnu', 'Nn4g25255' => 'nnu', 'Nn5g27755' => 'nnu', 'Nn6g34260' => 'nnu', 'Nn6g35041' => 'nnu', 'Oeu005924.1' => 'oeu', 'Oeu008383.1' => 'oeu', 'Oeu014928.1' => 'oeu', 'Oeu019889.1' => 'oeu', 'Oeu022271.1' => 'oeu', 'Oeu025271.1' => 'oeu', 'Oeu036302.1' => 'oeu', 'Oeu044100.1' => 'oeu', 'Os01g0528300' => 'osa', 'Os03g0286200' => 'osa', 'Os04g0406600' => 'osa', 'Os07g0512000' => 'osa', 'Os07g0694600' => 'osa', 'Os08g0411000' => 'osa', 'Os09g0565700' => 'osa', 'Os09g0566050' => 'osa', 'Os10g0523700' => 'osa', 'Peaxi162Scf00002g00514' => 'pax', 'Peaxi162Scf00047g01817' => 'pax', 'Peaxi162Scf00114g00001' => 'pax', 'Peaxi162Scf00147g00613' => 'pax', 'Peaxi162Scf00389g00425' => 'pax', 'PGR042G1139' => 'pgr', 'PGR042G3273' => 'pgr', 'PGR102G2180' => 'pgr', 'PGR119G0234' => 'pgr', 'PGR119G0668' => 'pgr', 'PGSC0003DMG400007122' => 'stu', 'PGSC0003DMG400016478' => 'stu', 'PGSC0003DMG400025374' => 'stu', 'PGSC0003DMG400026536' => 'stu', 'Phvul.003G079600' => 'pvu', 'Phvul.005G115600' => 'pvu', 'Phvul.005G127100' => 'pvu', 'Phvul.006G149500' => 'pvu', 'Phvul.006G149600' => 'pvu', 'Phvul.011G071800' => 'pvu', 'Phvul.011G090400' => 'pvu', 'Potri.004G013400' => 'ptr', 'Potri.004G188100' => 'ptr', 'Potri.008G195500' => 'ptr', 'Potri.009G148800' => 'ptr', 'Potri.011G004700' => 'ptr', 'Pp3c17_22810' => 'ppa', 'Pp3c18_4480' => 'ppa', 'Pp3c19_13030' => 'ppa', 'Pp3c1_33620' => 'ppa', 'Pp3c2_9380' => 'ppa', 'PRCOL_00001023' => 'pco', 'Prupe.3G216300' => 'ppe', 'Prupe.4G019500' => 'ppe', 'Prupe.6G092500' => 'ppe', 'Prupe.6G119200' => 'ppe', 'Psat0s1945g0080' => 'psa', 'Psat0s4167g0040' => 'psa', 'Psat1g185800' => 'psa', 'Psat4g006440' => 'psa', 'Psat4g006480' => 'psa', 'Psat4g168120' => 'psa', 'Psat5g255680' => 'psa', 'Psat5g261760' => 'psa', 'Psat7g222120' => 'psa', 'PSO063G7252' => 'pso', 'PSO170G4778' => 'pso', 'PSO210G2249' => 'pso', 'PSO339G2411' => 'pso', 'PSO339G2457' => 'pso', 'PSO339G2854' => 'pso', 'PSO339G4288' => 'pso', 'PSO339G4615' => 'pso', 'PSO384G2796' => 'pso', 'PSO384G2940' => 'pso', 'PSO384G4227' => 'pso', 'PSO478G1425' => 'pso', 'PSO541G3863' => 'pso', 'PSO675G0507' => 'pso', 'PSO782G0338' => 'pso', 'PSO832G0644' => 'pso', 'QL01p013664' => 'qlo', 'QL01p036598' => 'qlo', 'QL05p072984' => 'qlo', 'QL08p005768' => 'qlo', 'QL08p032743' => 'qlo', 'QL93p0073_0439' => 'qlo', 'QL93p0073_0444' => 'qlo', 'RcHm_v2.0_Chr5g0002851' => 'rch', 'RcHm_v2.0_Chr5g0055201' => 'rch', 'RcHm_v2.0_Chr5g0061191' => 'rch', 'RcHm_v2.0_Chr7g0203231' => 'rch', 'Rhsim01G0208100' => 'rsi', 'Rhsim01G0208200' => 'rsi', 'Rhsim02G0106500' => 'rsi', 'Rhsim03G0107900' => 'rsi', 'Rhsim06G0163400' => 'rsi', 'Rhsim13G0105200' => 'rsi', 'Sabra04G0006300' => 'sbr', 'Sabra04G0127000' => 'sbr', 'Sabra08G0148700' => 'sbr', 'Sabra09G0117400' => 'sbr', 'SalBow1G3326' => 'sbo', 'SalBow3G3228' => 'sbo', 'SalBow6G1634' => 'sbo', 'SalBow6G3603' => 'sbo', 'SalBow6G5266' => 'sbo', 'SalBow7G2265' => 'sbo', 'SalBow8G0850' => 'sbo', 'SalBow8G2592' => 'sbo', 'Sc05g0009240' => 'sci', 'Sc12g0002300' => 'sci', 'Sc21g0000100' => 'sci', 'Sc21g0004720' => 'sci', 'Sed0002949' => 'sed', 'Sed0004114' => 'sed', 'Sed0004306' => 'sed', 'Sed0006172' => 'sed', 'Sed0008413' => 'sed', 'Sed0013809' => 'sed', 'Sed0019556' => 'sed', 'SEGI_03570' => 'sgi', 'SEGI_07859' => 'sgi', 'SEGI_15042' => 'sgi', 'SEGI_16263' => 'sgi', 'SEGI_16552' => 'sgi', 'SEGI_24331' => 'sgi', 'SEGI_27316' => 'sgi', 'SEGI_29521' => 'sgi', 'SEGI_41342' => 'sgi', 'SGA_v2.0_scaffold27G11617' => 'sas', 'SGA_v2.0_scaffold316G48428' => 'sas', 'SGA_v2.0_scaffold49G18261' => 'sas', 'SGA_v2.0_scaffold7G03831' => 'sas', 'SGA_v2.0_scaffold93G28359' => 'sas', 'SHI02210' => 'shi', 'SHI06028' => 'shi', 'SHI06321' => 'shi', 'SMO111G0012' => 'smo', 'SMO228G0080' => 'smo', 'SMO356G0756' => 'smo', 'Solyc02g080620.3' => 'sly', 'Solyc06g074530.1' => 'sly', 'Solyc11g066890.1' => 'sly', 'Solyc11g072520.3' => 'sly', 'Sopen02g025330' => 'spe', 'Sopen06g031000' => 'spe', 'Sopen09g008240' => 'spe', 'Sopen09g025210' => 'spe', 'Sopen11g026600' => 'spe', 'Sopen11g030170' => 'spe', 'Sp1g10420' => 'spa', 'Sp3g06570' => 'spa', 'Sp4g10660' => 'spa', 'Sp5g16460' => 'spa', 'Sp6g22710' => 'spa', 'TAR365G0112' => 'tar', 'TAR369G0717' => 'tar', 'TAR374G0976' => 'tar', 'TAR623G1128' => 'tar', 'TAR626G1937' => 'tar', 'TAR627G0123' => 'tar', 'TAR628G0305' => 'tar', 'TAR636G1176' => 'tar', 'TAR636G2442' => 'tar', 'THA.LOC104800556' => 'tha', 'THA.LOC104809501' => 'tha', 'THA.LOC104815126' => 'tha', 'THA.LOC104815732' => 'tha', 'THA.LOC104823528' => 'tha', 'Thecc.02G365600' => 'tca', 'Thecc.06G222300' => 'tca', 'Thecc.09G261800' => 'tca', 'Thecc.09G291400' => 'tca', 'Thhalv10003028m.g' => 'esa', 'Thhalv10007886m.g' => 'esa', 'Thhalv10016085m.g' => 'esa', 'Thhalv10016681m.g' => 'esa', 'Thhalv10020951m.g' => 'esa', 'TPR.G15598' => 'tpr', 'TPR.G29305' => 'tpr', 'TPR.G32395' => 'tpr', 'TPR.G36998' => 'tpr', 'TPR.G4227' => 'tpr', 'TWI18G1433' => 'twi', 'TWI31G0755' => 'twi', 'TWI38G0912' => 'twi', 'TWI75G1097' => 'twi', 'TWI75G1619' => 'twi', 'TWI79G1336' => 'twi', 'unitig_0.g943' => 'ugi', 'unitig_0.g944' => 'ugi', 'unitig_22.g6646' => 'ugi', 'unitig_37.g12681' => 'ugi', 'unitig_8.g3290' => 'ugi', 'vmacro03278' => 'vma', 'vmacro12197' => 'vma', 'vmacro14478' => 'vma', 'vmacro15787' => 'vma', 'vmacro15789' => 'vma', 'vmacro15790' => 'vma', 'vmacro15806' => 'vma', 'vmacro22907' => 'vma', 'vmacro22908' => 'vma', 'vmacro22909' => 'vma', 'vmacro23108' => 'vma', 'VMungo0540G0540' => 'vmu', 'VMungo0540G2468' => 'vmu', 'VMungo1080G0390' => 'vmu', 'VMungo1080G1165' => 'vmu', 'VMungo1127G0170' => 'vmu', 'VMungo1127G2099' => 'vmu', 'VMungo1215G3013' => 'vmu', 'Zm00001eb013110' => 'zma', 'Zm00001eb084260' => 'zma', 'Zm00001eb096110' => 'zma', 'Zm00001eb217510' => 'zma', 'Zm00001eb322550' => 'zma', 'Zm00001eb390770' => 'zma', 'Zm00001eb397170' => 'zma', 'Zm00001eb404610' => 'zma', 'Zm00001eb421790' => 'zma' ) $gf_id = 'HOM05D000911' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000911' ) $data_identifier = 'HOM05D000911' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 16, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 5, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 6, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 8, 'nnu' => (int) 16, 'oeu' => (int) 8, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 5, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 16, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421790' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000911', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27780' => 'bna', 'A03p35380' => 'bna', 'A04p21160' => 'bna', 'A05p40570' => 'bna', 'A06p26900' => 'bna', 'A08p33230' => 'bna', 'A09p65960' => 'bna', 'A10p18290' => 'bna', 'Aa31LG1G12990' => 'aar', 'Aa31LG1G2980' => 'aar', 'Aa31LG4G14320' => 'aar', 'Aa31LG7G11800' => 'aar', 'Aa31sc36G50' => 'aar', 'Aa31sc36G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3721' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5459' => 'aag', 'Actinidia03028' => 'ach', 'Actinidia03753' => 'ach', 'Actinidia04187' => 'ach', 'Actinidia05509' => 'ach', 'Actinidia24180' => 'ach', 'Actinidia26906' => 'ach', 'Actinidia37097' => 'ach', 'Actinidia38249' => 'ach', 'Ah.01g003470' => 'amhyb', 'Ah.01g004580' => 'amhyb', 'Ah.01g014850' => 'amhyb', 'Ah.01g016830' => 'amhyb', 'Ah.14g088000' => 'amhyb', 'AL1G22980' => 'aly', 'AL3G18990' => 'aly', 'AL4G22440' => 'aly', 'AL4G33180' => 'aly', 'AL5G22920' => 'aly', 'AL6G33660' => 'aly', 'AL8G20720' => 'aly', 'Aqoxy1G00935' => 'aox', 'Aqoxy1G02094' => 'aox', 'Aqoxy2G01239' => 'aox', 'Aqoxy4G01870' => 'aox', 'Aqoxy7G00450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.36ZVTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71EM27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5D6C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH3WRE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3NCM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RIM768' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YB5YRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z36GDV' => 'arhy', 'AT1G08250' => 'ath', 'AT1G11790' => 'ath', 'AT2G27820' => 'ath', 'AT3G07630' => 'ath', 'AT3G44720' => 'ath', 'AT5G22630' => 'ath', 'ATR0693G304' => 'atr', 'ATR0794G109' => 'atr', 'ATR0820G120' => 'atr', 'ATR1159G064' => 'atr', 'Atru.chr10.2239' => 'acertr', 'Atru.chr3.3371' => 'acertr', 'Atru.chr6.3202' => 'acertr', 'AUR62006499' => 'cqu', 'AUR62012718' => 'cqu', 'AUR62021938' => 'cqu', 'AUR62023932' => 'cqu', 'AUR62025034' => 'cqu', 'AUR62025035' => 'cqu', 'AUR62038307' => 'cqu', 'AUR62043466' => 'cqu', 'BcaB02g10748' => 'bca', 'BcaB03g13231' => 'bca', 'BcaB03g14689' => 'bca', 'BcaB05g22716' => 'bca', 'BcaB06g28172' => 'bca', 'BcaB08g36413' => 'bca', 'BcaC01g02186' => 'bca', 'BcaC01g04272' => 'bca', 'BcaC02g08080' => 'bca', 'BcaC02g08227' => 'bca', 'BcaC03g13901' => 'bca', 'BcaC04g19593' => 'bca', 'BcaC04g20874' => 'bca', 'BcaC05g29557' => 'bca', 'BcaC06g35505' => 'bca', 'BcaC07g41954' => 'bca', 'BcaC07g41955' => 'bca', 'BcaC07g41956' => 'bca', 'BcaC07g42519' => 'bca', 'BcaC07g42520' => 'bca', 'BcaC07g42523' => 'bca', 'BcaC07g42524' => 'bca', 'BcaC07g42525' => 'bca', 'BcaC08g47480' => 'bca', 'BcaC08g47481' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00530' => 'bna', 'BolC2t07178H' => 'bol', 'BolC3t16567H' => 'bol', 'BolC4t27234H' => 'bol', 'BolC5t29728H' => 'bol', 'BolC5t34622H' => 'bol', 'BolC6t40321H' => 'bol', 'BolC7t42028H' => 'bol', 'BolC8t49125H' => 'bol', 'BolC8t52538H' => 'bol', 'BolC8t52539H' => 'bol', 'BolC9t56681H' => 'bol', 'BolC9t58266H' => 'bol', 'BolSC21t60294H' => 'bol', 'BraA02t05670Z' => 'bra', 'BraA03t12716Z' => 'bra', 'BraA04t17685Z' => 'bra', 'BraA05t22788Z' => 'bra', 'BraA06t24032Z' => 'bra', 'BraA06t25625Z' => 'bra', 'BraA07t27930Z' => 'bra', 'BraA08t35242Z' => 'bra', 'BraA09t38609Z' => 'bra', 'BraA10t43905Z' => 'bra', 'C02p11060' => 'bna', 'C03p42990' => 'bna', 'C03p67310' => 'bna', 'C04p56990' => 'bna', 'C04p58660' => 'bna', 'C05p09890' => 'bna', 'C05p59680' => 'bna', 'C06p19830' => 'bna', 'C06p53040' => 'bna', 'C07p15230' => 'bna', 'C08p50070' => 'bna', 'C08p50090' => 'bna', 'C09p38330' => 'bna', 'C09p53940' => 'bna', 'CAN.G1014.1' => 'can', 'CAN.G644.30' => 'can', 'CAN.G84.47' => 'can', 'CAN.G919.8' => 'can', 'CANSAT54G0113' => 'cansat', 'CANSAT54G1286' => 'cansat', 'CANSAT64G1020' => 'cansat', 'CARHR008080' => 'chi', 'CARHR008090' => 'chi', 'CARHR012130' => 'chi', 'CARHR038390' => 'chi', 'CARHR082330' => 'chi', 'CARHR120520' => 'chi', 'CARHR151470' => 'chi', 'CARHR190950' => 'chi', 'Carub.0001s0760' => 'cru', 'Carub.0001s1146' => 'cru', 'Carub.0003s0721' => 'cru', 'Carub.0004s0858' => 'cru', 'Carub.0005s1040' => 'cru', 'Carub.0006s2035' => 'cru', 'Carub.0015s0005' => 'cru', 'Ca_01607_v3' => 'car', 'Ca_01677_v3' => 'car', 'Ca_06087_v3' => 'car', 'Ca_19238_v3' => 'car', 'Ca_19373_v3' => 'car', 'Ca_21079_v3' => 'car', 'CBR_g54016' => 'cbr', 'CBR_g54018' => 'cbr', 'CBR_g54020' => 'cbr', 'Cc01_g09780' => 'ccan', 'Cc01_g11680' => 'ccan', 'Cc02_g15610' => 'ccan', 'Cc05_g04350' => 'ccan', 'Cc09_g01580' => 'ccan', 'CDE01G0795' => 'cde', 'CDE02G2024' => 'cde', 'CDE02G2260' => 'cde', 'CDE02G4561' => 'cde', 'CDE05G2733' => 'cde', 'CDE05G3422' => 'cde', 'CDE06G2003' => 'cde', 'CDE08G0576' => 'cde', 'CDE09G0048' => 'cde', 'CDE11G0805' => 'cde', 'Cfa003644' => 'cfa', 'Cfa006290' => 'cfa', 'Cfa010080' => 'cfa', 'Cfa011376' => 'cfa', 'Cfa011576' => 'cfa', 'Cfa011577' => 'cfa', 'Cfa014389' => 'cfa', 'Ciclev10006044m.g' => 'ccl', 'Ciclev10006954m.g' => 'ccl', 'Ciclev10015131m.g' => 'ccl', 'Ciclev10015580m.g' => 'ccl', 'Ciclev10028359m.g' => 'ccl', 'Ciclev10028573m.g' => 'ccl', 'CiPaw.03G159300' => 'cil', 'CiPaw.04G115100' => 'cil', 'CiPaw.09G092800' => 'cil', 'CiPaw.10G071800' => 'cil', 'CiPaw.13G105800' => 'cil', 'CiPaw.13G141000' => 'cil', 'CiPaw.14G103400' => 'cil', 'ClCG01G012700' => 'cla', 'ClCG01G012720' => 'cla', 'ClCG01G021920' => 'cla', 'ClCG02G008870' => 'cla', 'ClCG02G020840' => 'cla', 'ClCG02G021930' => 'cla', 'COL.COLO4_19302' => 'col', 'COL.COLO4_25262' => 'col', 'COL.COLO4_31788' => 'col', 'Cpa.g.c34684' => 'cpa', 'Cpa.g.c36520.1' => 'cpa', 'Cpa.g.c45626' => 'cpa', 'Cpa.g.sc121.17' => 'cpa', 'Cpa.g.sc13.22' => 'cpa', 'Cpa.g.sc87.88' => 'cpa', 'Cre06.g261800' => 'cre', 'CsaV3_1G014500' => 'csa', 'CsaV3_1G014510' => 'csa', 'CsaV3_2G034880' => 'csa', 'CsaV3_6G014760' => 'csa', 'CsaV3_6G021500' => 'csa', 'CsaV3_6G048980' => 'csa', 'CSS0002511' => 'camsi', 'CSS0007556' => 'camsi', 'CSS0008532' => 'camsi', 'CSS0009709' => 'camsi', 'CSS0010486' => 'camsi', 'CSS0016768' => 'camsi', 'CSS0023512' => 'camsi', 'CSS0025341' => 'camsi', 'CSS0027999' => 'camsi', 'CSS0028944' => 'camsi', 'CSS0032292' => 'camsi', 'CSS0032464' => 'camsi', 'CSS0037153' => 'camsi', 'CSS0039256' => 'camsi', 'CSS0048392' => 'camsi', 'CSS0050458' => 'camsi', 'DCAR_004224' => 'dca', 'DCAR_006147' => 'dca', 'DCAR_006465' => 'dca', 'DCAR_008159' => 'dca', 'DCAR_012164' => 'dca', 'DCAR_019764' => 'dca', 'Dinv05418' => 'din', 'Dinv10839' => 'din', 'Dinv12521' => 'din', 'Dinv13900' => 'din', 'Dinv29426' => 'din', 'Duzib150G0263' => 'dzi', 'Duzib168G1178' => 'dzi', 'Duzib168G1924' => 'dzi', 'Duzib170G0299' => 'dzi', 'Duzib170G0813' => 'dzi', 'Duzib235G1128' => 'dzi', 'Duzib248G1060' => 'dzi', 'ECA232G1910' => 'eca', 'ECA233G4621' => 'eca', 'ECA238G1216' => 'eca', 'ECA238G1784' => 'eca', 'ECA248G1242' => 'eca', 'EL10Ac8g20071' => 'bvu', 'EL10Ac9g21086' => 'bvu', 'EL10Ac9g22407' => 'bvu', 'EL10Ac9g22412' => 'bvu', 'Eucgr.A01119' => 'egr', 'Eucgr.E04043' => 'egr', 'Eucgr.J00428' => 'egr', 'Eucgr.J00958' => 'egr', 'FAN11G3091' => 'fan', 'FAN11G3651' => 'fan', 'FAN16G2566' => 'fan', 'FAN21G3155' => 'fan', 'FAN21G3400' => 'fan', 'FAN21G3543' => 'fan', 'FAN25G0234' => 'fan', 'FAN25G1422' => 'fan', 'FAN25G3392' => 'fan', 'FvH4_3g01940' => 'fve', 'FvH4_3g29870' => 'fve', 'FvH4_3g33680' => 'fve', 'Glyma.09G004200' => 'gma', 'Glyma.11G151288' => 'gma', 'Glyma.11G189100' => 'gma', 'Glyma.12G072500' => 'gma', 'Glyma.12G085500' => 'gma', 'Glyma.12G181800' => 'gma', 'Glyma.12G193000' => 'gma', 'Glyma.13G309300' => 'gma', 'Glyma.13G319000' => 'gma', 'Glyma.17G012600' => 'gma', 'Gohir.A06G148600' => 'ghi', 'Gohir.A07G115800' => 'ghi', 'Gohir.A08G003600' => 'ghi', 'Gohir.A09G093300' => 'ghi', 'Gohir.A09G105400' => 'ghi', 'Gohir.A09G105500' => 'ghi', 'Gohir.D06G154600' => 'ghi', 'Gohir.D07G120200' => 'ghi', 'Gohir.D08G013900' => 'ghi', 'Gohir.D09G093100' => 'ghi', 'Gohir.D09G102200' => 'ghi', 'Gohir.D09G102300' => 'ghi', 'Gorai.001G129400' => 'gra', 'Gorai.004G008200' => 'gra', 'Gorai.006G109800' => 'gra', 'Gorai.006G119500' => 'gra', 'Gorai.006G121300' => 'gra', 'Gorai.010G180700' => 'gra', 'GSVIVG01012716001' => 'vvi', 'GSVIVG01025118001' => 'vvi', 'GSVIVG01030439001' => 'vvi', 'GSVIVG01031397001' => 'vvi', 'HanXRQChr01g0004201' => 'han', 'HanXRQChr02g0054941' => 'han', 'HanXRQChr05g0141811' => 'han', 'HanXRQChr07g0197751' => 'han', 'HanXRQChr11g0346691' => 'han', 'HanXRQChr13g0396971' => 'han', 'HanXRQChr14g0432951' => 'han', 'HanXRQChr14g0452001' => 'han', 'HanXRQChr15g0496681' => 'han', 'HanXRQChr17g0557491' => 'han', 'HanXRQChr17g0557501' => 'han', 'Haze_06809' => 'cav', 'Haze_12852' => 'cav', 'Haze_15850' => 'cav', 'Haze_23446' => 'cav', 'Haze_23942' => 'cav', 'Haze_23943' => 'cav', 'Hma1.2p1_0091F.1_g046450' => 'hma', 'Hma1.2p1_0128F.1_g059910' => 'hma', 'Hma1.2p1_0249F.1_g102260' => 'hma', 'Hma1.2p1_0453F.1_g156190' => 'hma', 'Hma1.2p1_0695F.1_g204380' => 'hma', 'Hma1.2p1_0749F.1_g212650' => 'hma', 'Hma1.2p1_2156F.1_g315420' => 'hma', 'Hma1.2p1_2686F.1_g326940' => 'hma', 'HPP92_006428' => 'vpl', 'HPP92_012069' => 'vpl', 'HPP92_014129' => 'vpl', 'HPP92_014133' => 'vpl', 'HPP92_017315' => 'vpl', 'HPP92_026445' => 'vpl', 'HPP92_026446' => 'vpl', 'Hund00774' => 'sun', 'Hund07682' => 'sun', 'Hund21413' => 'sun', 'Hund23462' => 'sun', 'Hund23463' => 'sun', 'Lalb_Chr03g0027911' => 'lal', 'Lalb_Chr13g0304271' => 'lal', 'Lalb_Chr19g0137471' => 'lal', 'Lalb_Chr22g0350651' => 'lal', 'Lalb_Chr24g0395151' => 'lal', 'Lj1A1231T40' => 'lonja', 'Lj1A221T48' => 'lonja', 'Lj1C924T12' => 'lonja', 'Lj2C993G6' => 'lonja', 'Lj3g0005790' => 'lja', 'Lj3g0015432' => 'lja', 'Lj3g0017722' => 'lja', 'Lj3g0018497' => 'lja', 'Lj4g0025071' => 'lja', 'Lsat_1_v5_gn_1_129680' => 'lsa', 'Lsat_1_v5_gn_2_25321' => 'lsa', 'Lsat_1_v5_gn_2_95461' => 'lsa', 'Lsat_1_v5_gn_4_159620' => 'lsa', 'Lsat_1_v5_gn_6_41301' => 'lsa', 'Lsat_1_v5_gn_6_74660' => 'lsa', 'Lsat_1_v5_gn_7_11520' => 'lsa', 'Lsat_1_v5_gn_9_67680' => 'lsa', 'Manes.04G008300' => 'mes', 'Manes.04G008400' => 'mes', 'Manes.04G026500' => 'mes', 'Manes.10G135300' => 'mes', 'Manes.11G157300' => 'mes', 'Manes.12G074000' => 'mes', 'Manes.16G006200' => 'mes', 'Manes.17G026400' => 'mes', 'Mapoly0024s0086' => 'mpo', 'Mapoly0024s0087' => 'mpo', 'Mapoly0071s0057' => 'mpo', 'Mapoly0204s0012' => 'mpo', 'MBI04_g37681_MAGBIO' => 'mbi', 'MBI05_g17779_MAGBIO' => 'mbi', 'MBI12_g31184_MAGBIO' => 'mbi', 'MBI17_g11083_MAGBIO' => 'mbi', 'MBI18_g03883_MAGBIO' => 'mbi', 'MBI18_g28940_MAGBIO' => 'mbi', 'MCO01G690' => 'mco', 'MD03G1109900' => 'mdo', 'MD03G1134800' => 'mdo', 'MD05G1348000' => 'mdo', 'MD10G1322400' => 'mdo', 'MD11G1123300' => 'mdo', 'MD11G1157600' => 'mdo', 'Medtr2g084875' => 'mtr', 'Medtr2g088130' => 'mtr', 'Medtr4g055310' => 'mtr', 'Medtr4g061070' => 'mtr', 'Medtr4g132250' => 'mtr', 'MELO3C004795.2' => 'cme', 'MELO3C004797.2' => 'cme', 'MELO3C007396.2' => 'cme', 'MELO3C019277.2' => 'cme', 'MELO3C021449.2' => 'cme', 'MELO3C025736.2' => 'cme', 'Migut.D02175' => 'egut', 'Migut.H01573' => 'egut', 'Migut.M01327' => 'egut', 'Migut.N02513' => 'egut', 'MSTRG.14638' => 'ama', 'MSTRG.18632' => 'ama', 'MSTRG.7203' => 'ama', 'Nitab4.5_0000533g0140' => 'nta', 'Nitab4.5_0000888g0150' => 'nta', 'Nitab4.5_0001453g0040' => 'nta', 'Nitab4.5_0002827g0090' => 'nta', 'Nitab4.5_0003082g0040' => 'nta', 'Nitab4.5_0007799g0040' => 'nta', 'Nitab4.5_0008983g0010' => 'nta', 'Nitab4.5_0009017g0020' => 'nta', 'Nn1g02132' => 'nnu', 'Nn1g03492' => 'nnu', 'Nn1g03493' => 'nnu', 'Nn1g03494' => 'nnu', 'Nn1g07164' => 'nnu', 'Nn1g07291' => 'nnu', 'Nn2g10655' => 'nnu', 'Nn2g11652' => 'nnu', 'Nn2g14008' => 'nnu', 'Nn3g17476' => 'nnu', 'Nn3g17477' => 'nnu', 'Nn4g22370' => 'nnu', 'Nn4g25255' => 'nnu', 'Nn5g27755' => 'nnu', 'Nn6g34260' => 'nnu', 'Nn6g35041' => 'nnu', 'Oeu005924.1' => 'oeu', 'Oeu008383.1' => 'oeu', 'Oeu014928.1' => 'oeu', 'Oeu019889.1' => 'oeu', 'Oeu022271.1' => 'oeu', 'Oeu025271.1' => 'oeu', 'Oeu036302.1' => 'oeu', 'Oeu044100.1' => 'oeu', 'Os01g0528300' => 'osa', 'Os03g0286200' => 'osa', 'Os04g0406600' => 'osa', 'Os07g0512000' => 'osa', 'Os07g0694600' => 'osa', 'Os08g0411000' => 'osa', 'Os09g0565700' => 'osa', 'Os09g0566050' => 'osa', 'Os10g0523700' => 'osa', 'Peaxi162Scf00002g00514' => 'pax', 'Peaxi162Scf00047g01817' => 'pax', 'Peaxi162Scf00114g00001' => 'pax', 'Peaxi162Scf00147g00613' => 'pax', 'Peaxi162Scf00389g00425' => 'pax', 'PGR042G1139' => 'pgr', 'PGR042G3273' => 'pgr', 'PGR102G2180' => 'pgr', 'PGR119G0234' => 'pgr', 'PGR119G0668' => 'pgr', 'PGSC0003DMG400007122' => 'stu', 'PGSC0003DMG400016478' => 'stu', 'PGSC0003DMG400025374' => 'stu', 'PGSC0003DMG400026536' => 'stu', 'Phvul.003G079600' => 'pvu', 'Phvul.005G115600' => 'pvu', 'Phvul.005G127100' => 'pvu', 'Phvul.006G149500' => 'pvu', 'Phvul.006G149600' => 'pvu', 'Phvul.011G071800' => 'pvu', 'Phvul.011G090400' => 'pvu', 'Potri.004G013400' => 'ptr', 'Potri.004G188100' => 'ptr', 'Potri.008G195500' => 'ptr', 'Potri.009G148800' => 'ptr', 'Potri.011G004700' => 'ptr', 'Pp3c17_22810' => 'ppa', 'Pp3c18_4480' => 'ppa', 'Pp3c19_13030' => 'ppa', 'Pp3c1_33620' => 'ppa', 'Pp3c2_9380' => 'ppa', 'PRCOL_00001023' => 'pco', 'Prupe.3G216300' => 'ppe', 'Prupe.4G019500' => 'ppe', 'Prupe.6G092500' => 'ppe', 'Prupe.6G119200' => 'ppe', 'Psat0s1945g0080' => 'psa', 'Psat0s4167g0040' => 'psa', 'Psat1g185800' => 'psa', 'Psat4g006440' => 'psa', 'Psat4g006480' => 'psa', 'Psat4g168120' => 'psa', 'Psat5g255680' => 'psa', 'Psat5g261760' => 'psa', 'Psat7g222120' => 'psa', 'PSO063G7252' => 'pso', 'PSO170G4778' => 'pso', 'PSO210G2249' => 'pso', 'PSO339G2411' => 'pso', 'PSO339G2457' => 'pso', 'PSO339G2854' => 'pso', 'PSO339G4288' => 'pso', 'PSO339G4615' => 'pso', 'PSO384G2796' => 'pso', 'PSO384G2940' => 'pso', 'PSO384G4227' => 'pso', 'PSO478G1425' => 'pso', 'PSO541G3863' => 'pso', 'PSO675G0507' => 'pso', 'PSO782G0338' => 'pso', 'PSO832G0644' => 'pso', 'QL01p013664' => 'qlo', 'QL01p036598' => 'qlo', 'QL05p072984' => 'qlo', 'QL08p005768' => 'qlo', 'QL08p032743' => 'qlo', 'QL93p0073_0439' => 'qlo', 'QL93p0073_0444' => 'qlo', 'RcHm_v2.0_Chr5g0002851' => 'rch', 'RcHm_v2.0_Chr5g0055201' => 'rch', 'RcHm_v2.0_Chr5g0061191' => 'rch', 'RcHm_v2.0_Chr7g0203231' => 'rch', 'Rhsim01G0208100' => 'rsi', 'Rhsim01G0208200' => 'rsi', 'Rhsim02G0106500' => 'rsi', 'Rhsim03G0107900' => 'rsi', 'Rhsim06G0163400' => 'rsi', 'Rhsim13G0105200' => 'rsi', 'Sabra04G0006300' => 'sbr', 'Sabra04G0127000' => 'sbr', 'Sabra08G0148700' => 'sbr', 'Sabra09G0117400' => 'sbr', 'SalBow1G3326' => 'sbo', 'SalBow3G3228' => 'sbo', 'SalBow6G1634' => 'sbo', 'SalBow6G3603' => 'sbo', 'SalBow6G5266' => 'sbo', 'SalBow7G2265' => 'sbo', 'SalBow8G0850' => 'sbo', 'SalBow8G2592' => 'sbo', 'Sc05g0009240' => 'sci', 'Sc12g0002300' => 'sci', 'Sc21g0000100' => 'sci', 'Sc21g0004720' => 'sci', 'Sed0002949' => 'sed', 'Sed0004114' => 'sed', 'Sed0004306' => 'sed', 'Sed0006172' => 'sed', 'Sed0008413' => 'sed', 'Sed0013809' => 'sed', 'Sed0019556' => 'sed', 'SEGI_03570' => 'sgi', 'SEGI_07859' => 'sgi', 'SEGI_15042' => 'sgi', 'SEGI_16263' => 'sgi', 'SEGI_16552' => 'sgi', 'SEGI_24331' => 'sgi', 'SEGI_27316' => 'sgi', 'SEGI_29521' => 'sgi', 'SEGI_41342' => 'sgi', 'SGA_v2.0_scaffold27G11617' => 'sas', 'SGA_v2.0_scaffold316G48428' => 'sas', 'SGA_v2.0_scaffold49G18261' => 'sas', 'SGA_v2.0_scaffold7G03831' => 'sas', 'SGA_v2.0_scaffold93G28359' => 'sas', 'SHI02210' => 'shi', 'SHI06028' => 'shi', 'SHI06321' => 'shi', 'SMO111G0012' => 'smo', 'SMO228G0080' => 'smo', 'SMO356G0756' => 'smo', 'Solyc02g080620.3' => 'sly', 'Solyc06g074530.1' => 'sly', 'Solyc11g066890.1' => 'sly', 'Solyc11g072520.3' => 'sly', 'Sopen02g025330' => 'spe', 'Sopen06g031000' => 'spe', 'Sopen09g008240' => 'spe', 'Sopen09g025210' => 'spe', 'Sopen11g026600' => 'spe', 'Sopen11g030170' => 'spe', 'Sp1g10420' => 'spa', 'Sp3g06570' => 'spa', 'Sp4g10660' => 'spa', 'Sp5g16460' => 'spa', 'Sp6g22710' => 'spa', 'TAR365G0112' => 'tar', 'TAR369G0717' => 'tar', 'TAR374G0976' => 'tar', 'TAR623G1128' => 'tar', 'TAR626G1937' => 'tar', 'TAR627G0123' => 'tar', 'TAR628G0305' => 'tar', 'TAR636G1176' => 'tar', 'TAR636G2442' => 'tar', 'THA.LOC104800556' => 'tha', 'THA.LOC104809501' => 'tha', 'THA.LOC104815126' => 'tha', 'THA.LOC104815732' => 'tha', 'THA.LOC104823528' => 'tha', 'Thecc.02G365600' => 'tca', 'Thecc.06G222300' => 'tca', 'Thecc.09G261800' => 'tca', 'Thecc.09G291400' => 'tca', 'Thhalv10003028m.g' => 'esa', 'Thhalv10007886m.g' => 'esa', 'Thhalv10016085m.g' => 'esa', 'Thhalv10016681m.g' => 'esa', 'Thhalv10020951m.g' => 'esa', 'TPR.G15598' => 'tpr', 'TPR.G29305' => 'tpr', 'TPR.G32395' => 'tpr', 'TPR.G36998' => 'tpr', 'TPR.G4227' => 'tpr', 'TWI18G1433' => 'twi', 'TWI31G0755' => 'twi', 'TWI38G0912' => 'twi', 'TWI75G1097' => 'twi', 'TWI75G1619' => 'twi', 'TWI79G1336' => 'twi', 'unitig_0.g943' => 'ugi', 'unitig_0.g944' => 'ugi', 'unitig_22.g6646' => 'ugi', 'unitig_37.g12681' => 'ugi', 'unitig_8.g3290' => 'ugi', 'vmacro03278' => 'vma', 'vmacro12197' => 'vma', 'vmacro14478' => 'vma', 'vmacro15787' => 'vma', 'vmacro15789' => 'vma', 'vmacro15790' => 'vma', 'vmacro15806' => 'vma', 'vmacro22907' => 'vma', 'vmacro22908' => 'vma', 'vmacro22909' => 'vma', 'vmacro23108' => 'vma', 'VMungo0540G0540' => 'vmu', 'VMungo0540G2468' => 'vmu', 'VMungo1080G0390' => 'vmu', 'VMungo1080G1165' => 'vmu', 'VMungo1127G0170' => 'vmu', 'VMungo1127G2099' => 'vmu', 'VMungo1215G3013' => 'vmu', 'Zm00001eb013110' => 'zma', 'Zm00001eb084260' => 'zma', 'Zm00001eb096110' => 'zma', 'Zm00001eb217510' => 'zma', 'Zm00001eb322550' => 'zma', 'Zm00001eb390770' => 'zma', 'Zm00001eb397170' => 'zma', 'Zm00001eb404610' => 'zma', 'Zm00001eb421790' => 'zma' ), 'gf_id' => 'HOM05D000911', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000911' ), 'data_identifier' => 'HOM05D000911', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000911', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27780' => 'bna', 'A03p35380' => 'bna', 'A04p21160' => 'bna', 'A05p40570' => 'bna', 'A06p26900' => 'bna', 'A08p33230' => 'bna', 'A09p65960' => 'bna', 'A10p18290' => 'bna', 'Aa31LG1G12990' => 'aar', 'Aa31LG1G2980' => 'aar', 'Aa31LG4G14320' => 'aar', 'Aa31LG7G11800' => 'aar', 'Aa31sc36G50' => 'aar', 'Aa31sc36G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3721' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5459' => 'aag', 'Actinidia03028' => 'ach', 'Actinidia03753' => 'ach', 'Actinidia04187' => 'ach', 'Actinidia05509' => 'ach', 'Actinidia24180' => 'ach', 'Actinidia26906' => 'ach', 'Actinidia37097' => 'ach', 'Actinidia38249' => 'ach', 'Ah.01g003470' => 'amhyb', 'Ah.01g004580' => 'amhyb', 'Ah.01g014850' => 'amhyb', 'Ah.01g016830' => 'amhyb', 'Ah.14g088000' => 'amhyb', 'AL1G22980' => 'aly', 'AL3G18990' => 'aly', 'AL4G22440' => 'aly', 'AL4G33180' => 'aly', 'AL5G22920' => 'aly', 'AL6G33660' => 'aly', 'AL8G20720' => 'aly', 'Aqoxy1G00935' => 'aox', 'Aqoxy1G02094' => 'aox', 'Aqoxy2G01239' => 'aox', 'Aqoxy4G01870' => 'aox', 'Aqoxy7G00450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.36ZVTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71EM27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5D6C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH3WRE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3NCM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RIM768' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YB5YRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z36GDV' => 'arhy', 'AT1G08250' => 'ath', 'AT1G11790' => 'ath', 'AT2G27820' => 'ath', 'AT3G07630' => 'ath', 'AT3G44720' => 'ath', 'AT5G22630' => 'ath', 'ATR0693G304' => 'atr', 'ATR0794G109' => 'atr', 'ATR0820G120' => 'atr', 'ATR1159G064' => 'atr', 'Atru.chr10.2239' => 'acertr', 'Atru.chr3.3371' => 'acertr', 'Atru.chr6.3202' => 'acertr', 'AUR62006499' => 'cqu', 'AUR62012718' => 'cqu', 'AUR62021938' => 'cqu', 'AUR62023932' => 'cqu', 'AUR62025034' => 'cqu', 'AUR62025035' => 'cqu', 'AUR62038307' => 'cqu', 'AUR62043466' => 'cqu', 'BcaB02g10748' => 'bca', 'BcaB03g13231' => 'bca', 'BcaB03g14689' => 'bca', 'BcaB05g22716' => 'bca', 'BcaB06g28172' => 'bca', 'BcaB08g36413' => 'bca', 'BcaC01g02186' => 'bca', 'BcaC01g04272' => 'bca', 'BcaC02g08080' => 'bca', 'BcaC02g08227' => 'bca', 'BcaC03g13901' => 'bca', 'BcaC04g19593' => 'bca', 'BcaC04g20874' => 'bca', 'BcaC05g29557' => 'bca', 'BcaC06g35505' => 'bca', 'BcaC07g41954' => 'bca', 'BcaC07g41955' => 'bca', 'BcaC07g41956' => 'bca', 'BcaC07g42519' => 'bca', 'BcaC07g42520' => 'bca', 'BcaC07g42523' => 'bca', 'BcaC07g42524' => 'bca', 'BcaC07g42525' => 'bca', 'BcaC08g47480' => 'bca', 'BcaC08g47481' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00530' => 'bna', 'BolC2t07178H' => 'bol', 'BolC3t16567H' => 'bol', 'BolC4t27234H' => 'bol', 'BolC5t29728H' => 'bol', 'BolC5t34622H' => 'bol', 'BolC6t40321H' => 'bol', 'BolC7t42028H' => 'bol', 'BolC8t49125H' => 'bol', 'BolC8t52538H' => 'bol', 'BolC8t52539H' => 'bol', 'BolC9t56681H' => 'bol', 'BolC9t58266H' => 'bol', 'BolSC21t60294H' => 'bol', 'BraA02t05670Z' => 'bra', 'BraA03t12716Z' => 'bra', 'BraA04t17685Z' => 'bra', 'BraA05t22788Z' => 'bra', 'BraA06t24032Z' => 'bra', 'BraA06t25625Z' => 'bra', 'BraA07t27930Z' => 'bra', 'BraA08t35242Z' => 'bra', 'BraA09t38609Z' => 'bra', 'BraA10t43905Z' => 'bra', 'C02p11060' => 'bna', 'C03p42990' => 'bna', 'C03p67310' => 'bna', 'C04p56990' => 'bna', 'C04p58660' => 'bna', 'C05p09890' => 'bna', 'C05p59680' => 'bna', 'C06p19830' => 'bna', 'C06p53040' => 'bna', 'C07p15230' => 'bna', 'C08p50070' => 'bna', 'C08p50090' => 'bna', 'C09p38330' => 'bna', 'C09p53940' => 'bna', 'CAN.G1014.1' => 'can', 'CAN.G644.30' => 'can', 'CAN.G84.47' => 'can', 'CAN.G919.8' => 'can', 'CANSAT54G0113' => 'cansat', 'CANSAT54G1286' => 'cansat', 'CANSAT64G1020' => 'cansat', 'CARHR008080' => 'chi', 'CARHR008090' => 'chi', 'CARHR012130' => 'chi', 'CARHR038390' => 'chi', 'CARHR082330' => 'chi', 'CARHR120520' => 'chi', 'CARHR151470' => 'chi', 'CARHR190950' => 'chi', 'Carub.0001s0760' => 'cru', 'Carub.0001s1146' => 'cru', 'Carub.0003s0721' => 'cru', 'Carub.0004s0858' => 'cru', 'Carub.0005s1040' => 'cru', 'Carub.0006s2035' => 'cru', 'Carub.0015s0005' => 'cru', 'Ca_01607_v3' => 'car', 'Ca_01677_v3' => 'car', 'Ca_06087_v3' => 'car', 'Ca_19238_v3' => 'car', 'Ca_19373_v3' => 'car', 'Ca_21079_v3' => 'car', 'CBR_g54016' => 'cbr', 'CBR_g54018' => 'cbr', 'CBR_g54020' => 'cbr', 'Cc01_g09780' => 'ccan', 'Cc01_g11680' => 'ccan', 'Cc02_g15610' => 'ccan', 'Cc05_g04350' => 'ccan', 'Cc09_g01580' => 'ccan', 'CDE01G0795' => 'cde', 'CDE02G2024' => 'cde', 'CDE02G2260' => 'cde', 'CDE02G4561' => 'cde', 'CDE05G2733' => 'cde', 'CDE05G3422' => 'cde', 'CDE06G2003' => 'cde', 'CDE08G0576' => 'cde', 'CDE09G0048' => 'cde', 'CDE11G0805' => 'cde', 'Cfa003644' => 'cfa', 'Cfa006290' => 'cfa', 'Cfa010080' => 'cfa', 'Cfa011376' => 'cfa', 'Cfa011576' => 'cfa', 'Cfa011577' => 'cfa', 'Cfa014389' => 'cfa', 'Ciclev10006044m.g' => 'ccl', 'Ciclev10006954m.g' => 'ccl', 'Ciclev10015131m.g' => 'ccl', 'Ciclev10015580m.g' => 'ccl', 'Ciclev10028359m.g' => 'ccl', 'Ciclev10028573m.g' => 'ccl', 'CiPaw.03G159300' => 'cil', 'CiPaw.04G115100' => 'cil', 'CiPaw.09G092800' => 'cil', 'CiPaw.10G071800' => 'cil', 'CiPaw.13G105800' => 'cil', 'CiPaw.13G141000' => 'cil', 'CiPaw.14G103400' => 'cil', 'ClCG01G012700' => 'cla', 'ClCG01G012720' => 'cla', 'ClCG01G021920' => 'cla', 'ClCG02G008870' => 'cla', 'ClCG02G020840' => 'cla', 'ClCG02G021930' => 'cla', 'COL.COLO4_19302' => 'col', 'COL.COLO4_25262' => 'col', 'COL.COLO4_31788' => 'col', 'Cpa.g.c34684' => 'cpa', 'Cpa.g.c36520.1' => 'cpa', 'Cpa.g.c45626' => 'cpa', 'Cpa.g.sc121.17' => 'cpa', 'Cpa.g.sc13.22' => 'cpa', 'Cpa.g.sc87.88' => 'cpa', 'Cre06.g261800' => 'cre', 'CsaV3_1G014500' => 'csa', 'CsaV3_1G014510' => 'csa', 'CsaV3_2G034880' => 'csa', 'CsaV3_6G014760' => 'csa', 'CsaV3_6G021500' => 'csa', 'CsaV3_6G048980' => 'csa', 'CSS0002511' => 'camsi', 'CSS0007556' => 'camsi', 'CSS0008532' => 'camsi', 'CSS0009709' => 'camsi', 'CSS0010486' => 'camsi', 'CSS0016768' => 'camsi', 'CSS0023512' => 'camsi', 'CSS0025341' => 'camsi', 'CSS0027999' => 'camsi', 'CSS0028944' => 'camsi', 'CSS0032292' => 'camsi', 'CSS0032464' => 'camsi', 'CSS0037153' => 'camsi', 'CSS0039256' => 'camsi', 'CSS0048392' => 'camsi', 'CSS0050458' => 'camsi', 'DCAR_004224' => 'dca', 'DCAR_006147' => 'dca', 'DCAR_006465' => 'dca', 'DCAR_008159' => 'dca', 'DCAR_012164' => 'dca', 'DCAR_019764' => 'dca', 'Dinv05418' => 'din', 'Dinv10839' => 'din', 'Dinv12521' => 'din', 'Dinv13900' => 'din', 'Dinv29426' => 'din', 'Duzib150G0263' => 'dzi', 'Duzib168G1178' => 'dzi', 'Duzib168G1924' => 'dzi', 'Duzib170G0299' => 'dzi', 'Duzib170G0813' => 'dzi', 'Duzib235G1128' => 'dzi', 'Duzib248G1060' => 'dzi', 'ECA232G1910' => 'eca', 'ECA233G4621' => 'eca', 'ECA238G1216' => 'eca', 'ECA238G1784' => 'eca', 'ECA248G1242' => 'eca', 'EL10Ac8g20071' => 'bvu', 'EL10Ac9g21086' => 'bvu', 'EL10Ac9g22407' => 'bvu', 'EL10Ac9g22412' => 'bvu', 'Eucgr.A01119' => 'egr', 'Eucgr.E04043' => 'egr', 'Eucgr.J00428' => 'egr', 'Eucgr.J00958' => 'egr', 'FAN11G3091' => 'fan', 'FAN11G3651' => 'fan', 'FAN16G2566' => 'fan', 'FAN21G3155' => 'fan', 'FAN21G3400' => 'fan', 'FAN21G3543' => 'fan', 'FAN25G0234' => 'fan', 'FAN25G1422' => 'fan', 'FAN25G3392' => 'fan', 'FvH4_3g01940' => 'fve', 'FvH4_3g29870' => 'fve', 'FvH4_3g33680' => 'fve', 'Glyma.09G004200' => 'gma', 'Glyma.11G151288' => 'gma', 'Glyma.11G189100' => 'gma', 'Glyma.12G072500' => 'gma', 'Glyma.12G085500' => 'gma', 'Glyma.12G181800' => 'gma', 'Glyma.12G193000' => 'gma', 'Glyma.13G309300' => 'gma', 'Glyma.13G319000' => 'gma', 'Glyma.17G012600' => 'gma', 'Gohir.A06G148600' => 'ghi', 'Gohir.A07G115800' => 'ghi', 'Gohir.A08G003600' => 'ghi', 'Gohir.A09G093300' => 'ghi', 'Gohir.A09G105400' => 'ghi', 'Gohir.A09G105500' => 'ghi', 'Gohir.D06G154600' => 'ghi', 'Gohir.D07G120200' => 'ghi', 'Gohir.D08G013900' => 'ghi', 'Gohir.D09G093100' => 'ghi', 'Gohir.D09G102200' => 'ghi', 'Gohir.D09G102300' => 'ghi', 'Gorai.001G129400' => 'gra', 'Gorai.004G008200' => 'gra', 'Gorai.006G109800' => 'gra', 'Gorai.006G119500' => 'gra', 'Gorai.006G121300' => 'gra', 'Gorai.010G180700' => 'gra', 'GSVIVG01012716001' => 'vvi', 'GSVIVG01025118001' => 'vvi', 'GSVIVG01030439001' => 'vvi', 'GSVIVG01031397001' => 'vvi', 'HanXRQChr01g0004201' => 'han', 'HanXRQChr02g0054941' => 'han', 'HanXRQChr05g0141811' => 'han', 'HanXRQChr07g0197751' => 'han', 'HanXRQChr11g0346691' => 'han', 'HanXRQChr13g0396971' => 'han', 'HanXRQChr14g0432951' => 'han', 'HanXRQChr14g0452001' => 'han', 'HanXRQChr15g0496681' => 'han', 'HanXRQChr17g0557491' => 'han', 'HanXRQChr17g0557501' => 'han', 'Haze_06809' => 'cav', 'Haze_12852' => 'cav', 'Haze_15850' => 'cav', 'Haze_23446' => 'cav', 'Haze_23942' => 'cav', 'Haze_23943' => 'cav', 'Hma1.2p1_0091F.1_g046450' => 'hma', 'Hma1.2p1_0128F.1_g059910' => 'hma', 'Hma1.2p1_0249F.1_g102260' => 'hma', 'Hma1.2p1_0453F.1_g156190' => 'hma', 'Hma1.2p1_0695F.1_g204380' => 'hma', 'Hma1.2p1_0749F.1_g212650' => 'hma', 'Hma1.2p1_2156F.1_g315420' => 'hma', 'Hma1.2p1_2686F.1_g326940' => 'hma', 'HPP92_006428' => 'vpl', 'HPP92_012069' => 'vpl', 'HPP92_014129' => 'vpl', 'HPP92_014133' => 'vpl', 'HPP92_017315' => 'vpl', 'HPP92_026445' => 'vpl', 'HPP92_026446' => 'vpl', 'Hund00774' => 'sun', 'Hund07682' => 'sun', 'Hund21413' => 'sun', 'Hund23462' => 'sun', 'Hund23463' => 'sun', 'Lalb_Chr03g0027911' => 'lal', 'Lalb_Chr13g0304271' => 'lal', 'Lalb_Chr19g0137471' => 'lal', 'Lalb_Chr22g0350651' => 'lal', 'Lalb_Chr24g0395151' => 'lal', 'Lj1A1231T40' => 'lonja', 'Lj1A221T48' => 'lonja', 'Lj1C924T12' => 'lonja', 'Lj2C993G6' => 'lonja', 'Lj3g0005790' => 'lja', 'Lj3g0015432' => 'lja', 'Lj3g0017722' => 'lja', 'Lj3g0018497' => 'lja', 'Lj4g0025071' => 'lja', 'Lsat_1_v5_gn_1_129680' => 'lsa', 'Lsat_1_v5_gn_2_25321' => 'lsa', 'Lsat_1_v5_gn_2_95461' => 'lsa', 'Lsat_1_v5_gn_4_159620' => 'lsa', 'Lsat_1_v5_gn_6_41301' => 'lsa', 'Lsat_1_v5_gn_6_74660' => 'lsa', 'Lsat_1_v5_gn_7_11520' => 'lsa', 'Lsat_1_v5_gn_9_67680' => 'lsa', 'Manes.04G008300' => 'mes', 'Manes.04G008400' => 'mes', 'Manes.04G026500' => 'mes', 'Manes.10G135300' => 'mes', 'Manes.11G157300' => 'mes', 'Manes.12G074000' => 'mes', 'Manes.16G006200' => 'mes', 'Manes.17G026400' => 'mes', 'Mapoly0024s0086' => 'mpo', 'Mapoly0024s0087' => 'mpo', 'Mapoly0071s0057' => 'mpo', 'Mapoly0204s0012' => 'mpo', 'MBI04_g37681_MAGBIO' => 'mbi', 'MBI05_g17779_MAGBIO' => 'mbi', 'MBI12_g31184_MAGBIO' => 'mbi', 'MBI17_g11083_MAGBIO' => 'mbi', 'MBI18_g03883_MAGBIO' => 'mbi', 'MBI18_g28940_MAGBIO' => 'mbi', 'MCO01G690' => 'mco', 'MD03G1109900' => 'mdo', 'MD03G1134800' => 'mdo', 'MD05G1348000' => 'mdo', 'MD10G1322400' => 'mdo', 'MD11G1123300' => 'mdo', 'MD11G1157600' => 'mdo', 'Medtr2g084875' => 'mtr', 'Medtr2g088130' => 'mtr', 'Medtr4g055310' => 'mtr', 'Medtr4g061070' => 'mtr', 'Medtr4g132250' => 'mtr', 'MELO3C004795.2' => 'cme', 'MELO3C004797.2' => 'cme', 'MELO3C007396.2' => 'cme', 'MELO3C019277.2' => 'cme', 'MELO3C021449.2' => 'cme', 'MELO3C025736.2' => 'cme', 'Migut.D02175' => 'egut', 'Migut.H01573' => 'egut', 'Migut.M01327' => 'egut', 'Migut.N02513' => 'egut', 'MSTRG.14638' => 'ama', 'MSTRG.18632' => 'ama', 'MSTRG.7203' => 'ama', 'Nitab4.5_0000533g0140' => 'nta', 'Nitab4.5_0000888g0150' => 'nta', 'Nitab4.5_0001453g0040' => 'nta', 'Nitab4.5_0002827g0090' => 'nta', 'Nitab4.5_0003082g0040' => 'nta', 'Nitab4.5_0007799g0040' => 'nta', 'Nitab4.5_0008983g0010' => 'nta', 'Nitab4.5_0009017g0020' => 'nta', 'Nn1g02132' => 'nnu', 'Nn1g03492' => 'nnu', 'Nn1g03493' => 'nnu', 'Nn1g03494' => 'nnu', 'Nn1g07164' => 'nnu', 'Nn1g07291' => 'nnu', 'Nn2g10655' => 'nnu', 'Nn2g11652' => 'nnu', 'Nn2g14008' => 'nnu', 'Nn3g17476' => 'nnu', 'Nn3g17477' => 'nnu', 'Nn4g22370' => 'nnu', 'Nn4g25255' => 'nnu', 'Nn5g27755' => 'nnu', 'Nn6g34260' => 'nnu', 'Nn6g35041' => 'nnu', 'Oeu005924.1' => 'oeu', 'Oeu008383.1' => 'oeu', 'Oeu014928.1' => 'oeu', 'Oeu019889.1' => 'oeu', 'Oeu022271.1' => 'oeu', 'Oeu025271.1' => 'oeu', 'Oeu036302.1' => 'oeu', 'Oeu044100.1' => 'oeu', 'Os01g0528300' => 'osa', 'Os03g0286200' => 'osa', 'Os04g0406600' => 'osa', 'Os07g0512000' => 'osa', 'Os07g0694600' => 'osa', 'Os08g0411000' => 'osa', 'Os09g0565700' => 'osa', 'Os09g0566050' => 'osa', 'Os10g0523700' => 'osa', 'Peaxi162Scf00002g00514' => 'pax', 'Peaxi162Scf00047g01817' => 'pax', 'Peaxi162Scf00114g00001' => 'pax', 'Peaxi162Scf00147g00613' => 'pax', 'Peaxi162Scf00389g00425' => 'pax', 'PGR042G1139' => 'pgr', 'PGR042G3273' => 'pgr', 'PGR102G2180' => 'pgr', 'PGR119G0234' => 'pgr', 'PGR119G0668' => 'pgr', 'PGSC0003DMG400007122' => 'stu', 'PGSC0003DMG400016478' => 'stu', 'PGSC0003DMG400025374' => 'stu', 'PGSC0003DMG400026536' => 'stu', 'Phvul.003G079600' => 'pvu', 'Phvul.005G115600' => 'pvu', 'Phvul.005G127100' => 'pvu', 'Phvul.006G149500' => 'pvu', 'Phvul.006G149600' => 'pvu', 'Phvul.011G071800' => 'pvu', 'Phvul.011G090400' => 'pvu', 'Potri.004G013400' => 'ptr', 'Potri.004G188100' => 'ptr', 'Potri.008G195500' => 'ptr', 'Potri.009G148800' => 'ptr', 'Potri.011G004700' => 'ptr', 'Pp3c17_22810' => 'ppa', 'Pp3c18_4480' => 'ppa', 'Pp3c19_13030' => 'ppa', 'Pp3c1_33620' => 'ppa', 'Pp3c2_9380' => 'ppa', 'PRCOL_00001023' => 'pco', 'Prupe.3G216300' => 'ppe', 'Prupe.4G019500' => 'ppe', 'Prupe.6G092500' => 'ppe', 'Prupe.6G119200' => 'ppe', 'Psat0s1945g0080' => 'psa', 'Psat0s4167g0040' => 'psa', 'Psat1g185800' => 'psa', 'Psat4g006440' => 'psa', 'Psat4g006480' => 'psa', 'Psat4g168120' => 'psa', 'Psat5g255680' => 'psa', 'Psat5g261760' => 'psa', 'Psat7g222120' => 'psa', 'PSO063G7252' => 'pso', 'PSO170G4778' => 'pso', 'PSO210G2249' => 'pso', 'PSO339G2411' => 'pso', 'PSO339G2457' => 'pso', 'PSO339G2854' => 'pso', 'PSO339G4288' => 'pso', 'PSO339G4615' => 'pso', 'PSO384G2796' => 'pso', 'PSO384G2940' => 'pso', 'PSO384G4227' => 'pso', 'PSO478G1425' => 'pso', 'PSO541G3863' => 'pso', 'PSO675G0507' => 'pso', 'PSO782G0338' => 'pso', 'PSO832G0644' => 'pso', 'QL01p013664' => 'qlo', 'QL01p036598' => 'qlo', 'QL05p072984' => 'qlo', 'QL08p005768' => 'qlo', 'QL08p032743' => 'qlo', 'QL93p0073_0439' => 'qlo', 'QL93p0073_0444' => 'qlo', 'RcHm_v2.0_Chr5g0002851' => 'rch', 'RcHm_v2.0_Chr5g0055201' => 'rch', 'RcHm_v2.0_Chr5g0061191' => 'rch', 'RcHm_v2.0_Chr7g0203231' => 'rch', 'Rhsim01G0208100' => 'rsi', 'Rhsim01G0208200' => 'rsi', 'Rhsim02G0106500' => 'rsi', 'Rhsim03G0107900' => 'rsi', 'Rhsim06G0163400' => 'rsi', 'Rhsim13G0105200' => 'rsi', 'Sabra04G0006300' => 'sbr', 'Sabra04G0127000' => 'sbr', 'Sabra08G0148700' => 'sbr', 'Sabra09G0117400' => 'sbr', 'SalBow1G3326' => 'sbo', 'SalBow3G3228' => 'sbo', 'SalBow6G1634' => 'sbo', 'SalBow6G3603' => 'sbo', 'SalBow6G5266' => 'sbo', 'SalBow7G2265' => 'sbo', 'SalBow8G0850' => 'sbo', 'SalBow8G2592' => 'sbo', 'Sc05g0009240' => 'sci', 'Sc12g0002300' => 'sci', 'Sc21g0000100' => 'sci', 'Sc21g0004720' => 'sci', 'Sed0002949' => 'sed', 'Sed0004114' => 'sed', 'Sed0004306' => 'sed', 'Sed0006172' => 'sed', 'Sed0008413' => 'sed', 'Sed0013809' => 'sed', 'Sed0019556' => 'sed', 'SEGI_03570' => 'sgi', 'SEGI_07859' => 'sgi', 'SEGI_15042' => 'sgi', 'SEGI_16263' => 'sgi', 'SEGI_16552' => 'sgi', 'SEGI_24331' => 'sgi', 'SEGI_27316' => 'sgi', 'SEGI_29521' => 'sgi', 'SEGI_41342' => 'sgi', 'SGA_v2.0_scaffold27G11617' => 'sas', 'SGA_v2.0_scaffold316G48428' => 'sas', 'SGA_v2.0_scaffold49G18261' => 'sas', 'SGA_v2.0_scaffold7G03831' => 'sas', 'SGA_v2.0_scaffold93G28359' => 'sas', 'SHI02210' => 'shi', 'SHI06028' => 'shi', 'SHI06321' => 'shi', 'SMO111G0012' => 'smo', 'SMO228G0080' => 'smo', 'SMO356G0756' => 'smo', 'Solyc02g080620.3' => 'sly', 'Solyc06g074530.1' => 'sly', 'Solyc11g066890.1' => 'sly', 'Solyc11g072520.3' => 'sly', 'Sopen02g025330' => 'spe', 'Sopen06g031000' => 'spe', 'Sopen09g008240' => 'spe', 'Sopen09g025210' => 'spe', 'Sopen11g026600' => 'spe', 'Sopen11g030170' => 'spe', 'Sp1g10420' => 'spa', 'Sp3g06570' => 'spa', 'Sp4g10660' => 'spa', 'Sp5g16460' => 'spa', 'Sp6g22710' => 'spa', 'TAR365G0112' => 'tar', 'TAR369G0717' => 'tar', 'TAR374G0976' => 'tar', 'TAR623G1128' => 'tar', 'TAR626G1937' => 'tar', 'TAR627G0123' => 'tar', 'TAR628G0305' => 'tar', 'TAR636G1176' => 'tar', 'TAR636G2442' => 'tar', 'THA.LOC104800556' => 'tha', 'THA.LOC104809501' => 'tha', 'THA.LOC104815126' => 'tha', 'THA.LOC104815732' => 'tha', 'THA.LOC104823528' => 'tha', 'Thecc.02G365600' => 'tca', 'Thecc.06G222300' => 'tca', 'Thecc.09G261800' => 'tca', 'Thecc.09G291400' => 'tca', 'Thhalv10003028m.g' => 'esa', 'Thhalv10007886m.g' => 'esa', 'Thhalv10016085m.g' => 'esa', 'Thhalv10016681m.g' => 'esa', 'Thhalv10020951m.g' => 'esa', 'TPR.G15598' => 'tpr', 'TPR.G29305' => 'tpr', 'TPR.G32395' => 'tpr', 'TPR.G36998' => 'tpr', 'TPR.G4227' => 'tpr', 'TWI18G1433' => 'twi', 'TWI31G0755' => 'twi', 'TWI38G0912' => 'twi', 'TWI75G1097' => 'twi', 'TWI75G1619' => 'twi', 'TWI79G1336' => 'twi', 'unitig_0.g943' => 'ugi', 'unitig_0.g944' => 'ugi', 'unitig_22.g6646' => 'ugi', 'unitig_37.g12681' => 'ugi', 'unitig_8.g3290' => 'ugi', 'vmacro03278' => 'vma', 'vmacro12197' => 'vma', 'vmacro14478' => 'vma', 'vmacro15787' => 'vma', 'vmacro15789' => 'vma', 'vmacro15790' => 'vma', 'vmacro15806' => 'vma', 'vmacro22907' => 'vma', 'vmacro22908' => 'vma', 'vmacro22909' => 'vma', 'vmacro23108' => 'vma', 'VMungo0540G0540' => 'vmu', 'VMungo0540G2468' => 'vmu', 'VMungo1080G0390' => 'vmu', 'VMungo1080G1165' => 'vmu', 'VMungo1127G0170' => 'vmu', 'VMungo1127G2099' => 'vmu', 'VMungo1215G3013' => 'vmu', 'Zm00001eb013110' => 'zma', 'Zm00001eb084260' => 'zma', 'Zm00001eb096110' => 'zma', 'Zm00001eb217510' => 'zma', 'Zm00001eb322550' => 'zma', 'Zm00001eb390770' => 'zma', 'Zm00001eb397170' => 'zma', 'Zm00001eb404610' => 'zma', 'Zm00001eb421790' => 'zma' ) $gf_id = 'HOM05D000911' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000911' ) $data_identifier = 'HOM05D000911' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 16, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 5, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 6, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 8, 'nnu' => (int) 16, 'oeu' => (int) 8, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 5, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 16, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421790' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000911', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27780' => 'bna', 'A03p35380' => 'bna', 'A04p21160' => 'bna', 'A05p40570' => 'bna', 'A06p26900' => 'bna', 'A08p33230' => 'bna', 'A09p65960' => 'bna', 'A10p18290' => 'bna', 'Aa31LG1G12990' => 'aar', 'Aa31LG1G2980' => 'aar', 'Aa31LG4G14320' => 'aar', 'Aa31LG7G11800' => 'aar', 'Aa31sc36G50' => 'aar', 'Aa31sc36G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3721' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5459' => 'aag', 'Actinidia03028' => 'ach', 'Actinidia03753' => 'ach', 'Actinidia04187' => 'ach', 'Actinidia05509' => 'ach', 'Actinidia24180' => 'ach', 'Actinidia26906' => 'ach', 'Actinidia37097' => 'ach', 'Actinidia38249' => 'ach', 'Ah.01g003470' => 'amhyb', 'Ah.01g004580' => 'amhyb', 'Ah.01g014850' => 'amhyb', 'Ah.01g016830' => 'amhyb', 'Ah.14g088000' => 'amhyb', 'AL1G22980' => 'aly', 'AL3G18990' => 'aly', 'AL4G22440' => 'aly', 'AL4G33180' => 'aly', 'AL5G22920' => 'aly', 'AL6G33660' => 'aly', 'AL8G20720' => 'aly', 'Aqoxy1G00935' => 'aox', 'Aqoxy1G02094' => 'aox', 'Aqoxy2G01239' => 'aox', 'Aqoxy4G01870' => 'aox', 'Aqoxy7G00450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.36ZVTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71EM27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5D6C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH3WRE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3NCM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RIM768' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YB5YRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z36GDV' => 'arhy', 'AT1G08250' => 'ath', 'AT1G11790' => 'ath', 'AT2G27820' => 'ath', 'AT3G07630' => 'ath', 'AT3G44720' => 'ath', 'AT5G22630' => 'ath', 'ATR0693G304' => 'atr', 'ATR0794G109' => 'atr', 'ATR0820G120' => 'atr', 'ATR1159G064' => 'atr', 'Atru.chr10.2239' => 'acertr', 'Atru.chr3.3371' => 'acertr', 'Atru.chr6.3202' => 'acertr', 'AUR62006499' => 'cqu', 'AUR62012718' => 'cqu', 'AUR62021938' => 'cqu', 'AUR62023932' => 'cqu', 'AUR62025034' => 'cqu', 'AUR62025035' => 'cqu', 'AUR62038307' => 'cqu', 'AUR62043466' => 'cqu', 'BcaB02g10748' => 'bca', 'BcaB03g13231' => 'bca', 'BcaB03g14689' => 'bca', 'BcaB05g22716' => 'bca', 'BcaB06g28172' => 'bca', 'BcaB08g36413' => 'bca', 'BcaC01g02186' => 'bca', 'BcaC01g04272' => 'bca', 'BcaC02g08080' => 'bca', 'BcaC02g08227' => 'bca', 'BcaC03g13901' => 'bca', 'BcaC04g19593' => 'bca', 'BcaC04g20874' => 'bca', 'BcaC05g29557' => 'bca', 'BcaC06g35505' => 'bca', 'BcaC07g41954' => 'bca', 'BcaC07g41955' => 'bca', 'BcaC07g41956' => 'bca', 'BcaC07g42519' => 'bca', 'BcaC07g42520' => 'bca', 'BcaC07g42523' => 'bca', 'BcaC07g42524' => 'bca', 'BcaC07g42525' => 'bca', 'BcaC08g47480' => 'bca', 'BcaC08g47481' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00530' => 'bna', 'BolC2t07178H' => 'bol', 'BolC3t16567H' => 'bol', 'BolC4t27234H' => 'bol', 'BolC5t29728H' => 'bol', 'BolC5t34622H' => 'bol', 'BolC6t40321H' => 'bol', 'BolC7t42028H' => 'bol', 'BolC8t49125H' => 'bol', 'BolC8t52538H' => 'bol', 'BolC8t52539H' => 'bol', 'BolC9t56681H' => 'bol', 'BolC9t58266H' => 'bol', 'BolSC21t60294H' => 'bol', 'BraA02t05670Z' => 'bra', 'BraA03t12716Z' => 'bra', 'BraA04t17685Z' => 'bra', 'BraA05t22788Z' => 'bra', 'BraA06t24032Z' => 'bra', 'BraA06t25625Z' => 'bra', 'BraA07t27930Z' => 'bra', 'BraA08t35242Z' => 'bra', 'BraA09t38609Z' => 'bra', 'BraA10t43905Z' => 'bra', 'C02p11060' => 'bna', 'C03p42990' => 'bna', 'C03p67310' => 'bna', 'C04p56990' => 'bna', 'C04p58660' => 'bna', 'C05p09890' => 'bna', 'C05p59680' => 'bna', 'C06p19830' => 'bna', 'C06p53040' => 'bna', 'C07p15230' => 'bna', 'C08p50070' => 'bna', 'C08p50090' => 'bna', 'C09p38330' => 'bna', 'C09p53940' => 'bna', 'CAN.G1014.1' => 'can', 'CAN.G644.30' => 'can', 'CAN.G84.47' => 'can', 'CAN.G919.8' => 'can', 'CANSAT54G0113' => 'cansat', 'CANSAT54G1286' => 'cansat', 'CANSAT64G1020' => 'cansat', 'CARHR008080' => 'chi', 'CARHR008090' => 'chi', 'CARHR012130' => 'chi', 'CARHR038390' => 'chi', 'CARHR082330' => 'chi', 'CARHR120520' => 'chi', 'CARHR151470' => 'chi', 'CARHR190950' => 'chi', 'Carub.0001s0760' => 'cru', 'Carub.0001s1146' => 'cru', 'Carub.0003s0721' => 'cru', 'Carub.0004s0858' => 'cru', 'Carub.0005s1040' => 'cru', 'Carub.0006s2035' => 'cru', 'Carub.0015s0005' => 'cru', 'Ca_01607_v3' => 'car', 'Ca_01677_v3' => 'car', 'Ca_06087_v3' => 'car', 'Ca_19238_v3' => 'car', 'Ca_19373_v3' => 'car', 'Ca_21079_v3' => 'car', 'CBR_g54016' => 'cbr', 'CBR_g54018' => 'cbr', 'CBR_g54020' => 'cbr', 'Cc01_g09780' => 'ccan', 'Cc01_g11680' => 'ccan', 'Cc02_g15610' => 'ccan', 'Cc05_g04350' => 'ccan', 'Cc09_g01580' => 'ccan', 'CDE01G0795' => 'cde', 'CDE02G2024' => 'cde', 'CDE02G2260' => 'cde', 'CDE02G4561' => 'cde', 'CDE05G2733' => 'cde', 'CDE05G3422' => 'cde', 'CDE06G2003' => 'cde', 'CDE08G0576' => 'cde', 'CDE09G0048' => 'cde', 'CDE11G0805' => 'cde', 'Cfa003644' => 'cfa', 'Cfa006290' => 'cfa', 'Cfa010080' => 'cfa', 'Cfa011376' => 'cfa', 'Cfa011576' => 'cfa', 'Cfa011577' => 'cfa', 'Cfa014389' => 'cfa', 'Ciclev10006044m.g' => 'ccl', 'Ciclev10006954m.g' => 'ccl', 'Ciclev10015131m.g' => 'ccl', 'Ciclev10015580m.g' => 'ccl', 'Ciclev10028359m.g' => 'ccl', 'Ciclev10028573m.g' => 'ccl', 'CiPaw.03G159300' => 'cil', 'CiPaw.04G115100' => 'cil', 'CiPaw.09G092800' => 'cil', 'CiPaw.10G071800' => 'cil', 'CiPaw.13G105800' => 'cil', 'CiPaw.13G141000' => 'cil', 'CiPaw.14G103400' => 'cil', 'ClCG01G012700' => 'cla', 'ClCG01G012720' => 'cla', 'ClCG01G021920' => 'cla', 'ClCG02G008870' => 'cla', 'ClCG02G020840' => 'cla', 'ClCG02G021930' => 'cla', 'COL.COLO4_19302' => 'col', 'COL.COLO4_25262' => 'col', 'COL.COLO4_31788' => 'col', 'Cpa.g.c34684' => 'cpa', 'Cpa.g.c36520.1' => 'cpa', 'Cpa.g.c45626' => 'cpa', 'Cpa.g.sc121.17' => 'cpa', 'Cpa.g.sc13.22' => 'cpa', 'Cpa.g.sc87.88' => 'cpa', 'Cre06.g261800' => 'cre', 'CsaV3_1G014500' => 'csa', 'CsaV3_1G014510' => 'csa', 'CsaV3_2G034880' => 'csa', 'CsaV3_6G014760' => 'csa', 'CsaV3_6G021500' => 'csa', 'CsaV3_6G048980' => 'csa', 'CSS0002511' => 'camsi', 'CSS0007556' => 'camsi', 'CSS0008532' => 'camsi', 'CSS0009709' => 'camsi', 'CSS0010486' => 'camsi', 'CSS0016768' => 'camsi', 'CSS0023512' => 'camsi', 'CSS0025341' => 'camsi', 'CSS0027999' => 'camsi', 'CSS0028944' => 'camsi', 'CSS0032292' => 'camsi', 'CSS0032464' => 'camsi', 'CSS0037153' => 'camsi', 'CSS0039256' => 'camsi', 'CSS0048392' => 'camsi', 'CSS0050458' => 'camsi', 'DCAR_004224' => 'dca', 'DCAR_006147' => 'dca', 'DCAR_006465' => 'dca', 'DCAR_008159' => 'dca', 'DCAR_012164' => 'dca', 'DCAR_019764' => 'dca', 'Dinv05418' => 'din', 'Dinv10839' => 'din', 'Dinv12521' => 'din', 'Dinv13900' => 'din', 'Dinv29426' => 'din', 'Duzib150G0263' => 'dzi', 'Duzib168G1178' => 'dzi', 'Duzib168G1924' => 'dzi', 'Duzib170G0299' => 'dzi', 'Duzib170G0813' => 'dzi', 'Duzib235G1128' => 'dzi', 'Duzib248G1060' => 'dzi', 'ECA232G1910' => 'eca', 'ECA233G4621' => 'eca', 'ECA238G1216' => 'eca', 'ECA238G1784' => 'eca', 'ECA248G1242' => 'eca', 'EL10Ac8g20071' => 'bvu', 'EL10Ac9g21086' => 'bvu', 'EL10Ac9g22407' => 'bvu', 'EL10Ac9g22412' => 'bvu', 'Eucgr.A01119' => 'egr', 'Eucgr.E04043' => 'egr', 'Eucgr.J00428' => 'egr', 'Eucgr.J00958' => 'egr', 'FAN11G3091' => 'fan', 'FAN11G3651' => 'fan', 'FAN16G2566' => 'fan', 'FAN21G3155' => 'fan', 'FAN21G3400' => 'fan', 'FAN21G3543' => 'fan', 'FAN25G0234' => 'fan', 'FAN25G1422' => 'fan', 'FAN25G3392' => 'fan', 'FvH4_3g01940' => 'fve', 'FvH4_3g29870' => 'fve', 'FvH4_3g33680' => 'fve', 'Glyma.09G004200' => 'gma', 'Glyma.11G151288' => 'gma', 'Glyma.11G189100' => 'gma', 'Glyma.12G072500' => 'gma', 'Glyma.12G085500' => 'gma', 'Glyma.12G181800' => 'gma', 'Glyma.12G193000' => 'gma', 'Glyma.13G309300' => 'gma', 'Glyma.13G319000' => 'gma', 'Glyma.17G012600' => 'gma', 'Gohir.A06G148600' => 'ghi', 'Gohir.A07G115800' => 'ghi', 'Gohir.A08G003600' => 'ghi', 'Gohir.A09G093300' => 'ghi', 'Gohir.A09G105400' => 'ghi', 'Gohir.A09G105500' => 'ghi', 'Gohir.D06G154600' => 'ghi', 'Gohir.D07G120200' => 'ghi', 'Gohir.D08G013900' => 'ghi', 'Gohir.D09G093100' => 'ghi', 'Gohir.D09G102200' => 'ghi', 'Gohir.D09G102300' => 'ghi', 'Gorai.001G129400' => 'gra', 'Gorai.004G008200' => 'gra', 'Gorai.006G109800' => 'gra', 'Gorai.006G119500' => 'gra', 'Gorai.006G121300' => 'gra', 'Gorai.010G180700' => 'gra', 'GSVIVG01012716001' => 'vvi', 'GSVIVG01025118001' => 'vvi', 'GSVIVG01030439001' => 'vvi', 'GSVIVG01031397001' => 'vvi', 'HanXRQChr01g0004201' => 'han', 'HanXRQChr02g0054941' => 'han', 'HanXRQChr05g0141811' => 'han', 'HanXRQChr07g0197751' => 'han', 'HanXRQChr11g0346691' => 'han', 'HanXRQChr13g0396971' => 'han', 'HanXRQChr14g0432951' => 'han', 'HanXRQChr14g0452001' => 'han', 'HanXRQChr15g0496681' => 'han', 'HanXRQChr17g0557491' => 'han', 'HanXRQChr17g0557501' => 'han', 'Haze_06809' => 'cav', 'Haze_12852' => 'cav', 'Haze_15850' => 'cav', 'Haze_23446' => 'cav', 'Haze_23942' => 'cav', 'Haze_23943' => 'cav', 'Hma1.2p1_0091F.1_g046450' => 'hma', 'Hma1.2p1_0128F.1_g059910' => 'hma', 'Hma1.2p1_0249F.1_g102260' => 'hma', 'Hma1.2p1_0453F.1_g156190' => 'hma', 'Hma1.2p1_0695F.1_g204380' => 'hma', 'Hma1.2p1_0749F.1_g212650' => 'hma', 'Hma1.2p1_2156F.1_g315420' => 'hma', 'Hma1.2p1_2686F.1_g326940' => 'hma', 'HPP92_006428' => 'vpl', 'HPP92_012069' => 'vpl', 'HPP92_014129' => 'vpl', 'HPP92_014133' => 'vpl', 'HPP92_017315' => 'vpl', 'HPP92_026445' => 'vpl', 'HPP92_026446' => 'vpl', 'Hund00774' => 'sun', 'Hund07682' => 'sun', 'Hund21413' => 'sun', 'Hund23462' => 'sun', 'Hund23463' => 'sun', 'Lalb_Chr03g0027911' => 'lal', 'Lalb_Chr13g0304271' => 'lal', 'Lalb_Chr19g0137471' => 'lal', 'Lalb_Chr22g0350651' => 'lal', 'Lalb_Chr24g0395151' => 'lal', 'Lj1A1231T40' => 'lonja', 'Lj1A221T48' => 'lonja', 'Lj1C924T12' => 'lonja', 'Lj2C993G6' => 'lonja', 'Lj3g0005790' => 'lja', 'Lj3g0015432' => 'lja', 'Lj3g0017722' => 'lja', 'Lj3g0018497' => 'lja', 'Lj4g0025071' => 'lja', 'Lsat_1_v5_gn_1_129680' => 'lsa', 'Lsat_1_v5_gn_2_25321' => 'lsa', 'Lsat_1_v5_gn_2_95461' => 'lsa', 'Lsat_1_v5_gn_4_159620' => 'lsa', 'Lsat_1_v5_gn_6_41301' => 'lsa', 'Lsat_1_v5_gn_6_74660' => 'lsa', 'Lsat_1_v5_gn_7_11520' => 'lsa', 'Lsat_1_v5_gn_9_67680' => 'lsa', 'Manes.04G008300' => 'mes', 'Manes.04G008400' => 'mes', 'Manes.04G026500' => 'mes', 'Manes.10G135300' => 'mes', 'Manes.11G157300' => 'mes', 'Manes.12G074000' => 'mes', 'Manes.16G006200' => 'mes', 'Manes.17G026400' => 'mes', 'Mapoly0024s0086' => 'mpo', 'Mapoly0024s0087' => 'mpo', 'Mapoly0071s0057' => 'mpo', 'Mapoly0204s0012' => 'mpo', 'MBI04_g37681_MAGBIO' => 'mbi', 'MBI05_g17779_MAGBIO' => 'mbi', 'MBI12_g31184_MAGBIO' => 'mbi', 'MBI17_g11083_MAGBIO' => 'mbi', 'MBI18_g03883_MAGBIO' => 'mbi', 'MBI18_g28940_MAGBIO' => 'mbi', 'MCO01G690' => 'mco', 'MD03G1109900' => 'mdo', 'MD03G1134800' => 'mdo', 'MD05G1348000' => 'mdo', 'MD10G1322400' => 'mdo', 'MD11G1123300' => 'mdo', 'MD11G1157600' => 'mdo', 'Medtr2g084875' => 'mtr', 'Medtr2g088130' => 'mtr', 'Medtr4g055310' => 'mtr', 'Medtr4g061070' => 'mtr', 'Medtr4g132250' => 'mtr', 'MELO3C004795.2' => 'cme', 'MELO3C004797.2' => 'cme', 'MELO3C007396.2' => 'cme', 'MELO3C019277.2' => 'cme', 'MELO3C021449.2' => 'cme', 'MELO3C025736.2' => 'cme', 'Migut.D02175' => 'egut', 'Migut.H01573' => 'egut', 'Migut.M01327' => 'egut', 'Migut.N02513' => 'egut', 'MSTRG.14638' => 'ama', 'MSTRG.18632' => 'ama', 'MSTRG.7203' => 'ama', 'Nitab4.5_0000533g0140' => 'nta', 'Nitab4.5_0000888g0150' => 'nta', 'Nitab4.5_0001453g0040' => 'nta', 'Nitab4.5_0002827g0090' => 'nta', 'Nitab4.5_0003082g0040' => 'nta', 'Nitab4.5_0007799g0040' => 'nta', 'Nitab4.5_0008983g0010' => 'nta', 'Nitab4.5_0009017g0020' => 'nta', 'Nn1g02132' => 'nnu', 'Nn1g03492' => 'nnu', 'Nn1g03493' => 'nnu', 'Nn1g03494' => 'nnu', 'Nn1g07164' => 'nnu', 'Nn1g07291' => 'nnu', 'Nn2g10655' => 'nnu', 'Nn2g11652' => 'nnu', 'Nn2g14008' => 'nnu', 'Nn3g17476' => 'nnu', 'Nn3g17477' => 'nnu', 'Nn4g22370' => 'nnu', 'Nn4g25255' => 'nnu', 'Nn5g27755' => 'nnu', 'Nn6g34260' => 'nnu', 'Nn6g35041' => 'nnu', 'Oeu005924.1' => 'oeu', 'Oeu008383.1' => 'oeu', 'Oeu014928.1' => 'oeu', 'Oeu019889.1' => 'oeu', 'Oeu022271.1' => 'oeu', 'Oeu025271.1' => 'oeu', 'Oeu036302.1' => 'oeu', 'Oeu044100.1' => 'oeu', 'Os01g0528300' => 'osa', 'Os03g0286200' => 'osa', 'Os04g0406600' => 'osa', 'Os07g0512000' => 'osa', 'Os07g0694600' => 'osa', 'Os08g0411000' => 'osa', 'Os09g0565700' => 'osa', 'Os09g0566050' => 'osa', 'Os10g0523700' => 'osa', 'Peaxi162Scf00002g00514' => 'pax', 'Peaxi162Scf00047g01817' => 'pax', 'Peaxi162Scf00114g00001' => 'pax', 'Peaxi162Scf00147g00613' => 'pax', 'Peaxi162Scf00389g00425' => 'pax', 'PGR042G1139' => 'pgr', 'PGR042G3273' => 'pgr', 'PGR102G2180' => 'pgr', 'PGR119G0234' => 'pgr', 'PGR119G0668' => 'pgr', 'PGSC0003DMG400007122' => 'stu', 'PGSC0003DMG400016478' => 'stu', 'PGSC0003DMG400025374' => 'stu', 'PGSC0003DMG400026536' => 'stu', 'Phvul.003G079600' => 'pvu', 'Phvul.005G115600' => 'pvu', 'Phvul.005G127100' => 'pvu', 'Phvul.006G149500' => 'pvu', 'Phvul.006G149600' => 'pvu', 'Phvul.011G071800' => 'pvu', 'Phvul.011G090400' => 'pvu', 'Potri.004G013400' => 'ptr', 'Potri.004G188100' => 'ptr', 'Potri.008G195500' => 'ptr', 'Potri.009G148800' => 'ptr', 'Potri.011G004700' => 'ptr', 'Pp3c17_22810' => 'ppa', 'Pp3c18_4480' => 'ppa', 'Pp3c19_13030' => 'ppa', 'Pp3c1_33620' => 'ppa', 'Pp3c2_9380' => 'ppa', 'PRCOL_00001023' => 'pco', 'Prupe.3G216300' => 'ppe', 'Prupe.4G019500' => 'ppe', 'Prupe.6G092500' => 'ppe', 'Prupe.6G119200' => 'ppe', 'Psat0s1945g0080' => 'psa', 'Psat0s4167g0040' => 'psa', 'Psat1g185800' => 'psa', 'Psat4g006440' => 'psa', 'Psat4g006480' => 'psa', 'Psat4g168120' => 'psa', 'Psat5g255680' => 'psa', 'Psat5g261760' => 'psa', 'Psat7g222120' => 'psa', 'PSO063G7252' => 'pso', 'PSO170G4778' => 'pso', 'PSO210G2249' => 'pso', 'PSO339G2411' => 'pso', 'PSO339G2457' => 'pso', 'PSO339G2854' => 'pso', 'PSO339G4288' => 'pso', 'PSO339G4615' => 'pso', 'PSO384G2796' => 'pso', 'PSO384G2940' => 'pso', 'PSO384G4227' => 'pso', 'PSO478G1425' => 'pso', 'PSO541G3863' => 'pso', 'PSO675G0507' => 'pso', 'PSO782G0338' => 'pso', 'PSO832G0644' => 'pso', 'QL01p013664' => 'qlo', 'QL01p036598' => 'qlo', 'QL05p072984' => 'qlo', 'QL08p005768' => 'qlo', 'QL08p032743' => 'qlo', 'QL93p0073_0439' => 'qlo', 'QL93p0073_0444' => 'qlo', 'RcHm_v2.0_Chr5g0002851' => 'rch', 'RcHm_v2.0_Chr5g0055201' => 'rch', 'RcHm_v2.0_Chr5g0061191' => 'rch', 'RcHm_v2.0_Chr7g0203231' => 'rch', 'Rhsim01G0208100' => 'rsi', 'Rhsim01G0208200' => 'rsi', 'Rhsim02G0106500' => 'rsi', 'Rhsim03G0107900' => 'rsi', 'Rhsim06G0163400' => 'rsi', 'Rhsim13G0105200' => 'rsi', 'Sabra04G0006300' => 'sbr', 'Sabra04G0127000' => 'sbr', 'Sabra08G0148700' => 'sbr', 'Sabra09G0117400' => 'sbr', 'SalBow1G3326' => 'sbo', 'SalBow3G3228' => 'sbo', 'SalBow6G1634' => 'sbo', 'SalBow6G3603' => 'sbo', 'SalBow6G5266' => 'sbo', 'SalBow7G2265' => 'sbo', 'SalBow8G0850' => 'sbo', 'SalBow8G2592' => 'sbo', 'Sc05g0009240' => 'sci', 'Sc12g0002300' => 'sci', 'Sc21g0000100' => 'sci', 'Sc21g0004720' => 'sci', 'Sed0002949' => 'sed', 'Sed0004114' => 'sed', 'Sed0004306' => 'sed', 'Sed0006172' => 'sed', 'Sed0008413' => 'sed', 'Sed0013809' => 'sed', 'Sed0019556' => 'sed', 'SEGI_03570' => 'sgi', 'SEGI_07859' => 'sgi', 'SEGI_15042' => 'sgi', 'SEGI_16263' => 'sgi', 'SEGI_16552' => 'sgi', 'SEGI_24331' => 'sgi', 'SEGI_27316' => 'sgi', 'SEGI_29521' => 'sgi', 'SEGI_41342' => 'sgi', 'SGA_v2.0_scaffold27G11617' => 'sas', 'SGA_v2.0_scaffold316G48428' => 'sas', 'SGA_v2.0_scaffold49G18261' => 'sas', 'SGA_v2.0_scaffold7G03831' => 'sas', 'SGA_v2.0_scaffold93G28359' => 'sas', 'SHI02210' => 'shi', 'SHI06028' => 'shi', 'SHI06321' => 'shi', 'SMO111G0012' => 'smo', 'SMO228G0080' => 'smo', 'SMO356G0756' => 'smo', 'Solyc02g080620.3' => 'sly', 'Solyc06g074530.1' => 'sly', 'Solyc11g066890.1' => 'sly', 'Solyc11g072520.3' => 'sly', 'Sopen02g025330' => 'spe', 'Sopen06g031000' => 'spe', 'Sopen09g008240' => 'spe', 'Sopen09g025210' => 'spe', 'Sopen11g026600' => 'spe', 'Sopen11g030170' => 'spe', 'Sp1g10420' => 'spa', 'Sp3g06570' => 'spa', 'Sp4g10660' => 'spa', 'Sp5g16460' => 'spa', 'Sp6g22710' => 'spa', 'TAR365G0112' => 'tar', 'TAR369G0717' => 'tar', 'TAR374G0976' => 'tar', 'TAR623G1128' => 'tar', 'TAR626G1937' => 'tar', 'TAR627G0123' => 'tar', 'TAR628G0305' => 'tar', 'TAR636G1176' => 'tar', 'TAR636G2442' => 'tar', 'THA.LOC104800556' => 'tha', 'THA.LOC104809501' => 'tha', 'THA.LOC104815126' => 'tha', 'THA.LOC104815732' => 'tha', 'THA.LOC104823528' => 'tha', 'Thecc.02G365600' => 'tca', 'Thecc.06G222300' => 'tca', 'Thecc.09G261800' => 'tca', 'Thecc.09G291400' => 'tca', 'Thhalv10003028m.g' => 'esa', 'Thhalv10007886m.g' => 'esa', 'Thhalv10016085m.g' => 'esa', 'Thhalv10016681m.g' => 'esa', 'Thhalv10020951m.g' => 'esa', 'TPR.G15598' => 'tpr', 'TPR.G29305' => 'tpr', 'TPR.G32395' => 'tpr', 'TPR.G36998' => 'tpr', 'TPR.G4227' => 'tpr', 'TWI18G1433' => 'twi', 'TWI31G0755' => 'twi', 'TWI38G0912' => 'twi', 'TWI75G1097' => 'twi', 'TWI75G1619' => 'twi', 'TWI79G1336' => 'twi', 'unitig_0.g943' => 'ugi', 'unitig_0.g944' => 'ugi', 'unitig_22.g6646' => 'ugi', 'unitig_37.g12681' => 'ugi', 'unitig_8.g3290' => 'ugi', 'vmacro03278' => 'vma', 'vmacro12197' => 'vma', 'vmacro14478' => 'vma', 'vmacro15787' => 'vma', 'vmacro15789' => 'vma', 'vmacro15790' => 'vma', 'vmacro15806' => 'vma', 'vmacro22907' => 'vma', 'vmacro22908' => 'vma', 'vmacro22909' => 'vma', 'vmacro23108' => 'vma', 'VMungo0540G0540' => 'vmu', 'VMungo0540G2468' => 'vmu', 'VMungo1080G0390' => 'vmu', 'VMungo1080G1165' => 'vmu', 'VMungo1127G0170' => 'vmu', 'VMungo1127G2099' => 'vmu', 'VMungo1215G3013' => 'vmu', 'Zm00001eb013110' => 'zma', 'Zm00001eb084260' => 'zma', 'Zm00001eb096110' => 'zma', 'Zm00001eb217510' => 'zma', 'Zm00001eb322550' => 'zma', 'Zm00001eb390770' => 'zma', 'Zm00001eb397170' => 'zma', 'Zm00001eb404610' => 'zma', 'Zm00001eb421790' => 'zma' ), 'gf_id' => 'HOM05D000911', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000911' ), 'data_identifier' => 'HOM05D000911', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000911', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27780' => 'bna', 'A03p35380' => 'bna', 'A04p21160' => 'bna', 'A05p40570' => 'bna', 'A06p26900' => 'bna', 'A08p33230' => 'bna', 'A09p65960' => 'bna', 'A10p18290' => 'bna', 'Aa31LG1G12990' => 'aar', 'Aa31LG1G2980' => 'aar', 'Aa31LG4G14320' => 'aar', 'Aa31LG7G11800' => 'aar', 'Aa31sc36G50' => 'aar', 'Aa31sc36G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3721' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5459' => 'aag', 'Actinidia03028' => 'ach', 'Actinidia03753' => 'ach', 'Actinidia04187' => 'ach', 'Actinidia05509' => 'ach', 'Actinidia24180' => 'ach', 'Actinidia26906' => 'ach', 'Actinidia37097' => 'ach', 'Actinidia38249' => 'ach', 'Ah.01g003470' => 'amhyb', 'Ah.01g004580' => 'amhyb', 'Ah.01g014850' => 'amhyb', 'Ah.01g016830' => 'amhyb', 'Ah.14g088000' => 'amhyb', 'AL1G22980' => 'aly', 'AL3G18990' => 'aly', 'AL4G22440' => 'aly', 'AL4G33180' => 'aly', 'AL5G22920' => 'aly', 'AL6G33660' => 'aly', 'AL8G20720' => 'aly', 'Aqoxy1G00935' => 'aox', 'Aqoxy1G02094' => 'aox', 'Aqoxy2G01239' => 'aox', 'Aqoxy4G01870' => 'aox', 'Aqoxy7G00450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.36ZVTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71EM27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5D6C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH3WRE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3NCM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RIM768' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YB5YRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z36GDV' => 'arhy', 'AT1G08250' => 'ath', 'AT1G11790' => 'ath', 'AT2G27820' => 'ath', 'AT3G07630' => 'ath', 'AT3G44720' => 'ath', 'AT5G22630' => 'ath', 'ATR0693G304' => 'atr', 'ATR0794G109' => 'atr', 'ATR0820G120' => 'atr', 'ATR1159G064' => 'atr', 'Atru.chr10.2239' => 'acertr', 'Atru.chr3.3371' => 'acertr', 'Atru.chr6.3202' => 'acertr', 'AUR62006499' => 'cqu', 'AUR62012718' => 'cqu', 'AUR62021938' => 'cqu', 'AUR62023932' => 'cqu', 'AUR62025034' => 'cqu', 'AUR62025035' => 'cqu', 'AUR62038307' => 'cqu', 'AUR62043466' => 'cqu', 'BcaB02g10748' => 'bca', 'BcaB03g13231' => 'bca', 'BcaB03g14689' => 'bca', 'BcaB05g22716' => 'bca', 'BcaB06g28172' => 'bca', 'BcaB08g36413' => 'bca', 'BcaC01g02186' => 'bca', 'BcaC01g04272' => 'bca', 'BcaC02g08080' => 'bca', 'BcaC02g08227' => 'bca', 'BcaC03g13901' => 'bca', 'BcaC04g19593' => 'bca', 'BcaC04g20874' => 'bca', 'BcaC05g29557' => 'bca', 'BcaC06g35505' => 'bca', 'BcaC07g41954' => 'bca', 'BcaC07g41955' => 'bca', 'BcaC07g41956' => 'bca', 'BcaC07g42519' => 'bca', 'BcaC07g42520' => 'bca', 'BcaC07g42523' => 'bca', 'BcaC07g42524' => 'bca', 'BcaC07g42525' => 'bca', 'BcaC08g47480' => 'bca', 'BcaC08g47481' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00530' => 'bna', 'BolC2t07178H' => 'bol', 'BolC3t16567H' => 'bol', 'BolC4t27234H' => 'bol', 'BolC5t29728H' => 'bol', 'BolC5t34622H' => 'bol', 'BolC6t40321H' => 'bol', 'BolC7t42028H' => 'bol', 'BolC8t49125H' => 'bol', 'BolC8t52538H' => 'bol', 'BolC8t52539H' => 'bol', 'BolC9t56681H' => 'bol', 'BolC9t58266H' => 'bol', 'BolSC21t60294H' => 'bol', 'BraA02t05670Z' => 'bra', 'BraA03t12716Z' => 'bra', 'BraA04t17685Z' => 'bra', 'BraA05t22788Z' => 'bra', 'BraA06t24032Z' => 'bra', 'BraA06t25625Z' => 'bra', 'BraA07t27930Z' => 'bra', 'BraA08t35242Z' => 'bra', 'BraA09t38609Z' => 'bra', 'BraA10t43905Z' => 'bra', 'C02p11060' => 'bna', 'C03p42990' => 'bna', 'C03p67310' => 'bna', 'C04p56990' => 'bna', 'C04p58660' => 'bna', 'C05p09890' => 'bna', 'C05p59680' => 'bna', 'C06p19830' => 'bna', 'C06p53040' => 'bna', 'C07p15230' => 'bna', 'C08p50070' => 'bna', 'C08p50090' => 'bna', 'C09p38330' => 'bna', 'C09p53940' => 'bna', 'CAN.G1014.1' => 'can', 'CAN.G644.30' => 'can', 'CAN.G84.47' => 'can', 'CAN.G919.8' => 'can', 'CANSAT54G0113' => 'cansat', 'CANSAT54G1286' => 'cansat', 'CANSAT64G1020' => 'cansat', 'CARHR008080' => 'chi', 'CARHR008090' => 'chi', 'CARHR012130' => 'chi', 'CARHR038390' => 'chi', 'CARHR082330' => 'chi', 'CARHR120520' => 'chi', 'CARHR151470' => 'chi', 'CARHR190950' => 'chi', 'Carub.0001s0760' => 'cru', 'Carub.0001s1146' => 'cru', 'Carub.0003s0721' => 'cru', 'Carub.0004s0858' => 'cru', 'Carub.0005s1040' => 'cru', 'Carub.0006s2035' => 'cru', 'Carub.0015s0005' => 'cru', 'Ca_01607_v3' => 'car', 'Ca_01677_v3' => 'car', 'Ca_06087_v3' => 'car', 'Ca_19238_v3' => 'car', 'Ca_19373_v3' => 'car', 'Ca_21079_v3' => 'car', 'CBR_g54016' => 'cbr', 'CBR_g54018' => 'cbr', 'CBR_g54020' => 'cbr', 'Cc01_g09780' => 'ccan', 'Cc01_g11680' => 'ccan', 'Cc02_g15610' => 'ccan', 'Cc05_g04350' => 'ccan', 'Cc09_g01580' => 'ccan', 'CDE01G0795' => 'cde', 'CDE02G2024' => 'cde', 'CDE02G2260' => 'cde', 'CDE02G4561' => 'cde', 'CDE05G2733' => 'cde', 'CDE05G3422' => 'cde', 'CDE06G2003' => 'cde', 'CDE08G0576' => 'cde', 'CDE09G0048' => 'cde', 'CDE11G0805' => 'cde', 'Cfa003644' => 'cfa', 'Cfa006290' => 'cfa', 'Cfa010080' => 'cfa', 'Cfa011376' => 'cfa', 'Cfa011576' => 'cfa', 'Cfa011577' => 'cfa', 'Cfa014389' => 'cfa', 'Ciclev10006044m.g' => 'ccl', 'Ciclev10006954m.g' => 'ccl', 'Ciclev10015131m.g' => 'ccl', 'Ciclev10015580m.g' => 'ccl', 'Ciclev10028359m.g' => 'ccl', 'Ciclev10028573m.g' => 'ccl', 'CiPaw.03G159300' => 'cil', 'CiPaw.04G115100' => 'cil', 'CiPaw.09G092800' => 'cil', 'CiPaw.10G071800' => 'cil', 'CiPaw.13G105800' => 'cil', 'CiPaw.13G141000' => 'cil', 'CiPaw.14G103400' => 'cil', 'ClCG01G012700' => 'cla', 'ClCG01G012720' => 'cla', 'ClCG01G021920' => 'cla', 'ClCG02G008870' => 'cla', 'ClCG02G020840' => 'cla', 'ClCG02G021930' => 'cla', 'COL.COLO4_19302' => 'col', 'COL.COLO4_25262' => 'col', 'COL.COLO4_31788' => 'col', 'Cpa.g.c34684' => 'cpa', 'Cpa.g.c36520.1' => 'cpa', 'Cpa.g.c45626' => 'cpa', 'Cpa.g.sc121.17' => 'cpa', 'Cpa.g.sc13.22' => 'cpa', 'Cpa.g.sc87.88' => 'cpa', 'Cre06.g261800' => 'cre', 'CsaV3_1G014500' => 'csa', 'CsaV3_1G014510' => 'csa', 'CsaV3_2G034880' => 'csa', 'CsaV3_6G014760' => 'csa', 'CsaV3_6G021500' => 'csa', 'CsaV3_6G048980' => 'csa', 'CSS0002511' => 'camsi', 'CSS0007556' => 'camsi', 'CSS0008532' => 'camsi', 'CSS0009709' => 'camsi', 'CSS0010486' => 'camsi', 'CSS0016768' => 'camsi', 'CSS0023512' => 'camsi', 'CSS0025341' => 'camsi', 'CSS0027999' => 'camsi', 'CSS0028944' => 'camsi', 'CSS0032292' => 'camsi', 'CSS0032464' => 'camsi', 'CSS0037153' => 'camsi', 'CSS0039256' => 'camsi', 'CSS0048392' => 'camsi', 'CSS0050458' => 'camsi', 'DCAR_004224' => 'dca', 'DCAR_006147' => 'dca', 'DCAR_006465' => 'dca', 'DCAR_008159' => 'dca', 'DCAR_012164' => 'dca', 'DCAR_019764' => 'dca', 'Dinv05418' => 'din', 'Dinv10839' => 'din', 'Dinv12521' => 'din', 'Dinv13900' => 'din', 'Dinv29426' => 'din', 'Duzib150G0263' => 'dzi', 'Duzib168G1178' => 'dzi', 'Duzib168G1924' => 'dzi', 'Duzib170G0299' => 'dzi', 'Duzib170G0813' => 'dzi', 'Duzib235G1128' => 'dzi', 'Duzib248G1060' => 'dzi', 'ECA232G1910' => 'eca', 'ECA233G4621' => 'eca', 'ECA238G1216' => 'eca', 'ECA238G1784' => 'eca', 'ECA248G1242' => 'eca', 'EL10Ac8g20071' => 'bvu', 'EL10Ac9g21086' => 'bvu', 'EL10Ac9g22407' => 'bvu', 'EL10Ac9g22412' => 'bvu', 'Eucgr.A01119' => 'egr', 'Eucgr.E04043' => 'egr', 'Eucgr.J00428' => 'egr', 'Eucgr.J00958' => 'egr', 'FAN11G3091' => 'fan', 'FAN11G3651' => 'fan', 'FAN16G2566' => 'fan', 'FAN21G3155' => 'fan', 'FAN21G3400' => 'fan', 'FAN21G3543' => 'fan', 'FAN25G0234' => 'fan', 'FAN25G1422' => 'fan', 'FAN25G3392' => 'fan', 'FvH4_3g01940' => 'fve', 'FvH4_3g29870' => 'fve', 'FvH4_3g33680' => 'fve', 'Glyma.09G004200' => 'gma', 'Glyma.11G151288' => 'gma', 'Glyma.11G189100' => 'gma', 'Glyma.12G072500' => 'gma', 'Glyma.12G085500' => 'gma', 'Glyma.12G181800' => 'gma', 'Glyma.12G193000' => 'gma', 'Glyma.13G309300' => 'gma', 'Glyma.13G319000' => 'gma', 'Glyma.17G012600' => 'gma', 'Gohir.A06G148600' => 'ghi', 'Gohir.A07G115800' => 'ghi', 'Gohir.A08G003600' => 'ghi', 'Gohir.A09G093300' => 'ghi', 'Gohir.A09G105400' => 'ghi', 'Gohir.A09G105500' => 'ghi', 'Gohir.D06G154600' => 'ghi', 'Gohir.D07G120200' => 'ghi', 'Gohir.D08G013900' => 'ghi', 'Gohir.D09G093100' => 'ghi', 'Gohir.D09G102200' => 'ghi', 'Gohir.D09G102300' => 'ghi', 'Gorai.001G129400' => 'gra', 'Gorai.004G008200' => 'gra', 'Gorai.006G109800' => 'gra', 'Gorai.006G119500' => 'gra', 'Gorai.006G121300' => 'gra', 'Gorai.010G180700' => 'gra', 'GSVIVG01012716001' => 'vvi', 'GSVIVG01025118001' => 'vvi', 'GSVIVG01030439001' => 'vvi', 'GSVIVG01031397001' => 'vvi', 'HanXRQChr01g0004201' => 'han', 'HanXRQChr02g0054941' => 'han', 'HanXRQChr05g0141811' => 'han', 'HanXRQChr07g0197751' => 'han', 'HanXRQChr11g0346691' => 'han', 'HanXRQChr13g0396971' => 'han', 'HanXRQChr14g0432951' => 'han', 'HanXRQChr14g0452001' => 'han', 'HanXRQChr15g0496681' => 'han', 'HanXRQChr17g0557491' => 'han', 'HanXRQChr17g0557501' => 'han', 'Haze_06809' => 'cav', 'Haze_12852' => 'cav', 'Haze_15850' => 'cav', 'Haze_23446' => 'cav', 'Haze_23942' => 'cav', 'Haze_23943' => 'cav', 'Hma1.2p1_0091F.1_g046450' => 'hma', 'Hma1.2p1_0128F.1_g059910' => 'hma', 'Hma1.2p1_0249F.1_g102260' => 'hma', 'Hma1.2p1_0453F.1_g156190' => 'hma', 'Hma1.2p1_0695F.1_g204380' => 'hma', 'Hma1.2p1_0749F.1_g212650' => 'hma', 'Hma1.2p1_2156F.1_g315420' => 'hma', 'Hma1.2p1_2686F.1_g326940' => 'hma', 'HPP92_006428' => 'vpl', 'HPP92_012069' => 'vpl', 'HPP92_014129' => 'vpl', 'HPP92_014133' => 'vpl', 'HPP92_017315' => 'vpl', 'HPP92_026445' => 'vpl', 'HPP92_026446' => 'vpl', 'Hund00774' => 'sun', 'Hund07682' => 'sun', 'Hund21413' => 'sun', 'Hund23462' => 'sun', 'Hund23463' => 'sun', 'Lalb_Chr03g0027911' => 'lal', 'Lalb_Chr13g0304271' => 'lal', 'Lalb_Chr19g0137471' => 'lal', 'Lalb_Chr22g0350651' => 'lal', 'Lalb_Chr24g0395151' => 'lal', 'Lj1A1231T40' => 'lonja', 'Lj1A221T48' => 'lonja', 'Lj1C924T12' => 'lonja', 'Lj2C993G6' => 'lonja', 'Lj3g0005790' => 'lja', 'Lj3g0015432' => 'lja', 'Lj3g0017722' => 'lja', 'Lj3g0018497' => 'lja', 'Lj4g0025071' => 'lja', 'Lsat_1_v5_gn_1_129680' => 'lsa', 'Lsat_1_v5_gn_2_25321' => 'lsa', 'Lsat_1_v5_gn_2_95461' => 'lsa', 'Lsat_1_v5_gn_4_159620' => 'lsa', 'Lsat_1_v5_gn_6_41301' => 'lsa', 'Lsat_1_v5_gn_6_74660' => 'lsa', 'Lsat_1_v5_gn_7_11520' => 'lsa', 'Lsat_1_v5_gn_9_67680' => 'lsa', 'Manes.04G008300' => 'mes', 'Manes.04G008400' => 'mes', 'Manes.04G026500' => 'mes', 'Manes.10G135300' => 'mes', 'Manes.11G157300' => 'mes', 'Manes.12G074000' => 'mes', 'Manes.16G006200' => 'mes', 'Manes.17G026400' => 'mes', 'Mapoly0024s0086' => 'mpo', 'Mapoly0024s0087' => 'mpo', 'Mapoly0071s0057' => 'mpo', 'Mapoly0204s0012' => 'mpo', 'MBI04_g37681_MAGBIO' => 'mbi', 'MBI05_g17779_MAGBIO' => 'mbi', 'MBI12_g31184_MAGBIO' => 'mbi', 'MBI17_g11083_MAGBIO' => 'mbi', 'MBI18_g03883_MAGBIO' => 'mbi', 'MBI18_g28940_MAGBIO' => 'mbi', 'MCO01G690' => 'mco', 'MD03G1109900' => 'mdo', 'MD03G1134800' => 'mdo', 'MD05G1348000' => 'mdo', 'MD10G1322400' => 'mdo', 'MD11G1123300' => 'mdo', 'MD11G1157600' => 'mdo', 'Medtr2g084875' => 'mtr', 'Medtr2g088130' => 'mtr', 'Medtr4g055310' => 'mtr', 'Medtr4g061070' => 'mtr', 'Medtr4g132250' => 'mtr', 'MELO3C004795.2' => 'cme', 'MELO3C004797.2' => 'cme', 'MELO3C007396.2' => 'cme', 'MELO3C019277.2' => 'cme', 'MELO3C021449.2' => 'cme', 'MELO3C025736.2' => 'cme', 'Migut.D02175' => 'egut', 'Migut.H01573' => 'egut', 'Migut.M01327' => 'egut', 'Migut.N02513' => 'egut', 'MSTRG.14638' => 'ama', 'MSTRG.18632' => 'ama', 'MSTRG.7203' => 'ama', 'Nitab4.5_0000533g0140' => 'nta', 'Nitab4.5_0000888g0150' => 'nta', 'Nitab4.5_0001453g0040' => 'nta', 'Nitab4.5_0002827g0090' => 'nta', 'Nitab4.5_0003082g0040' => 'nta', 'Nitab4.5_0007799g0040' => 'nta', 'Nitab4.5_0008983g0010' => 'nta', 'Nitab4.5_0009017g0020' => 'nta', 'Nn1g02132' => 'nnu', 'Nn1g03492' => 'nnu', 'Nn1g03493' => 'nnu', 'Nn1g03494' => 'nnu', 'Nn1g07164' => 'nnu', 'Nn1g07291' => 'nnu', 'Nn2g10655' => 'nnu', 'Nn2g11652' => 'nnu', 'Nn2g14008' => 'nnu', 'Nn3g17476' => 'nnu', 'Nn3g17477' => 'nnu', 'Nn4g22370' => 'nnu', 'Nn4g25255' => 'nnu', 'Nn5g27755' => 'nnu', 'Nn6g34260' => 'nnu', 'Nn6g35041' => 'nnu', 'Oeu005924.1' => 'oeu', 'Oeu008383.1' => 'oeu', 'Oeu014928.1' => 'oeu', 'Oeu019889.1' => 'oeu', 'Oeu022271.1' => 'oeu', 'Oeu025271.1' => 'oeu', 'Oeu036302.1' => 'oeu', 'Oeu044100.1' => 'oeu', 'Os01g0528300' => 'osa', 'Os03g0286200' => 'osa', 'Os04g0406600' => 'osa', 'Os07g0512000' => 'osa', 'Os07g0694600' => 'osa', 'Os08g0411000' => 'osa', 'Os09g0565700' => 'osa', 'Os09g0566050' => 'osa', 'Os10g0523700' => 'osa', 'Peaxi162Scf00002g00514' => 'pax', 'Peaxi162Scf00047g01817' => 'pax', 'Peaxi162Scf00114g00001' => 'pax', 'Peaxi162Scf00147g00613' => 'pax', 'Peaxi162Scf00389g00425' => 'pax', 'PGR042G1139' => 'pgr', 'PGR042G3273' => 'pgr', 'PGR102G2180' => 'pgr', 'PGR119G0234' => 'pgr', 'PGR119G0668' => 'pgr', 'PGSC0003DMG400007122' => 'stu', 'PGSC0003DMG400016478' => 'stu', 'PGSC0003DMG400025374' => 'stu', 'PGSC0003DMG400026536' => 'stu', 'Phvul.003G079600' => 'pvu', 'Phvul.005G115600' => 'pvu', 'Phvul.005G127100' => 'pvu', 'Phvul.006G149500' => 'pvu', 'Phvul.006G149600' => 'pvu', 'Phvul.011G071800' => 'pvu', 'Phvul.011G090400' => 'pvu', 'Potri.004G013400' => 'ptr', 'Potri.004G188100' => 'ptr', 'Potri.008G195500' => 'ptr', 'Potri.009G148800' => 'ptr', 'Potri.011G004700' => 'ptr', 'Pp3c17_22810' => 'ppa', 'Pp3c18_4480' => 'ppa', 'Pp3c19_13030' => 'ppa', 'Pp3c1_33620' => 'ppa', 'Pp3c2_9380' => 'ppa', 'PRCOL_00001023' => 'pco', 'Prupe.3G216300' => 'ppe', 'Prupe.4G019500' => 'ppe', 'Prupe.6G092500' => 'ppe', 'Prupe.6G119200' => 'ppe', 'Psat0s1945g0080' => 'psa', 'Psat0s4167g0040' => 'psa', 'Psat1g185800' => 'psa', 'Psat4g006440' => 'psa', 'Psat4g006480' => 'psa', 'Psat4g168120' => 'psa', 'Psat5g255680' => 'psa', 'Psat5g261760' => 'psa', 'Psat7g222120' => 'psa', 'PSO063G7252' => 'pso', 'PSO170G4778' => 'pso', 'PSO210G2249' => 'pso', 'PSO339G2411' => 'pso', 'PSO339G2457' => 'pso', 'PSO339G2854' => 'pso', 'PSO339G4288' => 'pso', 'PSO339G4615' => 'pso', 'PSO384G2796' => 'pso', 'PSO384G2940' => 'pso', 'PSO384G4227' => 'pso', 'PSO478G1425' => 'pso', 'PSO541G3863' => 'pso', 'PSO675G0507' => 'pso', 'PSO782G0338' => 'pso', 'PSO832G0644' => 'pso', 'QL01p013664' => 'qlo', 'QL01p036598' => 'qlo', 'QL05p072984' => 'qlo', 'QL08p005768' => 'qlo', 'QL08p032743' => 'qlo', 'QL93p0073_0439' => 'qlo', 'QL93p0073_0444' => 'qlo', 'RcHm_v2.0_Chr5g0002851' => 'rch', 'RcHm_v2.0_Chr5g0055201' => 'rch', 'RcHm_v2.0_Chr5g0061191' => 'rch', 'RcHm_v2.0_Chr7g0203231' => 'rch', 'Rhsim01G0208100' => 'rsi', 'Rhsim01G0208200' => 'rsi', 'Rhsim02G0106500' => 'rsi', 'Rhsim03G0107900' => 'rsi', 'Rhsim06G0163400' => 'rsi', 'Rhsim13G0105200' => 'rsi', 'Sabra04G0006300' => 'sbr', 'Sabra04G0127000' => 'sbr', 'Sabra08G0148700' => 'sbr', 'Sabra09G0117400' => 'sbr', 'SalBow1G3326' => 'sbo', 'SalBow3G3228' => 'sbo', 'SalBow6G1634' => 'sbo', 'SalBow6G3603' => 'sbo', 'SalBow6G5266' => 'sbo', 'SalBow7G2265' => 'sbo', 'SalBow8G0850' => 'sbo', 'SalBow8G2592' => 'sbo', 'Sc05g0009240' => 'sci', 'Sc12g0002300' => 'sci', 'Sc21g0000100' => 'sci', 'Sc21g0004720' => 'sci', 'Sed0002949' => 'sed', 'Sed0004114' => 'sed', 'Sed0004306' => 'sed', 'Sed0006172' => 'sed', 'Sed0008413' => 'sed', 'Sed0013809' => 'sed', 'Sed0019556' => 'sed', 'SEGI_03570' => 'sgi', 'SEGI_07859' => 'sgi', 'SEGI_15042' => 'sgi', 'SEGI_16263' => 'sgi', 'SEGI_16552' => 'sgi', 'SEGI_24331' => 'sgi', 'SEGI_27316' => 'sgi', 'SEGI_29521' => 'sgi', 'SEGI_41342' => 'sgi', 'SGA_v2.0_scaffold27G11617' => 'sas', 'SGA_v2.0_scaffold316G48428' => 'sas', 'SGA_v2.0_scaffold49G18261' => 'sas', 'SGA_v2.0_scaffold7G03831' => 'sas', 'SGA_v2.0_scaffold93G28359' => 'sas', 'SHI02210' => 'shi', 'SHI06028' => 'shi', 'SHI06321' => 'shi', 'SMO111G0012' => 'smo', 'SMO228G0080' => 'smo', 'SMO356G0756' => 'smo', 'Solyc02g080620.3' => 'sly', 'Solyc06g074530.1' => 'sly', 'Solyc11g066890.1' => 'sly', 'Solyc11g072520.3' => 'sly', 'Sopen02g025330' => 'spe', 'Sopen06g031000' => 'spe', 'Sopen09g008240' => 'spe', 'Sopen09g025210' => 'spe', 'Sopen11g026600' => 'spe', 'Sopen11g030170' => 'spe', 'Sp1g10420' => 'spa', 'Sp3g06570' => 'spa', 'Sp4g10660' => 'spa', 'Sp5g16460' => 'spa', 'Sp6g22710' => 'spa', 'TAR365G0112' => 'tar', 'TAR369G0717' => 'tar', 'TAR374G0976' => 'tar', 'TAR623G1128' => 'tar', 'TAR626G1937' => 'tar', 'TAR627G0123' => 'tar', 'TAR628G0305' => 'tar', 'TAR636G1176' => 'tar', 'TAR636G2442' => 'tar', 'THA.LOC104800556' => 'tha', 'THA.LOC104809501' => 'tha', 'THA.LOC104815126' => 'tha', 'THA.LOC104815732' => 'tha', 'THA.LOC104823528' => 'tha', 'Thecc.02G365600' => 'tca', 'Thecc.06G222300' => 'tca', 'Thecc.09G261800' => 'tca', 'Thecc.09G291400' => 'tca', 'Thhalv10003028m.g' => 'esa', 'Thhalv10007886m.g' => 'esa', 'Thhalv10016085m.g' => 'esa', 'Thhalv10016681m.g' => 'esa', 'Thhalv10020951m.g' => 'esa', 'TPR.G15598' => 'tpr', 'TPR.G29305' => 'tpr', 'TPR.G32395' => 'tpr', 'TPR.G36998' => 'tpr', 'TPR.G4227' => 'tpr', 'TWI18G1433' => 'twi', 'TWI31G0755' => 'twi', 'TWI38G0912' => 'twi', 'TWI75G1097' => 'twi', 'TWI75G1619' => 'twi', 'TWI79G1336' => 'twi', 'unitig_0.g943' => 'ugi', 'unitig_0.g944' => 'ugi', 'unitig_22.g6646' => 'ugi', 'unitig_37.g12681' => 'ugi', 'unitig_8.g3290' => 'ugi', 'vmacro03278' => 'vma', 'vmacro12197' => 'vma', 'vmacro14478' => 'vma', 'vmacro15787' => 'vma', 'vmacro15789' => 'vma', 'vmacro15790' => 'vma', 'vmacro15806' => 'vma', 'vmacro22907' => 'vma', 'vmacro22908' => 'vma', 'vmacro22909' => 'vma', 'vmacro23108' => 'vma', 'VMungo0540G0540' => 'vmu', 'VMungo0540G2468' => 'vmu', 'VMungo1080G0390' => 'vmu', 'VMungo1080G1165' => 'vmu', 'VMungo1127G0170' => 'vmu', 'VMungo1127G2099' => 'vmu', 'VMungo1215G3013' => 'vmu', 'Zm00001eb013110' => 'zma', 'Zm00001eb084260' => 'zma', 'Zm00001eb096110' => 'zma', 'Zm00001eb217510' => 'zma', 'Zm00001eb322550' => 'zma', 'Zm00001eb390770' => 'zma', 'Zm00001eb397170' => 'zma', 'Zm00001eb404610' => 'zma', 'Zm00001eb421790' => 'zma' ) $gf_id = 'HOM05D000911' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000911' ) $data_identifier = 'HOM05D000911' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 16, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 5, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 6, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 8, 'nnu' => (int) 16, 'oeu' => (int) 8, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 5, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 16, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421790' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000911', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27780' => 'bna', 'A03p35380' => 'bna', 'A04p21160' => 'bna', 'A05p40570' => 'bna', 'A06p26900' => 'bna', 'A08p33230' => 'bna', 'A09p65960' => 'bna', 'A10p18290' => 'bna', 'Aa31LG1G12990' => 'aar', 'Aa31LG1G2980' => 'aar', 'Aa31LG4G14320' => 'aar', 'Aa31LG7G11800' => 'aar', 'Aa31sc36G50' => 'aar', 'Aa31sc36G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3721' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5459' => 'aag', 'Actinidia03028' => 'ach', 'Actinidia03753' => 'ach', 'Actinidia04187' => 'ach', 'Actinidia05509' => 'ach', 'Actinidia24180' => 'ach', 'Actinidia26906' => 'ach', 'Actinidia37097' => 'ach', 'Actinidia38249' => 'ach', 'Ah.01g003470' => 'amhyb', 'Ah.01g004580' => 'amhyb', 'Ah.01g014850' => 'amhyb', 'Ah.01g016830' => 'amhyb', 'Ah.14g088000' => 'amhyb', 'AL1G22980' => 'aly', 'AL3G18990' => 'aly', 'AL4G22440' => 'aly', 'AL4G33180' => 'aly', 'AL5G22920' => 'aly', 'AL6G33660' => 'aly', 'AL8G20720' => 'aly', 'Aqoxy1G00935' => 'aox', 'Aqoxy1G02094' => 'aox', 'Aqoxy2G01239' => 'aox', 'Aqoxy4G01870' => 'aox', 'Aqoxy7G00450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.36ZVTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71EM27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5D6C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH3WRE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3NCM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RIM768' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YB5YRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z36GDV' => 'arhy', 'AT1G08250' => 'ath', 'AT1G11790' => 'ath', 'AT2G27820' => 'ath', 'AT3G07630' => 'ath', 'AT3G44720' => 'ath', 'AT5G22630' => 'ath', 'ATR0693G304' => 'atr', 'ATR0794G109' => 'atr', 'ATR0820G120' => 'atr', 'ATR1159G064' => 'atr', 'Atru.chr10.2239' => 'acertr', 'Atru.chr3.3371' => 'acertr', 'Atru.chr6.3202' => 'acertr', 'AUR62006499' => 'cqu', 'AUR62012718' => 'cqu', 'AUR62021938' => 'cqu', 'AUR62023932' => 'cqu', 'AUR62025034' => 'cqu', 'AUR62025035' => 'cqu', 'AUR62038307' => 'cqu', 'AUR62043466' => 'cqu', 'BcaB02g10748' => 'bca', 'BcaB03g13231' => 'bca', 'BcaB03g14689' => 'bca', 'BcaB05g22716' => 'bca', 'BcaB06g28172' => 'bca', 'BcaB08g36413' => 'bca', 'BcaC01g02186' => 'bca', 'BcaC01g04272' => 'bca', 'BcaC02g08080' => 'bca', 'BcaC02g08227' => 'bca', 'BcaC03g13901' => 'bca', 'BcaC04g19593' => 'bca', 'BcaC04g20874' => 'bca', 'BcaC05g29557' => 'bca', 'BcaC06g35505' => 'bca', 'BcaC07g41954' => 'bca', 'BcaC07g41955' => 'bca', 'BcaC07g41956' => 'bca', 'BcaC07g42519' => 'bca', 'BcaC07g42520' => 'bca', 'BcaC07g42523' => 'bca', 'BcaC07g42524' => 'bca', 'BcaC07g42525' => 'bca', 'BcaC08g47480' => 'bca', 'BcaC08g47481' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00530' => 'bna', 'BolC2t07178H' => 'bol', 'BolC3t16567H' => 'bol', 'BolC4t27234H' => 'bol', 'BolC5t29728H' => 'bol', 'BolC5t34622H' => 'bol', 'BolC6t40321H' => 'bol', 'BolC7t42028H' => 'bol', 'BolC8t49125H' => 'bol', 'BolC8t52538H' => 'bol', 'BolC8t52539H' => 'bol', 'BolC9t56681H' => 'bol', 'BolC9t58266H' => 'bol', 'BolSC21t60294H' => 'bol', 'BraA02t05670Z' => 'bra', 'BraA03t12716Z' => 'bra', 'BraA04t17685Z' => 'bra', 'BraA05t22788Z' => 'bra', 'BraA06t24032Z' => 'bra', 'BraA06t25625Z' => 'bra', 'BraA07t27930Z' => 'bra', 'BraA08t35242Z' => 'bra', 'BraA09t38609Z' => 'bra', 'BraA10t43905Z' => 'bra', 'C02p11060' => 'bna', 'C03p42990' => 'bna', 'C03p67310' => 'bna', 'C04p56990' => 'bna', 'C04p58660' => 'bna', 'C05p09890' => 'bna', 'C05p59680' => 'bna', 'C06p19830' => 'bna', 'C06p53040' => 'bna', 'C07p15230' => 'bna', 'C08p50070' => 'bna', 'C08p50090' => 'bna', 'C09p38330' => 'bna', 'C09p53940' => 'bna', 'CAN.G1014.1' => 'can', 'CAN.G644.30' => 'can', 'CAN.G84.47' => 'can', 'CAN.G919.8' => 'can', 'CANSAT54G0113' => 'cansat', 'CANSAT54G1286' => 'cansat', 'CANSAT64G1020' => 'cansat', 'CARHR008080' => 'chi', 'CARHR008090' => 'chi', 'CARHR012130' => 'chi', 'CARHR038390' => 'chi', 'CARHR082330' => 'chi', 'CARHR120520' => 'chi', 'CARHR151470' => 'chi', 'CARHR190950' => 'chi', 'Carub.0001s0760' => 'cru', 'Carub.0001s1146' => 'cru', 'Carub.0003s0721' => 'cru', 'Carub.0004s0858' => 'cru', 'Carub.0005s1040' => 'cru', 'Carub.0006s2035' => 'cru', 'Carub.0015s0005' => 'cru', 'Ca_01607_v3' => 'car', 'Ca_01677_v3' => 'car', 'Ca_06087_v3' => 'car', 'Ca_19238_v3' => 'car', 'Ca_19373_v3' => 'car', 'Ca_21079_v3' => 'car', 'CBR_g54016' => 'cbr', 'CBR_g54018' => 'cbr', 'CBR_g54020' => 'cbr', 'Cc01_g09780' => 'ccan', 'Cc01_g11680' => 'ccan', 'Cc02_g15610' => 'ccan', 'Cc05_g04350' => 'ccan', 'Cc09_g01580' => 'ccan', 'CDE01G0795' => 'cde', 'CDE02G2024' => 'cde', 'CDE02G2260' => 'cde', 'CDE02G4561' => 'cde', 'CDE05G2733' => 'cde', 'CDE05G3422' => 'cde', 'CDE06G2003' => 'cde', 'CDE08G0576' => 'cde', 'CDE09G0048' => 'cde', 'CDE11G0805' => 'cde', 'Cfa003644' => 'cfa', 'Cfa006290' => 'cfa', 'Cfa010080' => 'cfa', 'Cfa011376' => 'cfa', 'Cfa011576' => 'cfa', 'Cfa011577' => 'cfa', 'Cfa014389' => 'cfa', 'Ciclev10006044m.g' => 'ccl', 'Ciclev10006954m.g' => 'ccl', 'Ciclev10015131m.g' => 'ccl', 'Ciclev10015580m.g' => 'ccl', 'Ciclev10028359m.g' => 'ccl', 'Ciclev10028573m.g' => 'ccl', 'CiPaw.03G159300' => 'cil', 'CiPaw.04G115100' => 'cil', 'CiPaw.09G092800' => 'cil', 'CiPaw.10G071800' => 'cil', 'CiPaw.13G105800' => 'cil', 'CiPaw.13G141000' => 'cil', 'CiPaw.14G103400' => 'cil', 'ClCG01G012700' => 'cla', 'ClCG01G012720' => 'cla', 'ClCG01G021920' => 'cla', 'ClCG02G008870' => 'cla', 'ClCG02G020840' => 'cla', 'ClCG02G021930' => 'cla', 'COL.COLO4_19302' => 'col', 'COL.COLO4_25262' => 'col', 'COL.COLO4_31788' => 'col', 'Cpa.g.c34684' => 'cpa', 'Cpa.g.c36520.1' => 'cpa', 'Cpa.g.c45626' => 'cpa', 'Cpa.g.sc121.17' => 'cpa', 'Cpa.g.sc13.22' => 'cpa', 'Cpa.g.sc87.88' => 'cpa', 'Cre06.g261800' => 'cre', 'CsaV3_1G014500' => 'csa', 'CsaV3_1G014510' => 'csa', 'CsaV3_2G034880' => 'csa', 'CsaV3_6G014760' => 'csa', 'CsaV3_6G021500' => 'csa', 'CsaV3_6G048980' => 'csa', 'CSS0002511' => 'camsi', 'CSS0007556' => 'camsi', 'CSS0008532' => 'camsi', 'CSS0009709' => 'camsi', 'CSS0010486' => 'camsi', 'CSS0016768' => 'camsi', 'CSS0023512' => 'camsi', 'CSS0025341' => 'camsi', 'CSS0027999' => 'camsi', 'CSS0028944' => 'camsi', 'CSS0032292' => 'camsi', 'CSS0032464' => 'camsi', 'CSS0037153' => 'camsi', 'CSS0039256' => 'camsi', 'CSS0048392' => 'camsi', 'CSS0050458' => 'camsi', 'DCAR_004224' => 'dca', 'DCAR_006147' => 'dca', 'DCAR_006465' => 'dca', 'DCAR_008159' => 'dca', 'DCAR_012164' => 'dca', 'DCAR_019764' => 'dca', 'Dinv05418' => 'din', 'Dinv10839' => 'din', 'Dinv12521' => 'din', 'Dinv13900' => 'din', 'Dinv29426' => 'din', 'Duzib150G0263' => 'dzi', 'Duzib168G1178' => 'dzi', 'Duzib168G1924' => 'dzi', 'Duzib170G0299' => 'dzi', 'Duzib170G0813' => 'dzi', 'Duzib235G1128' => 'dzi', 'Duzib248G1060' => 'dzi', 'ECA232G1910' => 'eca', 'ECA233G4621' => 'eca', 'ECA238G1216' => 'eca', 'ECA238G1784' => 'eca', 'ECA248G1242' => 'eca', 'EL10Ac8g20071' => 'bvu', 'EL10Ac9g21086' => 'bvu', 'EL10Ac9g22407' => 'bvu', 'EL10Ac9g22412' => 'bvu', 'Eucgr.A01119' => 'egr', 'Eucgr.E04043' => 'egr', 'Eucgr.J00428' => 'egr', 'Eucgr.J00958' => 'egr', 'FAN11G3091' => 'fan', 'FAN11G3651' => 'fan', 'FAN16G2566' => 'fan', 'FAN21G3155' => 'fan', 'FAN21G3400' => 'fan', 'FAN21G3543' => 'fan', 'FAN25G0234' => 'fan', 'FAN25G1422' => 'fan', 'FAN25G3392' => 'fan', 'FvH4_3g01940' => 'fve', 'FvH4_3g29870' => 'fve', 'FvH4_3g33680' => 'fve', 'Glyma.09G004200' => 'gma', 'Glyma.11G151288' => 'gma', 'Glyma.11G189100' => 'gma', 'Glyma.12G072500' => 'gma', 'Glyma.12G085500' => 'gma', 'Glyma.12G181800' => 'gma', 'Glyma.12G193000' => 'gma', 'Glyma.13G309300' => 'gma', 'Glyma.13G319000' => 'gma', 'Glyma.17G012600' => 'gma', 'Gohir.A06G148600' => 'ghi', 'Gohir.A07G115800' => 'ghi', 'Gohir.A08G003600' => 'ghi', 'Gohir.A09G093300' => 'ghi', 'Gohir.A09G105400' => 'ghi', 'Gohir.A09G105500' => 'ghi', 'Gohir.D06G154600' => 'ghi', 'Gohir.D07G120200' => 'ghi', 'Gohir.D08G013900' => 'ghi', 'Gohir.D09G093100' => 'ghi', 'Gohir.D09G102200' => 'ghi', 'Gohir.D09G102300' => 'ghi', 'Gorai.001G129400' => 'gra', 'Gorai.004G008200' => 'gra', 'Gorai.006G109800' => 'gra', 'Gorai.006G119500' => 'gra', 'Gorai.006G121300' => 'gra', 'Gorai.010G180700' => 'gra', 'GSVIVG01012716001' => 'vvi', 'GSVIVG01025118001' => 'vvi', 'GSVIVG01030439001' => 'vvi', 'GSVIVG01031397001' => 'vvi', 'HanXRQChr01g0004201' => 'han', 'HanXRQChr02g0054941' => 'han', 'HanXRQChr05g0141811' => 'han', 'HanXRQChr07g0197751' => 'han', 'HanXRQChr11g0346691' => 'han', 'HanXRQChr13g0396971' => 'han', 'HanXRQChr14g0432951' => 'han', 'HanXRQChr14g0452001' => 'han', 'HanXRQChr15g0496681' => 'han', 'HanXRQChr17g0557491' => 'han', 'HanXRQChr17g0557501' => 'han', 'Haze_06809' => 'cav', 'Haze_12852' => 'cav', 'Haze_15850' => 'cav', 'Haze_23446' => 'cav', 'Haze_23942' => 'cav', 'Haze_23943' => 'cav', 'Hma1.2p1_0091F.1_g046450' => 'hma', 'Hma1.2p1_0128F.1_g059910' => 'hma', 'Hma1.2p1_0249F.1_g102260' => 'hma', 'Hma1.2p1_0453F.1_g156190' => 'hma', 'Hma1.2p1_0695F.1_g204380' => 'hma', 'Hma1.2p1_0749F.1_g212650' => 'hma', 'Hma1.2p1_2156F.1_g315420' => 'hma', 'Hma1.2p1_2686F.1_g326940' => 'hma', 'HPP92_006428' => 'vpl', 'HPP92_012069' => 'vpl', 'HPP92_014129' => 'vpl', 'HPP92_014133' => 'vpl', 'HPP92_017315' => 'vpl', 'HPP92_026445' => 'vpl', 'HPP92_026446' => 'vpl', 'Hund00774' => 'sun', 'Hund07682' => 'sun', 'Hund21413' => 'sun', 'Hund23462' => 'sun', 'Hund23463' => 'sun', 'Lalb_Chr03g0027911' => 'lal', 'Lalb_Chr13g0304271' => 'lal', 'Lalb_Chr19g0137471' => 'lal', 'Lalb_Chr22g0350651' => 'lal', 'Lalb_Chr24g0395151' => 'lal', 'Lj1A1231T40' => 'lonja', 'Lj1A221T48' => 'lonja', 'Lj1C924T12' => 'lonja', 'Lj2C993G6' => 'lonja', 'Lj3g0005790' => 'lja', 'Lj3g0015432' => 'lja', 'Lj3g0017722' => 'lja', 'Lj3g0018497' => 'lja', 'Lj4g0025071' => 'lja', 'Lsat_1_v5_gn_1_129680' => 'lsa', 'Lsat_1_v5_gn_2_25321' => 'lsa', 'Lsat_1_v5_gn_2_95461' => 'lsa', 'Lsat_1_v5_gn_4_159620' => 'lsa', 'Lsat_1_v5_gn_6_41301' => 'lsa', 'Lsat_1_v5_gn_6_74660' => 'lsa', 'Lsat_1_v5_gn_7_11520' => 'lsa', 'Lsat_1_v5_gn_9_67680' => 'lsa', 'Manes.04G008300' => 'mes', 'Manes.04G008400' => 'mes', 'Manes.04G026500' => 'mes', 'Manes.10G135300' => 'mes', 'Manes.11G157300' => 'mes', 'Manes.12G074000' => 'mes', 'Manes.16G006200' => 'mes', 'Manes.17G026400' => 'mes', 'Mapoly0024s0086' => 'mpo', 'Mapoly0024s0087' => 'mpo', 'Mapoly0071s0057' => 'mpo', 'Mapoly0204s0012' => 'mpo', 'MBI04_g37681_MAGBIO' => 'mbi', 'MBI05_g17779_MAGBIO' => 'mbi', 'MBI12_g31184_MAGBIO' => 'mbi', 'MBI17_g11083_MAGBIO' => 'mbi', 'MBI18_g03883_MAGBIO' => 'mbi', 'MBI18_g28940_MAGBIO' => 'mbi', 'MCO01G690' => 'mco', 'MD03G1109900' => 'mdo', 'MD03G1134800' => 'mdo', 'MD05G1348000' => 'mdo', 'MD10G1322400' => 'mdo', 'MD11G1123300' => 'mdo', 'MD11G1157600' => 'mdo', 'Medtr2g084875' => 'mtr', 'Medtr2g088130' => 'mtr', 'Medtr4g055310' => 'mtr', 'Medtr4g061070' => 'mtr', 'Medtr4g132250' => 'mtr', 'MELO3C004795.2' => 'cme', 'MELO3C004797.2' => 'cme', 'MELO3C007396.2' => 'cme', 'MELO3C019277.2' => 'cme', 'MELO3C021449.2' => 'cme', 'MELO3C025736.2' => 'cme', 'Migut.D02175' => 'egut', 'Migut.H01573' => 'egut', 'Migut.M01327' => 'egut', 'Migut.N02513' => 'egut', 'MSTRG.14638' => 'ama', 'MSTRG.18632' => 'ama', 'MSTRG.7203' => 'ama', 'Nitab4.5_0000533g0140' => 'nta', 'Nitab4.5_0000888g0150' => 'nta', 'Nitab4.5_0001453g0040' => 'nta', 'Nitab4.5_0002827g0090' => 'nta', 'Nitab4.5_0003082g0040' => 'nta', 'Nitab4.5_0007799g0040' => 'nta', 'Nitab4.5_0008983g0010' => 'nta', 'Nitab4.5_0009017g0020' => 'nta', 'Nn1g02132' => 'nnu', 'Nn1g03492' => 'nnu', 'Nn1g03493' => 'nnu', 'Nn1g03494' => 'nnu', 'Nn1g07164' => 'nnu', 'Nn1g07291' => 'nnu', 'Nn2g10655' => 'nnu', 'Nn2g11652' => 'nnu', 'Nn2g14008' => 'nnu', 'Nn3g17476' => 'nnu', 'Nn3g17477' => 'nnu', 'Nn4g22370' => 'nnu', 'Nn4g25255' => 'nnu', 'Nn5g27755' => 'nnu', 'Nn6g34260' => 'nnu', 'Nn6g35041' => 'nnu', 'Oeu005924.1' => 'oeu', 'Oeu008383.1' => 'oeu', 'Oeu014928.1' => 'oeu', 'Oeu019889.1' => 'oeu', 'Oeu022271.1' => 'oeu', 'Oeu025271.1' => 'oeu', 'Oeu036302.1' => 'oeu', 'Oeu044100.1' => 'oeu', 'Os01g0528300' => 'osa', 'Os03g0286200' => 'osa', 'Os04g0406600' => 'osa', 'Os07g0512000' => 'osa', 'Os07g0694600' => 'osa', 'Os08g0411000' => 'osa', 'Os09g0565700' => 'osa', 'Os09g0566050' => 'osa', 'Os10g0523700' => 'osa', 'Peaxi162Scf00002g00514' => 'pax', 'Peaxi162Scf00047g01817' => 'pax', 'Peaxi162Scf00114g00001' => 'pax', 'Peaxi162Scf00147g00613' => 'pax', 'Peaxi162Scf00389g00425' => 'pax', 'PGR042G1139' => 'pgr', 'PGR042G3273' => 'pgr', 'PGR102G2180' => 'pgr', 'PGR119G0234' => 'pgr', 'PGR119G0668' => 'pgr', 'PGSC0003DMG400007122' => 'stu', 'PGSC0003DMG400016478' => 'stu', 'PGSC0003DMG400025374' => 'stu', 'PGSC0003DMG400026536' => 'stu', 'Phvul.003G079600' => 'pvu', 'Phvul.005G115600' => 'pvu', 'Phvul.005G127100' => 'pvu', 'Phvul.006G149500' => 'pvu', 'Phvul.006G149600' => 'pvu', 'Phvul.011G071800' => 'pvu', 'Phvul.011G090400' => 'pvu', 'Potri.004G013400' => 'ptr', 'Potri.004G188100' => 'ptr', 'Potri.008G195500' => 'ptr', 'Potri.009G148800' => 'ptr', 'Potri.011G004700' => 'ptr', 'Pp3c17_22810' => 'ppa', 'Pp3c18_4480' => 'ppa', 'Pp3c19_13030' => 'ppa', 'Pp3c1_33620' => 'ppa', 'Pp3c2_9380' => 'ppa', 'PRCOL_00001023' => 'pco', 'Prupe.3G216300' => 'ppe', 'Prupe.4G019500' => 'ppe', 'Prupe.6G092500' => 'ppe', 'Prupe.6G119200' => 'ppe', 'Psat0s1945g0080' => 'psa', 'Psat0s4167g0040' => 'psa', 'Psat1g185800' => 'psa', 'Psat4g006440' => 'psa', 'Psat4g006480' => 'psa', 'Psat4g168120' => 'psa', 'Psat5g255680' => 'psa', 'Psat5g261760' => 'psa', 'Psat7g222120' => 'psa', 'PSO063G7252' => 'pso', 'PSO170G4778' => 'pso', 'PSO210G2249' => 'pso', 'PSO339G2411' => 'pso', 'PSO339G2457' => 'pso', 'PSO339G2854' => 'pso', 'PSO339G4288' => 'pso', 'PSO339G4615' => 'pso', 'PSO384G2796' => 'pso', 'PSO384G2940' => 'pso', 'PSO384G4227' => 'pso', 'PSO478G1425' => 'pso', 'PSO541G3863' => 'pso', 'PSO675G0507' => 'pso', 'PSO782G0338' => 'pso', 'PSO832G0644' => 'pso', 'QL01p013664' => 'qlo', 'QL01p036598' => 'qlo', 'QL05p072984' => 'qlo', 'QL08p005768' => 'qlo', 'QL08p032743' => 'qlo', 'QL93p0073_0439' => 'qlo', 'QL93p0073_0444' => 'qlo', 'RcHm_v2.0_Chr5g0002851' => 'rch', 'RcHm_v2.0_Chr5g0055201' => 'rch', 'RcHm_v2.0_Chr5g0061191' => 'rch', 'RcHm_v2.0_Chr7g0203231' => 'rch', 'Rhsim01G0208100' => 'rsi', 'Rhsim01G0208200' => 'rsi', 'Rhsim02G0106500' => 'rsi', 'Rhsim03G0107900' => 'rsi', 'Rhsim06G0163400' => 'rsi', 'Rhsim13G0105200' => 'rsi', 'Sabra04G0006300' => 'sbr', 'Sabra04G0127000' => 'sbr', 'Sabra08G0148700' => 'sbr', 'Sabra09G0117400' => 'sbr', 'SalBow1G3326' => 'sbo', 'SalBow3G3228' => 'sbo', 'SalBow6G1634' => 'sbo', 'SalBow6G3603' => 'sbo', 'SalBow6G5266' => 'sbo', 'SalBow7G2265' => 'sbo', 'SalBow8G0850' => 'sbo', 'SalBow8G2592' => 'sbo', 'Sc05g0009240' => 'sci', 'Sc12g0002300' => 'sci', 'Sc21g0000100' => 'sci', 'Sc21g0004720' => 'sci', 'Sed0002949' => 'sed', 'Sed0004114' => 'sed', 'Sed0004306' => 'sed', 'Sed0006172' => 'sed', 'Sed0008413' => 'sed', 'Sed0013809' => 'sed', 'Sed0019556' => 'sed', 'SEGI_03570' => 'sgi', 'SEGI_07859' => 'sgi', 'SEGI_15042' => 'sgi', 'SEGI_16263' => 'sgi', 'SEGI_16552' => 'sgi', 'SEGI_24331' => 'sgi', 'SEGI_27316' => 'sgi', 'SEGI_29521' => 'sgi', 'SEGI_41342' => 'sgi', 'SGA_v2.0_scaffold27G11617' => 'sas', 'SGA_v2.0_scaffold316G48428' => 'sas', 'SGA_v2.0_scaffold49G18261' => 'sas', 'SGA_v2.0_scaffold7G03831' => 'sas', 'SGA_v2.0_scaffold93G28359' => 'sas', 'SHI02210' => 'shi', 'SHI06028' => 'shi', 'SHI06321' => 'shi', 'SMO111G0012' => 'smo', 'SMO228G0080' => 'smo', 'SMO356G0756' => 'smo', 'Solyc02g080620.3' => 'sly', 'Solyc06g074530.1' => 'sly', 'Solyc11g066890.1' => 'sly', 'Solyc11g072520.3' => 'sly', 'Sopen02g025330' => 'spe', 'Sopen06g031000' => 'spe', 'Sopen09g008240' => 'spe', 'Sopen09g025210' => 'spe', 'Sopen11g026600' => 'spe', 'Sopen11g030170' => 'spe', 'Sp1g10420' => 'spa', 'Sp3g06570' => 'spa', 'Sp4g10660' => 'spa', 'Sp5g16460' => 'spa', 'Sp6g22710' => 'spa', 'TAR365G0112' => 'tar', 'TAR369G0717' => 'tar', 'TAR374G0976' => 'tar', 'TAR623G1128' => 'tar', 'TAR626G1937' => 'tar', 'TAR627G0123' => 'tar', 'TAR628G0305' => 'tar', 'TAR636G1176' => 'tar', 'TAR636G2442' => 'tar', 'THA.LOC104800556' => 'tha', 'THA.LOC104809501' => 'tha', 'THA.LOC104815126' => 'tha', 'THA.LOC104815732' => 'tha', 'THA.LOC104823528' => 'tha', 'Thecc.02G365600' => 'tca', 'Thecc.06G222300' => 'tca', 'Thecc.09G261800' => 'tca', 'Thecc.09G291400' => 'tca', 'Thhalv10003028m.g' => 'esa', 'Thhalv10007886m.g' => 'esa', 'Thhalv10016085m.g' => 'esa', 'Thhalv10016681m.g' => 'esa', 'Thhalv10020951m.g' => 'esa', 'TPR.G15598' => 'tpr', 'TPR.G29305' => 'tpr', 'TPR.G32395' => 'tpr', 'TPR.G36998' => 'tpr', 'TPR.G4227' => 'tpr', 'TWI18G1433' => 'twi', 'TWI31G0755' => 'twi', 'TWI38G0912' => 'twi', 'TWI75G1097' => 'twi', 'TWI75G1619' => 'twi', 'TWI79G1336' => 'twi', 'unitig_0.g943' => 'ugi', 'unitig_0.g944' => 'ugi', 'unitig_22.g6646' => 'ugi', 'unitig_37.g12681' => 'ugi', 'unitig_8.g3290' => 'ugi', 'vmacro03278' => 'vma', 'vmacro12197' => 'vma', 'vmacro14478' => 'vma', 'vmacro15787' => 'vma', 'vmacro15789' => 'vma', 'vmacro15790' => 'vma', 'vmacro15806' => 'vma', 'vmacro22907' => 'vma', 'vmacro22908' => 'vma', 'vmacro22909' => 'vma', 'vmacro23108' => 'vma', 'VMungo0540G0540' => 'vmu', 'VMungo0540G2468' => 'vmu', 'VMungo1080G0390' => 'vmu', 'VMungo1080G1165' => 'vmu', 'VMungo1127G0170' => 'vmu', 'VMungo1127G2099' => 'vmu', 'VMungo1215G3013' => 'vmu', 'Zm00001eb013110' => 'zma', 'Zm00001eb084260' => 'zma', 'Zm00001eb096110' => 'zma', 'Zm00001eb217510' => 'zma', 'Zm00001eb322550' => 'zma', 'Zm00001eb390770' => 'zma', 'Zm00001eb397170' => 'zma', 'Zm00001eb404610' => 'zma', 'Zm00001eb421790' => 'zma' ), 'gf_id' => 'HOM05D000911', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000911' ), 'data_identifier' => 'HOM05D000911', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000911', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27780' => 'bna', 'A03p35380' => 'bna', 'A04p21160' => 'bna', 'A05p40570' => 'bna', 'A06p26900' => 'bna', 'A08p33230' => 'bna', 'A09p65960' => 'bna', 'A10p18290' => 'bna', 'Aa31LG1G12990' => 'aar', 'Aa31LG1G2980' => 'aar', 'Aa31LG4G14320' => 'aar', 'Aa31LG7G11800' => 'aar', 'Aa31sc36G50' => 'aar', 'Aa31sc36G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3721' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5459' => 'aag', 'Actinidia03028' => 'ach', 'Actinidia03753' => 'ach', 'Actinidia04187' => 'ach', 'Actinidia05509' => 'ach', 'Actinidia24180' => 'ach', 'Actinidia26906' => 'ach', 'Actinidia37097' => 'ach', 'Actinidia38249' => 'ach', 'Ah.01g003470' => 'amhyb', 'Ah.01g004580' => 'amhyb', 'Ah.01g014850' => 'amhyb', 'Ah.01g016830' => 'amhyb', 'Ah.14g088000' => 'amhyb', 'AL1G22980' => 'aly', 'AL3G18990' => 'aly', 'AL4G22440' => 'aly', 'AL4G33180' => 'aly', 'AL5G22920' => 'aly', 'AL6G33660' => 'aly', 'AL8G20720' => 'aly', 'Aqoxy1G00935' => 'aox', 'Aqoxy1G02094' => 'aox', 'Aqoxy2G01239' => 'aox', 'Aqoxy4G01870' => 'aox', 'Aqoxy7G00450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.36ZVTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71EM27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5D6C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH3WRE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3NCM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RIM768' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YB5YRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z36GDV' => 'arhy', 'AT1G08250' => 'ath', 'AT1G11790' => 'ath', 'AT2G27820' => 'ath', 'AT3G07630' => 'ath', 'AT3G44720' => 'ath', 'AT5G22630' => 'ath', 'ATR0693G304' => 'atr', 'ATR0794G109' => 'atr', 'ATR0820G120' => 'atr', 'ATR1159G064' => 'atr', 'Atru.chr10.2239' => 'acertr', 'Atru.chr3.3371' => 'acertr', 'Atru.chr6.3202' => 'acertr', 'AUR62006499' => 'cqu', 'AUR62012718' => 'cqu', 'AUR62021938' => 'cqu', 'AUR62023932' => 'cqu', 'AUR62025034' => 'cqu', 'AUR62025035' => 'cqu', 'AUR62038307' => 'cqu', 'AUR62043466' => 'cqu', 'BcaB02g10748' => 'bca', 'BcaB03g13231' => 'bca', 'BcaB03g14689' => 'bca', 'BcaB05g22716' => 'bca', 'BcaB06g28172' => 'bca', 'BcaB08g36413' => 'bca', 'BcaC01g02186' => 'bca', 'BcaC01g04272' => 'bca', 'BcaC02g08080' => 'bca', 'BcaC02g08227' => 'bca', 'BcaC03g13901' => 'bca', 'BcaC04g19593' => 'bca', 'BcaC04g20874' => 'bca', 'BcaC05g29557' => 'bca', 'BcaC06g35505' => 'bca', 'BcaC07g41954' => 'bca', 'BcaC07g41955' => 'bca', 'BcaC07g41956' => 'bca', 'BcaC07g42519' => 'bca', 'BcaC07g42520' => 'bca', 'BcaC07g42523' => 'bca', 'BcaC07g42524' => 'bca', 'BcaC07g42525' => 'bca', 'BcaC08g47480' => 'bca', 'BcaC08g47481' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00530' => 'bna', 'BolC2t07178H' => 'bol', 'BolC3t16567H' => 'bol', 'BolC4t27234H' => 'bol', 'BolC5t29728H' => 'bol', 'BolC5t34622H' => 'bol', 'BolC6t40321H' => 'bol', 'BolC7t42028H' => 'bol', 'BolC8t49125H' => 'bol', 'BolC8t52538H' => 'bol', 'BolC8t52539H' => 'bol', 'BolC9t56681H' => 'bol', 'BolC9t58266H' => 'bol', 'BolSC21t60294H' => 'bol', 'BraA02t05670Z' => 'bra', 'BraA03t12716Z' => 'bra', 'BraA04t17685Z' => 'bra', 'BraA05t22788Z' => 'bra', 'BraA06t24032Z' => 'bra', 'BraA06t25625Z' => 'bra', 'BraA07t27930Z' => 'bra', 'BraA08t35242Z' => 'bra', 'BraA09t38609Z' => 'bra', 'BraA10t43905Z' => 'bra', 'C02p11060' => 'bna', 'C03p42990' => 'bna', 'C03p67310' => 'bna', 'C04p56990' => 'bna', 'C04p58660' => 'bna', 'C05p09890' => 'bna', 'C05p59680' => 'bna', 'C06p19830' => 'bna', 'C06p53040' => 'bna', 'C07p15230' => 'bna', 'C08p50070' => 'bna', 'C08p50090' => 'bna', 'C09p38330' => 'bna', 'C09p53940' => 'bna', 'CAN.G1014.1' => 'can', 'CAN.G644.30' => 'can', 'CAN.G84.47' => 'can', 'CAN.G919.8' => 'can', 'CANSAT54G0113' => 'cansat', 'CANSAT54G1286' => 'cansat', 'CANSAT64G1020' => 'cansat', 'CARHR008080' => 'chi', 'CARHR008090' => 'chi', 'CARHR012130' => 'chi', 'CARHR038390' => 'chi', 'CARHR082330' => 'chi', 'CARHR120520' => 'chi', 'CARHR151470' => 'chi', 'CARHR190950' => 'chi', 'Carub.0001s0760' => 'cru', 'Carub.0001s1146' => 'cru', 'Carub.0003s0721' => 'cru', 'Carub.0004s0858' => 'cru', 'Carub.0005s1040' => 'cru', 'Carub.0006s2035' => 'cru', 'Carub.0015s0005' => 'cru', 'Ca_01607_v3' => 'car', 'Ca_01677_v3' => 'car', 'Ca_06087_v3' => 'car', 'Ca_19238_v3' => 'car', 'Ca_19373_v3' => 'car', 'Ca_21079_v3' => 'car', 'CBR_g54016' => 'cbr', 'CBR_g54018' => 'cbr', 'CBR_g54020' => 'cbr', 'Cc01_g09780' => 'ccan', 'Cc01_g11680' => 'ccan', 'Cc02_g15610' => 'ccan', 'Cc05_g04350' => 'ccan', 'Cc09_g01580' => 'ccan', 'CDE01G0795' => 'cde', 'CDE02G2024' => 'cde', 'CDE02G2260' => 'cde', 'CDE02G4561' => 'cde', 'CDE05G2733' => 'cde', 'CDE05G3422' => 'cde', 'CDE06G2003' => 'cde', 'CDE08G0576' => 'cde', 'CDE09G0048' => 'cde', 'CDE11G0805' => 'cde', 'Cfa003644' => 'cfa', 'Cfa006290' => 'cfa', 'Cfa010080' => 'cfa', 'Cfa011376' => 'cfa', 'Cfa011576' => 'cfa', 'Cfa011577' => 'cfa', 'Cfa014389' => 'cfa', 'Ciclev10006044m.g' => 'ccl', 'Ciclev10006954m.g' => 'ccl', 'Ciclev10015131m.g' => 'ccl', 'Ciclev10015580m.g' => 'ccl', 'Ciclev10028359m.g' => 'ccl', 'Ciclev10028573m.g' => 'ccl', 'CiPaw.03G159300' => 'cil', 'CiPaw.04G115100' => 'cil', 'CiPaw.09G092800' => 'cil', 'CiPaw.10G071800' => 'cil', 'CiPaw.13G105800' => 'cil', 'CiPaw.13G141000' => 'cil', 'CiPaw.14G103400' => 'cil', 'ClCG01G012700' => 'cla', 'ClCG01G012720' => 'cla', 'ClCG01G021920' => 'cla', 'ClCG02G008870' => 'cla', 'ClCG02G020840' => 'cla', 'ClCG02G021930' => 'cla', 'COL.COLO4_19302' => 'col', 'COL.COLO4_25262' => 'col', 'COL.COLO4_31788' => 'col', 'Cpa.g.c34684' => 'cpa', 'Cpa.g.c36520.1' => 'cpa', 'Cpa.g.c45626' => 'cpa', 'Cpa.g.sc121.17' => 'cpa', 'Cpa.g.sc13.22' => 'cpa', 'Cpa.g.sc87.88' => 'cpa', 'Cre06.g261800' => 'cre', 'CsaV3_1G014500' => 'csa', 'CsaV3_1G014510' => 'csa', 'CsaV3_2G034880' => 'csa', 'CsaV3_6G014760' => 'csa', 'CsaV3_6G021500' => 'csa', 'CsaV3_6G048980' => 'csa', 'CSS0002511' => 'camsi', 'CSS0007556' => 'camsi', 'CSS0008532' => 'camsi', 'CSS0009709' => 'camsi', 'CSS0010486' => 'camsi', 'CSS0016768' => 'camsi', 'CSS0023512' => 'camsi', 'CSS0025341' => 'camsi', 'CSS0027999' => 'camsi', 'CSS0028944' => 'camsi', 'CSS0032292' => 'camsi', 'CSS0032464' => 'camsi', 'CSS0037153' => 'camsi', 'CSS0039256' => 'camsi', 'CSS0048392' => 'camsi', 'CSS0050458' => 'camsi', 'DCAR_004224' => 'dca', 'DCAR_006147' => 'dca', 'DCAR_006465' => 'dca', 'DCAR_008159' => 'dca', 'DCAR_012164' => 'dca', 'DCAR_019764' => 'dca', 'Dinv05418' => 'din', 'Dinv10839' => 'din', 'Dinv12521' => 'din', 'Dinv13900' => 'din', 'Dinv29426' => 'din', 'Duzib150G0263' => 'dzi', 'Duzib168G1178' => 'dzi', 'Duzib168G1924' => 'dzi', 'Duzib170G0299' => 'dzi', 'Duzib170G0813' => 'dzi', 'Duzib235G1128' => 'dzi', 'Duzib248G1060' => 'dzi', 'ECA232G1910' => 'eca', 'ECA233G4621' => 'eca', 'ECA238G1216' => 'eca', 'ECA238G1784' => 'eca', 'ECA248G1242' => 'eca', 'EL10Ac8g20071' => 'bvu', 'EL10Ac9g21086' => 'bvu', 'EL10Ac9g22407' => 'bvu', 'EL10Ac9g22412' => 'bvu', 'Eucgr.A01119' => 'egr', 'Eucgr.E04043' => 'egr', 'Eucgr.J00428' => 'egr', 'Eucgr.J00958' => 'egr', 'FAN11G3091' => 'fan', 'FAN11G3651' => 'fan', 'FAN16G2566' => 'fan', 'FAN21G3155' => 'fan', 'FAN21G3400' => 'fan', 'FAN21G3543' => 'fan', 'FAN25G0234' => 'fan', 'FAN25G1422' => 'fan', 'FAN25G3392' => 'fan', 'FvH4_3g01940' => 'fve', 'FvH4_3g29870' => 'fve', 'FvH4_3g33680' => 'fve', 'Glyma.09G004200' => 'gma', 'Glyma.11G151288' => 'gma', 'Glyma.11G189100' => 'gma', 'Glyma.12G072500' => 'gma', 'Glyma.12G085500' => 'gma', 'Glyma.12G181800' => 'gma', 'Glyma.12G193000' => 'gma', 'Glyma.13G309300' => 'gma', 'Glyma.13G319000' => 'gma', 'Glyma.17G012600' => 'gma', 'Gohir.A06G148600' => 'ghi', 'Gohir.A07G115800' => 'ghi', 'Gohir.A08G003600' => 'ghi', 'Gohir.A09G093300' => 'ghi', 'Gohir.A09G105400' => 'ghi', 'Gohir.A09G105500' => 'ghi', 'Gohir.D06G154600' => 'ghi', 'Gohir.D07G120200' => 'ghi', 'Gohir.D08G013900' => 'ghi', 'Gohir.D09G093100' => 'ghi', 'Gohir.D09G102200' => 'ghi', 'Gohir.D09G102300' => 'ghi', 'Gorai.001G129400' => 'gra', 'Gorai.004G008200' => 'gra', 'Gorai.006G109800' => 'gra', 'Gorai.006G119500' => 'gra', 'Gorai.006G121300' => 'gra', 'Gorai.010G180700' => 'gra', 'GSVIVG01012716001' => 'vvi', 'GSVIVG01025118001' => 'vvi', 'GSVIVG01030439001' => 'vvi', 'GSVIVG01031397001' => 'vvi', 'HanXRQChr01g0004201' => 'han', 'HanXRQChr02g0054941' => 'han', 'HanXRQChr05g0141811' => 'han', 'HanXRQChr07g0197751' => 'han', 'HanXRQChr11g0346691' => 'han', 'HanXRQChr13g0396971' => 'han', 'HanXRQChr14g0432951' => 'han', 'HanXRQChr14g0452001' => 'han', 'HanXRQChr15g0496681' => 'han', 'HanXRQChr17g0557491' => 'han', 'HanXRQChr17g0557501' => 'han', 'Haze_06809' => 'cav', 'Haze_12852' => 'cav', 'Haze_15850' => 'cav', 'Haze_23446' => 'cav', 'Haze_23942' => 'cav', 'Haze_23943' => 'cav', 'Hma1.2p1_0091F.1_g046450' => 'hma', 'Hma1.2p1_0128F.1_g059910' => 'hma', 'Hma1.2p1_0249F.1_g102260' => 'hma', 'Hma1.2p1_0453F.1_g156190' => 'hma', 'Hma1.2p1_0695F.1_g204380' => 'hma', 'Hma1.2p1_0749F.1_g212650' => 'hma', 'Hma1.2p1_2156F.1_g315420' => 'hma', 'Hma1.2p1_2686F.1_g326940' => 'hma', 'HPP92_006428' => 'vpl', 'HPP92_012069' => 'vpl', 'HPP92_014129' => 'vpl', 'HPP92_014133' => 'vpl', 'HPP92_017315' => 'vpl', 'HPP92_026445' => 'vpl', 'HPP92_026446' => 'vpl', 'Hund00774' => 'sun', 'Hund07682' => 'sun', 'Hund21413' => 'sun', 'Hund23462' => 'sun', 'Hund23463' => 'sun', 'Lalb_Chr03g0027911' => 'lal', 'Lalb_Chr13g0304271' => 'lal', 'Lalb_Chr19g0137471' => 'lal', 'Lalb_Chr22g0350651' => 'lal', 'Lalb_Chr24g0395151' => 'lal', 'Lj1A1231T40' => 'lonja', 'Lj1A221T48' => 'lonja', 'Lj1C924T12' => 'lonja', 'Lj2C993G6' => 'lonja', 'Lj3g0005790' => 'lja', 'Lj3g0015432' => 'lja', 'Lj3g0017722' => 'lja', 'Lj3g0018497' => 'lja', 'Lj4g0025071' => 'lja', 'Lsat_1_v5_gn_1_129680' => 'lsa', 'Lsat_1_v5_gn_2_25321' => 'lsa', 'Lsat_1_v5_gn_2_95461' => 'lsa', 'Lsat_1_v5_gn_4_159620' => 'lsa', 'Lsat_1_v5_gn_6_41301' => 'lsa', 'Lsat_1_v5_gn_6_74660' => 'lsa', 'Lsat_1_v5_gn_7_11520' => 'lsa', 'Lsat_1_v5_gn_9_67680' => 'lsa', 'Manes.04G008300' => 'mes', 'Manes.04G008400' => 'mes', 'Manes.04G026500' => 'mes', 'Manes.10G135300' => 'mes', 'Manes.11G157300' => 'mes', 'Manes.12G074000' => 'mes', 'Manes.16G006200' => 'mes', 'Manes.17G026400' => 'mes', 'Mapoly0024s0086' => 'mpo', 'Mapoly0024s0087' => 'mpo', 'Mapoly0071s0057' => 'mpo', 'Mapoly0204s0012' => 'mpo', 'MBI04_g37681_MAGBIO' => 'mbi', 'MBI05_g17779_MAGBIO' => 'mbi', 'MBI12_g31184_MAGBIO' => 'mbi', 'MBI17_g11083_MAGBIO' => 'mbi', 'MBI18_g03883_MAGBIO' => 'mbi', 'MBI18_g28940_MAGBIO' => 'mbi', 'MCO01G690' => 'mco', 'MD03G1109900' => 'mdo', 'MD03G1134800' => 'mdo', 'MD05G1348000' => 'mdo', 'MD10G1322400' => 'mdo', 'MD11G1123300' => 'mdo', 'MD11G1157600' => 'mdo', 'Medtr2g084875' => 'mtr', 'Medtr2g088130' => 'mtr', 'Medtr4g055310' => 'mtr', 'Medtr4g061070' => 'mtr', 'Medtr4g132250' => 'mtr', 'MELO3C004795.2' => 'cme', 'MELO3C004797.2' => 'cme', 'MELO3C007396.2' => 'cme', 'MELO3C019277.2' => 'cme', 'MELO3C021449.2' => 'cme', 'MELO3C025736.2' => 'cme', 'Migut.D02175' => 'egut', 'Migut.H01573' => 'egut', 'Migut.M01327' => 'egut', 'Migut.N02513' => 'egut', 'MSTRG.14638' => 'ama', 'MSTRG.18632' => 'ama', 'MSTRG.7203' => 'ama', 'Nitab4.5_0000533g0140' => 'nta', 'Nitab4.5_0000888g0150' => 'nta', 'Nitab4.5_0001453g0040' => 'nta', 'Nitab4.5_0002827g0090' => 'nta', 'Nitab4.5_0003082g0040' => 'nta', 'Nitab4.5_0007799g0040' => 'nta', 'Nitab4.5_0008983g0010' => 'nta', 'Nitab4.5_0009017g0020' => 'nta', 'Nn1g02132' => 'nnu', 'Nn1g03492' => 'nnu', 'Nn1g03493' => 'nnu', 'Nn1g03494' => 'nnu', 'Nn1g07164' => 'nnu', 'Nn1g07291' => 'nnu', 'Nn2g10655' => 'nnu', 'Nn2g11652' => 'nnu', 'Nn2g14008' => 'nnu', 'Nn3g17476' => 'nnu', 'Nn3g17477' => 'nnu', 'Nn4g22370' => 'nnu', 'Nn4g25255' => 'nnu', 'Nn5g27755' => 'nnu', 'Nn6g34260' => 'nnu', 'Nn6g35041' => 'nnu', 'Oeu005924.1' => 'oeu', 'Oeu008383.1' => 'oeu', 'Oeu014928.1' => 'oeu', 'Oeu019889.1' => 'oeu', 'Oeu022271.1' => 'oeu', 'Oeu025271.1' => 'oeu', 'Oeu036302.1' => 'oeu', 'Oeu044100.1' => 'oeu', 'Os01g0528300' => 'osa', 'Os03g0286200' => 'osa', 'Os04g0406600' => 'osa', 'Os07g0512000' => 'osa', 'Os07g0694600' => 'osa', 'Os08g0411000' => 'osa', 'Os09g0565700' => 'osa', 'Os09g0566050' => 'osa', 'Os10g0523700' => 'osa', 'Peaxi162Scf00002g00514' => 'pax', 'Peaxi162Scf00047g01817' => 'pax', 'Peaxi162Scf00114g00001' => 'pax', 'Peaxi162Scf00147g00613' => 'pax', 'Peaxi162Scf00389g00425' => 'pax', 'PGR042G1139' => 'pgr', 'PGR042G3273' => 'pgr', 'PGR102G2180' => 'pgr', 'PGR119G0234' => 'pgr', 'PGR119G0668' => 'pgr', 'PGSC0003DMG400007122' => 'stu', 'PGSC0003DMG400016478' => 'stu', 'PGSC0003DMG400025374' => 'stu', 'PGSC0003DMG400026536' => 'stu', 'Phvul.003G079600' => 'pvu', 'Phvul.005G115600' => 'pvu', 'Phvul.005G127100' => 'pvu', 'Phvul.006G149500' => 'pvu', 'Phvul.006G149600' => 'pvu', 'Phvul.011G071800' => 'pvu', 'Phvul.011G090400' => 'pvu', 'Potri.004G013400' => 'ptr', 'Potri.004G188100' => 'ptr', 'Potri.008G195500' => 'ptr', 'Potri.009G148800' => 'ptr', 'Potri.011G004700' => 'ptr', 'Pp3c17_22810' => 'ppa', 'Pp3c18_4480' => 'ppa', 'Pp3c19_13030' => 'ppa', 'Pp3c1_33620' => 'ppa', 'Pp3c2_9380' => 'ppa', 'PRCOL_00001023' => 'pco', 'Prupe.3G216300' => 'ppe', 'Prupe.4G019500' => 'ppe', 'Prupe.6G092500' => 'ppe', 'Prupe.6G119200' => 'ppe', 'Psat0s1945g0080' => 'psa', 'Psat0s4167g0040' => 'psa', 'Psat1g185800' => 'psa', 'Psat4g006440' => 'psa', 'Psat4g006480' => 'psa', 'Psat4g168120' => 'psa', 'Psat5g255680' => 'psa', 'Psat5g261760' => 'psa', 'Psat7g222120' => 'psa', 'PSO063G7252' => 'pso', 'PSO170G4778' => 'pso', 'PSO210G2249' => 'pso', 'PSO339G2411' => 'pso', 'PSO339G2457' => 'pso', 'PSO339G2854' => 'pso', 'PSO339G4288' => 'pso', 'PSO339G4615' => 'pso', 'PSO384G2796' => 'pso', 'PSO384G2940' => 'pso', 'PSO384G4227' => 'pso', 'PSO478G1425' => 'pso', 'PSO541G3863' => 'pso', 'PSO675G0507' => 'pso', 'PSO782G0338' => 'pso', 'PSO832G0644' => 'pso', 'QL01p013664' => 'qlo', 'QL01p036598' => 'qlo', 'QL05p072984' => 'qlo', 'QL08p005768' => 'qlo', 'QL08p032743' => 'qlo', 'QL93p0073_0439' => 'qlo', 'QL93p0073_0444' => 'qlo', 'RcHm_v2.0_Chr5g0002851' => 'rch', 'RcHm_v2.0_Chr5g0055201' => 'rch', 'RcHm_v2.0_Chr5g0061191' => 'rch', 'RcHm_v2.0_Chr7g0203231' => 'rch', 'Rhsim01G0208100' => 'rsi', 'Rhsim01G0208200' => 'rsi', 'Rhsim02G0106500' => 'rsi', 'Rhsim03G0107900' => 'rsi', 'Rhsim06G0163400' => 'rsi', 'Rhsim13G0105200' => 'rsi', 'Sabra04G0006300' => 'sbr', 'Sabra04G0127000' => 'sbr', 'Sabra08G0148700' => 'sbr', 'Sabra09G0117400' => 'sbr', 'SalBow1G3326' => 'sbo', 'SalBow3G3228' => 'sbo', 'SalBow6G1634' => 'sbo', 'SalBow6G3603' => 'sbo', 'SalBow6G5266' => 'sbo', 'SalBow7G2265' => 'sbo', 'SalBow8G0850' => 'sbo', 'SalBow8G2592' => 'sbo', 'Sc05g0009240' => 'sci', 'Sc12g0002300' => 'sci', 'Sc21g0000100' => 'sci', 'Sc21g0004720' => 'sci', 'Sed0002949' => 'sed', 'Sed0004114' => 'sed', 'Sed0004306' => 'sed', 'Sed0006172' => 'sed', 'Sed0008413' => 'sed', 'Sed0013809' => 'sed', 'Sed0019556' => 'sed', 'SEGI_03570' => 'sgi', 'SEGI_07859' => 'sgi', 'SEGI_15042' => 'sgi', 'SEGI_16263' => 'sgi', 'SEGI_16552' => 'sgi', 'SEGI_24331' => 'sgi', 'SEGI_27316' => 'sgi', 'SEGI_29521' => 'sgi', 'SEGI_41342' => 'sgi', 'SGA_v2.0_scaffold27G11617' => 'sas', 'SGA_v2.0_scaffold316G48428' => 'sas', 'SGA_v2.0_scaffold49G18261' => 'sas', 'SGA_v2.0_scaffold7G03831' => 'sas', 'SGA_v2.0_scaffold93G28359' => 'sas', 'SHI02210' => 'shi', 'SHI06028' => 'shi', 'SHI06321' => 'shi', 'SMO111G0012' => 'smo', 'SMO228G0080' => 'smo', 'SMO356G0756' => 'smo', 'Solyc02g080620.3' => 'sly', 'Solyc06g074530.1' => 'sly', 'Solyc11g066890.1' => 'sly', 'Solyc11g072520.3' => 'sly', 'Sopen02g025330' => 'spe', 'Sopen06g031000' => 'spe', 'Sopen09g008240' => 'spe', 'Sopen09g025210' => 'spe', 'Sopen11g026600' => 'spe', 'Sopen11g030170' => 'spe', 'Sp1g10420' => 'spa', 'Sp3g06570' => 'spa', 'Sp4g10660' => 'spa', 'Sp5g16460' => 'spa', 'Sp6g22710' => 'spa', 'TAR365G0112' => 'tar', 'TAR369G0717' => 'tar', 'TAR374G0976' => 'tar', 'TAR623G1128' => 'tar', 'TAR626G1937' => 'tar', 'TAR627G0123' => 'tar', 'TAR628G0305' => 'tar', 'TAR636G1176' => 'tar', 'TAR636G2442' => 'tar', 'THA.LOC104800556' => 'tha', 'THA.LOC104809501' => 'tha', 'THA.LOC104815126' => 'tha', 'THA.LOC104815732' => 'tha', 'THA.LOC104823528' => 'tha', 'Thecc.02G365600' => 'tca', 'Thecc.06G222300' => 'tca', 'Thecc.09G261800' => 'tca', 'Thecc.09G291400' => 'tca', 'Thhalv10003028m.g' => 'esa', 'Thhalv10007886m.g' => 'esa', 'Thhalv10016085m.g' => 'esa', 'Thhalv10016681m.g' => 'esa', 'Thhalv10020951m.g' => 'esa', 'TPR.G15598' => 'tpr', 'TPR.G29305' => 'tpr', 'TPR.G32395' => 'tpr', 'TPR.G36998' => 'tpr', 'TPR.G4227' => 'tpr', 'TWI18G1433' => 'twi', 'TWI31G0755' => 'twi', 'TWI38G0912' => 'twi', 'TWI75G1097' => 'twi', 'TWI75G1619' => 'twi', 'TWI79G1336' => 'twi', 'unitig_0.g943' => 'ugi', 'unitig_0.g944' => 'ugi', 'unitig_22.g6646' => 'ugi', 'unitig_37.g12681' => 'ugi', 'unitig_8.g3290' => 'ugi', 'vmacro03278' => 'vma', 'vmacro12197' => 'vma', 'vmacro14478' => 'vma', 'vmacro15787' => 'vma', 'vmacro15789' => 'vma', 'vmacro15790' => 'vma', 'vmacro15806' => 'vma', 'vmacro22907' => 'vma', 'vmacro22908' => 'vma', 'vmacro22909' => 'vma', 'vmacro23108' => 'vma', 'VMungo0540G0540' => 'vmu', 'VMungo0540G2468' => 'vmu', 'VMungo1080G0390' => 'vmu', 'VMungo1080G1165' => 'vmu', 'VMungo1127G0170' => 'vmu', 'VMungo1127G2099' => 'vmu', 'VMungo1215G3013' => 'vmu', 'Zm00001eb013110' => 'zma', 'Zm00001eb084260' => 'zma', 'Zm00001eb096110' => 'zma', 'Zm00001eb217510' => 'zma', 'Zm00001eb322550' => 'zma', 'Zm00001eb390770' => 'zma', 'Zm00001eb397170' => 'zma', 'Zm00001eb404610' => 'zma', 'Zm00001eb421790' => 'zma' ) $gf_id = 'HOM05D000911' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000911' ) $data_identifier = 'HOM05D000911' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 16, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 5, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 6, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 8, 'nnu' => (int) 16, 'oeu' => (int) 8, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 5, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 16, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421790' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000911', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27780' => 'bna', 'A03p35380' => 'bna', 'A04p21160' => 'bna', 'A05p40570' => 'bna', 'A06p26900' => 'bna', 'A08p33230' => 'bna', 'A09p65960' => 'bna', 'A10p18290' => 'bna', 'Aa31LG1G12990' => 'aar', 'Aa31LG1G2980' => 'aar', 'Aa31LG4G14320' => 'aar', 'Aa31LG7G11800' => 'aar', 'Aa31sc36G50' => 'aar', 'Aa31sc36G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3721' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5459' => 'aag', 'Actinidia03028' => 'ach', 'Actinidia03753' => 'ach', 'Actinidia04187' => 'ach', 'Actinidia05509' => 'ach', 'Actinidia24180' => 'ach', 'Actinidia26906' => 'ach', 'Actinidia37097' => 'ach', 'Actinidia38249' => 'ach', 'Ah.01g003470' => 'amhyb', 'Ah.01g004580' => 'amhyb', 'Ah.01g014850' => 'amhyb', 'Ah.01g016830' => 'amhyb', 'Ah.14g088000' => 'amhyb', 'AL1G22980' => 'aly', 'AL3G18990' => 'aly', 'AL4G22440' => 'aly', 'AL4G33180' => 'aly', 'AL5G22920' => 'aly', 'AL6G33660' => 'aly', 'AL8G20720' => 'aly', 'Aqoxy1G00935' => 'aox', 'Aqoxy1G02094' => 'aox', 'Aqoxy2G01239' => 'aox', 'Aqoxy4G01870' => 'aox', 'Aqoxy7G00450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.36ZVTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71EM27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5D6C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH3WRE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3NCM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RIM768' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YB5YRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z36GDV' => 'arhy', 'AT1G08250' => 'ath', 'AT1G11790' => 'ath', 'AT2G27820' => 'ath', 'AT3G07630' => 'ath', 'AT3G44720' => 'ath', 'AT5G22630' => 'ath', 'ATR0693G304' => 'atr', 'ATR0794G109' => 'atr', 'ATR0820G120' => 'atr', 'ATR1159G064' => 'atr', 'Atru.chr10.2239' => 'acertr', 'Atru.chr3.3371' => 'acertr', 'Atru.chr6.3202' => 'acertr', 'AUR62006499' => 'cqu', 'AUR62012718' => 'cqu', 'AUR62021938' => 'cqu', 'AUR62023932' => 'cqu', 'AUR62025034' => 'cqu', 'AUR62025035' => 'cqu', 'AUR62038307' => 'cqu', 'AUR62043466' => 'cqu', 'BcaB02g10748' => 'bca', 'BcaB03g13231' => 'bca', 'BcaB03g14689' => 'bca', 'BcaB05g22716' => 'bca', 'BcaB06g28172' => 'bca', 'BcaB08g36413' => 'bca', 'BcaC01g02186' => 'bca', 'BcaC01g04272' => 'bca', 'BcaC02g08080' => 'bca', 'BcaC02g08227' => 'bca', 'BcaC03g13901' => 'bca', 'BcaC04g19593' => 'bca', 'BcaC04g20874' => 'bca', 'BcaC05g29557' => 'bca', 'BcaC06g35505' => 'bca', 'BcaC07g41954' => 'bca', 'BcaC07g41955' => 'bca', 'BcaC07g41956' => 'bca', 'BcaC07g42519' => 'bca', 'BcaC07g42520' => 'bca', 'BcaC07g42523' => 'bca', 'BcaC07g42524' => 'bca', 'BcaC07g42525' => 'bca', 'BcaC08g47480' => 'bca', 'BcaC08g47481' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00530' => 'bna', 'BolC2t07178H' => 'bol', 'BolC3t16567H' => 'bol', 'BolC4t27234H' => 'bol', 'BolC5t29728H' => 'bol', 'BolC5t34622H' => 'bol', 'BolC6t40321H' => 'bol', 'BolC7t42028H' => 'bol', 'BolC8t49125H' => 'bol', 'BolC8t52538H' => 'bol', 'BolC8t52539H' => 'bol', 'BolC9t56681H' => 'bol', 'BolC9t58266H' => 'bol', 'BolSC21t60294H' => 'bol', 'BraA02t05670Z' => 'bra', 'BraA03t12716Z' => 'bra', 'BraA04t17685Z' => 'bra', 'BraA05t22788Z' => 'bra', 'BraA06t24032Z' => 'bra', 'BraA06t25625Z' => 'bra', 'BraA07t27930Z' => 'bra', 'BraA08t35242Z' => 'bra', 'BraA09t38609Z' => 'bra', 'BraA10t43905Z' => 'bra', 'C02p11060' => 'bna', 'C03p42990' => 'bna', 'C03p67310' => 'bna', 'C04p56990' => 'bna', 'C04p58660' => 'bna', 'C05p09890' => 'bna', 'C05p59680' => 'bna', 'C06p19830' => 'bna', 'C06p53040' => 'bna', 'C07p15230' => 'bna', 'C08p50070' => 'bna', 'C08p50090' => 'bna', 'C09p38330' => 'bna', 'C09p53940' => 'bna', 'CAN.G1014.1' => 'can', 'CAN.G644.30' => 'can', 'CAN.G84.47' => 'can', 'CAN.G919.8' => 'can', 'CANSAT54G0113' => 'cansat', 'CANSAT54G1286' => 'cansat', 'CANSAT64G1020' => 'cansat', 'CARHR008080' => 'chi', 'CARHR008090' => 'chi', 'CARHR012130' => 'chi', 'CARHR038390' => 'chi', 'CARHR082330' => 'chi', 'CARHR120520' => 'chi', 'CARHR151470' => 'chi', 'CARHR190950' => 'chi', 'Carub.0001s0760' => 'cru', 'Carub.0001s1146' => 'cru', 'Carub.0003s0721' => 'cru', 'Carub.0004s0858' => 'cru', 'Carub.0005s1040' => 'cru', 'Carub.0006s2035' => 'cru', 'Carub.0015s0005' => 'cru', 'Ca_01607_v3' => 'car', 'Ca_01677_v3' => 'car', 'Ca_06087_v3' => 'car', 'Ca_19238_v3' => 'car', 'Ca_19373_v3' => 'car', 'Ca_21079_v3' => 'car', 'CBR_g54016' => 'cbr', 'CBR_g54018' => 'cbr', 'CBR_g54020' => 'cbr', 'Cc01_g09780' => 'ccan', 'Cc01_g11680' => 'ccan', 'Cc02_g15610' => 'ccan', 'Cc05_g04350' => 'ccan', 'Cc09_g01580' => 'ccan', 'CDE01G0795' => 'cde', 'CDE02G2024' => 'cde', 'CDE02G2260' => 'cde', 'CDE02G4561' => 'cde', 'CDE05G2733' => 'cde', 'CDE05G3422' => 'cde', 'CDE06G2003' => 'cde', 'CDE08G0576' => 'cde', 'CDE09G0048' => 'cde', 'CDE11G0805' => 'cde', 'Cfa003644' => 'cfa', 'Cfa006290' => 'cfa', 'Cfa010080' => 'cfa', 'Cfa011376' => 'cfa', 'Cfa011576' => 'cfa', 'Cfa011577' => 'cfa', 'Cfa014389' => 'cfa', 'Ciclev10006044m.g' => 'ccl', 'Ciclev10006954m.g' => 'ccl', 'Ciclev10015131m.g' => 'ccl', 'Ciclev10015580m.g' => 'ccl', 'Ciclev10028359m.g' => 'ccl', 'Ciclev10028573m.g' => 'ccl', 'CiPaw.03G159300' => 'cil', 'CiPaw.04G115100' => 'cil', 'CiPaw.09G092800' => 'cil', 'CiPaw.10G071800' => 'cil', 'CiPaw.13G105800' => 'cil', 'CiPaw.13G141000' => 'cil', 'CiPaw.14G103400' => 'cil', 'ClCG01G012700' => 'cla', 'ClCG01G012720' => 'cla', 'ClCG01G021920' => 'cla', 'ClCG02G008870' => 'cla', 'ClCG02G020840' => 'cla', 'ClCG02G021930' => 'cla', 'COL.COLO4_19302' => 'col', 'COL.COLO4_25262' => 'col', 'COL.COLO4_31788' => 'col', 'Cpa.g.c34684' => 'cpa', 'Cpa.g.c36520.1' => 'cpa', 'Cpa.g.c45626' => 'cpa', 'Cpa.g.sc121.17' => 'cpa', 'Cpa.g.sc13.22' => 'cpa', 'Cpa.g.sc87.88' => 'cpa', 'Cre06.g261800' => 'cre', 'CsaV3_1G014500' => 'csa', 'CsaV3_1G014510' => 'csa', 'CsaV3_2G034880' => 'csa', 'CsaV3_6G014760' => 'csa', 'CsaV3_6G021500' => 'csa', 'CsaV3_6G048980' => 'csa', 'CSS0002511' => 'camsi', 'CSS0007556' => 'camsi', 'CSS0008532' => 'camsi', 'CSS0009709' => 'camsi', 'CSS0010486' => 'camsi', 'CSS0016768' => 'camsi', 'CSS0023512' => 'camsi', 'CSS0025341' => 'camsi', 'CSS0027999' => 'camsi', 'CSS0028944' => 'camsi', 'CSS0032292' => 'camsi', 'CSS0032464' => 'camsi', 'CSS0037153' => 'camsi', 'CSS0039256' => 'camsi', 'CSS0048392' => 'camsi', 'CSS0050458' => 'camsi', 'DCAR_004224' => 'dca', 'DCAR_006147' => 'dca', 'DCAR_006465' => 'dca', 'DCAR_008159' => 'dca', 'DCAR_012164' => 'dca', 'DCAR_019764' => 'dca', 'Dinv05418' => 'din', 'Dinv10839' => 'din', 'Dinv12521' => 'din', 'Dinv13900' => 'din', 'Dinv29426' => 'din', 'Duzib150G0263' => 'dzi', 'Duzib168G1178' => 'dzi', 'Duzib168G1924' => 'dzi', 'Duzib170G0299' => 'dzi', 'Duzib170G0813' => 'dzi', 'Duzib235G1128' => 'dzi', 'Duzib248G1060' => 'dzi', 'ECA232G1910' => 'eca', 'ECA233G4621' => 'eca', 'ECA238G1216' => 'eca', 'ECA238G1784' => 'eca', 'ECA248G1242' => 'eca', 'EL10Ac8g20071' => 'bvu', 'EL10Ac9g21086' => 'bvu', 'EL10Ac9g22407' => 'bvu', 'EL10Ac9g22412' => 'bvu', 'Eucgr.A01119' => 'egr', 'Eucgr.E04043' => 'egr', 'Eucgr.J00428' => 'egr', 'Eucgr.J00958' => 'egr', 'FAN11G3091' => 'fan', 'FAN11G3651' => 'fan', 'FAN16G2566' => 'fan', 'FAN21G3155' => 'fan', 'FAN21G3400' => 'fan', 'FAN21G3543' => 'fan', 'FAN25G0234' => 'fan', 'FAN25G1422' => 'fan', 'FAN25G3392' => 'fan', 'FvH4_3g01940' => 'fve', 'FvH4_3g29870' => 'fve', 'FvH4_3g33680' => 'fve', 'Glyma.09G004200' => 'gma', 'Glyma.11G151288' => 'gma', 'Glyma.11G189100' => 'gma', 'Glyma.12G072500' => 'gma', 'Glyma.12G085500' => 'gma', 'Glyma.12G181800' => 'gma', 'Glyma.12G193000' => 'gma', 'Glyma.13G309300' => 'gma', 'Glyma.13G319000' => 'gma', 'Glyma.17G012600' => 'gma', 'Gohir.A06G148600' => 'ghi', 'Gohir.A07G115800' => 'ghi', 'Gohir.A08G003600' => 'ghi', 'Gohir.A09G093300' => 'ghi', 'Gohir.A09G105400' => 'ghi', 'Gohir.A09G105500' => 'ghi', 'Gohir.D06G154600' => 'ghi', 'Gohir.D07G120200' => 'ghi', 'Gohir.D08G013900' => 'ghi', 'Gohir.D09G093100' => 'ghi', 'Gohir.D09G102200' => 'ghi', 'Gohir.D09G102300' => 'ghi', 'Gorai.001G129400' => 'gra', 'Gorai.004G008200' => 'gra', 'Gorai.006G109800' => 'gra', 'Gorai.006G119500' => 'gra', 'Gorai.006G121300' => 'gra', 'Gorai.010G180700' => 'gra', 'GSVIVG01012716001' => 'vvi', 'GSVIVG01025118001' => 'vvi', 'GSVIVG01030439001' => 'vvi', 'GSVIVG01031397001' => 'vvi', 'HanXRQChr01g0004201' => 'han', 'HanXRQChr02g0054941' => 'han', 'HanXRQChr05g0141811' => 'han', 'HanXRQChr07g0197751' => 'han', 'HanXRQChr11g0346691' => 'han', 'HanXRQChr13g0396971' => 'han', 'HanXRQChr14g0432951' => 'han', 'HanXRQChr14g0452001' => 'han', 'HanXRQChr15g0496681' => 'han', 'HanXRQChr17g0557491' => 'han', 'HanXRQChr17g0557501' => 'han', 'Haze_06809' => 'cav', 'Haze_12852' => 'cav', 'Haze_15850' => 'cav', 'Haze_23446' => 'cav', 'Haze_23942' => 'cav', 'Haze_23943' => 'cav', 'Hma1.2p1_0091F.1_g046450' => 'hma', 'Hma1.2p1_0128F.1_g059910' => 'hma', 'Hma1.2p1_0249F.1_g102260' => 'hma', 'Hma1.2p1_0453F.1_g156190' => 'hma', 'Hma1.2p1_0695F.1_g204380' => 'hma', 'Hma1.2p1_0749F.1_g212650' => 'hma', 'Hma1.2p1_2156F.1_g315420' => 'hma', 'Hma1.2p1_2686F.1_g326940' => 'hma', 'HPP92_006428' => 'vpl', 'HPP92_012069' => 'vpl', 'HPP92_014129' => 'vpl', 'HPP92_014133' => 'vpl', 'HPP92_017315' => 'vpl', 'HPP92_026445' => 'vpl', 'HPP92_026446' => 'vpl', 'Hund00774' => 'sun', 'Hund07682' => 'sun', 'Hund21413' => 'sun', 'Hund23462' => 'sun', 'Hund23463' => 'sun', 'Lalb_Chr03g0027911' => 'lal', 'Lalb_Chr13g0304271' => 'lal', 'Lalb_Chr19g0137471' => 'lal', 'Lalb_Chr22g0350651' => 'lal', 'Lalb_Chr24g0395151' => 'lal', 'Lj1A1231T40' => 'lonja', 'Lj1A221T48' => 'lonja', 'Lj1C924T12' => 'lonja', 'Lj2C993G6' => 'lonja', 'Lj3g0005790' => 'lja', 'Lj3g0015432' => 'lja', 'Lj3g0017722' => 'lja', 'Lj3g0018497' => 'lja', 'Lj4g0025071' => 'lja', 'Lsat_1_v5_gn_1_129680' => 'lsa', 'Lsat_1_v5_gn_2_25321' => 'lsa', 'Lsat_1_v5_gn_2_95461' => 'lsa', 'Lsat_1_v5_gn_4_159620' => 'lsa', 'Lsat_1_v5_gn_6_41301' => 'lsa', 'Lsat_1_v5_gn_6_74660' => 'lsa', 'Lsat_1_v5_gn_7_11520' => 'lsa', 'Lsat_1_v5_gn_9_67680' => 'lsa', 'Manes.04G008300' => 'mes', 'Manes.04G008400' => 'mes', 'Manes.04G026500' => 'mes', 'Manes.10G135300' => 'mes', 'Manes.11G157300' => 'mes', 'Manes.12G074000' => 'mes', 'Manes.16G006200' => 'mes', 'Manes.17G026400' => 'mes', 'Mapoly0024s0086' => 'mpo', 'Mapoly0024s0087' => 'mpo', 'Mapoly0071s0057' => 'mpo', 'Mapoly0204s0012' => 'mpo', 'MBI04_g37681_MAGBIO' => 'mbi', 'MBI05_g17779_MAGBIO' => 'mbi', 'MBI12_g31184_MAGBIO' => 'mbi', 'MBI17_g11083_MAGBIO' => 'mbi', 'MBI18_g03883_MAGBIO' => 'mbi', 'MBI18_g28940_MAGBIO' => 'mbi', 'MCO01G690' => 'mco', 'MD03G1109900' => 'mdo', 'MD03G1134800' => 'mdo', 'MD05G1348000' => 'mdo', 'MD10G1322400' => 'mdo', 'MD11G1123300' => 'mdo', 'MD11G1157600' => 'mdo', 'Medtr2g084875' => 'mtr', 'Medtr2g088130' => 'mtr', 'Medtr4g055310' => 'mtr', 'Medtr4g061070' => 'mtr', 'Medtr4g132250' => 'mtr', 'MELO3C004795.2' => 'cme', 'MELO3C004797.2' => 'cme', 'MELO3C007396.2' => 'cme', 'MELO3C019277.2' => 'cme', 'MELO3C021449.2' => 'cme', 'MELO3C025736.2' => 'cme', 'Migut.D02175' => 'egut', 'Migut.H01573' => 'egut', 'Migut.M01327' => 'egut', 'Migut.N02513' => 'egut', 'MSTRG.14638' => 'ama', 'MSTRG.18632' => 'ama', 'MSTRG.7203' => 'ama', 'Nitab4.5_0000533g0140' => 'nta', 'Nitab4.5_0000888g0150' => 'nta', 'Nitab4.5_0001453g0040' => 'nta', 'Nitab4.5_0002827g0090' => 'nta', 'Nitab4.5_0003082g0040' => 'nta', 'Nitab4.5_0007799g0040' => 'nta', 'Nitab4.5_0008983g0010' => 'nta', 'Nitab4.5_0009017g0020' => 'nta', 'Nn1g02132' => 'nnu', 'Nn1g03492' => 'nnu', 'Nn1g03493' => 'nnu', 'Nn1g03494' => 'nnu', 'Nn1g07164' => 'nnu', 'Nn1g07291' => 'nnu', 'Nn2g10655' => 'nnu', 'Nn2g11652' => 'nnu', 'Nn2g14008' => 'nnu', 'Nn3g17476' => 'nnu', 'Nn3g17477' => 'nnu', 'Nn4g22370' => 'nnu', 'Nn4g25255' => 'nnu', 'Nn5g27755' => 'nnu', 'Nn6g34260' => 'nnu', 'Nn6g35041' => 'nnu', 'Oeu005924.1' => 'oeu', 'Oeu008383.1' => 'oeu', 'Oeu014928.1' => 'oeu', 'Oeu019889.1' => 'oeu', 'Oeu022271.1' => 'oeu', 'Oeu025271.1' => 'oeu', 'Oeu036302.1' => 'oeu', 'Oeu044100.1' => 'oeu', 'Os01g0528300' => 'osa', 'Os03g0286200' => 'osa', 'Os04g0406600' => 'osa', 'Os07g0512000' => 'osa', 'Os07g0694600' => 'osa', 'Os08g0411000' => 'osa', 'Os09g0565700' => 'osa', 'Os09g0566050' => 'osa', 'Os10g0523700' => 'osa', 'Peaxi162Scf00002g00514' => 'pax', 'Peaxi162Scf00047g01817' => 'pax', 'Peaxi162Scf00114g00001' => 'pax', 'Peaxi162Scf00147g00613' => 'pax', 'Peaxi162Scf00389g00425' => 'pax', 'PGR042G1139' => 'pgr', 'PGR042G3273' => 'pgr', 'PGR102G2180' => 'pgr', 'PGR119G0234' => 'pgr', 'PGR119G0668' => 'pgr', 'PGSC0003DMG400007122' => 'stu', 'PGSC0003DMG400016478' => 'stu', 'PGSC0003DMG400025374' => 'stu', 'PGSC0003DMG400026536' => 'stu', 'Phvul.003G079600' => 'pvu', 'Phvul.005G115600' => 'pvu', 'Phvul.005G127100' => 'pvu', 'Phvul.006G149500' => 'pvu', 'Phvul.006G149600' => 'pvu', 'Phvul.011G071800' => 'pvu', 'Phvul.011G090400' => 'pvu', 'Potri.004G013400' => 'ptr', 'Potri.004G188100' => 'ptr', 'Potri.008G195500' => 'ptr', 'Potri.009G148800' => 'ptr', 'Potri.011G004700' => 'ptr', 'Pp3c17_22810' => 'ppa', 'Pp3c18_4480' => 'ppa', 'Pp3c19_13030' => 'ppa', 'Pp3c1_33620' => 'ppa', 'Pp3c2_9380' => 'ppa', 'PRCOL_00001023' => 'pco', 'Prupe.3G216300' => 'ppe', 'Prupe.4G019500' => 'ppe', 'Prupe.6G092500' => 'ppe', 'Prupe.6G119200' => 'ppe', 'Psat0s1945g0080' => 'psa', 'Psat0s4167g0040' => 'psa', 'Psat1g185800' => 'psa', 'Psat4g006440' => 'psa', 'Psat4g006480' => 'psa', 'Psat4g168120' => 'psa', 'Psat5g255680' => 'psa', 'Psat5g261760' => 'psa', 'Psat7g222120' => 'psa', 'PSO063G7252' => 'pso', 'PSO170G4778' => 'pso', 'PSO210G2249' => 'pso', 'PSO339G2411' => 'pso', 'PSO339G2457' => 'pso', 'PSO339G2854' => 'pso', 'PSO339G4288' => 'pso', 'PSO339G4615' => 'pso', 'PSO384G2796' => 'pso', 'PSO384G2940' => 'pso', 'PSO384G4227' => 'pso', 'PSO478G1425' => 'pso', 'PSO541G3863' => 'pso', 'PSO675G0507' => 'pso', 'PSO782G0338' => 'pso', 'PSO832G0644' => 'pso', 'QL01p013664' => 'qlo', 'QL01p036598' => 'qlo', 'QL05p072984' => 'qlo', 'QL08p005768' => 'qlo', 'QL08p032743' => 'qlo', 'QL93p0073_0439' => 'qlo', 'QL93p0073_0444' => 'qlo', 'RcHm_v2.0_Chr5g0002851' => 'rch', 'RcHm_v2.0_Chr5g0055201' => 'rch', 'RcHm_v2.0_Chr5g0061191' => 'rch', 'RcHm_v2.0_Chr7g0203231' => 'rch', 'Rhsim01G0208100' => 'rsi', 'Rhsim01G0208200' => 'rsi', 'Rhsim02G0106500' => 'rsi', 'Rhsim03G0107900' => 'rsi', 'Rhsim06G0163400' => 'rsi', 'Rhsim13G0105200' => 'rsi', 'Sabra04G0006300' => 'sbr', 'Sabra04G0127000' => 'sbr', 'Sabra08G0148700' => 'sbr', 'Sabra09G0117400' => 'sbr', 'SalBow1G3326' => 'sbo', 'SalBow3G3228' => 'sbo', 'SalBow6G1634' => 'sbo', 'SalBow6G3603' => 'sbo', 'SalBow6G5266' => 'sbo', 'SalBow7G2265' => 'sbo', 'SalBow8G0850' => 'sbo', 'SalBow8G2592' => 'sbo', 'Sc05g0009240' => 'sci', 'Sc12g0002300' => 'sci', 'Sc21g0000100' => 'sci', 'Sc21g0004720' => 'sci', 'Sed0002949' => 'sed', 'Sed0004114' => 'sed', 'Sed0004306' => 'sed', 'Sed0006172' => 'sed', 'Sed0008413' => 'sed', 'Sed0013809' => 'sed', 'Sed0019556' => 'sed', 'SEGI_03570' => 'sgi', 'SEGI_07859' => 'sgi', 'SEGI_15042' => 'sgi', 'SEGI_16263' => 'sgi', 'SEGI_16552' => 'sgi', 'SEGI_24331' => 'sgi', 'SEGI_27316' => 'sgi', 'SEGI_29521' => 'sgi', 'SEGI_41342' => 'sgi', 'SGA_v2.0_scaffold27G11617' => 'sas', 'SGA_v2.0_scaffold316G48428' => 'sas', 'SGA_v2.0_scaffold49G18261' => 'sas', 'SGA_v2.0_scaffold7G03831' => 'sas', 'SGA_v2.0_scaffold93G28359' => 'sas', 'SHI02210' => 'shi', 'SHI06028' => 'shi', 'SHI06321' => 'shi', 'SMO111G0012' => 'smo', 'SMO228G0080' => 'smo', 'SMO356G0756' => 'smo', 'Solyc02g080620.3' => 'sly', 'Solyc06g074530.1' => 'sly', 'Solyc11g066890.1' => 'sly', 'Solyc11g072520.3' => 'sly', 'Sopen02g025330' => 'spe', 'Sopen06g031000' => 'spe', 'Sopen09g008240' => 'spe', 'Sopen09g025210' => 'spe', 'Sopen11g026600' => 'spe', 'Sopen11g030170' => 'spe', 'Sp1g10420' => 'spa', 'Sp3g06570' => 'spa', 'Sp4g10660' => 'spa', 'Sp5g16460' => 'spa', 'Sp6g22710' => 'spa', 'TAR365G0112' => 'tar', 'TAR369G0717' => 'tar', 'TAR374G0976' => 'tar', 'TAR623G1128' => 'tar', 'TAR626G1937' => 'tar', 'TAR627G0123' => 'tar', 'TAR628G0305' => 'tar', 'TAR636G1176' => 'tar', 'TAR636G2442' => 'tar', 'THA.LOC104800556' => 'tha', 'THA.LOC104809501' => 'tha', 'THA.LOC104815126' => 'tha', 'THA.LOC104815732' => 'tha', 'THA.LOC104823528' => 'tha', 'Thecc.02G365600' => 'tca', 'Thecc.06G222300' => 'tca', 'Thecc.09G261800' => 'tca', 'Thecc.09G291400' => 'tca', 'Thhalv10003028m.g' => 'esa', 'Thhalv10007886m.g' => 'esa', 'Thhalv10016085m.g' => 'esa', 'Thhalv10016681m.g' => 'esa', 'Thhalv10020951m.g' => 'esa', 'TPR.G15598' => 'tpr', 'TPR.G29305' => 'tpr', 'TPR.G32395' => 'tpr', 'TPR.G36998' => 'tpr', 'TPR.G4227' => 'tpr', 'TWI18G1433' => 'twi', 'TWI31G0755' => 'twi', 'TWI38G0912' => 'twi', 'TWI75G1097' => 'twi', 'TWI75G1619' => 'twi', 'TWI79G1336' => 'twi', 'unitig_0.g943' => 'ugi', 'unitig_0.g944' => 'ugi', 'unitig_22.g6646' => 'ugi', 'unitig_37.g12681' => 'ugi', 'unitig_8.g3290' => 'ugi', 'vmacro03278' => 'vma', 'vmacro12197' => 'vma', 'vmacro14478' => 'vma', 'vmacro15787' => 'vma', 'vmacro15789' => 'vma', 'vmacro15790' => 'vma', 'vmacro15806' => 'vma', 'vmacro22907' => 'vma', 'vmacro22908' => 'vma', 'vmacro22909' => 'vma', 'vmacro23108' => 'vma', 'VMungo0540G0540' => 'vmu', 'VMungo0540G2468' => 'vmu', 'VMungo1080G0390' => 'vmu', 'VMungo1080G1165' => 'vmu', 'VMungo1127G0170' => 'vmu', 'VMungo1127G2099' => 'vmu', 'VMungo1215G3013' => 'vmu', 'Zm00001eb013110' => 'zma', 'Zm00001eb084260' => 'zma', 'Zm00001eb096110' => 'zma', 'Zm00001eb217510' => 'zma', 'Zm00001eb322550' => 'zma', 'Zm00001eb390770' => 'zma', 'Zm00001eb397170' => 'zma', 'Zm00001eb404610' => 'zma', 'Zm00001eb421790' => 'zma' ), 'gf_id' => 'HOM05D000911', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000911' ), 'data_identifier' => 'HOM05D000911', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000911', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27780' => 'bna', 'A03p35380' => 'bna', 'A04p21160' => 'bna', 'A05p40570' => 'bna', 'A06p26900' => 'bna', 'A08p33230' => 'bna', 'A09p65960' => 'bna', 'A10p18290' => 'bna', 'Aa31LG1G12990' => 'aar', 'Aa31LG1G2980' => 'aar', 'Aa31LG4G14320' => 'aar', 'Aa31LG7G11800' => 'aar', 'Aa31sc36G50' => 'aar', 'Aa31sc36G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3721' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5459' => 'aag', 'Actinidia03028' => 'ach', 'Actinidia03753' => 'ach', 'Actinidia04187' => 'ach', 'Actinidia05509' => 'ach', 'Actinidia24180' => 'ach', 'Actinidia26906' => 'ach', 'Actinidia37097' => 'ach', 'Actinidia38249' => 'ach', 'Ah.01g003470' => 'amhyb', 'Ah.01g004580' => 'amhyb', 'Ah.01g014850' => 'amhyb', 'Ah.01g016830' => 'amhyb', 'Ah.14g088000' => 'amhyb', 'AL1G22980' => 'aly', 'AL3G18990' => 'aly', 'AL4G22440' => 'aly', 'AL4G33180' => 'aly', 'AL5G22920' => 'aly', 'AL6G33660' => 'aly', 'AL8G20720' => 'aly', 'Aqoxy1G00935' => 'aox', 'Aqoxy1G02094' => 'aox', 'Aqoxy2G01239' => 'aox', 'Aqoxy4G01870' => 'aox', 'Aqoxy7G00450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.36ZVTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71EM27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5D6C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH3WRE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3NCM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RIM768' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YB5YRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z36GDV' => 'arhy', 'AT1G08250' => 'ath', 'AT1G11790' => 'ath', 'AT2G27820' => 'ath', 'AT3G07630' => 'ath', 'AT3G44720' => 'ath', 'AT5G22630' => 'ath', 'ATR0693G304' => 'atr', 'ATR0794G109' => 'atr', 'ATR0820G120' => 'atr', 'ATR1159G064' => 'atr', 'Atru.chr10.2239' => 'acertr', 'Atru.chr3.3371' => 'acertr', 'Atru.chr6.3202' => 'acertr', 'AUR62006499' => 'cqu', 'AUR62012718' => 'cqu', 'AUR62021938' => 'cqu', 'AUR62023932' => 'cqu', 'AUR62025034' => 'cqu', 'AUR62025035' => 'cqu', 'AUR62038307' => 'cqu', 'AUR62043466' => 'cqu', 'BcaB02g10748' => 'bca', 'BcaB03g13231' => 'bca', 'BcaB03g14689' => 'bca', 'BcaB05g22716' => 'bca', 'BcaB06g28172' => 'bca', 'BcaB08g36413' => 'bca', 'BcaC01g02186' => 'bca', 'BcaC01g04272' => 'bca', 'BcaC02g08080' => 'bca', 'BcaC02g08227' => 'bca', 'BcaC03g13901' => 'bca', 'BcaC04g19593' => 'bca', 'BcaC04g20874' => 'bca', 'BcaC05g29557' => 'bca', 'BcaC06g35505' => 'bca', 'BcaC07g41954' => 'bca', 'BcaC07g41955' => 'bca', 'BcaC07g41956' => 'bca', 'BcaC07g42519' => 'bca', 'BcaC07g42520' => 'bca', 'BcaC07g42523' => 'bca', 'BcaC07g42524' => 'bca', 'BcaC07g42525' => 'bca', 'BcaC08g47480' => 'bca', 'BcaC08g47481' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00530' => 'bna', 'BolC2t07178H' => 'bol', 'BolC3t16567H' => 'bol', 'BolC4t27234H' => 'bol', 'BolC5t29728H' => 'bol', 'BolC5t34622H' => 'bol', 'BolC6t40321H' => 'bol', 'BolC7t42028H' => 'bol', 'BolC8t49125H' => 'bol', 'BolC8t52538H' => 'bol', 'BolC8t52539H' => 'bol', 'BolC9t56681H' => 'bol', 'BolC9t58266H' => 'bol', 'BolSC21t60294H' => 'bol', 'BraA02t05670Z' => 'bra', 'BraA03t12716Z' => 'bra', 'BraA04t17685Z' => 'bra', 'BraA05t22788Z' => 'bra', 'BraA06t24032Z' => 'bra', 'BraA06t25625Z' => 'bra', 'BraA07t27930Z' => 'bra', 'BraA08t35242Z' => 'bra', 'BraA09t38609Z' => 'bra', 'BraA10t43905Z' => 'bra', 'C02p11060' => 'bna', 'C03p42990' => 'bna', 'C03p67310' => 'bna', 'C04p56990' => 'bna', 'C04p58660' => 'bna', 'C05p09890' => 'bna', 'C05p59680' => 'bna', 'C06p19830' => 'bna', 'C06p53040' => 'bna', 'C07p15230' => 'bna', 'C08p50070' => 'bna', 'C08p50090' => 'bna', 'C09p38330' => 'bna', 'C09p53940' => 'bna', 'CAN.G1014.1' => 'can', 'CAN.G644.30' => 'can', 'CAN.G84.47' => 'can', 'CAN.G919.8' => 'can', 'CANSAT54G0113' => 'cansat', 'CANSAT54G1286' => 'cansat', 'CANSAT64G1020' => 'cansat', 'CARHR008080' => 'chi', 'CARHR008090' => 'chi', 'CARHR012130' => 'chi', 'CARHR038390' => 'chi', 'CARHR082330' => 'chi', 'CARHR120520' => 'chi', 'CARHR151470' => 'chi', 'CARHR190950' => 'chi', 'Carub.0001s0760' => 'cru', 'Carub.0001s1146' => 'cru', 'Carub.0003s0721' => 'cru', 'Carub.0004s0858' => 'cru', 'Carub.0005s1040' => 'cru', 'Carub.0006s2035' => 'cru', 'Carub.0015s0005' => 'cru', 'Ca_01607_v3' => 'car', 'Ca_01677_v3' => 'car', 'Ca_06087_v3' => 'car', 'Ca_19238_v3' => 'car', 'Ca_19373_v3' => 'car', 'Ca_21079_v3' => 'car', 'CBR_g54016' => 'cbr', 'CBR_g54018' => 'cbr', 'CBR_g54020' => 'cbr', 'Cc01_g09780' => 'ccan', 'Cc01_g11680' => 'ccan', 'Cc02_g15610' => 'ccan', 'Cc05_g04350' => 'ccan', 'Cc09_g01580' => 'ccan', 'CDE01G0795' => 'cde', 'CDE02G2024' => 'cde', 'CDE02G2260' => 'cde', 'CDE02G4561' => 'cde', 'CDE05G2733' => 'cde', 'CDE05G3422' => 'cde', 'CDE06G2003' => 'cde', 'CDE08G0576' => 'cde', 'CDE09G0048' => 'cde', 'CDE11G0805' => 'cde', 'Cfa003644' => 'cfa', 'Cfa006290' => 'cfa', 'Cfa010080' => 'cfa', 'Cfa011376' => 'cfa', 'Cfa011576' => 'cfa', 'Cfa011577' => 'cfa', 'Cfa014389' => 'cfa', 'Ciclev10006044m.g' => 'ccl', 'Ciclev10006954m.g' => 'ccl', 'Ciclev10015131m.g' => 'ccl', 'Ciclev10015580m.g' => 'ccl', 'Ciclev10028359m.g' => 'ccl', 'Ciclev10028573m.g' => 'ccl', 'CiPaw.03G159300' => 'cil', 'CiPaw.04G115100' => 'cil', 'CiPaw.09G092800' => 'cil', 'CiPaw.10G071800' => 'cil', 'CiPaw.13G105800' => 'cil', 'CiPaw.13G141000' => 'cil', 'CiPaw.14G103400' => 'cil', 'ClCG01G012700' => 'cla', 'ClCG01G012720' => 'cla', 'ClCG01G021920' => 'cla', 'ClCG02G008870' => 'cla', 'ClCG02G020840' => 'cla', 'ClCG02G021930' => 'cla', 'COL.COLO4_19302' => 'col', 'COL.COLO4_25262' => 'col', 'COL.COLO4_31788' => 'col', 'Cpa.g.c34684' => 'cpa', 'Cpa.g.c36520.1' => 'cpa', 'Cpa.g.c45626' => 'cpa', 'Cpa.g.sc121.17' => 'cpa', 'Cpa.g.sc13.22' => 'cpa', 'Cpa.g.sc87.88' => 'cpa', 'Cre06.g261800' => 'cre', 'CsaV3_1G014500' => 'csa', 'CsaV3_1G014510' => 'csa', 'CsaV3_2G034880' => 'csa', 'CsaV3_6G014760' => 'csa', 'CsaV3_6G021500' => 'csa', 'CsaV3_6G048980' => 'csa', 'CSS0002511' => 'camsi', 'CSS0007556' => 'camsi', 'CSS0008532' => 'camsi', 'CSS0009709' => 'camsi', 'CSS0010486' => 'camsi', 'CSS0016768' => 'camsi', 'CSS0023512' => 'camsi', 'CSS0025341' => 'camsi', 'CSS0027999' => 'camsi', 'CSS0028944' => 'camsi', 'CSS0032292' => 'camsi', 'CSS0032464' => 'camsi', 'CSS0037153' => 'camsi', 'CSS0039256' => 'camsi', 'CSS0048392' => 'camsi', 'CSS0050458' => 'camsi', 'DCAR_004224' => 'dca', 'DCAR_006147' => 'dca', 'DCAR_006465' => 'dca', 'DCAR_008159' => 'dca', 'DCAR_012164' => 'dca', 'DCAR_019764' => 'dca', 'Dinv05418' => 'din', 'Dinv10839' => 'din', 'Dinv12521' => 'din', 'Dinv13900' => 'din', 'Dinv29426' => 'din', 'Duzib150G0263' => 'dzi', 'Duzib168G1178' => 'dzi', 'Duzib168G1924' => 'dzi', 'Duzib170G0299' => 'dzi', 'Duzib170G0813' => 'dzi', 'Duzib235G1128' => 'dzi', 'Duzib248G1060' => 'dzi', 'ECA232G1910' => 'eca', 'ECA233G4621' => 'eca', 'ECA238G1216' => 'eca', 'ECA238G1784' => 'eca', 'ECA248G1242' => 'eca', 'EL10Ac8g20071' => 'bvu', 'EL10Ac9g21086' => 'bvu', 'EL10Ac9g22407' => 'bvu', 'EL10Ac9g22412' => 'bvu', 'Eucgr.A01119' => 'egr', 'Eucgr.E04043' => 'egr', 'Eucgr.J00428' => 'egr', 'Eucgr.J00958' => 'egr', 'FAN11G3091' => 'fan', 'FAN11G3651' => 'fan', 'FAN16G2566' => 'fan', 'FAN21G3155' => 'fan', 'FAN21G3400' => 'fan', 'FAN21G3543' => 'fan', 'FAN25G0234' => 'fan', 'FAN25G1422' => 'fan', 'FAN25G3392' => 'fan', 'FvH4_3g01940' => 'fve', 'FvH4_3g29870' => 'fve', 'FvH4_3g33680' => 'fve', 'Glyma.09G004200' => 'gma', 'Glyma.11G151288' => 'gma', 'Glyma.11G189100' => 'gma', 'Glyma.12G072500' => 'gma', 'Glyma.12G085500' => 'gma', 'Glyma.12G181800' => 'gma', 'Glyma.12G193000' => 'gma', 'Glyma.13G309300' => 'gma', 'Glyma.13G319000' => 'gma', 'Glyma.17G012600' => 'gma', 'Gohir.A06G148600' => 'ghi', 'Gohir.A07G115800' => 'ghi', 'Gohir.A08G003600' => 'ghi', 'Gohir.A09G093300' => 'ghi', 'Gohir.A09G105400' => 'ghi', 'Gohir.A09G105500' => 'ghi', 'Gohir.D06G154600' => 'ghi', 'Gohir.D07G120200' => 'ghi', 'Gohir.D08G013900' => 'ghi', 'Gohir.D09G093100' => 'ghi', 'Gohir.D09G102200' => 'ghi', 'Gohir.D09G102300' => 'ghi', 'Gorai.001G129400' => 'gra', 'Gorai.004G008200' => 'gra', 'Gorai.006G109800' => 'gra', 'Gorai.006G119500' => 'gra', 'Gorai.006G121300' => 'gra', 'Gorai.010G180700' => 'gra', 'GSVIVG01012716001' => 'vvi', 'GSVIVG01025118001' => 'vvi', 'GSVIVG01030439001' => 'vvi', 'GSVIVG01031397001' => 'vvi', 'HanXRQChr01g0004201' => 'han', 'HanXRQChr02g0054941' => 'han', 'HanXRQChr05g0141811' => 'han', 'HanXRQChr07g0197751' => 'han', 'HanXRQChr11g0346691' => 'han', 'HanXRQChr13g0396971' => 'han', 'HanXRQChr14g0432951' => 'han', 'HanXRQChr14g0452001' => 'han', 'HanXRQChr15g0496681' => 'han', 'HanXRQChr17g0557491' => 'han', 'HanXRQChr17g0557501' => 'han', 'Haze_06809' => 'cav', 'Haze_12852' => 'cav', 'Haze_15850' => 'cav', 'Haze_23446' => 'cav', 'Haze_23942' => 'cav', 'Haze_23943' => 'cav', 'Hma1.2p1_0091F.1_g046450' => 'hma', 'Hma1.2p1_0128F.1_g059910' => 'hma', 'Hma1.2p1_0249F.1_g102260' => 'hma', 'Hma1.2p1_0453F.1_g156190' => 'hma', 'Hma1.2p1_0695F.1_g204380' => 'hma', 'Hma1.2p1_0749F.1_g212650' => 'hma', 'Hma1.2p1_2156F.1_g315420' => 'hma', 'Hma1.2p1_2686F.1_g326940' => 'hma', 'HPP92_006428' => 'vpl', 'HPP92_012069' => 'vpl', 'HPP92_014129' => 'vpl', 'HPP92_014133' => 'vpl', 'HPP92_017315' => 'vpl', 'HPP92_026445' => 'vpl', 'HPP92_026446' => 'vpl', 'Hund00774' => 'sun', 'Hund07682' => 'sun', 'Hund21413' => 'sun', 'Hund23462' => 'sun', 'Hund23463' => 'sun', 'Lalb_Chr03g0027911' => 'lal', 'Lalb_Chr13g0304271' => 'lal', 'Lalb_Chr19g0137471' => 'lal', 'Lalb_Chr22g0350651' => 'lal', 'Lalb_Chr24g0395151' => 'lal', 'Lj1A1231T40' => 'lonja', 'Lj1A221T48' => 'lonja', 'Lj1C924T12' => 'lonja', 'Lj2C993G6' => 'lonja', 'Lj3g0005790' => 'lja', 'Lj3g0015432' => 'lja', 'Lj3g0017722' => 'lja', 'Lj3g0018497' => 'lja', 'Lj4g0025071' => 'lja', 'Lsat_1_v5_gn_1_129680' => 'lsa', 'Lsat_1_v5_gn_2_25321' => 'lsa', 'Lsat_1_v5_gn_2_95461' => 'lsa', 'Lsat_1_v5_gn_4_159620' => 'lsa', 'Lsat_1_v5_gn_6_41301' => 'lsa', 'Lsat_1_v5_gn_6_74660' => 'lsa', 'Lsat_1_v5_gn_7_11520' => 'lsa', 'Lsat_1_v5_gn_9_67680' => 'lsa', 'Manes.04G008300' => 'mes', 'Manes.04G008400' => 'mes', 'Manes.04G026500' => 'mes', 'Manes.10G135300' => 'mes', 'Manes.11G157300' => 'mes', 'Manes.12G074000' => 'mes', 'Manes.16G006200' => 'mes', 'Manes.17G026400' => 'mes', 'Mapoly0024s0086' => 'mpo', 'Mapoly0024s0087' => 'mpo', 'Mapoly0071s0057' => 'mpo', 'Mapoly0204s0012' => 'mpo', 'MBI04_g37681_MAGBIO' => 'mbi', 'MBI05_g17779_MAGBIO' => 'mbi', 'MBI12_g31184_MAGBIO' => 'mbi', 'MBI17_g11083_MAGBIO' => 'mbi', 'MBI18_g03883_MAGBIO' => 'mbi', 'MBI18_g28940_MAGBIO' => 'mbi', 'MCO01G690' => 'mco', 'MD03G1109900' => 'mdo', 'MD03G1134800' => 'mdo', 'MD05G1348000' => 'mdo', 'MD10G1322400' => 'mdo', 'MD11G1123300' => 'mdo', 'MD11G1157600' => 'mdo', 'Medtr2g084875' => 'mtr', 'Medtr2g088130' => 'mtr', 'Medtr4g055310' => 'mtr', 'Medtr4g061070' => 'mtr', 'Medtr4g132250' => 'mtr', 'MELO3C004795.2' => 'cme', 'MELO3C004797.2' => 'cme', 'MELO3C007396.2' => 'cme', 'MELO3C019277.2' => 'cme', 'MELO3C021449.2' => 'cme', 'MELO3C025736.2' => 'cme', 'Migut.D02175' => 'egut', 'Migut.H01573' => 'egut', 'Migut.M01327' => 'egut', 'Migut.N02513' => 'egut', 'MSTRG.14638' => 'ama', 'MSTRG.18632' => 'ama', 'MSTRG.7203' => 'ama', 'Nitab4.5_0000533g0140' => 'nta', 'Nitab4.5_0000888g0150' => 'nta', 'Nitab4.5_0001453g0040' => 'nta', 'Nitab4.5_0002827g0090' => 'nta', 'Nitab4.5_0003082g0040' => 'nta', 'Nitab4.5_0007799g0040' => 'nta', 'Nitab4.5_0008983g0010' => 'nta', 'Nitab4.5_0009017g0020' => 'nta', 'Nn1g02132' => 'nnu', 'Nn1g03492' => 'nnu', 'Nn1g03493' => 'nnu', 'Nn1g03494' => 'nnu', 'Nn1g07164' => 'nnu', 'Nn1g07291' => 'nnu', 'Nn2g10655' => 'nnu', 'Nn2g11652' => 'nnu', 'Nn2g14008' => 'nnu', 'Nn3g17476' => 'nnu', 'Nn3g17477' => 'nnu', 'Nn4g22370' => 'nnu', 'Nn4g25255' => 'nnu', 'Nn5g27755' => 'nnu', 'Nn6g34260' => 'nnu', 'Nn6g35041' => 'nnu', 'Oeu005924.1' => 'oeu', 'Oeu008383.1' => 'oeu', 'Oeu014928.1' => 'oeu', 'Oeu019889.1' => 'oeu', 'Oeu022271.1' => 'oeu', 'Oeu025271.1' => 'oeu', 'Oeu036302.1' => 'oeu', 'Oeu044100.1' => 'oeu', 'Os01g0528300' => 'osa', 'Os03g0286200' => 'osa', 'Os04g0406600' => 'osa', 'Os07g0512000' => 'osa', 'Os07g0694600' => 'osa', 'Os08g0411000' => 'osa', 'Os09g0565700' => 'osa', 'Os09g0566050' => 'osa', 'Os10g0523700' => 'osa', 'Peaxi162Scf00002g00514' => 'pax', 'Peaxi162Scf00047g01817' => 'pax', 'Peaxi162Scf00114g00001' => 'pax', 'Peaxi162Scf00147g00613' => 'pax', 'Peaxi162Scf00389g00425' => 'pax', 'PGR042G1139' => 'pgr', 'PGR042G3273' => 'pgr', 'PGR102G2180' => 'pgr', 'PGR119G0234' => 'pgr', 'PGR119G0668' => 'pgr', 'PGSC0003DMG400007122' => 'stu', 'PGSC0003DMG400016478' => 'stu', 'PGSC0003DMG400025374' => 'stu', 'PGSC0003DMG400026536' => 'stu', 'Phvul.003G079600' => 'pvu', 'Phvul.005G115600' => 'pvu', 'Phvul.005G127100' => 'pvu', 'Phvul.006G149500' => 'pvu', 'Phvul.006G149600' => 'pvu', 'Phvul.011G071800' => 'pvu', 'Phvul.011G090400' => 'pvu', 'Potri.004G013400' => 'ptr', 'Potri.004G188100' => 'ptr', 'Potri.008G195500' => 'ptr', 'Potri.009G148800' => 'ptr', 'Potri.011G004700' => 'ptr', 'Pp3c17_22810' => 'ppa', 'Pp3c18_4480' => 'ppa', 'Pp3c19_13030' => 'ppa', 'Pp3c1_33620' => 'ppa', 'Pp3c2_9380' => 'ppa', 'PRCOL_00001023' => 'pco', 'Prupe.3G216300' => 'ppe', 'Prupe.4G019500' => 'ppe', 'Prupe.6G092500' => 'ppe', 'Prupe.6G119200' => 'ppe', 'Psat0s1945g0080' => 'psa', 'Psat0s4167g0040' => 'psa', 'Psat1g185800' => 'psa', 'Psat4g006440' => 'psa', 'Psat4g006480' => 'psa', 'Psat4g168120' => 'psa', 'Psat5g255680' => 'psa', 'Psat5g261760' => 'psa', 'Psat7g222120' => 'psa', 'PSO063G7252' => 'pso', 'PSO170G4778' => 'pso', 'PSO210G2249' => 'pso', 'PSO339G2411' => 'pso', 'PSO339G2457' => 'pso', 'PSO339G2854' => 'pso', 'PSO339G4288' => 'pso', 'PSO339G4615' => 'pso', 'PSO384G2796' => 'pso', 'PSO384G2940' => 'pso', 'PSO384G4227' => 'pso', 'PSO478G1425' => 'pso', 'PSO541G3863' => 'pso', 'PSO675G0507' => 'pso', 'PSO782G0338' => 'pso', 'PSO832G0644' => 'pso', 'QL01p013664' => 'qlo', 'QL01p036598' => 'qlo', 'QL05p072984' => 'qlo', 'QL08p005768' => 'qlo', 'QL08p032743' => 'qlo', 'QL93p0073_0439' => 'qlo', 'QL93p0073_0444' => 'qlo', 'RcHm_v2.0_Chr5g0002851' => 'rch', 'RcHm_v2.0_Chr5g0055201' => 'rch', 'RcHm_v2.0_Chr5g0061191' => 'rch', 'RcHm_v2.0_Chr7g0203231' => 'rch', 'Rhsim01G0208100' => 'rsi', 'Rhsim01G0208200' => 'rsi', 'Rhsim02G0106500' => 'rsi', 'Rhsim03G0107900' => 'rsi', 'Rhsim06G0163400' => 'rsi', 'Rhsim13G0105200' => 'rsi', 'Sabra04G0006300' => 'sbr', 'Sabra04G0127000' => 'sbr', 'Sabra08G0148700' => 'sbr', 'Sabra09G0117400' => 'sbr', 'SalBow1G3326' => 'sbo', 'SalBow3G3228' => 'sbo', 'SalBow6G1634' => 'sbo', 'SalBow6G3603' => 'sbo', 'SalBow6G5266' => 'sbo', 'SalBow7G2265' => 'sbo', 'SalBow8G0850' => 'sbo', 'SalBow8G2592' => 'sbo', 'Sc05g0009240' => 'sci', 'Sc12g0002300' => 'sci', 'Sc21g0000100' => 'sci', 'Sc21g0004720' => 'sci', 'Sed0002949' => 'sed', 'Sed0004114' => 'sed', 'Sed0004306' => 'sed', 'Sed0006172' => 'sed', 'Sed0008413' => 'sed', 'Sed0013809' => 'sed', 'Sed0019556' => 'sed', 'SEGI_03570' => 'sgi', 'SEGI_07859' => 'sgi', 'SEGI_15042' => 'sgi', 'SEGI_16263' => 'sgi', 'SEGI_16552' => 'sgi', 'SEGI_24331' => 'sgi', 'SEGI_27316' => 'sgi', 'SEGI_29521' => 'sgi', 'SEGI_41342' => 'sgi', 'SGA_v2.0_scaffold27G11617' => 'sas', 'SGA_v2.0_scaffold316G48428' => 'sas', 'SGA_v2.0_scaffold49G18261' => 'sas', 'SGA_v2.0_scaffold7G03831' => 'sas', 'SGA_v2.0_scaffold93G28359' => 'sas', 'SHI02210' => 'shi', 'SHI06028' => 'shi', 'SHI06321' => 'shi', 'SMO111G0012' => 'smo', 'SMO228G0080' => 'smo', 'SMO356G0756' => 'smo', 'Solyc02g080620.3' => 'sly', 'Solyc06g074530.1' => 'sly', 'Solyc11g066890.1' => 'sly', 'Solyc11g072520.3' => 'sly', 'Sopen02g025330' => 'spe', 'Sopen06g031000' => 'spe', 'Sopen09g008240' => 'spe', 'Sopen09g025210' => 'spe', 'Sopen11g026600' => 'spe', 'Sopen11g030170' => 'spe', 'Sp1g10420' => 'spa', 'Sp3g06570' => 'spa', 'Sp4g10660' => 'spa', 'Sp5g16460' => 'spa', 'Sp6g22710' => 'spa', 'TAR365G0112' => 'tar', 'TAR369G0717' => 'tar', 'TAR374G0976' => 'tar', 'TAR623G1128' => 'tar', 'TAR626G1937' => 'tar', 'TAR627G0123' => 'tar', 'TAR628G0305' => 'tar', 'TAR636G1176' => 'tar', 'TAR636G2442' => 'tar', 'THA.LOC104800556' => 'tha', 'THA.LOC104809501' => 'tha', 'THA.LOC104815126' => 'tha', 'THA.LOC104815732' => 'tha', 'THA.LOC104823528' => 'tha', 'Thecc.02G365600' => 'tca', 'Thecc.06G222300' => 'tca', 'Thecc.09G261800' => 'tca', 'Thecc.09G291400' => 'tca', 'Thhalv10003028m.g' => 'esa', 'Thhalv10007886m.g' => 'esa', 'Thhalv10016085m.g' => 'esa', 'Thhalv10016681m.g' => 'esa', 'Thhalv10020951m.g' => 'esa', 'TPR.G15598' => 'tpr', 'TPR.G29305' => 'tpr', 'TPR.G32395' => 'tpr', 'TPR.G36998' => 'tpr', 'TPR.G4227' => 'tpr', 'TWI18G1433' => 'twi', 'TWI31G0755' => 'twi', 'TWI38G0912' => 'twi', 'TWI75G1097' => 'twi', 'TWI75G1619' => 'twi', 'TWI79G1336' => 'twi', 'unitig_0.g943' => 'ugi', 'unitig_0.g944' => 'ugi', 'unitig_22.g6646' => 'ugi', 'unitig_37.g12681' => 'ugi', 'unitig_8.g3290' => 'ugi', 'vmacro03278' => 'vma', 'vmacro12197' => 'vma', 'vmacro14478' => 'vma', 'vmacro15787' => 'vma', 'vmacro15789' => 'vma', 'vmacro15790' => 'vma', 'vmacro15806' => 'vma', 'vmacro22907' => 'vma', 'vmacro22908' => 'vma', 'vmacro22909' => 'vma', 'vmacro23108' => 'vma', 'VMungo0540G0540' => 'vmu', 'VMungo0540G2468' => 'vmu', 'VMungo1080G0390' => 'vmu', 'VMungo1080G1165' => 'vmu', 'VMungo1127G0170' => 'vmu', 'VMungo1127G2099' => 'vmu', 'VMungo1215G3013' => 'vmu', 'Zm00001eb013110' => 'zma', 'Zm00001eb084260' => 'zma', 'Zm00001eb096110' => 'zma', 'Zm00001eb217510' => 'zma', 'Zm00001eb322550' => 'zma', 'Zm00001eb390770' => 'zma', 'Zm00001eb397170' => 'zma', 'Zm00001eb404610' => 'zma', 'Zm00001eb421790' => 'zma' ) $gf_id = 'HOM05D000911' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000911' ) $data_identifier = 'HOM05D000911' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 16, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 5, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 6, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 8, 'nnu' => (int) 16, 'oeu' => (int) 8, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 5, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 16, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421790' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000911', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27780' => 'bna', 'A03p35380' => 'bna', 'A04p21160' => 'bna', 'A05p40570' => 'bna', 'A06p26900' => 'bna', 'A08p33230' => 'bna', 'A09p65960' => 'bna', 'A10p18290' => 'bna', 'Aa31LG1G12990' => 'aar', 'Aa31LG1G2980' => 'aar', 'Aa31LG4G14320' => 'aar', 'Aa31LG7G11800' => 'aar', 'Aa31sc36G50' => 'aar', 'Aa31sc36G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3721' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5459' => 'aag', 'Actinidia03028' => 'ach', 'Actinidia03753' => 'ach', 'Actinidia04187' => 'ach', 'Actinidia05509' => 'ach', 'Actinidia24180' => 'ach', 'Actinidia26906' => 'ach', 'Actinidia37097' => 'ach', 'Actinidia38249' => 'ach', 'Ah.01g003470' => 'amhyb', 'Ah.01g004580' => 'amhyb', 'Ah.01g014850' => 'amhyb', 'Ah.01g016830' => 'amhyb', 'Ah.14g088000' => 'amhyb', 'AL1G22980' => 'aly', 'AL3G18990' => 'aly', 'AL4G22440' => 'aly', 'AL4G33180' => 'aly', 'AL5G22920' => 'aly', 'AL6G33660' => 'aly', 'AL8G20720' => 'aly', 'Aqoxy1G00935' => 'aox', 'Aqoxy1G02094' => 'aox', 'Aqoxy2G01239' => 'aox', 'Aqoxy4G01870' => 'aox', 'Aqoxy7G00450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.36ZVTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71EM27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5D6C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH3WRE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3NCM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RIM768' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YB5YRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z36GDV' => 'arhy', 'AT1G08250' => 'ath', 'AT1G11790' => 'ath', 'AT2G27820' => 'ath', 'AT3G07630' => 'ath', 'AT3G44720' => 'ath', 'AT5G22630' => 'ath', 'ATR0693G304' => 'atr', 'ATR0794G109' => 'atr', 'ATR0820G120' => 'atr', 'ATR1159G064' => 'atr', 'Atru.chr10.2239' => 'acertr', 'Atru.chr3.3371' => 'acertr', 'Atru.chr6.3202' => 'acertr', 'AUR62006499' => 'cqu', 'AUR62012718' => 'cqu', 'AUR62021938' => 'cqu', 'AUR62023932' => 'cqu', 'AUR62025034' => 'cqu', 'AUR62025035' => 'cqu', 'AUR62038307' => 'cqu', 'AUR62043466' => 'cqu', 'BcaB02g10748' => 'bca', 'BcaB03g13231' => 'bca', 'BcaB03g14689' => 'bca', 'BcaB05g22716' => 'bca', 'BcaB06g28172' => 'bca', 'BcaB08g36413' => 'bca', 'BcaC01g02186' => 'bca', 'BcaC01g04272' => 'bca', 'BcaC02g08080' => 'bca', 'BcaC02g08227' => 'bca', 'BcaC03g13901' => 'bca', 'BcaC04g19593' => 'bca', 'BcaC04g20874' => 'bca', 'BcaC05g29557' => 'bca', 'BcaC06g35505' => 'bca', 'BcaC07g41954' => 'bca', 'BcaC07g41955' => 'bca', 'BcaC07g41956' => 'bca', 'BcaC07g42519' => 'bca', 'BcaC07g42520' => 'bca', 'BcaC07g42523' => 'bca', 'BcaC07g42524' => 'bca', 'BcaC07g42525' => 'bca', 'BcaC08g47480' => 'bca', 'BcaC08g47481' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00530' => 'bna', 'BolC2t07178H' => 'bol', 'BolC3t16567H' => 'bol', 'BolC4t27234H' => 'bol', 'BolC5t29728H' => 'bol', 'BolC5t34622H' => 'bol', 'BolC6t40321H' => 'bol', 'BolC7t42028H' => 'bol', 'BolC8t49125H' => 'bol', 'BolC8t52538H' => 'bol', 'BolC8t52539H' => 'bol', 'BolC9t56681H' => 'bol', 'BolC9t58266H' => 'bol', 'BolSC21t60294H' => 'bol', 'BraA02t05670Z' => 'bra', 'BraA03t12716Z' => 'bra', 'BraA04t17685Z' => 'bra', 'BraA05t22788Z' => 'bra', 'BraA06t24032Z' => 'bra', 'BraA06t25625Z' => 'bra', 'BraA07t27930Z' => 'bra', 'BraA08t35242Z' => 'bra', 'BraA09t38609Z' => 'bra', 'BraA10t43905Z' => 'bra', 'C02p11060' => 'bna', 'C03p42990' => 'bna', 'C03p67310' => 'bna', 'C04p56990' => 'bna', 'C04p58660' => 'bna', 'C05p09890' => 'bna', 'C05p59680' => 'bna', 'C06p19830' => 'bna', 'C06p53040' => 'bna', 'C07p15230' => 'bna', 'C08p50070' => 'bna', 'C08p50090' => 'bna', 'C09p38330' => 'bna', 'C09p53940' => 'bna', 'CAN.G1014.1' => 'can', 'CAN.G644.30' => 'can', 'CAN.G84.47' => 'can', 'CAN.G919.8' => 'can', 'CANSAT54G0113' => 'cansat', 'CANSAT54G1286' => 'cansat', 'CANSAT64G1020' => 'cansat', 'CARHR008080' => 'chi', 'CARHR008090' => 'chi', 'CARHR012130' => 'chi', 'CARHR038390' => 'chi', 'CARHR082330' => 'chi', 'CARHR120520' => 'chi', 'CARHR151470' => 'chi', 'CARHR190950' => 'chi', 'Carub.0001s0760' => 'cru', 'Carub.0001s1146' => 'cru', 'Carub.0003s0721' => 'cru', 'Carub.0004s0858' => 'cru', 'Carub.0005s1040' => 'cru', 'Carub.0006s2035' => 'cru', 'Carub.0015s0005' => 'cru', 'Ca_01607_v3' => 'car', 'Ca_01677_v3' => 'car', 'Ca_06087_v3' => 'car', 'Ca_19238_v3' => 'car', 'Ca_19373_v3' => 'car', 'Ca_21079_v3' => 'car', 'CBR_g54016' => 'cbr', 'CBR_g54018' => 'cbr', 'CBR_g54020' => 'cbr', 'Cc01_g09780' => 'ccan', 'Cc01_g11680' => 'ccan', 'Cc02_g15610' => 'ccan', 'Cc05_g04350' => 'ccan', 'Cc09_g01580' => 'ccan', 'CDE01G0795' => 'cde', 'CDE02G2024' => 'cde', 'CDE02G2260' => 'cde', 'CDE02G4561' => 'cde', 'CDE05G2733' => 'cde', 'CDE05G3422' => 'cde', 'CDE06G2003' => 'cde', 'CDE08G0576' => 'cde', 'CDE09G0048' => 'cde', 'CDE11G0805' => 'cde', 'Cfa003644' => 'cfa', 'Cfa006290' => 'cfa', 'Cfa010080' => 'cfa', 'Cfa011376' => 'cfa', 'Cfa011576' => 'cfa', 'Cfa011577' => 'cfa', 'Cfa014389' => 'cfa', 'Ciclev10006044m.g' => 'ccl', 'Ciclev10006954m.g' => 'ccl', 'Ciclev10015131m.g' => 'ccl', 'Ciclev10015580m.g' => 'ccl', 'Ciclev10028359m.g' => 'ccl', 'Ciclev10028573m.g' => 'ccl', 'CiPaw.03G159300' => 'cil', 'CiPaw.04G115100' => 'cil', 'CiPaw.09G092800' => 'cil', 'CiPaw.10G071800' => 'cil', 'CiPaw.13G105800' => 'cil', 'CiPaw.13G141000' => 'cil', 'CiPaw.14G103400' => 'cil', 'ClCG01G012700' => 'cla', 'ClCG01G012720' => 'cla', 'ClCG01G021920' => 'cla', 'ClCG02G008870' => 'cla', 'ClCG02G020840' => 'cla', 'ClCG02G021930' => 'cla', 'COL.COLO4_19302' => 'col', 'COL.COLO4_25262' => 'col', 'COL.COLO4_31788' => 'col', 'Cpa.g.c34684' => 'cpa', 'Cpa.g.c36520.1' => 'cpa', 'Cpa.g.c45626' => 'cpa', 'Cpa.g.sc121.17' => 'cpa', 'Cpa.g.sc13.22' => 'cpa', 'Cpa.g.sc87.88' => 'cpa', 'Cre06.g261800' => 'cre', 'CsaV3_1G014500' => 'csa', 'CsaV3_1G014510' => 'csa', 'CsaV3_2G034880' => 'csa', 'CsaV3_6G014760' => 'csa', 'CsaV3_6G021500' => 'csa', 'CsaV3_6G048980' => 'csa', 'CSS0002511' => 'camsi', 'CSS0007556' => 'camsi', 'CSS0008532' => 'camsi', 'CSS0009709' => 'camsi', 'CSS0010486' => 'camsi', 'CSS0016768' => 'camsi', 'CSS0023512' => 'camsi', 'CSS0025341' => 'camsi', 'CSS0027999' => 'camsi', 'CSS0028944' => 'camsi', 'CSS0032292' => 'camsi', 'CSS0032464' => 'camsi', 'CSS0037153' => 'camsi', 'CSS0039256' => 'camsi', 'CSS0048392' => 'camsi', 'CSS0050458' => 'camsi', 'DCAR_004224' => 'dca', 'DCAR_006147' => 'dca', 'DCAR_006465' => 'dca', 'DCAR_008159' => 'dca', 'DCAR_012164' => 'dca', 'DCAR_019764' => 'dca', 'Dinv05418' => 'din', 'Dinv10839' => 'din', 'Dinv12521' => 'din', 'Dinv13900' => 'din', 'Dinv29426' => 'din', 'Duzib150G0263' => 'dzi', 'Duzib168G1178' => 'dzi', 'Duzib168G1924' => 'dzi', 'Duzib170G0299' => 'dzi', 'Duzib170G0813' => 'dzi', 'Duzib235G1128' => 'dzi', 'Duzib248G1060' => 'dzi', 'ECA232G1910' => 'eca', 'ECA233G4621' => 'eca', 'ECA238G1216' => 'eca', 'ECA238G1784' => 'eca', 'ECA248G1242' => 'eca', 'EL10Ac8g20071' => 'bvu', 'EL10Ac9g21086' => 'bvu', 'EL10Ac9g22407' => 'bvu', 'EL10Ac9g22412' => 'bvu', 'Eucgr.A01119' => 'egr', 'Eucgr.E04043' => 'egr', 'Eucgr.J00428' => 'egr', 'Eucgr.J00958' => 'egr', 'FAN11G3091' => 'fan', 'FAN11G3651' => 'fan', 'FAN16G2566' => 'fan', 'FAN21G3155' => 'fan', 'FAN21G3400' => 'fan', 'FAN21G3543' => 'fan', 'FAN25G0234' => 'fan', 'FAN25G1422' => 'fan', 'FAN25G3392' => 'fan', 'FvH4_3g01940' => 'fve', 'FvH4_3g29870' => 'fve', 'FvH4_3g33680' => 'fve', 'Glyma.09G004200' => 'gma', 'Glyma.11G151288' => 'gma', 'Glyma.11G189100' => 'gma', 'Glyma.12G072500' => 'gma', 'Glyma.12G085500' => 'gma', 'Glyma.12G181800' => 'gma', 'Glyma.12G193000' => 'gma', 'Glyma.13G309300' => 'gma', 'Glyma.13G319000' => 'gma', 'Glyma.17G012600' => 'gma', 'Gohir.A06G148600' => 'ghi', 'Gohir.A07G115800' => 'ghi', 'Gohir.A08G003600' => 'ghi', 'Gohir.A09G093300' => 'ghi', 'Gohir.A09G105400' => 'ghi', 'Gohir.A09G105500' => 'ghi', 'Gohir.D06G154600' => 'ghi', 'Gohir.D07G120200' => 'ghi', 'Gohir.D08G013900' => 'ghi', 'Gohir.D09G093100' => 'ghi', 'Gohir.D09G102200' => 'ghi', 'Gohir.D09G102300' => 'ghi', 'Gorai.001G129400' => 'gra', 'Gorai.004G008200' => 'gra', 'Gorai.006G109800' => 'gra', 'Gorai.006G119500' => 'gra', 'Gorai.006G121300' => 'gra', 'Gorai.010G180700' => 'gra', 'GSVIVG01012716001' => 'vvi', 'GSVIVG01025118001' => 'vvi', 'GSVIVG01030439001' => 'vvi', 'GSVIVG01031397001' => 'vvi', 'HanXRQChr01g0004201' => 'han', 'HanXRQChr02g0054941' => 'han', 'HanXRQChr05g0141811' => 'han', 'HanXRQChr07g0197751' => 'han', 'HanXRQChr11g0346691' => 'han', 'HanXRQChr13g0396971' => 'han', 'HanXRQChr14g0432951' => 'han', 'HanXRQChr14g0452001' => 'han', 'HanXRQChr15g0496681' => 'han', 'HanXRQChr17g0557491' => 'han', 'HanXRQChr17g0557501' => 'han', 'Haze_06809' => 'cav', 'Haze_12852' => 'cav', 'Haze_15850' => 'cav', 'Haze_23446' => 'cav', 'Haze_23942' => 'cav', 'Haze_23943' => 'cav', 'Hma1.2p1_0091F.1_g046450' => 'hma', 'Hma1.2p1_0128F.1_g059910' => 'hma', 'Hma1.2p1_0249F.1_g102260' => 'hma', 'Hma1.2p1_0453F.1_g156190' => 'hma', 'Hma1.2p1_0695F.1_g204380' => 'hma', 'Hma1.2p1_0749F.1_g212650' => 'hma', 'Hma1.2p1_2156F.1_g315420' => 'hma', 'Hma1.2p1_2686F.1_g326940' => 'hma', 'HPP92_006428' => 'vpl', 'HPP92_012069' => 'vpl', 'HPP92_014129' => 'vpl', 'HPP92_014133' => 'vpl', 'HPP92_017315' => 'vpl', 'HPP92_026445' => 'vpl', 'HPP92_026446' => 'vpl', 'Hund00774' => 'sun', 'Hund07682' => 'sun', 'Hund21413' => 'sun', 'Hund23462' => 'sun', 'Hund23463' => 'sun', 'Lalb_Chr03g0027911' => 'lal', 'Lalb_Chr13g0304271' => 'lal', 'Lalb_Chr19g0137471' => 'lal', 'Lalb_Chr22g0350651' => 'lal', 'Lalb_Chr24g0395151' => 'lal', 'Lj1A1231T40' => 'lonja', 'Lj1A221T48' => 'lonja', 'Lj1C924T12' => 'lonja', 'Lj2C993G6' => 'lonja', 'Lj3g0005790' => 'lja', 'Lj3g0015432' => 'lja', 'Lj3g0017722' => 'lja', 'Lj3g0018497' => 'lja', 'Lj4g0025071' => 'lja', 'Lsat_1_v5_gn_1_129680' => 'lsa', 'Lsat_1_v5_gn_2_25321' => 'lsa', 'Lsat_1_v5_gn_2_95461' => 'lsa', 'Lsat_1_v5_gn_4_159620' => 'lsa', 'Lsat_1_v5_gn_6_41301' => 'lsa', 'Lsat_1_v5_gn_6_74660' => 'lsa', 'Lsat_1_v5_gn_7_11520' => 'lsa', 'Lsat_1_v5_gn_9_67680' => 'lsa', 'Manes.04G008300' => 'mes', 'Manes.04G008400' => 'mes', 'Manes.04G026500' => 'mes', 'Manes.10G135300' => 'mes', 'Manes.11G157300' => 'mes', 'Manes.12G074000' => 'mes', 'Manes.16G006200' => 'mes', 'Manes.17G026400' => 'mes', 'Mapoly0024s0086' => 'mpo', 'Mapoly0024s0087' => 'mpo', 'Mapoly0071s0057' => 'mpo', 'Mapoly0204s0012' => 'mpo', 'MBI04_g37681_MAGBIO' => 'mbi', 'MBI05_g17779_MAGBIO' => 'mbi', 'MBI12_g31184_MAGBIO' => 'mbi', 'MBI17_g11083_MAGBIO' => 'mbi', 'MBI18_g03883_MAGBIO' => 'mbi', 'MBI18_g28940_MAGBIO' => 'mbi', 'MCO01G690' => 'mco', 'MD03G1109900' => 'mdo', 'MD03G1134800' => 'mdo', 'MD05G1348000' => 'mdo', 'MD10G1322400' => 'mdo', 'MD11G1123300' => 'mdo', 'MD11G1157600' => 'mdo', 'Medtr2g084875' => 'mtr', 'Medtr2g088130' => 'mtr', 'Medtr4g055310' => 'mtr', 'Medtr4g061070' => 'mtr', 'Medtr4g132250' => 'mtr', 'MELO3C004795.2' => 'cme', 'MELO3C004797.2' => 'cme', 'MELO3C007396.2' => 'cme', 'MELO3C019277.2' => 'cme', 'MELO3C021449.2' => 'cme', 'MELO3C025736.2' => 'cme', 'Migut.D02175' => 'egut', 'Migut.H01573' => 'egut', 'Migut.M01327' => 'egut', 'Migut.N02513' => 'egut', 'MSTRG.14638' => 'ama', 'MSTRG.18632' => 'ama', 'MSTRG.7203' => 'ama', 'Nitab4.5_0000533g0140' => 'nta', 'Nitab4.5_0000888g0150' => 'nta', 'Nitab4.5_0001453g0040' => 'nta', 'Nitab4.5_0002827g0090' => 'nta', 'Nitab4.5_0003082g0040' => 'nta', 'Nitab4.5_0007799g0040' => 'nta', 'Nitab4.5_0008983g0010' => 'nta', 'Nitab4.5_0009017g0020' => 'nta', 'Nn1g02132' => 'nnu', 'Nn1g03492' => 'nnu', 'Nn1g03493' => 'nnu', 'Nn1g03494' => 'nnu', 'Nn1g07164' => 'nnu', 'Nn1g07291' => 'nnu', 'Nn2g10655' => 'nnu', 'Nn2g11652' => 'nnu', 'Nn2g14008' => 'nnu', 'Nn3g17476' => 'nnu', 'Nn3g17477' => 'nnu', 'Nn4g22370' => 'nnu', 'Nn4g25255' => 'nnu', 'Nn5g27755' => 'nnu', 'Nn6g34260' => 'nnu', 'Nn6g35041' => 'nnu', 'Oeu005924.1' => 'oeu', 'Oeu008383.1' => 'oeu', 'Oeu014928.1' => 'oeu', 'Oeu019889.1' => 'oeu', 'Oeu022271.1' => 'oeu', 'Oeu025271.1' => 'oeu', 'Oeu036302.1' => 'oeu', 'Oeu044100.1' => 'oeu', 'Os01g0528300' => 'osa', 'Os03g0286200' => 'osa', 'Os04g0406600' => 'osa', 'Os07g0512000' => 'osa', 'Os07g0694600' => 'osa', 'Os08g0411000' => 'osa', 'Os09g0565700' => 'osa', 'Os09g0566050' => 'osa', 'Os10g0523700' => 'osa', 'Peaxi162Scf00002g00514' => 'pax', 'Peaxi162Scf00047g01817' => 'pax', 'Peaxi162Scf00114g00001' => 'pax', 'Peaxi162Scf00147g00613' => 'pax', 'Peaxi162Scf00389g00425' => 'pax', 'PGR042G1139' => 'pgr', 'PGR042G3273' => 'pgr', 'PGR102G2180' => 'pgr', 'PGR119G0234' => 'pgr', 'PGR119G0668' => 'pgr', 'PGSC0003DMG400007122' => 'stu', 'PGSC0003DMG400016478' => 'stu', 'PGSC0003DMG400025374' => 'stu', 'PGSC0003DMG400026536' => 'stu', 'Phvul.003G079600' => 'pvu', 'Phvul.005G115600' => 'pvu', 'Phvul.005G127100' => 'pvu', 'Phvul.006G149500' => 'pvu', 'Phvul.006G149600' => 'pvu', 'Phvul.011G071800' => 'pvu', 'Phvul.011G090400' => 'pvu', 'Potri.004G013400' => 'ptr', 'Potri.004G188100' => 'ptr', 'Potri.008G195500' => 'ptr', 'Potri.009G148800' => 'ptr', 'Potri.011G004700' => 'ptr', 'Pp3c17_22810' => 'ppa', 'Pp3c18_4480' => 'ppa', 'Pp3c19_13030' => 'ppa', 'Pp3c1_33620' => 'ppa', 'Pp3c2_9380' => 'ppa', 'PRCOL_00001023' => 'pco', 'Prupe.3G216300' => 'ppe', 'Prupe.4G019500' => 'ppe', 'Prupe.6G092500' => 'ppe', 'Prupe.6G119200' => 'ppe', 'Psat0s1945g0080' => 'psa', 'Psat0s4167g0040' => 'psa', 'Psat1g185800' => 'psa', 'Psat4g006440' => 'psa', 'Psat4g006480' => 'psa', 'Psat4g168120' => 'psa', 'Psat5g255680' => 'psa', 'Psat5g261760' => 'psa', 'Psat7g222120' => 'psa', 'PSO063G7252' => 'pso', 'PSO170G4778' => 'pso', 'PSO210G2249' => 'pso', 'PSO339G2411' => 'pso', 'PSO339G2457' => 'pso', 'PSO339G2854' => 'pso', 'PSO339G4288' => 'pso', 'PSO339G4615' => 'pso', 'PSO384G2796' => 'pso', 'PSO384G2940' => 'pso', 'PSO384G4227' => 'pso', 'PSO478G1425' => 'pso', 'PSO541G3863' => 'pso', 'PSO675G0507' => 'pso', 'PSO782G0338' => 'pso', 'PSO832G0644' => 'pso', 'QL01p013664' => 'qlo', 'QL01p036598' => 'qlo', 'QL05p072984' => 'qlo', 'QL08p005768' => 'qlo', 'QL08p032743' => 'qlo', 'QL93p0073_0439' => 'qlo', 'QL93p0073_0444' => 'qlo', 'RcHm_v2.0_Chr5g0002851' => 'rch', 'RcHm_v2.0_Chr5g0055201' => 'rch', 'RcHm_v2.0_Chr5g0061191' => 'rch', 'RcHm_v2.0_Chr7g0203231' => 'rch', 'Rhsim01G0208100' => 'rsi', 'Rhsim01G0208200' => 'rsi', 'Rhsim02G0106500' => 'rsi', 'Rhsim03G0107900' => 'rsi', 'Rhsim06G0163400' => 'rsi', 'Rhsim13G0105200' => 'rsi', 'Sabra04G0006300' => 'sbr', 'Sabra04G0127000' => 'sbr', 'Sabra08G0148700' => 'sbr', 'Sabra09G0117400' => 'sbr', 'SalBow1G3326' => 'sbo', 'SalBow3G3228' => 'sbo', 'SalBow6G1634' => 'sbo', 'SalBow6G3603' => 'sbo', 'SalBow6G5266' => 'sbo', 'SalBow7G2265' => 'sbo', 'SalBow8G0850' => 'sbo', 'SalBow8G2592' => 'sbo', 'Sc05g0009240' => 'sci', 'Sc12g0002300' => 'sci', 'Sc21g0000100' => 'sci', 'Sc21g0004720' => 'sci', 'Sed0002949' => 'sed', 'Sed0004114' => 'sed', 'Sed0004306' => 'sed', 'Sed0006172' => 'sed', 'Sed0008413' => 'sed', 'Sed0013809' => 'sed', 'Sed0019556' => 'sed', 'SEGI_03570' => 'sgi', 'SEGI_07859' => 'sgi', 'SEGI_15042' => 'sgi', 'SEGI_16263' => 'sgi', 'SEGI_16552' => 'sgi', 'SEGI_24331' => 'sgi', 'SEGI_27316' => 'sgi', 'SEGI_29521' => 'sgi', 'SEGI_41342' => 'sgi', 'SGA_v2.0_scaffold27G11617' => 'sas', 'SGA_v2.0_scaffold316G48428' => 'sas', 'SGA_v2.0_scaffold49G18261' => 'sas', 'SGA_v2.0_scaffold7G03831' => 'sas', 'SGA_v2.0_scaffold93G28359' => 'sas', 'SHI02210' => 'shi', 'SHI06028' => 'shi', 'SHI06321' => 'shi', 'SMO111G0012' => 'smo', 'SMO228G0080' => 'smo', 'SMO356G0756' => 'smo', 'Solyc02g080620.3' => 'sly', 'Solyc06g074530.1' => 'sly', 'Solyc11g066890.1' => 'sly', 'Solyc11g072520.3' => 'sly', 'Sopen02g025330' => 'spe', 'Sopen06g031000' => 'spe', 'Sopen09g008240' => 'spe', 'Sopen09g025210' => 'spe', 'Sopen11g026600' => 'spe', 'Sopen11g030170' => 'spe', 'Sp1g10420' => 'spa', 'Sp3g06570' => 'spa', 'Sp4g10660' => 'spa', 'Sp5g16460' => 'spa', 'Sp6g22710' => 'spa', 'TAR365G0112' => 'tar', 'TAR369G0717' => 'tar', 'TAR374G0976' => 'tar', 'TAR623G1128' => 'tar', 'TAR626G1937' => 'tar', 'TAR627G0123' => 'tar', 'TAR628G0305' => 'tar', 'TAR636G1176' => 'tar', 'TAR636G2442' => 'tar', 'THA.LOC104800556' => 'tha', 'THA.LOC104809501' => 'tha', 'THA.LOC104815126' => 'tha', 'THA.LOC104815732' => 'tha', 'THA.LOC104823528' => 'tha', 'Thecc.02G365600' => 'tca', 'Thecc.06G222300' => 'tca', 'Thecc.09G261800' => 'tca', 'Thecc.09G291400' => 'tca', 'Thhalv10003028m.g' => 'esa', 'Thhalv10007886m.g' => 'esa', 'Thhalv10016085m.g' => 'esa', 'Thhalv10016681m.g' => 'esa', 'Thhalv10020951m.g' => 'esa', 'TPR.G15598' => 'tpr', 'TPR.G29305' => 'tpr', 'TPR.G32395' => 'tpr', 'TPR.G36998' => 'tpr', 'TPR.G4227' => 'tpr', 'TWI18G1433' => 'twi', 'TWI31G0755' => 'twi', 'TWI38G0912' => 'twi', 'TWI75G1097' => 'twi', 'TWI75G1619' => 'twi', 'TWI79G1336' => 'twi', 'unitig_0.g943' => 'ugi', 'unitig_0.g944' => 'ugi', 'unitig_22.g6646' => 'ugi', 'unitig_37.g12681' => 'ugi', 'unitig_8.g3290' => 'ugi', 'vmacro03278' => 'vma', 'vmacro12197' => 'vma', 'vmacro14478' => 'vma', 'vmacro15787' => 'vma', 'vmacro15789' => 'vma', 'vmacro15790' => 'vma', 'vmacro15806' => 'vma', 'vmacro22907' => 'vma', 'vmacro22908' => 'vma', 'vmacro22909' => 'vma', 'vmacro23108' => 'vma', 'VMungo0540G0540' => 'vmu', 'VMungo0540G2468' => 'vmu', 'VMungo1080G0390' => 'vmu', 'VMungo1080G1165' => 'vmu', 'VMungo1127G0170' => 'vmu', 'VMungo1127G2099' => 'vmu', 'VMungo1215G3013' => 'vmu', 'Zm00001eb013110' => 'zma', 'Zm00001eb084260' => 'zma', 'Zm00001eb096110' => 'zma', 'Zm00001eb217510' => 'zma', 'Zm00001eb322550' => 'zma', 'Zm00001eb390770' => 'zma', 'Zm00001eb397170' => 'zma', 'Zm00001eb404610' => 'zma', 'Zm00001eb421790' => 'zma' ), 'gf_id' => 'HOM05D000911', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000911' ), 'data_identifier' => 'HOM05D000911', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000911', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27780' => 'bna', 'A03p35380' => 'bna', 'A04p21160' => 'bna', 'A05p40570' => 'bna', 'A06p26900' => 'bna', 'A08p33230' => 'bna', 'A09p65960' => 'bna', 'A10p18290' => 'bna', 'Aa31LG1G12990' => 'aar', 'Aa31LG1G2980' => 'aar', 'Aa31LG4G14320' => 'aar', 'Aa31LG7G11800' => 'aar', 'Aa31sc36G50' => 'aar', 'Aa31sc36G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3721' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5459' => 'aag', 'Actinidia03028' => 'ach', 'Actinidia03753' => 'ach', 'Actinidia04187' => 'ach', 'Actinidia05509' => 'ach', 'Actinidia24180' => 'ach', 'Actinidia26906' => 'ach', 'Actinidia37097' => 'ach', 'Actinidia38249' => 'ach', 'Ah.01g003470' => 'amhyb', 'Ah.01g004580' => 'amhyb', 'Ah.01g014850' => 'amhyb', 'Ah.01g016830' => 'amhyb', 'Ah.14g088000' => 'amhyb', 'AL1G22980' => 'aly', 'AL3G18990' => 'aly', 'AL4G22440' => 'aly', 'AL4G33180' => 'aly', 'AL5G22920' => 'aly', 'AL6G33660' => 'aly', 'AL8G20720' => 'aly', 'Aqoxy1G00935' => 'aox', 'Aqoxy1G02094' => 'aox', 'Aqoxy2G01239' => 'aox', 'Aqoxy4G01870' => 'aox', 'Aqoxy7G00450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.36ZVTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71EM27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5D6C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH3WRE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3NCM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RIM768' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YB5YRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z36GDV' => 'arhy', 'AT1G08250' => 'ath', 'AT1G11790' => 'ath', 'AT2G27820' => 'ath', 'AT3G07630' => 'ath', 'AT3G44720' => 'ath', 'AT5G22630' => 'ath', 'ATR0693G304' => 'atr', 'ATR0794G109' => 'atr', 'ATR0820G120' => 'atr', 'ATR1159G064' => 'atr', 'Atru.chr10.2239' => 'acertr', 'Atru.chr3.3371' => 'acertr', 'Atru.chr6.3202' => 'acertr', 'AUR62006499' => 'cqu', 'AUR62012718' => 'cqu', 'AUR62021938' => 'cqu', 'AUR62023932' => 'cqu', 'AUR62025034' => 'cqu', 'AUR62025035' => 'cqu', 'AUR62038307' => 'cqu', 'AUR62043466' => 'cqu', 'BcaB02g10748' => 'bca', 'BcaB03g13231' => 'bca', 'BcaB03g14689' => 'bca', 'BcaB05g22716' => 'bca', 'BcaB06g28172' => 'bca', 'BcaB08g36413' => 'bca', 'BcaC01g02186' => 'bca', 'BcaC01g04272' => 'bca', 'BcaC02g08080' => 'bca', 'BcaC02g08227' => 'bca', 'BcaC03g13901' => 'bca', 'BcaC04g19593' => 'bca', 'BcaC04g20874' => 'bca', 'BcaC05g29557' => 'bca', 'BcaC06g35505' => 'bca', 'BcaC07g41954' => 'bca', 'BcaC07g41955' => 'bca', 'BcaC07g41956' => 'bca', 'BcaC07g42519' => 'bca', 'BcaC07g42520' => 'bca', 'BcaC07g42523' => 'bca', 'BcaC07g42524' => 'bca', 'BcaC07g42525' => 'bca', 'BcaC08g47480' => 'bca', 'BcaC08g47481' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00530' => 'bna', 'BolC2t07178H' => 'bol', 'BolC3t16567H' => 'bol', 'BolC4t27234H' => 'bol', 'BolC5t29728H' => 'bol', 'BolC5t34622H' => 'bol', 'BolC6t40321H' => 'bol', 'BolC7t42028H' => 'bol', 'BolC8t49125H' => 'bol', 'BolC8t52538H' => 'bol', 'BolC8t52539H' => 'bol', 'BolC9t56681H' => 'bol', 'BolC9t58266H' => 'bol', 'BolSC21t60294H' => 'bol', 'BraA02t05670Z' => 'bra', 'BraA03t12716Z' => 'bra', 'BraA04t17685Z' => 'bra', 'BraA05t22788Z' => 'bra', 'BraA06t24032Z' => 'bra', 'BraA06t25625Z' => 'bra', 'BraA07t27930Z' => 'bra', 'BraA08t35242Z' => 'bra', 'BraA09t38609Z' => 'bra', 'BraA10t43905Z' => 'bra', 'C02p11060' => 'bna', 'C03p42990' => 'bna', 'C03p67310' => 'bna', 'C04p56990' => 'bna', 'C04p58660' => 'bna', 'C05p09890' => 'bna', 'C05p59680' => 'bna', 'C06p19830' => 'bna', 'C06p53040' => 'bna', 'C07p15230' => 'bna', 'C08p50070' => 'bna', 'C08p50090' => 'bna', 'C09p38330' => 'bna', 'C09p53940' => 'bna', 'CAN.G1014.1' => 'can', 'CAN.G644.30' => 'can', 'CAN.G84.47' => 'can', 'CAN.G919.8' => 'can', 'CANSAT54G0113' => 'cansat', 'CANSAT54G1286' => 'cansat', 'CANSAT64G1020' => 'cansat', 'CARHR008080' => 'chi', 'CARHR008090' => 'chi', 'CARHR012130' => 'chi', 'CARHR038390' => 'chi', 'CARHR082330' => 'chi', 'CARHR120520' => 'chi', 'CARHR151470' => 'chi', 'CARHR190950' => 'chi', 'Carub.0001s0760' => 'cru', 'Carub.0001s1146' => 'cru', 'Carub.0003s0721' => 'cru', 'Carub.0004s0858' => 'cru', 'Carub.0005s1040' => 'cru', 'Carub.0006s2035' => 'cru', 'Carub.0015s0005' => 'cru', 'Ca_01607_v3' => 'car', 'Ca_01677_v3' => 'car', 'Ca_06087_v3' => 'car', 'Ca_19238_v3' => 'car', 'Ca_19373_v3' => 'car', 'Ca_21079_v3' => 'car', 'CBR_g54016' => 'cbr', 'CBR_g54018' => 'cbr', 'CBR_g54020' => 'cbr', 'Cc01_g09780' => 'ccan', 'Cc01_g11680' => 'ccan', 'Cc02_g15610' => 'ccan', 'Cc05_g04350' => 'ccan', 'Cc09_g01580' => 'ccan', 'CDE01G0795' => 'cde', 'CDE02G2024' => 'cde', 'CDE02G2260' => 'cde', 'CDE02G4561' => 'cde', 'CDE05G2733' => 'cde', 'CDE05G3422' => 'cde', 'CDE06G2003' => 'cde', 'CDE08G0576' => 'cde', 'CDE09G0048' => 'cde', 'CDE11G0805' => 'cde', 'Cfa003644' => 'cfa', 'Cfa006290' => 'cfa', 'Cfa010080' => 'cfa', 'Cfa011376' => 'cfa', 'Cfa011576' => 'cfa', 'Cfa011577' => 'cfa', 'Cfa014389' => 'cfa', 'Ciclev10006044m.g' => 'ccl', 'Ciclev10006954m.g' => 'ccl', 'Ciclev10015131m.g' => 'ccl', 'Ciclev10015580m.g' => 'ccl', 'Ciclev10028359m.g' => 'ccl', 'Ciclev10028573m.g' => 'ccl', 'CiPaw.03G159300' => 'cil', 'CiPaw.04G115100' => 'cil', 'CiPaw.09G092800' => 'cil', 'CiPaw.10G071800' => 'cil', 'CiPaw.13G105800' => 'cil', 'CiPaw.13G141000' => 'cil', 'CiPaw.14G103400' => 'cil', 'ClCG01G012700' => 'cla', 'ClCG01G012720' => 'cla', 'ClCG01G021920' => 'cla', 'ClCG02G008870' => 'cla', 'ClCG02G020840' => 'cla', 'ClCG02G021930' => 'cla', 'COL.COLO4_19302' => 'col', 'COL.COLO4_25262' => 'col', 'COL.COLO4_31788' => 'col', 'Cpa.g.c34684' => 'cpa', 'Cpa.g.c36520.1' => 'cpa', 'Cpa.g.c45626' => 'cpa', 'Cpa.g.sc121.17' => 'cpa', 'Cpa.g.sc13.22' => 'cpa', 'Cpa.g.sc87.88' => 'cpa', 'Cre06.g261800' => 'cre', 'CsaV3_1G014500' => 'csa', 'CsaV3_1G014510' => 'csa', 'CsaV3_2G034880' => 'csa', 'CsaV3_6G014760' => 'csa', 'CsaV3_6G021500' => 'csa', 'CsaV3_6G048980' => 'csa', 'CSS0002511' => 'camsi', 'CSS0007556' => 'camsi', 'CSS0008532' => 'camsi', 'CSS0009709' => 'camsi', 'CSS0010486' => 'camsi', 'CSS0016768' => 'camsi', 'CSS0023512' => 'camsi', 'CSS0025341' => 'camsi', 'CSS0027999' => 'camsi', 'CSS0028944' => 'camsi', 'CSS0032292' => 'camsi', 'CSS0032464' => 'camsi', 'CSS0037153' => 'camsi', 'CSS0039256' => 'camsi', 'CSS0048392' => 'camsi', 'CSS0050458' => 'camsi', 'DCAR_004224' => 'dca', 'DCAR_006147' => 'dca', 'DCAR_006465' => 'dca', 'DCAR_008159' => 'dca', 'DCAR_012164' => 'dca', 'DCAR_019764' => 'dca', 'Dinv05418' => 'din', 'Dinv10839' => 'din', 'Dinv12521' => 'din', 'Dinv13900' => 'din', 'Dinv29426' => 'din', 'Duzib150G0263' => 'dzi', 'Duzib168G1178' => 'dzi', 'Duzib168G1924' => 'dzi', 'Duzib170G0299' => 'dzi', 'Duzib170G0813' => 'dzi', 'Duzib235G1128' => 'dzi', 'Duzib248G1060' => 'dzi', 'ECA232G1910' => 'eca', 'ECA233G4621' => 'eca', 'ECA238G1216' => 'eca', 'ECA238G1784' => 'eca', 'ECA248G1242' => 'eca', 'EL10Ac8g20071' => 'bvu', 'EL10Ac9g21086' => 'bvu', 'EL10Ac9g22407' => 'bvu', 'EL10Ac9g22412' => 'bvu', 'Eucgr.A01119' => 'egr', 'Eucgr.E04043' => 'egr', 'Eucgr.J00428' => 'egr', 'Eucgr.J00958' => 'egr', 'FAN11G3091' => 'fan', 'FAN11G3651' => 'fan', 'FAN16G2566' => 'fan', 'FAN21G3155' => 'fan', 'FAN21G3400' => 'fan', 'FAN21G3543' => 'fan', 'FAN25G0234' => 'fan', 'FAN25G1422' => 'fan', 'FAN25G3392' => 'fan', 'FvH4_3g01940' => 'fve', 'FvH4_3g29870' => 'fve', 'FvH4_3g33680' => 'fve', 'Glyma.09G004200' => 'gma', 'Glyma.11G151288' => 'gma', 'Glyma.11G189100' => 'gma', 'Glyma.12G072500' => 'gma', 'Glyma.12G085500' => 'gma', 'Glyma.12G181800' => 'gma', 'Glyma.12G193000' => 'gma', 'Glyma.13G309300' => 'gma', 'Glyma.13G319000' => 'gma', 'Glyma.17G012600' => 'gma', 'Gohir.A06G148600' => 'ghi', 'Gohir.A07G115800' => 'ghi', 'Gohir.A08G003600' => 'ghi', 'Gohir.A09G093300' => 'ghi', 'Gohir.A09G105400' => 'ghi', 'Gohir.A09G105500' => 'ghi', 'Gohir.D06G154600' => 'ghi', 'Gohir.D07G120200' => 'ghi', 'Gohir.D08G013900' => 'ghi', 'Gohir.D09G093100' => 'ghi', 'Gohir.D09G102200' => 'ghi', 'Gohir.D09G102300' => 'ghi', 'Gorai.001G129400' => 'gra', 'Gorai.004G008200' => 'gra', 'Gorai.006G109800' => 'gra', 'Gorai.006G119500' => 'gra', 'Gorai.006G121300' => 'gra', 'Gorai.010G180700' => 'gra', 'GSVIVG01012716001' => 'vvi', 'GSVIVG01025118001' => 'vvi', 'GSVIVG01030439001' => 'vvi', 'GSVIVG01031397001' => 'vvi', 'HanXRQChr01g0004201' => 'han', 'HanXRQChr02g0054941' => 'han', 'HanXRQChr05g0141811' => 'han', 'HanXRQChr07g0197751' => 'han', 'HanXRQChr11g0346691' => 'han', 'HanXRQChr13g0396971' => 'han', 'HanXRQChr14g0432951' => 'han', 'HanXRQChr14g0452001' => 'han', 'HanXRQChr15g0496681' => 'han', 'HanXRQChr17g0557491' => 'han', 'HanXRQChr17g0557501' => 'han', 'Haze_06809' => 'cav', 'Haze_12852' => 'cav', 'Haze_15850' => 'cav', 'Haze_23446' => 'cav', 'Haze_23942' => 'cav', 'Haze_23943' => 'cav', 'Hma1.2p1_0091F.1_g046450' => 'hma', 'Hma1.2p1_0128F.1_g059910' => 'hma', 'Hma1.2p1_0249F.1_g102260' => 'hma', 'Hma1.2p1_0453F.1_g156190' => 'hma', 'Hma1.2p1_0695F.1_g204380' => 'hma', 'Hma1.2p1_0749F.1_g212650' => 'hma', 'Hma1.2p1_2156F.1_g315420' => 'hma', 'Hma1.2p1_2686F.1_g326940' => 'hma', 'HPP92_006428' => 'vpl', 'HPP92_012069' => 'vpl', 'HPP92_014129' => 'vpl', 'HPP92_014133' => 'vpl', 'HPP92_017315' => 'vpl', 'HPP92_026445' => 'vpl', 'HPP92_026446' => 'vpl', 'Hund00774' => 'sun', 'Hund07682' => 'sun', 'Hund21413' => 'sun', 'Hund23462' => 'sun', 'Hund23463' => 'sun', 'Lalb_Chr03g0027911' => 'lal', 'Lalb_Chr13g0304271' => 'lal', 'Lalb_Chr19g0137471' => 'lal', 'Lalb_Chr22g0350651' => 'lal', 'Lalb_Chr24g0395151' => 'lal', 'Lj1A1231T40' => 'lonja', 'Lj1A221T48' => 'lonja', 'Lj1C924T12' => 'lonja', 'Lj2C993G6' => 'lonja', 'Lj3g0005790' => 'lja', 'Lj3g0015432' => 'lja', 'Lj3g0017722' => 'lja', 'Lj3g0018497' => 'lja', 'Lj4g0025071' => 'lja', 'Lsat_1_v5_gn_1_129680' => 'lsa', 'Lsat_1_v5_gn_2_25321' => 'lsa', 'Lsat_1_v5_gn_2_95461' => 'lsa', 'Lsat_1_v5_gn_4_159620' => 'lsa', 'Lsat_1_v5_gn_6_41301' => 'lsa', 'Lsat_1_v5_gn_6_74660' => 'lsa', 'Lsat_1_v5_gn_7_11520' => 'lsa', 'Lsat_1_v5_gn_9_67680' => 'lsa', 'Manes.04G008300' => 'mes', 'Manes.04G008400' => 'mes', 'Manes.04G026500' => 'mes', 'Manes.10G135300' => 'mes', 'Manes.11G157300' => 'mes', 'Manes.12G074000' => 'mes', 'Manes.16G006200' => 'mes', 'Manes.17G026400' => 'mes', 'Mapoly0024s0086' => 'mpo', 'Mapoly0024s0087' => 'mpo', 'Mapoly0071s0057' => 'mpo', 'Mapoly0204s0012' => 'mpo', 'MBI04_g37681_MAGBIO' => 'mbi', 'MBI05_g17779_MAGBIO' => 'mbi', 'MBI12_g31184_MAGBIO' => 'mbi', 'MBI17_g11083_MAGBIO' => 'mbi', 'MBI18_g03883_MAGBIO' => 'mbi', 'MBI18_g28940_MAGBIO' => 'mbi', 'MCO01G690' => 'mco', 'MD03G1109900' => 'mdo', 'MD03G1134800' => 'mdo', 'MD05G1348000' => 'mdo', 'MD10G1322400' => 'mdo', 'MD11G1123300' => 'mdo', 'MD11G1157600' => 'mdo', 'Medtr2g084875' => 'mtr', 'Medtr2g088130' => 'mtr', 'Medtr4g055310' => 'mtr', 'Medtr4g061070' => 'mtr', 'Medtr4g132250' => 'mtr', 'MELO3C004795.2' => 'cme', 'MELO3C004797.2' => 'cme', 'MELO3C007396.2' => 'cme', 'MELO3C019277.2' => 'cme', 'MELO3C021449.2' => 'cme', 'MELO3C025736.2' => 'cme', 'Migut.D02175' => 'egut', 'Migut.H01573' => 'egut', 'Migut.M01327' => 'egut', 'Migut.N02513' => 'egut', 'MSTRG.14638' => 'ama', 'MSTRG.18632' => 'ama', 'MSTRG.7203' => 'ama', 'Nitab4.5_0000533g0140' => 'nta', 'Nitab4.5_0000888g0150' => 'nta', 'Nitab4.5_0001453g0040' => 'nta', 'Nitab4.5_0002827g0090' => 'nta', 'Nitab4.5_0003082g0040' => 'nta', 'Nitab4.5_0007799g0040' => 'nta', 'Nitab4.5_0008983g0010' => 'nta', 'Nitab4.5_0009017g0020' => 'nta', 'Nn1g02132' => 'nnu', 'Nn1g03492' => 'nnu', 'Nn1g03493' => 'nnu', 'Nn1g03494' => 'nnu', 'Nn1g07164' => 'nnu', 'Nn1g07291' => 'nnu', 'Nn2g10655' => 'nnu', 'Nn2g11652' => 'nnu', 'Nn2g14008' => 'nnu', 'Nn3g17476' => 'nnu', 'Nn3g17477' => 'nnu', 'Nn4g22370' => 'nnu', 'Nn4g25255' => 'nnu', 'Nn5g27755' => 'nnu', 'Nn6g34260' => 'nnu', 'Nn6g35041' => 'nnu', 'Oeu005924.1' => 'oeu', 'Oeu008383.1' => 'oeu', 'Oeu014928.1' => 'oeu', 'Oeu019889.1' => 'oeu', 'Oeu022271.1' => 'oeu', 'Oeu025271.1' => 'oeu', 'Oeu036302.1' => 'oeu', 'Oeu044100.1' => 'oeu', 'Os01g0528300' => 'osa', 'Os03g0286200' => 'osa', 'Os04g0406600' => 'osa', 'Os07g0512000' => 'osa', 'Os07g0694600' => 'osa', 'Os08g0411000' => 'osa', 'Os09g0565700' => 'osa', 'Os09g0566050' => 'osa', 'Os10g0523700' => 'osa', 'Peaxi162Scf00002g00514' => 'pax', 'Peaxi162Scf00047g01817' => 'pax', 'Peaxi162Scf00114g00001' => 'pax', 'Peaxi162Scf00147g00613' => 'pax', 'Peaxi162Scf00389g00425' => 'pax', 'PGR042G1139' => 'pgr', 'PGR042G3273' => 'pgr', 'PGR102G2180' => 'pgr', 'PGR119G0234' => 'pgr', 'PGR119G0668' => 'pgr', 'PGSC0003DMG400007122' => 'stu', 'PGSC0003DMG400016478' => 'stu', 'PGSC0003DMG400025374' => 'stu', 'PGSC0003DMG400026536' => 'stu', 'Phvul.003G079600' => 'pvu', 'Phvul.005G115600' => 'pvu', 'Phvul.005G127100' => 'pvu', 'Phvul.006G149500' => 'pvu', 'Phvul.006G149600' => 'pvu', 'Phvul.011G071800' => 'pvu', 'Phvul.011G090400' => 'pvu', 'Potri.004G013400' => 'ptr', 'Potri.004G188100' => 'ptr', 'Potri.008G195500' => 'ptr', 'Potri.009G148800' => 'ptr', 'Potri.011G004700' => 'ptr', 'Pp3c17_22810' => 'ppa', 'Pp3c18_4480' => 'ppa', 'Pp3c19_13030' => 'ppa', 'Pp3c1_33620' => 'ppa', 'Pp3c2_9380' => 'ppa', 'PRCOL_00001023' => 'pco', 'Prupe.3G216300' => 'ppe', 'Prupe.4G019500' => 'ppe', 'Prupe.6G092500' => 'ppe', 'Prupe.6G119200' => 'ppe', 'Psat0s1945g0080' => 'psa', 'Psat0s4167g0040' => 'psa', 'Psat1g185800' => 'psa', 'Psat4g006440' => 'psa', 'Psat4g006480' => 'psa', 'Psat4g168120' => 'psa', 'Psat5g255680' => 'psa', 'Psat5g261760' => 'psa', 'Psat7g222120' => 'psa', 'PSO063G7252' => 'pso', 'PSO170G4778' => 'pso', 'PSO210G2249' => 'pso', 'PSO339G2411' => 'pso', 'PSO339G2457' => 'pso', 'PSO339G2854' => 'pso', 'PSO339G4288' => 'pso', 'PSO339G4615' => 'pso', 'PSO384G2796' => 'pso', 'PSO384G2940' => 'pso', 'PSO384G4227' => 'pso', 'PSO478G1425' => 'pso', 'PSO541G3863' => 'pso', 'PSO675G0507' => 'pso', 'PSO782G0338' => 'pso', 'PSO832G0644' => 'pso', 'QL01p013664' => 'qlo', 'QL01p036598' => 'qlo', 'QL05p072984' => 'qlo', 'QL08p005768' => 'qlo', 'QL08p032743' => 'qlo', 'QL93p0073_0439' => 'qlo', 'QL93p0073_0444' => 'qlo', 'RcHm_v2.0_Chr5g0002851' => 'rch', 'RcHm_v2.0_Chr5g0055201' => 'rch', 'RcHm_v2.0_Chr5g0061191' => 'rch', 'RcHm_v2.0_Chr7g0203231' => 'rch', 'Rhsim01G0208100' => 'rsi', 'Rhsim01G0208200' => 'rsi', 'Rhsim02G0106500' => 'rsi', 'Rhsim03G0107900' => 'rsi', 'Rhsim06G0163400' => 'rsi', 'Rhsim13G0105200' => 'rsi', 'Sabra04G0006300' => 'sbr', 'Sabra04G0127000' => 'sbr', 'Sabra08G0148700' => 'sbr', 'Sabra09G0117400' => 'sbr', 'SalBow1G3326' => 'sbo', 'SalBow3G3228' => 'sbo', 'SalBow6G1634' => 'sbo', 'SalBow6G3603' => 'sbo', 'SalBow6G5266' => 'sbo', 'SalBow7G2265' => 'sbo', 'SalBow8G0850' => 'sbo', 'SalBow8G2592' => 'sbo', 'Sc05g0009240' => 'sci', 'Sc12g0002300' => 'sci', 'Sc21g0000100' => 'sci', 'Sc21g0004720' => 'sci', 'Sed0002949' => 'sed', 'Sed0004114' => 'sed', 'Sed0004306' => 'sed', 'Sed0006172' => 'sed', 'Sed0008413' => 'sed', 'Sed0013809' => 'sed', 'Sed0019556' => 'sed', 'SEGI_03570' => 'sgi', 'SEGI_07859' => 'sgi', 'SEGI_15042' => 'sgi', 'SEGI_16263' => 'sgi', 'SEGI_16552' => 'sgi', 'SEGI_24331' => 'sgi', 'SEGI_27316' => 'sgi', 'SEGI_29521' => 'sgi', 'SEGI_41342' => 'sgi', 'SGA_v2.0_scaffold27G11617' => 'sas', 'SGA_v2.0_scaffold316G48428' => 'sas', 'SGA_v2.0_scaffold49G18261' => 'sas', 'SGA_v2.0_scaffold7G03831' => 'sas', 'SGA_v2.0_scaffold93G28359' => 'sas', 'SHI02210' => 'shi', 'SHI06028' => 'shi', 'SHI06321' => 'shi', 'SMO111G0012' => 'smo', 'SMO228G0080' => 'smo', 'SMO356G0756' => 'smo', 'Solyc02g080620.3' => 'sly', 'Solyc06g074530.1' => 'sly', 'Solyc11g066890.1' => 'sly', 'Solyc11g072520.3' => 'sly', 'Sopen02g025330' => 'spe', 'Sopen06g031000' => 'spe', 'Sopen09g008240' => 'spe', 'Sopen09g025210' => 'spe', 'Sopen11g026600' => 'spe', 'Sopen11g030170' => 'spe', 'Sp1g10420' => 'spa', 'Sp3g06570' => 'spa', 'Sp4g10660' => 'spa', 'Sp5g16460' => 'spa', 'Sp6g22710' => 'spa', 'TAR365G0112' => 'tar', 'TAR369G0717' => 'tar', 'TAR374G0976' => 'tar', 'TAR623G1128' => 'tar', 'TAR626G1937' => 'tar', 'TAR627G0123' => 'tar', 'TAR628G0305' => 'tar', 'TAR636G1176' => 'tar', 'TAR636G2442' => 'tar', 'THA.LOC104800556' => 'tha', 'THA.LOC104809501' => 'tha', 'THA.LOC104815126' => 'tha', 'THA.LOC104815732' => 'tha', 'THA.LOC104823528' => 'tha', 'Thecc.02G365600' => 'tca', 'Thecc.06G222300' => 'tca', 'Thecc.09G261800' => 'tca', 'Thecc.09G291400' => 'tca', 'Thhalv10003028m.g' => 'esa', 'Thhalv10007886m.g' => 'esa', 'Thhalv10016085m.g' => 'esa', 'Thhalv10016681m.g' => 'esa', 'Thhalv10020951m.g' => 'esa', 'TPR.G15598' => 'tpr', 'TPR.G29305' => 'tpr', 'TPR.G32395' => 'tpr', 'TPR.G36998' => 'tpr', 'TPR.G4227' => 'tpr', 'TWI18G1433' => 'twi', 'TWI31G0755' => 'twi', 'TWI38G0912' => 'twi', 'TWI75G1097' => 'twi', 'TWI75G1619' => 'twi', 'TWI79G1336' => 'twi', 'unitig_0.g943' => 'ugi', 'unitig_0.g944' => 'ugi', 'unitig_22.g6646' => 'ugi', 'unitig_37.g12681' => 'ugi', 'unitig_8.g3290' => 'ugi', 'vmacro03278' => 'vma', 'vmacro12197' => 'vma', 'vmacro14478' => 'vma', 'vmacro15787' => 'vma', 'vmacro15789' => 'vma', 'vmacro15790' => 'vma', 'vmacro15806' => 'vma', 'vmacro22907' => 'vma', 'vmacro22908' => 'vma', 'vmacro22909' => 'vma', 'vmacro23108' => 'vma', 'VMungo0540G0540' => 'vmu', 'VMungo0540G2468' => 'vmu', 'VMungo1080G0390' => 'vmu', 'VMungo1080G1165' => 'vmu', 'VMungo1127G0170' => 'vmu', 'VMungo1127G2099' => 'vmu', 'VMungo1215G3013' => 'vmu', 'Zm00001eb013110' => 'zma', 'Zm00001eb084260' => 'zma', 'Zm00001eb096110' => 'zma', 'Zm00001eb217510' => 'zma', 'Zm00001eb322550' => 'zma', 'Zm00001eb390770' => 'zma', 'Zm00001eb397170' => 'zma', 'Zm00001eb404610' => 'zma', 'Zm00001eb421790' => 'zma' ) $gf_id = 'HOM05D000911' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000911' ) $data_identifier = 'HOM05D000911' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 16, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 5, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 6, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 8, 'nnu' => (int) 16, 'oeu' => (int) 8, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 5, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 16, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421790' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000911', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27780' => 'bna', 'A03p35380' => 'bna', 'A04p21160' => 'bna', 'A05p40570' => 'bna', 'A06p26900' => 'bna', 'A08p33230' => 'bna', 'A09p65960' => 'bna', 'A10p18290' => 'bna', 'Aa31LG1G12990' => 'aar', 'Aa31LG1G2980' => 'aar', 'Aa31LG4G14320' => 'aar', 'Aa31LG7G11800' => 'aar', 'Aa31sc36G50' => 'aar', 'Aa31sc36G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3721' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5459' => 'aag', 'Actinidia03028' => 'ach', 'Actinidia03753' => 'ach', 'Actinidia04187' => 'ach', 'Actinidia05509' => 'ach', 'Actinidia24180' => 'ach', 'Actinidia26906' => 'ach', 'Actinidia37097' => 'ach', 'Actinidia38249' => 'ach', 'Ah.01g003470' => 'amhyb', 'Ah.01g004580' => 'amhyb', 'Ah.01g014850' => 'amhyb', 'Ah.01g016830' => 'amhyb', 'Ah.14g088000' => 'amhyb', 'AL1G22980' => 'aly', 'AL3G18990' => 'aly', 'AL4G22440' => 'aly', 'AL4G33180' => 'aly', 'AL5G22920' => 'aly', 'AL6G33660' => 'aly', 'AL8G20720' => 'aly', 'Aqoxy1G00935' => 'aox', 'Aqoxy1G02094' => 'aox', 'Aqoxy2G01239' => 'aox', 'Aqoxy4G01870' => 'aox', 'Aqoxy7G00450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.36ZVTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71EM27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5D6C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH3WRE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3NCM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RIM768' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YB5YRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z36GDV' => 'arhy', 'AT1G08250' => 'ath', 'AT1G11790' => 'ath', 'AT2G27820' => 'ath', 'AT3G07630' => 'ath', 'AT3G44720' => 'ath', 'AT5G22630' => 'ath', 'ATR0693G304' => 'atr', 'ATR0794G109' => 'atr', 'ATR0820G120' => 'atr', 'ATR1159G064' => 'atr', 'Atru.chr10.2239' => 'acertr', 'Atru.chr3.3371' => 'acertr', 'Atru.chr6.3202' => 'acertr', 'AUR62006499' => 'cqu', 'AUR62012718' => 'cqu', 'AUR62021938' => 'cqu', 'AUR62023932' => 'cqu', 'AUR62025034' => 'cqu', 'AUR62025035' => 'cqu', 'AUR62038307' => 'cqu', 'AUR62043466' => 'cqu', 'BcaB02g10748' => 'bca', 'BcaB03g13231' => 'bca', 'BcaB03g14689' => 'bca', 'BcaB05g22716' => 'bca', 'BcaB06g28172' => 'bca', 'BcaB08g36413' => 'bca', 'BcaC01g02186' => 'bca', 'BcaC01g04272' => 'bca', 'BcaC02g08080' => 'bca', 'BcaC02g08227' => 'bca', 'BcaC03g13901' => 'bca', 'BcaC04g19593' => 'bca', 'BcaC04g20874' => 'bca', 'BcaC05g29557' => 'bca', 'BcaC06g35505' => 'bca', 'BcaC07g41954' => 'bca', 'BcaC07g41955' => 'bca', 'BcaC07g41956' => 'bca', 'BcaC07g42519' => 'bca', 'BcaC07g42520' => 'bca', 'BcaC07g42523' => 'bca', 'BcaC07g42524' => 'bca', 'BcaC07g42525' => 'bca', 'BcaC08g47480' => 'bca', 'BcaC08g47481' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00530' => 'bna', 'BolC2t07178H' => 'bol', 'BolC3t16567H' => 'bol', 'BolC4t27234H' => 'bol', 'BolC5t29728H' => 'bol', 'BolC5t34622H' => 'bol', 'BolC6t40321H' => 'bol', 'BolC7t42028H' => 'bol', 'BolC8t49125H' => 'bol', 'BolC8t52538H' => 'bol', 'BolC8t52539H' => 'bol', 'BolC9t56681H' => 'bol', 'BolC9t58266H' => 'bol', 'BolSC21t60294H' => 'bol', 'BraA02t05670Z' => 'bra', 'BraA03t12716Z' => 'bra', 'BraA04t17685Z' => 'bra', 'BraA05t22788Z' => 'bra', 'BraA06t24032Z' => 'bra', 'BraA06t25625Z' => 'bra', 'BraA07t27930Z' => 'bra', 'BraA08t35242Z' => 'bra', 'BraA09t38609Z' => 'bra', 'BraA10t43905Z' => 'bra', 'C02p11060' => 'bna', 'C03p42990' => 'bna', 'C03p67310' => 'bna', 'C04p56990' => 'bna', 'C04p58660' => 'bna', 'C05p09890' => 'bna', 'C05p59680' => 'bna', 'C06p19830' => 'bna', 'C06p53040' => 'bna', 'C07p15230' => 'bna', 'C08p50070' => 'bna', 'C08p50090' => 'bna', 'C09p38330' => 'bna', 'C09p53940' => 'bna', 'CAN.G1014.1' => 'can', 'CAN.G644.30' => 'can', 'CAN.G84.47' => 'can', 'CAN.G919.8' => 'can', 'CANSAT54G0113' => 'cansat', 'CANSAT54G1286' => 'cansat', 'CANSAT64G1020' => 'cansat', 'CARHR008080' => 'chi', 'CARHR008090' => 'chi', 'CARHR012130' => 'chi', 'CARHR038390' => 'chi', 'CARHR082330' => 'chi', 'CARHR120520' => 'chi', 'CARHR151470' => 'chi', 'CARHR190950' => 'chi', 'Carub.0001s0760' => 'cru', 'Carub.0001s1146' => 'cru', 'Carub.0003s0721' => 'cru', 'Carub.0004s0858' => 'cru', 'Carub.0005s1040' => 'cru', 'Carub.0006s2035' => 'cru', 'Carub.0015s0005' => 'cru', 'Ca_01607_v3' => 'car', 'Ca_01677_v3' => 'car', 'Ca_06087_v3' => 'car', 'Ca_19238_v3' => 'car', 'Ca_19373_v3' => 'car', 'Ca_21079_v3' => 'car', 'CBR_g54016' => 'cbr', 'CBR_g54018' => 'cbr', 'CBR_g54020' => 'cbr', 'Cc01_g09780' => 'ccan', 'Cc01_g11680' => 'ccan', 'Cc02_g15610' => 'ccan', 'Cc05_g04350' => 'ccan', 'Cc09_g01580' => 'ccan', 'CDE01G0795' => 'cde', 'CDE02G2024' => 'cde', 'CDE02G2260' => 'cde', 'CDE02G4561' => 'cde', 'CDE05G2733' => 'cde', 'CDE05G3422' => 'cde', 'CDE06G2003' => 'cde', 'CDE08G0576' => 'cde', 'CDE09G0048' => 'cde', 'CDE11G0805' => 'cde', 'Cfa003644' => 'cfa', 'Cfa006290' => 'cfa', 'Cfa010080' => 'cfa', 'Cfa011376' => 'cfa', 'Cfa011576' => 'cfa', 'Cfa011577' => 'cfa', 'Cfa014389' => 'cfa', 'Ciclev10006044m.g' => 'ccl', 'Ciclev10006954m.g' => 'ccl', 'Ciclev10015131m.g' => 'ccl', 'Ciclev10015580m.g' => 'ccl', 'Ciclev10028359m.g' => 'ccl', 'Ciclev10028573m.g' => 'ccl', 'CiPaw.03G159300' => 'cil', 'CiPaw.04G115100' => 'cil', 'CiPaw.09G092800' => 'cil', 'CiPaw.10G071800' => 'cil', 'CiPaw.13G105800' => 'cil', 'CiPaw.13G141000' => 'cil', 'CiPaw.14G103400' => 'cil', 'ClCG01G012700' => 'cla', 'ClCG01G012720' => 'cla', 'ClCG01G021920' => 'cla', 'ClCG02G008870' => 'cla', 'ClCG02G020840' => 'cla', 'ClCG02G021930' => 'cla', 'COL.COLO4_19302' => 'col', 'COL.COLO4_25262' => 'col', 'COL.COLO4_31788' => 'col', 'Cpa.g.c34684' => 'cpa', 'Cpa.g.c36520.1' => 'cpa', 'Cpa.g.c45626' => 'cpa', 'Cpa.g.sc121.17' => 'cpa', 'Cpa.g.sc13.22' => 'cpa', 'Cpa.g.sc87.88' => 'cpa', 'Cre06.g261800' => 'cre', 'CsaV3_1G014500' => 'csa', 'CsaV3_1G014510' => 'csa', 'CsaV3_2G034880' => 'csa', 'CsaV3_6G014760' => 'csa', 'CsaV3_6G021500' => 'csa', 'CsaV3_6G048980' => 'csa', 'CSS0002511' => 'camsi', 'CSS0007556' => 'camsi', 'CSS0008532' => 'camsi', 'CSS0009709' => 'camsi', 'CSS0010486' => 'camsi', 'CSS0016768' => 'camsi', 'CSS0023512' => 'camsi', 'CSS0025341' => 'camsi', 'CSS0027999' => 'camsi', 'CSS0028944' => 'camsi', 'CSS0032292' => 'camsi', 'CSS0032464' => 'camsi', 'CSS0037153' => 'camsi', 'CSS0039256' => 'camsi', 'CSS0048392' => 'camsi', 'CSS0050458' => 'camsi', 'DCAR_004224' => 'dca', 'DCAR_006147' => 'dca', 'DCAR_006465' => 'dca', 'DCAR_008159' => 'dca', 'DCAR_012164' => 'dca', 'DCAR_019764' => 'dca', 'Dinv05418' => 'din', 'Dinv10839' => 'din', 'Dinv12521' => 'din', 'Dinv13900' => 'din', 'Dinv29426' => 'din', 'Duzib150G0263' => 'dzi', 'Duzib168G1178' => 'dzi', 'Duzib168G1924' => 'dzi', 'Duzib170G0299' => 'dzi', 'Duzib170G0813' => 'dzi', 'Duzib235G1128' => 'dzi', 'Duzib248G1060' => 'dzi', 'ECA232G1910' => 'eca', 'ECA233G4621' => 'eca', 'ECA238G1216' => 'eca', 'ECA238G1784' => 'eca', 'ECA248G1242' => 'eca', 'EL10Ac8g20071' => 'bvu', 'EL10Ac9g21086' => 'bvu', 'EL10Ac9g22407' => 'bvu', 'EL10Ac9g22412' => 'bvu', 'Eucgr.A01119' => 'egr', 'Eucgr.E04043' => 'egr', 'Eucgr.J00428' => 'egr', 'Eucgr.J00958' => 'egr', 'FAN11G3091' => 'fan', 'FAN11G3651' => 'fan', 'FAN16G2566' => 'fan', 'FAN21G3155' => 'fan', 'FAN21G3400' => 'fan', 'FAN21G3543' => 'fan', 'FAN25G0234' => 'fan', 'FAN25G1422' => 'fan', 'FAN25G3392' => 'fan', 'FvH4_3g01940' => 'fve', 'FvH4_3g29870' => 'fve', 'FvH4_3g33680' => 'fve', 'Glyma.09G004200' => 'gma', 'Glyma.11G151288' => 'gma', 'Glyma.11G189100' => 'gma', 'Glyma.12G072500' => 'gma', 'Glyma.12G085500' => 'gma', 'Glyma.12G181800' => 'gma', 'Glyma.12G193000' => 'gma', 'Glyma.13G309300' => 'gma', 'Glyma.13G319000' => 'gma', 'Glyma.17G012600' => 'gma', 'Gohir.A06G148600' => 'ghi', 'Gohir.A07G115800' => 'ghi', 'Gohir.A08G003600' => 'ghi', 'Gohir.A09G093300' => 'ghi', 'Gohir.A09G105400' => 'ghi', 'Gohir.A09G105500' => 'ghi', 'Gohir.D06G154600' => 'ghi', 'Gohir.D07G120200' => 'ghi', 'Gohir.D08G013900' => 'ghi', 'Gohir.D09G093100' => 'ghi', 'Gohir.D09G102200' => 'ghi', 'Gohir.D09G102300' => 'ghi', 'Gorai.001G129400' => 'gra', 'Gorai.004G008200' => 'gra', 'Gorai.006G109800' => 'gra', 'Gorai.006G119500' => 'gra', 'Gorai.006G121300' => 'gra', 'Gorai.010G180700' => 'gra', 'GSVIVG01012716001' => 'vvi', 'GSVIVG01025118001' => 'vvi', 'GSVIVG01030439001' => 'vvi', 'GSVIVG01031397001' => 'vvi', 'HanXRQChr01g0004201' => 'han', 'HanXRQChr02g0054941' => 'han', 'HanXRQChr05g0141811' => 'han', 'HanXRQChr07g0197751' => 'han', 'HanXRQChr11g0346691' => 'han', 'HanXRQChr13g0396971' => 'han', 'HanXRQChr14g0432951' => 'han', 'HanXRQChr14g0452001' => 'han', 'HanXRQChr15g0496681' => 'han', 'HanXRQChr17g0557491' => 'han', 'HanXRQChr17g0557501' => 'han', 'Haze_06809' => 'cav', 'Haze_12852' => 'cav', 'Haze_15850' => 'cav', 'Haze_23446' => 'cav', 'Haze_23942' => 'cav', 'Haze_23943' => 'cav', 'Hma1.2p1_0091F.1_g046450' => 'hma', 'Hma1.2p1_0128F.1_g059910' => 'hma', 'Hma1.2p1_0249F.1_g102260' => 'hma', 'Hma1.2p1_0453F.1_g156190' => 'hma', 'Hma1.2p1_0695F.1_g204380' => 'hma', 'Hma1.2p1_0749F.1_g212650' => 'hma', 'Hma1.2p1_2156F.1_g315420' => 'hma', 'Hma1.2p1_2686F.1_g326940' => 'hma', 'HPP92_006428' => 'vpl', 'HPP92_012069' => 'vpl', 'HPP92_014129' => 'vpl', 'HPP92_014133' => 'vpl', 'HPP92_017315' => 'vpl', 'HPP92_026445' => 'vpl', 'HPP92_026446' => 'vpl', 'Hund00774' => 'sun', 'Hund07682' => 'sun', 'Hund21413' => 'sun', 'Hund23462' => 'sun', 'Hund23463' => 'sun', 'Lalb_Chr03g0027911' => 'lal', 'Lalb_Chr13g0304271' => 'lal', 'Lalb_Chr19g0137471' => 'lal', 'Lalb_Chr22g0350651' => 'lal', 'Lalb_Chr24g0395151' => 'lal', 'Lj1A1231T40' => 'lonja', 'Lj1A221T48' => 'lonja', 'Lj1C924T12' => 'lonja', 'Lj2C993G6' => 'lonja', 'Lj3g0005790' => 'lja', 'Lj3g0015432' => 'lja', 'Lj3g0017722' => 'lja', 'Lj3g0018497' => 'lja', 'Lj4g0025071' => 'lja', 'Lsat_1_v5_gn_1_129680' => 'lsa', 'Lsat_1_v5_gn_2_25321' => 'lsa', 'Lsat_1_v5_gn_2_95461' => 'lsa', 'Lsat_1_v5_gn_4_159620' => 'lsa', 'Lsat_1_v5_gn_6_41301' => 'lsa', 'Lsat_1_v5_gn_6_74660' => 'lsa', 'Lsat_1_v5_gn_7_11520' => 'lsa', 'Lsat_1_v5_gn_9_67680' => 'lsa', 'Manes.04G008300' => 'mes', 'Manes.04G008400' => 'mes', 'Manes.04G026500' => 'mes', 'Manes.10G135300' => 'mes', 'Manes.11G157300' => 'mes', 'Manes.12G074000' => 'mes', 'Manes.16G006200' => 'mes', 'Manes.17G026400' => 'mes', 'Mapoly0024s0086' => 'mpo', 'Mapoly0024s0087' => 'mpo', 'Mapoly0071s0057' => 'mpo', 'Mapoly0204s0012' => 'mpo', 'MBI04_g37681_MAGBIO' => 'mbi', 'MBI05_g17779_MAGBIO' => 'mbi', 'MBI12_g31184_MAGBIO' => 'mbi', 'MBI17_g11083_MAGBIO' => 'mbi', 'MBI18_g03883_MAGBIO' => 'mbi', 'MBI18_g28940_MAGBIO' => 'mbi', 'MCO01G690' => 'mco', 'MD03G1109900' => 'mdo', 'MD03G1134800' => 'mdo', 'MD05G1348000' => 'mdo', 'MD10G1322400' => 'mdo', 'MD11G1123300' => 'mdo', 'MD11G1157600' => 'mdo', 'Medtr2g084875' => 'mtr', 'Medtr2g088130' => 'mtr', 'Medtr4g055310' => 'mtr', 'Medtr4g061070' => 'mtr', 'Medtr4g132250' => 'mtr', 'MELO3C004795.2' => 'cme', 'MELO3C004797.2' => 'cme', 'MELO3C007396.2' => 'cme', 'MELO3C019277.2' => 'cme', 'MELO3C021449.2' => 'cme', 'MELO3C025736.2' => 'cme', 'Migut.D02175' => 'egut', 'Migut.H01573' => 'egut', 'Migut.M01327' => 'egut', 'Migut.N02513' => 'egut', 'MSTRG.14638' => 'ama', 'MSTRG.18632' => 'ama', 'MSTRG.7203' => 'ama', 'Nitab4.5_0000533g0140' => 'nta', 'Nitab4.5_0000888g0150' => 'nta', 'Nitab4.5_0001453g0040' => 'nta', 'Nitab4.5_0002827g0090' => 'nta', 'Nitab4.5_0003082g0040' => 'nta', 'Nitab4.5_0007799g0040' => 'nta', 'Nitab4.5_0008983g0010' => 'nta', 'Nitab4.5_0009017g0020' => 'nta', 'Nn1g02132' => 'nnu', 'Nn1g03492' => 'nnu', 'Nn1g03493' => 'nnu', 'Nn1g03494' => 'nnu', 'Nn1g07164' => 'nnu', 'Nn1g07291' => 'nnu', 'Nn2g10655' => 'nnu', 'Nn2g11652' => 'nnu', 'Nn2g14008' => 'nnu', 'Nn3g17476' => 'nnu', 'Nn3g17477' => 'nnu', 'Nn4g22370' => 'nnu', 'Nn4g25255' => 'nnu', 'Nn5g27755' => 'nnu', 'Nn6g34260' => 'nnu', 'Nn6g35041' => 'nnu', 'Oeu005924.1' => 'oeu', 'Oeu008383.1' => 'oeu', 'Oeu014928.1' => 'oeu', 'Oeu019889.1' => 'oeu', 'Oeu022271.1' => 'oeu', 'Oeu025271.1' => 'oeu', 'Oeu036302.1' => 'oeu', 'Oeu044100.1' => 'oeu', 'Os01g0528300' => 'osa', 'Os03g0286200' => 'osa', 'Os04g0406600' => 'osa', 'Os07g0512000' => 'osa', 'Os07g0694600' => 'osa', 'Os08g0411000' => 'osa', 'Os09g0565700' => 'osa', 'Os09g0566050' => 'osa', 'Os10g0523700' => 'osa', 'Peaxi162Scf00002g00514' => 'pax', 'Peaxi162Scf00047g01817' => 'pax', 'Peaxi162Scf00114g00001' => 'pax', 'Peaxi162Scf00147g00613' => 'pax', 'Peaxi162Scf00389g00425' => 'pax', 'PGR042G1139' => 'pgr', 'PGR042G3273' => 'pgr', 'PGR102G2180' => 'pgr', 'PGR119G0234' => 'pgr', 'PGR119G0668' => 'pgr', 'PGSC0003DMG400007122' => 'stu', 'PGSC0003DMG400016478' => 'stu', 'PGSC0003DMG400025374' => 'stu', 'PGSC0003DMG400026536' => 'stu', 'Phvul.003G079600' => 'pvu', 'Phvul.005G115600' => 'pvu', 'Phvul.005G127100' => 'pvu', 'Phvul.006G149500' => 'pvu', 'Phvul.006G149600' => 'pvu', 'Phvul.011G071800' => 'pvu', 'Phvul.011G090400' => 'pvu', 'Potri.004G013400' => 'ptr', 'Potri.004G188100' => 'ptr', 'Potri.008G195500' => 'ptr', 'Potri.009G148800' => 'ptr', 'Potri.011G004700' => 'ptr', 'Pp3c17_22810' => 'ppa', 'Pp3c18_4480' => 'ppa', 'Pp3c19_13030' => 'ppa', 'Pp3c1_33620' => 'ppa', 'Pp3c2_9380' => 'ppa', 'PRCOL_00001023' => 'pco', 'Prupe.3G216300' => 'ppe', 'Prupe.4G019500' => 'ppe', 'Prupe.6G092500' => 'ppe', 'Prupe.6G119200' => 'ppe', 'Psat0s1945g0080' => 'psa', 'Psat0s4167g0040' => 'psa', 'Psat1g185800' => 'psa', 'Psat4g006440' => 'psa', 'Psat4g006480' => 'psa', 'Psat4g168120' => 'psa', 'Psat5g255680' => 'psa', 'Psat5g261760' => 'psa', 'Psat7g222120' => 'psa', 'PSO063G7252' => 'pso', 'PSO170G4778' => 'pso', 'PSO210G2249' => 'pso', 'PSO339G2411' => 'pso', 'PSO339G2457' => 'pso', 'PSO339G2854' => 'pso', 'PSO339G4288' => 'pso', 'PSO339G4615' => 'pso', 'PSO384G2796' => 'pso', 'PSO384G2940' => 'pso', 'PSO384G4227' => 'pso', 'PSO478G1425' => 'pso', 'PSO541G3863' => 'pso', 'PSO675G0507' => 'pso', 'PSO782G0338' => 'pso', 'PSO832G0644' => 'pso', 'QL01p013664' => 'qlo', 'QL01p036598' => 'qlo', 'QL05p072984' => 'qlo', 'QL08p005768' => 'qlo', 'QL08p032743' => 'qlo', 'QL93p0073_0439' => 'qlo', 'QL93p0073_0444' => 'qlo', 'RcHm_v2.0_Chr5g0002851' => 'rch', 'RcHm_v2.0_Chr5g0055201' => 'rch', 'RcHm_v2.0_Chr5g0061191' => 'rch', 'RcHm_v2.0_Chr7g0203231' => 'rch', 'Rhsim01G0208100' => 'rsi', 'Rhsim01G0208200' => 'rsi', 'Rhsim02G0106500' => 'rsi', 'Rhsim03G0107900' => 'rsi', 'Rhsim06G0163400' => 'rsi', 'Rhsim13G0105200' => 'rsi', 'Sabra04G0006300' => 'sbr', 'Sabra04G0127000' => 'sbr', 'Sabra08G0148700' => 'sbr', 'Sabra09G0117400' => 'sbr', 'SalBow1G3326' => 'sbo', 'SalBow3G3228' => 'sbo', 'SalBow6G1634' => 'sbo', 'SalBow6G3603' => 'sbo', 'SalBow6G5266' => 'sbo', 'SalBow7G2265' => 'sbo', 'SalBow8G0850' => 'sbo', 'SalBow8G2592' => 'sbo', 'Sc05g0009240' => 'sci', 'Sc12g0002300' => 'sci', 'Sc21g0000100' => 'sci', 'Sc21g0004720' => 'sci', 'Sed0002949' => 'sed', 'Sed0004114' => 'sed', 'Sed0004306' => 'sed', 'Sed0006172' => 'sed', 'Sed0008413' => 'sed', 'Sed0013809' => 'sed', 'Sed0019556' => 'sed', 'SEGI_03570' => 'sgi', 'SEGI_07859' => 'sgi', 'SEGI_15042' => 'sgi', 'SEGI_16263' => 'sgi', 'SEGI_16552' => 'sgi', 'SEGI_24331' => 'sgi', 'SEGI_27316' => 'sgi', 'SEGI_29521' => 'sgi', 'SEGI_41342' => 'sgi', 'SGA_v2.0_scaffold27G11617' => 'sas', 'SGA_v2.0_scaffold316G48428' => 'sas', 'SGA_v2.0_scaffold49G18261' => 'sas', 'SGA_v2.0_scaffold7G03831' => 'sas', 'SGA_v2.0_scaffold93G28359' => 'sas', 'SHI02210' => 'shi', 'SHI06028' => 'shi', 'SHI06321' => 'shi', 'SMO111G0012' => 'smo', 'SMO228G0080' => 'smo', 'SMO356G0756' => 'smo', 'Solyc02g080620.3' => 'sly', 'Solyc06g074530.1' => 'sly', 'Solyc11g066890.1' => 'sly', 'Solyc11g072520.3' => 'sly', 'Sopen02g025330' => 'spe', 'Sopen06g031000' => 'spe', 'Sopen09g008240' => 'spe', 'Sopen09g025210' => 'spe', 'Sopen11g026600' => 'spe', 'Sopen11g030170' => 'spe', 'Sp1g10420' => 'spa', 'Sp3g06570' => 'spa', 'Sp4g10660' => 'spa', 'Sp5g16460' => 'spa', 'Sp6g22710' => 'spa', 'TAR365G0112' => 'tar', 'TAR369G0717' => 'tar', 'TAR374G0976' => 'tar', 'TAR623G1128' => 'tar', 'TAR626G1937' => 'tar', 'TAR627G0123' => 'tar', 'TAR628G0305' => 'tar', 'TAR636G1176' => 'tar', 'TAR636G2442' => 'tar', 'THA.LOC104800556' => 'tha', 'THA.LOC104809501' => 'tha', 'THA.LOC104815126' => 'tha', 'THA.LOC104815732' => 'tha', 'THA.LOC104823528' => 'tha', 'Thecc.02G365600' => 'tca', 'Thecc.06G222300' => 'tca', 'Thecc.09G261800' => 'tca', 'Thecc.09G291400' => 'tca', 'Thhalv10003028m.g' => 'esa', 'Thhalv10007886m.g' => 'esa', 'Thhalv10016085m.g' => 'esa', 'Thhalv10016681m.g' => 'esa', 'Thhalv10020951m.g' => 'esa', 'TPR.G15598' => 'tpr', 'TPR.G29305' => 'tpr', 'TPR.G32395' => 'tpr', 'TPR.G36998' => 'tpr', 'TPR.G4227' => 'tpr', 'TWI18G1433' => 'twi', 'TWI31G0755' => 'twi', 'TWI38G0912' => 'twi', 'TWI75G1097' => 'twi', 'TWI75G1619' => 'twi', 'TWI79G1336' => 'twi', 'unitig_0.g943' => 'ugi', 'unitig_0.g944' => 'ugi', 'unitig_22.g6646' => 'ugi', 'unitig_37.g12681' => 'ugi', 'unitig_8.g3290' => 'ugi', 'vmacro03278' => 'vma', 'vmacro12197' => 'vma', 'vmacro14478' => 'vma', 'vmacro15787' => 'vma', 'vmacro15789' => 'vma', 'vmacro15790' => 'vma', 'vmacro15806' => 'vma', 'vmacro22907' => 'vma', 'vmacro22908' => 'vma', 'vmacro22909' => 'vma', 'vmacro23108' => 'vma', 'VMungo0540G0540' => 'vmu', 'VMungo0540G2468' => 'vmu', 'VMungo1080G0390' => 'vmu', 'VMungo1080G1165' => 'vmu', 'VMungo1127G0170' => 'vmu', 'VMungo1127G2099' => 'vmu', 'VMungo1215G3013' => 'vmu', 'Zm00001eb013110' => 'zma', 'Zm00001eb084260' => 'zma', 'Zm00001eb096110' => 'zma', 'Zm00001eb217510' => 'zma', 'Zm00001eb322550' => 'zma', 'Zm00001eb390770' => 'zma', 'Zm00001eb397170' => 'zma', 'Zm00001eb404610' => 'zma', 'Zm00001eb421790' => 'zma' ), 'gf_id' => 'HOM05D000911', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000911' ), 'data_identifier' => 'HOM05D000911', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000911', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27780' => 'bna', 'A03p35380' => 'bna', 'A04p21160' => 'bna', 'A05p40570' => 'bna', 'A06p26900' => 'bna', 'A08p33230' => 'bna', 'A09p65960' => 'bna', 'A10p18290' => 'bna', 'Aa31LG1G12990' => 'aar', 'Aa31LG1G2980' => 'aar', 'Aa31LG4G14320' => 'aar', 'Aa31LG7G11800' => 'aar', 'Aa31sc36G50' => 'aar', 'Aa31sc36G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3721' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5459' => 'aag', 'Actinidia03028' => 'ach', 'Actinidia03753' => 'ach', 'Actinidia04187' => 'ach', 'Actinidia05509' => 'ach', 'Actinidia24180' => 'ach', 'Actinidia26906' => 'ach', 'Actinidia37097' => 'ach', 'Actinidia38249' => 'ach', 'Ah.01g003470' => 'amhyb', 'Ah.01g004580' => 'amhyb', 'Ah.01g014850' => 'amhyb', 'Ah.01g016830' => 'amhyb', 'Ah.14g088000' => 'amhyb', 'AL1G22980' => 'aly', 'AL3G18990' => 'aly', 'AL4G22440' => 'aly', 'AL4G33180' => 'aly', 'AL5G22920' => 'aly', 'AL6G33660' => 'aly', 'AL8G20720' => 'aly', 'Aqoxy1G00935' => 'aox', 'Aqoxy1G02094' => 'aox', 'Aqoxy2G01239' => 'aox', 'Aqoxy4G01870' => 'aox', 'Aqoxy7G00450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.36ZVTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71EM27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5D6C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH3WRE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3NCM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RIM768' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YB5YRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z36GDV' => 'arhy', 'AT1G08250' => 'ath', 'AT1G11790' => 'ath', 'AT2G27820' => 'ath', 'AT3G07630' => 'ath', 'AT3G44720' => 'ath', 'AT5G22630' => 'ath', 'ATR0693G304' => 'atr', 'ATR0794G109' => 'atr', 'ATR0820G120' => 'atr', 'ATR1159G064' => 'atr', 'Atru.chr10.2239' => 'acertr', 'Atru.chr3.3371' => 'acertr', 'Atru.chr6.3202' => 'acertr', 'AUR62006499' => 'cqu', 'AUR62012718' => 'cqu', 'AUR62021938' => 'cqu', 'AUR62023932' => 'cqu', 'AUR62025034' => 'cqu', 'AUR62025035' => 'cqu', 'AUR62038307' => 'cqu', 'AUR62043466' => 'cqu', 'BcaB02g10748' => 'bca', 'BcaB03g13231' => 'bca', 'BcaB03g14689' => 'bca', 'BcaB05g22716' => 'bca', 'BcaB06g28172' => 'bca', 'BcaB08g36413' => 'bca', 'BcaC01g02186' => 'bca', 'BcaC01g04272' => 'bca', 'BcaC02g08080' => 'bca', 'BcaC02g08227' => 'bca', 'BcaC03g13901' => 'bca', 'BcaC04g19593' => 'bca', 'BcaC04g20874' => 'bca', 'BcaC05g29557' => 'bca', 'BcaC06g35505' => 'bca', 'BcaC07g41954' => 'bca', 'BcaC07g41955' => 'bca', 'BcaC07g41956' => 'bca', 'BcaC07g42519' => 'bca', 'BcaC07g42520' => 'bca', 'BcaC07g42523' => 'bca', 'BcaC07g42524' => 'bca', 'BcaC07g42525' => 'bca', 'BcaC08g47480' => 'bca', 'BcaC08g47481' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00530' => 'bna', 'BolC2t07178H' => 'bol', 'BolC3t16567H' => 'bol', 'BolC4t27234H' => 'bol', 'BolC5t29728H' => 'bol', 'BolC5t34622H' => 'bol', 'BolC6t40321H' => 'bol', 'BolC7t42028H' => 'bol', 'BolC8t49125H' => 'bol', 'BolC8t52538H' => 'bol', 'BolC8t52539H' => 'bol', 'BolC9t56681H' => 'bol', 'BolC9t58266H' => 'bol', 'BolSC21t60294H' => 'bol', 'BraA02t05670Z' => 'bra', 'BraA03t12716Z' => 'bra', 'BraA04t17685Z' => 'bra', 'BraA05t22788Z' => 'bra', 'BraA06t24032Z' => 'bra', 'BraA06t25625Z' => 'bra', 'BraA07t27930Z' => 'bra', 'BraA08t35242Z' => 'bra', 'BraA09t38609Z' => 'bra', 'BraA10t43905Z' => 'bra', 'C02p11060' => 'bna', 'C03p42990' => 'bna', 'C03p67310' => 'bna', 'C04p56990' => 'bna', 'C04p58660' => 'bna', 'C05p09890' => 'bna', 'C05p59680' => 'bna', 'C06p19830' => 'bna', 'C06p53040' => 'bna', 'C07p15230' => 'bna', 'C08p50070' => 'bna', 'C08p50090' => 'bna', 'C09p38330' => 'bna', 'C09p53940' => 'bna', 'CAN.G1014.1' => 'can', 'CAN.G644.30' => 'can', 'CAN.G84.47' => 'can', 'CAN.G919.8' => 'can', 'CANSAT54G0113' => 'cansat', 'CANSAT54G1286' => 'cansat', 'CANSAT64G1020' => 'cansat', 'CARHR008080' => 'chi', 'CARHR008090' => 'chi', 'CARHR012130' => 'chi', 'CARHR038390' => 'chi', 'CARHR082330' => 'chi', 'CARHR120520' => 'chi', 'CARHR151470' => 'chi', 'CARHR190950' => 'chi', 'Carub.0001s0760' => 'cru', 'Carub.0001s1146' => 'cru', 'Carub.0003s0721' => 'cru', 'Carub.0004s0858' => 'cru', 'Carub.0005s1040' => 'cru', 'Carub.0006s2035' => 'cru', 'Carub.0015s0005' => 'cru', 'Ca_01607_v3' => 'car', 'Ca_01677_v3' => 'car', 'Ca_06087_v3' => 'car', 'Ca_19238_v3' => 'car', 'Ca_19373_v3' => 'car', 'Ca_21079_v3' => 'car', 'CBR_g54016' => 'cbr', 'CBR_g54018' => 'cbr', 'CBR_g54020' => 'cbr', 'Cc01_g09780' => 'ccan', 'Cc01_g11680' => 'ccan', 'Cc02_g15610' => 'ccan', 'Cc05_g04350' => 'ccan', 'Cc09_g01580' => 'ccan', 'CDE01G0795' => 'cde', 'CDE02G2024' => 'cde', 'CDE02G2260' => 'cde', 'CDE02G4561' => 'cde', 'CDE05G2733' => 'cde', 'CDE05G3422' => 'cde', 'CDE06G2003' => 'cde', 'CDE08G0576' => 'cde', 'CDE09G0048' => 'cde', 'CDE11G0805' => 'cde', 'Cfa003644' => 'cfa', 'Cfa006290' => 'cfa', 'Cfa010080' => 'cfa', 'Cfa011376' => 'cfa', 'Cfa011576' => 'cfa', 'Cfa011577' => 'cfa', 'Cfa014389' => 'cfa', 'Ciclev10006044m.g' => 'ccl', 'Ciclev10006954m.g' => 'ccl', 'Ciclev10015131m.g' => 'ccl', 'Ciclev10015580m.g' => 'ccl', 'Ciclev10028359m.g' => 'ccl', 'Ciclev10028573m.g' => 'ccl', 'CiPaw.03G159300' => 'cil', 'CiPaw.04G115100' => 'cil', 'CiPaw.09G092800' => 'cil', 'CiPaw.10G071800' => 'cil', 'CiPaw.13G105800' => 'cil', 'CiPaw.13G141000' => 'cil', 'CiPaw.14G103400' => 'cil', 'ClCG01G012700' => 'cla', 'ClCG01G012720' => 'cla', 'ClCG01G021920' => 'cla', 'ClCG02G008870' => 'cla', 'ClCG02G020840' => 'cla', 'ClCG02G021930' => 'cla', 'COL.COLO4_19302' => 'col', 'COL.COLO4_25262' => 'col', 'COL.COLO4_31788' => 'col', 'Cpa.g.c34684' => 'cpa', 'Cpa.g.c36520.1' => 'cpa', 'Cpa.g.c45626' => 'cpa', 'Cpa.g.sc121.17' => 'cpa', 'Cpa.g.sc13.22' => 'cpa', 'Cpa.g.sc87.88' => 'cpa', 'Cre06.g261800' => 'cre', 'CsaV3_1G014500' => 'csa', 'CsaV3_1G014510' => 'csa', 'CsaV3_2G034880' => 'csa', 'CsaV3_6G014760' => 'csa', 'CsaV3_6G021500' => 'csa', 'CsaV3_6G048980' => 'csa', 'CSS0002511' => 'camsi', 'CSS0007556' => 'camsi', 'CSS0008532' => 'camsi', 'CSS0009709' => 'camsi', 'CSS0010486' => 'camsi', 'CSS0016768' => 'camsi', 'CSS0023512' => 'camsi', 'CSS0025341' => 'camsi', 'CSS0027999' => 'camsi', 'CSS0028944' => 'camsi', 'CSS0032292' => 'camsi', 'CSS0032464' => 'camsi', 'CSS0037153' => 'camsi', 'CSS0039256' => 'camsi', 'CSS0048392' => 'camsi', 'CSS0050458' => 'camsi', 'DCAR_004224' => 'dca', 'DCAR_006147' => 'dca', 'DCAR_006465' => 'dca', 'DCAR_008159' => 'dca', 'DCAR_012164' => 'dca', 'DCAR_019764' => 'dca', 'Dinv05418' => 'din', 'Dinv10839' => 'din', 'Dinv12521' => 'din', 'Dinv13900' => 'din', 'Dinv29426' => 'din', 'Duzib150G0263' => 'dzi', 'Duzib168G1178' => 'dzi', 'Duzib168G1924' => 'dzi', 'Duzib170G0299' => 'dzi', 'Duzib170G0813' => 'dzi', 'Duzib235G1128' => 'dzi', 'Duzib248G1060' => 'dzi', 'ECA232G1910' => 'eca', 'ECA233G4621' => 'eca', 'ECA238G1216' => 'eca', 'ECA238G1784' => 'eca', 'ECA248G1242' => 'eca', 'EL10Ac8g20071' => 'bvu', 'EL10Ac9g21086' => 'bvu', 'EL10Ac9g22407' => 'bvu', 'EL10Ac9g22412' => 'bvu', 'Eucgr.A01119' => 'egr', 'Eucgr.E04043' => 'egr', 'Eucgr.J00428' => 'egr', 'Eucgr.J00958' => 'egr', 'FAN11G3091' => 'fan', 'FAN11G3651' => 'fan', 'FAN16G2566' => 'fan', 'FAN21G3155' => 'fan', 'FAN21G3400' => 'fan', 'FAN21G3543' => 'fan', 'FAN25G0234' => 'fan', 'FAN25G1422' => 'fan', 'FAN25G3392' => 'fan', 'FvH4_3g01940' => 'fve', 'FvH4_3g29870' => 'fve', 'FvH4_3g33680' => 'fve', 'Glyma.09G004200' => 'gma', 'Glyma.11G151288' => 'gma', 'Glyma.11G189100' => 'gma', 'Glyma.12G072500' => 'gma', 'Glyma.12G085500' => 'gma', 'Glyma.12G181800' => 'gma', 'Glyma.12G193000' => 'gma', 'Glyma.13G309300' => 'gma', 'Glyma.13G319000' => 'gma', 'Glyma.17G012600' => 'gma', 'Gohir.A06G148600' => 'ghi', 'Gohir.A07G115800' => 'ghi', 'Gohir.A08G003600' => 'ghi', 'Gohir.A09G093300' => 'ghi', 'Gohir.A09G105400' => 'ghi', 'Gohir.A09G105500' => 'ghi', 'Gohir.D06G154600' => 'ghi', 'Gohir.D07G120200' => 'ghi', 'Gohir.D08G013900' => 'ghi', 'Gohir.D09G093100' => 'ghi', 'Gohir.D09G102200' => 'ghi', 'Gohir.D09G102300' => 'ghi', 'Gorai.001G129400' => 'gra', 'Gorai.004G008200' => 'gra', 'Gorai.006G109800' => 'gra', 'Gorai.006G119500' => 'gra', 'Gorai.006G121300' => 'gra', 'Gorai.010G180700' => 'gra', 'GSVIVG01012716001' => 'vvi', 'GSVIVG01025118001' => 'vvi', 'GSVIVG01030439001' => 'vvi', 'GSVIVG01031397001' => 'vvi', 'HanXRQChr01g0004201' => 'han', 'HanXRQChr02g0054941' => 'han', 'HanXRQChr05g0141811' => 'han', 'HanXRQChr07g0197751' => 'han', 'HanXRQChr11g0346691' => 'han', 'HanXRQChr13g0396971' => 'han', 'HanXRQChr14g0432951' => 'han', 'HanXRQChr14g0452001' => 'han', 'HanXRQChr15g0496681' => 'han', 'HanXRQChr17g0557491' => 'han', 'HanXRQChr17g0557501' => 'han', 'Haze_06809' => 'cav', 'Haze_12852' => 'cav', 'Haze_15850' => 'cav', 'Haze_23446' => 'cav', 'Haze_23942' => 'cav', 'Haze_23943' => 'cav', 'Hma1.2p1_0091F.1_g046450' => 'hma', 'Hma1.2p1_0128F.1_g059910' => 'hma', 'Hma1.2p1_0249F.1_g102260' => 'hma', 'Hma1.2p1_0453F.1_g156190' => 'hma', 'Hma1.2p1_0695F.1_g204380' => 'hma', 'Hma1.2p1_0749F.1_g212650' => 'hma', 'Hma1.2p1_2156F.1_g315420' => 'hma', 'Hma1.2p1_2686F.1_g326940' => 'hma', 'HPP92_006428' => 'vpl', 'HPP92_012069' => 'vpl', 'HPP92_014129' => 'vpl', 'HPP92_014133' => 'vpl', 'HPP92_017315' => 'vpl', 'HPP92_026445' => 'vpl', 'HPP92_026446' => 'vpl', 'Hund00774' => 'sun', 'Hund07682' => 'sun', 'Hund21413' => 'sun', 'Hund23462' => 'sun', 'Hund23463' => 'sun', 'Lalb_Chr03g0027911' => 'lal', 'Lalb_Chr13g0304271' => 'lal', 'Lalb_Chr19g0137471' => 'lal', 'Lalb_Chr22g0350651' => 'lal', 'Lalb_Chr24g0395151' => 'lal', 'Lj1A1231T40' => 'lonja', 'Lj1A221T48' => 'lonja', 'Lj1C924T12' => 'lonja', 'Lj2C993G6' => 'lonja', 'Lj3g0005790' => 'lja', 'Lj3g0015432' => 'lja', 'Lj3g0017722' => 'lja', 'Lj3g0018497' => 'lja', 'Lj4g0025071' => 'lja', 'Lsat_1_v5_gn_1_129680' => 'lsa', 'Lsat_1_v5_gn_2_25321' => 'lsa', 'Lsat_1_v5_gn_2_95461' => 'lsa', 'Lsat_1_v5_gn_4_159620' => 'lsa', 'Lsat_1_v5_gn_6_41301' => 'lsa', 'Lsat_1_v5_gn_6_74660' => 'lsa', 'Lsat_1_v5_gn_7_11520' => 'lsa', 'Lsat_1_v5_gn_9_67680' => 'lsa', 'Manes.04G008300' => 'mes', 'Manes.04G008400' => 'mes', 'Manes.04G026500' => 'mes', 'Manes.10G135300' => 'mes', 'Manes.11G157300' => 'mes', 'Manes.12G074000' => 'mes', 'Manes.16G006200' => 'mes', 'Manes.17G026400' => 'mes', 'Mapoly0024s0086' => 'mpo', 'Mapoly0024s0087' => 'mpo', 'Mapoly0071s0057' => 'mpo', 'Mapoly0204s0012' => 'mpo', 'MBI04_g37681_MAGBIO' => 'mbi', 'MBI05_g17779_MAGBIO' => 'mbi', 'MBI12_g31184_MAGBIO' => 'mbi', 'MBI17_g11083_MAGBIO' => 'mbi', 'MBI18_g03883_MAGBIO' => 'mbi', 'MBI18_g28940_MAGBIO' => 'mbi', 'MCO01G690' => 'mco', 'MD03G1109900' => 'mdo', 'MD03G1134800' => 'mdo', 'MD05G1348000' => 'mdo', 'MD10G1322400' => 'mdo', 'MD11G1123300' => 'mdo', 'MD11G1157600' => 'mdo', 'Medtr2g084875' => 'mtr', 'Medtr2g088130' => 'mtr', 'Medtr4g055310' => 'mtr', 'Medtr4g061070' => 'mtr', 'Medtr4g132250' => 'mtr', 'MELO3C004795.2' => 'cme', 'MELO3C004797.2' => 'cme', 'MELO3C007396.2' => 'cme', 'MELO3C019277.2' => 'cme', 'MELO3C021449.2' => 'cme', 'MELO3C025736.2' => 'cme', 'Migut.D02175' => 'egut', 'Migut.H01573' => 'egut', 'Migut.M01327' => 'egut', 'Migut.N02513' => 'egut', 'MSTRG.14638' => 'ama', 'MSTRG.18632' => 'ama', 'MSTRG.7203' => 'ama', 'Nitab4.5_0000533g0140' => 'nta', 'Nitab4.5_0000888g0150' => 'nta', 'Nitab4.5_0001453g0040' => 'nta', 'Nitab4.5_0002827g0090' => 'nta', 'Nitab4.5_0003082g0040' => 'nta', 'Nitab4.5_0007799g0040' => 'nta', 'Nitab4.5_0008983g0010' => 'nta', 'Nitab4.5_0009017g0020' => 'nta', 'Nn1g02132' => 'nnu', 'Nn1g03492' => 'nnu', 'Nn1g03493' => 'nnu', 'Nn1g03494' => 'nnu', 'Nn1g07164' => 'nnu', 'Nn1g07291' => 'nnu', 'Nn2g10655' => 'nnu', 'Nn2g11652' => 'nnu', 'Nn2g14008' => 'nnu', 'Nn3g17476' => 'nnu', 'Nn3g17477' => 'nnu', 'Nn4g22370' => 'nnu', 'Nn4g25255' => 'nnu', 'Nn5g27755' => 'nnu', 'Nn6g34260' => 'nnu', 'Nn6g35041' => 'nnu', 'Oeu005924.1' => 'oeu', 'Oeu008383.1' => 'oeu', 'Oeu014928.1' => 'oeu', 'Oeu019889.1' => 'oeu', 'Oeu022271.1' => 'oeu', 'Oeu025271.1' => 'oeu', 'Oeu036302.1' => 'oeu', 'Oeu044100.1' => 'oeu', 'Os01g0528300' => 'osa', 'Os03g0286200' => 'osa', 'Os04g0406600' => 'osa', 'Os07g0512000' => 'osa', 'Os07g0694600' => 'osa', 'Os08g0411000' => 'osa', 'Os09g0565700' => 'osa', 'Os09g0566050' => 'osa', 'Os10g0523700' => 'osa', 'Peaxi162Scf00002g00514' => 'pax', 'Peaxi162Scf00047g01817' => 'pax', 'Peaxi162Scf00114g00001' => 'pax', 'Peaxi162Scf00147g00613' => 'pax', 'Peaxi162Scf00389g00425' => 'pax', 'PGR042G1139' => 'pgr', 'PGR042G3273' => 'pgr', 'PGR102G2180' => 'pgr', 'PGR119G0234' => 'pgr', 'PGR119G0668' => 'pgr', 'PGSC0003DMG400007122' => 'stu', 'PGSC0003DMG400016478' => 'stu', 'PGSC0003DMG400025374' => 'stu', 'PGSC0003DMG400026536' => 'stu', 'Phvul.003G079600' => 'pvu', 'Phvul.005G115600' => 'pvu', 'Phvul.005G127100' => 'pvu', 'Phvul.006G149500' => 'pvu', 'Phvul.006G149600' => 'pvu', 'Phvul.011G071800' => 'pvu', 'Phvul.011G090400' => 'pvu', 'Potri.004G013400' => 'ptr', 'Potri.004G188100' => 'ptr', 'Potri.008G195500' => 'ptr', 'Potri.009G148800' => 'ptr', 'Potri.011G004700' => 'ptr', 'Pp3c17_22810' => 'ppa', 'Pp3c18_4480' => 'ppa', 'Pp3c19_13030' => 'ppa', 'Pp3c1_33620' => 'ppa', 'Pp3c2_9380' => 'ppa', 'PRCOL_00001023' => 'pco', 'Prupe.3G216300' => 'ppe', 'Prupe.4G019500' => 'ppe', 'Prupe.6G092500' => 'ppe', 'Prupe.6G119200' => 'ppe', 'Psat0s1945g0080' => 'psa', 'Psat0s4167g0040' => 'psa', 'Psat1g185800' => 'psa', 'Psat4g006440' => 'psa', 'Psat4g006480' => 'psa', 'Psat4g168120' => 'psa', 'Psat5g255680' => 'psa', 'Psat5g261760' => 'psa', 'Psat7g222120' => 'psa', 'PSO063G7252' => 'pso', 'PSO170G4778' => 'pso', 'PSO210G2249' => 'pso', 'PSO339G2411' => 'pso', 'PSO339G2457' => 'pso', 'PSO339G2854' => 'pso', 'PSO339G4288' => 'pso', 'PSO339G4615' => 'pso', 'PSO384G2796' => 'pso', 'PSO384G2940' => 'pso', 'PSO384G4227' => 'pso', 'PSO478G1425' => 'pso', 'PSO541G3863' => 'pso', 'PSO675G0507' => 'pso', 'PSO782G0338' => 'pso', 'PSO832G0644' => 'pso', 'QL01p013664' => 'qlo', 'QL01p036598' => 'qlo', 'QL05p072984' => 'qlo', 'QL08p005768' => 'qlo', 'QL08p032743' => 'qlo', 'QL93p0073_0439' => 'qlo', 'QL93p0073_0444' => 'qlo', 'RcHm_v2.0_Chr5g0002851' => 'rch', 'RcHm_v2.0_Chr5g0055201' => 'rch', 'RcHm_v2.0_Chr5g0061191' => 'rch', 'RcHm_v2.0_Chr7g0203231' => 'rch', 'Rhsim01G0208100' => 'rsi', 'Rhsim01G0208200' => 'rsi', 'Rhsim02G0106500' => 'rsi', 'Rhsim03G0107900' => 'rsi', 'Rhsim06G0163400' => 'rsi', 'Rhsim13G0105200' => 'rsi', 'Sabra04G0006300' => 'sbr', 'Sabra04G0127000' => 'sbr', 'Sabra08G0148700' => 'sbr', 'Sabra09G0117400' => 'sbr', 'SalBow1G3326' => 'sbo', 'SalBow3G3228' => 'sbo', 'SalBow6G1634' => 'sbo', 'SalBow6G3603' => 'sbo', 'SalBow6G5266' => 'sbo', 'SalBow7G2265' => 'sbo', 'SalBow8G0850' => 'sbo', 'SalBow8G2592' => 'sbo', 'Sc05g0009240' => 'sci', 'Sc12g0002300' => 'sci', 'Sc21g0000100' => 'sci', 'Sc21g0004720' => 'sci', 'Sed0002949' => 'sed', 'Sed0004114' => 'sed', 'Sed0004306' => 'sed', 'Sed0006172' => 'sed', 'Sed0008413' => 'sed', 'Sed0013809' => 'sed', 'Sed0019556' => 'sed', 'SEGI_03570' => 'sgi', 'SEGI_07859' => 'sgi', 'SEGI_15042' => 'sgi', 'SEGI_16263' => 'sgi', 'SEGI_16552' => 'sgi', 'SEGI_24331' => 'sgi', 'SEGI_27316' => 'sgi', 'SEGI_29521' => 'sgi', 'SEGI_41342' => 'sgi', 'SGA_v2.0_scaffold27G11617' => 'sas', 'SGA_v2.0_scaffold316G48428' => 'sas', 'SGA_v2.0_scaffold49G18261' => 'sas', 'SGA_v2.0_scaffold7G03831' => 'sas', 'SGA_v2.0_scaffold93G28359' => 'sas', 'SHI02210' => 'shi', 'SHI06028' => 'shi', 'SHI06321' => 'shi', 'SMO111G0012' => 'smo', 'SMO228G0080' => 'smo', 'SMO356G0756' => 'smo', 'Solyc02g080620.3' => 'sly', 'Solyc06g074530.1' => 'sly', 'Solyc11g066890.1' => 'sly', 'Solyc11g072520.3' => 'sly', 'Sopen02g025330' => 'spe', 'Sopen06g031000' => 'spe', 'Sopen09g008240' => 'spe', 'Sopen09g025210' => 'spe', 'Sopen11g026600' => 'spe', 'Sopen11g030170' => 'spe', 'Sp1g10420' => 'spa', 'Sp3g06570' => 'spa', 'Sp4g10660' => 'spa', 'Sp5g16460' => 'spa', 'Sp6g22710' => 'spa', 'TAR365G0112' => 'tar', 'TAR369G0717' => 'tar', 'TAR374G0976' => 'tar', 'TAR623G1128' => 'tar', 'TAR626G1937' => 'tar', 'TAR627G0123' => 'tar', 'TAR628G0305' => 'tar', 'TAR636G1176' => 'tar', 'TAR636G2442' => 'tar', 'THA.LOC104800556' => 'tha', 'THA.LOC104809501' => 'tha', 'THA.LOC104815126' => 'tha', 'THA.LOC104815732' => 'tha', 'THA.LOC104823528' => 'tha', 'Thecc.02G365600' => 'tca', 'Thecc.06G222300' => 'tca', 'Thecc.09G261800' => 'tca', 'Thecc.09G291400' => 'tca', 'Thhalv10003028m.g' => 'esa', 'Thhalv10007886m.g' => 'esa', 'Thhalv10016085m.g' => 'esa', 'Thhalv10016681m.g' => 'esa', 'Thhalv10020951m.g' => 'esa', 'TPR.G15598' => 'tpr', 'TPR.G29305' => 'tpr', 'TPR.G32395' => 'tpr', 'TPR.G36998' => 'tpr', 'TPR.G4227' => 'tpr', 'TWI18G1433' => 'twi', 'TWI31G0755' => 'twi', 'TWI38G0912' => 'twi', 'TWI75G1097' => 'twi', 'TWI75G1619' => 'twi', 'TWI79G1336' => 'twi', 'unitig_0.g943' => 'ugi', 'unitig_0.g944' => 'ugi', 'unitig_22.g6646' => 'ugi', 'unitig_37.g12681' => 'ugi', 'unitig_8.g3290' => 'ugi', 'vmacro03278' => 'vma', 'vmacro12197' => 'vma', 'vmacro14478' => 'vma', 'vmacro15787' => 'vma', 'vmacro15789' => 'vma', 'vmacro15790' => 'vma', 'vmacro15806' => 'vma', 'vmacro22907' => 'vma', 'vmacro22908' => 'vma', 'vmacro22909' => 'vma', 'vmacro23108' => 'vma', 'VMungo0540G0540' => 'vmu', 'VMungo0540G2468' => 'vmu', 'VMungo1080G0390' => 'vmu', 'VMungo1080G1165' => 'vmu', 'VMungo1127G0170' => 'vmu', 'VMungo1127G2099' => 'vmu', 'VMungo1215G3013' => 'vmu', 'Zm00001eb013110' => 'zma', 'Zm00001eb084260' => 'zma', 'Zm00001eb096110' => 'zma', 'Zm00001eb217510' => 'zma', 'Zm00001eb322550' => 'zma', 'Zm00001eb390770' => 'zma', 'Zm00001eb397170' => 'zma', 'Zm00001eb404610' => 'zma', 'Zm00001eb421790' => 'zma' ) $gf_id = 'HOM05D000911' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000911' ) $data_identifier = 'HOM05D000911' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 16, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 5, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 6, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 8, 'nnu' => (int) 16, 'oeu' => (int) 8, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 5, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 16, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421790' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000911', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27780' => 'bna', 'A03p35380' => 'bna', 'A04p21160' => 'bna', 'A05p40570' => 'bna', 'A06p26900' => 'bna', 'A08p33230' => 'bna', 'A09p65960' => 'bna', 'A10p18290' => 'bna', 'Aa31LG1G12990' => 'aar', 'Aa31LG1G2980' => 'aar', 'Aa31LG4G14320' => 'aar', 'Aa31LG7G11800' => 'aar', 'Aa31sc36G50' => 'aar', 'Aa31sc36G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3721' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5459' => 'aag', 'Actinidia03028' => 'ach', 'Actinidia03753' => 'ach', 'Actinidia04187' => 'ach', 'Actinidia05509' => 'ach', 'Actinidia24180' => 'ach', 'Actinidia26906' => 'ach', 'Actinidia37097' => 'ach', 'Actinidia38249' => 'ach', 'Ah.01g003470' => 'amhyb', 'Ah.01g004580' => 'amhyb', 'Ah.01g014850' => 'amhyb', 'Ah.01g016830' => 'amhyb', 'Ah.14g088000' => 'amhyb', 'AL1G22980' => 'aly', 'AL3G18990' => 'aly', 'AL4G22440' => 'aly', 'AL4G33180' => 'aly', 'AL5G22920' => 'aly', 'AL6G33660' => 'aly', 'AL8G20720' => 'aly', 'Aqoxy1G00935' => 'aox', 'Aqoxy1G02094' => 'aox', 'Aqoxy2G01239' => 'aox', 'Aqoxy4G01870' => 'aox', 'Aqoxy7G00450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.36ZVTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71EM27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5D6C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH3WRE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3NCM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RIM768' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YB5YRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z36GDV' => 'arhy', 'AT1G08250' => 'ath', 'AT1G11790' => 'ath', 'AT2G27820' => 'ath', 'AT3G07630' => 'ath', 'AT3G44720' => 'ath', 'AT5G22630' => 'ath', 'ATR0693G304' => 'atr', 'ATR0794G109' => 'atr', 'ATR0820G120' => 'atr', 'ATR1159G064' => 'atr', 'Atru.chr10.2239' => 'acertr', 'Atru.chr3.3371' => 'acertr', 'Atru.chr6.3202' => 'acertr', 'AUR62006499' => 'cqu', 'AUR62012718' => 'cqu', 'AUR62021938' => 'cqu', 'AUR62023932' => 'cqu', 'AUR62025034' => 'cqu', 'AUR62025035' => 'cqu', 'AUR62038307' => 'cqu', 'AUR62043466' => 'cqu', 'BcaB02g10748' => 'bca', 'BcaB03g13231' => 'bca', 'BcaB03g14689' => 'bca', 'BcaB05g22716' => 'bca', 'BcaB06g28172' => 'bca', 'BcaB08g36413' => 'bca', 'BcaC01g02186' => 'bca', 'BcaC01g04272' => 'bca', 'BcaC02g08080' => 'bca', 'BcaC02g08227' => 'bca', 'BcaC03g13901' => 'bca', 'BcaC04g19593' => 'bca', 'BcaC04g20874' => 'bca', 'BcaC05g29557' => 'bca', 'BcaC06g35505' => 'bca', 'BcaC07g41954' => 'bca', 'BcaC07g41955' => 'bca', 'BcaC07g41956' => 'bca', 'BcaC07g42519' => 'bca', 'BcaC07g42520' => 'bca', 'BcaC07g42523' => 'bca', 'BcaC07g42524' => 'bca', 'BcaC07g42525' => 'bca', 'BcaC08g47480' => 'bca', 'BcaC08g47481' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00530' => 'bna', 'BolC2t07178H' => 'bol', 'BolC3t16567H' => 'bol', 'BolC4t27234H' => 'bol', 'BolC5t29728H' => 'bol', 'BolC5t34622H' => 'bol', 'BolC6t40321H' => 'bol', 'BolC7t42028H' => 'bol', 'BolC8t49125H' => 'bol', 'BolC8t52538H' => 'bol', 'BolC8t52539H' => 'bol', 'BolC9t56681H' => 'bol', 'BolC9t58266H' => 'bol', 'BolSC21t60294H' => 'bol', 'BraA02t05670Z' => 'bra', 'BraA03t12716Z' => 'bra', 'BraA04t17685Z' => 'bra', 'BraA05t22788Z' => 'bra', 'BraA06t24032Z' => 'bra', 'BraA06t25625Z' => 'bra', 'BraA07t27930Z' => 'bra', 'BraA08t35242Z' => 'bra', 'BraA09t38609Z' => 'bra', 'BraA10t43905Z' => 'bra', 'C02p11060' => 'bna', 'C03p42990' => 'bna', 'C03p67310' => 'bna', 'C04p56990' => 'bna', 'C04p58660' => 'bna', 'C05p09890' => 'bna', 'C05p59680' => 'bna', 'C06p19830' => 'bna', 'C06p53040' => 'bna', 'C07p15230' => 'bna', 'C08p50070' => 'bna', 'C08p50090' => 'bna', 'C09p38330' => 'bna', 'C09p53940' => 'bna', 'CAN.G1014.1' => 'can', 'CAN.G644.30' => 'can', 'CAN.G84.47' => 'can', 'CAN.G919.8' => 'can', 'CANSAT54G0113' => 'cansat', 'CANSAT54G1286' => 'cansat', 'CANSAT64G1020' => 'cansat', 'CARHR008080' => 'chi', 'CARHR008090' => 'chi', 'CARHR012130' => 'chi', 'CARHR038390' => 'chi', 'CARHR082330' => 'chi', 'CARHR120520' => 'chi', 'CARHR151470' => 'chi', 'CARHR190950' => 'chi', 'Carub.0001s0760' => 'cru', 'Carub.0001s1146' => 'cru', 'Carub.0003s0721' => 'cru', 'Carub.0004s0858' => 'cru', 'Carub.0005s1040' => 'cru', 'Carub.0006s2035' => 'cru', 'Carub.0015s0005' => 'cru', 'Ca_01607_v3' => 'car', 'Ca_01677_v3' => 'car', 'Ca_06087_v3' => 'car', 'Ca_19238_v3' => 'car', 'Ca_19373_v3' => 'car', 'Ca_21079_v3' => 'car', 'CBR_g54016' => 'cbr', 'CBR_g54018' => 'cbr', 'CBR_g54020' => 'cbr', 'Cc01_g09780' => 'ccan', 'Cc01_g11680' => 'ccan', 'Cc02_g15610' => 'ccan', 'Cc05_g04350' => 'ccan', 'Cc09_g01580' => 'ccan', 'CDE01G0795' => 'cde', 'CDE02G2024' => 'cde', 'CDE02G2260' => 'cde', 'CDE02G4561' => 'cde', 'CDE05G2733' => 'cde', 'CDE05G3422' => 'cde', 'CDE06G2003' => 'cde', 'CDE08G0576' => 'cde', 'CDE09G0048' => 'cde', 'CDE11G0805' => 'cde', 'Cfa003644' => 'cfa', 'Cfa006290' => 'cfa', 'Cfa010080' => 'cfa', 'Cfa011376' => 'cfa', 'Cfa011576' => 'cfa', 'Cfa011577' => 'cfa', 'Cfa014389' => 'cfa', 'Ciclev10006044m.g' => 'ccl', 'Ciclev10006954m.g' => 'ccl', 'Ciclev10015131m.g' => 'ccl', 'Ciclev10015580m.g' => 'ccl', 'Ciclev10028359m.g' => 'ccl', 'Ciclev10028573m.g' => 'ccl', 'CiPaw.03G159300' => 'cil', 'CiPaw.04G115100' => 'cil', 'CiPaw.09G092800' => 'cil', 'CiPaw.10G071800' => 'cil', 'CiPaw.13G105800' => 'cil', 'CiPaw.13G141000' => 'cil', 'CiPaw.14G103400' => 'cil', 'ClCG01G012700' => 'cla', 'ClCG01G012720' => 'cla', 'ClCG01G021920' => 'cla', 'ClCG02G008870' => 'cla', 'ClCG02G020840' => 'cla', 'ClCG02G021930' => 'cla', 'COL.COLO4_19302' => 'col', 'COL.COLO4_25262' => 'col', 'COL.COLO4_31788' => 'col', 'Cpa.g.c34684' => 'cpa', 'Cpa.g.c36520.1' => 'cpa', 'Cpa.g.c45626' => 'cpa', 'Cpa.g.sc121.17' => 'cpa', 'Cpa.g.sc13.22' => 'cpa', 'Cpa.g.sc87.88' => 'cpa', 'Cre06.g261800' => 'cre', 'CsaV3_1G014500' => 'csa', 'CsaV3_1G014510' => 'csa', 'CsaV3_2G034880' => 'csa', 'CsaV3_6G014760' => 'csa', 'CsaV3_6G021500' => 'csa', 'CsaV3_6G048980' => 'csa', 'CSS0002511' => 'camsi', 'CSS0007556' => 'camsi', 'CSS0008532' => 'camsi', 'CSS0009709' => 'camsi', 'CSS0010486' => 'camsi', 'CSS0016768' => 'camsi', 'CSS0023512' => 'camsi', 'CSS0025341' => 'camsi', 'CSS0027999' => 'camsi', 'CSS0028944' => 'camsi', 'CSS0032292' => 'camsi', 'CSS0032464' => 'camsi', 'CSS0037153' => 'camsi', 'CSS0039256' => 'camsi', 'CSS0048392' => 'camsi', 'CSS0050458' => 'camsi', 'DCAR_004224' => 'dca', 'DCAR_006147' => 'dca', 'DCAR_006465' => 'dca', 'DCAR_008159' => 'dca', 'DCAR_012164' => 'dca', 'DCAR_019764' => 'dca', 'Dinv05418' => 'din', 'Dinv10839' => 'din', 'Dinv12521' => 'din', 'Dinv13900' => 'din', 'Dinv29426' => 'din', 'Duzib150G0263' => 'dzi', 'Duzib168G1178' => 'dzi', 'Duzib168G1924' => 'dzi', 'Duzib170G0299' => 'dzi', 'Duzib170G0813' => 'dzi', 'Duzib235G1128' => 'dzi', 'Duzib248G1060' => 'dzi', 'ECA232G1910' => 'eca', 'ECA233G4621' => 'eca', 'ECA238G1216' => 'eca', 'ECA238G1784' => 'eca', 'ECA248G1242' => 'eca', 'EL10Ac8g20071' => 'bvu', 'EL10Ac9g21086' => 'bvu', 'EL10Ac9g22407' => 'bvu', 'EL10Ac9g22412' => 'bvu', 'Eucgr.A01119' => 'egr', 'Eucgr.E04043' => 'egr', 'Eucgr.J00428' => 'egr', 'Eucgr.J00958' => 'egr', 'FAN11G3091' => 'fan', 'FAN11G3651' => 'fan', 'FAN16G2566' => 'fan', 'FAN21G3155' => 'fan', 'FAN21G3400' => 'fan', 'FAN21G3543' => 'fan', 'FAN25G0234' => 'fan', 'FAN25G1422' => 'fan', 'FAN25G3392' => 'fan', 'FvH4_3g01940' => 'fve', 'FvH4_3g29870' => 'fve', 'FvH4_3g33680' => 'fve', 'Glyma.09G004200' => 'gma', 'Glyma.11G151288' => 'gma', 'Glyma.11G189100' => 'gma', 'Glyma.12G072500' => 'gma', 'Glyma.12G085500' => 'gma', 'Glyma.12G181800' => 'gma', 'Glyma.12G193000' => 'gma', 'Glyma.13G309300' => 'gma', 'Glyma.13G319000' => 'gma', 'Glyma.17G012600' => 'gma', 'Gohir.A06G148600' => 'ghi', 'Gohir.A07G115800' => 'ghi', 'Gohir.A08G003600' => 'ghi', 'Gohir.A09G093300' => 'ghi', 'Gohir.A09G105400' => 'ghi', 'Gohir.A09G105500' => 'ghi', 'Gohir.D06G154600' => 'ghi', 'Gohir.D07G120200' => 'ghi', 'Gohir.D08G013900' => 'ghi', 'Gohir.D09G093100' => 'ghi', 'Gohir.D09G102200' => 'ghi', 'Gohir.D09G102300' => 'ghi', 'Gorai.001G129400' => 'gra', 'Gorai.004G008200' => 'gra', 'Gorai.006G109800' => 'gra', 'Gorai.006G119500' => 'gra', 'Gorai.006G121300' => 'gra', 'Gorai.010G180700' => 'gra', 'GSVIVG01012716001' => 'vvi', 'GSVIVG01025118001' => 'vvi', 'GSVIVG01030439001' => 'vvi', 'GSVIVG01031397001' => 'vvi', 'HanXRQChr01g0004201' => 'han', 'HanXRQChr02g0054941' => 'han', 'HanXRQChr05g0141811' => 'han', 'HanXRQChr07g0197751' => 'han', 'HanXRQChr11g0346691' => 'han', 'HanXRQChr13g0396971' => 'han', 'HanXRQChr14g0432951' => 'han', 'HanXRQChr14g0452001' => 'han', 'HanXRQChr15g0496681' => 'han', 'HanXRQChr17g0557491' => 'han', 'HanXRQChr17g0557501' => 'han', 'Haze_06809' => 'cav', 'Haze_12852' => 'cav', 'Haze_15850' => 'cav', 'Haze_23446' => 'cav', 'Haze_23942' => 'cav', 'Haze_23943' => 'cav', 'Hma1.2p1_0091F.1_g046450' => 'hma', 'Hma1.2p1_0128F.1_g059910' => 'hma', 'Hma1.2p1_0249F.1_g102260' => 'hma', 'Hma1.2p1_0453F.1_g156190' => 'hma', 'Hma1.2p1_0695F.1_g204380' => 'hma', 'Hma1.2p1_0749F.1_g212650' => 'hma', 'Hma1.2p1_2156F.1_g315420' => 'hma', 'Hma1.2p1_2686F.1_g326940' => 'hma', 'HPP92_006428' => 'vpl', 'HPP92_012069' => 'vpl', 'HPP92_014129' => 'vpl', 'HPP92_014133' => 'vpl', 'HPP92_017315' => 'vpl', 'HPP92_026445' => 'vpl', 'HPP92_026446' => 'vpl', 'Hund00774' => 'sun', 'Hund07682' => 'sun', 'Hund21413' => 'sun', 'Hund23462' => 'sun', 'Hund23463' => 'sun', 'Lalb_Chr03g0027911' => 'lal', 'Lalb_Chr13g0304271' => 'lal', 'Lalb_Chr19g0137471' => 'lal', 'Lalb_Chr22g0350651' => 'lal', 'Lalb_Chr24g0395151' => 'lal', 'Lj1A1231T40' => 'lonja', 'Lj1A221T48' => 'lonja', 'Lj1C924T12' => 'lonja', 'Lj2C993G6' => 'lonja', 'Lj3g0005790' => 'lja', 'Lj3g0015432' => 'lja', 'Lj3g0017722' => 'lja', 'Lj3g0018497' => 'lja', 'Lj4g0025071' => 'lja', 'Lsat_1_v5_gn_1_129680' => 'lsa', 'Lsat_1_v5_gn_2_25321' => 'lsa', 'Lsat_1_v5_gn_2_95461' => 'lsa', 'Lsat_1_v5_gn_4_159620' => 'lsa', 'Lsat_1_v5_gn_6_41301' => 'lsa', 'Lsat_1_v5_gn_6_74660' => 'lsa', 'Lsat_1_v5_gn_7_11520' => 'lsa', 'Lsat_1_v5_gn_9_67680' => 'lsa', 'Manes.04G008300' => 'mes', 'Manes.04G008400' => 'mes', 'Manes.04G026500' => 'mes', 'Manes.10G135300' => 'mes', 'Manes.11G157300' => 'mes', 'Manes.12G074000' => 'mes', 'Manes.16G006200' => 'mes', 'Manes.17G026400' => 'mes', 'Mapoly0024s0086' => 'mpo', 'Mapoly0024s0087' => 'mpo', 'Mapoly0071s0057' => 'mpo', 'Mapoly0204s0012' => 'mpo', 'MBI04_g37681_MAGBIO' => 'mbi', 'MBI05_g17779_MAGBIO' => 'mbi', 'MBI12_g31184_MAGBIO' => 'mbi', 'MBI17_g11083_MAGBIO' => 'mbi', 'MBI18_g03883_MAGBIO' => 'mbi', 'MBI18_g28940_MAGBIO' => 'mbi', 'MCO01G690' => 'mco', 'MD03G1109900' => 'mdo', 'MD03G1134800' => 'mdo', 'MD05G1348000' => 'mdo', 'MD10G1322400' => 'mdo', 'MD11G1123300' => 'mdo', 'MD11G1157600' => 'mdo', 'Medtr2g084875' => 'mtr', 'Medtr2g088130' => 'mtr', 'Medtr4g055310' => 'mtr', 'Medtr4g061070' => 'mtr', 'Medtr4g132250' => 'mtr', 'MELO3C004795.2' => 'cme', 'MELO3C004797.2' => 'cme', 'MELO3C007396.2' => 'cme', 'MELO3C019277.2' => 'cme', 'MELO3C021449.2' => 'cme', 'MELO3C025736.2' => 'cme', 'Migut.D02175' => 'egut', 'Migut.H01573' => 'egut', 'Migut.M01327' => 'egut', 'Migut.N02513' => 'egut', 'MSTRG.14638' => 'ama', 'MSTRG.18632' => 'ama', 'MSTRG.7203' => 'ama', 'Nitab4.5_0000533g0140' => 'nta', 'Nitab4.5_0000888g0150' => 'nta', 'Nitab4.5_0001453g0040' => 'nta', 'Nitab4.5_0002827g0090' => 'nta', 'Nitab4.5_0003082g0040' => 'nta', 'Nitab4.5_0007799g0040' => 'nta', 'Nitab4.5_0008983g0010' => 'nta', 'Nitab4.5_0009017g0020' => 'nta', 'Nn1g02132' => 'nnu', 'Nn1g03492' => 'nnu', 'Nn1g03493' => 'nnu', 'Nn1g03494' => 'nnu', 'Nn1g07164' => 'nnu', 'Nn1g07291' => 'nnu', 'Nn2g10655' => 'nnu', 'Nn2g11652' => 'nnu', 'Nn2g14008' => 'nnu', 'Nn3g17476' => 'nnu', 'Nn3g17477' => 'nnu', 'Nn4g22370' => 'nnu', 'Nn4g25255' => 'nnu', 'Nn5g27755' => 'nnu', 'Nn6g34260' => 'nnu', 'Nn6g35041' => 'nnu', 'Oeu005924.1' => 'oeu', 'Oeu008383.1' => 'oeu', 'Oeu014928.1' => 'oeu', 'Oeu019889.1' => 'oeu', 'Oeu022271.1' => 'oeu', 'Oeu025271.1' => 'oeu', 'Oeu036302.1' => 'oeu', 'Oeu044100.1' => 'oeu', 'Os01g0528300' => 'osa', 'Os03g0286200' => 'osa', 'Os04g0406600' => 'osa', 'Os07g0512000' => 'osa', 'Os07g0694600' => 'osa', 'Os08g0411000' => 'osa', 'Os09g0565700' => 'osa', 'Os09g0566050' => 'osa', 'Os10g0523700' => 'osa', 'Peaxi162Scf00002g00514' => 'pax', 'Peaxi162Scf00047g01817' => 'pax', 'Peaxi162Scf00114g00001' => 'pax', 'Peaxi162Scf00147g00613' => 'pax', 'Peaxi162Scf00389g00425' => 'pax', 'PGR042G1139' => 'pgr', 'PGR042G3273' => 'pgr', 'PGR102G2180' => 'pgr', 'PGR119G0234' => 'pgr', 'PGR119G0668' => 'pgr', 'PGSC0003DMG400007122' => 'stu', 'PGSC0003DMG400016478' => 'stu', 'PGSC0003DMG400025374' => 'stu', 'PGSC0003DMG400026536' => 'stu', 'Phvul.003G079600' => 'pvu', 'Phvul.005G115600' => 'pvu', 'Phvul.005G127100' => 'pvu', 'Phvul.006G149500' => 'pvu', 'Phvul.006G149600' => 'pvu', 'Phvul.011G071800' => 'pvu', 'Phvul.011G090400' => 'pvu', 'Potri.004G013400' => 'ptr', 'Potri.004G188100' => 'ptr', 'Potri.008G195500' => 'ptr', 'Potri.009G148800' => 'ptr', 'Potri.011G004700' => 'ptr', 'Pp3c17_22810' => 'ppa', 'Pp3c18_4480' => 'ppa', 'Pp3c19_13030' => 'ppa', 'Pp3c1_33620' => 'ppa', 'Pp3c2_9380' => 'ppa', 'PRCOL_00001023' => 'pco', 'Prupe.3G216300' => 'ppe', 'Prupe.4G019500' => 'ppe', 'Prupe.6G092500' => 'ppe', 'Prupe.6G119200' => 'ppe', 'Psat0s1945g0080' => 'psa', 'Psat0s4167g0040' => 'psa', 'Psat1g185800' => 'psa', 'Psat4g006440' => 'psa', 'Psat4g006480' => 'psa', 'Psat4g168120' => 'psa', 'Psat5g255680' => 'psa', 'Psat5g261760' => 'psa', 'Psat7g222120' => 'psa', 'PSO063G7252' => 'pso', 'PSO170G4778' => 'pso', 'PSO210G2249' => 'pso', 'PSO339G2411' => 'pso', 'PSO339G2457' => 'pso', 'PSO339G2854' => 'pso', 'PSO339G4288' => 'pso', 'PSO339G4615' => 'pso', 'PSO384G2796' => 'pso', 'PSO384G2940' => 'pso', 'PSO384G4227' => 'pso', 'PSO478G1425' => 'pso', 'PSO541G3863' => 'pso', 'PSO675G0507' => 'pso', 'PSO782G0338' => 'pso', 'PSO832G0644' => 'pso', 'QL01p013664' => 'qlo', 'QL01p036598' => 'qlo', 'QL05p072984' => 'qlo', 'QL08p005768' => 'qlo', 'QL08p032743' => 'qlo', 'QL93p0073_0439' => 'qlo', 'QL93p0073_0444' => 'qlo', 'RcHm_v2.0_Chr5g0002851' => 'rch', 'RcHm_v2.0_Chr5g0055201' => 'rch', 'RcHm_v2.0_Chr5g0061191' => 'rch', 'RcHm_v2.0_Chr7g0203231' => 'rch', 'Rhsim01G0208100' => 'rsi', 'Rhsim01G0208200' => 'rsi', 'Rhsim02G0106500' => 'rsi', 'Rhsim03G0107900' => 'rsi', 'Rhsim06G0163400' => 'rsi', 'Rhsim13G0105200' => 'rsi', 'Sabra04G0006300' => 'sbr', 'Sabra04G0127000' => 'sbr', 'Sabra08G0148700' => 'sbr', 'Sabra09G0117400' => 'sbr', 'SalBow1G3326' => 'sbo', 'SalBow3G3228' => 'sbo', 'SalBow6G1634' => 'sbo', 'SalBow6G3603' => 'sbo', 'SalBow6G5266' => 'sbo', 'SalBow7G2265' => 'sbo', 'SalBow8G0850' => 'sbo', 'SalBow8G2592' => 'sbo', 'Sc05g0009240' => 'sci', 'Sc12g0002300' => 'sci', 'Sc21g0000100' => 'sci', 'Sc21g0004720' => 'sci', 'Sed0002949' => 'sed', 'Sed0004114' => 'sed', 'Sed0004306' => 'sed', 'Sed0006172' => 'sed', 'Sed0008413' => 'sed', 'Sed0013809' => 'sed', 'Sed0019556' => 'sed', 'SEGI_03570' => 'sgi', 'SEGI_07859' => 'sgi', 'SEGI_15042' => 'sgi', 'SEGI_16263' => 'sgi', 'SEGI_16552' => 'sgi', 'SEGI_24331' => 'sgi', 'SEGI_27316' => 'sgi', 'SEGI_29521' => 'sgi', 'SEGI_41342' => 'sgi', 'SGA_v2.0_scaffold27G11617' => 'sas', 'SGA_v2.0_scaffold316G48428' => 'sas', 'SGA_v2.0_scaffold49G18261' => 'sas', 'SGA_v2.0_scaffold7G03831' => 'sas', 'SGA_v2.0_scaffold93G28359' => 'sas', 'SHI02210' => 'shi', 'SHI06028' => 'shi', 'SHI06321' => 'shi', 'SMO111G0012' => 'smo', 'SMO228G0080' => 'smo', 'SMO356G0756' => 'smo', 'Solyc02g080620.3' => 'sly', 'Solyc06g074530.1' => 'sly', 'Solyc11g066890.1' => 'sly', 'Solyc11g072520.3' => 'sly', 'Sopen02g025330' => 'spe', 'Sopen06g031000' => 'spe', 'Sopen09g008240' => 'spe', 'Sopen09g025210' => 'spe', 'Sopen11g026600' => 'spe', 'Sopen11g030170' => 'spe', 'Sp1g10420' => 'spa', 'Sp3g06570' => 'spa', 'Sp4g10660' => 'spa', 'Sp5g16460' => 'spa', 'Sp6g22710' => 'spa', 'TAR365G0112' => 'tar', 'TAR369G0717' => 'tar', 'TAR374G0976' => 'tar', 'TAR623G1128' => 'tar', 'TAR626G1937' => 'tar', 'TAR627G0123' => 'tar', 'TAR628G0305' => 'tar', 'TAR636G1176' => 'tar', 'TAR636G2442' => 'tar', 'THA.LOC104800556' => 'tha', 'THA.LOC104809501' => 'tha', 'THA.LOC104815126' => 'tha', 'THA.LOC104815732' => 'tha', 'THA.LOC104823528' => 'tha', 'Thecc.02G365600' => 'tca', 'Thecc.06G222300' => 'tca', 'Thecc.09G261800' => 'tca', 'Thecc.09G291400' => 'tca', 'Thhalv10003028m.g' => 'esa', 'Thhalv10007886m.g' => 'esa', 'Thhalv10016085m.g' => 'esa', 'Thhalv10016681m.g' => 'esa', 'Thhalv10020951m.g' => 'esa', 'TPR.G15598' => 'tpr', 'TPR.G29305' => 'tpr', 'TPR.G32395' => 'tpr', 'TPR.G36998' => 'tpr', 'TPR.G4227' => 'tpr', 'TWI18G1433' => 'twi', 'TWI31G0755' => 'twi', 'TWI38G0912' => 'twi', 'TWI75G1097' => 'twi', 'TWI75G1619' => 'twi', 'TWI79G1336' => 'twi', 'unitig_0.g943' => 'ugi', 'unitig_0.g944' => 'ugi', 'unitig_22.g6646' => 'ugi', 'unitig_37.g12681' => 'ugi', 'unitig_8.g3290' => 'ugi', 'vmacro03278' => 'vma', 'vmacro12197' => 'vma', 'vmacro14478' => 'vma', 'vmacro15787' => 'vma', 'vmacro15789' => 'vma', 'vmacro15790' => 'vma', 'vmacro15806' => 'vma', 'vmacro22907' => 'vma', 'vmacro22908' => 'vma', 'vmacro22909' => 'vma', 'vmacro23108' => 'vma', 'VMungo0540G0540' => 'vmu', 'VMungo0540G2468' => 'vmu', 'VMungo1080G0390' => 'vmu', 'VMungo1080G1165' => 'vmu', 'VMungo1127G0170' => 'vmu', 'VMungo1127G2099' => 'vmu', 'VMungo1215G3013' => 'vmu', 'Zm00001eb013110' => 'zma', 'Zm00001eb084260' => 'zma', 'Zm00001eb096110' => 'zma', 'Zm00001eb217510' => 'zma', 'Zm00001eb322550' => 'zma', 'Zm00001eb390770' => 'zma', 'Zm00001eb397170' => 'zma', 'Zm00001eb404610' => 'zma', 'Zm00001eb421790' => 'zma' ), 'gf_id' => 'HOM05D000911', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000911' ), 'data_identifier' => 'HOM05D000911', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000911', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27780' => 'bna', 'A03p35380' => 'bna', 'A04p21160' => 'bna', 'A05p40570' => 'bna', 'A06p26900' => 'bna', 'A08p33230' => 'bna', 'A09p65960' => 'bna', 'A10p18290' => 'bna', 'Aa31LG1G12990' => 'aar', 'Aa31LG1G2980' => 'aar', 'Aa31LG4G14320' => 'aar', 'Aa31LG7G11800' => 'aar', 'Aa31sc36G50' => 'aar', 'Aa31sc36G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3721' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5459' => 'aag', 'Actinidia03028' => 'ach', 'Actinidia03753' => 'ach', 'Actinidia04187' => 'ach', 'Actinidia05509' => 'ach', 'Actinidia24180' => 'ach', 'Actinidia26906' => 'ach', 'Actinidia37097' => 'ach', 'Actinidia38249' => 'ach', 'Ah.01g003470' => 'amhyb', 'Ah.01g004580' => 'amhyb', 'Ah.01g014850' => 'amhyb', 'Ah.01g016830' => 'amhyb', 'Ah.14g088000' => 'amhyb', 'AL1G22980' => 'aly', 'AL3G18990' => 'aly', 'AL4G22440' => 'aly', 'AL4G33180' => 'aly', 'AL5G22920' => 'aly', 'AL6G33660' => 'aly', 'AL8G20720' => 'aly', 'Aqoxy1G00935' => 'aox', 'Aqoxy1G02094' => 'aox', 'Aqoxy2G01239' => 'aox', 'Aqoxy4G01870' => 'aox', 'Aqoxy7G00450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.36ZVTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71EM27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5D6C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH3WRE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3NCM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RIM768' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YB5YRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z36GDV' => 'arhy', 'AT1G08250' => 'ath', 'AT1G11790' => 'ath', 'AT2G27820' => 'ath', 'AT3G07630' => 'ath', 'AT3G44720' => 'ath', 'AT5G22630' => 'ath', 'ATR0693G304' => 'atr', 'ATR0794G109' => 'atr', 'ATR0820G120' => 'atr', 'ATR1159G064' => 'atr', 'Atru.chr10.2239' => 'acertr', 'Atru.chr3.3371' => 'acertr', 'Atru.chr6.3202' => 'acertr', 'AUR62006499' => 'cqu', 'AUR62012718' => 'cqu', 'AUR62021938' => 'cqu', 'AUR62023932' => 'cqu', 'AUR62025034' => 'cqu', 'AUR62025035' => 'cqu', 'AUR62038307' => 'cqu', 'AUR62043466' => 'cqu', 'BcaB02g10748' => 'bca', 'BcaB03g13231' => 'bca', 'BcaB03g14689' => 'bca', 'BcaB05g22716' => 'bca', 'BcaB06g28172' => 'bca', 'BcaB08g36413' => 'bca', 'BcaC01g02186' => 'bca', 'BcaC01g04272' => 'bca', 'BcaC02g08080' => 'bca', 'BcaC02g08227' => 'bca', 'BcaC03g13901' => 'bca', 'BcaC04g19593' => 'bca', 'BcaC04g20874' => 'bca', 'BcaC05g29557' => 'bca', 'BcaC06g35505' => 'bca', 'BcaC07g41954' => 'bca', 'BcaC07g41955' => 'bca', 'BcaC07g41956' => 'bca', 'BcaC07g42519' => 'bca', 'BcaC07g42520' => 'bca', 'BcaC07g42523' => 'bca', 'BcaC07g42524' => 'bca', 'BcaC07g42525' => 'bca', 'BcaC08g47480' => 'bca', 'BcaC08g47481' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00530' => 'bna', 'BolC2t07178H' => 'bol', 'BolC3t16567H' => 'bol', 'BolC4t27234H' => 'bol', 'BolC5t29728H' => 'bol', 'BolC5t34622H' => 'bol', 'BolC6t40321H' => 'bol', 'BolC7t42028H' => 'bol', 'BolC8t49125H' => 'bol', 'BolC8t52538H' => 'bol', 'BolC8t52539H' => 'bol', 'BolC9t56681H' => 'bol', 'BolC9t58266H' => 'bol', 'BolSC21t60294H' => 'bol', 'BraA02t05670Z' => 'bra', 'BraA03t12716Z' => 'bra', 'BraA04t17685Z' => 'bra', 'BraA05t22788Z' => 'bra', 'BraA06t24032Z' => 'bra', 'BraA06t25625Z' => 'bra', 'BraA07t27930Z' => 'bra', 'BraA08t35242Z' => 'bra', 'BraA09t38609Z' => 'bra', 'BraA10t43905Z' => 'bra', 'C02p11060' => 'bna', 'C03p42990' => 'bna', 'C03p67310' => 'bna', 'C04p56990' => 'bna', 'C04p58660' => 'bna', 'C05p09890' => 'bna', 'C05p59680' => 'bna', 'C06p19830' => 'bna', 'C06p53040' => 'bna', 'C07p15230' => 'bna', 'C08p50070' => 'bna', 'C08p50090' => 'bna', 'C09p38330' => 'bna', 'C09p53940' => 'bna', 'CAN.G1014.1' => 'can', 'CAN.G644.30' => 'can', 'CAN.G84.47' => 'can', 'CAN.G919.8' => 'can', 'CANSAT54G0113' => 'cansat', 'CANSAT54G1286' => 'cansat', 'CANSAT64G1020' => 'cansat', 'CARHR008080' => 'chi', 'CARHR008090' => 'chi', 'CARHR012130' => 'chi', 'CARHR038390' => 'chi', 'CARHR082330' => 'chi', 'CARHR120520' => 'chi', 'CARHR151470' => 'chi', 'CARHR190950' => 'chi', 'Carub.0001s0760' => 'cru', 'Carub.0001s1146' => 'cru', 'Carub.0003s0721' => 'cru', 'Carub.0004s0858' => 'cru', 'Carub.0005s1040' => 'cru', 'Carub.0006s2035' => 'cru', 'Carub.0015s0005' => 'cru', 'Ca_01607_v3' => 'car', 'Ca_01677_v3' => 'car', 'Ca_06087_v3' => 'car', 'Ca_19238_v3' => 'car', 'Ca_19373_v3' => 'car', 'Ca_21079_v3' => 'car', 'CBR_g54016' => 'cbr', 'CBR_g54018' => 'cbr', 'CBR_g54020' => 'cbr', 'Cc01_g09780' => 'ccan', 'Cc01_g11680' => 'ccan', 'Cc02_g15610' => 'ccan', 'Cc05_g04350' => 'ccan', 'Cc09_g01580' => 'ccan', 'CDE01G0795' => 'cde', 'CDE02G2024' => 'cde', 'CDE02G2260' => 'cde', 'CDE02G4561' => 'cde', 'CDE05G2733' => 'cde', 'CDE05G3422' => 'cde', 'CDE06G2003' => 'cde', 'CDE08G0576' => 'cde', 'CDE09G0048' => 'cde', 'CDE11G0805' => 'cde', 'Cfa003644' => 'cfa', 'Cfa006290' => 'cfa', 'Cfa010080' => 'cfa', 'Cfa011376' => 'cfa', 'Cfa011576' => 'cfa', 'Cfa011577' => 'cfa', 'Cfa014389' => 'cfa', 'Ciclev10006044m.g' => 'ccl', 'Ciclev10006954m.g' => 'ccl', 'Ciclev10015131m.g' => 'ccl', 'Ciclev10015580m.g' => 'ccl', 'Ciclev10028359m.g' => 'ccl', 'Ciclev10028573m.g' => 'ccl', 'CiPaw.03G159300' => 'cil', 'CiPaw.04G115100' => 'cil', 'CiPaw.09G092800' => 'cil', 'CiPaw.10G071800' => 'cil', 'CiPaw.13G105800' => 'cil', 'CiPaw.13G141000' => 'cil', 'CiPaw.14G103400' => 'cil', 'ClCG01G012700' => 'cla', 'ClCG01G012720' => 'cla', 'ClCG01G021920' => 'cla', 'ClCG02G008870' => 'cla', 'ClCG02G020840' => 'cla', 'ClCG02G021930' => 'cla', 'COL.COLO4_19302' => 'col', 'COL.COLO4_25262' => 'col', 'COL.COLO4_31788' => 'col', 'Cpa.g.c34684' => 'cpa', 'Cpa.g.c36520.1' => 'cpa', 'Cpa.g.c45626' => 'cpa', 'Cpa.g.sc121.17' => 'cpa', 'Cpa.g.sc13.22' => 'cpa', 'Cpa.g.sc87.88' => 'cpa', 'Cre06.g261800' => 'cre', 'CsaV3_1G014500' => 'csa', 'CsaV3_1G014510' => 'csa', 'CsaV3_2G034880' => 'csa', 'CsaV3_6G014760' => 'csa', 'CsaV3_6G021500' => 'csa', 'CsaV3_6G048980' => 'csa', 'CSS0002511' => 'camsi', 'CSS0007556' => 'camsi', 'CSS0008532' => 'camsi', 'CSS0009709' => 'camsi', 'CSS0010486' => 'camsi', 'CSS0016768' => 'camsi', 'CSS0023512' => 'camsi', 'CSS0025341' => 'camsi', 'CSS0027999' => 'camsi', 'CSS0028944' => 'camsi', 'CSS0032292' => 'camsi', 'CSS0032464' => 'camsi', 'CSS0037153' => 'camsi', 'CSS0039256' => 'camsi', 'CSS0048392' => 'camsi', 'CSS0050458' => 'camsi', 'DCAR_004224' => 'dca', 'DCAR_006147' => 'dca', 'DCAR_006465' => 'dca', 'DCAR_008159' => 'dca', 'DCAR_012164' => 'dca', 'DCAR_019764' => 'dca', 'Dinv05418' => 'din', 'Dinv10839' => 'din', 'Dinv12521' => 'din', 'Dinv13900' => 'din', 'Dinv29426' => 'din', 'Duzib150G0263' => 'dzi', 'Duzib168G1178' => 'dzi', 'Duzib168G1924' => 'dzi', 'Duzib170G0299' => 'dzi', 'Duzib170G0813' => 'dzi', 'Duzib235G1128' => 'dzi', 'Duzib248G1060' => 'dzi', 'ECA232G1910' => 'eca', 'ECA233G4621' => 'eca', 'ECA238G1216' => 'eca', 'ECA238G1784' => 'eca', 'ECA248G1242' => 'eca', 'EL10Ac8g20071' => 'bvu', 'EL10Ac9g21086' => 'bvu', 'EL10Ac9g22407' => 'bvu', 'EL10Ac9g22412' => 'bvu', 'Eucgr.A01119' => 'egr', 'Eucgr.E04043' => 'egr', 'Eucgr.J00428' => 'egr', 'Eucgr.J00958' => 'egr', 'FAN11G3091' => 'fan', 'FAN11G3651' => 'fan', 'FAN16G2566' => 'fan', 'FAN21G3155' => 'fan', 'FAN21G3400' => 'fan', 'FAN21G3543' => 'fan', 'FAN25G0234' => 'fan', 'FAN25G1422' => 'fan', 'FAN25G3392' => 'fan', 'FvH4_3g01940' => 'fve', 'FvH4_3g29870' => 'fve', 'FvH4_3g33680' => 'fve', 'Glyma.09G004200' => 'gma', 'Glyma.11G151288' => 'gma', 'Glyma.11G189100' => 'gma', 'Glyma.12G072500' => 'gma', 'Glyma.12G085500' => 'gma', 'Glyma.12G181800' => 'gma', 'Glyma.12G193000' => 'gma', 'Glyma.13G309300' => 'gma', 'Glyma.13G319000' => 'gma', 'Glyma.17G012600' => 'gma', 'Gohir.A06G148600' => 'ghi', 'Gohir.A07G115800' => 'ghi', 'Gohir.A08G003600' => 'ghi', 'Gohir.A09G093300' => 'ghi', 'Gohir.A09G105400' => 'ghi', 'Gohir.A09G105500' => 'ghi', 'Gohir.D06G154600' => 'ghi', 'Gohir.D07G120200' => 'ghi', 'Gohir.D08G013900' => 'ghi', 'Gohir.D09G093100' => 'ghi', 'Gohir.D09G102200' => 'ghi', 'Gohir.D09G102300' => 'ghi', 'Gorai.001G129400' => 'gra', 'Gorai.004G008200' => 'gra', 'Gorai.006G109800' => 'gra', 'Gorai.006G119500' => 'gra', 'Gorai.006G121300' => 'gra', 'Gorai.010G180700' => 'gra', 'GSVIVG01012716001' => 'vvi', 'GSVIVG01025118001' => 'vvi', 'GSVIVG01030439001' => 'vvi', 'GSVIVG01031397001' => 'vvi', 'HanXRQChr01g0004201' => 'han', 'HanXRQChr02g0054941' => 'han', 'HanXRQChr05g0141811' => 'han', 'HanXRQChr07g0197751' => 'han', 'HanXRQChr11g0346691' => 'han', 'HanXRQChr13g0396971' => 'han', 'HanXRQChr14g0432951' => 'han', 'HanXRQChr14g0452001' => 'han', 'HanXRQChr15g0496681' => 'han', 'HanXRQChr17g0557491' => 'han', 'HanXRQChr17g0557501' => 'han', 'Haze_06809' => 'cav', 'Haze_12852' => 'cav', 'Haze_15850' => 'cav', 'Haze_23446' => 'cav', 'Haze_23942' => 'cav', 'Haze_23943' => 'cav', 'Hma1.2p1_0091F.1_g046450' => 'hma', 'Hma1.2p1_0128F.1_g059910' => 'hma', 'Hma1.2p1_0249F.1_g102260' => 'hma', 'Hma1.2p1_0453F.1_g156190' => 'hma', 'Hma1.2p1_0695F.1_g204380' => 'hma', 'Hma1.2p1_0749F.1_g212650' => 'hma', 'Hma1.2p1_2156F.1_g315420' => 'hma', 'Hma1.2p1_2686F.1_g326940' => 'hma', 'HPP92_006428' => 'vpl', 'HPP92_012069' => 'vpl', 'HPP92_014129' => 'vpl', 'HPP92_014133' => 'vpl', 'HPP92_017315' => 'vpl', 'HPP92_026445' => 'vpl', 'HPP92_026446' => 'vpl', 'Hund00774' => 'sun', 'Hund07682' => 'sun', 'Hund21413' => 'sun', 'Hund23462' => 'sun', 'Hund23463' => 'sun', 'Lalb_Chr03g0027911' => 'lal', 'Lalb_Chr13g0304271' => 'lal', 'Lalb_Chr19g0137471' => 'lal', 'Lalb_Chr22g0350651' => 'lal', 'Lalb_Chr24g0395151' => 'lal', 'Lj1A1231T40' => 'lonja', 'Lj1A221T48' => 'lonja', 'Lj1C924T12' => 'lonja', 'Lj2C993G6' => 'lonja', 'Lj3g0005790' => 'lja', 'Lj3g0015432' => 'lja', 'Lj3g0017722' => 'lja', 'Lj3g0018497' => 'lja', 'Lj4g0025071' => 'lja', 'Lsat_1_v5_gn_1_129680' => 'lsa', 'Lsat_1_v5_gn_2_25321' => 'lsa', 'Lsat_1_v5_gn_2_95461' => 'lsa', 'Lsat_1_v5_gn_4_159620' => 'lsa', 'Lsat_1_v5_gn_6_41301' => 'lsa', 'Lsat_1_v5_gn_6_74660' => 'lsa', 'Lsat_1_v5_gn_7_11520' => 'lsa', 'Lsat_1_v5_gn_9_67680' => 'lsa', 'Manes.04G008300' => 'mes', 'Manes.04G008400' => 'mes', 'Manes.04G026500' => 'mes', 'Manes.10G135300' => 'mes', 'Manes.11G157300' => 'mes', 'Manes.12G074000' => 'mes', 'Manes.16G006200' => 'mes', 'Manes.17G026400' => 'mes', 'Mapoly0024s0086' => 'mpo', 'Mapoly0024s0087' => 'mpo', 'Mapoly0071s0057' => 'mpo', 'Mapoly0204s0012' => 'mpo', 'MBI04_g37681_MAGBIO' => 'mbi', 'MBI05_g17779_MAGBIO' => 'mbi', 'MBI12_g31184_MAGBIO' => 'mbi', 'MBI17_g11083_MAGBIO' => 'mbi', 'MBI18_g03883_MAGBIO' => 'mbi', 'MBI18_g28940_MAGBIO' => 'mbi', 'MCO01G690' => 'mco', 'MD03G1109900' => 'mdo', 'MD03G1134800' => 'mdo', 'MD05G1348000' => 'mdo', 'MD10G1322400' => 'mdo', 'MD11G1123300' => 'mdo', 'MD11G1157600' => 'mdo', 'Medtr2g084875' => 'mtr', 'Medtr2g088130' => 'mtr', 'Medtr4g055310' => 'mtr', 'Medtr4g061070' => 'mtr', 'Medtr4g132250' => 'mtr', 'MELO3C004795.2' => 'cme', 'MELO3C004797.2' => 'cme', 'MELO3C007396.2' => 'cme', 'MELO3C019277.2' => 'cme', 'MELO3C021449.2' => 'cme', 'MELO3C025736.2' => 'cme', 'Migut.D02175' => 'egut', 'Migut.H01573' => 'egut', 'Migut.M01327' => 'egut', 'Migut.N02513' => 'egut', 'MSTRG.14638' => 'ama', 'MSTRG.18632' => 'ama', 'MSTRG.7203' => 'ama', 'Nitab4.5_0000533g0140' => 'nta', 'Nitab4.5_0000888g0150' => 'nta', 'Nitab4.5_0001453g0040' => 'nta', 'Nitab4.5_0002827g0090' => 'nta', 'Nitab4.5_0003082g0040' => 'nta', 'Nitab4.5_0007799g0040' => 'nta', 'Nitab4.5_0008983g0010' => 'nta', 'Nitab4.5_0009017g0020' => 'nta', 'Nn1g02132' => 'nnu', 'Nn1g03492' => 'nnu', 'Nn1g03493' => 'nnu', 'Nn1g03494' => 'nnu', 'Nn1g07164' => 'nnu', 'Nn1g07291' => 'nnu', 'Nn2g10655' => 'nnu', 'Nn2g11652' => 'nnu', 'Nn2g14008' => 'nnu', 'Nn3g17476' => 'nnu', 'Nn3g17477' => 'nnu', 'Nn4g22370' => 'nnu', 'Nn4g25255' => 'nnu', 'Nn5g27755' => 'nnu', 'Nn6g34260' => 'nnu', 'Nn6g35041' => 'nnu', 'Oeu005924.1' => 'oeu', 'Oeu008383.1' => 'oeu', 'Oeu014928.1' => 'oeu', 'Oeu019889.1' => 'oeu', 'Oeu022271.1' => 'oeu', 'Oeu025271.1' => 'oeu', 'Oeu036302.1' => 'oeu', 'Oeu044100.1' => 'oeu', 'Os01g0528300' => 'osa', 'Os03g0286200' => 'osa', 'Os04g0406600' => 'osa', 'Os07g0512000' => 'osa', 'Os07g0694600' => 'osa', 'Os08g0411000' => 'osa', 'Os09g0565700' => 'osa', 'Os09g0566050' => 'osa', 'Os10g0523700' => 'osa', 'Peaxi162Scf00002g00514' => 'pax', 'Peaxi162Scf00047g01817' => 'pax', 'Peaxi162Scf00114g00001' => 'pax', 'Peaxi162Scf00147g00613' => 'pax', 'Peaxi162Scf00389g00425' => 'pax', 'PGR042G1139' => 'pgr', 'PGR042G3273' => 'pgr', 'PGR102G2180' => 'pgr', 'PGR119G0234' => 'pgr', 'PGR119G0668' => 'pgr', 'PGSC0003DMG400007122' => 'stu', 'PGSC0003DMG400016478' => 'stu', 'PGSC0003DMG400025374' => 'stu', 'PGSC0003DMG400026536' => 'stu', 'Phvul.003G079600' => 'pvu', 'Phvul.005G115600' => 'pvu', 'Phvul.005G127100' => 'pvu', 'Phvul.006G149500' => 'pvu', 'Phvul.006G149600' => 'pvu', 'Phvul.011G071800' => 'pvu', 'Phvul.011G090400' => 'pvu', 'Potri.004G013400' => 'ptr', 'Potri.004G188100' => 'ptr', 'Potri.008G195500' => 'ptr', 'Potri.009G148800' => 'ptr', 'Potri.011G004700' => 'ptr', 'Pp3c17_22810' => 'ppa', 'Pp3c18_4480' => 'ppa', 'Pp3c19_13030' => 'ppa', 'Pp3c1_33620' => 'ppa', 'Pp3c2_9380' => 'ppa', 'PRCOL_00001023' => 'pco', 'Prupe.3G216300' => 'ppe', 'Prupe.4G019500' => 'ppe', 'Prupe.6G092500' => 'ppe', 'Prupe.6G119200' => 'ppe', 'Psat0s1945g0080' => 'psa', 'Psat0s4167g0040' => 'psa', 'Psat1g185800' => 'psa', 'Psat4g006440' => 'psa', 'Psat4g006480' => 'psa', 'Psat4g168120' => 'psa', 'Psat5g255680' => 'psa', 'Psat5g261760' => 'psa', 'Psat7g222120' => 'psa', 'PSO063G7252' => 'pso', 'PSO170G4778' => 'pso', 'PSO210G2249' => 'pso', 'PSO339G2411' => 'pso', 'PSO339G2457' => 'pso', 'PSO339G2854' => 'pso', 'PSO339G4288' => 'pso', 'PSO339G4615' => 'pso', 'PSO384G2796' => 'pso', 'PSO384G2940' => 'pso', 'PSO384G4227' => 'pso', 'PSO478G1425' => 'pso', 'PSO541G3863' => 'pso', 'PSO675G0507' => 'pso', 'PSO782G0338' => 'pso', 'PSO832G0644' => 'pso', 'QL01p013664' => 'qlo', 'QL01p036598' => 'qlo', 'QL05p072984' => 'qlo', 'QL08p005768' => 'qlo', 'QL08p032743' => 'qlo', 'QL93p0073_0439' => 'qlo', 'QL93p0073_0444' => 'qlo', 'RcHm_v2.0_Chr5g0002851' => 'rch', 'RcHm_v2.0_Chr5g0055201' => 'rch', 'RcHm_v2.0_Chr5g0061191' => 'rch', 'RcHm_v2.0_Chr7g0203231' => 'rch', 'Rhsim01G0208100' => 'rsi', 'Rhsim01G0208200' => 'rsi', 'Rhsim02G0106500' => 'rsi', 'Rhsim03G0107900' => 'rsi', 'Rhsim06G0163400' => 'rsi', 'Rhsim13G0105200' => 'rsi', 'Sabra04G0006300' => 'sbr', 'Sabra04G0127000' => 'sbr', 'Sabra08G0148700' => 'sbr', 'Sabra09G0117400' => 'sbr', 'SalBow1G3326' => 'sbo', 'SalBow3G3228' => 'sbo', 'SalBow6G1634' => 'sbo', 'SalBow6G3603' => 'sbo', 'SalBow6G5266' => 'sbo', 'SalBow7G2265' => 'sbo', 'SalBow8G0850' => 'sbo', 'SalBow8G2592' => 'sbo', 'Sc05g0009240' => 'sci', 'Sc12g0002300' => 'sci', 'Sc21g0000100' => 'sci', 'Sc21g0004720' => 'sci', 'Sed0002949' => 'sed', 'Sed0004114' => 'sed', 'Sed0004306' => 'sed', 'Sed0006172' => 'sed', 'Sed0008413' => 'sed', 'Sed0013809' => 'sed', 'Sed0019556' => 'sed', 'SEGI_03570' => 'sgi', 'SEGI_07859' => 'sgi', 'SEGI_15042' => 'sgi', 'SEGI_16263' => 'sgi', 'SEGI_16552' => 'sgi', 'SEGI_24331' => 'sgi', 'SEGI_27316' => 'sgi', 'SEGI_29521' => 'sgi', 'SEGI_41342' => 'sgi', 'SGA_v2.0_scaffold27G11617' => 'sas', 'SGA_v2.0_scaffold316G48428' => 'sas', 'SGA_v2.0_scaffold49G18261' => 'sas', 'SGA_v2.0_scaffold7G03831' => 'sas', 'SGA_v2.0_scaffold93G28359' => 'sas', 'SHI02210' => 'shi', 'SHI06028' => 'shi', 'SHI06321' => 'shi', 'SMO111G0012' => 'smo', 'SMO228G0080' => 'smo', 'SMO356G0756' => 'smo', 'Solyc02g080620.3' => 'sly', 'Solyc06g074530.1' => 'sly', 'Solyc11g066890.1' => 'sly', 'Solyc11g072520.3' => 'sly', 'Sopen02g025330' => 'spe', 'Sopen06g031000' => 'spe', 'Sopen09g008240' => 'spe', 'Sopen09g025210' => 'spe', 'Sopen11g026600' => 'spe', 'Sopen11g030170' => 'spe', 'Sp1g10420' => 'spa', 'Sp3g06570' => 'spa', 'Sp4g10660' => 'spa', 'Sp5g16460' => 'spa', 'Sp6g22710' => 'spa', 'TAR365G0112' => 'tar', 'TAR369G0717' => 'tar', 'TAR374G0976' => 'tar', 'TAR623G1128' => 'tar', 'TAR626G1937' => 'tar', 'TAR627G0123' => 'tar', 'TAR628G0305' => 'tar', 'TAR636G1176' => 'tar', 'TAR636G2442' => 'tar', 'THA.LOC104800556' => 'tha', 'THA.LOC104809501' => 'tha', 'THA.LOC104815126' => 'tha', 'THA.LOC104815732' => 'tha', 'THA.LOC104823528' => 'tha', 'Thecc.02G365600' => 'tca', 'Thecc.06G222300' => 'tca', 'Thecc.09G261800' => 'tca', 'Thecc.09G291400' => 'tca', 'Thhalv10003028m.g' => 'esa', 'Thhalv10007886m.g' => 'esa', 'Thhalv10016085m.g' => 'esa', 'Thhalv10016681m.g' => 'esa', 'Thhalv10020951m.g' => 'esa', 'TPR.G15598' => 'tpr', 'TPR.G29305' => 'tpr', 'TPR.G32395' => 'tpr', 'TPR.G36998' => 'tpr', 'TPR.G4227' => 'tpr', 'TWI18G1433' => 'twi', 'TWI31G0755' => 'twi', 'TWI38G0912' => 'twi', 'TWI75G1097' => 'twi', 'TWI75G1619' => 'twi', 'TWI79G1336' => 'twi', 'unitig_0.g943' => 'ugi', 'unitig_0.g944' => 'ugi', 'unitig_22.g6646' => 'ugi', 'unitig_37.g12681' => 'ugi', 'unitig_8.g3290' => 'ugi', 'vmacro03278' => 'vma', 'vmacro12197' => 'vma', 'vmacro14478' => 'vma', 'vmacro15787' => 'vma', 'vmacro15789' => 'vma', 'vmacro15790' => 'vma', 'vmacro15806' => 'vma', 'vmacro22907' => 'vma', 'vmacro22908' => 'vma', 'vmacro22909' => 'vma', 'vmacro23108' => 'vma', 'VMungo0540G0540' => 'vmu', 'VMungo0540G2468' => 'vmu', 'VMungo1080G0390' => 'vmu', 'VMungo1080G1165' => 'vmu', 'VMungo1127G0170' => 'vmu', 'VMungo1127G2099' => 'vmu', 'VMungo1215G3013' => 'vmu', 'Zm00001eb013110' => 'zma', 'Zm00001eb084260' => 'zma', 'Zm00001eb096110' => 'zma', 'Zm00001eb217510' => 'zma', 'Zm00001eb322550' => 'zma', 'Zm00001eb390770' => 'zma', 'Zm00001eb397170' => 'zma', 'Zm00001eb404610' => 'zma', 'Zm00001eb421790' => 'zma' ) $gf_id = 'HOM05D000911' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000911' ) $data_identifier = 'HOM05D000911' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 16, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 5, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 6, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 8, 'nnu' => (int) 16, 'oeu' => (int) 8, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 5, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 16, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421790' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000911', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27780' => 'bna', 'A03p35380' => 'bna', 'A04p21160' => 'bna', 'A05p40570' => 'bna', 'A06p26900' => 'bna', 'A08p33230' => 'bna', 'A09p65960' => 'bna', 'A10p18290' => 'bna', 'Aa31LG1G12990' => 'aar', 'Aa31LG1G2980' => 'aar', 'Aa31LG4G14320' => 'aar', 'Aa31LG7G11800' => 'aar', 'Aa31sc36G50' => 'aar', 'Aa31sc36G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3721' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5459' => 'aag', 'Actinidia03028' => 'ach', 'Actinidia03753' => 'ach', 'Actinidia04187' => 'ach', 'Actinidia05509' => 'ach', 'Actinidia24180' => 'ach', 'Actinidia26906' => 'ach', 'Actinidia37097' => 'ach', 'Actinidia38249' => 'ach', 'Ah.01g003470' => 'amhyb', 'Ah.01g004580' => 'amhyb', 'Ah.01g014850' => 'amhyb', 'Ah.01g016830' => 'amhyb', 'Ah.14g088000' => 'amhyb', 'AL1G22980' => 'aly', 'AL3G18990' => 'aly', 'AL4G22440' => 'aly', 'AL4G33180' => 'aly', 'AL5G22920' => 'aly', 'AL6G33660' => 'aly', 'AL8G20720' => 'aly', 'Aqoxy1G00935' => 'aox', 'Aqoxy1G02094' => 'aox', 'Aqoxy2G01239' => 'aox', 'Aqoxy4G01870' => 'aox', 'Aqoxy7G00450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.36ZVTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71EM27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5D6C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH3WRE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3NCM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RIM768' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YB5YRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z36GDV' => 'arhy', 'AT1G08250' => 'ath', 'AT1G11790' => 'ath', 'AT2G27820' => 'ath', 'AT3G07630' => 'ath', 'AT3G44720' => 'ath', 'AT5G22630' => 'ath', 'ATR0693G304' => 'atr', 'ATR0794G109' => 'atr', 'ATR0820G120' => 'atr', 'ATR1159G064' => 'atr', 'Atru.chr10.2239' => 'acertr', 'Atru.chr3.3371' => 'acertr', 'Atru.chr6.3202' => 'acertr', 'AUR62006499' => 'cqu', 'AUR62012718' => 'cqu', 'AUR62021938' => 'cqu', 'AUR62023932' => 'cqu', 'AUR62025034' => 'cqu', 'AUR62025035' => 'cqu', 'AUR62038307' => 'cqu', 'AUR62043466' => 'cqu', 'BcaB02g10748' => 'bca', 'BcaB03g13231' => 'bca', 'BcaB03g14689' => 'bca', 'BcaB05g22716' => 'bca', 'BcaB06g28172' => 'bca', 'BcaB08g36413' => 'bca', 'BcaC01g02186' => 'bca', 'BcaC01g04272' => 'bca', 'BcaC02g08080' => 'bca', 'BcaC02g08227' => 'bca', 'BcaC03g13901' => 'bca', 'BcaC04g19593' => 'bca', 'BcaC04g20874' => 'bca', 'BcaC05g29557' => 'bca', 'BcaC06g35505' => 'bca', 'BcaC07g41954' => 'bca', 'BcaC07g41955' => 'bca', 'BcaC07g41956' => 'bca', 'BcaC07g42519' => 'bca', 'BcaC07g42520' => 'bca', 'BcaC07g42523' => 'bca', 'BcaC07g42524' => 'bca', 'BcaC07g42525' => 'bca', 'BcaC08g47480' => 'bca', 'BcaC08g47481' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00530' => 'bna', 'BolC2t07178H' => 'bol', 'BolC3t16567H' => 'bol', 'BolC4t27234H' => 'bol', 'BolC5t29728H' => 'bol', 'BolC5t34622H' => 'bol', 'BolC6t40321H' => 'bol', 'BolC7t42028H' => 'bol', 'BolC8t49125H' => 'bol', 'BolC8t52538H' => 'bol', 'BolC8t52539H' => 'bol', 'BolC9t56681H' => 'bol', 'BolC9t58266H' => 'bol', 'BolSC21t60294H' => 'bol', 'BraA02t05670Z' => 'bra', 'BraA03t12716Z' => 'bra', 'BraA04t17685Z' => 'bra', 'BraA05t22788Z' => 'bra', 'BraA06t24032Z' => 'bra', 'BraA06t25625Z' => 'bra', 'BraA07t27930Z' => 'bra', 'BraA08t35242Z' => 'bra', 'BraA09t38609Z' => 'bra', 'BraA10t43905Z' => 'bra', 'C02p11060' => 'bna', 'C03p42990' => 'bna', 'C03p67310' => 'bna', 'C04p56990' => 'bna', 'C04p58660' => 'bna', 'C05p09890' => 'bna', 'C05p59680' => 'bna', 'C06p19830' => 'bna', 'C06p53040' => 'bna', 'C07p15230' => 'bna', 'C08p50070' => 'bna', 'C08p50090' => 'bna', 'C09p38330' => 'bna', 'C09p53940' => 'bna', 'CAN.G1014.1' => 'can', 'CAN.G644.30' => 'can', 'CAN.G84.47' => 'can', 'CAN.G919.8' => 'can', 'CANSAT54G0113' => 'cansat', 'CANSAT54G1286' => 'cansat', 'CANSAT64G1020' => 'cansat', 'CARHR008080' => 'chi', 'CARHR008090' => 'chi', 'CARHR012130' => 'chi', 'CARHR038390' => 'chi', 'CARHR082330' => 'chi', 'CARHR120520' => 'chi', 'CARHR151470' => 'chi', 'CARHR190950' => 'chi', 'Carub.0001s0760' => 'cru', 'Carub.0001s1146' => 'cru', 'Carub.0003s0721' => 'cru', 'Carub.0004s0858' => 'cru', 'Carub.0005s1040' => 'cru', 'Carub.0006s2035' => 'cru', 'Carub.0015s0005' => 'cru', 'Ca_01607_v3' => 'car', 'Ca_01677_v3' => 'car', 'Ca_06087_v3' => 'car', 'Ca_19238_v3' => 'car', 'Ca_19373_v3' => 'car', 'Ca_21079_v3' => 'car', 'CBR_g54016' => 'cbr', 'CBR_g54018' => 'cbr', 'CBR_g54020' => 'cbr', 'Cc01_g09780' => 'ccan', 'Cc01_g11680' => 'ccan', 'Cc02_g15610' => 'ccan', 'Cc05_g04350' => 'ccan', 'Cc09_g01580' => 'ccan', 'CDE01G0795' => 'cde', 'CDE02G2024' => 'cde', 'CDE02G2260' => 'cde', 'CDE02G4561' => 'cde', 'CDE05G2733' => 'cde', 'CDE05G3422' => 'cde', 'CDE06G2003' => 'cde', 'CDE08G0576' => 'cde', 'CDE09G0048' => 'cde', 'CDE11G0805' => 'cde', 'Cfa003644' => 'cfa', 'Cfa006290' => 'cfa', 'Cfa010080' => 'cfa', 'Cfa011376' => 'cfa', 'Cfa011576' => 'cfa', 'Cfa011577' => 'cfa', 'Cfa014389' => 'cfa', 'Ciclev10006044m.g' => 'ccl', 'Ciclev10006954m.g' => 'ccl', 'Ciclev10015131m.g' => 'ccl', 'Ciclev10015580m.g' => 'ccl', 'Ciclev10028359m.g' => 'ccl', 'Ciclev10028573m.g' => 'ccl', 'CiPaw.03G159300' => 'cil', 'CiPaw.04G115100' => 'cil', 'CiPaw.09G092800' => 'cil', 'CiPaw.10G071800' => 'cil', 'CiPaw.13G105800' => 'cil', 'CiPaw.13G141000' => 'cil', 'CiPaw.14G103400' => 'cil', 'ClCG01G012700' => 'cla', 'ClCG01G012720' => 'cla', 'ClCG01G021920' => 'cla', 'ClCG02G008870' => 'cla', 'ClCG02G020840' => 'cla', 'ClCG02G021930' => 'cla', 'COL.COLO4_19302' => 'col', 'COL.COLO4_25262' => 'col', 'COL.COLO4_31788' => 'col', 'Cpa.g.c34684' => 'cpa', 'Cpa.g.c36520.1' => 'cpa', 'Cpa.g.c45626' => 'cpa', 'Cpa.g.sc121.17' => 'cpa', 'Cpa.g.sc13.22' => 'cpa', 'Cpa.g.sc87.88' => 'cpa', 'Cre06.g261800' => 'cre', 'CsaV3_1G014500' => 'csa', 'CsaV3_1G014510' => 'csa', 'CsaV3_2G034880' => 'csa', 'CsaV3_6G014760' => 'csa', 'CsaV3_6G021500' => 'csa', 'CsaV3_6G048980' => 'csa', 'CSS0002511' => 'camsi', 'CSS0007556' => 'camsi', 'CSS0008532' => 'camsi', 'CSS0009709' => 'camsi', 'CSS0010486' => 'camsi', 'CSS0016768' => 'camsi', 'CSS0023512' => 'camsi', 'CSS0025341' => 'camsi', 'CSS0027999' => 'camsi', 'CSS0028944' => 'camsi', 'CSS0032292' => 'camsi', 'CSS0032464' => 'camsi', 'CSS0037153' => 'camsi', 'CSS0039256' => 'camsi', 'CSS0048392' => 'camsi', 'CSS0050458' => 'camsi', 'DCAR_004224' => 'dca', 'DCAR_006147' => 'dca', 'DCAR_006465' => 'dca', 'DCAR_008159' => 'dca', 'DCAR_012164' => 'dca', 'DCAR_019764' => 'dca', 'Dinv05418' => 'din', 'Dinv10839' => 'din', 'Dinv12521' => 'din', 'Dinv13900' => 'din', 'Dinv29426' => 'din', 'Duzib150G0263' => 'dzi', 'Duzib168G1178' => 'dzi', 'Duzib168G1924' => 'dzi', 'Duzib170G0299' => 'dzi', 'Duzib170G0813' => 'dzi', 'Duzib235G1128' => 'dzi', 'Duzib248G1060' => 'dzi', 'ECA232G1910' => 'eca', 'ECA233G4621' => 'eca', 'ECA238G1216' => 'eca', 'ECA238G1784' => 'eca', 'ECA248G1242' => 'eca', 'EL10Ac8g20071' => 'bvu', 'EL10Ac9g21086' => 'bvu', 'EL10Ac9g22407' => 'bvu', 'EL10Ac9g22412' => 'bvu', 'Eucgr.A01119' => 'egr', 'Eucgr.E04043' => 'egr', 'Eucgr.J00428' => 'egr', 'Eucgr.J00958' => 'egr', 'FAN11G3091' => 'fan', 'FAN11G3651' => 'fan', 'FAN16G2566' => 'fan', 'FAN21G3155' => 'fan', 'FAN21G3400' => 'fan', 'FAN21G3543' => 'fan', 'FAN25G0234' => 'fan', 'FAN25G1422' => 'fan', 'FAN25G3392' => 'fan', 'FvH4_3g01940' => 'fve', 'FvH4_3g29870' => 'fve', 'FvH4_3g33680' => 'fve', 'Glyma.09G004200' => 'gma', 'Glyma.11G151288' => 'gma', 'Glyma.11G189100' => 'gma', 'Glyma.12G072500' => 'gma', 'Glyma.12G085500' => 'gma', 'Glyma.12G181800' => 'gma', 'Glyma.12G193000' => 'gma', 'Glyma.13G309300' => 'gma', 'Glyma.13G319000' => 'gma', 'Glyma.17G012600' => 'gma', 'Gohir.A06G148600' => 'ghi', 'Gohir.A07G115800' => 'ghi', 'Gohir.A08G003600' => 'ghi', 'Gohir.A09G093300' => 'ghi', 'Gohir.A09G105400' => 'ghi', 'Gohir.A09G105500' => 'ghi', 'Gohir.D06G154600' => 'ghi', 'Gohir.D07G120200' => 'ghi', 'Gohir.D08G013900' => 'ghi', 'Gohir.D09G093100' => 'ghi', 'Gohir.D09G102200' => 'ghi', 'Gohir.D09G102300' => 'ghi', 'Gorai.001G129400' => 'gra', 'Gorai.004G008200' => 'gra', 'Gorai.006G109800' => 'gra', 'Gorai.006G119500' => 'gra', 'Gorai.006G121300' => 'gra', 'Gorai.010G180700' => 'gra', 'GSVIVG01012716001' => 'vvi', 'GSVIVG01025118001' => 'vvi', 'GSVIVG01030439001' => 'vvi', 'GSVIVG01031397001' => 'vvi', 'HanXRQChr01g0004201' => 'han', 'HanXRQChr02g0054941' => 'han', 'HanXRQChr05g0141811' => 'han', 'HanXRQChr07g0197751' => 'han', 'HanXRQChr11g0346691' => 'han', 'HanXRQChr13g0396971' => 'han', 'HanXRQChr14g0432951' => 'han', 'HanXRQChr14g0452001' => 'han', 'HanXRQChr15g0496681' => 'han', 'HanXRQChr17g0557491' => 'han', 'HanXRQChr17g0557501' => 'han', 'Haze_06809' => 'cav', 'Haze_12852' => 'cav', 'Haze_15850' => 'cav', 'Haze_23446' => 'cav', 'Haze_23942' => 'cav', 'Haze_23943' => 'cav', 'Hma1.2p1_0091F.1_g046450' => 'hma', 'Hma1.2p1_0128F.1_g059910' => 'hma', 'Hma1.2p1_0249F.1_g102260' => 'hma', 'Hma1.2p1_0453F.1_g156190' => 'hma', 'Hma1.2p1_0695F.1_g204380' => 'hma', 'Hma1.2p1_0749F.1_g212650' => 'hma', 'Hma1.2p1_2156F.1_g315420' => 'hma', 'Hma1.2p1_2686F.1_g326940' => 'hma', 'HPP92_006428' => 'vpl', 'HPP92_012069' => 'vpl', 'HPP92_014129' => 'vpl', 'HPP92_014133' => 'vpl', 'HPP92_017315' => 'vpl', 'HPP92_026445' => 'vpl', 'HPP92_026446' => 'vpl', 'Hund00774' => 'sun', 'Hund07682' => 'sun', 'Hund21413' => 'sun', 'Hund23462' => 'sun', 'Hund23463' => 'sun', 'Lalb_Chr03g0027911' => 'lal', 'Lalb_Chr13g0304271' => 'lal', 'Lalb_Chr19g0137471' => 'lal', 'Lalb_Chr22g0350651' => 'lal', 'Lalb_Chr24g0395151' => 'lal', 'Lj1A1231T40' => 'lonja', 'Lj1A221T48' => 'lonja', 'Lj1C924T12' => 'lonja', 'Lj2C993G6' => 'lonja', 'Lj3g0005790' => 'lja', 'Lj3g0015432' => 'lja', 'Lj3g0017722' => 'lja', 'Lj3g0018497' => 'lja', 'Lj4g0025071' => 'lja', 'Lsat_1_v5_gn_1_129680' => 'lsa', 'Lsat_1_v5_gn_2_25321' => 'lsa', 'Lsat_1_v5_gn_2_95461' => 'lsa', 'Lsat_1_v5_gn_4_159620' => 'lsa', 'Lsat_1_v5_gn_6_41301' => 'lsa', 'Lsat_1_v5_gn_6_74660' => 'lsa', 'Lsat_1_v5_gn_7_11520' => 'lsa', 'Lsat_1_v5_gn_9_67680' => 'lsa', 'Manes.04G008300' => 'mes', 'Manes.04G008400' => 'mes', 'Manes.04G026500' => 'mes', 'Manes.10G135300' => 'mes', 'Manes.11G157300' => 'mes', 'Manes.12G074000' => 'mes', 'Manes.16G006200' => 'mes', 'Manes.17G026400' => 'mes', 'Mapoly0024s0086' => 'mpo', 'Mapoly0024s0087' => 'mpo', 'Mapoly0071s0057' => 'mpo', 'Mapoly0204s0012' => 'mpo', 'MBI04_g37681_MAGBIO' => 'mbi', 'MBI05_g17779_MAGBIO' => 'mbi', 'MBI12_g31184_MAGBIO' => 'mbi', 'MBI17_g11083_MAGBIO' => 'mbi', 'MBI18_g03883_MAGBIO' => 'mbi', 'MBI18_g28940_MAGBIO' => 'mbi', 'MCO01G690' => 'mco', 'MD03G1109900' => 'mdo', 'MD03G1134800' => 'mdo', 'MD05G1348000' => 'mdo', 'MD10G1322400' => 'mdo', 'MD11G1123300' => 'mdo', 'MD11G1157600' => 'mdo', 'Medtr2g084875' => 'mtr', 'Medtr2g088130' => 'mtr', 'Medtr4g055310' => 'mtr', 'Medtr4g061070' => 'mtr', 'Medtr4g132250' => 'mtr', 'MELO3C004795.2' => 'cme', 'MELO3C004797.2' => 'cme', 'MELO3C007396.2' => 'cme', 'MELO3C019277.2' => 'cme', 'MELO3C021449.2' => 'cme', 'MELO3C025736.2' => 'cme', 'Migut.D02175' => 'egut', 'Migut.H01573' => 'egut', 'Migut.M01327' => 'egut', 'Migut.N02513' => 'egut', 'MSTRG.14638' => 'ama', 'MSTRG.18632' => 'ama', 'MSTRG.7203' => 'ama', 'Nitab4.5_0000533g0140' => 'nta', 'Nitab4.5_0000888g0150' => 'nta', 'Nitab4.5_0001453g0040' => 'nta', 'Nitab4.5_0002827g0090' => 'nta', 'Nitab4.5_0003082g0040' => 'nta', 'Nitab4.5_0007799g0040' => 'nta', 'Nitab4.5_0008983g0010' => 'nta', 'Nitab4.5_0009017g0020' => 'nta', 'Nn1g02132' => 'nnu', 'Nn1g03492' => 'nnu', 'Nn1g03493' => 'nnu', 'Nn1g03494' => 'nnu', 'Nn1g07164' => 'nnu', 'Nn1g07291' => 'nnu', 'Nn2g10655' => 'nnu', 'Nn2g11652' => 'nnu', 'Nn2g14008' => 'nnu', 'Nn3g17476' => 'nnu', 'Nn3g17477' => 'nnu', 'Nn4g22370' => 'nnu', 'Nn4g25255' => 'nnu', 'Nn5g27755' => 'nnu', 'Nn6g34260' => 'nnu', 'Nn6g35041' => 'nnu', 'Oeu005924.1' => 'oeu', 'Oeu008383.1' => 'oeu', 'Oeu014928.1' => 'oeu', 'Oeu019889.1' => 'oeu', 'Oeu022271.1' => 'oeu', 'Oeu025271.1' => 'oeu', 'Oeu036302.1' => 'oeu', 'Oeu044100.1' => 'oeu', 'Os01g0528300' => 'osa', 'Os03g0286200' => 'osa', 'Os04g0406600' => 'osa', 'Os07g0512000' => 'osa', 'Os07g0694600' => 'osa', 'Os08g0411000' => 'osa', 'Os09g0565700' => 'osa', 'Os09g0566050' => 'osa', 'Os10g0523700' => 'osa', 'Peaxi162Scf00002g00514' => 'pax', 'Peaxi162Scf00047g01817' => 'pax', 'Peaxi162Scf00114g00001' => 'pax', 'Peaxi162Scf00147g00613' => 'pax', 'Peaxi162Scf00389g00425' => 'pax', 'PGR042G1139' => 'pgr', 'PGR042G3273' => 'pgr', 'PGR102G2180' => 'pgr', 'PGR119G0234' => 'pgr', 'PGR119G0668' => 'pgr', 'PGSC0003DMG400007122' => 'stu', 'PGSC0003DMG400016478' => 'stu', 'PGSC0003DMG400025374' => 'stu', 'PGSC0003DMG400026536' => 'stu', 'Phvul.003G079600' => 'pvu', 'Phvul.005G115600' => 'pvu', 'Phvul.005G127100' => 'pvu', 'Phvul.006G149500' => 'pvu', 'Phvul.006G149600' => 'pvu', 'Phvul.011G071800' => 'pvu', 'Phvul.011G090400' => 'pvu', 'Potri.004G013400' => 'ptr', 'Potri.004G188100' => 'ptr', 'Potri.008G195500' => 'ptr', 'Potri.009G148800' => 'ptr', 'Potri.011G004700' => 'ptr', 'Pp3c17_22810' => 'ppa', 'Pp3c18_4480' => 'ppa', 'Pp3c19_13030' => 'ppa', 'Pp3c1_33620' => 'ppa', 'Pp3c2_9380' => 'ppa', 'PRCOL_00001023' => 'pco', 'Prupe.3G216300' => 'ppe', 'Prupe.4G019500' => 'ppe', 'Prupe.6G092500' => 'ppe', 'Prupe.6G119200' => 'ppe', 'Psat0s1945g0080' => 'psa', 'Psat0s4167g0040' => 'psa', 'Psat1g185800' => 'psa', 'Psat4g006440' => 'psa', 'Psat4g006480' => 'psa', 'Psat4g168120' => 'psa', 'Psat5g255680' => 'psa', 'Psat5g261760' => 'psa', 'Psat7g222120' => 'psa', 'PSO063G7252' => 'pso', 'PSO170G4778' => 'pso', 'PSO210G2249' => 'pso', 'PSO339G2411' => 'pso', 'PSO339G2457' => 'pso', 'PSO339G2854' => 'pso', 'PSO339G4288' => 'pso', 'PSO339G4615' => 'pso', 'PSO384G2796' => 'pso', 'PSO384G2940' => 'pso', 'PSO384G4227' => 'pso', 'PSO478G1425' => 'pso', 'PSO541G3863' => 'pso', 'PSO675G0507' => 'pso', 'PSO782G0338' => 'pso', 'PSO832G0644' => 'pso', 'QL01p013664' => 'qlo', 'QL01p036598' => 'qlo', 'QL05p072984' => 'qlo', 'QL08p005768' => 'qlo', 'QL08p032743' => 'qlo', 'QL93p0073_0439' => 'qlo', 'QL93p0073_0444' => 'qlo', 'RcHm_v2.0_Chr5g0002851' => 'rch', 'RcHm_v2.0_Chr5g0055201' => 'rch', 'RcHm_v2.0_Chr5g0061191' => 'rch', 'RcHm_v2.0_Chr7g0203231' => 'rch', 'Rhsim01G0208100' => 'rsi', 'Rhsim01G0208200' => 'rsi', 'Rhsim02G0106500' => 'rsi', 'Rhsim03G0107900' => 'rsi', 'Rhsim06G0163400' => 'rsi', 'Rhsim13G0105200' => 'rsi', 'Sabra04G0006300' => 'sbr', 'Sabra04G0127000' => 'sbr', 'Sabra08G0148700' => 'sbr', 'Sabra09G0117400' => 'sbr', 'SalBow1G3326' => 'sbo', 'SalBow3G3228' => 'sbo', 'SalBow6G1634' => 'sbo', 'SalBow6G3603' => 'sbo', 'SalBow6G5266' => 'sbo', 'SalBow7G2265' => 'sbo', 'SalBow8G0850' => 'sbo', 'SalBow8G2592' => 'sbo', 'Sc05g0009240' => 'sci', 'Sc12g0002300' => 'sci', 'Sc21g0000100' => 'sci', 'Sc21g0004720' => 'sci', 'Sed0002949' => 'sed', 'Sed0004114' => 'sed', 'Sed0004306' => 'sed', 'Sed0006172' => 'sed', 'Sed0008413' => 'sed', 'Sed0013809' => 'sed', 'Sed0019556' => 'sed', 'SEGI_03570' => 'sgi', 'SEGI_07859' => 'sgi', 'SEGI_15042' => 'sgi', 'SEGI_16263' => 'sgi', 'SEGI_16552' => 'sgi', 'SEGI_24331' => 'sgi', 'SEGI_27316' => 'sgi', 'SEGI_29521' => 'sgi', 'SEGI_41342' => 'sgi', 'SGA_v2.0_scaffold27G11617' => 'sas', 'SGA_v2.0_scaffold316G48428' => 'sas', 'SGA_v2.0_scaffold49G18261' => 'sas', 'SGA_v2.0_scaffold7G03831' => 'sas', 'SGA_v2.0_scaffold93G28359' => 'sas', 'SHI02210' => 'shi', 'SHI06028' => 'shi', 'SHI06321' => 'shi', 'SMO111G0012' => 'smo', 'SMO228G0080' => 'smo', 'SMO356G0756' => 'smo', 'Solyc02g080620.3' => 'sly', 'Solyc06g074530.1' => 'sly', 'Solyc11g066890.1' => 'sly', 'Solyc11g072520.3' => 'sly', 'Sopen02g025330' => 'spe', 'Sopen06g031000' => 'spe', 'Sopen09g008240' => 'spe', 'Sopen09g025210' => 'spe', 'Sopen11g026600' => 'spe', 'Sopen11g030170' => 'spe', 'Sp1g10420' => 'spa', 'Sp3g06570' => 'spa', 'Sp4g10660' => 'spa', 'Sp5g16460' => 'spa', 'Sp6g22710' => 'spa', 'TAR365G0112' => 'tar', 'TAR369G0717' => 'tar', 'TAR374G0976' => 'tar', 'TAR623G1128' => 'tar', 'TAR626G1937' => 'tar', 'TAR627G0123' => 'tar', 'TAR628G0305' => 'tar', 'TAR636G1176' => 'tar', 'TAR636G2442' => 'tar', 'THA.LOC104800556' => 'tha', 'THA.LOC104809501' => 'tha', 'THA.LOC104815126' => 'tha', 'THA.LOC104815732' => 'tha', 'THA.LOC104823528' => 'tha', 'Thecc.02G365600' => 'tca', 'Thecc.06G222300' => 'tca', 'Thecc.09G261800' => 'tca', 'Thecc.09G291400' => 'tca', 'Thhalv10003028m.g' => 'esa', 'Thhalv10007886m.g' => 'esa', 'Thhalv10016085m.g' => 'esa', 'Thhalv10016681m.g' => 'esa', 'Thhalv10020951m.g' => 'esa', 'TPR.G15598' => 'tpr', 'TPR.G29305' => 'tpr', 'TPR.G32395' => 'tpr', 'TPR.G36998' => 'tpr', 'TPR.G4227' => 'tpr', 'TWI18G1433' => 'twi', 'TWI31G0755' => 'twi', 'TWI38G0912' => 'twi', 'TWI75G1097' => 'twi', 'TWI75G1619' => 'twi', 'TWI79G1336' => 'twi', 'unitig_0.g943' => 'ugi', 'unitig_0.g944' => 'ugi', 'unitig_22.g6646' => 'ugi', 'unitig_37.g12681' => 'ugi', 'unitig_8.g3290' => 'ugi', 'vmacro03278' => 'vma', 'vmacro12197' => 'vma', 'vmacro14478' => 'vma', 'vmacro15787' => 'vma', 'vmacro15789' => 'vma', 'vmacro15790' => 'vma', 'vmacro15806' => 'vma', 'vmacro22907' => 'vma', 'vmacro22908' => 'vma', 'vmacro22909' => 'vma', 'vmacro23108' => 'vma', 'VMungo0540G0540' => 'vmu', 'VMungo0540G2468' => 'vmu', 'VMungo1080G0390' => 'vmu', 'VMungo1080G1165' => 'vmu', 'VMungo1127G0170' => 'vmu', 'VMungo1127G2099' => 'vmu', 'VMungo1215G3013' => 'vmu', 'Zm00001eb013110' => 'zma', 'Zm00001eb084260' => 'zma', 'Zm00001eb096110' => 'zma', 'Zm00001eb217510' => 'zma', 'Zm00001eb322550' => 'zma', 'Zm00001eb390770' => 'zma', 'Zm00001eb397170' => 'zma', 'Zm00001eb404610' => 'zma', 'Zm00001eb421790' => 'zma' ), 'gf_id' => 'HOM05D000911', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000911' ), 'data_identifier' => 'HOM05D000911', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000911', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27780' => 'bna', 'A03p35380' => 'bna', 'A04p21160' => 'bna', 'A05p40570' => 'bna', 'A06p26900' => 'bna', 'A08p33230' => 'bna', 'A09p65960' => 'bna', 'A10p18290' => 'bna', 'Aa31LG1G12990' => 'aar', 'Aa31LG1G2980' => 'aar', 'Aa31LG4G14320' => 'aar', 'Aa31LG7G11800' => 'aar', 'Aa31sc36G50' => 'aar', 'Aa31sc36G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3721' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5459' => 'aag', 'Actinidia03028' => 'ach', 'Actinidia03753' => 'ach', 'Actinidia04187' => 'ach', 'Actinidia05509' => 'ach', 'Actinidia24180' => 'ach', 'Actinidia26906' => 'ach', 'Actinidia37097' => 'ach', 'Actinidia38249' => 'ach', 'Ah.01g003470' => 'amhyb', 'Ah.01g004580' => 'amhyb', 'Ah.01g014850' => 'amhyb', 'Ah.01g016830' => 'amhyb', 'Ah.14g088000' => 'amhyb', 'AL1G22980' => 'aly', 'AL3G18990' => 'aly', 'AL4G22440' => 'aly', 'AL4G33180' => 'aly', 'AL5G22920' => 'aly', 'AL6G33660' => 'aly', 'AL8G20720' => 'aly', 'Aqoxy1G00935' => 'aox', 'Aqoxy1G02094' => 'aox', 'Aqoxy2G01239' => 'aox', 'Aqoxy4G01870' => 'aox', 'Aqoxy7G00450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.36ZVTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71EM27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5D6C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH3WRE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3NCM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RIM768' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YB5YRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z36GDV' => 'arhy', 'AT1G08250' => 'ath', 'AT1G11790' => 'ath', 'AT2G27820' => 'ath', 'AT3G07630' => 'ath', 'AT3G44720' => 'ath', 'AT5G22630' => 'ath', 'ATR0693G304' => 'atr', 'ATR0794G109' => 'atr', 'ATR0820G120' => 'atr', 'ATR1159G064' => 'atr', 'Atru.chr10.2239' => 'acertr', 'Atru.chr3.3371' => 'acertr', 'Atru.chr6.3202' => 'acertr', 'AUR62006499' => 'cqu', 'AUR62012718' => 'cqu', 'AUR62021938' => 'cqu', 'AUR62023932' => 'cqu', 'AUR62025034' => 'cqu', 'AUR62025035' => 'cqu', 'AUR62038307' => 'cqu', 'AUR62043466' => 'cqu', 'BcaB02g10748' => 'bca', 'BcaB03g13231' => 'bca', 'BcaB03g14689' => 'bca', 'BcaB05g22716' => 'bca', 'BcaB06g28172' => 'bca', 'BcaB08g36413' => 'bca', 'BcaC01g02186' => 'bca', 'BcaC01g04272' => 'bca', 'BcaC02g08080' => 'bca', 'BcaC02g08227' => 'bca', 'BcaC03g13901' => 'bca', 'BcaC04g19593' => 'bca', 'BcaC04g20874' => 'bca', 'BcaC05g29557' => 'bca', 'BcaC06g35505' => 'bca', 'BcaC07g41954' => 'bca', 'BcaC07g41955' => 'bca', 'BcaC07g41956' => 'bca', 'BcaC07g42519' => 'bca', 'BcaC07g42520' => 'bca', 'BcaC07g42523' => 'bca', 'BcaC07g42524' => 'bca', 'BcaC07g42525' => 'bca', 'BcaC08g47480' => 'bca', 'BcaC08g47481' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00530' => 'bna', 'BolC2t07178H' => 'bol', 'BolC3t16567H' => 'bol', 'BolC4t27234H' => 'bol', 'BolC5t29728H' => 'bol', 'BolC5t34622H' => 'bol', 'BolC6t40321H' => 'bol', 'BolC7t42028H' => 'bol', 'BolC8t49125H' => 'bol', 'BolC8t52538H' => 'bol', 'BolC8t52539H' => 'bol', 'BolC9t56681H' => 'bol', 'BolC9t58266H' => 'bol', 'BolSC21t60294H' => 'bol', 'BraA02t05670Z' => 'bra', 'BraA03t12716Z' => 'bra', 'BraA04t17685Z' => 'bra', 'BraA05t22788Z' => 'bra', 'BraA06t24032Z' => 'bra', 'BraA06t25625Z' => 'bra', 'BraA07t27930Z' => 'bra', 'BraA08t35242Z' => 'bra', 'BraA09t38609Z' => 'bra', 'BraA10t43905Z' => 'bra', 'C02p11060' => 'bna', 'C03p42990' => 'bna', 'C03p67310' => 'bna', 'C04p56990' => 'bna', 'C04p58660' => 'bna', 'C05p09890' => 'bna', 'C05p59680' => 'bna', 'C06p19830' => 'bna', 'C06p53040' => 'bna', 'C07p15230' => 'bna', 'C08p50070' => 'bna', 'C08p50090' => 'bna', 'C09p38330' => 'bna', 'C09p53940' => 'bna', 'CAN.G1014.1' => 'can', 'CAN.G644.30' => 'can', 'CAN.G84.47' => 'can', 'CAN.G919.8' => 'can', 'CANSAT54G0113' => 'cansat', 'CANSAT54G1286' => 'cansat', 'CANSAT64G1020' => 'cansat', 'CARHR008080' => 'chi', 'CARHR008090' => 'chi', 'CARHR012130' => 'chi', 'CARHR038390' => 'chi', 'CARHR082330' => 'chi', 'CARHR120520' => 'chi', 'CARHR151470' => 'chi', 'CARHR190950' => 'chi', 'Carub.0001s0760' => 'cru', 'Carub.0001s1146' => 'cru', 'Carub.0003s0721' => 'cru', 'Carub.0004s0858' => 'cru', 'Carub.0005s1040' => 'cru', 'Carub.0006s2035' => 'cru', 'Carub.0015s0005' => 'cru', 'Ca_01607_v3' => 'car', 'Ca_01677_v3' => 'car', 'Ca_06087_v3' => 'car', 'Ca_19238_v3' => 'car', 'Ca_19373_v3' => 'car', 'Ca_21079_v3' => 'car', 'CBR_g54016' => 'cbr', 'CBR_g54018' => 'cbr', 'CBR_g54020' => 'cbr', 'Cc01_g09780' => 'ccan', 'Cc01_g11680' => 'ccan', 'Cc02_g15610' => 'ccan', 'Cc05_g04350' => 'ccan', 'Cc09_g01580' => 'ccan', 'CDE01G0795' => 'cde', 'CDE02G2024' => 'cde', 'CDE02G2260' => 'cde', 'CDE02G4561' => 'cde', 'CDE05G2733' => 'cde', 'CDE05G3422' => 'cde', 'CDE06G2003' => 'cde', 'CDE08G0576' => 'cde', 'CDE09G0048' => 'cde', 'CDE11G0805' => 'cde', 'Cfa003644' => 'cfa', 'Cfa006290' => 'cfa', 'Cfa010080' => 'cfa', 'Cfa011376' => 'cfa', 'Cfa011576' => 'cfa', 'Cfa011577' => 'cfa', 'Cfa014389' => 'cfa', 'Ciclev10006044m.g' => 'ccl', 'Ciclev10006954m.g' => 'ccl', 'Ciclev10015131m.g' => 'ccl', 'Ciclev10015580m.g' => 'ccl', 'Ciclev10028359m.g' => 'ccl', 'Ciclev10028573m.g' => 'ccl', 'CiPaw.03G159300' => 'cil', 'CiPaw.04G115100' => 'cil', 'CiPaw.09G092800' => 'cil', 'CiPaw.10G071800' => 'cil', 'CiPaw.13G105800' => 'cil', 'CiPaw.13G141000' => 'cil', 'CiPaw.14G103400' => 'cil', 'ClCG01G012700' => 'cla', 'ClCG01G012720' => 'cla', 'ClCG01G021920' => 'cla', 'ClCG02G008870' => 'cla', 'ClCG02G020840' => 'cla', 'ClCG02G021930' => 'cla', 'COL.COLO4_19302' => 'col', 'COL.COLO4_25262' => 'col', 'COL.COLO4_31788' => 'col', 'Cpa.g.c34684' => 'cpa', 'Cpa.g.c36520.1' => 'cpa', 'Cpa.g.c45626' => 'cpa', 'Cpa.g.sc121.17' => 'cpa', 'Cpa.g.sc13.22' => 'cpa', 'Cpa.g.sc87.88' => 'cpa', 'Cre06.g261800' => 'cre', 'CsaV3_1G014500' => 'csa', 'CsaV3_1G014510' => 'csa', 'CsaV3_2G034880' => 'csa', 'CsaV3_6G014760' => 'csa', 'CsaV3_6G021500' => 'csa', 'CsaV3_6G048980' => 'csa', 'CSS0002511' => 'camsi', 'CSS0007556' => 'camsi', 'CSS0008532' => 'camsi', 'CSS0009709' => 'camsi', 'CSS0010486' => 'camsi', 'CSS0016768' => 'camsi', 'CSS0023512' => 'camsi', 'CSS0025341' => 'camsi', 'CSS0027999' => 'camsi', 'CSS0028944' => 'camsi', 'CSS0032292' => 'camsi', 'CSS0032464' => 'camsi', 'CSS0037153' => 'camsi', 'CSS0039256' => 'camsi', 'CSS0048392' => 'camsi', 'CSS0050458' => 'camsi', 'DCAR_004224' => 'dca', 'DCAR_006147' => 'dca', 'DCAR_006465' => 'dca', 'DCAR_008159' => 'dca', 'DCAR_012164' => 'dca', 'DCAR_019764' => 'dca', 'Dinv05418' => 'din', 'Dinv10839' => 'din', 'Dinv12521' => 'din', 'Dinv13900' => 'din', 'Dinv29426' => 'din', 'Duzib150G0263' => 'dzi', 'Duzib168G1178' => 'dzi', 'Duzib168G1924' => 'dzi', 'Duzib170G0299' => 'dzi', 'Duzib170G0813' => 'dzi', 'Duzib235G1128' => 'dzi', 'Duzib248G1060' => 'dzi', 'ECA232G1910' => 'eca', 'ECA233G4621' => 'eca', 'ECA238G1216' => 'eca', 'ECA238G1784' => 'eca', 'ECA248G1242' => 'eca', 'EL10Ac8g20071' => 'bvu', 'EL10Ac9g21086' => 'bvu', 'EL10Ac9g22407' => 'bvu', 'EL10Ac9g22412' => 'bvu', 'Eucgr.A01119' => 'egr', 'Eucgr.E04043' => 'egr', 'Eucgr.J00428' => 'egr', 'Eucgr.J00958' => 'egr', 'FAN11G3091' => 'fan', 'FAN11G3651' => 'fan', 'FAN16G2566' => 'fan', 'FAN21G3155' => 'fan', 'FAN21G3400' => 'fan', 'FAN21G3543' => 'fan', 'FAN25G0234' => 'fan', 'FAN25G1422' => 'fan', 'FAN25G3392' => 'fan', 'FvH4_3g01940' => 'fve', 'FvH4_3g29870' => 'fve', 'FvH4_3g33680' => 'fve', 'Glyma.09G004200' => 'gma', 'Glyma.11G151288' => 'gma', 'Glyma.11G189100' => 'gma', 'Glyma.12G072500' => 'gma', 'Glyma.12G085500' => 'gma', 'Glyma.12G181800' => 'gma', 'Glyma.12G193000' => 'gma', 'Glyma.13G309300' => 'gma', 'Glyma.13G319000' => 'gma', 'Glyma.17G012600' => 'gma', 'Gohir.A06G148600' => 'ghi', 'Gohir.A07G115800' => 'ghi', 'Gohir.A08G003600' => 'ghi', 'Gohir.A09G093300' => 'ghi', 'Gohir.A09G105400' => 'ghi', 'Gohir.A09G105500' => 'ghi', 'Gohir.D06G154600' => 'ghi', 'Gohir.D07G120200' => 'ghi', 'Gohir.D08G013900' => 'ghi', 'Gohir.D09G093100' => 'ghi', 'Gohir.D09G102200' => 'ghi', 'Gohir.D09G102300' => 'ghi', 'Gorai.001G129400' => 'gra', 'Gorai.004G008200' => 'gra', 'Gorai.006G109800' => 'gra', 'Gorai.006G119500' => 'gra', 'Gorai.006G121300' => 'gra', 'Gorai.010G180700' => 'gra', 'GSVIVG01012716001' => 'vvi', 'GSVIVG01025118001' => 'vvi', 'GSVIVG01030439001' => 'vvi', 'GSVIVG01031397001' => 'vvi', 'HanXRQChr01g0004201' => 'han', 'HanXRQChr02g0054941' => 'han', 'HanXRQChr05g0141811' => 'han', 'HanXRQChr07g0197751' => 'han', 'HanXRQChr11g0346691' => 'han', 'HanXRQChr13g0396971' => 'han', 'HanXRQChr14g0432951' => 'han', 'HanXRQChr14g0452001' => 'han', 'HanXRQChr15g0496681' => 'han', 'HanXRQChr17g0557491' => 'han', 'HanXRQChr17g0557501' => 'han', 'Haze_06809' => 'cav', 'Haze_12852' => 'cav', 'Haze_15850' => 'cav', 'Haze_23446' => 'cav', 'Haze_23942' => 'cav', 'Haze_23943' => 'cav', 'Hma1.2p1_0091F.1_g046450' => 'hma', 'Hma1.2p1_0128F.1_g059910' => 'hma', 'Hma1.2p1_0249F.1_g102260' => 'hma', 'Hma1.2p1_0453F.1_g156190' => 'hma', 'Hma1.2p1_0695F.1_g204380' => 'hma', 'Hma1.2p1_0749F.1_g212650' => 'hma', 'Hma1.2p1_2156F.1_g315420' => 'hma', 'Hma1.2p1_2686F.1_g326940' => 'hma', 'HPP92_006428' => 'vpl', 'HPP92_012069' => 'vpl', 'HPP92_014129' => 'vpl', 'HPP92_014133' => 'vpl', 'HPP92_017315' => 'vpl', 'HPP92_026445' => 'vpl', 'HPP92_026446' => 'vpl', 'Hund00774' => 'sun', 'Hund07682' => 'sun', 'Hund21413' => 'sun', 'Hund23462' => 'sun', 'Hund23463' => 'sun', 'Lalb_Chr03g0027911' => 'lal', 'Lalb_Chr13g0304271' => 'lal', 'Lalb_Chr19g0137471' => 'lal', 'Lalb_Chr22g0350651' => 'lal', 'Lalb_Chr24g0395151' => 'lal', 'Lj1A1231T40' => 'lonja', 'Lj1A221T48' => 'lonja', 'Lj1C924T12' => 'lonja', 'Lj2C993G6' => 'lonja', 'Lj3g0005790' => 'lja', 'Lj3g0015432' => 'lja', 'Lj3g0017722' => 'lja', 'Lj3g0018497' => 'lja', 'Lj4g0025071' => 'lja', 'Lsat_1_v5_gn_1_129680' => 'lsa', 'Lsat_1_v5_gn_2_25321' => 'lsa', 'Lsat_1_v5_gn_2_95461' => 'lsa', 'Lsat_1_v5_gn_4_159620' => 'lsa', 'Lsat_1_v5_gn_6_41301' => 'lsa', 'Lsat_1_v5_gn_6_74660' => 'lsa', 'Lsat_1_v5_gn_7_11520' => 'lsa', 'Lsat_1_v5_gn_9_67680' => 'lsa', 'Manes.04G008300' => 'mes', 'Manes.04G008400' => 'mes', 'Manes.04G026500' => 'mes', 'Manes.10G135300' => 'mes', 'Manes.11G157300' => 'mes', 'Manes.12G074000' => 'mes', 'Manes.16G006200' => 'mes', 'Manes.17G026400' => 'mes', 'Mapoly0024s0086' => 'mpo', 'Mapoly0024s0087' => 'mpo', 'Mapoly0071s0057' => 'mpo', 'Mapoly0204s0012' => 'mpo', 'MBI04_g37681_MAGBIO' => 'mbi', 'MBI05_g17779_MAGBIO' => 'mbi', 'MBI12_g31184_MAGBIO' => 'mbi', 'MBI17_g11083_MAGBIO' => 'mbi', 'MBI18_g03883_MAGBIO' => 'mbi', 'MBI18_g28940_MAGBIO' => 'mbi', 'MCO01G690' => 'mco', 'MD03G1109900' => 'mdo', 'MD03G1134800' => 'mdo', 'MD05G1348000' => 'mdo', 'MD10G1322400' => 'mdo', 'MD11G1123300' => 'mdo', 'MD11G1157600' => 'mdo', 'Medtr2g084875' => 'mtr', 'Medtr2g088130' => 'mtr', 'Medtr4g055310' => 'mtr', 'Medtr4g061070' => 'mtr', 'Medtr4g132250' => 'mtr', 'MELO3C004795.2' => 'cme', 'MELO3C004797.2' => 'cme', 'MELO3C007396.2' => 'cme', 'MELO3C019277.2' => 'cme', 'MELO3C021449.2' => 'cme', 'MELO3C025736.2' => 'cme', 'Migut.D02175' => 'egut', 'Migut.H01573' => 'egut', 'Migut.M01327' => 'egut', 'Migut.N02513' => 'egut', 'MSTRG.14638' => 'ama', 'MSTRG.18632' => 'ama', 'MSTRG.7203' => 'ama', 'Nitab4.5_0000533g0140' => 'nta', 'Nitab4.5_0000888g0150' => 'nta', 'Nitab4.5_0001453g0040' => 'nta', 'Nitab4.5_0002827g0090' => 'nta', 'Nitab4.5_0003082g0040' => 'nta', 'Nitab4.5_0007799g0040' => 'nta', 'Nitab4.5_0008983g0010' => 'nta', 'Nitab4.5_0009017g0020' => 'nta', 'Nn1g02132' => 'nnu', 'Nn1g03492' => 'nnu', 'Nn1g03493' => 'nnu', 'Nn1g03494' => 'nnu', 'Nn1g07164' => 'nnu', 'Nn1g07291' => 'nnu', 'Nn2g10655' => 'nnu', 'Nn2g11652' => 'nnu', 'Nn2g14008' => 'nnu', 'Nn3g17476' => 'nnu', 'Nn3g17477' => 'nnu', 'Nn4g22370' => 'nnu', 'Nn4g25255' => 'nnu', 'Nn5g27755' => 'nnu', 'Nn6g34260' => 'nnu', 'Nn6g35041' => 'nnu', 'Oeu005924.1' => 'oeu', 'Oeu008383.1' => 'oeu', 'Oeu014928.1' => 'oeu', 'Oeu019889.1' => 'oeu', 'Oeu022271.1' => 'oeu', 'Oeu025271.1' => 'oeu', 'Oeu036302.1' => 'oeu', 'Oeu044100.1' => 'oeu', 'Os01g0528300' => 'osa', 'Os03g0286200' => 'osa', 'Os04g0406600' => 'osa', 'Os07g0512000' => 'osa', 'Os07g0694600' => 'osa', 'Os08g0411000' => 'osa', 'Os09g0565700' => 'osa', 'Os09g0566050' => 'osa', 'Os10g0523700' => 'osa', 'Peaxi162Scf00002g00514' => 'pax', 'Peaxi162Scf00047g01817' => 'pax', 'Peaxi162Scf00114g00001' => 'pax', 'Peaxi162Scf00147g00613' => 'pax', 'Peaxi162Scf00389g00425' => 'pax', 'PGR042G1139' => 'pgr', 'PGR042G3273' => 'pgr', 'PGR102G2180' => 'pgr', 'PGR119G0234' => 'pgr', 'PGR119G0668' => 'pgr', 'PGSC0003DMG400007122' => 'stu', 'PGSC0003DMG400016478' => 'stu', 'PGSC0003DMG400025374' => 'stu', 'PGSC0003DMG400026536' => 'stu', 'Phvul.003G079600' => 'pvu', 'Phvul.005G115600' => 'pvu', 'Phvul.005G127100' => 'pvu', 'Phvul.006G149500' => 'pvu', 'Phvul.006G149600' => 'pvu', 'Phvul.011G071800' => 'pvu', 'Phvul.011G090400' => 'pvu', 'Potri.004G013400' => 'ptr', 'Potri.004G188100' => 'ptr', 'Potri.008G195500' => 'ptr', 'Potri.009G148800' => 'ptr', 'Potri.011G004700' => 'ptr', 'Pp3c17_22810' => 'ppa', 'Pp3c18_4480' => 'ppa', 'Pp3c19_13030' => 'ppa', 'Pp3c1_33620' => 'ppa', 'Pp3c2_9380' => 'ppa', 'PRCOL_00001023' => 'pco', 'Prupe.3G216300' => 'ppe', 'Prupe.4G019500' => 'ppe', 'Prupe.6G092500' => 'ppe', 'Prupe.6G119200' => 'ppe', 'Psat0s1945g0080' => 'psa', 'Psat0s4167g0040' => 'psa', 'Psat1g185800' => 'psa', 'Psat4g006440' => 'psa', 'Psat4g006480' => 'psa', 'Psat4g168120' => 'psa', 'Psat5g255680' => 'psa', 'Psat5g261760' => 'psa', 'Psat7g222120' => 'psa', 'PSO063G7252' => 'pso', 'PSO170G4778' => 'pso', 'PSO210G2249' => 'pso', 'PSO339G2411' => 'pso', 'PSO339G2457' => 'pso', 'PSO339G2854' => 'pso', 'PSO339G4288' => 'pso', 'PSO339G4615' => 'pso', 'PSO384G2796' => 'pso', 'PSO384G2940' => 'pso', 'PSO384G4227' => 'pso', 'PSO478G1425' => 'pso', 'PSO541G3863' => 'pso', 'PSO675G0507' => 'pso', 'PSO782G0338' => 'pso', 'PSO832G0644' => 'pso', 'QL01p013664' => 'qlo', 'QL01p036598' => 'qlo', 'QL05p072984' => 'qlo', 'QL08p005768' => 'qlo', 'QL08p032743' => 'qlo', 'QL93p0073_0439' => 'qlo', 'QL93p0073_0444' => 'qlo', 'RcHm_v2.0_Chr5g0002851' => 'rch', 'RcHm_v2.0_Chr5g0055201' => 'rch', 'RcHm_v2.0_Chr5g0061191' => 'rch', 'RcHm_v2.0_Chr7g0203231' => 'rch', 'Rhsim01G0208100' => 'rsi', 'Rhsim01G0208200' => 'rsi', 'Rhsim02G0106500' => 'rsi', 'Rhsim03G0107900' => 'rsi', 'Rhsim06G0163400' => 'rsi', 'Rhsim13G0105200' => 'rsi', 'Sabra04G0006300' => 'sbr', 'Sabra04G0127000' => 'sbr', 'Sabra08G0148700' => 'sbr', 'Sabra09G0117400' => 'sbr', 'SalBow1G3326' => 'sbo', 'SalBow3G3228' => 'sbo', 'SalBow6G1634' => 'sbo', 'SalBow6G3603' => 'sbo', 'SalBow6G5266' => 'sbo', 'SalBow7G2265' => 'sbo', 'SalBow8G0850' => 'sbo', 'SalBow8G2592' => 'sbo', 'Sc05g0009240' => 'sci', 'Sc12g0002300' => 'sci', 'Sc21g0000100' => 'sci', 'Sc21g0004720' => 'sci', 'Sed0002949' => 'sed', 'Sed0004114' => 'sed', 'Sed0004306' => 'sed', 'Sed0006172' => 'sed', 'Sed0008413' => 'sed', 'Sed0013809' => 'sed', 'Sed0019556' => 'sed', 'SEGI_03570' => 'sgi', 'SEGI_07859' => 'sgi', 'SEGI_15042' => 'sgi', 'SEGI_16263' => 'sgi', 'SEGI_16552' => 'sgi', 'SEGI_24331' => 'sgi', 'SEGI_27316' => 'sgi', 'SEGI_29521' => 'sgi', 'SEGI_41342' => 'sgi', 'SGA_v2.0_scaffold27G11617' => 'sas', 'SGA_v2.0_scaffold316G48428' => 'sas', 'SGA_v2.0_scaffold49G18261' => 'sas', 'SGA_v2.0_scaffold7G03831' => 'sas', 'SGA_v2.0_scaffold93G28359' => 'sas', 'SHI02210' => 'shi', 'SHI06028' => 'shi', 'SHI06321' => 'shi', 'SMO111G0012' => 'smo', 'SMO228G0080' => 'smo', 'SMO356G0756' => 'smo', 'Solyc02g080620.3' => 'sly', 'Solyc06g074530.1' => 'sly', 'Solyc11g066890.1' => 'sly', 'Solyc11g072520.3' => 'sly', 'Sopen02g025330' => 'spe', 'Sopen06g031000' => 'spe', 'Sopen09g008240' => 'spe', 'Sopen09g025210' => 'spe', 'Sopen11g026600' => 'spe', 'Sopen11g030170' => 'spe', 'Sp1g10420' => 'spa', 'Sp3g06570' => 'spa', 'Sp4g10660' => 'spa', 'Sp5g16460' => 'spa', 'Sp6g22710' => 'spa', 'TAR365G0112' => 'tar', 'TAR369G0717' => 'tar', 'TAR374G0976' => 'tar', 'TAR623G1128' => 'tar', 'TAR626G1937' => 'tar', 'TAR627G0123' => 'tar', 'TAR628G0305' => 'tar', 'TAR636G1176' => 'tar', 'TAR636G2442' => 'tar', 'THA.LOC104800556' => 'tha', 'THA.LOC104809501' => 'tha', 'THA.LOC104815126' => 'tha', 'THA.LOC104815732' => 'tha', 'THA.LOC104823528' => 'tha', 'Thecc.02G365600' => 'tca', 'Thecc.06G222300' => 'tca', 'Thecc.09G261800' => 'tca', 'Thecc.09G291400' => 'tca', 'Thhalv10003028m.g' => 'esa', 'Thhalv10007886m.g' => 'esa', 'Thhalv10016085m.g' => 'esa', 'Thhalv10016681m.g' => 'esa', 'Thhalv10020951m.g' => 'esa', 'TPR.G15598' => 'tpr', 'TPR.G29305' => 'tpr', 'TPR.G32395' => 'tpr', 'TPR.G36998' => 'tpr', 'TPR.G4227' => 'tpr', 'TWI18G1433' => 'twi', 'TWI31G0755' => 'twi', 'TWI38G0912' => 'twi', 'TWI75G1097' => 'twi', 'TWI75G1619' => 'twi', 'TWI79G1336' => 'twi', 'unitig_0.g943' => 'ugi', 'unitig_0.g944' => 'ugi', 'unitig_22.g6646' => 'ugi', 'unitig_37.g12681' => 'ugi', 'unitig_8.g3290' => 'ugi', 'vmacro03278' => 'vma', 'vmacro12197' => 'vma', 'vmacro14478' => 'vma', 'vmacro15787' => 'vma', 'vmacro15789' => 'vma', 'vmacro15790' => 'vma', 'vmacro15806' => 'vma', 'vmacro22907' => 'vma', 'vmacro22908' => 'vma', 'vmacro22909' => 'vma', 'vmacro23108' => 'vma', 'VMungo0540G0540' => 'vmu', 'VMungo0540G2468' => 'vmu', 'VMungo1080G0390' => 'vmu', 'VMungo1080G1165' => 'vmu', 'VMungo1127G0170' => 'vmu', 'VMungo1127G2099' => 'vmu', 'VMungo1215G3013' => 'vmu', 'Zm00001eb013110' => 'zma', 'Zm00001eb084260' => 'zma', 'Zm00001eb096110' => 'zma', 'Zm00001eb217510' => 'zma', 'Zm00001eb322550' => 'zma', 'Zm00001eb390770' => 'zma', 'Zm00001eb397170' => 'zma', 'Zm00001eb404610' => 'zma', 'Zm00001eb421790' => 'zma' ) $gf_id = 'HOM05D000911' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000911' ) $data_identifier = 'HOM05D000911' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 16, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 5, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 6, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 8, 'nnu' => (int) 16, 'oeu' => (int) 8, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 5, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 16, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421790' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000911', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27780' => 'bna', 'A03p35380' => 'bna', 'A04p21160' => 'bna', 'A05p40570' => 'bna', 'A06p26900' => 'bna', 'A08p33230' => 'bna', 'A09p65960' => 'bna', 'A10p18290' => 'bna', 'Aa31LG1G12990' => 'aar', 'Aa31LG1G2980' => 'aar', 'Aa31LG4G14320' => 'aar', 'Aa31LG7G11800' => 'aar', 'Aa31sc36G50' => 'aar', 'Aa31sc36G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3721' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5459' => 'aag', 'Actinidia03028' => 'ach', 'Actinidia03753' => 'ach', 'Actinidia04187' => 'ach', 'Actinidia05509' => 'ach', 'Actinidia24180' => 'ach', 'Actinidia26906' => 'ach', 'Actinidia37097' => 'ach', 'Actinidia38249' => 'ach', 'Ah.01g003470' => 'amhyb', 'Ah.01g004580' => 'amhyb', 'Ah.01g014850' => 'amhyb', 'Ah.01g016830' => 'amhyb', 'Ah.14g088000' => 'amhyb', 'AL1G22980' => 'aly', 'AL3G18990' => 'aly', 'AL4G22440' => 'aly', 'AL4G33180' => 'aly', 'AL5G22920' => 'aly', 'AL6G33660' => 'aly', 'AL8G20720' => 'aly', 'Aqoxy1G00935' => 'aox', 'Aqoxy1G02094' => 'aox', 'Aqoxy2G01239' => 'aox', 'Aqoxy4G01870' => 'aox', 'Aqoxy7G00450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.36ZVTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71EM27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5D6C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH3WRE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3NCM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RIM768' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YB5YRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z36GDV' => 'arhy', 'AT1G08250' => 'ath', 'AT1G11790' => 'ath', 'AT2G27820' => 'ath', 'AT3G07630' => 'ath', 'AT3G44720' => 'ath', 'AT5G22630' => 'ath', 'ATR0693G304' => 'atr', 'ATR0794G109' => 'atr', 'ATR0820G120' => 'atr', 'ATR1159G064' => 'atr', 'Atru.chr10.2239' => 'acertr', 'Atru.chr3.3371' => 'acertr', 'Atru.chr6.3202' => 'acertr', 'AUR62006499' => 'cqu', 'AUR62012718' => 'cqu', 'AUR62021938' => 'cqu', 'AUR62023932' => 'cqu', 'AUR62025034' => 'cqu', 'AUR62025035' => 'cqu', 'AUR62038307' => 'cqu', 'AUR62043466' => 'cqu', 'BcaB02g10748' => 'bca', 'BcaB03g13231' => 'bca', 'BcaB03g14689' => 'bca', 'BcaB05g22716' => 'bca', 'BcaB06g28172' => 'bca', 'BcaB08g36413' => 'bca', 'BcaC01g02186' => 'bca', 'BcaC01g04272' => 'bca', 'BcaC02g08080' => 'bca', 'BcaC02g08227' => 'bca', 'BcaC03g13901' => 'bca', 'BcaC04g19593' => 'bca', 'BcaC04g20874' => 'bca', 'BcaC05g29557' => 'bca', 'BcaC06g35505' => 'bca', 'BcaC07g41954' => 'bca', 'BcaC07g41955' => 'bca', 'BcaC07g41956' => 'bca', 'BcaC07g42519' => 'bca', 'BcaC07g42520' => 'bca', 'BcaC07g42523' => 'bca', 'BcaC07g42524' => 'bca', 'BcaC07g42525' => 'bca', 'BcaC08g47480' => 'bca', 'BcaC08g47481' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00530' => 'bna', 'BolC2t07178H' => 'bol', 'BolC3t16567H' => 'bol', 'BolC4t27234H' => 'bol', 'BolC5t29728H' => 'bol', 'BolC5t34622H' => 'bol', 'BolC6t40321H' => 'bol', 'BolC7t42028H' => 'bol', 'BolC8t49125H' => 'bol', 'BolC8t52538H' => 'bol', 'BolC8t52539H' => 'bol', 'BolC9t56681H' => 'bol', 'BolC9t58266H' => 'bol', 'BolSC21t60294H' => 'bol', 'BraA02t05670Z' => 'bra', 'BraA03t12716Z' => 'bra', 'BraA04t17685Z' => 'bra', 'BraA05t22788Z' => 'bra', 'BraA06t24032Z' => 'bra', 'BraA06t25625Z' => 'bra', 'BraA07t27930Z' => 'bra', 'BraA08t35242Z' => 'bra', 'BraA09t38609Z' => 'bra', 'BraA10t43905Z' => 'bra', 'C02p11060' => 'bna', 'C03p42990' => 'bna', 'C03p67310' => 'bna', 'C04p56990' => 'bna', 'C04p58660' => 'bna', 'C05p09890' => 'bna', 'C05p59680' => 'bna', 'C06p19830' => 'bna', 'C06p53040' => 'bna', 'C07p15230' => 'bna', 'C08p50070' => 'bna', 'C08p50090' => 'bna', 'C09p38330' => 'bna', 'C09p53940' => 'bna', 'CAN.G1014.1' => 'can', 'CAN.G644.30' => 'can', 'CAN.G84.47' => 'can', 'CAN.G919.8' => 'can', 'CANSAT54G0113' => 'cansat', 'CANSAT54G1286' => 'cansat', 'CANSAT64G1020' => 'cansat', 'CARHR008080' => 'chi', 'CARHR008090' => 'chi', 'CARHR012130' => 'chi', 'CARHR038390' => 'chi', 'CARHR082330' => 'chi', 'CARHR120520' => 'chi', 'CARHR151470' => 'chi', 'CARHR190950' => 'chi', 'Carub.0001s0760' => 'cru', 'Carub.0001s1146' => 'cru', 'Carub.0003s0721' => 'cru', 'Carub.0004s0858' => 'cru', 'Carub.0005s1040' => 'cru', 'Carub.0006s2035' => 'cru', 'Carub.0015s0005' => 'cru', 'Ca_01607_v3' => 'car', 'Ca_01677_v3' => 'car', 'Ca_06087_v3' => 'car', 'Ca_19238_v3' => 'car', 'Ca_19373_v3' => 'car', 'Ca_21079_v3' => 'car', 'CBR_g54016' => 'cbr', 'CBR_g54018' => 'cbr', 'CBR_g54020' => 'cbr', 'Cc01_g09780' => 'ccan', 'Cc01_g11680' => 'ccan', 'Cc02_g15610' => 'ccan', 'Cc05_g04350' => 'ccan', 'Cc09_g01580' => 'ccan', 'CDE01G0795' => 'cde', 'CDE02G2024' => 'cde', 'CDE02G2260' => 'cde', 'CDE02G4561' => 'cde', 'CDE05G2733' => 'cde', 'CDE05G3422' => 'cde', 'CDE06G2003' => 'cde', 'CDE08G0576' => 'cde', 'CDE09G0048' => 'cde', 'CDE11G0805' => 'cde', 'Cfa003644' => 'cfa', 'Cfa006290' => 'cfa', 'Cfa010080' => 'cfa', 'Cfa011376' => 'cfa', 'Cfa011576' => 'cfa', 'Cfa011577' => 'cfa', 'Cfa014389' => 'cfa', 'Ciclev10006044m.g' => 'ccl', 'Ciclev10006954m.g' => 'ccl', 'Ciclev10015131m.g' => 'ccl', 'Ciclev10015580m.g' => 'ccl', 'Ciclev10028359m.g' => 'ccl', 'Ciclev10028573m.g' => 'ccl', 'CiPaw.03G159300' => 'cil', 'CiPaw.04G115100' => 'cil', 'CiPaw.09G092800' => 'cil', 'CiPaw.10G071800' => 'cil', 'CiPaw.13G105800' => 'cil', 'CiPaw.13G141000' => 'cil', 'CiPaw.14G103400' => 'cil', 'ClCG01G012700' => 'cla', 'ClCG01G012720' => 'cla', 'ClCG01G021920' => 'cla', 'ClCG02G008870' => 'cla', 'ClCG02G020840' => 'cla', 'ClCG02G021930' => 'cla', 'COL.COLO4_19302' => 'col', 'COL.COLO4_25262' => 'col', 'COL.COLO4_31788' => 'col', 'Cpa.g.c34684' => 'cpa', 'Cpa.g.c36520.1' => 'cpa', 'Cpa.g.c45626' => 'cpa', 'Cpa.g.sc121.17' => 'cpa', 'Cpa.g.sc13.22' => 'cpa', 'Cpa.g.sc87.88' => 'cpa', 'Cre06.g261800' => 'cre', 'CsaV3_1G014500' => 'csa', 'CsaV3_1G014510' => 'csa', 'CsaV3_2G034880' => 'csa', 'CsaV3_6G014760' => 'csa', 'CsaV3_6G021500' => 'csa', 'CsaV3_6G048980' => 'csa', 'CSS0002511' => 'camsi', 'CSS0007556' => 'camsi', 'CSS0008532' => 'camsi', 'CSS0009709' => 'camsi', 'CSS0010486' => 'camsi', 'CSS0016768' => 'camsi', 'CSS0023512' => 'camsi', 'CSS0025341' => 'camsi', 'CSS0027999' => 'camsi', 'CSS0028944' => 'camsi', 'CSS0032292' => 'camsi', 'CSS0032464' => 'camsi', 'CSS0037153' => 'camsi', 'CSS0039256' => 'camsi', 'CSS0048392' => 'camsi', 'CSS0050458' => 'camsi', 'DCAR_004224' => 'dca', 'DCAR_006147' => 'dca', 'DCAR_006465' => 'dca', 'DCAR_008159' => 'dca', 'DCAR_012164' => 'dca', 'DCAR_019764' => 'dca', 'Dinv05418' => 'din', 'Dinv10839' => 'din', 'Dinv12521' => 'din', 'Dinv13900' => 'din', 'Dinv29426' => 'din', 'Duzib150G0263' => 'dzi', 'Duzib168G1178' => 'dzi', 'Duzib168G1924' => 'dzi', 'Duzib170G0299' => 'dzi', 'Duzib170G0813' => 'dzi', 'Duzib235G1128' => 'dzi', 'Duzib248G1060' => 'dzi', 'ECA232G1910' => 'eca', 'ECA233G4621' => 'eca', 'ECA238G1216' => 'eca', 'ECA238G1784' => 'eca', 'ECA248G1242' => 'eca', 'EL10Ac8g20071' => 'bvu', 'EL10Ac9g21086' => 'bvu', 'EL10Ac9g22407' => 'bvu', 'EL10Ac9g22412' => 'bvu', 'Eucgr.A01119' => 'egr', 'Eucgr.E04043' => 'egr', 'Eucgr.J00428' => 'egr', 'Eucgr.J00958' => 'egr', 'FAN11G3091' => 'fan', 'FAN11G3651' => 'fan', 'FAN16G2566' => 'fan', 'FAN21G3155' => 'fan', 'FAN21G3400' => 'fan', 'FAN21G3543' => 'fan', 'FAN25G0234' => 'fan', 'FAN25G1422' => 'fan', 'FAN25G3392' => 'fan', 'FvH4_3g01940' => 'fve', 'FvH4_3g29870' => 'fve', 'FvH4_3g33680' => 'fve', 'Glyma.09G004200' => 'gma', 'Glyma.11G151288' => 'gma', 'Glyma.11G189100' => 'gma', 'Glyma.12G072500' => 'gma', 'Glyma.12G085500' => 'gma', 'Glyma.12G181800' => 'gma', 'Glyma.12G193000' => 'gma', 'Glyma.13G309300' => 'gma', 'Glyma.13G319000' => 'gma', 'Glyma.17G012600' => 'gma', 'Gohir.A06G148600' => 'ghi', 'Gohir.A07G115800' => 'ghi', 'Gohir.A08G003600' => 'ghi', 'Gohir.A09G093300' => 'ghi', 'Gohir.A09G105400' => 'ghi', 'Gohir.A09G105500' => 'ghi', 'Gohir.D06G154600' => 'ghi', 'Gohir.D07G120200' => 'ghi', 'Gohir.D08G013900' => 'ghi', 'Gohir.D09G093100' => 'ghi', 'Gohir.D09G102200' => 'ghi', 'Gohir.D09G102300' => 'ghi', 'Gorai.001G129400' => 'gra', 'Gorai.004G008200' => 'gra', 'Gorai.006G109800' => 'gra', 'Gorai.006G119500' => 'gra', 'Gorai.006G121300' => 'gra', 'Gorai.010G180700' => 'gra', 'GSVIVG01012716001' => 'vvi', 'GSVIVG01025118001' => 'vvi', 'GSVIVG01030439001' => 'vvi', 'GSVIVG01031397001' => 'vvi', 'HanXRQChr01g0004201' => 'han', 'HanXRQChr02g0054941' => 'han', 'HanXRQChr05g0141811' => 'han', 'HanXRQChr07g0197751' => 'han', 'HanXRQChr11g0346691' => 'han', 'HanXRQChr13g0396971' => 'han', 'HanXRQChr14g0432951' => 'han', 'HanXRQChr14g0452001' => 'han', 'HanXRQChr15g0496681' => 'han', 'HanXRQChr17g0557491' => 'han', 'HanXRQChr17g0557501' => 'han', 'Haze_06809' => 'cav', 'Haze_12852' => 'cav', 'Haze_15850' => 'cav', 'Haze_23446' => 'cav', 'Haze_23942' => 'cav', 'Haze_23943' => 'cav', 'Hma1.2p1_0091F.1_g046450' => 'hma', 'Hma1.2p1_0128F.1_g059910' => 'hma', 'Hma1.2p1_0249F.1_g102260' => 'hma', 'Hma1.2p1_0453F.1_g156190' => 'hma', 'Hma1.2p1_0695F.1_g204380' => 'hma', 'Hma1.2p1_0749F.1_g212650' => 'hma', 'Hma1.2p1_2156F.1_g315420' => 'hma', 'Hma1.2p1_2686F.1_g326940' => 'hma', 'HPP92_006428' => 'vpl', 'HPP92_012069' => 'vpl', 'HPP92_014129' => 'vpl', 'HPP92_014133' => 'vpl', 'HPP92_017315' => 'vpl', 'HPP92_026445' => 'vpl', 'HPP92_026446' => 'vpl', 'Hund00774' => 'sun', 'Hund07682' => 'sun', 'Hund21413' => 'sun', 'Hund23462' => 'sun', 'Hund23463' => 'sun', 'Lalb_Chr03g0027911' => 'lal', 'Lalb_Chr13g0304271' => 'lal', 'Lalb_Chr19g0137471' => 'lal', 'Lalb_Chr22g0350651' => 'lal', 'Lalb_Chr24g0395151' => 'lal', 'Lj1A1231T40' => 'lonja', 'Lj1A221T48' => 'lonja', 'Lj1C924T12' => 'lonja', 'Lj2C993G6' => 'lonja', 'Lj3g0005790' => 'lja', 'Lj3g0015432' => 'lja', 'Lj3g0017722' => 'lja', 'Lj3g0018497' => 'lja', 'Lj4g0025071' => 'lja', 'Lsat_1_v5_gn_1_129680' => 'lsa', 'Lsat_1_v5_gn_2_25321' => 'lsa', 'Lsat_1_v5_gn_2_95461' => 'lsa', 'Lsat_1_v5_gn_4_159620' => 'lsa', 'Lsat_1_v5_gn_6_41301' => 'lsa', 'Lsat_1_v5_gn_6_74660' => 'lsa', 'Lsat_1_v5_gn_7_11520' => 'lsa', 'Lsat_1_v5_gn_9_67680' => 'lsa', 'Manes.04G008300' => 'mes', 'Manes.04G008400' => 'mes', 'Manes.04G026500' => 'mes', 'Manes.10G135300' => 'mes', 'Manes.11G157300' => 'mes', 'Manes.12G074000' => 'mes', 'Manes.16G006200' => 'mes', 'Manes.17G026400' => 'mes', 'Mapoly0024s0086' => 'mpo', 'Mapoly0024s0087' => 'mpo', 'Mapoly0071s0057' => 'mpo', 'Mapoly0204s0012' => 'mpo', 'MBI04_g37681_MAGBIO' => 'mbi', 'MBI05_g17779_MAGBIO' => 'mbi', 'MBI12_g31184_MAGBIO' => 'mbi', 'MBI17_g11083_MAGBIO' => 'mbi', 'MBI18_g03883_MAGBIO' => 'mbi', 'MBI18_g28940_MAGBIO' => 'mbi', 'MCO01G690' => 'mco', 'MD03G1109900' => 'mdo', 'MD03G1134800' => 'mdo', 'MD05G1348000' => 'mdo', 'MD10G1322400' => 'mdo', 'MD11G1123300' => 'mdo', 'MD11G1157600' => 'mdo', 'Medtr2g084875' => 'mtr', 'Medtr2g088130' => 'mtr', 'Medtr4g055310' => 'mtr', 'Medtr4g061070' => 'mtr', 'Medtr4g132250' => 'mtr', 'MELO3C004795.2' => 'cme', 'MELO3C004797.2' => 'cme', 'MELO3C007396.2' => 'cme', 'MELO3C019277.2' => 'cme', 'MELO3C021449.2' => 'cme', 'MELO3C025736.2' => 'cme', 'Migut.D02175' => 'egut', 'Migut.H01573' => 'egut', 'Migut.M01327' => 'egut', 'Migut.N02513' => 'egut', 'MSTRG.14638' => 'ama', 'MSTRG.18632' => 'ama', 'MSTRG.7203' => 'ama', 'Nitab4.5_0000533g0140' => 'nta', 'Nitab4.5_0000888g0150' => 'nta', 'Nitab4.5_0001453g0040' => 'nta', 'Nitab4.5_0002827g0090' => 'nta', 'Nitab4.5_0003082g0040' => 'nta', 'Nitab4.5_0007799g0040' => 'nta', 'Nitab4.5_0008983g0010' => 'nta', 'Nitab4.5_0009017g0020' => 'nta', 'Nn1g02132' => 'nnu', 'Nn1g03492' => 'nnu', 'Nn1g03493' => 'nnu', 'Nn1g03494' => 'nnu', 'Nn1g07164' => 'nnu', 'Nn1g07291' => 'nnu', 'Nn2g10655' => 'nnu', 'Nn2g11652' => 'nnu', 'Nn2g14008' => 'nnu', 'Nn3g17476' => 'nnu', 'Nn3g17477' => 'nnu', 'Nn4g22370' => 'nnu', 'Nn4g25255' => 'nnu', 'Nn5g27755' => 'nnu', 'Nn6g34260' => 'nnu', 'Nn6g35041' => 'nnu', 'Oeu005924.1' => 'oeu', 'Oeu008383.1' => 'oeu', 'Oeu014928.1' => 'oeu', 'Oeu019889.1' => 'oeu', 'Oeu022271.1' => 'oeu', 'Oeu025271.1' => 'oeu', 'Oeu036302.1' => 'oeu', 'Oeu044100.1' => 'oeu', 'Os01g0528300' => 'osa', 'Os03g0286200' => 'osa', 'Os04g0406600' => 'osa', 'Os07g0512000' => 'osa', 'Os07g0694600' => 'osa', 'Os08g0411000' => 'osa', 'Os09g0565700' => 'osa', 'Os09g0566050' => 'osa', 'Os10g0523700' => 'osa', 'Peaxi162Scf00002g00514' => 'pax', 'Peaxi162Scf00047g01817' => 'pax', 'Peaxi162Scf00114g00001' => 'pax', 'Peaxi162Scf00147g00613' => 'pax', 'Peaxi162Scf00389g00425' => 'pax', 'PGR042G1139' => 'pgr', 'PGR042G3273' => 'pgr', 'PGR102G2180' => 'pgr', 'PGR119G0234' => 'pgr', 'PGR119G0668' => 'pgr', 'PGSC0003DMG400007122' => 'stu', 'PGSC0003DMG400016478' => 'stu', 'PGSC0003DMG400025374' => 'stu', 'PGSC0003DMG400026536' => 'stu', 'Phvul.003G079600' => 'pvu', 'Phvul.005G115600' => 'pvu', 'Phvul.005G127100' => 'pvu', 'Phvul.006G149500' => 'pvu', 'Phvul.006G149600' => 'pvu', 'Phvul.011G071800' => 'pvu', 'Phvul.011G090400' => 'pvu', 'Potri.004G013400' => 'ptr', 'Potri.004G188100' => 'ptr', 'Potri.008G195500' => 'ptr', 'Potri.009G148800' => 'ptr', 'Potri.011G004700' => 'ptr', 'Pp3c17_22810' => 'ppa', 'Pp3c18_4480' => 'ppa', 'Pp3c19_13030' => 'ppa', 'Pp3c1_33620' => 'ppa', 'Pp3c2_9380' => 'ppa', 'PRCOL_00001023' => 'pco', 'Prupe.3G216300' => 'ppe', 'Prupe.4G019500' => 'ppe', 'Prupe.6G092500' => 'ppe', 'Prupe.6G119200' => 'ppe', 'Psat0s1945g0080' => 'psa', 'Psat0s4167g0040' => 'psa', 'Psat1g185800' => 'psa', 'Psat4g006440' => 'psa', 'Psat4g006480' => 'psa', 'Psat4g168120' => 'psa', 'Psat5g255680' => 'psa', 'Psat5g261760' => 'psa', 'Psat7g222120' => 'psa', 'PSO063G7252' => 'pso', 'PSO170G4778' => 'pso', 'PSO210G2249' => 'pso', 'PSO339G2411' => 'pso', 'PSO339G2457' => 'pso', 'PSO339G2854' => 'pso', 'PSO339G4288' => 'pso', 'PSO339G4615' => 'pso', 'PSO384G2796' => 'pso', 'PSO384G2940' => 'pso', 'PSO384G4227' => 'pso', 'PSO478G1425' => 'pso', 'PSO541G3863' => 'pso', 'PSO675G0507' => 'pso', 'PSO782G0338' => 'pso', 'PSO832G0644' => 'pso', 'QL01p013664' => 'qlo', 'QL01p036598' => 'qlo', 'QL05p072984' => 'qlo', 'QL08p005768' => 'qlo', 'QL08p032743' => 'qlo', 'QL93p0073_0439' => 'qlo', 'QL93p0073_0444' => 'qlo', 'RcHm_v2.0_Chr5g0002851' => 'rch', 'RcHm_v2.0_Chr5g0055201' => 'rch', 'RcHm_v2.0_Chr5g0061191' => 'rch', 'RcHm_v2.0_Chr7g0203231' => 'rch', 'Rhsim01G0208100' => 'rsi', 'Rhsim01G0208200' => 'rsi', 'Rhsim02G0106500' => 'rsi', 'Rhsim03G0107900' => 'rsi', 'Rhsim06G0163400' => 'rsi', 'Rhsim13G0105200' => 'rsi', 'Sabra04G0006300' => 'sbr', 'Sabra04G0127000' => 'sbr', 'Sabra08G0148700' => 'sbr', 'Sabra09G0117400' => 'sbr', 'SalBow1G3326' => 'sbo', 'SalBow3G3228' => 'sbo', 'SalBow6G1634' => 'sbo', 'SalBow6G3603' => 'sbo', 'SalBow6G5266' => 'sbo', 'SalBow7G2265' => 'sbo', 'SalBow8G0850' => 'sbo', 'SalBow8G2592' => 'sbo', 'Sc05g0009240' => 'sci', 'Sc12g0002300' => 'sci', 'Sc21g0000100' => 'sci', 'Sc21g0004720' => 'sci', 'Sed0002949' => 'sed', 'Sed0004114' => 'sed', 'Sed0004306' => 'sed', 'Sed0006172' => 'sed', 'Sed0008413' => 'sed', 'Sed0013809' => 'sed', 'Sed0019556' => 'sed', 'SEGI_03570' => 'sgi', 'SEGI_07859' => 'sgi', 'SEGI_15042' => 'sgi', 'SEGI_16263' => 'sgi', 'SEGI_16552' => 'sgi', 'SEGI_24331' => 'sgi', 'SEGI_27316' => 'sgi', 'SEGI_29521' => 'sgi', 'SEGI_41342' => 'sgi', 'SGA_v2.0_scaffold27G11617' => 'sas', 'SGA_v2.0_scaffold316G48428' => 'sas', 'SGA_v2.0_scaffold49G18261' => 'sas', 'SGA_v2.0_scaffold7G03831' => 'sas', 'SGA_v2.0_scaffold93G28359' => 'sas', 'SHI02210' => 'shi', 'SHI06028' => 'shi', 'SHI06321' => 'shi', 'SMO111G0012' => 'smo', 'SMO228G0080' => 'smo', 'SMO356G0756' => 'smo', 'Solyc02g080620.3' => 'sly', 'Solyc06g074530.1' => 'sly', 'Solyc11g066890.1' => 'sly', 'Solyc11g072520.3' => 'sly', 'Sopen02g025330' => 'spe', 'Sopen06g031000' => 'spe', 'Sopen09g008240' => 'spe', 'Sopen09g025210' => 'spe', 'Sopen11g026600' => 'spe', 'Sopen11g030170' => 'spe', 'Sp1g10420' => 'spa', 'Sp3g06570' => 'spa', 'Sp4g10660' => 'spa', 'Sp5g16460' => 'spa', 'Sp6g22710' => 'spa', 'TAR365G0112' => 'tar', 'TAR369G0717' => 'tar', 'TAR374G0976' => 'tar', 'TAR623G1128' => 'tar', 'TAR626G1937' => 'tar', 'TAR627G0123' => 'tar', 'TAR628G0305' => 'tar', 'TAR636G1176' => 'tar', 'TAR636G2442' => 'tar', 'THA.LOC104800556' => 'tha', 'THA.LOC104809501' => 'tha', 'THA.LOC104815126' => 'tha', 'THA.LOC104815732' => 'tha', 'THA.LOC104823528' => 'tha', 'Thecc.02G365600' => 'tca', 'Thecc.06G222300' => 'tca', 'Thecc.09G261800' => 'tca', 'Thecc.09G291400' => 'tca', 'Thhalv10003028m.g' => 'esa', 'Thhalv10007886m.g' => 'esa', 'Thhalv10016085m.g' => 'esa', 'Thhalv10016681m.g' => 'esa', 'Thhalv10020951m.g' => 'esa', 'TPR.G15598' => 'tpr', 'TPR.G29305' => 'tpr', 'TPR.G32395' => 'tpr', 'TPR.G36998' => 'tpr', 'TPR.G4227' => 'tpr', 'TWI18G1433' => 'twi', 'TWI31G0755' => 'twi', 'TWI38G0912' => 'twi', 'TWI75G1097' => 'twi', 'TWI75G1619' => 'twi', 'TWI79G1336' => 'twi', 'unitig_0.g943' => 'ugi', 'unitig_0.g944' => 'ugi', 'unitig_22.g6646' => 'ugi', 'unitig_37.g12681' => 'ugi', 'unitig_8.g3290' => 'ugi', 'vmacro03278' => 'vma', 'vmacro12197' => 'vma', 'vmacro14478' => 'vma', 'vmacro15787' => 'vma', 'vmacro15789' => 'vma', 'vmacro15790' => 'vma', 'vmacro15806' => 'vma', 'vmacro22907' => 'vma', 'vmacro22908' => 'vma', 'vmacro22909' => 'vma', 'vmacro23108' => 'vma', 'VMungo0540G0540' => 'vmu', 'VMungo0540G2468' => 'vmu', 'VMungo1080G0390' => 'vmu', 'VMungo1080G1165' => 'vmu', 'VMungo1127G0170' => 'vmu', 'VMungo1127G2099' => 'vmu', 'VMungo1215G3013' => 'vmu', 'Zm00001eb013110' => 'zma', 'Zm00001eb084260' => 'zma', 'Zm00001eb096110' => 'zma', 'Zm00001eb217510' => 'zma', 'Zm00001eb322550' => 'zma', 'Zm00001eb390770' => 'zma', 'Zm00001eb397170' => 'zma', 'Zm00001eb404610' => 'zma', 'Zm00001eb421790' => 'zma' ), 'gf_id' => 'HOM05D000911', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000911' ), 'data_identifier' => 'HOM05D000911', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000911', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27780' => 'bna', 'A03p35380' => 'bna', 'A04p21160' => 'bna', 'A05p40570' => 'bna', 'A06p26900' => 'bna', 'A08p33230' => 'bna', 'A09p65960' => 'bna', 'A10p18290' => 'bna', 'Aa31LG1G12990' => 'aar', 'Aa31LG1G2980' => 'aar', 'Aa31LG4G14320' => 'aar', 'Aa31LG7G11800' => 'aar', 'Aa31sc36G50' => 'aar', 'Aa31sc36G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3721' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5459' => 'aag', 'Actinidia03028' => 'ach', 'Actinidia03753' => 'ach', 'Actinidia04187' => 'ach', 'Actinidia05509' => 'ach', 'Actinidia24180' => 'ach', 'Actinidia26906' => 'ach', 'Actinidia37097' => 'ach', 'Actinidia38249' => 'ach', 'Ah.01g003470' => 'amhyb', 'Ah.01g004580' => 'amhyb', 'Ah.01g014850' => 'amhyb', 'Ah.01g016830' => 'amhyb', 'Ah.14g088000' => 'amhyb', 'AL1G22980' => 'aly', 'AL3G18990' => 'aly', 'AL4G22440' => 'aly', 'AL4G33180' => 'aly', 'AL5G22920' => 'aly', 'AL6G33660' => 'aly', 'AL8G20720' => 'aly', 'Aqoxy1G00935' => 'aox', 'Aqoxy1G02094' => 'aox', 'Aqoxy2G01239' => 'aox', 'Aqoxy4G01870' => 'aox', 'Aqoxy7G00450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.36ZVTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71EM27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5D6C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH3WRE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3NCM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RIM768' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YB5YRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z36GDV' => 'arhy', 'AT1G08250' => 'ath', 'AT1G11790' => 'ath', 'AT2G27820' => 'ath', 'AT3G07630' => 'ath', 'AT3G44720' => 'ath', 'AT5G22630' => 'ath', 'ATR0693G304' => 'atr', 'ATR0794G109' => 'atr', 'ATR0820G120' => 'atr', 'ATR1159G064' => 'atr', 'Atru.chr10.2239' => 'acertr', 'Atru.chr3.3371' => 'acertr', 'Atru.chr6.3202' => 'acertr', 'AUR62006499' => 'cqu', 'AUR62012718' => 'cqu', 'AUR62021938' => 'cqu', 'AUR62023932' => 'cqu', 'AUR62025034' => 'cqu', 'AUR62025035' => 'cqu', 'AUR62038307' => 'cqu', 'AUR62043466' => 'cqu', 'BcaB02g10748' => 'bca', 'BcaB03g13231' => 'bca', 'BcaB03g14689' => 'bca', 'BcaB05g22716' => 'bca', 'BcaB06g28172' => 'bca', 'BcaB08g36413' => 'bca', 'BcaC01g02186' => 'bca', 'BcaC01g04272' => 'bca', 'BcaC02g08080' => 'bca', 'BcaC02g08227' => 'bca', 'BcaC03g13901' => 'bca', 'BcaC04g19593' => 'bca', 'BcaC04g20874' => 'bca', 'BcaC05g29557' => 'bca', 'BcaC06g35505' => 'bca', 'BcaC07g41954' => 'bca', 'BcaC07g41955' => 'bca', 'BcaC07g41956' => 'bca', 'BcaC07g42519' => 'bca', 'BcaC07g42520' => 'bca', 'BcaC07g42523' => 'bca', 'BcaC07g42524' => 'bca', 'BcaC07g42525' => 'bca', 'BcaC08g47480' => 'bca', 'BcaC08g47481' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00530' => 'bna', 'BolC2t07178H' => 'bol', 'BolC3t16567H' => 'bol', 'BolC4t27234H' => 'bol', 'BolC5t29728H' => 'bol', 'BolC5t34622H' => 'bol', 'BolC6t40321H' => 'bol', 'BolC7t42028H' => 'bol', 'BolC8t49125H' => 'bol', 'BolC8t52538H' => 'bol', 'BolC8t52539H' => 'bol', 'BolC9t56681H' => 'bol', 'BolC9t58266H' => 'bol', 'BolSC21t60294H' => 'bol', 'BraA02t05670Z' => 'bra', 'BraA03t12716Z' => 'bra', 'BraA04t17685Z' => 'bra', 'BraA05t22788Z' => 'bra', 'BraA06t24032Z' => 'bra', 'BraA06t25625Z' => 'bra', 'BraA07t27930Z' => 'bra', 'BraA08t35242Z' => 'bra', 'BraA09t38609Z' => 'bra', 'BraA10t43905Z' => 'bra', 'C02p11060' => 'bna', 'C03p42990' => 'bna', 'C03p67310' => 'bna', 'C04p56990' => 'bna', 'C04p58660' => 'bna', 'C05p09890' => 'bna', 'C05p59680' => 'bna', 'C06p19830' => 'bna', 'C06p53040' => 'bna', 'C07p15230' => 'bna', 'C08p50070' => 'bna', 'C08p50090' => 'bna', 'C09p38330' => 'bna', 'C09p53940' => 'bna', 'CAN.G1014.1' => 'can', 'CAN.G644.30' => 'can', 'CAN.G84.47' => 'can', 'CAN.G919.8' => 'can', 'CANSAT54G0113' => 'cansat', 'CANSAT54G1286' => 'cansat', 'CANSAT64G1020' => 'cansat', 'CARHR008080' => 'chi', 'CARHR008090' => 'chi', 'CARHR012130' => 'chi', 'CARHR038390' => 'chi', 'CARHR082330' => 'chi', 'CARHR120520' => 'chi', 'CARHR151470' => 'chi', 'CARHR190950' => 'chi', 'Carub.0001s0760' => 'cru', 'Carub.0001s1146' => 'cru', 'Carub.0003s0721' => 'cru', 'Carub.0004s0858' => 'cru', 'Carub.0005s1040' => 'cru', 'Carub.0006s2035' => 'cru', 'Carub.0015s0005' => 'cru', 'Ca_01607_v3' => 'car', 'Ca_01677_v3' => 'car', 'Ca_06087_v3' => 'car', 'Ca_19238_v3' => 'car', 'Ca_19373_v3' => 'car', 'Ca_21079_v3' => 'car', 'CBR_g54016' => 'cbr', 'CBR_g54018' => 'cbr', 'CBR_g54020' => 'cbr', 'Cc01_g09780' => 'ccan', 'Cc01_g11680' => 'ccan', 'Cc02_g15610' => 'ccan', 'Cc05_g04350' => 'ccan', 'Cc09_g01580' => 'ccan', 'CDE01G0795' => 'cde', 'CDE02G2024' => 'cde', 'CDE02G2260' => 'cde', 'CDE02G4561' => 'cde', 'CDE05G2733' => 'cde', 'CDE05G3422' => 'cde', 'CDE06G2003' => 'cde', 'CDE08G0576' => 'cde', 'CDE09G0048' => 'cde', 'CDE11G0805' => 'cde', 'Cfa003644' => 'cfa', 'Cfa006290' => 'cfa', 'Cfa010080' => 'cfa', 'Cfa011376' => 'cfa', 'Cfa011576' => 'cfa', 'Cfa011577' => 'cfa', 'Cfa014389' => 'cfa', 'Ciclev10006044m.g' => 'ccl', 'Ciclev10006954m.g' => 'ccl', 'Ciclev10015131m.g' => 'ccl', 'Ciclev10015580m.g' => 'ccl', 'Ciclev10028359m.g' => 'ccl', 'Ciclev10028573m.g' => 'ccl', 'CiPaw.03G159300' => 'cil', 'CiPaw.04G115100' => 'cil', 'CiPaw.09G092800' => 'cil', 'CiPaw.10G071800' => 'cil', 'CiPaw.13G105800' => 'cil', 'CiPaw.13G141000' => 'cil', 'CiPaw.14G103400' => 'cil', 'ClCG01G012700' => 'cla', 'ClCG01G012720' => 'cla', 'ClCG01G021920' => 'cla', 'ClCG02G008870' => 'cla', 'ClCG02G020840' => 'cla', 'ClCG02G021930' => 'cla', 'COL.COLO4_19302' => 'col', 'COL.COLO4_25262' => 'col', 'COL.COLO4_31788' => 'col', 'Cpa.g.c34684' => 'cpa', 'Cpa.g.c36520.1' => 'cpa', 'Cpa.g.c45626' => 'cpa', 'Cpa.g.sc121.17' => 'cpa', 'Cpa.g.sc13.22' => 'cpa', 'Cpa.g.sc87.88' => 'cpa', 'Cre06.g261800' => 'cre', 'CsaV3_1G014500' => 'csa', 'CsaV3_1G014510' => 'csa', 'CsaV3_2G034880' => 'csa', 'CsaV3_6G014760' => 'csa', 'CsaV3_6G021500' => 'csa', 'CsaV3_6G048980' => 'csa', 'CSS0002511' => 'camsi', 'CSS0007556' => 'camsi', 'CSS0008532' => 'camsi', 'CSS0009709' => 'camsi', 'CSS0010486' => 'camsi', 'CSS0016768' => 'camsi', 'CSS0023512' => 'camsi', 'CSS0025341' => 'camsi', 'CSS0027999' => 'camsi', 'CSS0028944' => 'camsi', 'CSS0032292' => 'camsi', 'CSS0032464' => 'camsi', 'CSS0037153' => 'camsi', 'CSS0039256' => 'camsi', 'CSS0048392' => 'camsi', 'CSS0050458' => 'camsi', 'DCAR_004224' => 'dca', 'DCAR_006147' => 'dca', 'DCAR_006465' => 'dca', 'DCAR_008159' => 'dca', 'DCAR_012164' => 'dca', 'DCAR_019764' => 'dca', 'Dinv05418' => 'din', 'Dinv10839' => 'din', 'Dinv12521' => 'din', 'Dinv13900' => 'din', 'Dinv29426' => 'din', 'Duzib150G0263' => 'dzi', 'Duzib168G1178' => 'dzi', 'Duzib168G1924' => 'dzi', 'Duzib170G0299' => 'dzi', 'Duzib170G0813' => 'dzi', 'Duzib235G1128' => 'dzi', 'Duzib248G1060' => 'dzi', 'ECA232G1910' => 'eca', 'ECA233G4621' => 'eca', 'ECA238G1216' => 'eca', 'ECA238G1784' => 'eca', 'ECA248G1242' => 'eca', 'EL10Ac8g20071' => 'bvu', 'EL10Ac9g21086' => 'bvu', 'EL10Ac9g22407' => 'bvu', 'EL10Ac9g22412' => 'bvu', 'Eucgr.A01119' => 'egr', 'Eucgr.E04043' => 'egr', 'Eucgr.J00428' => 'egr', 'Eucgr.J00958' => 'egr', 'FAN11G3091' => 'fan', 'FAN11G3651' => 'fan', 'FAN16G2566' => 'fan', 'FAN21G3155' => 'fan', 'FAN21G3400' => 'fan', 'FAN21G3543' => 'fan', 'FAN25G0234' => 'fan', 'FAN25G1422' => 'fan', 'FAN25G3392' => 'fan', 'FvH4_3g01940' => 'fve', 'FvH4_3g29870' => 'fve', 'FvH4_3g33680' => 'fve', 'Glyma.09G004200' => 'gma', 'Glyma.11G151288' => 'gma', 'Glyma.11G189100' => 'gma', 'Glyma.12G072500' => 'gma', 'Glyma.12G085500' => 'gma', 'Glyma.12G181800' => 'gma', 'Glyma.12G193000' => 'gma', 'Glyma.13G309300' => 'gma', 'Glyma.13G319000' => 'gma', 'Glyma.17G012600' => 'gma', 'Gohir.A06G148600' => 'ghi', 'Gohir.A07G115800' => 'ghi', 'Gohir.A08G003600' => 'ghi', 'Gohir.A09G093300' => 'ghi', 'Gohir.A09G105400' => 'ghi', 'Gohir.A09G105500' => 'ghi', 'Gohir.D06G154600' => 'ghi', 'Gohir.D07G120200' => 'ghi', 'Gohir.D08G013900' => 'ghi', 'Gohir.D09G093100' => 'ghi', 'Gohir.D09G102200' => 'ghi', 'Gohir.D09G102300' => 'ghi', 'Gorai.001G129400' => 'gra', 'Gorai.004G008200' => 'gra', 'Gorai.006G109800' => 'gra', 'Gorai.006G119500' => 'gra', 'Gorai.006G121300' => 'gra', 'Gorai.010G180700' => 'gra', 'GSVIVG01012716001' => 'vvi', 'GSVIVG01025118001' => 'vvi', 'GSVIVG01030439001' => 'vvi', 'GSVIVG01031397001' => 'vvi', 'HanXRQChr01g0004201' => 'han', 'HanXRQChr02g0054941' => 'han', 'HanXRQChr05g0141811' => 'han', 'HanXRQChr07g0197751' => 'han', 'HanXRQChr11g0346691' => 'han', 'HanXRQChr13g0396971' => 'han', 'HanXRQChr14g0432951' => 'han', 'HanXRQChr14g0452001' => 'han', 'HanXRQChr15g0496681' => 'han', 'HanXRQChr17g0557491' => 'han', 'HanXRQChr17g0557501' => 'han', 'Haze_06809' => 'cav', 'Haze_12852' => 'cav', 'Haze_15850' => 'cav', 'Haze_23446' => 'cav', 'Haze_23942' => 'cav', 'Haze_23943' => 'cav', 'Hma1.2p1_0091F.1_g046450' => 'hma', 'Hma1.2p1_0128F.1_g059910' => 'hma', 'Hma1.2p1_0249F.1_g102260' => 'hma', 'Hma1.2p1_0453F.1_g156190' => 'hma', 'Hma1.2p1_0695F.1_g204380' => 'hma', 'Hma1.2p1_0749F.1_g212650' => 'hma', 'Hma1.2p1_2156F.1_g315420' => 'hma', 'Hma1.2p1_2686F.1_g326940' => 'hma', 'HPP92_006428' => 'vpl', 'HPP92_012069' => 'vpl', 'HPP92_014129' => 'vpl', 'HPP92_014133' => 'vpl', 'HPP92_017315' => 'vpl', 'HPP92_026445' => 'vpl', 'HPP92_026446' => 'vpl', 'Hund00774' => 'sun', 'Hund07682' => 'sun', 'Hund21413' => 'sun', 'Hund23462' => 'sun', 'Hund23463' => 'sun', 'Lalb_Chr03g0027911' => 'lal', 'Lalb_Chr13g0304271' => 'lal', 'Lalb_Chr19g0137471' => 'lal', 'Lalb_Chr22g0350651' => 'lal', 'Lalb_Chr24g0395151' => 'lal', 'Lj1A1231T40' => 'lonja', 'Lj1A221T48' => 'lonja', 'Lj1C924T12' => 'lonja', 'Lj2C993G6' => 'lonja', 'Lj3g0005790' => 'lja', 'Lj3g0015432' => 'lja', 'Lj3g0017722' => 'lja', 'Lj3g0018497' => 'lja', 'Lj4g0025071' => 'lja', 'Lsat_1_v5_gn_1_129680' => 'lsa', 'Lsat_1_v5_gn_2_25321' => 'lsa', 'Lsat_1_v5_gn_2_95461' => 'lsa', 'Lsat_1_v5_gn_4_159620' => 'lsa', 'Lsat_1_v5_gn_6_41301' => 'lsa', 'Lsat_1_v5_gn_6_74660' => 'lsa', 'Lsat_1_v5_gn_7_11520' => 'lsa', 'Lsat_1_v5_gn_9_67680' => 'lsa', 'Manes.04G008300' => 'mes', 'Manes.04G008400' => 'mes', 'Manes.04G026500' => 'mes', 'Manes.10G135300' => 'mes', 'Manes.11G157300' => 'mes', 'Manes.12G074000' => 'mes', 'Manes.16G006200' => 'mes', 'Manes.17G026400' => 'mes', 'Mapoly0024s0086' => 'mpo', 'Mapoly0024s0087' => 'mpo', 'Mapoly0071s0057' => 'mpo', 'Mapoly0204s0012' => 'mpo', 'MBI04_g37681_MAGBIO' => 'mbi', 'MBI05_g17779_MAGBIO' => 'mbi', 'MBI12_g31184_MAGBIO' => 'mbi', 'MBI17_g11083_MAGBIO' => 'mbi', 'MBI18_g03883_MAGBIO' => 'mbi', 'MBI18_g28940_MAGBIO' => 'mbi', 'MCO01G690' => 'mco', 'MD03G1109900' => 'mdo', 'MD03G1134800' => 'mdo', 'MD05G1348000' => 'mdo', 'MD10G1322400' => 'mdo', 'MD11G1123300' => 'mdo', 'MD11G1157600' => 'mdo', 'Medtr2g084875' => 'mtr', 'Medtr2g088130' => 'mtr', 'Medtr4g055310' => 'mtr', 'Medtr4g061070' => 'mtr', 'Medtr4g132250' => 'mtr', 'MELO3C004795.2' => 'cme', 'MELO3C004797.2' => 'cme', 'MELO3C007396.2' => 'cme', 'MELO3C019277.2' => 'cme', 'MELO3C021449.2' => 'cme', 'MELO3C025736.2' => 'cme', 'Migut.D02175' => 'egut', 'Migut.H01573' => 'egut', 'Migut.M01327' => 'egut', 'Migut.N02513' => 'egut', 'MSTRG.14638' => 'ama', 'MSTRG.18632' => 'ama', 'MSTRG.7203' => 'ama', 'Nitab4.5_0000533g0140' => 'nta', 'Nitab4.5_0000888g0150' => 'nta', 'Nitab4.5_0001453g0040' => 'nta', 'Nitab4.5_0002827g0090' => 'nta', 'Nitab4.5_0003082g0040' => 'nta', 'Nitab4.5_0007799g0040' => 'nta', 'Nitab4.5_0008983g0010' => 'nta', 'Nitab4.5_0009017g0020' => 'nta', 'Nn1g02132' => 'nnu', 'Nn1g03492' => 'nnu', 'Nn1g03493' => 'nnu', 'Nn1g03494' => 'nnu', 'Nn1g07164' => 'nnu', 'Nn1g07291' => 'nnu', 'Nn2g10655' => 'nnu', 'Nn2g11652' => 'nnu', 'Nn2g14008' => 'nnu', 'Nn3g17476' => 'nnu', 'Nn3g17477' => 'nnu', 'Nn4g22370' => 'nnu', 'Nn4g25255' => 'nnu', 'Nn5g27755' => 'nnu', 'Nn6g34260' => 'nnu', 'Nn6g35041' => 'nnu', 'Oeu005924.1' => 'oeu', 'Oeu008383.1' => 'oeu', 'Oeu014928.1' => 'oeu', 'Oeu019889.1' => 'oeu', 'Oeu022271.1' => 'oeu', 'Oeu025271.1' => 'oeu', 'Oeu036302.1' => 'oeu', 'Oeu044100.1' => 'oeu', 'Os01g0528300' => 'osa', 'Os03g0286200' => 'osa', 'Os04g0406600' => 'osa', 'Os07g0512000' => 'osa', 'Os07g0694600' => 'osa', 'Os08g0411000' => 'osa', 'Os09g0565700' => 'osa', 'Os09g0566050' => 'osa', 'Os10g0523700' => 'osa', 'Peaxi162Scf00002g00514' => 'pax', 'Peaxi162Scf00047g01817' => 'pax', 'Peaxi162Scf00114g00001' => 'pax', 'Peaxi162Scf00147g00613' => 'pax', 'Peaxi162Scf00389g00425' => 'pax', 'PGR042G1139' => 'pgr', 'PGR042G3273' => 'pgr', 'PGR102G2180' => 'pgr', 'PGR119G0234' => 'pgr', 'PGR119G0668' => 'pgr', 'PGSC0003DMG400007122' => 'stu', 'PGSC0003DMG400016478' => 'stu', 'PGSC0003DMG400025374' => 'stu', 'PGSC0003DMG400026536' => 'stu', 'Phvul.003G079600' => 'pvu', 'Phvul.005G115600' => 'pvu', 'Phvul.005G127100' => 'pvu', 'Phvul.006G149500' => 'pvu', 'Phvul.006G149600' => 'pvu', 'Phvul.011G071800' => 'pvu', 'Phvul.011G090400' => 'pvu', 'Potri.004G013400' => 'ptr', 'Potri.004G188100' => 'ptr', 'Potri.008G195500' => 'ptr', 'Potri.009G148800' => 'ptr', 'Potri.011G004700' => 'ptr', 'Pp3c17_22810' => 'ppa', 'Pp3c18_4480' => 'ppa', 'Pp3c19_13030' => 'ppa', 'Pp3c1_33620' => 'ppa', 'Pp3c2_9380' => 'ppa', 'PRCOL_00001023' => 'pco', 'Prupe.3G216300' => 'ppe', 'Prupe.4G019500' => 'ppe', 'Prupe.6G092500' => 'ppe', 'Prupe.6G119200' => 'ppe', 'Psat0s1945g0080' => 'psa', 'Psat0s4167g0040' => 'psa', 'Psat1g185800' => 'psa', 'Psat4g006440' => 'psa', 'Psat4g006480' => 'psa', 'Psat4g168120' => 'psa', 'Psat5g255680' => 'psa', 'Psat5g261760' => 'psa', 'Psat7g222120' => 'psa', 'PSO063G7252' => 'pso', 'PSO170G4778' => 'pso', 'PSO210G2249' => 'pso', 'PSO339G2411' => 'pso', 'PSO339G2457' => 'pso', 'PSO339G2854' => 'pso', 'PSO339G4288' => 'pso', 'PSO339G4615' => 'pso', 'PSO384G2796' => 'pso', 'PSO384G2940' => 'pso', 'PSO384G4227' => 'pso', 'PSO478G1425' => 'pso', 'PSO541G3863' => 'pso', 'PSO675G0507' => 'pso', 'PSO782G0338' => 'pso', 'PSO832G0644' => 'pso', 'QL01p013664' => 'qlo', 'QL01p036598' => 'qlo', 'QL05p072984' => 'qlo', 'QL08p005768' => 'qlo', 'QL08p032743' => 'qlo', 'QL93p0073_0439' => 'qlo', 'QL93p0073_0444' => 'qlo', 'RcHm_v2.0_Chr5g0002851' => 'rch', 'RcHm_v2.0_Chr5g0055201' => 'rch', 'RcHm_v2.0_Chr5g0061191' => 'rch', 'RcHm_v2.0_Chr7g0203231' => 'rch', 'Rhsim01G0208100' => 'rsi', 'Rhsim01G0208200' => 'rsi', 'Rhsim02G0106500' => 'rsi', 'Rhsim03G0107900' => 'rsi', 'Rhsim06G0163400' => 'rsi', 'Rhsim13G0105200' => 'rsi', 'Sabra04G0006300' => 'sbr', 'Sabra04G0127000' => 'sbr', 'Sabra08G0148700' => 'sbr', 'Sabra09G0117400' => 'sbr', 'SalBow1G3326' => 'sbo', 'SalBow3G3228' => 'sbo', 'SalBow6G1634' => 'sbo', 'SalBow6G3603' => 'sbo', 'SalBow6G5266' => 'sbo', 'SalBow7G2265' => 'sbo', 'SalBow8G0850' => 'sbo', 'SalBow8G2592' => 'sbo', 'Sc05g0009240' => 'sci', 'Sc12g0002300' => 'sci', 'Sc21g0000100' => 'sci', 'Sc21g0004720' => 'sci', 'Sed0002949' => 'sed', 'Sed0004114' => 'sed', 'Sed0004306' => 'sed', 'Sed0006172' => 'sed', 'Sed0008413' => 'sed', 'Sed0013809' => 'sed', 'Sed0019556' => 'sed', 'SEGI_03570' => 'sgi', 'SEGI_07859' => 'sgi', 'SEGI_15042' => 'sgi', 'SEGI_16263' => 'sgi', 'SEGI_16552' => 'sgi', 'SEGI_24331' => 'sgi', 'SEGI_27316' => 'sgi', 'SEGI_29521' => 'sgi', 'SEGI_41342' => 'sgi', 'SGA_v2.0_scaffold27G11617' => 'sas', 'SGA_v2.0_scaffold316G48428' => 'sas', 'SGA_v2.0_scaffold49G18261' => 'sas', 'SGA_v2.0_scaffold7G03831' => 'sas', 'SGA_v2.0_scaffold93G28359' => 'sas', 'SHI02210' => 'shi', 'SHI06028' => 'shi', 'SHI06321' => 'shi', 'SMO111G0012' => 'smo', 'SMO228G0080' => 'smo', 'SMO356G0756' => 'smo', 'Solyc02g080620.3' => 'sly', 'Solyc06g074530.1' => 'sly', 'Solyc11g066890.1' => 'sly', 'Solyc11g072520.3' => 'sly', 'Sopen02g025330' => 'spe', 'Sopen06g031000' => 'spe', 'Sopen09g008240' => 'spe', 'Sopen09g025210' => 'spe', 'Sopen11g026600' => 'spe', 'Sopen11g030170' => 'spe', 'Sp1g10420' => 'spa', 'Sp3g06570' => 'spa', 'Sp4g10660' => 'spa', 'Sp5g16460' => 'spa', 'Sp6g22710' => 'spa', 'TAR365G0112' => 'tar', 'TAR369G0717' => 'tar', 'TAR374G0976' => 'tar', 'TAR623G1128' => 'tar', 'TAR626G1937' => 'tar', 'TAR627G0123' => 'tar', 'TAR628G0305' => 'tar', 'TAR636G1176' => 'tar', 'TAR636G2442' => 'tar', 'THA.LOC104800556' => 'tha', 'THA.LOC104809501' => 'tha', 'THA.LOC104815126' => 'tha', 'THA.LOC104815732' => 'tha', 'THA.LOC104823528' => 'tha', 'Thecc.02G365600' => 'tca', 'Thecc.06G222300' => 'tca', 'Thecc.09G261800' => 'tca', 'Thecc.09G291400' => 'tca', 'Thhalv10003028m.g' => 'esa', 'Thhalv10007886m.g' => 'esa', 'Thhalv10016085m.g' => 'esa', 'Thhalv10016681m.g' => 'esa', 'Thhalv10020951m.g' => 'esa', 'TPR.G15598' => 'tpr', 'TPR.G29305' => 'tpr', 'TPR.G32395' => 'tpr', 'TPR.G36998' => 'tpr', 'TPR.G4227' => 'tpr', 'TWI18G1433' => 'twi', 'TWI31G0755' => 'twi', 'TWI38G0912' => 'twi', 'TWI75G1097' => 'twi', 'TWI75G1619' => 'twi', 'TWI79G1336' => 'twi', 'unitig_0.g943' => 'ugi', 'unitig_0.g944' => 'ugi', 'unitig_22.g6646' => 'ugi', 'unitig_37.g12681' => 'ugi', 'unitig_8.g3290' => 'ugi', 'vmacro03278' => 'vma', 'vmacro12197' => 'vma', 'vmacro14478' => 'vma', 'vmacro15787' => 'vma', 'vmacro15789' => 'vma', 'vmacro15790' => 'vma', 'vmacro15806' => 'vma', 'vmacro22907' => 'vma', 'vmacro22908' => 'vma', 'vmacro22909' => 'vma', 'vmacro23108' => 'vma', 'VMungo0540G0540' => 'vmu', 'VMungo0540G2468' => 'vmu', 'VMungo1080G0390' => 'vmu', 'VMungo1080G1165' => 'vmu', 'VMungo1127G0170' => 'vmu', 'VMungo1127G2099' => 'vmu', 'VMungo1215G3013' => 'vmu', 'Zm00001eb013110' => 'zma', 'Zm00001eb084260' => 'zma', 'Zm00001eb096110' => 'zma', 'Zm00001eb217510' => 'zma', 'Zm00001eb322550' => 'zma', 'Zm00001eb390770' => 'zma', 'Zm00001eb397170' => 'zma', 'Zm00001eb404610' => 'zma', 'Zm00001eb421790' => 'zma' ) $gf_id = 'HOM05D000911' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000911' ) $data_identifier = 'HOM05D000911' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 16, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 5, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 6, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 8, 'nnu' => (int) 16, 'oeu' => (int) 8, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 5, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 16, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421790' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000911', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27780' => 'bna', 'A03p35380' => 'bna', 'A04p21160' => 'bna', 'A05p40570' => 'bna', 'A06p26900' => 'bna', 'A08p33230' => 'bna', 'A09p65960' => 'bna', 'A10p18290' => 'bna', 'Aa31LG1G12990' => 'aar', 'Aa31LG1G2980' => 'aar', 'Aa31LG4G14320' => 'aar', 'Aa31LG7G11800' => 'aar', 'Aa31sc36G50' => 'aar', 'Aa31sc36G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3721' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5459' => 'aag', 'Actinidia03028' => 'ach', 'Actinidia03753' => 'ach', 'Actinidia04187' => 'ach', 'Actinidia05509' => 'ach', 'Actinidia24180' => 'ach', 'Actinidia26906' => 'ach', 'Actinidia37097' => 'ach', 'Actinidia38249' => 'ach', 'Ah.01g003470' => 'amhyb', 'Ah.01g004580' => 'amhyb', 'Ah.01g014850' => 'amhyb', 'Ah.01g016830' => 'amhyb', 'Ah.14g088000' => 'amhyb', 'AL1G22980' => 'aly', 'AL3G18990' => 'aly', 'AL4G22440' => 'aly', 'AL4G33180' => 'aly', 'AL5G22920' => 'aly', 'AL6G33660' => 'aly', 'AL8G20720' => 'aly', 'Aqoxy1G00935' => 'aox', 'Aqoxy1G02094' => 'aox', 'Aqoxy2G01239' => 'aox', 'Aqoxy4G01870' => 'aox', 'Aqoxy7G00450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.36ZVTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71EM27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5D6C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH3WRE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3NCM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RIM768' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YB5YRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z36GDV' => 'arhy', 'AT1G08250' => 'ath', 'AT1G11790' => 'ath', 'AT2G27820' => 'ath', 'AT3G07630' => 'ath', 'AT3G44720' => 'ath', 'AT5G22630' => 'ath', 'ATR0693G304' => 'atr', 'ATR0794G109' => 'atr', 'ATR0820G120' => 'atr', 'ATR1159G064' => 'atr', 'Atru.chr10.2239' => 'acertr', 'Atru.chr3.3371' => 'acertr', 'Atru.chr6.3202' => 'acertr', 'AUR62006499' => 'cqu', 'AUR62012718' => 'cqu', 'AUR62021938' => 'cqu', 'AUR62023932' => 'cqu', 'AUR62025034' => 'cqu', 'AUR62025035' => 'cqu', 'AUR62038307' => 'cqu', 'AUR62043466' => 'cqu', 'BcaB02g10748' => 'bca', 'BcaB03g13231' => 'bca', 'BcaB03g14689' => 'bca', 'BcaB05g22716' => 'bca', 'BcaB06g28172' => 'bca', 'BcaB08g36413' => 'bca', 'BcaC01g02186' => 'bca', 'BcaC01g04272' => 'bca', 'BcaC02g08080' => 'bca', 'BcaC02g08227' => 'bca', 'BcaC03g13901' => 'bca', 'BcaC04g19593' => 'bca', 'BcaC04g20874' => 'bca', 'BcaC05g29557' => 'bca', 'BcaC06g35505' => 'bca', 'BcaC07g41954' => 'bca', 'BcaC07g41955' => 'bca', 'BcaC07g41956' => 'bca', 'BcaC07g42519' => 'bca', 'BcaC07g42520' => 'bca', 'BcaC07g42523' => 'bca', 'BcaC07g42524' => 'bca', 'BcaC07g42525' => 'bca', 'BcaC08g47480' => 'bca', 'BcaC08g47481' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00530' => 'bna', 'BolC2t07178H' => 'bol', 'BolC3t16567H' => 'bol', 'BolC4t27234H' => 'bol', 'BolC5t29728H' => 'bol', 'BolC5t34622H' => 'bol', 'BolC6t40321H' => 'bol', 'BolC7t42028H' => 'bol', 'BolC8t49125H' => 'bol', 'BolC8t52538H' => 'bol', 'BolC8t52539H' => 'bol', 'BolC9t56681H' => 'bol', 'BolC9t58266H' => 'bol', 'BolSC21t60294H' => 'bol', 'BraA02t05670Z' => 'bra', 'BraA03t12716Z' => 'bra', 'BraA04t17685Z' => 'bra', 'BraA05t22788Z' => 'bra', 'BraA06t24032Z' => 'bra', 'BraA06t25625Z' => 'bra', 'BraA07t27930Z' => 'bra', 'BraA08t35242Z' => 'bra', 'BraA09t38609Z' => 'bra', 'BraA10t43905Z' => 'bra', 'C02p11060' => 'bna', 'C03p42990' => 'bna', 'C03p67310' => 'bna', 'C04p56990' => 'bna', 'C04p58660' => 'bna', 'C05p09890' => 'bna', 'C05p59680' => 'bna', 'C06p19830' => 'bna', 'C06p53040' => 'bna', 'C07p15230' => 'bna', 'C08p50070' => 'bna', 'C08p50090' => 'bna', 'C09p38330' => 'bna', 'C09p53940' => 'bna', 'CAN.G1014.1' => 'can', 'CAN.G644.30' => 'can', 'CAN.G84.47' => 'can', 'CAN.G919.8' => 'can', 'CANSAT54G0113' => 'cansat', 'CANSAT54G1286' => 'cansat', 'CANSAT64G1020' => 'cansat', 'CARHR008080' => 'chi', 'CARHR008090' => 'chi', 'CARHR012130' => 'chi', 'CARHR038390' => 'chi', 'CARHR082330' => 'chi', 'CARHR120520' => 'chi', 'CARHR151470' => 'chi', 'CARHR190950' => 'chi', 'Carub.0001s0760' => 'cru', 'Carub.0001s1146' => 'cru', 'Carub.0003s0721' => 'cru', 'Carub.0004s0858' => 'cru', 'Carub.0005s1040' => 'cru', 'Carub.0006s2035' => 'cru', 'Carub.0015s0005' => 'cru', 'Ca_01607_v3' => 'car', 'Ca_01677_v3' => 'car', 'Ca_06087_v3' => 'car', 'Ca_19238_v3' => 'car', 'Ca_19373_v3' => 'car', 'Ca_21079_v3' => 'car', 'CBR_g54016' => 'cbr', 'CBR_g54018' => 'cbr', 'CBR_g54020' => 'cbr', 'Cc01_g09780' => 'ccan', 'Cc01_g11680' => 'ccan', 'Cc02_g15610' => 'ccan', 'Cc05_g04350' => 'ccan', 'Cc09_g01580' => 'ccan', 'CDE01G0795' => 'cde', 'CDE02G2024' => 'cde', 'CDE02G2260' => 'cde', 'CDE02G4561' => 'cde', 'CDE05G2733' => 'cde', 'CDE05G3422' => 'cde', 'CDE06G2003' => 'cde', 'CDE08G0576' => 'cde', 'CDE09G0048' => 'cde', 'CDE11G0805' => 'cde', 'Cfa003644' => 'cfa', 'Cfa006290' => 'cfa', 'Cfa010080' => 'cfa', 'Cfa011376' => 'cfa', 'Cfa011576' => 'cfa', 'Cfa011577' => 'cfa', 'Cfa014389' => 'cfa', 'Ciclev10006044m.g' => 'ccl', 'Ciclev10006954m.g' => 'ccl', 'Ciclev10015131m.g' => 'ccl', 'Ciclev10015580m.g' => 'ccl', 'Ciclev10028359m.g' => 'ccl', 'Ciclev10028573m.g' => 'ccl', 'CiPaw.03G159300' => 'cil', 'CiPaw.04G115100' => 'cil', 'CiPaw.09G092800' => 'cil', 'CiPaw.10G071800' => 'cil', 'CiPaw.13G105800' => 'cil', 'CiPaw.13G141000' => 'cil', 'CiPaw.14G103400' => 'cil', 'ClCG01G012700' => 'cla', 'ClCG01G012720' => 'cla', 'ClCG01G021920' => 'cla', 'ClCG02G008870' => 'cla', 'ClCG02G020840' => 'cla', 'ClCG02G021930' => 'cla', 'COL.COLO4_19302' => 'col', 'COL.COLO4_25262' => 'col', 'COL.COLO4_31788' => 'col', 'Cpa.g.c34684' => 'cpa', 'Cpa.g.c36520.1' => 'cpa', 'Cpa.g.c45626' => 'cpa', 'Cpa.g.sc121.17' => 'cpa', 'Cpa.g.sc13.22' => 'cpa', 'Cpa.g.sc87.88' => 'cpa', 'Cre06.g261800' => 'cre', 'CsaV3_1G014500' => 'csa', 'CsaV3_1G014510' => 'csa', 'CsaV3_2G034880' => 'csa', 'CsaV3_6G014760' => 'csa', 'CsaV3_6G021500' => 'csa', 'CsaV3_6G048980' => 'csa', 'CSS0002511' => 'camsi', 'CSS0007556' => 'camsi', 'CSS0008532' => 'camsi', 'CSS0009709' => 'camsi', 'CSS0010486' => 'camsi', 'CSS0016768' => 'camsi', 'CSS0023512' => 'camsi', 'CSS0025341' => 'camsi', 'CSS0027999' => 'camsi', 'CSS0028944' => 'camsi', 'CSS0032292' => 'camsi', 'CSS0032464' => 'camsi', 'CSS0037153' => 'camsi', 'CSS0039256' => 'camsi', 'CSS0048392' => 'camsi', 'CSS0050458' => 'camsi', 'DCAR_004224' => 'dca', 'DCAR_006147' => 'dca', 'DCAR_006465' => 'dca', 'DCAR_008159' => 'dca', 'DCAR_012164' => 'dca', 'DCAR_019764' => 'dca', 'Dinv05418' => 'din', 'Dinv10839' => 'din', 'Dinv12521' => 'din', 'Dinv13900' => 'din', 'Dinv29426' => 'din', 'Duzib150G0263' => 'dzi', 'Duzib168G1178' => 'dzi', 'Duzib168G1924' => 'dzi', 'Duzib170G0299' => 'dzi', 'Duzib170G0813' => 'dzi', 'Duzib235G1128' => 'dzi', 'Duzib248G1060' => 'dzi', 'ECA232G1910' => 'eca', 'ECA233G4621' => 'eca', 'ECA238G1216' => 'eca', 'ECA238G1784' => 'eca', 'ECA248G1242' => 'eca', 'EL10Ac8g20071' => 'bvu', 'EL10Ac9g21086' => 'bvu', 'EL10Ac9g22407' => 'bvu', 'EL10Ac9g22412' => 'bvu', 'Eucgr.A01119' => 'egr', 'Eucgr.E04043' => 'egr', 'Eucgr.J00428' => 'egr', 'Eucgr.J00958' => 'egr', 'FAN11G3091' => 'fan', 'FAN11G3651' => 'fan', 'FAN16G2566' => 'fan', 'FAN21G3155' => 'fan', 'FAN21G3400' => 'fan', 'FAN21G3543' => 'fan', 'FAN25G0234' => 'fan', 'FAN25G1422' => 'fan', 'FAN25G3392' => 'fan', 'FvH4_3g01940' => 'fve', 'FvH4_3g29870' => 'fve', 'FvH4_3g33680' => 'fve', 'Glyma.09G004200' => 'gma', 'Glyma.11G151288' => 'gma', 'Glyma.11G189100' => 'gma', 'Glyma.12G072500' => 'gma', 'Glyma.12G085500' => 'gma', 'Glyma.12G181800' => 'gma', 'Glyma.12G193000' => 'gma', 'Glyma.13G309300' => 'gma', 'Glyma.13G319000' => 'gma', 'Glyma.17G012600' => 'gma', 'Gohir.A06G148600' => 'ghi', 'Gohir.A07G115800' => 'ghi', 'Gohir.A08G003600' => 'ghi', 'Gohir.A09G093300' => 'ghi', 'Gohir.A09G105400' => 'ghi', 'Gohir.A09G105500' => 'ghi', 'Gohir.D06G154600' => 'ghi', 'Gohir.D07G120200' => 'ghi', 'Gohir.D08G013900' => 'ghi', 'Gohir.D09G093100' => 'ghi', 'Gohir.D09G102200' => 'ghi', 'Gohir.D09G102300' => 'ghi', 'Gorai.001G129400' => 'gra', 'Gorai.004G008200' => 'gra', 'Gorai.006G109800' => 'gra', 'Gorai.006G119500' => 'gra', 'Gorai.006G121300' => 'gra', 'Gorai.010G180700' => 'gra', 'GSVIVG01012716001' => 'vvi', 'GSVIVG01025118001' => 'vvi', 'GSVIVG01030439001' => 'vvi', 'GSVIVG01031397001' => 'vvi', 'HanXRQChr01g0004201' => 'han', 'HanXRQChr02g0054941' => 'han', 'HanXRQChr05g0141811' => 'han', 'HanXRQChr07g0197751' => 'han', 'HanXRQChr11g0346691' => 'han', 'HanXRQChr13g0396971' => 'han', 'HanXRQChr14g0432951' => 'han', 'HanXRQChr14g0452001' => 'han', 'HanXRQChr15g0496681' => 'han', 'HanXRQChr17g0557491' => 'han', 'HanXRQChr17g0557501' => 'han', 'Haze_06809' => 'cav', 'Haze_12852' => 'cav', 'Haze_15850' => 'cav', 'Haze_23446' => 'cav', 'Haze_23942' => 'cav', 'Haze_23943' => 'cav', 'Hma1.2p1_0091F.1_g046450' => 'hma', 'Hma1.2p1_0128F.1_g059910' => 'hma', 'Hma1.2p1_0249F.1_g102260' => 'hma', 'Hma1.2p1_0453F.1_g156190' => 'hma', 'Hma1.2p1_0695F.1_g204380' => 'hma', 'Hma1.2p1_0749F.1_g212650' => 'hma', 'Hma1.2p1_2156F.1_g315420' => 'hma', 'Hma1.2p1_2686F.1_g326940' => 'hma', 'HPP92_006428' => 'vpl', 'HPP92_012069' => 'vpl', 'HPP92_014129' => 'vpl', 'HPP92_014133' => 'vpl', 'HPP92_017315' => 'vpl', 'HPP92_026445' => 'vpl', 'HPP92_026446' => 'vpl', 'Hund00774' => 'sun', 'Hund07682' => 'sun', 'Hund21413' => 'sun', 'Hund23462' => 'sun', 'Hund23463' => 'sun', 'Lalb_Chr03g0027911' => 'lal', 'Lalb_Chr13g0304271' => 'lal', 'Lalb_Chr19g0137471' => 'lal', 'Lalb_Chr22g0350651' => 'lal', 'Lalb_Chr24g0395151' => 'lal', 'Lj1A1231T40' => 'lonja', 'Lj1A221T48' => 'lonja', 'Lj1C924T12' => 'lonja', 'Lj2C993G6' => 'lonja', 'Lj3g0005790' => 'lja', 'Lj3g0015432' => 'lja', 'Lj3g0017722' => 'lja', 'Lj3g0018497' => 'lja', 'Lj4g0025071' => 'lja', 'Lsat_1_v5_gn_1_129680' => 'lsa', 'Lsat_1_v5_gn_2_25321' => 'lsa', 'Lsat_1_v5_gn_2_95461' => 'lsa', 'Lsat_1_v5_gn_4_159620' => 'lsa', 'Lsat_1_v5_gn_6_41301' => 'lsa', 'Lsat_1_v5_gn_6_74660' => 'lsa', 'Lsat_1_v5_gn_7_11520' => 'lsa', 'Lsat_1_v5_gn_9_67680' => 'lsa', 'Manes.04G008300' => 'mes', 'Manes.04G008400' => 'mes', 'Manes.04G026500' => 'mes', 'Manes.10G135300' => 'mes', 'Manes.11G157300' => 'mes', 'Manes.12G074000' => 'mes', 'Manes.16G006200' => 'mes', 'Manes.17G026400' => 'mes', 'Mapoly0024s0086' => 'mpo', 'Mapoly0024s0087' => 'mpo', 'Mapoly0071s0057' => 'mpo', 'Mapoly0204s0012' => 'mpo', 'MBI04_g37681_MAGBIO' => 'mbi', 'MBI05_g17779_MAGBIO' => 'mbi', 'MBI12_g31184_MAGBIO' => 'mbi', 'MBI17_g11083_MAGBIO' => 'mbi', 'MBI18_g03883_MAGBIO' => 'mbi', 'MBI18_g28940_MAGBIO' => 'mbi', 'MCO01G690' => 'mco', 'MD03G1109900' => 'mdo', 'MD03G1134800' => 'mdo', 'MD05G1348000' => 'mdo', 'MD10G1322400' => 'mdo', 'MD11G1123300' => 'mdo', 'MD11G1157600' => 'mdo', 'Medtr2g084875' => 'mtr', 'Medtr2g088130' => 'mtr', 'Medtr4g055310' => 'mtr', 'Medtr4g061070' => 'mtr', 'Medtr4g132250' => 'mtr', 'MELO3C004795.2' => 'cme', 'MELO3C004797.2' => 'cme', 'MELO3C007396.2' => 'cme', 'MELO3C019277.2' => 'cme', 'MELO3C021449.2' => 'cme', 'MELO3C025736.2' => 'cme', 'Migut.D02175' => 'egut', 'Migut.H01573' => 'egut', 'Migut.M01327' => 'egut', 'Migut.N02513' => 'egut', 'MSTRG.14638' => 'ama', 'MSTRG.18632' => 'ama', 'MSTRG.7203' => 'ama', 'Nitab4.5_0000533g0140' => 'nta', 'Nitab4.5_0000888g0150' => 'nta', 'Nitab4.5_0001453g0040' => 'nta', 'Nitab4.5_0002827g0090' => 'nta', 'Nitab4.5_0003082g0040' => 'nta', 'Nitab4.5_0007799g0040' => 'nta', 'Nitab4.5_0008983g0010' => 'nta', 'Nitab4.5_0009017g0020' => 'nta', 'Nn1g02132' => 'nnu', 'Nn1g03492' => 'nnu', 'Nn1g03493' => 'nnu', 'Nn1g03494' => 'nnu', 'Nn1g07164' => 'nnu', 'Nn1g07291' => 'nnu', 'Nn2g10655' => 'nnu', 'Nn2g11652' => 'nnu', 'Nn2g14008' => 'nnu', 'Nn3g17476' => 'nnu', 'Nn3g17477' => 'nnu', 'Nn4g22370' => 'nnu', 'Nn4g25255' => 'nnu', 'Nn5g27755' => 'nnu', 'Nn6g34260' => 'nnu', 'Nn6g35041' => 'nnu', 'Oeu005924.1' => 'oeu', 'Oeu008383.1' => 'oeu', 'Oeu014928.1' => 'oeu', 'Oeu019889.1' => 'oeu', 'Oeu022271.1' => 'oeu', 'Oeu025271.1' => 'oeu', 'Oeu036302.1' => 'oeu', 'Oeu044100.1' => 'oeu', 'Os01g0528300' => 'osa', 'Os03g0286200' => 'osa', 'Os04g0406600' => 'osa', 'Os07g0512000' => 'osa', 'Os07g0694600' => 'osa', 'Os08g0411000' => 'osa', 'Os09g0565700' => 'osa', 'Os09g0566050' => 'osa', 'Os10g0523700' => 'osa', 'Peaxi162Scf00002g00514' => 'pax', 'Peaxi162Scf00047g01817' => 'pax', 'Peaxi162Scf00114g00001' => 'pax', 'Peaxi162Scf00147g00613' => 'pax', 'Peaxi162Scf00389g00425' => 'pax', 'PGR042G1139' => 'pgr', 'PGR042G3273' => 'pgr', 'PGR102G2180' => 'pgr', 'PGR119G0234' => 'pgr', 'PGR119G0668' => 'pgr', 'PGSC0003DMG400007122' => 'stu', 'PGSC0003DMG400016478' => 'stu', 'PGSC0003DMG400025374' => 'stu', 'PGSC0003DMG400026536' => 'stu', 'Phvul.003G079600' => 'pvu', 'Phvul.005G115600' => 'pvu', 'Phvul.005G127100' => 'pvu', 'Phvul.006G149500' => 'pvu', 'Phvul.006G149600' => 'pvu', 'Phvul.011G071800' => 'pvu', 'Phvul.011G090400' => 'pvu', 'Potri.004G013400' => 'ptr', 'Potri.004G188100' => 'ptr', 'Potri.008G195500' => 'ptr', 'Potri.009G148800' => 'ptr', 'Potri.011G004700' => 'ptr', 'Pp3c17_22810' => 'ppa', 'Pp3c18_4480' => 'ppa', 'Pp3c19_13030' => 'ppa', 'Pp3c1_33620' => 'ppa', 'Pp3c2_9380' => 'ppa', 'PRCOL_00001023' => 'pco', 'Prupe.3G216300' => 'ppe', 'Prupe.4G019500' => 'ppe', 'Prupe.6G092500' => 'ppe', 'Prupe.6G119200' => 'ppe', 'Psat0s1945g0080' => 'psa', 'Psat0s4167g0040' => 'psa', 'Psat1g185800' => 'psa', 'Psat4g006440' => 'psa', 'Psat4g006480' => 'psa', 'Psat4g168120' => 'psa', 'Psat5g255680' => 'psa', 'Psat5g261760' => 'psa', 'Psat7g222120' => 'psa', 'PSO063G7252' => 'pso', 'PSO170G4778' => 'pso', 'PSO210G2249' => 'pso', 'PSO339G2411' => 'pso', 'PSO339G2457' => 'pso', 'PSO339G2854' => 'pso', 'PSO339G4288' => 'pso', 'PSO339G4615' => 'pso', 'PSO384G2796' => 'pso', 'PSO384G2940' => 'pso', 'PSO384G4227' => 'pso', 'PSO478G1425' => 'pso', 'PSO541G3863' => 'pso', 'PSO675G0507' => 'pso', 'PSO782G0338' => 'pso', 'PSO832G0644' => 'pso', 'QL01p013664' => 'qlo', 'QL01p036598' => 'qlo', 'QL05p072984' => 'qlo', 'QL08p005768' => 'qlo', 'QL08p032743' => 'qlo', 'QL93p0073_0439' => 'qlo', 'QL93p0073_0444' => 'qlo', 'RcHm_v2.0_Chr5g0002851' => 'rch', 'RcHm_v2.0_Chr5g0055201' => 'rch', 'RcHm_v2.0_Chr5g0061191' => 'rch', 'RcHm_v2.0_Chr7g0203231' => 'rch', 'Rhsim01G0208100' => 'rsi', 'Rhsim01G0208200' => 'rsi', 'Rhsim02G0106500' => 'rsi', 'Rhsim03G0107900' => 'rsi', 'Rhsim06G0163400' => 'rsi', 'Rhsim13G0105200' => 'rsi', 'Sabra04G0006300' => 'sbr', 'Sabra04G0127000' => 'sbr', 'Sabra08G0148700' => 'sbr', 'Sabra09G0117400' => 'sbr', 'SalBow1G3326' => 'sbo', 'SalBow3G3228' => 'sbo', 'SalBow6G1634' => 'sbo', 'SalBow6G3603' => 'sbo', 'SalBow6G5266' => 'sbo', 'SalBow7G2265' => 'sbo', 'SalBow8G0850' => 'sbo', 'SalBow8G2592' => 'sbo', 'Sc05g0009240' => 'sci', 'Sc12g0002300' => 'sci', 'Sc21g0000100' => 'sci', 'Sc21g0004720' => 'sci', 'Sed0002949' => 'sed', 'Sed0004114' => 'sed', 'Sed0004306' => 'sed', 'Sed0006172' => 'sed', 'Sed0008413' => 'sed', 'Sed0013809' => 'sed', 'Sed0019556' => 'sed', 'SEGI_03570' => 'sgi', 'SEGI_07859' => 'sgi', 'SEGI_15042' => 'sgi', 'SEGI_16263' => 'sgi', 'SEGI_16552' => 'sgi', 'SEGI_24331' => 'sgi', 'SEGI_27316' => 'sgi', 'SEGI_29521' => 'sgi', 'SEGI_41342' => 'sgi', 'SGA_v2.0_scaffold27G11617' => 'sas', 'SGA_v2.0_scaffold316G48428' => 'sas', 'SGA_v2.0_scaffold49G18261' => 'sas', 'SGA_v2.0_scaffold7G03831' => 'sas', 'SGA_v2.0_scaffold93G28359' => 'sas', 'SHI02210' => 'shi', 'SHI06028' => 'shi', 'SHI06321' => 'shi', 'SMO111G0012' => 'smo', 'SMO228G0080' => 'smo', 'SMO356G0756' => 'smo', 'Solyc02g080620.3' => 'sly', 'Solyc06g074530.1' => 'sly', 'Solyc11g066890.1' => 'sly', 'Solyc11g072520.3' => 'sly', 'Sopen02g025330' => 'spe', 'Sopen06g031000' => 'spe', 'Sopen09g008240' => 'spe', 'Sopen09g025210' => 'spe', 'Sopen11g026600' => 'spe', 'Sopen11g030170' => 'spe', 'Sp1g10420' => 'spa', 'Sp3g06570' => 'spa', 'Sp4g10660' => 'spa', 'Sp5g16460' => 'spa', 'Sp6g22710' => 'spa', 'TAR365G0112' => 'tar', 'TAR369G0717' => 'tar', 'TAR374G0976' => 'tar', 'TAR623G1128' => 'tar', 'TAR626G1937' => 'tar', 'TAR627G0123' => 'tar', 'TAR628G0305' => 'tar', 'TAR636G1176' => 'tar', 'TAR636G2442' => 'tar', 'THA.LOC104800556' => 'tha', 'THA.LOC104809501' => 'tha', 'THA.LOC104815126' => 'tha', 'THA.LOC104815732' => 'tha', 'THA.LOC104823528' => 'tha', 'Thecc.02G365600' => 'tca', 'Thecc.06G222300' => 'tca', 'Thecc.09G261800' => 'tca', 'Thecc.09G291400' => 'tca', 'Thhalv10003028m.g' => 'esa', 'Thhalv10007886m.g' => 'esa', 'Thhalv10016085m.g' => 'esa', 'Thhalv10016681m.g' => 'esa', 'Thhalv10020951m.g' => 'esa', 'TPR.G15598' => 'tpr', 'TPR.G29305' => 'tpr', 'TPR.G32395' => 'tpr', 'TPR.G36998' => 'tpr', 'TPR.G4227' => 'tpr', 'TWI18G1433' => 'twi', 'TWI31G0755' => 'twi', 'TWI38G0912' => 'twi', 'TWI75G1097' => 'twi', 'TWI75G1619' => 'twi', 'TWI79G1336' => 'twi', 'unitig_0.g943' => 'ugi', 'unitig_0.g944' => 'ugi', 'unitig_22.g6646' => 'ugi', 'unitig_37.g12681' => 'ugi', 'unitig_8.g3290' => 'ugi', 'vmacro03278' => 'vma', 'vmacro12197' => 'vma', 'vmacro14478' => 'vma', 'vmacro15787' => 'vma', 'vmacro15789' => 'vma', 'vmacro15790' => 'vma', 'vmacro15806' => 'vma', 'vmacro22907' => 'vma', 'vmacro22908' => 'vma', 'vmacro22909' => 'vma', 'vmacro23108' => 'vma', 'VMungo0540G0540' => 'vmu', 'VMungo0540G2468' => 'vmu', 'VMungo1080G0390' => 'vmu', 'VMungo1080G1165' => 'vmu', 'VMungo1127G0170' => 'vmu', 'VMungo1127G2099' => 'vmu', 'VMungo1215G3013' => 'vmu', 'Zm00001eb013110' => 'zma', 'Zm00001eb084260' => 'zma', 'Zm00001eb096110' => 'zma', 'Zm00001eb217510' => 'zma', 'Zm00001eb322550' => 'zma', 'Zm00001eb390770' => 'zma', 'Zm00001eb397170' => 'zma', 'Zm00001eb404610' => 'zma', 'Zm00001eb421790' => 'zma' ), 'gf_id' => 'HOM05D000911', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000911' ), 'data_identifier' => 'HOM05D000911', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000911', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27780' => 'bna', 'A03p35380' => 'bna', 'A04p21160' => 'bna', 'A05p40570' => 'bna', 'A06p26900' => 'bna', 'A08p33230' => 'bna', 'A09p65960' => 'bna', 'A10p18290' => 'bna', 'Aa31LG1G12990' => 'aar', 'Aa31LG1G2980' => 'aar', 'Aa31LG4G14320' => 'aar', 'Aa31LG7G11800' => 'aar', 'Aa31sc36G50' => 'aar', 'Aa31sc36G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3721' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5459' => 'aag', 'Actinidia03028' => 'ach', 'Actinidia03753' => 'ach', 'Actinidia04187' => 'ach', 'Actinidia05509' => 'ach', 'Actinidia24180' => 'ach', 'Actinidia26906' => 'ach', 'Actinidia37097' => 'ach', 'Actinidia38249' => 'ach', 'Ah.01g003470' => 'amhyb', 'Ah.01g004580' => 'amhyb', 'Ah.01g014850' => 'amhyb', 'Ah.01g016830' => 'amhyb', 'Ah.14g088000' => 'amhyb', 'AL1G22980' => 'aly', 'AL3G18990' => 'aly', 'AL4G22440' => 'aly', 'AL4G33180' => 'aly', 'AL5G22920' => 'aly', 'AL6G33660' => 'aly', 'AL8G20720' => 'aly', 'Aqoxy1G00935' => 'aox', 'Aqoxy1G02094' => 'aox', 'Aqoxy2G01239' => 'aox', 'Aqoxy4G01870' => 'aox', 'Aqoxy7G00450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.36ZVTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71EM27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5D6C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH3WRE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3NCM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RIM768' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YB5YRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z36GDV' => 'arhy', 'AT1G08250' => 'ath', 'AT1G11790' => 'ath', 'AT2G27820' => 'ath', 'AT3G07630' => 'ath', 'AT3G44720' => 'ath', 'AT5G22630' => 'ath', 'ATR0693G304' => 'atr', 'ATR0794G109' => 'atr', 'ATR0820G120' => 'atr', 'ATR1159G064' => 'atr', 'Atru.chr10.2239' => 'acertr', 'Atru.chr3.3371' => 'acertr', 'Atru.chr6.3202' => 'acertr', 'AUR62006499' => 'cqu', 'AUR62012718' => 'cqu', 'AUR62021938' => 'cqu', 'AUR62023932' => 'cqu', 'AUR62025034' => 'cqu', 'AUR62025035' => 'cqu', 'AUR62038307' => 'cqu', 'AUR62043466' => 'cqu', 'BcaB02g10748' => 'bca', 'BcaB03g13231' => 'bca', 'BcaB03g14689' => 'bca', 'BcaB05g22716' => 'bca', 'BcaB06g28172' => 'bca', 'BcaB08g36413' => 'bca', 'BcaC01g02186' => 'bca', 'BcaC01g04272' => 'bca', 'BcaC02g08080' => 'bca', 'BcaC02g08227' => 'bca', 'BcaC03g13901' => 'bca', 'BcaC04g19593' => 'bca', 'BcaC04g20874' => 'bca', 'BcaC05g29557' => 'bca', 'BcaC06g35505' => 'bca', 'BcaC07g41954' => 'bca', 'BcaC07g41955' => 'bca', 'BcaC07g41956' => 'bca', 'BcaC07g42519' => 'bca', 'BcaC07g42520' => 'bca', 'BcaC07g42523' => 'bca', 'BcaC07g42524' => 'bca', 'BcaC07g42525' => 'bca', 'BcaC08g47480' => 'bca', 'BcaC08g47481' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00530' => 'bna', 'BolC2t07178H' => 'bol', 'BolC3t16567H' => 'bol', 'BolC4t27234H' => 'bol', 'BolC5t29728H' => 'bol', 'BolC5t34622H' => 'bol', 'BolC6t40321H' => 'bol', 'BolC7t42028H' => 'bol', 'BolC8t49125H' => 'bol', 'BolC8t52538H' => 'bol', 'BolC8t52539H' => 'bol', 'BolC9t56681H' => 'bol', 'BolC9t58266H' => 'bol', 'BolSC21t60294H' => 'bol', 'BraA02t05670Z' => 'bra', 'BraA03t12716Z' => 'bra', 'BraA04t17685Z' => 'bra', 'BraA05t22788Z' => 'bra', 'BraA06t24032Z' => 'bra', 'BraA06t25625Z' => 'bra', 'BraA07t27930Z' => 'bra', 'BraA08t35242Z' => 'bra', 'BraA09t38609Z' => 'bra', 'BraA10t43905Z' => 'bra', 'C02p11060' => 'bna', 'C03p42990' => 'bna', 'C03p67310' => 'bna', 'C04p56990' => 'bna', 'C04p58660' => 'bna', 'C05p09890' => 'bna', 'C05p59680' => 'bna', 'C06p19830' => 'bna', 'C06p53040' => 'bna', 'C07p15230' => 'bna', 'C08p50070' => 'bna', 'C08p50090' => 'bna', 'C09p38330' => 'bna', 'C09p53940' => 'bna', 'CAN.G1014.1' => 'can', 'CAN.G644.30' => 'can', 'CAN.G84.47' => 'can', 'CAN.G919.8' => 'can', 'CANSAT54G0113' => 'cansat', 'CANSAT54G1286' => 'cansat', 'CANSAT64G1020' => 'cansat', 'CARHR008080' => 'chi', 'CARHR008090' => 'chi', 'CARHR012130' => 'chi', 'CARHR038390' => 'chi', 'CARHR082330' => 'chi', 'CARHR120520' => 'chi', 'CARHR151470' => 'chi', 'CARHR190950' => 'chi', 'Carub.0001s0760' => 'cru', 'Carub.0001s1146' => 'cru', 'Carub.0003s0721' => 'cru', 'Carub.0004s0858' => 'cru', 'Carub.0005s1040' => 'cru', 'Carub.0006s2035' => 'cru', 'Carub.0015s0005' => 'cru', 'Ca_01607_v3' => 'car', 'Ca_01677_v3' => 'car', 'Ca_06087_v3' => 'car', 'Ca_19238_v3' => 'car', 'Ca_19373_v3' => 'car', 'Ca_21079_v3' => 'car', 'CBR_g54016' => 'cbr', 'CBR_g54018' => 'cbr', 'CBR_g54020' => 'cbr', 'Cc01_g09780' => 'ccan', 'Cc01_g11680' => 'ccan', 'Cc02_g15610' => 'ccan', 'Cc05_g04350' => 'ccan', 'Cc09_g01580' => 'ccan', 'CDE01G0795' => 'cde', 'CDE02G2024' => 'cde', 'CDE02G2260' => 'cde', 'CDE02G4561' => 'cde', 'CDE05G2733' => 'cde', 'CDE05G3422' => 'cde', 'CDE06G2003' => 'cde', 'CDE08G0576' => 'cde', 'CDE09G0048' => 'cde', 'CDE11G0805' => 'cde', 'Cfa003644' => 'cfa', 'Cfa006290' => 'cfa', 'Cfa010080' => 'cfa', 'Cfa011376' => 'cfa', 'Cfa011576' => 'cfa', 'Cfa011577' => 'cfa', 'Cfa014389' => 'cfa', 'Ciclev10006044m.g' => 'ccl', 'Ciclev10006954m.g' => 'ccl', 'Ciclev10015131m.g' => 'ccl', 'Ciclev10015580m.g' => 'ccl', 'Ciclev10028359m.g' => 'ccl', 'Ciclev10028573m.g' => 'ccl', 'CiPaw.03G159300' => 'cil', 'CiPaw.04G115100' => 'cil', 'CiPaw.09G092800' => 'cil', 'CiPaw.10G071800' => 'cil', 'CiPaw.13G105800' => 'cil', 'CiPaw.13G141000' => 'cil', 'CiPaw.14G103400' => 'cil', 'ClCG01G012700' => 'cla', 'ClCG01G012720' => 'cla', 'ClCG01G021920' => 'cla', 'ClCG02G008870' => 'cla', 'ClCG02G020840' => 'cla', 'ClCG02G021930' => 'cla', 'COL.COLO4_19302' => 'col', 'COL.COLO4_25262' => 'col', 'COL.COLO4_31788' => 'col', 'Cpa.g.c34684' => 'cpa', 'Cpa.g.c36520.1' => 'cpa', 'Cpa.g.c45626' => 'cpa', 'Cpa.g.sc121.17' => 'cpa', 'Cpa.g.sc13.22' => 'cpa', 'Cpa.g.sc87.88' => 'cpa', 'Cre06.g261800' => 'cre', 'CsaV3_1G014500' => 'csa', 'CsaV3_1G014510' => 'csa', 'CsaV3_2G034880' => 'csa', 'CsaV3_6G014760' => 'csa', 'CsaV3_6G021500' => 'csa', 'CsaV3_6G048980' => 'csa', 'CSS0002511' => 'camsi', 'CSS0007556' => 'camsi', 'CSS0008532' => 'camsi', 'CSS0009709' => 'camsi', 'CSS0010486' => 'camsi', 'CSS0016768' => 'camsi', 'CSS0023512' => 'camsi', 'CSS0025341' => 'camsi', 'CSS0027999' => 'camsi', 'CSS0028944' => 'camsi', 'CSS0032292' => 'camsi', 'CSS0032464' => 'camsi', 'CSS0037153' => 'camsi', 'CSS0039256' => 'camsi', 'CSS0048392' => 'camsi', 'CSS0050458' => 'camsi', 'DCAR_004224' => 'dca', 'DCAR_006147' => 'dca', 'DCAR_006465' => 'dca', 'DCAR_008159' => 'dca', 'DCAR_012164' => 'dca', 'DCAR_019764' => 'dca', 'Dinv05418' => 'din', 'Dinv10839' => 'din', 'Dinv12521' => 'din', 'Dinv13900' => 'din', 'Dinv29426' => 'din', 'Duzib150G0263' => 'dzi', 'Duzib168G1178' => 'dzi', 'Duzib168G1924' => 'dzi', 'Duzib170G0299' => 'dzi', 'Duzib170G0813' => 'dzi', 'Duzib235G1128' => 'dzi', 'Duzib248G1060' => 'dzi', 'ECA232G1910' => 'eca', 'ECA233G4621' => 'eca', 'ECA238G1216' => 'eca', 'ECA238G1784' => 'eca', 'ECA248G1242' => 'eca', 'EL10Ac8g20071' => 'bvu', 'EL10Ac9g21086' => 'bvu', 'EL10Ac9g22407' => 'bvu', 'EL10Ac9g22412' => 'bvu', 'Eucgr.A01119' => 'egr', 'Eucgr.E04043' => 'egr', 'Eucgr.J00428' => 'egr', 'Eucgr.J00958' => 'egr', 'FAN11G3091' => 'fan', 'FAN11G3651' => 'fan', 'FAN16G2566' => 'fan', 'FAN21G3155' => 'fan', 'FAN21G3400' => 'fan', 'FAN21G3543' => 'fan', 'FAN25G0234' => 'fan', 'FAN25G1422' => 'fan', 'FAN25G3392' => 'fan', 'FvH4_3g01940' => 'fve', 'FvH4_3g29870' => 'fve', 'FvH4_3g33680' => 'fve', 'Glyma.09G004200' => 'gma', 'Glyma.11G151288' => 'gma', 'Glyma.11G189100' => 'gma', 'Glyma.12G072500' => 'gma', 'Glyma.12G085500' => 'gma', 'Glyma.12G181800' => 'gma', 'Glyma.12G193000' => 'gma', 'Glyma.13G309300' => 'gma', 'Glyma.13G319000' => 'gma', 'Glyma.17G012600' => 'gma', 'Gohir.A06G148600' => 'ghi', 'Gohir.A07G115800' => 'ghi', 'Gohir.A08G003600' => 'ghi', 'Gohir.A09G093300' => 'ghi', 'Gohir.A09G105400' => 'ghi', 'Gohir.A09G105500' => 'ghi', 'Gohir.D06G154600' => 'ghi', 'Gohir.D07G120200' => 'ghi', 'Gohir.D08G013900' => 'ghi', 'Gohir.D09G093100' => 'ghi', 'Gohir.D09G102200' => 'ghi', 'Gohir.D09G102300' => 'ghi', 'Gorai.001G129400' => 'gra', 'Gorai.004G008200' => 'gra', 'Gorai.006G109800' => 'gra', 'Gorai.006G119500' => 'gra', 'Gorai.006G121300' => 'gra', 'Gorai.010G180700' => 'gra', 'GSVIVG01012716001' => 'vvi', 'GSVIVG01025118001' => 'vvi', 'GSVIVG01030439001' => 'vvi', 'GSVIVG01031397001' => 'vvi', 'HanXRQChr01g0004201' => 'han', 'HanXRQChr02g0054941' => 'han', 'HanXRQChr05g0141811' => 'han', 'HanXRQChr07g0197751' => 'han', 'HanXRQChr11g0346691' => 'han', 'HanXRQChr13g0396971' => 'han', 'HanXRQChr14g0432951' => 'han', 'HanXRQChr14g0452001' => 'han', 'HanXRQChr15g0496681' => 'han', 'HanXRQChr17g0557491' => 'han', 'HanXRQChr17g0557501' => 'han', 'Haze_06809' => 'cav', 'Haze_12852' => 'cav', 'Haze_15850' => 'cav', 'Haze_23446' => 'cav', 'Haze_23942' => 'cav', 'Haze_23943' => 'cav', 'Hma1.2p1_0091F.1_g046450' => 'hma', 'Hma1.2p1_0128F.1_g059910' => 'hma', 'Hma1.2p1_0249F.1_g102260' => 'hma', 'Hma1.2p1_0453F.1_g156190' => 'hma', 'Hma1.2p1_0695F.1_g204380' => 'hma', 'Hma1.2p1_0749F.1_g212650' => 'hma', 'Hma1.2p1_2156F.1_g315420' => 'hma', 'Hma1.2p1_2686F.1_g326940' => 'hma', 'HPP92_006428' => 'vpl', 'HPP92_012069' => 'vpl', 'HPP92_014129' => 'vpl', 'HPP92_014133' => 'vpl', 'HPP92_017315' => 'vpl', 'HPP92_026445' => 'vpl', 'HPP92_026446' => 'vpl', 'Hund00774' => 'sun', 'Hund07682' => 'sun', 'Hund21413' => 'sun', 'Hund23462' => 'sun', 'Hund23463' => 'sun', 'Lalb_Chr03g0027911' => 'lal', 'Lalb_Chr13g0304271' => 'lal', 'Lalb_Chr19g0137471' => 'lal', 'Lalb_Chr22g0350651' => 'lal', 'Lalb_Chr24g0395151' => 'lal', 'Lj1A1231T40' => 'lonja', 'Lj1A221T48' => 'lonja', 'Lj1C924T12' => 'lonja', 'Lj2C993G6' => 'lonja', 'Lj3g0005790' => 'lja', 'Lj3g0015432' => 'lja', 'Lj3g0017722' => 'lja', 'Lj3g0018497' => 'lja', 'Lj4g0025071' => 'lja', 'Lsat_1_v5_gn_1_129680' => 'lsa', 'Lsat_1_v5_gn_2_25321' => 'lsa', 'Lsat_1_v5_gn_2_95461' => 'lsa', 'Lsat_1_v5_gn_4_159620' => 'lsa', 'Lsat_1_v5_gn_6_41301' => 'lsa', 'Lsat_1_v5_gn_6_74660' => 'lsa', 'Lsat_1_v5_gn_7_11520' => 'lsa', 'Lsat_1_v5_gn_9_67680' => 'lsa', 'Manes.04G008300' => 'mes', 'Manes.04G008400' => 'mes', 'Manes.04G026500' => 'mes', 'Manes.10G135300' => 'mes', 'Manes.11G157300' => 'mes', 'Manes.12G074000' => 'mes', 'Manes.16G006200' => 'mes', 'Manes.17G026400' => 'mes', 'Mapoly0024s0086' => 'mpo', 'Mapoly0024s0087' => 'mpo', 'Mapoly0071s0057' => 'mpo', 'Mapoly0204s0012' => 'mpo', 'MBI04_g37681_MAGBIO' => 'mbi', 'MBI05_g17779_MAGBIO' => 'mbi', 'MBI12_g31184_MAGBIO' => 'mbi', 'MBI17_g11083_MAGBIO' => 'mbi', 'MBI18_g03883_MAGBIO' => 'mbi', 'MBI18_g28940_MAGBIO' => 'mbi', 'MCO01G690' => 'mco', 'MD03G1109900' => 'mdo', 'MD03G1134800' => 'mdo', 'MD05G1348000' => 'mdo', 'MD10G1322400' => 'mdo', 'MD11G1123300' => 'mdo', 'MD11G1157600' => 'mdo', 'Medtr2g084875' => 'mtr', 'Medtr2g088130' => 'mtr', 'Medtr4g055310' => 'mtr', 'Medtr4g061070' => 'mtr', 'Medtr4g132250' => 'mtr', 'MELO3C004795.2' => 'cme', 'MELO3C004797.2' => 'cme', 'MELO3C007396.2' => 'cme', 'MELO3C019277.2' => 'cme', 'MELO3C021449.2' => 'cme', 'MELO3C025736.2' => 'cme', 'Migut.D02175' => 'egut', 'Migut.H01573' => 'egut', 'Migut.M01327' => 'egut', 'Migut.N02513' => 'egut', 'MSTRG.14638' => 'ama', 'MSTRG.18632' => 'ama', 'MSTRG.7203' => 'ama', 'Nitab4.5_0000533g0140' => 'nta', 'Nitab4.5_0000888g0150' => 'nta', 'Nitab4.5_0001453g0040' => 'nta', 'Nitab4.5_0002827g0090' => 'nta', 'Nitab4.5_0003082g0040' => 'nta', 'Nitab4.5_0007799g0040' => 'nta', 'Nitab4.5_0008983g0010' => 'nta', 'Nitab4.5_0009017g0020' => 'nta', 'Nn1g02132' => 'nnu', 'Nn1g03492' => 'nnu', 'Nn1g03493' => 'nnu', 'Nn1g03494' => 'nnu', 'Nn1g07164' => 'nnu', 'Nn1g07291' => 'nnu', 'Nn2g10655' => 'nnu', 'Nn2g11652' => 'nnu', 'Nn2g14008' => 'nnu', 'Nn3g17476' => 'nnu', 'Nn3g17477' => 'nnu', 'Nn4g22370' => 'nnu', 'Nn4g25255' => 'nnu', 'Nn5g27755' => 'nnu', 'Nn6g34260' => 'nnu', 'Nn6g35041' => 'nnu', 'Oeu005924.1' => 'oeu', 'Oeu008383.1' => 'oeu', 'Oeu014928.1' => 'oeu', 'Oeu019889.1' => 'oeu', 'Oeu022271.1' => 'oeu', 'Oeu025271.1' => 'oeu', 'Oeu036302.1' => 'oeu', 'Oeu044100.1' => 'oeu', 'Os01g0528300' => 'osa', 'Os03g0286200' => 'osa', 'Os04g0406600' => 'osa', 'Os07g0512000' => 'osa', 'Os07g0694600' => 'osa', 'Os08g0411000' => 'osa', 'Os09g0565700' => 'osa', 'Os09g0566050' => 'osa', 'Os10g0523700' => 'osa', 'Peaxi162Scf00002g00514' => 'pax', 'Peaxi162Scf00047g01817' => 'pax', 'Peaxi162Scf00114g00001' => 'pax', 'Peaxi162Scf00147g00613' => 'pax', 'Peaxi162Scf00389g00425' => 'pax', 'PGR042G1139' => 'pgr', 'PGR042G3273' => 'pgr', 'PGR102G2180' => 'pgr', 'PGR119G0234' => 'pgr', 'PGR119G0668' => 'pgr', 'PGSC0003DMG400007122' => 'stu', 'PGSC0003DMG400016478' => 'stu', 'PGSC0003DMG400025374' => 'stu', 'PGSC0003DMG400026536' => 'stu', 'Phvul.003G079600' => 'pvu', 'Phvul.005G115600' => 'pvu', 'Phvul.005G127100' => 'pvu', 'Phvul.006G149500' => 'pvu', 'Phvul.006G149600' => 'pvu', 'Phvul.011G071800' => 'pvu', 'Phvul.011G090400' => 'pvu', 'Potri.004G013400' => 'ptr', 'Potri.004G188100' => 'ptr', 'Potri.008G195500' => 'ptr', 'Potri.009G148800' => 'ptr', 'Potri.011G004700' => 'ptr', 'Pp3c17_22810' => 'ppa', 'Pp3c18_4480' => 'ppa', 'Pp3c19_13030' => 'ppa', 'Pp3c1_33620' => 'ppa', 'Pp3c2_9380' => 'ppa', 'PRCOL_00001023' => 'pco', 'Prupe.3G216300' => 'ppe', 'Prupe.4G019500' => 'ppe', 'Prupe.6G092500' => 'ppe', 'Prupe.6G119200' => 'ppe', 'Psat0s1945g0080' => 'psa', 'Psat0s4167g0040' => 'psa', 'Psat1g185800' => 'psa', 'Psat4g006440' => 'psa', 'Psat4g006480' => 'psa', 'Psat4g168120' => 'psa', 'Psat5g255680' => 'psa', 'Psat5g261760' => 'psa', 'Psat7g222120' => 'psa', 'PSO063G7252' => 'pso', 'PSO170G4778' => 'pso', 'PSO210G2249' => 'pso', 'PSO339G2411' => 'pso', 'PSO339G2457' => 'pso', 'PSO339G2854' => 'pso', 'PSO339G4288' => 'pso', 'PSO339G4615' => 'pso', 'PSO384G2796' => 'pso', 'PSO384G2940' => 'pso', 'PSO384G4227' => 'pso', 'PSO478G1425' => 'pso', 'PSO541G3863' => 'pso', 'PSO675G0507' => 'pso', 'PSO782G0338' => 'pso', 'PSO832G0644' => 'pso', 'QL01p013664' => 'qlo', 'QL01p036598' => 'qlo', 'QL05p072984' => 'qlo', 'QL08p005768' => 'qlo', 'QL08p032743' => 'qlo', 'QL93p0073_0439' => 'qlo', 'QL93p0073_0444' => 'qlo', 'RcHm_v2.0_Chr5g0002851' => 'rch', 'RcHm_v2.0_Chr5g0055201' => 'rch', 'RcHm_v2.0_Chr5g0061191' => 'rch', 'RcHm_v2.0_Chr7g0203231' => 'rch', 'Rhsim01G0208100' => 'rsi', 'Rhsim01G0208200' => 'rsi', 'Rhsim02G0106500' => 'rsi', 'Rhsim03G0107900' => 'rsi', 'Rhsim06G0163400' => 'rsi', 'Rhsim13G0105200' => 'rsi', 'Sabra04G0006300' => 'sbr', 'Sabra04G0127000' => 'sbr', 'Sabra08G0148700' => 'sbr', 'Sabra09G0117400' => 'sbr', 'SalBow1G3326' => 'sbo', 'SalBow3G3228' => 'sbo', 'SalBow6G1634' => 'sbo', 'SalBow6G3603' => 'sbo', 'SalBow6G5266' => 'sbo', 'SalBow7G2265' => 'sbo', 'SalBow8G0850' => 'sbo', 'SalBow8G2592' => 'sbo', 'Sc05g0009240' => 'sci', 'Sc12g0002300' => 'sci', 'Sc21g0000100' => 'sci', 'Sc21g0004720' => 'sci', 'Sed0002949' => 'sed', 'Sed0004114' => 'sed', 'Sed0004306' => 'sed', 'Sed0006172' => 'sed', 'Sed0008413' => 'sed', 'Sed0013809' => 'sed', 'Sed0019556' => 'sed', 'SEGI_03570' => 'sgi', 'SEGI_07859' => 'sgi', 'SEGI_15042' => 'sgi', 'SEGI_16263' => 'sgi', 'SEGI_16552' => 'sgi', 'SEGI_24331' => 'sgi', 'SEGI_27316' => 'sgi', 'SEGI_29521' => 'sgi', 'SEGI_41342' => 'sgi', 'SGA_v2.0_scaffold27G11617' => 'sas', 'SGA_v2.0_scaffold316G48428' => 'sas', 'SGA_v2.0_scaffold49G18261' => 'sas', 'SGA_v2.0_scaffold7G03831' => 'sas', 'SGA_v2.0_scaffold93G28359' => 'sas', 'SHI02210' => 'shi', 'SHI06028' => 'shi', 'SHI06321' => 'shi', 'SMO111G0012' => 'smo', 'SMO228G0080' => 'smo', 'SMO356G0756' => 'smo', 'Solyc02g080620.3' => 'sly', 'Solyc06g074530.1' => 'sly', 'Solyc11g066890.1' => 'sly', 'Solyc11g072520.3' => 'sly', 'Sopen02g025330' => 'spe', 'Sopen06g031000' => 'spe', 'Sopen09g008240' => 'spe', 'Sopen09g025210' => 'spe', 'Sopen11g026600' => 'spe', 'Sopen11g030170' => 'spe', 'Sp1g10420' => 'spa', 'Sp3g06570' => 'spa', 'Sp4g10660' => 'spa', 'Sp5g16460' => 'spa', 'Sp6g22710' => 'spa', 'TAR365G0112' => 'tar', 'TAR369G0717' => 'tar', 'TAR374G0976' => 'tar', 'TAR623G1128' => 'tar', 'TAR626G1937' => 'tar', 'TAR627G0123' => 'tar', 'TAR628G0305' => 'tar', 'TAR636G1176' => 'tar', 'TAR636G2442' => 'tar', 'THA.LOC104800556' => 'tha', 'THA.LOC104809501' => 'tha', 'THA.LOC104815126' => 'tha', 'THA.LOC104815732' => 'tha', 'THA.LOC104823528' => 'tha', 'Thecc.02G365600' => 'tca', 'Thecc.06G222300' => 'tca', 'Thecc.09G261800' => 'tca', 'Thecc.09G291400' => 'tca', 'Thhalv10003028m.g' => 'esa', 'Thhalv10007886m.g' => 'esa', 'Thhalv10016085m.g' => 'esa', 'Thhalv10016681m.g' => 'esa', 'Thhalv10020951m.g' => 'esa', 'TPR.G15598' => 'tpr', 'TPR.G29305' => 'tpr', 'TPR.G32395' => 'tpr', 'TPR.G36998' => 'tpr', 'TPR.G4227' => 'tpr', 'TWI18G1433' => 'twi', 'TWI31G0755' => 'twi', 'TWI38G0912' => 'twi', 'TWI75G1097' => 'twi', 'TWI75G1619' => 'twi', 'TWI79G1336' => 'twi', 'unitig_0.g943' => 'ugi', 'unitig_0.g944' => 'ugi', 'unitig_22.g6646' => 'ugi', 'unitig_37.g12681' => 'ugi', 'unitig_8.g3290' => 'ugi', 'vmacro03278' => 'vma', 'vmacro12197' => 'vma', 'vmacro14478' => 'vma', 'vmacro15787' => 'vma', 'vmacro15789' => 'vma', 'vmacro15790' => 'vma', 'vmacro15806' => 'vma', 'vmacro22907' => 'vma', 'vmacro22908' => 'vma', 'vmacro22909' => 'vma', 'vmacro23108' => 'vma', 'VMungo0540G0540' => 'vmu', 'VMungo0540G2468' => 'vmu', 'VMungo1080G0390' => 'vmu', 'VMungo1080G1165' => 'vmu', 'VMungo1127G0170' => 'vmu', 'VMungo1127G2099' => 'vmu', 'VMungo1215G3013' => 'vmu', 'Zm00001eb013110' => 'zma', 'Zm00001eb084260' => 'zma', 'Zm00001eb096110' => 'zma', 'Zm00001eb217510' => 'zma', 'Zm00001eb322550' => 'zma', 'Zm00001eb390770' => 'zma', 'Zm00001eb397170' => 'zma', 'Zm00001eb404610' => 'zma', 'Zm00001eb421790' => 'zma' ) $gf_id = 'HOM05D000911' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000911' ) $data_identifier = 'HOM05D000911' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 16, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 5, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 6, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 8, 'nnu' => (int) 16, 'oeu' => (int) 8, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 5, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 16, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421790' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000911', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27780' => 'bna', 'A03p35380' => 'bna', 'A04p21160' => 'bna', 'A05p40570' => 'bna', 'A06p26900' => 'bna', 'A08p33230' => 'bna', 'A09p65960' => 'bna', 'A10p18290' => 'bna', 'Aa31LG1G12990' => 'aar', 'Aa31LG1G2980' => 'aar', 'Aa31LG4G14320' => 'aar', 'Aa31LG7G11800' => 'aar', 'Aa31sc36G50' => 'aar', 'Aa31sc36G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3721' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5459' => 'aag', 'Actinidia03028' => 'ach', 'Actinidia03753' => 'ach', 'Actinidia04187' => 'ach', 'Actinidia05509' => 'ach', 'Actinidia24180' => 'ach', 'Actinidia26906' => 'ach', 'Actinidia37097' => 'ach', 'Actinidia38249' => 'ach', 'Ah.01g003470' => 'amhyb', 'Ah.01g004580' => 'amhyb', 'Ah.01g014850' => 'amhyb', 'Ah.01g016830' => 'amhyb', 'Ah.14g088000' => 'amhyb', 'AL1G22980' => 'aly', 'AL3G18990' => 'aly', 'AL4G22440' => 'aly', 'AL4G33180' => 'aly', 'AL5G22920' => 'aly', 'AL6G33660' => 'aly', 'AL8G20720' => 'aly', 'Aqoxy1G00935' => 'aox', 'Aqoxy1G02094' => 'aox', 'Aqoxy2G01239' => 'aox', 'Aqoxy4G01870' => 'aox', 'Aqoxy7G00450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.36ZVTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71EM27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5D6C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH3WRE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3NCM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RIM768' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YB5YRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z36GDV' => 'arhy', 'AT1G08250' => 'ath', 'AT1G11790' => 'ath', 'AT2G27820' => 'ath', 'AT3G07630' => 'ath', 'AT3G44720' => 'ath', 'AT5G22630' => 'ath', 'ATR0693G304' => 'atr', 'ATR0794G109' => 'atr', 'ATR0820G120' => 'atr', 'ATR1159G064' => 'atr', 'Atru.chr10.2239' => 'acertr', 'Atru.chr3.3371' => 'acertr', 'Atru.chr6.3202' => 'acertr', 'AUR62006499' => 'cqu', 'AUR62012718' => 'cqu', 'AUR62021938' => 'cqu', 'AUR62023932' => 'cqu', 'AUR62025034' => 'cqu', 'AUR62025035' => 'cqu', 'AUR62038307' => 'cqu', 'AUR62043466' => 'cqu', 'BcaB02g10748' => 'bca', 'BcaB03g13231' => 'bca', 'BcaB03g14689' => 'bca', 'BcaB05g22716' => 'bca', 'BcaB06g28172' => 'bca', 'BcaB08g36413' => 'bca', 'BcaC01g02186' => 'bca', 'BcaC01g04272' => 'bca', 'BcaC02g08080' => 'bca', 'BcaC02g08227' => 'bca', 'BcaC03g13901' => 'bca', 'BcaC04g19593' => 'bca', 'BcaC04g20874' => 'bca', 'BcaC05g29557' => 'bca', 'BcaC06g35505' => 'bca', 'BcaC07g41954' => 'bca', 'BcaC07g41955' => 'bca', 'BcaC07g41956' => 'bca', 'BcaC07g42519' => 'bca', 'BcaC07g42520' => 'bca', 'BcaC07g42523' => 'bca', 'BcaC07g42524' => 'bca', 'BcaC07g42525' => 'bca', 'BcaC08g47480' => 'bca', 'BcaC08g47481' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00530' => 'bna', 'BolC2t07178H' => 'bol', 'BolC3t16567H' => 'bol', 'BolC4t27234H' => 'bol', 'BolC5t29728H' => 'bol', 'BolC5t34622H' => 'bol', 'BolC6t40321H' => 'bol', 'BolC7t42028H' => 'bol', 'BolC8t49125H' => 'bol', 'BolC8t52538H' => 'bol', 'BolC8t52539H' => 'bol', 'BolC9t56681H' => 'bol', 'BolC9t58266H' => 'bol', 'BolSC21t60294H' => 'bol', 'BraA02t05670Z' => 'bra', 'BraA03t12716Z' => 'bra', 'BraA04t17685Z' => 'bra', 'BraA05t22788Z' => 'bra', 'BraA06t24032Z' => 'bra', 'BraA06t25625Z' => 'bra', 'BraA07t27930Z' => 'bra', 'BraA08t35242Z' => 'bra', 'BraA09t38609Z' => 'bra', 'BraA10t43905Z' => 'bra', 'C02p11060' => 'bna', 'C03p42990' => 'bna', 'C03p67310' => 'bna', 'C04p56990' => 'bna', 'C04p58660' => 'bna', 'C05p09890' => 'bna', 'C05p59680' => 'bna', 'C06p19830' => 'bna', 'C06p53040' => 'bna', 'C07p15230' => 'bna', 'C08p50070' => 'bna', 'C08p50090' => 'bna', 'C09p38330' => 'bna', 'C09p53940' => 'bna', 'CAN.G1014.1' => 'can', 'CAN.G644.30' => 'can', 'CAN.G84.47' => 'can', 'CAN.G919.8' => 'can', 'CANSAT54G0113' => 'cansat', 'CANSAT54G1286' => 'cansat', 'CANSAT64G1020' => 'cansat', 'CARHR008080' => 'chi', 'CARHR008090' => 'chi', 'CARHR012130' => 'chi', 'CARHR038390' => 'chi', 'CARHR082330' => 'chi', 'CARHR120520' => 'chi', 'CARHR151470' => 'chi', 'CARHR190950' => 'chi', 'Carub.0001s0760' => 'cru', 'Carub.0001s1146' => 'cru', 'Carub.0003s0721' => 'cru', 'Carub.0004s0858' => 'cru', 'Carub.0005s1040' => 'cru', 'Carub.0006s2035' => 'cru', 'Carub.0015s0005' => 'cru', 'Ca_01607_v3' => 'car', 'Ca_01677_v3' => 'car', 'Ca_06087_v3' => 'car', 'Ca_19238_v3' => 'car', 'Ca_19373_v3' => 'car', 'Ca_21079_v3' => 'car', 'CBR_g54016' => 'cbr', 'CBR_g54018' => 'cbr', 'CBR_g54020' => 'cbr', 'Cc01_g09780' => 'ccan', 'Cc01_g11680' => 'ccan', 'Cc02_g15610' => 'ccan', 'Cc05_g04350' => 'ccan', 'Cc09_g01580' => 'ccan', 'CDE01G0795' => 'cde', 'CDE02G2024' => 'cde', 'CDE02G2260' => 'cde', 'CDE02G4561' => 'cde', 'CDE05G2733' => 'cde', 'CDE05G3422' => 'cde', 'CDE06G2003' => 'cde', 'CDE08G0576' => 'cde', 'CDE09G0048' => 'cde', 'CDE11G0805' => 'cde', 'Cfa003644' => 'cfa', 'Cfa006290' => 'cfa', 'Cfa010080' => 'cfa', 'Cfa011376' => 'cfa', 'Cfa011576' => 'cfa', 'Cfa011577' => 'cfa', 'Cfa014389' => 'cfa', 'Ciclev10006044m.g' => 'ccl', 'Ciclev10006954m.g' => 'ccl', 'Ciclev10015131m.g' => 'ccl', 'Ciclev10015580m.g' => 'ccl', 'Ciclev10028359m.g' => 'ccl', 'Ciclev10028573m.g' => 'ccl', 'CiPaw.03G159300' => 'cil', 'CiPaw.04G115100' => 'cil', 'CiPaw.09G092800' => 'cil', 'CiPaw.10G071800' => 'cil', 'CiPaw.13G105800' => 'cil', 'CiPaw.13G141000' => 'cil', 'CiPaw.14G103400' => 'cil', 'ClCG01G012700' => 'cla', 'ClCG01G012720' => 'cla', 'ClCG01G021920' => 'cla', 'ClCG02G008870' => 'cla', 'ClCG02G020840' => 'cla', 'ClCG02G021930' => 'cla', 'COL.COLO4_19302' => 'col', 'COL.COLO4_25262' => 'col', 'COL.COLO4_31788' => 'col', 'Cpa.g.c34684' => 'cpa', 'Cpa.g.c36520.1' => 'cpa', 'Cpa.g.c45626' => 'cpa', 'Cpa.g.sc121.17' => 'cpa', 'Cpa.g.sc13.22' => 'cpa', 'Cpa.g.sc87.88' => 'cpa', 'Cre06.g261800' => 'cre', 'CsaV3_1G014500' => 'csa', 'CsaV3_1G014510' => 'csa', 'CsaV3_2G034880' => 'csa', 'CsaV3_6G014760' => 'csa', 'CsaV3_6G021500' => 'csa', 'CsaV3_6G048980' => 'csa', 'CSS0002511' => 'camsi', 'CSS0007556' => 'camsi', 'CSS0008532' => 'camsi', 'CSS0009709' => 'camsi', 'CSS0010486' => 'camsi', 'CSS0016768' => 'camsi', 'CSS0023512' => 'camsi', 'CSS0025341' => 'camsi', 'CSS0027999' => 'camsi', 'CSS0028944' => 'camsi', 'CSS0032292' => 'camsi', 'CSS0032464' => 'camsi', 'CSS0037153' => 'camsi', 'CSS0039256' => 'camsi', 'CSS0048392' => 'camsi', 'CSS0050458' => 'camsi', 'DCAR_004224' => 'dca', 'DCAR_006147' => 'dca', 'DCAR_006465' => 'dca', 'DCAR_008159' => 'dca', 'DCAR_012164' => 'dca', 'DCAR_019764' => 'dca', 'Dinv05418' => 'din', 'Dinv10839' => 'din', 'Dinv12521' => 'din', 'Dinv13900' => 'din', 'Dinv29426' => 'din', 'Duzib150G0263' => 'dzi', 'Duzib168G1178' => 'dzi', 'Duzib168G1924' => 'dzi', 'Duzib170G0299' => 'dzi', 'Duzib170G0813' => 'dzi', 'Duzib235G1128' => 'dzi', 'Duzib248G1060' => 'dzi', 'ECA232G1910' => 'eca', 'ECA233G4621' => 'eca', 'ECA238G1216' => 'eca', 'ECA238G1784' => 'eca', 'ECA248G1242' => 'eca', 'EL10Ac8g20071' => 'bvu', 'EL10Ac9g21086' => 'bvu', 'EL10Ac9g22407' => 'bvu', 'EL10Ac9g22412' => 'bvu', 'Eucgr.A01119' => 'egr', 'Eucgr.E04043' => 'egr', 'Eucgr.J00428' => 'egr', 'Eucgr.J00958' => 'egr', 'FAN11G3091' => 'fan', 'FAN11G3651' => 'fan', 'FAN16G2566' => 'fan', 'FAN21G3155' => 'fan', 'FAN21G3400' => 'fan', 'FAN21G3543' => 'fan', 'FAN25G0234' => 'fan', 'FAN25G1422' => 'fan', 'FAN25G3392' => 'fan', 'FvH4_3g01940' => 'fve', 'FvH4_3g29870' => 'fve', 'FvH4_3g33680' => 'fve', 'Glyma.09G004200' => 'gma', 'Glyma.11G151288' => 'gma', 'Glyma.11G189100' => 'gma', 'Glyma.12G072500' => 'gma', 'Glyma.12G085500' => 'gma', 'Glyma.12G181800' => 'gma', 'Glyma.12G193000' => 'gma', 'Glyma.13G309300' => 'gma', 'Glyma.13G319000' => 'gma', 'Glyma.17G012600' => 'gma', 'Gohir.A06G148600' => 'ghi', 'Gohir.A07G115800' => 'ghi', 'Gohir.A08G003600' => 'ghi', 'Gohir.A09G093300' => 'ghi', 'Gohir.A09G105400' => 'ghi', 'Gohir.A09G105500' => 'ghi', 'Gohir.D06G154600' => 'ghi', 'Gohir.D07G120200' => 'ghi', 'Gohir.D08G013900' => 'ghi', 'Gohir.D09G093100' => 'ghi', 'Gohir.D09G102200' => 'ghi', 'Gohir.D09G102300' => 'ghi', 'Gorai.001G129400' => 'gra', 'Gorai.004G008200' => 'gra', 'Gorai.006G109800' => 'gra', 'Gorai.006G119500' => 'gra', 'Gorai.006G121300' => 'gra', 'Gorai.010G180700' => 'gra', 'GSVIVG01012716001' => 'vvi', 'GSVIVG01025118001' => 'vvi', 'GSVIVG01030439001' => 'vvi', 'GSVIVG01031397001' => 'vvi', 'HanXRQChr01g0004201' => 'han', 'HanXRQChr02g0054941' => 'han', 'HanXRQChr05g0141811' => 'han', 'HanXRQChr07g0197751' => 'han', 'HanXRQChr11g0346691' => 'han', 'HanXRQChr13g0396971' => 'han', 'HanXRQChr14g0432951' => 'han', 'HanXRQChr14g0452001' => 'han', 'HanXRQChr15g0496681' => 'han', 'HanXRQChr17g0557491' => 'han', 'HanXRQChr17g0557501' => 'han', 'Haze_06809' => 'cav', 'Haze_12852' => 'cav', 'Haze_15850' => 'cav', 'Haze_23446' => 'cav', 'Haze_23942' => 'cav', 'Haze_23943' => 'cav', 'Hma1.2p1_0091F.1_g046450' => 'hma', 'Hma1.2p1_0128F.1_g059910' => 'hma', 'Hma1.2p1_0249F.1_g102260' => 'hma', 'Hma1.2p1_0453F.1_g156190' => 'hma', 'Hma1.2p1_0695F.1_g204380' => 'hma', 'Hma1.2p1_0749F.1_g212650' => 'hma', 'Hma1.2p1_2156F.1_g315420' => 'hma', 'Hma1.2p1_2686F.1_g326940' => 'hma', 'HPP92_006428' => 'vpl', 'HPP92_012069' => 'vpl', 'HPP92_014129' => 'vpl', 'HPP92_014133' => 'vpl', 'HPP92_017315' => 'vpl', 'HPP92_026445' => 'vpl', 'HPP92_026446' => 'vpl', 'Hund00774' => 'sun', 'Hund07682' => 'sun', 'Hund21413' => 'sun', 'Hund23462' => 'sun', 'Hund23463' => 'sun', 'Lalb_Chr03g0027911' => 'lal', 'Lalb_Chr13g0304271' => 'lal', 'Lalb_Chr19g0137471' => 'lal', 'Lalb_Chr22g0350651' => 'lal', 'Lalb_Chr24g0395151' => 'lal', 'Lj1A1231T40' => 'lonja', 'Lj1A221T48' => 'lonja', 'Lj1C924T12' => 'lonja', 'Lj2C993G6' => 'lonja', 'Lj3g0005790' => 'lja', 'Lj3g0015432' => 'lja', 'Lj3g0017722' => 'lja', 'Lj3g0018497' => 'lja', 'Lj4g0025071' => 'lja', 'Lsat_1_v5_gn_1_129680' => 'lsa', 'Lsat_1_v5_gn_2_25321' => 'lsa', 'Lsat_1_v5_gn_2_95461' => 'lsa', 'Lsat_1_v5_gn_4_159620' => 'lsa', 'Lsat_1_v5_gn_6_41301' => 'lsa', 'Lsat_1_v5_gn_6_74660' => 'lsa', 'Lsat_1_v5_gn_7_11520' => 'lsa', 'Lsat_1_v5_gn_9_67680' => 'lsa', 'Manes.04G008300' => 'mes', 'Manes.04G008400' => 'mes', 'Manes.04G026500' => 'mes', 'Manes.10G135300' => 'mes', 'Manes.11G157300' => 'mes', 'Manes.12G074000' => 'mes', 'Manes.16G006200' => 'mes', 'Manes.17G026400' => 'mes', 'Mapoly0024s0086' => 'mpo', 'Mapoly0024s0087' => 'mpo', 'Mapoly0071s0057' => 'mpo', 'Mapoly0204s0012' => 'mpo', 'MBI04_g37681_MAGBIO' => 'mbi', 'MBI05_g17779_MAGBIO' => 'mbi', 'MBI12_g31184_MAGBIO' => 'mbi', 'MBI17_g11083_MAGBIO' => 'mbi', 'MBI18_g03883_MAGBIO' => 'mbi', 'MBI18_g28940_MAGBIO' => 'mbi', 'MCO01G690' => 'mco', 'MD03G1109900' => 'mdo', 'MD03G1134800' => 'mdo', 'MD05G1348000' => 'mdo', 'MD10G1322400' => 'mdo', 'MD11G1123300' => 'mdo', 'MD11G1157600' => 'mdo', 'Medtr2g084875' => 'mtr', 'Medtr2g088130' => 'mtr', 'Medtr4g055310' => 'mtr', 'Medtr4g061070' => 'mtr', 'Medtr4g132250' => 'mtr', 'MELO3C004795.2' => 'cme', 'MELO3C004797.2' => 'cme', 'MELO3C007396.2' => 'cme', 'MELO3C019277.2' => 'cme', 'MELO3C021449.2' => 'cme', 'MELO3C025736.2' => 'cme', 'Migut.D02175' => 'egut', 'Migut.H01573' => 'egut', 'Migut.M01327' => 'egut', 'Migut.N02513' => 'egut', 'MSTRG.14638' => 'ama', 'MSTRG.18632' => 'ama', 'MSTRG.7203' => 'ama', 'Nitab4.5_0000533g0140' => 'nta', 'Nitab4.5_0000888g0150' => 'nta', 'Nitab4.5_0001453g0040' => 'nta', 'Nitab4.5_0002827g0090' => 'nta', 'Nitab4.5_0003082g0040' => 'nta', 'Nitab4.5_0007799g0040' => 'nta', 'Nitab4.5_0008983g0010' => 'nta', 'Nitab4.5_0009017g0020' => 'nta', 'Nn1g02132' => 'nnu', 'Nn1g03492' => 'nnu', 'Nn1g03493' => 'nnu', 'Nn1g03494' => 'nnu', 'Nn1g07164' => 'nnu', 'Nn1g07291' => 'nnu', 'Nn2g10655' => 'nnu', 'Nn2g11652' => 'nnu', 'Nn2g14008' => 'nnu', 'Nn3g17476' => 'nnu', 'Nn3g17477' => 'nnu', 'Nn4g22370' => 'nnu', 'Nn4g25255' => 'nnu', 'Nn5g27755' => 'nnu', 'Nn6g34260' => 'nnu', 'Nn6g35041' => 'nnu', 'Oeu005924.1' => 'oeu', 'Oeu008383.1' => 'oeu', 'Oeu014928.1' => 'oeu', 'Oeu019889.1' => 'oeu', 'Oeu022271.1' => 'oeu', 'Oeu025271.1' => 'oeu', 'Oeu036302.1' => 'oeu', 'Oeu044100.1' => 'oeu', 'Os01g0528300' => 'osa', 'Os03g0286200' => 'osa', 'Os04g0406600' => 'osa', 'Os07g0512000' => 'osa', 'Os07g0694600' => 'osa', 'Os08g0411000' => 'osa', 'Os09g0565700' => 'osa', 'Os09g0566050' => 'osa', 'Os10g0523700' => 'osa', 'Peaxi162Scf00002g00514' => 'pax', 'Peaxi162Scf00047g01817' => 'pax', 'Peaxi162Scf00114g00001' => 'pax', 'Peaxi162Scf00147g00613' => 'pax', 'Peaxi162Scf00389g00425' => 'pax', 'PGR042G1139' => 'pgr', 'PGR042G3273' => 'pgr', 'PGR102G2180' => 'pgr', 'PGR119G0234' => 'pgr', 'PGR119G0668' => 'pgr', 'PGSC0003DMG400007122' => 'stu', 'PGSC0003DMG400016478' => 'stu', 'PGSC0003DMG400025374' => 'stu', 'PGSC0003DMG400026536' => 'stu', 'Phvul.003G079600' => 'pvu', 'Phvul.005G115600' => 'pvu', 'Phvul.005G127100' => 'pvu', 'Phvul.006G149500' => 'pvu', 'Phvul.006G149600' => 'pvu', 'Phvul.011G071800' => 'pvu', 'Phvul.011G090400' => 'pvu', 'Potri.004G013400' => 'ptr', 'Potri.004G188100' => 'ptr', 'Potri.008G195500' => 'ptr', 'Potri.009G148800' => 'ptr', 'Potri.011G004700' => 'ptr', 'Pp3c17_22810' => 'ppa', 'Pp3c18_4480' => 'ppa', 'Pp3c19_13030' => 'ppa', 'Pp3c1_33620' => 'ppa', 'Pp3c2_9380' => 'ppa', 'PRCOL_00001023' => 'pco', 'Prupe.3G216300' => 'ppe', 'Prupe.4G019500' => 'ppe', 'Prupe.6G092500' => 'ppe', 'Prupe.6G119200' => 'ppe', 'Psat0s1945g0080' => 'psa', 'Psat0s4167g0040' => 'psa', 'Psat1g185800' => 'psa', 'Psat4g006440' => 'psa', 'Psat4g006480' => 'psa', 'Psat4g168120' => 'psa', 'Psat5g255680' => 'psa', 'Psat5g261760' => 'psa', 'Psat7g222120' => 'psa', 'PSO063G7252' => 'pso', 'PSO170G4778' => 'pso', 'PSO210G2249' => 'pso', 'PSO339G2411' => 'pso', 'PSO339G2457' => 'pso', 'PSO339G2854' => 'pso', 'PSO339G4288' => 'pso', 'PSO339G4615' => 'pso', 'PSO384G2796' => 'pso', 'PSO384G2940' => 'pso', 'PSO384G4227' => 'pso', 'PSO478G1425' => 'pso', 'PSO541G3863' => 'pso', 'PSO675G0507' => 'pso', 'PSO782G0338' => 'pso', 'PSO832G0644' => 'pso', 'QL01p013664' => 'qlo', 'QL01p036598' => 'qlo', 'QL05p072984' => 'qlo', 'QL08p005768' => 'qlo', 'QL08p032743' => 'qlo', 'QL93p0073_0439' => 'qlo', 'QL93p0073_0444' => 'qlo', 'RcHm_v2.0_Chr5g0002851' => 'rch', 'RcHm_v2.0_Chr5g0055201' => 'rch', 'RcHm_v2.0_Chr5g0061191' => 'rch', 'RcHm_v2.0_Chr7g0203231' => 'rch', 'Rhsim01G0208100' => 'rsi', 'Rhsim01G0208200' => 'rsi', 'Rhsim02G0106500' => 'rsi', 'Rhsim03G0107900' => 'rsi', 'Rhsim06G0163400' => 'rsi', 'Rhsim13G0105200' => 'rsi', 'Sabra04G0006300' => 'sbr', 'Sabra04G0127000' => 'sbr', 'Sabra08G0148700' => 'sbr', 'Sabra09G0117400' => 'sbr', 'SalBow1G3326' => 'sbo', 'SalBow3G3228' => 'sbo', 'SalBow6G1634' => 'sbo', 'SalBow6G3603' => 'sbo', 'SalBow6G5266' => 'sbo', 'SalBow7G2265' => 'sbo', 'SalBow8G0850' => 'sbo', 'SalBow8G2592' => 'sbo', 'Sc05g0009240' => 'sci', 'Sc12g0002300' => 'sci', 'Sc21g0000100' => 'sci', 'Sc21g0004720' => 'sci', 'Sed0002949' => 'sed', 'Sed0004114' => 'sed', 'Sed0004306' => 'sed', 'Sed0006172' => 'sed', 'Sed0008413' => 'sed', 'Sed0013809' => 'sed', 'Sed0019556' => 'sed', 'SEGI_03570' => 'sgi', 'SEGI_07859' => 'sgi', 'SEGI_15042' => 'sgi', 'SEGI_16263' => 'sgi', 'SEGI_16552' => 'sgi', 'SEGI_24331' => 'sgi', 'SEGI_27316' => 'sgi', 'SEGI_29521' => 'sgi', 'SEGI_41342' => 'sgi', 'SGA_v2.0_scaffold27G11617' => 'sas', 'SGA_v2.0_scaffold316G48428' => 'sas', 'SGA_v2.0_scaffold49G18261' => 'sas', 'SGA_v2.0_scaffold7G03831' => 'sas', 'SGA_v2.0_scaffold93G28359' => 'sas', 'SHI02210' => 'shi', 'SHI06028' => 'shi', 'SHI06321' => 'shi', 'SMO111G0012' => 'smo', 'SMO228G0080' => 'smo', 'SMO356G0756' => 'smo', 'Solyc02g080620.3' => 'sly', 'Solyc06g074530.1' => 'sly', 'Solyc11g066890.1' => 'sly', 'Solyc11g072520.3' => 'sly', 'Sopen02g025330' => 'spe', 'Sopen06g031000' => 'spe', 'Sopen09g008240' => 'spe', 'Sopen09g025210' => 'spe', 'Sopen11g026600' => 'spe', 'Sopen11g030170' => 'spe', 'Sp1g10420' => 'spa', 'Sp3g06570' => 'spa', 'Sp4g10660' => 'spa', 'Sp5g16460' => 'spa', 'Sp6g22710' => 'spa', 'TAR365G0112' => 'tar', 'TAR369G0717' => 'tar', 'TAR374G0976' => 'tar', 'TAR623G1128' => 'tar', 'TAR626G1937' => 'tar', 'TAR627G0123' => 'tar', 'TAR628G0305' => 'tar', 'TAR636G1176' => 'tar', 'TAR636G2442' => 'tar', 'THA.LOC104800556' => 'tha', 'THA.LOC104809501' => 'tha', 'THA.LOC104815126' => 'tha', 'THA.LOC104815732' => 'tha', 'THA.LOC104823528' => 'tha', 'Thecc.02G365600' => 'tca', 'Thecc.06G222300' => 'tca', 'Thecc.09G261800' => 'tca', 'Thecc.09G291400' => 'tca', 'Thhalv10003028m.g' => 'esa', 'Thhalv10007886m.g' => 'esa', 'Thhalv10016085m.g' => 'esa', 'Thhalv10016681m.g' => 'esa', 'Thhalv10020951m.g' => 'esa', 'TPR.G15598' => 'tpr', 'TPR.G29305' => 'tpr', 'TPR.G32395' => 'tpr', 'TPR.G36998' => 'tpr', 'TPR.G4227' => 'tpr', 'TWI18G1433' => 'twi', 'TWI31G0755' => 'twi', 'TWI38G0912' => 'twi', 'TWI75G1097' => 'twi', 'TWI75G1619' => 'twi', 'TWI79G1336' => 'twi', 'unitig_0.g943' => 'ugi', 'unitig_0.g944' => 'ugi', 'unitig_22.g6646' => 'ugi', 'unitig_37.g12681' => 'ugi', 'unitig_8.g3290' => 'ugi', 'vmacro03278' => 'vma', 'vmacro12197' => 'vma', 'vmacro14478' => 'vma', 'vmacro15787' => 'vma', 'vmacro15789' => 'vma', 'vmacro15790' => 'vma', 'vmacro15806' => 'vma', 'vmacro22907' => 'vma', 'vmacro22908' => 'vma', 'vmacro22909' => 'vma', 'vmacro23108' => 'vma', 'VMungo0540G0540' => 'vmu', 'VMungo0540G2468' => 'vmu', 'VMungo1080G0390' => 'vmu', 'VMungo1080G1165' => 'vmu', 'VMungo1127G0170' => 'vmu', 'VMungo1127G2099' => 'vmu', 'VMungo1215G3013' => 'vmu', 'Zm00001eb013110' => 'zma', 'Zm00001eb084260' => 'zma', 'Zm00001eb096110' => 'zma', 'Zm00001eb217510' => 'zma', 'Zm00001eb322550' => 'zma', 'Zm00001eb390770' => 'zma', 'Zm00001eb397170' => 'zma', 'Zm00001eb404610' => 'zma', 'Zm00001eb421790' => 'zma' ), 'gf_id' => 'HOM05D000911', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000911' ), 'data_identifier' => 'HOM05D000911', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000911', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27780' => 'bna', 'A03p35380' => 'bna', 'A04p21160' => 'bna', 'A05p40570' => 'bna', 'A06p26900' => 'bna', 'A08p33230' => 'bna', 'A09p65960' => 'bna', 'A10p18290' => 'bna', 'Aa31LG1G12990' => 'aar', 'Aa31LG1G2980' => 'aar', 'Aa31LG4G14320' => 'aar', 'Aa31LG7G11800' => 'aar', 'Aa31sc36G50' => 'aar', 'Aa31sc36G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3721' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5459' => 'aag', 'Actinidia03028' => 'ach', 'Actinidia03753' => 'ach', 'Actinidia04187' => 'ach', 'Actinidia05509' => 'ach', 'Actinidia24180' => 'ach', 'Actinidia26906' => 'ach', 'Actinidia37097' => 'ach', 'Actinidia38249' => 'ach', 'Ah.01g003470' => 'amhyb', 'Ah.01g004580' => 'amhyb', 'Ah.01g014850' => 'amhyb', 'Ah.01g016830' => 'amhyb', 'Ah.14g088000' => 'amhyb', 'AL1G22980' => 'aly', 'AL3G18990' => 'aly', 'AL4G22440' => 'aly', 'AL4G33180' => 'aly', 'AL5G22920' => 'aly', 'AL6G33660' => 'aly', 'AL8G20720' => 'aly', 'Aqoxy1G00935' => 'aox', 'Aqoxy1G02094' => 'aox', 'Aqoxy2G01239' => 'aox', 'Aqoxy4G01870' => 'aox', 'Aqoxy7G00450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.36ZVTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71EM27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5D6C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH3WRE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3NCM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RIM768' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YB5YRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z36GDV' => 'arhy', 'AT1G08250' => 'ath', 'AT1G11790' => 'ath', 'AT2G27820' => 'ath', 'AT3G07630' => 'ath', 'AT3G44720' => 'ath', 'AT5G22630' => 'ath', 'ATR0693G304' => 'atr', 'ATR0794G109' => 'atr', 'ATR0820G120' => 'atr', 'ATR1159G064' => 'atr', 'Atru.chr10.2239' => 'acertr', 'Atru.chr3.3371' => 'acertr', 'Atru.chr6.3202' => 'acertr', 'AUR62006499' => 'cqu', 'AUR62012718' => 'cqu', 'AUR62021938' => 'cqu', 'AUR62023932' => 'cqu', 'AUR62025034' => 'cqu', 'AUR62025035' => 'cqu', 'AUR62038307' => 'cqu', 'AUR62043466' => 'cqu', 'BcaB02g10748' => 'bca', 'BcaB03g13231' => 'bca', 'BcaB03g14689' => 'bca', 'BcaB05g22716' => 'bca', 'BcaB06g28172' => 'bca', 'BcaB08g36413' => 'bca', 'BcaC01g02186' => 'bca', 'BcaC01g04272' => 'bca', 'BcaC02g08080' => 'bca', 'BcaC02g08227' => 'bca', 'BcaC03g13901' => 'bca', 'BcaC04g19593' => 'bca', 'BcaC04g20874' => 'bca', 'BcaC05g29557' => 'bca', 'BcaC06g35505' => 'bca', 'BcaC07g41954' => 'bca', 'BcaC07g41955' => 'bca', 'BcaC07g41956' => 'bca', 'BcaC07g42519' => 'bca', 'BcaC07g42520' => 'bca', 'BcaC07g42523' => 'bca', 'BcaC07g42524' => 'bca', 'BcaC07g42525' => 'bca', 'BcaC08g47480' => 'bca', 'BcaC08g47481' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00530' => 'bna', 'BolC2t07178H' => 'bol', 'BolC3t16567H' => 'bol', 'BolC4t27234H' => 'bol', 'BolC5t29728H' => 'bol', 'BolC5t34622H' => 'bol', 'BolC6t40321H' => 'bol', 'BolC7t42028H' => 'bol', 'BolC8t49125H' => 'bol', 'BolC8t52538H' => 'bol', 'BolC8t52539H' => 'bol', 'BolC9t56681H' => 'bol', 'BolC9t58266H' => 'bol', 'BolSC21t60294H' => 'bol', 'BraA02t05670Z' => 'bra', 'BraA03t12716Z' => 'bra', 'BraA04t17685Z' => 'bra', 'BraA05t22788Z' => 'bra', 'BraA06t24032Z' => 'bra', 'BraA06t25625Z' => 'bra', 'BraA07t27930Z' => 'bra', 'BraA08t35242Z' => 'bra', 'BraA09t38609Z' => 'bra', 'BraA10t43905Z' => 'bra', 'C02p11060' => 'bna', 'C03p42990' => 'bna', 'C03p67310' => 'bna', 'C04p56990' => 'bna', 'C04p58660' => 'bna', 'C05p09890' => 'bna', 'C05p59680' => 'bna', 'C06p19830' => 'bna', 'C06p53040' => 'bna', 'C07p15230' => 'bna', 'C08p50070' => 'bna', 'C08p50090' => 'bna', 'C09p38330' => 'bna', 'C09p53940' => 'bna', 'CAN.G1014.1' => 'can', 'CAN.G644.30' => 'can', 'CAN.G84.47' => 'can', 'CAN.G919.8' => 'can', 'CANSAT54G0113' => 'cansat', 'CANSAT54G1286' => 'cansat', 'CANSAT64G1020' => 'cansat', 'CARHR008080' => 'chi', 'CARHR008090' => 'chi', 'CARHR012130' => 'chi', 'CARHR038390' => 'chi', 'CARHR082330' => 'chi', 'CARHR120520' => 'chi', 'CARHR151470' => 'chi', 'CARHR190950' => 'chi', 'Carub.0001s0760' => 'cru', 'Carub.0001s1146' => 'cru', 'Carub.0003s0721' => 'cru', 'Carub.0004s0858' => 'cru', 'Carub.0005s1040' => 'cru', 'Carub.0006s2035' => 'cru', 'Carub.0015s0005' => 'cru', 'Ca_01607_v3' => 'car', 'Ca_01677_v3' => 'car', 'Ca_06087_v3' => 'car', 'Ca_19238_v3' => 'car', 'Ca_19373_v3' => 'car', 'Ca_21079_v3' => 'car', 'CBR_g54016' => 'cbr', 'CBR_g54018' => 'cbr', 'CBR_g54020' => 'cbr', 'Cc01_g09780' => 'ccan', 'Cc01_g11680' => 'ccan', 'Cc02_g15610' => 'ccan', 'Cc05_g04350' => 'ccan', 'Cc09_g01580' => 'ccan', 'CDE01G0795' => 'cde', 'CDE02G2024' => 'cde', 'CDE02G2260' => 'cde', 'CDE02G4561' => 'cde', 'CDE05G2733' => 'cde', 'CDE05G3422' => 'cde', 'CDE06G2003' => 'cde', 'CDE08G0576' => 'cde', 'CDE09G0048' => 'cde', 'CDE11G0805' => 'cde', 'Cfa003644' => 'cfa', 'Cfa006290' => 'cfa', 'Cfa010080' => 'cfa', 'Cfa011376' => 'cfa', 'Cfa011576' => 'cfa', 'Cfa011577' => 'cfa', 'Cfa014389' => 'cfa', 'Ciclev10006044m.g' => 'ccl', 'Ciclev10006954m.g' => 'ccl', 'Ciclev10015131m.g' => 'ccl', 'Ciclev10015580m.g' => 'ccl', 'Ciclev10028359m.g' => 'ccl', 'Ciclev10028573m.g' => 'ccl', 'CiPaw.03G159300' => 'cil', 'CiPaw.04G115100' => 'cil', 'CiPaw.09G092800' => 'cil', 'CiPaw.10G071800' => 'cil', 'CiPaw.13G105800' => 'cil', 'CiPaw.13G141000' => 'cil', 'CiPaw.14G103400' => 'cil', 'ClCG01G012700' => 'cla', 'ClCG01G012720' => 'cla', 'ClCG01G021920' => 'cla', 'ClCG02G008870' => 'cla', 'ClCG02G020840' => 'cla', 'ClCG02G021930' => 'cla', 'COL.COLO4_19302' => 'col', 'COL.COLO4_25262' => 'col', 'COL.COLO4_31788' => 'col', 'Cpa.g.c34684' => 'cpa', 'Cpa.g.c36520.1' => 'cpa', 'Cpa.g.c45626' => 'cpa', 'Cpa.g.sc121.17' => 'cpa', 'Cpa.g.sc13.22' => 'cpa', 'Cpa.g.sc87.88' => 'cpa', 'Cre06.g261800' => 'cre', 'CsaV3_1G014500' => 'csa', 'CsaV3_1G014510' => 'csa', 'CsaV3_2G034880' => 'csa', 'CsaV3_6G014760' => 'csa', 'CsaV3_6G021500' => 'csa', 'CsaV3_6G048980' => 'csa', 'CSS0002511' => 'camsi', 'CSS0007556' => 'camsi', 'CSS0008532' => 'camsi', 'CSS0009709' => 'camsi', 'CSS0010486' => 'camsi', 'CSS0016768' => 'camsi', 'CSS0023512' => 'camsi', 'CSS0025341' => 'camsi', 'CSS0027999' => 'camsi', 'CSS0028944' => 'camsi', 'CSS0032292' => 'camsi', 'CSS0032464' => 'camsi', 'CSS0037153' => 'camsi', 'CSS0039256' => 'camsi', 'CSS0048392' => 'camsi', 'CSS0050458' => 'camsi', 'DCAR_004224' => 'dca', 'DCAR_006147' => 'dca', 'DCAR_006465' => 'dca', 'DCAR_008159' => 'dca', 'DCAR_012164' => 'dca', 'DCAR_019764' => 'dca', 'Dinv05418' => 'din', 'Dinv10839' => 'din', 'Dinv12521' => 'din', 'Dinv13900' => 'din', 'Dinv29426' => 'din', 'Duzib150G0263' => 'dzi', 'Duzib168G1178' => 'dzi', 'Duzib168G1924' => 'dzi', 'Duzib170G0299' => 'dzi', 'Duzib170G0813' => 'dzi', 'Duzib235G1128' => 'dzi', 'Duzib248G1060' => 'dzi', 'ECA232G1910' => 'eca', 'ECA233G4621' => 'eca', 'ECA238G1216' => 'eca', 'ECA238G1784' => 'eca', 'ECA248G1242' => 'eca', 'EL10Ac8g20071' => 'bvu', 'EL10Ac9g21086' => 'bvu', 'EL10Ac9g22407' => 'bvu', 'EL10Ac9g22412' => 'bvu', 'Eucgr.A01119' => 'egr', 'Eucgr.E04043' => 'egr', 'Eucgr.J00428' => 'egr', 'Eucgr.J00958' => 'egr', 'FAN11G3091' => 'fan', 'FAN11G3651' => 'fan', 'FAN16G2566' => 'fan', 'FAN21G3155' => 'fan', 'FAN21G3400' => 'fan', 'FAN21G3543' => 'fan', 'FAN25G0234' => 'fan', 'FAN25G1422' => 'fan', 'FAN25G3392' => 'fan', 'FvH4_3g01940' => 'fve', 'FvH4_3g29870' => 'fve', 'FvH4_3g33680' => 'fve', 'Glyma.09G004200' => 'gma', 'Glyma.11G151288' => 'gma', 'Glyma.11G189100' => 'gma', 'Glyma.12G072500' => 'gma', 'Glyma.12G085500' => 'gma', 'Glyma.12G181800' => 'gma', 'Glyma.12G193000' => 'gma', 'Glyma.13G309300' => 'gma', 'Glyma.13G319000' => 'gma', 'Glyma.17G012600' => 'gma', 'Gohir.A06G148600' => 'ghi', 'Gohir.A07G115800' => 'ghi', 'Gohir.A08G003600' => 'ghi', 'Gohir.A09G093300' => 'ghi', 'Gohir.A09G105400' => 'ghi', 'Gohir.A09G105500' => 'ghi', 'Gohir.D06G154600' => 'ghi', 'Gohir.D07G120200' => 'ghi', 'Gohir.D08G013900' => 'ghi', 'Gohir.D09G093100' => 'ghi', 'Gohir.D09G102200' => 'ghi', 'Gohir.D09G102300' => 'ghi', 'Gorai.001G129400' => 'gra', 'Gorai.004G008200' => 'gra', 'Gorai.006G109800' => 'gra', 'Gorai.006G119500' => 'gra', 'Gorai.006G121300' => 'gra', 'Gorai.010G180700' => 'gra', 'GSVIVG01012716001' => 'vvi', 'GSVIVG01025118001' => 'vvi', 'GSVIVG01030439001' => 'vvi', 'GSVIVG01031397001' => 'vvi', 'HanXRQChr01g0004201' => 'han', 'HanXRQChr02g0054941' => 'han', 'HanXRQChr05g0141811' => 'han', 'HanXRQChr07g0197751' => 'han', 'HanXRQChr11g0346691' => 'han', 'HanXRQChr13g0396971' => 'han', 'HanXRQChr14g0432951' => 'han', 'HanXRQChr14g0452001' => 'han', 'HanXRQChr15g0496681' => 'han', 'HanXRQChr17g0557491' => 'han', 'HanXRQChr17g0557501' => 'han', 'Haze_06809' => 'cav', 'Haze_12852' => 'cav', 'Haze_15850' => 'cav', 'Haze_23446' => 'cav', 'Haze_23942' => 'cav', 'Haze_23943' => 'cav', 'Hma1.2p1_0091F.1_g046450' => 'hma', 'Hma1.2p1_0128F.1_g059910' => 'hma', 'Hma1.2p1_0249F.1_g102260' => 'hma', 'Hma1.2p1_0453F.1_g156190' => 'hma', 'Hma1.2p1_0695F.1_g204380' => 'hma', 'Hma1.2p1_0749F.1_g212650' => 'hma', 'Hma1.2p1_2156F.1_g315420' => 'hma', 'Hma1.2p1_2686F.1_g326940' => 'hma', 'HPP92_006428' => 'vpl', 'HPP92_012069' => 'vpl', 'HPP92_014129' => 'vpl', 'HPP92_014133' => 'vpl', 'HPP92_017315' => 'vpl', 'HPP92_026445' => 'vpl', 'HPP92_026446' => 'vpl', 'Hund00774' => 'sun', 'Hund07682' => 'sun', 'Hund21413' => 'sun', 'Hund23462' => 'sun', 'Hund23463' => 'sun', 'Lalb_Chr03g0027911' => 'lal', 'Lalb_Chr13g0304271' => 'lal', 'Lalb_Chr19g0137471' => 'lal', 'Lalb_Chr22g0350651' => 'lal', 'Lalb_Chr24g0395151' => 'lal', 'Lj1A1231T40' => 'lonja', 'Lj1A221T48' => 'lonja', 'Lj1C924T12' => 'lonja', 'Lj2C993G6' => 'lonja', 'Lj3g0005790' => 'lja', 'Lj3g0015432' => 'lja', 'Lj3g0017722' => 'lja', 'Lj3g0018497' => 'lja', 'Lj4g0025071' => 'lja', 'Lsat_1_v5_gn_1_129680' => 'lsa', 'Lsat_1_v5_gn_2_25321' => 'lsa', 'Lsat_1_v5_gn_2_95461' => 'lsa', 'Lsat_1_v5_gn_4_159620' => 'lsa', 'Lsat_1_v5_gn_6_41301' => 'lsa', 'Lsat_1_v5_gn_6_74660' => 'lsa', 'Lsat_1_v5_gn_7_11520' => 'lsa', 'Lsat_1_v5_gn_9_67680' => 'lsa', 'Manes.04G008300' => 'mes', 'Manes.04G008400' => 'mes', 'Manes.04G026500' => 'mes', 'Manes.10G135300' => 'mes', 'Manes.11G157300' => 'mes', 'Manes.12G074000' => 'mes', 'Manes.16G006200' => 'mes', 'Manes.17G026400' => 'mes', 'Mapoly0024s0086' => 'mpo', 'Mapoly0024s0087' => 'mpo', 'Mapoly0071s0057' => 'mpo', 'Mapoly0204s0012' => 'mpo', 'MBI04_g37681_MAGBIO' => 'mbi', 'MBI05_g17779_MAGBIO' => 'mbi', 'MBI12_g31184_MAGBIO' => 'mbi', 'MBI17_g11083_MAGBIO' => 'mbi', 'MBI18_g03883_MAGBIO' => 'mbi', 'MBI18_g28940_MAGBIO' => 'mbi', 'MCO01G690' => 'mco', 'MD03G1109900' => 'mdo', 'MD03G1134800' => 'mdo', 'MD05G1348000' => 'mdo', 'MD10G1322400' => 'mdo', 'MD11G1123300' => 'mdo', 'MD11G1157600' => 'mdo', 'Medtr2g084875' => 'mtr', 'Medtr2g088130' => 'mtr', 'Medtr4g055310' => 'mtr', 'Medtr4g061070' => 'mtr', 'Medtr4g132250' => 'mtr', 'MELO3C004795.2' => 'cme', 'MELO3C004797.2' => 'cme', 'MELO3C007396.2' => 'cme', 'MELO3C019277.2' => 'cme', 'MELO3C021449.2' => 'cme', 'MELO3C025736.2' => 'cme', 'Migut.D02175' => 'egut', 'Migut.H01573' => 'egut', 'Migut.M01327' => 'egut', 'Migut.N02513' => 'egut', 'MSTRG.14638' => 'ama', 'MSTRG.18632' => 'ama', 'MSTRG.7203' => 'ama', 'Nitab4.5_0000533g0140' => 'nta', 'Nitab4.5_0000888g0150' => 'nta', 'Nitab4.5_0001453g0040' => 'nta', 'Nitab4.5_0002827g0090' => 'nta', 'Nitab4.5_0003082g0040' => 'nta', 'Nitab4.5_0007799g0040' => 'nta', 'Nitab4.5_0008983g0010' => 'nta', 'Nitab4.5_0009017g0020' => 'nta', 'Nn1g02132' => 'nnu', 'Nn1g03492' => 'nnu', 'Nn1g03493' => 'nnu', 'Nn1g03494' => 'nnu', 'Nn1g07164' => 'nnu', 'Nn1g07291' => 'nnu', 'Nn2g10655' => 'nnu', 'Nn2g11652' => 'nnu', 'Nn2g14008' => 'nnu', 'Nn3g17476' => 'nnu', 'Nn3g17477' => 'nnu', 'Nn4g22370' => 'nnu', 'Nn4g25255' => 'nnu', 'Nn5g27755' => 'nnu', 'Nn6g34260' => 'nnu', 'Nn6g35041' => 'nnu', 'Oeu005924.1' => 'oeu', 'Oeu008383.1' => 'oeu', 'Oeu014928.1' => 'oeu', 'Oeu019889.1' => 'oeu', 'Oeu022271.1' => 'oeu', 'Oeu025271.1' => 'oeu', 'Oeu036302.1' => 'oeu', 'Oeu044100.1' => 'oeu', 'Os01g0528300' => 'osa', 'Os03g0286200' => 'osa', 'Os04g0406600' => 'osa', 'Os07g0512000' => 'osa', 'Os07g0694600' => 'osa', 'Os08g0411000' => 'osa', 'Os09g0565700' => 'osa', 'Os09g0566050' => 'osa', 'Os10g0523700' => 'osa', 'Peaxi162Scf00002g00514' => 'pax', 'Peaxi162Scf00047g01817' => 'pax', 'Peaxi162Scf00114g00001' => 'pax', 'Peaxi162Scf00147g00613' => 'pax', 'Peaxi162Scf00389g00425' => 'pax', 'PGR042G1139' => 'pgr', 'PGR042G3273' => 'pgr', 'PGR102G2180' => 'pgr', 'PGR119G0234' => 'pgr', 'PGR119G0668' => 'pgr', 'PGSC0003DMG400007122' => 'stu', 'PGSC0003DMG400016478' => 'stu', 'PGSC0003DMG400025374' => 'stu', 'PGSC0003DMG400026536' => 'stu', 'Phvul.003G079600' => 'pvu', 'Phvul.005G115600' => 'pvu', 'Phvul.005G127100' => 'pvu', 'Phvul.006G149500' => 'pvu', 'Phvul.006G149600' => 'pvu', 'Phvul.011G071800' => 'pvu', 'Phvul.011G090400' => 'pvu', 'Potri.004G013400' => 'ptr', 'Potri.004G188100' => 'ptr', 'Potri.008G195500' => 'ptr', 'Potri.009G148800' => 'ptr', 'Potri.011G004700' => 'ptr', 'Pp3c17_22810' => 'ppa', 'Pp3c18_4480' => 'ppa', 'Pp3c19_13030' => 'ppa', 'Pp3c1_33620' => 'ppa', 'Pp3c2_9380' => 'ppa', 'PRCOL_00001023' => 'pco', 'Prupe.3G216300' => 'ppe', 'Prupe.4G019500' => 'ppe', 'Prupe.6G092500' => 'ppe', 'Prupe.6G119200' => 'ppe', 'Psat0s1945g0080' => 'psa', 'Psat0s4167g0040' => 'psa', 'Psat1g185800' => 'psa', 'Psat4g006440' => 'psa', 'Psat4g006480' => 'psa', 'Psat4g168120' => 'psa', 'Psat5g255680' => 'psa', 'Psat5g261760' => 'psa', 'Psat7g222120' => 'psa', 'PSO063G7252' => 'pso', 'PSO170G4778' => 'pso', 'PSO210G2249' => 'pso', 'PSO339G2411' => 'pso', 'PSO339G2457' => 'pso', 'PSO339G2854' => 'pso', 'PSO339G4288' => 'pso', 'PSO339G4615' => 'pso', 'PSO384G2796' => 'pso', 'PSO384G2940' => 'pso', 'PSO384G4227' => 'pso', 'PSO478G1425' => 'pso', 'PSO541G3863' => 'pso', 'PSO675G0507' => 'pso', 'PSO782G0338' => 'pso', 'PSO832G0644' => 'pso', 'QL01p013664' => 'qlo', 'QL01p036598' => 'qlo', 'QL05p072984' => 'qlo', 'QL08p005768' => 'qlo', 'QL08p032743' => 'qlo', 'QL93p0073_0439' => 'qlo', 'QL93p0073_0444' => 'qlo', 'RcHm_v2.0_Chr5g0002851' => 'rch', 'RcHm_v2.0_Chr5g0055201' => 'rch', 'RcHm_v2.0_Chr5g0061191' => 'rch', 'RcHm_v2.0_Chr7g0203231' => 'rch', 'Rhsim01G0208100' => 'rsi', 'Rhsim01G0208200' => 'rsi', 'Rhsim02G0106500' => 'rsi', 'Rhsim03G0107900' => 'rsi', 'Rhsim06G0163400' => 'rsi', 'Rhsim13G0105200' => 'rsi', 'Sabra04G0006300' => 'sbr', 'Sabra04G0127000' => 'sbr', 'Sabra08G0148700' => 'sbr', 'Sabra09G0117400' => 'sbr', 'SalBow1G3326' => 'sbo', 'SalBow3G3228' => 'sbo', 'SalBow6G1634' => 'sbo', 'SalBow6G3603' => 'sbo', 'SalBow6G5266' => 'sbo', 'SalBow7G2265' => 'sbo', 'SalBow8G0850' => 'sbo', 'SalBow8G2592' => 'sbo', 'Sc05g0009240' => 'sci', 'Sc12g0002300' => 'sci', 'Sc21g0000100' => 'sci', 'Sc21g0004720' => 'sci', 'Sed0002949' => 'sed', 'Sed0004114' => 'sed', 'Sed0004306' => 'sed', 'Sed0006172' => 'sed', 'Sed0008413' => 'sed', 'Sed0013809' => 'sed', 'Sed0019556' => 'sed', 'SEGI_03570' => 'sgi', 'SEGI_07859' => 'sgi', 'SEGI_15042' => 'sgi', 'SEGI_16263' => 'sgi', 'SEGI_16552' => 'sgi', 'SEGI_24331' => 'sgi', 'SEGI_27316' => 'sgi', 'SEGI_29521' => 'sgi', 'SEGI_41342' => 'sgi', 'SGA_v2.0_scaffold27G11617' => 'sas', 'SGA_v2.0_scaffold316G48428' => 'sas', 'SGA_v2.0_scaffold49G18261' => 'sas', 'SGA_v2.0_scaffold7G03831' => 'sas', 'SGA_v2.0_scaffold93G28359' => 'sas', 'SHI02210' => 'shi', 'SHI06028' => 'shi', 'SHI06321' => 'shi', 'SMO111G0012' => 'smo', 'SMO228G0080' => 'smo', 'SMO356G0756' => 'smo', 'Solyc02g080620.3' => 'sly', 'Solyc06g074530.1' => 'sly', 'Solyc11g066890.1' => 'sly', 'Solyc11g072520.3' => 'sly', 'Sopen02g025330' => 'spe', 'Sopen06g031000' => 'spe', 'Sopen09g008240' => 'spe', 'Sopen09g025210' => 'spe', 'Sopen11g026600' => 'spe', 'Sopen11g030170' => 'spe', 'Sp1g10420' => 'spa', 'Sp3g06570' => 'spa', 'Sp4g10660' => 'spa', 'Sp5g16460' => 'spa', 'Sp6g22710' => 'spa', 'TAR365G0112' => 'tar', 'TAR369G0717' => 'tar', 'TAR374G0976' => 'tar', 'TAR623G1128' => 'tar', 'TAR626G1937' => 'tar', 'TAR627G0123' => 'tar', 'TAR628G0305' => 'tar', 'TAR636G1176' => 'tar', 'TAR636G2442' => 'tar', 'THA.LOC104800556' => 'tha', 'THA.LOC104809501' => 'tha', 'THA.LOC104815126' => 'tha', 'THA.LOC104815732' => 'tha', 'THA.LOC104823528' => 'tha', 'Thecc.02G365600' => 'tca', 'Thecc.06G222300' => 'tca', 'Thecc.09G261800' => 'tca', 'Thecc.09G291400' => 'tca', 'Thhalv10003028m.g' => 'esa', 'Thhalv10007886m.g' => 'esa', 'Thhalv10016085m.g' => 'esa', 'Thhalv10016681m.g' => 'esa', 'Thhalv10020951m.g' => 'esa', 'TPR.G15598' => 'tpr', 'TPR.G29305' => 'tpr', 'TPR.G32395' => 'tpr', 'TPR.G36998' => 'tpr', 'TPR.G4227' => 'tpr', 'TWI18G1433' => 'twi', 'TWI31G0755' => 'twi', 'TWI38G0912' => 'twi', 'TWI75G1097' => 'twi', 'TWI75G1619' => 'twi', 'TWI79G1336' => 'twi', 'unitig_0.g943' => 'ugi', 'unitig_0.g944' => 'ugi', 'unitig_22.g6646' => 'ugi', 'unitig_37.g12681' => 'ugi', 'unitig_8.g3290' => 'ugi', 'vmacro03278' => 'vma', 'vmacro12197' => 'vma', 'vmacro14478' => 'vma', 'vmacro15787' => 'vma', 'vmacro15789' => 'vma', 'vmacro15790' => 'vma', 'vmacro15806' => 'vma', 'vmacro22907' => 'vma', 'vmacro22908' => 'vma', 'vmacro22909' => 'vma', 'vmacro23108' => 'vma', 'VMungo0540G0540' => 'vmu', 'VMungo0540G2468' => 'vmu', 'VMungo1080G0390' => 'vmu', 'VMungo1080G1165' => 'vmu', 'VMungo1127G0170' => 'vmu', 'VMungo1127G2099' => 'vmu', 'VMungo1215G3013' => 'vmu', 'Zm00001eb013110' => 'zma', 'Zm00001eb084260' => 'zma', 'Zm00001eb096110' => 'zma', 'Zm00001eb217510' => 'zma', 'Zm00001eb322550' => 'zma', 'Zm00001eb390770' => 'zma', 'Zm00001eb397170' => 'zma', 'Zm00001eb404610' => 'zma', 'Zm00001eb421790' => 'zma' ) $gf_id = 'HOM05D000911' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000911' ) $data_identifier = 'HOM05D000911' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 16, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 5, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 6, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 8, 'nnu' => (int) 16, 'oeu' => (int) 8, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 5, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 16, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421790' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000911', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27780' => 'bna', 'A03p35380' => 'bna', 'A04p21160' => 'bna', 'A05p40570' => 'bna', 'A06p26900' => 'bna', 'A08p33230' => 'bna', 'A09p65960' => 'bna', 'A10p18290' => 'bna', 'Aa31LG1G12990' => 'aar', 'Aa31LG1G2980' => 'aar', 'Aa31LG4G14320' => 'aar', 'Aa31LG7G11800' => 'aar', 'Aa31sc36G50' => 'aar', 'Aa31sc36G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3721' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5459' => 'aag', 'Actinidia03028' => 'ach', 'Actinidia03753' => 'ach', 'Actinidia04187' => 'ach', 'Actinidia05509' => 'ach', 'Actinidia24180' => 'ach', 'Actinidia26906' => 'ach', 'Actinidia37097' => 'ach', 'Actinidia38249' => 'ach', 'Ah.01g003470' => 'amhyb', 'Ah.01g004580' => 'amhyb', 'Ah.01g014850' => 'amhyb', 'Ah.01g016830' => 'amhyb', 'Ah.14g088000' => 'amhyb', 'AL1G22980' => 'aly', 'AL3G18990' => 'aly', 'AL4G22440' => 'aly', 'AL4G33180' => 'aly', 'AL5G22920' => 'aly', 'AL6G33660' => 'aly', 'AL8G20720' => 'aly', 'Aqoxy1G00935' => 'aox', 'Aqoxy1G02094' => 'aox', 'Aqoxy2G01239' => 'aox', 'Aqoxy4G01870' => 'aox', 'Aqoxy7G00450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.36ZVTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71EM27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5D6C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH3WRE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3NCM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RIM768' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YB5YRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z36GDV' => 'arhy', 'AT1G08250' => 'ath', 'AT1G11790' => 'ath', 'AT2G27820' => 'ath', 'AT3G07630' => 'ath', 'AT3G44720' => 'ath', 'AT5G22630' => 'ath', 'ATR0693G304' => 'atr', 'ATR0794G109' => 'atr', 'ATR0820G120' => 'atr', 'ATR1159G064' => 'atr', 'Atru.chr10.2239' => 'acertr', 'Atru.chr3.3371' => 'acertr', 'Atru.chr6.3202' => 'acertr', 'AUR62006499' => 'cqu', 'AUR62012718' => 'cqu', 'AUR62021938' => 'cqu', 'AUR62023932' => 'cqu', 'AUR62025034' => 'cqu', 'AUR62025035' => 'cqu', 'AUR62038307' => 'cqu', 'AUR62043466' => 'cqu', 'BcaB02g10748' => 'bca', 'BcaB03g13231' => 'bca', 'BcaB03g14689' => 'bca', 'BcaB05g22716' => 'bca', 'BcaB06g28172' => 'bca', 'BcaB08g36413' => 'bca', 'BcaC01g02186' => 'bca', 'BcaC01g04272' => 'bca', 'BcaC02g08080' => 'bca', 'BcaC02g08227' => 'bca', 'BcaC03g13901' => 'bca', 'BcaC04g19593' => 'bca', 'BcaC04g20874' => 'bca', 'BcaC05g29557' => 'bca', 'BcaC06g35505' => 'bca', 'BcaC07g41954' => 'bca', 'BcaC07g41955' => 'bca', 'BcaC07g41956' => 'bca', 'BcaC07g42519' => 'bca', 'BcaC07g42520' => 'bca', 'BcaC07g42523' => 'bca', 'BcaC07g42524' => 'bca', 'BcaC07g42525' => 'bca', 'BcaC08g47480' => 'bca', 'BcaC08g47481' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00530' => 'bna', 'BolC2t07178H' => 'bol', 'BolC3t16567H' => 'bol', 'BolC4t27234H' => 'bol', 'BolC5t29728H' => 'bol', 'BolC5t34622H' => 'bol', 'BolC6t40321H' => 'bol', 'BolC7t42028H' => 'bol', 'BolC8t49125H' => 'bol', 'BolC8t52538H' => 'bol', 'BolC8t52539H' => 'bol', 'BolC9t56681H' => 'bol', 'BolC9t58266H' => 'bol', 'BolSC21t60294H' => 'bol', 'BraA02t05670Z' => 'bra', 'BraA03t12716Z' => 'bra', 'BraA04t17685Z' => 'bra', 'BraA05t22788Z' => 'bra', 'BraA06t24032Z' => 'bra', 'BraA06t25625Z' => 'bra', 'BraA07t27930Z' => 'bra', 'BraA08t35242Z' => 'bra', 'BraA09t38609Z' => 'bra', 'BraA10t43905Z' => 'bra', 'C02p11060' => 'bna', 'C03p42990' => 'bna', 'C03p67310' => 'bna', 'C04p56990' => 'bna', 'C04p58660' => 'bna', 'C05p09890' => 'bna', 'C05p59680' => 'bna', 'C06p19830' => 'bna', 'C06p53040' => 'bna', 'C07p15230' => 'bna', 'C08p50070' => 'bna', 'C08p50090' => 'bna', 'C09p38330' => 'bna', 'C09p53940' => 'bna', 'CAN.G1014.1' => 'can', 'CAN.G644.30' => 'can', 'CAN.G84.47' => 'can', 'CAN.G919.8' => 'can', 'CANSAT54G0113' => 'cansat', 'CANSAT54G1286' => 'cansat', 'CANSAT64G1020' => 'cansat', 'CARHR008080' => 'chi', 'CARHR008090' => 'chi', 'CARHR012130' => 'chi', 'CARHR038390' => 'chi', 'CARHR082330' => 'chi', 'CARHR120520' => 'chi', 'CARHR151470' => 'chi', 'CARHR190950' => 'chi', 'Carub.0001s0760' => 'cru', 'Carub.0001s1146' => 'cru', 'Carub.0003s0721' => 'cru', 'Carub.0004s0858' => 'cru', 'Carub.0005s1040' => 'cru', 'Carub.0006s2035' => 'cru', 'Carub.0015s0005' => 'cru', 'Ca_01607_v3' => 'car', 'Ca_01677_v3' => 'car', 'Ca_06087_v3' => 'car', 'Ca_19238_v3' => 'car', 'Ca_19373_v3' => 'car', 'Ca_21079_v3' => 'car', 'CBR_g54016' => 'cbr', 'CBR_g54018' => 'cbr', 'CBR_g54020' => 'cbr', 'Cc01_g09780' => 'ccan', 'Cc01_g11680' => 'ccan', 'Cc02_g15610' => 'ccan', 'Cc05_g04350' => 'ccan', 'Cc09_g01580' => 'ccan', 'CDE01G0795' => 'cde', 'CDE02G2024' => 'cde', 'CDE02G2260' => 'cde', 'CDE02G4561' => 'cde', 'CDE05G2733' => 'cde', 'CDE05G3422' => 'cde', 'CDE06G2003' => 'cde', 'CDE08G0576' => 'cde', 'CDE09G0048' => 'cde', 'CDE11G0805' => 'cde', 'Cfa003644' => 'cfa', 'Cfa006290' => 'cfa', 'Cfa010080' => 'cfa', 'Cfa011376' => 'cfa', 'Cfa011576' => 'cfa', 'Cfa011577' => 'cfa', 'Cfa014389' => 'cfa', 'Ciclev10006044m.g' => 'ccl', 'Ciclev10006954m.g' => 'ccl', 'Ciclev10015131m.g' => 'ccl', 'Ciclev10015580m.g' => 'ccl', 'Ciclev10028359m.g' => 'ccl', 'Ciclev10028573m.g' => 'ccl', 'CiPaw.03G159300' => 'cil', 'CiPaw.04G115100' => 'cil', 'CiPaw.09G092800' => 'cil', 'CiPaw.10G071800' => 'cil', 'CiPaw.13G105800' => 'cil', 'CiPaw.13G141000' => 'cil', 'CiPaw.14G103400' => 'cil', 'ClCG01G012700' => 'cla', 'ClCG01G012720' => 'cla', 'ClCG01G021920' => 'cla', 'ClCG02G008870' => 'cla', 'ClCG02G020840' => 'cla', 'ClCG02G021930' => 'cla', 'COL.COLO4_19302' => 'col', 'COL.COLO4_25262' => 'col', 'COL.COLO4_31788' => 'col', 'Cpa.g.c34684' => 'cpa', 'Cpa.g.c36520.1' => 'cpa', 'Cpa.g.c45626' => 'cpa', 'Cpa.g.sc121.17' => 'cpa', 'Cpa.g.sc13.22' => 'cpa', 'Cpa.g.sc87.88' => 'cpa', 'Cre06.g261800' => 'cre', 'CsaV3_1G014500' => 'csa', 'CsaV3_1G014510' => 'csa', 'CsaV3_2G034880' => 'csa', 'CsaV3_6G014760' => 'csa', 'CsaV3_6G021500' => 'csa', 'CsaV3_6G048980' => 'csa', 'CSS0002511' => 'camsi', 'CSS0007556' => 'camsi', 'CSS0008532' => 'camsi', 'CSS0009709' => 'camsi', 'CSS0010486' => 'camsi', 'CSS0016768' => 'camsi', 'CSS0023512' => 'camsi', 'CSS0025341' => 'camsi', 'CSS0027999' => 'camsi', 'CSS0028944' => 'camsi', 'CSS0032292' => 'camsi', 'CSS0032464' => 'camsi', 'CSS0037153' => 'camsi', 'CSS0039256' => 'camsi', 'CSS0048392' => 'camsi', 'CSS0050458' => 'camsi', 'DCAR_004224' => 'dca', 'DCAR_006147' => 'dca', 'DCAR_006465' => 'dca', 'DCAR_008159' => 'dca', 'DCAR_012164' => 'dca', 'DCAR_019764' => 'dca', 'Dinv05418' => 'din', 'Dinv10839' => 'din', 'Dinv12521' => 'din', 'Dinv13900' => 'din', 'Dinv29426' => 'din', 'Duzib150G0263' => 'dzi', 'Duzib168G1178' => 'dzi', 'Duzib168G1924' => 'dzi', 'Duzib170G0299' => 'dzi', 'Duzib170G0813' => 'dzi', 'Duzib235G1128' => 'dzi', 'Duzib248G1060' => 'dzi', 'ECA232G1910' => 'eca', 'ECA233G4621' => 'eca', 'ECA238G1216' => 'eca', 'ECA238G1784' => 'eca', 'ECA248G1242' => 'eca', 'EL10Ac8g20071' => 'bvu', 'EL10Ac9g21086' => 'bvu', 'EL10Ac9g22407' => 'bvu', 'EL10Ac9g22412' => 'bvu', 'Eucgr.A01119' => 'egr', 'Eucgr.E04043' => 'egr', 'Eucgr.J00428' => 'egr', 'Eucgr.J00958' => 'egr', 'FAN11G3091' => 'fan', 'FAN11G3651' => 'fan', 'FAN16G2566' => 'fan', 'FAN21G3155' => 'fan', 'FAN21G3400' => 'fan', 'FAN21G3543' => 'fan', 'FAN25G0234' => 'fan', 'FAN25G1422' => 'fan', 'FAN25G3392' => 'fan', 'FvH4_3g01940' => 'fve', 'FvH4_3g29870' => 'fve', 'FvH4_3g33680' => 'fve', 'Glyma.09G004200' => 'gma', 'Glyma.11G151288' => 'gma', 'Glyma.11G189100' => 'gma', 'Glyma.12G072500' => 'gma', 'Glyma.12G085500' => 'gma', 'Glyma.12G181800' => 'gma', 'Glyma.12G193000' => 'gma', 'Glyma.13G309300' => 'gma', 'Glyma.13G319000' => 'gma', 'Glyma.17G012600' => 'gma', 'Gohir.A06G148600' => 'ghi', 'Gohir.A07G115800' => 'ghi', 'Gohir.A08G003600' => 'ghi', 'Gohir.A09G093300' => 'ghi', 'Gohir.A09G105400' => 'ghi', 'Gohir.A09G105500' => 'ghi', 'Gohir.D06G154600' => 'ghi', 'Gohir.D07G120200' => 'ghi', 'Gohir.D08G013900' => 'ghi', 'Gohir.D09G093100' => 'ghi', 'Gohir.D09G102200' => 'ghi', 'Gohir.D09G102300' => 'ghi', 'Gorai.001G129400' => 'gra', 'Gorai.004G008200' => 'gra', 'Gorai.006G109800' => 'gra', 'Gorai.006G119500' => 'gra', 'Gorai.006G121300' => 'gra', 'Gorai.010G180700' => 'gra', 'GSVIVG01012716001' => 'vvi', 'GSVIVG01025118001' => 'vvi', 'GSVIVG01030439001' => 'vvi', 'GSVIVG01031397001' => 'vvi', 'HanXRQChr01g0004201' => 'han', 'HanXRQChr02g0054941' => 'han', 'HanXRQChr05g0141811' => 'han', 'HanXRQChr07g0197751' => 'han', 'HanXRQChr11g0346691' => 'han', 'HanXRQChr13g0396971' => 'han', 'HanXRQChr14g0432951' => 'han', 'HanXRQChr14g0452001' => 'han', 'HanXRQChr15g0496681' => 'han', 'HanXRQChr17g0557491' => 'han', 'HanXRQChr17g0557501' => 'han', 'Haze_06809' => 'cav', 'Haze_12852' => 'cav', 'Haze_15850' => 'cav', 'Haze_23446' => 'cav', 'Haze_23942' => 'cav', 'Haze_23943' => 'cav', 'Hma1.2p1_0091F.1_g046450' => 'hma', 'Hma1.2p1_0128F.1_g059910' => 'hma', 'Hma1.2p1_0249F.1_g102260' => 'hma', 'Hma1.2p1_0453F.1_g156190' => 'hma', 'Hma1.2p1_0695F.1_g204380' => 'hma', 'Hma1.2p1_0749F.1_g212650' => 'hma', 'Hma1.2p1_2156F.1_g315420' => 'hma', 'Hma1.2p1_2686F.1_g326940' => 'hma', 'HPP92_006428' => 'vpl', 'HPP92_012069' => 'vpl', 'HPP92_014129' => 'vpl', 'HPP92_014133' => 'vpl', 'HPP92_017315' => 'vpl', 'HPP92_026445' => 'vpl', 'HPP92_026446' => 'vpl', 'Hund00774' => 'sun', 'Hund07682' => 'sun', 'Hund21413' => 'sun', 'Hund23462' => 'sun', 'Hund23463' => 'sun', 'Lalb_Chr03g0027911' => 'lal', 'Lalb_Chr13g0304271' => 'lal', 'Lalb_Chr19g0137471' => 'lal', 'Lalb_Chr22g0350651' => 'lal', 'Lalb_Chr24g0395151' => 'lal', 'Lj1A1231T40' => 'lonja', 'Lj1A221T48' => 'lonja', 'Lj1C924T12' => 'lonja', 'Lj2C993G6' => 'lonja', 'Lj3g0005790' => 'lja', 'Lj3g0015432' => 'lja', 'Lj3g0017722' => 'lja', 'Lj3g0018497' => 'lja', 'Lj4g0025071' => 'lja', 'Lsat_1_v5_gn_1_129680' => 'lsa', 'Lsat_1_v5_gn_2_25321' => 'lsa', 'Lsat_1_v5_gn_2_95461' => 'lsa', 'Lsat_1_v5_gn_4_159620' => 'lsa', 'Lsat_1_v5_gn_6_41301' => 'lsa', 'Lsat_1_v5_gn_6_74660' => 'lsa', 'Lsat_1_v5_gn_7_11520' => 'lsa', 'Lsat_1_v5_gn_9_67680' => 'lsa', 'Manes.04G008300' => 'mes', 'Manes.04G008400' => 'mes', 'Manes.04G026500' => 'mes', 'Manes.10G135300' => 'mes', 'Manes.11G157300' => 'mes', 'Manes.12G074000' => 'mes', 'Manes.16G006200' => 'mes', 'Manes.17G026400' => 'mes', 'Mapoly0024s0086' => 'mpo', 'Mapoly0024s0087' => 'mpo', 'Mapoly0071s0057' => 'mpo', 'Mapoly0204s0012' => 'mpo', 'MBI04_g37681_MAGBIO' => 'mbi', 'MBI05_g17779_MAGBIO' => 'mbi', 'MBI12_g31184_MAGBIO' => 'mbi', 'MBI17_g11083_MAGBIO' => 'mbi', 'MBI18_g03883_MAGBIO' => 'mbi', 'MBI18_g28940_MAGBIO' => 'mbi', 'MCO01G690' => 'mco', 'MD03G1109900' => 'mdo', 'MD03G1134800' => 'mdo', 'MD05G1348000' => 'mdo', 'MD10G1322400' => 'mdo', 'MD11G1123300' => 'mdo', 'MD11G1157600' => 'mdo', 'Medtr2g084875' => 'mtr', 'Medtr2g088130' => 'mtr', 'Medtr4g055310' => 'mtr', 'Medtr4g061070' => 'mtr', 'Medtr4g132250' => 'mtr', 'MELO3C004795.2' => 'cme', 'MELO3C004797.2' => 'cme', 'MELO3C007396.2' => 'cme', 'MELO3C019277.2' => 'cme', 'MELO3C021449.2' => 'cme', 'MELO3C025736.2' => 'cme', 'Migut.D02175' => 'egut', 'Migut.H01573' => 'egut', 'Migut.M01327' => 'egut', 'Migut.N02513' => 'egut', 'MSTRG.14638' => 'ama', 'MSTRG.18632' => 'ama', 'MSTRG.7203' => 'ama', 'Nitab4.5_0000533g0140' => 'nta', 'Nitab4.5_0000888g0150' => 'nta', 'Nitab4.5_0001453g0040' => 'nta', 'Nitab4.5_0002827g0090' => 'nta', 'Nitab4.5_0003082g0040' => 'nta', 'Nitab4.5_0007799g0040' => 'nta', 'Nitab4.5_0008983g0010' => 'nta', 'Nitab4.5_0009017g0020' => 'nta', 'Nn1g02132' => 'nnu', 'Nn1g03492' => 'nnu', 'Nn1g03493' => 'nnu', 'Nn1g03494' => 'nnu', 'Nn1g07164' => 'nnu', 'Nn1g07291' => 'nnu', 'Nn2g10655' => 'nnu', 'Nn2g11652' => 'nnu', 'Nn2g14008' => 'nnu', 'Nn3g17476' => 'nnu', 'Nn3g17477' => 'nnu', 'Nn4g22370' => 'nnu', 'Nn4g25255' => 'nnu', 'Nn5g27755' => 'nnu', 'Nn6g34260' => 'nnu', 'Nn6g35041' => 'nnu', 'Oeu005924.1' => 'oeu', 'Oeu008383.1' => 'oeu', 'Oeu014928.1' => 'oeu', 'Oeu019889.1' => 'oeu', 'Oeu022271.1' => 'oeu', 'Oeu025271.1' => 'oeu', 'Oeu036302.1' => 'oeu', 'Oeu044100.1' => 'oeu', 'Os01g0528300' => 'osa', 'Os03g0286200' => 'osa', 'Os04g0406600' => 'osa', 'Os07g0512000' => 'osa', 'Os07g0694600' => 'osa', 'Os08g0411000' => 'osa', 'Os09g0565700' => 'osa', 'Os09g0566050' => 'osa', 'Os10g0523700' => 'osa', 'Peaxi162Scf00002g00514' => 'pax', 'Peaxi162Scf00047g01817' => 'pax', 'Peaxi162Scf00114g00001' => 'pax', 'Peaxi162Scf00147g00613' => 'pax', 'Peaxi162Scf00389g00425' => 'pax', 'PGR042G1139' => 'pgr', 'PGR042G3273' => 'pgr', 'PGR102G2180' => 'pgr', 'PGR119G0234' => 'pgr', 'PGR119G0668' => 'pgr', 'PGSC0003DMG400007122' => 'stu', 'PGSC0003DMG400016478' => 'stu', 'PGSC0003DMG400025374' => 'stu', 'PGSC0003DMG400026536' => 'stu', 'Phvul.003G079600' => 'pvu', 'Phvul.005G115600' => 'pvu', 'Phvul.005G127100' => 'pvu', 'Phvul.006G149500' => 'pvu', 'Phvul.006G149600' => 'pvu', 'Phvul.011G071800' => 'pvu', 'Phvul.011G090400' => 'pvu', 'Potri.004G013400' => 'ptr', 'Potri.004G188100' => 'ptr', 'Potri.008G195500' => 'ptr', 'Potri.009G148800' => 'ptr', 'Potri.011G004700' => 'ptr', 'Pp3c17_22810' => 'ppa', 'Pp3c18_4480' => 'ppa', 'Pp3c19_13030' => 'ppa', 'Pp3c1_33620' => 'ppa', 'Pp3c2_9380' => 'ppa', 'PRCOL_00001023' => 'pco', 'Prupe.3G216300' => 'ppe', 'Prupe.4G019500' => 'ppe', 'Prupe.6G092500' => 'ppe', 'Prupe.6G119200' => 'ppe', 'Psat0s1945g0080' => 'psa', 'Psat0s4167g0040' => 'psa', 'Psat1g185800' => 'psa', 'Psat4g006440' => 'psa', 'Psat4g006480' => 'psa', 'Psat4g168120' => 'psa', 'Psat5g255680' => 'psa', 'Psat5g261760' => 'psa', 'Psat7g222120' => 'psa', 'PSO063G7252' => 'pso', 'PSO170G4778' => 'pso', 'PSO210G2249' => 'pso', 'PSO339G2411' => 'pso', 'PSO339G2457' => 'pso', 'PSO339G2854' => 'pso', 'PSO339G4288' => 'pso', 'PSO339G4615' => 'pso', 'PSO384G2796' => 'pso', 'PSO384G2940' => 'pso', 'PSO384G4227' => 'pso', 'PSO478G1425' => 'pso', 'PSO541G3863' => 'pso', 'PSO675G0507' => 'pso', 'PSO782G0338' => 'pso', 'PSO832G0644' => 'pso', 'QL01p013664' => 'qlo', 'QL01p036598' => 'qlo', 'QL05p072984' => 'qlo', 'QL08p005768' => 'qlo', 'QL08p032743' => 'qlo', 'QL93p0073_0439' => 'qlo', 'QL93p0073_0444' => 'qlo', 'RcHm_v2.0_Chr5g0002851' => 'rch', 'RcHm_v2.0_Chr5g0055201' => 'rch', 'RcHm_v2.0_Chr5g0061191' => 'rch', 'RcHm_v2.0_Chr7g0203231' => 'rch', 'Rhsim01G0208100' => 'rsi', 'Rhsim01G0208200' => 'rsi', 'Rhsim02G0106500' => 'rsi', 'Rhsim03G0107900' => 'rsi', 'Rhsim06G0163400' => 'rsi', 'Rhsim13G0105200' => 'rsi', 'Sabra04G0006300' => 'sbr', 'Sabra04G0127000' => 'sbr', 'Sabra08G0148700' => 'sbr', 'Sabra09G0117400' => 'sbr', 'SalBow1G3326' => 'sbo', 'SalBow3G3228' => 'sbo', 'SalBow6G1634' => 'sbo', 'SalBow6G3603' => 'sbo', 'SalBow6G5266' => 'sbo', 'SalBow7G2265' => 'sbo', 'SalBow8G0850' => 'sbo', 'SalBow8G2592' => 'sbo', 'Sc05g0009240' => 'sci', 'Sc12g0002300' => 'sci', 'Sc21g0000100' => 'sci', 'Sc21g0004720' => 'sci', 'Sed0002949' => 'sed', 'Sed0004114' => 'sed', 'Sed0004306' => 'sed', 'Sed0006172' => 'sed', 'Sed0008413' => 'sed', 'Sed0013809' => 'sed', 'Sed0019556' => 'sed', 'SEGI_03570' => 'sgi', 'SEGI_07859' => 'sgi', 'SEGI_15042' => 'sgi', 'SEGI_16263' => 'sgi', 'SEGI_16552' => 'sgi', 'SEGI_24331' => 'sgi', 'SEGI_27316' => 'sgi', 'SEGI_29521' => 'sgi', 'SEGI_41342' => 'sgi', 'SGA_v2.0_scaffold27G11617' => 'sas', 'SGA_v2.0_scaffold316G48428' => 'sas', 'SGA_v2.0_scaffold49G18261' => 'sas', 'SGA_v2.0_scaffold7G03831' => 'sas', 'SGA_v2.0_scaffold93G28359' => 'sas', 'SHI02210' => 'shi', 'SHI06028' => 'shi', 'SHI06321' => 'shi', 'SMO111G0012' => 'smo', 'SMO228G0080' => 'smo', 'SMO356G0756' => 'smo', 'Solyc02g080620.3' => 'sly', 'Solyc06g074530.1' => 'sly', 'Solyc11g066890.1' => 'sly', 'Solyc11g072520.3' => 'sly', 'Sopen02g025330' => 'spe', 'Sopen06g031000' => 'spe', 'Sopen09g008240' => 'spe', 'Sopen09g025210' => 'spe', 'Sopen11g026600' => 'spe', 'Sopen11g030170' => 'spe', 'Sp1g10420' => 'spa', 'Sp3g06570' => 'spa', 'Sp4g10660' => 'spa', 'Sp5g16460' => 'spa', 'Sp6g22710' => 'spa', 'TAR365G0112' => 'tar', 'TAR369G0717' => 'tar', 'TAR374G0976' => 'tar', 'TAR623G1128' => 'tar', 'TAR626G1937' => 'tar', 'TAR627G0123' => 'tar', 'TAR628G0305' => 'tar', 'TAR636G1176' => 'tar', 'TAR636G2442' => 'tar', 'THA.LOC104800556' => 'tha', 'THA.LOC104809501' => 'tha', 'THA.LOC104815126' => 'tha', 'THA.LOC104815732' => 'tha', 'THA.LOC104823528' => 'tha', 'Thecc.02G365600' => 'tca', 'Thecc.06G222300' => 'tca', 'Thecc.09G261800' => 'tca', 'Thecc.09G291400' => 'tca', 'Thhalv10003028m.g' => 'esa', 'Thhalv10007886m.g' => 'esa', 'Thhalv10016085m.g' => 'esa', 'Thhalv10016681m.g' => 'esa', 'Thhalv10020951m.g' => 'esa', 'TPR.G15598' => 'tpr', 'TPR.G29305' => 'tpr', 'TPR.G32395' => 'tpr', 'TPR.G36998' => 'tpr', 'TPR.G4227' => 'tpr', 'TWI18G1433' => 'twi', 'TWI31G0755' => 'twi', 'TWI38G0912' => 'twi', 'TWI75G1097' => 'twi', 'TWI75G1619' => 'twi', 'TWI79G1336' => 'twi', 'unitig_0.g943' => 'ugi', 'unitig_0.g944' => 'ugi', 'unitig_22.g6646' => 'ugi', 'unitig_37.g12681' => 'ugi', 'unitig_8.g3290' => 'ugi', 'vmacro03278' => 'vma', 'vmacro12197' => 'vma', 'vmacro14478' => 'vma', 'vmacro15787' => 'vma', 'vmacro15789' => 'vma', 'vmacro15790' => 'vma', 'vmacro15806' => 'vma', 'vmacro22907' => 'vma', 'vmacro22908' => 'vma', 'vmacro22909' => 'vma', 'vmacro23108' => 'vma', 'VMungo0540G0540' => 'vmu', 'VMungo0540G2468' => 'vmu', 'VMungo1080G0390' => 'vmu', 'VMungo1080G1165' => 'vmu', 'VMungo1127G0170' => 'vmu', 'VMungo1127G2099' => 'vmu', 'VMungo1215G3013' => 'vmu', 'Zm00001eb013110' => 'zma', 'Zm00001eb084260' => 'zma', 'Zm00001eb096110' => 'zma', 'Zm00001eb217510' => 'zma', 'Zm00001eb322550' => 'zma', 'Zm00001eb390770' => 'zma', 'Zm00001eb397170' => 'zma', 'Zm00001eb404610' => 'zma', 'Zm00001eb421790' => 'zma' ), 'gf_id' => 'HOM05D000911', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000911' ), 'data_identifier' => 'HOM05D000911', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000911', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27780' => 'bna', 'A03p35380' => 'bna', 'A04p21160' => 'bna', 'A05p40570' => 'bna', 'A06p26900' => 'bna', 'A08p33230' => 'bna', 'A09p65960' => 'bna', 'A10p18290' => 'bna', 'Aa31LG1G12990' => 'aar', 'Aa31LG1G2980' => 'aar', 'Aa31LG4G14320' => 'aar', 'Aa31LG7G11800' => 'aar', 'Aa31sc36G50' => 'aar', 'Aa31sc36G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3721' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5459' => 'aag', 'Actinidia03028' => 'ach', 'Actinidia03753' => 'ach', 'Actinidia04187' => 'ach', 'Actinidia05509' => 'ach', 'Actinidia24180' => 'ach', 'Actinidia26906' => 'ach', 'Actinidia37097' => 'ach', 'Actinidia38249' => 'ach', 'Ah.01g003470' => 'amhyb', 'Ah.01g004580' => 'amhyb', 'Ah.01g014850' => 'amhyb', 'Ah.01g016830' => 'amhyb', 'Ah.14g088000' => 'amhyb', 'AL1G22980' => 'aly', 'AL3G18990' => 'aly', 'AL4G22440' => 'aly', 'AL4G33180' => 'aly', 'AL5G22920' => 'aly', 'AL6G33660' => 'aly', 'AL8G20720' => 'aly', 'Aqoxy1G00935' => 'aox', 'Aqoxy1G02094' => 'aox', 'Aqoxy2G01239' => 'aox', 'Aqoxy4G01870' => 'aox', 'Aqoxy7G00450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.36ZVTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71EM27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5D6C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH3WRE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3NCM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RIM768' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YB5YRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z36GDV' => 'arhy', 'AT1G08250' => 'ath', 'AT1G11790' => 'ath', 'AT2G27820' => 'ath', 'AT3G07630' => 'ath', 'AT3G44720' => 'ath', 'AT5G22630' => 'ath', 'ATR0693G304' => 'atr', 'ATR0794G109' => 'atr', 'ATR0820G120' => 'atr', 'ATR1159G064' => 'atr', 'Atru.chr10.2239' => 'acertr', 'Atru.chr3.3371' => 'acertr', 'Atru.chr6.3202' => 'acertr', 'AUR62006499' => 'cqu', 'AUR62012718' => 'cqu', 'AUR62021938' => 'cqu', 'AUR62023932' => 'cqu', 'AUR62025034' => 'cqu', 'AUR62025035' => 'cqu', 'AUR62038307' => 'cqu', 'AUR62043466' => 'cqu', 'BcaB02g10748' => 'bca', 'BcaB03g13231' => 'bca', 'BcaB03g14689' => 'bca', 'BcaB05g22716' => 'bca', 'BcaB06g28172' => 'bca', 'BcaB08g36413' => 'bca', 'BcaC01g02186' => 'bca', 'BcaC01g04272' => 'bca', 'BcaC02g08080' => 'bca', 'BcaC02g08227' => 'bca', 'BcaC03g13901' => 'bca', 'BcaC04g19593' => 'bca', 'BcaC04g20874' => 'bca', 'BcaC05g29557' => 'bca', 'BcaC06g35505' => 'bca', 'BcaC07g41954' => 'bca', 'BcaC07g41955' => 'bca', 'BcaC07g41956' => 'bca', 'BcaC07g42519' => 'bca', 'BcaC07g42520' => 'bca', 'BcaC07g42523' => 'bca', 'BcaC07g42524' => 'bca', 'BcaC07g42525' => 'bca', 'BcaC08g47480' => 'bca', 'BcaC08g47481' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00530' => 'bna', 'BolC2t07178H' => 'bol', 'BolC3t16567H' => 'bol', 'BolC4t27234H' => 'bol', 'BolC5t29728H' => 'bol', 'BolC5t34622H' => 'bol', 'BolC6t40321H' => 'bol', 'BolC7t42028H' => 'bol', 'BolC8t49125H' => 'bol', 'BolC8t52538H' => 'bol', 'BolC8t52539H' => 'bol', 'BolC9t56681H' => 'bol', 'BolC9t58266H' => 'bol', 'BolSC21t60294H' => 'bol', 'BraA02t05670Z' => 'bra', 'BraA03t12716Z' => 'bra', 'BraA04t17685Z' => 'bra', 'BraA05t22788Z' => 'bra', 'BraA06t24032Z' => 'bra', 'BraA06t25625Z' => 'bra', 'BraA07t27930Z' => 'bra', 'BraA08t35242Z' => 'bra', 'BraA09t38609Z' => 'bra', 'BraA10t43905Z' => 'bra', 'C02p11060' => 'bna', 'C03p42990' => 'bna', 'C03p67310' => 'bna', 'C04p56990' => 'bna', 'C04p58660' => 'bna', 'C05p09890' => 'bna', 'C05p59680' => 'bna', 'C06p19830' => 'bna', 'C06p53040' => 'bna', 'C07p15230' => 'bna', 'C08p50070' => 'bna', 'C08p50090' => 'bna', 'C09p38330' => 'bna', 'C09p53940' => 'bna', 'CAN.G1014.1' => 'can', 'CAN.G644.30' => 'can', 'CAN.G84.47' => 'can', 'CAN.G919.8' => 'can', 'CANSAT54G0113' => 'cansat', 'CANSAT54G1286' => 'cansat', 'CANSAT64G1020' => 'cansat', 'CARHR008080' => 'chi', 'CARHR008090' => 'chi', 'CARHR012130' => 'chi', 'CARHR038390' => 'chi', 'CARHR082330' => 'chi', 'CARHR120520' => 'chi', 'CARHR151470' => 'chi', 'CARHR190950' => 'chi', 'Carub.0001s0760' => 'cru', 'Carub.0001s1146' => 'cru', 'Carub.0003s0721' => 'cru', 'Carub.0004s0858' => 'cru', 'Carub.0005s1040' => 'cru', 'Carub.0006s2035' => 'cru', 'Carub.0015s0005' => 'cru', 'Ca_01607_v3' => 'car', 'Ca_01677_v3' => 'car', 'Ca_06087_v3' => 'car', 'Ca_19238_v3' => 'car', 'Ca_19373_v3' => 'car', 'Ca_21079_v3' => 'car', 'CBR_g54016' => 'cbr', 'CBR_g54018' => 'cbr', 'CBR_g54020' => 'cbr', 'Cc01_g09780' => 'ccan', 'Cc01_g11680' => 'ccan', 'Cc02_g15610' => 'ccan', 'Cc05_g04350' => 'ccan', 'Cc09_g01580' => 'ccan', 'CDE01G0795' => 'cde', 'CDE02G2024' => 'cde', 'CDE02G2260' => 'cde', 'CDE02G4561' => 'cde', 'CDE05G2733' => 'cde', 'CDE05G3422' => 'cde', 'CDE06G2003' => 'cde', 'CDE08G0576' => 'cde', 'CDE09G0048' => 'cde', 'CDE11G0805' => 'cde', 'Cfa003644' => 'cfa', 'Cfa006290' => 'cfa', 'Cfa010080' => 'cfa', 'Cfa011376' => 'cfa', 'Cfa011576' => 'cfa', 'Cfa011577' => 'cfa', 'Cfa014389' => 'cfa', 'Ciclev10006044m.g' => 'ccl', 'Ciclev10006954m.g' => 'ccl', 'Ciclev10015131m.g' => 'ccl', 'Ciclev10015580m.g' => 'ccl', 'Ciclev10028359m.g' => 'ccl', 'Ciclev10028573m.g' => 'ccl', 'CiPaw.03G159300' => 'cil', 'CiPaw.04G115100' => 'cil', 'CiPaw.09G092800' => 'cil', 'CiPaw.10G071800' => 'cil', 'CiPaw.13G105800' => 'cil', 'CiPaw.13G141000' => 'cil', 'CiPaw.14G103400' => 'cil', 'ClCG01G012700' => 'cla', 'ClCG01G012720' => 'cla', 'ClCG01G021920' => 'cla', 'ClCG02G008870' => 'cla', 'ClCG02G020840' => 'cla', 'ClCG02G021930' => 'cla', 'COL.COLO4_19302' => 'col', 'COL.COLO4_25262' => 'col', 'COL.COLO4_31788' => 'col', 'Cpa.g.c34684' => 'cpa', 'Cpa.g.c36520.1' => 'cpa', 'Cpa.g.c45626' => 'cpa', 'Cpa.g.sc121.17' => 'cpa', 'Cpa.g.sc13.22' => 'cpa', 'Cpa.g.sc87.88' => 'cpa', 'Cre06.g261800' => 'cre', 'CsaV3_1G014500' => 'csa', 'CsaV3_1G014510' => 'csa', 'CsaV3_2G034880' => 'csa', 'CsaV3_6G014760' => 'csa', 'CsaV3_6G021500' => 'csa', 'CsaV3_6G048980' => 'csa', 'CSS0002511' => 'camsi', 'CSS0007556' => 'camsi', 'CSS0008532' => 'camsi', 'CSS0009709' => 'camsi', 'CSS0010486' => 'camsi', 'CSS0016768' => 'camsi', 'CSS0023512' => 'camsi', 'CSS0025341' => 'camsi', 'CSS0027999' => 'camsi', 'CSS0028944' => 'camsi', 'CSS0032292' => 'camsi', 'CSS0032464' => 'camsi', 'CSS0037153' => 'camsi', 'CSS0039256' => 'camsi', 'CSS0048392' => 'camsi', 'CSS0050458' => 'camsi', 'DCAR_004224' => 'dca', 'DCAR_006147' => 'dca', 'DCAR_006465' => 'dca', 'DCAR_008159' => 'dca', 'DCAR_012164' => 'dca', 'DCAR_019764' => 'dca', 'Dinv05418' => 'din', 'Dinv10839' => 'din', 'Dinv12521' => 'din', 'Dinv13900' => 'din', 'Dinv29426' => 'din', 'Duzib150G0263' => 'dzi', 'Duzib168G1178' => 'dzi', 'Duzib168G1924' => 'dzi', 'Duzib170G0299' => 'dzi', 'Duzib170G0813' => 'dzi', 'Duzib235G1128' => 'dzi', 'Duzib248G1060' => 'dzi', 'ECA232G1910' => 'eca', 'ECA233G4621' => 'eca', 'ECA238G1216' => 'eca', 'ECA238G1784' => 'eca', 'ECA248G1242' => 'eca', 'EL10Ac8g20071' => 'bvu', 'EL10Ac9g21086' => 'bvu', 'EL10Ac9g22407' => 'bvu', 'EL10Ac9g22412' => 'bvu', 'Eucgr.A01119' => 'egr', 'Eucgr.E04043' => 'egr', 'Eucgr.J00428' => 'egr', 'Eucgr.J00958' => 'egr', 'FAN11G3091' => 'fan', 'FAN11G3651' => 'fan', 'FAN16G2566' => 'fan', 'FAN21G3155' => 'fan', 'FAN21G3400' => 'fan', 'FAN21G3543' => 'fan', 'FAN25G0234' => 'fan', 'FAN25G1422' => 'fan', 'FAN25G3392' => 'fan', 'FvH4_3g01940' => 'fve', 'FvH4_3g29870' => 'fve', 'FvH4_3g33680' => 'fve', 'Glyma.09G004200' => 'gma', 'Glyma.11G151288' => 'gma', 'Glyma.11G189100' => 'gma', 'Glyma.12G072500' => 'gma', 'Glyma.12G085500' => 'gma', 'Glyma.12G181800' => 'gma', 'Glyma.12G193000' => 'gma', 'Glyma.13G309300' => 'gma', 'Glyma.13G319000' => 'gma', 'Glyma.17G012600' => 'gma', 'Gohir.A06G148600' => 'ghi', 'Gohir.A07G115800' => 'ghi', 'Gohir.A08G003600' => 'ghi', 'Gohir.A09G093300' => 'ghi', 'Gohir.A09G105400' => 'ghi', 'Gohir.A09G105500' => 'ghi', 'Gohir.D06G154600' => 'ghi', 'Gohir.D07G120200' => 'ghi', 'Gohir.D08G013900' => 'ghi', 'Gohir.D09G093100' => 'ghi', 'Gohir.D09G102200' => 'ghi', 'Gohir.D09G102300' => 'ghi', 'Gorai.001G129400' => 'gra', 'Gorai.004G008200' => 'gra', 'Gorai.006G109800' => 'gra', 'Gorai.006G119500' => 'gra', 'Gorai.006G121300' => 'gra', 'Gorai.010G180700' => 'gra', 'GSVIVG01012716001' => 'vvi', 'GSVIVG01025118001' => 'vvi', 'GSVIVG01030439001' => 'vvi', 'GSVIVG01031397001' => 'vvi', 'HanXRQChr01g0004201' => 'han', 'HanXRQChr02g0054941' => 'han', 'HanXRQChr05g0141811' => 'han', 'HanXRQChr07g0197751' => 'han', 'HanXRQChr11g0346691' => 'han', 'HanXRQChr13g0396971' => 'han', 'HanXRQChr14g0432951' => 'han', 'HanXRQChr14g0452001' => 'han', 'HanXRQChr15g0496681' => 'han', 'HanXRQChr17g0557491' => 'han', 'HanXRQChr17g0557501' => 'han', 'Haze_06809' => 'cav', 'Haze_12852' => 'cav', 'Haze_15850' => 'cav', 'Haze_23446' => 'cav', 'Haze_23942' => 'cav', 'Haze_23943' => 'cav', 'Hma1.2p1_0091F.1_g046450' => 'hma', 'Hma1.2p1_0128F.1_g059910' => 'hma', 'Hma1.2p1_0249F.1_g102260' => 'hma', 'Hma1.2p1_0453F.1_g156190' => 'hma', 'Hma1.2p1_0695F.1_g204380' => 'hma', 'Hma1.2p1_0749F.1_g212650' => 'hma', 'Hma1.2p1_2156F.1_g315420' => 'hma', 'Hma1.2p1_2686F.1_g326940' => 'hma', 'HPP92_006428' => 'vpl', 'HPP92_012069' => 'vpl', 'HPP92_014129' => 'vpl', 'HPP92_014133' => 'vpl', 'HPP92_017315' => 'vpl', 'HPP92_026445' => 'vpl', 'HPP92_026446' => 'vpl', 'Hund00774' => 'sun', 'Hund07682' => 'sun', 'Hund21413' => 'sun', 'Hund23462' => 'sun', 'Hund23463' => 'sun', 'Lalb_Chr03g0027911' => 'lal', 'Lalb_Chr13g0304271' => 'lal', 'Lalb_Chr19g0137471' => 'lal', 'Lalb_Chr22g0350651' => 'lal', 'Lalb_Chr24g0395151' => 'lal', 'Lj1A1231T40' => 'lonja', 'Lj1A221T48' => 'lonja', 'Lj1C924T12' => 'lonja', 'Lj2C993G6' => 'lonja', 'Lj3g0005790' => 'lja', 'Lj3g0015432' => 'lja', 'Lj3g0017722' => 'lja', 'Lj3g0018497' => 'lja', 'Lj4g0025071' => 'lja', 'Lsat_1_v5_gn_1_129680' => 'lsa', 'Lsat_1_v5_gn_2_25321' => 'lsa', 'Lsat_1_v5_gn_2_95461' => 'lsa', 'Lsat_1_v5_gn_4_159620' => 'lsa', 'Lsat_1_v5_gn_6_41301' => 'lsa', 'Lsat_1_v5_gn_6_74660' => 'lsa', 'Lsat_1_v5_gn_7_11520' => 'lsa', 'Lsat_1_v5_gn_9_67680' => 'lsa', 'Manes.04G008300' => 'mes', 'Manes.04G008400' => 'mes', 'Manes.04G026500' => 'mes', 'Manes.10G135300' => 'mes', 'Manes.11G157300' => 'mes', 'Manes.12G074000' => 'mes', 'Manes.16G006200' => 'mes', 'Manes.17G026400' => 'mes', 'Mapoly0024s0086' => 'mpo', 'Mapoly0024s0087' => 'mpo', 'Mapoly0071s0057' => 'mpo', 'Mapoly0204s0012' => 'mpo', 'MBI04_g37681_MAGBIO' => 'mbi', 'MBI05_g17779_MAGBIO' => 'mbi', 'MBI12_g31184_MAGBIO' => 'mbi', 'MBI17_g11083_MAGBIO' => 'mbi', 'MBI18_g03883_MAGBIO' => 'mbi', 'MBI18_g28940_MAGBIO' => 'mbi', 'MCO01G690' => 'mco', 'MD03G1109900' => 'mdo', 'MD03G1134800' => 'mdo', 'MD05G1348000' => 'mdo', 'MD10G1322400' => 'mdo', 'MD11G1123300' => 'mdo', 'MD11G1157600' => 'mdo', 'Medtr2g084875' => 'mtr', 'Medtr2g088130' => 'mtr', 'Medtr4g055310' => 'mtr', 'Medtr4g061070' => 'mtr', 'Medtr4g132250' => 'mtr', 'MELO3C004795.2' => 'cme', 'MELO3C004797.2' => 'cme', 'MELO3C007396.2' => 'cme', 'MELO3C019277.2' => 'cme', 'MELO3C021449.2' => 'cme', 'MELO3C025736.2' => 'cme', 'Migut.D02175' => 'egut', 'Migut.H01573' => 'egut', 'Migut.M01327' => 'egut', 'Migut.N02513' => 'egut', 'MSTRG.14638' => 'ama', 'MSTRG.18632' => 'ama', 'MSTRG.7203' => 'ama', 'Nitab4.5_0000533g0140' => 'nta', 'Nitab4.5_0000888g0150' => 'nta', 'Nitab4.5_0001453g0040' => 'nta', 'Nitab4.5_0002827g0090' => 'nta', 'Nitab4.5_0003082g0040' => 'nta', 'Nitab4.5_0007799g0040' => 'nta', 'Nitab4.5_0008983g0010' => 'nta', 'Nitab4.5_0009017g0020' => 'nta', 'Nn1g02132' => 'nnu', 'Nn1g03492' => 'nnu', 'Nn1g03493' => 'nnu', 'Nn1g03494' => 'nnu', 'Nn1g07164' => 'nnu', 'Nn1g07291' => 'nnu', 'Nn2g10655' => 'nnu', 'Nn2g11652' => 'nnu', 'Nn2g14008' => 'nnu', 'Nn3g17476' => 'nnu', 'Nn3g17477' => 'nnu', 'Nn4g22370' => 'nnu', 'Nn4g25255' => 'nnu', 'Nn5g27755' => 'nnu', 'Nn6g34260' => 'nnu', 'Nn6g35041' => 'nnu', 'Oeu005924.1' => 'oeu', 'Oeu008383.1' => 'oeu', 'Oeu014928.1' => 'oeu', 'Oeu019889.1' => 'oeu', 'Oeu022271.1' => 'oeu', 'Oeu025271.1' => 'oeu', 'Oeu036302.1' => 'oeu', 'Oeu044100.1' => 'oeu', 'Os01g0528300' => 'osa', 'Os03g0286200' => 'osa', 'Os04g0406600' => 'osa', 'Os07g0512000' => 'osa', 'Os07g0694600' => 'osa', 'Os08g0411000' => 'osa', 'Os09g0565700' => 'osa', 'Os09g0566050' => 'osa', 'Os10g0523700' => 'osa', 'Peaxi162Scf00002g00514' => 'pax', 'Peaxi162Scf00047g01817' => 'pax', 'Peaxi162Scf00114g00001' => 'pax', 'Peaxi162Scf00147g00613' => 'pax', 'Peaxi162Scf00389g00425' => 'pax', 'PGR042G1139' => 'pgr', 'PGR042G3273' => 'pgr', 'PGR102G2180' => 'pgr', 'PGR119G0234' => 'pgr', 'PGR119G0668' => 'pgr', 'PGSC0003DMG400007122' => 'stu', 'PGSC0003DMG400016478' => 'stu', 'PGSC0003DMG400025374' => 'stu', 'PGSC0003DMG400026536' => 'stu', 'Phvul.003G079600' => 'pvu', 'Phvul.005G115600' => 'pvu', 'Phvul.005G127100' => 'pvu', 'Phvul.006G149500' => 'pvu', 'Phvul.006G149600' => 'pvu', 'Phvul.011G071800' => 'pvu', 'Phvul.011G090400' => 'pvu', 'Potri.004G013400' => 'ptr', 'Potri.004G188100' => 'ptr', 'Potri.008G195500' => 'ptr', 'Potri.009G148800' => 'ptr', 'Potri.011G004700' => 'ptr', 'Pp3c17_22810' => 'ppa', 'Pp3c18_4480' => 'ppa', 'Pp3c19_13030' => 'ppa', 'Pp3c1_33620' => 'ppa', 'Pp3c2_9380' => 'ppa', 'PRCOL_00001023' => 'pco', 'Prupe.3G216300' => 'ppe', 'Prupe.4G019500' => 'ppe', 'Prupe.6G092500' => 'ppe', 'Prupe.6G119200' => 'ppe', 'Psat0s1945g0080' => 'psa', 'Psat0s4167g0040' => 'psa', 'Psat1g185800' => 'psa', 'Psat4g006440' => 'psa', 'Psat4g006480' => 'psa', 'Psat4g168120' => 'psa', 'Psat5g255680' => 'psa', 'Psat5g261760' => 'psa', 'Psat7g222120' => 'psa', 'PSO063G7252' => 'pso', 'PSO170G4778' => 'pso', 'PSO210G2249' => 'pso', 'PSO339G2411' => 'pso', 'PSO339G2457' => 'pso', 'PSO339G2854' => 'pso', 'PSO339G4288' => 'pso', 'PSO339G4615' => 'pso', 'PSO384G2796' => 'pso', 'PSO384G2940' => 'pso', 'PSO384G4227' => 'pso', 'PSO478G1425' => 'pso', 'PSO541G3863' => 'pso', 'PSO675G0507' => 'pso', 'PSO782G0338' => 'pso', 'PSO832G0644' => 'pso', 'QL01p013664' => 'qlo', 'QL01p036598' => 'qlo', 'QL05p072984' => 'qlo', 'QL08p005768' => 'qlo', 'QL08p032743' => 'qlo', 'QL93p0073_0439' => 'qlo', 'QL93p0073_0444' => 'qlo', 'RcHm_v2.0_Chr5g0002851' => 'rch', 'RcHm_v2.0_Chr5g0055201' => 'rch', 'RcHm_v2.0_Chr5g0061191' => 'rch', 'RcHm_v2.0_Chr7g0203231' => 'rch', 'Rhsim01G0208100' => 'rsi', 'Rhsim01G0208200' => 'rsi', 'Rhsim02G0106500' => 'rsi', 'Rhsim03G0107900' => 'rsi', 'Rhsim06G0163400' => 'rsi', 'Rhsim13G0105200' => 'rsi', 'Sabra04G0006300' => 'sbr', 'Sabra04G0127000' => 'sbr', 'Sabra08G0148700' => 'sbr', 'Sabra09G0117400' => 'sbr', 'SalBow1G3326' => 'sbo', 'SalBow3G3228' => 'sbo', 'SalBow6G1634' => 'sbo', 'SalBow6G3603' => 'sbo', 'SalBow6G5266' => 'sbo', 'SalBow7G2265' => 'sbo', 'SalBow8G0850' => 'sbo', 'SalBow8G2592' => 'sbo', 'Sc05g0009240' => 'sci', 'Sc12g0002300' => 'sci', 'Sc21g0000100' => 'sci', 'Sc21g0004720' => 'sci', 'Sed0002949' => 'sed', 'Sed0004114' => 'sed', 'Sed0004306' => 'sed', 'Sed0006172' => 'sed', 'Sed0008413' => 'sed', 'Sed0013809' => 'sed', 'Sed0019556' => 'sed', 'SEGI_03570' => 'sgi', 'SEGI_07859' => 'sgi', 'SEGI_15042' => 'sgi', 'SEGI_16263' => 'sgi', 'SEGI_16552' => 'sgi', 'SEGI_24331' => 'sgi', 'SEGI_27316' => 'sgi', 'SEGI_29521' => 'sgi', 'SEGI_41342' => 'sgi', 'SGA_v2.0_scaffold27G11617' => 'sas', 'SGA_v2.0_scaffold316G48428' => 'sas', 'SGA_v2.0_scaffold49G18261' => 'sas', 'SGA_v2.0_scaffold7G03831' => 'sas', 'SGA_v2.0_scaffold93G28359' => 'sas', 'SHI02210' => 'shi', 'SHI06028' => 'shi', 'SHI06321' => 'shi', 'SMO111G0012' => 'smo', 'SMO228G0080' => 'smo', 'SMO356G0756' => 'smo', 'Solyc02g080620.3' => 'sly', 'Solyc06g074530.1' => 'sly', 'Solyc11g066890.1' => 'sly', 'Solyc11g072520.3' => 'sly', 'Sopen02g025330' => 'spe', 'Sopen06g031000' => 'spe', 'Sopen09g008240' => 'spe', 'Sopen09g025210' => 'spe', 'Sopen11g026600' => 'spe', 'Sopen11g030170' => 'spe', 'Sp1g10420' => 'spa', 'Sp3g06570' => 'spa', 'Sp4g10660' => 'spa', 'Sp5g16460' => 'spa', 'Sp6g22710' => 'spa', 'TAR365G0112' => 'tar', 'TAR369G0717' => 'tar', 'TAR374G0976' => 'tar', 'TAR623G1128' => 'tar', 'TAR626G1937' => 'tar', 'TAR627G0123' => 'tar', 'TAR628G0305' => 'tar', 'TAR636G1176' => 'tar', 'TAR636G2442' => 'tar', 'THA.LOC104800556' => 'tha', 'THA.LOC104809501' => 'tha', 'THA.LOC104815126' => 'tha', 'THA.LOC104815732' => 'tha', 'THA.LOC104823528' => 'tha', 'Thecc.02G365600' => 'tca', 'Thecc.06G222300' => 'tca', 'Thecc.09G261800' => 'tca', 'Thecc.09G291400' => 'tca', 'Thhalv10003028m.g' => 'esa', 'Thhalv10007886m.g' => 'esa', 'Thhalv10016085m.g' => 'esa', 'Thhalv10016681m.g' => 'esa', 'Thhalv10020951m.g' => 'esa', 'TPR.G15598' => 'tpr', 'TPR.G29305' => 'tpr', 'TPR.G32395' => 'tpr', 'TPR.G36998' => 'tpr', 'TPR.G4227' => 'tpr', 'TWI18G1433' => 'twi', 'TWI31G0755' => 'twi', 'TWI38G0912' => 'twi', 'TWI75G1097' => 'twi', 'TWI75G1619' => 'twi', 'TWI79G1336' => 'twi', 'unitig_0.g943' => 'ugi', 'unitig_0.g944' => 'ugi', 'unitig_22.g6646' => 'ugi', 'unitig_37.g12681' => 'ugi', 'unitig_8.g3290' => 'ugi', 'vmacro03278' => 'vma', 'vmacro12197' => 'vma', 'vmacro14478' => 'vma', 'vmacro15787' => 'vma', 'vmacro15789' => 'vma', 'vmacro15790' => 'vma', 'vmacro15806' => 'vma', 'vmacro22907' => 'vma', 'vmacro22908' => 'vma', 'vmacro22909' => 'vma', 'vmacro23108' => 'vma', 'VMungo0540G0540' => 'vmu', 'VMungo0540G2468' => 'vmu', 'VMungo1080G0390' => 'vmu', 'VMungo1080G1165' => 'vmu', 'VMungo1127G0170' => 'vmu', 'VMungo1127G2099' => 'vmu', 'VMungo1215G3013' => 'vmu', 'Zm00001eb013110' => 'zma', 'Zm00001eb084260' => 'zma', 'Zm00001eb096110' => 'zma', 'Zm00001eb217510' => 'zma', 'Zm00001eb322550' => 'zma', 'Zm00001eb390770' => 'zma', 'Zm00001eb397170' => 'zma', 'Zm00001eb404610' => 'zma', 'Zm00001eb421790' => 'zma' ) $gf_id = 'HOM05D000911' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000911' ) $data_identifier = 'HOM05D000911' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 16, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 5, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 6, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 8, 'nnu' => (int) 16, 'oeu' => (int) 8, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 5, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 16, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421790' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000911', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27780' => 'bna', 'A03p35380' => 'bna', 'A04p21160' => 'bna', 'A05p40570' => 'bna', 'A06p26900' => 'bna', 'A08p33230' => 'bna', 'A09p65960' => 'bna', 'A10p18290' => 'bna', 'Aa31LG1G12990' => 'aar', 'Aa31LG1G2980' => 'aar', 'Aa31LG4G14320' => 'aar', 'Aa31LG7G11800' => 'aar', 'Aa31sc36G50' => 'aar', 'Aa31sc36G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3721' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5459' => 'aag', 'Actinidia03028' => 'ach', 'Actinidia03753' => 'ach', 'Actinidia04187' => 'ach', 'Actinidia05509' => 'ach', 'Actinidia24180' => 'ach', 'Actinidia26906' => 'ach', 'Actinidia37097' => 'ach', 'Actinidia38249' => 'ach', 'Ah.01g003470' => 'amhyb', 'Ah.01g004580' => 'amhyb', 'Ah.01g014850' => 'amhyb', 'Ah.01g016830' => 'amhyb', 'Ah.14g088000' => 'amhyb', 'AL1G22980' => 'aly', 'AL3G18990' => 'aly', 'AL4G22440' => 'aly', 'AL4G33180' => 'aly', 'AL5G22920' => 'aly', 'AL6G33660' => 'aly', 'AL8G20720' => 'aly', 'Aqoxy1G00935' => 'aox', 'Aqoxy1G02094' => 'aox', 'Aqoxy2G01239' => 'aox', 'Aqoxy4G01870' => 'aox', 'Aqoxy7G00450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.36ZVTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71EM27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5D6C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH3WRE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3NCM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RIM768' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YB5YRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z36GDV' => 'arhy', 'AT1G08250' => 'ath', 'AT1G11790' => 'ath', 'AT2G27820' => 'ath', 'AT3G07630' => 'ath', 'AT3G44720' => 'ath', 'AT5G22630' => 'ath', 'ATR0693G304' => 'atr', 'ATR0794G109' => 'atr', 'ATR0820G120' => 'atr', 'ATR1159G064' => 'atr', 'Atru.chr10.2239' => 'acertr', 'Atru.chr3.3371' => 'acertr', 'Atru.chr6.3202' => 'acertr', 'AUR62006499' => 'cqu', 'AUR62012718' => 'cqu', 'AUR62021938' => 'cqu', 'AUR62023932' => 'cqu', 'AUR62025034' => 'cqu', 'AUR62025035' => 'cqu', 'AUR62038307' => 'cqu', 'AUR62043466' => 'cqu', 'BcaB02g10748' => 'bca', 'BcaB03g13231' => 'bca', 'BcaB03g14689' => 'bca', 'BcaB05g22716' => 'bca', 'BcaB06g28172' => 'bca', 'BcaB08g36413' => 'bca', 'BcaC01g02186' => 'bca', 'BcaC01g04272' => 'bca', 'BcaC02g08080' => 'bca', 'BcaC02g08227' => 'bca', 'BcaC03g13901' => 'bca', 'BcaC04g19593' => 'bca', 'BcaC04g20874' => 'bca', 'BcaC05g29557' => 'bca', 'BcaC06g35505' => 'bca', 'BcaC07g41954' => 'bca', 'BcaC07g41955' => 'bca', 'BcaC07g41956' => 'bca', 'BcaC07g42519' => 'bca', 'BcaC07g42520' => 'bca', 'BcaC07g42523' => 'bca', 'BcaC07g42524' => 'bca', 'BcaC07g42525' => 'bca', 'BcaC08g47480' => 'bca', 'BcaC08g47481' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00530' => 'bna', 'BolC2t07178H' => 'bol', 'BolC3t16567H' => 'bol', 'BolC4t27234H' => 'bol', 'BolC5t29728H' => 'bol', 'BolC5t34622H' => 'bol', 'BolC6t40321H' => 'bol', 'BolC7t42028H' => 'bol', 'BolC8t49125H' => 'bol', 'BolC8t52538H' => 'bol', 'BolC8t52539H' => 'bol', 'BolC9t56681H' => 'bol', 'BolC9t58266H' => 'bol', 'BolSC21t60294H' => 'bol', 'BraA02t05670Z' => 'bra', 'BraA03t12716Z' => 'bra', 'BraA04t17685Z' => 'bra', 'BraA05t22788Z' => 'bra', 'BraA06t24032Z' => 'bra', 'BraA06t25625Z' => 'bra', 'BraA07t27930Z' => 'bra', 'BraA08t35242Z' => 'bra', 'BraA09t38609Z' => 'bra', 'BraA10t43905Z' => 'bra', 'C02p11060' => 'bna', 'C03p42990' => 'bna', 'C03p67310' => 'bna', 'C04p56990' => 'bna', 'C04p58660' => 'bna', 'C05p09890' => 'bna', 'C05p59680' => 'bna', 'C06p19830' => 'bna', 'C06p53040' => 'bna', 'C07p15230' => 'bna', 'C08p50070' => 'bna', 'C08p50090' => 'bna', 'C09p38330' => 'bna', 'C09p53940' => 'bna', 'CAN.G1014.1' => 'can', 'CAN.G644.30' => 'can', 'CAN.G84.47' => 'can', 'CAN.G919.8' => 'can', 'CANSAT54G0113' => 'cansat', 'CANSAT54G1286' => 'cansat', 'CANSAT64G1020' => 'cansat', 'CARHR008080' => 'chi', 'CARHR008090' => 'chi', 'CARHR012130' => 'chi', 'CARHR038390' => 'chi', 'CARHR082330' => 'chi', 'CARHR120520' => 'chi', 'CARHR151470' => 'chi', 'CARHR190950' => 'chi', 'Carub.0001s0760' => 'cru', 'Carub.0001s1146' => 'cru', 'Carub.0003s0721' => 'cru', 'Carub.0004s0858' => 'cru', 'Carub.0005s1040' => 'cru', 'Carub.0006s2035' => 'cru', 'Carub.0015s0005' => 'cru', 'Ca_01607_v3' => 'car', 'Ca_01677_v3' => 'car', 'Ca_06087_v3' => 'car', 'Ca_19238_v3' => 'car', 'Ca_19373_v3' => 'car', 'Ca_21079_v3' => 'car', 'CBR_g54016' => 'cbr', 'CBR_g54018' => 'cbr', 'CBR_g54020' => 'cbr', 'Cc01_g09780' => 'ccan', 'Cc01_g11680' => 'ccan', 'Cc02_g15610' => 'ccan', 'Cc05_g04350' => 'ccan', 'Cc09_g01580' => 'ccan', 'CDE01G0795' => 'cde', 'CDE02G2024' => 'cde', 'CDE02G2260' => 'cde', 'CDE02G4561' => 'cde', 'CDE05G2733' => 'cde', 'CDE05G3422' => 'cde', 'CDE06G2003' => 'cde', 'CDE08G0576' => 'cde', 'CDE09G0048' => 'cde', 'CDE11G0805' => 'cde', 'Cfa003644' => 'cfa', 'Cfa006290' => 'cfa', 'Cfa010080' => 'cfa', 'Cfa011376' => 'cfa', 'Cfa011576' => 'cfa', 'Cfa011577' => 'cfa', 'Cfa014389' => 'cfa', 'Ciclev10006044m.g' => 'ccl', 'Ciclev10006954m.g' => 'ccl', 'Ciclev10015131m.g' => 'ccl', 'Ciclev10015580m.g' => 'ccl', 'Ciclev10028359m.g' => 'ccl', 'Ciclev10028573m.g' => 'ccl', 'CiPaw.03G159300' => 'cil', 'CiPaw.04G115100' => 'cil', 'CiPaw.09G092800' => 'cil', 'CiPaw.10G071800' => 'cil', 'CiPaw.13G105800' => 'cil', 'CiPaw.13G141000' => 'cil', 'CiPaw.14G103400' => 'cil', 'ClCG01G012700' => 'cla', 'ClCG01G012720' => 'cla', 'ClCG01G021920' => 'cla', 'ClCG02G008870' => 'cla', 'ClCG02G020840' => 'cla', 'ClCG02G021930' => 'cla', 'COL.COLO4_19302' => 'col', 'COL.COLO4_25262' => 'col', 'COL.COLO4_31788' => 'col', 'Cpa.g.c34684' => 'cpa', 'Cpa.g.c36520.1' => 'cpa', 'Cpa.g.c45626' => 'cpa', 'Cpa.g.sc121.17' => 'cpa', 'Cpa.g.sc13.22' => 'cpa', 'Cpa.g.sc87.88' => 'cpa', 'Cre06.g261800' => 'cre', 'CsaV3_1G014500' => 'csa', 'CsaV3_1G014510' => 'csa', 'CsaV3_2G034880' => 'csa', 'CsaV3_6G014760' => 'csa', 'CsaV3_6G021500' => 'csa', 'CsaV3_6G048980' => 'csa', 'CSS0002511' => 'camsi', 'CSS0007556' => 'camsi', 'CSS0008532' => 'camsi', 'CSS0009709' => 'camsi', 'CSS0010486' => 'camsi', 'CSS0016768' => 'camsi', 'CSS0023512' => 'camsi', 'CSS0025341' => 'camsi', 'CSS0027999' => 'camsi', 'CSS0028944' => 'camsi', 'CSS0032292' => 'camsi', 'CSS0032464' => 'camsi', 'CSS0037153' => 'camsi', 'CSS0039256' => 'camsi', 'CSS0048392' => 'camsi', 'CSS0050458' => 'camsi', 'DCAR_004224' => 'dca', 'DCAR_006147' => 'dca', 'DCAR_006465' => 'dca', 'DCAR_008159' => 'dca', 'DCAR_012164' => 'dca', 'DCAR_019764' => 'dca', 'Dinv05418' => 'din', 'Dinv10839' => 'din', 'Dinv12521' => 'din', 'Dinv13900' => 'din', 'Dinv29426' => 'din', 'Duzib150G0263' => 'dzi', 'Duzib168G1178' => 'dzi', 'Duzib168G1924' => 'dzi', 'Duzib170G0299' => 'dzi', 'Duzib170G0813' => 'dzi', 'Duzib235G1128' => 'dzi', 'Duzib248G1060' => 'dzi', 'ECA232G1910' => 'eca', 'ECA233G4621' => 'eca', 'ECA238G1216' => 'eca', 'ECA238G1784' => 'eca', 'ECA248G1242' => 'eca', 'EL10Ac8g20071' => 'bvu', 'EL10Ac9g21086' => 'bvu', 'EL10Ac9g22407' => 'bvu', 'EL10Ac9g22412' => 'bvu', 'Eucgr.A01119' => 'egr', 'Eucgr.E04043' => 'egr', 'Eucgr.J00428' => 'egr', 'Eucgr.J00958' => 'egr', 'FAN11G3091' => 'fan', 'FAN11G3651' => 'fan', 'FAN16G2566' => 'fan', 'FAN21G3155' => 'fan', 'FAN21G3400' => 'fan', 'FAN21G3543' => 'fan', 'FAN25G0234' => 'fan', 'FAN25G1422' => 'fan', 'FAN25G3392' => 'fan', 'FvH4_3g01940' => 'fve', 'FvH4_3g29870' => 'fve', 'FvH4_3g33680' => 'fve', 'Glyma.09G004200' => 'gma', 'Glyma.11G151288' => 'gma', 'Glyma.11G189100' => 'gma', 'Glyma.12G072500' => 'gma', 'Glyma.12G085500' => 'gma', 'Glyma.12G181800' => 'gma', 'Glyma.12G193000' => 'gma', 'Glyma.13G309300' => 'gma', 'Glyma.13G319000' => 'gma', 'Glyma.17G012600' => 'gma', 'Gohir.A06G148600' => 'ghi', 'Gohir.A07G115800' => 'ghi', 'Gohir.A08G003600' => 'ghi', 'Gohir.A09G093300' => 'ghi', 'Gohir.A09G105400' => 'ghi', 'Gohir.A09G105500' => 'ghi', 'Gohir.D06G154600' => 'ghi', 'Gohir.D07G120200' => 'ghi', 'Gohir.D08G013900' => 'ghi', 'Gohir.D09G093100' => 'ghi', 'Gohir.D09G102200' => 'ghi', 'Gohir.D09G102300' => 'ghi', 'Gorai.001G129400' => 'gra', 'Gorai.004G008200' => 'gra', 'Gorai.006G109800' => 'gra', 'Gorai.006G119500' => 'gra', 'Gorai.006G121300' => 'gra', 'Gorai.010G180700' => 'gra', 'GSVIVG01012716001' => 'vvi', 'GSVIVG01025118001' => 'vvi', 'GSVIVG01030439001' => 'vvi', 'GSVIVG01031397001' => 'vvi', 'HanXRQChr01g0004201' => 'han', 'HanXRQChr02g0054941' => 'han', 'HanXRQChr05g0141811' => 'han', 'HanXRQChr07g0197751' => 'han', 'HanXRQChr11g0346691' => 'han', 'HanXRQChr13g0396971' => 'han', 'HanXRQChr14g0432951' => 'han', 'HanXRQChr14g0452001' => 'han', 'HanXRQChr15g0496681' => 'han', 'HanXRQChr17g0557491' => 'han', 'HanXRQChr17g0557501' => 'han', 'Haze_06809' => 'cav', 'Haze_12852' => 'cav', 'Haze_15850' => 'cav', 'Haze_23446' => 'cav', 'Haze_23942' => 'cav', 'Haze_23943' => 'cav', 'Hma1.2p1_0091F.1_g046450' => 'hma', 'Hma1.2p1_0128F.1_g059910' => 'hma', 'Hma1.2p1_0249F.1_g102260' => 'hma', 'Hma1.2p1_0453F.1_g156190' => 'hma', 'Hma1.2p1_0695F.1_g204380' => 'hma', 'Hma1.2p1_0749F.1_g212650' => 'hma', 'Hma1.2p1_2156F.1_g315420' => 'hma', 'Hma1.2p1_2686F.1_g326940' => 'hma', 'HPP92_006428' => 'vpl', 'HPP92_012069' => 'vpl', 'HPP92_014129' => 'vpl', 'HPP92_014133' => 'vpl', 'HPP92_017315' => 'vpl', 'HPP92_026445' => 'vpl', 'HPP92_026446' => 'vpl', 'Hund00774' => 'sun', 'Hund07682' => 'sun', 'Hund21413' => 'sun', 'Hund23462' => 'sun', 'Hund23463' => 'sun', 'Lalb_Chr03g0027911' => 'lal', 'Lalb_Chr13g0304271' => 'lal', 'Lalb_Chr19g0137471' => 'lal', 'Lalb_Chr22g0350651' => 'lal', 'Lalb_Chr24g0395151' => 'lal', 'Lj1A1231T40' => 'lonja', 'Lj1A221T48' => 'lonja', 'Lj1C924T12' => 'lonja', 'Lj2C993G6' => 'lonja', 'Lj3g0005790' => 'lja', 'Lj3g0015432' => 'lja', 'Lj3g0017722' => 'lja', 'Lj3g0018497' => 'lja', 'Lj4g0025071' => 'lja', 'Lsat_1_v5_gn_1_129680' => 'lsa', 'Lsat_1_v5_gn_2_25321' => 'lsa', 'Lsat_1_v5_gn_2_95461' => 'lsa', 'Lsat_1_v5_gn_4_159620' => 'lsa', 'Lsat_1_v5_gn_6_41301' => 'lsa', 'Lsat_1_v5_gn_6_74660' => 'lsa', 'Lsat_1_v5_gn_7_11520' => 'lsa', 'Lsat_1_v5_gn_9_67680' => 'lsa', 'Manes.04G008300' => 'mes', 'Manes.04G008400' => 'mes', 'Manes.04G026500' => 'mes', 'Manes.10G135300' => 'mes', 'Manes.11G157300' => 'mes', 'Manes.12G074000' => 'mes', 'Manes.16G006200' => 'mes', 'Manes.17G026400' => 'mes', 'Mapoly0024s0086' => 'mpo', 'Mapoly0024s0087' => 'mpo', 'Mapoly0071s0057' => 'mpo', 'Mapoly0204s0012' => 'mpo', 'MBI04_g37681_MAGBIO' => 'mbi', 'MBI05_g17779_MAGBIO' => 'mbi', 'MBI12_g31184_MAGBIO' => 'mbi', 'MBI17_g11083_MAGBIO' => 'mbi', 'MBI18_g03883_MAGBIO' => 'mbi', 'MBI18_g28940_MAGBIO' => 'mbi', 'MCO01G690' => 'mco', 'MD03G1109900' => 'mdo', 'MD03G1134800' => 'mdo', 'MD05G1348000' => 'mdo', 'MD10G1322400' => 'mdo', 'MD11G1123300' => 'mdo', 'MD11G1157600' => 'mdo', 'Medtr2g084875' => 'mtr', 'Medtr2g088130' => 'mtr', 'Medtr4g055310' => 'mtr', 'Medtr4g061070' => 'mtr', 'Medtr4g132250' => 'mtr', 'MELO3C004795.2' => 'cme', 'MELO3C004797.2' => 'cme', 'MELO3C007396.2' => 'cme', 'MELO3C019277.2' => 'cme', 'MELO3C021449.2' => 'cme', 'MELO3C025736.2' => 'cme', 'Migut.D02175' => 'egut', 'Migut.H01573' => 'egut', 'Migut.M01327' => 'egut', 'Migut.N02513' => 'egut', 'MSTRG.14638' => 'ama', 'MSTRG.18632' => 'ama', 'MSTRG.7203' => 'ama', 'Nitab4.5_0000533g0140' => 'nta', 'Nitab4.5_0000888g0150' => 'nta', 'Nitab4.5_0001453g0040' => 'nta', 'Nitab4.5_0002827g0090' => 'nta', 'Nitab4.5_0003082g0040' => 'nta', 'Nitab4.5_0007799g0040' => 'nta', 'Nitab4.5_0008983g0010' => 'nta', 'Nitab4.5_0009017g0020' => 'nta', 'Nn1g02132' => 'nnu', 'Nn1g03492' => 'nnu', 'Nn1g03493' => 'nnu', 'Nn1g03494' => 'nnu', 'Nn1g07164' => 'nnu', 'Nn1g07291' => 'nnu', 'Nn2g10655' => 'nnu', 'Nn2g11652' => 'nnu', 'Nn2g14008' => 'nnu', 'Nn3g17476' => 'nnu', 'Nn3g17477' => 'nnu', 'Nn4g22370' => 'nnu', 'Nn4g25255' => 'nnu', 'Nn5g27755' => 'nnu', 'Nn6g34260' => 'nnu', 'Nn6g35041' => 'nnu', 'Oeu005924.1' => 'oeu', 'Oeu008383.1' => 'oeu', 'Oeu014928.1' => 'oeu', 'Oeu019889.1' => 'oeu', 'Oeu022271.1' => 'oeu', 'Oeu025271.1' => 'oeu', 'Oeu036302.1' => 'oeu', 'Oeu044100.1' => 'oeu', 'Os01g0528300' => 'osa', 'Os03g0286200' => 'osa', 'Os04g0406600' => 'osa', 'Os07g0512000' => 'osa', 'Os07g0694600' => 'osa', 'Os08g0411000' => 'osa', 'Os09g0565700' => 'osa', 'Os09g0566050' => 'osa', 'Os10g0523700' => 'osa', 'Peaxi162Scf00002g00514' => 'pax', 'Peaxi162Scf00047g01817' => 'pax', 'Peaxi162Scf00114g00001' => 'pax', 'Peaxi162Scf00147g00613' => 'pax', 'Peaxi162Scf00389g00425' => 'pax', 'PGR042G1139' => 'pgr', 'PGR042G3273' => 'pgr', 'PGR102G2180' => 'pgr', 'PGR119G0234' => 'pgr', 'PGR119G0668' => 'pgr', 'PGSC0003DMG400007122' => 'stu', 'PGSC0003DMG400016478' => 'stu', 'PGSC0003DMG400025374' => 'stu', 'PGSC0003DMG400026536' => 'stu', 'Phvul.003G079600' => 'pvu', 'Phvul.005G115600' => 'pvu', 'Phvul.005G127100' => 'pvu', 'Phvul.006G149500' => 'pvu', 'Phvul.006G149600' => 'pvu', 'Phvul.011G071800' => 'pvu', 'Phvul.011G090400' => 'pvu', 'Potri.004G013400' => 'ptr', 'Potri.004G188100' => 'ptr', 'Potri.008G195500' => 'ptr', 'Potri.009G148800' => 'ptr', 'Potri.011G004700' => 'ptr', 'Pp3c17_22810' => 'ppa', 'Pp3c18_4480' => 'ppa', 'Pp3c19_13030' => 'ppa', 'Pp3c1_33620' => 'ppa', 'Pp3c2_9380' => 'ppa', 'PRCOL_00001023' => 'pco', 'Prupe.3G216300' => 'ppe', 'Prupe.4G019500' => 'ppe', 'Prupe.6G092500' => 'ppe', 'Prupe.6G119200' => 'ppe', 'Psat0s1945g0080' => 'psa', 'Psat0s4167g0040' => 'psa', 'Psat1g185800' => 'psa', 'Psat4g006440' => 'psa', 'Psat4g006480' => 'psa', 'Psat4g168120' => 'psa', 'Psat5g255680' => 'psa', 'Psat5g261760' => 'psa', 'Psat7g222120' => 'psa', 'PSO063G7252' => 'pso', 'PSO170G4778' => 'pso', 'PSO210G2249' => 'pso', 'PSO339G2411' => 'pso', 'PSO339G2457' => 'pso', 'PSO339G2854' => 'pso', 'PSO339G4288' => 'pso', 'PSO339G4615' => 'pso', 'PSO384G2796' => 'pso', 'PSO384G2940' => 'pso', 'PSO384G4227' => 'pso', 'PSO478G1425' => 'pso', 'PSO541G3863' => 'pso', 'PSO675G0507' => 'pso', 'PSO782G0338' => 'pso', 'PSO832G0644' => 'pso', 'QL01p013664' => 'qlo', 'QL01p036598' => 'qlo', 'QL05p072984' => 'qlo', 'QL08p005768' => 'qlo', 'QL08p032743' => 'qlo', 'QL93p0073_0439' => 'qlo', 'QL93p0073_0444' => 'qlo', 'RcHm_v2.0_Chr5g0002851' => 'rch', 'RcHm_v2.0_Chr5g0055201' => 'rch', 'RcHm_v2.0_Chr5g0061191' => 'rch', 'RcHm_v2.0_Chr7g0203231' => 'rch', 'Rhsim01G0208100' => 'rsi', 'Rhsim01G0208200' => 'rsi', 'Rhsim02G0106500' => 'rsi', 'Rhsim03G0107900' => 'rsi', 'Rhsim06G0163400' => 'rsi', 'Rhsim13G0105200' => 'rsi', 'Sabra04G0006300' => 'sbr', 'Sabra04G0127000' => 'sbr', 'Sabra08G0148700' => 'sbr', 'Sabra09G0117400' => 'sbr', 'SalBow1G3326' => 'sbo', 'SalBow3G3228' => 'sbo', 'SalBow6G1634' => 'sbo', 'SalBow6G3603' => 'sbo', 'SalBow6G5266' => 'sbo', 'SalBow7G2265' => 'sbo', 'SalBow8G0850' => 'sbo', 'SalBow8G2592' => 'sbo', 'Sc05g0009240' => 'sci', 'Sc12g0002300' => 'sci', 'Sc21g0000100' => 'sci', 'Sc21g0004720' => 'sci', 'Sed0002949' => 'sed', 'Sed0004114' => 'sed', 'Sed0004306' => 'sed', 'Sed0006172' => 'sed', 'Sed0008413' => 'sed', 'Sed0013809' => 'sed', 'Sed0019556' => 'sed', 'SEGI_03570' => 'sgi', 'SEGI_07859' => 'sgi', 'SEGI_15042' => 'sgi', 'SEGI_16263' => 'sgi', 'SEGI_16552' => 'sgi', 'SEGI_24331' => 'sgi', 'SEGI_27316' => 'sgi', 'SEGI_29521' => 'sgi', 'SEGI_41342' => 'sgi', 'SGA_v2.0_scaffold27G11617' => 'sas', 'SGA_v2.0_scaffold316G48428' => 'sas', 'SGA_v2.0_scaffold49G18261' => 'sas', 'SGA_v2.0_scaffold7G03831' => 'sas', 'SGA_v2.0_scaffold93G28359' => 'sas', 'SHI02210' => 'shi', 'SHI06028' => 'shi', 'SHI06321' => 'shi', 'SMO111G0012' => 'smo', 'SMO228G0080' => 'smo', 'SMO356G0756' => 'smo', 'Solyc02g080620.3' => 'sly', 'Solyc06g074530.1' => 'sly', 'Solyc11g066890.1' => 'sly', 'Solyc11g072520.3' => 'sly', 'Sopen02g025330' => 'spe', 'Sopen06g031000' => 'spe', 'Sopen09g008240' => 'spe', 'Sopen09g025210' => 'spe', 'Sopen11g026600' => 'spe', 'Sopen11g030170' => 'spe', 'Sp1g10420' => 'spa', 'Sp3g06570' => 'spa', 'Sp4g10660' => 'spa', 'Sp5g16460' => 'spa', 'Sp6g22710' => 'spa', 'TAR365G0112' => 'tar', 'TAR369G0717' => 'tar', 'TAR374G0976' => 'tar', 'TAR623G1128' => 'tar', 'TAR626G1937' => 'tar', 'TAR627G0123' => 'tar', 'TAR628G0305' => 'tar', 'TAR636G1176' => 'tar', 'TAR636G2442' => 'tar', 'THA.LOC104800556' => 'tha', 'THA.LOC104809501' => 'tha', 'THA.LOC104815126' => 'tha', 'THA.LOC104815732' => 'tha', 'THA.LOC104823528' => 'tha', 'Thecc.02G365600' => 'tca', 'Thecc.06G222300' => 'tca', 'Thecc.09G261800' => 'tca', 'Thecc.09G291400' => 'tca', 'Thhalv10003028m.g' => 'esa', 'Thhalv10007886m.g' => 'esa', 'Thhalv10016085m.g' => 'esa', 'Thhalv10016681m.g' => 'esa', 'Thhalv10020951m.g' => 'esa', 'TPR.G15598' => 'tpr', 'TPR.G29305' => 'tpr', 'TPR.G32395' => 'tpr', 'TPR.G36998' => 'tpr', 'TPR.G4227' => 'tpr', 'TWI18G1433' => 'twi', 'TWI31G0755' => 'twi', 'TWI38G0912' => 'twi', 'TWI75G1097' => 'twi', 'TWI75G1619' => 'twi', 'TWI79G1336' => 'twi', 'unitig_0.g943' => 'ugi', 'unitig_0.g944' => 'ugi', 'unitig_22.g6646' => 'ugi', 'unitig_37.g12681' => 'ugi', 'unitig_8.g3290' => 'ugi', 'vmacro03278' => 'vma', 'vmacro12197' => 'vma', 'vmacro14478' => 'vma', 'vmacro15787' => 'vma', 'vmacro15789' => 'vma', 'vmacro15790' => 'vma', 'vmacro15806' => 'vma', 'vmacro22907' => 'vma', 'vmacro22908' => 'vma', 'vmacro22909' => 'vma', 'vmacro23108' => 'vma', 'VMungo0540G0540' => 'vmu', 'VMungo0540G2468' => 'vmu', 'VMungo1080G0390' => 'vmu', 'VMungo1080G1165' => 'vmu', 'VMungo1127G0170' => 'vmu', 'VMungo1127G2099' => 'vmu', 'VMungo1215G3013' => 'vmu', 'Zm00001eb013110' => 'zma', 'Zm00001eb084260' => 'zma', 'Zm00001eb096110' => 'zma', 'Zm00001eb217510' => 'zma', 'Zm00001eb322550' => 'zma', 'Zm00001eb390770' => 'zma', 'Zm00001eb397170' => 'zma', 'Zm00001eb404610' => 'zma', 'Zm00001eb421790' => 'zma' ), 'gf_id' => 'HOM05D000911', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000911' ), 'data_identifier' => 'HOM05D000911', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000911', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27780' => 'bna', 'A03p35380' => 'bna', 'A04p21160' => 'bna', 'A05p40570' => 'bna', 'A06p26900' => 'bna', 'A08p33230' => 'bna', 'A09p65960' => 'bna', 'A10p18290' => 'bna', 'Aa31LG1G12990' => 'aar', 'Aa31LG1G2980' => 'aar', 'Aa31LG4G14320' => 'aar', 'Aa31LG7G11800' => 'aar', 'Aa31sc36G50' => 'aar', 'Aa31sc36G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3721' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5459' => 'aag', 'Actinidia03028' => 'ach', 'Actinidia03753' => 'ach', 'Actinidia04187' => 'ach', 'Actinidia05509' => 'ach', 'Actinidia24180' => 'ach', 'Actinidia26906' => 'ach', 'Actinidia37097' => 'ach', 'Actinidia38249' => 'ach', 'Ah.01g003470' => 'amhyb', 'Ah.01g004580' => 'amhyb', 'Ah.01g014850' => 'amhyb', 'Ah.01g016830' => 'amhyb', 'Ah.14g088000' => 'amhyb', 'AL1G22980' => 'aly', 'AL3G18990' => 'aly', 'AL4G22440' => 'aly', 'AL4G33180' => 'aly', 'AL5G22920' => 'aly', 'AL6G33660' => 'aly', 'AL8G20720' => 'aly', 'Aqoxy1G00935' => 'aox', 'Aqoxy1G02094' => 'aox', 'Aqoxy2G01239' => 'aox', 'Aqoxy4G01870' => 'aox', 'Aqoxy7G00450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.36ZVTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71EM27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5D6C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH3WRE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3NCM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RIM768' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YB5YRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z36GDV' => 'arhy', 'AT1G08250' => 'ath', 'AT1G11790' => 'ath', 'AT2G27820' => 'ath', 'AT3G07630' => 'ath', 'AT3G44720' => 'ath', 'AT5G22630' => 'ath', 'ATR0693G304' => 'atr', 'ATR0794G109' => 'atr', 'ATR0820G120' => 'atr', 'ATR1159G064' => 'atr', 'Atru.chr10.2239' => 'acertr', 'Atru.chr3.3371' => 'acertr', 'Atru.chr6.3202' => 'acertr', 'AUR62006499' => 'cqu', 'AUR62012718' => 'cqu', 'AUR62021938' => 'cqu', 'AUR62023932' => 'cqu', 'AUR62025034' => 'cqu', 'AUR62025035' => 'cqu', 'AUR62038307' => 'cqu', 'AUR62043466' => 'cqu', 'BcaB02g10748' => 'bca', 'BcaB03g13231' => 'bca', 'BcaB03g14689' => 'bca', 'BcaB05g22716' => 'bca', 'BcaB06g28172' => 'bca', 'BcaB08g36413' => 'bca', 'BcaC01g02186' => 'bca', 'BcaC01g04272' => 'bca', 'BcaC02g08080' => 'bca', 'BcaC02g08227' => 'bca', 'BcaC03g13901' => 'bca', 'BcaC04g19593' => 'bca', 'BcaC04g20874' => 'bca', 'BcaC05g29557' => 'bca', 'BcaC06g35505' => 'bca', 'BcaC07g41954' => 'bca', 'BcaC07g41955' => 'bca', 'BcaC07g41956' => 'bca', 'BcaC07g42519' => 'bca', 'BcaC07g42520' => 'bca', 'BcaC07g42523' => 'bca', 'BcaC07g42524' => 'bca', 'BcaC07g42525' => 'bca', 'BcaC08g47480' => 'bca', 'BcaC08g47481' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00530' => 'bna', 'BolC2t07178H' => 'bol', 'BolC3t16567H' => 'bol', 'BolC4t27234H' => 'bol', 'BolC5t29728H' => 'bol', 'BolC5t34622H' => 'bol', 'BolC6t40321H' => 'bol', 'BolC7t42028H' => 'bol', 'BolC8t49125H' => 'bol', 'BolC8t52538H' => 'bol', 'BolC8t52539H' => 'bol', 'BolC9t56681H' => 'bol', 'BolC9t58266H' => 'bol', 'BolSC21t60294H' => 'bol', 'BraA02t05670Z' => 'bra', 'BraA03t12716Z' => 'bra', 'BraA04t17685Z' => 'bra', 'BraA05t22788Z' => 'bra', 'BraA06t24032Z' => 'bra', 'BraA06t25625Z' => 'bra', 'BraA07t27930Z' => 'bra', 'BraA08t35242Z' => 'bra', 'BraA09t38609Z' => 'bra', 'BraA10t43905Z' => 'bra', 'C02p11060' => 'bna', 'C03p42990' => 'bna', 'C03p67310' => 'bna', 'C04p56990' => 'bna', 'C04p58660' => 'bna', 'C05p09890' => 'bna', 'C05p59680' => 'bna', 'C06p19830' => 'bna', 'C06p53040' => 'bna', 'C07p15230' => 'bna', 'C08p50070' => 'bna', 'C08p50090' => 'bna', 'C09p38330' => 'bna', 'C09p53940' => 'bna', 'CAN.G1014.1' => 'can', 'CAN.G644.30' => 'can', 'CAN.G84.47' => 'can', 'CAN.G919.8' => 'can', 'CANSAT54G0113' => 'cansat', 'CANSAT54G1286' => 'cansat', 'CANSAT64G1020' => 'cansat', 'CARHR008080' => 'chi', 'CARHR008090' => 'chi', 'CARHR012130' => 'chi', 'CARHR038390' => 'chi', 'CARHR082330' => 'chi', 'CARHR120520' => 'chi', 'CARHR151470' => 'chi', 'CARHR190950' => 'chi', 'Carub.0001s0760' => 'cru', 'Carub.0001s1146' => 'cru', 'Carub.0003s0721' => 'cru', 'Carub.0004s0858' => 'cru', 'Carub.0005s1040' => 'cru', 'Carub.0006s2035' => 'cru', 'Carub.0015s0005' => 'cru', 'Ca_01607_v3' => 'car', 'Ca_01677_v3' => 'car', 'Ca_06087_v3' => 'car', 'Ca_19238_v3' => 'car', 'Ca_19373_v3' => 'car', 'Ca_21079_v3' => 'car', 'CBR_g54016' => 'cbr', 'CBR_g54018' => 'cbr', 'CBR_g54020' => 'cbr', 'Cc01_g09780' => 'ccan', 'Cc01_g11680' => 'ccan', 'Cc02_g15610' => 'ccan', 'Cc05_g04350' => 'ccan', 'Cc09_g01580' => 'ccan', 'CDE01G0795' => 'cde', 'CDE02G2024' => 'cde', 'CDE02G2260' => 'cde', 'CDE02G4561' => 'cde', 'CDE05G2733' => 'cde', 'CDE05G3422' => 'cde', 'CDE06G2003' => 'cde', 'CDE08G0576' => 'cde', 'CDE09G0048' => 'cde', 'CDE11G0805' => 'cde', 'Cfa003644' => 'cfa', 'Cfa006290' => 'cfa', 'Cfa010080' => 'cfa', 'Cfa011376' => 'cfa', 'Cfa011576' => 'cfa', 'Cfa011577' => 'cfa', 'Cfa014389' => 'cfa', 'Ciclev10006044m.g' => 'ccl', 'Ciclev10006954m.g' => 'ccl', 'Ciclev10015131m.g' => 'ccl', 'Ciclev10015580m.g' => 'ccl', 'Ciclev10028359m.g' => 'ccl', 'Ciclev10028573m.g' => 'ccl', 'CiPaw.03G159300' => 'cil', 'CiPaw.04G115100' => 'cil', 'CiPaw.09G092800' => 'cil', 'CiPaw.10G071800' => 'cil', 'CiPaw.13G105800' => 'cil', 'CiPaw.13G141000' => 'cil', 'CiPaw.14G103400' => 'cil', 'ClCG01G012700' => 'cla', 'ClCG01G012720' => 'cla', 'ClCG01G021920' => 'cla', 'ClCG02G008870' => 'cla', 'ClCG02G020840' => 'cla', 'ClCG02G021930' => 'cla', 'COL.COLO4_19302' => 'col', 'COL.COLO4_25262' => 'col', 'COL.COLO4_31788' => 'col', 'Cpa.g.c34684' => 'cpa', 'Cpa.g.c36520.1' => 'cpa', 'Cpa.g.c45626' => 'cpa', 'Cpa.g.sc121.17' => 'cpa', 'Cpa.g.sc13.22' => 'cpa', 'Cpa.g.sc87.88' => 'cpa', 'Cre06.g261800' => 'cre', 'CsaV3_1G014500' => 'csa', 'CsaV3_1G014510' => 'csa', 'CsaV3_2G034880' => 'csa', 'CsaV3_6G014760' => 'csa', 'CsaV3_6G021500' => 'csa', 'CsaV3_6G048980' => 'csa', 'CSS0002511' => 'camsi', 'CSS0007556' => 'camsi', 'CSS0008532' => 'camsi', 'CSS0009709' => 'camsi', 'CSS0010486' => 'camsi', 'CSS0016768' => 'camsi', 'CSS0023512' => 'camsi', 'CSS0025341' => 'camsi', 'CSS0027999' => 'camsi', 'CSS0028944' => 'camsi', 'CSS0032292' => 'camsi', 'CSS0032464' => 'camsi', 'CSS0037153' => 'camsi', 'CSS0039256' => 'camsi', 'CSS0048392' => 'camsi', 'CSS0050458' => 'camsi', 'DCAR_004224' => 'dca', 'DCAR_006147' => 'dca', 'DCAR_006465' => 'dca', 'DCAR_008159' => 'dca', 'DCAR_012164' => 'dca', 'DCAR_019764' => 'dca', 'Dinv05418' => 'din', 'Dinv10839' => 'din', 'Dinv12521' => 'din', 'Dinv13900' => 'din', 'Dinv29426' => 'din', 'Duzib150G0263' => 'dzi', 'Duzib168G1178' => 'dzi', 'Duzib168G1924' => 'dzi', 'Duzib170G0299' => 'dzi', 'Duzib170G0813' => 'dzi', 'Duzib235G1128' => 'dzi', 'Duzib248G1060' => 'dzi', 'ECA232G1910' => 'eca', 'ECA233G4621' => 'eca', 'ECA238G1216' => 'eca', 'ECA238G1784' => 'eca', 'ECA248G1242' => 'eca', 'EL10Ac8g20071' => 'bvu', 'EL10Ac9g21086' => 'bvu', 'EL10Ac9g22407' => 'bvu', 'EL10Ac9g22412' => 'bvu', 'Eucgr.A01119' => 'egr', 'Eucgr.E04043' => 'egr', 'Eucgr.J00428' => 'egr', 'Eucgr.J00958' => 'egr', 'FAN11G3091' => 'fan', 'FAN11G3651' => 'fan', 'FAN16G2566' => 'fan', 'FAN21G3155' => 'fan', 'FAN21G3400' => 'fan', 'FAN21G3543' => 'fan', 'FAN25G0234' => 'fan', 'FAN25G1422' => 'fan', 'FAN25G3392' => 'fan', 'FvH4_3g01940' => 'fve', 'FvH4_3g29870' => 'fve', 'FvH4_3g33680' => 'fve', 'Glyma.09G004200' => 'gma', 'Glyma.11G151288' => 'gma', 'Glyma.11G189100' => 'gma', 'Glyma.12G072500' => 'gma', 'Glyma.12G085500' => 'gma', 'Glyma.12G181800' => 'gma', 'Glyma.12G193000' => 'gma', 'Glyma.13G309300' => 'gma', 'Glyma.13G319000' => 'gma', 'Glyma.17G012600' => 'gma', 'Gohir.A06G148600' => 'ghi', 'Gohir.A07G115800' => 'ghi', 'Gohir.A08G003600' => 'ghi', 'Gohir.A09G093300' => 'ghi', 'Gohir.A09G105400' => 'ghi', 'Gohir.A09G105500' => 'ghi', 'Gohir.D06G154600' => 'ghi', 'Gohir.D07G120200' => 'ghi', 'Gohir.D08G013900' => 'ghi', 'Gohir.D09G093100' => 'ghi', 'Gohir.D09G102200' => 'ghi', 'Gohir.D09G102300' => 'ghi', 'Gorai.001G129400' => 'gra', 'Gorai.004G008200' => 'gra', 'Gorai.006G109800' => 'gra', 'Gorai.006G119500' => 'gra', 'Gorai.006G121300' => 'gra', 'Gorai.010G180700' => 'gra', 'GSVIVG01012716001' => 'vvi', 'GSVIVG01025118001' => 'vvi', 'GSVIVG01030439001' => 'vvi', 'GSVIVG01031397001' => 'vvi', 'HanXRQChr01g0004201' => 'han', 'HanXRQChr02g0054941' => 'han', 'HanXRQChr05g0141811' => 'han', 'HanXRQChr07g0197751' => 'han', 'HanXRQChr11g0346691' => 'han', 'HanXRQChr13g0396971' => 'han', 'HanXRQChr14g0432951' => 'han', 'HanXRQChr14g0452001' => 'han', 'HanXRQChr15g0496681' => 'han', 'HanXRQChr17g0557491' => 'han', 'HanXRQChr17g0557501' => 'han', 'Haze_06809' => 'cav', 'Haze_12852' => 'cav', 'Haze_15850' => 'cav', 'Haze_23446' => 'cav', 'Haze_23942' => 'cav', 'Haze_23943' => 'cav', 'Hma1.2p1_0091F.1_g046450' => 'hma', 'Hma1.2p1_0128F.1_g059910' => 'hma', 'Hma1.2p1_0249F.1_g102260' => 'hma', 'Hma1.2p1_0453F.1_g156190' => 'hma', 'Hma1.2p1_0695F.1_g204380' => 'hma', 'Hma1.2p1_0749F.1_g212650' => 'hma', 'Hma1.2p1_2156F.1_g315420' => 'hma', 'Hma1.2p1_2686F.1_g326940' => 'hma', 'HPP92_006428' => 'vpl', 'HPP92_012069' => 'vpl', 'HPP92_014129' => 'vpl', 'HPP92_014133' => 'vpl', 'HPP92_017315' => 'vpl', 'HPP92_026445' => 'vpl', 'HPP92_026446' => 'vpl', 'Hund00774' => 'sun', 'Hund07682' => 'sun', 'Hund21413' => 'sun', 'Hund23462' => 'sun', 'Hund23463' => 'sun', 'Lalb_Chr03g0027911' => 'lal', 'Lalb_Chr13g0304271' => 'lal', 'Lalb_Chr19g0137471' => 'lal', 'Lalb_Chr22g0350651' => 'lal', 'Lalb_Chr24g0395151' => 'lal', 'Lj1A1231T40' => 'lonja', 'Lj1A221T48' => 'lonja', 'Lj1C924T12' => 'lonja', 'Lj2C993G6' => 'lonja', 'Lj3g0005790' => 'lja', 'Lj3g0015432' => 'lja', 'Lj3g0017722' => 'lja', 'Lj3g0018497' => 'lja', 'Lj4g0025071' => 'lja', 'Lsat_1_v5_gn_1_129680' => 'lsa', 'Lsat_1_v5_gn_2_25321' => 'lsa', 'Lsat_1_v5_gn_2_95461' => 'lsa', 'Lsat_1_v5_gn_4_159620' => 'lsa', 'Lsat_1_v5_gn_6_41301' => 'lsa', 'Lsat_1_v5_gn_6_74660' => 'lsa', 'Lsat_1_v5_gn_7_11520' => 'lsa', 'Lsat_1_v5_gn_9_67680' => 'lsa', 'Manes.04G008300' => 'mes', 'Manes.04G008400' => 'mes', 'Manes.04G026500' => 'mes', 'Manes.10G135300' => 'mes', 'Manes.11G157300' => 'mes', 'Manes.12G074000' => 'mes', 'Manes.16G006200' => 'mes', 'Manes.17G026400' => 'mes', 'Mapoly0024s0086' => 'mpo', 'Mapoly0024s0087' => 'mpo', 'Mapoly0071s0057' => 'mpo', 'Mapoly0204s0012' => 'mpo', 'MBI04_g37681_MAGBIO' => 'mbi', 'MBI05_g17779_MAGBIO' => 'mbi', 'MBI12_g31184_MAGBIO' => 'mbi', 'MBI17_g11083_MAGBIO' => 'mbi', 'MBI18_g03883_MAGBIO' => 'mbi', 'MBI18_g28940_MAGBIO' => 'mbi', 'MCO01G690' => 'mco', 'MD03G1109900' => 'mdo', 'MD03G1134800' => 'mdo', 'MD05G1348000' => 'mdo', 'MD10G1322400' => 'mdo', 'MD11G1123300' => 'mdo', 'MD11G1157600' => 'mdo', 'Medtr2g084875' => 'mtr', 'Medtr2g088130' => 'mtr', 'Medtr4g055310' => 'mtr', 'Medtr4g061070' => 'mtr', 'Medtr4g132250' => 'mtr', 'MELO3C004795.2' => 'cme', 'MELO3C004797.2' => 'cme', 'MELO3C007396.2' => 'cme', 'MELO3C019277.2' => 'cme', 'MELO3C021449.2' => 'cme', 'MELO3C025736.2' => 'cme', 'Migut.D02175' => 'egut', 'Migut.H01573' => 'egut', 'Migut.M01327' => 'egut', 'Migut.N02513' => 'egut', 'MSTRG.14638' => 'ama', 'MSTRG.18632' => 'ama', 'MSTRG.7203' => 'ama', 'Nitab4.5_0000533g0140' => 'nta', 'Nitab4.5_0000888g0150' => 'nta', 'Nitab4.5_0001453g0040' => 'nta', 'Nitab4.5_0002827g0090' => 'nta', 'Nitab4.5_0003082g0040' => 'nta', 'Nitab4.5_0007799g0040' => 'nta', 'Nitab4.5_0008983g0010' => 'nta', 'Nitab4.5_0009017g0020' => 'nta', 'Nn1g02132' => 'nnu', 'Nn1g03492' => 'nnu', 'Nn1g03493' => 'nnu', 'Nn1g03494' => 'nnu', 'Nn1g07164' => 'nnu', 'Nn1g07291' => 'nnu', 'Nn2g10655' => 'nnu', 'Nn2g11652' => 'nnu', 'Nn2g14008' => 'nnu', 'Nn3g17476' => 'nnu', 'Nn3g17477' => 'nnu', 'Nn4g22370' => 'nnu', 'Nn4g25255' => 'nnu', 'Nn5g27755' => 'nnu', 'Nn6g34260' => 'nnu', 'Nn6g35041' => 'nnu', 'Oeu005924.1' => 'oeu', 'Oeu008383.1' => 'oeu', 'Oeu014928.1' => 'oeu', 'Oeu019889.1' => 'oeu', 'Oeu022271.1' => 'oeu', 'Oeu025271.1' => 'oeu', 'Oeu036302.1' => 'oeu', 'Oeu044100.1' => 'oeu', 'Os01g0528300' => 'osa', 'Os03g0286200' => 'osa', 'Os04g0406600' => 'osa', 'Os07g0512000' => 'osa', 'Os07g0694600' => 'osa', 'Os08g0411000' => 'osa', 'Os09g0565700' => 'osa', 'Os09g0566050' => 'osa', 'Os10g0523700' => 'osa', 'Peaxi162Scf00002g00514' => 'pax', 'Peaxi162Scf00047g01817' => 'pax', 'Peaxi162Scf00114g00001' => 'pax', 'Peaxi162Scf00147g00613' => 'pax', 'Peaxi162Scf00389g00425' => 'pax', 'PGR042G1139' => 'pgr', 'PGR042G3273' => 'pgr', 'PGR102G2180' => 'pgr', 'PGR119G0234' => 'pgr', 'PGR119G0668' => 'pgr', 'PGSC0003DMG400007122' => 'stu', 'PGSC0003DMG400016478' => 'stu', 'PGSC0003DMG400025374' => 'stu', 'PGSC0003DMG400026536' => 'stu', 'Phvul.003G079600' => 'pvu', 'Phvul.005G115600' => 'pvu', 'Phvul.005G127100' => 'pvu', 'Phvul.006G149500' => 'pvu', 'Phvul.006G149600' => 'pvu', 'Phvul.011G071800' => 'pvu', 'Phvul.011G090400' => 'pvu', 'Potri.004G013400' => 'ptr', 'Potri.004G188100' => 'ptr', 'Potri.008G195500' => 'ptr', 'Potri.009G148800' => 'ptr', 'Potri.011G004700' => 'ptr', 'Pp3c17_22810' => 'ppa', 'Pp3c18_4480' => 'ppa', 'Pp3c19_13030' => 'ppa', 'Pp3c1_33620' => 'ppa', 'Pp3c2_9380' => 'ppa', 'PRCOL_00001023' => 'pco', 'Prupe.3G216300' => 'ppe', 'Prupe.4G019500' => 'ppe', 'Prupe.6G092500' => 'ppe', 'Prupe.6G119200' => 'ppe', 'Psat0s1945g0080' => 'psa', 'Psat0s4167g0040' => 'psa', 'Psat1g185800' => 'psa', 'Psat4g006440' => 'psa', 'Psat4g006480' => 'psa', 'Psat4g168120' => 'psa', 'Psat5g255680' => 'psa', 'Psat5g261760' => 'psa', 'Psat7g222120' => 'psa', 'PSO063G7252' => 'pso', 'PSO170G4778' => 'pso', 'PSO210G2249' => 'pso', 'PSO339G2411' => 'pso', 'PSO339G2457' => 'pso', 'PSO339G2854' => 'pso', 'PSO339G4288' => 'pso', 'PSO339G4615' => 'pso', 'PSO384G2796' => 'pso', 'PSO384G2940' => 'pso', 'PSO384G4227' => 'pso', 'PSO478G1425' => 'pso', 'PSO541G3863' => 'pso', 'PSO675G0507' => 'pso', 'PSO782G0338' => 'pso', 'PSO832G0644' => 'pso', 'QL01p013664' => 'qlo', 'QL01p036598' => 'qlo', 'QL05p072984' => 'qlo', 'QL08p005768' => 'qlo', 'QL08p032743' => 'qlo', 'QL93p0073_0439' => 'qlo', 'QL93p0073_0444' => 'qlo', 'RcHm_v2.0_Chr5g0002851' => 'rch', 'RcHm_v2.0_Chr5g0055201' => 'rch', 'RcHm_v2.0_Chr5g0061191' => 'rch', 'RcHm_v2.0_Chr7g0203231' => 'rch', 'Rhsim01G0208100' => 'rsi', 'Rhsim01G0208200' => 'rsi', 'Rhsim02G0106500' => 'rsi', 'Rhsim03G0107900' => 'rsi', 'Rhsim06G0163400' => 'rsi', 'Rhsim13G0105200' => 'rsi', 'Sabra04G0006300' => 'sbr', 'Sabra04G0127000' => 'sbr', 'Sabra08G0148700' => 'sbr', 'Sabra09G0117400' => 'sbr', 'SalBow1G3326' => 'sbo', 'SalBow3G3228' => 'sbo', 'SalBow6G1634' => 'sbo', 'SalBow6G3603' => 'sbo', 'SalBow6G5266' => 'sbo', 'SalBow7G2265' => 'sbo', 'SalBow8G0850' => 'sbo', 'SalBow8G2592' => 'sbo', 'Sc05g0009240' => 'sci', 'Sc12g0002300' => 'sci', 'Sc21g0000100' => 'sci', 'Sc21g0004720' => 'sci', 'Sed0002949' => 'sed', 'Sed0004114' => 'sed', 'Sed0004306' => 'sed', 'Sed0006172' => 'sed', 'Sed0008413' => 'sed', 'Sed0013809' => 'sed', 'Sed0019556' => 'sed', 'SEGI_03570' => 'sgi', 'SEGI_07859' => 'sgi', 'SEGI_15042' => 'sgi', 'SEGI_16263' => 'sgi', 'SEGI_16552' => 'sgi', 'SEGI_24331' => 'sgi', 'SEGI_27316' => 'sgi', 'SEGI_29521' => 'sgi', 'SEGI_41342' => 'sgi', 'SGA_v2.0_scaffold27G11617' => 'sas', 'SGA_v2.0_scaffold316G48428' => 'sas', 'SGA_v2.0_scaffold49G18261' => 'sas', 'SGA_v2.0_scaffold7G03831' => 'sas', 'SGA_v2.0_scaffold93G28359' => 'sas', 'SHI02210' => 'shi', 'SHI06028' => 'shi', 'SHI06321' => 'shi', 'SMO111G0012' => 'smo', 'SMO228G0080' => 'smo', 'SMO356G0756' => 'smo', 'Solyc02g080620.3' => 'sly', 'Solyc06g074530.1' => 'sly', 'Solyc11g066890.1' => 'sly', 'Solyc11g072520.3' => 'sly', 'Sopen02g025330' => 'spe', 'Sopen06g031000' => 'spe', 'Sopen09g008240' => 'spe', 'Sopen09g025210' => 'spe', 'Sopen11g026600' => 'spe', 'Sopen11g030170' => 'spe', 'Sp1g10420' => 'spa', 'Sp3g06570' => 'spa', 'Sp4g10660' => 'spa', 'Sp5g16460' => 'spa', 'Sp6g22710' => 'spa', 'TAR365G0112' => 'tar', 'TAR369G0717' => 'tar', 'TAR374G0976' => 'tar', 'TAR623G1128' => 'tar', 'TAR626G1937' => 'tar', 'TAR627G0123' => 'tar', 'TAR628G0305' => 'tar', 'TAR636G1176' => 'tar', 'TAR636G2442' => 'tar', 'THA.LOC104800556' => 'tha', 'THA.LOC104809501' => 'tha', 'THA.LOC104815126' => 'tha', 'THA.LOC104815732' => 'tha', 'THA.LOC104823528' => 'tha', 'Thecc.02G365600' => 'tca', 'Thecc.06G222300' => 'tca', 'Thecc.09G261800' => 'tca', 'Thecc.09G291400' => 'tca', 'Thhalv10003028m.g' => 'esa', 'Thhalv10007886m.g' => 'esa', 'Thhalv10016085m.g' => 'esa', 'Thhalv10016681m.g' => 'esa', 'Thhalv10020951m.g' => 'esa', 'TPR.G15598' => 'tpr', 'TPR.G29305' => 'tpr', 'TPR.G32395' => 'tpr', 'TPR.G36998' => 'tpr', 'TPR.G4227' => 'tpr', 'TWI18G1433' => 'twi', 'TWI31G0755' => 'twi', 'TWI38G0912' => 'twi', 'TWI75G1097' => 'twi', 'TWI75G1619' => 'twi', 'TWI79G1336' => 'twi', 'unitig_0.g943' => 'ugi', 'unitig_0.g944' => 'ugi', 'unitig_22.g6646' => 'ugi', 'unitig_37.g12681' => 'ugi', 'unitig_8.g3290' => 'ugi', 'vmacro03278' => 'vma', 'vmacro12197' => 'vma', 'vmacro14478' => 'vma', 'vmacro15787' => 'vma', 'vmacro15789' => 'vma', 'vmacro15790' => 'vma', 'vmacro15806' => 'vma', 'vmacro22907' => 'vma', 'vmacro22908' => 'vma', 'vmacro22909' => 'vma', 'vmacro23108' => 'vma', 'VMungo0540G0540' => 'vmu', 'VMungo0540G2468' => 'vmu', 'VMungo1080G0390' => 'vmu', 'VMungo1080G1165' => 'vmu', 'VMungo1127G0170' => 'vmu', 'VMungo1127G2099' => 'vmu', 'VMungo1215G3013' => 'vmu', 'Zm00001eb013110' => 'zma', 'Zm00001eb084260' => 'zma', 'Zm00001eb096110' => 'zma', 'Zm00001eb217510' => 'zma', 'Zm00001eb322550' => 'zma', 'Zm00001eb390770' => 'zma', 'Zm00001eb397170' => 'zma', 'Zm00001eb404610' => 'zma', 'Zm00001eb421790' => 'zma' ) $gf_id = 'HOM05D000911' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000911' ) $data_identifier = 'HOM05D000911' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 16, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 5, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 6, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 8, 'nnu' => (int) 16, 'oeu' => (int) 8, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 5, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 16, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421790' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000911', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27780' => 'bna', 'A03p35380' => 'bna', 'A04p21160' => 'bna', 'A05p40570' => 'bna', 'A06p26900' => 'bna', 'A08p33230' => 'bna', 'A09p65960' => 'bna', 'A10p18290' => 'bna', 'Aa31LG1G12990' => 'aar', 'Aa31LG1G2980' => 'aar', 'Aa31LG4G14320' => 'aar', 'Aa31LG7G11800' => 'aar', 'Aa31sc36G50' => 'aar', 'Aa31sc36G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3721' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5459' => 'aag', 'Actinidia03028' => 'ach', 'Actinidia03753' => 'ach', 'Actinidia04187' => 'ach', 'Actinidia05509' => 'ach', 'Actinidia24180' => 'ach', 'Actinidia26906' => 'ach', 'Actinidia37097' => 'ach', 'Actinidia38249' => 'ach', 'Ah.01g003470' => 'amhyb', 'Ah.01g004580' => 'amhyb', 'Ah.01g014850' => 'amhyb', 'Ah.01g016830' => 'amhyb', 'Ah.14g088000' => 'amhyb', 'AL1G22980' => 'aly', 'AL3G18990' => 'aly', 'AL4G22440' => 'aly', 'AL4G33180' => 'aly', 'AL5G22920' => 'aly', 'AL6G33660' => 'aly', 'AL8G20720' => 'aly', 'Aqoxy1G00935' => 'aox', 'Aqoxy1G02094' => 'aox', 'Aqoxy2G01239' => 'aox', 'Aqoxy4G01870' => 'aox', 'Aqoxy7G00450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.36ZVTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71EM27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5D6C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH3WRE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3NCM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RIM768' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YB5YRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z36GDV' => 'arhy', 'AT1G08250' => 'ath', 'AT1G11790' => 'ath', 'AT2G27820' => 'ath', 'AT3G07630' => 'ath', 'AT3G44720' => 'ath', 'AT5G22630' => 'ath', 'ATR0693G304' => 'atr', 'ATR0794G109' => 'atr', 'ATR0820G120' => 'atr', 'ATR1159G064' => 'atr', 'Atru.chr10.2239' => 'acertr', 'Atru.chr3.3371' => 'acertr', 'Atru.chr6.3202' => 'acertr', 'AUR62006499' => 'cqu', 'AUR62012718' => 'cqu', 'AUR62021938' => 'cqu', 'AUR62023932' => 'cqu', 'AUR62025034' => 'cqu', 'AUR62025035' => 'cqu', 'AUR62038307' => 'cqu', 'AUR62043466' => 'cqu', 'BcaB02g10748' => 'bca', 'BcaB03g13231' => 'bca', 'BcaB03g14689' => 'bca', 'BcaB05g22716' => 'bca', 'BcaB06g28172' => 'bca', 'BcaB08g36413' => 'bca', 'BcaC01g02186' => 'bca', 'BcaC01g04272' => 'bca', 'BcaC02g08080' => 'bca', 'BcaC02g08227' => 'bca', 'BcaC03g13901' => 'bca', 'BcaC04g19593' => 'bca', 'BcaC04g20874' => 'bca', 'BcaC05g29557' => 'bca', 'BcaC06g35505' => 'bca', 'BcaC07g41954' => 'bca', 'BcaC07g41955' => 'bca', 'BcaC07g41956' => 'bca', 'BcaC07g42519' => 'bca', 'BcaC07g42520' => 'bca', 'BcaC07g42523' => 'bca', 'BcaC07g42524' => 'bca', 'BcaC07g42525' => 'bca', 'BcaC08g47480' => 'bca', 'BcaC08g47481' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00530' => 'bna', 'BolC2t07178H' => 'bol', 'BolC3t16567H' => 'bol', 'BolC4t27234H' => 'bol', 'BolC5t29728H' => 'bol', 'BolC5t34622H' => 'bol', 'BolC6t40321H' => 'bol', 'BolC7t42028H' => 'bol', 'BolC8t49125H' => 'bol', 'BolC8t52538H' => 'bol', 'BolC8t52539H' => 'bol', 'BolC9t56681H' => 'bol', 'BolC9t58266H' => 'bol', 'BolSC21t60294H' => 'bol', 'BraA02t05670Z' => 'bra', 'BraA03t12716Z' => 'bra', 'BraA04t17685Z' => 'bra', 'BraA05t22788Z' => 'bra', 'BraA06t24032Z' => 'bra', 'BraA06t25625Z' => 'bra', 'BraA07t27930Z' => 'bra', 'BraA08t35242Z' => 'bra', 'BraA09t38609Z' => 'bra', 'BraA10t43905Z' => 'bra', 'C02p11060' => 'bna', 'C03p42990' => 'bna', 'C03p67310' => 'bna', 'C04p56990' => 'bna', 'C04p58660' => 'bna', 'C05p09890' => 'bna', 'C05p59680' => 'bna', 'C06p19830' => 'bna', 'C06p53040' => 'bna', 'C07p15230' => 'bna', 'C08p50070' => 'bna', 'C08p50090' => 'bna', 'C09p38330' => 'bna', 'C09p53940' => 'bna', 'CAN.G1014.1' => 'can', 'CAN.G644.30' => 'can', 'CAN.G84.47' => 'can', 'CAN.G919.8' => 'can', 'CANSAT54G0113' => 'cansat', 'CANSAT54G1286' => 'cansat', 'CANSAT64G1020' => 'cansat', 'CARHR008080' => 'chi', 'CARHR008090' => 'chi', 'CARHR012130' => 'chi', 'CARHR038390' => 'chi', 'CARHR082330' => 'chi', 'CARHR120520' => 'chi', 'CARHR151470' => 'chi', 'CARHR190950' => 'chi', 'Carub.0001s0760' => 'cru', 'Carub.0001s1146' => 'cru', 'Carub.0003s0721' => 'cru', 'Carub.0004s0858' => 'cru', 'Carub.0005s1040' => 'cru', 'Carub.0006s2035' => 'cru', 'Carub.0015s0005' => 'cru', 'Ca_01607_v3' => 'car', 'Ca_01677_v3' => 'car', 'Ca_06087_v3' => 'car', 'Ca_19238_v3' => 'car', 'Ca_19373_v3' => 'car', 'Ca_21079_v3' => 'car', 'CBR_g54016' => 'cbr', 'CBR_g54018' => 'cbr', 'CBR_g54020' => 'cbr', 'Cc01_g09780' => 'ccan', 'Cc01_g11680' => 'ccan', 'Cc02_g15610' => 'ccan', 'Cc05_g04350' => 'ccan', 'Cc09_g01580' => 'ccan', 'CDE01G0795' => 'cde', 'CDE02G2024' => 'cde', 'CDE02G2260' => 'cde', 'CDE02G4561' => 'cde', 'CDE05G2733' => 'cde', 'CDE05G3422' => 'cde', 'CDE06G2003' => 'cde', 'CDE08G0576' => 'cde', 'CDE09G0048' => 'cde', 'CDE11G0805' => 'cde', 'Cfa003644' => 'cfa', 'Cfa006290' => 'cfa', 'Cfa010080' => 'cfa', 'Cfa011376' => 'cfa', 'Cfa011576' => 'cfa', 'Cfa011577' => 'cfa', 'Cfa014389' => 'cfa', 'Ciclev10006044m.g' => 'ccl', 'Ciclev10006954m.g' => 'ccl', 'Ciclev10015131m.g' => 'ccl', 'Ciclev10015580m.g' => 'ccl', 'Ciclev10028359m.g' => 'ccl', 'Ciclev10028573m.g' => 'ccl', 'CiPaw.03G159300' => 'cil', 'CiPaw.04G115100' => 'cil', 'CiPaw.09G092800' => 'cil', 'CiPaw.10G071800' => 'cil', 'CiPaw.13G105800' => 'cil', 'CiPaw.13G141000' => 'cil', 'CiPaw.14G103400' => 'cil', 'ClCG01G012700' => 'cla', 'ClCG01G012720' => 'cla', 'ClCG01G021920' => 'cla', 'ClCG02G008870' => 'cla', 'ClCG02G020840' => 'cla', 'ClCG02G021930' => 'cla', 'COL.COLO4_19302' => 'col', 'COL.COLO4_25262' => 'col', 'COL.COLO4_31788' => 'col', 'Cpa.g.c34684' => 'cpa', 'Cpa.g.c36520.1' => 'cpa', 'Cpa.g.c45626' => 'cpa', 'Cpa.g.sc121.17' => 'cpa', 'Cpa.g.sc13.22' => 'cpa', 'Cpa.g.sc87.88' => 'cpa', 'Cre06.g261800' => 'cre', 'CsaV3_1G014500' => 'csa', 'CsaV3_1G014510' => 'csa', 'CsaV3_2G034880' => 'csa', 'CsaV3_6G014760' => 'csa', 'CsaV3_6G021500' => 'csa', 'CsaV3_6G048980' => 'csa', 'CSS0002511' => 'camsi', 'CSS0007556' => 'camsi', 'CSS0008532' => 'camsi', 'CSS0009709' => 'camsi', 'CSS0010486' => 'camsi', 'CSS0016768' => 'camsi', 'CSS0023512' => 'camsi', 'CSS0025341' => 'camsi', 'CSS0027999' => 'camsi', 'CSS0028944' => 'camsi', 'CSS0032292' => 'camsi', 'CSS0032464' => 'camsi', 'CSS0037153' => 'camsi', 'CSS0039256' => 'camsi', 'CSS0048392' => 'camsi', 'CSS0050458' => 'camsi', 'DCAR_004224' => 'dca', 'DCAR_006147' => 'dca', 'DCAR_006465' => 'dca', 'DCAR_008159' => 'dca', 'DCAR_012164' => 'dca', 'DCAR_019764' => 'dca', 'Dinv05418' => 'din', 'Dinv10839' => 'din', 'Dinv12521' => 'din', 'Dinv13900' => 'din', 'Dinv29426' => 'din', 'Duzib150G0263' => 'dzi', 'Duzib168G1178' => 'dzi', 'Duzib168G1924' => 'dzi', 'Duzib170G0299' => 'dzi', 'Duzib170G0813' => 'dzi', 'Duzib235G1128' => 'dzi', 'Duzib248G1060' => 'dzi', 'ECA232G1910' => 'eca', 'ECA233G4621' => 'eca', 'ECA238G1216' => 'eca', 'ECA238G1784' => 'eca', 'ECA248G1242' => 'eca', 'EL10Ac8g20071' => 'bvu', 'EL10Ac9g21086' => 'bvu', 'EL10Ac9g22407' => 'bvu', 'EL10Ac9g22412' => 'bvu', 'Eucgr.A01119' => 'egr', 'Eucgr.E04043' => 'egr', 'Eucgr.J00428' => 'egr', 'Eucgr.J00958' => 'egr', 'FAN11G3091' => 'fan', 'FAN11G3651' => 'fan', 'FAN16G2566' => 'fan', 'FAN21G3155' => 'fan', 'FAN21G3400' => 'fan', 'FAN21G3543' => 'fan', 'FAN25G0234' => 'fan', 'FAN25G1422' => 'fan', 'FAN25G3392' => 'fan', 'FvH4_3g01940' => 'fve', 'FvH4_3g29870' => 'fve', 'FvH4_3g33680' => 'fve', 'Glyma.09G004200' => 'gma', 'Glyma.11G151288' => 'gma', 'Glyma.11G189100' => 'gma', 'Glyma.12G072500' => 'gma', 'Glyma.12G085500' => 'gma', 'Glyma.12G181800' => 'gma', 'Glyma.12G193000' => 'gma', 'Glyma.13G309300' => 'gma', 'Glyma.13G319000' => 'gma', 'Glyma.17G012600' => 'gma', 'Gohir.A06G148600' => 'ghi', 'Gohir.A07G115800' => 'ghi', 'Gohir.A08G003600' => 'ghi', 'Gohir.A09G093300' => 'ghi', 'Gohir.A09G105400' => 'ghi', 'Gohir.A09G105500' => 'ghi', 'Gohir.D06G154600' => 'ghi', 'Gohir.D07G120200' => 'ghi', 'Gohir.D08G013900' => 'ghi', 'Gohir.D09G093100' => 'ghi', 'Gohir.D09G102200' => 'ghi', 'Gohir.D09G102300' => 'ghi', 'Gorai.001G129400' => 'gra', 'Gorai.004G008200' => 'gra', 'Gorai.006G109800' => 'gra', 'Gorai.006G119500' => 'gra', 'Gorai.006G121300' => 'gra', 'Gorai.010G180700' => 'gra', 'GSVIVG01012716001' => 'vvi', 'GSVIVG01025118001' => 'vvi', 'GSVIVG01030439001' => 'vvi', 'GSVIVG01031397001' => 'vvi', 'HanXRQChr01g0004201' => 'han', 'HanXRQChr02g0054941' => 'han', 'HanXRQChr05g0141811' => 'han', 'HanXRQChr07g0197751' => 'han', 'HanXRQChr11g0346691' => 'han', 'HanXRQChr13g0396971' => 'han', 'HanXRQChr14g0432951' => 'han', 'HanXRQChr14g0452001' => 'han', 'HanXRQChr15g0496681' => 'han', 'HanXRQChr17g0557491' => 'han', 'HanXRQChr17g0557501' => 'han', 'Haze_06809' => 'cav', 'Haze_12852' => 'cav', 'Haze_15850' => 'cav', 'Haze_23446' => 'cav', 'Haze_23942' => 'cav', 'Haze_23943' => 'cav', 'Hma1.2p1_0091F.1_g046450' => 'hma', 'Hma1.2p1_0128F.1_g059910' => 'hma', 'Hma1.2p1_0249F.1_g102260' => 'hma', 'Hma1.2p1_0453F.1_g156190' => 'hma', 'Hma1.2p1_0695F.1_g204380' => 'hma', 'Hma1.2p1_0749F.1_g212650' => 'hma', 'Hma1.2p1_2156F.1_g315420' => 'hma', 'Hma1.2p1_2686F.1_g326940' => 'hma', 'HPP92_006428' => 'vpl', 'HPP92_012069' => 'vpl', 'HPP92_014129' => 'vpl', 'HPP92_014133' => 'vpl', 'HPP92_017315' => 'vpl', 'HPP92_026445' => 'vpl', 'HPP92_026446' => 'vpl', 'Hund00774' => 'sun', 'Hund07682' => 'sun', 'Hund21413' => 'sun', 'Hund23462' => 'sun', 'Hund23463' => 'sun', 'Lalb_Chr03g0027911' => 'lal', 'Lalb_Chr13g0304271' => 'lal', 'Lalb_Chr19g0137471' => 'lal', 'Lalb_Chr22g0350651' => 'lal', 'Lalb_Chr24g0395151' => 'lal', 'Lj1A1231T40' => 'lonja', 'Lj1A221T48' => 'lonja', 'Lj1C924T12' => 'lonja', 'Lj2C993G6' => 'lonja', 'Lj3g0005790' => 'lja', 'Lj3g0015432' => 'lja', 'Lj3g0017722' => 'lja', 'Lj3g0018497' => 'lja', 'Lj4g0025071' => 'lja', 'Lsat_1_v5_gn_1_129680' => 'lsa', 'Lsat_1_v5_gn_2_25321' => 'lsa', 'Lsat_1_v5_gn_2_95461' => 'lsa', 'Lsat_1_v5_gn_4_159620' => 'lsa', 'Lsat_1_v5_gn_6_41301' => 'lsa', 'Lsat_1_v5_gn_6_74660' => 'lsa', 'Lsat_1_v5_gn_7_11520' => 'lsa', 'Lsat_1_v5_gn_9_67680' => 'lsa', 'Manes.04G008300' => 'mes', 'Manes.04G008400' => 'mes', 'Manes.04G026500' => 'mes', 'Manes.10G135300' => 'mes', 'Manes.11G157300' => 'mes', 'Manes.12G074000' => 'mes', 'Manes.16G006200' => 'mes', 'Manes.17G026400' => 'mes', 'Mapoly0024s0086' => 'mpo', 'Mapoly0024s0087' => 'mpo', 'Mapoly0071s0057' => 'mpo', 'Mapoly0204s0012' => 'mpo', 'MBI04_g37681_MAGBIO' => 'mbi', 'MBI05_g17779_MAGBIO' => 'mbi', 'MBI12_g31184_MAGBIO' => 'mbi', 'MBI17_g11083_MAGBIO' => 'mbi', 'MBI18_g03883_MAGBIO' => 'mbi', 'MBI18_g28940_MAGBIO' => 'mbi', 'MCO01G690' => 'mco', 'MD03G1109900' => 'mdo', 'MD03G1134800' => 'mdo', 'MD05G1348000' => 'mdo', 'MD10G1322400' => 'mdo', 'MD11G1123300' => 'mdo', 'MD11G1157600' => 'mdo', 'Medtr2g084875' => 'mtr', 'Medtr2g088130' => 'mtr', 'Medtr4g055310' => 'mtr', 'Medtr4g061070' => 'mtr', 'Medtr4g132250' => 'mtr', 'MELO3C004795.2' => 'cme', 'MELO3C004797.2' => 'cme', 'MELO3C007396.2' => 'cme', 'MELO3C019277.2' => 'cme', 'MELO3C021449.2' => 'cme', 'MELO3C025736.2' => 'cme', 'Migut.D02175' => 'egut', 'Migut.H01573' => 'egut', 'Migut.M01327' => 'egut', 'Migut.N02513' => 'egut', 'MSTRG.14638' => 'ama', 'MSTRG.18632' => 'ama', 'MSTRG.7203' => 'ama', 'Nitab4.5_0000533g0140' => 'nta', 'Nitab4.5_0000888g0150' => 'nta', 'Nitab4.5_0001453g0040' => 'nta', 'Nitab4.5_0002827g0090' => 'nta', 'Nitab4.5_0003082g0040' => 'nta', 'Nitab4.5_0007799g0040' => 'nta', 'Nitab4.5_0008983g0010' => 'nta', 'Nitab4.5_0009017g0020' => 'nta', 'Nn1g02132' => 'nnu', 'Nn1g03492' => 'nnu', 'Nn1g03493' => 'nnu', 'Nn1g03494' => 'nnu', 'Nn1g07164' => 'nnu', 'Nn1g07291' => 'nnu', 'Nn2g10655' => 'nnu', 'Nn2g11652' => 'nnu', 'Nn2g14008' => 'nnu', 'Nn3g17476' => 'nnu', 'Nn3g17477' => 'nnu', 'Nn4g22370' => 'nnu', 'Nn4g25255' => 'nnu', 'Nn5g27755' => 'nnu', 'Nn6g34260' => 'nnu', 'Nn6g35041' => 'nnu', 'Oeu005924.1' => 'oeu', 'Oeu008383.1' => 'oeu', 'Oeu014928.1' => 'oeu', 'Oeu019889.1' => 'oeu', 'Oeu022271.1' => 'oeu', 'Oeu025271.1' => 'oeu', 'Oeu036302.1' => 'oeu', 'Oeu044100.1' => 'oeu', 'Os01g0528300' => 'osa', 'Os03g0286200' => 'osa', 'Os04g0406600' => 'osa', 'Os07g0512000' => 'osa', 'Os07g0694600' => 'osa', 'Os08g0411000' => 'osa', 'Os09g0565700' => 'osa', 'Os09g0566050' => 'osa', 'Os10g0523700' => 'osa', 'Peaxi162Scf00002g00514' => 'pax', 'Peaxi162Scf00047g01817' => 'pax', 'Peaxi162Scf00114g00001' => 'pax', 'Peaxi162Scf00147g00613' => 'pax', 'Peaxi162Scf00389g00425' => 'pax', 'PGR042G1139' => 'pgr', 'PGR042G3273' => 'pgr', 'PGR102G2180' => 'pgr', 'PGR119G0234' => 'pgr', 'PGR119G0668' => 'pgr', 'PGSC0003DMG400007122' => 'stu', 'PGSC0003DMG400016478' => 'stu', 'PGSC0003DMG400025374' => 'stu', 'PGSC0003DMG400026536' => 'stu', 'Phvul.003G079600' => 'pvu', 'Phvul.005G115600' => 'pvu', 'Phvul.005G127100' => 'pvu', 'Phvul.006G149500' => 'pvu', 'Phvul.006G149600' => 'pvu', 'Phvul.011G071800' => 'pvu', 'Phvul.011G090400' => 'pvu', 'Potri.004G013400' => 'ptr', 'Potri.004G188100' => 'ptr', 'Potri.008G195500' => 'ptr', 'Potri.009G148800' => 'ptr', 'Potri.011G004700' => 'ptr', 'Pp3c17_22810' => 'ppa', 'Pp3c18_4480' => 'ppa', 'Pp3c19_13030' => 'ppa', 'Pp3c1_33620' => 'ppa', 'Pp3c2_9380' => 'ppa', 'PRCOL_00001023' => 'pco', 'Prupe.3G216300' => 'ppe', 'Prupe.4G019500' => 'ppe', 'Prupe.6G092500' => 'ppe', 'Prupe.6G119200' => 'ppe', 'Psat0s1945g0080' => 'psa', 'Psat0s4167g0040' => 'psa', 'Psat1g185800' => 'psa', 'Psat4g006440' => 'psa', 'Psat4g006480' => 'psa', 'Psat4g168120' => 'psa', 'Psat5g255680' => 'psa', 'Psat5g261760' => 'psa', 'Psat7g222120' => 'psa', 'PSO063G7252' => 'pso', 'PSO170G4778' => 'pso', 'PSO210G2249' => 'pso', 'PSO339G2411' => 'pso', 'PSO339G2457' => 'pso', 'PSO339G2854' => 'pso', 'PSO339G4288' => 'pso', 'PSO339G4615' => 'pso', 'PSO384G2796' => 'pso', 'PSO384G2940' => 'pso', 'PSO384G4227' => 'pso', 'PSO478G1425' => 'pso', 'PSO541G3863' => 'pso', 'PSO675G0507' => 'pso', 'PSO782G0338' => 'pso', 'PSO832G0644' => 'pso', 'QL01p013664' => 'qlo', 'QL01p036598' => 'qlo', 'QL05p072984' => 'qlo', 'QL08p005768' => 'qlo', 'QL08p032743' => 'qlo', 'QL93p0073_0439' => 'qlo', 'QL93p0073_0444' => 'qlo', 'RcHm_v2.0_Chr5g0002851' => 'rch', 'RcHm_v2.0_Chr5g0055201' => 'rch', 'RcHm_v2.0_Chr5g0061191' => 'rch', 'RcHm_v2.0_Chr7g0203231' => 'rch', 'Rhsim01G0208100' => 'rsi', 'Rhsim01G0208200' => 'rsi', 'Rhsim02G0106500' => 'rsi', 'Rhsim03G0107900' => 'rsi', 'Rhsim06G0163400' => 'rsi', 'Rhsim13G0105200' => 'rsi', 'Sabra04G0006300' => 'sbr', 'Sabra04G0127000' => 'sbr', 'Sabra08G0148700' => 'sbr', 'Sabra09G0117400' => 'sbr', 'SalBow1G3326' => 'sbo', 'SalBow3G3228' => 'sbo', 'SalBow6G1634' => 'sbo', 'SalBow6G3603' => 'sbo', 'SalBow6G5266' => 'sbo', 'SalBow7G2265' => 'sbo', 'SalBow8G0850' => 'sbo', 'SalBow8G2592' => 'sbo', 'Sc05g0009240' => 'sci', 'Sc12g0002300' => 'sci', 'Sc21g0000100' => 'sci', 'Sc21g0004720' => 'sci', 'Sed0002949' => 'sed', 'Sed0004114' => 'sed', 'Sed0004306' => 'sed', 'Sed0006172' => 'sed', 'Sed0008413' => 'sed', 'Sed0013809' => 'sed', 'Sed0019556' => 'sed', 'SEGI_03570' => 'sgi', 'SEGI_07859' => 'sgi', 'SEGI_15042' => 'sgi', 'SEGI_16263' => 'sgi', 'SEGI_16552' => 'sgi', 'SEGI_24331' => 'sgi', 'SEGI_27316' => 'sgi', 'SEGI_29521' => 'sgi', 'SEGI_41342' => 'sgi', 'SGA_v2.0_scaffold27G11617' => 'sas', 'SGA_v2.0_scaffold316G48428' => 'sas', 'SGA_v2.0_scaffold49G18261' => 'sas', 'SGA_v2.0_scaffold7G03831' => 'sas', 'SGA_v2.0_scaffold93G28359' => 'sas', 'SHI02210' => 'shi', 'SHI06028' => 'shi', 'SHI06321' => 'shi', 'SMO111G0012' => 'smo', 'SMO228G0080' => 'smo', 'SMO356G0756' => 'smo', 'Solyc02g080620.3' => 'sly', 'Solyc06g074530.1' => 'sly', 'Solyc11g066890.1' => 'sly', 'Solyc11g072520.3' => 'sly', 'Sopen02g025330' => 'spe', 'Sopen06g031000' => 'spe', 'Sopen09g008240' => 'spe', 'Sopen09g025210' => 'spe', 'Sopen11g026600' => 'spe', 'Sopen11g030170' => 'spe', 'Sp1g10420' => 'spa', 'Sp3g06570' => 'spa', 'Sp4g10660' => 'spa', 'Sp5g16460' => 'spa', 'Sp6g22710' => 'spa', 'TAR365G0112' => 'tar', 'TAR369G0717' => 'tar', 'TAR374G0976' => 'tar', 'TAR623G1128' => 'tar', 'TAR626G1937' => 'tar', 'TAR627G0123' => 'tar', 'TAR628G0305' => 'tar', 'TAR636G1176' => 'tar', 'TAR636G2442' => 'tar', 'THA.LOC104800556' => 'tha', 'THA.LOC104809501' => 'tha', 'THA.LOC104815126' => 'tha', 'THA.LOC104815732' => 'tha', 'THA.LOC104823528' => 'tha', 'Thecc.02G365600' => 'tca', 'Thecc.06G222300' => 'tca', 'Thecc.09G261800' => 'tca', 'Thecc.09G291400' => 'tca', 'Thhalv10003028m.g' => 'esa', 'Thhalv10007886m.g' => 'esa', 'Thhalv10016085m.g' => 'esa', 'Thhalv10016681m.g' => 'esa', 'Thhalv10020951m.g' => 'esa', 'TPR.G15598' => 'tpr', 'TPR.G29305' => 'tpr', 'TPR.G32395' => 'tpr', 'TPR.G36998' => 'tpr', 'TPR.G4227' => 'tpr', 'TWI18G1433' => 'twi', 'TWI31G0755' => 'twi', 'TWI38G0912' => 'twi', 'TWI75G1097' => 'twi', 'TWI75G1619' => 'twi', 'TWI79G1336' => 'twi', 'unitig_0.g943' => 'ugi', 'unitig_0.g944' => 'ugi', 'unitig_22.g6646' => 'ugi', 'unitig_37.g12681' => 'ugi', 'unitig_8.g3290' => 'ugi', 'vmacro03278' => 'vma', 'vmacro12197' => 'vma', 'vmacro14478' => 'vma', 'vmacro15787' => 'vma', 'vmacro15789' => 'vma', 'vmacro15790' => 'vma', 'vmacro15806' => 'vma', 'vmacro22907' => 'vma', 'vmacro22908' => 'vma', 'vmacro22909' => 'vma', 'vmacro23108' => 'vma', 'VMungo0540G0540' => 'vmu', 'VMungo0540G2468' => 'vmu', 'VMungo1080G0390' => 'vmu', 'VMungo1080G1165' => 'vmu', 'VMungo1127G0170' => 'vmu', 'VMungo1127G2099' => 'vmu', 'VMungo1215G3013' => 'vmu', 'Zm00001eb013110' => 'zma', 'Zm00001eb084260' => 'zma', 'Zm00001eb096110' => 'zma', 'Zm00001eb217510' => 'zma', 'Zm00001eb322550' => 'zma', 'Zm00001eb390770' => 'zma', 'Zm00001eb397170' => 'zma', 'Zm00001eb404610' => 'zma', 'Zm00001eb421790' => 'zma' ), 'gf_id' => 'HOM05D000911', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000911' ), 'data_identifier' => 'HOM05D000911', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000911', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27780' => 'bna', 'A03p35380' => 'bna', 'A04p21160' => 'bna', 'A05p40570' => 'bna', 'A06p26900' => 'bna', 'A08p33230' => 'bna', 'A09p65960' => 'bna', 'A10p18290' => 'bna', 'Aa31LG1G12990' => 'aar', 'Aa31LG1G2980' => 'aar', 'Aa31LG4G14320' => 'aar', 'Aa31LG7G11800' => 'aar', 'Aa31sc36G50' => 'aar', 'Aa31sc36G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3721' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5459' => 'aag', 'Actinidia03028' => 'ach', 'Actinidia03753' => 'ach', 'Actinidia04187' => 'ach', 'Actinidia05509' => 'ach', 'Actinidia24180' => 'ach', 'Actinidia26906' => 'ach', 'Actinidia37097' => 'ach', 'Actinidia38249' => 'ach', 'Ah.01g003470' => 'amhyb', 'Ah.01g004580' => 'amhyb', 'Ah.01g014850' => 'amhyb', 'Ah.01g016830' => 'amhyb', 'Ah.14g088000' => 'amhyb', 'AL1G22980' => 'aly', 'AL3G18990' => 'aly', 'AL4G22440' => 'aly', 'AL4G33180' => 'aly', 'AL5G22920' => 'aly', 'AL6G33660' => 'aly', 'AL8G20720' => 'aly', 'Aqoxy1G00935' => 'aox', 'Aqoxy1G02094' => 'aox', 'Aqoxy2G01239' => 'aox', 'Aqoxy4G01870' => 'aox', 'Aqoxy7G00450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.36ZVTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71EM27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5D6C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH3WRE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3NCM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RIM768' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YB5YRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z36GDV' => 'arhy', 'AT1G08250' => 'ath', 'AT1G11790' => 'ath', 'AT2G27820' => 'ath', 'AT3G07630' => 'ath', 'AT3G44720' => 'ath', 'AT5G22630' => 'ath', 'ATR0693G304' => 'atr', 'ATR0794G109' => 'atr', 'ATR0820G120' => 'atr', 'ATR1159G064' => 'atr', 'Atru.chr10.2239' => 'acertr', 'Atru.chr3.3371' => 'acertr', 'Atru.chr6.3202' => 'acertr', 'AUR62006499' => 'cqu', 'AUR62012718' => 'cqu', 'AUR62021938' => 'cqu', 'AUR62023932' => 'cqu', 'AUR62025034' => 'cqu', 'AUR62025035' => 'cqu', 'AUR62038307' => 'cqu', 'AUR62043466' => 'cqu', 'BcaB02g10748' => 'bca', 'BcaB03g13231' => 'bca', 'BcaB03g14689' => 'bca', 'BcaB05g22716' => 'bca', 'BcaB06g28172' => 'bca', 'BcaB08g36413' => 'bca', 'BcaC01g02186' => 'bca', 'BcaC01g04272' => 'bca', 'BcaC02g08080' => 'bca', 'BcaC02g08227' => 'bca', 'BcaC03g13901' => 'bca', 'BcaC04g19593' => 'bca', 'BcaC04g20874' => 'bca', 'BcaC05g29557' => 'bca', 'BcaC06g35505' => 'bca', 'BcaC07g41954' => 'bca', 'BcaC07g41955' => 'bca', 'BcaC07g41956' => 'bca', 'BcaC07g42519' => 'bca', 'BcaC07g42520' => 'bca', 'BcaC07g42523' => 'bca', 'BcaC07g42524' => 'bca', 'BcaC07g42525' => 'bca', 'BcaC08g47480' => 'bca', 'BcaC08g47481' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00530' => 'bna', 'BolC2t07178H' => 'bol', 'BolC3t16567H' => 'bol', 'BolC4t27234H' => 'bol', 'BolC5t29728H' => 'bol', 'BolC5t34622H' => 'bol', 'BolC6t40321H' => 'bol', 'BolC7t42028H' => 'bol', 'BolC8t49125H' => 'bol', 'BolC8t52538H' => 'bol', 'BolC8t52539H' => 'bol', 'BolC9t56681H' => 'bol', 'BolC9t58266H' => 'bol', 'BolSC21t60294H' => 'bol', 'BraA02t05670Z' => 'bra', 'BraA03t12716Z' => 'bra', 'BraA04t17685Z' => 'bra', 'BraA05t22788Z' => 'bra', 'BraA06t24032Z' => 'bra', 'BraA06t25625Z' => 'bra', 'BraA07t27930Z' => 'bra', 'BraA08t35242Z' => 'bra', 'BraA09t38609Z' => 'bra', 'BraA10t43905Z' => 'bra', 'C02p11060' => 'bna', 'C03p42990' => 'bna', 'C03p67310' => 'bna', 'C04p56990' => 'bna', 'C04p58660' => 'bna', 'C05p09890' => 'bna', 'C05p59680' => 'bna', 'C06p19830' => 'bna', 'C06p53040' => 'bna', 'C07p15230' => 'bna', 'C08p50070' => 'bna', 'C08p50090' => 'bna', 'C09p38330' => 'bna', 'C09p53940' => 'bna', 'CAN.G1014.1' => 'can', 'CAN.G644.30' => 'can', 'CAN.G84.47' => 'can', 'CAN.G919.8' => 'can', 'CANSAT54G0113' => 'cansat', 'CANSAT54G1286' => 'cansat', 'CANSAT64G1020' => 'cansat', 'CARHR008080' => 'chi', 'CARHR008090' => 'chi', 'CARHR012130' => 'chi', 'CARHR038390' => 'chi', 'CARHR082330' => 'chi', 'CARHR120520' => 'chi', 'CARHR151470' => 'chi', 'CARHR190950' => 'chi', 'Carub.0001s0760' => 'cru', 'Carub.0001s1146' => 'cru', 'Carub.0003s0721' => 'cru', 'Carub.0004s0858' => 'cru', 'Carub.0005s1040' => 'cru', 'Carub.0006s2035' => 'cru', 'Carub.0015s0005' => 'cru', 'Ca_01607_v3' => 'car', 'Ca_01677_v3' => 'car', 'Ca_06087_v3' => 'car', 'Ca_19238_v3' => 'car', 'Ca_19373_v3' => 'car', 'Ca_21079_v3' => 'car', 'CBR_g54016' => 'cbr', 'CBR_g54018' => 'cbr', 'CBR_g54020' => 'cbr', 'Cc01_g09780' => 'ccan', 'Cc01_g11680' => 'ccan', 'Cc02_g15610' => 'ccan', 'Cc05_g04350' => 'ccan', 'Cc09_g01580' => 'ccan', 'CDE01G0795' => 'cde', 'CDE02G2024' => 'cde', 'CDE02G2260' => 'cde', 'CDE02G4561' => 'cde', 'CDE05G2733' => 'cde', 'CDE05G3422' => 'cde', 'CDE06G2003' => 'cde', 'CDE08G0576' => 'cde', 'CDE09G0048' => 'cde', 'CDE11G0805' => 'cde', 'Cfa003644' => 'cfa', 'Cfa006290' => 'cfa', 'Cfa010080' => 'cfa', 'Cfa011376' => 'cfa', 'Cfa011576' => 'cfa', 'Cfa011577' => 'cfa', 'Cfa014389' => 'cfa', 'Ciclev10006044m.g' => 'ccl', 'Ciclev10006954m.g' => 'ccl', 'Ciclev10015131m.g' => 'ccl', 'Ciclev10015580m.g' => 'ccl', 'Ciclev10028359m.g' => 'ccl', 'Ciclev10028573m.g' => 'ccl', 'CiPaw.03G159300' => 'cil', 'CiPaw.04G115100' => 'cil', 'CiPaw.09G092800' => 'cil', 'CiPaw.10G071800' => 'cil', 'CiPaw.13G105800' => 'cil', 'CiPaw.13G141000' => 'cil', 'CiPaw.14G103400' => 'cil', 'ClCG01G012700' => 'cla', 'ClCG01G012720' => 'cla', 'ClCG01G021920' => 'cla', 'ClCG02G008870' => 'cla', 'ClCG02G020840' => 'cla', 'ClCG02G021930' => 'cla', 'COL.COLO4_19302' => 'col', 'COL.COLO4_25262' => 'col', 'COL.COLO4_31788' => 'col', 'Cpa.g.c34684' => 'cpa', 'Cpa.g.c36520.1' => 'cpa', 'Cpa.g.c45626' => 'cpa', 'Cpa.g.sc121.17' => 'cpa', 'Cpa.g.sc13.22' => 'cpa', 'Cpa.g.sc87.88' => 'cpa', 'Cre06.g261800' => 'cre', 'CsaV3_1G014500' => 'csa', 'CsaV3_1G014510' => 'csa', 'CsaV3_2G034880' => 'csa', 'CsaV3_6G014760' => 'csa', 'CsaV3_6G021500' => 'csa', 'CsaV3_6G048980' => 'csa', 'CSS0002511' => 'camsi', 'CSS0007556' => 'camsi', 'CSS0008532' => 'camsi', 'CSS0009709' => 'camsi', 'CSS0010486' => 'camsi', 'CSS0016768' => 'camsi', 'CSS0023512' => 'camsi', 'CSS0025341' => 'camsi', 'CSS0027999' => 'camsi', 'CSS0028944' => 'camsi', 'CSS0032292' => 'camsi', 'CSS0032464' => 'camsi', 'CSS0037153' => 'camsi', 'CSS0039256' => 'camsi', 'CSS0048392' => 'camsi', 'CSS0050458' => 'camsi', 'DCAR_004224' => 'dca', 'DCAR_006147' => 'dca', 'DCAR_006465' => 'dca', 'DCAR_008159' => 'dca', 'DCAR_012164' => 'dca', 'DCAR_019764' => 'dca', 'Dinv05418' => 'din', 'Dinv10839' => 'din', 'Dinv12521' => 'din', 'Dinv13900' => 'din', 'Dinv29426' => 'din', 'Duzib150G0263' => 'dzi', 'Duzib168G1178' => 'dzi', 'Duzib168G1924' => 'dzi', 'Duzib170G0299' => 'dzi', 'Duzib170G0813' => 'dzi', 'Duzib235G1128' => 'dzi', 'Duzib248G1060' => 'dzi', 'ECA232G1910' => 'eca', 'ECA233G4621' => 'eca', 'ECA238G1216' => 'eca', 'ECA238G1784' => 'eca', 'ECA248G1242' => 'eca', 'EL10Ac8g20071' => 'bvu', 'EL10Ac9g21086' => 'bvu', 'EL10Ac9g22407' => 'bvu', 'EL10Ac9g22412' => 'bvu', 'Eucgr.A01119' => 'egr', 'Eucgr.E04043' => 'egr', 'Eucgr.J00428' => 'egr', 'Eucgr.J00958' => 'egr', 'FAN11G3091' => 'fan', 'FAN11G3651' => 'fan', 'FAN16G2566' => 'fan', 'FAN21G3155' => 'fan', 'FAN21G3400' => 'fan', 'FAN21G3543' => 'fan', 'FAN25G0234' => 'fan', 'FAN25G1422' => 'fan', 'FAN25G3392' => 'fan', 'FvH4_3g01940' => 'fve', 'FvH4_3g29870' => 'fve', 'FvH4_3g33680' => 'fve', 'Glyma.09G004200' => 'gma', 'Glyma.11G151288' => 'gma', 'Glyma.11G189100' => 'gma', 'Glyma.12G072500' => 'gma', 'Glyma.12G085500' => 'gma', 'Glyma.12G181800' => 'gma', 'Glyma.12G193000' => 'gma', 'Glyma.13G309300' => 'gma', 'Glyma.13G319000' => 'gma', 'Glyma.17G012600' => 'gma', 'Gohir.A06G148600' => 'ghi', 'Gohir.A07G115800' => 'ghi', 'Gohir.A08G003600' => 'ghi', 'Gohir.A09G093300' => 'ghi', 'Gohir.A09G105400' => 'ghi', 'Gohir.A09G105500' => 'ghi', 'Gohir.D06G154600' => 'ghi', 'Gohir.D07G120200' => 'ghi', 'Gohir.D08G013900' => 'ghi', 'Gohir.D09G093100' => 'ghi', 'Gohir.D09G102200' => 'ghi', 'Gohir.D09G102300' => 'ghi', 'Gorai.001G129400' => 'gra', 'Gorai.004G008200' => 'gra', 'Gorai.006G109800' => 'gra', 'Gorai.006G119500' => 'gra', 'Gorai.006G121300' => 'gra', 'Gorai.010G180700' => 'gra', 'GSVIVG01012716001' => 'vvi', 'GSVIVG01025118001' => 'vvi', 'GSVIVG01030439001' => 'vvi', 'GSVIVG01031397001' => 'vvi', 'HanXRQChr01g0004201' => 'han', 'HanXRQChr02g0054941' => 'han', 'HanXRQChr05g0141811' => 'han', 'HanXRQChr07g0197751' => 'han', 'HanXRQChr11g0346691' => 'han', 'HanXRQChr13g0396971' => 'han', 'HanXRQChr14g0432951' => 'han', 'HanXRQChr14g0452001' => 'han', 'HanXRQChr15g0496681' => 'han', 'HanXRQChr17g0557491' => 'han', 'HanXRQChr17g0557501' => 'han', 'Haze_06809' => 'cav', 'Haze_12852' => 'cav', 'Haze_15850' => 'cav', 'Haze_23446' => 'cav', 'Haze_23942' => 'cav', 'Haze_23943' => 'cav', 'Hma1.2p1_0091F.1_g046450' => 'hma', 'Hma1.2p1_0128F.1_g059910' => 'hma', 'Hma1.2p1_0249F.1_g102260' => 'hma', 'Hma1.2p1_0453F.1_g156190' => 'hma', 'Hma1.2p1_0695F.1_g204380' => 'hma', 'Hma1.2p1_0749F.1_g212650' => 'hma', 'Hma1.2p1_2156F.1_g315420' => 'hma', 'Hma1.2p1_2686F.1_g326940' => 'hma', 'HPP92_006428' => 'vpl', 'HPP92_012069' => 'vpl', 'HPP92_014129' => 'vpl', 'HPP92_014133' => 'vpl', 'HPP92_017315' => 'vpl', 'HPP92_026445' => 'vpl', 'HPP92_026446' => 'vpl', 'Hund00774' => 'sun', 'Hund07682' => 'sun', 'Hund21413' => 'sun', 'Hund23462' => 'sun', 'Hund23463' => 'sun', 'Lalb_Chr03g0027911' => 'lal', 'Lalb_Chr13g0304271' => 'lal', 'Lalb_Chr19g0137471' => 'lal', 'Lalb_Chr22g0350651' => 'lal', 'Lalb_Chr24g0395151' => 'lal', 'Lj1A1231T40' => 'lonja', 'Lj1A221T48' => 'lonja', 'Lj1C924T12' => 'lonja', 'Lj2C993G6' => 'lonja', 'Lj3g0005790' => 'lja', 'Lj3g0015432' => 'lja', 'Lj3g0017722' => 'lja', 'Lj3g0018497' => 'lja', 'Lj4g0025071' => 'lja', 'Lsat_1_v5_gn_1_129680' => 'lsa', 'Lsat_1_v5_gn_2_25321' => 'lsa', 'Lsat_1_v5_gn_2_95461' => 'lsa', 'Lsat_1_v5_gn_4_159620' => 'lsa', 'Lsat_1_v5_gn_6_41301' => 'lsa', 'Lsat_1_v5_gn_6_74660' => 'lsa', 'Lsat_1_v5_gn_7_11520' => 'lsa', 'Lsat_1_v5_gn_9_67680' => 'lsa', 'Manes.04G008300' => 'mes', 'Manes.04G008400' => 'mes', 'Manes.04G026500' => 'mes', 'Manes.10G135300' => 'mes', 'Manes.11G157300' => 'mes', 'Manes.12G074000' => 'mes', 'Manes.16G006200' => 'mes', 'Manes.17G026400' => 'mes', 'Mapoly0024s0086' => 'mpo', 'Mapoly0024s0087' => 'mpo', 'Mapoly0071s0057' => 'mpo', 'Mapoly0204s0012' => 'mpo', 'MBI04_g37681_MAGBIO' => 'mbi', 'MBI05_g17779_MAGBIO' => 'mbi', 'MBI12_g31184_MAGBIO' => 'mbi', 'MBI17_g11083_MAGBIO' => 'mbi', 'MBI18_g03883_MAGBIO' => 'mbi', 'MBI18_g28940_MAGBIO' => 'mbi', 'MCO01G690' => 'mco', 'MD03G1109900' => 'mdo', 'MD03G1134800' => 'mdo', 'MD05G1348000' => 'mdo', 'MD10G1322400' => 'mdo', 'MD11G1123300' => 'mdo', 'MD11G1157600' => 'mdo', 'Medtr2g084875' => 'mtr', 'Medtr2g088130' => 'mtr', 'Medtr4g055310' => 'mtr', 'Medtr4g061070' => 'mtr', 'Medtr4g132250' => 'mtr', 'MELO3C004795.2' => 'cme', 'MELO3C004797.2' => 'cme', 'MELO3C007396.2' => 'cme', 'MELO3C019277.2' => 'cme', 'MELO3C021449.2' => 'cme', 'MELO3C025736.2' => 'cme', 'Migut.D02175' => 'egut', 'Migut.H01573' => 'egut', 'Migut.M01327' => 'egut', 'Migut.N02513' => 'egut', 'MSTRG.14638' => 'ama', 'MSTRG.18632' => 'ama', 'MSTRG.7203' => 'ama', 'Nitab4.5_0000533g0140' => 'nta', 'Nitab4.5_0000888g0150' => 'nta', 'Nitab4.5_0001453g0040' => 'nta', 'Nitab4.5_0002827g0090' => 'nta', 'Nitab4.5_0003082g0040' => 'nta', 'Nitab4.5_0007799g0040' => 'nta', 'Nitab4.5_0008983g0010' => 'nta', 'Nitab4.5_0009017g0020' => 'nta', 'Nn1g02132' => 'nnu', 'Nn1g03492' => 'nnu', 'Nn1g03493' => 'nnu', 'Nn1g03494' => 'nnu', 'Nn1g07164' => 'nnu', 'Nn1g07291' => 'nnu', 'Nn2g10655' => 'nnu', 'Nn2g11652' => 'nnu', 'Nn2g14008' => 'nnu', 'Nn3g17476' => 'nnu', 'Nn3g17477' => 'nnu', 'Nn4g22370' => 'nnu', 'Nn4g25255' => 'nnu', 'Nn5g27755' => 'nnu', 'Nn6g34260' => 'nnu', 'Nn6g35041' => 'nnu', 'Oeu005924.1' => 'oeu', 'Oeu008383.1' => 'oeu', 'Oeu014928.1' => 'oeu', 'Oeu019889.1' => 'oeu', 'Oeu022271.1' => 'oeu', 'Oeu025271.1' => 'oeu', 'Oeu036302.1' => 'oeu', 'Oeu044100.1' => 'oeu', 'Os01g0528300' => 'osa', 'Os03g0286200' => 'osa', 'Os04g0406600' => 'osa', 'Os07g0512000' => 'osa', 'Os07g0694600' => 'osa', 'Os08g0411000' => 'osa', 'Os09g0565700' => 'osa', 'Os09g0566050' => 'osa', 'Os10g0523700' => 'osa', 'Peaxi162Scf00002g00514' => 'pax', 'Peaxi162Scf00047g01817' => 'pax', 'Peaxi162Scf00114g00001' => 'pax', 'Peaxi162Scf00147g00613' => 'pax', 'Peaxi162Scf00389g00425' => 'pax', 'PGR042G1139' => 'pgr', 'PGR042G3273' => 'pgr', 'PGR102G2180' => 'pgr', 'PGR119G0234' => 'pgr', 'PGR119G0668' => 'pgr', 'PGSC0003DMG400007122' => 'stu', 'PGSC0003DMG400016478' => 'stu', 'PGSC0003DMG400025374' => 'stu', 'PGSC0003DMG400026536' => 'stu', 'Phvul.003G079600' => 'pvu', 'Phvul.005G115600' => 'pvu', 'Phvul.005G127100' => 'pvu', 'Phvul.006G149500' => 'pvu', 'Phvul.006G149600' => 'pvu', 'Phvul.011G071800' => 'pvu', 'Phvul.011G090400' => 'pvu', 'Potri.004G013400' => 'ptr', 'Potri.004G188100' => 'ptr', 'Potri.008G195500' => 'ptr', 'Potri.009G148800' => 'ptr', 'Potri.011G004700' => 'ptr', 'Pp3c17_22810' => 'ppa', 'Pp3c18_4480' => 'ppa', 'Pp3c19_13030' => 'ppa', 'Pp3c1_33620' => 'ppa', 'Pp3c2_9380' => 'ppa', 'PRCOL_00001023' => 'pco', 'Prupe.3G216300' => 'ppe', 'Prupe.4G019500' => 'ppe', 'Prupe.6G092500' => 'ppe', 'Prupe.6G119200' => 'ppe', 'Psat0s1945g0080' => 'psa', 'Psat0s4167g0040' => 'psa', 'Psat1g185800' => 'psa', 'Psat4g006440' => 'psa', 'Psat4g006480' => 'psa', 'Psat4g168120' => 'psa', 'Psat5g255680' => 'psa', 'Psat5g261760' => 'psa', 'Psat7g222120' => 'psa', 'PSO063G7252' => 'pso', 'PSO170G4778' => 'pso', 'PSO210G2249' => 'pso', 'PSO339G2411' => 'pso', 'PSO339G2457' => 'pso', 'PSO339G2854' => 'pso', 'PSO339G4288' => 'pso', 'PSO339G4615' => 'pso', 'PSO384G2796' => 'pso', 'PSO384G2940' => 'pso', 'PSO384G4227' => 'pso', 'PSO478G1425' => 'pso', 'PSO541G3863' => 'pso', 'PSO675G0507' => 'pso', 'PSO782G0338' => 'pso', 'PSO832G0644' => 'pso', 'QL01p013664' => 'qlo', 'QL01p036598' => 'qlo', 'QL05p072984' => 'qlo', 'QL08p005768' => 'qlo', 'QL08p032743' => 'qlo', 'QL93p0073_0439' => 'qlo', 'QL93p0073_0444' => 'qlo', 'RcHm_v2.0_Chr5g0002851' => 'rch', 'RcHm_v2.0_Chr5g0055201' => 'rch', 'RcHm_v2.0_Chr5g0061191' => 'rch', 'RcHm_v2.0_Chr7g0203231' => 'rch', 'Rhsim01G0208100' => 'rsi', 'Rhsim01G0208200' => 'rsi', 'Rhsim02G0106500' => 'rsi', 'Rhsim03G0107900' => 'rsi', 'Rhsim06G0163400' => 'rsi', 'Rhsim13G0105200' => 'rsi', 'Sabra04G0006300' => 'sbr', 'Sabra04G0127000' => 'sbr', 'Sabra08G0148700' => 'sbr', 'Sabra09G0117400' => 'sbr', 'SalBow1G3326' => 'sbo', 'SalBow3G3228' => 'sbo', 'SalBow6G1634' => 'sbo', 'SalBow6G3603' => 'sbo', 'SalBow6G5266' => 'sbo', 'SalBow7G2265' => 'sbo', 'SalBow8G0850' => 'sbo', 'SalBow8G2592' => 'sbo', 'Sc05g0009240' => 'sci', 'Sc12g0002300' => 'sci', 'Sc21g0000100' => 'sci', 'Sc21g0004720' => 'sci', 'Sed0002949' => 'sed', 'Sed0004114' => 'sed', 'Sed0004306' => 'sed', 'Sed0006172' => 'sed', 'Sed0008413' => 'sed', 'Sed0013809' => 'sed', 'Sed0019556' => 'sed', 'SEGI_03570' => 'sgi', 'SEGI_07859' => 'sgi', 'SEGI_15042' => 'sgi', 'SEGI_16263' => 'sgi', 'SEGI_16552' => 'sgi', 'SEGI_24331' => 'sgi', 'SEGI_27316' => 'sgi', 'SEGI_29521' => 'sgi', 'SEGI_41342' => 'sgi', 'SGA_v2.0_scaffold27G11617' => 'sas', 'SGA_v2.0_scaffold316G48428' => 'sas', 'SGA_v2.0_scaffold49G18261' => 'sas', 'SGA_v2.0_scaffold7G03831' => 'sas', 'SGA_v2.0_scaffold93G28359' => 'sas', 'SHI02210' => 'shi', 'SHI06028' => 'shi', 'SHI06321' => 'shi', 'SMO111G0012' => 'smo', 'SMO228G0080' => 'smo', 'SMO356G0756' => 'smo', 'Solyc02g080620.3' => 'sly', 'Solyc06g074530.1' => 'sly', 'Solyc11g066890.1' => 'sly', 'Solyc11g072520.3' => 'sly', 'Sopen02g025330' => 'spe', 'Sopen06g031000' => 'spe', 'Sopen09g008240' => 'spe', 'Sopen09g025210' => 'spe', 'Sopen11g026600' => 'spe', 'Sopen11g030170' => 'spe', 'Sp1g10420' => 'spa', 'Sp3g06570' => 'spa', 'Sp4g10660' => 'spa', 'Sp5g16460' => 'spa', 'Sp6g22710' => 'spa', 'TAR365G0112' => 'tar', 'TAR369G0717' => 'tar', 'TAR374G0976' => 'tar', 'TAR623G1128' => 'tar', 'TAR626G1937' => 'tar', 'TAR627G0123' => 'tar', 'TAR628G0305' => 'tar', 'TAR636G1176' => 'tar', 'TAR636G2442' => 'tar', 'THA.LOC104800556' => 'tha', 'THA.LOC104809501' => 'tha', 'THA.LOC104815126' => 'tha', 'THA.LOC104815732' => 'tha', 'THA.LOC104823528' => 'tha', 'Thecc.02G365600' => 'tca', 'Thecc.06G222300' => 'tca', 'Thecc.09G261800' => 'tca', 'Thecc.09G291400' => 'tca', 'Thhalv10003028m.g' => 'esa', 'Thhalv10007886m.g' => 'esa', 'Thhalv10016085m.g' => 'esa', 'Thhalv10016681m.g' => 'esa', 'Thhalv10020951m.g' => 'esa', 'TPR.G15598' => 'tpr', 'TPR.G29305' => 'tpr', 'TPR.G32395' => 'tpr', 'TPR.G36998' => 'tpr', 'TPR.G4227' => 'tpr', 'TWI18G1433' => 'twi', 'TWI31G0755' => 'twi', 'TWI38G0912' => 'twi', 'TWI75G1097' => 'twi', 'TWI75G1619' => 'twi', 'TWI79G1336' => 'twi', 'unitig_0.g943' => 'ugi', 'unitig_0.g944' => 'ugi', 'unitig_22.g6646' => 'ugi', 'unitig_37.g12681' => 'ugi', 'unitig_8.g3290' => 'ugi', 'vmacro03278' => 'vma', 'vmacro12197' => 'vma', 'vmacro14478' => 'vma', 'vmacro15787' => 'vma', 'vmacro15789' => 'vma', 'vmacro15790' => 'vma', 'vmacro15806' => 'vma', 'vmacro22907' => 'vma', 'vmacro22908' => 'vma', 'vmacro22909' => 'vma', 'vmacro23108' => 'vma', 'VMungo0540G0540' => 'vmu', 'VMungo0540G2468' => 'vmu', 'VMungo1080G0390' => 'vmu', 'VMungo1080G1165' => 'vmu', 'VMungo1127G0170' => 'vmu', 'VMungo1127G2099' => 'vmu', 'VMungo1215G3013' => 'vmu', 'Zm00001eb013110' => 'zma', 'Zm00001eb084260' => 'zma', 'Zm00001eb096110' => 'zma', 'Zm00001eb217510' => 'zma', 'Zm00001eb322550' => 'zma', 'Zm00001eb390770' => 'zma', 'Zm00001eb397170' => 'zma', 'Zm00001eb404610' => 'zma', 'Zm00001eb421790' => 'zma' ) $gf_id = 'HOM05D000911' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000911' ) $data_identifier = 'HOM05D000911' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 16, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 5, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 6, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 8, 'nnu' => (int) 16, 'oeu' => (int) 8, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 5, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 16, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421790' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000911', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27780' => 'bna', 'A03p35380' => 'bna', 'A04p21160' => 'bna', 'A05p40570' => 'bna', 'A06p26900' => 'bna', 'A08p33230' => 'bna', 'A09p65960' => 'bna', 'A10p18290' => 'bna', 'Aa31LG1G12990' => 'aar', 'Aa31LG1G2980' => 'aar', 'Aa31LG4G14320' => 'aar', 'Aa31LG7G11800' => 'aar', 'Aa31sc36G50' => 'aar', 'Aa31sc36G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3721' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5459' => 'aag', 'Actinidia03028' => 'ach', 'Actinidia03753' => 'ach', 'Actinidia04187' => 'ach', 'Actinidia05509' => 'ach', 'Actinidia24180' => 'ach', 'Actinidia26906' => 'ach', 'Actinidia37097' => 'ach', 'Actinidia38249' => 'ach', 'Ah.01g003470' => 'amhyb', 'Ah.01g004580' => 'amhyb', 'Ah.01g014850' => 'amhyb', 'Ah.01g016830' => 'amhyb', 'Ah.14g088000' => 'amhyb', 'AL1G22980' => 'aly', 'AL3G18990' => 'aly', 'AL4G22440' => 'aly', 'AL4G33180' => 'aly', 'AL5G22920' => 'aly', 'AL6G33660' => 'aly', 'AL8G20720' => 'aly', 'Aqoxy1G00935' => 'aox', 'Aqoxy1G02094' => 'aox', 'Aqoxy2G01239' => 'aox', 'Aqoxy4G01870' => 'aox', 'Aqoxy7G00450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.36ZVTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71EM27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5D6C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH3WRE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3NCM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RIM768' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YB5YRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z36GDV' => 'arhy', 'AT1G08250' => 'ath', 'AT1G11790' => 'ath', 'AT2G27820' => 'ath', 'AT3G07630' => 'ath', 'AT3G44720' => 'ath', 'AT5G22630' => 'ath', 'ATR0693G304' => 'atr', 'ATR0794G109' => 'atr', 'ATR0820G120' => 'atr', 'ATR1159G064' => 'atr', 'Atru.chr10.2239' => 'acertr', 'Atru.chr3.3371' => 'acertr', 'Atru.chr6.3202' => 'acertr', 'AUR62006499' => 'cqu', 'AUR62012718' => 'cqu', 'AUR62021938' => 'cqu', 'AUR62023932' => 'cqu', 'AUR62025034' => 'cqu', 'AUR62025035' => 'cqu', 'AUR62038307' => 'cqu', 'AUR62043466' => 'cqu', 'BcaB02g10748' => 'bca', 'BcaB03g13231' => 'bca', 'BcaB03g14689' => 'bca', 'BcaB05g22716' => 'bca', 'BcaB06g28172' => 'bca', 'BcaB08g36413' => 'bca', 'BcaC01g02186' => 'bca', 'BcaC01g04272' => 'bca', 'BcaC02g08080' => 'bca', 'BcaC02g08227' => 'bca', 'BcaC03g13901' => 'bca', 'BcaC04g19593' => 'bca', 'BcaC04g20874' => 'bca', 'BcaC05g29557' => 'bca', 'BcaC06g35505' => 'bca', 'BcaC07g41954' => 'bca', 'BcaC07g41955' => 'bca', 'BcaC07g41956' => 'bca', 'BcaC07g42519' => 'bca', 'BcaC07g42520' => 'bca', 'BcaC07g42523' => 'bca', 'BcaC07g42524' => 'bca', 'BcaC07g42525' => 'bca', 'BcaC08g47480' => 'bca', 'BcaC08g47481' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00530' => 'bna', 'BolC2t07178H' => 'bol', 'BolC3t16567H' => 'bol', 'BolC4t27234H' => 'bol', 'BolC5t29728H' => 'bol', 'BolC5t34622H' => 'bol', 'BolC6t40321H' => 'bol', 'BolC7t42028H' => 'bol', 'BolC8t49125H' => 'bol', 'BolC8t52538H' => 'bol', 'BolC8t52539H' => 'bol', 'BolC9t56681H' => 'bol', 'BolC9t58266H' => 'bol', 'BolSC21t60294H' => 'bol', 'BraA02t05670Z' => 'bra', 'BraA03t12716Z' => 'bra', 'BraA04t17685Z' => 'bra', 'BraA05t22788Z' => 'bra', 'BraA06t24032Z' => 'bra', 'BraA06t25625Z' => 'bra', 'BraA07t27930Z' => 'bra', 'BraA08t35242Z' => 'bra', 'BraA09t38609Z' => 'bra', 'BraA10t43905Z' => 'bra', 'C02p11060' => 'bna', 'C03p42990' => 'bna', 'C03p67310' => 'bna', 'C04p56990' => 'bna', 'C04p58660' => 'bna', 'C05p09890' => 'bna', 'C05p59680' => 'bna', 'C06p19830' => 'bna', 'C06p53040' => 'bna', 'C07p15230' => 'bna', 'C08p50070' => 'bna', 'C08p50090' => 'bna', 'C09p38330' => 'bna', 'C09p53940' => 'bna', 'CAN.G1014.1' => 'can', 'CAN.G644.30' => 'can', 'CAN.G84.47' => 'can', 'CAN.G919.8' => 'can', 'CANSAT54G0113' => 'cansat', 'CANSAT54G1286' => 'cansat', 'CANSAT64G1020' => 'cansat', 'CARHR008080' => 'chi', 'CARHR008090' => 'chi', 'CARHR012130' => 'chi', 'CARHR038390' => 'chi', 'CARHR082330' => 'chi', 'CARHR120520' => 'chi', 'CARHR151470' => 'chi', 'CARHR190950' => 'chi', 'Carub.0001s0760' => 'cru', 'Carub.0001s1146' => 'cru', 'Carub.0003s0721' => 'cru', 'Carub.0004s0858' => 'cru', 'Carub.0005s1040' => 'cru', 'Carub.0006s2035' => 'cru', 'Carub.0015s0005' => 'cru', 'Ca_01607_v3' => 'car', 'Ca_01677_v3' => 'car', 'Ca_06087_v3' => 'car', 'Ca_19238_v3' => 'car', 'Ca_19373_v3' => 'car', 'Ca_21079_v3' => 'car', 'CBR_g54016' => 'cbr', 'CBR_g54018' => 'cbr', 'CBR_g54020' => 'cbr', 'Cc01_g09780' => 'ccan', 'Cc01_g11680' => 'ccan', 'Cc02_g15610' => 'ccan', 'Cc05_g04350' => 'ccan', 'Cc09_g01580' => 'ccan', 'CDE01G0795' => 'cde', 'CDE02G2024' => 'cde', 'CDE02G2260' => 'cde', 'CDE02G4561' => 'cde', 'CDE05G2733' => 'cde', 'CDE05G3422' => 'cde', 'CDE06G2003' => 'cde', 'CDE08G0576' => 'cde', 'CDE09G0048' => 'cde', 'CDE11G0805' => 'cde', 'Cfa003644' => 'cfa', 'Cfa006290' => 'cfa', 'Cfa010080' => 'cfa', 'Cfa011376' => 'cfa', 'Cfa011576' => 'cfa', 'Cfa011577' => 'cfa', 'Cfa014389' => 'cfa', 'Ciclev10006044m.g' => 'ccl', 'Ciclev10006954m.g' => 'ccl', 'Ciclev10015131m.g' => 'ccl', 'Ciclev10015580m.g' => 'ccl', 'Ciclev10028359m.g' => 'ccl', 'Ciclev10028573m.g' => 'ccl', 'CiPaw.03G159300' => 'cil', 'CiPaw.04G115100' => 'cil', 'CiPaw.09G092800' => 'cil', 'CiPaw.10G071800' => 'cil', 'CiPaw.13G105800' => 'cil', 'CiPaw.13G141000' => 'cil', 'CiPaw.14G103400' => 'cil', 'ClCG01G012700' => 'cla', 'ClCG01G012720' => 'cla', 'ClCG01G021920' => 'cla', 'ClCG02G008870' => 'cla', 'ClCG02G020840' => 'cla', 'ClCG02G021930' => 'cla', 'COL.COLO4_19302' => 'col', 'COL.COLO4_25262' => 'col', 'COL.COLO4_31788' => 'col', 'Cpa.g.c34684' => 'cpa', 'Cpa.g.c36520.1' => 'cpa', 'Cpa.g.c45626' => 'cpa', 'Cpa.g.sc121.17' => 'cpa', 'Cpa.g.sc13.22' => 'cpa', 'Cpa.g.sc87.88' => 'cpa', 'Cre06.g261800' => 'cre', 'CsaV3_1G014500' => 'csa', 'CsaV3_1G014510' => 'csa', 'CsaV3_2G034880' => 'csa', 'CsaV3_6G014760' => 'csa', 'CsaV3_6G021500' => 'csa', 'CsaV3_6G048980' => 'csa', 'CSS0002511' => 'camsi', 'CSS0007556' => 'camsi', 'CSS0008532' => 'camsi', 'CSS0009709' => 'camsi', 'CSS0010486' => 'camsi', 'CSS0016768' => 'camsi', 'CSS0023512' => 'camsi', 'CSS0025341' => 'camsi', 'CSS0027999' => 'camsi', 'CSS0028944' => 'camsi', 'CSS0032292' => 'camsi', 'CSS0032464' => 'camsi', 'CSS0037153' => 'camsi', 'CSS0039256' => 'camsi', 'CSS0048392' => 'camsi', 'CSS0050458' => 'camsi', 'DCAR_004224' => 'dca', 'DCAR_006147' => 'dca', 'DCAR_006465' => 'dca', 'DCAR_008159' => 'dca', 'DCAR_012164' => 'dca', 'DCAR_019764' => 'dca', 'Dinv05418' => 'din', 'Dinv10839' => 'din', 'Dinv12521' => 'din', 'Dinv13900' => 'din', 'Dinv29426' => 'din', 'Duzib150G0263' => 'dzi', 'Duzib168G1178' => 'dzi', 'Duzib168G1924' => 'dzi', 'Duzib170G0299' => 'dzi', 'Duzib170G0813' => 'dzi', 'Duzib235G1128' => 'dzi', 'Duzib248G1060' => 'dzi', 'ECA232G1910' => 'eca', 'ECA233G4621' => 'eca', 'ECA238G1216' => 'eca', 'ECA238G1784' => 'eca', 'ECA248G1242' => 'eca', 'EL10Ac8g20071' => 'bvu', 'EL10Ac9g21086' => 'bvu', 'EL10Ac9g22407' => 'bvu', 'EL10Ac9g22412' => 'bvu', 'Eucgr.A01119' => 'egr', 'Eucgr.E04043' => 'egr', 'Eucgr.J00428' => 'egr', 'Eucgr.J00958' => 'egr', 'FAN11G3091' => 'fan', 'FAN11G3651' => 'fan', 'FAN16G2566' => 'fan', 'FAN21G3155' => 'fan', 'FAN21G3400' => 'fan', 'FAN21G3543' => 'fan', 'FAN25G0234' => 'fan', 'FAN25G1422' => 'fan', 'FAN25G3392' => 'fan', 'FvH4_3g01940' => 'fve', 'FvH4_3g29870' => 'fve', 'FvH4_3g33680' => 'fve', 'Glyma.09G004200' => 'gma', 'Glyma.11G151288' => 'gma', 'Glyma.11G189100' => 'gma', 'Glyma.12G072500' => 'gma', 'Glyma.12G085500' => 'gma', 'Glyma.12G181800' => 'gma', 'Glyma.12G193000' => 'gma', 'Glyma.13G309300' => 'gma', 'Glyma.13G319000' => 'gma', 'Glyma.17G012600' => 'gma', 'Gohir.A06G148600' => 'ghi', 'Gohir.A07G115800' => 'ghi', 'Gohir.A08G003600' => 'ghi', 'Gohir.A09G093300' => 'ghi', 'Gohir.A09G105400' => 'ghi', 'Gohir.A09G105500' => 'ghi', 'Gohir.D06G154600' => 'ghi', 'Gohir.D07G120200' => 'ghi', 'Gohir.D08G013900' => 'ghi', 'Gohir.D09G093100' => 'ghi', 'Gohir.D09G102200' => 'ghi', 'Gohir.D09G102300' => 'ghi', 'Gorai.001G129400' => 'gra', 'Gorai.004G008200' => 'gra', 'Gorai.006G109800' => 'gra', 'Gorai.006G119500' => 'gra', 'Gorai.006G121300' => 'gra', 'Gorai.010G180700' => 'gra', 'GSVIVG01012716001' => 'vvi', 'GSVIVG01025118001' => 'vvi', 'GSVIVG01030439001' => 'vvi', 'GSVIVG01031397001' => 'vvi', 'HanXRQChr01g0004201' => 'han', 'HanXRQChr02g0054941' => 'han', 'HanXRQChr05g0141811' => 'han', 'HanXRQChr07g0197751' => 'han', 'HanXRQChr11g0346691' => 'han', 'HanXRQChr13g0396971' => 'han', 'HanXRQChr14g0432951' => 'han', 'HanXRQChr14g0452001' => 'han', 'HanXRQChr15g0496681' => 'han', 'HanXRQChr17g0557491' => 'han', 'HanXRQChr17g0557501' => 'han', 'Haze_06809' => 'cav', 'Haze_12852' => 'cav', 'Haze_15850' => 'cav', 'Haze_23446' => 'cav', 'Haze_23942' => 'cav', 'Haze_23943' => 'cav', 'Hma1.2p1_0091F.1_g046450' => 'hma', 'Hma1.2p1_0128F.1_g059910' => 'hma', 'Hma1.2p1_0249F.1_g102260' => 'hma', 'Hma1.2p1_0453F.1_g156190' => 'hma', 'Hma1.2p1_0695F.1_g204380' => 'hma', 'Hma1.2p1_0749F.1_g212650' => 'hma', 'Hma1.2p1_2156F.1_g315420' => 'hma', 'Hma1.2p1_2686F.1_g326940' => 'hma', 'HPP92_006428' => 'vpl', 'HPP92_012069' => 'vpl', 'HPP92_014129' => 'vpl', 'HPP92_014133' => 'vpl', 'HPP92_017315' => 'vpl', 'HPP92_026445' => 'vpl', 'HPP92_026446' => 'vpl', 'Hund00774' => 'sun', 'Hund07682' => 'sun', 'Hund21413' => 'sun', 'Hund23462' => 'sun', 'Hund23463' => 'sun', 'Lalb_Chr03g0027911' => 'lal', 'Lalb_Chr13g0304271' => 'lal', 'Lalb_Chr19g0137471' => 'lal', 'Lalb_Chr22g0350651' => 'lal', 'Lalb_Chr24g0395151' => 'lal', 'Lj1A1231T40' => 'lonja', 'Lj1A221T48' => 'lonja', 'Lj1C924T12' => 'lonja', 'Lj2C993G6' => 'lonja', 'Lj3g0005790' => 'lja', 'Lj3g0015432' => 'lja', 'Lj3g0017722' => 'lja', 'Lj3g0018497' => 'lja', 'Lj4g0025071' => 'lja', 'Lsat_1_v5_gn_1_129680' => 'lsa', 'Lsat_1_v5_gn_2_25321' => 'lsa', 'Lsat_1_v5_gn_2_95461' => 'lsa', 'Lsat_1_v5_gn_4_159620' => 'lsa', 'Lsat_1_v5_gn_6_41301' => 'lsa', 'Lsat_1_v5_gn_6_74660' => 'lsa', 'Lsat_1_v5_gn_7_11520' => 'lsa', 'Lsat_1_v5_gn_9_67680' => 'lsa', 'Manes.04G008300' => 'mes', 'Manes.04G008400' => 'mes', 'Manes.04G026500' => 'mes', 'Manes.10G135300' => 'mes', 'Manes.11G157300' => 'mes', 'Manes.12G074000' => 'mes', 'Manes.16G006200' => 'mes', 'Manes.17G026400' => 'mes', 'Mapoly0024s0086' => 'mpo', 'Mapoly0024s0087' => 'mpo', 'Mapoly0071s0057' => 'mpo', 'Mapoly0204s0012' => 'mpo', 'MBI04_g37681_MAGBIO' => 'mbi', 'MBI05_g17779_MAGBIO' => 'mbi', 'MBI12_g31184_MAGBIO' => 'mbi', 'MBI17_g11083_MAGBIO' => 'mbi', 'MBI18_g03883_MAGBIO' => 'mbi', 'MBI18_g28940_MAGBIO' => 'mbi', 'MCO01G690' => 'mco', 'MD03G1109900' => 'mdo', 'MD03G1134800' => 'mdo', 'MD05G1348000' => 'mdo', 'MD10G1322400' => 'mdo', 'MD11G1123300' => 'mdo', 'MD11G1157600' => 'mdo', 'Medtr2g084875' => 'mtr', 'Medtr2g088130' => 'mtr', 'Medtr4g055310' => 'mtr', 'Medtr4g061070' => 'mtr', 'Medtr4g132250' => 'mtr', 'MELO3C004795.2' => 'cme', 'MELO3C004797.2' => 'cme', 'MELO3C007396.2' => 'cme', 'MELO3C019277.2' => 'cme', 'MELO3C021449.2' => 'cme', 'MELO3C025736.2' => 'cme', 'Migut.D02175' => 'egut', 'Migut.H01573' => 'egut', 'Migut.M01327' => 'egut', 'Migut.N02513' => 'egut', 'MSTRG.14638' => 'ama', 'MSTRG.18632' => 'ama', 'MSTRG.7203' => 'ama', 'Nitab4.5_0000533g0140' => 'nta', 'Nitab4.5_0000888g0150' => 'nta', 'Nitab4.5_0001453g0040' => 'nta', 'Nitab4.5_0002827g0090' => 'nta', 'Nitab4.5_0003082g0040' => 'nta', 'Nitab4.5_0007799g0040' => 'nta', 'Nitab4.5_0008983g0010' => 'nta', 'Nitab4.5_0009017g0020' => 'nta', 'Nn1g02132' => 'nnu', 'Nn1g03492' => 'nnu', 'Nn1g03493' => 'nnu', 'Nn1g03494' => 'nnu', 'Nn1g07164' => 'nnu', 'Nn1g07291' => 'nnu', 'Nn2g10655' => 'nnu', 'Nn2g11652' => 'nnu', 'Nn2g14008' => 'nnu', 'Nn3g17476' => 'nnu', 'Nn3g17477' => 'nnu', 'Nn4g22370' => 'nnu', 'Nn4g25255' => 'nnu', 'Nn5g27755' => 'nnu', 'Nn6g34260' => 'nnu', 'Nn6g35041' => 'nnu', 'Oeu005924.1' => 'oeu', 'Oeu008383.1' => 'oeu', 'Oeu014928.1' => 'oeu', 'Oeu019889.1' => 'oeu', 'Oeu022271.1' => 'oeu', 'Oeu025271.1' => 'oeu', 'Oeu036302.1' => 'oeu', 'Oeu044100.1' => 'oeu', 'Os01g0528300' => 'osa', 'Os03g0286200' => 'osa', 'Os04g0406600' => 'osa', 'Os07g0512000' => 'osa', 'Os07g0694600' => 'osa', 'Os08g0411000' => 'osa', 'Os09g0565700' => 'osa', 'Os09g0566050' => 'osa', 'Os10g0523700' => 'osa', 'Peaxi162Scf00002g00514' => 'pax', 'Peaxi162Scf00047g01817' => 'pax', 'Peaxi162Scf00114g00001' => 'pax', 'Peaxi162Scf00147g00613' => 'pax', 'Peaxi162Scf00389g00425' => 'pax', 'PGR042G1139' => 'pgr', 'PGR042G3273' => 'pgr', 'PGR102G2180' => 'pgr', 'PGR119G0234' => 'pgr', 'PGR119G0668' => 'pgr', 'PGSC0003DMG400007122' => 'stu', 'PGSC0003DMG400016478' => 'stu', 'PGSC0003DMG400025374' => 'stu', 'PGSC0003DMG400026536' => 'stu', 'Phvul.003G079600' => 'pvu', 'Phvul.005G115600' => 'pvu', 'Phvul.005G127100' => 'pvu', 'Phvul.006G149500' => 'pvu', 'Phvul.006G149600' => 'pvu', 'Phvul.011G071800' => 'pvu', 'Phvul.011G090400' => 'pvu', 'Potri.004G013400' => 'ptr', 'Potri.004G188100' => 'ptr', 'Potri.008G195500' => 'ptr', 'Potri.009G148800' => 'ptr', 'Potri.011G004700' => 'ptr', 'Pp3c17_22810' => 'ppa', 'Pp3c18_4480' => 'ppa', 'Pp3c19_13030' => 'ppa', 'Pp3c1_33620' => 'ppa', 'Pp3c2_9380' => 'ppa', 'PRCOL_00001023' => 'pco', 'Prupe.3G216300' => 'ppe', 'Prupe.4G019500' => 'ppe', 'Prupe.6G092500' => 'ppe', 'Prupe.6G119200' => 'ppe', 'Psat0s1945g0080' => 'psa', 'Psat0s4167g0040' => 'psa', 'Psat1g185800' => 'psa', 'Psat4g006440' => 'psa', 'Psat4g006480' => 'psa', 'Psat4g168120' => 'psa', 'Psat5g255680' => 'psa', 'Psat5g261760' => 'psa', 'Psat7g222120' => 'psa', 'PSO063G7252' => 'pso', 'PSO170G4778' => 'pso', 'PSO210G2249' => 'pso', 'PSO339G2411' => 'pso', 'PSO339G2457' => 'pso', 'PSO339G2854' => 'pso', 'PSO339G4288' => 'pso', 'PSO339G4615' => 'pso', 'PSO384G2796' => 'pso', 'PSO384G2940' => 'pso', 'PSO384G4227' => 'pso', 'PSO478G1425' => 'pso', 'PSO541G3863' => 'pso', 'PSO675G0507' => 'pso', 'PSO782G0338' => 'pso', 'PSO832G0644' => 'pso', 'QL01p013664' => 'qlo', 'QL01p036598' => 'qlo', 'QL05p072984' => 'qlo', 'QL08p005768' => 'qlo', 'QL08p032743' => 'qlo', 'QL93p0073_0439' => 'qlo', 'QL93p0073_0444' => 'qlo', 'RcHm_v2.0_Chr5g0002851' => 'rch', 'RcHm_v2.0_Chr5g0055201' => 'rch', 'RcHm_v2.0_Chr5g0061191' => 'rch', 'RcHm_v2.0_Chr7g0203231' => 'rch', 'Rhsim01G0208100' => 'rsi', 'Rhsim01G0208200' => 'rsi', 'Rhsim02G0106500' => 'rsi', 'Rhsim03G0107900' => 'rsi', 'Rhsim06G0163400' => 'rsi', 'Rhsim13G0105200' => 'rsi', 'Sabra04G0006300' => 'sbr', 'Sabra04G0127000' => 'sbr', 'Sabra08G0148700' => 'sbr', 'Sabra09G0117400' => 'sbr', 'SalBow1G3326' => 'sbo', 'SalBow3G3228' => 'sbo', 'SalBow6G1634' => 'sbo', 'SalBow6G3603' => 'sbo', 'SalBow6G5266' => 'sbo', 'SalBow7G2265' => 'sbo', 'SalBow8G0850' => 'sbo', 'SalBow8G2592' => 'sbo', 'Sc05g0009240' => 'sci', 'Sc12g0002300' => 'sci', 'Sc21g0000100' => 'sci', 'Sc21g0004720' => 'sci', 'Sed0002949' => 'sed', 'Sed0004114' => 'sed', 'Sed0004306' => 'sed', 'Sed0006172' => 'sed', 'Sed0008413' => 'sed', 'Sed0013809' => 'sed', 'Sed0019556' => 'sed', 'SEGI_03570' => 'sgi', 'SEGI_07859' => 'sgi', 'SEGI_15042' => 'sgi', 'SEGI_16263' => 'sgi', 'SEGI_16552' => 'sgi', 'SEGI_24331' => 'sgi', 'SEGI_27316' => 'sgi', 'SEGI_29521' => 'sgi', 'SEGI_41342' => 'sgi', 'SGA_v2.0_scaffold27G11617' => 'sas', 'SGA_v2.0_scaffold316G48428' => 'sas', 'SGA_v2.0_scaffold49G18261' => 'sas', 'SGA_v2.0_scaffold7G03831' => 'sas', 'SGA_v2.0_scaffold93G28359' => 'sas', 'SHI02210' => 'shi', 'SHI06028' => 'shi', 'SHI06321' => 'shi', 'SMO111G0012' => 'smo', 'SMO228G0080' => 'smo', 'SMO356G0756' => 'smo', 'Solyc02g080620.3' => 'sly', 'Solyc06g074530.1' => 'sly', 'Solyc11g066890.1' => 'sly', 'Solyc11g072520.3' => 'sly', 'Sopen02g025330' => 'spe', 'Sopen06g031000' => 'spe', 'Sopen09g008240' => 'spe', 'Sopen09g025210' => 'spe', 'Sopen11g026600' => 'spe', 'Sopen11g030170' => 'spe', 'Sp1g10420' => 'spa', 'Sp3g06570' => 'spa', 'Sp4g10660' => 'spa', 'Sp5g16460' => 'spa', 'Sp6g22710' => 'spa', 'TAR365G0112' => 'tar', 'TAR369G0717' => 'tar', 'TAR374G0976' => 'tar', 'TAR623G1128' => 'tar', 'TAR626G1937' => 'tar', 'TAR627G0123' => 'tar', 'TAR628G0305' => 'tar', 'TAR636G1176' => 'tar', 'TAR636G2442' => 'tar', 'THA.LOC104800556' => 'tha', 'THA.LOC104809501' => 'tha', 'THA.LOC104815126' => 'tha', 'THA.LOC104815732' => 'tha', 'THA.LOC104823528' => 'tha', 'Thecc.02G365600' => 'tca', 'Thecc.06G222300' => 'tca', 'Thecc.09G261800' => 'tca', 'Thecc.09G291400' => 'tca', 'Thhalv10003028m.g' => 'esa', 'Thhalv10007886m.g' => 'esa', 'Thhalv10016085m.g' => 'esa', 'Thhalv10016681m.g' => 'esa', 'Thhalv10020951m.g' => 'esa', 'TPR.G15598' => 'tpr', 'TPR.G29305' => 'tpr', 'TPR.G32395' => 'tpr', 'TPR.G36998' => 'tpr', 'TPR.G4227' => 'tpr', 'TWI18G1433' => 'twi', 'TWI31G0755' => 'twi', 'TWI38G0912' => 'twi', 'TWI75G1097' => 'twi', 'TWI75G1619' => 'twi', 'TWI79G1336' => 'twi', 'unitig_0.g943' => 'ugi', 'unitig_0.g944' => 'ugi', 'unitig_22.g6646' => 'ugi', 'unitig_37.g12681' => 'ugi', 'unitig_8.g3290' => 'ugi', 'vmacro03278' => 'vma', 'vmacro12197' => 'vma', 'vmacro14478' => 'vma', 'vmacro15787' => 'vma', 'vmacro15789' => 'vma', 'vmacro15790' => 'vma', 'vmacro15806' => 'vma', 'vmacro22907' => 'vma', 'vmacro22908' => 'vma', 'vmacro22909' => 'vma', 'vmacro23108' => 'vma', 'VMungo0540G0540' => 'vmu', 'VMungo0540G2468' => 'vmu', 'VMungo1080G0390' => 'vmu', 'VMungo1080G1165' => 'vmu', 'VMungo1127G0170' => 'vmu', 'VMungo1127G2099' => 'vmu', 'VMungo1215G3013' => 'vmu', 'Zm00001eb013110' => 'zma', 'Zm00001eb084260' => 'zma', 'Zm00001eb096110' => 'zma', 'Zm00001eb217510' => 'zma', 'Zm00001eb322550' => 'zma', 'Zm00001eb390770' => 'zma', 'Zm00001eb397170' => 'zma', 'Zm00001eb404610' => 'zma', 'Zm00001eb421790' => 'zma' ), 'gf_id' => 'HOM05D000911', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000911' ), 'data_identifier' => 'HOM05D000911', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000911', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27780' => 'bna', 'A03p35380' => 'bna', 'A04p21160' => 'bna', 'A05p40570' => 'bna', 'A06p26900' => 'bna', 'A08p33230' => 'bna', 'A09p65960' => 'bna', 'A10p18290' => 'bna', 'Aa31LG1G12990' => 'aar', 'Aa31LG1G2980' => 'aar', 'Aa31LG4G14320' => 'aar', 'Aa31LG7G11800' => 'aar', 'Aa31sc36G50' => 'aar', 'Aa31sc36G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3721' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5459' => 'aag', 'Actinidia03028' => 'ach', 'Actinidia03753' => 'ach', 'Actinidia04187' => 'ach', 'Actinidia05509' => 'ach', 'Actinidia24180' => 'ach', 'Actinidia26906' => 'ach', 'Actinidia37097' => 'ach', 'Actinidia38249' => 'ach', 'Ah.01g003470' => 'amhyb', 'Ah.01g004580' => 'amhyb', 'Ah.01g014850' => 'amhyb', 'Ah.01g016830' => 'amhyb', 'Ah.14g088000' => 'amhyb', 'AL1G22980' => 'aly', 'AL3G18990' => 'aly', 'AL4G22440' => 'aly', 'AL4G33180' => 'aly', 'AL5G22920' => 'aly', 'AL6G33660' => 'aly', 'AL8G20720' => 'aly', 'Aqoxy1G00935' => 'aox', 'Aqoxy1G02094' => 'aox', 'Aqoxy2G01239' => 'aox', 'Aqoxy4G01870' => 'aox', 'Aqoxy7G00450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.36ZVTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71EM27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5D6C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH3WRE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3NCM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RIM768' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YB5YRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z36GDV' => 'arhy', 'AT1G08250' => 'ath', 'AT1G11790' => 'ath', 'AT2G27820' => 'ath', 'AT3G07630' => 'ath', 'AT3G44720' => 'ath', 'AT5G22630' => 'ath', 'ATR0693G304' => 'atr', 'ATR0794G109' => 'atr', 'ATR0820G120' => 'atr', 'ATR1159G064' => 'atr', 'Atru.chr10.2239' => 'acertr', 'Atru.chr3.3371' => 'acertr', 'Atru.chr6.3202' => 'acertr', 'AUR62006499' => 'cqu', 'AUR62012718' => 'cqu', 'AUR62021938' => 'cqu', 'AUR62023932' => 'cqu', 'AUR62025034' => 'cqu', 'AUR62025035' => 'cqu', 'AUR62038307' => 'cqu', 'AUR62043466' => 'cqu', 'BcaB02g10748' => 'bca', 'BcaB03g13231' => 'bca', 'BcaB03g14689' => 'bca', 'BcaB05g22716' => 'bca', 'BcaB06g28172' => 'bca', 'BcaB08g36413' => 'bca', 'BcaC01g02186' => 'bca', 'BcaC01g04272' => 'bca', 'BcaC02g08080' => 'bca', 'BcaC02g08227' => 'bca', 'BcaC03g13901' => 'bca', 'BcaC04g19593' => 'bca', 'BcaC04g20874' => 'bca', 'BcaC05g29557' => 'bca', 'BcaC06g35505' => 'bca', 'BcaC07g41954' => 'bca', 'BcaC07g41955' => 'bca', 'BcaC07g41956' => 'bca', 'BcaC07g42519' => 'bca', 'BcaC07g42520' => 'bca', 'BcaC07g42523' => 'bca', 'BcaC07g42524' => 'bca', 'BcaC07g42525' => 'bca', 'BcaC08g47480' => 'bca', 'BcaC08g47481' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00530' => 'bna', 'BolC2t07178H' => 'bol', 'BolC3t16567H' => 'bol', 'BolC4t27234H' => 'bol', 'BolC5t29728H' => 'bol', 'BolC5t34622H' => 'bol', 'BolC6t40321H' => 'bol', 'BolC7t42028H' => 'bol', 'BolC8t49125H' => 'bol', 'BolC8t52538H' => 'bol', 'BolC8t52539H' => 'bol', 'BolC9t56681H' => 'bol', 'BolC9t58266H' => 'bol', 'BolSC21t60294H' => 'bol', 'BraA02t05670Z' => 'bra', 'BraA03t12716Z' => 'bra', 'BraA04t17685Z' => 'bra', 'BraA05t22788Z' => 'bra', 'BraA06t24032Z' => 'bra', 'BraA06t25625Z' => 'bra', 'BraA07t27930Z' => 'bra', 'BraA08t35242Z' => 'bra', 'BraA09t38609Z' => 'bra', 'BraA10t43905Z' => 'bra', 'C02p11060' => 'bna', 'C03p42990' => 'bna', 'C03p67310' => 'bna', 'C04p56990' => 'bna', 'C04p58660' => 'bna', 'C05p09890' => 'bna', 'C05p59680' => 'bna', 'C06p19830' => 'bna', 'C06p53040' => 'bna', 'C07p15230' => 'bna', 'C08p50070' => 'bna', 'C08p50090' => 'bna', 'C09p38330' => 'bna', 'C09p53940' => 'bna', 'CAN.G1014.1' => 'can', 'CAN.G644.30' => 'can', 'CAN.G84.47' => 'can', 'CAN.G919.8' => 'can', 'CANSAT54G0113' => 'cansat', 'CANSAT54G1286' => 'cansat', 'CANSAT64G1020' => 'cansat', 'CARHR008080' => 'chi', 'CARHR008090' => 'chi', 'CARHR012130' => 'chi', 'CARHR038390' => 'chi', 'CARHR082330' => 'chi', 'CARHR120520' => 'chi', 'CARHR151470' => 'chi', 'CARHR190950' => 'chi', 'Carub.0001s0760' => 'cru', 'Carub.0001s1146' => 'cru', 'Carub.0003s0721' => 'cru', 'Carub.0004s0858' => 'cru', 'Carub.0005s1040' => 'cru', 'Carub.0006s2035' => 'cru', 'Carub.0015s0005' => 'cru', 'Ca_01607_v3' => 'car', 'Ca_01677_v3' => 'car', 'Ca_06087_v3' => 'car', 'Ca_19238_v3' => 'car', 'Ca_19373_v3' => 'car', 'Ca_21079_v3' => 'car', 'CBR_g54016' => 'cbr', 'CBR_g54018' => 'cbr', 'CBR_g54020' => 'cbr', 'Cc01_g09780' => 'ccan', 'Cc01_g11680' => 'ccan', 'Cc02_g15610' => 'ccan', 'Cc05_g04350' => 'ccan', 'Cc09_g01580' => 'ccan', 'CDE01G0795' => 'cde', 'CDE02G2024' => 'cde', 'CDE02G2260' => 'cde', 'CDE02G4561' => 'cde', 'CDE05G2733' => 'cde', 'CDE05G3422' => 'cde', 'CDE06G2003' => 'cde', 'CDE08G0576' => 'cde', 'CDE09G0048' => 'cde', 'CDE11G0805' => 'cde', 'Cfa003644' => 'cfa', 'Cfa006290' => 'cfa', 'Cfa010080' => 'cfa', 'Cfa011376' => 'cfa', 'Cfa011576' => 'cfa', 'Cfa011577' => 'cfa', 'Cfa014389' => 'cfa', 'Ciclev10006044m.g' => 'ccl', 'Ciclev10006954m.g' => 'ccl', 'Ciclev10015131m.g' => 'ccl', 'Ciclev10015580m.g' => 'ccl', 'Ciclev10028359m.g' => 'ccl', 'Ciclev10028573m.g' => 'ccl', 'CiPaw.03G159300' => 'cil', 'CiPaw.04G115100' => 'cil', 'CiPaw.09G092800' => 'cil', 'CiPaw.10G071800' => 'cil', 'CiPaw.13G105800' => 'cil', 'CiPaw.13G141000' => 'cil', 'CiPaw.14G103400' => 'cil', 'ClCG01G012700' => 'cla', 'ClCG01G012720' => 'cla', 'ClCG01G021920' => 'cla', 'ClCG02G008870' => 'cla', 'ClCG02G020840' => 'cla', 'ClCG02G021930' => 'cla', 'COL.COLO4_19302' => 'col', 'COL.COLO4_25262' => 'col', 'COL.COLO4_31788' => 'col', 'Cpa.g.c34684' => 'cpa', 'Cpa.g.c36520.1' => 'cpa', 'Cpa.g.c45626' => 'cpa', 'Cpa.g.sc121.17' => 'cpa', 'Cpa.g.sc13.22' => 'cpa', 'Cpa.g.sc87.88' => 'cpa', 'Cre06.g261800' => 'cre', 'CsaV3_1G014500' => 'csa', 'CsaV3_1G014510' => 'csa', 'CsaV3_2G034880' => 'csa', 'CsaV3_6G014760' => 'csa', 'CsaV3_6G021500' => 'csa', 'CsaV3_6G048980' => 'csa', 'CSS0002511' => 'camsi', 'CSS0007556' => 'camsi', 'CSS0008532' => 'camsi', 'CSS0009709' => 'camsi', 'CSS0010486' => 'camsi', 'CSS0016768' => 'camsi', 'CSS0023512' => 'camsi', 'CSS0025341' => 'camsi', 'CSS0027999' => 'camsi', 'CSS0028944' => 'camsi', 'CSS0032292' => 'camsi', 'CSS0032464' => 'camsi', 'CSS0037153' => 'camsi', 'CSS0039256' => 'camsi', 'CSS0048392' => 'camsi', 'CSS0050458' => 'camsi', 'DCAR_004224' => 'dca', 'DCAR_006147' => 'dca', 'DCAR_006465' => 'dca', 'DCAR_008159' => 'dca', 'DCAR_012164' => 'dca', 'DCAR_019764' => 'dca', 'Dinv05418' => 'din', 'Dinv10839' => 'din', 'Dinv12521' => 'din', 'Dinv13900' => 'din', 'Dinv29426' => 'din', 'Duzib150G0263' => 'dzi', 'Duzib168G1178' => 'dzi', 'Duzib168G1924' => 'dzi', 'Duzib170G0299' => 'dzi', 'Duzib170G0813' => 'dzi', 'Duzib235G1128' => 'dzi', 'Duzib248G1060' => 'dzi', 'ECA232G1910' => 'eca', 'ECA233G4621' => 'eca', 'ECA238G1216' => 'eca', 'ECA238G1784' => 'eca', 'ECA248G1242' => 'eca', 'EL10Ac8g20071' => 'bvu', 'EL10Ac9g21086' => 'bvu', 'EL10Ac9g22407' => 'bvu', 'EL10Ac9g22412' => 'bvu', 'Eucgr.A01119' => 'egr', 'Eucgr.E04043' => 'egr', 'Eucgr.J00428' => 'egr', 'Eucgr.J00958' => 'egr', 'FAN11G3091' => 'fan', 'FAN11G3651' => 'fan', 'FAN16G2566' => 'fan', 'FAN21G3155' => 'fan', 'FAN21G3400' => 'fan', 'FAN21G3543' => 'fan', 'FAN25G0234' => 'fan', 'FAN25G1422' => 'fan', 'FAN25G3392' => 'fan', 'FvH4_3g01940' => 'fve', 'FvH4_3g29870' => 'fve', 'FvH4_3g33680' => 'fve', 'Glyma.09G004200' => 'gma', 'Glyma.11G151288' => 'gma', 'Glyma.11G189100' => 'gma', 'Glyma.12G072500' => 'gma', 'Glyma.12G085500' => 'gma', 'Glyma.12G181800' => 'gma', 'Glyma.12G193000' => 'gma', 'Glyma.13G309300' => 'gma', 'Glyma.13G319000' => 'gma', 'Glyma.17G012600' => 'gma', 'Gohir.A06G148600' => 'ghi', 'Gohir.A07G115800' => 'ghi', 'Gohir.A08G003600' => 'ghi', 'Gohir.A09G093300' => 'ghi', 'Gohir.A09G105400' => 'ghi', 'Gohir.A09G105500' => 'ghi', 'Gohir.D06G154600' => 'ghi', 'Gohir.D07G120200' => 'ghi', 'Gohir.D08G013900' => 'ghi', 'Gohir.D09G093100' => 'ghi', 'Gohir.D09G102200' => 'ghi', 'Gohir.D09G102300' => 'ghi', 'Gorai.001G129400' => 'gra', 'Gorai.004G008200' => 'gra', 'Gorai.006G109800' => 'gra', 'Gorai.006G119500' => 'gra', 'Gorai.006G121300' => 'gra', 'Gorai.010G180700' => 'gra', 'GSVIVG01012716001' => 'vvi', 'GSVIVG01025118001' => 'vvi', 'GSVIVG01030439001' => 'vvi', 'GSVIVG01031397001' => 'vvi', 'HanXRQChr01g0004201' => 'han', 'HanXRQChr02g0054941' => 'han', 'HanXRQChr05g0141811' => 'han', 'HanXRQChr07g0197751' => 'han', 'HanXRQChr11g0346691' => 'han', 'HanXRQChr13g0396971' => 'han', 'HanXRQChr14g0432951' => 'han', 'HanXRQChr14g0452001' => 'han', 'HanXRQChr15g0496681' => 'han', 'HanXRQChr17g0557491' => 'han', 'HanXRQChr17g0557501' => 'han', 'Haze_06809' => 'cav', 'Haze_12852' => 'cav', 'Haze_15850' => 'cav', 'Haze_23446' => 'cav', 'Haze_23942' => 'cav', 'Haze_23943' => 'cav', 'Hma1.2p1_0091F.1_g046450' => 'hma', 'Hma1.2p1_0128F.1_g059910' => 'hma', 'Hma1.2p1_0249F.1_g102260' => 'hma', 'Hma1.2p1_0453F.1_g156190' => 'hma', 'Hma1.2p1_0695F.1_g204380' => 'hma', 'Hma1.2p1_0749F.1_g212650' => 'hma', 'Hma1.2p1_2156F.1_g315420' => 'hma', 'Hma1.2p1_2686F.1_g326940' => 'hma', 'HPP92_006428' => 'vpl', 'HPP92_012069' => 'vpl', 'HPP92_014129' => 'vpl', 'HPP92_014133' => 'vpl', 'HPP92_017315' => 'vpl', 'HPP92_026445' => 'vpl', 'HPP92_026446' => 'vpl', 'Hund00774' => 'sun', 'Hund07682' => 'sun', 'Hund21413' => 'sun', 'Hund23462' => 'sun', 'Hund23463' => 'sun', 'Lalb_Chr03g0027911' => 'lal', 'Lalb_Chr13g0304271' => 'lal', 'Lalb_Chr19g0137471' => 'lal', 'Lalb_Chr22g0350651' => 'lal', 'Lalb_Chr24g0395151' => 'lal', 'Lj1A1231T40' => 'lonja', 'Lj1A221T48' => 'lonja', 'Lj1C924T12' => 'lonja', 'Lj2C993G6' => 'lonja', 'Lj3g0005790' => 'lja', 'Lj3g0015432' => 'lja', 'Lj3g0017722' => 'lja', 'Lj3g0018497' => 'lja', 'Lj4g0025071' => 'lja', 'Lsat_1_v5_gn_1_129680' => 'lsa', 'Lsat_1_v5_gn_2_25321' => 'lsa', 'Lsat_1_v5_gn_2_95461' => 'lsa', 'Lsat_1_v5_gn_4_159620' => 'lsa', 'Lsat_1_v5_gn_6_41301' => 'lsa', 'Lsat_1_v5_gn_6_74660' => 'lsa', 'Lsat_1_v5_gn_7_11520' => 'lsa', 'Lsat_1_v5_gn_9_67680' => 'lsa', 'Manes.04G008300' => 'mes', 'Manes.04G008400' => 'mes', 'Manes.04G026500' => 'mes', 'Manes.10G135300' => 'mes', 'Manes.11G157300' => 'mes', 'Manes.12G074000' => 'mes', 'Manes.16G006200' => 'mes', 'Manes.17G026400' => 'mes', 'Mapoly0024s0086' => 'mpo', 'Mapoly0024s0087' => 'mpo', 'Mapoly0071s0057' => 'mpo', 'Mapoly0204s0012' => 'mpo', 'MBI04_g37681_MAGBIO' => 'mbi', 'MBI05_g17779_MAGBIO' => 'mbi', 'MBI12_g31184_MAGBIO' => 'mbi', 'MBI17_g11083_MAGBIO' => 'mbi', 'MBI18_g03883_MAGBIO' => 'mbi', 'MBI18_g28940_MAGBIO' => 'mbi', 'MCO01G690' => 'mco', 'MD03G1109900' => 'mdo', 'MD03G1134800' => 'mdo', 'MD05G1348000' => 'mdo', 'MD10G1322400' => 'mdo', 'MD11G1123300' => 'mdo', 'MD11G1157600' => 'mdo', 'Medtr2g084875' => 'mtr', 'Medtr2g088130' => 'mtr', 'Medtr4g055310' => 'mtr', 'Medtr4g061070' => 'mtr', 'Medtr4g132250' => 'mtr', 'MELO3C004795.2' => 'cme', 'MELO3C004797.2' => 'cme', 'MELO3C007396.2' => 'cme', 'MELO3C019277.2' => 'cme', 'MELO3C021449.2' => 'cme', 'MELO3C025736.2' => 'cme', 'Migut.D02175' => 'egut', 'Migut.H01573' => 'egut', 'Migut.M01327' => 'egut', 'Migut.N02513' => 'egut', 'MSTRG.14638' => 'ama', 'MSTRG.18632' => 'ama', 'MSTRG.7203' => 'ama', 'Nitab4.5_0000533g0140' => 'nta', 'Nitab4.5_0000888g0150' => 'nta', 'Nitab4.5_0001453g0040' => 'nta', 'Nitab4.5_0002827g0090' => 'nta', 'Nitab4.5_0003082g0040' => 'nta', 'Nitab4.5_0007799g0040' => 'nta', 'Nitab4.5_0008983g0010' => 'nta', 'Nitab4.5_0009017g0020' => 'nta', 'Nn1g02132' => 'nnu', 'Nn1g03492' => 'nnu', 'Nn1g03493' => 'nnu', 'Nn1g03494' => 'nnu', 'Nn1g07164' => 'nnu', 'Nn1g07291' => 'nnu', 'Nn2g10655' => 'nnu', 'Nn2g11652' => 'nnu', 'Nn2g14008' => 'nnu', 'Nn3g17476' => 'nnu', 'Nn3g17477' => 'nnu', 'Nn4g22370' => 'nnu', 'Nn4g25255' => 'nnu', 'Nn5g27755' => 'nnu', 'Nn6g34260' => 'nnu', 'Nn6g35041' => 'nnu', 'Oeu005924.1' => 'oeu', 'Oeu008383.1' => 'oeu', 'Oeu014928.1' => 'oeu', 'Oeu019889.1' => 'oeu', 'Oeu022271.1' => 'oeu', 'Oeu025271.1' => 'oeu', 'Oeu036302.1' => 'oeu', 'Oeu044100.1' => 'oeu', 'Os01g0528300' => 'osa', 'Os03g0286200' => 'osa', 'Os04g0406600' => 'osa', 'Os07g0512000' => 'osa', 'Os07g0694600' => 'osa', 'Os08g0411000' => 'osa', 'Os09g0565700' => 'osa', 'Os09g0566050' => 'osa', 'Os10g0523700' => 'osa', 'Peaxi162Scf00002g00514' => 'pax', 'Peaxi162Scf00047g01817' => 'pax', 'Peaxi162Scf00114g00001' => 'pax', 'Peaxi162Scf00147g00613' => 'pax', 'Peaxi162Scf00389g00425' => 'pax', 'PGR042G1139' => 'pgr', 'PGR042G3273' => 'pgr', 'PGR102G2180' => 'pgr', 'PGR119G0234' => 'pgr', 'PGR119G0668' => 'pgr', 'PGSC0003DMG400007122' => 'stu', 'PGSC0003DMG400016478' => 'stu', 'PGSC0003DMG400025374' => 'stu', 'PGSC0003DMG400026536' => 'stu', 'Phvul.003G079600' => 'pvu', 'Phvul.005G115600' => 'pvu', 'Phvul.005G127100' => 'pvu', 'Phvul.006G149500' => 'pvu', 'Phvul.006G149600' => 'pvu', 'Phvul.011G071800' => 'pvu', 'Phvul.011G090400' => 'pvu', 'Potri.004G013400' => 'ptr', 'Potri.004G188100' => 'ptr', 'Potri.008G195500' => 'ptr', 'Potri.009G148800' => 'ptr', 'Potri.011G004700' => 'ptr', 'Pp3c17_22810' => 'ppa', 'Pp3c18_4480' => 'ppa', 'Pp3c19_13030' => 'ppa', 'Pp3c1_33620' => 'ppa', 'Pp3c2_9380' => 'ppa', 'PRCOL_00001023' => 'pco', 'Prupe.3G216300' => 'ppe', 'Prupe.4G019500' => 'ppe', 'Prupe.6G092500' => 'ppe', 'Prupe.6G119200' => 'ppe', 'Psat0s1945g0080' => 'psa', 'Psat0s4167g0040' => 'psa', 'Psat1g185800' => 'psa', 'Psat4g006440' => 'psa', 'Psat4g006480' => 'psa', 'Psat4g168120' => 'psa', 'Psat5g255680' => 'psa', 'Psat5g261760' => 'psa', 'Psat7g222120' => 'psa', 'PSO063G7252' => 'pso', 'PSO170G4778' => 'pso', 'PSO210G2249' => 'pso', 'PSO339G2411' => 'pso', 'PSO339G2457' => 'pso', 'PSO339G2854' => 'pso', 'PSO339G4288' => 'pso', 'PSO339G4615' => 'pso', 'PSO384G2796' => 'pso', 'PSO384G2940' => 'pso', 'PSO384G4227' => 'pso', 'PSO478G1425' => 'pso', 'PSO541G3863' => 'pso', 'PSO675G0507' => 'pso', 'PSO782G0338' => 'pso', 'PSO832G0644' => 'pso', 'QL01p013664' => 'qlo', 'QL01p036598' => 'qlo', 'QL05p072984' => 'qlo', 'QL08p005768' => 'qlo', 'QL08p032743' => 'qlo', 'QL93p0073_0439' => 'qlo', 'QL93p0073_0444' => 'qlo', 'RcHm_v2.0_Chr5g0002851' => 'rch', 'RcHm_v2.0_Chr5g0055201' => 'rch', 'RcHm_v2.0_Chr5g0061191' => 'rch', 'RcHm_v2.0_Chr7g0203231' => 'rch', 'Rhsim01G0208100' => 'rsi', 'Rhsim01G0208200' => 'rsi', 'Rhsim02G0106500' => 'rsi', 'Rhsim03G0107900' => 'rsi', 'Rhsim06G0163400' => 'rsi', 'Rhsim13G0105200' => 'rsi', 'Sabra04G0006300' => 'sbr', 'Sabra04G0127000' => 'sbr', 'Sabra08G0148700' => 'sbr', 'Sabra09G0117400' => 'sbr', 'SalBow1G3326' => 'sbo', 'SalBow3G3228' => 'sbo', 'SalBow6G1634' => 'sbo', 'SalBow6G3603' => 'sbo', 'SalBow6G5266' => 'sbo', 'SalBow7G2265' => 'sbo', 'SalBow8G0850' => 'sbo', 'SalBow8G2592' => 'sbo', 'Sc05g0009240' => 'sci', 'Sc12g0002300' => 'sci', 'Sc21g0000100' => 'sci', 'Sc21g0004720' => 'sci', 'Sed0002949' => 'sed', 'Sed0004114' => 'sed', 'Sed0004306' => 'sed', 'Sed0006172' => 'sed', 'Sed0008413' => 'sed', 'Sed0013809' => 'sed', 'Sed0019556' => 'sed', 'SEGI_03570' => 'sgi', 'SEGI_07859' => 'sgi', 'SEGI_15042' => 'sgi', 'SEGI_16263' => 'sgi', 'SEGI_16552' => 'sgi', 'SEGI_24331' => 'sgi', 'SEGI_27316' => 'sgi', 'SEGI_29521' => 'sgi', 'SEGI_41342' => 'sgi', 'SGA_v2.0_scaffold27G11617' => 'sas', 'SGA_v2.0_scaffold316G48428' => 'sas', 'SGA_v2.0_scaffold49G18261' => 'sas', 'SGA_v2.0_scaffold7G03831' => 'sas', 'SGA_v2.0_scaffold93G28359' => 'sas', 'SHI02210' => 'shi', 'SHI06028' => 'shi', 'SHI06321' => 'shi', 'SMO111G0012' => 'smo', 'SMO228G0080' => 'smo', 'SMO356G0756' => 'smo', 'Solyc02g080620.3' => 'sly', 'Solyc06g074530.1' => 'sly', 'Solyc11g066890.1' => 'sly', 'Solyc11g072520.3' => 'sly', 'Sopen02g025330' => 'spe', 'Sopen06g031000' => 'spe', 'Sopen09g008240' => 'spe', 'Sopen09g025210' => 'spe', 'Sopen11g026600' => 'spe', 'Sopen11g030170' => 'spe', 'Sp1g10420' => 'spa', 'Sp3g06570' => 'spa', 'Sp4g10660' => 'spa', 'Sp5g16460' => 'spa', 'Sp6g22710' => 'spa', 'TAR365G0112' => 'tar', 'TAR369G0717' => 'tar', 'TAR374G0976' => 'tar', 'TAR623G1128' => 'tar', 'TAR626G1937' => 'tar', 'TAR627G0123' => 'tar', 'TAR628G0305' => 'tar', 'TAR636G1176' => 'tar', 'TAR636G2442' => 'tar', 'THA.LOC104800556' => 'tha', 'THA.LOC104809501' => 'tha', 'THA.LOC104815126' => 'tha', 'THA.LOC104815732' => 'tha', 'THA.LOC104823528' => 'tha', 'Thecc.02G365600' => 'tca', 'Thecc.06G222300' => 'tca', 'Thecc.09G261800' => 'tca', 'Thecc.09G291400' => 'tca', 'Thhalv10003028m.g' => 'esa', 'Thhalv10007886m.g' => 'esa', 'Thhalv10016085m.g' => 'esa', 'Thhalv10016681m.g' => 'esa', 'Thhalv10020951m.g' => 'esa', 'TPR.G15598' => 'tpr', 'TPR.G29305' => 'tpr', 'TPR.G32395' => 'tpr', 'TPR.G36998' => 'tpr', 'TPR.G4227' => 'tpr', 'TWI18G1433' => 'twi', 'TWI31G0755' => 'twi', 'TWI38G0912' => 'twi', 'TWI75G1097' => 'twi', 'TWI75G1619' => 'twi', 'TWI79G1336' => 'twi', 'unitig_0.g943' => 'ugi', 'unitig_0.g944' => 'ugi', 'unitig_22.g6646' => 'ugi', 'unitig_37.g12681' => 'ugi', 'unitig_8.g3290' => 'ugi', 'vmacro03278' => 'vma', 'vmacro12197' => 'vma', 'vmacro14478' => 'vma', 'vmacro15787' => 'vma', 'vmacro15789' => 'vma', 'vmacro15790' => 'vma', 'vmacro15806' => 'vma', 'vmacro22907' => 'vma', 'vmacro22908' => 'vma', 'vmacro22909' => 'vma', 'vmacro23108' => 'vma', 'VMungo0540G0540' => 'vmu', 'VMungo0540G2468' => 'vmu', 'VMungo1080G0390' => 'vmu', 'VMungo1080G1165' => 'vmu', 'VMungo1127G0170' => 'vmu', 'VMungo1127G2099' => 'vmu', 'VMungo1215G3013' => 'vmu', 'Zm00001eb013110' => 'zma', 'Zm00001eb084260' => 'zma', 'Zm00001eb096110' => 'zma', 'Zm00001eb217510' => 'zma', 'Zm00001eb322550' => 'zma', 'Zm00001eb390770' => 'zma', 'Zm00001eb397170' => 'zma', 'Zm00001eb404610' => 'zma', 'Zm00001eb421790' => 'zma' ) $gf_id = 'HOM05D000911' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000911' ) $data_identifier = 'HOM05D000911' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 16, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 5, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 6, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 8, 'nnu' => (int) 16, 'oeu' => (int) 8, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 5, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 16, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421790' $species_info = array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ) $local_species = 'pco' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000911', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27780' => 'bna', 'A03p35380' => 'bna', 'A04p21160' => 'bna', 'A05p40570' => 'bna', 'A06p26900' => 'bna', 'A08p33230' => 'bna', 'A09p65960' => 'bna', 'A10p18290' => 'bna', 'Aa31LG1G12990' => 'aar', 'Aa31LG1G2980' => 'aar', 'Aa31LG4G14320' => 'aar', 'Aa31LG7G11800' => 'aar', 'Aa31sc36G50' => 'aar', 'Aa31sc36G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3721' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5459' => 'aag', 'Actinidia03028' => 'ach', 'Actinidia03753' => 'ach', 'Actinidia04187' => 'ach', 'Actinidia05509' => 'ach', 'Actinidia24180' => 'ach', 'Actinidia26906' => 'ach', 'Actinidia37097' => 'ach', 'Actinidia38249' => 'ach', 'Ah.01g003470' => 'amhyb', 'Ah.01g004580' => 'amhyb', 'Ah.01g014850' => 'amhyb', 'Ah.01g016830' => 'amhyb', 'Ah.14g088000' => 'amhyb', 'AL1G22980' => 'aly', 'AL3G18990' => 'aly', 'AL4G22440' => 'aly', 'AL4G33180' => 'aly', 'AL5G22920' => 'aly', 'AL6G33660' => 'aly', 'AL8G20720' => 'aly', 'Aqoxy1G00935' => 'aox', 'Aqoxy1G02094' => 'aox', 'Aqoxy2G01239' => 'aox', 'Aqoxy4G01870' => 'aox', 'Aqoxy7G00450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.36ZVTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71EM27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5D6C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH3WRE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3NCM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RIM768' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YB5YRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z36GDV' => 'arhy', 'AT1G08250' => 'ath', 'AT1G11790' => 'ath', 'AT2G27820' => 'ath', 'AT3G07630' => 'ath', 'AT3G44720' => 'ath', 'AT5G22630' => 'ath', 'ATR0693G304' => 'atr', 'ATR0794G109' => 'atr', 'ATR0820G120' => 'atr', 'ATR1159G064' => 'atr', 'Atru.chr10.2239' => 'acertr', 'Atru.chr3.3371' => 'acertr', 'Atru.chr6.3202' => 'acertr', 'AUR62006499' => 'cqu', 'AUR62012718' => 'cqu', 'AUR62021938' => 'cqu', 'AUR62023932' => 'cqu', 'AUR62025034' => 'cqu', 'AUR62025035' => 'cqu', 'AUR62038307' => 'cqu', 'AUR62043466' => 'cqu', 'BcaB02g10748' => 'bca', 'BcaB03g13231' => 'bca', 'BcaB03g14689' => 'bca', 'BcaB05g22716' => 'bca', 'BcaB06g28172' => 'bca', 'BcaB08g36413' => 'bca', 'BcaC01g02186' => 'bca', 'BcaC01g04272' => 'bca', 'BcaC02g08080' => 'bca', 'BcaC02g08227' => 'bca', 'BcaC03g13901' => 'bca', 'BcaC04g19593' => 'bca', 'BcaC04g20874' => 'bca', 'BcaC05g29557' => 'bca', 'BcaC06g35505' => 'bca', 'BcaC07g41954' => 'bca', 'BcaC07g41955' => 'bca', 'BcaC07g41956' => 'bca', 'BcaC07g42519' => 'bca', 'BcaC07g42520' => 'bca', 'BcaC07g42523' => 'bca', 'BcaC07g42524' => 'bca', 'BcaC07g42525' => 'bca', 'BcaC08g47480' => 'bca', 'BcaC08g47481' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00530' => 'bna', 'BolC2t07178H' => 'bol', 'BolC3t16567H' => 'bol', 'BolC4t27234H' => 'bol', 'BolC5t29728H' => 'bol', 'BolC5t34622H' => 'bol', 'BolC6t40321H' => 'bol', 'BolC7t42028H' => 'bol', 'BolC8t49125H' => 'bol', 'BolC8t52538H' => 'bol', 'BolC8t52539H' => 'bol', 'BolC9t56681H' => 'bol', 'BolC9t58266H' => 'bol', 'BolSC21t60294H' => 'bol', 'BraA02t05670Z' => 'bra', 'BraA03t12716Z' => 'bra', 'BraA04t17685Z' => 'bra', 'BraA05t22788Z' => 'bra', 'BraA06t24032Z' => 'bra', 'BraA06t25625Z' => 'bra', 'BraA07t27930Z' => 'bra', 'BraA08t35242Z' => 'bra', 'BraA09t38609Z' => 'bra', 'BraA10t43905Z' => 'bra', 'C02p11060' => 'bna', 'C03p42990' => 'bna', 'C03p67310' => 'bna', 'C04p56990' => 'bna', 'C04p58660' => 'bna', 'C05p09890' => 'bna', 'C05p59680' => 'bna', 'C06p19830' => 'bna', 'C06p53040' => 'bna', 'C07p15230' => 'bna', 'C08p50070' => 'bna', 'C08p50090' => 'bna', 'C09p38330' => 'bna', 'C09p53940' => 'bna', 'CAN.G1014.1' => 'can', 'CAN.G644.30' => 'can', 'CAN.G84.47' => 'can', 'CAN.G919.8' => 'can', 'CANSAT54G0113' => 'cansat', 'CANSAT54G1286' => 'cansat', 'CANSAT64G1020' => 'cansat', 'CARHR008080' => 'chi', 'CARHR008090' => 'chi', 'CARHR012130' => 'chi', 'CARHR038390' => 'chi', 'CARHR082330' => 'chi', 'CARHR120520' => 'chi', 'CARHR151470' => 'chi', 'CARHR190950' => 'chi', 'Carub.0001s0760' => 'cru', 'Carub.0001s1146' => 'cru', 'Carub.0003s0721' => 'cru', 'Carub.0004s0858' => 'cru', 'Carub.0005s1040' => 'cru', 'Carub.0006s2035' => 'cru', 'Carub.0015s0005' => 'cru', 'Ca_01607_v3' => 'car', 'Ca_01677_v3' => 'car', 'Ca_06087_v3' => 'car', 'Ca_19238_v3' => 'car', 'Ca_19373_v3' => 'car', 'Ca_21079_v3' => 'car', 'CBR_g54016' => 'cbr', 'CBR_g54018' => 'cbr', 'CBR_g54020' => 'cbr', 'Cc01_g09780' => 'ccan', 'Cc01_g11680' => 'ccan', 'Cc02_g15610' => 'ccan', 'Cc05_g04350' => 'ccan', 'Cc09_g01580' => 'ccan', 'CDE01G0795' => 'cde', 'CDE02G2024' => 'cde', 'CDE02G2260' => 'cde', 'CDE02G4561' => 'cde', 'CDE05G2733' => 'cde', 'CDE05G3422' => 'cde', 'CDE06G2003' => 'cde', 'CDE08G0576' => 'cde', 'CDE09G0048' => 'cde', 'CDE11G0805' => 'cde', 'Cfa003644' => 'cfa', 'Cfa006290' => 'cfa', 'Cfa010080' => 'cfa', 'Cfa011376' => 'cfa', 'Cfa011576' => 'cfa', 'Cfa011577' => 'cfa', 'Cfa014389' => 'cfa', 'Ciclev10006044m.g' => 'ccl', 'Ciclev10006954m.g' => 'ccl', 'Ciclev10015131m.g' => 'ccl', 'Ciclev10015580m.g' => 'ccl', 'Ciclev10028359m.g' => 'ccl', 'Ciclev10028573m.g' => 'ccl', 'CiPaw.03G159300' => 'cil', 'CiPaw.04G115100' => 'cil', 'CiPaw.09G092800' => 'cil', 'CiPaw.10G071800' => 'cil', 'CiPaw.13G105800' => 'cil', 'CiPaw.13G141000' => 'cil', 'CiPaw.14G103400' => 'cil', 'ClCG01G012700' => 'cla', 'ClCG01G012720' => 'cla', 'ClCG01G021920' => 'cla', 'ClCG02G008870' => 'cla', 'ClCG02G020840' => 'cla', 'ClCG02G021930' => 'cla', 'COL.COLO4_19302' => 'col', 'COL.COLO4_25262' => 'col', 'COL.COLO4_31788' => 'col', 'Cpa.g.c34684' => 'cpa', 'Cpa.g.c36520.1' => 'cpa', 'Cpa.g.c45626' => 'cpa', 'Cpa.g.sc121.17' => 'cpa', 'Cpa.g.sc13.22' => 'cpa', 'Cpa.g.sc87.88' => 'cpa', 'Cre06.g261800' => 'cre', 'CsaV3_1G014500' => 'csa', 'CsaV3_1G014510' => 'csa', 'CsaV3_2G034880' => 'csa', 'CsaV3_6G014760' => 'csa', 'CsaV3_6G021500' => 'csa', 'CsaV3_6G048980' => 'csa', 'CSS0002511' => 'camsi', 'CSS0007556' => 'camsi', 'CSS0008532' => 'camsi', 'CSS0009709' => 'camsi', 'CSS0010486' => 'camsi', 'CSS0016768' => 'camsi', 'CSS0023512' => 'camsi', 'CSS0025341' => 'camsi', 'CSS0027999' => 'camsi', 'CSS0028944' => 'camsi', 'CSS0032292' => 'camsi', 'CSS0032464' => 'camsi', 'CSS0037153' => 'camsi', 'CSS0039256' => 'camsi', 'CSS0048392' => 'camsi', 'CSS0050458' => 'camsi', 'DCAR_004224' => 'dca', 'DCAR_006147' => 'dca', 'DCAR_006465' => 'dca', 'DCAR_008159' => 'dca', 'DCAR_012164' => 'dca', 'DCAR_019764' => 'dca', 'Dinv05418' => 'din', 'Dinv10839' => 'din', 'Dinv12521' => 'din', 'Dinv13900' => 'din', 'Dinv29426' => 'din', 'Duzib150G0263' => 'dzi', 'Duzib168G1178' => 'dzi', 'Duzib168G1924' => 'dzi', 'Duzib170G0299' => 'dzi', 'Duzib170G0813' => 'dzi', 'Duzib235G1128' => 'dzi', 'Duzib248G1060' => 'dzi', 'ECA232G1910' => 'eca', 'ECA233G4621' => 'eca', 'ECA238G1216' => 'eca', 'ECA238G1784' => 'eca', 'ECA248G1242' => 'eca', 'EL10Ac8g20071' => 'bvu', 'EL10Ac9g21086' => 'bvu', 'EL10Ac9g22407' => 'bvu', 'EL10Ac9g22412' => 'bvu', 'Eucgr.A01119' => 'egr', 'Eucgr.E04043' => 'egr', 'Eucgr.J00428' => 'egr', 'Eucgr.J00958' => 'egr', 'FAN11G3091' => 'fan', 'FAN11G3651' => 'fan', 'FAN16G2566' => 'fan', 'FAN21G3155' => 'fan', 'FAN21G3400' => 'fan', 'FAN21G3543' => 'fan', 'FAN25G0234' => 'fan', 'FAN25G1422' => 'fan', 'FAN25G3392' => 'fan', 'FvH4_3g01940' => 'fve', 'FvH4_3g29870' => 'fve', 'FvH4_3g33680' => 'fve', 'Glyma.09G004200' => 'gma', 'Glyma.11G151288' => 'gma', 'Glyma.11G189100' => 'gma', 'Glyma.12G072500' => 'gma', 'Glyma.12G085500' => 'gma', 'Glyma.12G181800' => 'gma', 'Glyma.12G193000' => 'gma', 'Glyma.13G309300' => 'gma', 'Glyma.13G319000' => 'gma', 'Glyma.17G012600' => 'gma', 'Gohir.A06G148600' => 'ghi', 'Gohir.A07G115800' => 'ghi', 'Gohir.A08G003600' => 'ghi', 'Gohir.A09G093300' => 'ghi', 'Gohir.A09G105400' => 'ghi', 'Gohir.A09G105500' => 'ghi', 'Gohir.D06G154600' => 'ghi', 'Gohir.D07G120200' => 'ghi', 'Gohir.D08G013900' => 'ghi', 'Gohir.D09G093100' => 'ghi', 'Gohir.D09G102200' => 'ghi', 'Gohir.D09G102300' => 'ghi', 'Gorai.001G129400' => 'gra', 'Gorai.004G008200' => 'gra', 'Gorai.006G109800' => 'gra', 'Gorai.006G119500' => 'gra', 'Gorai.006G121300' => 'gra', 'Gorai.010G180700' => 'gra', 'GSVIVG01012716001' => 'vvi', 'GSVIVG01025118001' => 'vvi', 'GSVIVG01030439001' => 'vvi', 'GSVIVG01031397001' => 'vvi', 'HanXRQChr01g0004201' => 'han', 'HanXRQChr02g0054941' => 'han', 'HanXRQChr05g0141811' => 'han', 'HanXRQChr07g0197751' => 'han', 'HanXRQChr11g0346691' => 'han', 'HanXRQChr13g0396971' => 'han', 'HanXRQChr14g0432951' => 'han', 'HanXRQChr14g0452001' => 'han', 'HanXRQChr15g0496681' => 'han', 'HanXRQChr17g0557491' => 'han', 'HanXRQChr17g0557501' => 'han', 'Haze_06809' => 'cav', 'Haze_12852' => 'cav', 'Haze_15850' => 'cav', 'Haze_23446' => 'cav', 'Haze_23942' => 'cav', 'Haze_23943' => 'cav', 'Hma1.2p1_0091F.1_g046450' => 'hma', 'Hma1.2p1_0128F.1_g059910' => 'hma', 'Hma1.2p1_0249F.1_g102260' => 'hma', 'Hma1.2p1_0453F.1_g156190' => 'hma', 'Hma1.2p1_0695F.1_g204380' => 'hma', 'Hma1.2p1_0749F.1_g212650' => 'hma', 'Hma1.2p1_2156F.1_g315420' => 'hma', 'Hma1.2p1_2686F.1_g326940' => 'hma', 'HPP92_006428' => 'vpl', 'HPP92_012069' => 'vpl', 'HPP92_014129' => 'vpl', 'HPP92_014133' => 'vpl', 'HPP92_017315' => 'vpl', 'HPP92_026445' => 'vpl', 'HPP92_026446' => 'vpl', 'Hund00774' => 'sun', 'Hund07682' => 'sun', 'Hund21413' => 'sun', 'Hund23462' => 'sun', 'Hund23463' => 'sun', 'Lalb_Chr03g0027911' => 'lal', 'Lalb_Chr13g0304271' => 'lal', 'Lalb_Chr19g0137471' => 'lal', 'Lalb_Chr22g0350651' => 'lal', 'Lalb_Chr24g0395151' => 'lal', 'Lj1A1231T40' => 'lonja', 'Lj1A221T48' => 'lonja', 'Lj1C924T12' => 'lonja', 'Lj2C993G6' => 'lonja', 'Lj3g0005790' => 'lja', 'Lj3g0015432' => 'lja', 'Lj3g0017722' => 'lja', 'Lj3g0018497' => 'lja', 'Lj4g0025071' => 'lja', 'Lsat_1_v5_gn_1_129680' => 'lsa', 'Lsat_1_v5_gn_2_25321' => 'lsa', 'Lsat_1_v5_gn_2_95461' => 'lsa', 'Lsat_1_v5_gn_4_159620' => 'lsa', 'Lsat_1_v5_gn_6_41301' => 'lsa', 'Lsat_1_v5_gn_6_74660' => 'lsa', 'Lsat_1_v5_gn_7_11520' => 'lsa', 'Lsat_1_v5_gn_9_67680' => 'lsa', 'Manes.04G008300' => 'mes', 'Manes.04G008400' => 'mes', 'Manes.04G026500' => 'mes', 'Manes.10G135300' => 'mes', 'Manes.11G157300' => 'mes', 'Manes.12G074000' => 'mes', 'Manes.16G006200' => 'mes', 'Manes.17G026400' => 'mes', 'Mapoly0024s0086' => 'mpo', 'Mapoly0024s0087' => 'mpo', 'Mapoly0071s0057' => 'mpo', 'Mapoly0204s0012' => 'mpo', 'MBI04_g37681_MAGBIO' => 'mbi', 'MBI05_g17779_MAGBIO' => 'mbi', 'MBI12_g31184_MAGBIO' => 'mbi', 'MBI17_g11083_MAGBIO' => 'mbi', 'MBI18_g03883_MAGBIO' => 'mbi', 'MBI18_g28940_MAGBIO' => 'mbi', 'MCO01G690' => 'mco', 'MD03G1109900' => 'mdo', 'MD03G1134800' => 'mdo', 'MD05G1348000' => 'mdo', 'MD10G1322400' => 'mdo', 'MD11G1123300' => 'mdo', 'MD11G1157600' => 'mdo', 'Medtr2g084875' => 'mtr', 'Medtr2g088130' => 'mtr', 'Medtr4g055310' => 'mtr', 'Medtr4g061070' => 'mtr', 'Medtr4g132250' => 'mtr', 'MELO3C004795.2' => 'cme', 'MELO3C004797.2' => 'cme', 'MELO3C007396.2' => 'cme', 'MELO3C019277.2' => 'cme', 'MELO3C021449.2' => 'cme', 'MELO3C025736.2' => 'cme', 'Migut.D02175' => 'egut', 'Migut.H01573' => 'egut', 'Migut.M01327' => 'egut', 'Migut.N02513' => 'egut', 'MSTRG.14638' => 'ama', 'MSTRG.18632' => 'ama', 'MSTRG.7203' => 'ama', 'Nitab4.5_0000533g0140' => 'nta', 'Nitab4.5_0000888g0150' => 'nta', 'Nitab4.5_0001453g0040' => 'nta', 'Nitab4.5_0002827g0090' => 'nta', 'Nitab4.5_0003082g0040' => 'nta', 'Nitab4.5_0007799g0040' => 'nta', 'Nitab4.5_0008983g0010' => 'nta', 'Nitab4.5_0009017g0020' => 'nta', 'Nn1g02132' => 'nnu', 'Nn1g03492' => 'nnu', 'Nn1g03493' => 'nnu', 'Nn1g03494' => 'nnu', 'Nn1g07164' => 'nnu', 'Nn1g07291' => 'nnu', 'Nn2g10655' => 'nnu', 'Nn2g11652' => 'nnu', 'Nn2g14008' => 'nnu', 'Nn3g17476' => 'nnu', 'Nn3g17477' => 'nnu', 'Nn4g22370' => 'nnu', 'Nn4g25255' => 'nnu', 'Nn5g27755' => 'nnu', 'Nn6g34260' => 'nnu', 'Nn6g35041' => 'nnu', 'Oeu005924.1' => 'oeu', 'Oeu008383.1' => 'oeu', 'Oeu014928.1' => 'oeu', 'Oeu019889.1' => 'oeu', 'Oeu022271.1' => 'oeu', 'Oeu025271.1' => 'oeu', 'Oeu036302.1' => 'oeu', 'Oeu044100.1' => 'oeu', 'Os01g0528300' => 'osa', 'Os03g0286200' => 'osa', 'Os04g0406600' => 'osa', 'Os07g0512000' => 'osa', 'Os07g0694600' => 'osa', 'Os08g0411000' => 'osa', 'Os09g0565700' => 'osa', 'Os09g0566050' => 'osa', 'Os10g0523700' => 'osa', 'Peaxi162Scf00002g00514' => 'pax', 'Peaxi162Scf00047g01817' => 'pax', 'Peaxi162Scf00114g00001' => 'pax', 'Peaxi162Scf00147g00613' => 'pax', 'Peaxi162Scf00389g00425' => 'pax', 'PGR042G1139' => 'pgr', 'PGR042G3273' => 'pgr', 'PGR102G2180' => 'pgr', 'PGR119G0234' => 'pgr', 'PGR119G0668' => 'pgr', 'PGSC0003DMG400007122' => 'stu', 'PGSC0003DMG400016478' => 'stu', 'PGSC0003DMG400025374' => 'stu', 'PGSC0003DMG400026536' => 'stu', 'Phvul.003G079600' => 'pvu', 'Phvul.005G115600' => 'pvu', 'Phvul.005G127100' => 'pvu', 'Phvul.006G149500' => 'pvu', 'Phvul.006G149600' => 'pvu', 'Phvul.011G071800' => 'pvu', 'Phvul.011G090400' => 'pvu', 'Potri.004G013400' => 'ptr', 'Potri.004G188100' => 'ptr', 'Potri.008G195500' => 'ptr', 'Potri.009G148800' => 'ptr', 'Potri.011G004700' => 'ptr', 'Pp3c17_22810' => 'ppa', 'Pp3c18_4480' => 'ppa', 'Pp3c19_13030' => 'ppa', 'Pp3c1_33620' => 'ppa', 'Pp3c2_9380' => 'ppa', 'PRCOL_00001023' => 'pco', 'Prupe.3G216300' => 'ppe', 'Prupe.4G019500' => 'ppe', 'Prupe.6G092500' => 'ppe', 'Prupe.6G119200' => 'ppe', 'Psat0s1945g0080' => 'psa', 'Psat0s4167g0040' => 'psa', 'Psat1g185800' => 'psa', 'Psat4g006440' => 'psa', 'Psat4g006480' => 'psa', 'Psat4g168120' => 'psa', 'Psat5g255680' => 'psa', 'Psat5g261760' => 'psa', 'Psat7g222120' => 'psa', 'PSO063G7252' => 'pso', 'PSO170G4778' => 'pso', 'PSO210G2249' => 'pso', 'PSO339G2411' => 'pso', 'PSO339G2457' => 'pso', 'PSO339G2854' => 'pso', 'PSO339G4288' => 'pso', 'PSO339G4615' => 'pso', 'PSO384G2796' => 'pso', 'PSO384G2940' => 'pso', 'PSO384G4227' => 'pso', 'PSO478G1425' => 'pso', 'PSO541G3863' => 'pso', 'PSO675G0507' => 'pso', 'PSO782G0338' => 'pso', 'PSO832G0644' => 'pso', 'QL01p013664' => 'qlo', 'QL01p036598' => 'qlo', 'QL05p072984' => 'qlo', 'QL08p005768' => 'qlo', 'QL08p032743' => 'qlo', 'QL93p0073_0439' => 'qlo', 'QL93p0073_0444' => 'qlo', 'RcHm_v2.0_Chr5g0002851' => 'rch', 'RcHm_v2.0_Chr5g0055201' => 'rch', 'RcHm_v2.0_Chr5g0061191' => 'rch', 'RcHm_v2.0_Chr7g0203231' => 'rch', 'Rhsim01G0208100' => 'rsi', 'Rhsim01G0208200' => 'rsi', 'Rhsim02G0106500' => 'rsi', 'Rhsim03G0107900' => 'rsi', 'Rhsim06G0163400' => 'rsi', 'Rhsim13G0105200' => 'rsi', 'Sabra04G0006300' => 'sbr', 'Sabra04G0127000' => 'sbr', 'Sabra08G0148700' => 'sbr', 'Sabra09G0117400' => 'sbr', 'SalBow1G3326' => 'sbo', 'SalBow3G3228' => 'sbo', 'SalBow6G1634' => 'sbo', 'SalBow6G3603' => 'sbo', 'SalBow6G5266' => 'sbo', 'SalBow7G2265' => 'sbo', 'SalBow8G0850' => 'sbo', 'SalBow8G2592' => 'sbo', 'Sc05g0009240' => 'sci', 'Sc12g0002300' => 'sci', 'Sc21g0000100' => 'sci', 'Sc21g0004720' => 'sci', 'Sed0002949' => 'sed', 'Sed0004114' => 'sed', 'Sed0004306' => 'sed', 'Sed0006172' => 'sed', 'Sed0008413' => 'sed', 'Sed0013809' => 'sed', 'Sed0019556' => 'sed', 'SEGI_03570' => 'sgi', 'SEGI_07859' => 'sgi', 'SEGI_15042' => 'sgi', 'SEGI_16263' => 'sgi', 'SEGI_16552' => 'sgi', 'SEGI_24331' => 'sgi', 'SEGI_27316' => 'sgi', 'SEGI_29521' => 'sgi', 'SEGI_41342' => 'sgi', 'SGA_v2.0_scaffold27G11617' => 'sas', 'SGA_v2.0_scaffold316G48428' => 'sas', 'SGA_v2.0_scaffold49G18261' => 'sas', 'SGA_v2.0_scaffold7G03831' => 'sas', 'SGA_v2.0_scaffold93G28359' => 'sas', 'SHI02210' => 'shi', 'SHI06028' => 'shi', 'SHI06321' => 'shi', 'SMO111G0012' => 'smo', 'SMO228G0080' => 'smo', 'SMO356G0756' => 'smo', 'Solyc02g080620.3' => 'sly', 'Solyc06g074530.1' => 'sly', 'Solyc11g066890.1' => 'sly', 'Solyc11g072520.3' => 'sly', 'Sopen02g025330' => 'spe', 'Sopen06g031000' => 'spe', 'Sopen09g008240' => 'spe', 'Sopen09g025210' => 'spe', 'Sopen11g026600' => 'spe', 'Sopen11g030170' => 'spe', 'Sp1g10420' => 'spa', 'Sp3g06570' => 'spa', 'Sp4g10660' => 'spa', 'Sp5g16460' => 'spa', 'Sp6g22710' => 'spa', 'TAR365G0112' => 'tar', 'TAR369G0717' => 'tar', 'TAR374G0976' => 'tar', 'TAR623G1128' => 'tar', 'TAR626G1937' => 'tar', 'TAR627G0123' => 'tar', 'TAR628G0305' => 'tar', 'TAR636G1176' => 'tar', 'TAR636G2442' => 'tar', 'THA.LOC104800556' => 'tha', 'THA.LOC104809501' => 'tha', 'THA.LOC104815126' => 'tha', 'THA.LOC104815732' => 'tha', 'THA.LOC104823528' => 'tha', 'Thecc.02G365600' => 'tca', 'Thecc.06G222300' => 'tca', 'Thecc.09G261800' => 'tca', 'Thecc.09G291400' => 'tca', 'Thhalv10003028m.g' => 'esa', 'Thhalv10007886m.g' => 'esa', 'Thhalv10016085m.g' => 'esa', 'Thhalv10016681m.g' => 'esa', 'Thhalv10020951m.g' => 'esa', 'TPR.G15598' => 'tpr', 'TPR.G29305' => 'tpr', 'TPR.G32395' => 'tpr', 'TPR.G36998' => 'tpr', 'TPR.G4227' => 'tpr', 'TWI18G1433' => 'twi', 'TWI31G0755' => 'twi', 'TWI38G0912' => 'twi', 'TWI75G1097' => 'twi', 'TWI75G1619' => 'twi', 'TWI79G1336' => 'twi', 'unitig_0.g943' => 'ugi', 'unitig_0.g944' => 'ugi', 'unitig_22.g6646' => 'ugi', 'unitig_37.g12681' => 'ugi', 'unitig_8.g3290' => 'ugi', 'vmacro03278' => 'vma', 'vmacro12197' => 'vma', 'vmacro14478' => 'vma', 'vmacro15787' => 'vma', 'vmacro15789' => 'vma', 'vmacro15790' => 'vma', 'vmacro15806' => 'vma', 'vmacro22907' => 'vma', 'vmacro22908' => 'vma', 'vmacro22909' => 'vma', 'vmacro23108' => 'vma', 'VMungo0540G0540' => 'vmu', 'VMungo0540G2468' => 'vmu', 'VMungo1080G0390' => 'vmu', 'VMungo1080G1165' => 'vmu', 'VMungo1127G0170' => 'vmu', 'VMungo1127G2099' => 'vmu', 'VMungo1215G3013' => 'vmu', 'Zm00001eb013110' => 'zma', 'Zm00001eb084260' => 'zma', 'Zm00001eb096110' => 'zma', 'Zm00001eb217510' => 'zma', 'Zm00001eb322550' => 'zma', 'Zm00001eb390770' => 'zma', 'Zm00001eb397170' => 'zma', 'Zm00001eb404610' => 'zma', 'Zm00001eb421790' => 'zma' ), 'gf_id' => 'HOM05D000911', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000911' ), 'data_identifier' => 'HOM05D000911', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000911', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27780' => 'bna', 'A03p35380' => 'bna', 'A04p21160' => 'bna', 'A05p40570' => 'bna', 'A06p26900' => 'bna', 'A08p33230' => 'bna', 'A09p65960' => 'bna', 'A10p18290' => 'bna', 'Aa31LG1G12990' => 'aar', 'Aa31LG1G2980' => 'aar', 'Aa31LG4G14320' => 'aar', 'Aa31LG7G11800' => 'aar', 'Aa31sc36G50' => 'aar', 'Aa31sc36G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3721' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5459' => 'aag', 'Actinidia03028' => 'ach', 'Actinidia03753' => 'ach', 'Actinidia04187' => 'ach', 'Actinidia05509' => 'ach', 'Actinidia24180' => 'ach', 'Actinidia26906' => 'ach', 'Actinidia37097' => 'ach', 'Actinidia38249' => 'ach', 'Ah.01g003470' => 'amhyb', 'Ah.01g004580' => 'amhyb', 'Ah.01g014850' => 'amhyb', 'Ah.01g016830' => 'amhyb', 'Ah.14g088000' => 'amhyb', 'AL1G22980' => 'aly', 'AL3G18990' => 'aly', 'AL4G22440' => 'aly', 'AL4G33180' => 'aly', 'AL5G22920' => 'aly', 'AL6G33660' => 'aly', 'AL8G20720' => 'aly', 'Aqoxy1G00935' => 'aox', 'Aqoxy1G02094' => 'aox', 'Aqoxy2G01239' => 'aox', 'Aqoxy4G01870' => 'aox', 'Aqoxy7G00450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.36ZVTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71EM27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5D6C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH3WRE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3NCM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RIM768' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YB5YRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z36GDV' => 'arhy', 'AT1G08250' => 'ath', 'AT1G11790' => 'ath', 'AT2G27820' => 'ath', 'AT3G07630' => 'ath', 'AT3G44720' => 'ath', 'AT5G22630' => 'ath', 'ATR0693G304' => 'atr', 'ATR0794G109' => 'atr', 'ATR0820G120' => 'atr', 'ATR1159G064' => 'atr', 'Atru.chr10.2239' => 'acertr', 'Atru.chr3.3371' => 'acertr', 'Atru.chr6.3202' => 'acertr', 'AUR62006499' => 'cqu', 'AUR62012718' => 'cqu', 'AUR62021938' => 'cqu', 'AUR62023932' => 'cqu', 'AUR62025034' => 'cqu', 'AUR62025035' => 'cqu', 'AUR62038307' => 'cqu', 'AUR62043466' => 'cqu', 'BcaB02g10748' => 'bca', 'BcaB03g13231' => 'bca', 'BcaB03g14689' => 'bca', 'BcaB05g22716' => 'bca', 'BcaB06g28172' => 'bca', 'BcaB08g36413' => 'bca', 'BcaC01g02186' => 'bca', 'BcaC01g04272' => 'bca', 'BcaC02g08080' => 'bca', 'BcaC02g08227' => 'bca', 'BcaC03g13901' => 'bca', 'BcaC04g19593' => 'bca', 'BcaC04g20874' => 'bca', 'BcaC05g29557' => 'bca', 'BcaC06g35505' => 'bca', 'BcaC07g41954' => 'bca', 'BcaC07g41955' => 'bca', 'BcaC07g41956' => 'bca', 'BcaC07g42519' => 'bca', 'BcaC07g42520' => 'bca', 'BcaC07g42523' => 'bca', 'BcaC07g42524' => 'bca', 'BcaC07g42525' => 'bca', 'BcaC08g47480' => 'bca', 'BcaC08g47481' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00530' => 'bna', 'BolC2t07178H' => 'bol', 'BolC3t16567H' => 'bol', 'BolC4t27234H' => 'bol', 'BolC5t29728H' => 'bol', 'BolC5t34622H' => 'bol', 'BolC6t40321H' => 'bol', 'BolC7t42028H' => 'bol', 'BolC8t49125H' => 'bol', 'BolC8t52538H' => 'bol', 'BolC8t52539H' => 'bol', 'BolC9t56681H' => 'bol', 'BolC9t58266H' => 'bol', 'BolSC21t60294H' => 'bol', 'BraA02t05670Z' => 'bra', 'BraA03t12716Z' => 'bra', 'BraA04t17685Z' => 'bra', 'BraA05t22788Z' => 'bra', 'BraA06t24032Z' => 'bra', 'BraA06t25625Z' => 'bra', 'BraA07t27930Z' => 'bra', 'BraA08t35242Z' => 'bra', 'BraA09t38609Z' => 'bra', 'BraA10t43905Z' => 'bra', 'C02p11060' => 'bna', 'C03p42990' => 'bna', 'C03p67310' => 'bna', 'C04p56990' => 'bna', 'C04p58660' => 'bna', 'C05p09890' => 'bna', 'C05p59680' => 'bna', 'C06p19830' => 'bna', 'C06p53040' => 'bna', 'C07p15230' => 'bna', 'C08p50070' => 'bna', 'C08p50090' => 'bna', 'C09p38330' => 'bna', 'C09p53940' => 'bna', 'CAN.G1014.1' => 'can', 'CAN.G644.30' => 'can', 'CAN.G84.47' => 'can', 'CAN.G919.8' => 'can', 'CANSAT54G0113' => 'cansat', 'CANSAT54G1286' => 'cansat', 'CANSAT64G1020' => 'cansat', 'CARHR008080' => 'chi', 'CARHR008090' => 'chi', 'CARHR012130' => 'chi', 'CARHR038390' => 'chi', 'CARHR082330' => 'chi', 'CARHR120520' => 'chi', 'CARHR151470' => 'chi', 'CARHR190950' => 'chi', 'Carub.0001s0760' => 'cru', 'Carub.0001s1146' => 'cru', 'Carub.0003s0721' => 'cru', 'Carub.0004s0858' => 'cru', 'Carub.0005s1040' => 'cru', 'Carub.0006s2035' => 'cru', 'Carub.0015s0005' => 'cru', 'Ca_01607_v3' => 'car', 'Ca_01677_v3' => 'car', 'Ca_06087_v3' => 'car', 'Ca_19238_v3' => 'car', 'Ca_19373_v3' => 'car', 'Ca_21079_v3' => 'car', 'CBR_g54016' => 'cbr', 'CBR_g54018' => 'cbr', 'CBR_g54020' => 'cbr', 'Cc01_g09780' => 'ccan', 'Cc01_g11680' => 'ccan', 'Cc02_g15610' => 'ccan', 'Cc05_g04350' => 'ccan', 'Cc09_g01580' => 'ccan', 'CDE01G0795' => 'cde', 'CDE02G2024' => 'cde', 'CDE02G2260' => 'cde', 'CDE02G4561' => 'cde', 'CDE05G2733' => 'cde', 'CDE05G3422' => 'cde', 'CDE06G2003' => 'cde', 'CDE08G0576' => 'cde', 'CDE09G0048' => 'cde', 'CDE11G0805' => 'cde', 'Cfa003644' => 'cfa', 'Cfa006290' => 'cfa', 'Cfa010080' => 'cfa', 'Cfa011376' => 'cfa', 'Cfa011576' => 'cfa', 'Cfa011577' => 'cfa', 'Cfa014389' => 'cfa', 'Ciclev10006044m.g' => 'ccl', 'Ciclev10006954m.g' => 'ccl', 'Ciclev10015131m.g' => 'ccl', 'Ciclev10015580m.g' => 'ccl', 'Ciclev10028359m.g' => 'ccl', 'Ciclev10028573m.g' => 'ccl', 'CiPaw.03G159300' => 'cil', 'CiPaw.04G115100' => 'cil', 'CiPaw.09G092800' => 'cil', 'CiPaw.10G071800' => 'cil', 'CiPaw.13G105800' => 'cil', 'CiPaw.13G141000' => 'cil', 'CiPaw.14G103400' => 'cil', 'ClCG01G012700' => 'cla', 'ClCG01G012720' => 'cla', 'ClCG01G021920' => 'cla', 'ClCG02G008870' => 'cla', 'ClCG02G020840' => 'cla', 'ClCG02G021930' => 'cla', 'COL.COLO4_19302' => 'col', 'COL.COLO4_25262' => 'col', 'COL.COLO4_31788' => 'col', 'Cpa.g.c34684' => 'cpa', 'Cpa.g.c36520.1' => 'cpa', 'Cpa.g.c45626' => 'cpa', 'Cpa.g.sc121.17' => 'cpa', 'Cpa.g.sc13.22' => 'cpa', 'Cpa.g.sc87.88' => 'cpa', 'Cre06.g261800' => 'cre', 'CsaV3_1G014500' => 'csa', 'CsaV3_1G014510' => 'csa', 'CsaV3_2G034880' => 'csa', 'CsaV3_6G014760' => 'csa', 'CsaV3_6G021500' => 'csa', 'CsaV3_6G048980' => 'csa', 'CSS0002511' => 'camsi', 'CSS0007556' => 'camsi', 'CSS0008532' => 'camsi', 'CSS0009709' => 'camsi', 'CSS0010486' => 'camsi', 'CSS0016768' => 'camsi', 'CSS0023512' => 'camsi', 'CSS0025341' => 'camsi', 'CSS0027999' => 'camsi', 'CSS0028944' => 'camsi', 'CSS0032292' => 'camsi', 'CSS0032464' => 'camsi', 'CSS0037153' => 'camsi', 'CSS0039256' => 'camsi', 'CSS0048392' => 'camsi', 'CSS0050458' => 'camsi', 'DCAR_004224' => 'dca', 'DCAR_006147' => 'dca', 'DCAR_006465' => 'dca', 'DCAR_008159' => 'dca', 'DCAR_012164' => 'dca', 'DCAR_019764' => 'dca', 'Dinv05418' => 'din', 'Dinv10839' => 'din', 'Dinv12521' => 'din', 'Dinv13900' => 'din', 'Dinv29426' => 'din', 'Duzib150G0263' => 'dzi', 'Duzib168G1178' => 'dzi', 'Duzib168G1924' => 'dzi', 'Duzib170G0299' => 'dzi', 'Duzib170G0813' => 'dzi', 'Duzib235G1128' => 'dzi', 'Duzib248G1060' => 'dzi', 'ECA232G1910' => 'eca', 'ECA233G4621' => 'eca', 'ECA238G1216' => 'eca', 'ECA238G1784' => 'eca', 'ECA248G1242' => 'eca', 'EL10Ac8g20071' => 'bvu', 'EL10Ac9g21086' => 'bvu', 'EL10Ac9g22407' => 'bvu', 'EL10Ac9g22412' => 'bvu', 'Eucgr.A01119' => 'egr', 'Eucgr.E04043' => 'egr', 'Eucgr.J00428' => 'egr', 'Eucgr.J00958' => 'egr', 'FAN11G3091' => 'fan', 'FAN11G3651' => 'fan', 'FAN16G2566' => 'fan', 'FAN21G3155' => 'fan', 'FAN21G3400' => 'fan', 'FAN21G3543' => 'fan', 'FAN25G0234' => 'fan', 'FAN25G1422' => 'fan', 'FAN25G3392' => 'fan', 'FvH4_3g01940' => 'fve', 'FvH4_3g29870' => 'fve', 'FvH4_3g33680' => 'fve', 'Glyma.09G004200' => 'gma', 'Glyma.11G151288' => 'gma', 'Glyma.11G189100' => 'gma', 'Glyma.12G072500' => 'gma', 'Glyma.12G085500' => 'gma', 'Glyma.12G181800' => 'gma', 'Glyma.12G193000' => 'gma', 'Glyma.13G309300' => 'gma', 'Glyma.13G319000' => 'gma', 'Glyma.17G012600' => 'gma', 'Gohir.A06G148600' => 'ghi', 'Gohir.A07G115800' => 'ghi', 'Gohir.A08G003600' => 'ghi', 'Gohir.A09G093300' => 'ghi', 'Gohir.A09G105400' => 'ghi', 'Gohir.A09G105500' => 'ghi', 'Gohir.D06G154600' => 'ghi', 'Gohir.D07G120200' => 'ghi', 'Gohir.D08G013900' => 'ghi', 'Gohir.D09G093100' => 'ghi', 'Gohir.D09G102200' => 'ghi', 'Gohir.D09G102300' => 'ghi', 'Gorai.001G129400' => 'gra', 'Gorai.004G008200' => 'gra', 'Gorai.006G109800' => 'gra', 'Gorai.006G119500' => 'gra', 'Gorai.006G121300' => 'gra', 'Gorai.010G180700' => 'gra', 'GSVIVG01012716001' => 'vvi', 'GSVIVG01025118001' => 'vvi', 'GSVIVG01030439001' => 'vvi', 'GSVIVG01031397001' => 'vvi', 'HanXRQChr01g0004201' => 'han', 'HanXRQChr02g0054941' => 'han', 'HanXRQChr05g0141811' => 'han', 'HanXRQChr07g0197751' => 'han', 'HanXRQChr11g0346691' => 'han', 'HanXRQChr13g0396971' => 'han', 'HanXRQChr14g0432951' => 'han', 'HanXRQChr14g0452001' => 'han', 'HanXRQChr15g0496681' => 'han', 'HanXRQChr17g0557491' => 'han', 'HanXRQChr17g0557501' => 'han', 'Haze_06809' => 'cav', 'Haze_12852' => 'cav', 'Haze_15850' => 'cav', 'Haze_23446' => 'cav', 'Haze_23942' => 'cav', 'Haze_23943' => 'cav', 'Hma1.2p1_0091F.1_g046450' => 'hma', 'Hma1.2p1_0128F.1_g059910' => 'hma', 'Hma1.2p1_0249F.1_g102260' => 'hma', 'Hma1.2p1_0453F.1_g156190' => 'hma', 'Hma1.2p1_0695F.1_g204380' => 'hma', 'Hma1.2p1_0749F.1_g212650' => 'hma', 'Hma1.2p1_2156F.1_g315420' => 'hma', 'Hma1.2p1_2686F.1_g326940' => 'hma', 'HPP92_006428' => 'vpl', 'HPP92_012069' => 'vpl', 'HPP92_014129' => 'vpl', 'HPP92_014133' => 'vpl', 'HPP92_017315' => 'vpl', 'HPP92_026445' => 'vpl', 'HPP92_026446' => 'vpl', 'Hund00774' => 'sun', 'Hund07682' => 'sun', 'Hund21413' => 'sun', 'Hund23462' => 'sun', 'Hund23463' => 'sun', 'Lalb_Chr03g0027911' => 'lal', 'Lalb_Chr13g0304271' => 'lal', 'Lalb_Chr19g0137471' => 'lal', 'Lalb_Chr22g0350651' => 'lal', 'Lalb_Chr24g0395151' => 'lal', 'Lj1A1231T40' => 'lonja', 'Lj1A221T48' => 'lonja', 'Lj1C924T12' => 'lonja', 'Lj2C993G6' => 'lonja', 'Lj3g0005790' => 'lja', 'Lj3g0015432' => 'lja', 'Lj3g0017722' => 'lja', 'Lj3g0018497' => 'lja', 'Lj4g0025071' => 'lja', 'Lsat_1_v5_gn_1_129680' => 'lsa', 'Lsat_1_v5_gn_2_25321' => 'lsa', 'Lsat_1_v5_gn_2_95461' => 'lsa', 'Lsat_1_v5_gn_4_159620' => 'lsa', 'Lsat_1_v5_gn_6_41301' => 'lsa', 'Lsat_1_v5_gn_6_74660' => 'lsa', 'Lsat_1_v5_gn_7_11520' => 'lsa', 'Lsat_1_v5_gn_9_67680' => 'lsa', 'Manes.04G008300' => 'mes', 'Manes.04G008400' => 'mes', 'Manes.04G026500' => 'mes', 'Manes.10G135300' => 'mes', 'Manes.11G157300' => 'mes', 'Manes.12G074000' => 'mes', 'Manes.16G006200' => 'mes', 'Manes.17G026400' => 'mes', 'Mapoly0024s0086' => 'mpo', 'Mapoly0024s0087' => 'mpo', 'Mapoly0071s0057' => 'mpo', 'Mapoly0204s0012' => 'mpo', 'MBI04_g37681_MAGBIO' => 'mbi', 'MBI05_g17779_MAGBIO' => 'mbi', 'MBI12_g31184_MAGBIO' => 'mbi', 'MBI17_g11083_MAGBIO' => 'mbi', 'MBI18_g03883_MAGBIO' => 'mbi', 'MBI18_g28940_MAGBIO' => 'mbi', 'MCO01G690' => 'mco', 'MD03G1109900' => 'mdo', 'MD03G1134800' => 'mdo', 'MD05G1348000' => 'mdo', 'MD10G1322400' => 'mdo', 'MD11G1123300' => 'mdo', 'MD11G1157600' => 'mdo', 'Medtr2g084875' => 'mtr', 'Medtr2g088130' => 'mtr', 'Medtr4g055310' => 'mtr', 'Medtr4g061070' => 'mtr', 'Medtr4g132250' => 'mtr', 'MELO3C004795.2' => 'cme', 'MELO3C004797.2' => 'cme', 'MELO3C007396.2' => 'cme', 'MELO3C019277.2' => 'cme', 'MELO3C021449.2' => 'cme', 'MELO3C025736.2' => 'cme', 'Migut.D02175' => 'egut', 'Migut.H01573' => 'egut', 'Migut.M01327' => 'egut', 'Migut.N02513' => 'egut', 'MSTRG.14638' => 'ama', 'MSTRG.18632' => 'ama', 'MSTRG.7203' => 'ama', 'Nitab4.5_0000533g0140' => 'nta', 'Nitab4.5_0000888g0150' => 'nta', 'Nitab4.5_0001453g0040' => 'nta', 'Nitab4.5_0002827g0090' => 'nta', 'Nitab4.5_0003082g0040' => 'nta', 'Nitab4.5_0007799g0040' => 'nta', 'Nitab4.5_0008983g0010' => 'nta', 'Nitab4.5_0009017g0020' => 'nta', 'Nn1g02132' => 'nnu', 'Nn1g03492' => 'nnu', 'Nn1g03493' => 'nnu', 'Nn1g03494' => 'nnu', 'Nn1g07164' => 'nnu', 'Nn1g07291' => 'nnu', 'Nn2g10655' => 'nnu', 'Nn2g11652' => 'nnu', 'Nn2g14008' => 'nnu', 'Nn3g17476' => 'nnu', 'Nn3g17477' => 'nnu', 'Nn4g22370' => 'nnu', 'Nn4g25255' => 'nnu', 'Nn5g27755' => 'nnu', 'Nn6g34260' => 'nnu', 'Nn6g35041' => 'nnu', 'Oeu005924.1' => 'oeu', 'Oeu008383.1' => 'oeu', 'Oeu014928.1' => 'oeu', 'Oeu019889.1' => 'oeu', 'Oeu022271.1' => 'oeu', 'Oeu025271.1' => 'oeu', 'Oeu036302.1' => 'oeu', 'Oeu044100.1' => 'oeu', 'Os01g0528300' => 'osa', 'Os03g0286200' => 'osa', 'Os04g0406600' => 'osa', 'Os07g0512000' => 'osa', 'Os07g0694600' => 'osa', 'Os08g0411000' => 'osa', 'Os09g0565700' => 'osa', 'Os09g0566050' => 'osa', 'Os10g0523700' => 'osa', 'Peaxi162Scf00002g00514' => 'pax', 'Peaxi162Scf00047g01817' => 'pax', 'Peaxi162Scf00114g00001' => 'pax', 'Peaxi162Scf00147g00613' => 'pax', 'Peaxi162Scf00389g00425' => 'pax', 'PGR042G1139' => 'pgr', 'PGR042G3273' => 'pgr', 'PGR102G2180' => 'pgr', 'PGR119G0234' => 'pgr', 'PGR119G0668' => 'pgr', 'PGSC0003DMG400007122' => 'stu', 'PGSC0003DMG400016478' => 'stu', 'PGSC0003DMG400025374' => 'stu', 'PGSC0003DMG400026536' => 'stu', 'Phvul.003G079600' => 'pvu', 'Phvul.005G115600' => 'pvu', 'Phvul.005G127100' => 'pvu', 'Phvul.006G149500' => 'pvu', 'Phvul.006G149600' => 'pvu', 'Phvul.011G071800' => 'pvu', 'Phvul.011G090400' => 'pvu', 'Potri.004G013400' => 'ptr', 'Potri.004G188100' => 'ptr', 'Potri.008G195500' => 'ptr', 'Potri.009G148800' => 'ptr', 'Potri.011G004700' => 'ptr', 'Pp3c17_22810' => 'ppa', 'Pp3c18_4480' => 'ppa', 'Pp3c19_13030' => 'ppa', 'Pp3c1_33620' => 'ppa', 'Pp3c2_9380' => 'ppa', 'PRCOL_00001023' => 'pco', 'Prupe.3G216300' => 'ppe', 'Prupe.4G019500' => 'ppe', 'Prupe.6G092500' => 'ppe', 'Prupe.6G119200' => 'ppe', 'Psat0s1945g0080' => 'psa', 'Psat0s4167g0040' => 'psa', 'Psat1g185800' => 'psa', 'Psat4g006440' => 'psa', 'Psat4g006480' => 'psa', 'Psat4g168120' => 'psa', 'Psat5g255680' => 'psa', 'Psat5g261760' => 'psa', 'Psat7g222120' => 'psa', 'PSO063G7252' => 'pso', 'PSO170G4778' => 'pso', 'PSO210G2249' => 'pso', 'PSO339G2411' => 'pso', 'PSO339G2457' => 'pso', 'PSO339G2854' => 'pso', 'PSO339G4288' => 'pso', 'PSO339G4615' => 'pso', 'PSO384G2796' => 'pso', 'PSO384G2940' => 'pso', 'PSO384G4227' => 'pso', 'PSO478G1425' => 'pso', 'PSO541G3863' => 'pso', 'PSO675G0507' => 'pso', 'PSO782G0338' => 'pso', 'PSO832G0644' => 'pso', 'QL01p013664' => 'qlo', 'QL01p036598' => 'qlo', 'QL05p072984' => 'qlo', 'QL08p005768' => 'qlo', 'QL08p032743' => 'qlo', 'QL93p0073_0439' => 'qlo', 'QL93p0073_0444' => 'qlo', 'RcHm_v2.0_Chr5g0002851' => 'rch', 'RcHm_v2.0_Chr5g0055201' => 'rch', 'RcHm_v2.0_Chr5g0061191' => 'rch', 'RcHm_v2.0_Chr7g0203231' => 'rch', 'Rhsim01G0208100' => 'rsi', 'Rhsim01G0208200' => 'rsi', 'Rhsim02G0106500' => 'rsi', 'Rhsim03G0107900' => 'rsi', 'Rhsim06G0163400' => 'rsi', 'Rhsim13G0105200' => 'rsi', 'Sabra04G0006300' => 'sbr', 'Sabra04G0127000' => 'sbr', 'Sabra08G0148700' => 'sbr', 'Sabra09G0117400' => 'sbr', 'SalBow1G3326' => 'sbo', 'SalBow3G3228' => 'sbo', 'SalBow6G1634' => 'sbo', 'SalBow6G3603' => 'sbo', 'SalBow6G5266' => 'sbo', 'SalBow7G2265' => 'sbo', 'SalBow8G0850' => 'sbo', 'SalBow8G2592' => 'sbo', 'Sc05g0009240' => 'sci', 'Sc12g0002300' => 'sci', 'Sc21g0000100' => 'sci', 'Sc21g0004720' => 'sci', 'Sed0002949' => 'sed', 'Sed0004114' => 'sed', 'Sed0004306' => 'sed', 'Sed0006172' => 'sed', 'Sed0008413' => 'sed', 'Sed0013809' => 'sed', 'Sed0019556' => 'sed', 'SEGI_03570' => 'sgi', 'SEGI_07859' => 'sgi', 'SEGI_15042' => 'sgi', 'SEGI_16263' => 'sgi', 'SEGI_16552' => 'sgi', 'SEGI_24331' => 'sgi', 'SEGI_27316' => 'sgi', 'SEGI_29521' => 'sgi', 'SEGI_41342' => 'sgi', 'SGA_v2.0_scaffold27G11617' => 'sas', 'SGA_v2.0_scaffold316G48428' => 'sas', 'SGA_v2.0_scaffold49G18261' => 'sas', 'SGA_v2.0_scaffold7G03831' => 'sas', 'SGA_v2.0_scaffold93G28359' => 'sas', 'SHI02210' => 'shi', 'SHI06028' => 'shi', 'SHI06321' => 'shi', 'SMO111G0012' => 'smo', 'SMO228G0080' => 'smo', 'SMO356G0756' => 'smo', 'Solyc02g080620.3' => 'sly', 'Solyc06g074530.1' => 'sly', 'Solyc11g066890.1' => 'sly', 'Solyc11g072520.3' => 'sly', 'Sopen02g025330' => 'spe', 'Sopen06g031000' => 'spe', 'Sopen09g008240' => 'spe', 'Sopen09g025210' => 'spe', 'Sopen11g026600' => 'spe', 'Sopen11g030170' => 'spe', 'Sp1g10420' => 'spa', 'Sp3g06570' => 'spa', 'Sp4g10660' => 'spa', 'Sp5g16460' => 'spa', 'Sp6g22710' => 'spa', 'TAR365G0112' => 'tar', 'TAR369G0717' => 'tar', 'TAR374G0976' => 'tar', 'TAR623G1128' => 'tar', 'TAR626G1937' => 'tar', 'TAR627G0123' => 'tar', 'TAR628G0305' => 'tar', 'TAR636G1176' => 'tar', 'TAR636G2442' => 'tar', 'THA.LOC104800556' => 'tha', 'THA.LOC104809501' => 'tha', 'THA.LOC104815126' => 'tha', 'THA.LOC104815732' => 'tha', 'THA.LOC104823528' => 'tha', 'Thecc.02G365600' => 'tca', 'Thecc.06G222300' => 'tca', 'Thecc.09G261800' => 'tca', 'Thecc.09G291400' => 'tca', 'Thhalv10003028m.g' => 'esa', 'Thhalv10007886m.g' => 'esa', 'Thhalv10016085m.g' => 'esa', 'Thhalv10016681m.g' => 'esa', 'Thhalv10020951m.g' => 'esa', 'TPR.G15598' => 'tpr', 'TPR.G29305' => 'tpr', 'TPR.G32395' => 'tpr', 'TPR.G36998' => 'tpr', 'TPR.G4227' => 'tpr', 'TWI18G1433' => 'twi', 'TWI31G0755' => 'twi', 'TWI38G0912' => 'twi', 'TWI75G1097' => 'twi', 'TWI75G1619' => 'twi', 'TWI79G1336' => 'twi', 'unitig_0.g943' => 'ugi', 'unitig_0.g944' => 'ugi', 'unitig_22.g6646' => 'ugi', 'unitig_37.g12681' => 'ugi', 'unitig_8.g3290' => 'ugi', 'vmacro03278' => 'vma', 'vmacro12197' => 'vma', 'vmacro14478' => 'vma', 'vmacro15787' => 'vma', 'vmacro15789' => 'vma', 'vmacro15790' => 'vma', 'vmacro15806' => 'vma', 'vmacro22907' => 'vma', 'vmacro22908' => 'vma', 'vmacro22909' => 'vma', 'vmacro23108' => 'vma', 'VMungo0540G0540' => 'vmu', 'VMungo0540G2468' => 'vmu', 'VMungo1080G0390' => 'vmu', 'VMungo1080G1165' => 'vmu', 'VMungo1127G0170' => 'vmu', 'VMungo1127G2099' => 'vmu', 'VMungo1215G3013' => 'vmu', 'Zm00001eb013110' => 'zma', 'Zm00001eb084260' => 'zma', 'Zm00001eb096110' => 'zma', 'Zm00001eb217510' => 'zma', 'Zm00001eb322550' => 'zma', 'Zm00001eb390770' => 'zma', 'Zm00001eb397170' => 'zma', 'Zm00001eb404610' => 'zma', 'Zm00001eb421790' => 'zma' ) $gf_id = 'HOM05D000911' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000911' ) $data_identifier = 'HOM05D000911' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 16, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 5, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 6, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 8, 'nnu' => (int) 16, 'oeu' => (int) 8, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 5, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 16, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421790' $species_info = array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ) $local_species = 'pco' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000911', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27780' => 'bna', 'A03p35380' => 'bna', 'A04p21160' => 'bna', 'A05p40570' => 'bna', 'A06p26900' => 'bna', 'A08p33230' => 'bna', 'A09p65960' => 'bna', 'A10p18290' => 'bna', 'Aa31LG1G12990' => 'aar', 'Aa31LG1G2980' => 'aar', 'Aa31LG4G14320' => 'aar', 'Aa31LG7G11800' => 'aar', 'Aa31sc36G50' => 'aar', 'Aa31sc36G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3721' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5459' => 'aag', 'Actinidia03028' => 'ach', 'Actinidia03753' => 'ach', 'Actinidia04187' => 'ach', 'Actinidia05509' => 'ach', 'Actinidia24180' => 'ach', 'Actinidia26906' => 'ach', 'Actinidia37097' => 'ach', 'Actinidia38249' => 'ach', 'Ah.01g003470' => 'amhyb', 'Ah.01g004580' => 'amhyb', 'Ah.01g014850' => 'amhyb', 'Ah.01g016830' => 'amhyb', 'Ah.14g088000' => 'amhyb', 'AL1G22980' => 'aly', 'AL3G18990' => 'aly', 'AL4G22440' => 'aly', 'AL4G33180' => 'aly', 'AL5G22920' => 'aly', 'AL6G33660' => 'aly', 'AL8G20720' => 'aly', 'Aqoxy1G00935' => 'aox', 'Aqoxy1G02094' => 'aox', 'Aqoxy2G01239' => 'aox', 'Aqoxy4G01870' => 'aox', 'Aqoxy7G00450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.36ZVTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71EM27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5D6C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH3WRE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3NCM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RIM768' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YB5YRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z36GDV' => 'arhy', 'AT1G08250' => 'ath', 'AT1G11790' => 'ath', 'AT2G27820' => 'ath', 'AT3G07630' => 'ath', 'AT3G44720' => 'ath', 'AT5G22630' => 'ath', 'ATR0693G304' => 'atr', 'ATR0794G109' => 'atr', 'ATR0820G120' => 'atr', 'ATR1159G064' => 'atr', 'Atru.chr10.2239' => 'acertr', 'Atru.chr3.3371' => 'acertr', 'Atru.chr6.3202' => 'acertr', 'AUR62006499' => 'cqu', 'AUR62012718' => 'cqu', 'AUR62021938' => 'cqu', 'AUR62023932' => 'cqu', 'AUR62025034' => 'cqu', 'AUR62025035' => 'cqu', 'AUR62038307' => 'cqu', 'AUR62043466' => 'cqu', 'BcaB02g10748' => 'bca', 'BcaB03g13231' => 'bca', 'BcaB03g14689' => 'bca', 'BcaB05g22716' => 'bca', 'BcaB06g28172' => 'bca', 'BcaB08g36413' => 'bca', 'BcaC01g02186' => 'bca', 'BcaC01g04272' => 'bca', 'BcaC02g08080' => 'bca', 'BcaC02g08227' => 'bca', 'BcaC03g13901' => 'bca', 'BcaC04g19593' => 'bca', 'BcaC04g20874' => 'bca', 'BcaC05g29557' => 'bca', 'BcaC06g35505' => 'bca', 'BcaC07g41954' => 'bca', 'BcaC07g41955' => 'bca', 'BcaC07g41956' => 'bca', 'BcaC07g42519' => 'bca', 'BcaC07g42520' => 'bca', 'BcaC07g42523' => 'bca', 'BcaC07g42524' => 'bca', 'BcaC07g42525' => 'bca', 'BcaC08g47480' => 'bca', 'BcaC08g47481' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00530' => 'bna', 'BolC2t07178H' => 'bol', 'BolC3t16567H' => 'bol', 'BolC4t27234H' => 'bol', 'BolC5t29728H' => 'bol', 'BolC5t34622H' => 'bol', 'BolC6t40321H' => 'bol', 'BolC7t42028H' => 'bol', 'BolC8t49125H' => 'bol', 'BolC8t52538H' => 'bol', 'BolC8t52539H' => 'bol', 'BolC9t56681H' => 'bol', 'BolC9t58266H' => 'bol', 'BolSC21t60294H' => 'bol', 'BraA02t05670Z' => 'bra', 'BraA03t12716Z' => 'bra', 'BraA04t17685Z' => 'bra', 'BraA05t22788Z' => 'bra', 'BraA06t24032Z' => 'bra', 'BraA06t25625Z' => 'bra', 'BraA07t27930Z' => 'bra', 'BraA08t35242Z' => 'bra', 'BraA09t38609Z' => 'bra', 'BraA10t43905Z' => 'bra', 'C02p11060' => 'bna', 'C03p42990' => 'bna', 'C03p67310' => 'bna', 'C04p56990' => 'bna', 'C04p58660' => 'bna', 'C05p09890' => 'bna', 'C05p59680' => 'bna', 'C06p19830' => 'bna', 'C06p53040' => 'bna', 'C07p15230' => 'bna', 'C08p50070' => 'bna', 'C08p50090' => 'bna', 'C09p38330' => 'bna', 'C09p53940' => 'bna', 'CAN.G1014.1' => 'can', 'CAN.G644.30' => 'can', 'CAN.G84.47' => 'can', 'CAN.G919.8' => 'can', 'CANSAT54G0113' => 'cansat', 'CANSAT54G1286' => 'cansat', 'CANSAT64G1020' => 'cansat', 'CARHR008080' => 'chi', 'CARHR008090' => 'chi', 'CARHR012130' => 'chi', 'CARHR038390' => 'chi', 'CARHR082330' => 'chi', 'CARHR120520' => 'chi', 'CARHR151470' => 'chi', 'CARHR190950' => 'chi', 'Carub.0001s0760' => 'cru', 'Carub.0001s1146' => 'cru', 'Carub.0003s0721' => 'cru', 'Carub.0004s0858' => 'cru', 'Carub.0005s1040' => 'cru', 'Carub.0006s2035' => 'cru', 'Carub.0015s0005' => 'cru', 'Ca_01607_v3' => 'car', 'Ca_01677_v3' => 'car', 'Ca_06087_v3' => 'car', 'Ca_19238_v3' => 'car', 'Ca_19373_v3' => 'car', 'Ca_21079_v3' => 'car', 'CBR_g54016' => 'cbr', 'CBR_g54018' => 'cbr', 'CBR_g54020' => 'cbr', 'Cc01_g09780' => 'ccan', 'Cc01_g11680' => 'ccan', 'Cc02_g15610' => 'ccan', 'Cc05_g04350' => 'ccan', 'Cc09_g01580' => 'ccan', 'CDE01G0795' => 'cde', 'CDE02G2024' => 'cde', 'CDE02G2260' => 'cde', 'CDE02G4561' => 'cde', 'CDE05G2733' => 'cde', 'CDE05G3422' => 'cde', 'CDE06G2003' => 'cde', 'CDE08G0576' => 'cde', 'CDE09G0048' => 'cde', 'CDE11G0805' => 'cde', 'Cfa003644' => 'cfa', 'Cfa006290' => 'cfa', 'Cfa010080' => 'cfa', 'Cfa011376' => 'cfa', 'Cfa011576' => 'cfa', 'Cfa011577' => 'cfa', 'Cfa014389' => 'cfa', 'Ciclev10006044m.g' => 'ccl', 'Ciclev10006954m.g' => 'ccl', 'Ciclev10015131m.g' => 'ccl', 'Ciclev10015580m.g' => 'ccl', 'Ciclev10028359m.g' => 'ccl', 'Ciclev10028573m.g' => 'ccl', 'CiPaw.03G159300' => 'cil', 'CiPaw.04G115100' => 'cil', 'CiPaw.09G092800' => 'cil', 'CiPaw.10G071800' => 'cil', 'CiPaw.13G105800' => 'cil', 'CiPaw.13G141000' => 'cil', 'CiPaw.14G103400' => 'cil', 'ClCG01G012700' => 'cla', 'ClCG01G012720' => 'cla', 'ClCG01G021920' => 'cla', 'ClCG02G008870' => 'cla', 'ClCG02G020840' => 'cla', 'ClCG02G021930' => 'cla', 'COL.COLO4_19302' => 'col', 'COL.COLO4_25262' => 'col', 'COL.COLO4_31788' => 'col', 'Cpa.g.c34684' => 'cpa', 'Cpa.g.c36520.1' => 'cpa', 'Cpa.g.c45626' => 'cpa', 'Cpa.g.sc121.17' => 'cpa', 'Cpa.g.sc13.22' => 'cpa', 'Cpa.g.sc87.88' => 'cpa', 'Cre06.g261800' => 'cre', 'CsaV3_1G014500' => 'csa', 'CsaV3_1G014510' => 'csa', 'CsaV3_2G034880' => 'csa', 'CsaV3_6G014760' => 'csa', 'CsaV3_6G021500' => 'csa', 'CsaV3_6G048980' => 'csa', 'CSS0002511' => 'camsi', 'CSS0007556' => 'camsi', 'CSS0008532' => 'camsi', 'CSS0009709' => 'camsi', 'CSS0010486' => 'camsi', 'CSS0016768' => 'camsi', 'CSS0023512' => 'camsi', 'CSS0025341' => 'camsi', 'CSS0027999' => 'camsi', 'CSS0028944' => 'camsi', 'CSS0032292' => 'camsi', 'CSS0032464' => 'camsi', 'CSS0037153' => 'camsi', 'CSS0039256' => 'camsi', 'CSS0048392' => 'camsi', 'CSS0050458' => 'camsi', 'DCAR_004224' => 'dca', 'DCAR_006147' => 'dca', 'DCAR_006465' => 'dca', 'DCAR_008159' => 'dca', 'DCAR_012164' => 'dca', 'DCAR_019764' => 'dca', 'Dinv05418' => 'din', 'Dinv10839' => 'din', 'Dinv12521' => 'din', 'Dinv13900' => 'din', 'Dinv29426' => 'din', 'Duzib150G0263' => 'dzi', 'Duzib168G1178' => 'dzi', 'Duzib168G1924' => 'dzi', 'Duzib170G0299' => 'dzi', 'Duzib170G0813' => 'dzi', 'Duzib235G1128' => 'dzi', 'Duzib248G1060' => 'dzi', 'ECA232G1910' => 'eca', 'ECA233G4621' => 'eca', 'ECA238G1216' => 'eca', 'ECA238G1784' => 'eca', 'ECA248G1242' => 'eca', 'EL10Ac8g20071' => 'bvu', 'EL10Ac9g21086' => 'bvu', 'EL10Ac9g22407' => 'bvu', 'EL10Ac9g22412' => 'bvu', 'Eucgr.A01119' => 'egr', 'Eucgr.E04043' => 'egr', 'Eucgr.J00428' => 'egr', 'Eucgr.J00958' => 'egr', 'FAN11G3091' => 'fan', 'FAN11G3651' => 'fan', 'FAN16G2566' => 'fan', 'FAN21G3155' => 'fan', 'FAN21G3400' => 'fan', 'FAN21G3543' => 'fan', 'FAN25G0234' => 'fan', 'FAN25G1422' => 'fan', 'FAN25G3392' => 'fan', 'FvH4_3g01940' => 'fve', 'FvH4_3g29870' => 'fve', 'FvH4_3g33680' => 'fve', 'Glyma.09G004200' => 'gma', 'Glyma.11G151288' => 'gma', 'Glyma.11G189100' => 'gma', 'Glyma.12G072500' => 'gma', 'Glyma.12G085500' => 'gma', 'Glyma.12G181800' => 'gma', 'Glyma.12G193000' => 'gma', 'Glyma.13G309300' => 'gma', 'Glyma.13G319000' => 'gma', 'Glyma.17G012600' => 'gma', 'Gohir.A06G148600' => 'ghi', 'Gohir.A07G115800' => 'ghi', 'Gohir.A08G003600' => 'ghi', 'Gohir.A09G093300' => 'ghi', 'Gohir.A09G105400' => 'ghi', 'Gohir.A09G105500' => 'ghi', 'Gohir.D06G154600' => 'ghi', 'Gohir.D07G120200' => 'ghi', 'Gohir.D08G013900' => 'ghi', 'Gohir.D09G093100' => 'ghi', 'Gohir.D09G102200' => 'ghi', 'Gohir.D09G102300' => 'ghi', 'Gorai.001G129400' => 'gra', 'Gorai.004G008200' => 'gra', 'Gorai.006G109800' => 'gra', 'Gorai.006G119500' => 'gra', 'Gorai.006G121300' => 'gra', 'Gorai.010G180700' => 'gra', 'GSVIVG01012716001' => 'vvi', 'GSVIVG01025118001' => 'vvi', 'GSVIVG01030439001' => 'vvi', 'GSVIVG01031397001' => 'vvi', 'HanXRQChr01g0004201' => 'han', 'HanXRQChr02g0054941' => 'han', 'HanXRQChr05g0141811' => 'han', 'HanXRQChr07g0197751' => 'han', 'HanXRQChr11g0346691' => 'han', 'HanXRQChr13g0396971' => 'han', 'HanXRQChr14g0432951' => 'han', 'HanXRQChr14g0452001' => 'han', 'HanXRQChr15g0496681' => 'han', 'HanXRQChr17g0557491' => 'han', 'HanXRQChr17g0557501' => 'han', 'Haze_06809' => 'cav', 'Haze_12852' => 'cav', 'Haze_15850' => 'cav', 'Haze_23446' => 'cav', 'Haze_23942' => 'cav', 'Haze_23943' => 'cav', 'Hma1.2p1_0091F.1_g046450' => 'hma', 'Hma1.2p1_0128F.1_g059910' => 'hma', 'Hma1.2p1_0249F.1_g102260' => 'hma', 'Hma1.2p1_0453F.1_g156190' => 'hma', 'Hma1.2p1_0695F.1_g204380' => 'hma', 'Hma1.2p1_0749F.1_g212650' => 'hma', 'Hma1.2p1_2156F.1_g315420' => 'hma', 'Hma1.2p1_2686F.1_g326940' => 'hma', 'HPP92_006428' => 'vpl', 'HPP92_012069' => 'vpl', 'HPP92_014129' => 'vpl', 'HPP92_014133' => 'vpl', 'HPP92_017315' => 'vpl', 'HPP92_026445' => 'vpl', 'HPP92_026446' => 'vpl', 'Hund00774' => 'sun', 'Hund07682' => 'sun', 'Hund21413' => 'sun', 'Hund23462' => 'sun', 'Hund23463' => 'sun', 'Lalb_Chr03g0027911' => 'lal', 'Lalb_Chr13g0304271' => 'lal', 'Lalb_Chr19g0137471' => 'lal', 'Lalb_Chr22g0350651' => 'lal', 'Lalb_Chr24g0395151' => 'lal', 'Lj1A1231T40' => 'lonja', 'Lj1A221T48' => 'lonja', 'Lj1C924T12' => 'lonja', 'Lj2C993G6' => 'lonja', 'Lj3g0005790' => 'lja', 'Lj3g0015432' => 'lja', 'Lj3g0017722' => 'lja', 'Lj3g0018497' => 'lja', 'Lj4g0025071' => 'lja', 'Lsat_1_v5_gn_1_129680' => 'lsa', 'Lsat_1_v5_gn_2_25321' => 'lsa', 'Lsat_1_v5_gn_2_95461' => 'lsa', 'Lsat_1_v5_gn_4_159620' => 'lsa', 'Lsat_1_v5_gn_6_41301' => 'lsa', 'Lsat_1_v5_gn_6_74660' => 'lsa', 'Lsat_1_v5_gn_7_11520' => 'lsa', 'Lsat_1_v5_gn_9_67680' => 'lsa', 'Manes.04G008300' => 'mes', 'Manes.04G008400' => 'mes', 'Manes.04G026500' => 'mes', 'Manes.10G135300' => 'mes', 'Manes.11G157300' => 'mes', 'Manes.12G074000' => 'mes', 'Manes.16G006200' => 'mes', 'Manes.17G026400' => 'mes', 'Mapoly0024s0086' => 'mpo', 'Mapoly0024s0087' => 'mpo', 'Mapoly0071s0057' => 'mpo', 'Mapoly0204s0012' => 'mpo', 'MBI04_g37681_MAGBIO' => 'mbi', 'MBI05_g17779_MAGBIO' => 'mbi', 'MBI12_g31184_MAGBIO' => 'mbi', 'MBI17_g11083_MAGBIO' => 'mbi', 'MBI18_g03883_MAGBIO' => 'mbi', 'MBI18_g28940_MAGBIO' => 'mbi', 'MCO01G690' => 'mco', 'MD03G1109900' => 'mdo', 'MD03G1134800' => 'mdo', 'MD05G1348000' => 'mdo', 'MD10G1322400' => 'mdo', 'MD11G1123300' => 'mdo', 'MD11G1157600' => 'mdo', 'Medtr2g084875' => 'mtr', 'Medtr2g088130' => 'mtr', 'Medtr4g055310' => 'mtr', 'Medtr4g061070' => 'mtr', 'Medtr4g132250' => 'mtr', 'MELO3C004795.2' => 'cme', 'MELO3C004797.2' => 'cme', 'MELO3C007396.2' => 'cme', 'MELO3C019277.2' => 'cme', 'MELO3C021449.2' => 'cme', 'MELO3C025736.2' => 'cme', 'Migut.D02175' => 'egut', 'Migut.H01573' => 'egut', 'Migut.M01327' => 'egut', 'Migut.N02513' => 'egut', 'MSTRG.14638' => 'ama', 'MSTRG.18632' => 'ama', 'MSTRG.7203' => 'ama', 'Nitab4.5_0000533g0140' => 'nta', 'Nitab4.5_0000888g0150' => 'nta', 'Nitab4.5_0001453g0040' => 'nta', 'Nitab4.5_0002827g0090' => 'nta', 'Nitab4.5_0003082g0040' => 'nta', 'Nitab4.5_0007799g0040' => 'nta', 'Nitab4.5_0008983g0010' => 'nta', 'Nitab4.5_0009017g0020' => 'nta', 'Nn1g02132' => 'nnu', 'Nn1g03492' => 'nnu', 'Nn1g03493' => 'nnu', 'Nn1g03494' => 'nnu', 'Nn1g07164' => 'nnu', 'Nn1g07291' => 'nnu', 'Nn2g10655' => 'nnu', 'Nn2g11652' => 'nnu', 'Nn2g14008' => 'nnu', 'Nn3g17476' => 'nnu', 'Nn3g17477' => 'nnu', 'Nn4g22370' => 'nnu', 'Nn4g25255' => 'nnu', 'Nn5g27755' => 'nnu', 'Nn6g34260' => 'nnu', 'Nn6g35041' => 'nnu', 'Oeu005924.1' => 'oeu', 'Oeu008383.1' => 'oeu', 'Oeu014928.1' => 'oeu', 'Oeu019889.1' => 'oeu', 'Oeu022271.1' => 'oeu', 'Oeu025271.1' => 'oeu', 'Oeu036302.1' => 'oeu', 'Oeu044100.1' => 'oeu', 'Os01g0528300' => 'osa', 'Os03g0286200' => 'osa', 'Os04g0406600' => 'osa', 'Os07g0512000' => 'osa', 'Os07g0694600' => 'osa', 'Os08g0411000' => 'osa', 'Os09g0565700' => 'osa', 'Os09g0566050' => 'osa', 'Os10g0523700' => 'osa', 'Peaxi162Scf00002g00514' => 'pax', 'Peaxi162Scf00047g01817' => 'pax', 'Peaxi162Scf00114g00001' => 'pax', 'Peaxi162Scf00147g00613' => 'pax', 'Peaxi162Scf00389g00425' => 'pax', 'PGR042G1139' => 'pgr', 'PGR042G3273' => 'pgr', 'PGR102G2180' => 'pgr', 'PGR119G0234' => 'pgr', 'PGR119G0668' => 'pgr', 'PGSC0003DMG400007122' => 'stu', 'PGSC0003DMG400016478' => 'stu', 'PGSC0003DMG400025374' => 'stu', 'PGSC0003DMG400026536' => 'stu', 'Phvul.003G079600' => 'pvu', 'Phvul.005G115600' => 'pvu', 'Phvul.005G127100' => 'pvu', 'Phvul.006G149500' => 'pvu', 'Phvul.006G149600' => 'pvu', 'Phvul.011G071800' => 'pvu', 'Phvul.011G090400' => 'pvu', 'Potri.004G013400' => 'ptr', 'Potri.004G188100' => 'ptr', 'Potri.008G195500' => 'ptr', 'Potri.009G148800' => 'ptr', 'Potri.011G004700' => 'ptr', 'Pp3c17_22810' => 'ppa', 'Pp3c18_4480' => 'ppa', 'Pp3c19_13030' => 'ppa', 'Pp3c1_33620' => 'ppa', 'Pp3c2_9380' => 'ppa', 'PRCOL_00001023' => 'pco', 'Prupe.3G216300' => 'ppe', 'Prupe.4G019500' => 'ppe', 'Prupe.6G092500' => 'ppe', 'Prupe.6G119200' => 'ppe', 'Psat0s1945g0080' => 'psa', 'Psat0s4167g0040' => 'psa', 'Psat1g185800' => 'psa', 'Psat4g006440' => 'psa', 'Psat4g006480' => 'psa', 'Psat4g168120' => 'psa', 'Psat5g255680' => 'psa', 'Psat5g261760' => 'psa', 'Psat7g222120' => 'psa', 'PSO063G7252' => 'pso', 'PSO170G4778' => 'pso', 'PSO210G2249' => 'pso', 'PSO339G2411' => 'pso', 'PSO339G2457' => 'pso', 'PSO339G2854' => 'pso', 'PSO339G4288' => 'pso', 'PSO339G4615' => 'pso', 'PSO384G2796' => 'pso', 'PSO384G2940' => 'pso', 'PSO384G4227' => 'pso', 'PSO478G1425' => 'pso', 'PSO541G3863' => 'pso', 'PSO675G0507' => 'pso', 'PSO782G0338' => 'pso', 'PSO832G0644' => 'pso', 'QL01p013664' => 'qlo', 'QL01p036598' => 'qlo', 'QL05p072984' => 'qlo', 'QL08p005768' => 'qlo', 'QL08p032743' => 'qlo', 'QL93p0073_0439' => 'qlo', 'QL93p0073_0444' => 'qlo', 'RcHm_v2.0_Chr5g0002851' => 'rch', 'RcHm_v2.0_Chr5g0055201' => 'rch', 'RcHm_v2.0_Chr5g0061191' => 'rch', 'RcHm_v2.0_Chr7g0203231' => 'rch', 'Rhsim01G0208100' => 'rsi', 'Rhsim01G0208200' => 'rsi', 'Rhsim02G0106500' => 'rsi', 'Rhsim03G0107900' => 'rsi', 'Rhsim06G0163400' => 'rsi', 'Rhsim13G0105200' => 'rsi', 'Sabra04G0006300' => 'sbr', 'Sabra04G0127000' => 'sbr', 'Sabra08G0148700' => 'sbr', 'Sabra09G0117400' => 'sbr', 'SalBow1G3326' => 'sbo', 'SalBow3G3228' => 'sbo', 'SalBow6G1634' => 'sbo', 'SalBow6G3603' => 'sbo', 'SalBow6G5266' => 'sbo', 'SalBow7G2265' => 'sbo', 'SalBow8G0850' => 'sbo', 'SalBow8G2592' => 'sbo', 'Sc05g0009240' => 'sci', 'Sc12g0002300' => 'sci', 'Sc21g0000100' => 'sci', 'Sc21g0004720' => 'sci', 'Sed0002949' => 'sed', 'Sed0004114' => 'sed', 'Sed0004306' => 'sed', 'Sed0006172' => 'sed', 'Sed0008413' => 'sed', 'Sed0013809' => 'sed', 'Sed0019556' => 'sed', 'SEGI_03570' => 'sgi', 'SEGI_07859' => 'sgi', 'SEGI_15042' => 'sgi', 'SEGI_16263' => 'sgi', 'SEGI_16552' => 'sgi', 'SEGI_24331' => 'sgi', 'SEGI_27316' => 'sgi', 'SEGI_29521' => 'sgi', 'SEGI_41342' => 'sgi', 'SGA_v2.0_scaffold27G11617' => 'sas', 'SGA_v2.0_scaffold316G48428' => 'sas', 'SGA_v2.0_scaffold49G18261' => 'sas', 'SGA_v2.0_scaffold7G03831' => 'sas', 'SGA_v2.0_scaffold93G28359' => 'sas', 'SHI02210' => 'shi', 'SHI06028' => 'shi', 'SHI06321' => 'shi', 'SMO111G0012' => 'smo', 'SMO228G0080' => 'smo', 'SMO356G0756' => 'smo', 'Solyc02g080620.3' => 'sly', 'Solyc06g074530.1' => 'sly', 'Solyc11g066890.1' => 'sly', 'Solyc11g072520.3' => 'sly', 'Sopen02g025330' => 'spe', 'Sopen06g031000' => 'spe', 'Sopen09g008240' => 'spe', 'Sopen09g025210' => 'spe', 'Sopen11g026600' => 'spe', 'Sopen11g030170' => 'spe', 'Sp1g10420' => 'spa', 'Sp3g06570' => 'spa', 'Sp4g10660' => 'spa', 'Sp5g16460' => 'spa', 'Sp6g22710' => 'spa', 'TAR365G0112' => 'tar', 'TAR369G0717' => 'tar', 'TAR374G0976' => 'tar', 'TAR623G1128' => 'tar', 'TAR626G1937' => 'tar', 'TAR627G0123' => 'tar', 'TAR628G0305' => 'tar', 'TAR636G1176' => 'tar', 'TAR636G2442' => 'tar', 'THA.LOC104800556' => 'tha', 'THA.LOC104809501' => 'tha', 'THA.LOC104815126' => 'tha', 'THA.LOC104815732' => 'tha', 'THA.LOC104823528' => 'tha', 'Thecc.02G365600' => 'tca', 'Thecc.06G222300' => 'tca', 'Thecc.09G261800' => 'tca', 'Thecc.09G291400' => 'tca', 'Thhalv10003028m.g' => 'esa', 'Thhalv10007886m.g' => 'esa', 'Thhalv10016085m.g' => 'esa', 'Thhalv10016681m.g' => 'esa', 'Thhalv10020951m.g' => 'esa', 'TPR.G15598' => 'tpr', 'TPR.G29305' => 'tpr', 'TPR.G32395' => 'tpr', 'TPR.G36998' => 'tpr', 'TPR.G4227' => 'tpr', 'TWI18G1433' => 'twi', 'TWI31G0755' => 'twi', 'TWI38G0912' => 'twi', 'TWI75G1097' => 'twi', 'TWI75G1619' => 'twi', 'TWI79G1336' => 'twi', 'unitig_0.g943' => 'ugi', 'unitig_0.g944' => 'ugi', 'unitig_22.g6646' => 'ugi', 'unitig_37.g12681' => 'ugi', 'unitig_8.g3290' => 'ugi', 'vmacro03278' => 'vma', 'vmacro12197' => 'vma', 'vmacro14478' => 'vma', 'vmacro15787' => 'vma', 'vmacro15789' => 'vma', 'vmacro15790' => 'vma', 'vmacro15806' => 'vma', 'vmacro22907' => 'vma', 'vmacro22908' => 'vma', 'vmacro22909' => 'vma', 'vmacro23108' => 'vma', 'VMungo0540G0540' => 'vmu', 'VMungo0540G2468' => 'vmu', 'VMungo1080G0390' => 'vmu', 'VMungo1080G1165' => 'vmu', 'VMungo1127G0170' => 'vmu', 'VMungo1127G2099' => 'vmu', 'VMungo1215G3013' => 'vmu', 'Zm00001eb013110' => 'zma', 'Zm00001eb084260' => 'zma', 'Zm00001eb096110' => 'zma', 'Zm00001eb217510' => 'zma', 'Zm00001eb322550' => 'zma', 'Zm00001eb390770' => 'zma', 'Zm00001eb397170' => 'zma', 'Zm00001eb404610' => 'zma', 'Zm00001eb421790' => 'zma' ), 'gf_id' => 'HOM05D000911', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000911' ), 'data_identifier' => 'HOM05D000911', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000911', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27780' => 'bna', 'A03p35380' => 'bna', 'A04p21160' => 'bna', 'A05p40570' => 'bna', 'A06p26900' => 'bna', 'A08p33230' => 'bna', 'A09p65960' => 'bna', 'A10p18290' => 'bna', 'Aa31LG1G12990' => 'aar', 'Aa31LG1G2980' => 'aar', 'Aa31LG4G14320' => 'aar', 'Aa31LG7G11800' => 'aar', 'Aa31sc36G50' => 'aar', 'Aa31sc36G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3721' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5459' => 'aag', 'Actinidia03028' => 'ach', 'Actinidia03753' => 'ach', 'Actinidia04187' => 'ach', 'Actinidia05509' => 'ach', 'Actinidia24180' => 'ach', 'Actinidia26906' => 'ach', 'Actinidia37097' => 'ach', 'Actinidia38249' => 'ach', 'Ah.01g003470' => 'amhyb', 'Ah.01g004580' => 'amhyb', 'Ah.01g014850' => 'amhyb', 'Ah.01g016830' => 'amhyb', 'Ah.14g088000' => 'amhyb', 'AL1G22980' => 'aly', 'AL3G18990' => 'aly', 'AL4G22440' => 'aly', 'AL4G33180' => 'aly', 'AL5G22920' => 'aly', 'AL6G33660' => 'aly', 'AL8G20720' => 'aly', 'Aqoxy1G00935' => 'aox', 'Aqoxy1G02094' => 'aox', 'Aqoxy2G01239' => 'aox', 'Aqoxy4G01870' => 'aox', 'Aqoxy7G00450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.36ZVTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71EM27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5D6C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH3WRE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3NCM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RIM768' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YB5YRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z36GDV' => 'arhy', 'AT1G08250' => 'ath', 'AT1G11790' => 'ath', 'AT2G27820' => 'ath', 'AT3G07630' => 'ath', 'AT3G44720' => 'ath', 'AT5G22630' => 'ath', 'ATR0693G304' => 'atr', 'ATR0794G109' => 'atr', 'ATR0820G120' => 'atr', 'ATR1159G064' => 'atr', 'Atru.chr10.2239' => 'acertr', 'Atru.chr3.3371' => 'acertr', 'Atru.chr6.3202' => 'acertr', 'AUR62006499' => 'cqu', 'AUR62012718' => 'cqu', 'AUR62021938' => 'cqu', 'AUR62023932' => 'cqu', 'AUR62025034' => 'cqu', 'AUR62025035' => 'cqu', 'AUR62038307' => 'cqu', 'AUR62043466' => 'cqu', 'BcaB02g10748' => 'bca', 'BcaB03g13231' => 'bca', 'BcaB03g14689' => 'bca', 'BcaB05g22716' => 'bca', 'BcaB06g28172' => 'bca', 'BcaB08g36413' => 'bca', 'BcaC01g02186' => 'bca', 'BcaC01g04272' => 'bca', 'BcaC02g08080' => 'bca', 'BcaC02g08227' => 'bca', 'BcaC03g13901' => 'bca', 'BcaC04g19593' => 'bca', 'BcaC04g20874' => 'bca', 'BcaC05g29557' => 'bca', 'BcaC06g35505' => 'bca', 'BcaC07g41954' => 'bca', 'BcaC07g41955' => 'bca', 'BcaC07g41956' => 'bca', 'BcaC07g42519' => 'bca', 'BcaC07g42520' => 'bca', 'BcaC07g42523' => 'bca', 'BcaC07g42524' => 'bca', 'BcaC07g42525' => 'bca', 'BcaC08g47480' => 'bca', 'BcaC08g47481' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00530' => 'bna', 'BolC2t07178H' => 'bol', 'BolC3t16567H' => 'bol', 'BolC4t27234H' => 'bol', 'BolC5t29728H' => 'bol', 'BolC5t34622H' => 'bol', 'BolC6t40321H' => 'bol', 'BolC7t42028H' => 'bol', 'BolC8t49125H' => 'bol', 'BolC8t52538H' => 'bol', 'BolC8t52539H' => 'bol', 'BolC9t56681H' => 'bol', 'BolC9t58266H' => 'bol', 'BolSC21t60294H' => 'bol', 'BraA02t05670Z' => 'bra', 'BraA03t12716Z' => 'bra', 'BraA04t17685Z' => 'bra', 'BraA05t22788Z' => 'bra', 'BraA06t24032Z' => 'bra', 'BraA06t25625Z' => 'bra', 'BraA07t27930Z' => 'bra', 'BraA08t35242Z' => 'bra', 'BraA09t38609Z' => 'bra', 'BraA10t43905Z' => 'bra', 'C02p11060' => 'bna', 'C03p42990' => 'bna', 'C03p67310' => 'bna', 'C04p56990' => 'bna', 'C04p58660' => 'bna', 'C05p09890' => 'bna', 'C05p59680' => 'bna', 'C06p19830' => 'bna', 'C06p53040' => 'bna', 'C07p15230' => 'bna', 'C08p50070' => 'bna', 'C08p50090' => 'bna', 'C09p38330' => 'bna', 'C09p53940' => 'bna', 'CAN.G1014.1' => 'can', 'CAN.G644.30' => 'can', 'CAN.G84.47' => 'can', 'CAN.G919.8' => 'can', 'CANSAT54G0113' => 'cansat', 'CANSAT54G1286' => 'cansat', 'CANSAT64G1020' => 'cansat', 'CARHR008080' => 'chi', 'CARHR008090' => 'chi', 'CARHR012130' => 'chi', 'CARHR038390' => 'chi', 'CARHR082330' => 'chi', 'CARHR120520' => 'chi', 'CARHR151470' => 'chi', 'CARHR190950' => 'chi', 'Carub.0001s0760' => 'cru', 'Carub.0001s1146' => 'cru', 'Carub.0003s0721' => 'cru', 'Carub.0004s0858' => 'cru', 'Carub.0005s1040' => 'cru', 'Carub.0006s2035' => 'cru', 'Carub.0015s0005' => 'cru', 'Ca_01607_v3' => 'car', 'Ca_01677_v3' => 'car', 'Ca_06087_v3' => 'car', 'Ca_19238_v3' => 'car', 'Ca_19373_v3' => 'car', 'Ca_21079_v3' => 'car', 'CBR_g54016' => 'cbr', 'CBR_g54018' => 'cbr', 'CBR_g54020' => 'cbr', 'Cc01_g09780' => 'ccan', 'Cc01_g11680' => 'ccan', 'Cc02_g15610' => 'ccan', 'Cc05_g04350' => 'ccan', 'Cc09_g01580' => 'ccan', 'CDE01G0795' => 'cde', 'CDE02G2024' => 'cde', 'CDE02G2260' => 'cde', 'CDE02G4561' => 'cde', 'CDE05G2733' => 'cde', 'CDE05G3422' => 'cde', 'CDE06G2003' => 'cde', 'CDE08G0576' => 'cde', 'CDE09G0048' => 'cde', 'CDE11G0805' => 'cde', 'Cfa003644' => 'cfa', 'Cfa006290' => 'cfa', 'Cfa010080' => 'cfa', 'Cfa011376' => 'cfa', 'Cfa011576' => 'cfa', 'Cfa011577' => 'cfa', 'Cfa014389' => 'cfa', 'Ciclev10006044m.g' => 'ccl', 'Ciclev10006954m.g' => 'ccl', 'Ciclev10015131m.g' => 'ccl', 'Ciclev10015580m.g' => 'ccl', 'Ciclev10028359m.g' => 'ccl', 'Ciclev10028573m.g' => 'ccl', 'CiPaw.03G159300' => 'cil', 'CiPaw.04G115100' => 'cil', 'CiPaw.09G092800' => 'cil', 'CiPaw.10G071800' => 'cil', 'CiPaw.13G105800' => 'cil', 'CiPaw.13G141000' => 'cil', 'CiPaw.14G103400' => 'cil', 'ClCG01G012700' => 'cla', 'ClCG01G012720' => 'cla', 'ClCG01G021920' => 'cla', 'ClCG02G008870' => 'cla', 'ClCG02G020840' => 'cla', 'ClCG02G021930' => 'cla', 'COL.COLO4_19302' => 'col', 'COL.COLO4_25262' => 'col', 'COL.COLO4_31788' => 'col', 'Cpa.g.c34684' => 'cpa', 'Cpa.g.c36520.1' => 'cpa', 'Cpa.g.c45626' => 'cpa', 'Cpa.g.sc121.17' => 'cpa', 'Cpa.g.sc13.22' => 'cpa', 'Cpa.g.sc87.88' => 'cpa', 'Cre06.g261800' => 'cre', 'CsaV3_1G014500' => 'csa', 'CsaV3_1G014510' => 'csa', 'CsaV3_2G034880' => 'csa', 'CsaV3_6G014760' => 'csa', 'CsaV3_6G021500' => 'csa', 'CsaV3_6G048980' => 'csa', 'CSS0002511' => 'camsi', 'CSS0007556' => 'camsi', 'CSS0008532' => 'camsi', 'CSS0009709' => 'camsi', 'CSS0010486' => 'camsi', 'CSS0016768' => 'camsi', 'CSS0023512' => 'camsi', 'CSS0025341' => 'camsi', 'CSS0027999' => 'camsi', 'CSS0028944' => 'camsi', 'CSS0032292' => 'camsi', 'CSS0032464' => 'camsi', 'CSS0037153' => 'camsi', 'CSS0039256' => 'camsi', 'CSS0048392' => 'camsi', 'CSS0050458' => 'camsi', 'DCAR_004224' => 'dca', 'DCAR_006147' => 'dca', 'DCAR_006465' => 'dca', 'DCAR_008159' => 'dca', 'DCAR_012164' => 'dca', 'DCAR_019764' => 'dca', 'Dinv05418' => 'din', 'Dinv10839' => 'din', 'Dinv12521' => 'din', 'Dinv13900' => 'din', 'Dinv29426' => 'din', 'Duzib150G0263' => 'dzi', 'Duzib168G1178' => 'dzi', 'Duzib168G1924' => 'dzi', 'Duzib170G0299' => 'dzi', 'Duzib170G0813' => 'dzi', 'Duzib235G1128' => 'dzi', 'Duzib248G1060' => 'dzi', 'ECA232G1910' => 'eca', 'ECA233G4621' => 'eca', 'ECA238G1216' => 'eca', 'ECA238G1784' => 'eca', 'ECA248G1242' => 'eca', 'EL10Ac8g20071' => 'bvu', 'EL10Ac9g21086' => 'bvu', 'EL10Ac9g22407' => 'bvu', 'EL10Ac9g22412' => 'bvu', 'Eucgr.A01119' => 'egr', 'Eucgr.E04043' => 'egr', 'Eucgr.J00428' => 'egr', 'Eucgr.J00958' => 'egr', 'FAN11G3091' => 'fan', 'FAN11G3651' => 'fan', 'FAN16G2566' => 'fan', 'FAN21G3155' => 'fan', 'FAN21G3400' => 'fan', 'FAN21G3543' => 'fan', 'FAN25G0234' => 'fan', 'FAN25G1422' => 'fan', 'FAN25G3392' => 'fan', 'FvH4_3g01940' => 'fve', 'FvH4_3g29870' => 'fve', 'FvH4_3g33680' => 'fve', 'Glyma.09G004200' => 'gma', 'Glyma.11G151288' => 'gma', 'Glyma.11G189100' => 'gma', 'Glyma.12G072500' => 'gma', 'Glyma.12G085500' => 'gma', 'Glyma.12G181800' => 'gma', 'Glyma.12G193000' => 'gma', 'Glyma.13G309300' => 'gma', 'Glyma.13G319000' => 'gma', 'Glyma.17G012600' => 'gma', 'Gohir.A06G148600' => 'ghi', 'Gohir.A07G115800' => 'ghi', 'Gohir.A08G003600' => 'ghi', 'Gohir.A09G093300' => 'ghi', 'Gohir.A09G105400' => 'ghi', 'Gohir.A09G105500' => 'ghi', 'Gohir.D06G154600' => 'ghi', 'Gohir.D07G120200' => 'ghi', 'Gohir.D08G013900' => 'ghi', 'Gohir.D09G093100' => 'ghi', 'Gohir.D09G102200' => 'ghi', 'Gohir.D09G102300' => 'ghi', 'Gorai.001G129400' => 'gra', 'Gorai.004G008200' => 'gra', 'Gorai.006G109800' => 'gra', 'Gorai.006G119500' => 'gra', 'Gorai.006G121300' => 'gra', 'Gorai.010G180700' => 'gra', 'GSVIVG01012716001' => 'vvi', 'GSVIVG01025118001' => 'vvi', 'GSVIVG01030439001' => 'vvi', 'GSVIVG01031397001' => 'vvi', 'HanXRQChr01g0004201' => 'han', 'HanXRQChr02g0054941' => 'han', 'HanXRQChr05g0141811' => 'han', 'HanXRQChr07g0197751' => 'han', 'HanXRQChr11g0346691' => 'han', 'HanXRQChr13g0396971' => 'han', 'HanXRQChr14g0432951' => 'han', 'HanXRQChr14g0452001' => 'han', 'HanXRQChr15g0496681' => 'han', 'HanXRQChr17g0557491' => 'han', 'HanXRQChr17g0557501' => 'han', 'Haze_06809' => 'cav', 'Haze_12852' => 'cav', 'Haze_15850' => 'cav', 'Haze_23446' => 'cav', 'Haze_23942' => 'cav', 'Haze_23943' => 'cav', 'Hma1.2p1_0091F.1_g046450' => 'hma', 'Hma1.2p1_0128F.1_g059910' => 'hma', 'Hma1.2p1_0249F.1_g102260' => 'hma', 'Hma1.2p1_0453F.1_g156190' => 'hma', 'Hma1.2p1_0695F.1_g204380' => 'hma', 'Hma1.2p1_0749F.1_g212650' => 'hma', 'Hma1.2p1_2156F.1_g315420' => 'hma', 'Hma1.2p1_2686F.1_g326940' => 'hma', 'HPP92_006428' => 'vpl', 'HPP92_012069' => 'vpl', 'HPP92_014129' => 'vpl', 'HPP92_014133' => 'vpl', 'HPP92_017315' => 'vpl', 'HPP92_026445' => 'vpl', 'HPP92_026446' => 'vpl', 'Hund00774' => 'sun', 'Hund07682' => 'sun', 'Hund21413' => 'sun', 'Hund23462' => 'sun', 'Hund23463' => 'sun', 'Lalb_Chr03g0027911' => 'lal', 'Lalb_Chr13g0304271' => 'lal', 'Lalb_Chr19g0137471' => 'lal', 'Lalb_Chr22g0350651' => 'lal', 'Lalb_Chr24g0395151' => 'lal', 'Lj1A1231T40' => 'lonja', 'Lj1A221T48' => 'lonja', 'Lj1C924T12' => 'lonja', 'Lj2C993G6' => 'lonja', 'Lj3g0005790' => 'lja', 'Lj3g0015432' => 'lja', 'Lj3g0017722' => 'lja', 'Lj3g0018497' => 'lja', 'Lj4g0025071' => 'lja', 'Lsat_1_v5_gn_1_129680' => 'lsa', 'Lsat_1_v5_gn_2_25321' => 'lsa', 'Lsat_1_v5_gn_2_95461' => 'lsa', 'Lsat_1_v5_gn_4_159620' => 'lsa', 'Lsat_1_v5_gn_6_41301' => 'lsa', 'Lsat_1_v5_gn_6_74660' => 'lsa', 'Lsat_1_v5_gn_7_11520' => 'lsa', 'Lsat_1_v5_gn_9_67680' => 'lsa', 'Manes.04G008300' => 'mes', 'Manes.04G008400' => 'mes', 'Manes.04G026500' => 'mes', 'Manes.10G135300' => 'mes', 'Manes.11G157300' => 'mes', 'Manes.12G074000' => 'mes', 'Manes.16G006200' => 'mes', 'Manes.17G026400' => 'mes', 'Mapoly0024s0086' => 'mpo', 'Mapoly0024s0087' => 'mpo', 'Mapoly0071s0057' => 'mpo', 'Mapoly0204s0012' => 'mpo', 'MBI04_g37681_MAGBIO' => 'mbi', 'MBI05_g17779_MAGBIO' => 'mbi', 'MBI12_g31184_MAGBIO' => 'mbi', 'MBI17_g11083_MAGBIO' => 'mbi', 'MBI18_g03883_MAGBIO' => 'mbi', 'MBI18_g28940_MAGBIO' => 'mbi', 'MCO01G690' => 'mco', 'MD03G1109900' => 'mdo', 'MD03G1134800' => 'mdo', 'MD05G1348000' => 'mdo', 'MD10G1322400' => 'mdo', 'MD11G1123300' => 'mdo', 'MD11G1157600' => 'mdo', 'Medtr2g084875' => 'mtr', 'Medtr2g088130' => 'mtr', 'Medtr4g055310' => 'mtr', 'Medtr4g061070' => 'mtr', 'Medtr4g132250' => 'mtr', 'MELO3C004795.2' => 'cme', 'MELO3C004797.2' => 'cme', 'MELO3C007396.2' => 'cme', 'MELO3C019277.2' => 'cme', 'MELO3C021449.2' => 'cme', 'MELO3C025736.2' => 'cme', 'Migut.D02175' => 'egut', 'Migut.H01573' => 'egut', 'Migut.M01327' => 'egut', 'Migut.N02513' => 'egut', 'MSTRG.14638' => 'ama', 'MSTRG.18632' => 'ama', 'MSTRG.7203' => 'ama', 'Nitab4.5_0000533g0140' => 'nta', 'Nitab4.5_0000888g0150' => 'nta', 'Nitab4.5_0001453g0040' => 'nta', 'Nitab4.5_0002827g0090' => 'nta', 'Nitab4.5_0003082g0040' => 'nta', 'Nitab4.5_0007799g0040' => 'nta', 'Nitab4.5_0008983g0010' => 'nta', 'Nitab4.5_0009017g0020' => 'nta', 'Nn1g02132' => 'nnu', 'Nn1g03492' => 'nnu', 'Nn1g03493' => 'nnu', 'Nn1g03494' => 'nnu', 'Nn1g07164' => 'nnu', 'Nn1g07291' => 'nnu', 'Nn2g10655' => 'nnu', 'Nn2g11652' => 'nnu', 'Nn2g14008' => 'nnu', 'Nn3g17476' => 'nnu', 'Nn3g17477' => 'nnu', 'Nn4g22370' => 'nnu', 'Nn4g25255' => 'nnu', 'Nn5g27755' => 'nnu', 'Nn6g34260' => 'nnu', 'Nn6g35041' => 'nnu', 'Oeu005924.1' => 'oeu', 'Oeu008383.1' => 'oeu', 'Oeu014928.1' => 'oeu', 'Oeu019889.1' => 'oeu', 'Oeu022271.1' => 'oeu', 'Oeu025271.1' => 'oeu', 'Oeu036302.1' => 'oeu', 'Oeu044100.1' => 'oeu', 'Os01g0528300' => 'osa', 'Os03g0286200' => 'osa', 'Os04g0406600' => 'osa', 'Os07g0512000' => 'osa', 'Os07g0694600' => 'osa', 'Os08g0411000' => 'osa', 'Os09g0565700' => 'osa', 'Os09g0566050' => 'osa', 'Os10g0523700' => 'osa', 'Peaxi162Scf00002g00514' => 'pax', 'Peaxi162Scf00047g01817' => 'pax', 'Peaxi162Scf00114g00001' => 'pax', 'Peaxi162Scf00147g00613' => 'pax', 'Peaxi162Scf00389g00425' => 'pax', 'PGR042G1139' => 'pgr', 'PGR042G3273' => 'pgr', 'PGR102G2180' => 'pgr', 'PGR119G0234' => 'pgr', 'PGR119G0668' => 'pgr', 'PGSC0003DMG400007122' => 'stu', 'PGSC0003DMG400016478' => 'stu', 'PGSC0003DMG400025374' => 'stu', 'PGSC0003DMG400026536' => 'stu', 'Phvul.003G079600' => 'pvu', 'Phvul.005G115600' => 'pvu', 'Phvul.005G127100' => 'pvu', 'Phvul.006G149500' => 'pvu', 'Phvul.006G149600' => 'pvu', 'Phvul.011G071800' => 'pvu', 'Phvul.011G090400' => 'pvu', 'Potri.004G013400' => 'ptr', 'Potri.004G188100' => 'ptr', 'Potri.008G195500' => 'ptr', 'Potri.009G148800' => 'ptr', 'Potri.011G004700' => 'ptr', 'Pp3c17_22810' => 'ppa', 'Pp3c18_4480' => 'ppa', 'Pp3c19_13030' => 'ppa', 'Pp3c1_33620' => 'ppa', 'Pp3c2_9380' => 'ppa', 'PRCOL_00001023' => 'pco', 'Prupe.3G216300' => 'ppe', 'Prupe.4G019500' => 'ppe', 'Prupe.6G092500' => 'ppe', 'Prupe.6G119200' => 'ppe', 'Psat0s1945g0080' => 'psa', 'Psat0s4167g0040' => 'psa', 'Psat1g185800' => 'psa', 'Psat4g006440' => 'psa', 'Psat4g006480' => 'psa', 'Psat4g168120' => 'psa', 'Psat5g255680' => 'psa', 'Psat5g261760' => 'psa', 'Psat7g222120' => 'psa', 'PSO063G7252' => 'pso', 'PSO170G4778' => 'pso', 'PSO210G2249' => 'pso', 'PSO339G2411' => 'pso', 'PSO339G2457' => 'pso', 'PSO339G2854' => 'pso', 'PSO339G4288' => 'pso', 'PSO339G4615' => 'pso', 'PSO384G2796' => 'pso', 'PSO384G2940' => 'pso', 'PSO384G4227' => 'pso', 'PSO478G1425' => 'pso', 'PSO541G3863' => 'pso', 'PSO675G0507' => 'pso', 'PSO782G0338' => 'pso', 'PSO832G0644' => 'pso', 'QL01p013664' => 'qlo', 'QL01p036598' => 'qlo', 'QL05p072984' => 'qlo', 'QL08p005768' => 'qlo', 'QL08p032743' => 'qlo', 'QL93p0073_0439' => 'qlo', 'QL93p0073_0444' => 'qlo', 'RcHm_v2.0_Chr5g0002851' => 'rch', 'RcHm_v2.0_Chr5g0055201' => 'rch', 'RcHm_v2.0_Chr5g0061191' => 'rch', 'RcHm_v2.0_Chr7g0203231' => 'rch', 'Rhsim01G0208100' => 'rsi', 'Rhsim01G0208200' => 'rsi', 'Rhsim02G0106500' => 'rsi', 'Rhsim03G0107900' => 'rsi', 'Rhsim06G0163400' => 'rsi', 'Rhsim13G0105200' => 'rsi', 'Sabra04G0006300' => 'sbr', 'Sabra04G0127000' => 'sbr', 'Sabra08G0148700' => 'sbr', 'Sabra09G0117400' => 'sbr', 'SalBow1G3326' => 'sbo', 'SalBow3G3228' => 'sbo', 'SalBow6G1634' => 'sbo', 'SalBow6G3603' => 'sbo', 'SalBow6G5266' => 'sbo', 'SalBow7G2265' => 'sbo', 'SalBow8G0850' => 'sbo', 'SalBow8G2592' => 'sbo', 'Sc05g0009240' => 'sci', 'Sc12g0002300' => 'sci', 'Sc21g0000100' => 'sci', 'Sc21g0004720' => 'sci', 'Sed0002949' => 'sed', 'Sed0004114' => 'sed', 'Sed0004306' => 'sed', 'Sed0006172' => 'sed', 'Sed0008413' => 'sed', 'Sed0013809' => 'sed', 'Sed0019556' => 'sed', 'SEGI_03570' => 'sgi', 'SEGI_07859' => 'sgi', 'SEGI_15042' => 'sgi', 'SEGI_16263' => 'sgi', 'SEGI_16552' => 'sgi', 'SEGI_24331' => 'sgi', 'SEGI_27316' => 'sgi', 'SEGI_29521' => 'sgi', 'SEGI_41342' => 'sgi', 'SGA_v2.0_scaffold27G11617' => 'sas', 'SGA_v2.0_scaffold316G48428' => 'sas', 'SGA_v2.0_scaffold49G18261' => 'sas', 'SGA_v2.0_scaffold7G03831' => 'sas', 'SGA_v2.0_scaffold93G28359' => 'sas', 'SHI02210' => 'shi', 'SHI06028' => 'shi', 'SHI06321' => 'shi', 'SMO111G0012' => 'smo', 'SMO228G0080' => 'smo', 'SMO356G0756' => 'smo', 'Solyc02g080620.3' => 'sly', 'Solyc06g074530.1' => 'sly', 'Solyc11g066890.1' => 'sly', 'Solyc11g072520.3' => 'sly', 'Sopen02g025330' => 'spe', 'Sopen06g031000' => 'spe', 'Sopen09g008240' => 'spe', 'Sopen09g025210' => 'spe', 'Sopen11g026600' => 'spe', 'Sopen11g030170' => 'spe', 'Sp1g10420' => 'spa', 'Sp3g06570' => 'spa', 'Sp4g10660' => 'spa', 'Sp5g16460' => 'spa', 'Sp6g22710' => 'spa', 'TAR365G0112' => 'tar', 'TAR369G0717' => 'tar', 'TAR374G0976' => 'tar', 'TAR623G1128' => 'tar', 'TAR626G1937' => 'tar', 'TAR627G0123' => 'tar', 'TAR628G0305' => 'tar', 'TAR636G1176' => 'tar', 'TAR636G2442' => 'tar', 'THA.LOC104800556' => 'tha', 'THA.LOC104809501' => 'tha', 'THA.LOC104815126' => 'tha', 'THA.LOC104815732' => 'tha', 'THA.LOC104823528' => 'tha', 'Thecc.02G365600' => 'tca', 'Thecc.06G222300' => 'tca', 'Thecc.09G261800' => 'tca', 'Thecc.09G291400' => 'tca', 'Thhalv10003028m.g' => 'esa', 'Thhalv10007886m.g' => 'esa', 'Thhalv10016085m.g' => 'esa', 'Thhalv10016681m.g' => 'esa', 'Thhalv10020951m.g' => 'esa', 'TPR.G15598' => 'tpr', 'TPR.G29305' => 'tpr', 'TPR.G32395' => 'tpr', 'TPR.G36998' => 'tpr', 'TPR.G4227' => 'tpr', 'TWI18G1433' => 'twi', 'TWI31G0755' => 'twi', 'TWI38G0912' => 'twi', 'TWI75G1097' => 'twi', 'TWI75G1619' => 'twi', 'TWI79G1336' => 'twi', 'unitig_0.g943' => 'ugi', 'unitig_0.g944' => 'ugi', 'unitig_22.g6646' => 'ugi', 'unitig_37.g12681' => 'ugi', 'unitig_8.g3290' => 'ugi', 'vmacro03278' => 'vma', 'vmacro12197' => 'vma', 'vmacro14478' => 'vma', 'vmacro15787' => 'vma', 'vmacro15789' => 'vma', 'vmacro15790' => 'vma', 'vmacro15806' => 'vma', 'vmacro22907' => 'vma', 'vmacro22908' => 'vma', 'vmacro22909' => 'vma', 'vmacro23108' => 'vma', 'VMungo0540G0540' => 'vmu', 'VMungo0540G2468' => 'vmu', 'VMungo1080G0390' => 'vmu', 'VMungo1080G1165' => 'vmu', 'VMungo1127G0170' => 'vmu', 'VMungo1127G2099' => 'vmu', 'VMungo1215G3013' => 'vmu', 'Zm00001eb013110' => 'zma', 'Zm00001eb084260' => 'zma', 'Zm00001eb096110' => 'zma', 'Zm00001eb217510' => 'zma', 'Zm00001eb322550' => 'zma', 'Zm00001eb390770' => 'zma', 'Zm00001eb397170' => 'zma', 'Zm00001eb404610' => 'zma', 'Zm00001eb421790' => 'zma' ) $gf_id = 'HOM05D000911' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000911' ) $data_identifier = 'HOM05D000911' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 16, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 5, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 6, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 8, 'nnu' => (int) 16, 'oeu' => (int) 8, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 5, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 16, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421790' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000911', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27780' => 'bna', 'A03p35380' => 'bna', 'A04p21160' => 'bna', 'A05p40570' => 'bna', 'A06p26900' => 'bna', 'A08p33230' => 'bna', 'A09p65960' => 'bna', 'A10p18290' => 'bna', 'Aa31LG1G12990' => 'aar', 'Aa31LG1G2980' => 'aar', 'Aa31LG4G14320' => 'aar', 'Aa31LG7G11800' => 'aar', 'Aa31sc36G50' => 'aar', 'Aa31sc36G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3721' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5459' => 'aag', 'Actinidia03028' => 'ach', 'Actinidia03753' => 'ach', 'Actinidia04187' => 'ach', 'Actinidia05509' => 'ach', 'Actinidia24180' => 'ach', 'Actinidia26906' => 'ach', 'Actinidia37097' => 'ach', 'Actinidia38249' => 'ach', 'Ah.01g003470' => 'amhyb', 'Ah.01g004580' => 'amhyb', 'Ah.01g014850' => 'amhyb', 'Ah.01g016830' => 'amhyb', 'Ah.14g088000' => 'amhyb', 'AL1G22980' => 'aly', 'AL3G18990' => 'aly', 'AL4G22440' => 'aly', 'AL4G33180' => 'aly', 'AL5G22920' => 'aly', 'AL6G33660' => 'aly', 'AL8G20720' => 'aly', 'Aqoxy1G00935' => 'aox', 'Aqoxy1G02094' => 'aox', 'Aqoxy2G01239' => 'aox', 'Aqoxy4G01870' => 'aox', 'Aqoxy7G00450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.36ZVTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71EM27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5D6C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH3WRE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3NCM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RIM768' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YB5YRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z36GDV' => 'arhy', 'AT1G08250' => 'ath', 'AT1G11790' => 'ath', 'AT2G27820' => 'ath', 'AT3G07630' => 'ath', 'AT3G44720' => 'ath', 'AT5G22630' => 'ath', 'ATR0693G304' => 'atr', 'ATR0794G109' => 'atr', 'ATR0820G120' => 'atr', 'ATR1159G064' => 'atr', 'Atru.chr10.2239' => 'acertr', 'Atru.chr3.3371' => 'acertr', 'Atru.chr6.3202' => 'acertr', 'AUR62006499' => 'cqu', 'AUR62012718' => 'cqu', 'AUR62021938' => 'cqu', 'AUR62023932' => 'cqu', 'AUR62025034' => 'cqu', 'AUR62025035' => 'cqu', 'AUR62038307' => 'cqu', 'AUR62043466' => 'cqu', 'BcaB02g10748' => 'bca', 'BcaB03g13231' => 'bca', 'BcaB03g14689' => 'bca', 'BcaB05g22716' => 'bca', 'BcaB06g28172' => 'bca', 'BcaB08g36413' => 'bca', 'BcaC01g02186' => 'bca', 'BcaC01g04272' => 'bca', 'BcaC02g08080' => 'bca', 'BcaC02g08227' => 'bca', 'BcaC03g13901' => 'bca', 'BcaC04g19593' => 'bca', 'BcaC04g20874' => 'bca', 'BcaC05g29557' => 'bca', 'BcaC06g35505' => 'bca', 'BcaC07g41954' => 'bca', 'BcaC07g41955' => 'bca', 'BcaC07g41956' => 'bca', 'BcaC07g42519' => 'bca', 'BcaC07g42520' => 'bca', 'BcaC07g42523' => 'bca', 'BcaC07g42524' => 'bca', 'BcaC07g42525' => 'bca', 'BcaC08g47480' => 'bca', 'BcaC08g47481' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00530' => 'bna', 'BolC2t07178H' => 'bol', 'BolC3t16567H' => 'bol', 'BolC4t27234H' => 'bol', 'BolC5t29728H' => 'bol', 'BolC5t34622H' => 'bol', 'BolC6t40321H' => 'bol', 'BolC7t42028H' => 'bol', 'BolC8t49125H' => 'bol', 'BolC8t52538H' => 'bol', 'BolC8t52539H' => 'bol', 'BolC9t56681H' => 'bol', 'BolC9t58266H' => 'bol', 'BolSC21t60294H' => 'bol', 'BraA02t05670Z' => 'bra', 'BraA03t12716Z' => 'bra', 'BraA04t17685Z' => 'bra', 'BraA05t22788Z' => 'bra', 'BraA06t24032Z' => 'bra', 'BraA06t25625Z' => 'bra', 'BraA07t27930Z' => 'bra', 'BraA08t35242Z' => 'bra', 'BraA09t38609Z' => 'bra', 'BraA10t43905Z' => 'bra', 'C02p11060' => 'bna', 'C03p42990' => 'bna', 'C03p67310' => 'bna', 'C04p56990' => 'bna', 'C04p58660' => 'bna', 'C05p09890' => 'bna', 'C05p59680' => 'bna', 'C06p19830' => 'bna', 'C06p53040' => 'bna', 'C07p15230' => 'bna', 'C08p50070' => 'bna', 'C08p50090' => 'bna', 'C09p38330' => 'bna', 'C09p53940' => 'bna', 'CAN.G1014.1' => 'can', 'CAN.G644.30' => 'can', 'CAN.G84.47' => 'can', 'CAN.G919.8' => 'can', 'CANSAT54G0113' => 'cansat', 'CANSAT54G1286' => 'cansat', 'CANSAT64G1020' => 'cansat', 'CARHR008080' => 'chi', 'CARHR008090' => 'chi', 'CARHR012130' => 'chi', 'CARHR038390' => 'chi', 'CARHR082330' => 'chi', 'CARHR120520' => 'chi', 'CARHR151470' => 'chi', 'CARHR190950' => 'chi', 'Carub.0001s0760' => 'cru', 'Carub.0001s1146' => 'cru', 'Carub.0003s0721' => 'cru', 'Carub.0004s0858' => 'cru', 'Carub.0005s1040' => 'cru', 'Carub.0006s2035' => 'cru', 'Carub.0015s0005' => 'cru', 'Ca_01607_v3' => 'car', 'Ca_01677_v3' => 'car', 'Ca_06087_v3' => 'car', 'Ca_19238_v3' => 'car', 'Ca_19373_v3' => 'car', 'Ca_21079_v3' => 'car', 'CBR_g54016' => 'cbr', 'CBR_g54018' => 'cbr', 'CBR_g54020' => 'cbr', 'Cc01_g09780' => 'ccan', 'Cc01_g11680' => 'ccan', 'Cc02_g15610' => 'ccan', 'Cc05_g04350' => 'ccan', 'Cc09_g01580' => 'ccan', 'CDE01G0795' => 'cde', 'CDE02G2024' => 'cde', 'CDE02G2260' => 'cde', 'CDE02G4561' => 'cde', 'CDE05G2733' => 'cde', 'CDE05G3422' => 'cde', 'CDE06G2003' => 'cde', 'CDE08G0576' => 'cde', 'CDE09G0048' => 'cde', 'CDE11G0805' => 'cde', 'Cfa003644' => 'cfa', 'Cfa006290' => 'cfa', 'Cfa010080' => 'cfa', 'Cfa011376' => 'cfa', 'Cfa011576' => 'cfa', 'Cfa011577' => 'cfa', 'Cfa014389' => 'cfa', 'Ciclev10006044m.g' => 'ccl', 'Ciclev10006954m.g' => 'ccl', 'Ciclev10015131m.g' => 'ccl', 'Ciclev10015580m.g' => 'ccl', 'Ciclev10028359m.g' => 'ccl', 'Ciclev10028573m.g' => 'ccl', 'CiPaw.03G159300' => 'cil', 'CiPaw.04G115100' => 'cil', 'CiPaw.09G092800' => 'cil', 'CiPaw.10G071800' => 'cil', 'CiPaw.13G105800' => 'cil', 'CiPaw.13G141000' => 'cil', 'CiPaw.14G103400' => 'cil', 'ClCG01G012700' => 'cla', 'ClCG01G012720' => 'cla', 'ClCG01G021920' => 'cla', 'ClCG02G008870' => 'cla', 'ClCG02G020840' => 'cla', 'ClCG02G021930' => 'cla', 'COL.COLO4_19302' => 'col', 'COL.COLO4_25262' => 'col', 'COL.COLO4_31788' => 'col', 'Cpa.g.c34684' => 'cpa', 'Cpa.g.c36520.1' => 'cpa', 'Cpa.g.c45626' => 'cpa', 'Cpa.g.sc121.17' => 'cpa', 'Cpa.g.sc13.22' => 'cpa', 'Cpa.g.sc87.88' => 'cpa', 'Cre06.g261800' => 'cre', 'CsaV3_1G014500' => 'csa', 'CsaV3_1G014510' => 'csa', 'CsaV3_2G034880' => 'csa', 'CsaV3_6G014760' => 'csa', 'CsaV3_6G021500' => 'csa', 'CsaV3_6G048980' => 'csa', 'CSS0002511' => 'camsi', 'CSS0007556' => 'camsi', 'CSS0008532' => 'camsi', 'CSS0009709' => 'camsi', 'CSS0010486' => 'camsi', 'CSS0016768' => 'camsi', 'CSS0023512' => 'camsi', 'CSS0025341' => 'camsi', 'CSS0027999' => 'camsi', 'CSS0028944' => 'camsi', 'CSS0032292' => 'camsi', 'CSS0032464' => 'camsi', 'CSS0037153' => 'camsi', 'CSS0039256' => 'camsi', 'CSS0048392' => 'camsi', 'CSS0050458' => 'camsi', 'DCAR_004224' => 'dca', 'DCAR_006147' => 'dca', 'DCAR_006465' => 'dca', 'DCAR_008159' => 'dca', 'DCAR_012164' => 'dca', 'DCAR_019764' => 'dca', 'Dinv05418' => 'din', 'Dinv10839' => 'din', 'Dinv12521' => 'din', 'Dinv13900' => 'din', 'Dinv29426' => 'din', 'Duzib150G0263' => 'dzi', 'Duzib168G1178' => 'dzi', 'Duzib168G1924' => 'dzi', 'Duzib170G0299' => 'dzi', 'Duzib170G0813' => 'dzi', 'Duzib235G1128' => 'dzi', 'Duzib248G1060' => 'dzi', 'ECA232G1910' => 'eca', 'ECA233G4621' => 'eca', 'ECA238G1216' => 'eca', 'ECA238G1784' => 'eca', 'ECA248G1242' => 'eca', 'EL10Ac8g20071' => 'bvu', 'EL10Ac9g21086' => 'bvu', 'EL10Ac9g22407' => 'bvu', 'EL10Ac9g22412' => 'bvu', 'Eucgr.A01119' => 'egr', 'Eucgr.E04043' => 'egr', 'Eucgr.J00428' => 'egr', 'Eucgr.J00958' => 'egr', 'FAN11G3091' => 'fan', 'FAN11G3651' => 'fan', 'FAN16G2566' => 'fan', 'FAN21G3155' => 'fan', 'FAN21G3400' => 'fan', 'FAN21G3543' => 'fan', 'FAN25G0234' => 'fan', 'FAN25G1422' => 'fan', 'FAN25G3392' => 'fan', 'FvH4_3g01940' => 'fve', 'FvH4_3g29870' => 'fve', 'FvH4_3g33680' => 'fve', 'Glyma.09G004200' => 'gma', 'Glyma.11G151288' => 'gma', 'Glyma.11G189100' => 'gma', 'Glyma.12G072500' => 'gma', 'Glyma.12G085500' => 'gma', 'Glyma.12G181800' => 'gma', 'Glyma.12G193000' => 'gma', 'Glyma.13G309300' => 'gma', 'Glyma.13G319000' => 'gma', 'Glyma.17G012600' => 'gma', 'Gohir.A06G148600' => 'ghi', 'Gohir.A07G115800' => 'ghi', 'Gohir.A08G003600' => 'ghi', 'Gohir.A09G093300' => 'ghi', 'Gohir.A09G105400' => 'ghi', 'Gohir.A09G105500' => 'ghi', 'Gohir.D06G154600' => 'ghi', 'Gohir.D07G120200' => 'ghi', 'Gohir.D08G013900' => 'ghi', 'Gohir.D09G093100' => 'ghi', 'Gohir.D09G102200' => 'ghi', 'Gohir.D09G102300' => 'ghi', 'Gorai.001G129400' => 'gra', 'Gorai.004G008200' => 'gra', 'Gorai.006G109800' => 'gra', 'Gorai.006G119500' => 'gra', 'Gorai.006G121300' => 'gra', 'Gorai.010G180700' => 'gra', 'GSVIVG01012716001' => 'vvi', 'GSVIVG01025118001' => 'vvi', 'GSVIVG01030439001' => 'vvi', 'GSVIVG01031397001' => 'vvi', 'HanXRQChr01g0004201' => 'han', 'HanXRQChr02g0054941' => 'han', 'HanXRQChr05g0141811' => 'han', 'HanXRQChr07g0197751' => 'han', 'HanXRQChr11g0346691' => 'han', 'HanXRQChr13g0396971' => 'han', 'HanXRQChr14g0432951' => 'han', 'HanXRQChr14g0452001' => 'han', 'HanXRQChr15g0496681' => 'han', 'HanXRQChr17g0557491' => 'han', 'HanXRQChr17g0557501' => 'han', 'Haze_06809' => 'cav', 'Haze_12852' => 'cav', 'Haze_15850' => 'cav', 'Haze_23446' => 'cav', 'Haze_23942' => 'cav', 'Haze_23943' => 'cav', 'Hma1.2p1_0091F.1_g046450' => 'hma', 'Hma1.2p1_0128F.1_g059910' => 'hma', 'Hma1.2p1_0249F.1_g102260' => 'hma', 'Hma1.2p1_0453F.1_g156190' => 'hma', 'Hma1.2p1_0695F.1_g204380' => 'hma', 'Hma1.2p1_0749F.1_g212650' => 'hma', 'Hma1.2p1_2156F.1_g315420' => 'hma', 'Hma1.2p1_2686F.1_g326940' => 'hma', 'HPP92_006428' => 'vpl', 'HPP92_012069' => 'vpl', 'HPP92_014129' => 'vpl', 'HPP92_014133' => 'vpl', 'HPP92_017315' => 'vpl', 'HPP92_026445' => 'vpl', 'HPP92_026446' => 'vpl', 'Hund00774' => 'sun', 'Hund07682' => 'sun', 'Hund21413' => 'sun', 'Hund23462' => 'sun', 'Hund23463' => 'sun', 'Lalb_Chr03g0027911' => 'lal', 'Lalb_Chr13g0304271' => 'lal', 'Lalb_Chr19g0137471' => 'lal', 'Lalb_Chr22g0350651' => 'lal', 'Lalb_Chr24g0395151' => 'lal', 'Lj1A1231T40' => 'lonja', 'Lj1A221T48' => 'lonja', 'Lj1C924T12' => 'lonja', 'Lj2C993G6' => 'lonja', 'Lj3g0005790' => 'lja', 'Lj3g0015432' => 'lja', 'Lj3g0017722' => 'lja', 'Lj3g0018497' => 'lja', 'Lj4g0025071' => 'lja', 'Lsat_1_v5_gn_1_129680' => 'lsa', 'Lsat_1_v5_gn_2_25321' => 'lsa', 'Lsat_1_v5_gn_2_95461' => 'lsa', 'Lsat_1_v5_gn_4_159620' => 'lsa', 'Lsat_1_v5_gn_6_41301' => 'lsa', 'Lsat_1_v5_gn_6_74660' => 'lsa', 'Lsat_1_v5_gn_7_11520' => 'lsa', 'Lsat_1_v5_gn_9_67680' => 'lsa', 'Manes.04G008300' => 'mes', 'Manes.04G008400' => 'mes', 'Manes.04G026500' => 'mes', 'Manes.10G135300' => 'mes', 'Manes.11G157300' => 'mes', 'Manes.12G074000' => 'mes', 'Manes.16G006200' => 'mes', 'Manes.17G026400' => 'mes', 'Mapoly0024s0086' => 'mpo', 'Mapoly0024s0087' => 'mpo', 'Mapoly0071s0057' => 'mpo', 'Mapoly0204s0012' => 'mpo', 'MBI04_g37681_MAGBIO' => 'mbi', 'MBI05_g17779_MAGBIO' => 'mbi', 'MBI12_g31184_MAGBIO' => 'mbi', 'MBI17_g11083_MAGBIO' => 'mbi', 'MBI18_g03883_MAGBIO' => 'mbi', 'MBI18_g28940_MAGBIO' => 'mbi', 'MCO01G690' => 'mco', 'MD03G1109900' => 'mdo', 'MD03G1134800' => 'mdo', 'MD05G1348000' => 'mdo', 'MD10G1322400' => 'mdo', 'MD11G1123300' => 'mdo', 'MD11G1157600' => 'mdo', 'Medtr2g084875' => 'mtr', 'Medtr2g088130' => 'mtr', 'Medtr4g055310' => 'mtr', 'Medtr4g061070' => 'mtr', 'Medtr4g132250' => 'mtr', 'MELO3C004795.2' => 'cme', 'MELO3C004797.2' => 'cme', 'MELO3C007396.2' => 'cme', 'MELO3C019277.2' => 'cme', 'MELO3C021449.2' => 'cme', 'MELO3C025736.2' => 'cme', 'Migut.D02175' => 'egut', 'Migut.H01573' => 'egut', 'Migut.M01327' => 'egut', 'Migut.N02513' => 'egut', 'MSTRG.14638' => 'ama', 'MSTRG.18632' => 'ama', 'MSTRG.7203' => 'ama', 'Nitab4.5_0000533g0140' => 'nta', 'Nitab4.5_0000888g0150' => 'nta', 'Nitab4.5_0001453g0040' => 'nta', 'Nitab4.5_0002827g0090' => 'nta', 'Nitab4.5_0003082g0040' => 'nta', 'Nitab4.5_0007799g0040' => 'nta', 'Nitab4.5_0008983g0010' => 'nta', 'Nitab4.5_0009017g0020' => 'nta', 'Nn1g02132' => 'nnu', 'Nn1g03492' => 'nnu', 'Nn1g03493' => 'nnu', 'Nn1g03494' => 'nnu', 'Nn1g07164' => 'nnu', 'Nn1g07291' => 'nnu', 'Nn2g10655' => 'nnu', 'Nn2g11652' => 'nnu', 'Nn2g14008' => 'nnu', 'Nn3g17476' => 'nnu', 'Nn3g17477' => 'nnu', 'Nn4g22370' => 'nnu', 'Nn4g25255' => 'nnu', 'Nn5g27755' => 'nnu', 'Nn6g34260' => 'nnu', 'Nn6g35041' => 'nnu', 'Oeu005924.1' => 'oeu', 'Oeu008383.1' => 'oeu', 'Oeu014928.1' => 'oeu', 'Oeu019889.1' => 'oeu', 'Oeu022271.1' => 'oeu', 'Oeu025271.1' => 'oeu', 'Oeu036302.1' => 'oeu', 'Oeu044100.1' => 'oeu', 'Os01g0528300' => 'osa', 'Os03g0286200' => 'osa', 'Os04g0406600' => 'osa', 'Os07g0512000' => 'osa', 'Os07g0694600' => 'osa', 'Os08g0411000' => 'osa', 'Os09g0565700' => 'osa', 'Os09g0566050' => 'osa', 'Os10g0523700' => 'osa', 'Peaxi162Scf00002g00514' => 'pax', 'Peaxi162Scf00047g01817' => 'pax', 'Peaxi162Scf00114g00001' => 'pax', 'Peaxi162Scf00147g00613' => 'pax', 'Peaxi162Scf00389g00425' => 'pax', 'PGR042G1139' => 'pgr', 'PGR042G3273' => 'pgr', 'PGR102G2180' => 'pgr', 'PGR119G0234' => 'pgr', 'PGR119G0668' => 'pgr', 'PGSC0003DMG400007122' => 'stu', 'PGSC0003DMG400016478' => 'stu', 'PGSC0003DMG400025374' => 'stu', 'PGSC0003DMG400026536' => 'stu', 'Phvul.003G079600' => 'pvu', 'Phvul.005G115600' => 'pvu', 'Phvul.005G127100' => 'pvu', 'Phvul.006G149500' => 'pvu', 'Phvul.006G149600' => 'pvu', 'Phvul.011G071800' => 'pvu', 'Phvul.011G090400' => 'pvu', 'Potri.004G013400' => 'ptr', 'Potri.004G188100' => 'ptr', 'Potri.008G195500' => 'ptr', 'Potri.009G148800' => 'ptr', 'Potri.011G004700' => 'ptr', 'Pp3c17_22810' => 'ppa', 'Pp3c18_4480' => 'ppa', 'Pp3c19_13030' => 'ppa', 'Pp3c1_33620' => 'ppa', 'Pp3c2_9380' => 'ppa', 'PRCOL_00001023' => 'pco', 'Prupe.3G216300' => 'ppe', 'Prupe.4G019500' => 'ppe', 'Prupe.6G092500' => 'ppe', 'Prupe.6G119200' => 'ppe', 'Psat0s1945g0080' => 'psa', 'Psat0s4167g0040' => 'psa', 'Psat1g185800' => 'psa', 'Psat4g006440' => 'psa', 'Psat4g006480' => 'psa', 'Psat4g168120' => 'psa', 'Psat5g255680' => 'psa', 'Psat5g261760' => 'psa', 'Psat7g222120' => 'psa', 'PSO063G7252' => 'pso', 'PSO170G4778' => 'pso', 'PSO210G2249' => 'pso', 'PSO339G2411' => 'pso', 'PSO339G2457' => 'pso', 'PSO339G2854' => 'pso', 'PSO339G4288' => 'pso', 'PSO339G4615' => 'pso', 'PSO384G2796' => 'pso', 'PSO384G2940' => 'pso', 'PSO384G4227' => 'pso', 'PSO478G1425' => 'pso', 'PSO541G3863' => 'pso', 'PSO675G0507' => 'pso', 'PSO782G0338' => 'pso', 'PSO832G0644' => 'pso', 'QL01p013664' => 'qlo', 'QL01p036598' => 'qlo', 'QL05p072984' => 'qlo', 'QL08p005768' => 'qlo', 'QL08p032743' => 'qlo', 'QL93p0073_0439' => 'qlo', 'QL93p0073_0444' => 'qlo', 'RcHm_v2.0_Chr5g0002851' => 'rch', 'RcHm_v2.0_Chr5g0055201' => 'rch', 'RcHm_v2.0_Chr5g0061191' => 'rch', 'RcHm_v2.0_Chr7g0203231' => 'rch', 'Rhsim01G0208100' => 'rsi', 'Rhsim01G0208200' => 'rsi', 'Rhsim02G0106500' => 'rsi', 'Rhsim03G0107900' => 'rsi', 'Rhsim06G0163400' => 'rsi', 'Rhsim13G0105200' => 'rsi', 'Sabra04G0006300' => 'sbr', 'Sabra04G0127000' => 'sbr', 'Sabra08G0148700' => 'sbr', 'Sabra09G0117400' => 'sbr', 'SalBow1G3326' => 'sbo', 'SalBow3G3228' => 'sbo', 'SalBow6G1634' => 'sbo', 'SalBow6G3603' => 'sbo', 'SalBow6G5266' => 'sbo', 'SalBow7G2265' => 'sbo', 'SalBow8G0850' => 'sbo', 'SalBow8G2592' => 'sbo', 'Sc05g0009240' => 'sci', 'Sc12g0002300' => 'sci', 'Sc21g0000100' => 'sci', 'Sc21g0004720' => 'sci', 'Sed0002949' => 'sed', 'Sed0004114' => 'sed', 'Sed0004306' => 'sed', 'Sed0006172' => 'sed', 'Sed0008413' => 'sed', 'Sed0013809' => 'sed', 'Sed0019556' => 'sed', 'SEGI_03570' => 'sgi', 'SEGI_07859' => 'sgi', 'SEGI_15042' => 'sgi', 'SEGI_16263' => 'sgi', 'SEGI_16552' => 'sgi', 'SEGI_24331' => 'sgi', 'SEGI_27316' => 'sgi', 'SEGI_29521' => 'sgi', 'SEGI_41342' => 'sgi', 'SGA_v2.0_scaffold27G11617' => 'sas', 'SGA_v2.0_scaffold316G48428' => 'sas', 'SGA_v2.0_scaffold49G18261' => 'sas', 'SGA_v2.0_scaffold7G03831' => 'sas', 'SGA_v2.0_scaffold93G28359' => 'sas', 'SHI02210' => 'shi', 'SHI06028' => 'shi', 'SHI06321' => 'shi', 'SMO111G0012' => 'smo', 'SMO228G0080' => 'smo', 'SMO356G0756' => 'smo', 'Solyc02g080620.3' => 'sly', 'Solyc06g074530.1' => 'sly', 'Solyc11g066890.1' => 'sly', 'Solyc11g072520.3' => 'sly', 'Sopen02g025330' => 'spe', 'Sopen06g031000' => 'spe', 'Sopen09g008240' => 'spe', 'Sopen09g025210' => 'spe', 'Sopen11g026600' => 'spe', 'Sopen11g030170' => 'spe', 'Sp1g10420' => 'spa', 'Sp3g06570' => 'spa', 'Sp4g10660' => 'spa', 'Sp5g16460' => 'spa', 'Sp6g22710' => 'spa', 'TAR365G0112' => 'tar', 'TAR369G0717' => 'tar', 'TAR374G0976' => 'tar', 'TAR623G1128' => 'tar', 'TAR626G1937' => 'tar', 'TAR627G0123' => 'tar', 'TAR628G0305' => 'tar', 'TAR636G1176' => 'tar', 'TAR636G2442' => 'tar', 'THA.LOC104800556' => 'tha', 'THA.LOC104809501' => 'tha', 'THA.LOC104815126' => 'tha', 'THA.LOC104815732' => 'tha', 'THA.LOC104823528' => 'tha', 'Thecc.02G365600' => 'tca', 'Thecc.06G222300' => 'tca', 'Thecc.09G261800' => 'tca', 'Thecc.09G291400' => 'tca', 'Thhalv10003028m.g' => 'esa', 'Thhalv10007886m.g' => 'esa', 'Thhalv10016085m.g' => 'esa', 'Thhalv10016681m.g' => 'esa', 'Thhalv10020951m.g' => 'esa', 'TPR.G15598' => 'tpr', 'TPR.G29305' => 'tpr', 'TPR.G32395' => 'tpr', 'TPR.G36998' => 'tpr', 'TPR.G4227' => 'tpr', 'TWI18G1433' => 'twi', 'TWI31G0755' => 'twi', 'TWI38G0912' => 'twi', 'TWI75G1097' => 'twi', 'TWI75G1619' => 'twi', 'TWI79G1336' => 'twi', 'unitig_0.g943' => 'ugi', 'unitig_0.g944' => 'ugi', 'unitig_22.g6646' => 'ugi', 'unitig_37.g12681' => 'ugi', 'unitig_8.g3290' => 'ugi', 'vmacro03278' => 'vma', 'vmacro12197' => 'vma', 'vmacro14478' => 'vma', 'vmacro15787' => 'vma', 'vmacro15789' => 'vma', 'vmacro15790' => 'vma', 'vmacro15806' => 'vma', 'vmacro22907' => 'vma', 'vmacro22908' => 'vma', 'vmacro22909' => 'vma', 'vmacro23108' => 'vma', 'VMungo0540G0540' => 'vmu', 'VMungo0540G2468' => 'vmu', 'VMungo1080G0390' => 'vmu', 'VMungo1080G1165' => 'vmu', 'VMungo1127G0170' => 'vmu', 'VMungo1127G2099' => 'vmu', 'VMungo1215G3013' => 'vmu', 'Zm00001eb013110' => 'zma', 'Zm00001eb084260' => 'zma', 'Zm00001eb096110' => 'zma', 'Zm00001eb217510' => 'zma', 'Zm00001eb322550' => 'zma', 'Zm00001eb390770' => 'zma', 'Zm00001eb397170' => 'zma', 'Zm00001eb404610' => 'zma', 'Zm00001eb421790' => 'zma' ), 'gf_id' => 'HOM05D000911', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000911' ), 'data_identifier' => 'HOM05D000911', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000911', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27780' => 'bna', 'A03p35380' => 'bna', 'A04p21160' => 'bna', 'A05p40570' => 'bna', 'A06p26900' => 'bna', 'A08p33230' => 'bna', 'A09p65960' => 'bna', 'A10p18290' => 'bna', 'Aa31LG1G12990' => 'aar', 'Aa31LG1G2980' => 'aar', 'Aa31LG4G14320' => 'aar', 'Aa31LG7G11800' => 'aar', 'Aa31sc36G50' => 'aar', 'Aa31sc36G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3721' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5459' => 'aag', 'Actinidia03028' => 'ach', 'Actinidia03753' => 'ach', 'Actinidia04187' => 'ach', 'Actinidia05509' => 'ach', 'Actinidia24180' => 'ach', 'Actinidia26906' => 'ach', 'Actinidia37097' => 'ach', 'Actinidia38249' => 'ach', 'Ah.01g003470' => 'amhyb', 'Ah.01g004580' => 'amhyb', 'Ah.01g014850' => 'amhyb', 'Ah.01g016830' => 'amhyb', 'Ah.14g088000' => 'amhyb', 'AL1G22980' => 'aly', 'AL3G18990' => 'aly', 'AL4G22440' => 'aly', 'AL4G33180' => 'aly', 'AL5G22920' => 'aly', 'AL6G33660' => 'aly', 'AL8G20720' => 'aly', 'Aqoxy1G00935' => 'aox', 'Aqoxy1G02094' => 'aox', 'Aqoxy2G01239' => 'aox', 'Aqoxy4G01870' => 'aox', 'Aqoxy7G00450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.36ZVTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71EM27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5D6C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH3WRE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3NCM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RIM768' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YB5YRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z36GDV' => 'arhy', 'AT1G08250' => 'ath', 'AT1G11790' => 'ath', 'AT2G27820' => 'ath', 'AT3G07630' => 'ath', 'AT3G44720' => 'ath', 'AT5G22630' => 'ath', 'ATR0693G304' => 'atr', 'ATR0794G109' => 'atr', 'ATR0820G120' => 'atr', 'ATR1159G064' => 'atr', 'Atru.chr10.2239' => 'acertr', 'Atru.chr3.3371' => 'acertr', 'Atru.chr6.3202' => 'acertr', 'AUR62006499' => 'cqu', 'AUR62012718' => 'cqu', 'AUR62021938' => 'cqu', 'AUR62023932' => 'cqu', 'AUR62025034' => 'cqu', 'AUR62025035' => 'cqu', 'AUR62038307' => 'cqu', 'AUR62043466' => 'cqu', 'BcaB02g10748' => 'bca', 'BcaB03g13231' => 'bca', 'BcaB03g14689' => 'bca', 'BcaB05g22716' => 'bca', 'BcaB06g28172' => 'bca', 'BcaB08g36413' => 'bca', 'BcaC01g02186' => 'bca', 'BcaC01g04272' => 'bca', 'BcaC02g08080' => 'bca', 'BcaC02g08227' => 'bca', 'BcaC03g13901' => 'bca', 'BcaC04g19593' => 'bca', 'BcaC04g20874' => 'bca', 'BcaC05g29557' => 'bca', 'BcaC06g35505' => 'bca', 'BcaC07g41954' => 'bca', 'BcaC07g41955' => 'bca', 'BcaC07g41956' => 'bca', 'BcaC07g42519' => 'bca', 'BcaC07g42520' => 'bca', 'BcaC07g42523' => 'bca', 'BcaC07g42524' => 'bca', 'BcaC07g42525' => 'bca', 'BcaC08g47480' => 'bca', 'BcaC08g47481' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00530' => 'bna', 'BolC2t07178H' => 'bol', 'BolC3t16567H' => 'bol', 'BolC4t27234H' => 'bol', 'BolC5t29728H' => 'bol', 'BolC5t34622H' => 'bol', 'BolC6t40321H' => 'bol', 'BolC7t42028H' => 'bol', 'BolC8t49125H' => 'bol', 'BolC8t52538H' => 'bol', 'BolC8t52539H' => 'bol', 'BolC9t56681H' => 'bol', 'BolC9t58266H' => 'bol', 'BolSC21t60294H' => 'bol', 'BraA02t05670Z' => 'bra', 'BraA03t12716Z' => 'bra', 'BraA04t17685Z' => 'bra', 'BraA05t22788Z' => 'bra', 'BraA06t24032Z' => 'bra', 'BraA06t25625Z' => 'bra', 'BraA07t27930Z' => 'bra', 'BraA08t35242Z' => 'bra', 'BraA09t38609Z' => 'bra', 'BraA10t43905Z' => 'bra', 'C02p11060' => 'bna', 'C03p42990' => 'bna', 'C03p67310' => 'bna', 'C04p56990' => 'bna', 'C04p58660' => 'bna', 'C05p09890' => 'bna', 'C05p59680' => 'bna', 'C06p19830' => 'bna', 'C06p53040' => 'bna', 'C07p15230' => 'bna', 'C08p50070' => 'bna', 'C08p50090' => 'bna', 'C09p38330' => 'bna', 'C09p53940' => 'bna', 'CAN.G1014.1' => 'can', 'CAN.G644.30' => 'can', 'CAN.G84.47' => 'can', 'CAN.G919.8' => 'can', 'CANSAT54G0113' => 'cansat', 'CANSAT54G1286' => 'cansat', 'CANSAT64G1020' => 'cansat', 'CARHR008080' => 'chi', 'CARHR008090' => 'chi', 'CARHR012130' => 'chi', 'CARHR038390' => 'chi', 'CARHR082330' => 'chi', 'CARHR120520' => 'chi', 'CARHR151470' => 'chi', 'CARHR190950' => 'chi', 'Carub.0001s0760' => 'cru', 'Carub.0001s1146' => 'cru', 'Carub.0003s0721' => 'cru', 'Carub.0004s0858' => 'cru', 'Carub.0005s1040' => 'cru', 'Carub.0006s2035' => 'cru', 'Carub.0015s0005' => 'cru', 'Ca_01607_v3' => 'car', 'Ca_01677_v3' => 'car', 'Ca_06087_v3' => 'car', 'Ca_19238_v3' => 'car', 'Ca_19373_v3' => 'car', 'Ca_21079_v3' => 'car', 'CBR_g54016' => 'cbr', 'CBR_g54018' => 'cbr', 'CBR_g54020' => 'cbr', 'Cc01_g09780' => 'ccan', 'Cc01_g11680' => 'ccan', 'Cc02_g15610' => 'ccan', 'Cc05_g04350' => 'ccan', 'Cc09_g01580' => 'ccan', 'CDE01G0795' => 'cde', 'CDE02G2024' => 'cde', 'CDE02G2260' => 'cde', 'CDE02G4561' => 'cde', 'CDE05G2733' => 'cde', 'CDE05G3422' => 'cde', 'CDE06G2003' => 'cde', 'CDE08G0576' => 'cde', 'CDE09G0048' => 'cde', 'CDE11G0805' => 'cde', 'Cfa003644' => 'cfa', 'Cfa006290' => 'cfa', 'Cfa010080' => 'cfa', 'Cfa011376' => 'cfa', 'Cfa011576' => 'cfa', 'Cfa011577' => 'cfa', 'Cfa014389' => 'cfa', 'Ciclev10006044m.g' => 'ccl', 'Ciclev10006954m.g' => 'ccl', 'Ciclev10015131m.g' => 'ccl', 'Ciclev10015580m.g' => 'ccl', 'Ciclev10028359m.g' => 'ccl', 'Ciclev10028573m.g' => 'ccl', 'CiPaw.03G159300' => 'cil', 'CiPaw.04G115100' => 'cil', 'CiPaw.09G092800' => 'cil', 'CiPaw.10G071800' => 'cil', 'CiPaw.13G105800' => 'cil', 'CiPaw.13G141000' => 'cil', 'CiPaw.14G103400' => 'cil', 'ClCG01G012700' => 'cla', 'ClCG01G012720' => 'cla', 'ClCG01G021920' => 'cla', 'ClCG02G008870' => 'cla', 'ClCG02G020840' => 'cla', 'ClCG02G021930' => 'cla', 'COL.COLO4_19302' => 'col', 'COL.COLO4_25262' => 'col', 'COL.COLO4_31788' => 'col', 'Cpa.g.c34684' => 'cpa', 'Cpa.g.c36520.1' => 'cpa', 'Cpa.g.c45626' => 'cpa', 'Cpa.g.sc121.17' => 'cpa', 'Cpa.g.sc13.22' => 'cpa', 'Cpa.g.sc87.88' => 'cpa', 'Cre06.g261800' => 'cre', 'CsaV3_1G014500' => 'csa', 'CsaV3_1G014510' => 'csa', 'CsaV3_2G034880' => 'csa', 'CsaV3_6G014760' => 'csa', 'CsaV3_6G021500' => 'csa', 'CsaV3_6G048980' => 'csa', 'CSS0002511' => 'camsi', 'CSS0007556' => 'camsi', 'CSS0008532' => 'camsi', 'CSS0009709' => 'camsi', 'CSS0010486' => 'camsi', 'CSS0016768' => 'camsi', 'CSS0023512' => 'camsi', 'CSS0025341' => 'camsi', 'CSS0027999' => 'camsi', 'CSS0028944' => 'camsi', 'CSS0032292' => 'camsi', 'CSS0032464' => 'camsi', 'CSS0037153' => 'camsi', 'CSS0039256' => 'camsi', 'CSS0048392' => 'camsi', 'CSS0050458' => 'camsi', 'DCAR_004224' => 'dca', 'DCAR_006147' => 'dca', 'DCAR_006465' => 'dca', 'DCAR_008159' => 'dca', 'DCAR_012164' => 'dca', 'DCAR_019764' => 'dca', 'Dinv05418' => 'din', 'Dinv10839' => 'din', 'Dinv12521' => 'din', 'Dinv13900' => 'din', 'Dinv29426' => 'din', 'Duzib150G0263' => 'dzi', 'Duzib168G1178' => 'dzi', 'Duzib168G1924' => 'dzi', 'Duzib170G0299' => 'dzi', 'Duzib170G0813' => 'dzi', 'Duzib235G1128' => 'dzi', 'Duzib248G1060' => 'dzi', 'ECA232G1910' => 'eca', 'ECA233G4621' => 'eca', 'ECA238G1216' => 'eca', 'ECA238G1784' => 'eca', 'ECA248G1242' => 'eca', 'EL10Ac8g20071' => 'bvu', 'EL10Ac9g21086' => 'bvu', 'EL10Ac9g22407' => 'bvu', 'EL10Ac9g22412' => 'bvu', 'Eucgr.A01119' => 'egr', 'Eucgr.E04043' => 'egr', 'Eucgr.J00428' => 'egr', 'Eucgr.J00958' => 'egr', 'FAN11G3091' => 'fan', 'FAN11G3651' => 'fan', 'FAN16G2566' => 'fan', 'FAN21G3155' => 'fan', 'FAN21G3400' => 'fan', 'FAN21G3543' => 'fan', 'FAN25G0234' => 'fan', 'FAN25G1422' => 'fan', 'FAN25G3392' => 'fan', 'FvH4_3g01940' => 'fve', 'FvH4_3g29870' => 'fve', 'FvH4_3g33680' => 'fve', 'Glyma.09G004200' => 'gma', 'Glyma.11G151288' => 'gma', 'Glyma.11G189100' => 'gma', 'Glyma.12G072500' => 'gma', 'Glyma.12G085500' => 'gma', 'Glyma.12G181800' => 'gma', 'Glyma.12G193000' => 'gma', 'Glyma.13G309300' => 'gma', 'Glyma.13G319000' => 'gma', 'Glyma.17G012600' => 'gma', 'Gohir.A06G148600' => 'ghi', 'Gohir.A07G115800' => 'ghi', 'Gohir.A08G003600' => 'ghi', 'Gohir.A09G093300' => 'ghi', 'Gohir.A09G105400' => 'ghi', 'Gohir.A09G105500' => 'ghi', 'Gohir.D06G154600' => 'ghi', 'Gohir.D07G120200' => 'ghi', 'Gohir.D08G013900' => 'ghi', 'Gohir.D09G093100' => 'ghi', 'Gohir.D09G102200' => 'ghi', 'Gohir.D09G102300' => 'ghi', 'Gorai.001G129400' => 'gra', 'Gorai.004G008200' => 'gra', 'Gorai.006G109800' => 'gra', 'Gorai.006G119500' => 'gra', 'Gorai.006G121300' => 'gra', 'Gorai.010G180700' => 'gra', 'GSVIVG01012716001' => 'vvi', 'GSVIVG01025118001' => 'vvi', 'GSVIVG01030439001' => 'vvi', 'GSVIVG01031397001' => 'vvi', 'HanXRQChr01g0004201' => 'han', 'HanXRQChr02g0054941' => 'han', 'HanXRQChr05g0141811' => 'han', 'HanXRQChr07g0197751' => 'han', 'HanXRQChr11g0346691' => 'han', 'HanXRQChr13g0396971' => 'han', 'HanXRQChr14g0432951' => 'han', 'HanXRQChr14g0452001' => 'han', 'HanXRQChr15g0496681' => 'han', 'HanXRQChr17g0557491' => 'han', 'HanXRQChr17g0557501' => 'han', 'Haze_06809' => 'cav', 'Haze_12852' => 'cav', 'Haze_15850' => 'cav', 'Haze_23446' => 'cav', 'Haze_23942' => 'cav', 'Haze_23943' => 'cav', 'Hma1.2p1_0091F.1_g046450' => 'hma', 'Hma1.2p1_0128F.1_g059910' => 'hma', 'Hma1.2p1_0249F.1_g102260' => 'hma', 'Hma1.2p1_0453F.1_g156190' => 'hma', 'Hma1.2p1_0695F.1_g204380' => 'hma', 'Hma1.2p1_0749F.1_g212650' => 'hma', 'Hma1.2p1_2156F.1_g315420' => 'hma', 'Hma1.2p1_2686F.1_g326940' => 'hma', 'HPP92_006428' => 'vpl', 'HPP92_012069' => 'vpl', 'HPP92_014129' => 'vpl', 'HPP92_014133' => 'vpl', 'HPP92_017315' => 'vpl', 'HPP92_026445' => 'vpl', 'HPP92_026446' => 'vpl', 'Hund00774' => 'sun', 'Hund07682' => 'sun', 'Hund21413' => 'sun', 'Hund23462' => 'sun', 'Hund23463' => 'sun', 'Lalb_Chr03g0027911' => 'lal', 'Lalb_Chr13g0304271' => 'lal', 'Lalb_Chr19g0137471' => 'lal', 'Lalb_Chr22g0350651' => 'lal', 'Lalb_Chr24g0395151' => 'lal', 'Lj1A1231T40' => 'lonja', 'Lj1A221T48' => 'lonja', 'Lj1C924T12' => 'lonja', 'Lj2C993G6' => 'lonja', 'Lj3g0005790' => 'lja', 'Lj3g0015432' => 'lja', 'Lj3g0017722' => 'lja', 'Lj3g0018497' => 'lja', 'Lj4g0025071' => 'lja', 'Lsat_1_v5_gn_1_129680' => 'lsa', 'Lsat_1_v5_gn_2_25321' => 'lsa', 'Lsat_1_v5_gn_2_95461' => 'lsa', 'Lsat_1_v5_gn_4_159620' => 'lsa', 'Lsat_1_v5_gn_6_41301' => 'lsa', 'Lsat_1_v5_gn_6_74660' => 'lsa', 'Lsat_1_v5_gn_7_11520' => 'lsa', 'Lsat_1_v5_gn_9_67680' => 'lsa', 'Manes.04G008300' => 'mes', 'Manes.04G008400' => 'mes', 'Manes.04G026500' => 'mes', 'Manes.10G135300' => 'mes', 'Manes.11G157300' => 'mes', 'Manes.12G074000' => 'mes', 'Manes.16G006200' => 'mes', 'Manes.17G026400' => 'mes', 'Mapoly0024s0086' => 'mpo', 'Mapoly0024s0087' => 'mpo', 'Mapoly0071s0057' => 'mpo', 'Mapoly0204s0012' => 'mpo', 'MBI04_g37681_MAGBIO' => 'mbi', 'MBI05_g17779_MAGBIO' => 'mbi', 'MBI12_g31184_MAGBIO' => 'mbi', 'MBI17_g11083_MAGBIO' => 'mbi', 'MBI18_g03883_MAGBIO' => 'mbi', 'MBI18_g28940_MAGBIO' => 'mbi', 'MCO01G690' => 'mco', 'MD03G1109900' => 'mdo', 'MD03G1134800' => 'mdo', 'MD05G1348000' => 'mdo', 'MD10G1322400' => 'mdo', 'MD11G1123300' => 'mdo', 'MD11G1157600' => 'mdo', 'Medtr2g084875' => 'mtr', 'Medtr2g088130' => 'mtr', 'Medtr4g055310' => 'mtr', 'Medtr4g061070' => 'mtr', 'Medtr4g132250' => 'mtr', 'MELO3C004795.2' => 'cme', 'MELO3C004797.2' => 'cme', 'MELO3C007396.2' => 'cme', 'MELO3C019277.2' => 'cme', 'MELO3C021449.2' => 'cme', 'MELO3C025736.2' => 'cme', 'Migut.D02175' => 'egut', 'Migut.H01573' => 'egut', 'Migut.M01327' => 'egut', 'Migut.N02513' => 'egut', 'MSTRG.14638' => 'ama', 'MSTRG.18632' => 'ama', 'MSTRG.7203' => 'ama', 'Nitab4.5_0000533g0140' => 'nta', 'Nitab4.5_0000888g0150' => 'nta', 'Nitab4.5_0001453g0040' => 'nta', 'Nitab4.5_0002827g0090' => 'nta', 'Nitab4.5_0003082g0040' => 'nta', 'Nitab4.5_0007799g0040' => 'nta', 'Nitab4.5_0008983g0010' => 'nta', 'Nitab4.5_0009017g0020' => 'nta', 'Nn1g02132' => 'nnu', 'Nn1g03492' => 'nnu', 'Nn1g03493' => 'nnu', 'Nn1g03494' => 'nnu', 'Nn1g07164' => 'nnu', 'Nn1g07291' => 'nnu', 'Nn2g10655' => 'nnu', 'Nn2g11652' => 'nnu', 'Nn2g14008' => 'nnu', 'Nn3g17476' => 'nnu', 'Nn3g17477' => 'nnu', 'Nn4g22370' => 'nnu', 'Nn4g25255' => 'nnu', 'Nn5g27755' => 'nnu', 'Nn6g34260' => 'nnu', 'Nn6g35041' => 'nnu', 'Oeu005924.1' => 'oeu', 'Oeu008383.1' => 'oeu', 'Oeu014928.1' => 'oeu', 'Oeu019889.1' => 'oeu', 'Oeu022271.1' => 'oeu', 'Oeu025271.1' => 'oeu', 'Oeu036302.1' => 'oeu', 'Oeu044100.1' => 'oeu', 'Os01g0528300' => 'osa', 'Os03g0286200' => 'osa', 'Os04g0406600' => 'osa', 'Os07g0512000' => 'osa', 'Os07g0694600' => 'osa', 'Os08g0411000' => 'osa', 'Os09g0565700' => 'osa', 'Os09g0566050' => 'osa', 'Os10g0523700' => 'osa', 'Peaxi162Scf00002g00514' => 'pax', 'Peaxi162Scf00047g01817' => 'pax', 'Peaxi162Scf00114g00001' => 'pax', 'Peaxi162Scf00147g00613' => 'pax', 'Peaxi162Scf00389g00425' => 'pax', 'PGR042G1139' => 'pgr', 'PGR042G3273' => 'pgr', 'PGR102G2180' => 'pgr', 'PGR119G0234' => 'pgr', 'PGR119G0668' => 'pgr', 'PGSC0003DMG400007122' => 'stu', 'PGSC0003DMG400016478' => 'stu', 'PGSC0003DMG400025374' => 'stu', 'PGSC0003DMG400026536' => 'stu', 'Phvul.003G079600' => 'pvu', 'Phvul.005G115600' => 'pvu', 'Phvul.005G127100' => 'pvu', 'Phvul.006G149500' => 'pvu', 'Phvul.006G149600' => 'pvu', 'Phvul.011G071800' => 'pvu', 'Phvul.011G090400' => 'pvu', 'Potri.004G013400' => 'ptr', 'Potri.004G188100' => 'ptr', 'Potri.008G195500' => 'ptr', 'Potri.009G148800' => 'ptr', 'Potri.011G004700' => 'ptr', 'Pp3c17_22810' => 'ppa', 'Pp3c18_4480' => 'ppa', 'Pp3c19_13030' => 'ppa', 'Pp3c1_33620' => 'ppa', 'Pp3c2_9380' => 'ppa', 'PRCOL_00001023' => 'pco', 'Prupe.3G216300' => 'ppe', 'Prupe.4G019500' => 'ppe', 'Prupe.6G092500' => 'ppe', 'Prupe.6G119200' => 'ppe', 'Psat0s1945g0080' => 'psa', 'Psat0s4167g0040' => 'psa', 'Psat1g185800' => 'psa', 'Psat4g006440' => 'psa', 'Psat4g006480' => 'psa', 'Psat4g168120' => 'psa', 'Psat5g255680' => 'psa', 'Psat5g261760' => 'psa', 'Psat7g222120' => 'psa', 'PSO063G7252' => 'pso', 'PSO170G4778' => 'pso', 'PSO210G2249' => 'pso', 'PSO339G2411' => 'pso', 'PSO339G2457' => 'pso', 'PSO339G2854' => 'pso', 'PSO339G4288' => 'pso', 'PSO339G4615' => 'pso', 'PSO384G2796' => 'pso', 'PSO384G2940' => 'pso', 'PSO384G4227' => 'pso', 'PSO478G1425' => 'pso', 'PSO541G3863' => 'pso', 'PSO675G0507' => 'pso', 'PSO782G0338' => 'pso', 'PSO832G0644' => 'pso', 'QL01p013664' => 'qlo', 'QL01p036598' => 'qlo', 'QL05p072984' => 'qlo', 'QL08p005768' => 'qlo', 'QL08p032743' => 'qlo', 'QL93p0073_0439' => 'qlo', 'QL93p0073_0444' => 'qlo', 'RcHm_v2.0_Chr5g0002851' => 'rch', 'RcHm_v2.0_Chr5g0055201' => 'rch', 'RcHm_v2.0_Chr5g0061191' => 'rch', 'RcHm_v2.0_Chr7g0203231' => 'rch', 'Rhsim01G0208100' => 'rsi', 'Rhsim01G0208200' => 'rsi', 'Rhsim02G0106500' => 'rsi', 'Rhsim03G0107900' => 'rsi', 'Rhsim06G0163400' => 'rsi', 'Rhsim13G0105200' => 'rsi', 'Sabra04G0006300' => 'sbr', 'Sabra04G0127000' => 'sbr', 'Sabra08G0148700' => 'sbr', 'Sabra09G0117400' => 'sbr', 'SalBow1G3326' => 'sbo', 'SalBow3G3228' => 'sbo', 'SalBow6G1634' => 'sbo', 'SalBow6G3603' => 'sbo', 'SalBow6G5266' => 'sbo', 'SalBow7G2265' => 'sbo', 'SalBow8G0850' => 'sbo', 'SalBow8G2592' => 'sbo', 'Sc05g0009240' => 'sci', 'Sc12g0002300' => 'sci', 'Sc21g0000100' => 'sci', 'Sc21g0004720' => 'sci', 'Sed0002949' => 'sed', 'Sed0004114' => 'sed', 'Sed0004306' => 'sed', 'Sed0006172' => 'sed', 'Sed0008413' => 'sed', 'Sed0013809' => 'sed', 'Sed0019556' => 'sed', 'SEGI_03570' => 'sgi', 'SEGI_07859' => 'sgi', 'SEGI_15042' => 'sgi', 'SEGI_16263' => 'sgi', 'SEGI_16552' => 'sgi', 'SEGI_24331' => 'sgi', 'SEGI_27316' => 'sgi', 'SEGI_29521' => 'sgi', 'SEGI_41342' => 'sgi', 'SGA_v2.0_scaffold27G11617' => 'sas', 'SGA_v2.0_scaffold316G48428' => 'sas', 'SGA_v2.0_scaffold49G18261' => 'sas', 'SGA_v2.0_scaffold7G03831' => 'sas', 'SGA_v2.0_scaffold93G28359' => 'sas', 'SHI02210' => 'shi', 'SHI06028' => 'shi', 'SHI06321' => 'shi', 'SMO111G0012' => 'smo', 'SMO228G0080' => 'smo', 'SMO356G0756' => 'smo', 'Solyc02g080620.3' => 'sly', 'Solyc06g074530.1' => 'sly', 'Solyc11g066890.1' => 'sly', 'Solyc11g072520.3' => 'sly', 'Sopen02g025330' => 'spe', 'Sopen06g031000' => 'spe', 'Sopen09g008240' => 'spe', 'Sopen09g025210' => 'spe', 'Sopen11g026600' => 'spe', 'Sopen11g030170' => 'spe', 'Sp1g10420' => 'spa', 'Sp3g06570' => 'spa', 'Sp4g10660' => 'spa', 'Sp5g16460' => 'spa', 'Sp6g22710' => 'spa', 'TAR365G0112' => 'tar', 'TAR369G0717' => 'tar', 'TAR374G0976' => 'tar', 'TAR623G1128' => 'tar', 'TAR626G1937' => 'tar', 'TAR627G0123' => 'tar', 'TAR628G0305' => 'tar', 'TAR636G1176' => 'tar', 'TAR636G2442' => 'tar', 'THA.LOC104800556' => 'tha', 'THA.LOC104809501' => 'tha', 'THA.LOC104815126' => 'tha', 'THA.LOC104815732' => 'tha', 'THA.LOC104823528' => 'tha', 'Thecc.02G365600' => 'tca', 'Thecc.06G222300' => 'tca', 'Thecc.09G261800' => 'tca', 'Thecc.09G291400' => 'tca', 'Thhalv10003028m.g' => 'esa', 'Thhalv10007886m.g' => 'esa', 'Thhalv10016085m.g' => 'esa', 'Thhalv10016681m.g' => 'esa', 'Thhalv10020951m.g' => 'esa', 'TPR.G15598' => 'tpr', 'TPR.G29305' => 'tpr', 'TPR.G32395' => 'tpr', 'TPR.G36998' => 'tpr', 'TPR.G4227' => 'tpr', 'TWI18G1433' => 'twi', 'TWI31G0755' => 'twi', 'TWI38G0912' => 'twi', 'TWI75G1097' => 'twi', 'TWI75G1619' => 'twi', 'TWI79G1336' => 'twi', 'unitig_0.g943' => 'ugi', 'unitig_0.g944' => 'ugi', 'unitig_22.g6646' => 'ugi', 'unitig_37.g12681' => 'ugi', 'unitig_8.g3290' => 'ugi', 'vmacro03278' => 'vma', 'vmacro12197' => 'vma', 'vmacro14478' => 'vma', 'vmacro15787' => 'vma', 'vmacro15789' => 'vma', 'vmacro15790' => 'vma', 'vmacro15806' => 'vma', 'vmacro22907' => 'vma', 'vmacro22908' => 'vma', 'vmacro22909' => 'vma', 'vmacro23108' => 'vma', 'VMungo0540G0540' => 'vmu', 'VMungo0540G2468' => 'vmu', 'VMungo1080G0390' => 'vmu', 'VMungo1080G1165' => 'vmu', 'VMungo1127G0170' => 'vmu', 'VMungo1127G2099' => 'vmu', 'VMungo1215G3013' => 'vmu', 'Zm00001eb013110' => 'zma', 'Zm00001eb084260' => 'zma', 'Zm00001eb096110' => 'zma', 'Zm00001eb217510' => 'zma', 'Zm00001eb322550' => 'zma', 'Zm00001eb390770' => 'zma', 'Zm00001eb397170' => 'zma', 'Zm00001eb404610' => 'zma', 'Zm00001eb421790' => 'zma' ) $gf_id = 'HOM05D000911' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000911' ) $data_identifier = 'HOM05D000911' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 16, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 5, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 6, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 8, 'nnu' => (int) 16, 'oeu' => (int) 8, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 5, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 16, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421790' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000911', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27780' => 'bna', 'A03p35380' => 'bna', 'A04p21160' => 'bna', 'A05p40570' => 'bna', 'A06p26900' => 'bna', 'A08p33230' => 'bna', 'A09p65960' => 'bna', 'A10p18290' => 'bna', 'Aa31LG1G12990' => 'aar', 'Aa31LG1G2980' => 'aar', 'Aa31LG4G14320' => 'aar', 'Aa31LG7G11800' => 'aar', 'Aa31sc36G50' => 'aar', 'Aa31sc36G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3721' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5459' => 'aag', 'Actinidia03028' => 'ach', 'Actinidia03753' => 'ach', 'Actinidia04187' => 'ach', 'Actinidia05509' => 'ach', 'Actinidia24180' => 'ach', 'Actinidia26906' => 'ach', 'Actinidia37097' => 'ach', 'Actinidia38249' => 'ach', 'Ah.01g003470' => 'amhyb', 'Ah.01g004580' => 'amhyb', 'Ah.01g014850' => 'amhyb', 'Ah.01g016830' => 'amhyb', 'Ah.14g088000' => 'amhyb', 'AL1G22980' => 'aly', 'AL3G18990' => 'aly', 'AL4G22440' => 'aly', 'AL4G33180' => 'aly', 'AL5G22920' => 'aly', 'AL6G33660' => 'aly', 'AL8G20720' => 'aly', 'Aqoxy1G00935' => 'aox', 'Aqoxy1G02094' => 'aox', 'Aqoxy2G01239' => 'aox', 'Aqoxy4G01870' => 'aox', 'Aqoxy7G00450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.36ZVTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71EM27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5D6C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH3WRE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3NCM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RIM768' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YB5YRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z36GDV' => 'arhy', 'AT1G08250' => 'ath', 'AT1G11790' => 'ath', 'AT2G27820' => 'ath', 'AT3G07630' => 'ath', 'AT3G44720' => 'ath', 'AT5G22630' => 'ath', 'ATR0693G304' => 'atr', 'ATR0794G109' => 'atr', 'ATR0820G120' => 'atr', 'ATR1159G064' => 'atr', 'Atru.chr10.2239' => 'acertr', 'Atru.chr3.3371' => 'acertr', 'Atru.chr6.3202' => 'acertr', 'AUR62006499' => 'cqu', 'AUR62012718' => 'cqu', 'AUR62021938' => 'cqu', 'AUR62023932' => 'cqu', 'AUR62025034' => 'cqu', 'AUR62025035' => 'cqu', 'AUR62038307' => 'cqu', 'AUR62043466' => 'cqu', 'BcaB02g10748' => 'bca', 'BcaB03g13231' => 'bca', 'BcaB03g14689' => 'bca', 'BcaB05g22716' => 'bca', 'BcaB06g28172' => 'bca', 'BcaB08g36413' => 'bca', 'BcaC01g02186' => 'bca', 'BcaC01g04272' => 'bca', 'BcaC02g08080' => 'bca', 'BcaC02g08227' => 'bca', 'BcaC03g13901' => 'bca', 'BcaC04g19593' => 'bca', 'BcaC04g20874' => 'bca', 'BcaC05g29557' => 'bca', 'BcaC06g35505' => 'bca', 'BcaC07g41954' => 'bca', 'BcaC07g41955' => 'bca', 'BcaC07g41956' => 'bca', 'BcaC07g42519' => 'bca', 'BcaC07g42520' => 'bca', 'BcaC07g42523' => 'bca', 'BcaC07g42524' => 'bca', 'BcaC07g42525' => 'bca', 'BcaC08g47480' => 'bca', 'BcaC08g47481' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00530' => 'bna', 'BolC2t07178H' => 'bol', 'BolC3t16567H' => 'bol', 'BolC4t27234H' => 'bol', 'BolC5t29728H' => 'bol', 'BolC5t34622H' => 'bol', 'BolC6t40321H' => 'bol', 'BolC7t42028H' => 'bol', 'BolC8t49125H' => 'bol', 'BolC8t52538H' => 'bol', 'BolC8t52539H' => 'bol', 'BolC9t56681H' => 'bol', 'BolC9t58266H' => 'bol', 'BolSC21t60294H' => 'bol', 'BraA02t05670Z' => 'bra', 'BraA03t12716Z' => 'bra', 'BraA04t17685Z' => 'bra', 'BraA05t22788Z' => 'bra', 'BraA06t24032Z' => 'bra', 'BraA06t25625Z' => 'bra', 'BraA07t27930Z' => 'bra', 'BraA08t35242Z' => 'bra', 'BraA09t38609Z' => 'bra', 'BraA10t43905Z' => 'bra', 'C02p11060' => 'bna', 'C03p42990' => 'bna', 'C03p67310' => 'bna', 'C04p56990' => 'bna', 'C04p58660' => 'bna', 'C05p09890' => 'bna', 'C05p59680' => 'bna', 'C06p19830' => 'bna', 'C06p53040' => 'bna', 'C07p15230' => 'bna', 'C08p50070' => 'bna', 'C08p50090' => 'bna', 'C09p38330' => 'bna', 'C09p53940' => 'bna', 'CAN.G1014.1' => 'can', 'CAN.G644.30' => 'can', 'CAN.G84.47' => 'can', 'CAN.G919.8' => 'can', 'CANSAT54G0113' => 'cansat', 'CANSAT54G1286' => 'cansat', 'CANSAT64G1020' => 'cansat', 'CARHR008080' => 'chi', 'CARHR008090' => 'chi', 'CARHR012130' => 'chi', 'CARHR038390' => 'chi', 'CARHR082330' => 'chi', 'CARHR120520' => 'chi', 'CARHR151470' => 'chi', 'CARHR190950' => 'chi', 'Carub.0001s0760' => 'cru', 'Carub.0001s1146' => 'cru', 'Carub.0003s0721' => 'cru', 'Carub.0004s0858' => 'cru', 'Carub.0005s1040' => 'cru', 'Carub.0006s2035' => 'cru', 'Carub.0015s0005' => 'cru', 'Ca_01607_v3' => 'car', 'Ca_01677_v3' => 'car', 'Ca_06087_v3' => 'car', 'Ca_19238_v3' => 'car', 'Ca_19373_v3' => 'car', 'Ca_21079_v3' => 'car', 'CBR_g54016' => 'cbr', 'CBR_g54018' => 'cbr', 'CBR_g54020' => 'cbr', 'Cc01_g09780' => 'ccan', 'Cc01_g11680' => 'ccan', 'Cc02_g15610' => 'ccan', 'Cc05_g04350' => 'ccan', 'Cc09_g01580' => 'ccan', 'CDE01G0795' => 'cde', 'CDE02G2024' => 'cde', 'CDE02G2260' => 'cde', 'CDE02G4561' => 'cde', 'CDE05G2733' => 'cde', 'CDE05G3422' => 'cde', 'CDE06G2003' => 'cde', 'CDE08G0576' => 'cde', 'CDE09G0048' => 'cde', 'CDE11G0805' => 'cde', 'Cfa003644' => 'cfa', 'Cfa006290' => 'cfa', 'Cfa010080' => 'cfa', 'Cfa011376' => 'cfa', 'Cfa011576' => 'cfa', 'Cfa011577' => 'cfa', 'Cfa014389' => 'cfa', 'Ciclev10006044m.g' => 'ccl', 'Ciclev10006954m.g' => 'ccl', 'Ciclev10015131m.g' => 'ccl', 'Ciclev10015580m.g' => 'ccl', 'Ciclev10028359m.g' => 'ccl', 'Ciclev10028573m.g' => 'ccl', 'CiPaw.03G159300' => 'cil', 'CiPaw.04G115100' => 'cil', 'CiPaw.09G092800' => 'cil', 'CiPaw.10G071800' => 'cil', 'CiPaw.13G105800' => 'cil', 'CiPaw.13G141000' => 'cil', 'CiPaw.14G103400' => 'cil', 'ClCG01G012700' => 'cla', 'ClCG01G012720' => 'cla', 'ClCG01G021920' => 'cla', 'ClCG02G008870' => 'cla', 'ClCG02G020840' => 'cla', 'ClCG02G021930' => 'cla', 'COL.COLO4_19302' => 'col', 'COL.COLO4_25262' => 'col', 'COL.COLO4_31788' => 'col', 'Cpa.g.c34684' => 'cpa', 'Cpa.g.c36520.1' => 'cpa', 'Cpa.g.c45626' => 'cpa', 'Cpa.g.sc121.17' => 'cpa', 'Cpa.g.sc13.22' => 'cpa', 'Cpa.g.sc87.88' => 'cpa', 'Cre06.g261800' => 'cre', 'CsaV3_1G014500' => 'csa', 'CsaV3_1G014510' => 'csa', 'CsaV3_2G034880' => 'csa', 'CsaV3_6G014760' => 'csa', 'CsaV3_6G021500' => 'csa', 'CsaV3_6G048980' => 'csa', 'CSS0002511' => 'camsi', 'CSS0007556' => 'camsi', 'CSS0008532' => 'camsi', 'CSS0009709' => 'camsi', 'CSS0010486' => 'camsi', 'CSS0016768' => 'camsi', 'CSS0023512' => 'camsi', 'CSS0025341' => 'camsi', 'CSS0027999' => 'camsi', 'CSS0028944' => 'camsi', 'CSS0032292' => 'camsi', 'CSS0032464' => 'camsi', 'CSS0037153' => 'camsi', 'CSS0039256' => 'camsi', 'CSS0048392' => 'camsi', 'CSS0050458' => 'camsi', 'DCAR_004224' => 'dca', 'DCAR_006147' => 'dca', 'DCAR_006465' => 'dca', 'DCAR_008159' => 'dca', 'DCAR_012164' => 'dca', 'DCAR_019764' => 'dca', 'Dinv05418' => 'din', 'Dinv10839' => 'din', 'Dinv12521' => 'din', 'Dinv13900' => 'din', 'Dinv29426' => 'din', 'Duzib150G0263' => 'dzi', 'Duzib168G1178' => 'dzi', 'Duzib168G1924' => 'dzi', 'Duzib170G0299' => 'dzi', 'Duzib170G0813' => 'dzi', 'Duzib235G1128' => 'dzi', 'Duzib248G1060' => 'dzi', 'ECA232G1910' => 'eca', 'ECA233G4621' => 'eca', 'ECA238G1216' => 'eca', 'ECA238G1784' => 'eca', 'ECA248G1242' => 'eca', 'EL10Ac8g20071' => 'bvu', 'EL10Ac9g21086' => 'bvu', 'EL10Ac9g22407' => 'bvu', 'EL10Ac9g22412' => 'bvu', 'Eucgr.A01119' => 'egr', 'Eucgr.E04043' => 'egr', 'Eucgr.J00428' => 'egr', 'Eucgr.J00958' => 'egr', 'FAN11G3091' => 'fan', 'FAN11G3651' => 'fan', 'FAN16G2566' => 'fan', 'FAN21G3155' => 'fan', 'FAN21G3400' => 'fan', 'FAN21G3543' => 'fan', 'FAN25G0234' => 'fan', 'FAN25G1422' => 'fan', 'FAN25G3392' => 'fan', 'FvH4_3g01940' => 'fve', 'FvH4_3g29870' => 'fve', 'FvH4_3g33680' => 'fve', 'Glyma.09G004200' => 'gma', 'Glyma.11G151288' => 'gma', 'Glyma.11G189100' => 'gma', 'Glyma.12G072500' => 'gma', 'Glyma.12G085500' => 'gma', 'Glyma.12G181800' => 'gma', 'Glyma.12G193000' => 'gma', 'Glyma.13G309300' => 'gma', 'Glyma.13G319000' => 'gma', 'Glyma.17G012600' => 'gma', 'Gohir.A06G148600' => 'ghi', 'Gohir.A07G115800' => 'ghi', 'Gohir.A08G003600' => 'ghi', 'Gohir.A09G093300' => 'ghi', 'Gohir.A09G105400' => 'ghi', 'Gohir.A09G105500' => 'ghi', 'Gohir.D06G154600' => 'ghi', 'Gohir.D07G120200' => 'ghi', 'Gohir.D08G013900' => 'ghi', 'Gohir.D09G093100' => 'ghi', 'Gohir.D09G102200' => 'ghi', 'Gohir.D09G102300' => 'ghi', 'Gorai.001G129400' => 'gra', 'Gorai.004G008200' => 'gra', 'Gorai.006G109800' => 'gra', 'Gorai.006G119500' => 'gra', 'Gorai.006G121300' => 'gra', 'Gorai.010G180700' => 'gra', 'GSVIVG01012716001' => 'vvi', 'GSVIVG01025118001' => 'vvi', 'GSVIVG01030439001' => 'vvi', 'GSVIVG01031397001' => 'vvi', 'HanXRQChr01g0004201' => 'han', 'HanXRQChr02g0054941' => 'han', 'HanXRQChr05g0141811' => 'han', 'HanXRQChr07g0197751' => 'han', 'HanXRQChr11g0346691' => 'han', 'HanXRQChr13g0396971' => 'han', 'HanXRQChr14g0432951' => 'han', 'HanXRQChr14g0452001' => 'han', 'HanXRQChr15g0496681' => 'han', 'HanXRQChr17g0557491' => 'han', 'HanXRQChr17g0557501' => 'han', 'Haze_06809' => 'cav', 'Haze_12852' => 'cav', 'Haze_15850' => 'cav', 'Haze_23446' => 'cav', 'Haze_23942' => 'cav', 'Haze_23943' => 'cav', 'Hma1.2p1_0091F.1_g046450' => 'hma', 'Hma1.2p1_0128F.1_g059910' => 'hma', 'Hma1.2p1_0249F.1_g102260' => 'hma', 'Hma1.2p1_0453F.1_g156190' => 'hma', 'Hma1.2p1_0695F.1_g204380' => 'hma', 'Hma1.2p1_0749F.1_g212650' => 'hma', 'Hma1.2p1_2156F.1_g315420' => 'hma', 'Hma1.2p1_2686F.1_g326940' => 'hma', 'HPP92_006428' => 'vpl', 'HPP92_012069' => 'vpl', 'HPP92_014129' => 'vpl', 'HPP92_014133' => 'vpl', 'HPP92_017315' => 'vpl', 'HPP92_026445' => 'vpl', 'HPP92_026446' => 'vpl', 'Hund00774' => 'sun', 'Hund07682' => 'sun', 'Hund21413' => 'sun', 'Hund23462' => 'sun', 'Hund23463' => 'sun', 'Lalb_Chr03g0027911' => 'lal', 'Lalb_Chr13g0304271' => 'lal', 'Lalb_Chr19g0137471' => 'lal', 'Lalb_Chr22g0350651' => 'lal', 'Lalb_Chr24g0395151' => 'lal', 'Lj1A1231T40' => 'lonja', 'Lj1A221T48' => 'lonja', 'Lj1C924T12' => 'lonja', 'Lj2C993G6' => 'lonja', 'Lj3g0005790' => 'lja', 'Lj3g0015432' => 'lja', 'Lj3g0017722' => 'lja', 'Lj3g0018497' => 'lja', 'Lj4g0025071' => 'lja', 'Lsat_1_v5_gn_1_129680' => 'lsa', 'Lsat_1_v5_gn_2_25321' => 'lsa', 'Lsat_1_v5_gn_2_95461' => 'lsa', 'Lsat_1_v5_gn_4_159620' => 'lsa', 'Lsat_1_v5_gn_6_41301' => 'lsa', 'Lsat_1_v5_gn_6_74660' => 'lsa', 'Lsat_1_v5_gn_7_11520' => 'lsa', 'Lsat_1_v5_gn_9_67680' => 'lsa', 'Manes.04G008300' => 'mes', 'Manes.04G008400' => 'mes', 'Manes.04G026500' => 'mes', 'Manes.10G135300' => 'mes', 'Manes.11G157300' => 'mes', 'Manes.12G074000' => 'mes', 'Manes.16G006200' => 'mes', 'Manes.17G026400' => 'mes', 'Mapoly0024s0086' => 'mpo', 'Mapoly0024s0087' => 'mpo', 'Mapoly0071s0057' => 'mpo', 'Mapoly0204s0012' => 'mpo', 'MBI04_g37681_MAGBIO' => 'mbi', 'MBI05_g17779_MAGBIO' => 'mbi', 'MBI12_g31184_MAGBIO' => 'mbi', 'MBI17_g11083_MAGBIO' => 'mbi', 'MBI18_g03883_MAGBIO' => 'mbi', 'MBI18_g28940_MAGBIO' => 'mbi', 'MCO01G690' => 'mco', 'MD03G1109900' => 'mdo', 'MD03G1134800' => 'mdo', 'MD05G1348000' => 'mdo', 'MD10G1322400' => 'mdo', 'MD11G1123300' => 'mdo', 'MD11G1157600' => 'mdo', 'Medtr2g084875' => 'mtr', 'Medtr2g088130' => 'mtr', 'Medtr4g055310' => 'mtr', 'Medtr4g061070' => 'mtr', 'Medtr4g132250' => 'mtr', 'MELO3C004795.2' => 'cme', 'MELO3C004797.2' => 'cme', 'MELO3C007396.2' => 'cme', 'MELO3C019277.2' => 'cme', 'MELO3C021449.2' => 'cme', 'MELO3C025736.2' => 'cme', 'Migut.D02175' => 'egut', 'Migut.H01573' => 'egut', 'Migut.M01327' => 'egut', 'Migut.N02513' => 'egut', 'MSTRG.14638' => 'ama', 'MSTRG.18632' => 'ama', 'MSTRG.7203' => 'ama', 'Nitab4.5_0000533g0140' => 'nta', 'Nitab4.5_0000888g0150' => 'nta', 'Nitab4.5_0001453g0040' => 'nta', 'Nitab4.5_0002827g0090' => 'nta', 'Nitab4.5_0003082g0040' => 'nta', 'Nitab4.5_0007799g0040' => 'nta', 'Nitab4.5_0008983g0010' => 'nta', 'Nitab4.5_0009017g0020' => 'nta', 'Nn1g02132' => 'nnu', 'Nn1g03492' => 'nnu', 'Nn1g03493' => 'nnu', 'Nn1g03494' => 'nnu', 'Nn1g07164' => 'nnu', 'Nn1g07291' => 'nnu', 'Nn2g10655' => 'nnu', 'Nn2g11652' => 'nnu', 'Nn2g14008' => 'nnu', 'Nn3g17476' => 'nnu', 'Nn3g17477' => 'nnu', 'Nn4g22370' => 'nnu', 'Nn4g25255' => 'nnu', 'Nn5g27755' => 'nnu', 'Nn6g34260' => 'nnu', 'Nn6g35041' => 'nnu', 'Oeu005924.1' => 'oeu', 'Oeu008383.1' => 'oeu', 'Oeu014928.1' => 'oeu', 'Oeu019889.1' => 'oeu', 'Oeu022271.1' => 'oeu', 'Oeu025271.1' => 'oeu', 'Oeu036302.1' => 'oeu', 'Oeu044100.1' => 'oeu', 'Os01g0528300' => 'osa', 'Os03g0286200' => 'osa', 'Os04g0406600' => 'osa', 'Os07g0512000' => 'osa', 'Os07g0694600' => 'osa', 'Os08g0411000' => 'osa', 'Os09g0565700' => 'osa', 'Os09g0566050' => 'osa', 'Os10g0523700' => 'osa', 'Peaxi162Scf00002g00514' => 'pax', 'Peaxi162Scf00047g01817' => 'pax', 'Peaxi162Scf00114g00001' => 'pax', 'Peaxi162Scf00147g00613' => 'pax', 'Peaxi162Scf00389g00425' => 'pax', 'PGR042G1139' => 'pgr', 'PGR042G3273' => 'pgr', 'PGR102G2180' => 'pgr', 'PGR119G0234' => 'pgr', 'PGR119G0668' => 'pgr', 'PGSC0003DMG400007122' => 'stu', 'PGSC0003DMG400016478' => 'stu', 'PGSC0003DMG400025374' => 'stu', 'PGSC0003DMG400026536' => 'stu', 'Phvul.003G079600' => 'pvu', 'Phvul.005G115600' => 'pvu', 'Phvul.005G127100' => 'pvu', 'Phvul.006G149500' => 'pvu', 'Phvul.006G149600' => 'pvu', 'Phvul.011G071800' => 'pvu', 'Phvul.011G090400' => 'pvu', 'Potri.004G013400' => 'ptr', 'Potri.004G188100' => 'ptr', 'Potri.008G195500' => 'ptr', 'Potri.009G148800' => 'ptr', 'Potri.011G004700' => 'ptr', 'Pp3c17_22810' => 'ppa', 'Pp3c18_4480' => 'ppa', 'Pp3c19_13030' => 'ppa', 'Pp3c1_33620' => 'ppa', 'Pp3c2_9380' => 'ppa', 'PRCOL_00001023' => 'pco', 'Prupe.3G216300' => 'ppe', 'Prupe.4G019500' => 'ppe', 'Prupe.6G092500' => 'ppe', 'Prupe.6G119200' => 'ppe', 'Psat0s1945g0080' => 'psa', 'Psat0s4167g0040' => 'psa', 'Psat1g185800' => 'psa', 'Psat4g006440' => 'psa', 'Psat4g006480' => 'psa', 'Psat4g168120' => 'psa', 'Psat5g255680' => 'psa', 'Psat5g261760' => 'psa', 'Psat7g222120' => 'psa', 'PSO063G7252' => 'pso', 'PSO170G4778' => 'pso', 'PSO210G2249' => 'pso', 'PSO339G2411' => 'pso', 'PSO339G2457' => 'pso', 'PSO339G2854' => 'pso', 'PSO339G4288' => 'pso', 'PSO339G4615' => 'pso', 'PSO384G2796' => 'pso', 'PSO384G2940' => 'pso', 'PSO384G4227' => 'pso', 'PSO478G1425' => 'pso', 'PSO541G3863' => 'pso', 'PSO675G0507' => 'pso', 'PSO782G0338' => 'pso', 'PSO832G0644' => 'pso', 'QL01p013664' => 'qlo', 'QL01p036598' => 'qlo', 'QL05p072984' => 'qlo', 'QL08p005768' => 'qlo', 'QL08p032743' => 'qlo', 'QL93p0073_0439' => 'qlo', 'QL93p0073_0444' => 'qlo', 'RcHm_v2.0_Chr5g0002851' => 'rch', 'RcHm_v2.0_Chr5g0055201' => 'rch', 'RcHm_v2.0_Chr5g0061191' => 'rch', 'RcHm_v2.0_Chr7g0203231' => 'rch', 'Rhsim01G0208100' => 'rsi', 'Rhsim01G0208200' => 'rsi', 'Rhsim02G0106500' => 'rsi', 'Rhsim03G0107900' => 'rsi', 'Rhsim06G0163400' => 'rsi', 'Rhsim13G0105200' => 'rsi', 'Sabra04G0006300' => 'sbr', 'Sabra04G0127000' => 'sbr', 'Sabra08G0148700' => 'sbr', 'Sabra09G0117400' => 'sbr', 'SalBow1G3326' => 'sbo', 'SalBow3G3228' => 'sbo', 'SalBow6G1634' => 'sbo', 'SalBow6G3603' => 'sbo', 'SalBow6G5266' => 'sbo', 'SalBow7G2265' => 'sbo', 'SalBow8G0850' => 'sbo', 'SalBow8G2592' => 'sbo', 'Sc05g0009240' => 'sci', 'Sc12g0002300' => 'sci', 'Sc21g0000100' => 'sci', 'Sc21g0004720' => 'sci', 'Sed0002949' => 'sed', 'Sed0004114' => 'sed', 'Sed0004306' => 'sed', 'Sed0006172' => 'sed', 'Sed0008413' => 'sed', 'Sed0013809' => 'sed', 'Sed0019556' => 'sed', 'SEGI_03570' => 'sgi', 'SEGI_07859' => 'sgi', 'SEGI_15042' => 'sgi', 'SEGI_16263' => 'sgi', 'SEGI_16552' => 'sgi', 'SEGI_24331' => 'sgi', 'SEGI_27316' => 'sgi', 'SEGI_29521' => 'sgi', 'SEGI_41342' => 'sgi', 'SGA_v2.0_scaffold27G11617' => 'sas', 'SGA_v2.0_scaffold316G48428' => 'sas', 'SGA_v2.0_scaffold49G18261' => 'sas', 'SGA_v2.0_scaffold7G03831' => 'sas', 'SGA_v2.0_scaffold93G28359' => 'sas', 'SHI02210' => 'shi', 'SHI06028' => 'shi', 'SHI06321' => 'shi', 'SMO111G0012' => 'smo', 'SMO228G0080' => 'smo', 'SMO356G0756' => 'smo', 'Solyc02g080620.3' => 'sly', 'Solyc06g074530.1' => 'sly', 'Solyc11g066890.1' => 'sly', 'Solyc11g072520.3' => 'sly', 'Sopen02g025330' => 'spe', 'Sopen06g031000' => 'spe', 'Sopen09g008240' => 'spe', 'Sopen09g025210' => 'spe', 'Sopen11g026600' => 'spe', 'Sopen11g030170' => 'spe', 'Sp1g10420' => 'spa', 'Sp3g06570' => 'spa', 'Sp4g10660' => 'spa', 'Sp5g16460' => 'spa', 'Sp6g22710' => 'spa', 'TAR365G0112' => 'tar', 'TAR369G0717' => 'tar', 'TAR374G0976' => 'tar', 'TAR623G1128' => 'tar', 'TAR626G1937' => 'tar', 'TAR627G0123' => 'tar', 'TAR628G0305' => 'tar', 'TAR636G1176' => 'tar', 'TAR636G2442' => 'tar', 'THA.LOC104800556' => 'tha', 'THA.LOC104809501' => 'tha', 'THA.LOC104815126' => 'tha', 'THA.LOC104815732' => 'tha', 'THA.LOC104823528' => 'tha', 'Thecc.02G365600' => 'tca', 'Thecc.06G222300' => 'tca', 'Thecc.09G261800' => 'tca', 'Thecc.09G291400' => 'tca', 'Thhalv10003028m.g' => 'esa', 'Thhalv10007886m.g' => 'esa', 'Thhalv10016085m.g' => 'esa', 'Thhalv10016681m.g' => 'esa', 'Thhalv10020951m.g' => 'esa', 'TPR.G15598' => 'tpr', 'TPR.G29305' => 'tpr', 'TPR.G32395' => 'tpr', 'TPR.G36998' => 'tpr', 'TPR.G4227' => 'tpr', 'TWI18G1433' => 'twi', 'TWI31G0755' => 'twi', 'TWI38G0912' => 'twi', 'TWI75G1097' => 'twi', 'TWI75G1619' => 'twi', 'TWI79G1336' => 'twi', 'unitig_0.g943' => 'ugi', 'unitig_0.g944' => 'ugi', 'unitig_22.g6646' => 'ugi', 'unitig_37.g12681' => 'ugi', 'unitig_8.g3290' => 'ugi', 'vmacro03278' => 'vma', 'vmacro12197' => 'vma', 'vmacro14478' => 'vma', 'vmacro15787' => 'vma', 'vmacro15789' => 'vma', 'vmacro15790' => 'vma', 'vmacro15806' => 'vma', 'vmacro22907' => 'vma', 'vmacro22908' => 'vma', 'vmacro22909' => 'vma', 'vmacro23108' => 'vma', 'VMungo0540G0540' => 'vmu', 'VMungo0540G2468' => 'vmu', 'VMungo1080G0390' => 'vmu', 'VMungo1080G1165' => 'vmu', 'VMungo1127G0170' => 'vmu', 'VMungo1127G2099' => 'vmu', 'VMungo1215G3013' => 'vmu', 'Zm00001eb013110' => 'zma', 'Zm00001eb084260' => 'zma', 'Zm00001eb096110' => 'zma', 'Zm00001eb217510' => 'zma', 'Zm00001eb322550' => 'zma', 'Zm00001eb390770' => 'zma', 'Zm00001eb397170' => 'zma', 'Zm00001eb404610' => 'zma', 'Zm00001eb421790' => 'zma' ), 'gf_id' => 'HOM05D000911', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000911' ), 'data_identifier' => 'HOM05D000911', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000911', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27780' => 'bna', 'A03p35380' => 'bna', 'A04p21160' => 'bna', 'A05p40570' => 'bna', 'A06p26900' => 'bna', 'A08p33230' => 'bna', 'A09p65960' => 'bna', 'A10p18290' => 'bna', 'Aa31LG1G12990' => 'aar', 'Aa31LG1G2980' => 'aar', 'Aa31LG4G14320' => 'aar', 'Aa31LG7G11800' => 'aar', 'Aa31sc36G50' => 'aar', 'Aa31sc36G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3721' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5459' => 'aag', 'Actinidia03028' => 'ach', 'Actinidia03753' => 'ach', 'Actinidia04187' => 'ach', 'Actinidia05509' => 'ach', 'Actinidia24180' => 'ach', 'Actinidia26906' => 'ach', 'Actinidia37097' => 'ach', 'Actinidia38249' => 'ach', 'Ah.01g003470' => 'amhyb', 'Ah.01g004580' => 'amhyb', 'Ah.01g014850' => 'amhyb', 'Ah.01g016830' => 'amhyb', 'Ah.14g088000' => 'amhyb', 'AL1G22980' => 'aly', 'AL3G18990' => 'aly', 'AL4G22440' => 'aly', 'AL4G33180' => 'aly', 'AL5G22920' => 'aly', 'AL6G33660' => 'aly', 'AL8G20720' => 'aly', 'Aqoxy1G00935' => 'aox', 'Aqoxy1G02094' => 'aox', 'Aqoxy2G01239' => 'aox', 'Aqoxy4G01870' => 'aox', 'Aqoxy7G00450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.36ZVTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71EM27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5D6C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH3WRE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3NCM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RIM768' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YB5YRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z36GDV' => 'arhy', 'AT1G08250' => 'ath', 'AT1G11790' => 'ath', 'AT2G27820' => 'ath', 'AT3G07630' => 'ath', 'AT3G44720' => 'ath', 'AT5G22630' => 'ath', 'ATR0693G304' => 'atr', 'ATR0794G109' => 'atr', 'ATR0820G120' => 'atr', 'ATR1159G064' => 'atr', 'Atru.chr10.2239' => 'acertr', 'Atru.chr3.3371' => 'acertr', 'Atru.chr6.3202' => 'acertr', 'AUR62006499' => 'cqu', 'AUR62012718' => 'cqu', 'AUR62021938' => 'cqu', 'AUR62023932' => 'cqu', 'AUR62025034' => 'cqu', 'AUR62025035' => 'cqu', 'AUR62038307' => 'cqu', 'AUR62043466' => 'cqu', 'BcaB02g10748' => 'bca', 'BcaB03g13231' => 'bca', 'BcaB03g14689' => 'bca', 'BcaB05g22716' => 'bca', 'BcaB06g28172' => 'bca', 'BcaB08g36413' => 'bca', 'BcaC01g02186' => 'bca', 'BcaC01g04272' => 'bca', 'BcaC02g08080' => 'bca', 'BcaC02g08227' => 'bca', 'BcaC03g13901' => 'bca', 'BcaC04g19593' => 'bca', 'BcaC04g20874' => 'bca', 'BcaC05g29557' => 'bca', 'BcaC06g35505' => 'bca', 'BcaC07g41954' => 'bca', 'BcaC07g41955' => 'bca', 'BcaC07g41956' => 'bca', 'BcaC07g42519' => 'bca', 'BcaC07g42520' => 'bca', 'BcaC07g42523' => 'bca', 'BcaC07g42524' => 'bca', 'BcaC07g42525' => 'bca', 'BcaC08g47480' => 'bca', 'BcaC08g47481' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00530' => 'bna', 'BolC2t07178H' => 'bol', 'BolC3t16567H' => 'bol', 'BolC4t27234H' => 'bol', 'BolC5t29728H' => 'bol', 'BolC5t34622H' => 'bol', 'BolC6t40321H' => 'bol', 'BolC7t42028H' => 'bol', 'BolC8t49125H' => 'bol', 'BolC8t52538H' => 'bol', 'BolC8t52539H' => 'bol', 'BolC9t56681H' => 'bol', 'BolC9t58266H' => 'bol', 'BolSC21t60294H' => 'bol', 'BraA02t05670Z' => 'bra', 'BraA03t12716Z' => 'bra', 'BraA04t17685Z' => 'bra', 'BraA05t22788Z' => 'bra', 'BraA06t24032Z' => 'bra', 'BraA06t25625Z' => 'bra', 'BraA07t27930Z' => 'bra', 'BraA08t35242Z' => 'bra', 'BraA09t38609Z' => 'bra', 'BraA10t43905Z' => 'bra', 'C02p11060' => 'bna', 'C03p42990' => 'bna', 'C03p67310' => 'bna', 'C04p56990' => 'bna', 'C04p58660' => 'bna', 'C05p09890' => 'bna', 'C05p59680' => 'bna', 'C06p19830' => 'bna', 'C06p53040' => 'bna', 'C07p15230' => 'bna', 'C08p50070' => 'bna', 'C08p50090' => 'bna', 'C09p38330' => 'bna', 'C09p53940' => 'bna', 'CAN.G1014.1' => 'can', 'CAN.G644.30' => 'can', 'CAN.G84.47' => 'can', 'CAN.G919.8' => 'can', 'CANSAT54G0113' => 'cansat', 'CANSAT54G1286' => 'cansat', 'CANSAT64G1020' => 'cansat', 'CARHR008080' => 'chi', 'CARHR008090' => 'chi', 'CARHR012130' => 'chi', 'CARHR038390' => 'chi', 'CARHR082330' => 'chi', 'CARHR120520' => 'chi', 'CARHR151470' => 'chi', 'CARHR190950' => 'chi', 'Carub.0001s0760' => 'cru', 'Carub.0001s1146' => 'cru', 'Carub.0003s0721' => 'cru', 'Carub.0004s0858' => 'cru', 'Carub.0005s1040' => 'cru', 'Carub.0006s2035' => 'cru', 'Carub.0015s0005' => 'cru', 'Ca_01607_v3' => 'car', 'Ca_01677_v3' => 'car', 'Ca_06087_v3' => 'car', 'Ca_19238_v3' => 'car', 'Ca_19373_v3' => 'car', 'Ca_21079_v3' => 'car', 'CBR_g54016' => 'cbr', 'CBR_g54018' => 'cbr', 'CBR_g54020' => 'cbr', 'Cc01_g09780' => 'ccan', 'Cc01_g11680' => 'ccan', 'Cc02_g15610' => 'ccan', 'Cc05_g04350' => 'ccan', 'Cc09_g01580' => 'ccan', 'CDE01G0795' => 'cde', 'CDE02G2024' => 'cde', 'CDE02G2260' => 'cde', 'CDE02G4561' => 'cde', 'CDE05G2733' => 'cde', 'CDE05G3422' => 'cde', 'CDE06G2003' => 'cde', 'CDE08G0576' => 'cde', 'CDE09G0048' => 'cde', 'CDE11G0805' => 'cde', 'Cfa003644' => 'cfa', 'Cfa006290' => 'cfa', 'Cfa010080' => 'cfa', 'Cfa011376' => 'cfa', 'Cfa011576' => 'cfa', 'Cfa011577' => 'cfa', 'Cfa014389' => 'cfa', 'Ciclev10006044m.g' => 'ccl', 'Ciclev10006954m.g' => 'ccl', 'Ciclev10015131m.g' => 'ccl', 'Ciclev10015580m.g' => 'ccl', 'Ciclev10028359m.g' => 'ccl', 'Ciclev10028573m.g' => 'ccl', 'CiPaw.03G159300' => 'cil', 'CiPaw.04G115100' => 'cil', 'CiPaw.09G092800' => 'cil', 'CiPaw.10G071800' => 'cil', 'CiPaw.13G105800' => 'cil', 'CiPaw.13G141000' => 'cil', 'CiPaw.14G103400' => 'cil', 'ClCG01G012700' => 'cla', 'ClCG01G012720' => 'cla', 'ClCG01G021920' => 'cla', 'ClCG02G008870' => 'cla', 'ClCG02G020840' => 'cla', 'ClCG02G021930' => 'cla', 'COL.COLO4_19302' => 'col', 'COL.COLO4_25262' => 'col', 'COL.COLO4_31788' => 'col', 'Cpa.g.c34684' => 'cpa', 'Cpa.g.c36520.1' => 'cpa', 'Cpa.g.c45626' => 'cpa', 'Cpa.g.sc121.17' => 'cpa', 'Cpa.g.sc13.22' => 'cpa', 'Cpa.g.sc87.88' => 'cpa', 'Cre06.g261800' => 'cre', 'CsaV3_1G014500' => 'csa', 'CsaV3_1G014510' => 'csa', 'CsaV3_2G034880' => 'csa', 'CsaV3_6G014760' => 'csa', 'CsaV3_6G021500' => 'csa', 'CsaV3_6G048980' => 'csa', 'CSS0002511' => 'camsi', 'CSS0007556' => 'camsi', 'CSS0008532' => 'camsi', 'CSS0009709' => 'camsi', 'CSS0010486' => 'camsi', 'CSS0016768' => 'camsi', 'CSS0023512' => 'camsi', 'CSS0025341' => 'camsi', 'CSS0027999' => 'camsi', 'CSS0028944' => 'camsi', 'CSS0032292' => 'camsi', 'CSS0032464' => 'camsi', 'CSS0037153' => 'camsi', 'CSS0039256' => 'camsi', 'CSS0048392' => 'camsi', 'CSS0050458' => 'camsi', 'DCAR_004224' => 'dca', 'DCAR_006147' => 'dca', 'DCAR_006465' => 'dca', 'DCAR_008159' => 'dca', 'DCAR_012164' => 'dca', 'DCAR_019764' => 'dca', 'Dinv05418' => 'din', 'Dinv10839' => 'din', 'Dinv12521' => 'din', 'Dinv13900' => 'din', 'Dinv29426' => 'din', 'Duzib150G0263' => 'dzi', 'Duzib168G1178' => 'dzi', 'Duzib168G1924' => 'dzi', 'Duzib170G0299' => 'dzi', 'Duzib170G0813' => 'dzi', 'Duzib235G1128' => 'dzi', 'Duzib248G1060' => 'dzi', 'ECA232G1910' => 'eca', 'ECA233G4621' => 'eca', 'ECA238G1216' => 'eca', 'ECA238G1784' => 'eca', 'ECA248G1242' => 'eca', 'EL10Ac8g20071' => 'bvu', 'EL10Ac9g21086' => 'bvu', 'EL10Ac9g22407' => 'bvu', 'EL10Ac9g22412' => 'bvu', 'Eucgr.A01119' => 'egr', 'Eucgr.E04043' => 'egr', 'Eucgr.J00428' => 'egr', 'Eucgr.J00958' => 'egr', 'FAN11G3091' => 'fan', 'FAN11G3651' => 'fan', 'FAN16G2566' => 'fan', 'FAN21G3155' => 'fan', 'FAN21G3400' => 'fan', 'FAN21G3543' => 'fan', 'FAN25G0234' => 'fan', 'FAN25G1422' => 'fan', 'FAN25G3392' => 'fan', 'FvH4_3g01940' => 'fve', 'FvH4_3g29870' => 'fve', 'FvH4_3g33680' => 'fve', 'Glyma.09G004200' => 'gma', 'Glyma.11G151288' => 'gma', 'Glyma.11G189100' => 'gma', 'Glyma.12G072500' => 'gma', 'Glyma.12G085500' => 'gma', 'Glyma.12G181800' => 'gma', 'Glyma.12G193000' => 'gma', 'Glyma.13G309300' => 'gma', 'Glyma.13G319000' => 'gma', 'Glyma.17G012600' => 'gma', 'Gohir.A06G148600' => 'ghi', 'Gohir.A07G115800' => 'ghi', 'Gohir.A08G003600' => 'ghi', 'Gohir.A09G093300' => 'ghi', 'Gohir.A09G105400' => 'ghi', 'Gohir.A09G105500' => 'ghi', 'Gohir.D06G154600' => 'ghi', 'Gohir.D07G120200' => 'ghi', 'Gohir.D08G013900' => 'ghi', 'Gohir.D09G093100' => 'ghi', 'Gohir.D09G102200' => 'ghi', 'Gohir.D09G102300' => 'ghi', 'Gorai.001G129400' => 'gra', 'Gorai.004G008200' => 'gra', 'Gorai.006G109800' => 'gra', 'Gorai.006G119500' => 'gra', 'Gorai.006G121300' => 'gra', 'Gorai.010G180700' => 'gra', 'GSVIVG01012716001' => 'vvi', 'GSVIVG01025118001' => 'vvi', 'GSVIVG01030439001' => 'vvi', 'GSVIVG01031397001' => 'vvi', 'HanXRQChr01g0004201' => 'han', 'HanXRQChr02g0054941' => 'han', 'HanXRQChr05g0141811' => 'han', 'HanXRQChr07g0197751' => 'han', 'HanXRQChr11g0346691' => 'han', 'HanXRQChr13g0396971' => 'han', 'HanXRQChr14g0432951' => 'han', 'HanXRQChr14g0452001' => 'han', 'HanXRQChr15g0496681' => 'han', 'HanXRQChr17g0557491' => 'han', 'HanXRQChr17g0557501' => 'han', 'Haze_06809' => 'cav', 'Haze_12852' => 'cav', 'Haze_15850' => 'cav', 'Haze_23446' => 'cav', 'Haze_23942' => 'cav', 'Haze_23943' => 'cav', 'Hma1.2p1_0091F.1_g046450' => 'hma', 'Hma1.2p1_0128F.1_g059910' => 'hma', 'Hma1.2p1_0249F.1_g102260' => 'hma', 'Hma1.2p1_0453F.1_g156190' => 'hma', 'Hma1.2p1_0695F.1_g204380' => 'hma', 'Hma1.2p1_0749F.1_g212650' => 'hma', 'Hma1.2p1_2156F.1_g315420' => 'hma', 'Hma1.2p1_2686F.1_g326940' => 'hma', 'HPP92_006428' => 'vpl', 'HPP92_012069' => 'vpl', 'HPP92_014129' => 'vpl', 'HPP92_014133' => 'vpl', 'HPP92_017315' => 'vpl', 'HPP92_026445' => 'vpl', 'HPP92_026446' => 'vpl', 'Hund00774' => 'sun', 'Hund07682' => 'sun', 'Hund21413' => 'sun', 'Hund23462' => 'sun', 'Hund23463' => 'sun', 'Lalb_Chr03g0027911' => 'lal', 'Lalb_Chr13g0304271' => 'lal', 'Lalb_Chr19g0137471' => 'lal', 'Lalb_Chr22g0350651' => 'lal', 'Lalb_Chr24g0395151' => 'lal', 'Lj1A1231T40' => 'lonja', 'Lj1A221T48' => 'lonja', 'Lj1C924T12' => 'lonja', 'Lj2C993G6' => 'lonja', 'Lj3g0005790' => 'lja', 'Lj3g0015432' => 'lja', 'Lj3g0017722' => 'lja', 'Lj3g0018497' => 'lja', 'Lj4g0025071' => 'lja', 'Lsat_1_v5_gn_1_129680' => 'lsa', 'Lsat_1_v5_gn_2_25321' => 'lsa', 'Lsat_1_v5_gn_2_95461' => 'lsa', 'Lsat_1_v5_gn_4_159620' => 'lsa', 'Lsat_1_v5_gn_6_41301' => 'lsa', 'Lsat_1_v5_gn_6_74660' => 'lsa', 'Lsat_1_v5_gn_7_11520' => 'lsa', 'Lsat_1_v5_gn_9_67680' => 'lsa', 'Manes.04G008300' => 'mes', 'Manes.04G008400' => 'mes', 'Manes.04G026500' => 'mes', 'Manes.10G135300' => 'mes', 'Manes.11G157300' => 'mes', 'Manes.12G074000' => 'mes', 'Manes.16G006200' => 'mes', 'Manes.17G026400' => 'mes', 'Mapoly0024s0086' => 'mpo', 'Mapoly0024s0087' => 'mpo', 'Mapoly0071s0057' => 'mpo', 'Mapoly0204s0012' => 'mpo', 'MBI04_g37681_MAGBIO' => 'mbi', 'MBI05_g17779_MAGBIO' => 'mbi', 'MBI12_g31184_MAGBIO' => 'mbi', 'MBI17_g11083_MAGBIO' => 'mbi', 'MBI18_g03883_MAGBIO' => 'mbi', 'MBI18_g28940_MAGBIO' => 'mbi', 'MCO01G690' => 'mco', 'MD03G1109900' => 'mdo', 'MD03G1134800' => 'mdo', 'MD05G1348000' => 'mdo', 'MD10G1322400' => 'mdo', 'MD11G1123300' => 'mdo', 'MD11G1157600' => 'mdo', 'Medtr2g084875' => 'mtr', 'Medtr2g088130' => 'mtr', 'Medtr4g055310' => 'mtr', 'Medtr4g061070' => 'mtr', 'Medtr4g132250' => 'mtr', 'MELO3C004795.2' => 'cme', 'MELO3C004797.2' => 'cme', 'MELO3C007396.2' => 'cme', 'MELO3C019277.2' => 'cme', 'MELO3C021449.2' => 'cme', 'MELO3C025736.2' => 'cme', 'Migut.D02175' => 'egut', 'Migut.H01573' => 'egut', 'Migut.M01327' => 'egut', 'Migut.N02513' => 'egut', 'MSTRG.14638' => 'ama', 'MSTRG.18632' => 'ama', 'MSTRG.7203' => 'ama', 'Nitab4.5_0000533g0140' => 'nta', 'Nitab4.5_0000888g0150' => 'nta', 'Nitab4.5_0001453g0040' => 'nta', 'Nitab4.5_0002827g0090' => 'nta', 'Nitab4.5_0003082g0040' => 'nta', 'Nitab4.5_0007799g0040' => 'nta', 'Nitab4.5_0008983g0010' => 'nta', 'Nitab4.5_0009017g0020' => 'nta', 'Nn1g02132' => 'nnu', 'Nn1g03492' => 'nnu', 'Nn1g03493' => 'nnu', 'Nn1g03494' => 'nnu', 'Nn1g07164' => 'nnu', 'Nn1g07291' => 'nnu', 'Nn2g10655' => 'nnu', 'Nn2g11652' => 'nnu', 'Nn2g14008' => 'nnu', 'Nn3g17476' => 'nnu', 'Nn3g17477' => 'nnu', 'Nn4g22370' => 'nnu', 'Nn4g25255' => 'nnu', 'Nn5g27755' => 'nnu', 'Nn6g34260' => 'nnu', 'Nn6g35041' => 'nnu', 'Oeu005924.1' => 'oeu', 'Oeu008383.1' => 'oeu', 'Oeu014928.1' => 'oeu', 'Oeu019889.1' => 'oeu', 'Oeu022271.1' => 'oeu', 'Oeu025271.1' => 'oeu', 'Oeu036302.1' => 'oeu', 'Oeu044100.1' => 'oeu', 'Os01g0528300' => 'osa', 'Os03g0286200' => 'osa', 'Os04g0406600' => 'osa', 'Os07g0512000' => 'osa', 'Os07g0694600' => 'osa', 'Os08g0411000' => 'osa', 'Os09g0565700' => 'osa', 'Os09g0566050' => 'osa', 'Os10g0523700' => 'osa', 'Peaxi162Scf00002g00514' => 'pax', 'Peaxi162Scf00047g01817' => 'pax', 'Peaxi162Scf00114g00001' => 'pax', 'Peaxi162Scf00147g00613' => 'pax', 'Peaxi162Scf00389g00425' => 'pax', 'PGR042G1139' => 'pgr', 'PGR042G3273' => 'pgr', 'PGR102G2180' => 'pgr', 'PGR119G0234' => 'pgr', 'PGR119G0668' => 'pgr', 'PGSC0003DMG400007122' => 'stu', 'PGSC0003DMG400016478' => 'stu', 'PGSC0003DMG400025374' => 'stu', 'PGSC0003DMG400026536' => 'stu', 'Phvul.003G079600' => 'pvu', 'Phvul.005G115600' => 'pvu', 'Phvul.005G127100' => 'pvu', 'Phvul.006G149500' => 'pvu', 'Phvul.006G149600' => 'pvu', 'Phvul.011G071800' => 'pvu', 'Phvul.011G090400' => 'pvu', 'Potri.004G013400' => 'ptr', 'Potri.004G188100' => 'ptr', 'Potri.008G195500' => 'ptr', 'Potri.009G148800' => 'ptr', 'Potri.011G004700' => 'ptr', 'Pp3c17_22810' => 'ppa', 'Pp3c18_4480' => 'ppa', 'Pp3c19_13030' => 'ppa', 'Pp3c1_33620' => 'ppa', 'Pp3c2_9380' => 'ppa', 'PRCOL_00001023' => 'pco', 'Prupe.3G216300' => 'ppe', 'Prupe.4G019500' => 'ppe', 'Prupe.6G092500' => 'ppe', 'Prupe.6G119200' => 'ppe', 'Psat0s1945g0080' => 'psa', 'Psat0s4167g0040' => 'psa', 'Psat1g185800' => 'psa', 'Psat4g006440' => 'psa', 'Psat4g006480' => 'psa', 'Psat4g168120' => 'psa', 'Psat5g255680' => 'psa', 'Psat5g261760' => 'psa', 'Psat7g222120' => 'psa', 'PSO063G7252' => 'pso', 'PSO170G4778' => 'pso', 'PSO210G2249' => 'pso', 'PSO339G2411' => 'pso', 'PSO339G2457' => 'pso', 'PSO339G2854' => 'pso', 'PSO339G4288' => 'pso', 'PSO339G4615' => 'pso', 'PSO384G2796' => 'pso', 'PSO384G2940' => 'pso', 'PSO384G4227' => 'pso', 'PSO478G1425' => 'pso', 'PSO541G3863' => 'pso', 'PSO675G0507' => 'pso', 'PSO782G0338' => 'pso', 'PSO832G0644' => 'pso', 'QL01p013664' => 'qlo', 'QL01p036598' => 'qlo', 'QL05p072984' => 'qlo', 'QL08p005768' => 'qlo', 'QL08p032743' => 'qlo', 'QL93p0073_0439' => 'qlo', 'QL93p0073_0444' => 'qlo', 'RcHm_v2.0_Chr5g0002851' => 'rch', 'RcHm_v2.0_Chr5g0055201' => 'rch', 'RcHm_v2.0_Chr5g0061191' => 'rch', 'RcHm_v2.0_Chr7g0203231' => 'rch', 'Rhsim01G0208100' => 'rsi', 'Rhsim01G0208200' => 'rsi', 'Rhsim02G0106500' => 'rsi', 'Rhsim03G0107900' => 'rsi', 'Rhsim06G0163400' => 'rsi', 'Rhsim13G0105200' => 'rsi', 'Sabra04G0006300' => 'sbr', 'Sabra04G0127000' => 'sbr', 'Sabra08G0148700' => 'sbr', 'Sabra09G0117400' => 'sbr', 'SalBow1G3326' => 'sbo', 'SalBow3G3228' => 'sbo', 'SalBow6G1634' => 'sbo', 'SalBow6G3603' => 'sbo', 'SalBow6G5266' => 'sbo', 'SalBow7G2265' => 'sbo', 'SalBow8G0850' => 'sbo', 'SalBow8G2592' => 'sbo', 'Sc05g0009240' => 'sci', 'Sc12g0002300' => 'sci', 'Sc21g0000100' => 'sci', 'Sc21g0004720' => 'sci', 'Sed0002949' => 'sed', 'Sed0004114' => 'sed', 'Sed0004306' => 'sed', 'Sed0006172' => 'sed', 'Sed0008413' => 'sed', 'Sed0013809' => 'sed', 'Sed0019556' => 'sed', 'SEGI_03570' => 'sgi', 'SEGI_07859' => 'sgi', 'SEGI_15042' => 'sgi', 'SEGI_16263' => 'sgi', 'SEGI_16552' => 'sgi', 'SEGI_24331' => 'sgi', 'SEGI_27316' => 'sgi', 'SEGI_29521' => 'sgi', 'SEGI_41342' => 'sgi', 'SGA_v2.0_scaffold27G11617' => 'sas', 'SGA_v2.0_scaffold316G48428' => 'sas', 'SGA_v2.0_scaffold49G18261' => 'sas', 'SGA_v2.0_scaffold7G03831' => 'sas', 'SGA_v2.0_scaffold93G28359' => 'sas', 'SHI02210' => 'shi', 'SHI06028' => 'shi', 'SHI06321' => 'shi', 'SMO111G0012' => 'smo', 'SMO228G0080' => 'smo', 'SMO356G0756' => 'smo', 'Solyc02g080620.3' => 'sly', 'Solyc06g074530.1' => 'sly', 'Solyc11g066890.1' => 'sly', 'Solyc11g072520.3' => 'sly', 'Sopen02g025330' => 'spe', 'Sopen06g031000' => 'spe', 'Sopen09g008240' => 'spe', 'Sopen09g025210' => 'spe', 'Sopen11g026600' => 'spe', 'Sopen11g030170' => 'spe', 'Sp1g10420' => 'spa', 'Sp3g06570' => 'spa', 'Sp4g10660' => 'spa', 'Sp5g16460' => 'spa', 'Sp6g22710' => 'spa', 'TAR365G0112' => 'tar', 'TAR369G0717' => 'tar', 'TAR374G0976' => 'tar', 'TAR623G1128' => 'tar', 'TAR626G1937' => 'tar', 'TAR627G0123' => 'tar', 'TAR628G0305' => 'tar', 'TAR636G1176' => 'tar', 'TAR636G2442' => 'tar', 'THA.LOC104800556' => 'tha', 'THA.LOC104809501' => 'tha', 'THA.LOC104815126' => 'tha', 'THA.LOC104815732' => 'tha', 'THA.LOC104823528' => 'tha', 'Thecc.02G365600' => 'tca', 'Thecc.06G222300' => 'tca', 'Thecc.09G261800' => 'tca', 'Thecc.09G291400' => 'tca', 'Thhalv10003028m.g' => 'esa', 'Thhalv10007886m.g' => 'esa', 'Thhalv10016085m.g' => 'esa', 'Thhalv10016681m.g' => 'esa', 'Thhalv10020951m.g' => 'esa', 'TPR.G15598' => 'tpr', 'TPR.G29305' => 'tpr', 'TPR.G32395' => 'tpr', 'TPR.G36998' => 'tpr', 'TPR.G4227' => 'tpr', 'TWI18G1433' => 'twi', 'TWI31G0755' => 'twi', 'TWI38G0912' => 'twi', 'TWI75G1097' => 'twi', 'TWI75G1619' => 'twi', 'TWI79G1336' => 'twi', 'unitig_0.g943' => 'ugi', 'unitig_0.g944' => 'ugi', 'unitig_22.g6646' => 'ugi', 'unitig_37.g12681' => 'ugi', 'unitig_8.g3290' => 'ugi', 'vmacro03278' => 'vma', 'vmacro12197' => 'vma', 'vmacro14478' => 'vma', 'vmacro15787' => 'vma', 'vmacro15789' => 'vma', 'vmacro15790' => 'vma', 'vmacro15806' => 'vma', 'vmacro22907' => 'vma', 'vmacro22908' => 'vma', 'vmacro22909' => 'vma', 'vmacro23108' => 'vma', 'VMungo0540G0540' => 'vmu', 'VMungo0540G2468' => 'vmu', 'VMungo1080G0390' => 'vmu', 'VMungo1080G1165' => 'vmu', 'VMungo1127G0170' => 'vmu', 'VMungo1127G2099' => 'vmu', 'VMungo1215G3013' => 'vmu', 'Zm00001eb013110' => 'zma', 'Zm00001eb084260' => 'zma', 'Zm00001eb096110' => 'zma', 'Zm00001eb217510' => 'zma', 'Zm00001eb322550' => 'zma', 'Zm00001eb390770' => 'zma', 'Zm00001eb397170' => 'zma', 'Zm00001eb404610' => 'zma', 'Zm00001eb421790' => 'zma' ) $gf_id = 'HOM05D000911' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000911' ) $data_identifier = 'HOM05D000911' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 16, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 5, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 6, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 8, 'nnu' => (int) 16, 'oeu' => (int) 8, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 5, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 16, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421790' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000911', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27780' => 'bna', 'A03p35380' => 'bna', 'A04p21160' => 'bna', 'A05p40570' => 'bna', 'A06p26900' => 'bna', 'A08p33230' => 'bna', 'A09p65960' => 'bna', 'A10p18290' => 'bna', 'Aa31LG1G12990' => 'aar', 'Aa31LG1G2980' => 'aar', 'Aa31LG4G14320' => 'aar', 'Aa31LG7G11800' => 'aar', 'Aa31sc36G50' => 'aar', 'Aa31sc36G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3721' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5459' => 'aag', 'Actinidia03028' => 'ach', 'Actinidia03753' => 'ach', 'Actinidia04187' => 'ach', 'Actinidia05509' => 'ach', 'Actinidia24180' => 'ach', 'Actinidia26906' => 'ach', 'Actinidia37097' => 'ach', 'Actinidia38249' => 'ach', 'Ah.01g003470' => 'amhyb', 'Ah.01g004580' => 'amhyb', 'Ah.01g014850' => 'amhyb', 'Ah.01g016830' => 'amhyb', 'Ah.14g088000' => 'amhyb', 'AL1G22980' => 'aly', 'AL3G18990' => 'aly', 'AL4G22440' => 'aly', 'AL4G33180' => 'aly', 'AL5G22920' => 'aly', 'AL6G33660' => 'aly', 'AL8G20720' => 'aly', 'Aqoxy1G00935' => 'aox', 'Aqoxy1G02094' => 'aox', 'Aqoxy2G01239' => 'aox', 'Aqoxy4G01870' => 'aox', 'Aqoxy7G00450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.36ZVTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71EM27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5D6C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH3WRE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3NCM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RIM768' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YB5YRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z36GDV' => 'arhy', 'AT1G08250' => 'ath', 'AT1G11790' => 'ath', 'AT2G27820' => 'ath', 'AT3G07630' => 'ath', 'AT3G44720' => 'ath', 'AT5G22630' => 'ath', 'ATR0693G304' => 'atr', 'ATR0794G109' => 'atr', 'ATR0820G120' => 'atr', 'ATR1159G064' => 'atr', 'Atru.chr10.2239' => 'acertr', 'Atru.chr3.3371' => 'acertr', 'Atru.chr6.3202' => 'acertr', 'AUR62006499' => 'cqu', 'AUR62012718' => 'cqu', 'AUR62021938' => 'cqu', 'AUR62023932' => 'cqu', 'AUR62025034' => 'cqu', 'AUR62025035' => 'cqu', 'AUR62038307' => 'cqu', 'AUR62043466' => 'cqu', 'BcaB02g10748' => 'bca', 'BcaB03g13231' => 'bca', 'BcaB03g14689' => 'bca', 'BcaB05g22716' => 'bca', 'BcaB06g28172' => 'bca', 'BcaB08g36413' => 'bca', 'BcaC01g02186' => 'bca', 'BcaC01g04272' => 'bca', 'BcaC02g08080' => 'bca', 'BcaC02g08227' => 'bca', 'BcaC03g13901' => 'bca', 'BcaC04g19593' => 'bca', 'BcaC04g20874' => 'bca', 'BcaC05g29557' => 'bca', 'BcaC06g35505' => 'bca', 'BcaC07g41954' => 'bca', 'BcaC07g41955' => 'bca', 'BcaC07g41956' => 'bca', 'BcaC07g42519' => 'bca', 'BcaC07g42520' => 'bca', 'BcaC07g42523' => 'bca', 'BcaC07g42524' => 'bca', 'BcaC07g42525' => 'bca', 'BcaC08g47480' => 'bca', 'BcaC08g47481' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00530' => 'bna', 'BolC2t07178H' => 'bol', 'BolC3t16567H' => 'bol', 'BolC4t27234H' => 'bol', 'BolC5t29728H' => 'bol', 'BolC5t34622H' => 'bol', 'BolC6t40321H' => 'bol', 'BolC7t42028H' => 'bol', 'BolC8t49125H' => 'bol', 'BolC8t52538H' => 'bol', 'BolC8t52539H' => 'bol', 'BolC9t56681H' => 'bol', 'BolC9t58266H' => 'bol', 'BolSC21t60294H' => 'bol', 'BraA02t05670Z' => 'bra', 'BraA03t12716Z' => 'bra', 'BraA04t17685Z' => 'bra', 'BraA05t22788Z' => 'bra', 'BraA06t24032Z' => 'bra', 'BraA06t25625Z' => 'bra', 'BraA07t27930Z' => 'bra', 'BraA08t35242Z' => 'bra', 'BraA09t38609Z' => 'bra', 'BraA10t43905Z' => 'bra', 'C02p11060' => 'bna', 'C03p42990' => 'bna', 'C03p67310' => 'bna', 'C04p56990' => 'bna', 'C04p58660' => 'bna', 'C05p09890' => 'bna', 'C05p59680' => 'bna', 'C06p19830' => 'bna', 'C06p53040' => 'bna', 'C07p15230' => 'bna', 'C08p50070' => 'bna', 'C08p50090' => 'bna', 'C09p38330' => 'bna', 'C09p53940' => 'bna', 'CAN.G1014.1' => 'can', 'CAN.G644.30' => 'can', 'CAN.G84.47' => 'can', 'CAN.G919.8' => 'can', 'CANSAT54G0113' => 'cansat', 'CANSAT54G1286' => 'cansat', 'CANSAT64G1020' => 'cansat', 'CARHR008080' => 'chi', 'CARHR008090' => 'chi', 'CARHR012130' => 'chi', 'CARHR038390' => 'chi', 'CARHR082330' => 'chi', 'CARHR120520' => 'chi', 'CARHR151470' => 'chi', 'CARHR190950' => 'chi', 'Carub.0001s0760' => 'cru', 'Carub.0001s1146' => 'cru', 'Carub.0003s0721' => 'cru', 'Carub.0004s0858' => 'cru', 'Carub.0005s1040' => 'cru', 'Carub.0006s2035' => 'cru', 'Carub.0015s0005' => 'cru', 'Ca_01607_v3' => 'car', 'Ca_01677_v3' => 'car', 'Ca_06087_v3' => 'car', 'Ca_19238_v3' => 'car', 'Ca_19373_v3' => 'car', 'Ca_21079_v3' => 'car', 'CBR_g54016' => 'cbr', 'CBR_g54018' => 'cbr', 'CBR_g54020' => 'cbr', 'Cc01_g09780' => 'ccan', 'Cc01_g11680' => 'ccan', 'Cc02_g15610' => 'ccan', 'Cc05_g04350' => 'ccan', 'Cc09_g01580' => 'ccan', 'CDE01G0795' => 'cde', 'CDE02G2024' => 'cde', 'CDE02G2260' => 'cde', 'CDE02G4561' => 'cde', 'CDE05G2733' => 'cde', 'CDE05G3422' => 'cde', 'CDE06G2003' => 'cde', 'CDE08G0576' => 'cde', 'CDE09G0048' => 'cde', 'CDE11G0805' => 'cde', 'Cfa003644' => 'cfa', 'Cfa006290' => 'cfa', 'Cfa010080' => 'cfa', 'Cfa011376' => 'cfa', 'Cfa011576' => 'cfa', 'Cfa011577' => 'cfa', 'Cfa014389' => 'cfa', 'Ciclev10006044m.g' => 'ccl', 'Ciclev10006954m.g' => 'ccl', 'Ciclev10015131m.g' => 'ccl', 'Ciclev10015580m.g' => 'ccl', 'Ciclev10028359m.g' => 'ccl', 'Ciclev10028573m.g' => 'ccl', 'CiPaw.03G159300' => 'cil', 'CiPaw.04G115100' => 'cil', 'CiPaw.09G092800' => 'cil', 'CiPaw.10G071800' => 'cil', 'CiPaw.13G105800' => 'cil', 'CiPaw.13G141000' => 'cil', 'CiPaw.14G103400' => 'cil', 'ClCG01G012700' => 'cla', 'ClCG01G012720' => 'cla', 'ClCG01G021920' => 'cla', 'ClCG02G008870' => 'cla', 'ClCG02G020840' => 'cla', 'ClCG02G021930' => 'cla', 'COL.COLO4_19302' => 'col', 'COL.COLO4_25262' => 'col', 'COL.COLO4_31788' => 'col', 'Cpa.g.c34684' => 'cpa', 'Cpa.g.c36520.1' => 'cpa', 'Cpa.g.c45626' => 'cpa', 'Cpa.g.sc121.17' => 'cpa', 'Cpa.g.sc13.22' => 'cpa', 'Cpa.g.sc87.88' => 'cpa', 'Cre06.g261800' => 'cre', 'CsaV3_1G014500' => 'csa', 'CsaV3_1G014510' => 'csa', 'CsaV3_2G034880' => 'csa', 'CsaV3_6G014760' => 'csa', 'CsaV3_6G021500' => 'csa', 'CsaV3_6G048980' => 'csa', 'CSS0002511' => 'camsi', 'CSS0007556' => 'camsi', 'CSS0008532' => 'camsi', 'CSS0009709' => 'camsi', 'CSS0010486' => 'camsi', 'CSS0016768' => 'camsi', 'CSS0023512' => 'camsi', 'CSS0025341' => 'camsi', 'CSS0027999' => 'camsi', 'CSS0028944' => 'camsi', 'CSS0032292' => 'camsi', 'CSS0032464' => 'camsi', 'CSS0037153' => 'camsi', 'CSS0039256' => 'camsi', 'CSS0048392' => 'camsi', 'CSS0050458' => 'camsi', 'DCAR_004224' => 'dca', 'DCAR_006147' => 'dca', 'DCAR_006465' => 'dca', 'DCAR_008159' => 'dca', 'DCAR_012164' => 'dca', 'DCAR_019764' => 'dca', 'Dinv05418' => 'din', 'Dinv10839' => 'din', 'Dinv12521' => 'din', 'Dinv13900' => 'din', 'Dinv29426' => 'din', 'Duzib150G0263' => 'dzi', 'Duzib168G1178' => 'dzi', 'Duzib168G1924' => 'dzi', 'Duzib170G0299' => 'dzi', 'Duzib170G0813' => 'dzi', 'Duzib235G1128' => 'dzi', 'Duzib248G1060' => 'dzi', 'ECA232G1910' => 'eca', 'ECA233G4621' => 'eca', 'ECA238G1216' => 'eca', 'ECA238G1784' => 'eca', 'ECA248G1242' => 'eca', 'EL10Ac8g20071' => 'bvu', 'EL10Ac9g21086' => 'bvu', 'EL10Ac9g22407' => 'bvu', 'EL10Ac9g22412' => 'bvu', 'Eucgr.A01119' => 'egr', 'Eucgr.E04043' => 'egr', 'Eucgr.J00428' => 'egr', 'Eucgr.J00958' => 'egr', 'FAN11G3091' => 'fan', 'FAN11G3651' => 'fan', 'FAN16G2566' => 'fan', 'FAN21G3155' => 'fan', 'FAN21G3400' => 'fan', 'FAN21G3543' => 'fan', 'FAN25G0234' => 'fan', 'FAN25G1422' => 'fan', 'FAN25G3392' => 'fan', 'FvH4_3g01940' => 'fve', 'FvH4_3g29870' => 'fve', 'FvH4_3g33680' => 'fve', 'Glyma.09G004200' => 'gma', 'Glyma.11G151288' => 'gma', 'Glyma.11G189100' => 'gma', 'Glyma.12G072500' => 'gma', 'Glyma.12G085500' => 'gma', 'Glyma.12G181800' => 'gma', 'Glyma.12G193000' => 'gma', 'Glyma.13G309300' => 'gma', 'Glyma.13G319000' => 'gma', 'Glyma.17G012600' => 'gma', 'Gohir.A06G148600' => 'ghi', 'Gohir.A07G115800' => 'ghi', 'Gohir.A08G003600' => 'ghi', 'Gohir.A09G093300' => 'ghi', 'Gohir.A09G105400' => 'ghi', 'Gohir.A09G105500' => 'ghi', 'Gohir.D06G154600' => 'ghi', 'Gohir.D07G120200' => 'ghi', 'Gohir.D08G013900' => 'ghi', 'Gohir.D09G093100' => 'ghi', 'Gohir.D09G102200' => 'ghi', 'Gohir.D09G102300' => 'ghi', 'Gorai.001G129400' => 'gra', 'Gorai.004G008200' => 'gra', 'Gorai.006G109800' => 'gra', 'Gorai.006G119500' => 'gra', 'Gorai.006G121300' => 'gra', 'Gorai.010G180700' => 'gra', 'GSVIVG01012716001' => 'vvi', 'GSVIVG01025118001' => 'vvi', 'GSVIVG01030439001' => 'vvi', 'GSVIVG01031397001' => 'vvi', 'HanXRQChr01g0004201' => 'han', 'HanXRQChr02g0054941' => 'han', 'HanXRQChr05g0141811' => 'han', 'HanXRQChr07g0197751' => 'han', 'HanXRQChr11g0346691' => 'han', 'HanXRQChr13g0396971' => 'han', 'HanXRQChr14g0432951' => 'han', 'HanXRQChr14g0452001' => 'han', 'HanXRQChr15g0496681' => 'han', 'HanXRQChr17g0557491' => 'han', 'HanXRQChr17g0557501' => 'han', 'Haze_06809' => 'cav', 'Haze_12852' => 'cav', 'Haze_15850' => 'cav', 'Haze_23446' => 'cav', 'Haze_23942' => 'cav', 'Haze_23943' => 'cav', 'Hma1.2p1_0091F.1_g046450' => 'hma', 'Hma1.2p1_0128F.1_g059910' => 'hma', 'Hma1.2p1_0249F.1_g102260' => 'hma', 'Hma1.2p1_0453F.1_g156190' => 'hma', 'Hma1.2p1_0695F.1_g204380' => 'hma', 'Hma1.2p1_0749F.1_g212650' => 'hma', 'Hma1.2p1_2156F.1_g315420' => 'hma', 'Hma1.2p1_2686F.1_g326940' => 'hma', 'HPP92_006428' => 'vpl', 'HPP92_012069' => 'vpl', 'HPP92_014129' => 'vpl', 'HPP92_014133' => 'vpl', 'HPP92_017315' => 'vpl', 'HPP92_026445' => 'vpl', 'HPP92_026446' => 'vpl', 'Hund00774' => 'sun', 'Hund07682' => 'sun', 'Hund21413' => 'sun', 'Hund23462' => 'sun', 'Hund23463' => 'sun', 'Lalb_Chr03g0027911' => 'lal', 'Lalb_Chr13g0304271' => 'lal', 'Lalb_Chr19g0137471' => 'lal', 'Lalb_Chr22g0350651' => 'lal', 'Lalb_Chr24g0395151' => 'lal', 'Lj1A1231T40' => 'lonja', 'Lj1A221T48' => 'lonja', 'Lj1C924T12' => 'lonja', 'Lj2C993G6' => 'lonja', 'Lj3g0005790' => 'lja', 'Lj3g0015432' => 'lja', 'Lj3g0017722' => 'lja', 'Lj3g0018497' => 'lja', 'Lj4g0025071' => 'lja', 'Lsat_1_v5_gn_1_129680' => 'lsa', 'Lsat_1_v5_gn_2_25321' => 'lsa', 'Lsat_1_v5_gn_2_95461' => 'lsa', 'Lsat_1_v5_gn_4_159620' => 'lsa', 'Lsat_1_v5_gn_6_41301' => 'lsa', 'Lsat_1_v5_gn_6_74660' => 'lsa', 'Lsat_1_v5_gn_7_11520' => 'lsa', 'Lsat_1_v5_gn_9_67680' => 'lsa', 'Manes.04G008300' => 'mes', 'Manes.04G008400' => 'mes', 'Manes.04G026500' => 'mes', 'Manes.10G135300' => 'mes', 'Manes.11G157300' => 'mes', 'Manes.12G074000' => 'mes', 'Manes.16G006200' => 'mes', 'Manes.17G026400' => 'mes', 'Mapoly0024s0086' => 'mpo', 'Mapoly0024s0087' => 'mpo', 'Mapoly0071s0057' => 'mpo', 'Mapoly0204s0012' => 'mpo', 'MBI04_g37681_MAGBIO' => 'mbi', 'MBI05_g17779_MAGBIO' => 'mbi', 'MBI12_g31184_MAGBIO' => 'mbi', 'MBI17_g11083_MAGBIO' => 'mbi', 'MBI18_g03883_MAGBIO' => 'mbi', 'MBI18_g28940_MAGBIO' => 'mbi', 'MCO01G690' => 'mco', 'MD03G1109900' => 'mdo', 'MD03G1134800' => 'mdo', 'MD05G1348000' => 'mdo', 'MD10G1322400' => 'mdo', 'MD11G1123300' => 'mdo', 'MD11G1157600' => 'mdo', 'Medtr2g084875' => 'mtr', 'Medtr2g088130' => 'mtr', 'Medtr4g055310' => 'mtr', 'Medtr4g061070' => 'mtr', 'Medtr4g132250' => 'mtr', 'MELO3C004795.2' => 'cme', 'MELO3C004797.2' => 'cme', 'MELO3C007396.2' => 'cme', 'MELO3C019277.2' => 'cme', 'MELO3C021449.2' => 'cme', 'MELO3C025736.2' => 'cme', 'Migut.D02175' => 'egut', 'Migut.H01573' => 'egut', 'Migut.M01327' => 'egut', 'Migut.N02513' => 'egut', 'MSTRG.14638' => 'ama', 'MSTRG.18632' => 'ama', 'MSTRG.7203' => 'ama', 'Nitab4.5_0000533g0140' => 'nta', 'Nitab4.5_0000888g0150' => 'nta', 'Nitab4.5_0001453g0040' => 'nta', 'Nitab4.5_0002827g0090' => 'nta', 'Nitab4.5_0003082g0040' => 'nta', 'Nitab4.5_0007799g0040' => 'nta', 'Nitab4.5_0008983g0010' => 'nta', 'Nitab4.5_0009017g0020' => 'nta', 'Nn1g02132' => 'nnu', 'Nn1g03492' => 'nnu', 'Nn1g03493' => 'nnu', 'Nn1g03494' => 'nnu', 'Nn1g07164' => 'nnu', 'Nn1g07291' => 'nnu', 'Nn2g10655' => 'nnu', 'Nn2g11652' => 'nnu', 'Nn2g14008' => 'nnu', 'Nn3g17476' => 'nnu', 'Nn3g17477' => 'nnu', 'Nn4g22370' => 'nnu', 'Nn4g25255' => 'nnu', 'Nn5g27755' => 'nnu', 'Nn6g34260' => 'nnu', 'Nn6g35041' => 'nnu', 'Oeu005924.1' => 'oeu', 'Oeu008383.1' => 'oeu', 'Oeu014928.1' => 'oeu', 'Oeu019889.1' => 'oeu', 'Oeu022271.1' => 'oeu', 'Oeu025271.1' => 'oeu', 'Oeu036302.1' => 'oeu', 'Oeu044100.1' => 'oeu', 'Os01g0528300' => 'osa', 'Os03g0286200' => 'osa', 'Os04g0406600' => 'osa', 'Os07g0512000' => 'osa', 'Os07g0694600' => 'osa', 'Os08g0411000' => 'osa', 'Os09g0565700' => 'osa', 'Os09g0566050' => 'osa', 'Os10g0523700' => 'osa', 'Peaxi162Scf00002g00514' => 'pax', 'Peaxi162Scf00047g01817' => 'pax', 'Peaxi162Scf00114g00001' => 'pax', 'Peaxi162Scf00147g00613' => 'pax', 'Peaxi162Scf00389g00425' => 'pax', 'PGR042G1139' => 'pgr', 'PGR042G3273' => 'pgr', 'PGR102G2180' => 'pgr', 'PGR119G0234' => 'pgr', 'PGR119G0668' => 'pgr', 'PGSC0003DMG400007122' => 'stu', 'PGSC0003DMG400016478' => 'stu', 'PGSC0003DMG400025374' => 'stu', 'PGSC0003DMG400026536' => 'stu', 'Phvul.003G079600' => 'pvu', 'Phvul.005G115600' => 'pvu', 'Phvul.005G127100' => 'pvu', 'Phvul.006G149500' => 'pvu', 'Phvul.006G149600' => 'pvu', 'Phvul.011G071800' => 'pvu', 'Phvul.011G090400' => 'pvu', 'Potri.004G013400' => 'ptr', 'Potri.004G188100' => 'ptr', 'Potri.008G195500' => 'ptr', 'Potri.009G148800' => 'ptr', 'Potri.011G004700' => 'ptr', 'Pp3c17_22810' => 'ppa', 'Pp3c18_4480' => 'ppa', 'Pp3c19_13030' => 'ppa', 'Pp3c1_33620' => 'ppa', 'Pp3c2_9380' => 'ppa', 'PRCOL_00001023' => 'pco', 'Prupe.3G216300' => 'ppe', 'Prupe.4G019500' => 'ppe', 'Prupe.6G092500' => 'ppe', 'Prupe.6G119200' => 'ppe', 'Psat0s1945g0080' => 'psa', 'Psat0s4167g0040' => 'psa', 'Psat1g185800' => 'psa', 'Psat4g006440' => 'psa', 'Psat4g006480' => 'psa', 'Psat4g168120' => 'psa', 'Psat5g255680' => 'psa', 'Psat5g261760' => 'psa', 'Psat7g222120' => 'psa', 'PSO063G7252' => 'pso', 'PSO170G4778' => 'pso', 'PSO210G2249' => 'pso', 'PSO339G2411' => 'pso', 'PSO339G2457' => 'pso', 'PSO339G2854' => 'pso', 'PSO339G4288' => 'pso', 'PSO339G4615' => 'pso', 'PSO384G2796' => 'pso', 'PSO384G2940' => 'pso', 'PSO384G4227' => 'pso', 'PSO478G1425' => 'pso', 'PSO541G3863' => 'pso', 'PSO675G0507' => 'pso', 'PSO782G0338' => 'pso', 'PSO832G0644' => 'pso', 'QL01p013664' => 'qlo', 'QL01p036598' => 'qlo', 'QL05p072984' => 'qlo', 'QL08p005768' => 'qlo', 'QL08p032743' => 'qlo', 'QL93p0073_0439' => 'qlo', 'QL93p0073_0444' => 'qlo', 'RcHm_v2.0_Chr5g0002851' => 'rch', 'RcHm_v2.0_Chr5g0055201' => 'rch', 'RcHm_v2.0_Chr5g0061191' => 'rch', 'RcHm_v2.0_Chr7g0203231' => 'rch', 'Rhsim01G0208100' => 'rsi', 'Rhsim01G0208200' => 'rsi', 'Rhsim02G0106500' => 'rsi', 'Rhsim03G0107900' => 'rsi', 'Rhsim06G0163400' => 'rsi', 'Rhsim13G0105200' => 'rsi', 'Sabra04G0006300' => 'sbr', 'Sabra04G0127000' => 'sbr', 'Sabra08G0148700' => 'sbr', 'Sabra09G0117400' => 'sbr', 'SalBow1G3326' => 'sbo', 'SalBow3G3228' => 'sbo', 'SalBow6G1634' => 'sbo', 'SalBow6G3603' => 'sbo', 'SalBow6G5266' => 'sbo', 'SalBow7G2265' => 'sbo', 'SalBow8G0850' => 'sbo', 'SalBow8G2592' => 'sbo', 'Sc05g0009240' => 'sci', 'Sc12g0002300' => 'sci', 'Sc21g0000100' => 'sci', 'Sc21g0004720' => 'sci', 'Sed0002949' => 'sed', 'Sed0004114' => 'sed', 'Sed0004306' => 'sed', 'Sed0006172' => 'sed', 'Sed0008413' => 'sed', 'Sed0013809' => 'sed', 'Sed0019556' => 'sed', 'SEGI_03570' => 'sgi', 'SEGI_07859' => 'sgi', 'SEGI_15042' => 'sgi', 'SEGI_16263' => 'sgi', 'SEGI_16552' => 'sgi', 'SEGI_24331' => 'sgi', 'SEGI_27316' => 'sgi', 'SEGI_29521' => 'sgi', 'SEGI_41342' => 'sgi', 'SGA_v2.0_scaffold27G11617' => 'sas', 'SGA_v2.0_scaffold316G48428' => 'sas', 'SGA_v2.0_scaffold49G18261' => 'sas', 'SGA_v2.0_scaffold7G03831' => 'sas', 'SGA_v2.0_scaffold93G28359' => 'sas', 'SHI02210' => 'shi', 'SHI06028' => 'shi', 'SHI06321' => 'shi', 'SMO111G0012' => 'smo', 'SMO228G0080' => 'smo', 'SMO356G0756' => 'smo', 'Solyc02g080620.3' => 'sly', 'Solyc06g074530.1' => 'sly', 'Solyc11g066890.1' => 'sly', 'Solyc11g072520.3' => 'sly', 'Sopen02g025330' => 'spe', 'Sopen06g031000' => 'spe', 'Sopen09g008240' => 'spe', 'Sopen09g025210' => 'spe', 'Sopen11g026600' => 'spe', 'Sopen11g030170' => 'spe', 'Sp1g10420' => 'spa', 'Sp3g06570' => 'spa', 'Sp4g10660' => 'spa', 'Sp5g16460' => 'spa', 'Sp6g22710' => 'spa', 'TAR365G0112' => 'tar', 'TAR369G0717' => 'tar', 'TAR374G0976' => 'tar', 'TAR623G1128' => 'tar', 'TAR626G1937' => 'tar', 'TAR627G0123' => 'tar', 'TAR628G0305' => 'tar', 'TAR636G1176' => 'tar', 'TAR636G2442' => 'tar', 'THA.LOC104800556' => 'tha', 'THA.LOC104809501' => 'tha', 'THA.LOC104815126' => 'tha', 'THA.LOC104815732' => 'tha', 'THA.LOC104823528' => 'tha', 'Thecc.02G365600' => 'tca', 'Thecc.06G222300' => 'tca', 'Thecc.09G261800' => 'tca', 'Thecc.09G291400' => 'tca', 'Thhalv10003028m.g' => 'esa', 'Thhalv10007886m.g' => 'esa', 'Thhalv10016085m.g' => 'esa', 'Thhalv10016681m.g' => 'esa', 'Thhalv10020951m.g' => 'esa', 'TPR.G15598' => 'tpr', 'TPR.G29305' => 'tpr', 'TPR.G32395' => 'tpr', 'TPR.G36998' => 'tpr', 'TPR.G4227' => 'tpr', 'TWI18G1433' => 'twi', 'TWI31G0755' => 'twi', 'TWI38G0912' => 'twi', 'TWI75G1097' => 'twi', 'TWI75G1619' => 'twi', 'TWI79G1336' => 'twi', 'unitig_0.g943' => 'ugi', 'unitig_0.g944' => 'ugi', 'unitig_22.g6646' => 'ugi', 'unitig_37.g12681' => 'ugi', 'unitig_8.g3290' => 'ugi', 'vmacro03278' => 'vma', 'vmacro12197' => 'vma', 'vmacro14478' => 'vma', 'vmacro15787' => 'vma', 'vmacro15789' => 'vma', 'vmacro15790' => 'vma', 'vmacro15806' => 'vma', 'vmacro22907' => 'vma', 'vmacro22908' => 'vma', 'vmacro22909' => 'vma', 'vmacro23108' => 'vma', 'VMungo0540G0540' => 'vmu', 'VMungo0540G2468' => 'vmu', 'VMungo1080G0390' => 'vmu', 'VMungo1080G1165' => 'vmu', 'VMungo1127G0170' => 'vmu', 'VMungo1127G2099' => 'vmu', 'VMungo1215G3013' => 'vmu', 'Zm00001eb013110' => 'zma', 'Zm00001eb084260' => 'zma', 'Zm00001eb096110' => 'zma', 'Zm00001eb217510' => 'zma', 'Zm00001eb322550' => 'zma', 'Zm00001eb390770' => 'zma', 'Zm00001eb397170' => 'zma', 'Zm00001eb404610' => 'zma', 'Zm00001eb421790' => 'zma' ), 'gf_id' => 'HOM05D000911', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000911' ), 'data_identifier' => 'HOM05D000911', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000911', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27780' => 'bna', 'A03p35380' => 'bna', 'A04p21160' => 'bna', 'A05p40570' => 'bna', 'A06p26900' => 'bna', 'A08p33230' => 'bna', 'A09p65960' => 'bna', 'A10p18290' => 'bna', 'Aa31LG1G12990' => 'aar', 'Aa31LG1G2980' => 'aar', 'Aa31LG4G14320' => 'aar', 'Aa31LG7G11800' => 'aar', 'Aa31sc36G50' => 'aar', 'Aa31sc36G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3721' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5459' => 'aag', 'Actinidia03028' => 'ach', 'Actinidia03753' => 'ach', 'Actinidia04187' => 'ach', 'Actinidia05509' => 'ach', 'Actinidia24180' => 'ach', 'Actinidia26906' => 'ach', 'Actinidia37097' => 'ach', 'Actinidia38249' => 'ach', 'Ah.01g003470' => 'amhyb', 'Ah.01g004580' => 'amhyb', 'Ah.01g014850' => 'amhyb', 'Ah.01g016830' => 'amhyb', 'Ah.14g088000' => 'amhyb', 'AL1G22980' => 'aly', 'AL3G18990' => 'aly', 'AL4G22440' => 'aly', 'AL4G33180' => 'aly', 'AL5G22920' => 'aly', 'AL6G33660' => 'aly', 'AL8G20720' => 'aly', 'Aqoxy1G00935' => 'aox', 'Aqoxy1G02094' => 'aox', 'Aqoxy2G01239' => 'aox', 'Aqoxy4G01870' => 'aox', 'Aqoxy7G00450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.36ZVTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71EM27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5D6C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH3WRE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3NCM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RIM768' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YB5YRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z36GDV' => 'arhy', 'AT1G08250' => 'ath', 'AT1G11790' => 'ath', 'AT2G27820' => 'ath', 'AT3G07630' => 'ath', 'AT3G44720' => 'ath', 'AT5G22630' => 'ath', 'ATR0693G304' => 'atr', 'ATR0794G109' => 'atr', 'ATR0820G120' => 'atr', 'ATR1159G064' => 'atr', 'Atru.chr10.2239' => 'acertr', 'Atru.chr3.3371' => 'acertr', 'Atru.chr6.3202' => 'acertr', 'AUR62006499' => 'cqu', 'AUR62012718' => 'cqu', 'AUR62021938' => 'cqu', 'AUR62023932' => 'cqu', 'AUR62025034' => 'cqu', 'AUR62025035' => 'cqu', 'AUR62038307' => 'cqu', 'AUR62043466' => 'cqu', 'BcaB02g10748' => 'bca', 'BcaB03g13231' => 'bca', 'BcaB03g14689' => 'bca', 'BcaB05g22716' => 'bca', 'BcaB06g28172' => 'bca', 'BcaB08g36413' => 'bca', 'BcaC01g02186' => 'bca', 'BcaC01g04272' => 'bca', 'BcaC02g08080' => 'bca', 'BcaC02g08227' => 'bca', 'BcaC03g13901' => 'bca', 'BcaC04g19593' => 'bca', 'BcaC04g20874' => 'bca', 'BcaC05g29557' => 'bca', 'BcaC06g35505' => 'bca', 'BcaC07g41954' => 'bca', 'BcaC07g41955' => 'bca', 'BcaC07g41956' => 'bca', 'BcaC07g42519' => 'bca', 'BcaC07g42520' => 'bca', 'BcaC07g42523' => 'bca', 'BcaC07g42524' => 'bca', 'BcaC07g42525' => 'bca', 'BcaC08g47480' => 'bca', 'BcaC08g47481' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00530' => 'bna', 'BolC2t07178H' => 'bol', 'BolC3t16567H' => 'bol', 'BolC4t27234H' => 'bol', 'BolC5t29728H' => 'bol', 'BolC5t34622H' => 'bol', 'BolC6t40321H' => 'bol', 'BolC7t42028H' => 'bol', 'BolC8t49125H' => 'bol', 'BolC8t52538H' => 'bol', 'BolC8t52539H' => 'bol', 'BolC9t56681H' => 'bol', 'BolC9t58266H' => 'bol', 'BolSC21t60294H' => 'bol', 'BraA02t05670Z' => 'bra', 'BraA03t12716Z' => 'bra', 'BraA04t17685Z' => 'bra', 'BraA05t22788Z' => 'bra', 'BraA06t24032Z' => 'bra', 'BraA06t25625Z' => 'bra', 'BraA07t27930Z' => 'bra', 'BraA08t35242Z' => 'bra', 'BraA09t38609Z' => 'bra', 'BraA10t43905Z' => 'bra', 'C02p11060' => 'bna', 'C03p42990' => 'bna', 'C03p67310' => 'bna', 'C04p56990' => 'bna', 'C04p58660' => 'bna', 'C05p09890' => 'bna', 'C05p59680' => 'bna', 'C06p19830' => 'bna', 'C06p53040' => 'bna', 'C07p15230' => 'bna', 'C08p50070' => 'bna', 'C08p50090' => 'bna', 'C09p38330' => 'bna', 'C09p53940' => 'bna', 'CAN.G1014.1' => 'can', 'CAN.G644.30' => 'can', 'CAN.G84.47' => 'can', 'CAN.G919.8' => 'can', 'CANSAT54G0113' => 'cansat', 'CANSAT54G1286' => 'cansat', 'CANSAT64G1020' => 'cansat', 'CARHR008080' => 'chi', 'CARHR008090' => 'chi', 'CARHR012130' => 'chi', 'CARHR038390' => 'chi', 'CARHR082330' => 'chi', 'CARHR120520' => 'chi', 'CARHR151470' => 'chi', 'CARHR190950' => 'chi', 'Carub.0001s0760' => 'cru', 'Carub.0001s1146' => 'cru', 'Carub.0003s0721' => 'cru', 'Carub.0004s0858' => 'cru', 'Carub.0005s1040' => 'cru', 'Carub.0006s2035' => 'cru', 'Carub.0015s0005' => 'cru', 'Ca_01607_v3' => 'car', 'Ca_01677_v3' => 'car', 'Ca_06087_v3' => 'car', 'Ca_19238_v3' => 'car', 'Ca_19373_v3' => 'car', 'Ca_21079_v3' => 'car', 'CBR_g54016' => 'cbr', 'CBR_g54018' => 'cbr', 'CBR_g54020' => 'cbr', 'Cc01_g09780' => 'ccan', 'Cc01_g11680' => 'ccan', 'Cc02_g15610' => 'ccan', 'Cc05_g04350' => 'ccan', 'Cc09_g01580' => 'ccan', 'CDE01G0795' => 'cde', 'CDE02G2024' => 'cde', 'CDE02G2260' => 'cde', 'CDE02G4561' => 'cde', 'CDE05G2733' => 'cde', 'CDE05G3422' => 'cde', 'CDE06G2003' => 'cde', 'CDE08G0576' => 'cde', 'CDE09G0048' => 'cde', 'CDE11G0805' => 'cde', 'Cfa003644' => 'cfa', 'Cfa006290' => 'cfa', 'Cfa010080' => 'cfa', 'Cfa011376' => 'cfa', 'Cfa011576' => 'cfa', 'Cfa011577' => 'cfa', 'Cfa014389' => 'cfa', 'Ciclev10006044m.g' => 'ccl', 'Ciclev10006954m.g' => 'ccl', 'Ciclev10015131m.g' => 'ccl', 'Ciclev10015580m.g' => 'ccl', 'Ciclev10028359m.g' => 'ccl', 'Ciclev10028573m.g' => 'ccl', 'CiPaw.03G159300' => 'cil', 'CiPaw.04G115100' => 'cil', 'CiPaw.09G092800' => 'cil', 'CiPaw.10G071800' => 'cil', 'CiPaw.13G105800' => 'cil', 'CiPaw.13G141000' => 'cil', 'CiPaw.14G103400' => 'cil', 'ClCG01G012700' => 'cla', 'ClCG01G012720' => 'cla', 'ClCG01G021920' => 'cla', 'ClCG02G008870' => 'cla', 'ClCG02G020840' => 'cla', 'ClCG02G021930' => 'cla', 'COL.COLO4_19302' => 'col', 'COL.COLO4_25262' => 'col', 'COL.COLO4_31788' => 'col', 'Cpa.g.c34684' => 'cpa', 'Cpa.g.c36520.1' => 'cpa', 'Cpa.g.c45626' => 'cpa', 'Cpa.g.sc121.17' => 'cpa', 'Cpa.g.sc13.22' => 'cpa', 'Cpa.g.sc87.88' => 'cpa', 'Cre06.g261800' => 'cre', 'CsaV3_1G014500' => 'csa', 'CsaV3_1G014510' => 'csa', 'CsaV3_2G034880' => 'csa', 'CsaV3_6G014760' => 'csa', 'CsaV3_6G021500' => 'csa', 'CsaV3_6G048980' => 'csa', 'CSS0002511' => 'camsi', 'CSS0007556' => 'camsi', 'CSS0008532' => 'camsi', 'CSS0009709' => 'camsi', 'CSS0010486' => 'camsi', 'CSS0016768' => 'camsi', 'CSS0023512' => 'camsi', 'CSS0025341' => 'camsi', 'CSS0027999' => 'camsi', 'CSS0028944' => 'camsi', 'CSS0032292' => 'camsi', 'CSS0032464' => 'camsi', 'CSS0037153' => 'camsi', 'CSS0039256' => 'camsi', 'CSS0048392' => 'camsi', 'CSS0050458' => 'camsi', 'DCAR_004224' => 'dca', 'DCAR_006147' => 'dca', 'DCAR_006465' => 'dca', 'DCAR_008159' => 'dca', 'DCAR_012164' => 'dca', 'DCAR_019764' => 'dca', 'Dinv05418' => 'din', 'Dinv10839' => 'din', 'Dinv12521' => 'din', 'Dinv13900' => 'din', 'Dinv29426' => 'din', 'Duzib150G0263' => 'dzi', 'Duzib168G1178' => 'dzi', 'Duzib168G1924' => 'dzi', 'Duzib170G0299' => 'dzi', 'Duzib170G0813' => 'dzi', 'Duzib235G1128' => 'dzi', 'Duzib248G1060' => 'dzi', 'ECA232G1910' => 'eca', 'ECA233G4621' => 'eca', 'ECA238G1216' => 'eca', 'ECA238G1784' => 'eca', 'ECA248G1242' => 'eca', 'EL10Ac8g20071' => 'bvu', 'EL10Ac9g21086' => 'bvu', 'EL10Ac9g22407' => 'bvu', 'EL10Ac9g22412' => 'bvu', 'Eucgr.A01119' => 'egr', 'Eucgr.E04043' => 'egr', 'Eucgr.J00428' => 'egr', 'Eucgr.J00958' => 'egr', 'FAN11G3091' => 'fan', 'FAN11G3651' => 'fan', 'FAN16G2566' => 'fan', 'FAN21G3155' => 'fan', 'FAN21G3400' => 'fan', 'FAN21G3543' => 'fan', 'FAN25G0234' => 'fan', 'FAN25G1422' => 'fan', 'FAN25G3392' => 'fan', 'FvH4_3g01940' => 'fve', 'FvH4_3g29870' => 'fve', 'FvH4_3g33680' => 'fve', 'Glyma.09G004200' => 'gma', 'Glyma.11G151288' => 'gma', 'Glyma.11G189100' => 'gma', 'Glyma.12G072500' => 'gma', 'Glyma.12G085500' => 'gma', 'Glyma.12G181800' => 'gma', 'Glyma.12G193000' => 'gma', 'Glyma.13G309300' => 'gma', 'Glyma.13G319000' => 'gma', 'Glyma.17G012600' => 'gma', 'Gohir.A06G148600' => 'ghi', 'Gohir.A07G115800' => 'ghi', 'Gohir.A08G003600' => 'ghi', 'Gohir.A09G093300' => 'ghi', 'Gohir.A09G105400' => 'ghi', 'Gohir.A09G105500' => 'ghi', 'Gohir.D06G154600' => 'ghi', 'Gohir.D07G120200' => 'ghi', 'Gohir.D08G013900' => 'ghi', 'Gohir.D09G093100' => 'ghi', 'Gohir.D09G102200' => 'ghi', 'Gohir.D09G102300' => 'ghi', 'Gorai.001G129400' => 'gra', 'Gorai.004G008200' => 'gra', 'Gorai.006G109800' => 'gra', 'Gorai.006G119500' => 'gra', 'Gorai.006G121300' => 'gra', 'Gorai.010G180700' => 'gra', 'GSVIVG01012716001' => 'vvi', 'GSVIVG01025118001' => 'vvi', 'GSVIVG01030439001' => 'vvi', 'GSVIVG01031397001' => 'vvi', 'HanXRQChr01g0004201' => 'han', 'HanXRQChr02g0054941' => 'han', 'HanXRQChr05g0141811' => 'han', 'HanXRQChr07g0197751' => 'han', 'HanXRQChr11g0346691' => 'han', 'HanXRQChr13g0396971' => 'han', 'HanXRQChr14g0432951' => 'han', 'HanXRQChr14g0452001' => 'han', 'HanXRQChr15g0496681' => 'han', 'HanXRQChr17g0557491' => 'han', 'HanXRQChr17g0557501' => 'han', 'Haze_06809' => 'cav', 'Haze_12852' => 'cav', 'Haze_15850' => 'cav', 'Haze_23446' => 'cav', 'Haze_23942' => 'cav', 'Haze_23943' => 'cav', 'Hma1.2p1_0091F.1_g046450' => 'hma', 'Hma1.2p1_0128F.1_g059910' => 'hma', 'Hma1.2p1_0249F.1_g102260' => 'hma', 'Hma1.2p1_0453F.1_g156190' => 'hma', 'Hma1.2p1_0695F.1_g204380' => 'hma', 'Hma1.2p1_0749F.1_g212650' => 'hma', 'Hma1.2p1_2156F.1_g315420' => 'hma', 'Hma1.2p1_2686F.1_g326940' => 'hma', 'HPP92_006428' => 'vpl', 'HPP92_012069' => 'vpl', 'HPP92_014129' => 'vpl', 'HPP92_014133' => 'vpl', 'HPP92_017315' => 'vpl', 'HPP92_026445' => 'vpl', 'HPP92_026446' => 'vpl', 'Hund00774' => 'sun', 'Hund07682' => 'sun', 'Hund21413' => 'sun', 'Hund23462' => 'sun', 'Hund23463' => 'sun', 'Lalb_Chr03g0027911' => 'lal', 'Lalb_Chr13g0304271' => 'lal', 'Lalb_Chr19g0137471' => 'lal', 'Lalb_Chr22g0350651' => 'lal', 'Lalb_Chr24g0395151' => 'lal', 'Lj1A1231T40' => 'lonja', 'Lj1A221T48' => 'lonja', 'Lj1C924T12' => 'lonja', 'Lj2C993G6' => 'lonja', 'Lj3g0005790' => 'lja', 'Lj3g0015432' => 'lja', 'Lj3g0017722' => 'lja', 'Lj3g0018497' => 'lja', 'Lj4g0025071' => 'lja', 'Lsat_1_v5_gn_1_129680' => 'lsa', 'Lsat_1_v5_gn_2_25321' => 'lsa', 'Lsat_1_v5_gn_2_95461' => 'lsa', 'Lsat_1_v5_gn_4_159620' => 'lsa', 'Lsat_1_v5_gn_6_41301' => 'lsa', 'Lsat_1_v5_gn_6_74660' => 'lsa', 'Lsat_1_v5_gn_7_11520' => 'lsa', 'Lsat_1_v5_gn_9_67680' => 'lsa', 'Manes.04G008300' => 'mes', 'Manes.04G008400' => 'mes', 'Manes.04G026500' => 'mes', 'Manes.10G135300' => 'mes', 'Manes.11G157300' => 'mes', 'Manes.12G074000' => 'mes', 'Manes.16G006200' => 'mes', 'Manes.17G026400' => 'mes', 'Mapoly0024s0086' => 'mpo', 'Mapoly0024s0087' => 'mpo', 'Mapoly0071s0057' => 'mpo', 'Mapoly0204s0012' => 'mpo', 'MBI04_g37681_MAGBIO' => 'mbi', 'MBI05_g17779_MAGBIO' => 'mbi', 'MBI12_g31184_MAGBIO' => 'mbi', 'MBI17_g11083_MAGBIO' => 'mbi', 'MBI18_g03883_MAGBIO' => 'mbi', 'MBI18_g28940_MAGBIO' => 'mbi', 'MCO01G690' => 'mco', 'MD03G1109900' => 'mdo', 'MD03G1134800' => 'mdo', 'MD05G1348000' => 'mdo', 'MD10G1322400' => 'mdo', 'MD11G1123300' => 'mdo', 'MD11G1157600' => 'mdo', 'Medtr2g084875' => 'mtr', 'Medtr2g088130' => 'mtr', 'Medtr4g055310' => 'mtr', 'Medtr4g061070' => 'mtr', 'Medtr4g132250' => 'mtr', 'MELO3C004795.2' => 'cme', 'MELO3C004797.2' => 'cme', 'MELO3C007396.2' => 'cme', 'MELO3C019277.2' => 'cme', 'MELO3C021449.2' => 'cme', 'MELO3C025736.2' => 'cme', 'Migut.D02175' => 'egut', 'Migut.H01573' => 'egut', 'Migut.M01327' => 'egut', 'Migut.N02513' => 'egut', 'MSTRG.14638' => 'ama', 'MSTRG.18632' => 'ama', 'MSTRG.7203' => 'ama', 'Nitab4.5_0000533g0140' => 'nta', 'Nitab4.5_0000888g0150' => 'nta', 'Nitab4.5_0001453g0040' => 'nta', 'Nitab4.5_0002827g0090' => 'nta', 'Nitab4.5_0003082g0040' => 'nta', 'Nitab4.5_0007799g0040' => 'nta', 'Nitab4.5_0008983g0010' => 'nta', 'Nitab4.5_0009017g0020' => 'nta', 'Nn1g02132' => 'nnu', 'Nn1g03492' => 'nnu', 'Nn1g03493' => 'nnu', 'Nn1g03494' => 'nnu', 'Nn1g07164' => 'nnu', 'Nn1g07291' => 'nnu', 'Nn2g10655' => 'nnu', 'Nn2g11652' => 'nnu', 'Nn2g14008' => 'nnu', 'Nn3g17476' => 'nnu', 'Nn3g17477' => 'nnu', 'Nn4g22370' => 'nnu', 'Nn4g25255' => 'nnu', 'Nn5g27755' => 'nnu', 'Nn6g34260' => 'nnu', 'Nn6g35041' => 'nnu', 'Oeu005924.1' => 'oeu', 'Oeu008383.1' => 'oeu', 'Oeu014928.1' => 'oeu', 'Oeu019889.1' => 'oeu', 'Oeu022271.1' => 'oeu', 'Oeu025271.1' => 'oeu', 'Oeu036302.1' => 'oeu', 'Oeu044100.1' => 'oeu', 'Os01g0528300' => 'osa', 'Os03g0286200' => 'osa', 'Os04g0406600' => 'osa', 'Os07g0512000' => 'osa', 'Os07g0694600' => 'osa', 'Os08g0411000' => 'osa', 'Os09g0565700' => 'osa', 'Os09g0566050' => 'osa', 'Os10g0523700' => 'osa', 'Peaxi162Scf00002g00514' => 'pax', 'Peaxi162Scf00047g01817' => 'pax', 'Peaxi162Scf00114g00001' => 'pax', 'Peaxi162Scf00147g00613' => 'pax', 'Peaxi162Scf00389g00425' => 'pax', 'PGR042G1139' => 'pgr', 'PGR042G3273' => 'pgr', 'PGR102G2180' => 'pgr', 'PGR119G0234' => 'pgr', 'PGR119G0668' => 'pgr', 'PGSC0003DMG400007122' => 'stu', 'PGSC0003DMG400016478' => 'stu', 'PGSC0003DMG400025374' => 'stu', 'PGSC0003DMG400026536' => 'stu', 'Phvul.003G079600' => 'pvu', 'Phvul.005G115600' => 'pvu', 'Phvul.005G127100' => 'pvu', 'Phvul.006G149500' => 'pvu', 'Phvul.006G149600' => 'pvu', 'Phvul.011G071800' => 'pvu', 'Phvul.011G090400' => 'pvu', 'Potri.004G013400' => 'ptr', 'Potri.004G188100' => 'ptr', 'Potri.008G195500' => 'ptr', 'Potri.009G148800' => 'ptr', 'Potri.011G004700' => 'ptr', 'Pp3c17_22810' => 'ppa', 'Pp3c18_4480' => 'ppa', 'Pp3c19_13030' => 'ppa', 'Pp3c1_33620' => 'ppa', 'Pp3c2_9380' => 'ppa', 'PRCOL_00001023' => 'pco', 'Prupe.3G216300' => 'ppe', 'Prupe.4G019500' => 'ppe', 'Prupe.6G092500' => 'ppe', 'Prupe.6G119200' => 'ppe', 'Psat0s1945g0080' => 'psa', 'Psat0s4167g0040' => 'psa', 'Psat1g185800' => 'psa', 'Psat4g006440' => 'psa', 'Psat4g006480' => 'psa', 'Psat4g168120' => 'psa', 'Psat5g255680' => 'psa', 'Psat5g261760' => 'psa', 'Psat7g222120' => 'psa', 'PSO063G7252' => 'pso', 'PSO170G4778' => 'pso', 'PSO210G2249' => 'pso', 'PSO339G2411' => 'pso', 'PSO339G2457' => 'pso', 'PSO339G2854' => 'pso', 'PSO339G4288' => 'pso', 'PSO339G4615' => 'pso', 'PSO384G2796' => 'pso', 'PSO384G2940' => 'pso', 'PSO384G4227' => 'pso', 'PSO478G1425' => 'pso', 'PSO541G3863' => 'pso', 'PSO675G0507' => 'pso', 'PSO782G0338' => 'pso', 'PSO832G0644' => 'pso', 'QL01p013664' => 'qlo', 'QL01p036598' => 'qlo', 'QL05p072984' => 'qlo', 'QL08p005768' => 'qlo', 'QL08p032743' => 'qlo', 'QL93p0073_0439' => 'qlo', 'QL93p0073_0444' => 'qlo', 'RcHm_v2.0_Chr5g0002851' => 'rch', 'RcHm_v2.0_Chr5g0055201' => 'rch', 'RcHm_v2.0_Chr5g0061191' => 'rch', 'RcHm_v2.0_Chr7g0203231' => 'rch', 'Rhsim01G0208100' => 'rsi', 'Rhsim01G0208200' => 'rsi', 'Rhsim02G0106500' => 'rsi', 'Rhsim03G0107900' => 'rsi', 'Rhsim06G0163400' => 'rsi', 'Rhsim13G0105200' => 'rsi', 'Sabra04G0006300' => 'sbr', 'Sabra04G0127000' => 'sbr', 'Sabra08G0148700' => 'sbr', 'Sabra09G0117400' => 'sbr', 'SalBow1G3326' => 'sbo', 'SalBow3G3228' => 'sbo', 'SalBow6G1634' => 'sbo', 'SalBow6G3603' => 'sbo', 'SalBow6G5266' => 'sbo', 'SalBow7G2265' => 'sbo', 'SalBow8G0850' => 'sbo', 'SalBow8G2592' => 'sbo', 'Sc05g0009240' => 'sci', 'Sc12g0002300' => 'sci', 'Sc21g0000100' => 'sci', 'Sc21g0004720' => 'sci', 'Sed0002949' => 'sed', 'Sed0004114' => 'sed', 'Sed0004306' => 'sed', 'Sed0006172' => 'sed', 'Sed0008413' => 'sed', 'Sed0013809' => 'sed', 'Sed0019556' => 'sed', 'SEGI_03570' => 'sgi', 'SEGI_07859' => 'sgi', 'SEGI_15042' => 'sgi', 'SEGI_16263' => 'sgi', 'SEGI_16552' => 'sgi', 'SEGI_24331' => 'sgi', 'SEGI_27316' => 'sgi', 'SEGI_29521' => 'sgi', 'SEGI_41342' => 'sgi', 'SGA_v2.0_scaffold27G11617' => 'sas', 'SGA_v2.0_scaffold316G48428' => 'sas', 'SGA_v2.0_scaffold49G18261' => 'sas', 'SGA_v2.0_scaffold7G03831' => 'sas', 'SGA_v2.0_scaffold93G28359' => 'sas', 'SHI02210' => 'shi', 'SHI06028' => 'shi', 'SHI06321' => 'shi', 'SMO111G0012' => 'smo', 'SMO228G0080' => 'smo', 'SMO356G0756' => 'smo', 'Solyc02g080620.3' => 'sly', 'Solyc06g074530.1' => 'sly', 'Solyc11g066890.1' => 'sly', 'Solyc11g072520.3' => 'sly', 'Sopen02g025330' => 'spe', 'Sopen06g031000' => 'spe', 'Sopen09g008240' => 'spe', 'Sopen09g025210' => 'spe', 'Sopen11g026600' => 'spe', 'Sopen11g030170' => 'spe', 'Sp1g10420' => 'spa', 'Sp3g06570' => 'spa', 'Sp4g10660' => 'spa', 'Sp5g16460' => 'spa', 'Sp6g22710' => 'spa', 'TAR365G0112' => 'tar', 'TAR369G0717' => 'tar', 'TAR374G0976' => 'tar', 'TAR623G1128' => 'tar', 'TAR626G1937' => 'tar', 'TAR627G0123' => 'tar', 'TAR628G0305' => 'tar', 'TAR636G1176' => 'tar', 'TAR636G2442' => 'tar', 'THA.LOC104800556' => 'tha', 'THA.LOC104809501' => 'tha', 'THA.LOC104815126' => 'tha', 'THA.LOC104815732' => 'tha', 'THA.LOC104823528' => 'tha', 'Thecc.02G365600' => 'tca', 'Thecc.06G222300' => 'tca', 'Thecc.09G261800' => 'tca', 'Thecc.09G291400' => 'tca', 'Thhalv10003028m.g' => 'esa', 'Thhalv10007886m.g' => 'esa', 'Thhalv10016085m.g' => 'esa', 'Thhalv10016681m.g' => 'esa', 'Thhalv10020951m.g' => 'esa', 'TPR.G15598' => 'tpr', 'TPR.G29305' => 'tpr', 'TPR.G32395' => 'tpr', 'TPR.G36998' => 'tpr', 'TPR.G4227' => 'tpr', 'TWI18G1433' => 'twi', 'TWI31G0755' => 'twi', 'TWI38G0912' => 'twi', 'TWI75G1097' => 'twi', 'TWI75G1619' => 'twi', 'TWI79G1336' => 'twi', 'unitig_0.g943' => 'ugi', 'unitig_0.g944' => 'ugi', 'unitig_22.g6646' => 'ugi', 'unitig_37.g12681' => 'ugi', 'unitig_8.g3290' => 'ugi', 'vmacro03278' => 'vma', 'vmacro12197' => 'vma', 'vmacro14478' => 'vma', 'vmacro15787' => 'vma', 'vmacro15789' => 'vma', 'vmacro15790' => 'vma', 'vmacro15806' => 'vma', 'vmacro22907' => 'vma', 'vmacro22908' => 'vma', 'vmacro22909' => 'vma', 'vmacro23108' => 'vma', 'VMungo0540G0540' => 'vmu', 'VMungo0540G2468' => 'vmu', 'VMungo1080G0390' => 'vmu', 'VMungo1080G1165' => 'vmu', 'VMungo1127G0170' => 'vmu', 'VMungo1127G2099' => 'vmu', 'VMungo1215G3013' => 'vmu', 'Zm00001eb013110' => 'zma', 'Zm00001eb084260' => 'zma', 'Zm00001eb096110' => 'zma', 'Zm00001eb217510' => 'zma', 'Zm00001eb322550' => 'zma', 'Zm00001eb390770' => 'zma', 'Zm00001eb397170' => 'zma', 'Zm00001eb404610' => 'zma', 'Zm00001eb421790' => 'zma' ) $gf_id = 'HOM05D000911' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000911' ) $data_identifier = 'HOM05D000911' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 16, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 5, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 6, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 8, 'nnu' => (int) 16, 'oeu' => (int) 8, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 5, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 16, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421790' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000911', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27780' => 'bna', 'A03p35380' => 'bna', 'A04p21160' => 'bna', 'A05p40570' => 'bna', 'A06p26900' => 'bna', 'A08p33230' => 'bna', 'A09p65960' => 'bna', 'A10p18290' => 'bna', 'Aa31LG1G12990' => 'aar', 'Aa31LG1G2980' => 'aar', 'Aa31LG4G14320' => 'aar', 'Aa31LG7G11800' => 'aar', 'Aa31sc36G50' => 'aar', 'Aa31sc36G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3721' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5459' => 'aag', 'Actinidia03028' => 'ach', 'Actinidia03753' => 'ach', 'Actinidia04187' => 'ach', 'Actinidia05509' => 'ach', 'Actinidia24180' => 'ach', 'Actinidia26906' => 'ach', 'Actinidia37097' => 'ach', 'Actinidia38249' => 'ach', 'Ah.01g003470' => 'amhyb', 'Ah.01g004580' => 'amhyb', 'Ah.01g014850' => 'amhyb', 'Ah.01g016830' => 'amhyb', 'Ah.14g088000' => 'amhyb', 'AL1G22980' => 'aly', 'AL3G18990' => 'aly', 'AL4G22440' => 'aly', 'AL4G33180' => 'aly', 'AL5G22920' => 'aly', 'AL6G33660' => 'aly', 'AL8G20720' => 'aly', 'Aqoxy1G00935' => 'aox', 'Aqoxy1G02094' => 'aox', 'Aqoxy2G01239' => 'aox', 'Aqoxy4G01870' => 'aox', 'Aqoxy7G00450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.36ZVTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71EM27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5D6C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH3WRE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3NCM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RIM768' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YB5YRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z36GDV' => 'arhy', 'AT1G08250' => 'ath', 'AT1G11790' => 'ath', 'AT2G27820' => 'ath', 'AT3G07630' => 'ath', 'AT3G44720' => 'ath', 'AT5G22630' => 'ath', 'ATR0693G304' => 'atr', 'ATR0794G109' => 'atr', 'ATR0820G120' => 'atr', 'ATR1159G064' => 'atr', 'Atru.chr10.2239' => 'acertr', 'Atru.chr3.3371' => 'acertr', 'Atru.chr6.3202' => 'acertr', 'AUR62006499' => 'cqu', 'AUR62012718' => 'cqu', 'AUR62021938' => 'cqu', 'AUR62023932' => 'cqu', 'AUR62025034' => 'cqu', 'AUR62025035' => 'cqu', 'AUR62038307' => 'cqu', 'AUR62043466' => 'cqu', 'BcaB02g10748' => 'bca', 'BcaB03g13231' => 'bca', 'BcaB03g14689' => 'bca', 'BcaB05g22716' => 'bca', 'BcaB06g28172' => 'bca', 'BcaB08g36413' => 'bca', 'BcaC01g02186' => 'bca', 'BcaC01g04272' => 'bca', 'BcaC02g08080' => 'bca', 'BcaC02g08227' => 'bca', 'BcaC03g13901' => 'bca', 'BcaC04g19593' => 'bca', 'BcaC04g20874' => 'bca', 'BcaC05g29557' => 'bca', 'BcaC06g35505' => 'bca', 'BcaC07g41954' => 'bca', 'BcaC07g41955' => 'bca', 'BcaC07g41956' => 'bca', 'BcaC07g42519' => 'bca', 'BcaC07g42520' => 'bca', 'BcaC07g42523' => 'bca', 'BcaC07g42524' => 'bca', 'BcaC07g42525' => 'bca', 'BcaC08g47480' => 'bca', 'BcaC08g47481' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00530' => 'bna', 'BolC2t07178H' => 'bol', 'BolC3t16567H' => 'bol', 'BolC4t27234H' => 'bol', 'BolC5t29728H' => 'bol', 'BolC5t34622H' => 'bol', 'BolC6t40321H' => 'bol', 'BolC7t42028H' => 'bol', 'BolC8t49125H' => 'bol', 'BolC8t52538H' => 'bol', 'BolC8t52539H' => 'bol', 'BolC9t56681H' => 'bol', 'BolC9t58266H' => 'bol', 'BolSC21t60294H' => 'bol', 'BraA02t05670Z' => 'bra', 'BraA03t12716Z' => 'bra', 'BraA04t17685Z' => 'bra', 'BraA05t22788Z' => 'bra', 'BraA06t24032Z' => 'bra', 'BraA06t25625Z' => 'bra', 'BraA07t27930Z' => 'bra', 'BraA08t35242Z' => 'bra', 'BraA09t38609Z' => 'bra', 'BraA10t43905Z' => 'bra', 'C02p11060' => 'bna', 'C03p42990' => 'bna', 'C03p67310' => 'bna', 'C04p56990' => 'bna', 'C04p58660' => 'bna', 'C05p09890' => 'bna', 'C05p59680' => 'bna', 'C06p19830' => 'bna', 'C06p53040' => 'bna', 'C07p15230' => 'bna', 'C08p50070' => 'bna', 'C08p50090' => 'bna', 'C09p38330' => 'bna', 'C09p53940' => 'bna', 'CAN.G1014.1' => 'can', 'CAN.G644.30' => 'can', 'CAN.G84.47' => 'can', 'CAN.G919.8' => 'can', 'CANSAT54G0113' => 'cansat', 'CANSAT54G1286' => 'cansat', 'CANSAT64G1020' => 'cansat', 'CARHR008080' => 'chi', 'CARHR008090' => 'chi', 'CARHR012130' => 'chi', 'CARHR038390' => 'chi', 'CARHR082330' => 'chi', 'CARHR120520' => 'chi', 'CARHR151470' => 'chi', 'CARHR190950' => 'chi', 'Carub.0001s0760' => 'cru', 'Carub.0001s1146' => 'cru', 'Carub.0003s0721' => 'cru', 'Carub.0004s0858' => 'cru', 'Carub.0005s1040' => 'cru', 'Carub.0006s2035' => 'cru', 'Carub.0015s0005' => 'cru', 'Ca_01607_v3' => 'car', 'Ca_01677_v3' => 'car', 'Ca_06087_v3' => 'car', 'Ca_19238_v3' => 'car', 'Ca_19373_v3' => 'car', 'Ca_21079_v3' => 'car', 'CBR_g54016' => 'cbr', 'CBR_g54018' => 'cbr', 'CBR_g54020' => 'cbr', 'Cc01_g09780' => 'ccan', 'Cc01_g11680' => 'ccan', 'Cc02_g15610' => 'ccan', 'Cc05_g04350' => 'ccan', 'Cc09_g01580' => 'ccan', 'CDE01G0795' => 'cde', 'CDE02G2024' => 'cde', 'CDE02G2260' => 'cde', 'CDE02G4561' => 'cde', 'CDE05G2733' => 'cde', 'CDE05G3422' => 'cde', 'CDE06G2003' => 'cde', 'CDE08G0576' => 'cde', 'CDE09G0048' => 'cde', 'CDE11G0805' => 'cde', 'Cfa003644' => 'cfa', 'Cfa006290' => 'cfa', 'Cfa010080' => 'cfa', 'Cfa011376' => 'cfa', 'Cfa011576' => 'cfa', 'Cfa011577' => 'cfa', 'Cfa014389' => 'cfa', 'Ciclev10006044m.g' => 'ccl', 'Ciclev10006954m.g' => 'ccl', 'Ciclev10015131m.g' => 'ccl', 'Ciclev10015580m.g' => 'ccl', 'Ciclev10028359m.g' => 'ccl', 'Ciclev10028573m.g' => 'ccl', 'CiPaw.03G159300' => 'cil', 'CiPaw.04G115100' => 'cil', 'CiPaw.09G092800' => 'cil', 'CiPaw.10G071800' => 'cil', 'CiPaw.13G105800' => 'cil', 'CiPaw.13G141000' => 'cil', 'CiPaw.14G103400' => 'cil', 'ClCG01G012700' => 'cla', 'ClCG01G012720' => 'cla', 'ClCG01G021920' => 'cla', 'ClCG02G008870' => 'cla', 'ClCG02G020840' => 'cla', 'ClCG02G021930' => 'cla', 'COL.COLO4_19302' => 'col', 'COL.COLO4_25262' => 'col', 'COL.COLO4_31788' => 'col', 'Cpa.g.c34684' => 'cpa', 'Cpa.g.c36520.1' => 'cpa', 'Cpa.g.c45626' => 'cpa', 'Cpa.g.sc121.17' => 'cpa', 'Cpa.g.sc13.22' => 'cpa', 'Cpa.g.sc87.88' => 'cpa', 'Cre06.g261800' => 'cre', 'CsaV3_1G014500' => 'csa', 'CsaV3_1G014510' => 'csa', 'CsaV3_2G034880' => 'csa', 'CsaV3_6G014760' => 'csa', 'CsaV3_6G021500' => 'csa', 'CsaV3_6G048980' => 'csa', 'CSS0002511' => 'camsi', 'CSS0007556' => 'camsi', 'CSS0008532' => 'camsi', 'CSS0009709' => 'camsi', 'CSS0010486' => 'camsi', 'CSS0016768' => 'camsi', 'CSS0023512' => 'camsi', 'CSS0025341' => 'camsi', 'CSS0027999' => 'camsi', 'CSS0028944' => 'camsi', 'CSS0032292' => 'camsi', 'CSS0032464' => 'camsi', 'CSS0037153' => 'camsi', 'CSS0039256' => 'camsi', 'CSS0048392' => 'camsi', 'CSS0050458' => 'camsi', 'DCAR_004224' => 'dca', 'DCAR_006147' => 'dca', 'DCAR_006465' => 'dca', 'DCAR_008159' => 'dca', 'DCAR_012164' => 'dca', 'DCAR_019764' => 'dca', 'Dinv05418' => 'din', 'Dinv10839' => 'din', 'Dinv12521' => 'din', 'Dinv13900' => 'din', 'Dinv29426' => 'din', 'Duzib150G0263' => 'dzi', 'Duzib168G1178' => 'dzi', 'Duzib168G1924' => 'dzi', 'Duzib170G0299' => 'dzi', 'Duzib170G0813' => 'dzi', 'Duzib235G1128' => 'dzi', 'Duzib248G1060' => 'dzi', 'ECA232G1910' => 'eca', 'ECA233G4621' => 'eca', 'ECA238G1216' => 'eca', 'ECA238G1784' => 'eca', 'ECA248G1242' => 'eca', 'EL10Ac8g20071' => 'bvu', 'EL10Ac9g21086' => 'bvu', 'EL10Ac9g22407' => 'bvu', 'EL10Ac9g22412' => 'bvu', 'Eucgr.A01119' => 'egr', 'Eucgr.E04043' => 'egr', 'Eucgr.J00428' => 'egr', 'Eucgr.J00958' => 'egr', 'FAN11G3091' => 'fan', 'FAN11G3651' => 'fan', 'FAN16G2566' => 'fan', 'FAN21G3155' => 'fan', 'FAN21G3400' => 'fan', 'FAN21G3543' => 'fan', 'FAN25G0234' => 'fan', 'FAN25G1422' => 'fan', 'FAN25G3392' => 'fan', 'FvH4_3g01940' => 'fve', 'FvH4_3g29870' => 'fve', 'FvH4_3g33680' => 'fve', 'Glyma.09G004200' => 'gma', 'Glyma.11G151288' => 'gma', 'Glyma.11G189100' => 'gma', 'Glyma.12G072500' => 'gma', 'Glyma.12G085500' => 'gma', 'Glyma.12G181800' => 'gma', 'Glyma.12G193000' => 'gma', 'Glyma.13G309300' => 'gma', 'Glyma.13G319000' => 'gma', 'Glyma.17G012600' => 'gma', 'Gohir.A06G148600' => 'ghi', 'Gohir.A07G115800' => 'ghi', 'Gohir.A08G003600' => 'ghi', 'Gohir.A09G093300' => 'ghi', 'Gohir.A09G105400' => 'ghi', 'Gohir.A09G105500' => 'ghi', 'Gohir.D06G154600' => 'ghi', 'Gohir.D07G120200' => 'ghi', 'Gohir.D08G013900' => 'ghi', 'Gohir.D09G093100' => 'ghi', 'Gohir.D09G102200' => 'ghi', 'Gohir.D09G102300' => 'ghi', 'Gorai.001G129400' => 'gra', 'Gorai.004G008200' => 'gra', 'Gorai.006G109800' => 'gra', 'Gorai.006G119500' => 'gra', 'Gorai.006G121300' => 'gra', 'Gorai.010G180700' => 'gra', 'GSVIVG01012716001' => 'vvi', 'GSVIVG01025118001' => 'vvi', 'GSVIVG01030439001' => 'vvi', 'GSVIVG01031397001' => 'vvi', 'HanXRQChr01g0004201' => 'han', 'HanXRQChr02g0054941' => 'han', 'HanXRQChr05g0141811' => 'han', 'HanXRQChr07g0197751' => 'han', 'HanXRQChr11g0346691' => 'han', 'HanXRQChr13g0396971' => 'han', 'HanXRQChr14g0432951' => 'han', 'HanXRQChr14g0452001' => 'han', 'HanXRQChr15g0496681' => 'han', 'HanXRQChr17g0557491' => 'han', 'HanXRQChr17g0557501' => 'han', 'Haze_06809' => 'cav', 'Haze_12852' => 'cav', 'Haze_15850' => 'cav', 'Haze_23446' => 'cav', 'Haze_23942' => 'cav', 'Haze_23943' => 'cav', 'Hma1.2p1_0091F.1_g046450' => 'hma', 'Hma1.2p1_0128F.1_g059910' => 'hma', 'Hma1.2p1_0249F.1_g102260' => 'hma', 'Hma1.2p1_0453F.1_g156190' => 'hma', 'Hma1.2p1_0695F.1_g204380' => 'hma', 'Hma1.2p1_0749F.1_g212650' => 'hma', 'Hma1.2p1_2156F.1_g315420' => 'hma', 'Hma1.2p1_2686F.1_g326940' => 'hma', 'HPP92_006428' => 'vpl', 'HPP92_012069' => 'vpl', 'HPP92_014129' => 'vpl', 'HPP92_014133' => 'vpl', 'HPP92_017315' => 'vpl', 'HPP92_026445' => 'vpl', 'HPP92_026446' => 'vpl', 'Hund00774' => 'sun', 'Hund07682' => 'sun', 'Hund21413' => 'sun', 'Hund23462' => 'sun', 'Hund23463' => 'sun', 'Lalb_Chr03g0027911' => 'lal', 'Lalb_Chr13g0304271' => 'lal', 'Lalb_Chr19g0137471' => 'lal', 'Lalb_Chr22g0350651' => 'lal', 'Lalb_Chr24g0395151' => 'lal', 'Lj1A1231T40' => 'lonja', 'Lj1A221T48' => 'lonja', 'Lj1C924T12' => 'lonja', 'Lj2C993G6' => 'lonja', 'Lj3g0005790' => 'lja', 'Lj3g0015432' => 'lja', 'Lj3g0017722' => 'lja', 'Lj3g0018497' => 'lja', 'Lj4g0025071' => 'lja', 'Lsat_1_v5_gn_1_129680' => 'lsa', 'Lsat_1_v5_gn_2_25321' => 'lsa', 'Lsat_1_v5_gn_2_95461' => 'lsa', 'Lsat_1_v5_gn_4_159620' => 'lsa', 'Lsat_1_v5_gn_6_41301' => 'lsa', 'Lsat_1_v5_gn_6_74660' => 'lsa', 'Lsat_1_v5_gn_7_11520' => 'lsa', 'Lsat_1_v5_gn_9_67680' => 'lsa', 'Manes.04G008300' => 'mes', 'Manes.04G008400' => 'mes', 'Manes.04G026500' => 'mes', 'Manes.10G135300' => 'mes', 'Manes.11G157300' => 'mes', 'Manes.12G074000' => 'mes', 'Manes.16G006200' => 'mes', 'Manes.17G026400' => 'mes', 'Mapoly0024s0086' => 'mpo', 'Mapoly0024s0087' => 'mpo', 'Mapoly0071s0057' => 'mpo', 'Mapoly0204s0012' => 'mpo', 'MBI04_g37681_MAGBIO' => 'mbi', 'MBI05_g17779_MAGBIO' => 'mbi', 'MBI12_g31184_MAGBIO' => 'mbi', 'MBI17_g11083_MAGBIO' => 'mbi', 'MBI18_g03883_MAGBIO' => 'mbi', 'MBI18_g28940_MAGBIO' => 'mbi', 'MCO01G690' => 'mco', 'MD03G1109900' => 'mdo', 'MD03G1134800' => 'mdo', 'MD05G1348000' => 'mdo', 'MD10G1322400' => 'mdo', 'MD11G1123300' => 'mdo', 'MD11G1157600' => 'mdo', 'Medtr2g084875' => 'mtr', 'Medtr2g088130' => 'mtr', 'Medtr4g055310' => 'mtr', 'Medtr4g061070' => 'mtr', 'Medtr4g132250' => 'mtr', 'MELO3C004795.2' => 'cme', 'MELO3C004797.2' => 'cme', 'MELO3C007396.2' => 'cme', 'MELO3C019277.2' => 'cme', 'MELO3C021449.2' => 'cme', 'MELO3C025736.2' => 'cme', 'Migut.D02175' => 'egut', 'Migut.H01573' => 'egut', 'Migut.M01327' => 'egut', 'Migut.N02513' => 'egut', 'MSTRG.14638' => 'ama', 'MSTRG.18632' => 'ama', 'MSTRG.7203' => 'ama', 'Nitab4.5_0000533g0140' => 'nta', 'Nitab4.5_0000888g0150' => 'nta', 'Nitab4.5_0001453g0040' => 'nta', 'Nitab4.5_0002827g0090' => 'nta', 'Nitab4.5_0003082g0040' => 'nta', 'Nitab4.5_0007799g0040' => 'nta', 'Nitab4.5_0008983g0010' => 'nta', 'Nitab4.5_0009017g0020' => 'nta', 'Nn1g02132' => 'nnu', 'Nn1g03492' => 'nnu', 'Nn1g03493' => 'nnu', 'Nn1g03494' => 'nnu', 'Nn1g07164' => 'nnu', 'Nn1g07291' => 'nnu', 'Nn2g10655' => 'nnu', 'Nn2g11652' => 'nnu', 'Nn2g14008' => 'nnu', 'Nn3g17476' => 'nnu', 'Nn3g17477' => 'nnu', 'Nn4g22370' => 'nnu', 'Nn4g25255' => 'nnu', 'Nn5g27755' => 'nnu', 'Nn6g34260' => 'nnu', 'Nn6g35041' => 'nnu', 'Oeu005924.1' => 'oeu', 'Oeu008383.1' => 'oeu', 'Oeu014928.1' => 'oeu', 'Oeu019889.1' => 'oeu', 'Oeu022271.1' => 'oeu', 'Oeu025271.1' => 'oeu', 'Oeu036302.1' => 'oeu', 'Oeu044100.1' => 'oeu', 'Os01g0528300' => 'osa', 'Os03g0286200' => 'osa', 'Os04g0406600' => 'osa', 'Os07g0512000' => 'osa', 'Os07g0694600' => 'osa', 'Os08g0411000' => 'osa', 'Os09g0565700' => 'osa', 'Os09g0566050' => 'osa', 'Os10g0523700' => 'osa', 'Peaxi162Scf00002g00514' => 'pax', 'Peaxi162Scf00047g01817' => 'pax', 'Peaxi162Scf00114g00001' => 'pax', 'Peaxi162Scf00147g00613' => 'pax', 'Peaxi162Scf00389g00425' => 'pax', 'PGR042G1139' => 'pgr', 'PGR042G3273' => 'pgr', 'PGR102G2180' => 'pgr', 'PGR119G0234' => 'pgr', 'PGR119G0668' => 'pgr', 'PGSC0003DMG400007122' => 'stu', 'PGSC0003DMG400016478' => 'stu', 'PGSC0003DMG400025374' => 'stu', 'PGSC0003DMG400026536' => 'stu', 'Phvul.003G079600' => 'pvu', 'Phvul.005G115600' => 'pvu', 'Phvul.005G127100' => 'pvu', 'Phvul.006G149500' => 'pvu', 'Phvul.006G149600' => 'pvu', 'Phvul.011G071800' => 'pvu', 'Phvul.011G090400' => 'pvu', 'Potri.004G013400' => 'ptr', 'Potri.004G188100' => 'ptr', 'Potri.008G195500' => 'ptr', 'Potri.009G148800' => 'ptr', 'Potri.011G004700' => 'ptr', 'Pp3c17_22810' => 'ppa', 'Pp3c18_4480' => 'ppa', 'Pp3c19_13030' => 'ppa', 'Pp3c1_33620' => 'ppa', 'Pp3c2_9380' => 'ppa', 'PRCOL_00001023' => 'pco', 'Prupe.3G216300' => 'ppe', 'Prupe.4G019500' => 'ppe', 'Prupe.6G092500' => 'ppe', 'Prupe.6G119200' => 'ppe', 'Psat0s1945g0080' => 'psa', 'Psat0s4167g0040' => 'psa', 'Psat1g185800' => 'psa', 'Psat4g006440' => 'psa', 'Psat4g006480' => 'psa', 'Psat4g168120' => 'psa', 'Psat5g255680' => 'psa', 'Psat5g261760' => 'psa', 'Psat7g222120' => 'psa', 'PSO063G7252' => 'pso', 'PSO170G4778' => 'pso', 'PSO210G2249' => 'pso', 'PSO339G2411' => 'pso', 'PSO339G2457' => 'pso', 'PSO339G2854' => 'pso', 'PSO339G4288' => 'pso', 'PSO339G4615' => 'pso', 'PSO384G2796' => 'pso', 'PSO384G2940' => 'pso', 'PSO384G4227' => 'pso', 'PSO478G1425' => 'pso', 'PSO541G3863' => 'pso', 'PSO675G0507' => 'pso', 'PSO782G0338' => 'pso', 'PSO832G0644' => 'pso', 'QL01p013664' => 'qlo', 'QL01p036598' => 'qlo', 'QL05p072984' => 'qlo', 'QL08p005768' => 'qlo', 'QL08p032743' => 'qlo', 'QL93p0073_0439' => 'qlo', 'QL93p0073_0444' => 'qlo', 'RcHm_v2.0_Chr5g0002851' => 'rch', 'RcHm_v2.0_Chr5g0055201' => 'rch', 'RcHm_v2.0_Chr5g0061191' => 'rch', 'RcHm_v2.0_Chr7g0203231' => 'rch', 'Rhsim01G0208100' => 'rsi', 'Rhsim01G0208200' => 'rsi', 'Rhsim02G0106500' => 'rsi', 'Rhsim03G0107900' => 'rsi', 'Rhsim06G0163400' => 'rsi', 'Rhsim13G0105200' => 'rsi', 'Sabra04G0006300' => 'sbr', 'Sabra04G0127000' => 'sbr', 'Sabra08G0148700' => 'sbr', 'Sabra09G0117400' => 'sbr', 'SalBow1G3326' => 'sbo', 'SalBow3G3228' => 'sbo', 'SalBow6G1634' => 'sbo', 'SalBow6G3603' => 'sbo', 'SalBow6G5266' => 'sbo', 'SalBow7G2265' => 'sbo', 'SalBow8G0850' => 'sbo', 'SalBow8G2592' => 'sbo', 'Sc05g0009240' => 'sci', 'Sc12g0002300' => 'sci', 'Sc21g0000100' => 'sci', 'Sc21g0004720' => 'sci', 'Sed0002949' => 'sed', 'Sed0004114' => 'sed', 'Sed0004306' => 'sed', 'Sed0006172' => 'sed', 'Sed0008413' => 'sed', 'Sed0013809' => 'sed', 'Sed0019556' => 'sed', 'SEGI_03570' => 'sgi', 'SEGI_07859' => 'sgi', 'SEGI_15042' => 'sgi', 'SEGI_16263' => 'sgi', 'SEGI_16552' => 'sgi', 'SEGI_24331' => 'sgi', 'SEGI_27316' => 'sgi', 'SEGI_29521' => 'sgi', 'SEGI_41342' => 'sgi', 'SGA_v2.0_scaffold27G11617' => 'sas', 'SGA_v2.0_scaffold316G48428' => 'sas', 'SGA_v2.0_scaffold49G18261' => 'sas', 'SGA_v2.0_scaffold7G03831' => 'sas', 'SGA_v2.0_scaffold93G28359' => 'sas', 'SHI02210' => 'shi', 'SHI06028' => 'shi', 'SHI06321' => 'shi', 'SMO111G0012' => 'smo', 'SMO228G0080' => 'smo', 'SMO356G0756' => 'smo', 'Solyc02g080620.3' => 'sly', 'Solyc06g074530.1' => 'sly', 'Solyc11g066890.1' => 'sly', 'Solyc11g072520.3' => 'sly', 'Sopen02g025330' => 'spe', 'Sopen06g031000' => 'spe', 'Sopen09g008240' => 'spe', 'Sopen09g025210' => 'spe', 'Sopen11g026600' => 'spe', 'Sopen11g030170' => 'spe', 'Sp1g10420' => 'spa', 'Sp3g06570' => 'spa', 'Sp4g10660' => 'spa', 'Sp5g16460' => 'spa', 'Sp6g22710' => 'spa', 'TAR365G0112' => 'tar', 'TAR369G0717' => 'tar', 'TAR374G0976' => 'tar', 'TAR623G1128' => 'tar', 'TAR626G1937' => 'tar', 'TAR627G0123' => 'tar', 'TAR628G0305' => 'tar', 'TAR636G1176' => 'tar', 'TAR636G2442' => 'tar', 'THA.LOC104800556' => 'tha', 'THA.LOC104809501' => 'tha', 'THA.LOC104815126' => 'tha', 'THA.LOC104815732' => 'tha', 'THA.LOC104823528' => 'tha', 'Thecc.02G365600' => 'tca', 'Thecc.06G222300' => 'tca', 'Thecc.09G261800' => 'tca', 'Thecc.09G291400' => 'tca', 'Thhalv10003028m.g' => 'esa', 'Thhalv10007886m.g' => 'esa', 'Thhalv10016085m.g' => 'esa', 'Thhalv10016681m.g' => 'esa', 'Thhalv10020951m.g' => 'esa', 'TPR.G15598' => 'tpr', 'TPR.G29305' => 'tpr', 'TPR.G32395' => 'tpr', 'TPR.G36998' => 'tpr', 'TPR.G4227' => 'tpr', 'TWI18G1433' => 'twi', 'TWI31G0755' => 'twi', 'TWI38G0912' => 'twi', 'TWI75G1097' => 'twi', 'TWI75G1619' => 'twi', 'TWI79G1336' => 'twi', 'unitig_0.g943' => 'ugi', 'unitig_0.g944' => 'ugi', 'unitig_22.g6646' => 'ugi', 'unitig_37.g12681' => 'ugi', 'unitig_8.g3290' => 'ugi', 'vmacro03278' => 'vma', 'vmacro12197' => 'vma', 'vmacro14478' => 'vma', 'vmacro15787' => 'vma', 'vmacro15789' => 'vma', 'vmacro15790' => 'vma', 'vmacro15806' => 'vma', 'vmacro22907' => 'vma', 'vmacro22908' => 'vma', 'vmacro22909' => 'vma', 'vmacro23108' => 'vma', 'VMungo0540G0540' => 'vmu', 'VMungo0540G2468' => 'vmu', 'VMungo1080G0390' => 'vmu', 'VMungo1080G1165' => 'vmu', 'VMungo1127G0170' => 'vmu', 'VMungo1127G2099' => 'vmu', 'VMungo1215G3013' => 'vmu', 'Zm00001eb013110' => 'zma', 'Zm00001eb084260' => 'zma', 'Zm00001eb096110' => 'zma', 'Zm00001eb217510' => 'zma', 'Zm00001eb322550' => 'zma', 'Zm00001eb390770' => 'zma', 'Zm00001eb397170' => 'zma', 'Zm00001eb404610' => 'zma', 'Zm00001eb421790' => 'zma' ), 'gf_id' => 'HOM05D000911', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000911' ), 'data_identifier' => 'HOM05D000911', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000911', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27780' => 'bna', 'A03p35380' => 'bna', 'A04p21160' => 'bna', 'A05p40570' => 'bna', 'A06p26900' => 'bna', 'A08p33230' => 'bna', 'A09p65960' => 'bna', 'A10p18290' => 'bna', 'Aa31LG1G12990' => 'aar', 'Aa31LG1G2980' => 'aar', 'Aa31LG4G14320' => 'aar', 'Aa31LG7G11800' => 'aar', 'Aa31sc36G50' => 'aar', 'Aa31sc36G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3721' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5459' => 'aag', 'Actinidia03028' => 'ach', 'Actinidia03753' => 'ach', 'Actinidia04187' => 'ach', 'Actinidia05509' => 'ach', 'Actinidia24180' => 'ach', 'Actinidia26906' => 'ach', 'Actinidia37097' => 'ach', 'Actinidia38249' => 'ach', 'Ah.01g003470' => 'amhyb', 'Ah.01g004580' => 'amhyb', 'Ah.01g014850' => 'amhyb', 'Ah.01g016830' => 'amhyb', 'Ah.14g088000' => 'amhyb', 'AL1G22980' => 'aly', 'AL3G18990' => 'aly', 'AL4G22440' => 'aly', 'AL4G33180' => 'aly', 'AL5G22920' => 'aly', 'AL6G33660' => 'aly', 'AL8G20720' => 'aly', 'Aqoxy1G00935' => 'aox', 'Aqoxy1G02094' => 'aox', 'Aqoxy2G01239' => 'aox', 'Aqoxy4G01870' => 'aox', 'Aqoxy7G00450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.36ZVTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71EM27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5D6C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH3WRE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3NCM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RIM768' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YB5YRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z36GDV' => 'arhy', 'AT1G08250' => 'ath', 'AT1G11790' => 'ath', 'AT2G27820' => 'ath', 'AT3G07630' => 'ath', 'AT3G44720' => 'ath', 'AT5G22630' => 'ath', 'ATR0693G304' => 'atr', 'ATR0794G109' => 'atr', 'ATR0820G120' => 'atr', 'ATR1159G064' => 'atr', 'Atru.chr10.2239' => 'acertr', 'Atru.chr3.3371' => 'acertr', 'Atru.chr6.3202' => 'acertr', 'AUR62006499' => 'cqu', 'AUR62012718' => 'cqu', 'AUR62021938' => 'cqu', 'AUR62023932' => 'cqu', 'AUR62025034' => 'cqu', 'AUR62025035' => 'cqu', 'AUR62038307' => 'cqu', 'AUR62043466' => 'cqu', 'BcaB02g10748' => 'bca', 'BcaB03g13231' => 'bca', 'BcaB03g14689' => 'bca', 'BcaB05g22716' => 'bca', 'BcaB06g28172' => 'bca', 'BcaB08g36413' => 'bca', 'BcaC01g02186' => 'bca', 'BcaC01g04272' => 'bca', 'BcaC02g08080' => 'bca', 'BcaC02g08227' => 'bca', 'BcaC03g13901' => 'bca', 'BcaC04g19593' => 'bca', 'BcaC04g20874' => 'bca', 'BcaC05g29557' => 'bca', 'BcaC06g35505' => 'bca', 'BcaC07g41954' => 'bca', 'BcaC07g41955' => 'bca', 'BcaC07g41956' => 'bca', 'BcaC07g42519' => 'bca', 'BcaC07g42520' => 'bca', 'BcaC07g42523' => 'bca', 'BcaC07g42524' => 'bca', 'BcaC07g42525' => 'bca', 'BcaC08g47480' => 'bca', 'BcaC08g47481' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00530' => 'bna', 'BolC2t07178H' => 'bol', 'BolC3t16567H' => 'bol', 'BolC4t27234H' => 'bol', 'BolC5t29728H' => 'bol', 'BolC5t34622H' => 'bol', 'BolC6t40321H' => 'bol', 'BolC7t42028H' => 'bol', 'BolC8t49125H' => 'bol', 'BolC8t52538H' => 'bol', 'BolC8t52539H' => 'bol', 'BolC9t56681H' => 'bol', 'BolC9t58266H' => 'bol', 'BolSC21t60294H' => 'bol', 'BraA02t05670Z' => 'bra', 'BraA03t12716Z' => 'bra', 'BraA04t17685Z' => 'bra', 'BraA05t22788Z' => 'bra', 'BraA06t24032Z' => 'bra', 'BraA06t25625Z' => 'bra', 'BraA07t27930Z' => 'bra', 'BraA08t35242Z' => 'bra', 'BraA09t38609Z' => 'bra', 'BraA10t43905Z' => 'bra', 'C02p11060' => 'bna', 'C03p42990' => 'bna', 'C03p67310' => 'bna', 'C04p56990' => 'bna', 'C04p58660' => 'bna', 'C05p09890' => 'bna', 'C05p59680' => 'bna', 'C06p19830' => 'bna', 'C06p53040' => 'bna', 'C07p15230' => 'bna', 'C08p50070' => 'bna', 'C08p50090' => 'bna', 'C09p38330' => 'bna', 'C09p53940' => 'bna', 'CAN.G1014.1' => 'can', 'CAN.G644.30' => 'can', 'CAN.G84.47' => 'can', 'CAN.G919.8' => 'can', 'CANSAT54G0113' => 'cansat', 'CANSAT54G1286' => 'cansat', 'CANSAT64G1020' => 'cansat', 'CARHR008080' => 'chi', 'CARHR008090' => 'chi', 'CARHR012130' => 'chi', 'CARHR038390' => 'chi', 'CARHR082330' => 'chi', 'CARHR120520' => 'chi', 'CARHR151470' => 'chi', 'CARHR190950' => 'chi', 'Carub.0001s0760' => 'cru', 'Carub.0001s1146' => 'cru', 'Carub.0003s0721' => 'cru', 'Carub.0004s0858' => 'cru', 'Carub.0005s1040' => 'cru', 'Carub.0006s2035' => 'cru', 'Carub.0015s0005' => 'cru', 'Ca_01607_v3' => 'car', 'Ca_01677_v3' => 'car', 'Ca_06087_v3' => 'car', 'Ca_19238_v3' => 'car', 'Ca_19373_v3' => 'car', 'Ca_21079_v3' => 'car', 'CBR_g54016' => 'cbr', 'CBR_g54018' => 'cbr', 'CBR_g54020' => 'cbr', 'Cc01_g09780' => 'ccan', 'Cc01_g11680' => 'ccan', 'Cc02_g15610' => 'ccan', 'Cc05_g04350' => 'ccan', 'Cc09_g01580' => 'ccan', 'CDE01G0795' => 'cde', 'CDE02G2024' => 'cde', 'CDE02G2260' => 'cde', 'CDE02G4561' => 'cde', 'CDE05G2733' => 'cde', 'CDE05G3422' => 'cde', 'CDE06G2003' => 'cde', 'CDE08G0576' => 'cde', 'CDE09G0048' => 'cde', 'CDE11G0805' => 'cde', 'Cfa003644' => 'cfa', 'Cfa006290' => 'cfa', 'Cfa010080' => 'cfa', 'Cfa011376' => 'cfa', 'Cfa011576' => 'cfa', 'Cfa011577' => 'cfa', 'Cfa014389' => 'cfa', 'Ciclev10006044m.g' => 'ccl', 'Ciclev10006954m.g' => 'ccl', 'Ciclev10015131m.g' => 'ccl', 'Ciclev10015580m.g' => 'ccl', 'Ciclev10028359m.g' => 'ccl', 'Ciclev10028573m.g' => 'ccl', 'CiPaw.03G159300' => 'cil', 'CiPaw.04G115100' => 'cil', 'CiPaw.09G092800' => 'cil', 'CiPaw.10G071800' => 'cil', 'CiPaw.13G105800' => 'cil', 'CiPaw.13G141000' => 'cil', 'CiPaw.14G103400' => 'cil', 'ClCG01G012700' => 'cla', 'ClCG01G012720' => 'cla', 'ClCG01G021920' => 'cla', 'ClCG02G008870' => 'cla', 'ClCG02G020840' => 'cla', 'ClCG02G021930' => 'cla', 'COL.COLO4_19302' => 'col', 'COL.COLO4_25262' => 'col', 'COL.COLO4_31788' => 'col', 'Cpa.g.c34684' => 'cpa', 'Cpa.g.c36520.1' => 'cpa', 'Cpa.g.c45626' => 'cpa', 'Cpa.g.sc121.17' => 'cpa', 'Cpa.g.sc13.22' => 'cpa', 'Cpa.g.sc87.88' => 'cpa', 'Cre06.g261800' => 'cre', 'CsaV3_1G014500' => 'csa', 'CsaV3_1G014510' => 'csa', 'CsaV3_2G034880' => 'csa', 'CsaV3_6G014760' => 'csa', 'CsaV3_6G021500' => 'csa', 'CsaV3_6G048980' => 'csa', 'CSS0002511' => 'camsi', 'CSS0007556' => 'camsi', 'CSS0008532' => 'camsi', 'CSS0009709' => 'camsi', 'CSS0010486' => 'camsi', 'CSS0016768' => 'camsi', 'CSS0023512' => 'camsi', 'CSS0025341' => 'camsi', 'CSS0027999' => 'camsi', 'CSS0028944' => 'camsi', 'CSS0032292' => 'camsi', 'CSS0032464' => 'camsi', 'CSS0037153' => 'camsi', 'CSS0039256' => 'camsi', 'CSS0048392' => 'camsi', 'CSS0050458' => 'camsi', 'DCAR_004224' => 'dca', 'DCAR_006147' => 'dca', 'DCAR_006465' => 'dca', 'DCAR_008159' => 'dca', 'DCAR_012164' => 'dca', 'DCAR_019764' => 'dca', 'Dinv05418' => 'din', 'Dinv10839' => 'din', 'Dinv12521' => 'din', 'Dinv13900' => 'din', 'Dinv29426' => 'din', 'Duzib150G0263' => 'dzi', 'Duzib168G1178' => 'dzi', 'Duzib168G1924' => 'dzi', 'Duzib170G0299' => 'dzi', 'Duzib170G0813' => 'dzi', 'Duzib235G1128' => 'dzi', 'Duzib248G1060' => 'dzi', 'ECA232G1910' => 'eca', 'ECA233G4621' => 'eca', 'ECA238G1216' => 'eca', 'ECA238G1784' => 'eca', 'ECA248G1242' => 'eca', 'EL10Ac8g20071' => 'bvu', 'EL10Ac9g21086' => 'bvu', 'EL10Ac9g22407' => 'bvu', 'EL10Ac9g22412' => 'bvu', 'Eucgr.A01119' => 'egr', 'Eucgr.E04043' => 'egr', 'Eucgr.J00428' => 'egr', 'Eucgr.J00958' => 'egr', 'FAN11G3091' => 'fan', 'FAN11G3651' => 'fan', 'FAN16G2566' => 'fan', 'FAN21G3155' => 'fan', 'FAN21G3400' => 'fan', 'FAN21G3543' => 'fan', 'FAN25G0234' => 'fan', 'FAN25G1422' => 'fan', 'FAN25G3392' => 'fan', 'FvH4_3g01940' => 'fve', 'FvH4_3g29870' => 'fve', 'FvH4_3g33680' => 'fve', 'Glyma.09G004200' => 'gma', 'Glyma.11G151288' => 'gma', 'Glyma.11G189100' => 'gma', 'Glyma.12G072500' => 'gma', 'Glyma.12G085500' => 'gma', 'Glyma.12G181800' => 'gma', 'Glyma.12G193000' => 'gma', 'Glyma.13G309300' => 'gma', 'Glyma.13G319000' => 'gma', 'Glyma.17G012600' => 'gma', 'Gohir.A06G148600' => 'ghi', 'Gohir.A07G115800' => 'ghi', 'Gohir.A08G003600' => 'ghi', 'Gohir.A09G093300' => 'ghi', 'Gohir.A09G105400' => 'ghi', 'Gohir.A09G105500' => 'ghi', 'Gohir.D06G154600' => 'ghi', 'Gohir.D07G120200' => 'ghi', 'Gohir.D08G013900' => 'ghi', 'Gohir.D09G093100' => 'ghi', 'Gohir.D09G102200' => 'ghi', 'Gohir.D09G102300' => 'ghi', 'Gorai.001G129400' => 'gra', 'Gorai.004G008200' => 'gra', 'Gorai.006G109800' => 'gra', 'Gorai.006G119500' => 'gra', 'Gorai.006G121300' => 'gra', 'Gorai.010G180700' => 'gra', 'GSVIVG01012716001' => 'vvi', 'GSVIVG01025118001' => 'vvi', 'GSVIVG01030439001' => 'vvi', 'GSVIVG01031397001' => 'vvi', 'HanXRQChr01g0004201' => 'han', 'HanXRQChr02g0054941' => 'han', 'HanXRQChr05g0141811' => 'han', 'HanXRQChr07g0197751' => 'han', 'HanXRQChr11g0346691' => 'han', 'HanXRQChr13g0396971' => 'han', 'HanXRQChr14g0432951' => 'han', 'HanXRQChr14g0452001' => 'han', 'HanXRQChr15g0496681' => 'han', 'HanXRQChr17g0557491' => 'han', 'HanXRQChr17g0557501' => 'han', 'Haze_06809' => 'cav', 'Haze_12852' => 'cav', 'Haze_15850' => 'cav', 'Haze_23446' => 'cav', 'Haze_23942' => 'cav', 'Haze_23943' => 'cav', 'Hma1.2p1_0091F.1_g046450' => 'hma', 'Hma1.2p1_0128F.1_g059910' => 'hma', 'Hma1.2p1_0249F.1_g102260' => 'hma', 'Hma1.2p1_0453F.1_g156190' => 'hma', 'Hma1.2p1_0695F.1_g204380' => 'hma', 'Hma1.2p1_0749F.1_g212650' => 'hma', 'Hma1.2p1_2156F.1_g315420' => 'hma', 'Hma1.2p1_2686F.1_g326940' => 'hma', 'HPP92_006428' => 'vpl', 'HPP92_012069' => 'vpl', 'HPP92_014129' => 'vpl', 'HPP92_014133' => 'vpl', 'HPP92_017315' => 'vpl', 'HPP92_026445' => 'vpl', 'HPP92_026446' => 'vpl', 'Hund00774' => 'sun', 'Hund07682' => 'sun', 'Hund21413' => 'sun', 'Hund23462' => 'sun', 'Hund23463' => 'sun', 'Lalb_Chr03g0027911' => 'lal', 'Lalb_Chr13g0304271' => 'lal', 'Lalb_Chr19g0137471' => 'lal', 'Lalb_Chr22g0350651' => 'lal', 'Lalb_Chr24g0395151' => 'lal', 'Lj1A1231T40' => 'lonja', 'Lj1A221T48' => 'lonja', 'Lj1C924T12' => 'lonja', 'Lj2C993G6' => 'lonja', 'Lj3g0005790' => 'lja', 'Lj3g0015432' => 'lja', 'Lj3g0017722' => 'lja', 'Lj3g0018497' => 'lja', 'Lj4g0025071' => 'lja', 'Lsat_1_v5_gn_1_129680' => 'lsa', 'Lsat_1_v5_gn_2_25321' => 'lsa', 'Lsat_1_v5_gn_2_95461' => 'lsa', 'Lsat_1_v5_gn_4_159620' => 'lsa', 'Lsat_1_v5_gn_6_41301' => 'lsa', 'Lsat_1_v5_gn_6_74660' => 'lsa', 'Lsat_1_v5_gn_7_11520' => 'lsa', 'Lsat_1_v5_gn_9_67680' => 'lsa', 'Manes.04G008300' => 'mes', 'Manes.04G008400' => 'mes', 'Manes.04G026500' => 'mes', 'Manes.10G135300' => 'mes', 'Manes.11G157300' => 'mes', 'Manes.12G074000' => 'mes', 'Manes.16G006200' => 'mes', 'Manes.17G026400' => 'mes', 'Mapoly0024s0086' => 'mpo', 'Mapoly0024s0087' => 'mpo', 'Mapoly0071s0057' => 'mpo', 'Mapoly0204s0012' => 'mpo', 'MBI04_g37681_MAGBIO' => 'mbi', 'MBI05_g17779_MAGBIO' => 'mbi', 'MBI12_g31184_MAGBIO' => 'mbi', 'MBI17_g11083_MAGBIO' => 'mbi', 'MBI18_g03883_MAGBIO' => 'mbi', 'MBI18_g28940_MAGBIO' => 'mbi', 'MCO01G690' => 'mco', 'MD03G1109900' => 'mdo', 'MD03G1134800' => 'mdo', 'MD05G1348000' => 'mdo', 'MD10G1322400' => 'mdo', 'MD11G1123300' => 'mdo', 'MD11G1157600' => 'mdo', 'Medtr2g084875' => 'mtr', 'Medtr2g088130' => 'mtr', 'Medtr4g055310' => 'mtr', 'Medtr4g061070' => 'mtr', 'Medtr4g132250' => 'mtr', 'MELO3C004795.2' => 'cme', 'MELO3C004797.2' => 'cme', 'MELO3C007396.2' => 'cme', 'MELO3C019277.2' => 'cme', 'MELO3C021449.2' => 'cme', 'MELO3C025736.2' => 'cme', 'Migut.D02175' => 'egut', 'Migut.H01573' => 'egut', 'Migut.M01327' => 'egut', 'Migut.N02513' => 'egut', 'MSTRG.14638' => 'ama', 'MSTRG.18632' => 'ama', 'MSTRG.7203' => 'ama', 'Nitab4.5_0000533g0140' => 'nta', 'Nitab4.5_0000888g0150' => 'nta', 'Nitab4.5_0001453g0040' => 'nta', 'Nitab4.5_0002827g0090' => 'nta', 'Nitab4.5_0003082g0040' => 'nta', 'Nitab4.5_0007799g0040' => 'nta', 'Nitab4.5_0008983g0010' => 'nta', 'Nitab4.5_0009017g0020' => 'nta', 'Nn1g02132' => 'nnu', 'Nn1g03492' => 'nnu', 'Nn1g03493' => 'nnu', 'Nn1g03494' => 'nnu', 'Nn1g07164' => 'nnu', 'Nn1g07291' => 'nnu', 'Nn2g10655' => 'nnu', 'Nn2g11652' => 'nnu', 'Nn2g14008' => 'nnu', 'Nn3g17476' => 'nnu', 'Nn3g17477' => 'nnu', 'Nn4g22370' => 'nnu', 'Nn4g25255' => 'nnu', 'Nn5g27755' => 'nnu', 'Nn6g34260' => 'nnu', 'Nn6g35041' => 'nnu', 'Oeu005924.1' => 'oeu', 'Oeu008383.1' => 'oeu', 'Oeu014928.1' => 'oeu', 'Oeu019889.1' => 'oeu', 'Oeu022271.1' => 'oeu', 'Oeu025271.1' => 'oeu', 'Oeu036302.1' => 'oeu', 'Oeu044100.1' => 'oeu', 'Os01g0528300' => 'osa', 'Os03g0286200' => 'osa', 'Os04g0406600' => 'osa', 'Os07g0512000' => 'osa', 'Os07g0694600' => 'osa', 'Os08g0411000' => 'osa', 'Os09g0565700' => 'osa', 'Os09g0566050' => 'osa', 'Os10g0523700' => 'osa', 'Peaxi162Scf00002g00514' => 'pax', 'Peaxi162Scf00047g01817' => 'pax', 'Peaxi162Scf00114g00001' => 'pax', 'Peaxi162Scf00147g00613' => 'pax', 'Peaxi162Scf00389g00425' => 'pax', 'PGR042G1139' => 'pgr', 'PGR042G3273' => 'pgr', 'PGR102G2180' => 'pgr', 'PGR119G0234' => 'pgr', 'PGR119G0668' => 'pgr', 'PGSC0003DMG400007122' => 'stu', 'PGSC0003DMG400016478' => 'stu', 'PGSC0003DMG400025374' => 'stu', 'PGSC0003DMG400026536' => 'stu', 'Phvul.003G079600' => 'pvu', 'Phvul.005G115600' => 'pvu', 'Phvul.005G127100' => 'pvu', 'Phvul.006G149500' => 'pvu', 'Phvul.006G149600' => 'pvu', 'Phvul.011G071800' => 'pvu', 'Phvul.011G090400' => 'pvu', 'Potri.004G013400' => 'ptr', 'Potri.004G188100' => 'ptr', 'Potri.008G195500' => 'ptr', 'Potri.009G148800' => 'ptr', 'Potri.011G004700' => 'ptr', 'Pp3c17_22810' => 'ppa', 'Pp3c18_4480' => 'ppa', 'Pp3c19_13030' => 'ppa', 'Pp3c1_33620' => 'ppa', 'Pp3c2_9380' => 'ppa', 'PRCOL_00001023' => 'pco', 'Prupe.3G216300' => 'ppe', 'Prupe.4G019500' => 'ppe', 'Prupe.6G092500' => 'ppe', 'Prupe.6G119200' => 'ppe', 'Psat0s1945g0080' => 'psa', 'Psat0s4167g0040' => 'psa', 'Psat1g185800' => 'psa', 'Psat4g006440' => 'psa', 'Psat4g006480' => 'psa', 'Psat4g168120' => 'psa', 'Psat5g255680' => 'psa', 'Psat5g261760' => 'psa', 'Psat7g222120' => 'psa', 'PSO063G7252' => 'pso', 'PSO170G4778' => 'pso', 'PSO210G2249' => 'pso', 'PSO339G2411' => 'pso', 'PSO339G2457' => 'pso', 'PSO339G2854' => 'pso', 'PSO339G4288' => 'pso', 'PSO339G4615' => 'pso', 'PSO384G2796' => 'pso', 'PSO384G2940' => 'pso', 'PSO384G4227' => 'pso', 'PSO478G1425' => 'pso', 'PSO541G3863' => 'pso', 'PSO675G0507' => 'pso', 'PSO782G0338' => 'pso', 'PSO832G0644' => 'pso', 'QL01p013664' => 'qlo', 'QL01p036598' => 'qlo', 'QL05p072984' => 'qlo', 'QL08p005768' => 'qlo', 'QL08p032743' => 'qlo', 'QL93p0073_0439' => 'qlo', 'QL93p0073_0444' => 'qlo', 'RcHm_v2.0_Chr5g0002851' => 'rch', 'RcHm_v2.0_Chr5g0055201' => 'rch', 'RcHm_v2.0_Chr5g0061191' => 'rch', 'RcHm_v2.0_Chr7g0203231' => 'rch', 'Rhsim01G0208100' => 'rsi', 'Rhsim01G0208200' => 'rsi', 'Rhsim02G0106500' => 'rsi', 'Rhsim03G0107900' => 'rsi', 'Rhsim06G0163400' => 'rsi', 'Rhsim13G0105200' => 'rsi', 'Sabra04G0006300' => 'sbr', 'Sabra04G0127000' => 'sbr', 'Sabra08G0148700' => 'sbr', 'Sabra09G0117400' => 'sbr', 'SalBow1G3326' => 'sbo', 'SalBow3G3228' => 'sbo', 'SalBow6G1634' => 'sbo', 'SalBow6G3603' => 'sbo', 'SalBow6G5266' => 'sbo', 'SalBow7G2265' => 'sbo', 'SalBow8G0850' => 'sbo', 'SalBow8G2592' => 'sbo', 'Sc05g0009240' => 'sci', 'Sc12g0002300' => 'sci', 'Sc21g0000100' => 'sci', 'Sc21g0004720' => 'sci', 'Sed0002949' => 'sed', 'Sed0004114' => 'sed', 'Sed0004306' => 'sed', 'Sed0006172' => 'sed', 'Sed0008413' => 'sed', 'Sed0013809' => 'sed', 'Sed0019556' => 'sed', 'SEGI_03570' => 'sgi', 'SEGI_07859' => 'sgi', 'SEGI_15042' => 'sgi', 'SEGI_16263' => 'sgi', 'SEGI_16552' => 'sgi', 'SEGI_24331' => 'sgi', 'SEGI_27316' => 'sgi', 'SEGI_29521' => 'sgi', 'SEGI_41342' => 'sgi', 'SGA_v2.0_scaffold27G11617' => 'sas', 'SGA_v2.0_scaffold316G48428' => 'sas', 'SGA_v2.0_scaffold49G18261' => 'sas', 'SGA_v2.0_scaffold7G03831' => 'sas', 'SGA_v2.0_scaffold93G28359' => 'sas', 'SHI02210' => 'shi', 'SHI06028' => 'shi', 'SHI06321' => 'shi', 'SMO111G0012' => 'smo', 'SMO228G0080' => 'smo', 'SMO356G0756' => 'smo', 'Solyc02g080620.3' => 'sly', 'Solyc06g074530.1' => 'sly', 'Solyc11g066890.1' => 'sly', 'Solyc11g072520.3' => 'sly', 'Sopen02g025330' => 'spe', 'Sopen06g031000' => 'spe', 'Sopen09g008240' => 'spe', 'Sopen09g025210' => 'spe', 'Sopen11g026600' => 'spe', 'Sopen11g030170' => 'spe', 'Sp1g10420' => 'spa', 'Sp3g06570' => 'spa', 'Sp4g10660' => 'spa', 'Sp5g16460' => 'spa', 'Sp6g22710' => 'spa', 'TAR365G0112' => 'tar', 'TAR369G0717' => 'tar', 'TAR374G0976' => 'tar', 'TAR623G1128' => 'tar', 'TAR626G1937' => 'tar', 'TAR627G0123' => 'tar', 'TAR628G0305' => 'tar', 'TAR636G1176' => 'tar', 'TAR636G2442' => 'tar', 'THA.LOC104800556' => 'tha', 'THA.LOC104809501' => 'tha', 'THA.LOC104815126' => 'tha', 'THA.LOC104815732' => 'tha', 'THA.LOC104823528' => 'tha', 'Thecc.02G365600' => 'tca', 'Thecc.06G222300' => 'tca', 'Thecc.09G261800' => 'tca', 'Thecc.09G291400' => 'tca', 'Thhalv10003028m.g' => 'esa', 'Thhalv10007886m.g' => 'esa', 'Thhalv10016085m.g' => 'esa', 'Thhalv10016681m.g' => 'esa', 'Thhalv10020951m.g' => 'esa', 'TPR.G15598' => 'tpr', 'TPR.G29305' => 'tpr', 'TPR.G32395' => 'tpr', 'TPR.G36998' => 'tpr', 'TPR.G4227' => 'tpr', 'TWI18G1433' => 'twi', 'TWI31G0755' => 'twi', 'TWI38G0912' => 'twi', 'TWI75G1097' => 'twi', 'TWI75G1619' => 'twi', 'TWI79G1336' => 'twi', 'unitig_0.g943' => 'ugi', 'unitig_0.g944' => 'ugi', 'unitig_22.g6646' => 'ugi', 'unitig_37.g12681' => 'ugi', 'unitig_8.g3290' => 'ugi', 'vmacro03278' => 'vma', 'vmacro12197' => 'vma', 'vmacro14478' => 'vma', 'vmacro15787' => 'vma', 'vmacro15789' => 'vma', 'vmacro15790' => 'vma', 'vmacro15806' => 'vma', 'vmacro22907' => 'vma', 'vmacro22908' => 'vma', 'vmacro22909' => 'vma', 'vmacro23108' => 'vma', 'VMungo0540G0540' => 'vmu', 'VMungo0540G2468' => 'vmu', 'VMungo1080G0390' => 'vmu', 'VMungo1080G1165' => 'vmu', 'VMungo1127G0170' => 'vmu', 'VMungo1127G2099' => 'vmu', 'VMungo1215G3013' => 'vmu', 'Zm00001eb013110' => 'zma', 'Zm00001eb084260' => 'zma', 'Zm00001eb096110' => 'zma', 'Zm00001eb217510' => 'zma', 'Zm00001eb322550' => 'zma', 'Zm00001eb390770' => 'zma', 'Zm00001eb397170' => 'zma', 'Zm00001eb404610' => 'zma', 'Zm00001eb421790' => 'zma' ) $gf_id = 'HOM05D000911' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000911' ) $data_identifier = 'HOM05D000911' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 16, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 5, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 6, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 8, 'nnu' => (int) 16, 'oeu' => (int) 8, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 5, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 16, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421790' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000911', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27780' => 'bna', 'A03p35380' => 'bna', 'A04p21160' => 'bna', 'A05p40570' => 'bna', 'A06p26900' => 'bna', 'A08p33230' => 'bna', 'A09p65960' => 'bna', 'A10p18290' => 'bna', 'Aa31LG1G12990' => 'aar', 'Aa31LG1G2980' => 'aar', 'Aa31LG4G14320' => 'aar', 'Aa31LG7G11800' => 'aar', 'Aa31sc36G50' => 'aar', 'Aa31sc36G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3721' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5459' => 'aag', 'Actinidia03028' => 'ach', 'Actinidia03753' => 'ach', 'Actinidia04187' => 'ach', 'Actinidia05509' => 'ach', 'Actinidia24180' => 'ach', 'Actinidia26906' => 'ach', 'Actinidia37097' => 'ach', 'Actinidia38249' => 'ach', 'Ah.01g003470' => 'amhyb', 'Ah.01g004580' => 'amhyb', 'Ah.01g014850' => 'amhyb', 'Ah.01g016830' => 'amhyb', 'Ah.14g088000' => 'amhyb', 'AL1G22980' => 'aly', 'AL3G18990' => 'aly', 'AL4G22440' => 'aly', 'AL4G33180' => 'aly', 'AL5G22920' => 'aly', 'AL6G33660' => 'aly', 'AL8G20720' => 'aly', 'Aqoxy1G00935' => 'aox', 'Aqoxy1G02094' => 'aox', 'Aqoxy2G01239' => 'aox', 'Aqoxy4G01870' => 'aox', 'Aqoxy7G00450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.36ZVTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71EM27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5D6C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH3WRE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3NCM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RIM768' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YB5YRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z36GDV' => 'arhy', 'AT1G08250' => 'ath', 'AT1G11790' => 'ath', 'AT2G27820' => 'ath', 'AT3G07630' => 'ath', 'AT3G44720' => 'ath', 'AT5G22630' => 'ath', 'ATR0693G304' => 'atr', 'ATR0794G109' => 'atr', 'ATR0820G120' => 'atr', 'ATR1159G064' => 'atr', 'Atru.chr10.2239' => 'acertr', 'Atru.chr3.3371' => 'acertr', 'Atru.chr6.3202' => 'acertr', 'AUR62006499' => 'cqu', 'AUR62012718' => 'cqu', 'AUR62021938' => 'cqu', 'AUR62023932' => 'cqu', 'AUR62025034' => 'cqu', 'AUR62025035' => 'cqu', 'AUR62038307' => 'cqu', 'AUR62043466' => 'cqu', 'BcaB02g10748' => 'bca', 'BcaB03g13231' => 'bca', 'BcaB03g14689' => 'bca', 'BcaB05g22716' => 'bca', 'BcaB06g28172' => 'bca', 'BcaB08g36413' => 'bca', 'BcaC01g02186' => 'bca', 'BcaC01g04272' => 'bca', 'BcaC02g08080' => 'bca', 'BcaC02g08227' => 'bca', 'BcaC03g13901' => 'bca', 'BcaC04g19593' => 'bca', 'BcaC04g20874' => 'bca', 'BcaC05g29557' => 'bca', 'BcaC06g35505' => 'bca', 'BcaC07g41954' => 'bca', 'BcaC07g41955' => 'bca', 'BcaC07g41956' => 'bca', 'BcaC07g42519' => 'bca', 'BcaC07g42520' => 'bca', 'BcaC07g42523' => 'bca', 'BcaC07g42524' => 'bca', 'BcaC07g42525' => 'bca', 'BcaC08g47480' => 'bca', 'BcaC08g47481' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00530' => 'bna', 'BolC2t07178H' => 'bol', 'BolC3t16567H' => 'bol', 'BolC4t27234H' => 'bol', 'BolC5t29728H' => 'bol', 'BolC5t34622H' => 'bol', 'BolC6t40321H' => 'bol', 'BolC7t42028H' => 'bol', 'BolC8t49125H' => 'bol', 'BolC8t52538H' => 'bol', 'BolC8t52539H' => 'bol', 'BolC9t56681H' => 'bol', 'BolC9t58266H' => 'bol', 'BolSC21t60294H' => 'bol', 'BraA02t05670Z' => 'bra', 'BraA03t12716Z' => 'bra', 'BraA04t17685Z' => 'bra', 'BraA05t22788Z' => 'bra', 'BraA06t24032Z' => 'bra', 'BraA06t25625Z' => 'bra', 'BraA07t27930Z' => 'bra', 'BraA08t35242Z' => 'bra', 'BraA09t38609Z' => 'bra', 'BraA10t43905Z' => 'bra', 'C02p11060' => 'bna', 'C03p42990' => 'bna', 'C03p67310' => 'bna', 'C04p56990' => 'bna', 'C04p58660' => 'bna', 'C05p09890' => 'bna', 'C05p59680' => 'bna', 'C06p19830' => 'bna', 'C06p53040' => 'bna', 'C07p15230' => 'bna', 'C08p50070' => 'bna', 'C08p50090' => 'bna', 'C09p38330' => 'bna', 'C09p53940' => 'bna', 'CAN.G1014.1' => 'can', 'CAN.G644.30' => 'can', 'CAN.G84.47' => 'can', 'CAN.G919.8' => 'can', 'CANSAT54G0113' => 'cansat', 'CANSAT54G1286' => 'cansat', 'CANSAT64G1020' => 'cansat', 'CARHR008080' => 'chi', 'CARHR008090' => 'chi', 'CARHR012130' => 'chi', 'CARHR038390' => 'chi', 'CARHR082330' => 'chi', 'CARHR120520' => 'chi', 'CARHR151470' => 'chi', 'CARHR190950' => 'chi', 'Carub.0001s0760' => 'cru', 'Carub.0001s1146' => 'cru', 'Carub.0003s0721' => 'cru', 'Carub.0004s0858' => 'cru', 'Carub.0005s1040' => 'cru', 'Carub.0006s2035' => 'cru', 'Carub.0015s0005' => 'cru', 'Ca_01607_v3' => 'car', 'Ca_01677_v3' => 'car', 'Ca_06087_v3' => 'car', 'Ca_19238_v3' => 'car', 'Ca_19373_v3' => 'car', 'Ca_21079_v3' => 'car', 'CBR_g54016' => 'cbr', 'CBR_g54018' => 'cbr', 'CBR_g54020' => 'cbr', 'Cc01_g09780' => 'ccan', 'Cc01_g11680' => 'ccan', 'Cc02_g15610' => 'ccan', 'Cc05_g04350' => 'ccan', 'Cc09_g01580' => 'ccan', 'CDE01G0795' => 'cde', 'CDE02G2024' => 'cde', 'CDE02G2260' => 'cde', 'CDE02G4561' => 'cde', 'CDE05G2733' => 'cde', 'CDE05G3422' => 'cde', 'CDE06G2003' => 'cde', 'CDE08G0576' => 'cde', 'CDE09G0048' => 'cde', 'CDE11G0805' => 'cde', 'Cfa003644' => 'cfa', 'Cfa006290' => 'cfa', 'Cfa010080' => 'cfa', 'Cfa011376' => 'cfa', 'Cfa011576' => 'cfa', 'Cfa011577' => 'cfa', 'Cfa014389' => 'cfa', 'Ciclev10006044m.g' => 'ccl', 'Ciclev10006954m.g' => 'ccl', 'Ciclev10015131m.g' => 'ccl', 'Ciclev10015580m.g' => 'ccl', 'Ciclev10028359m.g' => 'ccl', 'Ciclev10028573m.g' => 'ccl', 'CiPaw.03G159300' => 'cil', 'CiPaw.04G115100' => 'cil', 'CiPaw.09G092800' => 'cil', 'CiPaw.10G071800' => 'cil', 'CiPaw.13G105800' => 'cil', 'CiPaw.13G141000' => 'cil', 'CiPaw.14G103400' => 'cil', 'ClCG01G012700' => 'cla', 'ClCG01G012720' => 'cla', 'ClCG01G021920' => 'cla', 'ClCG02G008870' => 'cla', 'ClCG02G020840' => 'cla', 'ClCG02G021930' => 'cla', 'COL.COLO4_19302' => 'col', 'COL.COLO4_25262' => 'col', 'COL.COLO4_31788' => 'col', 'Cpa.g.c34684' => 'cpa', 'Cpa.g.c36520.1' => 'cpa', 'Cpa.g.c45626' => 'cpa', 'Cpa.g.sc121.17' => 'cpa', 'Cpa.g.sc13.22' => 'cpa', 'Cpa.g.sc87.88' => 'cpa', 'Cre06.g261800' => 'cre', 'CsaV3_1G014500' => 'csa', 'CsaV3_1G014510' => 'csa', 'CsaV3_2G034880' => 'csa', 'CsaV3_6G014760' => 'csa', 'CsaV3_6G021500' => 'csa', 'CsaV3_6G048980' => 'csa', 'CSS0002511' => 'camsi', 'CSS0007556' => 'camsi', 'CSS0008532' => 'camsi', 'CSS0009709' => 'camsi', 'CSS0010486' => 'camsi', 'CSS0016768' => 'camsi', 'CSS0023512' => 'camsi', 'CSS0025341' => 'camsi', 'CSS0027999' => 'camsi', 'CSS0028944' => 'camsi', 'CSS0032292' => 'camsi', 'CSS0032464' => 'camsi', 'CSS0037153' => 'camsi', 'CSS0039256' => 'camsi', 'CSS0048392' => 'camsi', 'CSS0050458' => 'camsi', 'DCAR_004224' => 'dca', 'DCAR_006147' => 'dca', 'DCAR_006465' => 'dca', 'DCAR_008159' => 'dca', 'DCAR_012164' => 'dca', 'DCAR_019764' => 'dca', 'Dinv05418' => 'din', 'Dinv10839' => 'din', 'Dinv12521' => 'din', 'Dinv13900' => 'din', 'Dinv29426' => 'din', 'Duzib150G0263' => 'dzi', 'Duzib168G1178' => 'dzi', 'Duzib168G1924' => 'dzi', 'Duzib170G0299' => 'dzi', 'Duzib170G0813' => 'dzi', 'Duzib235G1128' => 'dzi', 'Duzib248G1060' => 'dzi', 'ECA232G1910' => 'eca', 'ECA233G4621' => 'eca', 'ECA238G1216' => 'eca', 'ECA238G1784' => 'eca', 'ECA248G1242' => 'eca', 'EL10Ac8g20071' => 'bvu', 'EL10Ac9g21086' => 'bvu', 'EL10Ac9g22407' => 'bvu', 'EL10Ac9g22412' => 'bvu', 'Eucgr.A01119' => 'egr', 'Eucgr.E04043' => 'egr', 'Eucgr.J00428' => 'egr', 'Eucgr.J00958' => 'egr', 'FAN11G3091' => 'fan', 'FAN11G3651' => 'fan', 'FAN16G2566' => 'fan', 'FAN21G3155' => 'fan', 'FAN21G3400' => 'fan', 'FAN21G3543' => 'fan', 'FAN25G0234' => 'fan', 'FAN25G1422' => 'fan', 'FAN25G3392' => 'fan', 'FvH4_3g01940' => 'fve', 'FvH4_3g29870' => 'fve', 'FvH4_3g33680' => 'fve', 'Glyma.09G004200' => 'gma', 'Glyma.11G151288' => 'gma', 'Glyma.11G189100' => 'gma', 'Glyma.12G072500' => 'gma', 'Glyma.12G085500' => 'gma', 'Glyma.12G181800' => 'gma', 'Glyma.12G193000' => 'gma', 'Glyma.13G309300' => 'gma', 'Glyma.13G319000' => 'gma', 'Glyma.17G012600' => 'gma', 'Gohir.A06G148600' => 'ghi', 'Gohir.A07G115800' => 'ghi', 'Gohir.A08G003600' => 'ghi', 'Gohir.A09G093300' => 'ghi', 'Gohir.A09G105400' => 'ghi', 'Gohir.A09G105500' => 'ghi', 'Gohir.D06G154600' => 'ghi', 'Gohir.D07G120200' => 'ghi', 'Gohir.D08G013900' => 'ghi', 'Gohir.D09G093100' => 'ghi', 'Gohir.D09G102200' => 'ghi', 'Gohir.D09G102300' => 'ghi', 'Gorai.001G129400' => 'gra', 'Gorai.004G008200' => 'gra', 'Gorai.006G109800' => 'gra', 'Gorai.006G119500' => 'gra', 'Gorai.006G121300' => 'gra', 'Gorai.010G180700' => 'gra', 'GSVIVG01012716001' => 'vvi', 'GSVIVG01025118001' => 'vvi', 'GSVIVG01030439001' => 'vvi', 'GSVIVG01031397001' => 'vvi', 'HanXRQChr01g0004201' => 'han', 'HanXRQChr02g0054941' => 'han', 'HanXRQChr05g0141811' => 'han', 'HanXRQChr07g0197751' => 'han', 'HanXRQChr11g0346691' => 'han', 'HanXRQChr13g0396971' => 'han', 'HanXRQChr14g0432951' => 'han', 'HanXRQChr14g0452001' => 'han', 'HanXRQChr15g0496681' => 'han', 'HanXRQChr17g0557491' => 'han', 'HanXRQChr17g0557501' => 'han', 'Haze_06809' => 'cav', 'Haze_12852' => 'cav', 'Haze_15850' => 'cav', 'Haze_23446' => 'cav', 'Haze_23942' => 'cav', 'Haze_23943' => 'cav', 'Hma1.2p1_0091F.1_g046450' => 'hma', 'Hma1.2p1_0128F.1_g059910' => 'hma', 'Hma1.2p1_0249F.1_g102260' => 'hma', 'Hma1.2p1_0453F.1_g156190' => 'hma', 'Hma1.2p1_0695F.1_g204380' => 'hma', 'Hma1.2p1_0749F.1_g212650' => 'hma', 'Hma1.2p1_2156F.1_g315420' => 'hma', 'Hma1.2p1_2686F.1_g326940' => 'hma', 'HPP92_006428' => 'vpl', 'HPP92_012069' => 'vpl', 'HPP92_014129' => 'vpl', 'HPP92_014133' => 'vpl', 'HPP92_017315' => 'vpl', 'HPP92_026445' => 'vpl', 'HPP92_026446' => 'vpl', 'Hund00774' => 'sun', 'Hund07682' => 'sun', 'Hund21413' => 'sun', 'Hund23462' => 'sun', 'Hund23463' => 'sun', 'Lalb_Chr03g0027911' => 'lal', 'Lalb_Chr13g0304271' => 'lal', 'Lalb_Chr19g0137471' => 'lal', 'Lalb_Chr22g0350651' => 'lal', 'Lalb_Chr24g0395151' => 'lal', 'Lj1A1231T40' => 'lonja', 'Lj1A221T48' => 'lonja', 'Lj1C924T12' => 'lonja', 'Lj2C993G6' => 'lonja', 'Lj3g0005790' => 'lja', 'Lj3g0015432' => 'lja', 'Lj3g0017722' => 'lja', 'Lj3g0018497' => 'lja', 'Lj4g0025071' => 'lja', 'Lsat_1_v5_gn_1_129680' => 'lsa', 'Lsat_1_v5_gn_2_25321' => 'lsa', 'Lsat_1_v5_gn_2_95461' => 'lsa', 'Lsat_1_v5_gn_4_159620' => 'lsa', 'Lsat_1_v5_gn_6_41301' => 'lsa', 'Lsat_1_v5_gn_6_74660' => 'lsa', 'Lsat_1_v5_gn_7_11520' => 'lsa', 'Lsat_1_v5_gn_9_67680' => 'lsa', 'Manes.04G008300' => 'mes', 'Manes.04G008400' => 'mes', 'Manes.04G026500' => 'mes', 'Manes.10G135300' => 'mes', 'Manes.11G157300' => 'mes', 'Manes.12G074000' => 'mes', 'Manes.16G006200' => 'mes', 'Manes.17G026400' => 'mes', 'Mapoly0024s0086' => 'mpo', 'Mapoly0024s0087' => 'mpo', 'Mapoly0071s0057' => 'mpo', 'Mapoly0204s0012' => 'mpo', 'MBI04_g37681_MAGBIO' => 'mbi', 'MBI05_g17779_MAGBIO' => 'mbi', 'MBI12_g31184_MAGBIO' => 'mbi', 'MBI17_g11083_MAGBIO' => 'mbi', 'MBI18_g03883_MAGBIO' => 'mbi', 'MBI18_g28940_MAGBIO' => 'mbi', 'MCO01G690' => 'mco', 'MD03G1109900' => 'mdo', 'MD03G1134800' => 'mdo', 'MD05G1348000' => 'mdo', 'MD10G1322400' => 'mdo', 'MD11G1123300' => 'mdo', 'MD11G1157600' => 'mdo', 'Medtr2g084875' => 'mtr', 'Medtr2g088130' => 'mtr', 'Medtr4g055310' => 'mtr', 'Medtr4g061070' => 'mtr', 'Medtr4g132250' => 'mtr', 'MELO3C004795.2' => 'cme', 'MELO3C004797.2' => 'cme', 'MELO3C007396.2' => 'cme', 'MELO3C019277.2' => 'cme', 'MELO3C021449.2' => 'cme', 'MELO3C025736.2' => 'cme', 'Migut.D02175' => 'egut', 'Migut.H01573' => 'egut', 'Migut.M01327' => 'egut', 'Migut.N02513' => 'egut', 'MSTRG.14638' => 'ama', 'MSTRG.18632' => 'ama', 'MSTRG.7203' => 'ama', 'Nitab4.5_0000533g0140' => 'nta', 'Nitab4.5_0000888g0150' => 'nta', 'Nitab4.5_0001453g0040' => 'nta', 'Nitab4.5_0002827g0090' => 'nta', 'Nitab4.5_0003082g0040' => 'nta', 'Nitab4.5_0007799g0040' => 'nta', 'Nitab4.5_0008983g0010' => 'nta', 'Nitab4.5_0009017g0020' => 'nta', 'Nn1g02132' => 'nnu', 'Nn1g03492' => 'nnu', 'Nn1g03493' => 'nnu', 'Nn1g03494' => 'nnu', 'Nn1g07164' => 'nnu', 'Nn1g07291' => 'nnu', 'Nn2g10655' => 'nnu', 'Nn2g11652' => 'nnu', 'Nn2g14008' => 'nnu', 'Nn3g17476' => 'nnu', 'Nn3g17477' => 'nnu', 'Nn4g22370' => 'nnu', 'Nn4g25255' => 'nnu', 'Nn5g27755' => 'nnu', 'Nn6g34260' => 'nnu', 'Nn6g35041' => 'nnu', 'Oeu005924.1' => 'oeu', 'Oeu008383.1' => 'oeu', 'Oeu014928.1' => 'oeu', 'Oeu019889.1' => 'oeu', 'Oeu022271.1' => 'oeu', 'Oeu025271.1' => 'oeu', 'Oeu036302.1' => 'oeu', 'Oeu044100.1' => 'oeu', 'Os01g0528300' => 'osa', 'Os03g0286200' => 'osa', 'Os04g0406600' => 'osa', 'Os07g0512000' => 'osa', 'Os07g0694600' => 'osa', 'Os08g0411000' => 'osa', 'Os09g0565700' => 'osa', 'Os09g0566050' => 'osa', 'Os10g0523700' => 'osa', 'Peaxi162Scf00002g00514' => 'pax', 'Peaxi162Scf00047g01817' => 'pax', 'Peaxi162Scf00114g00001' => 'pax', 'Peaxi162Scf00147g00613' => 'pax', 'Peaxi162Scf00389g00425' => 'pax', 'PGR042G1139' => 'pgr', 'PGR042G3273' => 'pgr', 'PGR102G2180' => 'pgr', 'PGR119G0234' => 'pgr', 'PGR119G0668' => 'pgr', 'PGSC0003DMG400007122' => 'stu', 'PGSC0003DMG400016478' => 'stu', 'PGSC0003DMG400025374' => 'stu', 'PGSC0003DMG400026536' => 'stu', 'Phvul.003G079600' => 'pvu', 'Phvul.005G115600' => 'pvu', 'Phvul.005G127100' => 'pvu', 'Phvul.006G149500' => 'pvu', 'Phvul.006G149600' => 'pvu', 'Phvul.011G071800' => 'pvu', 'Phvul.011G090400' => 'pvu', 'Potri.004G013400' => 'ptr', 'Potri.004G188100' => 'ptr', 'Potri.008G195500' => 'ptr', 'Potri.009G148800' => 'ptr', 'Potri.011G004700' => 'ptr', 'Pp3c17_22810' => 'ppa', 'Pp3c18_4480' => 'ppa', 'Pp3c19_13030' => 'ppa', 'Pp3c1_33620' => 'ppa', 'Pp3c2_9380' => 'ppa', 'PRCOL_00001023' => 'pco', 'Prupe.3G216300' => 'ppe', 'Prupe.4G019500' => 'ppe', 'Prupe.6G092500' => 'ppe', 'Prupe.6G119200' => 'ppe', 'Psat0s1945g0080' => 'psa', 'Psat0s4167g0040' => 'psa', 'Psat1g185800' => 'psa', 'Psat4g006440' => 'psa', 'Psat4g006480' => 'psa', 'Psat4g168120' => 'psa', 'Psat5g255680' => 'psa', 'Psat5g261760' => 'psa', 'Psat7g222120' => 'psa', 'PSO063G7252' => 'pso', 'PSO170G4778' => 'pso', 'PSO210G2249' => 'pso', 'PSO339G2411' => 'pso', 'PSO339G2457' => 'pso', 'PSO339G2854' => 'pso', 'PSO339G4288' => 'pso', 'PSO339G4615' => 'pso', 'PSO384G2796' => 'pso', 'PSO384G2940' => 'pso', 'PSO384G4227' => 'pso', 'PSO478G1425' => 'pso', 'PSO541G3863' => 'pso', 'PSO675G0507' => 'pso', 'PSO782G0338' => 'pso', 'PSO832G0644' => 'pso', 'QL01p013664' => 'qlo', 'QL01p036598' => 'qlo', 'QL05p072984' => 'qlo', 'QL08p005768' => 'qlo', 'QL08p032743' => 'qlo', 'QL93p0073_0439' => 'qlo', 'QL93p0073_0444' => 'qlo', 'RcHm_v2.0_Chr5g0002851' => 'rch', 'RcHm_v2.0_Chr5g0055201' => 'rch', 'RcHm_v2.0_Chr5g0061191' => 'rch', 'RcHm_v2.0_Chr7g0203231' => 'rch', 'Rhsim01G0208100' => 'rsi', 'Rhsim01G0208200' => 'rsi', 'Rhsim02G0106500' => 'rsi', 'Rhsim03G0107900' => 'rsi', 'Rhsim06G0163400' => 'rsi', 'Rhsim13G0105200' => 'rsi', 'Sabra04G0006300' => 'sbr', 'Sabra04G0127000' => 'sbr', 'Sabra08G0148700' => 'sbr', 'Sabra09G0117400' => 'sbr', 'SalBow1G3326' => 'sbo', 'SalBow3G3228' => 'sbo', 'SalBow6G1634' => 'sbo', 'SalBow6G3603' => 'sbo', 'SalBow6G5266' => 'sbo', 'SalBow7G2265' => 'sbo', 'SalBow8G0850' => 'sbo', 'SalBow8G2592' => 'sbo', 'Sc05g0009240' => 'sci', 'Sc12g0002300' => 'sci', 'Sc21g0000100' => 'sci', 'Sc21g0004720' => 'sci', 'Sed0002949' => 'sed', 'Sed0004114' => 'sed', 'Sed0004306' => 'sed', 'Sed0006172' => 'sed', 'Sed0008413' => 'sed', 'Sed0013809' => 'sed', 'Sed0019556' => 'sed', 'SEGI_03570' => 'sgi', 'SEGI_07859' => 'sgi', 'SEGI_15042' => 'sgi', 'SEGI_16263' => 'sgi', 'SEGI_16552' => 'sgi', 'SEGI_24331' => 'sgi', 'SEGI_27316' => 'sgi', 'SEGI_29521' => 'sgi', 'SEGI_41342' => 'sgi', 'SGA_v2.0_scaffold27G11617' => 'sas', 'SGA_v2.0_scaffold316G48428' => 'sas', 'SGA_v2.0_scaffold49G18261' => 'sas', 'SGA_v2.0_scaffold7G03831' => 'sas', 'SGA_v2.0_scaffold93G28359' => 'sas', 'SHI02210' => 'shi', 'SHI06028' => 'shi', 'SHI06321' => 'shi', 'SMO111G0012' => 'smo', 'SMO228G0080' => 'smo', 'SMO356G0756' => 'smo', 'Solyc02g080620.3' => 'sly', 'Solyc06g074530.1' => 'sly', 'Solyc11g066890.1' => 'sly', 'Solyc11g072520.3' => 'sly', 'Sopen02g025330' => 'spe', 'Sopen06g031000' => 'spe', 'Sopen09g008240' => 'spe', 'Sopen09g025210' => 'spe', 'Sopen11g026600' => 'spe', 'Sopen11g030170' => 'spe', 'Sp1g10420' => 'spa', 'Sp3g06570' => 'spa', 'Sp4g10660' => 'spa', 'Sp5g16460' => 'spa', 'Sp6g22710' => 'spa', 'TAR365G0112' => 'tar', 'TAR369G0717' => 'tar', 'TAR374G0976' => 'tar', 'TAR623G1128' => 'tar', 'TAR626G1937' => 'tar', 'TAR627G0123' => 'tar', 'TAR628G0305' => 'tar', 'TAR636G1176' => 'tar', 'TAR636G2442' => 'tar', 'THA.LOC104800556' => 'tha', 'THA.LOC104809501' => 'tha', 'THA.LOC104815126' => 'tha', 'THA.LOC104815732' => 'tha', 'THA.LOC104823528' => 'tha', 'Thecc.02G365600' => 'tca', 'Thecc.06G222300' => 'tca', 'Thecc.09G261800' => 'tca', 'Thecc.09G291400' => 'tca', 'Thhalv10003028m.g' => 'esa', 'Thhalv10007886m.g' => 'esa', 'Thhalv10016085m.g' => 'esa', 'Thhalv10016681m.g' => 'esa', 'Thhalv10020951m.g' => 'esa', 'TPR.G15598' => 'tpr', 'TPR.G29305' => 'tpr', 'TPR.G32395' => 'tpr', 'TPR.G36998' => 'tpr', 'TPR.G4227' => 'tpr', 'TWI18G1433' => 'twi', 'TWI31G0755' => 'twi', 'TWI38G0912' => 'twi', 'TWI75G1097' => 'twi', 'TWI75G1619' => 'twi', 'TWI79G1336' => 'twi', 'unitig_0.g943' => 'ugi', 'unitig_0.g944' => 'ugi', 'unitig_22.g6646' => 'ugi', 'unitig_37.g12681' => 'ugi', 'unitig_8.g3290' => 'ugi', 'vmacro03278' => 'vma', 'vmacro12197' => 'vma', 'vmacro14478' => 'vma', 'vmacro15787' => 'vma', 'vmacro15789' => 'vma', 'vmacro15790' => 'vma', 'vmacro15806' => 'vma', 'vmacro22907' => 'vma', 'vmacro22908' => 'vma', 'vmacro22909' => 'vma', 'vmacro23108' => 'vma', 'VMungo0540G0540' => 'vmu', 'VMungo0540G2468' => 'vmu', 'VMungo1080G0390' => 'vmu', 'VMungo1080G1165' => 'vmu', 'VMungo1127G0170' => 'vmu', 'VMungo1127G2099' => 'vmu', 'VMungo1215G3013' => 'vmu', 'Zm00001eb013110' => 'zma', 'Zm00001eb084260' => 'zma', 'Zm00001eb096110' => 'zma', 'Zm00001eb217510' => 'zma', 'Zm00001eb322550' => 'zma', 'Zm00001eb390770' => 'zma', 'Zm00001eb397170' => 'zma', 'Zm00001eb404610' => 'zma', 'Zm00001eb421790' => 'zma' ), 'gf_id' => 'HOM05D000911', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000911' ), 'data_identifier' => 'HOM05D000911', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000911', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27780' => 'bna', 'A03p35380' => 'bna', 'A04p21160' => 'bna', 'A05p40570' => 'bna', 'A06p26900' => 'bna', 'A08p33230' => 'bna', 'A09p65960' => 'bna', 'A10p18290' => 'bna', 'Aa31LG1G12990' => 'aar', 'Aa31LG1G2980' => 'aar', 'Aa31LG4G14320' => 'aar', 'Aa31LG7G11800' => 'aar', 'Aa31sc36G50' => 'aar', 'Aa31sc36G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3721' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5459' => 'aag', 'Actinidia03028' => 'ach', 'Actinidia03753' => 'ach', 'Actinidia04187' => 'ach', 'Actinidia05509' => 'ach', 'Actinidia24180' => 'ach', 'Actinidia26906' => 'ach', 'Actinidia37097' => 'ach', 'Actinidia38249' => 'ach', 'Ah.01g003470' => 'amhyb', 'Ah.01g004580' => 'amhyb', 'Ah.01g014850' => 'amhyb', 'Ah.01g016830' => 'amhyb', 'Ah.14g088000' => 'amhyb', 'AL1G22980' => 'aly', 'AL3G18990' => 'aly', 'AL4G22440' => 'aly', 'AL4G33180' => 'aly', 'AL5G22920' => 'aly', 'AL6G33660' => 'aly', 'AL8G20720' => 'aly', 'Aqoxy1G00935' => 'aox', 'Aqoxy1G02094' => 'aox', 'Aqoxy2G01239' => 'aox', 'Aqoxy4G01870' => 'aox', 'Aqoxy7G00450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.36ZVTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71EM27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5D6C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH3WRE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3NCM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RIM768' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YB5YRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z36GDV' => 'arhy', 'AT1G08250' => 'ath', 'AT1G11790' => 'ath', 'AT2G27820' => 'ath', 'AT3G07630' => 'ath', 'AT3G44720' => 'ath', 'AT5G22630' => 'ath', 'ATR0693G304' => 'atr', 'ATR0794G109' => 'atr', 'ATR0820G120' => 'atr', 'ATR1159G064' => 'atr', 'Atru.chr10.2239' => 'acertr', 'Atru.chr3.3371' => 'acertr', 'Atru.chr6.3202' => 'acertr', 'AUR62006499' => 'cqu', 'AUR62012718' => 'cqu', 'AUR62021938' => 'cqu', 'AUR62023932' => 'cqu', 'AUR62025034' => 'cqu', 'AUR62025035' => 'cqu', 'AUR62038307' => 'cqu', 'AUR62043466' => 'cqu', 'BcaB02g10748' => 'bca', 'BcaB03g13231' => 'bca', 'BcaB03g14689' => 'bca', 'BcaB05g22716' => 'bca', 'BcaB06g28172' => 'bca', 'BcaB08g36413' => 'bca', 'BcaC01g02186' => 'bca', 'BcaC01g04272' => 'bca', 'BcaC02g08080' => 'bca', 'BcaC02g08227' => 'bca', 'BcaC03g13901' => 'bca', 'BcaC04g19593' => 'bca', 'BcaC04g20874' => 'bca', 'BcaC05g29557' => 'bca', 'BcaC06g35505' => 'bca', 'BcaC07g41954' => 'bca', 'BcaC07g41955' => 'bca', 'BcaC07g41956' => 'bca', 'BcaC07g42519' => 'bca', 'BcaC07g42520' => 'bca', 'BcaC07g42523' => 'bca', 'BcaC07g42524' => 'bca', 'BcaC07g42525' => 'bca', 'BcaC08g47480' => 'bca', 'BcaC08g47481' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00530' => 'bna', 'BolC2t07178H' => 'bol', 'BolC3t16567H' => 'bol', 'BolC4t27234H' => 'bol', 'BolC5t29728H' => 'bol', 'BolC5t34622H' => 'bol', 'BolC6t40321H' => 'bol', 'BolC7t42028H' => 'bol', 'BolC8t49125H' => 'bol', 'BolC8t52538H' => 'bol', 'BolC8t52539H' => 'bol', 'BolC9t56681H' => 'bol', 'BolC9t58266H' => 'bol', 'BolSC21t60294H' => 'bol', 'BraA02t05670Z' => 'bra', 'BraA03t12716Z' => 'bra', 'BraA04t17685Z' => 'bra', 'BraA05t22788Z' => 'bra', 'BraA06t24032Z' => 'bra', 'BraA06t25625Z' => 'bra', 'BraA07t27930Z' => 'bra', 'BraA08t35242Z' => 'bra', 'BraA09t38609Z' => 'bra', 'BraA10t43905Z' => 'bra', 'C02p11060' => 'bna', 'C03p42990' => 'bna', 'C03p67310' => 'bna', 'C04p56990' => 'bna', 'C04p58660' => 'bna', 'C05p09890' => 'bna', 'C05p59680' => 'bna', 'C06p19830' => 'bna', 'C06p53040' => 'bna', 'C07p15230' => 'bna', 'C08p50070' => 'bna', 'C08p50090' => 'bna', 'C09p38330' => 'bna', 'C09p53940' => 'bna', 'CAN.G1014.1' => 'can', 'CAN.G644.30' => 'can', 'CAN.G84.47' => 'can', 'CAN.G919.8' => 'can', 'CANSAT54G0113' => 'cansat', 'CANSAT54G1286' => 'cansat', 'CANSAT64G1020' => 'cansat', 'CARHR008080' => 'chi', 'CARHR008090' => 'chi', 'CARHR012130' => 'chi', 'CARHR038390' => 'chi', 'CARHR082330' => 'chi', 'CARHR120520' => 'chi', 'CARHR151470' => 'chi', 'CARHR190950' => 'chi', 'Carub.0001s0760' => 'cru', 'Carub.0001s1146' => 'cru', 'Carub.0003s0721' => 'cru', 'Carub.0004s0858' => 'cru', 'Carub.0005s1040' => 'cru', 'Carub.0006s2035' => 'cru', 'Carub.0015s0005' => 'cru', 'Ca_01607_v3' => 'car', 'Ca_01677_v3' => 'car', 'Ca_06087_v3' => 'car', 'Ca_19238_v3' => 'car', 'Ca_19373_v3' => 'car', 'Ca_21079_v3' => 'car', 'CBR_g54016' => 'cbr', 'CBR_g54018' => 'cbr', 'CBR_g54020' => 'cbr', 'Cc01_g09780' => 'ccan', 'Cc01_g11680' => 'ccan', 'Cc02_g15610' => 'ccan', 'Cc05_g04350' => 'ccan', 'Cc09_g01580' => 'ccan', 'CDE01G0795' => 'cde', 'CDE02G2024' => 'cde', 'CDE02G2260' => 'cde', 'CDE02G4561' => 'cde', 'CDE05G2733' => 'cde', 'CDE05G3422' => 'cde', 'CDE06G2003' => 'cde', 'CDE08G0576' => 'cde', 'CDE09G0048' => 'cde', 'CDE11G0805' => 'cde', 'Cfa003644' => 'cfa', 'Cfa006290' => 'cfa', 'Cfa010080' => 'cfa', 'Cfa011376' => 'cfa', 'Cfa011576' => 'cfa', 'Cfa011577' => 'cfa', 'Cfa014389' => 'cfa', 'Ciclev10006044m.g' => 'ccl', 'Ciclev10006954m.g' => 'ccl', 'Ciclev10015131m.g' => 'ccl', 'Ciclev10015580m.g' => 'ccl', 'Ciclev10028359m.g' => 'ccl', 'Ciclev10028573m.g' => 'ccl', 'CiPaw.03G159300' => 'cil', 'CiPaw.04G115100' => 'cil', 'CiPaw.09G092800' => 'cil', 'CiPaw.10G071800' => 'cil', 'CiPaw.13G105800' => 'cil', 'CiPaw.13G141000' => 'cil', 'CiPaw.14G103400' => 'cil', 'ClCG01G012700' => 'cla', 'ClCG01G012720' => 'cla', 'ClCG01G021920' => 'cla', 'ClCG02G008870' => 'cla', 'ClCG02G020840' => 'cla', 'ClCG02G021930' => 'cla', 'COL.COLO4_19302' => 'col', 'COL.COLO4_25262' => 'col', 'COL.COLO4_31788' => 'col', 'Cpa.g.c34684' => 'cpa', 'Cpa.g.c36520.1' => 'cpa', 'Cpa.g.c45626' => 'cpa', 'Cpa.g.sc121.17' => 'cpa', 'Cpa.g.sc13.22' => 'cpa', 'Cpa.g.sc87.88' => 'cpa', 'Cre06.g261800' => 'cre', 'CsaV3_1G014500' => 'csa', 'CsaV3_1G014510' => 'csa', 'CsaV3_2G034880' => 'csa', 'CsaV3_6G014760' => 'csa', 'CsaV3_6G021500' => 'csa', 'CsaV3_6G048980' => 'csa', 'CSS0002511' => 'camsi', 'CSS0007556' => 'camsi', 'CSS0008532' => 'camsi', 'CSS0009709' => 'camsi', 'CSS0010486' => 'camsi', 'CSS0016768' => 'camsi', 'CSS0023512' => 'camsi', 'CSS0025341' => 'camsi', 'CSS0027999' => 'camsi', 'CSS0028944' => 'camsi', 'CSS0032292' => 'camsi', 'CSS0032464' => 'camsi', 'CSS0037153' => 'camsi', 'CSS0039256' => 'camsi', 'CSS0048392' => 'camsi', 'CSS0050458' => 'camsi', 'DCAR_004224' => 'dca', 'DCAR_006147' => 'dca', 'DCAR_006465' => 'dca', 'DCAR_008159' => 'dca', 'DCAR_012164' => 'dca', 'DCAR_019764' => 'dca', 'Dinv05418' => 'din', 'Dinv10839' => 'din', 'Dinv12521' => 'din', 'Dinv13900' => 'din', 'Dinv29426' => 'din', 'Duzib150G0263' => 'dzi', 'Duzib168G1178' => 'dzi', 'Duzib168G1924' => 'dzi', 'Duzib170G0299' => 'dzi', 'Duzib170G0813' => 'dzi', 'Duzib235G1128' => 'dzi', 'Duzib248G1060' => 'dzi', 'ECA232G1910' => 'eca', 'ECA233G4621' => 'eca', 'ECA238G1216' => 'eca', 'ECA238G1784' => 'eca', 'ECA248G1242' => 'eca', 'EL10Ac8g20071' => 'bvu', 'EL10Ac9g21086' => 'bvu', 'EL10Ac9g22407' => 'bvu', 'EL10Ac9g22412' => 'bvu', 'Eucgr.A01119' => 'egr', 'Eucgr.E04043' => 'egr', 'Eucgr.J00428' => 'egr', 'Eucgr.J00958' => 'egr', 'FAN11G3091' => 'fan', 'FAN11G3651' => 'fan', 'FAN16G2566' => 'fan', 'FAN21G3155' => 'fan', 'FAN21G3400' => 'fan', 'FAN21G3543' => 'fan', 'FAN25G0234' => 'fan', 'FAN25G1422' => 'fan', 'FAN25G3392' => 'fan', 'FvH4_3g01940' => 'fve', 'FvH4_3g29870' => 'fve', 'FvH4_3g33680' => 'fve', 'Glyma.09G004200' => 'gma', 'Glyma.11G151288' => 'gma', 'Glyma.11G189100' => 'gma', 'Glyma.12G072500' => 'gma', 'Glyma.12G085500' => 'gma', 'Glyma.12G181800' => 'gma', 'Glyma.12G193000' => 'gma', 'Glyma.13G309300' => 'gma', 'Glyma.13G319000' => 'gma', 'Glyma.17G012600' => 'gma', 'Gohir.A06G148600' => 'ghi', 'Gohir.A07G115800' => 'ghi', 'Gohir.A08G003600' => 'ghi', 'Gohir.A09G093300' => 'ghi', 'Gohir.A09G105400' => 'ghi', 'Gohir.A09G105500' => 'ghi', 'Gohir.D06G154600' => 'ghi', 'Gohir.D07G120200' => 'ghi', 'Gohir.D08G013900' => 'ghi', 'Gohir.D09G093100' => 'ghi', 'Gohir.D09G102200' => 'ghi', 'Gohir.D09G102300' => 'ghi', 'Gorai.001G129400' => 'gra', 'Gorai.004G008200' => 'gra', 'Gorai.006G109800' => 'gra', 'Gorai.006G119500' => 'gra', 'Gorai.006G121300' => 'gra', 'Gorai.010G180700' => 'gra', 'GSVIVG01012716001' => 'vvi', 'GSVIVG01025118001' => 'vvi', 'GSVIVG01030439001' => 'vvi', 'GSVIVG01031397001' => 'vvi', 'HanXRQChr01g0004201' => 'han', 'HanXRQChr02g0054941' => 'han', 'HanXRQChr05g0141811' => 'han', 'HanXRQChr07g0197751' => 'han', 'HanXRQChr11g0346691' => 'han', 'HanXRQChr13g0396971' => 'han', 'HanXRQChr14g0432951' => 'han', 'HanXRQChr14g0452001' => 'han', 'HanXRQChr15g0496681' => 'han', 'HanXRQChr17g0557491' => 'han', 'HanXRQChr17g0557501' => 'han', 'Haze_06809' => 'cav', 'Haze_12852' => 'cav', 'Haze_15850' => 'cav', 'Haze_23446' => 'cav', 'Haze_23942' => 'cav', 'Haze_23943' => 'cav', 'Hma1.2p1_0091F.1_g046450' => 'hma', 'Hma1.2p1_0128F.1_g059910' => 'hma', 'Hma1.2p1_0249F.1_g102260' => 'hma', 'Hma1.2p1_0453F.1_g156190' => 'hma', 'Hma1.2p1_0695F.1_g204380' => 'hma', 'Hma1.2p1_0749F.1_g212650' => 'hma', 'Hma1.2p1_2156F.1_g315420' => 'hma', 'Hma1.2p1_2686F.1_g326940' => 'hma', 'HPP92_006428' => 'vpl', 'HPP92_012069' => 'vpl', 'HPP92_014129' => 'vpl', 'HPP92_014133' => 'vpl', 'HPP92_017315' => 'vpl', 'HPP92_026445' => 'vpl', 'HPP92_026446' => 'vpl', 'Hund00774' => 'sun', 'Hund07682' => 'sun', 'Hund21413' => 'sun', 'Hund23462' => 'sun', 'Hund23463' => 'sun', 'Lalb_Chr03g0027911' => 'lal', 'Lalb_Chr13g0304271' => 'lal', 'Lalb_Chr19g0137471' => 'lal', 'Lalb_Chr22g0350651' => 'lal', 'Lalb_Chr24g0395151' => 'lal', 'Lj1A1231T40' => 'lonja', 'Lj1A221T48' => 'lonja', 'Lj1C924T12' => 'lonja', 'Lj2C993G6' => 'lonja', 'Lj3g0005790' => 'lja', 'Lj3g0015432' => 'lja', 'Lj3g0017722' => 'lja', 'Lj3g0018497' => 'lja', 'Lj4g0025071' => 'lja', 'Lsat_1_v5_gn_1_129680' => 'lsa', 'Lsat_1_v5_gn_2_25321' => 'lsa', 'Lsat_1_v5_gn_2_95461' => 'lsa', 'Lsat_1_v5_gn_4_159620' => 'lsa', 'Lsat_1_v5_gn_6_41301' => 'lsa', 'Lsat_1_v5_gn_6_74660' => 'lsa', 'Lsat_1_v5_gn_7_11520' => 'lsa', 'Lsat_1_v5_gn_9_67680' => 'lsa', 'Manes.04G008300' => 'mes', 'Manes.04G008400' => 'mes', 'Manes.04G026500' => 'mes', 'Manes.10G135300' => 'mes', 'Manes.11G157300' => 'mes', 'Manes.12G074000' => 'mes', 'Manes.16G006200' => 'mes', 'Manes.17G026400' => 'mes', 'Mapoly0024s0086' => 'mpo', 'Mapoly0024s0087' => 'mpo', 'Mapoly0071s0057' => 'mpo', 'Mapoly0204s0012' => 'mpo', 'MBI04_g37681_MAGBIO' => 'mbi', 'MBI05_g17779_MAGBIO' => 'mbi', 'MBI12_g31184_MAGBIO' => 'mbi', 'MBI17_g11083_MAGBIO' => 'mbi', 'MBI18_g03883_MAGBIO' => 'mbi', 'MBI18_g28940_MAGBIO' => 'mbi', 'MCO01G690' => 'mco', 'MD03G1109900' => 'mdo', 'MD03G1134800' => 'mdo', 'MD05G1348000' => 'mdo', 'MD10G1322400' => 'mdo', 'MD11G1123300' => 'mdo', 'MD11G1157600' => 'mdo', 'Medtr2g084875' => 'mtr', 'Medtr2g088130' => 'mtr', 'Medtr4g055310' => 'mtr', 'Medtr4g061070' => 'mtr', 'Medtr4g132250' => 'mtr', 'MELO3C004795.2' => 'cme', 'MELO3C004797.2' => 'cme', 'MELO3C007396.2' => 'cme', 'MELO3C019277.2' => 'cme', 'MELO3C021449.2' => 'cme', 'MELO3C025736.2' => 'cme', 'Migut.D02175' => 'egut', 'Migut.H01573' => 'egut', 'Migut.M01327' => 'egut', 'Migut.N02513' => 'egut', 'MSTRG.14638' => 'ama', 'MSTRG.18632' => 'ama', 'MSTRG.7203' => 'ama', 'Nitab4.5_0000533g0140' => 'nta', 'Nitab4.5_0000888g0150' => 'nta', 'Nitab4.5_0001453g0040' => 'nta', 'Nitab4.5_0002827g0090' => 'nta', 'Nitab4.5_0003082g0040' => 'nta', 'Nitab4.5_0007799g0040' => 'nta', 'Nitab4.5_0008983g0010' => 'nta', 'Nitab4.5_0009017g0020' => 'nta', 'Nn1g02132' => 'nnu', 'Nn1g03492' => 'nnu', 'Nn1g03493' => 'nnu', 'Nn1g03494' => 'nnu', 'Nn1g07164' => 'nnu', 'Nn1g07291' => 'nnu', 'Nn2g10655' => 'nnu', 'Nn2g11652' => 'nnu', 'Nn2g14008' => 'nnu', 'Nn3g17476' => 'nnu', 'Nn3g17477' => 'nnu', 'Nn4g22370' => 'nnu', 'Nn4g25255' => 'nnu', 'Nn5g27755' => 'nnu', 'Nn6g34260' => 'nnu', 'Nn6g35041' => 'nnu', 'Oeu005924.1' => 'oeu', 'Oeu008383.1' => 'oeu', 'Oeu014928.1' => 'oeu', 'Oeu019889.1' => 'oeu', 'Oeu022271.1' => 'oeu', 'Oeu025271.1' => 'oeu', 'Oeu036302.1' => 'oeu', 'Oeu044100.1' => 'oeu', 'Os01g0528300' => 'osa', 'Os03g0286200' => 'osa', 'Os04g0406600' => 'osa', 'Os07g0512000' => 'osa', 'Os07g0694600' => 'osa', 'Os08g0411000' => 'osa', 'Os09g0565700' => 'osa', 'Os09g0566050' => 'osa', 'Os10g0523700' => 'osa', 'Peaxi162Scf00002g00514' => 'pax', 'Peaxi162Scf00047g01817' => 'pax', 'Peaxi162Scf00114g00001' => 'pax', 'Peaxi162Scf00147g00613' => 'pax', 'Peaxi162Scf00389g00425' => 'pax', 'PGR042G1139' => 'pgr', 'PGR042G3273' => 'pgr', 'PGR102G2180' => 'pgr', 'PGR119G0234' => 'pgr', 'PGR119G0668' => 'pgr', 'PGSC0003DMG400007122' => 'stu', 'PGSC0003DMG400016478' => 'stu', 'PGSC0003DMG400025374' => 'stu', 'PGSC0003DMG400026536' => 'stu', 'Phvul.003G079600' => 'pvu', 'Phvul.005G115600' => 'pvu', 'Phvul.005G127100' => 'pvu', 'Phvul.006G149500' => 'pvu', 'Phvul.006G149600' => 'pvu', 'Phvul.011G071800' => 'pvu', 'Phvul.011G090400' => 'pvu', 'Potri.004G013400' => 'ptr', 'Potri.004G188100' => 'ptr', 'Potri.008G195500' => 'ptr', 'Potri.009G148800' => 'ptr', 'Potri.011G004700' => 'ptr', 'Pp3c17_22810' => 'ppa', 'Pp3c18_4480' => 'ppa', 'Pp3c19_13030' => 'ppa', 'Pp3c1_33620' => 'ppa', 'Pp3c2_9380' => 'ppa', 'PRCOL_00001023' => 'pco', 'Prupe.3G216300' => 'ppe', 'Prupe.4G019500' => 'ppe', 'Prupe.6G092500' => 'ppe', 'Prupe.6G119200' => 'ppe', 'Psat0s1945g0080' => 'psa', 'Psat0s4167g0040' => 'psa', 'Psat1g185800' => 'psa', 'Psat4g006440' => 'psa', 'Psat4g006480' => 'psa', 'Psat4g168120' => 'psa', 'Psat5g255680' => 'psa', 'Psat5g261760' => 'psa', 'Psat7g222120' => 'psa', 'PSO063G7252' => 'pso', 'PSO170G4778' => 'pso', 'PSO210G2249' => 'pso', 'PSO339G2411' => 'pso', 'PSO339G2457' => 'pso', 'PSO339G2854' => 'pso', 'PSO339G4288' => 'pso', 'PSO339G4615' => 'pso', 'PSO384G2796' => 'pso', 'PSO384G2940' => 'pso', 'PSO384G4227' => 'pso', 'PSO478G1425' => 'pso', 'PSO541G3863' => 'pso', 'PSO675G0507' => 'pso', 'PSO782G0338' => 'pso', 'PSO832G0644' => 'pso', 'QL01p013664' => 'qlo', 'QL01p036598' => 'qlo', 'QL05p072984' => 'qlo', 'QL08p005768' => 'qlo', 'QL08p032743' => 'qlo', 'QL93p0073_0439' => 'qlo', 'QL93p0073_0444' => 'qlo', 'RcHm_v2.0_Chr5g0002851' => 'rch', 'RcHm_v2.0_Chr5g0055201' => 'rch', 'RcHm_v2.0_Chr5g0061191' => 'rch', 'RcHm_v2.0_Chr7g0203231' => 'rch', 'Rhsim01G0208100' => 'rsi', 'Rhsim01G0208200' => 'rsi', 'Rhsim02G0106500' => 'rsi', 'Rhsim03G0107900' => 'rsi', 'Rhsim06G0163400' => 'rsi', 'Rhsim13G0105200' => 'rsi', 'Sabra04G0006300' => 'sbr', 'Sabra04G0127000' => 'sbr', 'Sabra08G0148700' => 'sbr', 'Sabra09G0117400' => 'sbr', 'SalBow1G3326' => 'sbo', 'SalBow3G3228' => 'sbo', 'SalBow6G1634' => 'sbo', 'SalBow6G3603' => 'sbo', 'SalBow6G5266' => 'sbo', 'SalBow7G2265' => 'sbo', 'SalBow8G0850' => 'sbo', 'SalBow8G2592' => 'sbo', 'Sc05g0009240' => 'sci', 'Sc12g0002300' => 'sci', 'Sc21g0000100' => 'sci', 'Sc21g0004720' => 'sci', 'Sed0002949' => 'sed', 'Sed0004114' => 'sed', 'Sed0004306' => 'sed', 'Sed0006172' => 'sed', 'Sed0008413' => 'sed', 'Sed0013809' => 'sed', 'Sed0019556' => 'sed', 'SEGI_03570' => 'sgi', 'SEGI_07859' => 'sgi', 'SEGI_15042' => 'sgi', 'SEGI_16263' => 'sgi', 'SEGI_16552' => 'sgi', 'SEGI_24331' => 'sgi', 'SEGI_27316' => 'sgi', 'SEGI_29521' => 'sgi', 'SEGI_41342' => 'sgi', 'SGA_v2.0_scaffold27G11617' => 'sas', 'SGA_v2.0_scaffold316G48428' => 'sas', 'SGA_v2.0_scaffold49G18261' => 'sas', 'SGA_v2.0_scaffold7G03831' => 'sas', 'SGA_v2.0_scaffold93G28359' => 'sas', 'SHI02210' => 'shi', 'SHI06028' => 'shi', 'SHI06321' => 'shi', 'SMO111G0012' => 'smo', 'SMO228G0080' => 'smo', 'SMO356G0756' => 'smo', 'Solyc02g080620.3' => 'sly', 'Solyc06g074530.1' => 'sly', 'Solyc11g066890.1' => 'sly', 'Solyc11g072520.3' => 'sly', 'Sopen02g025330' => 'spe', 'Sopen06g031000' => 'spe', 'Sopen09g008240' => 'spe', 'Sopen09g025210' => 'spe', 'Sopen11g026600' => 'spe', 'Sopen11g030170' => 'spe', 'Sp1g10420' => 'spa', 'Sp3g06570' => 'spa', 'Sp4g10660' => 'spa', 'Sp5g16460' => 'spa', 'Sp6g22710' => 'spa', 'TAR365G0112' => 'tar', 'TAR369G0717' => 'tar', 'TAR374G0976' => 'tar', 'TAR623G1128' => 'tar', 'TAR626G1937' => 'tar', 'TAR627G0123' => 'tar', 'TAR628G0305' => 'tar', 'TAR636G1176' => 'tar', 'TAR636G2442' => 'tar', 'THA.LOC104800556' => 'tha', 'THA.LOC104809501' => 'tha', 'THA.LOC104815126' => 'tha', 'THA.LOC104815732' => 'tha', 'THA.LOC104823528' => 'tha', 'Thecc.02G365600' => 'tca', 'Thecc.06G222300' => 'tca', 'Thecc.09G261800' => 'tca', 'Thecc.09G291400' => 'tca', 'Thhalv10003028m.g' => 'esa', 'Thhalv10007886m.g' => 'esa', 'Thhalv10016085m.g' => 'esa', 'Thhalv10016681m.g' => 'esa', 'Thhalv10020951m.g' => 'esa', 'TPR.G15598' => 'tpr', 'TPR.G29305' => 'tpr', 'TPR.G32395' => 'tpr', 'TPR.G36998' => 'tpr', 'TPR.G4227' => 'tpr', 'TWI18G1433' => 'twi', 'TWI31G0755' => 'twi', 'TWI38G0912' => 'twi', 'TWI75G1097' => 'twi', 'TWI75G1619' => 'twi', 'TWI79G1336' => 'twi', 'unitig_0.g943' => 'ugi', 'unitig_0.g944' => 'ugi', 'unitig_22.g6646' => 'ugi', 'unitig_37.g12681' => 'ugi', 'unitig_8.g3290' => 'ugi', 'vmacro03278' => 'vma', 'vmacro12197' => 'vma', 'vmacro14478' => 'vma', 'vmacro15787' => 'vma', 'vmacro15789' => 'vma', 'vmacro15790' => 'vma', 'vmacro15806' => 'vma', 'vmacro22907' => 'vma', 'vmacro22908' => 'vma', 'vmacro22909' => 'vma', 'vmacro23108' => 'vma', 'VMungo0540G0540' => 'vmu', 'VMungo0540G2468' => 'vmu', 'VMungo1080G0390' => 'vmu', 'VMungo1080G1165' => 'vmu', 'VMungo1127G0170' => 'vmu', 'VMungo1127G2099' => 'vmu', 'VMungo1215G3013' => 'vmu', 'Zm00001eb013110' => 'zma', 'Zm00001eb084260' => 'zma', 'Zm00001eb096110' => 'zma', 'Zm00001eb217510' => 'zma', 'Zm00001eb322550' => 'zma', 'Zm00001eb390770' => 'zma', 'Zm00001eb397170' => 'zma', 'Zm00001eb404610' => 'zma', 'Zm00001eb421790' => 'zma' ) $gf_id = 'HOM05D000911' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000911' ) $data_identifier = 'HOM05D000911' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 16, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 5, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 6, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 8, 'nnu' => (int) 16, 'oeu' => (int) 8, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 5, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 16, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421790' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000911', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27780' => 'bna', 'A03p35380' => 'bna', 'A04p21160' => 'bna', 'A05p40570' => 'bna', 'A06p26900' => 'bna', 'A08p33230' => 'bna', 'A09p65960' => 'bna', 'A10p18290' => 'bna', 'Aa31LG1G12990' => 'aar', 'Aa31LG1G2980' => 'aar', 'Aa31LG4G14320' => 'aar', 'Aa31LG7G11800' => 'aar', 'Aa31sc36G50' => 'aar', 'Aa31sc36G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3721' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5459' => 'aag', 'Actinidia03028' => 'ach', 'Actinidia03753' => 'ach', 'Actinidia04187' => 'ach', 'Actinidia05509' => 'ach', 'Actinidia24180' => 'ach', 'Actinidia26906' => 'ach', 'Actinidia37097' => 'ach', 'Actinidia38249' => 'ach', 'Ah.01g003470' => 'amhyb', 'Ah.01g004580' => 'amhyb', 'Ah.01g014850' => 'amhyb', 'Ah.01g016830' => 'amhyb', 'Ah.14g088000' => 'amhyb', 'AL1G22980' => 'aly', 'AL3G18990' => 'aly', 'AL4G22440' => 'aly', 'AL4G33180' => 'aly', 'AL5G22920' => 'aly', 'AL6G33660' => 'aly', 'AL8G20720' => 'aly', 'Aqoxy1G00935' => 'aox', 'Aqoxy1G02094' => 'aox', 'Aqoxy2G01239' => 'aox', 'Aqoxy4G01870' => 'aox', 'Aqoxy7G00450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.36ZVTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71EM27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5D6C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH3WRE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3NCM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RIM768' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YB5YRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z36GDV' => 'arhy', 'AT1G08250' => 'ath', 'AT1G11790' => 'ath', 'AT2G27820' => 'ath', 'AT3G07630' => 'ath', 'AT3G44720' => 'ath', 'AT5G22630' => 'ath', 'ATR0693G304' => 'atr', 'ATR0794G109' => 'atr', 'ATR0820G120' => 'atr', 'ATR1159G064' => 'atr', 'Atru.chr10.2239' => 'acertr', 'Atru.chr3.3371' => 'acertr', 'Atru.chr6.3202' => 'acertr', 'AUR62006499' => 'cqu', 'AUR62012718' => 'cqu', 'AUR62021938' => 'cqu', 'AUR62023932' => 'cqu', 'AUR62025034' => 'cqu', 'AUR62025035' => 'cqu', 'AUR62038307' => 'cqu', 'AUR62043466' => 'cqu', 'BcaB02g10748' => 'bca', 'BcaB03g13231' => 'bca', 'BcaB03g14689' => 'bca', 'BcaB05g22716' => 'bca', 'BcaB06g28172' => 'bca', 'BcaB08g36413' => 'bca', 'BcaC01g02186' => 'bca', 'BcaC01g04272' => 'bca', 'BcaC02g08080' => 'bca', 'BcaC02g08227' => 'bca', 'BcaC03g13901' => 'bca', 'BcaC04g19593' => 'bca', 'BcaC04g20874' => 'bca', 'BcaC05g29557' => 'bca', 'BcaC06g35505' => 'bca', 'BcaC07g41954' => 'bca', 'BcaC07g41955' => 'bca', 'BcaC07g41956' => 'bca', 'BcaC07g42519' => 'bca', 'BcaC07g42520' => 'bca', 'BcaC07g42523' => 'bca', 'BcaC07g42524' => 'bca', 'BcaC07g42525' => 'bca', 'BcaC08g47480' => 'bca', 'BcaC08g47481' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00530' => 'bna', 'BolC2t07178H' => 'bol', 'BolC3t16567H' => 'bol', 'BolC4t27234H' => 'bol', 'BolC5t29728H' => 'bol', 'BolC5t34622H' => 'bol', 'BolC6t40321H' => 'bol', 'BolC7t42028H' => 'bol', 'BolC8t49125H' => 'bol', 'BolC8t52538H' => 'bol', 'BolC8t52539H' => 'bol', 'BolC9t56681H' => 'bol', 'BolC9t58266H' => 'bol', 'BolSC21t60294H' => 'bol', 'BraA02t05670Z' => 'bra', 'BraA03t12716Z' => 'bra', 'BraA04t17685Z' => 'bra', 'BraA05t22788Z' => 'bra', 'BraA06t24032Z' => 'bra', 'BraA06t25625Z' => 'bra', 'BraA07t27930Z' => 'bra', 'BraA08t35242Z' => 'bra', 'BraA09t38609Z' => 'bra', 'BraA10t43905Z' => 'bra', 'C02p11060' => 'bna', 'C03p42990' => 'bna', 'C03p67310' => 'bna', 'C04p56990' => 'bna', 'C04p58660' => 'bna', 'C05p09890' => 'bna', 'C05p59680' => 'bna', 'C06p19830' => 'bna', 'C06p53040' => 'bna', 'C07p15230' => 'bna', 'C08p50070' => 'bna', 'C08p50090' => 'bna', 'C09p38330' => 'bna', 'C09p53940' => 'bna', 'CAN.G1014.1' => 'can', 'CAN.G644.30' => 'can', 'CAN.G84.47' => 'can', 'CAN.G919.8' => 'can', 'CANSAT54G0113' => 'cansat', 'CANSAT54G1286' => 'cansat', 'CANSAT64G1020' => 'cansat', 'CARHR008080' => 'chi', 'CARHR008090' => 'chi', 'CARHR012130' => 'chi', 'CARHR038390' => 'chi', 'CARHR082330' => 'chi', 'CARHR120520' => 'chi', 'CARHR151470' => 'chi', 'CARHR190950' => 'chi', 'Carub.0001s0760' => 'cru', 'Carub.0001s1146' => 'cru', 'Carub.0003s0721' => 'cru', 'Carub.0004s0858' => 'cru', 'Carub.0005s1040' => 'cru', 'Carub.0006s2035' => 'cru', 'Carub.0015s0005' => 'cru', 'Ca_01607_v3' => 'car', 'Ca_01677_v3' => 'car', 'Ca_06087_v3' => 'car', 'Ca_19238_v3' => 'car', 'Ca_19373_v3' => 'car', 'Ca_21079_v3' => 'car', 'CBR_g54016' => 'cbr', 'CBR_g54018' => 'cbr', 'CBR_g54020' => 'cbr', 'Cc01_g09780' => 'ccan', 'Cc01_g11680' => 'ccan', 'Cc02_g15610' => 'ccan', 'Cc05_g04350' => 'ccan', 'Cc09_g01580' => 'ccan', 'CDE01G0795' => 'cde', 'CDE02G2024' => 'cde', 'CDE02G2260' => 'cde', 'CDE02G4561' => 'cde', 'CDE05G2733' => 'cde', 'CDE05G3422' => 'cde', 'CDE06G2003' => 'cde', 'CDE08G0576' => 'cde', 'CDE09G0048' => 'cde', 'CDE11G0805' => 'cde', 'Cfa003644' => 'cfa', 'Cfa006290' => 'cfa', 'Cfa010080' => 'cfa', 'Cfa011376' => 'cfa', 'Cfa011576' => 'cfa', 'Cfa011577' => 'cfa', 'Cfa014389' => 'cfa', 'Ciclev10006044m.g' => 'ccl', 'Ciclev10006954m.g' => 'ccl', 'Ciclev10015131m.g' => 'ccl', 'Ciclev10015580m.g' => 'ccl', 'Ciclev10028359m.g' => 'ccl', 'Ciclev10028573m.g' => 'ccl', 'CiPaw.03G159300' => 'cil', 'CiPaw.04G115100' => 'cil', 'CiPaw.09G092800' => 'cil', 'CiPaw.10G071800' => 'cil', 'CiPaw.13G105800' => 'cil', 'CiPaw.13G141000' => 'cil', 'CiPaw.14G103400' => 'cil', 'ClCG01G012700' => 'cla', 'ClCG01G012720' => 'cla', 'ClCG01G021920' => 'cla', 'ClCG02G008870' => 'cla', 'ClCG02G020840' => 'cla', 'ClCG02G021930' => 'cla', 'COL.COLO4_19302' => 'col', 'COL.COLO4_25262' => 'col', 'COL.COLO4_31788' => 'col', 'Cpa.g.c34684' => 'cpa', 'Cpa.g.c36520.1' => 'cpa', 'Cpa.g.c45626' => 'cpa', 'Cpa.g.sc121.17' => 'cpa', 'Cpa.g.sc13.22' => 'cpa', 'Cpa.g.sc87.88' => 'cpa', 'Cre06.g261800' => 'cre', 'CsaV3_1G014500' => 'csa', 'CsaV3_1G014510' => 'csa', 'CsaV3_2G034880' => 'csa', 'CsaV3_6G014760' => 'csa', 'CsaV3_6G021500' => 'csa', 'CsaV3_6G048980' => 'csa', 'CSS0002511' => 'camsi', 'CSS0007556' => 'camsi', 'CSS0008532' => 'camsi', 'CSS0009709' => 'camsi', 'CSS0010486' => 'camsi', 'CSS0016768' => 'camsi', 'CSS0023512' => 'camsi', 'CSS0025341' => 'camsi', 'CSS0027999' => 'camsi', 'CSS0028944' => 'camsi', 'CSS0032292' => 'camsi', 'CSS0032464' => 'camsi', 'CSS0037153' => 'camsi', 'CSS0039256' => 'camsi', 'CSS0048392' => 'camsi', 'CSS0050458' => 'camsi', 'DCAR_004224' => 'dca', 'DCAR_006147' => 'dca', 'DCAR_006465' => 'dca', 'DCAR_008159' => 'dca', 'DCAR_012164' => 'dca', 'DCAR_019764' => 'dca', 'Dinv05418' => 'din', 'Dinv10839' => 'din', 'Dinv12521' => 'din', 'Dinv13900' => 'din', 'Dinv29426' => 'din', 'Duzib150G0263' => 'dzi', 'Duzib168G1178' => 'dzi', 'Duzib168G1924' => 'dzi', 'Duzib170G0299' => 'dzi', 'Duzib170G0813' => 'dzi', 'Duzib235G1128' => 'dzi', 'Duzib248G1060' => 'dzi', 'ECA232G1910' => 'eca', 'ECA233G4621' => 'eca', 'ECA238G1216' => 'eca', 'ECA238G1784' => 'eca', 'ECA248G1242' => 'eca', 'EL10Ac8g20071' => 'bvu', 'EL10Ac9g21086' => 'bvu', 'EL10Ac9g22407' => 'bvu', 'EL10Ac9g22412' => 'bvu', 'Eucgr.A01119' => 'egr', 'Eucgr.E04043' => 'egr', 'Eucgr.J00428' => 'egr', 'Eucgr.J00958' => 'egr', 'FAN11G3091' => 'fan', 'FAN11G3651' => 'fan', 'FAN16G2566' => 'fan', 'FAN21G3155' => 'fan', 'FAN21G3400' => 'fan', 'FAN21G3543' => 'fan', 'FAN25G0234' => 'fan', 'FAN25G1422' => 'fan', 'FAN25G3392' => 'fan', 'FvH4_3g01940' => 'fve', 'FvH4_3g29870' => 'fve', 'FvH4_3g33680' => 'fve', 'Glyma.09G004200' => 'gma', 'Glyma.11G151288' => 'gma', 'Glyma.11G189100' => 'gma', 'Glyma.12G072500' => 'gma', 'Glyma.12G085500' => 'gma', 'Glyma.12G181800' => 'gma', 'Glyma.12G193000' => 'gma', 'Glyma.13G309300' => 'gma', 'Glyma.13G319000' => 'gma', 'Glyma.17G012600' => 'gma', 'Gohir.A06G148600' => 'ghi', 'Gohir.A07G115800' => 'ghi', 'Gohir.A08G003600' => 'ghi', 'Gohir.A09G093300' => 'ghi', 'Gohir.A09G105400' => 'ghi', 'Gohir.A09G105500' => 'ghi', 'Gohir.D06G154600' => 'ghi', 'Gohir.D07G120200' => 'ghi', 'Gohir.D08G013900' => 'ghi', 'Gohir.D09G093100' => 'ghi', 'Gohir.D09G102200' => 'ghi', 'Gohir.D09G102300' => 'ghi', 'Gorai.001G129400' => 'gra', 'Gorai.004G008200' => 'gra', 'Gorai.006G109800' => 'gra', 'Gorai.006G119500' => 'gra', 'Gorai.006G121300' => 'gra', 'Gorai.010G180700' => 'gra', 'GSVIVG01012716001' => 'vvi', 'GSVIVG01025118001' => 'vvi', 'GSVIVG01030439001' => 'vvi', 'GSVIVG01031397001' => 'vvi', 'HanXRQChr01g0004201' => 'han', 'HanXRQChr02g0054941' => 'han', 'HanXRQChr05g0141811' => 'han', 'HanXRQChr07g0197751' => 'han', 'HanXRQChr11g0346691' => 'han', 'HanXRQChr13g0396971' => 'han', 'HanXRQChr14g0432951' => 'han', 'HanXRQChr14g0452001' => 'han', 'HanXRQChr15g0496681' => 'han', 'HanXRQChr17g0557491' => 'han', 'HanXRQChr17g0557501' => 'han', 'Haze_06809' => 'cav', 'Haze_12852' => 'cav', 'Haze_15850' => 'cav', 'Haze_23446' => 'cav', 'Haze_23942' => 'cav', 'Haze_23943' => 'cav', 'Hma1.2p1_0091F.1_g046450' => 'hma', 'Hma1.2p1_0128F.1_g059910' => 'hma', 'Hma1.2p1_0249F.1_g102260' => 'hma', 'Hma1.2p1_0453F.1_g156190' => 'hma', 'Hma1.2p1_0695F.1_g204380' => 'hma', 'Hma1.2p1_0749F.1_g212650' => 'hma', 'Hma1.2p1_2156F.1_g315420' => 'hma', 'Hma1.2p1_2686F.1_g326940' => 'hma', 'HPP92_006428' => 'vpl', 'HPP92_012069' => 'vpl', 'HPP92_014129' => 'vpl', 'HPP92_014133' => 'vpl', 'HPP92_017315' => 'vpl', 'HPP92_026445' => 'vpl', 'HPP92_026446' => 'vpl', 'Hund00774' => 'sun', 'Hund07682' => 'sun', 'Hund21413' => 'sun', 'Hund23462' => 'sun', 'Hund23463' => 'sun', 'Lalb_Chr03g0027911' => 'lal', 'Lalb_Chr13g0304271' => 'lal', 'Lalb_Chr19g0137471' => 'lal', 'Lalb_Chr22g0350651' => 'lal', 'Lalb_Chr24g0395151' => 'lal', 'Lj1A1231T40' => 'lonja', 'Lj1A221T48' => 'lonja', 'Lj1C924T12' => 'lonja', 'Lj2C993G6' => 'lonja', 'Lj3g0005790' => 'lja', 'Lj3g0015432' => 'lja', 'Lj3g0017722' => 'lja', 'Lj3g0018497' => 'lja', 'Lj4g0025071' => 'lja', 'Lsat_1_v5_gn_1_129680' => 'lsa', 'Lsat_1_v5_gn_2_25321' => 'lsa', 'Lsat_1_v5_gn_2_95461' => 'lsa', 'Lsat_1_v5_gn_4_159620' => 'lsa', 'Lsat_1_v5_gn_6_41301' => 'lsa', 'Lsat_1_v5_gn_6_74660' => 'lsa', 'Lsat_1_v5_gn_7_11520' => 'lsa', 'Lsat_1_v5_gn_9_67680' => 'lsa', 'Manes.04G008300' => 'mes', 'Manes.04G008400' => 'mes', 'Manes.04G026500' => 'mes', 'Manes.10G135300' => 'mes', 'Manes.11G157300' => 'mes', 'Manes.12G074000' => 'mes', 'Manes.16G006200' => 'mes', 'Manes.17G026400' => 'mes', 'Mapoly0024s0086' => 'mpo', 'Mapoly0024s0087' => 'mpo', 'Mapoly0071s0057' => 'mpo', 'Mapoly0204s0012' => 'mpo', 'MBI04_g37681_MAGBIO' => 'mbi', 'MBI05_g17779_MAGBIO' => 'mbi', 'MBI12_g31184_MAGBIO' => 'mbi', 'MBI17_g11083_MAGBIO' => 'mbi', 'MBI18_g03883_MAGBIO' => 'mbi', 'MBI18_g28940_MAGBIO' => 'mbi', 'MCO01G690' => 'mco', 'MD03G1109900' => 'mdo', 'MD03G1134800' => 'mdo', 'MD05G1348000' => 'mdo', 'MD10G1322400' => 'mdo', 'MD11G1123300' => 'mdo', 'MD11G1157600' => 'mdo', 'Medtr2g084875' => 'mtr', 'Medtr2g088130' => 'mtr', 'Medtr4g055310' => 'mtr', 'Medtr4g061070' => 'mtr', 'Medtr4g132250' => 'mtr', 'MELO3C004795.2' => 'cme', 'MELO3C004797.2' => 'cme', 'MELO3C007396.2' => 'cme', 'MELO3C019277.2' => 'cme', 'MELO3C021449.2' => 'cme', 'MELO3C025736.2' => 'cme', 'Migut.D02175' => 'egut', 'Migut.H01573' => 'egut', 'Migut.M01327' => 'egut', 'Migut.N02513' => 'egut', 'MSTRG.14638' => 'ama', 'MSTRG.18632' => 'ama', 'MSTRG.7203' => 'ama', 'Nitab4.5_0000533g0140' => 'nta', 'Nitab4.5_0000888g0150' => 'nta', 'Nitab4.5_0001453g0040' => 'nta', 'Nitab4.5_0002827g0090' => 'nta', 'Nitab4.5_0003082g0040' => 'nta', 'Nitab4.5_0007799g0040' => 'nta', 'Nitab4.5_0008983g0010' => 'nta', 'Nitab4.5_0009017g0020' => 'nta', 'Nn1g02132' => 'nnu', 'Nn1g03492' => 'nnu', 'Nn1g03493' => 'nnu', 'Nn1g03494' => 'nnu', 'Nn1g07164' => 'nnu', 'Nn1g07291' => 'nnu', 'Nn2g10655' => 'nnu', 'Nn2g11652' => 'nnu', 'Nn2g14008' => 'nnu', 'Nn3g17476' => 'nnu', 'Nn3g17477' => 'nnu', 'Nn4g22370' => 'nnu', 'Nn4g25255' => 'nnu', 'Nn5g27755' => 'nnu', 'Nn6g34260' => 'nnu', 'Nn6g35041' => 'nnu', 'Oeu005924.1' => 'oeu', 'Oeu008383.1' => 'oeu', 'Oeu014928.1' => 'oeu', 'Oeu019889.1' => 'oeu', 'Oeu022271.1' => 'oeu', 'Oeu025271.1' => 'oeu', 'Oeu036302.1' => 'oeu', 'Oeu044100.1' => 'oeu', 'Os01g0528300' => 'osa', 'Os03g0286200' => 'osa', 'Os04g0406600' => 'osa', 'Os07g0512000' => 'osa', 'Os07g0694600' => 'osa', 'Os08g0411000' => 'osa', 'Os09g0565700' => 'osa', 'Os09g0566050' => 'osa', 'Os10g0523700' => 'osa', 'Peaxi162Scf00002g00514' => 'pax', 'Peaxi162Scf00047g01817' => 'pax', 'Peaxi162Scf00114g00001' => 'pax', 'Peaxi162Scf00147g00613' => 'pax', 'Peaxi162Scf00389g00425' => 'pax', 'PGR042G1139' => 'pgr', 'PGR042G3273' => 'pgr', 'PGR102G2180' => 'pgr', 'PGR119G0234' => 'pgr', 'PGR119G0668' => 'pgr', 'PGSC0003DMG400007122' => 'stu', 'PGSC0003DMG400016478' => 'stu', 'PGSC0003DMG400025374' => 'stu', 'PGSC0003DMG400026536' => 'stu', 'Phvul.003G079600' => 'pvu', 'Phvul.005G115600' => 'pvu', 'Phvul.005G127100' => 'pvu', 'Phvul.006G149500' => 'pvu', 'Phvul.006G149600' => 'pvu', 'Phvul.011G071800' => 'pvu', 'Phvul.011G090400' => 'pvu', 'Potri.004G013400' => 'ptr', 'Potri.004G188100' => 'ptr', 'Potri.008G195500' => 'ptr', 'Potri.009G148800' => 'ptr', 'Potri.011G004700' => 'ptr', 'Pp3c17_22810' => 'ppa', 'Pp3c18_4480' => 'ppa', 'Pp3c19_13030' => 'ppa', 'Pp3c1_33620' => 'ppa', 'Pp3c2_9380' => 'ppa', 'PRCOL_00001023' => 'pco', 'Prupe.3G216300' => 'ppe', 'Prupe.4G019500' => 'ppe', 'Prupe.6G092500' => 'ppe', 'Prupe.6G119200' => 'ppe', 'Psat0s1945g0080' => 'psa', 'Psat0s4167g0040' => 'psa', 'Psat1g185800' => 'psa', 'Psat4g006440' => 'psa', 'Psat4g006480' => 'psa', 'Psat4g168120' => 'psa', 'Psat5g255680' => 'psa', 'Psat5g261760' => 'psa', 'Psat7g222120' => 'psa', 'PSO063G7252' => 'pso', 'PSO170G4778' => 'pso', 'PSO210G2249' => 'pso', 'PSO339G2411' => 'pso', 'PSO339G2457' => 'pso', 'PSO339G2854' => 'pso', 'PSO339G4288' => 'pso', 'PSO339G4615' => 'pso', 'PSO384G2796' => 'pso', 'PSO384G2940' => 'pso', 'PSO384G4227' => 'pso', 'PSO478G1425' => 'pso', 'PSO541G3863' => 'pso', 'PSO675G0507' => 'pso', 'PSO782G0338' => 'pso', 'PSO832G0644' => 'pso', 'QL01p013664' => 'qlo', 'QL01p036598' => 'qlo', 'QL05p072984' => 'qlo', 'QL08p005768' => 'qlo', 'QL08p032743' => 'qlo', 'QL93p0073_0439' => 'qlo', 'QL93p0073_0444' => 'qlo', 'RcHm_v2.0_Chr5g0002851' => 'rch', 'RcHm_v2.0_Chr5g0055201' => 'rch', 'RcHm_v2.0_Chr5g0061191' => 'rch', 'RcHm_v2.0_Chr7g0203231' => 'rch', 'Rhsim01G0208100' => 'rsi', 'Rhsim01G0208200' => 'rsi', 'Rhsim02G0106500' => 'rsi', 'Rhsim03G0107900' => 'rsi', 'Rhsim06G0163400' => 'rsi', 'Rhsim13G0105200' => 'rsi', 'Sabra04G0006300' => 'sbr', 'Sabra04G0127000' => 'sbr', 'Sabra08G0148700' => 'sbr', 'Sabra09G0117400' => 'sbr', 'SalBow1G3326' => 'sbo', 'SalBow3G3228' => 'sbo', 'SalBow6G1634' => 'sbo', 'SalBow6G3603' => 'sbo', 'SalBow6G5266' => 'sbo', 'SalBow7G2265' => 'sbo', 'SalBow8G0850' => 'sbo', 'SalBow8G2592' => 'sbo', 'Sc05g0009240' => 'sci', 'Sc12g0002300' => 'sci', 'Sc21g0000100' => 'sci', 'Sc21g0004720' => 'sci', 'Sed0002949' => 'sed', 'Sed0004114' => 'sed', 'Sed0004306' => 'sed', 'Sed0006172' => 'sed', 'Sed0008413' => 'sed', 'Sed0013809' => 'sed', 'Sed0019556' => 'sed', 'SEGI_03570' => 'sgi', 'SEGI_07859' => 'sgi', 'SEGI_15042' => 'sgi', 'SEGI_16263' => 'sgi', 'SEGI_16552' => 'sgi', 'SEGI_24331' => 'sgi', 'SEGI_27316' => 'sgi', 'SEGI_29521' => 'sgi', 'SEGI_41342' => 'sgi', 'SGA_v2.0_scaffold27G11617' => 'sas', 'SGA_v2.0_scaffold316G48428' => 'sas', 'SGA_v2.0_scaffold49G18261' => 'sas', 'SGA_v2.0_scaffold7G03831' => 'sas', 'SGA_v2.0_scaffold93G28359' => 'sas', 'SHI02210' => 'shi', 'SHI06028' => 'shi', 'SHI06321' => 'shi', 'SMO111G0012' => 'smo', 'SMO228G0080' => 'smo', 'SMO356G0756' => 'smo', 'Solyc02g080620.3' => 'sly', 'Solyc06g074530.1' => 'sly', 'Solyc11g066890.1' => 'sly', 'Solyc11g072520.3' => 'sly', 'Sopen02g025330' => 'spe', 'Sopen06g031000' => 'spe', 'Sopen09g008240' => 'spe', 'Sopen09g025210' => 'spe', 'Sopen11g026600' => 'spe', 'Sopen11g030170' => 'spe', 'Sp1g10420' => 'spa', 'Sp3g06570' => 'spa', 'Sp4g10660' => 'spa', 'Sp5g16460' => 'spa', 'Sp6g22710' => 'spa', 'TAR365G0112' => 'tar', 'TAR369G0717' => 'tar', 'TAR374G0976' => 'tar', 'TAR623G1128' => 'tar', 'TAR626G1937' => 'tar', 'TAR627G0123' => 'tar', 'TAR628G0305' => 'tar', 'TAR636G1176' => 'tar', 'TAR636G2442' => 'tar', 'THA.LOC104800556' => 'tha', 'THA.LOC104809501' => 'tha', 'THA.LOC104815126' => 'tha', 'THA.LOC104815732' => 'tha', 'THA.LOC104823528' => 'tha', 'Thecc.02G365600' => 'tca', 'Thecc.06G222300' => 'tca', 'Thecc.09G261800' => 'tca', 'Thecc.09G291400' => 'tca', 'Thhalv10003028m.g' => 'esa', 'Thhalv10007886m.g' => 'esa', 'Thhalv10016085m.g' => 'esa', 'Thhalv10016681m.g' => 'esa', 'Thhalv10020951m.g' => 'esa', 'TPR.G15598' => 'tpr', 'TPR.G29305' => 'tpr', 'TPR.G32395' => 'tpr', 'TPR.G36998' => 'tpr', 'TPR.G4227' => 'tpr', 'TWI18G1433' => 'twi', 'TWI31G0755' => 'twi', 'TWI38G0912' => 'twi', 'TWI75G1097' => 'twi', 'TWI75G1619' => 'twi', 'TWI79G1336' => 'twi', 'unitig_0.g943' => 'ugi', 'unitig_0.g944' => 'ugi', 'unitig_22.g6646' => 'ugi', 'unitig_37.g12681' => 'ugi', 'unitig_8.g3290' => 'ugi', 'vmacro03278' => 'vma', 'vmacro12197' => 'vma', 'vmacro14478' => 'vma', 'vmacro15787' => 'vma', 'vmacro15789' => 'vma', 'vmacro15790' => 'vma', 'vmacro15806' => 'vma', 'vmacro22907' => 'vma', 'vmacro22908' => 'vma', 'vmacro22909' => 'vma', 'vmacro23108' => 'vma', 'VMungo0540G0540' => 'vmu', 'VMungo0540G2468' => 'vmu', 'VMungo1080G0390' => 'vmu', 'VMungo1080G1165' => 'vmu', 'VMungo1127G0170' => 'vmu', 'VMungo1127G2099' => 'vmu', 'VMungo1215G3013' => 'vmu', 'Zm00001eb013110' => 'zma', 'Zm00001eb084260' => 'zma', 'Zm00001eb096110' => 'zma', 'Zm00001eb217510' => 'zma', 'Zm00001eb322550' => 'zma', 'Zm00001eb390770' => 'zma', 'Zm00001eb397170' => 'zma', 'Zm00001eb404610' => 'zma', 'Zm00001eb421790' => 'zma' ), 'gf_id' => 'HOM05D000911', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000911' ), 'data_identifier' => 'HOM05D000911', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000911', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27780' => 'bna', 'A03p35380' => 'bna', 'A04p21160' => 'bna', 'A05p40570' => 'bna', 'A06p26900' => 'bna', 'A08p33230' => 'bna', 'A09p65960' => 'bna', 'A10p18290' => 'bna', 'Aa31LG1G12990' => 'aar', 'Aa31LG1G2980' => 'aar', 'Aa31LG4G14320' => 'aar', 'Aa31LG7G11800' => 'aar', 'Aa31sc36G50' => 'aar', 'Aa31sc36G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3721' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5459' => 'aag', 'Actinidia03028' => 'ach', 'Actinidia03753' => 'ach', 'Actinidia04187' => 'ach', 'Actinidia05509' => 'ach', 'Actinidia24180' => 'ach', 'Actinidia26906' => 'ach', 'Actinidia37097' => 'ach', 'Actinidia38249' => 'ach', 'Ah.01g003470' => 'amhyb', 'Ah.01g004580' => 'amhyb', 'Ah.01g014850' => 'amhyb', 'Ah.01g016830' => 'amhyb', 'Ah.14g088000' => 'amhyb', 'AL1G22980' => 'aly', 'AL3G18990' => 'aly', 'AL4G22440' => 'aly', 'AL4G33180' => 'aly', 'AL5G22920' => 'aly', 'AL6G33660' => 'aly', 'AL8G20720' => 'aly', 'Aqoxy1G00935' => 'aox', 'Aqoxy1G02094' => 'aox', 'Aqoxy2G01239' => 'aox', 'Aqoxy4G01870' => 'aox', 'Aqoxy7G00450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.36ZVTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71EM27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5D6C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH3WRE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3NCM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RIM768' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YB5YRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z36GDV' => 'arhy', 'AT1G08250' => 'ath', 'AT1G11790' => 'ath', 'AT2G27820' => 'ath', 'AT3G07630' => 'ath', 'AT3G44720' => 'ath', 'AT5G22630' => 'ath', 'ATR0693G304' => 'atr', 'ATR0794G109' => 'atr', 'ATR0820G120' => 'atr', 'ATR1159G064' => 'atr', 'Atru.chr10.2239' => 'acertr', 'Atru.chr3.3371' => 'acertr', 'Atru.chr6.3202' => 'acertr', 'AUR62006499' => 'cqu', 'AUR62012718' => 'cqu', 'AUR62021938' => 'cqu', 'AUR62023932' => 'cqu', 'AUR62025034' => 'cqu', 'AUR62025035' => 'cqu', 'AUR62038307' => 'cqu', 'AUR62043466' => 'cqu', 'BcaB02g10748' => 'bca', 'BcaB03g13231' => 'bca', 'BcaB03g14689' => 'bca', 'BcaB05g22716' => 'bca', 'BcaB06g28172' => 'bca', 'BcaB08g36413' => 'bca', 'BcaC01g02186' => 'bca', 'BcaC01g04272' => 'bca', 'BcaC02g08080' => 'bca', 'BcaC02g08227' => 'bca', 'BcaC03g13901' => 'bca', 'BcaC04g19593' => 'bca', 'BcaC04g20874' => 'bca', 'BcaC05g29557' => 'bca', 'BcaC06g35505' => 'bca', 'BcaC07g41954' => 'bca', 'BcaC07g41955' => 'bca', 'BcaC07g41956' => 'bca', 'BcaC07g42519' => 'bca', 'BcaC07g42520' => 'bca', 'BcaC07g42523' => 'bca', 'BcaC07g42524' => 'bca', 'BcaC07g42525' => 'bca', 'BcaC08g47480' => 'bca', 'BcaC08g47481' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00530' => 'bna', 'BolC2t07178H' => 'bol', 'BolC3t16567H' => 'bol', 'BolC4t27234H' => 'bol', 'BolC5t29728H' => 'bol', 'BolC5t34622H' => 'bol', 'BolC6t40321H' => 'bol', 'BolC7t42028H' => 'bol', 'BolC8t49125H' => 'bol', 'BolC8t52538H' => 'bol', 'BolC8t52539H' => 'bol', 'BolC9t56681H' => 'bol', 'BolC9t58266H' => 'bol', 'BolSC21t60294H' => 'bol', 'BraA02t05670Z' => 'bra', 'BraA03t12716Z' => 'bra', 'BraA04t17685Z' => 'bra', 'BraA05t22788Z' => 'bra', 'BraA06t24032Z' => 'bra', 'BraA06t25625Z' => 'bra', 'BraA07t27930Z' => 'bra', 'BraA08t35242Z' => 'bra', 'BraA09t38609Z' => 'bra', 'BraA10t43905Z' => 'bra', 'C02p11060' => 'bna', 'C03p42990' => 'bna', 'C03p67310' => 'bna', 'C04p56990' => 'bna', 'C04p58660' => 'bna', 'C05p09890' => 'bna', 'C05p59680' => 'bna', 'C06p19830' => 'bna', 'C06p53040' => 'bna', 'C07p15230' => 'bna', 'C08p50070' => 'bna', 'C08p50090' => 'bna', 'C09p38330' => 'bna', 'C09p53940' => 'bna', 'CAN.G1014.1' => 'can', 'CAN.G644.30' => 'can', 'CAN.G84.47' => 'can', 'CAN.G919.8' => 'can', 'CANSAT54G0113' => 'cansat', 'CANSAT54G1286' => 'cansat', 'CANSAT64G1020' => 'cansat', 'CARHR008080' => 'chi', 'CARHR008090' => 'chi', 'CARHR012130' => 'chi', 'CARHR038390' => 'chi', 'CARHR082330' => 'chi', 'CARHR120520' => 'chi', 'CARHR151470' => 'chi', 'CARHR190950' => 'chi', 'Carub.0001s0760' => 'cru', 'Carub.0001s1146' => 'cru', 'Carub.0003s0721' => 'cru', 'Carub.0004s0858' => 'cru', 'Carub.0005s1040' => 'cru', 'Carub.0006s2035' => 'cru', 'Carub.0015s0005' => 'cru', 'Ca_01607_v3' => 'car', 'Ca_01677_v3' => 'car', 'Ca_06087_v3' => 'car', 'Ca_19238_v3' => 'car', 'Ca_19373_v3' => 'car', 'Ca_21079_v3' => 'car', 'CBR_g54016' => 'cbr', 'CBR_g54018' => 'cbr', 'CBR_g54020' => 'cbr', 'Cc01_g09780' => 'ccan', 'Cc01_g11680' => 'ccan', 'Cc02_g15610' => 'ccan', 'Cc05_g04350' => 'ccan', 'Cc09_g01580' => 'ccan', 'CDE01G0795' => 'cde', 'CDE02G2024' => 'cde', 'CDE02G2260' => 'cde', 'CDE02G4561' => 'cde', 'CDE05G2733' => 'cde', 'CDE05G3422' => 'cde', 'CDE06G2003' => 'cde', 'CDE08G0576' => 'cde', 'CDE09G0048' => 'cde', 'CDE11G0805' => 'cde', 'Cfa003644' => 'cfa', 'Cfa006290' => 'cfa', 'Cfa010080' => 'cfa', 'Cfa011376' => 'cfa', 'Cfa011576' => 'cfa', 'Cfa011577' => 'cfa', 'Cfa014389' => 'cfa', 'Ciclev10006044m.g' => 'ccl', 'Ciclev10006954m.g' => 'ccl', 'Ciclev10015131m.g' => 'ccl', 'Ciclev10015580m.g' => 'ccl', 'Ciclev10028359m.g' => 'ccl', 'Ciclev10028573m.g' => 'ccl', 'CiPaw.03G159300' => 'cil', 'CiPaw.04G115100' => 'cil', 'CiPaw.09G092800' => 'cil', 'CiPaw.10G071800' => 'cil', 'CiPaw.13G105800' => 'cil', 'CiPaw.13G141000' => 'cil', 'CiPaw.14G103400' => 'cil', 'ClCG01G012700' => 'cla', 'ClCG01G012720' => 'cla', 'ClCG01G021920' => 'cla', 'ClCG02G008870' => 'cla', 'ClCG02G020840' => 'cla', 'ClCG02G021930' => 'cla', 'COL.COLO4_19302' => 'col', 'COL.COLO4_25262' => 'col', 'COL.COLO4_31788' => 'col', 'Cpa.g.c34684' => 'cpa', 'Cpa.g.c36520.1' => 'cpa', 'Cpa.g.c45626' => 'cpa', 'Cpa.g.sc121.17' => 'cpa', 'Cpa.g.sc13.22' => 'cpa', 'Cpa.g.sc87.88' => 'cpa', 'Cre06.g261800' => 'cre', 'CsaV3_1G014500' => 'csa', 'CsaV3_1G014510' => 'csa', 'CsaV3_2G034880' => 'csa', 'CsaV3_6G014760' => 'csa', 'CsaV3_6G021500' => 'csa', 'CsaV3_6G048980' => 'csa', 'CSS0002511' => 'camsi', 'CSS0007556' => 'camsi', 'CSS0008532' => 'camsi', 'CSS0009709' => 'camsi', 'CSS0010486' => 'camsi', 'CSS0016768' => 'camsi', 'CSS0023512' => 'camsi', 'CSS0025341' => 'camsi', 'CSS0027999' => 'camsi', 'CSS0028944' => 'camsi', 'CSS0032292' => 'camsi', 'CSS0032464' => 'camsi', 'CSS0037153' => 'camsi', 'CSS0039256' => 'camsi', 'CSS0048392' => 'camsi', 'CSS0050458' => 'camsi', 'DCAR_004224' => 'dca', 'DCAR_006147' => 'dca', 'DCAR_006465' => 'dca', 'DCAR_008159' => 'dca', 'DCAR_012164' => 'dca', 'DCAR_019764' => 'dca', 'Dinv05418' => 'din', 'Dinv10839' => 'din', 'Dinv12521' => 'din', 'Dinv13900' => 'din', 'Dinv29426' => 'din', 'Duzib150G0263' => 'dzi', 'Duzib168G1178' => 'dzi', 'Duzib168G1924' => 'dzi', 'Duzib170G0299' => 'dzi', 'Duzib170G0813' => 'dzi', 'Duzib235G1128' => 'dzi', 'Duzib248G1060' => 'dzi', 'ECA232G1910' => 'eca', 'ECA233G4621' => 'eca', 'ECA238G1216' => 'eca', 'ECA238G1784' => 'eca', 'ECA248G1242' => 'eca', 'EL10Ac8g20071' => 'bvu', 'EL10Ac9g21086' => 'bvu', 'EL10Ac9g22407' => 'bvu', 'EL10Ac9g22412' => 'bvu', 'Eucgr.A01119' => 'egr', 'Eucgr.E04043' => 'egr', 'Eucgr.J00428' => 'egr', 'Eucgr.J00958' => 'egr', 'FAN11G3091' => 'fan', 'FAN11G3651' => 'fan', 'FAN16G2566' => 'fan', 'FAN21G3155' => 'fan', 'FAN21G3400' => 'fan', 'FAN21G3543' => 'fan', 'FAN25G0234' => 'fan', 'FAN25G1422' => 'fan', 'FAN25G3392' => 'fan', 'FvH4_3g01940' => 'fve', 'FvH4_3g29870' => 'fve', 'FvH4_3g33680' => 'fve', 'Glyma.09G004200' => 'gma', 'Glyma.11G151288' => 'gma', 'Glyma.11G189100' => 'gma', 'Glyma.12G072500' => 'gma', 'Glyma.12G085500' => 'gma', 'Glyma.12G181800' => 'gma', 'Glyma.12G193000' => 'gma', 'Glyma.13G309300' => 'gma', 'Glyma.13G319000' => 'gma', 'Glyma.17G012600' => 'gma', 'Gohir.A06G148600' => 'ghi', 'Gohir.A07G115800' => 'ghi', 'Gohir.A08G003600' => 'ghi', 'Gohir.A09G093300' => 'ghi', 'Gohir.A09G105400' => 'ghi', 'Gohir.A09G105500' => 'ghi', 'Gohir.D06G154600' => 'ghi', 'Gohir.D07G120200' => 'ghi', 'Gohir.D08G013900' => 'ghi', 'Gohir.D09G093100' => 'ghi', 'Gohir.D09G102200' => 'ghi', 'Gohir.D09G102300' => 'ghi', 'Gorai.001G129400' => 'gra', 'Gorai.004G008200' => 'gra', 'Gorai.006G109800' => 'gra', 'Gorai.006G119500' => 'gra', 'Gorai.006G121300' => 'gra', 'Gorai.010G180700' => 'gra', 'GSVIVG01012716001' => 'vvi', 'GSVIVG01025118001' => 'vvi', 'GSVIVG01030439001' => 'vvi', 'GSVIVG01031397001' => 'vvi', 'HanXRQChr01g0004201' => 'han', 'HanXRQChr02g0054941' => 'han', 'HanXRQChr05g0141811' => 'han', 'HanXRQChr07g0197751' => 'han', 'HanXRQChr11g0346691' => 'han', 'HanXRQChr13g0396971' => 'han', 'HanXRQChr14g0432951' => 'han', 'HanXRQChr14g0452001' => 'han', 'HanXRQChr15g0496681' => 'han', 'HanXRQChr17g0557491' => 'han', 'HanXRQChr17g0557501' => 'han', 'Haze_06809' => 'cav', 'Haze_12852' => 'cav', 'Haze_15850' => 'cav', 'Haze_23446' => 'cav', 'Haze_23942' => 'cav', 'Haze_23943' => 'cav', 'Hma1.2p1_0091F.1_g046450' => 'hma', 'Hma1.2p1_0128F.1_g059910' => 'hma', 'Hma1.2p1_0249F.1_g102260' => 'hma', 'Hma1.2p1_0453F.1_g156190' => 'hma', 'Hma1.2p1_0695F.1_g204380' => 'hma', 'Hma1.2p1_0749F.1_g212650' => 'hma', 'Hma1.2p1_2156F.1_g315420' => 'hma', 'Hma1.2p1_2686F.1_g326940' => 'hma', 'HPP92_006428' => 'vpl', 'HPP92_012069' => 'vpl', 'HPP92_014129' => 'vpl', 'HPP92_014133' => 'vpl', 'HPP92_017315' => 'vpl', 'HPP92_026445' => 'vpl', 'HPP92_026446' => 'vpl', 'Hund00774' => 'sun', 'Hund07682' => 'sun', 'Hund21413' => 'sun', 'Hund23462' => 'sun', 'Hund23463' => 'sun', 'Lalb_Chr03g0027911' => 'lal', 'Lalb_Chr13g0304271' => 'lal', 'Lalb_Chr19g0137471' => 'lal', 'Lalb_Chr22g0350651' => 'lal', 'Lalb_Chr24g0395151' => 'lal', 'Lj1A1231T40' => 'lonja', 'Lj1A221T48' => 'lonja', 'Lj1C924T12' => 'lonja', 'Lj2C993G6' => 'lonja', 'Lj3g0005790' => 'lja', 'Lj3g0015432' => 'lja', 'Lj3g0017722' => 'lja', 'Lj3g0018497' => 'lja', 'Lj4g0025071' => 'lja', 'Lsat_1_v5_gn_1_129680' => 'lsa', 'Lsat_1_v5_gn_2_25321' => 'lsa', 'Lsat_1_v5_gn_2_95461' => 'lsa', 'Lsat_1_v5_gn_4_159620' => 'lsa', 'Lsat_1_v5_gn_6_41301' => 'lsa', 'Lsat_1_v5_gn_6_74660' => 'lsa', 'Lsat_1_v5_gn_7_11520' => 'lsa', 'Lsat_1_v5_gn_9_67680' => 'lsa', 'Manes.04G008300' => 'mes', 'Manes.04G008400' => 'mes', 'Manes.04G026500' => 'mes', 'Manes.10G135300' => 'mes', 'Manes.11G157300' => 'mes', 'Manes.12G074000' => 'mes', 'Manes.16G006200' => 'mes', 'Manes.17G026400' => 'mes', 'Mapoly0024s0086' => 'mpo', 'Mapoly0024s0087' => 'mpo', 'Mapoly0071s0057' => 'mpo', 'Mapoly0204s0012' => 'mpo', 'MBI04_g37681_MAGBIO' => 'mbi', 'MBI05_g17779_MAGBIO' => 'mbi', 'MBI12_g31184_MAGBIO' => 'mbi', 'MBI17_g11083_MAGBIO' => 'mbi', 'MBI18_g03883_MAGBIO' => 'mbi', 'MBI18_g28940_MAGBIO' => 'mbi', 'MCO01G690' => 'mco', 'MD03G1109900' => 'mdo', 'MD03G1134800' => 'mdo', 'MD05G1348000' => 'mdo', 'MD10G1322400' => 'mdo', 'MD11G1123300' => 'mdo', 'MD11G1157600' => 'mdo', 'Medtr2g084875' => 'mtr', 'Medtr2g088130' => 'mtr', 'Medtr4g055310' => 'mtr', 'Medtr4g061070' => 'mtr', 'Medtr4g132250' => 'mtr', 'MELO3C004795.2' => 'cme', 'MELO3C004797.2' => 'cme', 'MELO3C007396.2' => 'cme', 'MELO3C019277.2' => 'cme', 'MELO3C021449.2' => 'cme', 'MELO3C025736.2' => 'cme', 'Migut.D02175' => 'egut', 'Migut.H01573' => 'egut', 'Migut.M01327' => 'egut', 'Migut.N02513' => 'egut', 'MSTRG.14638' => 'ama', 'MSTRG.18632' => 'ama', 'MSTRG.7203' => 'ama', 'Nitab4.5_0000533g0140' => 'nta', 'Nitab4.5_0000888g0150' => 'nta', 'Nitab4.5_0001453g0040' => 'nta', 'Nitab4.5_0002827g0090' => 'nta', 'Nitab4.5_0003082g0040' => 'nta', 'Nitab4.5_0007799g0040' => 'nta', 'Nitab4.5_0008983g0010' => 'nta', 'Nitab4.5_0009017g0020' => 'nta', 'Nn1g02132' => 'nnu', 'Nn1g03492' => 'nnu', 'Nn1g03493' => 'nnu', 'Nn1g03494' => 'nnu', 'Nn1g07164' => 'nnu', 'Nn1g07291' => 'nnu', 'Nn2g10655' => 'nnu', 'Nn2g11652' => 'nnu', 'Nn2g14008' => 'nnu', 'Nn3g17476' => 'nnu', 'Nn3g17477' => 'nnu', 'Nn4g22370' => 'nnu', 'Nn4g25255' => 'nnu', 'Nn5g27755' => 'nnu', 'Nn6g34260' => 'nnu', 'Nn6g35041' => 'nnu', 'Oeu005924.1' => 'oeu', 'Oeu008383.1' => 'oeu', 'Oeu014928.1' => 'oeu', 'Oeu019889.1' => 'oeu', 'Oeu022271.1' => 'oeu', 'Oeu025271.1' => 'oeu', 'Oeu036302.1' => 'oeu', 'Oeu044100.1' => 'oeu', 'Os01g0528300' => 'osa', 'Os03g0286200' => 'osa', 'Os04g0406600' => 'osa', 'Os07g0512000' => 'osa', 'Os07g0694600' => 'osa', 'Os08g0411000' => 'osa', 'Os09g0565700' => 'osa', 'Os09g0566050' => 'osa', 'Os10g0523700' => 'osa', 'Peaxi162Scf00002g00514' => 'pax', 'Peaxi162Scf00047g01817' => 'pax', 'Peaxi162Scf00114g00001' => 'pax', 'Peaxi162Scf00147g00613' => 'pax', 'Peaxi162Scf00389g00425' => 'pax', 'PGR042G1139' => 'pgr', 'PGR042G3273' => 'pgr', 'PGR102G2180' => 'pgr', 'PGR119G0234' => 'pgr', 'PGR119G0668' => 'pgr', 'PGSC0003DMG400007122' => 'stu', 'PGSC0003DMG400016478' => 'stu', 'PGSC0003DMG400025374' => 'stu', 'PGSC0003DMG400026536' => 'stu', 'Phvul.003G079600' => 'pvu', 'Phvul.005G115600' => 'pvu', 'Phvul.005G127100' => 'pvu', 'Phvul.006G149500' => 'pvu', 'Phvul.006G149600' => 'pvu', 'Phvul.011G071800' => 'pvu', 'Phvul.011G090400' => 'pvu', 'Potri.004G013400' => 'ptr', 'Potri.004G188100' => 'ptr', 'Potri.008G195500' => 'ptr', 'Potri.009G148800' => 'ptr', 'Potri.011G004700' => 'ptr', 'Pp3c17_22810' => 'ppa', 'Pp3c18_4480' => 'ppa', 'Pp3c19_13030' => 'ppa', 'Pp3c1_33620' => 'ppa', 'Pp3c2_9380' => 'ppa', 'PRCOL_00001023' => 'pco', 'Prupe.3G216300' => 'ppe', 'Prupe.4G019500' => 'ppe', 'Prupe.6G092500' => 'ppe', 'Prupe.6G119200' => 'ppe', 'Psat0s1945g0080' => 'psa', 'Psat0s4167g0040' => 'psa', 'Psat1g185800' => 'psa', 'Psat4g006440' => 'psa', 'Psat4g006480' => 'psa', 'Psat4g168120' => 'psa', 'Psat5g255680' => 'psa', 'Psat5g261760' => 'psa', 'Psat7g222120' => 'psa', 'PSO063G7252' => 'pso', 'PSO170G4778' => 'pso', 'PSO210G2249' => 'pso', 'PSO339G2411' => 'pso', 'PSO339G2457' => 'pso', 'PSO339G2854' => 'pso', 'PSO339G4288' => 'pso', 'PSO339G4615' => 'pso', 'PSO384G2796' => 'pso', 'PSO384G2940' => 'pso', 'PSO384G4227' => 'pso', 'PSO478G1425' => 'pso', 'PSO541G3863' => 'pso', 'PSO675G0507' => 'pso', 'PSO782G0338' => 'pso', 'PSO832G0644' => 'pso', 'QL01p013664' => 'qlo', 'QL01p036598' => 'qlo', 'QL05p072984' => 'qlo', 'QL08p005768' => 'qlo', 'QL08p032743' => 'qlo', 'QL93p0073_0439' => 'qlo', 'QL93p0073_0444' => 'qlo', 'RcHm_v2.0_Chr5g0002851' => 'rch', 'RcHm_v2.0_Chr5g0055201' => 'rch', 'RcHm_v2.0_Chr5g0061191' => 'rch', 'RcHm_v2.0_Chr7g0203231' => 'rch', 'Rhsim01G0208100' => 'rsi', 'Rhsim01G0208200' => 'rsi', 'Rhsim02G0106500' => 'rsi', 'Rhsim03G0107900' => 'rsi', 'Rhsim06G0163400' => 'rsi', 'Rhsim13G0105200' => 'rsi', 'Sabra04G0006300' => 'sbr', 'Sabra04G0127000' => 'sbr', 'Sabra08G0148700' => 'sbr', 'Sabra09G0117400' => 'sbr', 'SalBow1G3326' => 'sbo', 'SalBow3G3228' => 'sbo', 'SalBow6G1634' => 'sbo', 'SalBow6G3603' => 'sbo', 'SalBow6G5266' => 'sbo', 'SalBow7G2265' => 'sbo', 'SalBow8G0850' => 'sbo', 'SalBow8G2592' => 'sbo', 'Sc05g0009240' => 'sci', 'Sc12g0002300' => 'sci', 'Sc21g0000100' => 'sci', 'Sc21g0004720' => 'sci', 'Sed0002949' => 'sed', 'Sed0004114' => 'sed', 'Sed0004306' => 'sed', 'Sed0006172' => 'sed', 'Sed0008413' => 'sed', 'Sed0013809' => 'sed', 'Sed0019556' => 'sed', 'SEGI_03570' => 'sgi', 'SEGI_07859' => 'sgi', 'SEGI_15042' => 'sgi', 'SEGI_16263' => 'sgi', 'SEGI_16552' => 'sgi', 'SEGI_24331' => 'sgi', 'SEGI_27316' => 'sgi', 'SEGI_29521' => 'sgi', 'SEGI_41342' => 'sgi', 'SGA_v2.0_scaffold27G11617' => 'sas', 'SGA_v2.0_scaffold316G48428' => 'sas', 'SGA_v2.0_scaffold49G18261' => 'sas', 'SGA_v2.0_scaffold7G03831' => 'sas', 'SGA_v2.0_scaffold93G28359' => 'sas', 'SHI02210' => 'shi', 'SHI06028' => 'shi', 'SHI06321' => 'shi', 'SMO111G0012' => 'smo', 'SMO228G0080' => 'smo', 'SMO356G0756' => 'smo', 'Solyc02g080620.3' => 'sly', 'Solyc06g074530.1' => 'sly', 'Solyc11g066890.1' => 'sly', 'Solyc11g072520.3' => 'sly', 'Sopen02g025330' => 'spe', 'Sopen06g031000' => 'spe', 'Sopen09g008240' => 'spe', 'Sopen09g025210' => 'spe', 'Sopen11g026600' => 'spe', 'Sopen11g030170' => 'spe', 'Sp1g10420' => 'spa', 'Sp3g06570' => 'spa', 'Sp4g10660' => 'spa', 'Sp5g16460' => 'spa', 'Sp6g22710' => 'spa', 'TAR365G0112' => 'tar', 'TAR369G0717' => 'tar', 'TAR374G0976' => 'tar', 'TAR623G1128' => 'tar', 'TAR626G1937' => 'tar', 'TAR627G0123' => 'tar', 'TAR628G0305' => 'tar', 'TAR636G1176' => 'tar', 'TAR636G2442' => 'tar', 'THA.LOC104800556' => 'tha', 'THA.LOC104809501' => 'tha', 'THA.LOC104815126' => 'tha', 'THA.LOC104815732' => 'tha', 'THA.LOC104823528' => 'tha', 'Thecc.02G365600' => 'tca', 'Thecc.06G222300' => 'tca', 'Thecc.09G261800' => 'tca', 'Thecc.09G291400' => 'tca', 'Thhalv10003028m.g' => 'esa', 'Thhalv10007886m.g' => 'esa', 'Thhalv10016085m.g' => 'esa', 'Thhalv10016681m.g' => 'esa', 'Thhalv10020951m.g' => 'esa', 'TPR.G15598' => 'tpr', 'TPR.G29305' => 'tpr', 'TPR.G32395' => 'tpr', 'TPR.G36998' => 'tpr', 'TPR.G4227' => 'tpr', 'TWI18G1433' => 'twi', 'TWI31G0755' => 'twi', 'TWI38G0912' => 'twi', 'TWI75G1097' => 'twi', 'TWI75G1619' => 'twi', 'TWI79G1336' => 'twi', 'unitig_0.g943' => 'ugi', 'unitig_0.g944' => 'ugi', 'unitig_22.g6646' => 'ugi', 'unitig_37.g12681' => 'ugi', 'unitig_8.g3290' => 'ugi', 'vmacro03278' => 'vma', 'vmacro12197' => 'vma', 'vmacro14478' => 'vma', 'vmacro15787' => 'vma', 'vmacro15789' => 'vma', 'vmacro15790' => 'vma', 'vmacro15806' => 'vma', 'vmacro22907' => 'vma', 'vmacro22908' => 'vma', 'vmacro22909' => 'vma', 'vmacro23108' => 'vma', 'VMungo0540G0540' => 'vmu', 'VMungo0540G2468' => 'vmu', 'VMungo1080G0390' => 'vmu', 'VMungo1080G1165' => 'vmu', 'VMungo1127G0170' => 'vmu', 'VMungo1127G2099' => 'vmu', 'VMungo1215G3013' => 'vmu', 'Zm00001eb013110' => 'zma', 'Zm00001eb084260' => 'zma', 'Zm00001eb096110' => 'zma', 'Zm00001eb217510' => 'zma', 'Zm00001eb322550' => 'zma', 'Zm00001eb390770' => 'zma', 'Zm00001eb397170' => 'zma', 'Zm00001eb404610' => 'zma', 'Zm00001eb421790' => 'zma' ) $gf_id = 'HOM05D000911' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000911' ) $data_identifier = 'HOM05D000911' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 16, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 5, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 6, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 8, 'nnu' => (int) 16, 'oeu' => (int) 8, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 5, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 16, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421790' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000911', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27780' => 'bna', 'A03p35380' => 'bna', 'A04p21160' => 'bna', 'A05p40570' => 'bna', 'A06p26900' => 'bna', 'A08p33230' => 'bna', 'A09p65960' => 'bna', 'A10p18290' => 'bna', 'Aa31LG1G12990' => 'aar', 'Aa31LG1G2980' => 'aar', 'Aa31LG4G14320' => 'aar', 'Aa31LG7G11800' => 'aar', 'Aa31sc36G50' => 'aar', 'Aa31sc36G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3721' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5459' => 'aag', 'Actinidia03028' => 'ach', 'Actinidia03753' => 'ach', 'Actinidia04187' => 'ach', 'Actinidia05509' => 'ach', 'Actinidia24180' => 'ach', 'Actinidia26906' => 'ach', 'Actinidia37097' => 'ach', 'Actinidia38249' => 'ach', 'Ah.01g003470' => 'amhyb', 'Ah.01g004580' => 'amhyb', 'Ah.01g014850' => 'amhyb', 'Ah.01g016830' => 'amhyb', 'Ah.14g088000' => 'amhyb', 'AL1G22980' => 'aly', 'AL3G18990' => 'aly', 'AL4G22440' => 'aly', 'AL4G33180' => 'aly', 'AL5G22920' => 'aly', 'AL6G33660' => 'aly', 'AL8G20720' => 'aly', 'Aqoxy1G00935' => 'aox', 'Aqoxy1G02094' => 'aox', 'Aqoxy2G01239' => 'aox', 'Aqoxy4G01870' => 'aox', 'Aqoxy7G00450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.36ZVTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71EM27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5D6C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH3WRE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3NCM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RIM768' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YB5YRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z36GDV' => 'arhy', 'AT1G08250' => 'ath', 'AT1G11790' => 'ath', 'AT2G27820' => 'ath', 'AT3G07630' => 'ath', 'AT3G44720' => 'ath', 'AT5G22630' => 'ath', 'ATR0693G304' => 'atr', 'ATR0794G109' => 'atr', 'ATR0820G120' => 'atr', 'ATR1159G064' => 'atr', 'Atru.chr10.2239' => 'acertr', 'Atru.chr3.3371' => 'acertr', 'Atru.chr6.3202' => 'acertr', 'AUR62006499' => 'cqu', 'AUR62012718' => 'cqu', 'AUR62021938' => 'cqu', 'AUR62023932' => 'cqu', 'AUR62025034' => 'cqu', 'AUR62025035' => 'cqu', 'AUR62038307' => 'cqu', 'AUR62043466' => 'cqu', 'BcaB02g10748' => 'bca', 'BcaB03g13231' => 'bca', 'BcaB03g14689' => 'bca', 'BcaB05g22716' => 'bca', 'BcaB06g28172' => 'bca', 'BcaB08g36413' => 'bca', 'BcaC01g02186' => 'bca', 'BcaC01g04272' => 'bca', 'BcaC02g08080' => 'bca', 'BcaC02g08227' => 'bca', 'BcaC03g13901' => 'bca', 'BcaC04g19593' => 'bca', 'BcaC04g20874' => 'bca', 'BcaC05g29557' => 'bca', 'BcaC06g35505' => 'bca', 'BcaC07g41954' => 'bca', 'BcaC07g41955' => 'bca', 'BcaC07g41956' => 'bca', 'BcaC07g42519' => 'bca', 'BcaC07g42520' => 'bca', 'BcaC07g42523' => 'bca', 'BcaC07g42524' => 'bca', 'BcaC07g42525' => 'bca', 'BcaC08g47480' => 'bca', 'BcaC08g47481' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00530' => 'bna', 'BolC2t07178H' => 'bol', 'BolC3t16567H' => 'bol', 'BolC4t27234H' => 'bol', 'BolC5t29728H' => 'bol', 'BolC5t34622H' => 'bol', 'BolC6t40321H' => 'bol', 'BolC7t42028H' => 'bol', 'BolC8t49125H' => 'bol', 'BolC8t52538H' => 'bol', 'BolC8t52539H' => 'bol', 'BolC9t56681H' => 'bol', 'BolC9t58266H' => 'bol', 'BolSC21t60294H' => 'bol', 'BraA02t05670Z' => 'bra', 'BraA03t12716Z' => 'bra', 'BraA04t17685Z' => 'bra', 'BraA05t22788Z' => 'bra', 'BraA06t24032Z' => 'bra', 'BraA06t25625Z' => 'bra', 'BraA07t27930Z' => 'bra', 'BraA08t35242Z' => 'bra', 'BraA09t38609Z' => 'bra', 'BraA10t43905Z' => 'bra', 'C02p11060' => 'bna', 'C03p42990' => 'bna', 'C03p67310' => 'bna', 'C04p56990' => 'bna', 'C04p58660' => 'bna', 'C05p09890' => 'bna', 'C05p59680' => 'bna', 'C06p19830' => 'bna', 'C06p53040' => 'bna', 'C07p15230' => 'bna', 'C08p50070' => 'bna', 'C08p50090' => 'bna', 'C09p38330' => 'bna', 'C09p53940' => 'bna', 'CAN.G1014.1' => 'can', 'CAN.G644.30' => 'can', 'CAN.G84.47' => 'can', 'CAN.G919.8' => 'can', 'CANSAT54G0113' => 'cansat', 'CANSAT54G1286' => 'cansat', 'CANSAT64G1020' => 'cansat', 'CARHR008080' => 'chi', 'CARHR008090' => 'chi', 'CARHR012130' => 'chi', 'CARHR038390' => 'chi', 'CARHR082330' => 'chi', 'CARHR120520' => 'chi', 'CARHR151470' => 'chi', 'CARHR190950' => 'chi', 'Carub.0001s0760' => 'cru', 'Carub.0001s1146' => 'cru', 'Carub.0003s0721' => 'cru', 'Carub.0004s0858' => 'cru', 'Carub.0005s1040' => 'cru', 'Carub.0006s2035' => 'cru', 'Carub.0015s0005' => 'cru', 'Ca_01607_v3' => 'car', 'Ca_01677_v3' => 'car', 'Ca_06087_v3' => 'car', 'Ca_19238_v3' => 'car', 'Ca_19373_v3' => 'car', 'Ca_21079_v3' => 'car', 'CBR_g54016' => 'cbr', 'CBR_g54018' => 'cbr', 'CBR_g54020' => 'cbr', 'Cc01_g09780' => 'ccan', 'Cc01_g11680' => 'ccan', 'Cc02_g15610' => 'ccan', 'Cc05_g04350' => 'ccan', 'Cc09_g01580' => 'ccan', 'CDE01G0795' => 'cde', 'CDE02G2024' => 'cde', 'CDE02G2260' => 'cde', 'CDE02G4561' => 'cde', 'CDE05G2733' => 'cde', 'CDE05G3422' => 'cde', 'CDE06G2003' => 'cde', 'CDE08G0576' => 'cde', 'CDE09G0048' => 'cde', 'CDE11G0805' => 'cde', 'Cfa003644' => 'cfa', 'Cfa006290' => 'cfa', 'Cfa010080' => 'cfa', 'Cfa011376' => 'cfa', 'Cfa011576' => 'cfa', 'Cfa011577' => 'cfa', 'Cfa014389' => 'cfa', 'Ciclev10006044m.g' => 'ccl', 'Ciclev10006954m.g' => 'ccl', 'Ciclev10015131m.g' => 'ccl', 'Ciclev10015580m.g' => 'ccl', 'Ciclev10028359m.g' => 'ccl', 'Ciclev10028573m.g' => 'ccl', 'CiPaw.03G159300' => 'cil', 'CiPaw.04G115100' => 'cil', 'CiPaw.09G092800' => 'cil', 'CiPaw.10G071800' => 'cil', 'CiPaw.13G105800' => 'cil', 'CiPaw.13G141000' => 'cil', 'CiPaw.14G103400' => 'cil', 'ClCG01G012700' => 'cla', 'ClCG01G012720' => 'cla', 'ClCG01G021920' => 'cla', 'ClCG02G008870' => 'cla', 'ClCG02G020840' => 'cla', 'ClCG02G021930' => 'cla', 'COL.COLO4_19302' => 'col', 'COL.COLO4_25262' => 'col', 'COL.COLO4_31788' => 'col', 'Cpa.g.c34684' => 'cpa', 'Cpa.g.c36520.1' => 'cpa', 'Cpa.g.c45626' => 'cpa', 'Cpa.g.sc121.17' => 'cpa', 'Cpa.g.sc13.22' => 'cpa', 'Cpa.g.sc87.88' => 'cpa', 'Cre06.g261800' => 'cre', 'CsaV3_1G014500' => 'csa', 'CsaV3_1G014510' => 'csa', 'CsaV3_2G034880' => 'csa', 'CsaV3_6G014760' => 'csa', 'CsaV3_6G021500' => 'csa', 'CsaV3_6G048980' => 'csa', 'CSS0002511' => 'camsi', 'CSS0007556' => 'camsi', 'CSS0008532' => 'camsi', 'CSS0009709' => 'camsi', 'CSS0010486' => 'camsi', 'CSS0016768' => 'camsi', 'CSS0023512' => 'camsi', 'CSS0025341' => 'camsi', 'CSS0027999' => 'camsi', 'CSS0028944' => 'camsi', 'CSS0032292' => 'camsi', 'CSS0032464' => 'camsi', 'CSS0037153' => 'camsi', 'CSS0039256' => 'camsi', 'CSS0048392' => 'camsi', 'CSS0050458' => 'camsi', 'DCAR_004224' => 'dca', 'DCAR_006147' => 'dca', 'DCAR_006465' => 'dca', 'DCAR_008159' => 'dca', 'DCAR_012164' => 'dca', 'DCAR_019764' => 'dca', 'Dinv05418' => 'din', 'Dinv10839' => 'din', 'Dinv12521' => 'din', 'Dinv13900' => 'din', 'Dinv29426' => 'din', 'Duzib150G0263' => 'dzi', 'Duzib168G1178' => 'dzi', 'Duzib168G1924' => 'dzi', 'Duzib170G0299' => 'dzi', 'Duzib170G0813' => 'dzi', 'Duzib235G1128' => 'dzi', 'Duzib248G1060' => 'dzi', 'ECA232G1910' => 'eca', 'ECA233G4621' => 'eca', 'ECA238G1216' => 'eca', 'ECA238G1784' => 'eca', 'ECA248G1242' => 'eca', 'EL10Ac8g20071' => 'bvu', 'EL10Ac9g21086' => 'bvu', 'EL10Ac9g22407' => 'bvu', 'EL10Ac9g22412' => 'bvu', 'Eucgr.A01119' => 'egr', 'Eucgr.E04043' => 'egr', 'Eucgr.J00428' => 'egr', 'Eucgr.J00958' => 'egr', 'FAN11G3091' => 'fan', 'FAN11G3651' => 'fan', 'FAN16G2566' => 'fan', 'FAN21G3155' => 'fan', 'FAN21G3400' => 'fan', 'FAN21G3543' => 'fan', 'FAN25G0234' => 'fan', 'FAN25G1422' => 'fan', 'FAN25G3392' => 'fan', 'FvH4_3g01940' => 'fve', 'FvH4_3g29870' => 'fve', 'FvH4_3g33680' => 'fve', 'Glyma.09G004200' => 'gma', 'Glyma.11G151288' => 'gma', 'Glyma.11G189100' => 'gma', 'Glyma.12G072500' => 'gma', 'Glyma.12G085500' => 'gma', 'Glyma.12G181800' => 'gma', 'Glyma.12G193000' => 'gma', 'Glyma.13G309300' => 'gma', 'Glyma.13G319000' => 'gma', 'Glyma.17G012600' => 'gma', 'Gohir.A06G148600' => 'ghi', 'Gohir.A07G115800' => 'ghi', 'Gohir.A08G003600' => 'ghi', 'Gohir.A09G093300' => 'ghi', 'Gohir.A09G105400' => 'ghi', 'Gohir.A09G105500' => 'ghi', 'Gohir.D06G154600' => 'ghi', 'Gohir.D07G120200' => 'ghi', 'Gohir.D08G013900' => 'ghi', 'Gohir.D09G093100' => 'ghi', 'Gohir.D09G102200' => 'ghi', 'Gohir.D09G102300' => 'ghi', 'Gorai.001G129400' => 'gra', 'Gorai.004G008200' => 'gra', 'Gorai.006G109800' => 'gra', 'Gorai.006G119500' => 'gra', 'Gorai.006G121300' => 'gra', 'Gorai.010G180700' => 'gra', 'GSVIVG01012716001' => 'vvi', 'GSVIVG01025118001' => 'vvi', 'GSVIVG01030439001' => 'vvi', 'GSVIVG01031397001' => 'vvi', 'HanXRQChr01g0004201' => 'han', 'HanXRQChr02g0054941' => 'han', 'HanXRQChr05g0141811' => 'han', 'HanXRQChr07g0197751' => 'han', 'HanXRQChr11g0346691' => 'han', 'HanXRQChr13g0396971' => 'han', 'HanXRQChr14g0432951' => 'han', 'HanXRQChr14g0452001' => 'han', 'HanXRQChr15g0496681' => 'han', 'HanXRQChr17g0557491' => 'han', 'HanXRQChr17g0557501' => 'han', 'Haze_06809' => 'cav', 'Haze_12852' => 'cav', 'Haze_15850' => 'cav', 'Haze_23446' => 'cav', 'Haze_23942' => 'cav', 'Haze_23943' => 'cav', 'Hma1.2p1_0091F.1_g046450' => 'hma', 'Hma1.2p1_0128F.1_g059910' => 'hma', 'Hma1.2p1_0249F.1_g102260' => 'hma', 'Hma1.2p1_0453F.1_g156190' => 'hma', 'Hma1.2p1_0695F.1_g204380' => 'hma', 'Hma1.2p1_0749F.1_g212650' => 'hma', 'Hma1.2p1_2156F.1_g315420' => 'hma', 'Hma1.2p1_2686F.1_g326940' => 'hma', 'HPP92_006428' => 'vpl', 'HPP92_012069' => 'vpl', 'HPP92_014129' => 'vpl', 'HPP92_014133' => 'vpl', 'HPP92_017315' => 'vpl', 'HPP92_026445' => 'vpl', 'HPP92_026446' => 'vpl', 'Hund00774' => 'sun', 'Hund07682' => 'sun', 'Hund21413' => 'sun', 'Hund23462' => 'sun', 'Hund23463' => 'sun', 'Lalb_Chr03g0027911' => 'lal', 'Lalb_Chr13g0304271' => 'lal', 'Lalb_Chr19g0137471' => 'lal', 'Lalb_Chr22g0350651' => 'lal', 'Lalb_Chr24g0395151' => 'lal', 'Lj1A1231T40' => 'lonja', 'Lj1A221T48' => 'lonja', 'Lj1C924T12' => 'lonja', 'Lj2C993G6' => 'lonja', 'Lj3g0005790' => 'lja', 'Lj3g0015432' => 'lja', 'Lj3g0017722' => 'lja', 'Lj3g0018497' => 'lja', 'Lj4g0025071' => 'lja', 'Lsat_1_v5_gn_1_129680' => 'lsa', 'Lsat_1_v5_gn_2_25321' => 'lsa', 'Lsat_1_v5_gn_2_95461' => 'lsa', 'Lsat_1_v5_gn_4_159620' => 'lsa', 'Lsat_1_v5_gn_6_41301' => 'lsa', 'Lsat_1_v5_gn_6_74660' => 'lsa', 'Lsat_1_v5_gn_7_11520' => 'lsa', 'Lsat_1_v5_gn_9_67680' => 'lsa', 'Manes.04G008300' => 'mes', 'Manes.04G008400' => 'mes', 'Manes.04G026500' => 'mes', 'Manes.10G135300' => 'mes', 'Manes.11G157300' => 'mes', 'Manes.12G074000' => 'mes', 'Manes.16G006200' => 'mes', 'Manes.17G026400' => 'mes', 'Mapoly0024s0086' => 'mpo', 'Mapoly0024s0087' => 'mpo', 'Mapoly0071s0057' => 'mpo', 'Mapoly0204s0012' => 'mpo', 'MBI04_g37681_MAGBIO' => 'mbi', 'MBI05_g17779_MAGBIO' => 'mbi', 'MBI12_g31184_MAGBIO' => 'mbi', 'MBI17_g11083_MAGBIO' => 'mbi', 'MBI18_g03883_MAGBIO' => 'mbi', 'MBI18_g28940_MAGBIO' => 'mbi', 'MCO01G690' => 'mco', 'MD03G1109900' => 'mdo', 'MD03G1134800' => 'mdo', 'MD05G1348000' => 'mdo', 'MD10G1322400' => 'mdo', 'MD11G1123300' => 'mdo', 'MD11G1157600' => 'mdo', 'Medtr2g084875' => 'mtr', 'Medtr2g088130' => 'mtr', 'Medtr4g055310' => 'mtr', 'Medtr4g061070' => 'mtr', 'Medtr4g132250' => 'mtr', 'MELO3C004795.2' => 'cme', 'MELO3C004797.2' => 'cme', 'MELO3C007396.2' => 'cme', 'MELO3C019277.2' => 'cme', 'MELO3C021449.2' => 'cme', 'MELO3C025736.2' => 'cme', 'Migut.D02175' => 'egut', 'Migut.H01573' => 'egut', 'Migut.M01327' => 'egut', 'Migut.N02513' => 'egut', 'MSTRG.14638' => 'ama', 'MSTRG.18632' => 'ama', 'MSTRG.7203' => 'ama', 'Nitab4.5_0000533g0140' => 'nta', 'Nitab4.5_0000888g0150' => 'nta', 'Nitab4.5_0001453g0040' => 'nta', 'Nitab4.5_0002827g0090' => 'nta', 'Nitab4.5_0003082g0040' => 'nta', 'Nitab4.5_0007799g0040' => 'nta', 'Nitab4.5_0008983g0010' => 'nta', 'Nitab4.5_0009017g0020' => 'nta', 'Nn1g02132' => 'nnu', 'Nn1g03492' => 'nnu', 'Nn1g03493' => 'nnu', 'Nn1g03494' => 'nnu', 'Nn1g07164' => 'nnu', 'Nn1g07291' => 'nnu', 'Nn2g10655' => 'nnu', 'Nn2g11652' => 'nnu', 'Nn2g14008' => 'nnu', 'Nn3g17476' => 'nnu', 'Nn3g17477' => 'nnu', 'Nn4g22370' => 'nnu', 'Nn4g25255' => 'nnu', 'Nn5g27755' => 'nnu', 'Nn6g34260' => 'nnu', 'Nn6g35041' => 'nnu', 'Oeu005924.1' => 'oeu', 'Oeu008383.1' => 'oeu', 'Oeu014928.1' => 'oeu', 'Oeu019889.1' => 'oeu', 'Oeu022271.1' => 'oeu', 'Oeu025271.1' => 'oeu', 'Oeu036302.1' => 'oeu', 'Oeu044100.1' => 'oeu', 'Os01g0528300' => 'osa', 'Os03g0286200' => 'osa', 'Os04g0406600' => 'osa', 'Os07g0512000' => 'osa', 'Os07g0694600' => 'osa', 'Os08g0411000' => 'osa', 'Os09g0565700' => 'osa', 'Os09g0566050' => 'osa', 'Os10g0523700' => 'osa', 'Peaxi162Scf00002g00514' => 'pax', 'Peaxi162Scf00047g01817' => 'pax', 'Peaxi162Scf00114g00001' => 'pax', 'Peaxi162Scf00147g00613' => 'pax', 'Peaxi162Scf00389g00425' => 'pax', 'PGR042G1139' => 'pgr', 'PGR042G3273' => 'pgr', 'PGR102G2180' => 'pgr', 'PGR119G0234' => 'pgr', 'PGR119G0668' => 'pgr', 'PGSC0003DMG400007122' => 'stu', 'PGSC0003DMG400016478' => 'stu', 'PGSC0003DMG400025374' => 'stu', 'PGSC0003DMG400026536' => 'stu', 'Phvul.003G079600' => 'pvu', 'Phvul.005G115600' => 'pvu', 'Phvul.005G127100' => 'pvu', 'Phvul.006G149500' => 'pvu', 'Phvul.006G149600' => 'pvu', 'Phvul.011G071800' => 'pvu', 'Phvul.011G090400' => 'pvu', 'Potri.004G013400' => 'ptr', 'Potri.004G188100' => 'ptr', 'Potri.008G195500' => 'ptr', 'Potri.009G148800' => 'ptr', 'Potri.011G004700' => 'ptr', 'Pp3c17_22810' => 'ppa', 'Pp3c18_4480' => 'ppa', 'Pp3c19_13030' => 'ppa', 'Pp3c1_33620' => 'ppa', 'Pp3c2_9380' => 'ppa', 'PRCOL_00001023' => 'pco', 'Prupe.3G216300' => 'ppe', 'Prupe.4G019500' => 'ppe', 'Prupe.6G092500' => 'ppe', 'Prupe.6G119200' => 'ppe', 'Psat0s1945g0080' => 'psa', 'Psat0s4167g0040' => 'psa', 'Psat1g185800' => 'psa', 'Psat4g006440' => 'psa', 'Psat4g006480' => 'psa', 'Psat4g168120' => 'psa', 'Psat5g255680' => 'psa', 'Psat5g261760' => 'psa', 'Psat7g222120' => 'psa', 'PSO063G7252' => 'pso', 'PSO170G4778' => 'pso', 'PSO210G2249' => 'pso', 'PSO339G2411' => 'pso', 'PSO339G2457' => 'pso', 'PSO339G2854' => 'pso', 'PSO339G4288' => 'pso', 'PSO339G4615' => 'pso', 'PSO384G2796' => 'pso', 'PSO384G2940' => 'pso', 'PSO384G4227' => 'pso', 'PSO478G1425' => 'pso', 'PSO541G3863' => 'pso', 'PSO675G0507' => 'pso', 'PSO782G0338' => 'pso', 'PSO832G0644' => 'pso', 'QL01p013664' => 'qlo', 'QL01p036598' => 'qlo', 'QL05p072984' => 'qlo', 'QL08p005768' => 'qlo', 'QL08p032743' => 'qlo', 'QL93p0073_0439' => 'qlo', 'QL93p0073_0444' => 'qlo', 'RcHm_v2.0_Chr5g0002851' => 'rch', 'RcHm_v2.0_Chr5g0055201' => 'rch', 'RcHm_v2.0_Chr5g0061191' => 'rch', 'RcHm_v2.0_Chr7g0203231' => 'rch', 'Rhsim01G0208100' => 'rsi', 'Rhsim01G0208200' => 'rsi', 'Rhsim02G0106500' => 'rsi', 'Rhsim03G0107900' => 'rsi', 'Rhsim06G0163400' => 'rsi', 'Rhsim13G0105200' => 'rsi', 'Sabra04G0006300' => 'sbr', 'Sabra04G0127000' => 'sbr', 'Sabra08G0148700' => 'sbr', 'Sabra09G0117400' => 'sbr', 'SalBow1G3326' => 'sbo', 'SalBow3G3228' => 'sbo', 'SalBow6G1634' => 'sbo', 'SalBow6G3603' => 'sbo', 'SalBow6G5266' => 'sbo', 'SalBow7G2265' => 'sbo', 'SalBow8G0850' => 'sbo', 'SalBow8G2592' => 'sbo', 'Sc05g0009240' => 'sci', 'Sc12g0002300' => 'sci', 'Sc21g0000100' => 'sci', 'Sc21g0004720' => 'sci', 'Sed0002949' => 'sed', 'Sed0004114' => 'sed', 'Sed0004306' => 'sed', 'Sed0006172' => 'sed', 'Sed0008413' => 'sed', 'Sed0013809' => 'sed', 'Sed0019556' => 'sed', 'SEGI_03570' => 'sgi', 'SEGI_07859' => 'sgi', 'SEGI_15042' => 'sgi', 'SEGI_16263' => 'sgi', 'SEGI_16552' => 'sgi', 'SEGI_24331' => 'sgi', 'SEGI_27316' => 'sgi', 'SEGI_29521' => 'sgi', 'SEGI_41342' => 'sgi', 'SGA_v2.0_scaffold27G11617' => 'sas', 'SGA_v2.0_scaffold316G48428' => 'sas', 'SGA_v2.0_scaffold49G18261' => 'sas', 'SGA_v2.0_scaffold7G03831' => 'sas', 'SGA_v2.0_scaffold93G28359' => 'sas', 'SHI02210' => 'shi', 'SHI06028' => 'shi', 'SHI06321' => 'shi', 'SMO111G0012' => 'smo', 'SMO228G0080' => 'smo', 'SMO356G0756' => 'smo', 'Solyc02g080620.3' => 'sly', 'Solyc06g074530.1' => 'sly', 'Solyc11g066890.1' => 'sly', 'Solyc11g072520.3' => 'sly', 'Sopen02g025330' => 'spe', 'Sopen06g031000' => 'spe', 'Sopen09g008240' => 'spe', 'Sopen09g025210' => 'spe', 'Sopen11g026600' => 'spe', 'Sopen11g030170' => 'spe', 'Sp1g10420' => 'spa', 'Sp3g06570' => 'spa', 'Sp4g10660' => 'spa', 'Sp5g16460' => 'spa', 'Sp6g22710' => 'spa', 'TAR365G0112' => 'tar', 'TAR369G0717' => 'tar', 'TAR374G0976' => 'tar', 'TAR623G1128' => 'tar', 'TAR626G1937' => 'tar', 'TAR627G0123' => 'tar', 'TAR628G0305' => 'tar', 'TAR636G1176' => 'tar', 'TAR636G2442' => 'tar', 'THA.LOC104800556' => 'tha', 'THA.LOC104809501' => 'tha', 'THA.LOC104815126' => 'tha', 'THA.LOC104815732' => 'tha', 'THA.LOC104823528' => 'tha', 'Thecc.02G365600' => 'tca', 'Thecc.06G222300' => 'tca', 'Thecc.09G261800' => 'tca', 'Thecc.09G291400' => 'tca', 'Thhalv10003028m.g' => 'esa', 'Thhalv10007886m.g' => 'esa', 'Thhalv10016085m.g' => 'esa', 'Thhalv10016681m.g' => 'esa', 'Thhalv10020951m.g' => 'esa', 'TPR.G15598' => 'tpr', 'TPR.G29305' => 'tpr', 'TPR.G32395' => 'tpr', 'TPR.G36998' => 'tpr', 'TPR.G4227' => 'tpr', 'TWI18G1433' => 'twi', 'TWI31G0755' => 'twi', 'TWI38G0912' => 'twi', 'TWI75G1097' => 'twi', 'TWI75G1619' => 'twi', 'TWI79G1336' => 'twi', 'unitig_0.g943' => 'ugi', 'unitig_0.g944' => 'ugi', 'unitig_22.g6646' => 'ugi', 'unitig_37.g12681' => 'ugi', 'unitig_8.g3290' => 'ugi', 'vmacro03278' => 'vma', 'vmacro12197' => 'vma', 'vmacro14478' => 'vma', 'vmacro15787' => 'vma', 'vmacro15789' => 'vma', 'vmacro15790' => 'vma', 'vmacro15806' => 'vma', 'vmacro22907' => 'vma', 'vmacro22908' => 'vma', 'vmacro22909' => 'vma', 'vmacro23108' => 'vma', 'VMungo0540G0540' => 'vmu', 'VMungo0540G2468' => 'vmu', 'VMungo1080G0390' => 'vmu', 'VMungo1080G1165' => 'vmu', 'VMungo1127G0170' => 'vmu', 'VMungo1127G2099' => 'vmu', 'VMungo1215G3013' => 'vmu', 'Zm00001eb013110' => 'zma', 'Zm00001eb084260' => 'zma', 'Zm00001eb096110' => 'zma', 'Zm00001eb217510' => 'zma', 'Zm00001eb322550' => 'zma', 'Zm00001eb390770' => 'zma', 'Zm00001eb397170' => 'zma', 'Zm00001eb404610' => 'zma', 'Zm00001eb421790' => 'zma' ), 'gf_id' => 'HOM05D000911', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000911' ), 'data_identifier' => 'HOM05D000911', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000911', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27780' => 'bna', 'A03p35380' => 'bna', 'A04p21160' => 'bna', 'A05p40570' => 'bna', 'A06p26900' => 'bna', 'A08p33230' => 'bna', 'A09p65960' => 'bna', 'A10p18290' => 'bna', 'Aa31LG1G12990' => 'aar', 'Aa31LG1G2980' => 'aar', 'Aa31LG4G14320' => 'aar', 'Aa31LG7G11800' => 'aar', 'Aa31sc36G50' => 'aar', 'Aa31sc36G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3721' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5459' => 'aag', 'Actinidia03028' => 'ach', 'Actinidia03753' => 'ach', 'Actinidia04187' => 'ach', 'Actinidia05509' => 'ach', 'Actinidia24180' => 'ach', 'Actinidia26906' => 'ach', 'Actinidia37097' => 'ach', 'Actinidia38249' => 'ach', 'Ah.01g003470' => 'amhyb', 'Ah.01g004580' => 'amhyb', 'Ah.01g014850' => 'amhyb', 'Ah.01g016830' => 'amhyb', 'Ah.14g088000' => 'amhyb', 'AL1G22980' => 'aly', 'AL3G18990' => 'aly', 'AL4G22440' => 'aly', 'AL4G33180' => 'aly', 'AL5G22920' => 'aly', 'AL6G33660' => 'aly', 'AL8G20720' => 'aly', 'Aqoxy1G00935' => 'aox', 'Aqoxy1G02094' => 'aox', 'Aqoxy2G01239' => 'aox', 'Aqoxy4G01870' => 'aox', 'Aqoxy7G00450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.36ZVTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71EM27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5D6C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH3WRE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3NCM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RIM768' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YB5YRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z36GDV' => 'arhy', 'AT1G08250' => 'ath', 'AT1G11790' => 'ath', 'AT2G27820' => 'ath', 'AT3G07630' => 'ath', 'AT3G44720' => 'ath', 'AT5G22630' => 'ath', 'ATR0693G304' => 'atr', 'ATR0794G109' => 'atr', 'ATR0820G120' => 'atr', 'ATR1159G064' => 'atr', 'Atru.chr10.2239' => 'acertr', 'Atru.chr3.3371' => 'acertr', 'Atru.chr6.3202' => 'acertr', 'AUR62006499' => 'cqu', 'AUR62012718' => 'cqu', 'AUR62021938' => 'cqu', 'AUR62023932' => 'cqu', 'AUR62025034' => 'cqu', 'AUR62025035' => 'cqu', 'AUR62038307' => 'cqu', 'AUR62043466' => 'cqu', 'BcaB02g10748' => 'bca', 'BcaB03g13231' => 'bca', 'BcaB03g14689' => 'bca', 'BcaB05g22716' => 'bca', 'BcaB06g28172' => 'bca', 'BcaB08g36413' => 'bca', 'BcaC01g02186' => 'bca', 'BcaC01g04272' => 'bca', 'BcaC02g08080' => 'bca', 'BcaC02g08227' => 'bca', 'BcaC03g13901' => 'bca', 'BcaC04g19593' => 'bca', 'BcaC04g20874' => 'bca', 'BcaC05g29557' => 'bca', 'BcaC06g35505' => 'bca', 'BcaC07g41954' => 'bca', 'BcaC07g41955' => 'bca', 'BcaC07g41956' => 'bca', 'BcaC07g42519' => 'bca', 'BcaC07g42520' => 'bca', 'BcaC07g42523' => 'bca', 'BcaC07g42524' => 'bca', 'BcaC07g42525' => 'bca', 'BcaC08g47480' => 'bca', 'BcaC08g47481' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00530' => 'bna', 'BolC2t07178H' => 'bol', 'BolC3t16567H' => 'bol', 'BolC4t27234H' => 'bol', 'BolC5t29728H' => 'bol', 'BolC5t34622H' => 'bol', 'BolC6t40321H' => 'bol', 'BolC7t42028H' => 'bol', 'BolC8t49125H' => 'bol', 'BolC8t52538H' => 'bol', 'BolC8t52539H' => 'bol', 'BolC9t56681H' => 'bol', 'BolC9t58266H' => 'bol', 'BolSC21t60294H' => 'bol', 'BraA02t05670Z' => 'bra', 'BraA03t12716Z' => 'bra', 'BraA04t17685Z' => 'bra', 'BraA05t22788Z' => 'bra', 'BraA06t24032Z' => 'bra', 'BraA06t25625Z' => 'bra', 'BraA07t27930Z' => 'bra', 'BraA08t35242Z' => 'bra', 'BraA09t38609Z' => 'bra', 'BraA10t43905Z' => 'bra', 'C02p11060' => 'bna', 'C03p42990' => 'bna', 'C03p67310' => 'bna', 'C04p56990' => 'bna', 'C04p58660' => 'bna', 'C05p09890' => 'bna', 'C05p59680' => 'bna', 'C06p19830' => 'bna', 'C06p53040' => 'bna', 'C07p15230' => 'bna', 'C08p50070' => 'bna', 'C08p50090' => 'bna', 'C09p38330' => 'bna', 'C09p53940' => 'bna', 'CAN.G1014.1' => 'can', 'CAN.G644.30' => 'can', 'CAN.G84.47' => 'can', 'CAN.G919.8' => 'can', 'CANSAT54G0113' => 'cansat', 'CANSAT54G1286' => 'cansat', 'CANSAT64G1020' => 'cansat', 'CARHR008080' => 'chi', 'CARHR008090' => 'chi', 'CARHR012130' => 'chi', 'CARHR038390' => 'chi', 'CARHR082330' => 'chi', 'CARHR120520' => 'chi', 'CARHR151470' => 'chi', 'CARHR190950' => 'chi', 'Carub.0001s0760' => 'cru', 'Carub.0001s1146' => 'cru', 'Carub.0003s0721' => 'cru', 'Carub.0004s0858' => 'cru', 'Carub.0005s1040' => 'cru', 'Carub.0006s2035' => 'cru', 'Carub.0015s0005' => 'cru', 'Ca_01607_v3' => 'car', 'Ca_01677_v3' => 'car', 'Ca_06087_v3' => 'car', 'Ca_19238_v3' => 'car', 'Ca_19373_v3' => 'car', 'Ca_21079_v3' => 'car', 'CBR_g54016' => 'cbr', 'CBR_g54018' => 'cbr', 'CBR_g54020' => 'cbr', 'Cc01_g09780' => 'ccan', 'Cc01_g11680' => 'ccan', 'Cc02_g15610' => 'ccan', 'Cc05_g04350' => 'ccan', 'Cc09_g01580' => 'ccan', 'CDE01G0795' => 'cde', 'CDE02G2024' => 'cde', 'CDE02G2260' => 'cde', 'CDE02G4561' => 'cde', 'CDE05G2733' => 'cde', 'CDE05G3422' => 'cde', 'CDE06G2003' => 'cde', 'CDE08G0576' => 'cde', 'CDE09G0048' => 'cde', 'CDE11G0805' => 'cde', 'Cfa003644' => 'cfa', 'Cfa006290' => 'cfa', 'Cfa010080' => 'cfa', 'Cfa011376' => 'cfa', 'Cfa011576' => 'cfa', 'Cfa011577' => 'cfa', 'Cfa014389' => 'cfa', 'Ciclev10006044m.g' => 'ccl', 'Ciclev10006954m.g' => 'ccl', 'Ciclev10015131m.g' => 'ccl', 'Ciclev10015580m.g' => 'ccl', 'Ciclev10028359m.g' => 'ccl', 'Ciclev10028573m.g' => 'ccl', 'CiPaw.03G159300' => 'cil', 'CiPaw.04G115100' => 'cil', 'CiPaw.09G092800' => 'cil', 'CiPaw.10G071800' => 'cil', 'CiPaw.13G105800' => 'cil', 'CiPaw.13G141000' => 'cil', 'CiPaw.14G103400' => 'cil', 'ClCG01G012700' => 'cla', 'ClCG01G012720' => 'cla', 'ClCG01G021920' => 'cla', 'ClCG02G008870' => 'cla', 'ClCG02G020840' => 'cla', 'ClCG02G021930' => 'cla', 'COL.COLO4_19302' => 'col', 'COL.COLO4_25262' => 'col', 'COL.COLO4_31788' => 'col', 'Cpa.g.c34684' => 'cpa', 'Cpa.g.c36520.1' => 'cpa', 'Cpa.g.c45626' => 'cpa', 'Cpa.g.sc121.17' => 'cpa', 'Cpa.g.sc13.22' => 'cpa', 'Cpa.g.sc87.88' => 'cpa', 'Cre06.g261800' => 'cre', 'CsaV3_1G014500' => 'csa', 'CsaV3_1G014510' => 'csa', 'CsaV3_2G034880' => 'csa', 'CsaV3_6G014760' => 'csa', 'CsaV3_6G021500' => 'csa', 'CsaV3_6G048980' => 'csa', 'CSS0002511' => 'camsi', 'CSS0007556' => 'camsi', 'CSS0008532' => 'camsi', 'CSS0009709' => 'camsi', 'CSS0010486' => 'camsi', 'CSS0016768' => 'camsi', 'CSS0023512' => 'camsi', 'CSS0025341' => 'camsi', 'CSS0027999' => 'camsi', 'CSS0028944' => 'camsi', 'CSS0032292' => 'camsi', 'CSS0032464' => 'camsi', 'CSS0037153' => 'camsi', 'CSS0039256' => 'camsi', 'CSS0048392' => 'camsi', 'CSS0050458' => 'camsi', 'DCAR_004224' => 'dca', 'DCAR_006147' => 'dca', 'DCAR_006465' => 'dca', 'DCAR_008159' => 'dca', 'DCAR_012164' => 'dca', 'DCAR_019764' => 'dca', 'Dinv05418' => 'din', 'Dinv10839' => 'din', 'Dinv12521' => 'din', 'Dinv13900' => 'din', 'Dinv29426' => 'din', 'Duzib150G0263' => 'dzi', 'Duzib168G1178' => 'dzi', 'Duzib168G1924' => 'dzi', 'Duzib170G0299' => 'dzi', 'Duzib170G0813' => 'dzi', 'Duzib235G1128' => 'dzi', 'Duzib248G1060' => 'dzi', 'ECA232G1910' => 'eca', 'ECA233G4621' => 'eca', 'ECA238G1216' => 'eca', 'ECA238G1784' => 'eca', 'ECA248G1242' => 'eca', 'EL10Ac8g20071' => 'bvu', 'EL10Ac9g21086' => 'bvu', 'EL10Ac9g22407' => 'bvu', 'EL10Ac9g22412' => 'bvu', 'Eucgr.A01119' => 'egr', 'Eucgr.E04043' => 'egr', 'Eucgr.J00428' => 'egr', 'Eucgr.J00958' => 'egr', 'FAN11G3091' => 'fan', 'FAN11G3651' => 'fan', 'FAN16G2566' => 'fan', 'FAN21G3155' => 'fan', 'FAN21G3400' => 'fan', 'FAN21G3543' => 'fan', 'FAN25G0234' => 'fan', 'FAN25G1422' => 'fan', 'FAN25G3392' => 'fan', 'FvH4_3g01940' => 'fve', 'FvH4_3g29870' => 'fve', 'FvH4_3g33680' => 'fve', 'Glyma.09G004200' => 'gma', 'Glyma.11G151288' => 'gma', 'Glyma.11G189100' => 'gma', 'Glyma.12G072500' => 'gma', 'Glyma.12G085500' => 'gma', 'Glyma.12G181800' => 'gma', 'Glyma.12G193000' => 'gma', 'Glyma.13G309300' => 'gma', 'Glyma.13G319000' => 'gma', 'Glyma.17G012600' => 'gma', 'Gohir.A06G148600' => 'ghi', 'Gohir.A07G115800' => 'ghi', 'Gohir.A08G003600' => 'ghi', 'Gohir.A09G093300' => 'ghi', 'Gohir.A09G105400' => 'ghi', 'Gohir.A09G105500' => 'ghi', 'Gohir.D06G154600' => 'ghi', 'Gohir.D07G120200' => 'ghi', 'Gohir.D08G013900' => 'ghi', 'Gohir.D09G093100' => 'ghi', 'Gohir.D09G102200' => 'ghi', 'Gohir.D09G102300' => 'ghi', 'Gorai.001G129400' => 'gra', 'Gorai.004G008200' => 'gra', 'Gorai.006G109800' => 'gra', 'Gorai.006G119500' => 'gra', 'Gorai.006G121300' => 'gra', 'Gorai.010G180700' => 'gra', 'GSVIVG01012716001' => 'vvi', 'GSVIVG01025118001' => 'vvi', 'GSVIVG01030439001' => 'vvi', 'GSVIVG01031397001' => 'vvi', 'HanXRQChr01g0004201' => 'han', 'HanXRQChr02g0054941' => 'han', 'HanXRQChr05g0141811' => 'han', 'HanXRQChr07g0197751' => 'han', 'HanXRQChr11g0346691' => 'han', 'HanXRQChr13g0396971' => 'han', 'HanXRQChr14g0432951' => 'han', 'HanXRQChr14g0452001' => 'han', 'HanXRQChr15g0496681' => 'han', 'HanXRQChr17g0557491' => 'han', 'HanXRQChr17g0557501' => 'han', 'Haze_06809' => 'cav', 'Haze_12852' => 'cav', 'Haze_15850' => 'cav', 'Haze_23446' => 'cav', 'Haze_23942' => 'cav', 'Haze_23943' => 'cav', 'Hma1.2p1_0091F.1_g046450' => 'hma', 'Hma1.2p1_0128F.1_g059910' => 'hma', 'Hma1.2p1_0249F.1_g102260' => 'hma', 'Hma1.2p1_0453F.1_g156190' => 'hma', 'Hma1.2p1_0695F.1_g204380' => 'hma', 'Hma1.2p1_0749F.1_g212650' => 'hma', 'Hma1.2p1_2156F.1_g315420' => 'hma', 'Hma1.2p1_2686F.1_g326940' => 'hma', 'HPP92_006428' => 'vpl', 'HPP92_012069' => 'vpl', 'HPP92_014129' => 'vpl', 'HPP92_014133' => 'vpl', 'HPP92_017315' => 'vpl', 'HPP92_026445' => 'vpl', 'HPP92_026446' => 'vpl', 'Hund00774' => 'sun', 'Hund07682' => 'sun', 'Hund21413' => 'sun', 'Hund23462' => 'sun', 'Hund23463' => 'sun', 'Lalb_Chr03g0027911' => 'lal', 'Lalb_Chr13g0304271' => 'lal', 'Lalb_Chr19g0137471' => 'lal', 'Lalb_Chr22g0350651' => 'lal', 'Lalb_Chr24g0395151' => 'lal', 'Lj1A1231T40' => 'lonja', 'Lj1A221T48' => 'lonja', 'Lj1C924T12' => 'lonja', 'Lj2C993G6' => 'lonja', 'Lj3g0005790' => 'lja', 'Lj3g0015432' => 'lja', 'Lj3g0017722' => 'lja', 'Lj3g0018497' => 'lja', 'Lj4g0025071' => 'lja', 'Lsat_1_v5_gn_1_129680' => 'lsa', 'Lsat_1_v5_gn_2_25321' => 'lsa', 'Lsat_1_v5_gn_2_95461' => 'lsa', 'Lsat_1_v5_gn_4_159620' => 'lsa', 'Lsat_1_v5_gn_6_41301' => 'lsa', 'Lsat_1_v5_gn_6_74660' => 'lsa', 'Lsat_1_v5_gn_7_11520' => 'lsa', 'Lsat_1_v5_gn_9_67680' => 'lsa', 'Manes.04G008300' => 'mes', 'Manes.04G008400' => 'mes', 'Manes.04G026500' => 'mes', 'Manes.10G135300' => 'mes', 'Manes.11G157300' => 'mes', 'Manes.12G074000' => 'mes', 'Manes.16G006200' => 'mes', 'Manes.17G026400' => 'mes', 'Mapoly0024s0086' => 'mpo', 'Mapoly0024s0087' => 'mpo', 'Mapoly0071s0057' => 'mpo', 'Mapoly0204s0012' => 'mpo', 'MBI04_g37681_MAGBIO' => 'mbi', 'MBI05_g17779_MAGBIO' => 'mbi', 'MBI12_g31184_MAGBIO' => 'mbi', 'MBI17_g11083_MAGBIO' => 'mbi', 'MBI18_g03883_MAGBIO' => 'mbi', 'MBI18_g28940_MAGBIO' => 'mbi', 'MCO01G690' => 'mco', 'MD03G1109900' => 'mdo', 'MD03G1134800' => 'mdo', 'MD05G1348000' => 'mdo', 'MD10G1322400' => 'mdo', 'MD11G1123300' => 'mdo', 'MD11G1157600' => 'mdo', 'Medtr2g084875' => 'mtr', 'Medtr2g088130' => 'mtr', 'Medtr4g055310' => 'mtr', 'Medtr4g061070' => 'mtr', 'Medtr4g132250' => 'mtr', 'MELO3C004795.2' => 'cme', 'MELO3C004797.2' => 'cme', 'MELO3C007396.2' => 'cme', 'MELO3C019277.2' => 'cme', 'MELO3C021449.2' => 'cme', 'MELO3C025736.2' => 'cme', 'Migut.D02175' => 'egut', 'Migut.H01573' => 'egut', 'Migut.M01327' => 'egut', 'Migut.N02513' => 'egut', 'MSTRG.14638' => 'ama', 'MSTRG.18632' => 'ama', 'MSTRG.7203' => 'ama', 'Nitab4.5_0000533g0140' => 'nta', 'Nitab4.5_0000888g0150' => 'nta', 'Nitab4.5_0001453g0040' => 'nta', 'Nitab4.5_0002827g0090' => 'nta', 'Nitab4.5_0003082g0040' => 'nta', 'Nitab4.5_0007799g0040' => 'nta', 'Nitab4.5_0008983g0010' => 'nta', 'Nitab4.5_0009017g0020' => 'nta', 'Nn1g02132' => 'nnu', 'Nn1g03492' => 'nnu', 'Nn1g03493' => 'nnu', 'Nn1g03494' => 'nnu', 'Nn1g07164' => 'nnu', 'Nn1g07291' => 'nnu', 'Nn2g10655' => 'nnu', 'Nn2g11652' => 'nnu', 'Nn2g14008' => 'nnu', 'Nn3g17476' => 'nnu', 'Nn3g17477' => 'nnu', 'Nn4g22370' => 'nnu', 'Nn4g25255' => 'nnu', 'Nn5g27755' => 'nnu', 'Nn6g34260' => 'nnu', 'Nn6g35041' => 'nnu', 'Oeu005924.1' => 'oeu', 'Oeu008383.1' => 'oeu', 'Oeu014928.1' => 'oeu', 'Oeu019889.1' => 'oeu', 'Oeu022271.1' => 'oeu', 'Oeu025271.1' => 'oeu', 'Oeu036302.1' => 'oeu', 'Oeu044100.1' => 'oeu', 'Os01g0528300' => 'osa', 'Os03g0286200' => 'osa', 'Os04g0406600' => 'osa', 'Os07g0512000' => 'osa', 'Os07g0694600' => 'osa', 'Os08g0411000' => 'osa', 'Os09g0565700' => 'osa', 'Os09g0566050' => 'osa', 'Os10g0523700' => 'osa', 'Peaxi162Scf00002g00514' => 'pax', 'Peaxi162Scf00047g01817' => 'pax', 'Peaxi162Scf00114g00001' => 'pax', 'Peaxi162Scf00147g00613' => 'pax', 'Peaxi162Scf00389g00425' => 'pax', 'PGR042G1139' => 'pgr', 'PGR042G3273' => 'pgr', 'PGR102G2180' => 'pgr', 'PGR119G0234' => 'pgr', 'PGR119G0668' => 'pgr', 'PGSC0003DMG400007122' => 'stu', 'PGSC0003DMG400016478' => 'stu', 'PGSC0003DMG400025374' => 'stu', 'PGSC0003DMG400026536' => 'stu', 'Phvul.003G079600' => 'pvu', 'Phvul.005G115600' => 'pvu', 'Phvul.005G127100' => 'pvu', 'Phvul.006G149500' => 'pvu', 'Phvul.006G149600' => 'pvu', 'Phvul.011G071800' => 'pvu', 'Phvul.011G090400' => 'pvu', 'Potri.004G013400' => 'ptr', 'Potri.004G188100' => 'ptr', 'Potri.008G195500' => 'ptr', 'Potri.009G148800' => 'ptr', 'Potri.011G004700' => 'ptr', 'Pp3c17_22810' => 'ppa', 'Pp3c18_4480' => 'ppa', 'Pp3c19_13030' => 'ppa', 'Pp3c1_33620' => 'ppa', 'Pp3c2_9380' => 'ppa', 'PRCOL_00001023' => 'pco', 'Prupe.3G216300' => 'ppe', 'Prupe.4G019500' => 'ppe', 'Prupe.6G092500' => 'ppe', 'Prupe.6G119200' => 'ppe', 'Psat0s1945g0080' => 'psa', 'Psat0s4167g0040' => 'psa', 'Psat1g185800' => 'psa', 'Psat4g006440' => 'psa', 'Psat4g006480' => 'psa', 'Psat4g168120' => 'psa', 'Psat5g255680' => 'psa', 'Psat5g261760' => 'psa', 'Psat7g222120' => 'psa', 'PSO063G7252' => 'pso', 'PSO170G4778' => 'pso', 'PSO210G2249' => 'pso', 'PSO339G2411' => 'pso', 'PSO339G2457' => 'pso', 'PSO339G2854' => 'pso', 'PSO339G4288' => 'pso', 'PSO339G4615' => 'pso', 'PSO384G2796' => 'pso', 'PSO384G2940' => 'pso', 'PSO384G4227' => 'pso', 'PSO478G1425' => 'pso', 'PSO541G3863' => 'pso', 'PSO675G0507' => 'pso', 'PSO782G0338' => 'pso', 'PSO832G0644' => 'pso', 'QL01p013664' => 'qlo', 'QL01p036598' => 'qlo', 'QL05p072984' => 'qlo', 'QL08p005768' => 'qlo', 'QL08p032743' => 'qlo', 'QL93p0073_0439' => 'qlo', 'QL93p0073_0444' => 'qlo', 'RcHm_v2.0_Chr5g0002851' => 'rch', 'RcHm_v2.0_Chr5g0055201' => 'rch', 'RcHm_v2.0_Chr5g0061191' => 'rch', 'RcHm_v2.0_Chr7g0203231' => 'rch', 'Rhsim01G0208100' => 'rsi', 'Rhsim01G0208200' => 'rsi', 'Rhsim02G0106500' => 'rsi', 'Rhsim03G0107900' => 'rsi', 'Rhsim06G0163400' => 'rsi', 'Rhsim13G0105200' => 'rsi', 'Sabra04G0006300' => 'sbr', 'Sabra04G0127000' => 'sbr', 'Sabra08G0148700' => 'sbr', 'Sabra09G0117400' => 'sbr', 'SalBow1G3326' => 'sbo', 'SalBow3G3228' => 'sbo', 'SalBow6G1634' => 'sbo', 'SalBow6G3603' => 'sbo', 'SalBow6G5266' => 'sbo', 'SalBow7G2265' => 'sbo', 'SalBow8G0850' => 'sbo', 'SalBow8G2592' => 'sbo', 'Sc05g0009240' => 'sci', 'Sc12g0002300' => 'sci', 'Sc21g0000100' => 'sci', 'Sc21g0004720' => 'sci', 'Sed0002949' => 'sed', 'Sed0004114' => 'sed', 'Sed0004306' => 'sed', 'Sed0006172' => 'sed', 'Sed0008413' => 'sed', 'Sed0013809' => 'sed', 'Sed0019556' => 'sed', 'SEGI_03570' => 'sgi', 'SEGI_07859' => 'sgi', 'SEGI_15042' => 'sgi', 'SEGI_16263' => 'sgi', 'SEGI_16552' => 'sgi', 'SEGI_24331' => 'sgi', 'SEGI_27316' => 'sgi', 'SEGI_29521' => 'sgi', 'SEGI_41342' => 'sgi', 'SGA_v2.0_scaffold27G11617' => 'sas', 'SGA_v2.0_scaffold316G48428' => 'sas', 'SGA_v2.0_scaffold49G18261' => 'sas', 'SGA_v2.0_scaffold7G03831' => 'sas', 'SGA_v2.0_scaffold93G28359' => 'sas', 'SHI02210' => 'shi', 'SHI06028' => 'shi', 'SHI06321' => 'shi', 'SMO111G0012' => 'smo', 'SMO228G0080' => 'smo', 'SMO356G0756' => 'smo', 'Solyc02g080620.3' => 'sly', 'Solyc06g074530.1' => 'sly', 'Solyc11g066890.1' => 'sly', 'Solyc11g072520.3' => 'sly', 'Sopen02g025330' => 'spe', 'Sopen06g031000' => 'spe', 'Sopen09g008240' => 'spe', 'Sopen09g025210' => 'spe', 'Sopen11g026600' => 'spe', 'Sopen11g030170' => 'spe', 'Sp1g10420' => 'spa', 'Sp3g06570' => 'spa', 'Sp4g10660' => 'spa', 'Sp5g16460' => 'spa', 'Sp6g22710' => 'spa', 'TAR365G0112' => 'tar', 'TAR369G0717' => 'tar', 'TAR374G0976' => 'tar', 'TAR623G1128' => 'tar', 'TAR626G1937' => 'tar', 'TAR627G0123' => 'tar', 'TAR628G0305' => 'tar', 'TAR636G1176' => 'tar', 'TAR636G2442' => 'tar', 'THA.LOC104800556' => 'tha', 'THA.LOC104809501' => 'tha', 'THA.LOC104815126' => 'tha', 'THA.LOC104815732' => 'tha', 'THA.LOC104823528' => 'tha', 'Thecc.02G365600' => 'tca', 'Thecc.06G222300' => 'tca', 'Thecc.09G261800' => 'tca', 'Thecc.09G291400' => 'tca', 'Thhalv10003028m.g' => 'esa', 'Thhalv10007886m.g' => 'esa', 'Thhalv10016085m.g' => 'esa', 'Thhalv10016681m.g' => 'esa', 'Thhalv10020951m.g' => 'esa', 'TPR.G15598' => 'tpr', 'TPR.G29305' => 'tpr', 'TPR.G32395' => 'tpr', 'TPR.G36998' => 'tpr', 'TPR.G4227' => 'tpr', 'TWI18G1433' => 'twi', 'TWI31G0755' => 'twi', 'TWI38G0912' => 'twi', 'TWI75G1097' => 'twi', 'TWI75G1619' => 'twi', 'TWI79G1336' => 'twi', 'unitig_0.g943' => 'ugi', 'unitig_0.g944' => 'ugi', 'unitig_22.g6646' => 'ugi', 'unitig_37.g12681' => 'ugi', 'unitig_8.g3290' => 'ugi', 'vmacro03278' => 'vma', 'vmacro12197' => 'vma', 'vmacro14478' => 'vma', 'vmacro15787' => 'vma', 'vmacro15789' => 'vma', 'vmacro15790' => 'vma', 'vmacro15806' => 'vma', 'vmacro22907' => 'vma', 'vmacro22908' => 'vma', 'vmacro22909' => 'vma', 'vmacro23108' => 'vma', 'VMungo0540G0540' => 'vmu', 'VMungo0540G2468' => 'vmu', 'VMungo1080G0390' => 'vmu', 'VMungo1080G1165' => 'vmu', 'VMungo1127G0170' => 'vmu', 'VMungo1127G2099' => 'vmu', 'VMungo1215G3013' => 'vmu', 'Zm00001eb013110' => 'zma', 'Zm00001eb084260' => 'zma', 'Zm00001eb096110' => 'zma', 'Zm00001eb217510' => 'zma', 'Zm00001eb322550' => 'zma', 'Zm00001eb390770' => 'zma', 'Zm00001eb397170' => 'zma', 'Zm00001eb404610' => 'zma', 'Zm00001eb421790' => 'zma' ) $gf_id = 'HOM05D000911' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000911' ) $data_identifier = 'HOM05D000911' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 16, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 5, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 6, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 8, 'nnu' => (int) 16, 'oeu' => (int) 8, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 5, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 16, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421790' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000911', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27780' => 'bna', 'A03p35380' => 'bna', 'A04p21160' => 'bna', 'A05p40570' => 'bna', 'A06p26900' => 'bna', 'A08p33230' => 'bna', 'A09p65960' => 'bna', 'A10p18290' => 'bna', 'Aa31LG1G12990' => 'aar', 'Aa31LG1G2980' => 'aar', 'Aa31LG4G14320' => 'aar', 'Aa31LG7G11800' => 'aar', 'Aa31sc36G50' => 'aar', 'Aa31sc36G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3721' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5459' => 'aag', 'Actinidia03028' => 'ach', 'Actinidia03753' => 'ach', 'Actinidia04187' => 'ach', 'Actinidia05509' => 'ach', 'Actinidia24180' => 'ach', 'Actinidia26906' => 'ach', 'Actinidia37097' => 'ach', 'Actinidia38249' => 'ach', 'Ah.01g003470' => 'amhyb', 'Ah.01g004580' => 'amhyb', 'Ah.01g014850' => 'amhyb', 'Ah.01g016830' => 'amhyb', 'Ah.14g088000' => 'amhyb', 'AL1G22980' => 'aly', 'AL3G18990' => 'aly', 'AL4G22440' => 'aly', 'AL4G33180' => 'aly', 'AL5G22920' => 'aly', 'AL6G33660' => 'aly', 'AL8G20720' => 'aly', 'Aqoxy1G00935' => 'aox', 'Aqoxy1G02094' => 'aox', 'Aqoxy2G01239' => 'aox', 'Aqoxy4G01870' => 'aox', 'Aqoxy7G00450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.36ZVTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71EM27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5D6C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH3WRE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3NCM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RIM768' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YB5YRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z36GDV' => 'arhy', 'AT1G08250' => 'ath', 'AT1G11790' => 'ath', 'AT2G27820' => 'ath', 'AT3G07630' => 'ath', 'AT3G44720' => 'ath', 'AT5G22630' => 'ath', 'ATR0693G304' => 'atr', 'ATR0794G109' => 'atr', 'ATR0820G120' => 'atr', 'ATR1159G064' => 'atr', 'Atru.chr10.2239' => 'acertr', 'Atru.chr3.3371' => 'acertr', 'Atru.chr6.3202' => 'acertr', 'AUR62006499' => 'cqu', 'AUR62012718' => 'cqu', 'AUR62021938' => 'cqu', 'AUR62023932' => 'cqu', 'AUR62025034' => 'cqu', 'AUR62025035' => 'cqu', 'AUR62038307' => 'cqu', 'AUR62043466' => 'cqu', 'BcaB02g10748' => 'bca', 'BcaB03g13231' => 'bca', 'BcaB03g14689' => 'bca', 'BcaB05g22716' => 'bca', 'BcaB06g28172' => 'bca', 'BcaB08g36413' => 'bca', 'BcaC01g02186' => 'bca', 'BcaC01g04272' => 'bca', 'BcaC02g08080' => 'bca', 'BcaC02g08227' => 'bca', 'BcaC03g13901' => 'bca', 'BcaC04g19593' => 'bca', 'BcaC04g20874' => 'bca', 'BcaC05g29557' => 'bca', 'BcaC06g35505' => 'bca', 'BcaC07g41954' => 'bca', 'BcaC07g41955' => 'bca', 'BcaC07g41956' => 'bca', 'BcaC07g42519' => 'bca', 'BcaC07g42520' => 'bca', 'BcaC07g42523' => 'bca', 'BcaC07g42524' => 'bca', 'BcaC07g42525' => 'bca', 'BcaC08g47480' => 'bca', 'BcaC08g47481' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00530' => 'bna', 'BolC2t07178H' => 'bol', 'BolC3t16567H' => 'bol', 'BolC4t27234H' => 'bol', 'BolC5t29728H' => 'bol', 'BolC5t34622H' => 'bol', 'BolC6t40321H' => 'bol', 'BolC7t42028H' => 'bol', 'BolC8t49125H' => 'bol', 'BolC8t52538H' => 'bol', 'BolC8t52539H' => 'bol', 'BolC9t56681H' => 'bol', 'BolC9t58266H' => 'bol', 'BolSC21t60294H' => 'bol', 'BraA02t05670Z' => 'bra', 'BraA03t12716Z' => 'bra', 'BraA04t17685Z' => 'bra', 'BraA05t22788Z' => 'bra', 'BraA06t24032Z' => 'bra', 'BraA06t25625Z' => 'bra', 'BraA07t27930Z' => 'bra', 'BraA08t35242Z' => 'bra', 'BraA09t38609Z' => 'bra', 'BraA10t43905Z' => 'bra', 'C02p11060' => 'bna', 'C03p42990' => 'bna', 'C03p67310' => 'bna', 'C04p56990' => 'bna', 'C04p58660' => 'bna', 'C05p09890' => 'bna', 'C05p59680' => 'bna', 'C06p19830' => 'bna', 'C06p53040' => 'bna', 'C07p15230' => 'bna', 'C08p50070' => 'bna', 'C08p50090' => 'bna', 'C09p38330' => 'bna', 'C09p53940' => 'bna', 'CAN.G1014.1' => 'can', 'CAN.G644.30' => 'can', 'CAN.G84.47' => 'can', 'CAN.G919.8' => 'can', 'CANSAT54G0113' => 'cansat', 'CANSAT54G1286' => 'cansat', 'CANSAT64G1020' => 'cansat', 'CARHR008080' => 'chi', 'CARHR008090' => 'chi', 'CARHR012130' => 'chi', 'CARHR038390' => 'chi', 'CARHR082330' => 'chi', 'CARHR120520' => 'chi', 'CARHR151470' => 'chi', 'CARHR190950' => 'chi', 'Carub.0001s0760' => 'cru', 'Carub.0001s1146' => 'cru', 'Carub.0003s0721' => 'cru', 'Carub.0004s0858' => 'cru', 'Carub.0005s1040' => 'cru', 'Carub.0006s2035' => 'cru', 'Carub.0015s0005' => 'cru', 'Ca_01607_v3' => 'car', 'Ca_01677_v3' => 'car', 'Ca_06087_v3' => 'car', 'Ca_19238_v3' => 'car', 'Ca_19373_v3' => 'car', 'Ca_21079_v3' => 'car', 'CBR_g54016' => 'cbr', 'CBR_g54018' => 'cbr', 'CBR_g54020' => 'cbr', 'Cc01_g09780' => 'ccan', 'Cc01_g11680' => 'ccan', 'Cc02_g15610' => 'ccan', 'Cc05_g04350' => 'ccan', 'Cc09_g01580' => 'ccan', 'CDE01G0795' => 'cde', 'CDE02G2024' => 'cde', 'CDE02G2260' => 'cde', 'CDE02G4561' => 'cde', 'CDE05G2733' => 'cde', 'CDE05G3422' => 'cde', 'CDE06G2003' => 'cde', 'CDE08G0576' => 'cde', 'CDE09G0048' => 'cde', 'CDE11G0805' => 'cde', 'Cfa003644' => 'cfa', 'Cfa006290' => 'cfa', 'Cfa010080' => 'cfa', 'Cfa011376' => 'cfa', 'Cfa011576' => 'cfa', 'Cfa011577' => 'cfa', 'Cfa014389' => 'cfa', 'Ciclev10006044m.g' => 'ccl', 'Ciclev10006954m.g' => 'ccl', 'Ciclev10015131m.g' => 'ccl', 'Ciclev10015580m.g' => 'ccl', 'Ciclev10028359m.g' => 'ccl', 'Ciclev10028573m.g' => 'ccl', 'CiPaw.03G159300' => 'cil', 'CiPaw.04G115100' => 'cil', 'CiPaw.09G092800' => 'cil', 'CiPaw.10G071800' => 'cil', 'CiPaw.13G105800' => 'cil', 'CiPaw.13G141000' => 'cil', 'CiPaw.14G103400' => 'cil', 'ClCG01G012700' => 'cla', 'ClCG01G012720' => 'cla', 'ClCG01G021920' => 'cla', 'ClCG02G008870' => 'cla', 'ClCG02G020840' => 'cla', 'ClCG02G021930' => 'cla', 'COL.COLO4_19302' => 'col', 'COL.COLO4_25262' => 'col', 'COL.COLO4_31788' => 'col', 'Cpa.g.c34684' => 'cpa', 'Cpa.g.c36520.1' => 'cpa', 'Cpa.g.c45626' => 'cpa', 'Cpa.g.sc121.17' => 'cpa', 'Cpa.g.sc13.22' => 'cpa', 'Cpa.g.sc87.88' => 'cpa', 'Cre06.g261800' => 'cre', 'CsaV3_1G014500' => 'csa', 'CsaV3_1G014510' => 'csa', 'CsaV3_2G034880' => 'csa', 'CsaV3_6G014760' => 'csa', 'CsaV3_6G021500' => 'csa', 'CsaV3_6G048980' => 'csa', 'CSS0002511' => 'camsi', 'CSS0007556' => 'camsi', 'CSS0008532' => 'camsi', 'CSS0009709' => 'camsi', 'CSS0010486' => 'camsi', 'CSS0016768' => 'camsi', 'CSS0023512' => 'camsi', 'CSS0025341' => 'camsi', 'CSS0027999' => 'camsi', 'CSS0028944' => 'camsi', 'CSS0032292' => 'camsi', 'CSS0032464' => 'camsi', 'CSS0037153' => 'camsi', 'CSS0039256' => 'camsi', 'CSS0048392' => 'camsi', 'CSS0050458' => 'camsi', 'DCAR_004224' => 'dca', 'DCAR_006147' => 'dca', 'DCAR_006465' => 'dca', 'DCAR_008159' => 'dca', 'DCAR_012164' => 'dca', 'DCAR_019764' => 'dca', 'Dinv05418' => 'din', 'Dinv10839' => 'din', 'Dinv12521' => 'din', 'Dinv13900' => 'din', 'Dinv29426' => 'din', 'Duzib150G0263' => 'dzi', 'Duzib168G1178' => 'dzi', 'Duzib168G1924' => 'dzi', 'Duzib170G0299' => 'dzi', 'Duzib170G0813' => 'dzi', 'Duzib235G1128' => 'dzi', 'Duzib248G1060' => 'dzi', 'ECA232G1910' => 'eca', 'ECA233G4621' => 'eca', 'ECA238G1216' => 'eca', 'ECA238G1784' => 'eca', 'ECA248G1242' => 'eca', 'EL10Ac8g20071' => 'bvu', 'EL10Ac9g21086' => 'bvu', 'EL10Ac9g22407' => 'bvu', 'EL10Ac9g22412' => 'bvu', 'Eucgr.A01119' => 'egr', 'Eucgr.E04043' => 'egr', 'Eucgr.J00428' => 'egr', 'Eucgr.J00958' => 'egr', 'FAN11G3091' => 'fan', 'FAN11G3651' => 'fan', 'FAN16G2566' => 'fan', 'FAN21G3155' => 'fan', 'FAN21G3400' => 'fan', 'FAN21G3543' => 'fan', 'FAN25G0234' => 'fan', 'FAN25G1422' => 'fan', 'FAN25G3392' => 'fan', 'FvH4_3g01940' => 'fve', 'FvH4_3g29870' => 'fve', 'FvH4_3g33680' => 'fve', 'Glyma.09G004200' => 'gma', 'Glyma.11G151288' => 'gma', 'Glyma.11G189100' => 'gma', 'Glyma.12G072500' => 'gma', 'Glyma.12G085500' => 'gma', 'Glyma.12G181800' => 'gma', 'Glyma.12G193000' => 'gma', 'Glyma.13G309300' => 'gma', 'Glyma.13G319000' => 'gma', 'Glyma.17G012600' => 'gma', 'Gohir.A06G148600' => 'ghi', 'Gohir.A07G115800' => 'ghi', 'Gohir.A08G003600' => 'ghi', 'Gohir.A09G093300' => 'ghi', 'Gohir.A09G105400' => 'ghi', 'Gohir.A09G105500' => 'ghi', 'Gohir.D06G154600' => 'ghi', 'Gohir.D07G120200' => 'ghi', 'Gohir.D08G013900' => 'ghi', 'Gohir.D09G093100' => 'ghi', 'Gohir.D09G102200' => 'ghi', 'Gohir.D09G102300' => 'ghi', 'Gorai.001G129400' => 'gra', 'Gorai.004G008200' => 'gra', 'Gorai.006G109800' => 'gra', 'Gorai.006G119500' => 'gra', 'Gorai.006G121300' => 'gra', 'Gorai.010G180700' => 'gra', 'GSVIVG01012716001' => 'vvi', 'GSVIVG01025118001' => 'vvi', 'GSVIVG01030439001' => 'vvi', 'GSVIVG01031397001' => 'vvi', 'HanXRQChr01g0004201' => 'han', 'HanXRQChr02g0054941' => 'han', 'HanXRQChr05g0141811' => 'han', 'HanXRQChr07g0197751' => 'han', 'HanXRQChr11g0346691' => 'han', 'HanXRQChr13g0396971' => 'han', 'HanXRQChr14g0432951' => 'han', 'HanXRQChr14g0452001' => 'han', 'HanXRQChr15g0496681' => 'han', 'HanXRQChr17g0557491' => 'han', 'HanXRQChr17g0557501' => 'han', 'Haze_06809' => 'cav', 'Haze_12852' => 'cav', 'Haze_15850' => 'cav', 'Haze_23446' => 'cav', 'Haze_23942' => 'cav', 'Haze_23943' => 'cav', 'Hma1.2p1_0091F.1_g046450' => 'hma', 'Hma1.2p1_0128F.1_g059910' => 'hma', 'Hma1.2p1_0249F.1_g102260' => 'hma', 'Hma1.2p1_0453F.1_g156190' => 'hma', 'Hma1.2p1_0695F.1_g204380' => 'hma', 'Hma1.2p1_0749F.1_g212650' => 'hma', 'Hma1.2p1_2156F.1_g315420' => 'hma', 'Hma1.2p1_2686F.1_g326940' => 'hma', 'HPP92_006428' => 'vpl', 'HPP92_012069' => 'vpl', 'HPP92_014129' => 'vpl', 'HPP92_014133' => 'vpl', 'HPP92_017315' => 'vpl', 'HPP92_026445' => 'vpl', 'HPP92_026446' => 'vpl', 'Hund00774' => 'sun', 'Hund07682' => 'sun', 'Hund21413' => 'sun', 'Hund23462' => 'sun', 'Hund23463' => 'sun', 'Lalb_Chr03g0027911' => 'lal', 'Lalb_Chr13g0304271' => 'lal', 'Lalb_Chr19g0137471' => 'lal', 'Lalb_Chr22g0350651' => 'lal', 'Lalb_Chr24g0395151' => 'lal', 'Lj1A1231T40' => 'lonja', 'Lj1A221T48' => 'lonja', 'Lj1C924T12' => 'lonja', 'Lj2C993G6' => 'lonja', 'Lj3g0005790' => 'lja', 'Lj3g0015432' => 'lja', 'Lj3g0017722' => 'lja', 'Lj3g0018497' => 'lja', 'Lj4g0025071' => 'lja', 'Lsat_1_v5_gn_1_129680' => 'lsa', 'Lsat_1_v5_gn_2_25321' => 'lsa', 'Lsat_1_v5_gn_2_95461' => 'lsa', 'Lsat_1_v5_gn_4_159620' => 'lsa', 'Lsat_1_v5_gn_6_41301' => 'lsa', 'Lsat_1_v5_gn_6_74660' => 'lsa', 'Lsat_1_v5_gn_7_11520' => 'lsa', 'Lsat_1_v5_gn_9_67680' => 'lsa', 'Manes.04G008300' => 'mes', 'Manes.04G008400' => 'mes', 'Manes.04G026500' => 'mes', 'Manes.10G135300' => 'mes', 'Manes.11G157300' => 'mes', 'Manes.12G074000' => 'mes', 'Manes.16G006200' => 'mes', 'Manes.17G026400' => 'mes', 'Mapoly0024s0086' => 'mpo', 'Mapoly0024s0087' => 'mpo', 'Mapoly0071s0057' => 'mpo', 'Mapoly0204s0012' => 'mpo', 'MBI04_g37681_MAGBIO' => 'mbi', 'MBI05_g17779_MAGBIO' => 'mbi', 'MBI12_g31184_MAGBIO' => 'mbi', 'MBI17_g11083_MAGBIO' => 'mbi', 'MBI18_g03883_MAGBIO' => 'mbi', 'MBI18_g28940_MAGBIO' => 'mbi', 'MCO01G690' => 'mco', 'MD03G1109900' => 'mdo', 'MD03G1134800' => 'mdo', 'MD05G1348000' => 'mdo', 'MD10G1322400' => 'mdo', 'MD11G1123300' => 'mdo', 'MD11G1157600' => 'mdo', 'Medtr2g084875' => 'mtr', 'Medtr2g088130' => 'mtr', 'Medtr4g055310' => 'mtr', 'Medtr4g061070' => 'mtr', 'Medtr4g132250' => 'mtr', 'MELO3C004795.2' => 'cme', 'MELO3C004797.2' => 'cme', 'MELO3C007396.2' => 'cme', 'MELO3C019277.2' => 'cme', 'MELO3C021449.2' => 'cme', 'MELO3C025736.2' => 'cme', 'Migut.D02175' => 'egut', 'Migut.H01573' => 'egut', 'Migut.M01327' => 'egut', 'Migut.N02513' => 'egut', 'MSTRG.14638' => 'ama', 'MSTRG.18632' => 'ama', 'MSTRG.7203' => 'ama', 'Nitab4.5_0000533g0140' => 'nta', 'Nitab4.5_0000888g0150' => 'nta', 'Nitab4.5_0001453g0040' => 'nta', 'Nitab4.5_0002827g0090' => 'nta', 'Nitab4.5_0003082g0040' => 'nta', 'Nitab4.5_0007799g0040' => 'nta', 'Nitab4.5_0008983g0010' => 'nta', 'Nitab4.5_0009017g0020' => 'nta', 'Nn1g02132' => 'nnu', 'Nn1g03492' => 'nnu', 'Nn1g03493' => 'nnu', 'Nn1g03494' => 'nnu', 'Nn1g07164' => 'nnu', 'Nn1g07291' => 'nnu', 'Nn2g10655' => 'nnu', 'Nn2g11652' => 'nnu', 'Nn2g14008' => 'nnu', 'Nn3g17476' => 'nnu', 'Nn3g17477' => 'nnu', 'Nn4g22370' => 'nnu', 'Nn4g25255' => 'nnu', 'Nn5g27755' => 'nnu', 'Nn6g34260' => 'nnu', 'Nn6g35041' => 'nnu', 'Oeu005924.1' => 'oeu', 'Oeu008383.1' => 'oeu', 'Oeu014928.1' => 'oeu', 'Oeu019889.1' => 'oeu', 'Oeu022271.1' => 'oeu', 'Oeu025271.1' => 'oeu', 'Oeu036302.1' => 'oeu', 'Oeu044100.1' => 'oeu', 'Os01g0528300' => 'osa', 'Os03g0286200' => 'osa', 'Os04g0406600' => 'osa', 'Os07g0512000' => 'osa', 'Os07g0694600' => 'osa', 'Os08g0411000' => 'osa', 'Os09g0565700' => 'osa', 'Os09g0566050' => 'osa', 'Os10g0523700' => 'osa', 'Peaxi162Scf00002g00514' => 'pax', 'Peaxi162Scf00047g01817' => 'pax', 'Peaxi162Scf00114g00001' => 'pax', 'Peaxi162Scf00147g00613' => 'pax', 'Peaxi162Scf00389g00425' => 'pax', 'PGR042G1139' => 'pgr', 'PGR042G3273' => 'pgr', 'PGR102G2180' => 'pgr', 'PGR119G0234' => 'pgr', 'PGR119G0668' => 'pgr', 'PGSC0003DMG400007122' => 'stu', 'PGSC0003DMG400016478' => 'stu', 'PGSC0003DMG400025374' => 'stu', 'PGSC0003DMG400026536' => 'stu', 'Phvul.003G079600' => 'pvu', 'Phvul.005G115600' => 'pvu', 'Phvul.005G127100' => 'pvu', 'Phvul.006G149500' => 'pvu', 'Phvul.006G149600' => 'pvu', 'Phvul.011G071800' => 'pvu', 'Phvul.011G090400' => 'pvu', 'Potri.004G013400' => 'ptr', 'Potri.004G188100' => 'ptr', 'Potri.008G195500' => 'ptr', 'Potri.009G148800' => 'ptr', 'Potri.011G004700' => 'ptr', 'Pp3c17_22810' => 'ppa', 'Pp3c18_4480' => 'ppa', 'Pp3c19_13030' => 'ppa', 'Pp3c1_33620' => 'ppa', 'Pp3c2_9380' => 'ppa', 'PRCOL_00001023' => 'pco', 'Prupe.3G216300' => 'ppe', 'Prupe.4G019500' => 'ppe', 'Prupe.6G092500' => 'ppe', 'Prupe.6G119200' => 'ppe', 'Psat0s1945g0080' => 'psa', 'Psat0s4167g0040' => 'psa', 'Psat1g185800' => 'psa', 'Psat4g006440' => 'psa', 'Psat4g006480' => 'psa', 'Psat4g168120' => 'psa', 'Psat5g255680' => 'psa', 'Psat5g261760' => 'psa', 'Psat7g222120' => 'psa', 'PSO063G7252' => 'pso', 'PSO170G4778' => 'pso', 'PSO210G2249' => 'pso', 'PSO339G2411' => 'pso', 'PSO339G2457' => 'pso', 'PSO339G2854' => 'pso', 'PSO339G4288' => 'pso', 'PSO339G4615' => 'pso', 'PSO384G2796' => 'pso', 'PSO384G2940' => 'pso', 'PSO384G4227' => 'pso', 'PSO478G1425' => 'pso', 'PSO541G3863' => 'pso', 'PSO675G0507' => 'pso', 'PSO782G0338' => 'pso', 'PSO832G0644' => 'pso', 'QL01p013664' => 'qlo', 'QL01p036598' => 'qlo', 'QL05p072984' => 'qlo', 'QL08p005768' => 'qlo', 'QL08p032743' => 'qlo', 'QL93p0073_0439' => 'qlo', 'QL93p0073_0444' => 'qlo', 'RcHm_v2.0_Chr5g0002851' => 'rch', 'RcHm_v2.0_Chr5g0055201' => 'rch', 'RcHm_v2.0_Chr5g0061191' => 'rch', 'RcHm_v2.0_Chr7g0203231' => 'rch', 'Rhsim01G0208100' => 'rsi', 'Rhsim01G0208200' => 'rsi', 'Rhsim02G0106500' => 'rsi', 'Rhsim03G0107900' => 'rsi', 'Rhsim06G0163400' => 'rsi', 'Rhsim13G0105200' => 'rsi', 'Sabra04G0006300' => 'sbr', 'Sabra04G0127000' => 'sbr', 'Sabra08G0148700' => 'sbr', 'Sabra09G0117400' => 'sbr', 'SalBow1G3326' => 'sbo', 'SalBow3G3228' => 'sbo', 'SalBow6G1634' => 'sbo', 'SalBow6G3603' => 'sbo', 'SalBow6G5266' => 'sbo', 'SalBow7G2265' => 'sbo', 'SalBow8G0850' => 'sbo', 'SalBow8G2592' => 'sbo', 'Sc05g0009240' => 'sci', 'Sc12g0002300' => 'sci', 'Sc21g0000100' => 'sci', 'Sc21g0004720' => 'sci', 'Sed0002949' => 'sed', 'Sed0004114' => 'sed', 'Sed0004306' => 'sed', 'Sed0006172' => 'sed', 'Sed0008413' => 'sed', 'Sed0013809' => 'sed', 'Sed0019556' => 'sed', 'SEGI_03570' => 'sgi', 'SEGI_07859' => 'sgi', 'SEGI_15042' => 'sgi', 'SEGI_16263' => 'sgi', 'SEGI_16552' => 'sgi', 'SEGI_24331' => 'sgi', 'SEGI_27316' => 'sgi', 'SEGI_29521' => 'sgi', 'SEGI_41342' => 'sgi', 'SGA_v2.0_scaffold27G11617' => 'sas', 'SGA_v2.0_scaffold316G48428' => 'sas', 'SGA_v2.0_scaffold49G18261' => 'sas', 'SGA_v2.0_scaffold7G03831' => 'sas', 'SGA_v2.0_scaffold93G28359' => 'sas', 'SHI02210' => 'shi', 'SHI06028' => 'shi', 'SHI06321' => 'shi', 'SMO111G0012' => 'smo', 'SMO228G0080' => 'smo', 'SMO356G0756' => 'smo', 'Solyc02g080620.3' => 'sly', 'Solyc06g074530.1' => 'sly', 'Solyc11g066890.1' => 'sly', 'Solyc11g072520.3' => 'sly', 'Sopen02g025330' => 'spe', 'Sopen06g031000' => 'spe', 'Sopen09g008240' => 'spe', 'Sopen09g025210' => 'spe', 'Sopen11g026600' => 'spe', 'Sopen11g030170' => 'spe', 'Sp1g10420' => 'spa', 'Sp3g06570' => 'spa', 'Sp4g10660' => 'spa', 'Sp5g16460' => 'spa', 'Sp6g22710' => 'spa', 'TAR365G0112' => 'tar', 'TAR369G0717' => 'tar', 'TAR374G0976' => 'tar', 'TAR623G1128' => 'tar', 'TAR626G1937' => 'tar', 'TAR627G0123' => 'tar', 'TAR628G0305' => 'tar', 'TAR636G1176' => 'tar', 'TAR636G2442' => 'tar', 'THA.LOC104800556' => 'tha', 'THA.LOC104809501' => 'tha', 'THA.LOC104815126' => 'tha', 'THA.LOC104815732' => 'tha', 'THA.LOC104823528' => 'tha', 'Thecc.02G365600' => 'tca', 'Thecc.06G222300' => 'tca', 'Thecc.09G261800' => 'tca', 'Thecc.09G291400' => 'tca', 'Thhalv10003028m.g' => 'esa', 'Thhalv10007886m.g' => 'esa', 'Thhalv10016085m.g' => 'esa', 'Thhalv10016681m.g' => 'esa', 'Thhalv10020951m.g' => 'esa', 'TPR.G15598' => 'tpr', 'TPR.G29305' => 'tpr', 'TPR.G32395' => 'tpr', 'TPR.G36998' => 'tpr', 'TPR.G4227' => 'tpr', 'TWI18G1433' => 'twi', 'TWI31G0755' => 'twi', 'TWI38G0912' => 'twi', 'TWI75G1097' => 'twi', 'TWI75G1619' => 'twi', 'TWI79G1336' => 'twi', 'unitig_0.g943' => 'ugi', 'unitig_0.g944' => 'ugi', 'unitig_22.g6646' => 'ugi', 'unitig_37.g12681' => 'ugi', 'unitig_8.g3290' => 'ugi', 'vmacro03278' => 'vma', 'vmacro12197' => 'vma', 'vmacro14478' => 'vma', 'vmacro15787' => 'vma', 'vmacro15789' => 'vma', 'vmacro15790' => 'vma', 'vmacro15806' => 'vma', 'vmacro22907' => 'vma', 'vmacro22908' => 'vma', 'vmacro22909' => 'vma', 'vmacro23108' => 'vma', 'VMungo0540G0540' => 'vmu', 'VMungo0540G2468' => 'vmu', 'VMungo1080G0390' => 'vmu', 'VMungo1080G1165' => 'vmu', 'VMungo1127G0170' => 'vmu', 'VMungo1127G2099' => 'vmu', 'VMungo1215G3013' => 'vmu', 'Zm00001eb013110' => 'zma', 'Zm00001eb084260' => 'zma', 'Zm00001eb096110' => 'zma', 'Zm00001eb217510' => 'zma', 'Zm00001eb322550' => 'zma', 'Zm00001eb390770' => 'zma', 'Zm00001eb397170' => 'zma', 'Zm00001eb404610' => 'zma', 'Zm00001eb421790' => 'zma' ), 'gf_id' => 'HOM05D000911', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000911' ), 'data_identifier' => 'HOM05D000911', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000911', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27780' => 'bna', 'A03p35380' => 'bna', 'A04p21160' => 'bna', 'A05p40570' => 'bna', 'A06p26900' => 'bna', 'A08p33230' => 'bna', 'A09p65960' => 'bna', 'A10p18290' => 'bna', 'Aa31LG1G12990' => 'aar', 'Aa31LG1G2980' => 'aar', 'Aa31LG4G14320' => 'aar', 'Aa31LG7G11800' => 'aar', 'Aa31sc36G50' => 'aar', 'Aa31sc36G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3721' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5459' => 'aag', 'Actinidia03028' => 'ach', 'Actinidia03753' => 'ach', 'Actinidia04187' => 'ach', 'Actinidia05509' => 'ach', 'Actinidia24180' => 'ach', 'Actinidia26906' => 'ach', 'Actinidia37097' => 'ach', 'Actinidia38249' => 'ach', 'Ah.01g003470' => 'amhyb', 'Ah.01g004580' => 'amhyb', 'Ah.01g014850' => 'amhyb', 'Ah.01g016830' => 'amhyb', 'Ah.14g088000' => 'amhyb', 'AL1G22980' => 'aly', 'AL3G18990' => 'aly', 'AL4G22440' => 'aly', 'AL4G33180' => 'aly', 'AL5G22920' => 'aly', 'AL6G33660' => 'aly', 'AL8G20720' => 'aly', 'Aqoxy1G00935' => 'aox', 'Aqoxy1G02094' => 'aox', 'Aqoxy2G01239' => 'aox', 'Aqoxy4G01870' => 'aox', 'Aqoxy7G00450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.36ZVTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71EM27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5D6C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH3WRE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3NCM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RIM768' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YB5YRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z36GDV' => 'arhy', 'AT1G08250' => 'ath', 'AT1G11790' => 'ath', 'AT2G27820' => 'ath', 'AT3G07630' => 'ath', 'AT3G44720' => 'ath', 'AT5G22630' => 'ath', 'ATR0693G304' => 'atr', 'ATR0794G109' => 'atr', 'ATR0820G120' => 'atr', 'ATR1159G064' => 'atr', 'Atru.chr10.2239' => 'acertr', 'Atru.chr3.3371' => 'acertr', 'Atru.chr6.3202' => 'acertr', 'AUR62006499' => 'cqu', 'AUR62012718' => 'cqu', 'AUR62021938' => 'cqu', 'AUR62023932' => 'cqu', 'AUR62025034' => 'cqu', 'AUR62025035' => 'cqu', 'AUR62038307' => 'cqu', 'AUR62043466' => 'cqu', 'BcaB02g10748' => 'bca', 'BcaB03g13231' => 'bca', 'BcaB03g14689' => 'bca', 'BcaB05g22716' => 'bca', 'BcaB06g28172' => 'bca', 'BcaB08g36413' => 'bca', 'BcaC01g02186' => 'bca', 'BcaC01g04272' => 'bca', 'BcaC02g08080' => 'bca', 'BcaC02g08227' => 'bca', 'BcaC03g13901' => 'bca', 'BcaC04g19593' => 'bca', 'BcaC04g20874' => 'bca', 'BcaC05g29557' => 'bca', 'BcaC06g35505' => 'bca', 'BcaC07g41954' => 'bca', 'BcaC07g41955' => 'bca', 'BcaC07g41956' => 'bca', 'BcaC07g42519' => 'bca', 'BcaC07g42520' => 'bca', 'BcaC07g42523' => 'bca', 'BcaC07g42524' => 'bca', 'BcaC07g42525' => 'bca', 'BcaC08g47480' => 'bca', 'BcaC08g47481' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00530' => 'bna', 'BolC2t07178H' => 'bol', 'BolC3t16567H' => 'bol', 'BolC4t27234H' => 'bol', 'BolC5t29728H' => 'bol', 'BolC5t34622H' => 'bol', 'BolC6t40321H' => 'bol', 'BolC7t42028H' => 'bol', 'BolC8t49125H' => 'bol', 'BolC8t52538H' => 'bol', 'BolC8t52539H' => 'bol', 'BolC9t56681H' => 'bol', 'BolC9t58266H' => 'bol', 'BolSC21t60294H' => 'bol', 'BraA02t05670Z' => 'bra', 'BraA03t12716Z' => 'bra', 'BraA04t17685Z' => 'bra', 'BraA05t22788Z' => 'bra', 'BraA06t24032Z' => 'bra', 'BraA06t25625Z' => 'bra', 'BraA07t27930Z' => 'bra', 'BraA08t35242Z' => 'bra', 'BraA09t38609Z' => 'bra', 'BraA10t43905Z' => 'bra', 'C02p11060' => 'bna', 'C03p42990' => 'bna', 'C03p67310' => 'bna', 'C04p56990' => 'bna', 'C04p58660' => 'bna', 'C05p09890' => 'bna', 'C05p59680' => 'bna', 'C06p19830' => 'bna', 'C06p53040' => 'bna', 'C07p15230' => 'bna', 'C08p50070' => 'bna', 'C08p50090' => 'bna', 'C09p38330' => 'bna', 'C09p53940' => 'bna', 'CAN.G1014.1' => 'can', 'CAN.G644.30' => 'can', 'CAN.G84.47' => 'can', 'CAN.G919.8' => 'can', 'CANSAT54G0113' => 'cansat', 'CANSAT54G1286' => 'cansat', 'CANSAT64G1020' => 'cansat', 'CARHR008080' => 'chi', 'CARHR008090' => 'chi', 'CARHR012130' => 'chi', 'CARHR038390' => 'chi', 'CARHR082330' => 'chi', 'CARHR120520' => 'chi', 'CARHR151470' => 'chi', 'CARHR190950' => 'chi', 'Carub.0001s0760' => 'cru', 'Carub.0001s1146' => 'cru', 'Carub.0003s0721' => 'cru', 'Carub.0004s0858' => 'cru', 'Carub.0005s1040' => 'cru', 'Carub.0006s2035' => 'cru', 'Carub.0015s0005' => 'cru', 'Ca_01607_v3' => 'car', 'Ca_01677_v3' => 'car', 'Ca_06087_v3' => 'car', 'Ca_19238_v3' => 'car', 'Ca_19373_v3' => 'car', 'Ca_21079_v3' => 'car', 'CBR_g54016' => 'cbr', 'CBR_g54018' => 'cbr', 'CBR_g54020' => 'cbr', 'Cc01_g09780' => 'ccan', 'Cc01_g11680' => 'ccan', 'Cc02_g15610' => 'ccan', 'Cc05_g04350' => 'ccan', 'Cc09_g01580' => 'ccan', 'CDE01G0795' => 'cde', 'CDE02G2024' => 'cde', 'CDE02G2260' => 'cde', 'CDE02G4561' => 'cde', 'CDE05G2733' => 'cde', 'CDE05G3422' => 'cde', 'CDE06G2003' => 'cde', 'CDE08G0576' => 'cde', 'CDE09G0048' => 'cde', 'CDE11G0805' => 'cde', 'Cfa003644' => 'cfa', 'Cfa006290' => 'cfa', 'Cfa010080' => 'cfa', 'Cfa011376' => 'cfa', 'Cfa011576' => 'cfa', 'Cfa011577' => 'cfa', 'Cfa014389' => 'cfa', 'Ciclev10006044m.g' => 'ccl', 'Ciclev10006954m.g' => 'ccl', 'Ciclev10015131m.g' => 'ccl', 'Ciclev10015580m.g' => 'ccl', 'Ciclev10028359m.g' => 'ccl', 'Ciclev10028573m.g' => 'ccl', 'CiPaw.03G159300' => 'cil', 'CiPaw.04G115100' => 'cil', 'CiPaw.09G092800' => 'cil', 'CiPaw.10G071800' => 'cil', 'CiPaw.13G105800' => 'cil', 'CiPaw.13G141000' => 'cil', 'CiPaw.14G103400' => 'cil', 'ClCG01G012700' => 'cla', 'ClCG01G012720' => 'cla', 'ClCG01G021920' => 'cla', 'ClCG02G008870' => 'cla', 'ClCG02G020840' => 'cla', 'ClCG02G021930' => 'cla', 'COL.COLO4_19302' => 'col', 'COL.COLO4_25262' => 'col', 'COL.COLO4_31788' => 'col', 'Cpa.g.c34684' => 'cpa', 'Cpa.g.c36520.1' => 'cpa', 'Cpa.g.c45626' => 'cpa', 'Cpa.g.sc121.17' => 'cpa', 'Cpa.g.sc13.22' => 'cpa', 'Cpa.g.sc87.88' => 'cpa', 'Cre06.g261800' => 'cre', 'CsaV3_1G014500' => 'csa', 'CsaV3_1G014510' => 'csa', 'CsaV3_2G034880' => 'csa', 'CsaV3_6G014760' => 'csa', 'CsaV3_6G021500' => 'csa', 'CsaV3_6G048980' => 'csa', 'CSS0002511' => 'camsi', 'CSS0007556' => 'camsi', 'CSS0008532' => 'camsi', 'CSS0009709' => 'camsi', 'CSS0010486' => 'camsi', 'CSS0016768' => 'camsi', 'CSS0023512' => 'camsi', 'CSS0025341' => 'camsi', 'CSS0027999' => 'camsi', 'CSS0028944' => 'camsi', 'CSS0032292' => 'camsi', 'CSS0032464' => 'camsi', 'CSS0037153' => 'camsi', 'CSS0039256' => 'camsi', 'CSS0048392' => 'camsi', 'CSS0050458' => 'camsi', 'DCAR_004224' => 'dca', 'DCAR_006147' => 'dca', 'DCAR_006465' => 'dca', 'DCAR_008159' => 'dca', 'DCAR_012164' => 'dca', 'DCAR_019764' => 'dca', 'Dinv05418' => 'din', 'Dinv10839' => 'din', 'Dinv12521' => 'din', 'Dinv13900' => 'din', 'Dinv29426' => 'din', 'Duzib150G0263' => 'dzi', 'Duzib168G1178' => 'dzi', 'Duzib168G1924' => 'dzi', 'Duzib170G0299' => 'dzi', 'Duzib170G0813' => 'dzi', 'Duzib235G1128' => 'dzi', 'Duzib248G1060' => 'dzi', 'ECA232G1910' => 'eca', 'ECA233G4621' => 'eca', 'ECA238G1216' => 'eca', 'ECA238G1784' => 'eca', 'ECA248G1242' => 'eca', 'EL10Ac8g20071' => 'bvu', 'EL10Ac9g21086' => 'bvu', 'EL10Ac9g22407' => 'bvu', 'EL10Ac9g22412' => 'bvu', 'Eucgr.A01119' => 'egr', 'Eucgr.E04043' => 'egr', 'Eucgr.J00428' => 'egr', 'Eucgr.J00958' => 'egr', 'FAN11G3091' => 'fan', 'FAN11G3651' => 'fan', 'FAN16G2566' => 'fan', 'FAN21G3155' => 'fan', 'FAN21G3400' => 'fan', 'FAN21G3543' => 'fan', 'FAN25G0234' => 'fan', 'FAN25G1422' => 'fan', 'FAN25G3392' => 'fan', 'FvH4_3g01940' => 'fve', 'FvH4_3g29870' => 'fve', 'FvH4_3g33680' => 'fve', 'Glyma.09G004200' => 'gma', 'Glyma.11G151288' => 'gma', 'Glyma.11G189100' => 'gma', 'Glyma.12G072500' => 'gma', 'Glyma.12G085500' => 'gma', 'Glyma.12G181800' => 'gma', 'Glyma.12G193000' => 'gma', 'Glyma.13G309300' => 'gma', 'Glyma.13G319000' => 'gma', 'Glyma.17G012600' => 'gma', 'Gohir.A06G148600' => 'ghi', 'Gohir.A07G115800' => 'ghi', 'Gohir.A08G003600' => 'ghi', 'Gohir.A09G093300' => 'ghi', 'Gohir.A09G105400' => 'ghi', 'Gohir.A09G105500' => 'ghi', 'Gohir.D06G154600' => 'ghi', 'Gohir.D07G120200' => 'ghi', 'Gohir.D08G013900' => 'ghi', 'Gohir.D09G093100' => 'ghi', 'Gohir.D09G102200' => 'ghi', 'Gohir.D09G102300' => 'ghi', 'Gorai.001G129400' => 'gra', 'Gorai.004G008200' => 'gra', 'Gorai.006G109800' => 'gra', 'Gorai.006G119500' => 'gra', 'Gorai.006G121300' => 'gra', 'Gorai.010G180700' => 'gra', 'GSVIVG01012716001' => 'vvi', 'GSVIVG01025118001' => 'vvi', 'GSVIVG01030439001' => 'vvi', 'GSVIVG01031397001' => 'vvi', 'HanXRQChr01g0004201' => 'han', 'HanXRQChr02g0054941' => 'han', 'HanXRQChr05g0141811' => 'han', 'HanXRQChr07g0197751' => 'han', 'HanXRQChr11g0346691' => 'han', 'HanXRQChr13g0396971' => 'han', 'HanXRQChr14g0432951' => 'han', 'HanXRQChr14g0452001' => 'han', 'HanXRQChr15g0496681' => 'han', 'HanXRQChr17g0557491' => 'han', 'HanXRQChr17g0557501' => 'han', 'Haze_06809' => 'cav', 'Haze_12852' => 'cav', 'Haze_15850' => 'cav', 'Haze_23446' => 'cav', 'Haze_23942' => 'cav', 'Haze_23943' => 'cav', 'Hma1.2p1_0091F.1_g046450' => 'hma', 'Hma1.2p1_0128F.1_g059910' => 'hma', 'Hma1.2p1_0249F.1_g102260' => 'hma', 'Hma1.2p1_0453F.1_g156190' => 'hma', 'Hma1.2p1_0695F.1_g204380' => 'hma', 'Hma1.2p1_0749F.1_g212650' => 'hma', 'Hma1.2p1_2156F.1_g315420' => 'hma', 'Hma1.2p1_2686F.1_g326940' => 'hma', 'HPP92_006428' => 'vpl', 'HPP92_012069' => 'vpl', 'HPP92_014129' => 'vpl', 'HPP92_014133' => 'vpl', 'HPP92_017315' => 'vpl', 'HPP92_026445' => 'vpl', 'HPP92_026446' => 'vpl', 'Hund00774' => 'sun', 'Hund07682' => 'sun', 'Hund21413' => 'sun', 'Hund23462' => 'sun', 'Hund23463' => 'sun', 'Lalb_Chr03g0027911' => 'lal', 'Lalb_Chr13g0304271' => 'lal', 'Lalb_Chr19g0137471' => 'lal', 'Lalb_Chr22g0350651' => 'lal', 'Lalb_Chr24g0395151' => 'lal', 'Lj1A1231T40' => 'lonja', 'Lj1A221T48' => 'lonja', 'Lj1C924T12' => 'lonja', 'Lj2C993G6' => 'lonja', 'Lj3g0005790' => 'lja', 'Lj3g0015432' => 'lja', 'Lj3g0017722' => 'lja', 'Lj3g0018497' => 'lja', 'Lj4g0025071' => 'lja', 'Lsat_1_v5_gn_1_129680' => 'lsa', 'Lsat_1_v5_gn_2_25321' => 'lsa', 'Lsat_1_v5_gn_2_95461' => 'lsa', 'Lsat_1_v5_gn_4_159620' => 'lsa', 'Lsat_1_v5_gn_6_41301' => 'lsa', 'Lsat_1_v5_gn_6_74660' => 'lsa', 'Lsat_1_v5_gn_7_11520' => 'lsa', 'Lsat_1_v5_gn_9_67680' => 'lsa', 'Manes.04G008300' => 'mes', 'Manes.04G008400' => 'mes', 'Manes.04G026500' => 'mes', 'Manes.10G135300' => 'mes', 'Manes.11G157300' => 'mes', 'Manes.12G074000' => 'mes', 'Manes.16G006200' => 'mes', 'Manes.17G026400' => 'mes', 'Mapoly0024s0086' => 'mpo', 'Mapoly0024s0087' => 'mpo', 'Mapoly0071s0057' => 'mpo', 'Mapoly0204s0012' => 'mpo', 'MBI04_g37681_MAGBIO' => 'mbi', 'MBI05_g17779_MAGBIO' => 'mbi', 'MBI12_g31184_MAGBIO' => 'mbi', 'MBI17_g11083_MAGBIO' => 'mbi', 'MBI18_g03883_MAGBIO' => 'mbi', 'MBI18_g28940_MAGBIO' => 'mbi', 'MCO01G690' => 'mco', 'MD03G1109900' => 'mdo', 'MD03G1134800' => 'mdo', 'MD05G1348000' => 'mdo', 'MD10G1322400' => 'mdo', 'MD11G1123300' => 'mdo', 'MD11G1157600' => 'mdo', 'Medtr2g084875' => 'mtr', 'Medtr2g088130' => 'mtr', 'Medtr4g055310' => 'mtr', 'Medtr4g061070' => 'mtr', 'Medtr4g132250' => 'mtr', 'MELO3C004795.2' => 'cme', 'MELO3C004797.2' => 'cme', 'MELO3C007396.2' => 'cme', 'MELO3C019277.2' => 'cme', 'MELO3C021449.2' => 'cme', 'MELO3C025736.2' => 'cme', 'Migut.D02175' => 'egut', 'Migut.H01573' => 'egut', 'Migut.M01327' => 'egut', 'Migut.N02513' => 'egut', 'MSTRG.14638' => 'ama', 'MSTRG.18632' => 'ama', 'MSTRG.7203' => 'ama', 'Nitab4.5_0000533g0140' => 'nta', 'Nitab4.5_0000888g0150' => 'nta', 'Nitab4.5_0001453g0040' => 'nta', 'Nitab4.5_0002827g0090' => 'nta', 'Nitab4.5_0003082g0040' => 'nta', 'Nitab4.5_0007799g0040' => 'nta', 'Nitab4.5_0008983g0010' => 'nta', 'Nitab4.5_0009017g0020' => 'nta', 'Nn1g02132' => 'nnu', 'Nn1g03492' => 'nnu', 'Nn1g03493' => 'nnu', 'Nn1g03494' => 'nnu', 'Nn1g07164' => 'nnu', 'Nn1g07291' => 'nnu', 'Nn2g10655' => 'nnu', 'Nn2g11652' => 'nnu', 'Nn2g14008' => 'nnu', 'Nn3g17476' => 'nnu', 'Nn3g17477' => 'nnu', 'Nn4g22370' => 'nnu', 'Nn4g25255' => 'nnu', 'Nn5g27755' => 'nnu', 'Nn6g34260' => 'nnu', 'Nn6g35041' => 'nnu', 'Oeu005924.1' => 'oeu', 'Oeu008383.1' => 'oeu', 'Oeu014928.1' => 'oeu', 'Oeu019889.1' => 'oeu', 'Oeu022271.1' => 'oeu', 'Oeu025271.1' => 'oeu', 'Oeu036302.1' => 'oeu', 'Oeu044100.1' => 'oeu', 'Os01g0528300' => 'osa', 'Os03g0286200' => 'osa', 'Os04g0406600' => 'osa', 'Os07g0512000' => 'osa', 'Os07g0694600' => 'osa', 'Os08g0411000' => 'osa', 'Os09g0565700' => 'osa', 'Os09g0566050' => 'osa', 'Os10g0523700' => 'osa', 'Peaxi162Scf00002g00514' => 'pax', 'Peaxi162Scf00047g01817' => 'pax', 'Peaxi162Scf00114g00001' => 'pax', 'Peaxi162Scf00147g00613' => 'pax', 'Peaxi162Scf00389g00425' => 'pax', 'PGR042G1139' => 'pgr', 'PGR042G3273' => 'pgr', 'PGR102G2180' => 'pgr', 'PGR119G0234' => 'pgr', 'PGR119G0668' => 'pgr', 'PGSC0003DMG400007122' => 'stu', 'PGSC0003DMG400016478' => 'stu', 'PGSC0003DMG400025374' => 'stu', 'PGSC0003DMG400026536' => 'stu', 'Phvul.003G079600' => 'pvu', 'Phvul.005G115600' => 'pvu', 'Phvul.005G127100' => 'pvu', 'Phvul.006G149500' => 'pvu', 'Phvul.006G149600' => 'pvu', 'Phvul.011G071800' => 'pvu', 'Phvul.011G090400' => 'pvu', 'Potri.004G013400' => 'ptr', 'Potri.004G188100' => 'ptr', 'Potri.008G195500' => 'ptr', 'Potri.009G148800' => 'ptr', 'Potri.011G004700' => 'ptr', 'Pp3c17_22810' => 'ppa', 'Pp3c18_4480' => 'ppa', 'Pp3c19_13030' => 'ppa', 'Pp3c1_33620' => 'ppa', 'Pp3c2_9380' => 'ppa', 'PRCOL_00001023' => 'pco', 'Prupe.3G216300' => 'ppe', 'Prupe.4G019500' => 'ppe', 'Prupe.6G092500' => 'ppe', 'Prupe.6G119200' => 'ppe', 'Psat0s1945g0080' => 'psa', 'Psat0s4167g0040' => 'psa', 'Psat1g185800' => 'psa', 'Psat4g006440' => 'psa', 'Psat4g006480' => 'psa', 'Psat4g168120' => 'psa', 'Psat5g255680' => 'psa', 'Psat5g261760' => 'psa', 'Psat7g222120' => 'psa', 'PSO063G7252' => 'pso', 'PSO170G4778' => 'pso', 'PSO210G2249' => 'pso', 'PSO339G2411' => 'pso', 'PSO339G2457' => 'pso', 'PSO339G2854' => 'pso', 'PSO339G4288' => 'pso', 'PSO339G4615' => 'pso', 'PSO384G2796' => 'pso', 'PSO384G2940' => 'pso', 'PSO384G4227' => 'pso', 'PSO478G1425' => 'pso', 'PSO541G3863' => 'pso', 'PSO675G0507' => 'pso', 'PSO782G0338' => 'pso', 'PSO832G0644' => 'pso', 'QL01p013664' => 'qlo', 'QL01p036598' => 'qlo', 'QL05p072984' => 'qlo', 'QL08p005768' => 'qlo', 'QL08p032743' => 'qlo', 'QL93p0073_0439' => 'qlo', 'QL93p0073_0444' => 'qlo', 'RcHm_v2.0_Chr5g0002851' => 'rch', 'RcHm_v2.0_Chr5g0055201' => 'rch', 'RcHm_v2.0_Chr5g0061191' => 'rch', 'RcHm_v2.0_Chr7g0203231' => 'rch', 'Rhsim01G0208100' => 'rsi', 'Rhsim01G0208200' => 'rsi', 'Rhsim02G0106500' => 'rsi', 'Rhsim03G0107900' => 'rsi', 'Rhsim06G0163400' => 'rsi', 'Rhsim13G0105200' => 'rsi', 'Sabra04G0006300' => 'sbr', 'Sabra04G0127000' => 'sbr', 'Sabra08G0148700' => 'sbr', 'Sabra09G0117400' => 'sbr', 'SalBow1G3326' => 'sbo', 'SalBow3G3228' => 'sbo', 'SalBow6G1634' => 'sbo', 'SalBow6G3603' => 'sbo', 'SalBow6G5266' => 'sbo', 'SalBow7G2265' => 'sbo', 'SalBow8G0850' => 'sbo', 'SalBow8G2592' => 'sbo', 'Sc05g0009240' => 'sci', 'Sc12g0002300' => 'sci', 'Sc21g0000100' => 'sci', 'Sc21g0004720' => 'sci', 'Sed0002949' => 'sed', 'Sed0004114' => 'sed', 'Sed0004306' => 'sed', 'Sed0006172' => 'sed', 'Sed0008413' => 'sed', 'Sed0013809' => 'sed', 'Sed0019556' => 'sed', 'SEGI_03570' => 'sgi', 'SEGI_07859' => 'sgi', 'SEGI_15042' => 'sgi', 'SEGI_16263' => 'sgi', 'SEGI_16552' => 'sgi', 'SEGI_24331' => 'sgi', 'SEGI_27316' => 'sgi', 'SEGI_29521' => 'sgi', 'SEGI_41342' => 'sgi', 'SGA_v2.0_scaffold27G11617' => 'sas', 'SGA_v2.0_scaffold316G48428' => 'sas', 'SGA_v2.0_scaffold49G18261' => 'sas', 'SGA_v2.0_scaffold7G03831' => 'sas', 'SGA_v2.0_scaffold93G28359' => 'sas', 'SHI02210' => 'shi', 'SHI06028' => 'shi', 'SHI06321' => 'shi', 'SMO111G0012' => 'smo', 'SMO228G0080' => 'smo', 'SMO356G0756' => 'smo', 'Solyc02g080620.3' => 'sly', 'Solyc06g074530.1' => 'sly', 'Solyc11g066890.1' => 'sly', 'Solyc11g072520.3' => 'sly', 'Sopen02g025330' => 'spe', 'Sopen06g031000' => 'spe', 'Sopen09g008240' => 'spe', 'Sopen09g025210' => 'spe', 'Sopen11g026600' => 'spe', 'Sopen11g030170' => 'spe', 'Sp1g10420' => 'spa', 'Sp3g06570' => 'spa', 'Sp4g10660' => 'spa', 'Sp5g16460' => 'spa', 'Sp6g22710' => 'spa', 'TAR365G0112' => 'tar', 'TAR369G0717' => 'tar', 'TAR374G0976' => 'tar', 'TAR623G1128' => 'tar', 'TAR626G1937' => 'tar', 'TAR627G0123' => 'tar', 'TAR628G0305' => 'tar', 'TAR636G1176' => 'tar', 'TAR636G2442' => 'tar', 'THA.LOC104800556' => 'tha', 'THA.LOC104809501' => 'tha', 'THA.LOC104815126' => 'tha', 'THA.LOC104815732' => 'tha', 'THA.LOC104823528' => 'tha', 'Thecc.02G365600' => 'tca', 'Thecc.06G222300' => 'tca', 'Thecc.09G261800' => 'tca', 'Thecc.09G291400' => 'tca', 'Thhalv10003028m.g' => 'esa', 'Thhalv10007886m.g' => 'esa', 'Thhalv10016085m.g' => 'esa', 'Thhalv10016681m.g' => 'esa', 'Thhalv10020951m.g' => 'esa', 'TPR.G15598' => 'tpr', 'TPR.G29305' => 'tpr', 'TPR.G32395' => 'tpr', 'TPR.G36998' => 'tpr', 'TPR.G4227' => 'tpr', 'TWI18G1433' => 'twi', 'TWI31G0755' => 'twi', 'TWI38G0912' => 'twi', 'TWI75G1097' => 'twi', 'TWI75G1619' => 'twi', 'TWI79G1336' => 'twi', 'unitig_0.g943' => 'ugi', 'unitig_0.g944' => 'ugi', 'unitig_22.g6646' => 'ugi', 'unitig_37.g12681' => 'ugi', 'unitig_8.g3290' => 'ugi', 'vmacro03278' => 'vma', 'vmacro12197' => 'vma', 'vmacro14478' => 'vma', 'vmacro15787' => 'vma', 'vmacro15789' => 'vma', 'vmacro15790' => 'vma', 'vmacro15806' => 'vma', 'vmacro22907' => 'vma', 'vmacro22908' => 'vma', 'vmacro22909' => 'vma', 'vmacro23108' => 'vma', 'VMungo0540G0540' => 'vmu', 'VMungo0540G2468' => 'vmu', 'VMungo1080G0390' => 'vmu', 'VMungo1080G1165' => 'vmu', 'VMungo1127G0170' => 'vmu', 'VMungo1127G2099' => 'vmu', 'VMungo1215G3013' => 'vmu', 'Zm00001eb013110' => 'zma', 'Zm00001eb084260' => 'zma', 'Zm00001eb096110' => 'zma', 'Zm00001eb217510' => 'zma', 'Zm00001eb322550' => 'zma', 'Zm00001eb390770' => 'zma', 'Zm00001eb397170' => 'zma', 'Zm00001eb404610' => 'zma', 'Zm00001eb421790' => 'zma' ) $gf_id = 'HOM05D000911' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000911' ) $data_identifier = 'HOM05D000911' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 16, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 5, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 6, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 8, 'nnu' => (int) 16, 'oeu' => (int) 8, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 5, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 16, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421790' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000911', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27780' => 'bna', 'A03p35380' => 'bna', 'A04p21160' => 'bna', 'A05p40570' => 'bna', 'A06p26900' => 'bna', 'A08p33230' => 'bna', 'A09p65960' => 'bna', 'A10p18290' => 'bna', 'Aa31LG1G12990' => 'aar', 'Aa31LG1G2980' => 'aar', 'Aa31LG4G14320' => 'aar', 'Aa31LG7G11800' => 'aar', 'Aa31sc36G50' => 'aar', 'Aa31sc36G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3721' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5459' => 'aag', 'Actinidia03028' => 'ach', 'Actinidia03753' => 'ach', 'Actinidia04187' => 'ach', 'Actinidia05509' => 'ach', 'Actinidia24180' => 'ach', 'Actinidia26906' => 'ach', 'Actinidia37097' => 'ach', 'Actinidia38249' => 'ach', 'Ah.01g003470' => 'amhyb', 'Ah.01g004580' => 'amhyb', 'Ah.01g014850' => 'amhyb', 'Ah.01g016830' => 'amhyb', 'Ah.14g088000' => 'amhyb', 'AL1G22980' => 'aly', 'AL3G18990' => 'aly', 'AL4G22440' => 'aly', 'AL4G33180' => 'aly', 'AL5G22920' => 'aly', 'AL6G33660' => 'aly', 'AL8G20720' => 'aly', 'Aqoxy1G00935' => 'aox', 'Aqoxy1G02094' => 'aox', 'Aqoxy2G01239' => 'aox', 'Aqoxy4G01870' => 'aox', 'Aqoxy7G00450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.36ZVTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71EM27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5D6C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH3WRE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3NCM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RIM768' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YB5YRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z36GDV' => 'arhy', 'AT1G08250' => 'ath', 'AT1G11790' => 'ath', 'AT2G27820' => 'ath', 'AT3G07630' => 'ath', 'AT3G44720' => 'ath', 'AT5G22630' => 'ath', 'ATR0693G304' => 'atr', 'ATR0794G109' => 'atr', 'ATR0820G120' => 'atr', 'ATR1159G064' => 'atr', 'Atru.chr10.2239' => 'acertr', 'Atru.chr3.3371' => 'acertr', 'Atru.chr6.3202' => 'acertr', 'AUR62006499' => 'cqu', 'AUR62012718' => 'cqu', 'AUR62021938' => 'cqu', 'AUR62023932' => 'cqu', 'AUR62025034' => 'cqu', 'AUR62025035' => 'cqu', 'AUR62038307' => 'cqu', 'AUR62043466' => 'cqu', 'BcaB02g10748' => 'bca', 'BcaB03g13231' => 'bca', 'BcaB03g14689' => 'bca', 'BcaB05g22716' => 'bca', 'BcaB06g28172' => 'bca', 'BcaB08g36413' => 'bca', 'BcaC01g02186' => 'bca', 'BcaC01g04272' => 'bca', 'BcaC02g08080' => 'bca', 'BcaC02g08227' => 'bca', 'BcaC03g13901' => 'bca', 'BcaC04g19593' => 'bca', 'BcaC04g20874' => 'bca', 'BcaC05g29557' => 'bca', 'BcaC06g35505' => 'bca', 'BcaC07g41954' => 'bca', 'BcaC07g41955' => 'bca', 'BcaC07g41956' => 'bca', 'BcaC07g42519' => 'bca', 'BcaC07g42520' => 'bca', 'BcaC07g42523' => 'bca', 'BcaC07g42524' => 'bca', 'BcaC07g42525' => 'bca', 'BcaC08g47480' => 'bca', 'BcaC08g47481' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00530' => 'bna', 'BolC2t07178H' => 'bol', 'BolC3t16567H' => 'bol', 'BolC4t27234H' => 'bol', 'BolC5t29728H' => 'bol', 'BolC5t34622H' => 'bol', 'BolC6t40321H' => 'bol', 'BolC7t42028H' => 'bol', 'BolC8t49125H' => 'bol', 'BolC8t52538H' => 'bol', 'BolC8t52539H' => 'bol', 'BolC9t56681H' => 'bol', 'BolC9t58266H' => 'bol', 'BolSC21t60294H' => 'bol', 'BraA02t05670Z' => 'bra', 'BraA03t12716Z' => 'bra', 'BraA04t17685Z' => 'bra', 'BraA05t22788Z' => 'bra', 'BraA06t24032Z' => 'bra', 'BraA06t25625Z' => 'bra', 'BraA07t27930Z' => 'bra', 'BraA08t35242Z' => 'bra', 'BraA09t38609Z' => 'bra', 'BraA10t43905Z' => 'bra', 'C02p11060' => 'bna', 'C03p42990' => 'bna', 'C03p67310' => 'bna', 'C04p56990' => 'bna', 'C04p58660' => 'bna', 'C05p09890' => 'bna', 'C05p59680' => 'bna', 'C06p19830' => 'bna', 'C06p53040' => 'bna', 'C07p15230' => 'bna', 'C08p50070' => 'bna', 'C08p50090' => 'bna', 'C09p38330' => 'bna', 'C09p53940' => 'bna', 'CAN.G1014.1' => 'can', 'CAN.G644.30' => 'can', 'CAN.G84.47' => 'can', 'CAN.G919.8' => 'can', 'CANSAT54G0113' => 'cansat', 'CANSAT54G1286' => 'cansat', 'CANSAT64G1020' => 'cansat', 'CARHR008080' => 'chi', 'CARHR008090' => 'chi', 'CARHR012130' => 'chi', 'CARHR038390' => 'chi', 'CARHR082330' => 'chi', 'CARHR120520' => 'chi', 'CARHR151470' => 'chi', 'CARHR190950' => 'chi', 'Carub.0001s0760' => 'cru', 'Carub.0001s1146' => 'cru', 'Carub.0003s0721' => 'cru', 'Carub.0004s0858' => 'cru', 'Carub.0005s1040' => 'cru', 'Carub.0006s2035' => 'cru', 'Carub.0015s0005' => 'cru', 'Ca_01607_v3' => 'car', 'Ca_01677_v3' => 'car', 'Ca_06087_v3' => 'car', 'Ca_19238_v3' => 'car', 'Ca_19373_v3' => 'car', 'Ca_21079_v3' => 'car', 'CBR_g54016' => 'cbr', 'CBR_g54018' => 'cbr', 'CBR_g54020' => 'cbr', 'Cc01_g09780' => 'ccan', 'Cc01_g11680' => 'ccan', 'Cc02_g15610' => 'ccan', 'Cc05_g04350' => 'ccan', 'Cc09_g01580' => 'ccan', 'CDE01G0795' => 'cde', 'CDE02G2024' => 'cde', 'CDE02G2260' => 'cde', 'CDE02G4561' => 'cde', 'CDE05G2733' => 'cde', 'CDE05G3422' => 'cde', 'CDE06G2003' => 'cde', 'CDE08G0576' => 'cde', 'CDE09G0048' => 'cde', 'CDE11G0805' => 'cde', 'Cfa003644' => 'cfa', 'Cfa006290' => 'cfa', 'Cfa010080' => 'cfa', 'Cfa011376' => 'cfa', 'Cfa011576' => 'cfa', 'Cfa011577' => 'cfa', 'Cfa014389' => 'cfa', 'Ciclev10006044m.g' => 'ccl', 'Ciclev10006954m.g' => 'ccl', 'Ciclev10015131m.g' => 'ccl', 'Ciclev10015580m.g' => 'ccl', 'Ciclev10028359m.g' => 'ccl', 'Ciclev10028573m.g' => 'ccl', 'CiPaw.03G159300' => 'cil', 'CiPaw.04G115100' => 'cil', 'CiPaw.09G092800' => 'cil', 'CiPaw.10G071800' => 'cil', 'CiPaw.13G105800' => 'cil', 'CiPaw.13G141000' => 'cil', 'CiPaw.14G103400' => 'cil', 'ClCG01G012700' => 'cla', 'ClCG01G012720' => 'cla', 'ClCG01G021920' => 'cla', 'ClCG02G008870' => 'cla', 'ClCG02G020840' => 'cla', 'ClCG02G021930' => 'cla', 'COL.COLO4_19302' => 'col', 'COL.COLO4_25262' => 'col', 'COL.COLO4_31788' => 'col', 'Cpa.g.c34684' => 'cpa', 'Cpa.g.c36520.1' => 'cpa', 'Cpa.g.c45626' => 'cpa', 'Cpa.g.sc121.17' => 'cpa', 'Cpa.g.sc13.22' => 'cpa', 'Cpa.g.sc87.88' => 'cpa', 'Cre06.g261800' => 'cre', 'CsaV3_1G014500' => 'csa', 'CsaV3_1G014510' => 'csa', 'CsaV3_2G034880' => 'csa', 'CsaV3_6G014760' => 'csa', 'CsaV3_6G021500' => 'csa', 'CsaV3_6G048980' => 'csa', 'CSS0002511' => 'camsi', 'CSS0007556' => 'camsi', 'CSS0008532' => 'camsi', 'CSS0009709' => 'camsi', 'CSS0010486' => 'camsi', 'CSS0016768' => 'camsi', 'CSS0023512' => 'camsi', 'CSS0025341' => 'camsi', 'CSS0027999' => 'camsi', 'CSS0028944' => 'camsi', 'CSS0032292' => 'camsi', 'CSS0032464' => 'camsi', 'CSS0037153' => 'camsi', 'CSS0039256' => 'camsi', 'CSS0048392' => 'camsi', 'CSS0050458' => 'camsi', 'DCAR_004224' => 'dca', 'DCAR_006147' => 'dca', 'DCAR_006465' => 'dca', 'DCAR_008159' => 'dca', 'DCAR_012164' => 'dca', 'DCAR_019764' => 'dca', 'Dinv05418' => 'din', 'Dinv10839' => 'din', 'Dinv12521' => 'din', 'Dinv13900' => 'din', 'Dinv29426' => 'din', 'Duzib150G0263' => 'dzi', 'Duzib168G1178' => 'dzi', 'Duzib168G1924' => 'dzi', 'Duzib170G0299' => 'dzi', 'Duzib170G0813' => 'dzi', 'Duzib235G1128' => 'dzi', 'Duzib248G1060' => 'dzi', 'ECA232G1910' => 'eca', 'ECA233G4621' => 'eca', 'ECA238G1216' => 'eca', 'ECA238G1784' => 'eca', 'ECA248G1242' => 'eca', 'EL10Ac8g20071' => 'bvu', 'EL10Ac9g21086' => 'bvu', 'EL10Ac9g22407' => 'bvu', 'EL10Ac9g22412' => 'bvu', 'Eucgr.A01119' => 'egr', 'Eucgr.E04043' => 'egr', 'Eucgr.J00428' => 'egr', 'Eucgr.J00958' => 'egr', 'FAN11G3091' => 'fan', 'FAN11G3651' => 'fan', 'FAN16G2566' => 'fan', 'FAN21G3155' => 'fan', 'FAN21G3400' => 'fan', 'FAN21G3543' => 'fan', 'FAN25G0234' => 'fan', 'FAN25G1422' => 'fan', 'FAN25G3392' => 'fan', 'FvH4_3g01940' => 'fve', 'FvH4_3g29870' => 'fve', 'FvH4_3g33680' => 'fve', 'Glyma.09G004200' => 'gma', 'Glyma.11G151288' => 'gma', 'Glyma.11G189100' => 'gma', 'Glyma.12G072500' => 'gma', 'Glyma.12G085500' => 'gma', 'Glyma.12G181800' => 'gma', 'Glyma.12G193000' => 'gma', 'Glyma.13G309300' => 'gma', 'Glyma.13G319000' => 'gma', 'Glyma.17G012600' => 'gma', 'Gohir.A06G148600' => 'ghi', 'Gohir.A07G115800' => 'ghi', 'Gohir.A08G003600' => 'ghi', 'Gohir.A09G093300' => 'ghi', 'Gohir.A09G105400' => 'ghi', 'Gohir.A09G105500' => 'ghi', 'Gohir.D06G154600' => 'ghi', 'Gohir.D07G120200' => 'ghi', 'Gohir.D08G013900' => 'ghi', 'Gohir.D09G093100' => 'ghi', 'Gohir.D09G102200' => 'ghi', 'Gohir.D09G102300' => 'ghi', 'Gorai.001G129400' => 'gra', 'Gorai.004G008200' => 'gra', 'Gorai.006G109800' => 'gra', 'Gorai.006G119500' => 'gra', 'Gorai.006G121300' => 'gra', 'Gorai.010G180700' => 'gra', 'GSVIVG01012716001' => 'vvi', 'GSVIVG01025118001' => 'vvi', 'GSVIVG01030439001' => 'vvi', 'GSVIVG01031397001' => 'vvi', 'HanXRQChr01g0004201' => 'han', 'HanXRQChr02g0054941' => 'han', 'HanXRQChr05g0141811' => 'han', 'HanXRQChr07g0197751' => 'han', 'HanXRQChr11g0346691' => 'han', 'HanXRQChr13g0396971' => 'han', 'HanXRQChr14g0432951' => 'han', 'HanXRQChr14g0452001' => 'han', 'HanXRQChr15g0496681' => 'han', 'HanXRQChr17g0557491' => 'han', 'HanXRQChr17g0557501' => 'han', 'Haze_06809' => 'cav', 'Haze_12852' => 'cav', 'Haze_15850' => 'cav', 'Haze_23446' => 'cav', 'Haze_23942' => 'cav', 'Haze_23943' => 'cav', 'Hma1.2p1_0091F.1_g046450' => 'hma', 'Hma1.2p1_0128F.1_g059910' => 'hma', 'Hma1.2p1_0249F.1_g102260' => 'hma', 'Hma1.2p1_0453F.1_g156190' => 'hma', 'Hma1.2p1_0695F.1_g204380' => 'hma', 'Hma1.2p1_0749F.1_g212650' => 'hma', 'Hma1.2p1_2156F.1_g315420' => 'hma', 'Hma1.2p1_2686F.1_g326940' => 'hma', 'HPP92_006428' => 'vpl', 'HPP92_012069' => 'vpl', 'HPP92_014129' => 'vpl', 'HPP92_014133' => 'vpl', 'HPP92_017315' => 'vpl', 'HPP92_026445' => 'vpl', 'HPP92_026446' => 'vpl', 'Hund00774' => 'sun', 'Hund07682' => 'sun', 'Hund21413' => 'sun', 'Hund23462' => 'sun', 'Hund23463' => 'sun', 'Lalb_Chr03g0027911' => 'lal', 'Lalb_Chr13g0304271' => 'lal', 'Lalb_Chr19g0137471' => 'lal', 'Lalb_Chr22g0350651' => 'lal', 'Lalb_Chr24g0395151' => 'lal', 'Lj1A1231T40' => 'lonja', 'Lj1A221T48' => 'lonja', 'Lj1C924T12' => 'lonja', 'Lj2C993G6' => 'lonja', 'Lj3g0005790' => 'lja', 'Lj3g0015432' => 'lja', 'Lj3g0017722' => 'lja', 'Lj3g0018497' => 'lja', 'Lj4g0025071' => 'lja', 'Lsat_1_v5_gn_1_129680' => 'lsa', 'Lsat_1_v5_gn_2_25321' => 'lsa', 'Lsat_1_v5_gn_2_95461' => 'lsa', 'Lsat_1_v5_gn_4_159620' => 'lsa', 'Lsat_1_v5_gn_6_41301' => 'lsa', 'Lsat_1_v5_gn_6_74660' => 'lsa', 'Lsat_1_v5_gn_7_11520' => 'lsa', 'Lsat_1_v5_gn_9_67680' => 'lsa', 'Manes.04G008300' => 'mes', 'Manes.04G008400' => 'mes', 'Manes.04G026500' => 'mes', 'Manes.10G135300' => 'mes', 'Manes.11G157300' => 'mes', 'Manes.12G074000' => 'mes', 'Manes.16G006200' => 'mes', 'Manes.17G026400' => 'mes', 'Mapoly0024s0086' => 'mpo', 'Mapoly0024s0087' => 'mpo', 'Mapoly0071s0057' => 'mpo', 'Mapoly0204s0012' => 'mpo', 'MBI04_g37681_MAGBIO' => 'mbi', 'MBI05_g17779_MAGBIO' => 'mbi', 'MBI12_g31184_MAGBIO' => 'mbi', 'MBI17_g11083_MAGBIO' => 'mbi', 'MBI18_g03883_MAGBIO' => 'mbi', 'MBI18_g28940_MAGBIO' => 'mbi', 'MCO01G690' => 'mco', 'MD03G1109900' => 'mdo', 'MD03G1134800' => 'mdo', 'MD05G1348000' => 'mdo', 'MD10G1322400' => 'mdo', 'MD11G1123300' => 'mdo', 'MD11G1157600' => 'mdo', 'Medtr2g084875' => 'mtr', 'Medtr2g088130' => 'mtr', 'Medtr4g055310' => 'mtr', 'Medtr4g061070' => 'mtr', 'Medtr4g132250' => 'mtr', 'MELO3C004795.2' => 'cme', 'MELO3C004797.2' => 'cme', 'MELO3C007396.2' => 'cme', 'MELO3C019277.2' => 'cme', 'MELO3C021449.2' => 'cme', 'MELO3C025736.2' => 'cme', 'Migut.D02175' => 'egut', 'Migut.H01573' => 'egut', 'Migut.M01327' => 'egut', 'Migut.N02513' => 'egut', 'MSTRG.14638' => 'ama', 'MSTRG.18632' => 'ama', 'MSTRG.7203' => 'ama', 'Nitab4.5_0000533g0140' => 'nta', 'Nitab4.5_0000888g0150' => 'nta', 'Nitab4.5_0001453g0040' => 'nta', 'Nitab4.5_0002827g0090' => 'nta', 'Nitab4.5_0003082g0040' => 'nta', 'Nitab4.5_0007799g0040' => 'nta', 'Nitab4.5_0008983g0010' => 'nta', 'Nitab4.5_0009017g0020' => 'nta', 'Nn1g02132' => 'nnu', 'Nn1g03492' => 'nnu', 'Nn1g03493' => 'nnu', 'Nn1g03494' => 'nnu', 'Nn1g07164' => 'nnu', 'Nn1g07291' => 'nnu', 'Nn2g10655' => 'nnu', 'Nn2g11652' => 'nnu', 'Nn2g14008' => 'nnu', 'Nn3g17476' => 'nnu', 'Nn3g17477' => 'nnu', 'Nn4g22370' => 'nnu', 'Nn4g25255' => 'nnu', 'Nn5g27755' => 'nnu', 'Nn6g34260' => 'nnu', 'Nn6g35041' => 'nnu', 'Oeu005924.1' => 'oeu', 'Oeu008383.1' => 'oeu', 'Oeu014928.1' => 'oeu', 'Oeu019889.1' => 'oeu', 'Oeu022271.1' => 'oeu', 'Oeu025271.1' => 'oeu', 'Oeu036302.1' => 'oeu', 'Oeu044100.1' => 'oeu', 'Os01g0528300' => 'osa', 'Os03g0286200' => 'osa', 'Os04g0406600' => 'osa', 'Os07g0512000' => 'osa', 'Os07g0694600' => 'osa', 'Os08g0411000' => 'osa', 'Os09g0565700' => 'osa', 'Os09g0566050' => 'osa', 'Os10g0523700' => 'osa', 'Peaxi162Scf00002g00514' => 'pax', 'Peaxi162Scf00047g01817' => 'pax', 'Peaxi162Scf00114g00001' => 'pax', 'Peaxi162Scf00147g00613' => 'pax', 'Peaxi162Scf00389g00425' => 'pax', 'PGR042G1139' => 'pgr', 'PGR042G3273' => 'pgr', 'PGR102G2180' => 'pgr', 'PGR119G0234' => 'pgr', 'PGR119G0668' => 'pgr', 'PGSC0003DMG400007122' => 'stu', 'PGSC0003DMG400016478' => 'stu', 'PGSC0003DMG400025374' => 'stu', 'PGSC0003DMG400026536' => 'stu', 'Phvul.003G079600' => 'pvu', 'Phvul.005G115600' => 'pvu', 'Phvul.005G127100' => 'pvu', 'Phvul.006G149500' => 'pvu', 'Phvul.006G149600' => 'pvu', 'Phvul.011G071800' => 'pvu', 'Phvul.011G090400' => 'pvu', 'Potri.004G013400' => 'ptr', 'Potri.004G188100' => 'ptr', 'Potri.008G195500' => 'ptr', 'Potri.009G148800' => 'ptr', 'Potri.011G004700' => 'ptr', 'Pp3c17_22810' => 'ppa', 'Pp3c18_4480' => 'ppa', 'Pp3c19_13030' => 'ppa', 'Pp3c1_33620' => 'ppa', 'Pp3c2_9380' => 'ppa', 'PRCOL_00001023' => 'pco', 'Prupe.3G216300' => 'ppe', 'Prupe.4G019500' => 'ppe', 'Prupe.6G092500' => 'ppe', 'Prupe.6G119200' => 'ppe', 'Psat0s1945g0080' => 'psa', 'Psat0s4167g0040' => 'psa', 'Psat1g185800' => 'psa', 'Psat4g006440' => 'psa', 'Psat4g006480' => 'psa', 'Psat4g168120' => 'psa', 'Psat5g255680' => 'psa', 'Psat5g261760' => 'psa', 'Psat7g222120' => 'psa', 'PSO063G7252' => 'pso', 'PSO170G4778' => 'pso', 'PSO210G2249' => 'pso', 'PSO339G2411' => 'pso', 'PSO339G2457' => 'pso', 'PSO339G2854' => 'pso', 'PSO339G4288' => 'pso', 'PSO339G4615' => 'pso', 'PSO384G2796' => 'pso', 'PSO384G2940' => 'pso', 'PSO384G4227' => 'pso', 'PSO478G1425' => 'pso', 'PSO541G3863' => 'pso', 'PSO675G0507' => 'pso', 'PSO782G0338' => 'pso', 'PSO832G0644' => 'pso', 'QL01p013664' => 'qlo', 'QL01p036598' => 'qlo', 'QL05p072984' => 'qlo', 'QL08p005768' => 'qlo', 'QL08p032743' => 'qlo', 'QL93p0073_0439' => 'qlo', 'QL93p0073_0444' => 'qlo', 'RcHm_v2.0_Chr5g0002851' => 'rch', 'RcHm_v2.0_Chr5g0055201' => 'rch', 'RcHm_v2.0_Chr5g0061191' => 'rch', 'RcHm_v2.0_Chr7g0203231' => 'rch', 'Rhsim01G0208100' => 'rsi', 'Rhsim01G0208200' => 'rsi', 'Rhsim02G0106500' => 'rsi', 'Rhsim03G0107900' => 'rsi', 'Rhsim06G0163400' => 'rsi', 'Rhsim13G0105200' => 'rsi', 'Sabra04G0006300' => 'sbr', 'Sabra04G0127000' => 'sbr', 'Sabra08G0148700' => 'sbr', 'Sabra09G0117400' => 'sbr', 'SalBow1G3326' => 'sbo', 'SalBow3G3228' => 'sbo', 'SalBow6G1634' => 'sbo', 'SalBow6G3603' => 'sbo', 'SalBow6G5266' => 'sbo', 'SalBow7G2265' => 'sbo', 'SalBow8G0850' => 'sbo', 'SalBow8G2592' => 'sbo', 'Sc05g0009240' => 'sci', 'Sc12g0002300' => 'sci', 'Sc21g0000100' => 'sci', 'Sc21g0004720' => 'sci', 'Sed0002949' => 'sed', 'Sed0004114' => 'sed', 'Sed0004306' => 'sed', 'Sed0006172' => 'sed', 'Sed0008413' => 'sed', 'Sed0013809' => 'sed', 'Sed0019556' => 'sed', 'SEGI_03570' => 'sgi', 'SEGI_07859' => 'sgi', 'SEGI_15042' => 'sgi', 'SEGI_16263' => 'sgi', 'SEGI_16552' => 'sgi', 'SEGI_24331' => 'sgi', 'SEGI_27316' => 'sgi', 'SEGI_29521' => 'sgi', 'SEGI_41342' => 'sgi', 'SGA_v2.0_scaffold27G11617' => 'sas', 'SGA_v2.0_scaffold316G48428' => 'sas', 'SGA_v2.0_scaffold49G18261' => 'sas', 'SGA_v2.0_scaffold7G03831' => 'sas', 'SGA_v2.0_scaffold93G28359' => 'sas', 'SHI02210' => 'shi', 'SHI06028' => 'shi', 'SHI06321' => 'shi', 'SMO111G0012' => 'smo', 'SMO228G0080' => 'smo', 'SMO356G0756' => 'smo', 'Solyc02g080620.3' => 'sly', 'Solyc06g074530.1' => 'sly', 'Solyc11g066890.1' => 'sly', 'Solyc11g072520.3' => 'sly', 'Sopen02g025330' => 'spe', 'Sopen06g031000' => 'spe', 'Sopen09g008240' => 'spe', 'Sopen09g025210' => 'spe', 'Sopen11g026600' => 'spe', 'Sopen11g030170' => 'spe', 'Sp1g10420' => 'spa', 'Sp3g06570' => 'spa', 'Sp4g10660' => 'spa', 'Sp5g16460' => 'spa', 'Sp6g22710' => 'spa', 'TAR365G0112' => 'tar', 'TAR369G0717' => 'tar', 'TAR374G0976' => 'tar', 'TAR623G1128' => 'tar', 'TAR626G1937' => 'tar', 'TAR627G0123' => 'tar', 'TAR628G0305' => 'tar', 'TAR636G1176' => 'tar', 'TAR636G2442' => 'tar', 'THA.LOC104800556' => 'tha', 'THA.LOC104809501' => 'tha', 'THA.LOC104815126' => 'tha', 'THA.LOC104815732' => 'tha', 'THA.LOC104823528' => 'tha', 'Thecc.02G365600' => 'tca', 'Thecc.06G222300' => 'tca', 'Thecc.09G261800' => 'tca', 'Thecc.09G291400' => 'tca', 'Thhalv10003028m.g' => 'esa', 'Thhalv10007886m.g' => 'esa', 'Thhalv10016085m.g' => 'esa', 'Thhalv10016681m.g' => 'esa', 'Thhalv10020951m.g' => 'esa', 'TPR.G15598' => 'tpr', 'TPR.G29305' => 'tpr', 'TPR.G32395' => 'tpr', 'TPR.G36998' => 'tpr', 'TPR.G4227' => 'tpr', 'TWI18G1433' => 'twi', 'TWI31G0755' => 'twi', 'TWI38G0912' => 'twi', 'TWI75G1097' => 'twi', 'TWI75G1619' => 'twi', 'TWI79G1336' => 'twi', 'unitig_0.g943' => 'ugi', 'unitig_0.g944' => 'ugi', 'unitig_22.g6646' => 'ugi', 'unitig_37.g12681' => 'ugi', 'unitig_8.g3290' => 'ugi', 'vmacro03278' => 'vma', 'vmacro12197' => 'vma', 'vmacro14478' => 'vma', 'vmacro15787' => 'vma', 'vmacro15789' => 'vma', 'vmacro15790' => 'vma', 'vmacro15806' => 'vma', 'vmacro22907' => 'vma', 'vmacro22908' => 'vma', 'vmacro22909' => 'vma', 'vmacro23108' => 'vma', 'VMungo0540G0540' => 'vmu', 'VMungo0540G2468' => 'vmu', 'VMungo1080G0390' => 'vmu', 'VMungo1080G1165' => 'vmu', 'VMungo1127G0170' => 'vmu', 'VMungo1127G2099' => 'vmu', 'VMungo1215G3013' => 'vmu', 'Zm00001eb013110' => 'zma', 'Zm00001eb084260' => 'zma', 'Zm00001eb096110' => 'zma', 'Zm00001eb217510' => 'zma', 'Zm00001eb322550' => 'zma', 'Zm00001eb390770' => 'zma', 'Zm00001eb397170' => 'zma', 'Zm00001eb404610' => 'zma', 'Zm00001eb421790' => 'zma' ), 'gf_id' => 'HOM05D000911', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000911' ), 'data_identifier' => 'HOM05D000911', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000911', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27780' => 'bna', 'A03p35380' => 'bna', 'A04p21160' => 'bna', 'A05p40570' => 'bna', 'A06p26900' => 'bna', 'A08p33230' => 'bna', 'A09p65960' => 'bna', 'A10p18290' => 'bna', 'Aa31LG1G12990' => 'aar', 'Aa31LG1G2980' => 'aar', 'Aa31LG4G14320' => 'aar', 'Aa31LG7G11800' => 'aar', 'Aa31sc36G50' => 'aar', 'Aa31sc36G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3721' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5459' => 'aag', 'Actinidia03028' => 'ach', 'Actinidia03753' => 'ach', 'Actinidia04187' => 'ach', 'Actinidia05509' => 'ach', 'Actinidia24180' => 'ach', 'Actinidia26906' => 'ach', 'Actinidia37097' => 'ach', 'Actinidia38249' => 'ach', 'Ah.01g003470' => 'amhyb', 'Ah.01g004580' => 'amhyb', 'Ah.01g014850' => 'amhyb', 'Ah.01g016830' => 'amhyb', 'Ah.14g088000' => 'amhyb', 'AL1G22980' => 'aly', 'AL3G18990' => 'aly', 'AL4G22440' => 'aly', 'AL4G33180' => 'aly', 'AL5G22920' => 'aly', 'AL6G33660' => 'aly', 'AL8G20720' => 'aly', 'Aqoxy1G00935' => 'aox', 'Aqoxy1G02094' => 'aox', 'Aqoxy2G01239' => 'aox', 'Aqoxy4G01870' => 'aox', 'Aqoxy7G00450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.36ZVTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71EM27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5D6C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH3WRE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3NCM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RIM768' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YB5YRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z36GDV' => 'arhy', 'AT1G08250' => 'ath', 'AT1G11790' => 'ath', 'AT2G27820' => 'ath', 'AT3G07630' => 'ath', 'AT3G44720' => 'ath', 'AT5G22630' => 'ath', 'ATR0693G304' => 'atr', 'ATR0794G109' => 'atr', 'ATR0820G120' => 'atr', 'ATR1159G064' => 'atr', 'Atru.chr10.2239' => 'acertr', 'Atru.chr3.3371' => 'acertr', 'Atru.chr6.3202' => 'acertr', 'AUR62006499' => 'cqu', 'AUR62012718' => 'cqu', 'AUR62021938' => 'cqu', 'AUR62023932' => 'cqu', 'AUR62025034' => 'cqu', 'AUR62025035' => 'cqu', 'AUR62038307' => 'cqu', 'AUR62043466' => 'cqu', 'BcaB02g10748' => 'bca', 'BcaB03g13231' => 'bca', 'BcaB03g14689' => 'bca', 'BcaB05g22716' => 'bca', 'BcaB06g28172' => 'bca', 'BcaB08g36413' => 'bca', 'BcaC01g02186' => 'bca', 'BcaC01g04272' => 'bca', 'BcaC02g08080' => 'bca', 'BcaC02g08227' => 'bca', 'BcaC03g13901' => 'bca', 'BcaC04g19593' => 'bca', 'BcaC04g20874' => 'bca', 'BcaC05g29557' => 'bca', 'BcaC06g35505' => 'bca', 'BcaC07g41954' => 'bca', 'BcaC07g41955' => 'bca', 'BcaC07g41956' => 'bca', 'BcaC07g42519' => 'bca', 'BcaC07g42520' => 'bca', 'BcaC07g42523' => 'bca', 'BcaC07g42524' => 'bca', 'BcaC07g42525' => 'bca', 'BcaC08g47480' => 'bca', 'BcaC08g47481' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00530' => 'bna', 'BolC2t07178H' => 'bol', 'BolC3t16567H' => 'bol', 'BolC4t27234H' => 'bol', 'BolC5t29728H' => 'bol', 'BolC5t34622H' => 'bol', 'BolC6t40321H' => 'bol', 'BolC7t42028H' => 'bol', 'BolC8t49125H' => 'bol', 'BolC8t52538H' => 'bol', 'BolC8t52539H' => 'bol', 'BolC9t56681H' => 'bol', 'BolC9t58266H' => 'bol', 'BolSC21t60294H' => 'bol', 'BraA02t05670Z' => 'bra', 'BraA03t12716Z' => 'bra', 'BraA04t17685Z' => 'bra', 'BraA05t22788Z' => 'bra', 'BraA06t24032Z' => 'bra', 'BraA06t25625Z' => 'bra', 'BraA07t27930Z' => 'bra', 'BraA08t35242Z' => 'bra', 'BraA09t38609Z' => 'bra', 'BraA10t43905Z' => 'bra', 'C02p11060' => 'bna', 'C03p42990' => 'bna', 'C03p67310' => 'bna', 'C04p56990' => 'bna', 'C04p58660' => 'bna', 'C05p09890' => 'bna', 'C05p59680' => 'bna', 'C06p19830' => 'bna', 'C06p53040' => 'bna', 'C07p15230' => 'bna', 'C08p50070' => 'bna', 'C08p50090' => 'bna', 'C09p38330' => 'bna', 'C09p53940' => 'bna', 'CAN.G1014.1' => 'can', 'CAN.G644.30' => 'can', 'CAN.G84.47' => 'can', 'CAN.G919.8' => 'can', 'CANSAT54G0113' => 'cansat', 'CANSAT54G1286' => 'cansat', 'CANSAT64G1020' => 'cansat', 'CARHR008080' => 'chi', 'CARHR008090' => 'chi', 'CARHR012130' => 'chi', 'CARHR038390' => 'chi', 'CARHR082330' => 'chi', 'CARHR120520' => 'chi', 'CARHR151470' => 'chi', 'CARHR190950' => 'chi', 'Carub.0001s0760' => 'cru', 'Carub.0001s1146' => 'cru', 'Carub.0003s0721' => 'cru', 'Carub.0004s0858' => 'cru', 'Carub.0005s1040' => 'cru', 'Carub.0006s2035' => 'cru', 'Carub.0015s0005' => 'cru', 'Ca_01607_v3' => 'car', 'Ca_01677_v3' => 'car', 'Ca_06087_v3' => 'car', 'Ca_19238_v3' => 'car', 'Ca_19373_v3' => 'car', 'Ca_21079_v3' => 'car', 'CBR_g54016' => 'cbr', 'CBR_g54018' => 'cbr', 'CBR_g54020' => 'cbr', 'Cc01_g09780' => 'ccan', 'Cc01_g11680' => 'ccan', 'Cc02_g15610' => 'ccan', 'Cc05_g04350' => 'ccan', 'Cc09_g01580' => 'ccan', 'CDE01G0795' => 'cde', 'CDE02G2024' => 'cde', 'CDE02G2260' => 'cde', 'CDE02G4561' => 'cde', 'CDE05G2733' => 'cde', 'CDE05G3422' => 'cde', 'CDE06G2003' => 'cde', 'CDE08G0576' => 'cde', 'CDE09G0048' => 'cde', 'CDE11G0805' => 'cde', 'Cfa003644' => 'cfa', 'Cfa006290' => 'cfa', 'Cfa010080' => 'cfa', 'Cfa011376' => 'cfa', 'Cfa011576' => 'cfa', 'Cfa011577' => 'cfa', 'Cfa014389' => 'cfa', 'Ciclev10006044m.g' => 'ccl', 'Ciclev10006954m.g' => 'ccl', 'Ciclev10015131m.g' => 'ccl', 'Ciclev10015580m.g' => 'ccl', 'Ciclev10028359m.g' => 'ccl', 'Ciclev10028573m.g' => 'ccl', 'CiPaw.03G159300' => 'cil', 'CiPaw.04G115100' => 'cil', 'CiPaw.09G092800' => 'cil', 'CiPaw.10G071800' => 'cil', 'CiPaw.13G105800' => 'cil', 'CiPaw.13G141000' => 'cil', 'CiPaw.14G103400' => 'cil', 'ClCG01G012700' => 'cla', 'ClCG01G012720' => 'cla', 'ClCG01G021920' => 'cla', 'ClCG02G008870' => 'cla', 'ClCG02G020840' => 'cla', 'ClCG02G021930' => 'cla', 'COL.COLO4_19302' => 'col', 'COL.COLO4_25262' => 'col', 'COL.COLO4_31788' => 'col', 'Cpa.g.c34684' => 'cpa', 'Cpa.g.c36520.1' => 'cpa', 'Cpa.g.c45626' => 'cpa', 'Cpa.g.sc121.17' => 'cpa', 'Cpa.g.sc13.22' => 'cpa', 'Cpa.g.sc87.88' => 'cpa', 'Cre06.g261800' => 'cre', 'CsaV3_1G014500' => 'csa', 'CsaV3_1G014510' => 'csa', 'CsaV3_2G034880' => 'csa', 'CsaV3_6G014760' => 'csa', 'CsaV3_6G021500' => 'csa', 'CsaV3_6G048980' => 'csa', 'CSS0002511' => 'camsi', 'CSS0007556' => 'camsi', 'CSS0008532' => 'camsi', 'CSS0009709' => 'camsi', 'CSS0010486' => 'camsi', 'CSS0016768' => 'camsi', 'CSS0023512' => 'camsi', 'CSS0025341' => 'camsi', 'CSS0027999' => 'camsi', 'CSS0028944' => 'camsi', 'CSS0032292' => 'camsi', 'CSS0032464' => 'camsi', 'CSS0037153' => 'camsi', 'CSS0039256' => 'camsi', 'CSS0048392' => 'camsi', 'CSS0050458' => 'camsi', 'DCAR_004224' => 'dca', 'DCAR_006147' => 'dca', 'DCAR_006465' => 'dca', 'DCAR_008159' => 'dca', 'DCAR_012164' => 'dca', 'DCAR_019764' => 'dca', 'Dinv05418' => 'din', 'Dinv10839' => 'din', 'Dinv12521' => 'din', 'Dinv13900' => 'din', 'Dinv29426' => 'din', 'Duzib150G0263' => 'dzi', 'Duzib168G1178' => 'dzi', 'Duzib168G1924' => 'dzi', 'Duzib170G0299' => 'dzi', 'Duzib170G0813' => 'dzi', 'Duzib235G1128' => 'dzi', 'Duzib248G1060' => 'dzi', 'ECA232G1910' => 'eca', 'ECA233G4621' => 'eca', 'ECA238G1216' => 'eca', 'ECA238G1784' => 'eca', 'ECA248G1242' => 'eca', 'EL10Ac8g20071' => 'bvu', 'EL10Ac9g21086' => 'bvu', 'EL10Ac9g22407' => 'bvu', 'EL10Ac9g22412' => 'bvu', 'Eucgr.A01119' => 'egr', 'Eucgr.E04043' => 'egr', 'Eucgr.J00428' => 'egr', 'Eucgr.J00958' => 'egr', 'FAN11G3091' => 'fan', 'FAN11G3651' => 'fan', 'FAN16G2566' => 'fan', 'FAN21G3155' => 'fan', 'FAN21G3400' => 'fan', 'FAN21G3543' => 'fan', 'FAN25G0234' => 'fan', 'FAN25G1422' => 'fan', 'FAN25G3392' => 'fan', 'FvH4_3g01940' => 'fve', 'FvH4_3g29870' => 'fve', 'FvH4_3g33680' => 'fve', 'Glyma.09G004200' => 'gma', 'Glyma.11G151288' => 'gma', 'Glyma.11G189100' => 'gma', 'Glyma.12G072500' => 'gma', 'Glyma.12G085500' => 'gma', 'Glyma.12G181800' => 'gma', 'Glyma.12G193000' => 'gma', 'Glyma.13G309300' => 'gma', 'Glyma.13G319000' => 'gma', 'Glyma.17G012600' => 'gma', 'Gohir.A06G148600' => 'ghi', 'Gohir.A07G115800' => 'ghi', 'Gohir.A08G003600' => 'ghi', 'Gohir.A09G093300' => 'ghi', 'Gohir.A09G105400' => 'ghi', 'Gohir.A09G105500' => 'ghi', 'Gohir.D06G154600' => 'ghi', 'Gohir.D07G120200' => 'ghi', 'Gohir.D08G013900' => 'ghi', 'Gohir.D09G093100' => 'ghi', 'Gohir.D09G102200' => 'ghi', 'Gohir.D09G102300' => 'ghi', 'Gorai.001G129400' => 'gra', 'Gorai.004G008200' => 'gra', 'Gorai.006G109800' => 'gra', 'Gorai.006G119500' => 'gra', 'Gorai.006G121300' => 'gra', 'Gorai.010G180700' => 'gra', 'GSVIVG01012716001' => 'vvi', 'GSVIVG01025118001' => 'vvi', 'GSVIVG01030439001' => 'vvi', 'GSVIVG01031397001' => 'vvi', 'HanXRQChr01g0004201' => 'han', 'HanXRQChr02g0054941' => 'han', 'HanXRQChr05g0141811' => 'han', 'HanXRQChr07g0197751' => 'han', 'HanXRQChr11g0346691' => 'han', 'HanXRQChr13g0396971' => 'han', 'HanXRQChr14g0432951' => 'han', 'HanXRQChr14g0452001' => 'han', 'HanXRQChr15g0496681' => 'han', 'HanXRQChr17g0557491' => 'han', 'HanXRQChr17g0557501' => 'han', 'Haze_06809' => 'cav', 'Haze_12852' => 'cav', 'Haze_15850' => 'cav', 'Haze_23446' => 'cav', 'Haze_23942' => 'cav', 'Haze_23943' => 'cav', 'Hma1.2p1_0091F.1_g046450' => 'hma', 'Hma1.2p1_0128F.1_g059910' => 'hma', 'Hma1.2p1_0249F.1_g102260' => 'hma', 'Hma1.2p1_0453F.1_g156190' => 'hma', 'Hma1.2p1_0695F.1_g204380' => 'hma', 'Hma1.2p1_0749F.1_g212650' => 'hma', 'Hma1.2p1_2156F.1_g315420' => 'hma', 'Hma1.2p1_2686F.1_g326940' => 'hma', 'HPP92_006428' => 'vpl', 'HPP92_012069' => 'vpl', 'HPP92_014129' => 'vpl', 'HPP92_014133' => 'vpl', 'HPP92_017315' => 'vpl', 'HPP92_026445' => 'vpl', 'HPP92_026446' => 'vpl', 'Hund00774' => 'sun', 'Hund07682' => 'sun', 'Hund21413' => 'sun', 'Hund23462' => 'sun', 'Hund23463' => 'sun', 'Lalb_Chr03g0027911' => 'lal', 'Lalb_Chr13g0304271' => 'lal', 'Lalb_Chr19g0137471' => 'lal', 'Lalb_Chr22g0350651' => 'lal', 'Lalb_Chr24g0395151' => 'lal', 'Lj1A1231T40' => 'lonja', 'Lj1A221T48' => 'lonja', 'Lj1C924T12' => 'lonja', 'Lj2C993G6' => 'lonja', 'Lj3g0005790' => 'lja', 'Lj3g0015432' => 'lja', 'Lj3g0017722' => 'lja', 'Lj3g0018497' => 'lja', 'Lj4g0025071' => 'lja', 'Lsat_1_v5_gn_1_129680' => 'lsa', 'Lsat_1_v5_gn_2_25321' => 'lsa', 'Lsat_1_v5_gn_2_95461' => 'lsa', 'Lsat_1_v5_gn_4_159620' => 'lsa', 'Lsat_1_v5_gn_6_41301' => 'lsa', 'Lsat_1_v5_gn_6_74660' => 'lsa', 'Lsat_1_v5_gn_7_11520' => 'lsa', 'Lsat_1_v5_gn_9_67680' => 'lsa', 'Manes.04G008300' => 'mes', 'Manes.04G008400' => 'mes', 'Manes.04G026500' => 'mes', 'Manes.10G135300' => 'mes', 'Manes.11G157300' => 'mes', 'Manes.12G074000' => 'mes', 'Manes.16G006200' => 'mes', 'Manes.17G026400' => 'mes', 'Mapoly0024s0086' => 'mpo', 'Mapoly0024s0087' => 'mpo', 'Mapoly0071s0057' => 'mpo', 'Mapoly0204s0012' => 'mpo', 'MBI04_g37681_MAGBIO' => 'mbi', 'MBI05_g17779_MAGBIO' => 'mbi', 'MBI12_g31184_MAGBIO' => 'mbi', 'MBI17_g11083_MAGBIO' => 'mbi', 'MBI18_g03883_MAGBIO' => 'mbi', 'MBI18_g28940_MAGBIO' => 'mbi', 'MCO01G690' => 'mco', 'MD03G1109900' => 'mdo', 'MD03G1134800' => 'mdo', 'MD05G1348000' => 'mdo', 'MD10G1322400' => 'mdo', 'MD11G1123300' => 'mdo', 'MD11G1157600' => 'mdo', 'Medtr2g084875' => 'mtr', 'Medtr2g088130' => 'mtr', 'Medtr4g055310' => 'mtr', 'Medtr4g061070' => 'mtr', 'Medtr4g132250' => 'mtr', 'MELO3C004795.2' => 'cme', 'MELO3C004797.2' => 'cme', 'MELO3C007396.2' => 'cme', 'MELO3C019277.2' => 'cme', 'MELO3C021449.2' => 'cme', 'MELO3C025736.2' => 'cme', 'Migut.D02175' => 'egut', 'Migut.H01573' => 'egut', 'Migut.M01327' => 'egut', 'Migut.N02513' => 'egut', 'MSTRG.14638' => 'ama', 'MSTRG.18632' => 'ama', 'MSTRG.7203' => 'ama', 'Nitab4.5_0000533g0140' => 'nta', 'Nitab4.5_0000888g0150' => 'nta', 'Nitab4.5_0001453g0040' => 'nta', 'Nitab4.5_0002827g0090' => 'nta', 'Nitab4.5_0003082g0040' => 'nta', 'Nitab4.5_0007799g0040' => 'nta', 'Nitab4.5_0008983g0010' => 'nta', 'Nitab4.5_0009017g0020' => 'nta', 'Nn1g02132' => 'nnu', 'Nn1g03492' => 'nnu', 'Nn1g03493' => 'nnu', 'Nn1g03494' => 'nnu', 'Nn1g07164' => 'nnu', 'Nn1g07291' => 'nnu', 'Nn2g10655' => 'nnu', 'Nn2g11652' => 'nnu', 'Nn2g14008' => 'nnu', 'Nn3g17476' => 'nnu', 'Nn3g17477' => 'nnu', 'Nn4g22370' => 'nnu', 'Nn4g25255' => 'nnu', 'Nn5g27755' => 'nnu', 'Nn6g34260' => 'nnu', 'Nn6g35041' => 'nnu', 'Oeu005924.1' => 'oeu', 'Oeu008383.1' => 'oeu', 'Oeu014928.1' => 'oeu', 'Oeu019889.1' => 'oeu', 'Oeu022271.1' => 'oeu', 'Oeu025271.1' => 'oeu', 'Oeu036302.1' => 'oeu', 'Oeu044100.1' => 'oeu', 'Os01g0528300' => 'osa', 'Os03g0286200' => 'osa', 'Os04g0406600' => 'osa', 'Os07g0512000' => 'osa', 'Os07g0694600' => 'osa', 'Os08g0411000' => 'osa', 'Os09g0565700' => 'osa', 'Os09g0566050' => 'osa', 'Os10g0523700' => 'osa', 'Peaxi162Scf00002g00514' => 'pax', 'Peaxi162Scf00047g01817' => 'pax', 'Peaxi162Scf00114g00001' => 'pax', 'Peaxi162Scf00147g00613' => 'pax', 'Peaxi162Scf00389g00425' => 'pax', 'PGR042G1139' => 'pgr', 'PGR042G3273' => 'pgr', 'PGR102G2180' => 'pgr', 'PGR119G0234' => 'pgr', 'PGR119G0668' => 'pgr', 'PGSC0003DMG400007122' => 'stu', 'PGSC0003DMG400016478' => 'stu', 'PGSC0003DMG400025374' => 'stu', 'PGSC0003DMG400026536' => 'stu', 'Phvul.003G079600' => 'pvu', 'Phvul.005G115600' => 'pvu', 'Phvul.005G127100' => 'pvu', 'Phvul.006G149500' => 'pvu', 'Phvul.006G149600' => 'pvu', 'Phvul.011G071800' => 'pvu', 'Phvul.011G090400' => 'pvu', 'Potri.004G013400' => 'ptr', 'Potri.004G188100' => 'ptr', 'Potri.008G195500' => 'ptr', 'Potri.009G148800' => 'ptr', 'Potri.011G004700' => 'ptr', 'Pp3c17_22810' => 'ppa', 'Pp3c18_4480' => 'ppa', 'Pp3c19_13030' => 'ppa', 'Pp3c1_33620' => 'ppa', 'Pp3c2_9380' => 'ppa', 'PRCOL_00001023' => 'pco', 'Prupe.3G216300' => 'ppe', 'Prupe.4G019500' => 'ppe', 'Prupe.6G092500' => 'ppe', 'Prupe.6G119200' => 'ppe', 'Psat0s1945g0080' => 'psa', 'Psat0s4167g0040' => 'psa', 'Psat1g185800' => 'psa', 'Psat4g006440' => 'psa', 'Psat4g006480' => 'psa', 'Psat4g168120' => 'psa', 'Psat5g255680' => 'psa', 'Psat5g261760' => 'psa', 'Psat7g222120' => 'psa', 'PSO063G7252' => 'pso', 'PSO170G4778' => 'pso', 'PSO210G2249' => 'pso', 'PSO339G2411' => 'pso', 'PSO339G2457' => 'pso', 'PSO339G2854' => 'pso', 'PSO339G4288' => 'pso', 'PSO339G4615' => 'pso', 'PSO384G2796' => 'pso', 'PSO384G2940' => 'pso', 'PSO384G4227' => 'pso', 'PSO478G1425' => 'pso', 'PSO541G3863' => 'pso', 'PSO675G0507' => 'pso', 'PSO782G0338' => 'pso', 'PSO832G0644' => 'pso', 'QL01p013664' => 'qlo', 'QL01p036598' => 'qlo', 'QL05p072984' => 'qlo', 'QL08p005768' => 'qlo', 'QL08p032743' => 'qlo', 'QL93p0073_0439' => 'qlo', 'QL93p0073_0444' => 'qlo', 'RcHm_v2.0_Chr5g0002851' => 'rch', 'RcHm_v2.0_Chr5g0055201' => 'rch', 'RcHm_v2.0_Chr5g0061191' => 'rch', 'RcHm_v2.0_Chr7g0203231' => 'rch', 'Rhsim01G0208100' => 'rsi', 'Rhsim01G0208200' => 'rsi', 'Rhsim02G0106500' => 'rsi', 'Rhsim03G0107900' => 'rsi', 'Rhsim06G0163400' => 'rsi', 'Rhsim13G0105200' => 'rsi', 'Sabra04G0006300' => 'sbr', 'Sabra04G0127000' => 'sbr', 'Sabra08G0148700' => 'sbr', 'Sabra09G0117400' => 'sbr', 'SalBow1G3326' => 'sbo', 'SalBow3G3228' => 'sbo', 'SalBow6G1634' => 'sbo', 'SalBow6G3603' => 'sbo', 'SalBow6G5266' => 'sbo', 'SalBow7G2265' => 'sbo', 'SalBow8G0850' => 'sbo', 'SalBow8G2592' => 'sbo', 'Sc05g0009240' => 'sci', 'Sc12g0002300' => 'sci', 'Sc21g0000100' => 'sci', 'Sc21g0004720' => 'sci', 'Sed0002949' => 'sed', 'Sed0004114' => 'sed', 'Sed0004306' => 'sed', 'Sed0006172' => 'sed', 'Sed0008413' => 'sed', 'Sed0013809' => 'sed', 'Sed0019556' => 'sed', 'SEGI_03570' => 'sgi', 'SEGI_07859' => 'sgi', 'SEGI_15042' => 'sgi', 'SEGI_16263' => 'sgi', 'SEGI_16552' => 'sgi', 'SEGI_24331' => 'sgi', 'SEGI_27316' => 'sgi', 'SEGI_29521' => 'sgi', 'SEGI_41342' => 'sgi', 'SGA_v2.0_scaffold27G11617' => 'sas', 'SGA_v2.0_scaffold316G48428' => 'sas', 'SGA_v2.0_scaffold49G18261' => 'sas', 'SGA_v2.0_scaffold7G03831' => 'sas', 'SGA_v2.0_scaffold93G28359' => 'sas', 'SHI02210' => 'shi', 'SHI06028' => 'shi', 'SHI06321' => 'shi', 'SMO111G0012' => 'smo', 'SMO228G0080' => 'smo', 'SMO356G0756' => 'smo', 'Solyc02g080620.3' => 'sly', 'Solyc06g074530.1' => 'sly', 'Solyc11g066890.1' => 'sly', 'Solyc11g072520.3' => 'sly', 'Sopen02g025330' => 'spe', 'Sopen06g031000' => 'spe', 'Sopen09g008240' => 'spe', 'Sopen09g025210' => 'spe', 'Sopen11g026600' => 'spe', 'Sopen11g030170' => 'spe', 'Sp1g10420' => 'spa', 'Sp3g06570' => 'spa', 'Sp4g10660' => 'spa', 'Sp5g16460' => 'spa', 'Sp6g22710' => 'spa', 'TAR365G0112' => 'tar', 'TAR369G0717' => 'tar', 'TAR374G0976' => 'tar', 'TAR623G1128' => 'tar', 'TAR626G1937' => 'tar', 'TAR627G0123' => 'tar', 'TAR628G0305' => 'tar', 'TAR636G1176' => 'tar', 'TAR636G2442' => 'tar', 'THA.LOC104800556' => 'tha', 'THA.LOC104809501' => 'tha', 'THA.LOC104815126' => 'tha', 'THA.LOC104815732' => 'tha', 'THA.LOC104823528' => 'tha', 'Thecc.02G365600' => 'tca', 'Thecc.06G222300' => 'tca', 'Thecc.09G261800' => 'tca', 'Thecc.09G291400' => 'tca', 'Thhalv10003028m.g' => 'esa', 'Thhalv10007886m.g' => 'esa', 'Thhalv10016085m.g' => 'esa', 'Thhalv10016681m.g' => 'esa', 'Thhalv10020951m.g' => 'esa', 'TPR.G15598' => 'tpr', 'TPR.G29305' => 'tpr', 'TPR.G32395' => 'tpr', 'TPR.G36998' => 'tpr', 'TPR.G4227' => 'tpr', 'TWI18G1433' => 'twi', 'TWI31G0755' => 'twi', 'TWI38G0912' => 'twi', 'TWI75G1097' => 'twi', 'TWI75G1619' => 'twi', 'TWI79G1336' => 'twi', 'unitig_0.g943' => 'ugi', 'unitig_0.g944' => 'ugi', 'unitig_22.g6646' => 'ugi', 'unitig_37.g12681' => 'ugi', 'unitig_8.g3290' => 'ugi', 'vmacro03278' => 'vma', 'vmacro12197' => 'vma', 'vmacro14478' => 'vma', 'vmacro15787' => 'vma', 'vmacro15789' => 'vma', 'vmacro15790' => 'vma', 'vmacro15806' => 'vma', 'vmacro22907' => 'vma', 'vmacro22908' => 'vma', 'vmacro22909' => 'vma', 'vmacro23108' => 'vma', 'VMungo0540G0540' => 'vmu', 'VMungo0540G2468' => 'vmu', 'VMungo1080G0390' => 'vmu', 'VMungo1080G1165' => 'vmu', 'VMungo1127G0170' => 'vmu', 'VMungo1127G2099' => 'vmu', 'VMungo1215G3013' => 'vmu', 'Zm00001eb013110' => 'zma', 'Zm00001eb084260' => 'zma', 'Zm00001eb096110' => 'zma', 'Zm00001eb217510' => 'zma', 'Zm00001eb322550' => 'zma', 'Zm00001eb390770' => 'zma', 'Zm00001eb397170' => 'zma', 'Zm00001eb404610' => 'zma', 'Zm00001eb421790' => 'zma' ) $gf_id = 'HOM05D000911' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000911' ) $data_identifier = 'HOM05D000911' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 16, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 5, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 6, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 8, 'nnu' => (int) 16, 'oeu' => (int) 8, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 5, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 16, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421790' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000911', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27780' => 'bna', 'A03p35380' => 'bna', 'A04p21160' => 'bna', 'A05p40570' => 'bna', 'A06p26900' => 'bna', 'A08p33230' => 'bna', 'A09p65960' => 'bna', 'A10p18290' => 'bna', 'Aa31LG1G12990' => 'aar', 'Aa31LG1G2980' => 'aar', 'Aa31LG4G14320' => 'aar', 'Aa31LG7G11800' => 'aar', 'Aa31sc36G50' => 'aar', 'Aa31sc36G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3721' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5459' => 'aag', 'Actinidia03028' => 'ach', 'Actinidia03753' => 'ach', 'Actinidia04187' => 'ach', 'Actinidia05509' => 'ach', 'Actinidia24180' => 'ach', 'Actinidia26906' => 'ach', 'Actinidia37097' => 'ach', 'Actinidia38249' => 'ach', 'Ah.01g003470' => 'amhyb', 'Ah.01g004580' => 'amhyb', 'Ah.01g014850' => 'amhyb', 'Ah.01g016830' => 'amhyb', 'Ah.14g088000' => 'amhyb', 'AL1G22980' => 'aly', 'AL3G18990' => 'aly', 'AL4G22440' => 'aly', 'AL4G33180' => 'aly', 'AL5G22920' => 'aly', 'AL6G33660' => 'aly', 'AL8G20720' => 'aly', 'Aqoxy1G00935' => 'aox', 'Aqoxy1G02094' => 'aox', 'Aqoxy2G01239' => 'aox', 'Aqoxy4G01870' => 'aox', 'Aqoxy7G00450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.36ZVTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71EM27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5D6C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH3WRE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3NCM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RIM768' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YB5YRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z36GDV' => 'arhy', 'AT1G08250' => 'ath', 'AT1G11790' => 'ath', 'AT2G27820' => 'ath', 'AT3G07630' => 'ath', 'AT3G44720' => 'ath', 'AT5G22630' => 'ath', 'ATR0693G304' => 'atr', 'ATR0794G109' => 'atr', 'ATR0820G120' => 'atr', 'ATR1159G064' => 'atr', 'Atru.chr10.2239' => 'acertr', 'Atru.chr3.3371' => 'acertr', 'Atru.chr6.3202' => 'acertr', 'AUR62006499' => 'cqu', 'AUR62012718' => 'cqu', 'AUR62021938' => 'cqu', 'AUR62023932' => 'cqu', 'AUR62025034' => 'cqu', 'AUR62025035' => 'cqu', 'AUR62038307' => 'cqu', 'AUR62043466' => 'cqu', 'BcaB02g10748' => 'bca', 'BcaB03g13231' => 'bca', 'BcaB03g14689' => 'bca', 'BcaB05g22716' => 'bca', 'BcaB06g28172' => 'bca', 'BcaB08g36413' => 'bca', 'BcaC01g02186' => 'bca', 'BcaC01g04272' => 'bca', 'BcaC02g08080' => 'bca', 'BcaC02g08227' => 'bca', 'BcaC03g13901' => 'bca', 'BcaC04g19593' => 'bca', 'BcaC04g20874' => 'bca', 'BcaC05g29557' => 'bca', 'BcaC06g35505' => 'bca', 'BcaC07g41954' => 'bca', 'BcaC07g41955' => 'bca', 'BcaC07g41956' => 'bca', 'BcaC07g42519' => 'bca', 'BcaC07g42520' => 'bca', 'BcaC07g42523' => 'bca', 'BcaC07g42524' => 'bca', 'BcaC07g42525' => 'bca', 'BcaC08g47480' => 'bca', 'BcaC08g47481' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00530' => 'bna', 'BolC2t07178H' => 'bol', 'BolC3t16567H' => 'bol', 'BolC4t27234H' => 'bol', 'BolC5t29728H' => 'bol', 'BolC5t34622H' => 'bol', 'BolC6t40321H' => 'bol', 'BolC7t42028H' => 'bol', 'BolC8t49125H' => 'bol', 'BolC8t52538H' => 'bol', 'BolC8t52539H' => 'bol', 'BolC9t56681H' => 'bol', 'BolC9t58266H' => 'bol', 'BolSC21t60294H' => 'bol', 'BraA02t05670Z' => 'bra', 'BraA03t12716Z' => 'bra', 'BraA04t17685Z' => 'bra', 'BraA05t22788Z' => 'bra', 'BraA06t24032Z' => 'bra', 'BraA06t25625Z' => 'bra', 'BraA07t27930Z' => 'bra', 'BraA08t35242Z' => 'bra', 'BraA09t38609Z' => 'bra', 'BraA10t43905Z' => 'bra', 'C02p11060' => 'bna', 'C03p42990' => 'bna', 'C03p67310' => 'bna', 'C04p56990' => 'bna', 'C04p58660' => 'bna', 'C05p09890' => 'bna', 'C05p59680' => 'bna', 'C06p19830' => 'bna', 'C06p53040' => 'bna', 'C07p15230' => 'bna', 'C08p50070' => 'bna', 'C08p50090' => 'bna', 'C09p38330' => 'bna', 'C09p53940' => 'bna', 'CAN.G1014.1' => 'can', 'CAN.G644.30' => 'can', 'CAN.G84.47' => 'can', 'CAN.G919.8' => 'can', 'CANSAT54G0113' => 'cansat', 'CANSAT54G1286' => 'cansat', 'CANSAT64G1020' => 'cansat', 'CARHR008080' => 'chi', 'CARHR008090' => 'chi', 'CARHR012130' => 'chi', 'CARHR038390' => 'chi', 'CARHR082330' => 'chi', 'CARHR120520' => 'chi', 'CARHR151470' => 'chi', 'CARHR190950' => 'chi', 'Carub.0001s0760' => 'cru', 'Carub.0001s1146' => 'cru', 'Carub.0003s0721' => 'cru', 'Carub.0004s0858' => 'cru', 'Carub.0005s1040' => 'cru', 'Carub.0006s2035' => 'cru', 'Carub.0015s0005' => 'cru', 'Ca_01607_v3' => 'car', 'Ca_01677_v3' => 'car', 'Ca_06087_v3' => 'car', 'Ca_19238_v3' => 'car', 'Ca_19373_v3' => 'car', 'Ca_21079_v3' => 'car', 'CBR_g54016' => 'cbr', 'CBR_g54018' => 'cbr', 'CBR_g54020' => 'cbr', 'Cc01_g09780' => 'ccan', 'Cc01_g11680' => 'ccan', 'Cc02_g15610' => 'ccan', 'Cc05_g04350' => 'ccan', 'Cc09_g01580' => 'ccan', 'CDE01G0795' => 'cde', 'CDE02G2024' => 'cde', 'CDE02G2260' => 'cde', 'CDE02G4561' => 'cde', 'CDE05G2733' => 'cde', 'CDE05G3422' => 'cde', 'CDE06G2003' => 'cde', 'CDE08G0576' => 'cde', 'CDE09G0048' => 'cde', 'CDE11G0805' => 'cde', 'Cfa003644' => 'cfa', 'Cfa006290' => 'cfa', 'Cfa010080' => 'cfa', 'Cfa011376' => 'cfa', 'Cfa011576' => 'cfa', 'Cfa011577' => 'cfa', 'Cfa014389' => 'cfa', 'Ciclev10006044m.g' => 'ccl', 'Ciclev10006954m.g' => 'ccl', 'Ciclev10015131m.g' => 'ccl', 'Ciclev10015580m.g' => 'ccl', 'Ciclev10028359m.g' => 'ccl', 'Ciclev10028573m.g' => 'ccl', 'CiPaw.03G159300' => 'cil', 'CiPaw.04G115100' => 'cil', 'CiPaw.09G092800' => 'cil', 'CiPaw.10G071800' => 'cil', 'CiPaw.13G105800' => 'cil', 'CiPaw.13G141000' => 'cil', 'CiPaw.14G103400' => 'cil', 'ClCG01G012700' => 'cla', 'ClCG01G012720' => 'cla', 'ClCG01G021920' => 'cla', 'ClCG02G008870' => 'cla', 'ClCG02G020840' => 'cla', 'ClCG02G021930' => 'cla', 'COL.COLO4_19302' => 'col', 'COL.COLO4_25262' => 'col', 'COL.COLO4_31788' => 'col', 'Cpa.g.c34684' => 'cpa', 'Cpa.g.c36520.1' => 'cpa', 'Cpa.g.c45626' => 'cpa', 'Cpa.g.sc121.17' => 'cpa', 'Cpa.g.sc13.22' => 'cpa', 'Cpa.g.sc87.88' => 'cpa', 'Cre06.g261800' => 'cre', 'CsaV3_1G014500' => 'csa', 'CsaV3_1G014510' => 'csa', 'CsaV3_2G034880' => 'csa', 'CsaV3_6G014760' => 'csa', 'CsaV3_6G021500' => 'csa', 'CsaV3_6G048980' => 'csa', 'CSS0002511' => 'camsi', 'CSS0007556' => 'camsi', 'CSS0008532' => 'camsi', 'CSS0009709' => 'camsi', 'CSS0010486' => 'camsi', 'CSS0016768' => 'camsi', 'CSS0023512' => 'camsi', 'CSS0025341' => 'camsi', 'CSS0027999' => 'camsi', 'CSS0028944' => 'camsi', 'CSS0032292' => 'camsi', 'CSS0032464' => 'camsi', 'CSS0037153' => 'camsi', 'CSS0039256' => 'camsi', 'CSS0048392' => 'camsi', 'CSS0050458' => 'camsi', 'DCAR_004224' => 'dca', 'DCAR_006147' => 'dca', 'DCAR_006465' => 'dca', 'DCAR_008159' => 'dca', 'DCAR_012164' => 'dca', 'DCAR_019764' => 'dca', 'Dinv05418' => 'din', 'Dinv10839' => 'din', 'Dinv12521' => 'din', 'Dinv13900' => 'din', 'Dinv29426' => 'din', 'Duzib150G0263' => 'dzi', 'Duzib168G1178' => 'dzi', 'Duzib168G1924' => 'dzi', 'Duzib170G0299' => 'dzi', 'Duzib170G0813' => 'dzi', 'Duzib235G1128' => 'dzi', 'Duzib248G1060' => 'dzi', 'ECA232G1910' => 'eca', 'ECA233G4621' => 'eca', 'ECA238G1216' => 'eca', 'ECA238G1784' => 'eca', 'ECA248G1242' => 'eca', 'EL10Ac8g20071' => 'bvu', 'EL10Ac9g21086' => 'bvu', 'EL10Ac9g22407' => 'bvu', 'EL10Ac9g22412' => 'bvu', 'Eucgr.A01119' => 'egr', 'Eucgr.E04043' => 'egr', 'Eucgr.J00428' => 'egr', 'Eucgr.J00958' => 'egr', 'FAN11G3091' => 'fan', 'FAN11G3651' => 'fan', 'FAN16G2566' => 'fan', 'FAN21G3155' => 'fan', 'FAN21G3400' => 'fan', 'FAN21G3543' => 'fan', 'FAN25G0234' => 'fan', 'FAN25G1422' => 'fan', 'FAN25G3392' => 'fan', 'FvH4_3g01940' => 'fve', 'FvH4_3g29870' => 'fve', 'FvH4_3g33680' => 'fve', 'Glyma.09G004200' => 'gma', 'Glyma.11G151288' => 'gma', 'Glyma.11G189100' => 'gma', 'Glyma.12G072500' => 'gma', 'Glyma.12G085500' => 'gma', 'Glyma.12G181800' => 'gma', 'Glyma.12G193000' => 'gma', 'Glyma.13G309300' => 'gma', 'Glyma.13G319000' => 'gma', 'Glyma.17G012600' => 'gma', 'Gohir.A06G148600' => 'ghi', 'Gohir.A07G115800' => 'ghi', 'Gohir.A08G003600' => 'ghi', 'Gohir.A09G093300' => 'ghi', 'Gohir.A09G105400' => 'ghi', 'Gohir.A09G105500' => 'ghi', 'Gohir.D06G154600' => 'ghi', 'Gohir.D07G120200' => 'ghi', 'Gohir.D08G013900' => 'ghi', 'Gohir.D09G093100' => 'ghi', 'Gohir.D09G102200' => 'ghi', 'Gohir.D09G102300' => 'ghi', 'Gorai.001G129400' => 'gra', 'Gorai.004G008200' => 'gra', 'Gorai.006G109800' => 'gra', 'Gorai.006G119500' => 'gra', 'Gorai.006G121300' => 'gra', 'Gorai.010G180700' => 'gra', 'GSVIVG01012716001' => 'vvi', 'GSVIVG01025118001' => 'vvi', 'GSVIVG01030439001' => 'vvi', 'GSVIVG01031397001' => 'vvi', 'HanXRQChr01g0004201' => 'han', 'HanXRQChr02g0054941' => 'han', 'HanXRQChr05g0141811' => 'han', 'HanXRQChr07g0197751' => 'han', 'HanXRQChr11g0346691' => 'han', 'HanXRQChr13g0396971' => 'han', 'HanXRQChr14g0432951' => 'han', 'HanXRQChr14g0452001' => 'han', 'HanXRQChr15g0496681' => 'han', 'HanXRQChr17g0557491' => 'han', 'HanXRQChr17g0557501' => 'han', 'Haze_06809' => 'cav', 'Haze_12852' => 'cav', 'Haze_15850' => 'cav', 'Haze_23446' => 'cav', 'Haze_23942' => 'cav', 'Haze_23943' => 'cav', 'Hma1.2p1_0091F.1_g046450' => 'hma', 'Hma1.2p1_0128F.1_g059910' => 'hma', 'Hma1.2p1_0249F.1_g102260' => 'hma', 'Hma1.2p1_0453F.1_g156190' => 'hma', 'Hma1.2p1_0695F.1_g204380' => 'hma', 'Hma1.2p1_0749F.1_g212650' => 'hma', 'Hma1.2p1_2156F.1_g315420' => 'hma', 'Hma1.2p1_2686F.1_g326940' => 'hma', 'HPP92_006428' => 'vpl', 'HPP92_012069' => 'vpl', 'HPP92_014129' => 'vpl', 'HPP92_014133' => 'vpl', 'HPP92_017315' => 'vpl', 'HPP92_026445' => 'vpl', 'HPP92_026446' => 'vpl', 'Hund00774' => 'sun', 'Hund07682' => 'sun', 'Hund21413' => 'sun', 'Hund23462' => 'sun', 'Hund23463' => 'sun', 'Lalb_Chr03g0027911' => 'lal', 'Lalb_Chr13g0304271' => 'lal', 'Lalb_Chr19g0137471' => 'lal', 'Lalb_Chr22g0350651' => 'lal', 'Lalb_Chr24g0395151' => 'lal', 'Lj1A1231T40' => 'lonja', 'Lj1A221T48' => 'lonja', 'Lj1C924T12' => 'lonja', 'Lj2C993G6' => 'lonja', 'Lj3g0005790' => 'lja', 'Lj3g0015432' => 'lja', 'Lj3g0017722' => 'lja', 'Lj3g0018497' => 'lja', 'Lj4g0025071' => 'lja', 'Lsat_1_v5_gn_1_129680' => 'lsa', 'Lsat_1_v5_gn_2_25321' => 'lsa', 'Lsat_1_v5_gn_2_95461' => 'lsa', 'Lsat_1_v5_gn_4_159620' => 'lsa', 'Lsat_1_v5_gn_6_41301' => 'lsa', 'Lsat_1_v5_gn_6_74660' => 'lsa', 'Lsat_1_v5_gn_7_11520' => 'lsa', 'Lsat_1_v5_gn_9_67680' => 'lsa', 'Manes.04G008300' => 'mes', 'Manes.04G008400' => 'mes', 'Manes.04G026500' => 'mes', 'Manes.10G135300' => 'mes', 'Manes.11G157300' => 'mes', 'Manes.12G074000' => 'mes', 'Manes.16G006200' => 'mes', 'Manes.17G026400' => 'mes', 'Mapoly0024s0086' => 'mpo', 'Mapoly0024s0087' => 'mpo', 'Mapoly0071s0057' => 'mpo', 'Mapoly0204s0012' => 'mpo', 'MBI04_g37681_MAGBIO' => 'mbi', 'MBI05_g17779_MAGBIO' => 'mbi', 'MBI12_g31184_MAGBIO' => 'mbi', 'MBI17_g11083_MAGBIO' => 'mbi', 'MBI18_g03883_MAGBIO' => 'mbi', 'MBI18_g28940_MAGBIO' => 'mbi', 'MCO01G690' => 'mco', 'MD03G1109900' => 'mdo', 'MD03G1134800' => 'mdo', 'MD05G1348000' => 'mdo', 'MD10G1322400' => 'mdo', 'MD11G1123300' => 'mdo', 'MD11G1157600' => 'mdo', 'Medtr2g084875' => 'mtr', 'Medtr2g088130' => 'mtr', 'Medtr4g055310' => 'mtr', 'Medtr4g061070' => 'mtr', 'Medtr4g132250' => 'mtr', 'MELO3C004795.2' => 'cme', 'MELO3C004797.2' => 'cme', 'MELO3C007396.2' => 'cme', 'MELO3C019277.2' => 'cme', 'MELO3C021449.2' => 'cme', 'MELO3C025736.2' => 'cme', 'Migut.D02175' => 'egut', 'Migut.H01573' => 'egut', 'Migut.M01327' => 'egut', 'Migut.N02513' => 'egut', 'MSTRG.14638' => 'ama', 'MSTRG.18632' => 'ama', 'MSTRG.7203' => 'ama', 'Nitab4.5_0000533g0140' => 'nta', 'Nitab4.5_0000888g0150' => 'nta', 'Nitab4.5_0001453g0040' => 'nta', 'Nitab4.5_0002827g0090' => 'nta', 'Nitab4.5_0003082g0040' => 'nta', 'Nitab4.5_0007799g0040' => 'nta', 'Nitab4.5_0008983g0010' => 'nta', 'Nitab4.5_0009017g0020' => 'nta', 'Nn1g02132' => 'nnu', 'Nn1g03492' => 'nnu', 'Nn1g03493' => 'nnu', 'Nn1g03494' => 'nnu', 'Nn1g07164' => 'nnu', 'Nn1g07291' => 'nnu', 'Nn2g10655' => 'nnu', 'Nn2g11652' => 'nnu', 'Nn2g14008' => 'nnu', 'Nn3g17476' => 'nnu', 'Nn3g17477' => 'nnu', 'Nn4g22370' => 'nnu', 'Nn4g25255' => 'nnu', 'Nn5g27755' => 'nnu', 'Nn6g34260' => 'nnu', 'Nn6g35041' => 'nnu', 'Oeu005924.1' => 'oeu', 'Oeu008383.1' => 'oeu', 'Oeu014928.1' => 'oeu', 'Oeu019889.1' => 'oeu', 'Oeu022271.1' => 'oeu', 'Oeu025271.1' => 'oeu', 'Oeu036302.1' => 'oeu', 'Oeu044100.1' => 'oeu', 'Os01g0528300' => 'osa', 'Os03g0286200' => 'osa', 'Os04g0406600' => 'osa', 'Os07g0512000' => 'osa', 'Os07g0694600' => 'osa', 'Os08g0411000' => 'osa', 'Os09g0565700' => 'osa', 'Os09g0566050' => 'osa', 'Os10g0523700' => 'osa', 'Peaxi162Scf00002g00514' => 'pax', 'Peaxi162Scf00047g01817' => 'pax', 'Peaxi162Scf00114g00001' => 'pax', 'Peaxi162Scf00147g00613' => 'pax', 'Peaxi162Scf00389g00425' => 'pax', 'PGR042G1139' => 'pgr', 'PGR042G3273' => 'pgr', 'PGR102G2180' => 'pgr', 'PGR119G0234' => 'pgr', 'PGR119G0668' => 'pgr', 'PGSC0003DMG400007122' => 'stu', 'PGSC0003DMG400016478' => 'stu', 'PGSC0003DMG400025374' => 'stu', 'PGSC0003DMG400026536' => 'stu', 'Phvul.003G079600' => 'pvu', 'Phvul.005G115600' => 'pvu', 'Phvul.005G127100' => 'pvu', 'Phvul.006G149500' => 'pvu', 'Phvul.006G149600' => 'pvu', 'Phvul.011G071800' => 'pvu', 'Phvul.011G090400' => 'pvu', 'Potri.004G013400' => 'ptr', 'Potri.004G188100' => 'ptr', 'Potri.008G195500' => 'ptr', 'Potri.009G148800' => 'ptr', 'Potri.011G004700' => 'ptr', 'Pp3c17_22810' => 'ppa', 'Pp3c18_4480' => 'ppa', 'Pp3c19_13030' => 'ppa', 'Pp3c1_33620' => 'ppa', 'Pp3c2_9380' => 'ppa', 'PRCOL_00001023' => 'pco', 'Prupe.3G216300' => 'ppe', 'Prupe.4G019500' => 'ppe', 'Prupe.6G092500' => 'ppe', 'Prupe.6G119200' => 'ppe', 'Psat0s1945g0080' => 'psa', 'Psat0s4167g0040' => 'psa', 'Psat1g185800' => 'psa', 'Psat4g006440' => 'psa', 'Psat4g006480' => 'psa', 'Psat4g168120' => 'psa', 'Psat5g255680' => 'psa', 'Psat5g261760' => 'psa', 'Psat7g222120' => 'psa', 'PSO063G7252' => 'pso', 'PSO170G4778' => 'pso', 'PSO210G2249' => 'pso', 'PSO339G2411' => 'pso', 'PSO339G2457' => 'pso', 'PSO339G2854' => 'pso', 'PSO339G4288' => 'pso', 'PSO339G4615' => 'pso', 'PSO384G2796' => 'pso', 'PSO384G2940' => 'pso', 'PSO384G4227' => 'pso', 'PSO478G1425' => 'pso', 'PSO541G3863' => 'pso', 'PSO675G0507' => 'pso', 'PSO782G0338' => 'pso', 'PSO832G0644' => 'pso', 'QL01p013664' => 'qlo', 'QL01p036598' => 'qlo', 'QL05p072984' => 'qlo', 'QL08p005768' => 'qlo', 'QL08p032743' => 'qlo', 'QL93p0073_0439' => 'qlo', 'QL93p0073_0444' => 'qlo', 'RcHm_v2.0_Chr5g0002851' => 'rch', 'RcHm_v2.0_Chr5g0055201' => 'rch', 'RcHm_v2.0_Chr5g0061191' => 'rch', 'RcHm_v2.0_Chr7g0203231' => 'rch', 'Rhsim01G0208100' => 'rsi', 'Rhsim01G0208200' => 'rsi', 'Rhsim02G0106500' => 'rsi', 'Rhsim03G0107900' => 'rsi', 'Rhsim06G0163400' => 'rsi', 'Rhsim13G0105200' => 'rsi', 'Sabra04G0006300' => 'sbr', 'Sabra04G0127000' => 'sbr', 'Sabra08G0148700' => 'sbr', 'Sabra09G0117400' => 'sbr', 'SalBow1G3326' => 'sbo', 'SalBow3G3228' => 'sbo', 'SalBow6G1634' => 'sbo', 'SalBow6G3603' => 'sbo', 'SalBow6G5266' => 'sbo', 'SalBow7G2265' => 'sbo', 'SalBow8G0850' => 'sbo', 'SalBow8G2592' => 'sbo', 'Sc05g0009240' => 'sci', 'Sc12g0002300' => 'sci', 'Sc21g0000100' => 'sci', 'Sc21g0004720' => 'sci', 'Sed0002949' => 'sed', 'Sed0004114' => 'sed', 'Sed0004306' => 'sed', 'Sed0006172' => 'sed', 'Sed0008413' => 'sed', 'Sed0013809' => 'sed', 'Sed0019556' => 'sed', 'SEGI_03570' => 'sgi', 'SEGI_07859' => 'sgi', 'SEGI_15042' => 'sgi', 'SEGI_16263' => 'sgi', 'SEGI_16552' => 'sgi', 'SEGI_24331' => 'sgi', 'SEGI_27316' => 'sgi', 'SEGI_29521' => 'sgi', 'SEGI_41342' => 'sgi', 'SGA_v2.0_scaffold27G11617' => 'sas', 'SGA_v2.0_scaffold316G48428' => 'sas', 'SGA_v2.0_scaffold49G18261' => 'sas', 'SGA_v2.0_scaffold7G03831' => 'sas', 'SGA_v2.0_scaffold93G28359' => 'sas', 'SHI02210' => 'shi', 'SHI06028' => 'shi', 'SHI06321' => 'shi', 'SMO111G0012' => 'smo', 'SMO228G0080' => 'smo', 'SMO356G0756' => 'smo', 'Solyc02g080620.3' => 'sly', 'Solyc06g074530.1' => 'sly', 'Solyc11g066890.1' => 'sly', 'Solyc11g072520.3' => 'sly', 'Sopen02g025330' => 'spe', 'Sopen06g031000' => 'spe', 'Sopen09g008240' => 'spe', 'Sopen09g025210' => 'spe', 'Sopen11g026600' => 'spe', 'Sopen11g030170' => 'spe', 'Sp1g10420' => 'spa', 'Sp3g06570' => 'spa', 'Sp4g10660' => 'spa', 'Sp5g16460' => 'spa', 'Sp6g22710' => 'spa', 'TAR365G0112' => 'tar', 'TAR369G0717' => 'tar', 'TAR374G0976' => 'tar', 'TAR623G1128' => 'tar', 'TAR626G1937' => 'tar', 'TAR627G0123' => 'tar', 'TAR628G0305' => 'tar', 'TAR636G1176' => 'tar', 'TAR636G2442' => 'tar', 'THA.LOC104800556' => 'tha', 'THA.LOC104809501' => 'tha', 'THA.LOC104815126' => 'tha', 'THA.LOC104815732' => 'tha', 'THA.LOC104823528' => 'tha', 'Thecc.02G365600' => 'tca', 'Thecc.06G222300' => 'tca', 'Thecc.09G261800' => 'tca', 'Thecc.09G291400' => 'tca', 'Thhalv10003028m.g' => 'esa', 'Thhalv10007886m.g' => 'esa', 'Thhalv10016085m.g' => 'esa', 'Thhalv10016681m.g' => 'esa', 'Thhalv10020951m.g' => 'esa', 'TPR.G15598' => 'tpr', 'TPR.G29305' => 'tpr', 'TPR.G32395' => 'tpr', 'TPR.G36998' => 'tpr', 'TPR.G4227' => 'tpr', 'TWI18G1433' => 'twi', 'TWI31G0755' => 'twi', 'TWI38G0912' => 'twi', 'TWI75G1097' => 'twi', 'TWI75G1619' => 'twi', 'TWI79G1336' => 'twi', 'unitig_0.g943' => 'ugi', 'unitig_0.g944' => 'ugi', 'unitig_22.g6646' => 'ugi', 'unitig_37.g12681' => 'ugi', 'unitig_8.g3290' => 'ugi', 'vmacro03278' => 'vma', 'vmacro12197' => 'vma', 'vmacro14478' => 'vma', 'vmacro15787' => 'vma', 'vmacro15789' => 'vma', 'vmacro15790' => 'vma', 'vmacro15806' => 'vma', 'vmacro22907' => 'vma', 'vmacro22908' => 'vma', 'vmacro22909' => 'vma', 'vmacro23108' => 'vma', 'VMungo0540G0540' => 'vmu', 'VMungo0540G2468' => 'vmu', 'VMungo1080G0390' => 'vmu', 'VMungo1080G1165' => 'vmu', 'VMungo1127G0170' => 'vmu', 'VMungo1127G2099' => 'vmu', 'VMungo1215G3013' => 'vmu', 'Zm00001eb013110' => 'zma', 'Zm00001eb084260' => 'zma', 'Zm00001eb096110' => 'zma', 'Zm00001eb217510' => 'zma', 'Zm00001eb322550' => 'zma', 'Zm00001eb390770' => 'zma', 'Zm00001eb397170' => 'zma', 'Zm00001eb404610' => 'zma', 'Zm00001eb421790' => 'zma' ), 'gf_id' => 'HOM05D000911', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000911' ), 'data_identifier' => 'HOM05D000911', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000911', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27780' => 'bna', 'A03p35380' => 'bna', 'A04p21160' => 'bna', 'A05p40570' => 'bna', 'A06p26900' => 'bna', 'A08p33230' => 'bna', 'A09p65960' => 'bna', 'A10p18290' => 'bna', 'Aa31LG1G12990' => 'aar', 'Aa31LG1G2980' => 'aar', 'Aa31LG4G14320' => 'aar', 'Aa31LG7G11800' => 'aar', 'Aa31sc36G50' => 'aar', 'Aa31sc36G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3721' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5459' => 'aag', 'Actinidia03028' => 'ach', 'Actinidia03753' => 'ach', 'Actinidia04187' => 'ach', 'Actinidia05509' => 'ach', 'Actinidia24180' => 'ach', 'Actinidia26906' => 'ach', 'Actinidia37097' => 'ach', 'Actinidia38249' => 'ach', 'Ah.01g003470' => 'amhyb', 'Ah.01g004580' => 'amhyb', 'Ah.01g014850' => 'amhyb', 'Ah.01g016830' => 'amhyb', 'Ah.14g088000' => 'amhyb', 'AL1G22980' => 'aly', 'AL3G18990' => 'aly', 'AL4G22440' => 'aly', 'AL4G33180' => 'aly', 'AL5G22920' => 'aly', 'AL6G33660' => 'aly', 'AL8G20720' => 'aly', 'Aqoxy1G00935' => 'aox', 'Aqoxy1G02094' => 'aox', 'Aqoxy2G01239' => 'aox', 'Aqoxy4G01870' => 'aox', 'Aqoxy7G00450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.36ZVTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71EM27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5D6C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH3WRE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3NCM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RIM768' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YB5YRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z36GDV' => 'arhy', 'AT1G08250' => 'ath', 'AT1G11790' => 'ath', 'AT2G27820' => 'ath', 'AT3G07630' => 'ath', 'AT3G44720' => 'ath', 'AT5G22630' => 'ath', 'ATR0693G304' => 'atr', 'ATR0794G109' => 'atr', 'ATR0820G120' => 'atr', 'ATR1159G064' => 'atr', 'Atru.chr10.2239' => 'acertr', 'Atru.chr3.3371' => 'acertr', 'Atru.chr6.3202' => 'acertr', 'AUR62006499' => 'cqu', 'AUR62012718' => 'cqu', 'AUR62021938' => 'cqu', 'AUR62023932' => 'cqu', 'AUR62025034' => 'cqu', 'AUR62025035' => 'cqu', 'AUR62038307' => 'cqu', 'AUR62043466' => 'cqu', 'BcaB02g10748' => 'bca', 'BcaB03g13231' => 'bca', 'BcaB03g14689' => 'bca', 'BcaB05g22716' => 'bca', 'BcaB06g28172' => 'bca', 'BcaB08g36413' => 'bca', 'BcaC01g02186' => 'bca', 'BcaC01g04272' => 'bca', 'BcaC02g08080' => 'bca', 'BcaC02g08227' => 'bca', 'BcaC03g13901' => 'bca', 'BcaC04g19593' => 'bca', 'BcaC04g20874' => 'bca', 'BcaC05g29557' => 'bca', 'BcaC06g35505' => 'bca', 'BcaC07g41954' => 'bca', 'BcaC07g41955' => 'bca', 'BcaC07g41956' => 'bca', 'BcaC07g42519' => 'bca', 'BcaC07g42520' => 'bca', 'BcaC07g42523' => 'bca', 'BcaC07g42524' => 'bca', 'BcaC07g42525' => 'bca', 'BcaC08g47480' => 'bca', 'BcaC08g47481' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00530' => 'bna', 'BolC2t07178H' => 'bol', 'BolC3t16567H' => 'bol', 'BolC4t27234H' => 'bol', 'BolC5t29728H' => 'bol', 'BolC5t34622H' => 'bol', 'BolC6t40321H' => 'bol', 'BolC7t42028H' => 'bol', 'BolC8t49125H' => 'bol', 'BolC8t52538H' => 'bol', 'BolC8t52539H' => 'bol', 'BolC9t56681H' => 'bol', 'BolC9t58266H' => 'bol', 'BolSC21t60294H' => 'bol', 'BraA02t05670Z' => 'bra', 'BraA03t12716Z' => 'bra', 'BraA04t17685Z' => 'bra', 'BraA05t22788Z' => 'bra', 'BraA06t24032Z' => 'bra', 'BraA06t25625Z' => 'bra', 'BraA07t27930Z' => 'bra', 'BraA08t35242Z' => 'bra', 'BraA09t38609Z' => 'bra', 'BraA10t43905Z' => 'bra', 'C02p11060' => 'bna', 'C03p42990' => 'bna', 'C03p67310' => 'bna', 'C04p56990' => 'bna', 'C04p58660' => 'bna', 'C05p09890' => 'bna', 'C05p59680' => 'bna', 'C06p19830' => 'bna', 'C06p53040' => 'bna', 'C07p15230' => 'bna', 'C08p50070' => 'bna', 'C08p50090' => 'bna', 'C09p38330' => 'bna', 'C09p53940' => 'bna', 'CAN.G1014.1' => 'can', 'CAN.G644.30' => 'can', 'CAN.G84.47' => 'can', 'CAN.G919.8' => 'can', 'CANSAT54G0113' => 'cansat', 'CANSAT54G1286' => 'cansat', 'CANSAT64G1020' => 'cansat', 'CARHR008080' => 'chi', 'CARHR008090' => 'chi', 'CARHR012130' => 'chi', 'CARHR038390' => 'chi', 'CARHR082330' => 'chi', 'CARHR120520' => 'chi', 'CARHR151470' => 'chi', 'CARHR190950' => 'chi', 'Carub.0001s0760' => 'cru', 'Carub.0001s1146' => 'cru', 'Carub.0003s0721' => 'cru', 'Carub.0004s0858' => 'cru', 'Carub.0005s1040' => 'cru', 'Carub.0006s2035' => 'cru', 'Carub.0015s0005' => 'cru', 'Ca_01607_v3' => 'car', 'Ca_01677_v3' => 'car', 'Ca_06087_v3' => 'car', 'Ca_19238_v3' => 'car', 'Ca_19373_v3' => 'car', 'Ca_21079_v3' => 'car', 'CBR_g54016' => 'cbr', 'CBR_g54018' => 'cbr', 'CBR_g54020' => 'cbr', 'Cc01_g09780' => 'ccan', 'Cc01_g11680' => 'ccan', 'Cc02_g15610' => 'ccan', 'Cc05_g04350' => 'ccan', 'Cc09_g01580' => 'ccan', 'CDE01G0795' => 'cde', 'CDE02G2024' => 'cde', 'CDE02G2260' => 'cde', 'CDE02G4561' => 'cde', 'CDE05G2733' => 'cde', 'CDE05G3422' => 'cde', 'CDE06G2003' => 'cde', 'CDE08G0576' => 'cde', 'CDE09G0048' => 'cde', 'CDE11G0805' => 'cde', 'Cfa003644' => 'cfa', 'Cfa006290' => 'cfa', 'Cfa010080' => 'cfa', 'Cfa011376' => 'cfa', 'Cfa011576' => 'cfa', 'Cfa011577' => 'cfa', 'Cfa014389' => 'cfa', 'Ciclev10006044m.g' => 'ccl', 'Ciclev10006954m.g' => 'ccl', 'Ciclev10015131m.g' => 'ccl', 'Ciclev10015580m.g' => 'ccl', 'Ciclev10028359m.g' => 'ccl', 'Ciclev10028573m.g' => 'ccl', 'CiPaw.03G159300' => 'cil', 'CiPaw.04G115100' => 'cil', 'CiPaw.09G092800' => 'cil', 'CiPaw.10G071800' => 'cil', 'CiPaw.13G105800' => 'cil', 'CiPaw.13G141000' => 'cil', 'CiPaw.14G103400' => 'cil', 'ClCG01G012700' => 'cla', 'ClCG01G012720' => 'cla', 'ClCG01G021920' => 'cla', 'ClCG02G008870' => 'cla', 'ClCG02G020840' => 'cla', 'ClCG02G021930' => 'cla', 'COL.COLO4_19302' => 'col', 'COL.COLO4_25262' => 'col', 'COL.COLO4_31788' => 'col', 'Cpa.g.c34684' => 'cpa', 'Cpa.g.c36520.1' => 'cpa', 'Cpa.g.c45626' => 'cpa', 'Cpa.g.sc121.17' => 'cpa', 'Cpa.g.sc13.22' => 'cpa', 'Cpa.g.sc87.88' => 'cpa', 'Cre06.g261800' => 'cre', 'CsaV3_1G014500' => 'csa', 'CsaV3_1G014510' => 'csa', 'CsaV3_2G034880' => 'csa', 'CsaV3_6G014760' => 'csa', 'CsaV3_6G021500' => 'csa', 'CsaV3_6G048980' => 'csa', 'CSS0002511' => 'camsi', 'CSS0007556' => 'camsi', 'CSS0008532' => 'camsi', 'CSS0009709' => 'camsi', 'CSS0010486' => 'camsi', 'CSS0016768' => 'camsi', 'CSS0023512' => 'camsi', 'CSS0025341' => 'camsi', 'CSS0027999' => 'camsi', 'CSS0028944' => 'camsi', 'CSS0032292' => 'camsi', 'CSS0032464' => 'camsi', 'CSS0037153' => 'camsi', 'CSS0039256' => 'camsi', 'CSS0048392' => 'camsi', 'CSS0050458' => 'camsi', 'DCAR_004224' => 'dca', 'DCAR_006147' => 'dca', 'DCAR_006465' => 'dca', 'DCAR_008159' => 'dca', 'DCAR_012164' => 'dca', 'DCAR_019764' => 'dca', 'Dinv05418' => 'din', 'Dinv10839' => 'din', 'Dinv12521' => 'din', 'Dinv13900' => 'din', 'Dinv29426' => 'din', 'Duzib150G0263' => 'dzi', 'Duzib168G1178' => 'dzi', 'Duzib168G1924' => 'dzi', 'Duzib170G0299' => 'dzi', 'Duzib170G0813' => 'dzi', 'Duzib235G1128' => 'dzi', 'Duzib248G1060' => 'dzi', 'ECA232G1910' => 'eca', 'ECA233G4621' => 'eca', 'ECA238G1216' => 'eca', 'ECA238G1784' => 'eca', 'ECA248G1242' => 'eca', 'EL10Ac8g20071' => 'bvu', 'EL10Ac9g21086' => 'bvu', 'EL10Ac9g22407' => 'bvu', 'EL10Ac9g22412' => 'bvu', 'Eucgr.A01119' => 'egr', 'Eucgr.E04043' => 'egr', 'Eucgr.J00428' => 'egr', 'Eucgr.J00958' => 'egr', 'FAN11G3091' => 'fan', 'FAN11G3651' => 'fan', 'FAN16G2566' => 'fan', 'FAN21G3155' => 'fan', 'FAN21G3400' => 'fan', 'FAN21G3543' => 'fan', 'FAN25G0234' => 'fan', 'FAN25G1422' => 'fan', 'FAN25G3392' => 'fan', 'FvH4_3g01940' => 'fve', 'FvH4_3g29870' => 'fve', 'FvH4_3g33680' => 'fve', 'Glyma.09G004200' => 'gma', 'Glyma.11G151288' => 'gma', 'Glyma.11G189100' => 'gma', 'Glyma.12G072500' => 'gma', 'Glyma.12G085500' => 'gma', 'Glyma.12G181800' => 'gma', 'Glyma.12G193000' => 'gma', 'Glyma.13G309300' => 'gma', 'Glyma.13G319000' => 'gma', 'Glyma.17G012600' => 'gma', 'Gohir.A06G148600' => 'ghi', 'Gohir.A07G115800' => 'ghi', 'Gohir.A08G003600' => 'ghi', 'Gohir.A09G093300' => 'ghi', 'Gohir.A09G105400' => 'ghi', 'Gohir.A09G105500' => 'ghi', 'Gohir.D06G154600' => 'ghi', 'Gohir.D07G120200' => 'ghi', 'Gohir.D08G013900' => 'ghi', 'Gohir.D09G093100' => 'ghi', 'Gohir.D09G102200' => 'ghi', 'Gohir.D09G102300' => 'ghi', 'Gorai.001G129400' => 'gra', 'Gorai.004G008200' => 'gra', 'Gorai.006G109800' => 'gra', 'Gorai.006G119500' => 'gra', 'Gorai.006G121300' => 'gra', 'Gorai.010G180700' => 'gra', 'GSVIVG01012716001' => 'vvi', 'GSVIVG01025118001' => 'vvi', 'GSVIVG01030439001' => 'vvi', 'GSVIVG01031397001' => 'vvi', 'HanXRQChr01g0004201' => 'han', 'HanXRQChr02g0054941' => 'han', 'HanXRQChr05g0141811' => 'han', 'HanXRQChr07g0197751' => 'han', 'HanXRQChr11g0346691' => 'han', 'HanXRQChr13g0396971' => 'han', 'HanXRQChr14g0432951' => 'han', 'HanXRQChr14g0452001' => 'han', 'HanXRQChr15g0496681' => 'han', 'HanXRQChr17g0557491' => 'han', 'HanXRQChr17g0557501' => 'han', 'Haze_06809' => 'cav', 'Haze_12852' => 'cav', 'Haze_15850' => 'cav', 'Haze_23446' => 'cav', 'Haze_23942' => 'cav', 'Haze_23943' => 'cav', 'Hma1.2p1_0091F.1_g046450' => 'hma', 'Hma1.2p1_0128F.1_g059910' => 'hma', 'Hma1.2p1_0249F.1_g102260' => 'hma', 'Hma1.2p1_0453F.1_g156190' => 'hma', 'Hma1.2p1_0695F.1_g204380' => 'hma', 'Hma1.2p1_0749F.1_g212650' => 'hma', 'Hma1.2p1_2156F.1_g315420' => 'hma', 'Hma1.2p1_2686F.1_g326940' => 'hma', 'HPP92_006428' => 'vpl', 'HPP92_012069' => 'vpl', 'HPP92_014129' => 'vpl', 'HPP92_014133' => 'vpl', 'HPP92_017315' => 'vpl', 'HPP92_026445' => 'vpl', 'HPP92_026446' => 'vpl', 'Hund00774' => 'sun', 'Hund07682' => 'sun', 'Hund21413' => 'sun', 'Hund23462' => 'sun', 'Hund23463' => 'sun', 'Lalb_Chr03g0027911' => 'lal', 'Lalb_Chr13g0304271' => 'lal', 'Lalb_Chr19g0137471' => 'lal', 'Lalb_Chr22g0350651' => 'lal', 'Lalb_Chr24g0395151' => 'lal', 'Lj1A1231T40' => 'lonja', 'Lj1A221T48' => 'lonja', 'Lj1C924T12' => 'lonja', 'Lj2C993G6' => 'lonja', 'Lj3g0005790' => 'lja', 'Lj3g0015432' => 'lja', 'Lj3g0017722' => 'lja', 'Lj3g0018497' => 'lja', 'Lj4g0025071' => 'lja', 'Lsat_1_v5_gn_1_129680' => 'lsa', 'Lsat_1_v5_gn_2_25321' => 'lsa', 'Lsat_1_v5_gn_2_95461' => 'lsa', 'Lsat_1_v5_gn_4_159620' => 'lsa', 'Lsat_1_v5_gn_6_41301' => 'lsa', 'Lsat_1_v5_gn_6_74660' => 'lsa', 'Lsat_1_v5_gn_7_11520' => 'lsa', 'Lsat_1_v5_gn_9_67680' => 'lsa', 'Manes.04G008300' => 'mes', 'Manes.04G008400' => 'mes', 'Manes.04G026500' => 'mes', 'Manes.10G135300' => 'mes', 'Manes.11G157300' => 'mes', 'Manes.12G074000' => 'mes', 'Manes.16G006200' => 'mes', 'Manes.17G026400' => 'mes', 'Mapoly0024s0086' => 'mpo', 'Mapoly0024s0087' => 'mpo', 'Mapoly0071s0057' => 'mpo', 'Mapoly0204s0012' => 'mpo', 'MBI04_g37681_MAGBIO' => 'mbi', 'MBI05_g17779_MAGBIO' => 'mbi', 'MBI12_g31184_MAGBIO' => 'mbi', 'MBI17_g11083_MAGBIO' => 'mbi', 'MBI18_g03883_MAGBIO' => 'mbi', 'MBI18_g28940_MAGBIO' => 'mbi', 'MCO01G690' => 'mco', 'MD03G1109900' => 'mdo', 'MD03G1134800' => 'mdo', 'MD05G1348000' => 'mdo', 'MD10G1322400' => 'mdo', 'MD11G1123300' => 'mdo', 'MD11G1157600' => 'mdo', 'Medtr2g084875' => 'mtr', 'Medtr2g088130' => 'mtr', 'Medtr4g055310' => 'mtr', 'Medtr4g061070' => 'mtr', 'Medtr4g132250' => 'mtr', 'MELO3C004795.2' => 'cme', 'MELO3C004797.2' => 'cme', 'MELO3C007396.2' => 'cme', 'MELO3C019277.2' => 'cme', 'MELO3C021449.2' => 'cme', 'MELO3C025736.2' => 'cme', 'Migut.D02175' => 'egut', 'Migut.H01573' => 'egut', 'Migut.M01327' => 'egut', 'Migut.N02513' => 'egut', 'MSTRG.14638' => 'ama', 'MSTRG.18632' => 'ama', 'MSTRG.7203' => 'ama', 'Nitab4.5_0000533g0140' => 'nta', 'Nitab4.5_0000888g0150' => 'nta', 'Nitab4.5_0001453g0040' => 'nta', 'Nitab4.5_0002827g0090' => 'nta', 'Nitab4.5_0003082g0040' => 'nta', 'Nitab4.5_0007799g0040' => 'nta', 'Nitab4.5_0008983g0010' => 'nta', 'Nitab4.5_0009017g0020' => 'nta', 'Nn1g02132' => 'nnu', 'Nn1g03492' => 'nnu', 'Nn1g03493' => 'nnu', 'Nn1g03494' => 'nnu', 'Nn1g07164' => 'nnu', 'Nn1g07291' => 'nnu', 'Nn2g10655' => 'nnu', 'Nn2g11652' => 'nnu', 'Nn2g14008' => 'nnu', 'Nn3g17476' => 'nnu', 'Nn3g17477' => 'nnu', 'Nn4g22370' => 'nnu', 'Nn4g25255' => 'nnu', 'Nn5g27755' => 'nnu', 'Nn6g34260' => 'nnu', 'Nn6g35041' => 'nnu', 'Oeu005924.1' => 'oeu', 'Oeu008383.1' => 'oeu', 'Oeu014928.1' => 'oeu', 'Oeu019889.1' => 'oeu', 'Oeu022271.1' => 'oeu', 'Oeu025271.1' => 'oeu', 'Oeu036302.1' => 'oeu', 'Oeu044100.1' => 'oeu', 'Os01g0528300' => 'osa', 'Os03g0286200' => 'osa', 'Os04g0406600' => 'osa', 'Os07g0512000' => 'osa', 'Os07g0694600' => 'osa', 'Os08g0411000' => 'osa', 'Os09g0565700' => 'osa', 'Os09g0566050' => 'osa', 'Os10g0523700' => 'osa', 'Peaxi162Scf00002g00514' => 'pax', 'Peaxi162Scf00047g01817' => 'pax', 'Peaxi162Scf00114g00001' => 'pax', 'Peaxi162Scf00147g00613' => 'pax', 'Peaxi162Scf00389g00425' => 'pax', 'PGR042G1139' => 'pgr', 'PGR042G3273' => 'pgr', 'PGR102G2180' => 'pgr', 'PGR119G0234' => 'pgr', 'PGR119G0668' => 'pgr', 'PGSC0003DMG400007122' => 'stu', 'PGSC0003DMG400016478' => 'stu', 'PGSC0003DMG400025374' => 'stu', 'PGSC0003DMG400026536' => 'stu', 'Phvul.003G079600' => 'pvu', 'Phvul.005G115600' => 'pvu', 'Phvul.005G127100' => 'pvu', 'Phvul.006G149500' => 'pvu', 'Phvul.006G149600' => 'pvu', 'Phvul.011G071800' => 'pvu', 'Phvul.011G090400' => 'pvu', 'Potri.004G013400' => 'ptr', 'Potri.004G188100' => 'ptr', 'Potri.008G195500' => 'ptr', 'Potri.009G148800' => 'ptr', 'Potri.011G004700' => 'ptr', 'Pp3c17_22810' => 'ppa', 'Pp3c18_4480' => 'ppa', 'Pp3c19_13030' => 'ppa', 'Pp3c1_33620' => 'ppa', 'Pp3c2_9380' => 'ppa', 'PRCOL_00001023' => 'pco', 'Prupe.3G216300' => 'ppe', 'Prupe.4G019500' => 'ppe', 'Prupe.6G092500' => 'ppe', 'Prupe.6G119200' => 'ppe', 'Psat0s1945g0080' => 'psa', 'Psat0s4167g0040' => 'psa', 'Psat1g185800' => 'psa', 'Psat4g006440' => 'psa', 'Psat4g006480' => 'psa', 'Psat4g168120' => 'psa', 'Psat5g255680' => 'psa', 'Psat5g261760' => 'psa', 'Psat7g222120' => 'psa', 'PSO063G7252' => 'pso', 'PSO170G4778' => 'pso', 'PSO210G2249' => 'pso', 'PSO339G2411' => 'pso', 'PSO339G2457' => 'pso', 'PSO339G2854' => 'pso', 'PSO339G4288' => 'pso', 'PSO339G4615' => 'pso', 'PSO384G2796' => 'pso', 'PSO384G2940' => 'pso', 'PSO384G4227' => 'pso', 'PSO478G1425' => 'pso', 'PSO541G3863' => 'pso', 'PSO675G0507' => 'pso', 'PSO782G0338' => 'pso', 'PSO832G0644' => 'pso', 'QL01p013664' => 'qlo', 'QL01p036598' => 'qlo', 'QL05p072984' => 'qlo', 'QL08p005768' => 'qlo', 'QL08p032743' => 'qlo', 'QL93p0073_0439' => 'qlo', 'QL93p0073_0444' => 'qlo', 'RcHm_v2.0_Chr5g0002851' => 'rch', 'RcHm_v2.0_Chr5g0055201' => 'rch', 'RcHm_v2.0_Chr5g0061191' => 'rch', 'RcHm_v2.0_Chr7g0203231' => 'rch', 'Rhsim01G0208100' => 'rsi', 'Rhsim01G0208200' => 'rsi', 'Rhsim02G0106500' => 'rsi', 'Rhsim03G0107900' => 'rsi', 'Rhsim06G0163400' => 'rsi', 'Rhsim13G0105200' => 'rsi', 'Sabra04G0006300' => 'sbr', 'Sabra04G0127000' => 'sbr', 'Sabra08G0148700' => 'sbr', 'Sabra09G0117400' => 'sbr', 'SalBow1G3326' => 'sbo', 'SalBow3G3228' => 'sbo', 'SalBow6G1634' => 'sbo', 'SalBow6G3603' => 'sbo', 'SalBow6G5266' => 'sbo', 'SalBow7G2265' => 'sbo', 'SalBow8G0850' => 'sbo', 'SalBow8G2592' => 'sbo', 'Sc05g0009240' => 'sci', 'Sc12g0002300' => 'sci', 'Sc21g0000100' => 'sci', 'Sc21g0004720' => 'sci', 'Sed0002949' => 'sed', 'Sed0004114' => 'sed', 'Sed0004306' => 'sed', 'Sed0006172' => 'sed', 'Sed0008413' => 'sed', 'Sed0013809' => 'sed', 'Sed0019556' => 'sed', 'SEGI_03570' => 'sgi', 'SEGI_07859' => 'sgi', 'SEGI_15042' => 'sgi', 'SEGI_16263' => 'sgi', 'SEGI_16552' => 'sgi', 'SEGI_24331' => 'sgi', 'SEGI_27316' => 'sgi', 'SEGI_29521' => 'sgi', 'SEGI_41342' => 'sgi', 'SGA_v2.0_scaffold27G11617' => 'sas', 'SGA_v2.0_scaffold316G48428' => 'sas', 'SGA_v2.0_scaffold49G18261' => 'sas', 'SGA_v2.0_scaffold7G03831' => 'sas', 'SGA_v2.0_scaffold93G28359' => 'sas', 'SHI02210' => 'shi', 'SHI06028' => 'shi', 'SHI06321' => 'shi', 'SMO111G0012' => 'smo', 'SMO228G0080' => 'smo', 'SMO356G0756' => 'smo', 'Solyc02g080620.3' => 'sly', 'Solyc06g074530.1' => 'sly', 'Solyc11g066890.1' => 'sly', 'Solyc11g072520.3' => 'sly', 'Sopen02g025330' => 'spe', 'Sopen06g031000' => 'spe', 'Sopen09g008240' => 'spe', 'Sopen09g025210' => 'spe', 'Sopen11g026600' => 'spe', 'Sopen11g030170' => 'spe', 'Sp1g10420' => 'spa', 'Sp3g06570' => 'spa', 'Sp4g10660' => 'spa', 'Sp5g16460' => 'spa', 'Sp6g22710' => 'spa', 'TAR365G0112' => 'tar', 'TAR369G0717' => 'tar', 'TAR374G0976' => 'tar', 'TAR623G1128' => 'tar', 'TAR626G1937' => 'tar', 'TAR627G0123' => 'tar', 'TAR628G0305' => 'tar', 'TAR636G1176' => 'tar', 'TAR636G2442' => 'tar', 'THA.LOC104800556' => 'tha', 'THA.LOC104809501' => 'tha', 'THA.LOC104815126' => 'tha', 'THA.LOC104815732' => 'tha', 'THA.LOC104823528' => 'tha', 'Thecc.02G365600' => 'tca', 'Thecc.06G222300' => 'tca', 'Thecc.09G261800' => 'tca', 'Thecc.09G291400' => 'tca', 'Thhalv10003028m.g' => 'esa', 'Thhalv10007886m.g' => 'esa', 'Thhalv10016085m.g' => 'esa', 'Thhalv10016681m.g' => 'esa', 'Thhalv10020951m.g' => 'esa', 'TPR.G15598' => 'tpr', 'TPR.G29305' => 'tpr', 'TPR.G32395' => 'tpr', 'TPR.G36998' => 'tpr', 'TPR.G4227' => 'tpr', 'TWI18G1433' => 'twi', 'TWI31G0755' => 'twi', 'TWI38G0912' => 'twi', 'TWI75G1097' => 'twi', 'TWI75G1619' => 'twi', 'TWI79G1336' => 'twi', 'unitig_0.g943' => 'ugi', 'unitig_0.g944' => 'ugi', 'unitig_22.g6646' => 'ugi', 'unitig_37.g12681' => 'ugi', 'unitig_8.g3290' => 'ugi', 'vmacro03278' => 'vma', 'vmacro12197' => 'vma', 'vmacro14478' => 'vma', 'vmacro15787' => 'vma', 'vmacro15789' => 'vma', 'vmacro15790' => 'vma', 'vmacro15806' => 'vma', 'vmacro22907' => 'vma', 'vmacro22908' => 'vma', 'vmacro22909' => 'vma', 'vmacro23108' => 'vma', 'VMungo0540G0540' => 'vmu', 'VMungo0540G2468' => 'vmu', 'VMungo1080G0390' => 'vmu', 'VMungo1080G1165' => 'vmu', 'VMungo1127G0170' => 'vmu', 'VMungo1127G2099' => 'vmu', 'VMungo1215G3013' => 'vmu', 'Zm00001eb013110' => 'zma', 'Zm00001eb084260' => 'zma', 'Zm00001eb096110' => 'zma', 'Zm00001eb217510' => 'zma', 'Zm00001eb322550' => 'zma', 'Zm00001eb390770' => 'zma', 'Zm00001eb397170' => 'zma', 'Zm00001eb404610' => 'zma', 'Zm00001eb421790' => 'zma' ) $gf_id = 'HOM05D000911' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000911' ) $data_identifier = 'HOM05D000911' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 16, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 5, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 6, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 8, 'nnu' => (int) 16, 'oeu' => (int) 8, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 5, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 16, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421790' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000911', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27780' => 'bna', 'A03p35380' => 'bna', 'A04p21160' => 'bna', 'A05p40570' => 'bna', 'A06p26900' => 'bna', 'A08p33230' => 'bna', 'A09p65960' => 'bna', 'A10p18290' => 'bna', 'Aa31LG1G12990' => 'aar', 'Aa31LG1G2980' => 'aar', 'Aa31LG4G14320' => 'aar', 'Aa31LG7G11800' => 'aar', 'Aa31sc36G50' => 'aar', 'Aa31sc36G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3721' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5459' => 'aag', 'Actinidia03028' => 'ach', 'Actinidia03753' => 'ach', 'Actinidia04187' => 'ach', 'Actinidia05509' => 'ach', 'Actinidia24180' => 'ach', 'Actinidia26906' => 'ach', 'Actinidia37097' => 'ach', 'Actinidia38249' => 'ach', 'Ah.01g003470' => 'amhyb', 'Ah.01g004580' => 'amhyb', 'Ah.01g014850' => 'amhyb', 'Ah.01g016830' => 'amhyb', 'Ah.14g088000' => 'amhyb', 'AL1G22980' => 'aly', 'AL3G18990' => 'aly', 'AL4G22440' => 'aly', 'AL4G33180' => 'aly', 'AL5G22920' => 'aly', 'AL6G33660' => 'aly', 'AL8G20720' => 'aly', 'Aqoxy1G00935' => 'aox', 'Aqoxy1G02094' => 'aox', 'Aqoxy2G01239' => 'aox', 'Aqoxy4G01870' => 'aox', 'Aqoxy7G00450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.36ZVTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71EM27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5D6C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH3WRE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3NCM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RIM768' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YB5YRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z36GDV' => 'arhy', 'AT1G08250' => 'ath', 'AT1G11790' => 'ath', 'AT2G27820' => 'ath', 'AT3G07630' => 'ath', 'AT3G44720' => 'ath', 'AT5G22630' => 'ath', 'ATR0693G304' => 'atr', 'ATR0794G109' => 'atr', 'ATR0820G120' => 'atr', 'ATR1159G064' => 'atr', 'Atru.chr10.2239' => 'acertr', 'Atru.chr3.3371' => 'acertr', 'Atru.chr6.3202' => 'acertr', 'AUR62006499' => 'cqu', 'AUR62012718' => 'cqu', 'AUR62021938' => 'cqu', 'AUR62023932' => 'cqu', 'AUR62025034' => 'cqu', 'AUR62025035' => 'cqu', 'AUR62038307' => 'cqu', 'AUR62043466' => 'cqu', 'BcaB02g10748' => 'bca', 'BcaB03g13231' => 'bca', 'BcaB03g14689' => 'bca', 'BcaB05g22716' => 'bca', 'BcaB06g28172' => 'bca', 'BcaB08g36413' => 'bca', 'BcaC01g02186' => 'bca', 'BcaC01g04272' => 'bca', 'BcaC02g08080' => 'bca', 'BcaC02g08227' => 'bca', 'BcaC03g13901' => 'bca', 'BcaC04g19593' => 'bca', 'BcaC04g20874' => 'bca', 'BcaC05g29557' => 'bca', 'BcaC06g35505' => 'bca', 'BcaC07g41954' => 'bca', 'BcaC07g41955' => 'bca', 'BcaC07g41956' => 'bca', 'BcaC07g42519' => 'bca', 'BcaC07g42520' => 'bca', 'BcaC07g42523' => 'bca', 'BcaC07g42524' => 'bca', 'BcaC07g42525' => 'bca', 'BcaC08g47480' => 'bca', 'BcaC08g47481' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00530' => 'bna', 'BolC2t07178H' => 'bol', 'BolC3t16567H' => 'bol', 'BolC4t27234H' => 'bol', 'BolC5t29728H' => 'bol', 'BolC5t34622H' => 'bol', 'BolC6t40321H' => 'bol', 'BolC7t42028H' => 'bol', 'BolC8t49125H' => 'bol', 'BolC8t52538H' => 'bol', 'BolC8t52539H' => 'bol', 'BolC9t56681H' => 'bol', 'BolC9t58266H' => 'bol', 'BolSC21t60294H' => 'bol', 'BraA02t05670Z' => 'bra', 'BraA03t12716Z' => 'bra', 'BraA04t17685Z' => 'bra', 'BraA05t22788Z' => 'bra', 'BraA06t24032Z' => 'bra', 'BraA06t25625Z' => 'bra', 'BraA07t27930Z' => 'bra', 'BraA08t35242Z' => 'bra', 'BraA09t38609Z' => 'bra', 'BraA10t43905Z' => 'bra', 'C02p11060' => 'bna', 'C03p42990' => 'bna', 'C03p67310' => 'bna', 'C04p56990' => 'bna', 'C04p58660' => 'bna', 'C05p09890' => 'bna', 'C05p59680' => 'bna', 'C06p19830' => 'bna', 'C06p53040' => 'bna', 'C07p15230' => 'bna', 'C08p50070' => 'bna', 'C08p50090' => 'bna', 'C09p38330' => 'bna', 'C09p53940' => 'bna', 'CAN.G1014.1' => 'can', 'CAN.G644.30' => 'can', 'CAN.G84.47' => 'can', 'CAN.G919.8' => 'can', 'CANSAT54G0113' => 'cansat', 'CANSAT54G1286' => 'cansat', 'CANSAT64G1020' => 'cansat', 'CARHR008080' => 'chi', 'CARHR008090' => 'chi', 'CARHR012130' => 'chi', 'CARHR038390' => 'chi', 'CARHR082330' => 'chi', 'CARHR120520' => 'chi', 'CARHR151470' => 'chi', 'CARHR190950' => 'chi', 'Carub.0001s0760' => 'cru', 'Carub.0001s1146' => 'cru', 'Carub.0003s0721' => 'cru', 'Carub.0004s0858' => 'cru', 'Carub.0005s1040' => 'cru', 'Carub.0006s2035' => 'cru', 'Carub.0015s0005' => 'cru', 'Ca_01607_v3' => 'car', 'Ca_01677_v3' => 'car', 'Ca_06087_v3' => 'car', 'Ca_19238_v3' => 'car', 'Ca_19373_v3' => 'car', 'Ca_21079_v3' => 'car', 'CBR_g54016' => 'cbr', 'CBR_g54018' => 'cbr', 'CBR_g54020' => 'cbr', 'Cc01_g09780' => 'ccan', 'Cc01_g11680' => 'ccan', 'Cc02_g15610' => 'ccan', 'Cc05_g04350' => 'ccan', 'Cc09_g01580' => 'ccan', 'CDE01G0795' => 'cde', 'CDE02G2024' => 'cde', 'CDE02G2260' => 'cde', 'CDE02G4561' => 'cde', 'CDE05G2733' => 'cde', 'CDE05G3422' => 'cde', 'CDE06G2003' => 'cde', 'CDE08G0576' => 'cde', 'CDE09G0048' => 'cde', 'CDE11G0805' => 'cde', 'Cfa003644' => 'cfa', 'Cfa006290' => 'cfa', 'Cfa010080' => 'cfa', 'Cfa011376' => 'cfa', 'Cfa011576' => 'cfa', 'Cfa011577' => 'cfa', 'Cfa014389' => 'cfa', 'Ciclev10006044m.g' => 'ccl', 'Ciclev10006954m.g' => 'ccl', 'Ciclev10015131m.g' => 'ccl', 'Ciclev10015580m.g' => 'ccl', 'Ciclev10028359m.g' => 'ccl', 'Ciclev10028573m.g' => 'ccl', 'CiPaw.03G159300' => 'cil', 'CiPaw.04G115100' => 'cil', 'CiPaw.09G092800' => 'cil', 'CiPaw.10G071800' => 'cil', 'CiPaw.13G105800' => 'cil', 'CiPaw.13G141000' => 'cil', 'CiPaw.14G103400' => 'cil', 'ClCG01G012700' => 'cla', 'ClCG01G012720' => 'cla', 'ClCG01G021920' => 'cla', 'ClCG02G008870' => 'cla', 'ClCG02G020840' => 'cla', 'ClCG02G021930' => 'cla', 'COL.COLO4_19302' => 'col', 'COL.COLO4_25262' => 'col', 'COL.COLO4_31788' => 'col', 'Cpa.g.c34684' => 'cpa', 'Cpa.g.c36520.1' => 'cpa', 'Cpa.g.c45626' => 'cpa', 'Cpa.g.sc121.17' => 'cpa', 'Cpa.g.sc13.22' => 'cpa', 'Cpa.g.sc87.88' => 'cpa', 'Cre06.g261800' => 'cre', 'CsaV3_1G014500' => 'csa', 'CsaV3_1G014510' => 'csa', 'CsaV3_2G034880' => 'csa', 'CsaV3_6G014760' => 'csa', 'CsaV3_6G021500' => 'csa', 'CsaV3_6G048980' => 'csa', 'CSS0002511' => 'camsi', 'CSS0007556' => 'camsi', 'CSS0008532' => 'camsi', 'CSS0009709' => 'camsi', 'CSS0010486' => 'camsi', 'CSS0016768' => 'camsi', 'CSS0023512' => 'camsi', 'CSS0025341' => 'camsi', 'CSS0027999' => 'camsi', 'CSS0028944' => 'camsi', 'CSS0032292' => 'camsi', 'CSS0032464' => 'camsi', 'CSS0037153' => 'camsi', 'CSS0039256' => 'camsi', 'CSS0048392' => 'camsi', 'CSS0050458' => 'camsi', 'DCAR_004224' => 'dca', 'DCAR_006147' => 'dca', 'DCAR_006465' => 'dca', 'DCAR_008159' => 'dca', 'DCAR_012164' => 'dca', 'DCAR_019764' => 'dca', 'Dinv05418' => 'din', 'Dinv10839' => 'din', 'Dinv12521' => 'din', 'Dinv13900' => 'din', 'Dinv29426' => 'din', 'Duzib150G0263' => 'dzi', 'Duzib168G1178' => 'dzi', 'Duzib168G1924' => 'dzi', 'Duzib170G0299' => 'dzi', 'Duzib170G0813' => 'dzi', 'Duzib235G1128' => 'dzi', 'Duzib248G1060' => 'dzi', 'ECA232G1910' => 'eca', 'ECA233G4621' => 'eca', 'ECA238G1216' => 'eca', 'ECA238G1784' => 'eca', 'ECA248G1242' => 'eca', 'EL10Ac8g20071' => 'bvu', 'EL10Ac9g21086' => 'bvu', 'EL10Ac9g22407' => 'bvu', 'EL10Ac9g22412' => 'bvu', 'Eucgr.A01119' => 'egr', 'Eucgr.E04043' => 'egr', 'Eucgr.J00428' => 'egr', 'Eucgr.J00958' => 'egr', 'FAN11G3091' => 'fan', 'FAN11G3651' => 'fan', 'FAN16G2566' => 'fan', 'FAN21G3155' => 'fan', 'FAN21G3400' => 'fan', 'FAN21G3543' => 'fan', 'FAN25G0234' => 'fan', 'FAN25G1422' => 'fan', 'FAN25G3392' => 'fan', 'FvH4_3g01940' => 'fve', 'FvH4_3g29870' => 'fve', 'FvH4_3g33680' => 'fve', 'Glyma.09G004200' => 'gma', 'Glyma.11G151288' => 'gma', 'Glyma.11G189100' => 'gma', 'Glyma.12G072500' => 'gma', 'Glyma.12G085500' => 'gma', 'Glyma.12G181800' => 'gma', 'Glyma.12G193000' => 'gma', 'Glyma.13G309300' => 'gma', 'Glyma.13G319000' => 'gma', 'Glyma.17G012600' => 'gma', 'Gohir.A06G148600' => 'ghi', 'Gohir.A07G115800' => 'ghi', 'Gohir.A08G003600' => 'ghi', 'Gohir.A09G093300' => 'ghi', 'Gohir.A09G105400' => 'ghi', 'Gohir.A09G105500' => 'ghi', 'Gohir.D06G154600' => 'ghi', 'Gohir.D07G120200' => 'ghi', 'Gohir.D08G013900' => 'ghi', 'Gohir.D09G093100' => 'ghi', 'Gohir.D09G102200' => 'ghi', 'Gohir.D09G102300' => 'ghi', 'Gorai.001G129400' => 'gra', 'Gorai.004G008200' => 'gra', 'Gorai.006G109800' => 'gra', 'Gorai.006G119500' => 'gra', 'Gorai.006G121300' => 'gra', 'Gorai.010G180700' => 'gra', 'GSVIVG01012716001' => 'vvi', 'GSVIVG01025118001' => 'vvi', 'GSVIVG01030439001' => 'vvi', 'GSVIVG01031397001' => 'vvi', 'HanXRQChr01g0004201' => 'han', 'HanXRQChr02g0054941' => 'han', 'HanXRQChr05g0141811' => 'han', 'HanXRQChr07g0197751' => 'han', 'HanXRQChr11g0346691' => 'han', 'HanXRQChr13g0396971' => 'han', 'HanXRQChr14g0432951' => 'han', 'HanXRQChr14g0452001' => 'han', 'HanXRQChr15g0496681' => 'han', 'HanXRQChr17g0557491' => 'han', 'HanXRQChr17g0557501' => 'han', 'Haze_06809' => 'cav', 'Haze_12852' => 'cav', 'Haze_15850' => 'cav', 'Haze_23446' => 'cav', 'Haze_23942' => 'cav', 'Haze_23943' => 'cav', 'Hma1.2p1_0091F.1_g046450' => 'hma', 'Hma1.2p1_0128F.1_g059910' => 'hma', 'Hma1.2p1_0249F.1_g102260' => 'hma', 'Hma1.2p1_0453F.1_g156190' => 'hma', 'Hma1.2p1_0695F.1_g204380' => 'hma', 'Hma1.2p1_0749F.1_g212650' => 'hma', 'Hma1.2p1_2156F.1_g315420' => 'hma', 'Hma1.2p1_2686F.1_g326940' => 'hma', 'HPP92_006428' => 'vpl', 'HPP92_012069' => 'vpl', 'HPP92_014129' => 'vpl', 'HPP92_014133' => 'vpl', 'HPP92_017315' => 'vpl', 'HPP92_026445' => 'vpl', 'HPP92_026446' => 'vpl', 'Hund00774' => 'sun', 'Hund07682' => 'sun', 'Hund21413' => 'sun', 'Hund23462' => 'sun', 'Hund23463' => 'sun', 'Lalb_Chr03g0027911' => 'lal', 'Lalb_Chr13g0304271' => 'lal', 'Lalb_Chr19g0137471' => 'lal', 'Lalb_Chr22g0350651' => 'lal', 'Lalb_Chr24g0395151' => 'lal', 'Lj1A1231T40' => 'lonja', 'Lj1A221T48' => 'lonja', 'Lj1C924T12' => 'lonja', 'Lj2C993G6' => 'lonja', 'Lj3g0005790' => 'lja', 'Lj3g0015432' => 'lja', 'Lj3g0017722' => 'lja', 'Lj3g0018497' => 'lja', 'Lj4g0025071' => 'lja', 'Lsat_1_v5_gn_1_129680' => 'lsa', 'Lsat_1_v5_gn_2_25321' => 'lsa', 'Lsat_1_v5_gn_2_95461' => 'lsa', 'Lsat_1_v5_gn_4_159620' => 'lsa', 'Lsat_1_v5_gn_6_41301' => 'lsa', 'Lsat_1_v5_gn_6_74660' => 'lsa', 'Lsat_1_v5_gn_7_11520' => 'lsa', 'Lsat_1_v5_gn_9_67680' => 'lsa', 'Manes.04G008300' => 'mes', 'Manes.04G008400' => 'mes', 'Manes.04G026500' => 'mes', 'Manes.10G135300' => 'mes', 'Manes.11G157300' => 'mes', 'Manes.12G074000' => 'mes', 'Manes.16G006200' => 'mes', 'Manes.17G026400' => 'mes', 'Mapoly0024s0086' => 'mpo', 'Mapoly0024s0087' => 'mpo', 'Mapoly0071s0057' => 'mpo', 'Mapoly0204s0012' => 'mpo', 'MBI04_g37681_MAGBIO' => 'mbi', 'MBI05_g17779_MAGBIO' => 'mbi', 'MBI12_g31184_MAGBIO' => 'mbi', 'MBI17_g11083_MAGBIO' => 'mbi', 'MBI18_g03883_MAGBIO' => 'mbi', 'MBI18_g28940_MAGBIO' => 'mbi', 'MCO01G690' => 'mco', 'MD03G1109900' => 'mdo', 'MD03G1134800' => 'mdo', 'MD05G1348000' => 'mdo', 'MD10G1322400' => 'mdo', 'MD11G1123300' => 'mdo', 'MD11G1157600' => 'mdo', 'Medtr2g084875' => 'mtr', 'Medtr2g088130' => 'mtr', 'Medtr4g055310' => 'mtr', 'Medtr4g061070' => 'mtr', 'Medtr4g132250' => 'mtr', 'MELO3C004795.2' => 'cme', 'MELO3C004797.2' => 'cme', 'MELO3C007396.2' => 'cme', 'MELO3C019277.2' => 'cme', 'MELO3C021449.2' => 'cme', 'MELO3C025736.2' => 'cme', 'Migut.D02175' => 'egut', 'Migut.H01573' => 'egut', 'Migut.M01327' => 'egut', 'Migut.N02513' => 'egut', 'MSTRG.14638' => 'ama', 'MSTRG.18632' => 'ama', 'MSTRG.7203' => 'ama', 'Nitab4.5_0000533g0140' => 'nta', 'Nitab4.5_0000888g0150' => 'nta', 'Nitab4.5_0001453g0040' => 'nta', 'Nitab4.5_0002827g0090' => 'nta', 'Nitab4.5_0003082g0040' => 'nta', 'Nitab4.5_0007799g0040' => 'nta', 'Nitab4.5_0008983g0010' => 'nta', 'Nitab4.5_0009017g0020' => 'nta', 'Nn1g02132' => 'nnu', 'Nn1g03492' => 'nnu', 'Nn1g03493' => 'nnu', 'Nn1g03494' => 'nnu', 'Nn1g07164' => 'nnu', 'Nn1g07291' => 'nnu', 'Nn2g10655' => 'nnu', 'Nn2g11652' => 'nnu', 'Nn2g14008' => 'nnu', 'Nn3g17476' => 'nnu', 'Nn3g17477' => 'nnu', 'Nn4g22370' => 'nnu', 'Nn4g25255' => 'nnu', 'Nn5g27755' => 'nnu', 'Nn6g34260' => 'nnu', 'Nn6g35041' => 'nnu', 'Oeu005924.1' => 'oeu', 'Oeu008383.1' => 'oeu', 'Oeu014928.1' => 'oeu', 'Oeu019889.1' => 'oeu', 'Oeu022271.1' => 'oeu', 'Oeu025271.1' => 'oeu', 'Oeu036302.1' => 'oeu', 'Oeu044100.1' => 'oeu', 'Os01g0528300' => 'osa', 'Os03g0286200' => 'osa', 'Os04g0406600' => 'osa', 'Os07g0512000' => 'osa', 'Os07g0694600' => 'osa', 'Os08g0411000' => 'osa', 'Os09g0565700' => 'osa', 'Os09g0566050' => 'osa', 'Os10g0523700' => 'osa', 'Peaxi162Scf00002g00514' => 'pax', 'Peaxi162Scf00047g01817' => 'pax', 'Peaxi162Scf00114g00001' => 'pax', 'Peaxi162Scf00147g00613' => 'pax', 'Peaxi162Scf00389g00425' => 'pax', 'PGR042G1139' => 'pgr', 'PGR042G3273' => 'pgr', 'PGR102G2180' => 'pgr', 'PGR119G0234' => 'pgr', 'PGR119G0668' => 'pgr', 'PGSC0003DMG400007122' => 'stu', 'PGSC0003DMG400016478' => 'stu', 'PGSC0003DMG400025374' => 'stu', 'PGSC0003DMG400026536' => 'stu', 'Phvul.003G079600' => 'pvu', 'Phvul.005G115600' => 'pvu', 'Phvul.005G127100' => 'pvu', 'Phvul.006G149500' => 'pvu', 'Phvul.006G149600' => 'pvu', 'Phvul.011G071800' => 'pvu', 'Phvul.011G090400' => 'pvu', 'Potri.004G013400' => 'ptr', 'Potri.004G188100' => 'ptr', 'Potri.008G195500' => 'ptr', 'Potri.009G148800' => 'ptr', 'Potri.011G004700' => 'ptr', 'Pp3c17_22810' => 'ppa', 'Pp3c18_4480' => 'ppa', 'Pp3c19_13030' => 'ppa', 'Pp3c1_33620' => 'ppa', 'Pp3c2_9380' => 'ppa', 'PRCOL_00001023' => 'pco', 'Prupe.3G216300' => 'ppe', 'Prupe.4G019500' => 'ppe', 'Prupe.6G092500' => 'ppe', 'Prupe.6G119200' => 'ppe', 'Psat0s1945g0080' => 'psa', 'Psat0s4167g0040' => 'psa', 'Psat1g185800' => 'psa', 'Psat4g006440' => 'psa', 'Psat4g006480' => 'psa', 'Psat4g168120' => 'psa', 'Psat5g255680' => 'psa', 'Psat5g261760' => 'psa', 'Psat7g222120' => 'psa', 'PSO063G7252' => 'pso', 'PSO170G4778' => 'pso', 'PSO210G2249' => 'pso', 'PSO339G2411' => 'pso', 'PSO339G2457' => 'pso', 'PSO339G2854' => 'pso', 'PSO339G4288' => 'pso', 'PSO339G4615' => 'pso', 'PSO384G2796' => 'pso', 'PSO384G2940' => 'pso', 'PSO384G4227' => 'pso', 'PSO478G1425' => 'pso', 'PSO541G3863' => 'pso', 'PSO675G0507' => 'pso', 'PSO782G0338' => 'pso', 'PSO832G0644' => 'pso', 'QL01p013664' => 'qlo', 'QL01p036598' => 'qlo', 'QL05p072984' => 'qlo', 'QL08p005768' => 'qlo', 'QL08p032743' => 'qlo', 'QL93p0073_0439' => 'qlo', 'QL93p0073_0444' => 'qlo', 'RcHm_v2.0_Chr5g0002851' => 'rch', 'RcHm_v2.0_Chr5g0055201' => 'rch', 'RcHm_v2.0_Chr5g0061191' => 'rch', 'RcHm_v2.0_Chr7g0203231' => 'rch', 'Rhsim01G0208100' => 'rsi', 'Rhsim01G0208200' => 'rsi', 'Rhsim02G0106500' => 'rsi', 'Rhsim03G0107900' => 'rsi', 'Rhsim06G0163400' => 'rsi', 'Rhsim13G0105200' => 'rsi', 'Sabra04G0006300' => 'sbr', 'Sabra04G0127000' => 'sbr', 'Sabra08G0148700' => 'sbr', 'Sabra09G0117400' => 'sbr', 'SalBow1G3326' => 'sbo', 'SalBow3G3228' => 'sbo', 'SalBow6G1634' => 'sbo', 'SalBow6G3603' => 'sbo', 'SalBow6G5266' => 'sbo', 'SalBow7G2265' => 'sbo', 'SalBow8G0850' => 'sbo', 'SalBow8G2592' => 'sbo', 'Sc05g0009240' => 'sci', 'Sc12g0002300' => 'sci', 'Sc21g0000100' => 'sci', 'Sc21g0004720' => 'sci', 'Sed0002949' => 'sed', 'Sed0004114' => 'sed', 'Sed0004306' => 'sed', 'Sed0006172' => 'sed', 'Sed0008413' => 'sed', 'Sed0013809' => 'sed', 'Sed0019556' => 'sed', 'SEGI_03570' => 'sgi', 'SEGI_07859' => 'sgi', 'SEGI_15042' => 'sgi', 'SEGI_16263' => 'sgi', 'SEGI_16552' => 'sgi', 'SEGI_24331' => 'sgi', 'SEGI_27316' => 'sgi', 'SEGI_29521' => 'sgi', 'SEGI_41342' => 'sgi', 'SGA_v2.0_scaffold27G11617' => 'sas', 'SGA_v2.0_scaffold316G48428' => 'sas', 'SGA_v2.0_scaffold49G18261' => 'sas', 'SGA_v2.0_scaffold7G03831' => 'sas', 'SGA_v2.0_scaffold93G28359' => 'sas', 'SHI02210' => 'shi', 'SHI06028' => 'shi', 'SHI06321' => 'shi', 'SMO111G0012' => 'smo', 'SMO228G0080' => 'smo', 'SMO356G0756' => 'smo', 'Solyc02g080620.3' => 'sly', 'Solyc06g074530.1' => 'sly', 'Solyc11g066890.1' => 'sly', 'Solyc11g072520.3' => 'sly', 'Sopen02g025330' => 'spe', 'Sopen06g031000' => 'spe', 'Sopen09g008240' => 'spe', 'Sopen09g025210' => 'spe', 'Sopen11g026600' => 'spe', 'Sopen11g030170' => 'spe', 'Sp1g10420' => 'spa', 'Sp3g06570' => 'spa', 'Sp4g10660' => 'spa', 'Sp5g16460' => 'spa', 'Sp6g22710' => 'spa', 'TAR365G0112' => 'tar', 'TAR369G0717' => 'tar', 'TAR374G0976' => 'tar', 'TAR623G1128' => 'tar', 'TAR626G1937' => 'tar', 'TAR627G0123' => 'tar', 'TAR628G0305' => 'tar', 'TAR636G1176' => 'tar', 'TAR636G2442' => 'tar', 'THA.LOC104800556' => 'tha', 'THA.LOC104809501' => 'tha', 'THA.LOC104815126' => 'tha', 'THA.LOC104815732' => 'tha', 'THA.LOC104823528' => 'tha', 'Thecc.02G365600' => 'tca', 'Thecc.06G222300' => 'tca', 'Thecc.09G261800' => 'tca', 'Thecc.09G291400' => 'tca', 'Thhalv10003028m.g' => 'esa', 'Thhalv10007886m.g' => 'esa', 'Thhalv10016085m.g' => 'esa', 'Thhalv10016681m.g' => 'esa', 'Thhalv10020951m.g' => 'esa', 'TPR.G15598' => 'tpr', 'TPR.G29305' => 'tpr', 'TPR.G32395' => 'tpr', 'TPR.G36998' => 'tpr', 'TPR.G4227' => 'tpr', 'TWI18G1433' => 'twi', 'TWI31G0755' => 'twi', 'TWI38G0912' => 'twi', 'TWI75G1097' => 'twi', 'TWI75G1619' => 'twi', 'TWI79G1336' => 'twi', 'unitig_0.g943' => 'ugi', 'unitig_0.g944' => 'ugi', 'unitig_22.g6646' => 'ugi', 'unitig_37.g12681' => 'ugi', 'unitig_8.g3290' => 'ugi', 'vmacro03278' => 'vma', 'vmacro12197' => 'vma', 'vmacro14478' => 'vma', 'vmacro15787' => 'vma', 'vmacro15789' => 'vma', 'vmacro15790' => 'vma', 'vmacro15806' => 'vma', 'vmacro22907' => 'vma', 'vmacro22908' => 'vma', 'vmacro22909' => 'vma', 'vmacro23108' => 'vma', 'VMungo0540G0540' => 'vmu', 'VMungo0540G2468' => 'vmu', 'VMungo1080G0390' => 'vmu', 'VMungo1080G1165' => 'vmu', 'VMungo1127G0170' => 'vmu', 'VMungo1127G2099' => 'vmu', 'VMungo1215G3013' => 'vmu', 'Zm00001eb013110' => 'zma', 'Zm00001eb084260' => 'zma', 'Zm00001eb096110' => 'zma', 'Zm00001eb217510' => 'zma', 'Zm00001eb322550' => 'zma', 'Zm00001eb390770' => 'zma', 'Zm00001eb397170' => 'zma', 'Zm00001eb404610' => 'zma', 'Zm00001eb421790' => 'zma' ), 'gf_id' => 'HOM05D000911', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000911' ), 'data_identifier' => 'HOM05D000911', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000911', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27780' => 'bna', 'A03p35380' => 'bna', 'A04p21160' => 'bna', 'A05p40570' => 'bna', 'A06p26900' => 'bna', 'A08p33230' => 'bna', 'A09p65960' => 'bna', 'A10p18290' => 'bna', 'Aa31LG1G12990' => 'aar', 'Aa31LG1G2980' => 'aar', 'Aa31LG4G14320' => 'aar', 'Aa31LG7G11800' => 'aar', 'Aa31sc36G50' => 'aar', 'Aa31sc36G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3721' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5459' => 'aag', 'Actinidia03028' => 'ach', 'Actinidia03753' => 'ach', 'Actinidia04187' => 'ach', 'Actinidia05509' => 'ach', 'Actinidia24180' => 'ach', 'Actinidia26906' => 'ach', 'Actinidia37097' => 'ach', 'Actinidia38249' => 'ach', 'Ah.01g003470' => 'amhyb', 'Ah.01g004580' => 'amhyb', 'Ah.01g014850' => 'amhyb', 'Ah.01g016830' => 'amhyb', 'Ah.14g088000' => 'amhyb', 'AL1G22980' => 'aly', 'AL3G18990' => 'aly', 'AL4G22440' => 'aly', 'AL4G33180' => 'aly', 'AL5G22920' => 'aly', 'AL6G33660' => 'aly', 'AL8G20720' => 'aly', 'Aqoxy1G00935' => 'aox', 'Aqoxy1G02094' => 'aox', 'Aqoxy2G01239' => 'aox', 'Aqoxy4G01870' => 'aox', 'Aqoxy7G00450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.36ZVTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71EM27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5D6C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH3WRE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3NCM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RIM768' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YB5YRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z36GDV' => 'arhy', 'AT1G08250' => 'ath', 'AT1G11790' => 'ath', 'AT2G27820' => 'ath', 'AT3G07630' => 'ath', 'AT3G44720' => 'ath', 'AT5G22630' => 'ath', 'ATR0693G304' => 'atr', 'ATR0794G109' => 'atr', 'ATR0820G120' => 'atr', 'ATR1159G064' => 'atr', 'Atru.chr10.2239' => 'acertr', 'Atru.chr3.3371' => 'acertr', 'Atru.chr6.3202' => 'acertr', 'AUR62006499' => 'cqu', 'AUR62012718' => 'cqu', 'AUR62021938' => 'cqu', 'AUR62023932' => 'cqu', 'AUR62025034' => 'cqu', 'AUR62025035' => 'cqu', 'AUR62038307' => 'cqu', 'AUR62043466' => 'cqu', 'BcaB02g10748' => 'bca', 'BcaB03g13231' => 'bca', 'BcaB03g14689' => 'bca', 'BcaB05g22716' => 'bca', 'BcaB06g28172' => 'bca', 'BcaB08g36413' => 'bca', 'BcaC01g02186' => 'bca', 'BcaC01g04272' => 'bca', 'BcaC02g08080' => 'bca', 'BcaC02g08227' => 'bca', 'BcaC03g13901' => 'bca', 'BcaC04g19593' => 'bca', 'BcaC04g20874' => 'bca', 'BcaC05g29557' => 'bca', 'BcaC06g35505' => 'bca', 'BcaC07g41954' => 'bca', 'BcaC07g41955' => 'bca', 'BcaC07g41956' => 'bca', 'BcaC07g42519' => 'bca', 'BcaC07g42520' => 'bca', 'BcaC07g42523' => 'bca', 'BcaC07g42524' => 'bca', 'BcaC07g42525' => 'bca', 'BcaC08g47480' => 'bca', 'BcaC08g47481' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00530' => 'bna', 'BolC2t07178H' => 'bol', 'BolC3t16567H' => 'bol', 'BolC4t27234H' => 'bol', 'BolC5t29728H' => 'bol', 'BolC5t34622H' => 'bol', 'BolC6t40321H' => 'bol', 'BolC7t42028H' => 'bol', 'BolC8t49125H' => 'bol', 'BolC8t52538H' => 'bol', 'BolC8t52539H' => 'bol', 'BolC9t56681H' => 'bol', 'BolC9t58266H' => 'bol', 'BolSC21t60294H' => 'bol', 'BraA02t05670Z' => 'bra', 'BraA03t12716Z' => 'bra', 'BraA04t17685Z' => 'bra', 'BraA05t22788Z' => 'bra', 'BraA06t24032Z' => 'bra', 'BraA06t25625Z' => 'bra', 'BraA07t27930Z' => 'bra', 'BraA08t35242Z' => 'bra', 'BraA09t38609Z' => 'bra', 'BraA10t43905Z' => 'bra', 'C02p11060' => 'bna', 'C03p42990' => 'bna', 'C03p67310' => 'bna', 'C04p56990' => 'bna', 'C04p58660' => 'bna', 'C05p09890' => 'bna', 'C05p59680' => 'bna', 'C06p19830' => 'bna', 'C06p53040' => 'bna', 'C07p15230' => 'bna', 'C08p50070' => 'bna', 'C08p50090' => 'bna', 'C09p38330' => 'bna', 'C09p53940' => 'bna', 'CAN.G1014.1' => 'can', 'CAN.G644.30' => 'can', 'CAN.G84.47' => 'can', 'CAN.G919.8' => 'can', 'CANSAT54G0113' => 'cansat', 'CANSAT54G1286' => 'cansat', 'CANSAT64G1020' => 'cansat', 'CARHR008080' => 'chi', 'CARHR008090' => 'chi', 'CARHR012130' => 'chi', 'CARHR038390' => 'chi', 'CARHR082330' => 'chi', 'CARHR120520' => 'chi', 'CARHR151470' => 'chi', 'CARHR190950' => 'chi', 'Carub.0001s0760' => 'cru', 'Carub.0001s1146' => 'cru', 'Carub.0003s0721' => 'cru', 'Carub.0004s0858' => 'cru', 'Carub.0005s1040' => 'cru', 'Carub.0006s2035' => 'cru', 'Carub.0015s0005' => 'cru', 'Ca_01607_v3' => 'car', 'Ca_01677_v3' => 'car', 'Ca_06087_v3' => 'car', 'Ca_19238_v3' => 'car', 'Ca_19373_v3' => 'car', 'Ca_21079_v3' => 'car', 'CBR_g54016' => 'cbr', 'CBR_g54018' => 'cbr', 'CBR_g54020' => 'cbr', 'Cc01_g09780' => 'ccan', 'Cc01_g11680' => 'ccan', 'Cc02_g15610' => 'ccan', 'Cc05_g04350' => 'ccan', 'Cc09_g01580' => 'ccan', 'CDE01G0795' => 'cde', 'CDE02G2024' => 'cde', 'CDE02G2260' => 'cde', 'CDE02G4561' => 'cde', 'CDE05G2733' => 'cde', 'CDE05G3422' => 'cde', 'CDE06G2003' => 'cde', 'CDE08G0576' => 'cde', 'CDE09G0048' => 'cde', 'CDE11G0805' => 'cde', 'Cfa003644' => 'cfa', 'Cfa006290' => 'cfa', 'Cfa010080' => 'cfa', 'Cfa011376' => 'cfa', 'Cfa011576' => 'cfa', 'Cfa011577' => 'cfa', 'Cfa014389' => 'cfa', 'Ciclev10006044m.g' => 'ccl', 'Ciclev10006954m.g' => 'ccl', 'Ciclev10015131m.g' => 'ccl', 'Ciclev10015580m.g' => 'ccl', 'Ciclev10028359m.g' => 'ccl', 'Ciclev10028573m.g' => 'ccl', 'CiPaw.03G159300' => 'cil', 'CiPaw.04G115100' => 'cil', 'CiPaw.09G092800' => 'cil', 'CiPaw.10G071800' => 'cil', 'CiPaw.13G105800' => 'cil', 'CiPaw.13G141000' => 'cil', 'CiPaw.14G103400' => 'cil', 'ClCG01G012700' => 'cla', 'ClCG01G012720' => 'cla', 'ClCG01G021920' => 'cla', 'ClCG02G008870' => 'cla', 'ClCG02G020840' => 'cla', 'ClCG02G021930' => 'cla', 'COL.COLO4_19302' => 'col', 'COL.COLO4_25262' => 'col', 'COL.COLO4_31788' => 'col', 'Cpa.g.c34684' => 'cpa', 'Cpa.g.c36520.1' => 'cpa', 'Cpa.g.c45626' => 'cpa', 'Cpa.g.sc121.17' => 'cpa', 'Cpa.g.sc13.22' => 'cpa', 'Cpa.g.sc87.88' => 'cpa', 'Cre06.g261800' => 'cre', 'CsaV3_1G014500' => 'csa', 'CsaV3_1G014510' => 'csa', 'CsaV3_2G034880' => 'csa', 'CsaV3_6G014760' => 'csa', 'CsaV3_6G021500' => 'csa', 'CsaV3_6G048980' => 'csa', 'CSS0002511' => 'camsi', 'CSS0007556' => 'camsi', 'CSS0008532' => 'camsi', 'CSS0009709' => 'camsi', 'CSS0010486' => 'camsi', 'CSS0016768' => 'camsi', 'CSS0023512' => 'camsi', 'CSS0025341' => 'camsi', 'CSS0027999' => 'camsi', 'CSS0028944' => 'camsi', 'CSS0032292' => 'camsi', 'CSS0032464' => 'camsi', 'CSS0037153' => 'camsi', 'CSS0039256' => 'camsi', 'CSS0048392' => 'camsi', 'CSS0050458' => 'camsi', 'DCAR_004224' => 'dca', 'DCAR_006147' => 'dca', 'DCAR_006465' => 'dca', 'DCAR_008159' => 'dca', 'DCAR_012164' => 'dca', 'DCAR_019764' => 'dca', 'Dinv05418' => 'din', 'Dinv10839' => 'din', 'Dinv12521' => 'din', 'Dinv13900' => 'din', 'Dinv29426' => 'din', 'Duzib150G0263' => 'dzi', 'Duzib168G1178' => 'dzi', 'Duzib168G1924' => 'dzi', 'Duzib170G0299' => 'dzi', 'Duzib170G0813' => 'dzi', 'Duzib235G1128' => 'dzi', 'Duzib248G1060' => 'dzi', 'ECA232G1910' => 'eca', 'ECA233G4621' => 'eca', 'ECA238G1216' => 'eca', 'ECA238G1784' => 'eca', 'ECA248G1242' => 'eca', 'EL10Ac8g20071' => 'bvu', 'EL10Ac9g21086' => 'bvu', 'EL10Ac9g22407' => 'bvu', 'EL10Ac9g22412' => 'bvu', 'Eucgr.A01119' => 'egr', 'Eucgr.E04043' => 'egr', 'Eucgr.J00428' => 'egr', 'Eucgr.J00958' => 'egr', 'FAN11G3091' => 'fan', 'FAN11G3651' => 'fan', 'FAN16G2566' => 'fan', 'FAN21G3155' => 'fan', 'FAN21G3400' => 'fan', 'FAN21G3543' => 'fan', 'FAN25G0234' => 'fan', 'FAN25G1422' => 'fan', 'FAN25G3392' => 'fan', 'FvH4_3g01940' => 'fve', 'FvH4_3g29870' => 'fve', 'FvH4_3g33680' => 'fve', 'Glyma.09G004200' => 'gma', 'Glyma.11G151288' => 'gma', 'Glyma.11G189100' => 'gma', 'Glyma.12G072500' => 'gma', 'Glyma.12G085500' => 'gma', 'Glyma.12G181800' => 'gma', 'Glyma.12G193000' => 'gma', 'Glyma.13G309300' => 'gma', 'Glyma.13G319000' => 'gma', 'Glyma.17G012600' => 'gma', 'Gohir.A06G148600' => 'ghi', 'Gohir.A07G115800' => 'ghi', 'Gohir.A08G003600' => 'ghi', 'Gohir.A09G093300' => 'ghi', 'Gohir.A09G105400' => 'ghi', 'Gohir.A09G105500' => 'ghi', 'Gohir.D06G154600' => 'ghi', 'Gohir.D07G120200' => 'ghi', 'Gohir.D08G013900' => 'ghi', 'Gohir.D09G093100' => 'ghi', 'Gohir.D09G102200' => 'ghi', 'Gohir.D09G102300' => 'ghi', 'Gorai.001G129400' => 'gra', 'Gorai.004G008200' => 'gra', 'Gorai.006G109800' => 'gra', 'Gorai.006G119500' => 'gra', 'Gorai.006G121300' => 'gra', 'Gorai.010G180700' => 'gra', 'GSVIVG01012716001' => 'vvi', 'GSVIVG01025118001' => 'vvi', 'GSVIVG01030439001' => 'vvi', 'GSVIVG01031397001' => 'vvi', 'HanXRQChr01g0004201' => 'han', 'HanXRQChr02g0054941' => 'han', 'HanXRQChr05g0141811' => 'han', 'HanXRQChr07g0197751' => 'han', 'HanXRQChr11g0346691' => 'han', 'HanXRQChr13g0396971' => 'han', 'HanXRQChr14g0432951' => 'han', 'HanXRQChr14g0452001' => 'han', 'HanXRQChr15g0496681' => 'han', 'HanXRQChr17g0557491' => 'han', 'HanXRQChr17g0557501' => 'han', 'Haze_06809' => 'cav', 'Haze_12852' => 'cav', 'Haze_15850' => 'cav', 'Haze_23446' => 'cav', 'Haze_23942' => 'cav', 'Haze_23943' => 'cav', 'Hma1.2p1_0091F.1_g046450' => 'hma', 'Hma1.2p1_0128F.1_g059910' => 'hma', 'Hma1.2p1_0249F.1_g102260' => 'hma', 'Hma1.2p1_0453F.1_g156190' => 'hma', 'Hma1.2p1_0695F.1_g204380' => 'hma', 'Hma1.2p1_0749F.1_g212650' => 'hma', 'Hma1.2p1_2156F.1_g315420' => 'hma', 'Hma1.2p1_2686F.1_g326940' => 'hma', 'HPP92_006428' => 'vpl', 'HPP92_012069' => 'vpl', 'HPP92_014129' => 'vpl', 'HPP92_014133' => 'vpl', 'HPP92_017315' => 'vpl', 'HPP92_026445' => 'vpl', 'HPP92_026446' => 'vpl', 'Hund00774' => 'sun', 'Hund07682' => 'sun', 'Hund21413' => 'sun', 'Hund23462' => 'sun', 'Hund23463' => 'sun', 'Lalb_Chr03g0027911' => 'lal', 'Lalb_Chr13g0304271' => 'lal', 'Lalb_Chr19g0137471' => 'lal', 'Lalb_Chr22g0350651' => 'lal', 'Lalb_Chr24g0395151' => 'lal', 'Lj1A1231T40' => 'lonja', 'Lj1A221T48' => 'lonja', 'Lj1C924T12' => 'lonja', 'Lj2C993G6' => 'lonja', 'Lj3g0005790' => 'lja', 'Lj3g0015432' => 'lja', 'Lj3g0017722' => 'lja', 'Lj3g0018497' => 'lja', 'Lj4g0025071' => 'lja', 'Lsat_1_v5_gn_1_129680' => 'lsa', 'Lsat_1_v5_gn_2_25321' => 'lsa', 'Lsat_1_v5_gn_2_95461' => 'lsa', 'Lsat_1_v5_gn_4_159620' => 'lsa', 'Lsat_1_v5_gn_6_41301' => 'lsa', 'Lsat_1_v5_gn_6_74660' => 'lsa', 'Lsat_1_v5_gn_7_11520' => 'lsa', 'Lsat_1_v5_gn_9_67680' => 'lsa', 'Manes.04G008300' => 'mes', 'Manes.04G008400' => 'mes', 'Manes.04G026500' => 'mes', 'Manes.10G135300' => 'mes', 'Manes.11G157300' => 'mes', 'Manes.12G074000' => 'mes', 'Manes.16G006200' => 'mes', 'Manes.17G026400' => 'mes', 'Mapoly0024s0086' => 'mpo', 'Mapoly0024s0087' => 'mpo', 'Mapoly0071s0057' => 'mpo', 'Mapoly0204s0012' => 'mpo', 'MBI04_g37681_MAGBIO' => 'mbi', 'MBI05_g17779_MAGBIO' => 'mbi', 'MBI12_g31184_MAGBIO' => 'mbi', 'MBI17_g11083_MAGBIO' => 'mbi', 'MBI18_g03883_MAGBIO' => 'mbi', 'MBI18_g28940_MAGBIO' => 'mbi', 'MCO01G690' => 'mco', 'MD03G1109900' => 'mdo', 'MD03G1134800' => 'mdo', 'MD05G1348000' => 'mdo', 'MD10G1322400' => 'mdo', 'MD11G1123300' => 'mdo', 'MD11G1157600' => 'mdo', 'Medtr2g084875' => 'mtr', 'Medtr2g088130' => 'mtr', 'Medtr4g055310' => 'mtr', 'Medtr4g061070' => 'mtr', 'Medtr4g132250' => 'mtr', 'MELO3C004795.2' => 'cme', 'MELO3C004797.2' => 'cme', 'MELO3C007396.2' => 'cme', 'MELO3C019277.2' => 'cme', 'MELO3C021449.2' => 'cme', 'MELO3C025736.2' => 'cme', 'Migut.D02175' => 'egut', 'Migut.H01573' => 'egut', 'Migut.M01327' => 'egut', 'Migut.N02513' => 'egut', 'MSTRG.14638' => 'ama', 'MSTRG.18632' => 'ama', 'MSTRG.7203' => 'ama', 'Nitab4.5_0000533g0140' => 'nta', 'Nitab4.5_0000888g0150' => 'nta', 'Nitab4.5_0001453g0040' => 'nta', 'Nitab4.5_0002827g0090' => 'nta', 'Nitab4.5_0003082g0040' => 'nta', 'Nitab4.5_0007799g0040' => 'nta', 'Nitab4.5_0008983g0010' => 'nta', 'Nitab4.5_0009017g0020' => 'nta', 'Nn1g02132' => 'nnu', 'Nn1g03492' => 'nnu', 'Nn1g03493' => 'nnu', 'Nn1g03494' => 'nnu', 'Nn1g07164' => 'nnu', 'Nn1g07291' => 'nnu', 'Nn2g10655' => 'nnu', 'Nn2g11652' => 'nnu', 'Nn2g14008' => 'nnu', 'Nn3g17476' => 'nnu', 'Nn3g17477' => 'nnu', 'Nn4g22370' => 'nnu', 'Nn4g25255' => 'nnu', 'Nn5g27755' => 'nnu', 'Nn6g34260' => 'nnu', 'Nn6g35041' => 'nnu', 'Oeu005924.1' => 'oeu', 'Oeu008383.1' => 'oeu', 'Oeu014928.1' => 'oeu', 'Oeu019889.1' => 'oeu', 'Oeu022271.1' => 'oeu', 'Oeu025271.1' => 'oeu', 'Oeu036302.1' => 'oeu', 'Oeu044100.1' => 'oeu', 'Os01g0528300' => 'osa', 'Os03g0286200' => 'osa', 'Os04g0406600' => 'osa', 'Os07g0512000' => 'osa', 'Os07g0694600' => 'osa', 'Os08g0411000' => 'osa', 'Os09g0565700' => 'osa', 'Os09g0566050' => 'osa', 'Os10g0523700' => 'osa', 'Peaxi162Scf00002g00514' => 'pax', 'Peaxi162Scf00047g01817' => 'pax', 'Peaxi162Scf00114g00001' => 'pax', 'Peaxi162Scf00147g00613' => 'pax', 'Peaxi162Scf00389g00425' => 'pax', 'PGR042G1139' => 'pgr', 'PGR042G3273' => 'pgr', 'PGR102G2180' => 'pgr', 'PGR119G0234' => 'pgr', 'PGR119G0668' => 'pgr', 'PGSC0003DMG400007122' => 'stu', 'PGSC0003DMG400016478' => 'stu', 'PGSC0003DMG400025374' => 'stu', 'PGSC0003DMG400026536' => 'stu', 'Phvul.003G079600' => 'pvu', 'Phvul.005G115600' => 'pvu', 'Phvul.005G127100' => 'pvu', 'Phvul.006G149500' => 'pvu', 'Phvul.006G149600' => 'pvu', 'Phvul.011G071800' => 'pvu', 'Phvul.011G090400' => 'pvu', 'Potri.004G013400' => 'ptr', 'Potri.004G188100' => 'ptr', 'Potri.008G195500' => 'ptr', 'Potri.009G148800' => 'ptr', 'Potri.011G004700' => 'ptr', 'Pp3c17_22810' => 'ppa', 'Pp3c18_4480' => 'ppa', 'Pp3c19_13030' => 'ppa', 'Pp3c1_33620' => 'ppa', 'Pp3c2_9380' => 'ppa', 'PRCOL_00001023' => 'pco', 'Prupe.3G216300' => 'ppe', 'Prupe.4G019500' => 'ppe', 'Prupe.6G092500' => 'ppe', 'Prupe.6G119200' => 'ppe', 'Psat0s1945g0080' => 'psa', 'Psat0s4167g0040' => 'psa', 'Psat1g185800' => 'psa', 'Psat4g006440' => 'psa', 'Psat4g006480' => 'psa', 'Psat4g168120' => 'psa', 'Psat5g255680' => 'psa', 'Psat5g261760' => 'psa', 'Psat7g222120' => 'psa', 'PSO063G7252' => 'pso', 'PSO170G4778' => 'pso', 'PSO210G2249' => 'pso', 'PSO339G2411' => 'pso', 'PSO339G2457' => 'pso', 'PSO339G2854' => 'pso', 'PSO339G4288' => 'pso', 'PSO339G4615' => 'pso', 'PSO384G2796' => 'pso', 'PSO384G2940' => 'pso', 'PSO384G4227' => 'pso', 'PSO478G1425' => 'pso', 'PSO541G3863' => 'pso', 'PSO675G0507' => 'pso', 'PSO782G0338' => 'pso', 'PSO832G0644' => 'pso', 'QL01p013664' => 'qlo', 'QL01p036598' => 'qlo', 'QL05p072984' => 'qlo', 'QL08p005768' => 'qlo', 'QL08p032743' => 'qlo', 'QL93p0073_0439' => 'qlo', 'QL93p0073_0444' => 'qlo', 'RcHm_v2.0_Chr5g0002851' => 'rch', 'RcHm_v2.0_Chr5g0055201' => 'rch', 'RcHm_v2.0_Chr5g0061191' => 'rch', 'RcHm_v2.0_Chr7g0203231' => 'rch', 'Rhsim01G0208100' => 'rsi', 'Rhsim01G0208200' => 'rsi', 'Rhsim02G0106500' => 'rsi', 'Rhsim03G0107900' => 'rsi', 'Rhsim06G0163400' => 'rsi', 'Rhsim13G0105200' => 'rsi', 'Sabra04G0006300' => 'sbr', 'Sabra04G0127000' => 'sbr', 'Sabra08G0148700' => 'sbr', 'Sabra09G0117400' => 'sbr', 'SalBow1G3326' => 'sbo', 'SalBow3G3228' => 'sbo', 'SalBow6G1634' => 'sbo', 'SalBow6G3603' => 'sbo', 'SalBow6G5266' => 'sbo', 'SalBow7G2265' => 'sbo', 'SalBow8G0850' => 'sbo', 'SalBow8G2592' => 'sbo', 'Sc05g0009240' => 'sci', 'Sc12g0002300' => 'sci', 'Sc21g0000100' => 'sci', 'Sc21g0004720' => 'sci', 'Sed0002949' => 'sed', 'Sed0004114' => 'sed', 'Sed0004306' => 'sed', 'Sed0006172' => 'sed', 'Sed0008413' => 'sed', 'Sed0013809' => 'sed', 'Sed0019556' => 'sed', 'SEGI_03570' => 'sgi', 'SEGI_07859' => 'sgi', 'SEGI_15042' => 'sgi', 'SEGI_16263' => 'sgi', 'SEGI_16552' => 'sgi', 'SEGI_24331' => 'sgi', 'SEGI_27316' => 'sgi', 'SEGI_29521' => 'sgi', 'SEGI_41342' => 'sgi', 'SGA_v2.0_scaffold27G11617' => 'sas', 'SGA_v2.0_scaffold316G48428' => 'sas', 'SGA_v2.0_scaffold49G18261' => 'sas', 'SGA_v2.0_scaffold7G03831' => 'sas', 'SGA_v2.0_scaffold93G28359' => 'sas', 'SHI02210' => 'shi', 'SHI06028' => 'shi', 'SHI06321' => 'shi', 'SMO111G0012' => 'smo', 'SMO228G0080' => 'smo', 'SMO356G0756' => 'smo', 'Solyc02g080620.3' => 'sly', 'Solyc06g074530.1' => 'sly', 'Solyc11g066890.1' => 'sly', 'Solyc11g072520.3' => 'sly', 'Sopen02g025330' => 'spe', 'Sopen06g031000' => 'spe', 'Sopen09g008240' => 'spe', 'Sopen09g025210' => 'spe', 'Sopen11g026600' => 'spe', 'Sopen11g030170' => 'spe', 'Sp1g10420' => 'spa', 'Sp3g06570' => 'spa', 'Sp4g10660' => 'spa', 'Sp5g16460' => 'spa', 'Sp6g22710' => 'spa', 'TAR365G0112' => 'tar', 'TAR369G0717' => 'tar', 'TAR374G0976' => 'tar', 'TAR623G1128' => 'tar', 'TAR626G1937' => 'tar', 'TAR627G0123' => 'tar', 'TAR628G0305' => 'tar', 'TAR636G1176' => 'tar', 'TAR636G2442' => 'tar', 'THA.LOC104800556' => 'tha', 'THA.LOC104809501' => 'tha', 'THA.LOC104815126' => 'tha', 'THA.LOC104815732' => 'tha', 'THA.LOC104823528' => 'tha', 'Thecc.02G365600' => 'tca', 'Thecc.06G222300' => 'tca', 'Thecc.09G261800' => 'tca', 'Thecc.09G291400' => 'tca', 'Thhalv10003028m.g' => 'esa', 'Thhalv10007886m.g' => 'esa', 'Thhalv10016085m.g' => 'esa', 'Thhalv10016681m.g' => 'esa', 'Thhalv10020951m.g' => 'esa', 'TPR.G15598' => 'tpr', 'TPR.G29305' => 'tpr', 'TPR.G32395' => 'tpr', 'TPR.G36998' => 'tpr', 'TPR.G4227' => 'tpr', 'TWI18G1433' => 'twi', 'TWI31G0755' => 'twi', 'TWI38G0912' => 'twi', 'TWI75G1097' => 'twi', 'TWI75G1619' => 'twi', 'TWI79G1336' => 'twi', 'unitig_0.g943' => 'ugi', 'unitig_0.g944' => 'ugi', 'unitig_22.g6646' => 'ugi', 'unitig_37.g12681' => 'ugi', 'unitig_8.g3290' => 'ugi', 'vmacro03278' => 'vma', 'vmacro12197' => 'vma', 'vmacro14478' => 'vma', 'vmacro15787' => 'vma', 'vmacro15789' => 'vma', 'vmacro15790' => 'vma', 'vmacro15806' => 'vma', 'vmacro22907' => 'vma', 'vmacro22908' => 'vma', 'vmacro22909' => 'vma', 'vmacro23108' => 'vma', 'VMungo0540G0540' => 'vmu', 'VMungo0540G2468' => 'vmu', 'VMungo1080G0390' => 'vmu', 'VMungo1080G1165' => 'vmu', 'VMungo1127G0170' => 'vmu', 'VMungo1127G2099' => 'vmu', 'VMungo1215G3013' => 'vmu', 'Zm00001eb013110' => 'zma', 'Zm00001eb084260' => 'zma', 'Zm00001eb096110' => 'zma', 'Zm00001eb217510' => 'zma', 'Zm00001eb322550' => 'zma', 'Zm00001eb390770' => 'zma', 'Zm00001eb397170' => 'zma', 'Zm00001eb404610' => 'zma', 'Zm00001eb421790' => 'zma' ) $gf_id = 'HOM05D000911' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000911' ) $data_identifier = 'HOM05D000911' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 16, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 5, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 6, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 8, 'nnu' => (int) 16, 'oeu' => (int) 8, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 5, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 16, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421790' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000911', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27780' => 'bna', 'A03p35380' => 'bna', 'A04p21160' => 'bna', 'A05p40570' => 'bna', 'A06p26900' => 'bna', 'A08p33230' => 'bna', 'A09p65960' => 'bna', 'A10p18290' => 'bna', 'Aa31LG1G12990' => 'aar', 'Aa31LG1G2980' => 'aar', 'Aa31LG4G14320' => 'aar', 'Aa31LG7G11800' => 'aar', 'Aa31sc36G50' => 'aar', 'Aa31sc36G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3721' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5459' => 'aag', 'Actinidia03028' => 'ach', 'Actinidia03753' => 'ach', 'Actinidia04187' => 'ach', 'Actinidia05509' => 'ach', 'Actinidia24180' => 'ach', 'Actinidia26906' => 'ach', 'Actinidia37097' => 'ach', 'Actinidia38249' => 'ach', 'Ah.01g003470' => 'amhyb', 'Ah.01g004580' => 'amhyb', 'Ah.01g014850' => 'amhyb', 'Ah.01g016830' => 'amhyb', 'Ah.14g088000' => 'amhyb', 'AL1G22980' => 'aly', 'AL3G18990' => 'aly', 'AL4G22440' => 'aly', 'AL4G33180' => 'aly', 'AL5G22920' => 'aly', 'AL6G33660' => 'aly', 'AL8G20720' => 'aly', 'Aqoxy1G00935' => 'aox', 'Aqoxy1G02094' => 'aox', 'Aqoxy2G01239' => 'aox', 'Aqoxy4G01870' => 'aox', 'Aqoxy7G00450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.36ZVTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71EM27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5D6C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH3WRE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3NCM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RIM768' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YB5YRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z36GDV' => 'arhy', 'AT1G08250' => 'ath', 'AT1G11790' => 'ath', 'AT2G27820' => 'ath', 'AT3G07630' => 'ath', 'AT3G44720' => 'ath', 'AT5G22630' => 'ath', 'ATR0693G304' => 'atr', 'ATR0794G109' => 'atr', 'ATR0820G120' => 'atr', 'ATR1159G064' => 'atr', 'Atru.chr10.2239' => 'acertr', 'Atru.chr3.3371' => 'acertr', 'Atru.chr6.3202' => 'acertr', 'AUR62006499' => 'cqu', 'AUR62012718' => 'cqu', 'AUR62021938' => 'cqu', 'AUR62023932' => 'cqu', 'AUR62025034' => 'cqu', 'AUR62025035' => 'cqu', 'AUR62038307' => 'cqu', 'AUR62043466' => 'cqu', 'BcaB02g10748' => 'bca', 'BcaB03g13231' => 'bca', 'BcaB03g14689' => 'bca', 'BcaB05g22716' => 'bca', 'BcaB06g28172' => 'bca', 'BcaB08g36413' => 'bca', 'BcaC01g02186' => 'bca', 'BcaC01g04272' => 'bca', 'BcaC02g08080' => 'bca', 'BcaC02g08227' => 'bca', 'BcaC03g13901' => 'bca', 'BcaC04g19593' => 'bca', 'BcaC04g20874' => 'bca', 'BcaC05g29557' => 'bca', 'BcaC06g35505' => 'bca', 'BcaC07g41954' => 'bca', 'BcaC07g41955' => 'bca', 'BcaC07g41956' => 'bca', 'BcaC07g42519' => 'bca', 'BcaC07g42520' => 'bca', 'BcaC07g42523' => 'bca', 'BcaC07g42524' => 'bca', 'BcaC07g42525' => 'bca', 'BcaC08g47480' => 'bca', 'BcaC08g47481' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00530' => 'bna', 'BolC2t07178H' => 'bol', 'BolC3t16567H' => 'bol', 'BolC4t27234H' => 'bol', 'BolC5t29728H' => 'bol', 'BolC5t34622H' => 'bol', 'BolC6t40321H' => 'bol', 'BolC7t42028H' => 'bol', 'BolC8t49125H' => 'bol', 'BolC8t52538H' => 'bol', 'BolC8t52539H' => 'bol', 'BolC9t56681H' => 'bol', 'BolC9t58266H' => 'bol', 'BolSC21t60294H' => 'bol', 'BraA02t05670Z' => 'bra', 'BraA03t12716Z' => 'bra', 'BraA04t17685Z' => 'bra', 'BraA05t22788Z' => 'bra', 'BraA06t24032Z' => 'bra', 'BraA06t25625Z' => 'bra', 'BraA07t27930Z' => 'bra', 'BraA08t35242Z' => 'bra', 'BraA09t38609Z' => 'bra', 'BraA10t43905Z' => 'bra', 'C02p11060' => 'bna', 'C03p42990' => 'bna', 'C03p67310' => 'bna', 'C04p56990' => 'bna', 'C04p58660' => 'bna', 'C05p09890' => 'bna', 'C05p59680' => 'bna', 'C06p19830' => 'bna', 'C06p53040' => 'bna', 'C07p15230' => 'bna', 'C08p50070' => 'bna', 'C08p50090' => 'bna', 'C09p38330' => 'bna', 'C09p53940' => 'bna', 'CAN.G1014.1' => 'can', 'CAN.G644.30' => 'can', 'CAN.G84.47' => 'can', 'CAN.G919.8' => 'can', 'CANSAT54G0113' => 'cansat', 'CANSAT54G1286' => 'cansat', 'CANSAT64G1020' => 'cansat', 'CARHR008080' => 'chi', 'CARHR008090' => 'chi', 'CARHR012130' => 'chi', 'CARHR038390' => 'chi', 'CARHR082330' => 'chi', 'CARHR120520' => 'chi', 'CARHR151470' => 'chi', 'CARHR190950' => 'chi', 'Carub.0001s0760' => 'cru', 'Carub.0001s1146' => 'cru', 'Carub.0003s0721' => 'cru', 'Carub.0004s0858' => 'cru', 'Carub.0005s1040' => 'cru', 'Carub.0006s2035' => 'cru', 'Carub.0015s0005' => 'cru', 'Ca_01607_v3' => 'car', 'Ca_01677_v3' => 'car', 'Ca_06087_v3' => 'car', 'Ca_19238_v3' => 'car', 'Ca_19373_v3' => 'car', 'Ca_21079_v3' => 'car', 'CBR_g54016' => 'cbr', 'CBR_g54018' => 'cbr', 'CBR_g54020' => 'cbr', 'Cc01_g09780' => 'ccan', 'Cc01_g11680' => 'ccan', 'Cc02_g15610' => 'ccan', 'Cc05_g04350' => 'ccan', 'Cc09_g01580' => 'ccan', 'CDE01G0795' => 'cde', 'CDE02G2024' => 'cde', 'CDE02G2260' => 'cde', 'CDE02G4561' => 'cde', 'CDE05G2733' => 'cde', 'CDE05G3422' => 'cde', 'CDE06G2003' => 'cde', 'CDE08G0576' => 'cde', 'CDE09G0048' => 'cde', 'CDE11G0805' => 'cde', 'Cfa003644' => 'cfa', 'Cfa006290' => 'cfa', 'Cfa010080' => 'cfa', 'Cfa011376' => 'cfa', 'Cfa011576' => 'cfa', 'Cfa011577' => 'cfa', 'Cfa014389' => 'cfa', 'Ciclev10006044m.g' => 'ccl', 'Ciclev10006954m.g' => 'ccl', 'Ciclev10015131m.g' => 'ccl', 'Ciclev10015580m.g' => 'ccl', 'Ciclev10028359m.g' => 'ccl', 'Ciclev10028573m.g' => 'ccl', 'CiPaw.03G159300' => 'cil', 'CiPaw.04G115100' => 'cil', 'CiPaw.09G092800' => 'cil', 'CiPaw.10G071800' => 'cil', 'CiPaw.13G105800' => 'cil', 'CiPaw.13G141000' => 'cil', 'CiPaw.14G103400' => 'cil', 'ClCG01G012700' => 'cla', 'ClCG01G012720' => 'cla', 'ClCG01G021920' => 'cla', 'ClCG02G008870' => 'cla', 'ClCG02G020840' => 'cla', 'ClCG02G021930' => 'cla', 'COL.COLO4_19302' => 'col', 'COL.COLO4_25262' => 'col', 'COL.COLO4_31788' => 'col', 'Cpa.g.c34684' => 'cpa', 'Cpa.g.c36520.1' => 'cpa', 'Cpa.g.c45626' => 'cpa', 'Cpa.g.sc121.17' => 'cpa', 'Cpa.g.sc13.22' => 'cpa', 'Cpa.g.sc87.88' => 'cpa', 'Cre06.g261800' => 'cre', 'CsaV3_1G014500' => 'csa', 'CsaV3_1G014510' => 'csa', 'CsaV3_2G034880' => 'csa', 'CsaV3_6G014760' => 'csa', 'CsaV3_6G021500' => 'csa', 'CsaV3_6G048980' => 'csa', 'CSS0002511' => 'camsi', 'CSS0007556' => 'camsi', 'CSS0008532' => 'camsi', 'CSS0009709' => 'camsi', 'CSS0010486' => 'camsi', 'CSS0016768' => 'camsi', 'CSS0023512' => 'camsi', 'CSS0025341' => 'camsi', 'CSS0027999' => 'camsi', 'CSS0028944' => 'camsi', 'CSS0032292' => 'camsi', 'CSS0032464' => 'camsi', 'CSS0037153' => 'camsi', 'CSS0039256' => 'camsi', 'CSS0048392' => 'camsi', 'CSS0050458' => 'camsi', 'DCAR_004224' => 'dca', 'DCAR_006147' => 'dca', 'DCAR_006465' => 'dca', 'DCAR_008159' => 'dca', 'DCAR_012164' => 'dca', 'DCAR_019764' => 'dca', 'Dinv05418' => 'din', 'Dinv10839' => 'din', 'Dinv12521' => 'din', 'Dinv13900' => 'din', 'Dinv29426' => 'din', 'Duzib150G0263' => 'dzi', 'Duzib168G1178' => 'dzi', 'Duzib168G1924' => 'dzi', 'Duzib170G0299' => 'dzi', 'Duzib170G0813' => 'dzi', 'Duzib235G1128' => 'dzi', 'Duzib248G1060' => 'dzi', 'ECA232G1910' => 'eca', 'ECA233G4621' => 'eca', 'ECA238G1216' => 'eca', 'ECA238G1784' => 'eca', 'ECA248G1242' => 'eca', 'EL10Ac8g20071' => 'bvu', 'EL10Ac9g21086' => 'bvu', 'EL10Ac9g22407' => 'bvu', 'EL10Ac9g22412' => 'bvu', 'Eucgr.A01119' => 'egr', 'Eucgr.E04043' => 'egr', 'Eucgr.J00428' => 'egr', 'Eucgr.J00958' => 'egr', 'FAN11G3091' => 'fan', 'FAN11G3651' => 'fan', 'FAN16G2566' => 'fan', 'FAN21G3155' => 'fan', 'FAN21G3400' => 'fan', 'FAN21G3543' => 'fan', 'FAN25G0234' => 'fan', 'FAN25G1422' => 'fan', 'FAN25G3392' => 'fan', 'FvH4_3g01940' => 'fve', 'FvH4_3g29870' => 'fve', 'FvH4_3g33680' => 'fve', 'Glyma.09G004200' => 'gma', 'Glyma.11G151288' => 'gma', 'Glyma.11G189100' => 'gma', 'Glyma.12G072500' => 'gma', 'Glyma.12G085500' => 'gma', 'Glyma.12G181800' => 'gma', 'Glyma.12G193000' => 'gma', 'Glyma.13G309300' => 'gma', 'Glyma.13G319000' => 'gma', 'Glyma.17G012600' => 'gma', 'Gohir.A06G148600' => 'ghi', 'Gohir.A07G115800' => 'ghi', 'Gohir.A08G003600' => 'ghi', 'Gohir.A09G093300' => 'ghi', 'Gohir.A09G105400' => 'ghi', 'Gohir.A09G105500' => 'ghi', 'Gohir.D06G154600' => 'ghi', 'Gohir.D07G120200' => 'ghi', 'Gohir.D08G013900' => 'ghi', 'Gohir.D09G093100' => 'ghi', 'Gohir.D09G102200' => 'ghi', 'Gohir.D09G102300' => 'ghi', 'Gorai.001G129400' => 'gra', 'Gorai.004G008200' => 'gra', 'Gorai.006G109800' => 'gra', 'Gorai.006G119500' => 'gra', 'Gorai.006G121300' => 'gra', 'Gorai.010G180700' => 'gra', 'GSVIVG01012716001' => 'vvi', 'GSVIVG01025118001' => 'vvi', 'GSVIVG01030439001' => 'vvi', 'GSVIVG01031397001' => 'vvi', 'HanXRQChr01g0004201' => 'han', 'HanXRQChr02g0054941' => 'han', 'HanXRQChr05g0141811' => 'han', 'HanXRQChr07g0197751' => 'han', 'HanXRQChr11g0346691' => 'han', 'HanXRQChr13g0396971' => 'han', 'HanXRQChr14g0432951' => 'han', 'HanXRQChr14g0452001' => 'han', 'HanXRQChr15g0496681' => 'han', 'HanXRQChr17g0557491' => 'han', 'HanXRQChr17g0557501' => 'han', 'Haze_06809' => 'cav', 'Haze_12852' => 'cav', 'Haze_15850' => 'cav', 'Haze_23446' => 'cav', 'Haze_23942' => 'cav', 'Haze_23943' => 'cav', 'Hma1.2p1_0091F.1_g046450' => 'hma', 'Hma1.2p1_0128F.1_g059910' => 'hma', 'Hma1.2p1_0249F.1_g102260' => 'hma', 'Hma1.2p1_0453F.1_g156190' => 'hma', 'Hma1.2p1_0695F.1_g204380' => 'hma', 'Hma1.2p1_0749F.1_g212650' => 'hma', 'Hma1.2p1_2156F.1_g315420' => 'hma', 'Hma1.2p1_2686F.1_g326940' => 'hma', 'HPP92_006428' => 'vpl', 'HPP92_012069' => 'vpl', 'HPP92_014129' => 'vpl', 'HPP92_014133' => 'vpl', 'HPP92_017315' => 'vpl', 'HPP92_026445' => 'vpl', 'HPP92_026446' => 'vpl', 'Hund00774' => 'sun', 'Hund07682' => 'sun', 'Hund21413' => 'sun', 'Hund23462' => 'sun', 'Hund23463' => 'sun', 'Lalb_Chr03g0027911' => 'lal', 'Lalb_Chr13g0304271' => 'lal', 'Lalb_Chr19g0137471' => 'lal', 'Lalb_Chr22g0350651' => 'lal', 'Lalb_Chr24g0395151' => 'lal', 'Lj1A1231T40' => 'lonja', 'Lj1A221T48' => 'lonja', 'Lj1C924T12' => 'lonja', 'Lj2C993G6' => 'lonja', 'Lj3g0005790' => 'lja', 'Lj3g0015432' => 'lja', 'Lj3g0017722' => 'lja', 'Lj3g0018497' => 'lja', 'Lj4g0025071' => 'lja', 'Lsat_1_v5_gn_1_129680' => 'lsa', 'Lsat_1_v5_gn_2_25321' => 'lsa', 'Lsat_1_v5_gn_2_95461' => 'lsa', 'Lsat_1_v5_gn_4_159620' => 'lsa', 'Lsat_1_v5_gn_6_41301' => 'lsa', 'Lsat_1_v5_gn_6_74660' => 'lsa', 'Lsat_1_v5_gn_7_11520' => 'lsa', 'Lsat_1_v5_gn_9_67680' => 'lsa', 'Manes.04G008300' => 'mes', 'Manes.04G008400' => 'mes', 'Manes.04G026500' => 'mes', 'Manes.10G135300' => 'mes', 'Manes.11G157300' => 'mes', 'Manes.12G074000' => 'mes', 'Manes.16G006200' => 'mes', 'Manes.17G026400' => 'mes', 'Mapoly0024s0086' => 'mpo', 'Mapoly0024s0087' => 'mpo', 'Mapoly0071s0057' => 'mpo', 'Mapoly0204s0012' => 'mpo', 'MBI04_g37681_MAGBIO' => 'mbi', 'MBI05_g17779_MAGBIO' => 'mbi', 'MBI12_g31184_MAGBIO' => 'mbi', 'MBI17_g11083_MAGBIO' => 'mbi', 'MBI18_g03883_MAGBIO' => 'mbi', 'MBI18_g28940_MAGBIO' => 'mbi', 'MCO01G690' => 'mco', 'MD03G1109900' => 'mdo', 'MD03G1134800' => 'mdo', 'MD05G1348000' => 'mdo', 'MD10G1322400' => 'mdo', 'MD11G1123300' => 'mdo', 'MD11G1157600' => 'mdo', 'Medtr2g084875' => 'mtr', 'Medtr2g088130' => 'mtr', 'Medtr4g055310' => 'mtr', 'Medtr4g061070' => 'mtr', 'Medtr4g132250' => 'mtr', 'MELO3C004795.2' => 'cme', 'MELO3C004797.2' => 'cme', 'MELO3C007396.2' => 'cme', 'MELO3C019277.2' => 'cme', 'MELO3C021449.2' => 'cme', 'MELO3C025736.2' => 'cme', 'Migut.D02175' => 'egut', 'Migut.H01573' => 'egut', 'Migut.M01327' => 'egut', 'Migut.N02513' => 'egut', 'MSTRG.14638' => 'ama', 'MSTRG.18632' => 'ama', 'MSTRG.7203' => 'ama', 'Nitab4.5_0000533g0140' => 'nta', 'Nitab4.5_0000888g0150' => 'nta', 'Nitab4.5_0001453g0040' => 'nta', 'Nitab4.5_0002827g0090' => 'nta', 'Nitab4.5_0003082g0040' => 'nta', 'Nitab4.5_0007799g0040' => 'nta', 'Nitab4.5_0008983g0010' => 'nta', 'Nitab4.5_0009017g0020' => 'nta', 'Nn1g02132' => 'nnu', 'Nn1g03492' => 'nnu', 'Nn1g03493' => 'nnu', 'Nn1g03494' => 'nnu', 'Nn1g07164' => 'nnu', 'Nn1g07291' => 'nnu', 'Nn2g10655' => 'nnu', 'Nn2g11652' => 'nnu', 'Nn2g14008' => 'nnu', 'Nn3g17476' => 'nnu', 'Nn3g17477' => 'nnu', 'Nn4g22370' => 'nnu', 'Nn4g25255' => 'nnu', 'Nn5g27755' => 'nnu', 'Nn6g34260' => 'nnu', 'Nn6g35041' => 'nnu', 'Oeu005924.1' => 'oeu', 'Oeu008383.1' => 'oeu', 'Oeu014928.1' => 'oeu', 'Oeu019889.1' => 'oeu', 'Oeu022271.1' => 'oeu', 'Oeu025271.1' => 'oeu', 'Oeu036302.1' => 'oeu', 'Oeu044100.1' => 'oeu', 'Os01g0528300' => 'osa', 'Os03g0286200' => 'osa', 'Os04g0406600' => 'osa', 'Os07g0512000' => 'osa', 'Os07g0694600' => 'osa', 'Os08g0411000' => 'osa', 'Os09g0565700' => 'osa', 'Os09g0566050' => 'osa', 'Os10g0523700' => 'osa', 'Peaxi162Scf00002g00514' => 'pax', 'Peaxi162Scf00047g01817' => 'pax', 'Peaxi162Scf00114g00001' => 'pax', 'Peaxi162Scf00147g00613' => 'pax', 'Peaxi162Scf00389g00425' => 'pax', 'PGR042G1139' => 'pgr', 'PGR042G3273' => 'pgr', 'PGR102G2180' => 'pgr', 'PGR119G0234' => 'pgr', 'PGR119G0668' => 'pgr', 'PGSC0003DMG400007122' => 'stu', 'PGSC0003DMG400016478' => 'stu', 'PGSC0003DMG400025374' => 'stu', 'PGSC0003DMG400026536' => 'stu', 'Phvul.003G079600' => 'pvu', 'Phvul.005G115600' => 'pvu', 'Phvul.005G127100' => 'pvu', 'Phvul.006G149500' => 'pvu', 'Phvul.006G149600' => 'pvu', 'Phvul.011G071800' => 'pvu', 'Phvul.011G090400' => 'pvu', 'Potri.004G013400' => 'ptr', 'Potri.004G188100' => 'ptr', 'Potri.008G195500' => 'ptr', 'Potri.009G148800' => 'ptr', 'Potri.011G004700' => 'ptr', 'Pp3c17_22810' => 'ppa', 'Pp3c18_4480' => 'ppa', 'Pp3c19_13030' => 'ppa', 'Pp3c1_33620' => 'ppa', 'Pp3c2_9380' => 'ppa', 'PRCOL_00001023' => 'pco', 'Prupe.3G216300' => 'ppe', 'Prupe.4G019500' => 'ppe', 'Prupe.6G092500' => 'ppe', 'Prupe.6G119200' => 'ppe', 'Psat0s1945g0080' => 'psa', 'Psat0s4167g0040' => 'psa', 'Psat1g185800' => 'psa', 'Psat4g006440' => 'psa', 'Psat4g006480' => 'psa', 'Psat4g168120' => 'psa', 'Psat5g255680' => 'psa', 'Psat5g261760' => 'psa', 'Psat7g222120' => 'psa', 'PSO063G7252' => 'pso', 'PSO170G4778' => 'pso', 'PSO210G2249' => 'pso', 'PSO339G2411' => 'pso', 'PSO339G2457' => 'pso', 'PSO339G2854' => 'pso', 'PSO339G4288' => 'pso', 'PSO339G4615' => 'pso', 'PSO384G2796' => 'pso', 'PSO384G2940' => 'pso', 'PSO384G4227' => 'pso', 'PSO478G1425' => 'pso', 'PSO541G3863' => 'pso', 'PSO675G0507' => 'pso', 'PSO782G0338' => 'pso', 'PSO832G0644' => 'pso', 'QL01p013664' => 'qlo', 'QL01p036598' => 'qlo', 'QL05p072984' => 'qlo', 'QL08p005768' => 'qlo', 'QL08p032743' => 'qlo', 'QL93p0073_0439' => 'qlo', 'QL93p0073_0444' => 'qlo', 'RcHm_v2.0_Chr5g0002851' => 'rch', 'RcHm_v2.0_Chr5g0055201' => 'rch', 'RcHm_v2.0_Chr5g0061191' => 'rch', 'RcHm_v2.0_Chr7g0203231' => 'rch', 'Rhsim01G0208100' => 'rsi', 'Rhsim01G0208200' => 'rsi', 'Rhsim02G0106500' => 'rsi', 'Rhsim03G0107900' => 'rsi', 'Rhsim06G0163400' => 'rsi', 'Rhsim13G0105200' => 'rsi', 'Sabra04G0006300' => 'sbr', 'Sabra04G0127000' => 'sbr', 'Sabra08G0148700' => 'sbr', 'Sabra09G0117400' => 'sbr', 'SalBow1G3326' => 'sbo', 'SalBow3G3228' => 'sbo', 'SalBow6G1634' => 'sbo', 'SalBow6G3603' => 'sbo', 'SalBow6G5266' => 'sbo', 'SalBow7G2265' => 'sbo', 'SalBow8G0850' => 'sbo', 'SalBow8G2592' => 'sbo', 'Sc05g0009240' => 'sci', 'Sc12g0002300' => 'sci', 'Sc21g0000100' => 'sci', 'Sc21g0004720' => 'sci', 'Sed0002949' => 'sed', 'Sed0004114' => 'sed', 'Sed0004306' => 'sed', 'Sed0006172' => 'sed', 'Sed0008413' => 'sed', 'Sed0013809' => 'sed', 'Sed0019556' => 'sed', 'SEGI_03570' => 'sgi', 'SEGI_07859' => 'sgi', 'SEGI_15042' => 'sgi', 'SEGI_16263' => 'sgi', 'SEGI_16552' => 'sgi', 'SEGI_24331' => 'sgi', 'SEGI_27316' => 'sgi', 'SEGI_29521' => 'sgi', 'SEGI_41342' => 'sgi', 'SGA_v2.0_scaffold27G11617' => 'sas', 'SGA_v2.0_scaffold316G48428' => 'sas', 'SGA_v2.0_scaffold49G18261' => 'sas', 'SGA_v2.0_scaffold7G03831' => 'sas', 'SGA_v2.0_scaffold93G28359' => 'sas', 'SHI02210' => 'shi', 'SHI06028' => 'shi', 'SHI06321' => 'shi', 'SMO111G0012' => 'smo', 'SMO228G0080' => 'smo', 'SMO356G0756' => 'smo', 'Solyc02g080620.3' => 'sly', 'Solyc06g074530.1' => 'sly', 'Solyc11g066890.1' => 'sly', 'Solyc11g072520.3' => 'sly', 'Sopen02g025330' => 'spe', 'Sopen06g031000' => 'spe', 'Sopen09g008240' => 'spe', 'Sopen09g025210' => 'spe', 'Sopen11g026600' => 'spe', 'Sopen11g030170' => 'spe', 'Sp1g10420' => 'spa', 'Sp3g06570' => 'spa', 'Sp4g10660' => 'spa', 'Sp5g16460' => 'spa', 'Sp6g22710' => 'spa', 'TAR365G0112' => 'tar', 'TAR369G0717' => 'tar', 'TAR374G0976' => 'tar', 'TAR623G1128' => 'tar', 'TAR626G1937' => 'tar', 'TAR627G0123' => 'tar', 'TAR628G0305' => 'tar', 'TAR636G1176' => 'tar', 'TAR636G2442' => 'tar', 'THA.LOC104800556' => 'tha', 'THA.LOC104809501' => 'tha', 'THA.LOC104815126' => 'tha', 'THA.LOC104815732' => 'tha', 'THA.LOC104823528' => 'tha', 'Thecc.02G365600' => 'tca', 'Thecc.06G222300' => 'tca', 'Thecc.09G261800' => 'tca', 'Thecc.09G291400' => 'tca', 'Thhalv10003028m.g' => 'esa', 'Thhalv10007886m.g' => 'esa', 'Thhalv10016085m.g' => 'esa', 'Thhalv10016681m.g' => 'esa', 'Thhalv10020951m.g' => 'esa', 'TPR.G15598' => 'tpr', 'TPR.G29305' => 'tpr', 'TPR.G32395' => 'tpr', 'TPR.G36998' => 'tpr', 'TPR.G4227' => 'tpr', 'TWI18G1433' => 'twi', 'TWI31G0755' => 'twi', 'TWI38G0912' => 'twi', 'TWI75G1097' => 'twi', 'TWI75G1619' => 'twi', 'TWI79G1336' => 'twi', 'unitig_0.g943' => 'ugi', 'unitig_0.g944' => 'ugi', 'unitig_22.g6646' => 'ugi', 'unitig_37.g12681' => 'ugi', 'unitig_8.g3290' => 'ugi', 'vmacro03278' => 'vma', 'vmacro12197' => 'vma', 'vmacro14478' => 'vma', 'vmacro15787' => 'vma', 'vmacro15789' => 'vma', 'vmacro15790' => 'vma', 'vmacro15806' => 'vma', 'vmacro22907' => 'vma', 'vmacro22908' => 'vma', 'vmacro22909' => 'vma', 'vmacro23108' => 'vma', 'VMungo0540G0540' => 'vmu', 'VMungo0540G2468' => 'vmu', 'VMungo1080G0390' => 'vmu', 'VMungo1080G1165' => 'vmu', 'VMungo1127G0170' => 'vmu', 'VMungo1127G2099' => 'vmu', 'VMungo1215G3013' => 'vmu', 'Zm00001eb013110' => 'zma', 'Zm00001eb084260' => 'zma', 'Zm00001eb096110' => 'zma', 'Zm00001eb217510' => 'zma', 'Zm00001eb322550' => 'zma', 'Zm00001eb390770' => 'zma', 'Zm00001eb397170' => 'zma', 'Zm00001eb404610' => 'zma', 'Zm00001eb421790' => 'zma' ), 'gf_id' => 'HOM05D000911', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000911' ), 'data_identifier' => 'HOM05D000911', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000911', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27780' => 'bna', 'A03p35380' => 'bna', 'A04p21160' => 'bna', 'A05p40570' => 'bna', 'A06p26900' => 'bna', 'A08p33230' => 'bna', 'A09p65960' => 'bna', 'A10p18290' => 'bna', 'Aa31LG1G12990' => 'aar', 'Aa31LG1G2980' => 'aar', 'Aa31LG4G14320' => 'aar', 'Aa31LG7G11800' => 'aar', 'Aa31sc36G50' => 'aar', 'Aa31sc36G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3721' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5459' => 'aag', 'Actinidia03028' => 'ach', 'Actinidia03753' => 'ach', 'Actinidia04187' => 'ach', 'Actinidia05509' => 'ach', 'Actinidia24180' => 'ach', 'Actinidia26906' => 'ach', 'Actinidia37097' => 'ach', 'Actinidia38249' => 'ach', 'Ah.01g003470' => 'amhyb', 'Ah.01g004580' => 'amhyb', 'Ah.01g014850' => 'amhyb', 'Ah.01g016830' => 'amhyb', 'Ah.14g088000' => 'amhyb', 'AL1G22980' => 'aly', 'AL3G18990' => 'aly', 'AL4G22440' => 'aly', 'AL4G33180' => 'aly', 'AL5G22920' => 'aly', 'AL6G33660' => 'aly', 'AL8G20720' => 'aly', 'Aqoxy1G00935' => 'aox', 'Aqoxy1G02094' => 'aox', 'Aqoxy2G01239' => 'aox', 'Aqoxy4G01870' => 'aox', 'Aqoxy7G00450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.36ZVTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71EM27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5D6C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH3WRE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3NCM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RIM768' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YB5YRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z36GDV' => 'arhy', 'AT1G08250' => 'ath', 'AT1G11790' => 'ath', 'AT2G27820' => 'ath', 'AT3G07630' => 'ath', 'AT3G44720' => 'ath', 'AT5G22630' => 'ath', 'ATR0693G304' => 'atr', 'ATR0794G109' => 'atr', 'ATR0820G120' => 'atr', 'ATR1159G064' => 'atr', 'Atru.chr10.2239' => 'acertr', 'Atru.chr3.3371' => 'acertr', 'Atru.chr6.3202' => 'acertr', 'AUR62006499' => 'cqu', 'AUR62012718' => 'cqu', 'AUR62021938' => 'cqu', 'AUR62023932' => 'cqu', 'AUR62025034' => 'cqu', 'AUR62025035' => 'cqu', 'AUR62038307' => 'cqu', 'AUR62043466' => 'cqu', 'BcaB02g10748' => 'bca', 'BcaB03g13231' => 'bca', 'BcaB03g14689' => 'bca', 'BcaB05g22716' => 'bca', 'BcaB06g28172' => 'bca', 'BcaB08g36413' => 'bca', 'BcaC01g02186' => 'bca', 'BcaC01g04272' => 'bca', 'BcaC02g08080' => 'bca', 'BcaC02g08227' => 'bca', 'BcaC03g13901' => 'bca', 'BcaC04g19593' => 'bca', 'BcaC04g20874' => 'bca', 'BcaC05g29557' => 'bca', 'BcaC06g35505' => 'bca', 'BcaC07g41954' => 'bca', 'BcaC07g41955' => 'bca', 'BcaC07g41956' => 'bca', 'BcaC07g42519' => 'bca', 'BcaC07g42520' => 'bca', 'BcaC07g42523' => 'bca', 'BcaC07g42524' => 'bca', 'BcaC07g42525' => 'bca', 'BcaC08g47480' => 'bca', 'BcaC08g47481' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00530' => 'bna', 'BolC2t07178H' => 'bol', 'BolC3t16567H' => 'bol', 'BolC4t27234H' => 'bol', 'BolC5t29728H' => 'bol', 'BolC5t34622H' => 'bol', 'BolC6t40321H' => 'bol', 'BolC7t42028H' => 'bol', 'BolC8t49125H' => 'bol', 'BolC8t52538H' => 'bol', 'BolC8t52539H' => 'bol', 'BolC9t56681H' => 'bol', 'BolC9t58266H' => 'bol', 'BolSC21t60294H' => 'bol', 'BraA02t05670Z' => 'bra', 'BraA03t12716Z' => 'bra', 'BraA04t17685Z' => 'bra', 'BraA05t22788Z' => 'bra', 'BraA06t24032Z' => 'bra', 'BraA06t25625Z' => 'bra', 'BraA07t27930Z' => 'bra', 'BraA08t35242Z' => 'bra', 'BraA09t38609Z' => 'bra', 'BraA10t43905Z' => 'bra', 'C02p11060' => 'bna', 'C03p42990' => 'bna', 'C03p67310' => 'bna', 'C04p56990' => 'bna', 'C04p58660' => 'bna', 'C05p09890' => 'bna', 'C05p59680' => 'bna', 'C06p19830' => 'bna', 'C06p53040' => 'bna', 'C07p15230' => 'bna', 'C08p50070' => 'bna', 'C08p50090' => 'bna', 'C09p38330' => 'bna', 'C09p53940' => 'bna', 'CAN.G1014.1' => 'can', 'CAN.G644.30' => 'can', 'CAN.G84.47' => 'can', 'CAN.G919.8' => 'can', 'CANSAT54G0113' => 'cansat', 'CANSAT54G1286' => 'cansat', 'CANSAT64G1020' => 'cansat', 'CARHR008080' => 'chi', 'CARHR008090' => 'chi', 'CARHR012130' => 'chi', 'CARHR038390' => 'chi', 'CARHR082330' => 'chi', 'CARHR120520' => 'chi', 'CARHR151470' => 'chi', 'CARHR190950' => 'chi', 'Carub.0001s0760' => 'cru', 'Carub.0001s1146' => 'cru', 'Carub.0003s0721' => 'cru', 'Carub.0004s0858' => 'cru', 'Carub.0005s1040' => 'cru', 'Carub.0006s2035' => 'cru', 'Carub.0015s0005' => 'cru', 'Ca_01607_v3' => 'car', 'Ca_01677_v3' => 'car', 'Ca_06087_v3' => 'car', 'Ca_19238_v3' => 'car', 'Ca_19373_v3' => 'car', 'Ca_21079_v3' => 'car', 'CBR_g54016' => 'cbr', 'CBR_g54018' => 'cbr', 'CBR_g54020' => 'cbr', 'Cc01_g09780' => 'ccan', 'Cc01_g11680' => 'ccan', 'Cc02_g15610' => 'ccan', 'Cc05_g04350' => 'ccan', 'Cc09_g01580' => 'ccan', 'CDE01G0795' => 'cde', 'CDE02G2024' => 'cde', 'CDE02G2260' => 'cde', 'CDE02G4561' => 'cde', 'CDE05G2733' => 'cde', 'CDE05G3422' => 'cde', 'CDE06G2003' => 'cde', 'CDE08G0576' => 'cde', 'CDE09G0048' => 'cde', 'CDE11G0805' => 'cde', 'Cfa003644' => 'cfa', 'Cfa006290' => 'cfa', 'Cfa010080' => 'cfa', 'Cfa011376' => 'cfa', 'Cfa011576' => 'cfa', 'Cfa011577' => 'cfa', 'Cfa014389' => 'cfa', 'Ciclev10006044m.g' => 'ccl', 'Ciclev10006954m.g' => 'ccl', 'Ciclev10015131m.g' => 'ccl', 'Ciclev10015580m.g' => 'ccl', 'Ciclev10028359m.g' => 'ccl', 'Ciclev10028573m.g' => 'ccl', 'CiPaw.03G159300' => 'cil', 'CiPaw.04G115100' => 'cil', 'CiPaw.09G092800' => 'cil', 'CiPaw.10G071800' => 'cil', 'CiPaw.13G105800' => 'cil', 'CiPaw.13G141000' => 'cil', 'CiPaw.14G103400' => 'cil', 'ClCG01G012700' => 'cla', 'ClCG01G012720' => 'cla', 'ClCG01G021920' => 'cla', 'ClCG02G008870' => 'cla', 'ClCG02G020840' => 'cla', 'ClCG02G021930' => 'cla', 'COL.COLO4_19302' => 'col', 'COL.COLO4_25262' => 'col', 'COL.COLO4_31788' => 'col', 'Cpa.g.c34684' => 'cpa', 'Cpa.g.c36520.1' => 'cpa', 'Cpa.g.c45626' => 'cpa', 'Cpa.g.sc121.17' => 'cpa', 'Cpa.g.sc13.22' => 'cpa', 'Cpa.g.sc87.88' => 'cpa', 'Cre06.g261800' => 'cre', 'CsaV3_1G014500' => 'csa', 'CsaV3_1G014510' => 'csa', 'CsaV3_2G034880' => 'csa', 'CsaV3_6G014760' => 'csa', 'CsaV3_6G021500' => 'csa', 'CsaV3_6G048980' => 'csa', 'CSS0002511' => 'camsi', 'CSS0007556' => 'camsi', 'CSS0008532' => 'camsi', 'CSS0009709' => 'camsi', 'CSS0010486' => 'camsi', 'CSS0016768' => 'camsi', 'CSS0023512' => 'camsi', 'CSS0025341' => 'camsi', 'CSS0027999' => 'camsi', 'CSS0028944' => 'camsi', 'CSS0032292' => 'camsi', 'CSS0032464' => 'camsi', 'CSS0037153' => 'camsi', 'CSS0039256' => 'camsi', 'CSS0048392' => 'camsi', 'CSS0050458' => 'camsi', 'DCAR_004224' => 'dca', 'DCAR_006147' => 'dca', 'DCAR_006465' => 'dca', 'DCAR_008159' => 'dca', 'DCAR_012164' => 'dca', 'DCAR_019764' => 'dca', 'Dinv05418' => 'din', 'Dinv10839' => 'din', 'Dinv12521' => 'din', 'Dinv13900' => 'din', 'Dinv29426' => 'din', 'Duzib150G0263' => 'dzi', 'Duzib168G1178' => 'dzi', 'Duzib168G1924' => 'dzi', 'Duzib170G0299' => 'dzi', 'Duzib170G0813' => 'dzi', 'Duzib235G1128' => 'dzi', 'Duzib248G1060' => 'dzi', 'ECA232G1910' => 'eca', 'ECA233G4621' => 'eca', 'ECA238G1216' => 'eca', 'ECA238G1784' => 'eca', 'ECA248G1242' => 'eca', 'EL10Ac8g20071' => 'bvu', 'EL10Ac9g21086' => 'bvu', 'EL10Ac9g22407' => 'bvu', 'EL10Ac9g22412' => 'bvu', 'Eucgr.A01119' => 'egr', 'Eucgr.E04043' => 'egr', 'Eucgr.J00428' => 'egr', 'Eucgr.J00958' => 'egr', 'FAN11G3091' => 'fan', 'FAN11G3651' => 'fan', 'FAN16G2566' => 'fan', 'FAN21G3155' => 'fan', 'FAN21G3400' => 'fan', 'FAN21G3543' => 'fan', 'FAN25G0234' => 'fan', 'FAN25G1422' => 'fan', 'FAN25G3392' => 'fan', 'FvH4_3g01940' => 'fve', 'FvH4_3g29870' => 'fve', 'FvH4_3g33680' => 'fve', 'Glyma.09G004200' => 'gma', 'Glyma.11G151288' => 'gma', 'Glyma.11G189100' => 'gma', 'Glyma.12G072500' => 'gma', 'Glyma.12G085500' => 'gma', 'Glyma.12G181800' => 'gma', 'Glyma.12G193000' => 'gma', 'Glyma.13G309300' => 'gma', 'Glyma.13G319000' => 'gma', 'Glyma.17G012600' => 'gma', 'Gohir.A06G148600' => 'ghi', 'Gohir.A07G115800' => 'ghi', 'Gohir.A08G003600' => 'ghi', 'Gohir.A09G093300' => 'ghi', 'Gohir.A09G105400' => 'ghi', 'Gohir.A09G105500' => 'ghi', 'Gohir.D06G154600' => 'ghi', 'Gohir.D07G120200' => 'ghi', 'Gohir.D08G013900' => 'ghi', 'Gohir.D09G093100' => 'ghi', 'Gohir.D09G102200' => 'ghi', 'Gohir.D09G102300' => 'ghi', 'Gorai.001G129400' => 'gra', 'Gorai.004G008200' => 'gra', 'Gorai.006G109800' => 'gra', 'Gorai.006G119500' => 'gra', 'Gorai.006G121300' => 'gra', 'Gorai.010G180700' => 'gra', 'GSVIVG01012716001' => 'vvi', 'GSVIVG01025118001' => 'vvi', 'GSVIVG01030439001' => 'vvi', 'GSVIVG01031397001' => 'vvi', 'HanXRQChr01g0004201' => 'han', 'HanXRQChr02g0054941' => 'han', 'HanXRQChr05g0141811' => 'han', 'HanXRQChr07g0197751' => 'han', 'HanXRQChr11g0346691' => 'han', 'HanXRQChr13g0396971' => 'han', 'HanXRQChr14g0432951' => 'han', 'HanXRQChr14g0452001' => 'han', 'HanXRQChr15g0496681' => 'han', 'HanXRQChr17g0557491' => 'han', 'HanXRQChr17g0557501' => 'han', 'Haze_06809' => 'cav', 'Haze_12852' => 'cav', 'Haze_15850' => 'cav', 'Haze_23446' => 'cav', 'Haze_23942' => 'cav', 'Haze_23943' => 'cav', 'Hma1.2p1_0091F.1_g046450' => 'hma', 'Hma1.2p1_0128F.1_g059910' => 'hma', 'Hma1.2p1_0249F.1_g102260' => 'hma', 'Hma1.2p1_0453F.1_g156190' => 'hma', 'Hma1.2p1_0695F.1_g204380' => 'hma', 'Hma1.2p1_0749F.1_g212650' => 'hma', 'Hma1.2p1_2156F.1_g315420' => 'hma', 'Hma1.2p1_2686F.1_g326940' => 'hma', 'HPP92_006428' => 'vpl', 'HPP92_012069' => 'vpl', 'HPP92_014129' => 'vpl', 'HPP92_014133' => 'vpl', 'HPP92_017315' => 'vpl', 'HPP92_026445' => 'vpl', 'HPP92_026446' => 'vpl', 'Hund00774' => 'sun', 'Hund07682' => 'sun', 'Hund21413' => 'sun', 'Hund23462' => 'sun', 'Hund23463' => 'sun', 'Lalb_Chr03g0027911' => 'lal', 'Lalb_Chr13g0304271' => 'lal', 'Lalb_Chr19g0137471' => 'lal', 'Lalb_Chr22g0350651' => 'lal', 'Lalb_Chr24g0395151' => 'lal', 'Lj1A1231T40' => 'lonja', 'Lj1A221T48' => 'lonja', 'Lj1C924T12' => 'lonja', 'Lj2C993G6' => 'lonja', 'Lj3g0005790' => 'lja', 'Lj3g0015432' => 'lja', 'Lj3g0017722' => 'lja', 'Lj3g0018497' => 'lja', 'Lj4g0025071' => 'lja', 'Lsat_1_v5_gn_1_129680' => 'lsa', 'Lsat_1_v5_gn_2_25321' => 'lsa', 'Lsat_1_v5_gn_2_95461' => 'lsa', 'Lsat_1_v5_gn_4_159620' => 'lsa', 'Lsat_1_v5_gn_6_41301' => 'lsa', 'Lsat_1_v5_gn_6_74660' => 'lsa', 'Lsat_1_v5_gn_7_11520' => 'lsa', 'Lsat_1_v5_gn_9_67680' => 'lsa', 'Manes.04G008300' => 'mes', 'Manes.04G008400' => 'mes', 'Manes.04G026500' => 'mes', 'Manes.10G135300' => 'mes', 'Manes.11G157300' => 'mes', 'Manes.12G074000' => 'mes', 'Manes.16G006200' => 'mes', 'Manes.17G026400' => 'mes', 'Mapoly0024s0086' => 'mpo', 'Mapoly0024s0087' => 'mpo', 'Mapoly0071s0057' => 'mpo', 'Mapoly0204s0012' => 'mpo', 'MBI04_g37681_MAGBIO' => 'mbi', 'MBI05_g17779_MAGBIO' => 'mbi', 'MBI12_g31184_MAGBIO' => 'mbi', 'MBI17_g11083_MAGBIO' => 'mbi', 'MBI18_g03883_MAGBIO' => 'mbi', 'MBI18_g28940_MAGBIO' => 'mbi', 'MCO01G690' => 'mco', 'MD03G1109900' => 'mdo', 'MD03G1134800' => 'mdo', 'MD05G1348000' => 'mdo', 'MD10G1322400' => 'mdo', 'MD11G1123300' => 'mdo', 'MD11G1157600' => 'mdo', 'Medtr2g084875' => 'mtr', 'Medtr2g088130' => 'mtr', 'Medtr4g055310' => 'mtr', 'Medtr4g061070' => 'mtr', 'Medtr4g132250' => 'mtr', 'MELO3C004795.2' => 'cme', 'MELO3C004797.2' => 'cme', 'MELO3C007396.2' => 'cme', 'MELO3C019277.2' => 'cme', 'MELO3C021449.2' => 'cme', 'MELO3C025736.2' => 'cme', 'Migut.D02175' => 'egut', 'Migut.H01573' => 'egut', 'Migut.M01327' => 'egut', 'Migut.N02513' => 'egut', 'MSTRG.14638' => 'ama', 'MSTRG.18632' => 'ama', 'MSTRG.7203' => 'ama', 'Nitab4.5_0000533g0140' => 'nta', 'Nitab4.5_0000888g0150' => 'nta', 'Nitab4.5_0001453g0040' => 'nta', 'Nitab4.5_0002827g0090' => 'nta', 'Nitab4.5_0003082g0040' => 'nta', 'Nitab4.5_0007799g0040' => 'nta', 'Nitab4.5_0008983g0010' => 'nta', 'Nitab4.5_0009017g0020' => 'nta', 'Nn1g02132' => 'nnu', 'Nn1g03492' => 'nnu', 'Nn1g03493' => 'nnu', 'Nn1g03494' => 'nnu', 'Nn1g07164' => 'nnu', 'Nn1g07291' => 'nnu', 'Nn2g10655' => 'nnu', 'Nn2g11652' => 'nnu', 'Nn2g14008' => 'nnu', 'Nn3g17476' => 'nnu', 'Nn3g17477' => 'nnu', 'Nn4g22370' => 'nnu', 'Nn4g25255' => 'nnu', 'Nn5g27755' => 'nnu', 'Nn6g34260' => 'nnu', 'Nn6g35041' => 'nnu', 'Oeu005924.1' => 'oeu', 'Oeu008383.1' => 'oeu', 'Oeu014928.1' => 'oeu', 'Oeu019889.1' => 'oeu', 'Oeu022271.1' => 'oeu', 'Oeu025271.1' => 'oeu', 'Oeu036302.1' => 'oeu', 'Oeu044100.1' => 'oeu', 'Os01g0528300' => 'osa', 'Os03g0286200' => 'osa', 'Os04g0406600' => 'osa', 'Os07g0512000' => 'osa', 'Os07g0694600' => 'osa', 'Os08g0411000' => 'osa', 'Os09g0565700' => 'osa', 'Os09g0566050' => 'osa', 'Os10g0523700' => 'osa', 'Peaxi162Scf00002g00514' => 'pax', 'Peaxi162Scf00047g01817' => 'pax', 'Peaxi162Scf00114g00001' => 'pax', 'Peaxi162Scf00147g00613' => 'pax', 'Peaxi162Scf00389g00425' => 'pax', 'PGR042G1139' => 'pgr', 'PGR042G3273' => 'pgr', 'PGR102G2180' => 'pgr', 'PGR119G0234' => 'pgr', 'PGR119G0668' => 'pgr', 'PGSC0003DMG400007122' => 'stu', 'PGSC0003DMG400016478' => 'stu', 'PGSC0003DMG400025374' => 'stu', 'PGSC0003DMG400026536' => 'stu', 'Phvul.003G079600' => 'pvu', 'Phvul.005G115600' => 'pvu', 'Phvul.005G127100' => 'pvu', 'Phvul.006G149500' => 'pvu', 'Phvul.006G149600' => 'pvu', 'Phvul.011G071800' => 'pvu', 'Phvul.011G090400' => 'pvu', 'Potri.004G013400' => 'ptr', 'Potri.004G188100' => 'ptr', 'Potri.008G195500' => 'ptr', 'Potri.009G148800' => 'ptr', 'Potri.011G004700' => 'ptr', 'Pp3c17_22810' => 'ppa', 'Pp3c18_4480' => 'ppa', 'Pp3c19_13030' => 'ppa', 'Pp3c1_33620' => 'ppa', 'Pp3c2_9380' => 'ppa', 'PRCOL_00001023' => 'pco', 'Prupe.3G216300' => 'ppe', 'Prupe.4G019500' => 'ppe', 'Prupe.6G092500' => 'ppe', 'Prupe.6G119200' => 'ppe', 'Psat0s1945g0080' => 'psa', 'Psat0s4167g0040' => 'psa', 'Psat1g185800' => 'psa', 'Psat4g006440' => 'psa', 'Psat4g006480' => 'psa', 'Psat4g168120' => 'psa', 'Psat5g255680' => 'psa', 'Psat5g261760' => 'psa', 'Psat7g222120' => 'psa', 'PSO063G7252' => 'pso', 'PSO170G4778' => 'pso', 'PSO210G2249' => 'pso', 'PSO339G2411' => 'pso', 'PSO339G2457' => 'pso', 'PSO339G2854' => 'pso', 'PSO339G4288' => 'pso', 'PSO339G4615' => 'pso', 'PSO384G2796' => 'pso', 'PSO384G2940' => 'pso', 'PSO384G4227' => 'pso', 'PSO478G1425' => 'pso', 'PSO541G3863' => 'pso', 'PSO675G0507' => 'pso', 'PSO782G0338' => 'pso', 'PSO832G0644' => 'pso', 'QL01p013664' => 'qlo', 'QL01p036598' => 'qlo', 'QL05p072984' => 'qlo', 'QL08p005768' => 'qlo', 'QL08p032743' => 'qlo', 'QL93p0073_0439' => 'qlo', 'QL93p0073_0444' => 'qlo', 'RcHm_v2.0_Chr5g0002851' => 'rch', 'RcHm_v2.0_Chr5g0055201' => 'rch', 'RcHm_v2.0_Chr5g0061191' => 'rch', 'RcHm_v2.0_Chr7g0203231' => 'rch', 'Rhsim01G0208100' => 'rsi', 'Rhsim01G0208200' => 'rsi', 'Rhsim02G0106500' => 'rsi', 'Rhsim03G0107900' => 'rsi', 'Rhsim06G0163400' => 'rsi', 'Rhsim13G0105200' => 'rsi', 'Sabra04G0006300' => 'sbr', 'Sabra04G0127000' => 'sbr', 'Sabra08G0148700' => 'sbr', 'Sabra09G0117400' => 'sbr', 'SalBow1G3326' => 'sbo', 'SalBow3G3228' => 'sbo', 'SalBow6G1634' => 'sbo', 'SalBow6G3603' => 'sbo', 'SalBow6G5266' => 'sbo', 'SalBow7G2265' => 'sbo', 'SalBow8G0850' => 'sbo', 'SalBow8G2592' => 'sbo', 'Sc05g0009240' => 'sci', 'Sc12g0002300' => 'sci', 'Sc21g0000100' => 'sci', 'Sc21g0004720' => 'sci', 'Sed0002949' => 'sed', 'Sed0004114' => 'sed', 'Sed0004306' => 'sed', 'Sed0006172' => 'sed', 'Sed0008413' => 'sed', 'Sed0013809' => 'sed', 'Sed0019556' => 'sed', 'SEGI_03570' => 'sgi', 'SEGI_07859' => 'sgi', 'SEGI_15042' => 'sgi', 'SEGI_16263' => 'sgi', 'SEGI_16552' => 'sgi', 'SEGI_24331' => 'sgi', 'SEGI_27316' => 'sgi', 'SEGI_29521' => 'sgi', 'SEGI_41342' => 'sgi', 'SGA_v2.0_scaffold27G11617' => 'sas', 'SGA_v2.0_scaffold316G48428' => 'sas', 'SGA_v2.0_scaffold49G18261' => 'sas', 'SGA_v2.0_scaffold7G03831' => 'sas', 'SGA_v2.0_scaffold93G28359' => 'sas', 'SHI02210' => 'shi', 'SHI06028' => 'shi', 'SHI06321' => 'shi', 'SMO111G0012' => 'smo', 'SMO228G0080' => 'smo', 'SMO356G0756' => 'smo', 'Solyc02g080620.3' => 'sly', 'Solyc06g074530.1' => 'sly', 'Solyc11g066890.1' => 'sly', 'Solyc11g072520.3' => 'sly', 'Sopen02g025330' => 'spe', 'Sopen06g031000' => 'spe', 'Sopen09g008240' => 'spe', 'Sopen09g025210' => 'spe', 'Sopen11g026600' => 'spe', 'Sopen11g030170' => 'spe', 'Sp1g10420' => 'spa', 'Sp3g06570' => 'spa', 'Sp4g10660' => 'spa', 'Sp5g16460' => 'spa', 'Sp6g22710' => 'spa', 'TAR365G0112' => 'tar', 'TAR369G0717' => 'tar', 'TAR374G0976' => 'tar', 'TAR623G1128' => 'tar', 'TAR626G1937' => 'tar', 'TAR627G0123' => 'tar', 'TAR628G0305' => 'tar', 'TAR636G1176' => 'tar', 'TAR636G2442' => 'tar', 'THA.LOC104800556' => 'tha', 'THA.LOC104809501' => 'tha', 'THA.LOC104815126' => 'tha', 'THA.LOC104815732' => 'tha', 'THA.LOC104823528' => 'tha', 'Thecc.02G365600' => 'tca', 'Thecc.06G222300' => 'tca', 'Thecc.09G261800' => 'tca', 'Thecc.09G291400' => 'tca', 'Thhalv10003028m.g' => 'esa', 'Thhalv10007886m.g' => 'esa', 'Thhalv10016085m.g' => 'esa', 'Thhalv10016681m.g' => 'esa', 'Thhalv10020951m.g' => 'esa', 'TPR.G15598' => 'tpr', 'TPR.G29305' => 'tpr', 'TPR.G32395' => 'tpr', 'TPR.G36998' => 'tpr', 'TPR.G4227' => 'tpr', 'TWI18G1433' => 'twi', 'TWI31G0755' => 'twi', 'TWI38G0912' => 'twi', 'TWI75G1097' => 'twi', 'TWI75G1619' => 'twi', 'TWI79G1336' => 'twi', 'unitig_0.g943' => 'ugi', 'unitig_0.g944' => 'ugi', 'unitig_22.g6646' => 'ugi', 'unitig_37.g12681' => 'ugi', 'unitig_8.g3290' => 'ugi', 'vmacro03278' => 'vma', 'vmacro12197' => 'vma', 'vmacro14478' => 'vma', 'vmacro15787' => 'vma', 'vmacro15789' => 'vma', 'vmacro15790' => 'vma', 'vmacro15806' => 'vma', 'vmacro22907' => 'vma', 'vmacro22908' => 'vma', 'vmacro22909' => 'vma', 'vmacro23108' => 'vma', 'VMungo0540G0540' => 'vmu', 'VMungo0540G2468' => 'vmu', 'VMungo1080G0390' => 'vmu', 'VMungo1080G1165' => 'vmu', 'VMungo1127G0170' => 'vmu', 'VMungo1127G2099' => 'vmu', 'VMungo1215G3013' => 'vmu', 'Zm00001eb013110' => 'zma', 'Zm00001eb084260' => 'zma', 'Zm00001eb096110' => 'zma', 'Zm00001eb217510' => 'zma', 'Zm00001eb322550' => 'zma', 'Zm00001eb390770' => 'zma', 'Zm00001eb397170' => 'zma', 'Zm00001eb404610' => 'zma', 'Zm00001eb421790' => 'zma' ) $gf_id = 'HOM05D000911' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000911' ) $data_identifier = 'HOM05D000911' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 16, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 5, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 6, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 8, 'nnu' => (int) 16, 'oeu' => (int) 8, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 5, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 16, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421790' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000911', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27780' => 'bna', 'A03p35380' => 'bna', 'A04p21160' => 'bna', 'A05p40570' => 'bna', 'A06p26900' => 'bna', 'A08p33230' => 'bna', 'A09p65960' => 'bna', 'A10p18290' => 'bna', 'Aa31LG1G12990' => 'aar', 'Aa31LG1G2980' => 'aar', 'Aa31LG4G14320' => 'aar', 'Aa31LG7G11800' => 'aar', 'Aa31sc36G50' => 'aar', 'Aa31sc36G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3721' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5459' => 'aag', 'Actinidia03028' => 'ach', 'Actinidia03753' => 'ach', 'Actinidia04187' => 'ach', 'Actinidia05509' => 'ach', 'Actinidia24180' => 'ach', 'Actinidia26906' => 'ach', 'Actinidia37097' => 'ach', 'Actinidia38249' => 'ach', 'Ah.01g003470' => 'amhyb', 'Ah.01g004580' => 'amhyb', 'Ah.01g014850' => 'amhyb', 'Ah.01g016830' => 'amhyb', 'Ah.14g088000' => 'amhyb', 'AL1G22980' => 'aly', 'AL3G18990' => 'aly', 'AL4G22440' => 'aly', 'AL4G33180' => 'aly', 'AL5G22920' => 'aly', 'AL6G33660' => 'aly', 'AL8G20720' => 'aly', 'Aqoxy1G00935' => 'aox', 'Aqoxy1G02094' => 'aox', 'Aqoxy2G01239' => 'aox', 'Aqoxy4G01870' => 'aox', 'Aqoxy7G00450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.36ZVTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71EM27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5D6C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH3WRE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3NCM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RIM768' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YB5YRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z36GDV' => 'arhy', 'AT1G08250' => 'ath', 'AT1G11790' => 'ath', 'AT2G27820' => 'ath', 'AT3G07630' => 'ath', 'AT3G44720' => 'ath', 'AT5G22630' => 'ath', 'ATR0693G304' => 'atr', 'ATR0794G109' => 'atr', 'ATR0820G120' => 'atr', 'ATR1159G064' => 'atr', 'Atru.chr10.2239' => 'acertr', 'Atru.chr3.3371' => 'acertr', 'Atru.chr6.3202' => 'acertr', 'AUR62006499' => 'cqu', 'AUR62012718' => 'cqu', 'AUR62021938' => 'cqu', 'AUR62023932' => 'cqu', 'AUR62025034' => 'cqu', 'AUR62025035' => 'cqu', 'AUR62038307' => 'cqu', 'AUR62043466' => 'cqu', 'BcaB02g10748' => 'bca', 'BcaB03g13231' => 'bca', 'BcaB03g14689' => 'bca', 'BcaB05g22716' => 'bca', 'BcaB06g28172' => 'bca', 'BcaB08g36413' => 'bca', 'BcaC01g02186' => 'bca', 'BcaC01g04272' => 'bca', 'BcaC02g08080' => 'bca', 'BcaC02g08227' => 'bca', 'BcaC03g13901' => 'bca', 'BcaC04g19593' => 'bca', 'BcaC04g20874' => 'bca', 'BcaC05g29557' => 'bca', 'BcaC06g35505' => 'bca', 'BcaC07g41954' => 'bca', 'BcaC07g41955' => 'bca', 'BcaC07g41956' => 'bca', 'BcaC07g42519' => 'bca', 'BcaC07g42520' => 'bca', 'BcaC07g42523' => 'bca', 'BcaC07g42524' => 'bca', 'BcaC07g42525' => 'bca', 'BcaC08g47480' => 'bca', 'BcaC08g47481' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00530' => 'bna', 'BolC2t07178H' => 'bol', 'BolC3t16567H' => 'bol', 'BolC4t27234H' => 'bol', 'BolC5t29728H' => 'bol', 'BolC5t34622H' => 'bol', 'BolC6t40321H' => 'bol', 'BolC7t42028H' => 'bol', 'BolC8t49125H' => 'bol', 'BolC8t52538H' => 'bol', 'BolC8t52539H' => 'bol', 'BolC9t56681H' => 'bol', 'BolC9t58266H' => 'bol', 'BolSC21t60294H' => 'bol', 'BraA02t05670Z' => 'bra', 'BraA03t12716Z' => 'bra', 'BraA04t17685Z' => 'bra', 'BraA05t22788Z' => 'bra', 'BraA06t24032Z' => 'bra', 'BraA06t25625Z' => 'bra', 'BraA07t27930Z' => 'bra', 'BraA08t35242Z' => 'bra', 'BraA09t38609Z' => 'bra', 'BraA10t43905Z' => 'bra', 'C02p11060' => 'bna', 'C03p42990' => 'bna', 'C03p67310' => 'bna', 'C04p56990' => 'bna', 'C04p58660' => 'bna', 'C05p09890' => 'bna', 'C05p59680' => 'bna', 'C06p19830' => 'bna', 'C06p53040' => 'bna', 'C07p15230' => 'bna', 'C08p50070' => 'bna', 'C08p50090' => 'bna', 'C09p38330' => 'bna', 'C09p53940' => 'bna', 'CAN.G1014.1' => 'can', 'CAN.G644.30' => 'can', 'CAN.G84.47' => 'can', 'CAN.G919.8' => 'can', 'CANSAT54G0113' => 'cansat', 'CANSAT54G1286' => 'cansat', 'CANSAT64G1020' => 'cansat', 'CARHR008080' => 'chi', 'CARHR008090' => 'chi', 'CARHR012130' => 'chi', 'CARHR038390' => 'chi', 'CARHR082330' => 'chi', 'CARHR120520' => 'chi', 'CARHR151470' => 'chi', 'CARHR190950' => 'chi', 'Carub.0001s0760' => 'cru', 'Carub.0001s1146' => 'cru', 'Carub.0003s0721' => 'cru', 'Carub.0004s0858' => 'cru', 'Carub.0005s1040' => 'cru', 'Carub.0006s2035' => 'cru', 'Carub.0015s0005' => 'cru', 'Ca_01607_v3' => 'car', 'Ca_01677_v3' => 'car', 'Ca_06087_v3' => 'car', 'Ca_19238_v3' => 'car', 'Ca_19373_v3' => 'car', 'Ca_21079_v3' => 'car', 'CBR_g54016' => 'cbr', 'CBR_g54018' => 'cbr', 'CBR_g54020' => 'cbr', 'Cc01_g09780' => 'ccan', 'Cc01_g11680' => 'ccan', 'Cc02_g15610' => 'ccan', 'Cc05_g04350' => 'ccan', 'Cc09_g01580' => 'ccan', 'CDE01G0795' => 'cde', 'CDE02G2024' => 'cde', 'CDE02G2260' => 'cde', 'CDE02G4561' => 'cde', 'CDE05G2733' => 'cde', 'CDE05G3422' => 'cde', 'CDE06G2003' => 'cde', 'CDE08G0576' => 'cde', 'CDE09G0048' => 'cde', 'CDE11G0805' => 'cde', 'Cfa003644' => 'cfa', 'Cfa006290' => 'cfa', 'Cfa010080' => 'cfa', 'Cfa011376' => 'cfa', 'Cfa011576' => 'cfa', 'Cfa011577' => 'cfa', 'Cfa014389' => 'cfa', 'Ciclev10006044m.g' => 'ccl', 'Ciclev10006954m.g' => 'ccl', 'Ciclev10015131m.g' => 'ccl', 'Ciclev10015580m.g' => 'ccl', 'Ciclev10028359m.g' => 'ccl', 'Ciclev10028573m.g' => 'ccl', 'CiPaw.03G159300' => 'cil', 'CiPaw.04G115100' => 'cil', 'CiPaw.09G092800' => 'cil', 'CiPaw.10G071800' => 'cil', 'CiPaw.13G105800' => 'cil', 'CiPaw.13G141000' => 'cil', 'CiPaw.14G103400' => 'cil', 'ClCG01G012700' => 'cla', 'ClCG01G012720' => 'cla', 'ClCG01G021920' => 'cla', 'ClCG02G008870' => 'cla', 'ClCG02G020840' => 'cla', 'ClCG02G021930' => 'cla', 'COL.COLO4_19302' => 'col', 'COL.COLO4_25262' => 'col', 'COL.COLO4_31788' => 'col', 'Cpa.g.c34684' => 'cpa', 'Cpa.g.c36520.1' => 'cpa', 'Cpa.g.c45626' => 'cpa', 'Cpa.g.sc121.17' => 'cpa', 'Cpa.g.sc13.22' => 'cpa', 'Cpa.g.sc87.88' => 'cpa', 'Cre06.g261800' => 'cre', 'CsaV3_1G014500' => 'csa', 'CsaV3_1G014510' => 'csa', 'CsaV3_2G034880' => 'csa', 'CsaV3_6G014760' => 'csa', 'CsaV3_6G021500' => 'csa', 'CsaV3_6G048980' => 'csa', 'CSS0002511' => 'camsi', 'CSS0007556' => 'camsi', 'CSS0008532' => 'camsi', 'CSS0009709' => 'camsi', 'CSS0010486' => 'camsi', 'CSS0016768' => 'camsi', 'CSS0023512' => 'camsi', 'CSS0025341' => 'camsi', 'CSS0027999' => 'camsi', 'CSS0028944' => 'camsi', 'CSS0032292' => 'camsi', 'CSS0032464' => 'camsi', 'CSS0037153' => 'camsi', 'CSS0039256' => 'camsi', 'CSS0048392' => 'camsi', 'CSS0050458' => 'camsi', 'DCAR_004224' => 'dca', 'DCAR_006147' => 'dca', 'DCAR_006465' => 'dca', 'DCAR_008159' => 'dca', 'DCAR_012164' => 'dca', 'DCAR_019764' => 'dca', 'Dinv05418' => 'din', 'Dinv10839' => 'din', 'Dinv12521' => 'din', 'Dinv13900' => 'din', 'Dinv29426' => 'din', 'Duzib150G0263' => 'dzi', 'Duzib168G1178' => 'dzi', 'Duzib168G1924' => 'dzi', 'Duzib170G0299' => 'dzi', 'Duzib170G0813' => 'dzi', 'Duzib235G1128' => 'dzi', 'Duzib248G1060' => 'dzi', 'ECA232G1910' => 'eca', 'ECA233G4621' => 'eca', 'ECA238G1216' => 'eca', 'ECA238G1784' => 'eca', 'ECA248G1242' => 'eca', 'EL10Ac8g20071' => 'bvu', 'EL10Ac9g21086' => 'bvu', 'EL10Ac9g22407' => 'bvu', 'EL10Ac9g22412' => 'bvu', 'Eucgr.A01119' => 'egr', 'Eucgr.E04043' => 'egr', 'Eucgr.J00428' => 'egr', 'Eucgr.J00958' => 'egr', 'FAN11G3091' => 'fan', 'FAN11G3651' => 'fan', 'FAN16G2566' => 'fan', 'FAN21G3155' => 'fan', 'FAN21G3400' => 'fan', 'FAN21G3543' => 'fan', 'FAN25G0234' => 'fan', 'FAN25G1422' => 'fan', 'FAN25G3392' => 'fan', 'FvH4_3g01940' => 'fve', 'FvH4_3g29870' => 'fve', 'FvH4_3g33680' => 'fve', 'Glyma.09G004200' => 'gma', 'Glyma.11G151288' => 'gma', 'Glyma.11G189100' => 'gma', 'Glyma.12G072500' => 'gma', 'Glyma.12G085500' => 'gma', 'Glyma.12G181800' => 'gma', 'Glyma.12G193000' => 'gma', 'Glyma.13G309300' => 'gma', 'Glyma.13G319000' => 'gma', 'Glyma.17G012600' => 'gma', 'Gohir.A06G148600' => 'ghi', 'Gohir.A07G115800' => 'ghi', 'Gohir.A08G003600' => 'ghi', 'Gohir.A09G093300' => 'ghi', 'Gohir.A09G105400' => 'ghi', 'Gohir.A09G105500' => 'ghi', 'Gohir.D06G154600' => 'ghi', 'Gohir.D07G120200' => 'ghi', 'Gohir.D08G013900' => 'ghi', 'Gohir.D09G093100' => 'ghi', 'Gohir.D09G102200' => 'ghi', 'Gohir.D09G102300' => 'ghi', 'Gorai.001G129400' => 'gra', 'Gorai.004G008200' => 'gra', 'Gorai.006G109800' => 'gra', 'Gorai.006G119500' => 'gra', 'Gorai.006G121300' => 'gra', 'Gorai.010G180700' => 'gra', 'GSVIVG01012716001' => 'vvi', 'GSVIVG01025118001' => 'vvi', 'GSVIVG01030439001' => 'vvi', 'GSVIVG01031397001' => 'vvi', 'HanXRQChr01g0004201' => 'han', 'HanXRQChr02g0054941' => 'han', 'HanXRQChr05g0141811' => 'han', 'HanXRQChr07g0197751' => 'han', 'HanXRQChr11g0346691' => 'han', 'HanXRQChr13g0396971' => 'han', 'HanXRQChr14g0432951' => 'han', 'HanXRQChr14g0452001' => 'han', 'HanXRQChr15g0496681' => 'han', 'HanXRQChr17g0557491' => 'han', 'HanXRQChr17g0557501' => 'han', 'Haze_06809' => 'cav', 'Haze_12852' => 'cav', 'Haze_15850' => 'cav', 'Haze_23446' => 'cav', 'Haze_23942' => 'cav', 'Haze_23943' => 'cav', 'Hma1.2p1_0091F.1_g046450' => 'hma', 'Hma1.2p1_0128F.1_g059910' => 'hma', 'Hma1.2p1_0249F.1_g102260' => 'hma', 'Hma1.2p1_0453F.1_g156190' => 'hma', 'Hma1.2p1_0695F.1_g204380' => 'hma', 'Hma1.2p1_0749F.1_g212650' => 'hma', 'Hma1.2p1_2156F.1_g315420' => 'hma', 'Hma1.2p1_2686F.1_g326940' => 'hma', 'HPP92_006428' => 'vpl', 'HPP92_012069' => 'vpl', 'HPP92_014129' => 'vpl', 'HPP92_014133' => 'vpl', 'HPP92_017315' => 'vpl', 'HPP92_026445' => 'vpl', 'HPP92_026446' => 'vpl', 'Hund00774' => 'sun', 'Hund07682' => 'sun', 'Hund21413' => 'sun', 'Hund23462' => 'sun', 'Hund23463' => 'sun', 'Lalb_Chr03g0027911' => 'lal', 'Lalb_Chr13g0304271' => 'lal', 'Lalb_Chr19g0137471' => 'lal', 'Lalb_Chr22g0350651' => 'lal', 'Lalb_Chr24g0395151' => 'lal', 'Lj1A1231T40' => 'lonja', 'Lj1A221T48' => 'lonja', 'Lj1C924T12' => 'lonja', 'Lj2C993G6' => 'lonja', 'Lj3g0005790' => 'lja', 'Lj3g0015432' => 'lja', 'Lj3g0017722' => 'lja', 'Lj3g0018497' => 'lja', 'Lj4g0025071' => 'lja', 'Lsat_1_v5_gn_1_129680' => 'lsa', 'Lsat_1_v5_gn_2_25321' => 'lsa', 'Lsat_1_v5_gn_2_95461' => 'lsa', 'Lsat_1_v5_gn_4_159620' => 'lsa', 'Lsat_1_v5_gn_6_41301' => 'lsa', 'Lsat_1_v5_gn_6_74660' => 'lsa', 'Lsat_1_v5_gn_7_11520' => 'lsa', 'Lsat_1_v5_gn_9_67680' => 'lsa', 'Manes.04G008300' => 'mes', 'Manes.04G008400' => 'mes', 'Manes.04G026500' => 'mes', 'Manes.10G135300' => 'mes', 'Manes.11G157300' => 'mes', 'Manes.12G074000' => 'mes', 'Manes.16G006200' => 'mes', 'Manes.17G026400' => 'mes', 'Mapoly0024s0086' => 'mpo', 'Mapoly0024s0087' => 'mpo', 'Mapoly0071s0057' => 'mpo', 'Mapoly0204s0012' => 'mpo', 'MBI04_g37681_MAGBIO' => 'mbi', 'MBI05_g17779_MAGBIO' => 'mbi', 'MBI12_g31184_MAGBIO' => 'mbi', 'MBI17_g11083_MAGBIO' => 'mbi', 'MBI18_g03883_MAGBIO' => 'mbi', 'MBI18_g28940_MAGBIO' => 'mbi', 'MCO01G690' => 'mco', 'MD03G1109900' => 'mdo', 'MD03G1134800' => 'mdo', 'MD05G1348000' => 'mdo', 'MD10G1322400' => 'mdo', 'MD11G1123300' => 'mdo', 'MD11G1157600' => 'mdo', 'Medtr2g084875' => 'mtr', 'Medtr2g088130' => 'mtr', 'Medtr4g055310' => 'mtr', 'Medtr4g061070' => 'mtr', 'Medtr4g132250' => 'mtr', 'MELO3C004795.2' => 'cme', 'MELO3C004797.2' => 'cme', 'MELO3C007396.2' => 'cme', 'MELO3C019277.2' => 'cme', 'MELO3C021449.2' => 'cme', 'MELO3C025736.2' => 'cme', 'Migut.D02175' => 'egut', 'Migut.H01573' => 'egut', 'Migut.M01327' => 'egut', 'Migut.N02513' => 'egut', 'MSTRG.14638' => 'ama', 'MSTRG.18632' => 'ama', 'MSTRG.7203' => 'ama', 'Nitab4.5_0000533g0140' => 'nta', 'Nitab4.5_0000888g0150' => 'nta', 'Nitab4.5_0001453g0040' => 'nta', 'Nitab4.5_0002827g0090' => 'nta', 'Nitab4.5_0003082g0040' => 'nta', 'Nitab4.5_0007799g0040' => 'nta', 'Nitab4.5_0008983g0010' => 'nta', 'Nitab4.5_0009017g0020' => 'nta', 'Nn1g02132' => 'nnu', 'Nn1g03492' => 'nnu', 'Nn1g03493' => 'nnu', 'Nn1g03494' => 'nnu', 'Nn1g07164' => 'nnu', 'Nn1g07291' => 'nnu', 'Nn2g10655' => 'nnu', 'Nn2g11652' => 'nnu', 'Nn2g14008' => 'nnu', 'Nn3g17476' => 'nnu', 'Nn3g17477' => 'nnu', 'Nn4g22370' => 'nnu', 'Nn4g25255' => 'nnu', 'Nn5g27755' => 'nnu', 'Nn6g34260' => 'nnu', 'Nn6g35041' => 'nnu', 'Oeu005924.1' => 'oeu', 'Oeu008383.1' => 'oeu', 'Oeu014928.1' => 'oeu', 'Oeu019889.1' => 'oeu', 'Oeu022271.1' => 'oeu', 'Oeu025271.1' => 'oeu', 'Oeu036302.1' => 'oeu', 'Oeu044100.1' => 'oeu', 'Os01g0528300' => 'osa', 'Os03g0286200' => 'osa', 'Os04g0406600' => 'osa', 'Os07g0512000' => 'osa', 'Os07g0694600' => 'osa', 'Os08g0411000' => 'osa', 'Os09g0565700' => 'osa', 'Os09g0566050' => 'osa', 'Os10g0523700' => 'osa', 'Peaxi162Scf00002g00514' => 'pax', 'Peaxi162Scf00047g01817' => 'pax', 'Peaxi162Scf00114g00001' => 'pax', 'Peaxi162Scf00147g00613' => 'pax', 'Peaxi162Scf00389g00425' => 'pax', 'PGR042G1139' => 'pgr', 'PGR042G3273' => 'pgr', 'PGR102G2180' => 'pgr', 'PGR119G0234' => 'pgr', 'PGR119G0668' => 'pgr', 'PGSC0003DMG400007122' => 'stu', 'PGSC0003DMG400016478' => 'stu', 'PGSC0003DMG400025374' => 'stu', 'PGSC0003DMG400026536' => 'stu', 'Phvul.003G079600' => 'pvu', 'Phvul.005G115600' => 'pvu', 'Phvul.005G127100' => 'pvu', 'Phvul.006G149500' => 'pvu', 'Phvul.006G149600' => 'pvu', 'Phvul.011G071800' => 'pvu', 'Phvul.011G090400' => 'pvu', 'Potri.004G013400' => 'ptr', 'Potri.004G188100' => 'ptr', 'Potri.008G195500' => 'ptr', 'Potri.009G148800' => 'ptr', 'Potri.011G004700' => 'ptr', 'Pp3c17_22810' => 'ppa', 'Pp3c18_4480' => 'ppa', 'Pp3c19_13030' => 'ppa', 'Pp3c1_33620' => 'ppa', 'Pp3c2_9380' => 'ppa', 'PRCOL_00001023' => 'pco', 'Prupe.3G216300' => 'ppe', 'Prupe.4G019500' => 'ppe', 'Prupe.6G092500' => 'ppe', 'Prupe.6G119200' => 'ppe', 'Psat0s1945g0080' => 'psa', 'Psat0s4167g0040' => 'psa', 'Psat1g185800' => 'psa', 'Psat4g006440' => 'psa', 'Psat4g006480' => 'psa', 'Psat4g168120' => 'psa', 'Psat5g255680' => 'psa', 'Psat5g261760' => 'psa', 'Psat7g222120' => 'psa', 'PSO063G7252' => 'pso', 'PSO170G4778' => 'pso', 'PSO210G2249' => 'pso', 'PSO339G2411' => 'pso', 'PSO339G2457' => 'pso', 'PSO339G2854' => 'pso', 'PSO339G4288' => 'pso', 'PSO339G4615' => 'pso', 'PSO384G2796' => 'pso', 'PSO384G2940' => 'pso', 'PSO384G4227' => 'pso', 'PSO478G1425' => 'pso', 'PSO541G3863' => 'pso', 'PSO675G0507' => 'pso', 'PSO782G0338' => 'pso', 'PSO832G0644' => 'pso', 'QL01p013664' => 'qlo', 'QL01p036598' => 'qlo', 'QL05p072984' => 'qlo', 'QL08p005768' => 'qlo', 'QL08p032743' => 'qlo', 'QL93p0073_0439' => 'qlo', 'QL93p0073_0444' => 'qlo', 'RcHm_v2.0_Chr5g0002851' => 'rch', 'RcHm_v2.0_Chr5g0055201' => 'rch', 'RcHm_v2.0_Chr5g0061191' => 'rch', 'RcHm_v2.0_Chr7g0203231' => 'rch', 'Rhsim01G0208100' => 'rsi', 'Rhsim01G0208200' => 'rsi', 'Rhsim02G0106500' => 'rsi', 'Rhsim03G0107900' => 'rsi', 'Rhsim06G0163400' => 'rsi', 'Rhsim13G0105200' => 'rsi', 'Sabra04G0006300' => 'sbr', 'Sabra04G0127000' => 'sbr', 'Sabra08G0148700' => 'sbr', 'Sabra09G0117400' => 'sbr', 'SalBow1G3326' => 'sbo', 'SalBow3G3228' => 'sbo', 'SalBow6G1634' => 'sbo', 'SalBow6G3603' => 'sbo', 'SalBow6G5266' => 'sbo', 'SalBow7G2265' => 'sbo', 'SalBow8G0850' => 'sbo', 'SalBow8G2592' => 'sbo', 'Sc05g0009240' => 'sci', 'Sc12g0002300' => 'sci', 'Sc21g0000100' => 'sci', 'Sc21g0004720' => 'sci', 'Sed0002949' => 'sed', 'Sed0004114' => 'sed', 'Sed0004306' => 'sed', 'Sed0006172' => 'sed', 'Sed0008413' => 'sed', 'Sed0013809' => 'sed', 'Sed0019556' => 'sed', 'SEGI_03570' => 'sgi', 'SEGI_07859' => 'sgi', 'SEGI_15042' => 'sgi', 'SEGI_16263' => 'sgi', 'SEGI_16552' => 'sgi', 'SEGI_24331' => 'sgi', 'SEGI_27316' => 'sgi', 'SEGI_29521' => 'sgi', 'SEGI_41342' => 'sgi', 'SGA_v2.0_scaffold27G11617' => 'sas', 'SGA_v2.0_scaffold316G48428' => 'sas', 'SGA_v2.0_scaffold49G18261' => 'sas', 'SGA_v2.0_scaffold7G03831' => 'sas', 'SGA_v2.0_scaffold93G28359' => 'sas', 'SHI02210' => 'shi', 'SHI06028' => 'shi', 'SHI06321' => 'shi', 'SMO111G0012' => 'smo', 'SMO228G0080' => 'smo', 'SMO356G0756' => 'smo', 'Solyc02g080620.3' => 'sly', 'Solyc06g074530.1' => 'sly', 'Solyc11g066890.1' => 'sly', 'Solyc11g072520.3' => 'sly', 'Sopen02g025330' => 'spe', 'Sopen06g031000' => 'spe', 'Sopen09g008240' => 'spe', 'Sopen09g025210' => 'spe', 'Sopen11g026600' => 'spe', 'Sopen11g030170' => 'spe', 'Sp1g10420' => 'spa', 'Sp3g06570' => 'spa', 'Sp4g10660' => 'spa', 'Sp5g16460' => 'spa', 'Sp6g22710' => 'spa', 'TAR365G0112' => 'tar', 'TAR369G0717' => 'tar', 'TAR374G0976' => 'tar', 'TAR623G1128' => 'tar', 'TAR626G1937' => 'tar', 'TAR627G0123' => 'tar', 'TAR628G0305' => 'tar', 'TAR636G1176' => 'tar', 'TAR636G2442' => 'tar', 'THA.LOC104800556' => 'tha', 'THA.LOC104809501' => 'tha', 'THA.LOC104815126' => 'tha', 'THA.LOC104815732' => 'tha', 'THA.LOC104823528' => 'tha', 'Thecc.02G365600' => 'tca', 'Thecc.06G222300' => 'tca', 'Thecc.09G261800' => 'tca', 'Thecc.09G291400' => 'tca', 'Thhalv10003028m.g' => 'esa', 'Thhalv10007886m.g' => 'esa', 'Thhalv10016085m.g' => 'esa', 'Thhalv10016681m.g' => 'esa', 'Thhalv10020951m.g' => 'esa', 'TPR.G15598' => 'tpr', 'TPR.G29305' => 'tpr', 'TPR.G32395' => 'tpr', 'TPR.G36998' => 'tpr', 'TPR.G4227' => 'tpr', 'TWI18G1433' => 'twi', 'TWI31G0755' => 'twi', 'TWI38G0912' => 'twi', 'TWI75G1097' => 'twi', 'TWI75G1619' => 'twi', 'TWI79G1336' => 'twi', 'unitig_0.g943' => 'ugi', 'unitig_0.g944' => 'ugi', 'unitig_22.g6646' => 'ugi', 'unitig_37.g12681' => 'ugi', 'unitig_8.g3290' => 'ugi', 'vmacro03278' => 'vma', 'vmacro12197' => 'vma', 'vmacro14478' => 'vma', 'vmacro15787' => 'vma', 'vmacro15789' => 'vma', 'vmacro15790' => 'vma', 'vmacro15806' => 'vma', 'vmacro22907' => 'vma', 'vmacro22908' => 'vma', 'vmacro22909' => 'vma', 'vmacro23108' => 'vma', 'VMungo0540G0540' => 'vmu', 'VMungo0540G2468' => 'vmu', 'VMungo1080G0390' => 'vmu', 'VMungo1080G1165' => 'vmu', 'VMungo1127G0170' => 'vmu', 'VMungo1127G2099' => 'vmu', 'VMungo1215G3013' => 'vmu', 'Zm00001eb013110' => 'zma', 'Zm00001eb084260' => 'zma', 'Zm00001eb096110' => 'zma', 'Zm00001eb217510' => 'zma', 'Zm00001eb322550' => 'zma', 'Zm00001eb390770' => 'zma', 'Zm00001eb397170' => 'zma', 'Zm00001eb404610' => 'zma', 'Zm00001eb421790' => 'zma' ), 'gf_id' => 'HOM05D000911', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000911' ), 'data_identifier' => 'HOM05D000911', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000911', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27780' => 'bna', 'A03p35380' => 'bna', 'A04p21160' => 'bna', 'A05p40570' => 'bna', 'A06p26900' => 'bna', 'A08p33230' => 'bna', 'A09p65960' => 'bna', 'A10p18290' => 'bna', 'Aa31LG1G12990' => 'aar', 'Aa31LG1G2980' => 'aar', 'Aa31LG4G14320' => 'aar', 'Aa31LG7G11800' => 'aar', 'Aa31sc36G50' => 'aar', 'Aa31sc36G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3721' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5459' => 'aag', 'Actinidia03028' => 'ach', 'Actinidia03753' => 'ach', 'Actinidia04187' => 'ach', 'Actinidia05509' => 'ach', 'Actinidia24180' => 'ach', 'Actinidia26906' => 'ach', 'Actinidia37097' => 'ach', 'Actinidia38249' => 'ach', 'Ah.01g003470' => 'amhyb', 'Ah.01g004580' => 'amhyb', 'Ah.01g014850' => 'amhyb', 'Ah.01g016830' => 'amhyb', 'Ah.14g088000' => 'amhyb', 'AL1G22980' => 'aly', 'AL3G18990' => 'aly', 'AL4G22440' => 'aly', 'AL4G33180' => 'aly', 'AL5G22920' => 'aly', 'AL6G33660' => 'aly', 'AL8G20720' => 'aly', 'Aqoxy1G00935' => 'aox', 'Aqoxy1G02094' => 'aox', 'Aqoxy2G01239' => 'aox', 'Aqoxy4G01870' => 'aox', 'Aqoxy7G00450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.36ZVTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71EM27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5D6C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH3WRE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3NCM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RIM768' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YB5YRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z36GDV' => 'arhy', 'AT1G08250' => 'ath', 'AT1G11790' => 'ath', 'AT2G27820' => 'ath', 'AT3G07630' => 'ath', 'AT3G44720' => 'ath', 'AT5G22630' => 'ath', 'ATR0693G304' => 'atr', 'ATR0794G109' => 'atr', 'ATR0820G120' => 'atr', 'ATR1159G064' => 'atr', 'Atru.chr10.2239' => 'acertr', 'Atru.chr3.3371' => 'acertr', 'Atru.chr6.3202' => 'acertr', 'AUR62006499' => 'cqu', 'AUR62012718' => 'cqu', 'AUR62021938' => 'cqu', 'AUR62023932' => 'cqu', 'AUR62025034' => 'cqu', 'AUR62025035' => 'cqu', 'AUR62038307' => 'cqu', 'AUR62043466' => 'cqu', 'BcaB02g10748' => 'bca', 'BcaB03g13231' => 'bca', 'BcaB03g14689' => 'bca', 'BcaB05g22716' => 'bca', 'BcaB06g28172' => 'bca', 'BcaB08g36413' => 'bca', 'BcaC01g02186' => 'bca', 'BcaC01g04272' => 'bca', 'BcaC02g08080' => 'bca', 'BcaC02g08227' => 'bca', 'BcaC03g13901' => 'bca', 'BcaC04g19593' => 'bca', 'BcaC04g20874' => 'bca', 'BcaC05g29557' => 'bca', 'BcaC06g35505' => 'bca', 'BcaC07g41954' => 'bca', 'BcaC07g41955' => 'bca', 'BcaC07g41956' => 'bca', 'BcaC07g42519' => 'bca', 'BcaC07g42520' => 'bca', 'BcaC07g42523' => 'bca', 'BcaC07g42524' => 'bca', 'BcaC07g42525' => 'bca', 'BcaC08g47480' => 'bca', 'BcaC08g47481' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00530' => 'bna', 'BolC2t07178H' => 'bol', 'BolC3t16567H' => 'bol', 'BolC4t27234H' => 'bol', 'BolC5t29728H' => 'bol', 'BolC5t34622H' => 'bol', 'BolC6t40321H' => 'bol', 'BolC7t42028H' => 'bol', 'BolC8t49125H' => 'bol', 'BolC8t52538H' => 'bol', 'BolC8t52539H' => 'bol', 'BolC9t56681H' => 'bol', 'BolC9t58266H' => 'bol', 'BolSC21t60294H' => 'bol', 'BraA02t05670Z' => 'bra', 'BraA03t12716Z' => 'bra', 'BraA04t17685Z' => 'bra', 'BraA05t22788Z' => 'bra', 'BraA06t24032Z' => 'bra', 'BraA06t25625Z' => 'bra', 'BraA07t27930Z' => 'bra', 'BraA08t35242Z' => 'bra', 'BraA09t38609Z' => 'bra', 'BraA10t43905Z' => 'bra', 'C02p11060' => 'bna', 'C03p42990' => 'bna', 'C03p67310' => 'bna', 'C04p56990' => 'bna', 'C04p58660' => 'bna', 'C05p09890' => 'bna', 'C05p59680' => 'bna', 'C06p19830' => 'bna', 'C06p53040' => 'bna', 'C07p15230' => 'bna', 'C08p50070' => 'bna', 'C08p50090' => 'bna', 'C09p38330' => 'bna', 'C09p53940' => 'bna', 'CAN.G1014.1' => 'can', 'CAN.G644.30' => 'can', 'CAN.G84.47' => 'can', 'CAN.G919.8' => 'can', 'CANSAT54G0113' => 'cansat', 'CANSAT54G1286' => 'cansat', 'CANSAT64G1020' => 'cansat', 'CARHR008080' => 'chi', 'CARHR008090' => 'chi', 'CARHR012130' => 'chi', 'CARHR038390' => 'chi', 'CARHR082330' => 'chi', 'CARHR120520' => 'chi', 'CARHR151470' => 'chi', 'CARHR190950' => 'chi', 'Carub.0001s0760' => 'cru', 'Carub.0001s1146' => 'cru', 'Carub.0003s0721' => 'cru', 'Carub.0004s0858' => 'cru', 'Carub.0005s1040' => 'cru', 'Carub.0006s2035' => 'cru', 'Carub.0015s0005' => 'cru', 'Ca_01607_v3' => 'car', 'Ca_01677_v3' => 'car', 'Ca_06087_v3' => 'car', 'Ca_19238_v3' => 'car', 'Ca_19373_v3' => 'car', 'Ca_21079_v3' => 'car', 'CBR_g54016' => 'cbr', 'CBR_g54018' => 'cbr', 'CBR_g54020' => 'cbr', 'Cc01_g09780' => 'ccan', 'Cc01_g11680' => 'ccan', 'Cc02_g15610' => 'ccan', 'Cc05_g04350' => 'ccan', 'Cc09_g01580' => 'ccan', 'CDE01G0795' => 'cde', 'CDE02G2024' => 'cde', 'CDE02G2260' => 'cde', 'CDE02G4561' => 'cde', 'CDE05G2733' => 'cde', 'CDE05G3422' => 'cde', 'CDE06G2003' => 'cde', 'CDE08G0576' => 'cde', 'CDE09G0048' => 'cde', 'CDE11G0805' => 'cde', 'Cfa003644' => 'cfa', 'Cfa006290' => 'cfa', 'Cfa010080' => 'cfa', 'Cfa011376' => 'cfa', 'Cfa011576' => 'cfa', 'Cfa011577' => 'cfa', 'Cfa014389' => 'cfa', 'Ciclev10006044m.g' => 'ccl', 'Ciclev10006954m.g' => 'ccl', 'Ciclev10015131m.g' => 'ccl', 'Ciclev10015580m.g' => 'ccl', 'Ciclev10028359m.g' => 'ccl', 'Ciclev10028573m.g' => 'ccl', 'CiPaw.03G159300' => 'cil', 'CiPaw.04G115100' => 'cil', 'CiPaw.09G092800' => 'cil', 'CiPaw.10G071800' => 'cil', 'CiPaw.13G105800' => 'cil', 'CiPaw.13G141000' => 'cil', 'CiPaw.14G103400' => 'cil', 'ClCG01G012700' => 'cla', 'ClCG01G012720' => 'cla', 'ClCG01G021920' => 'cla', 'ClCG02G008870' => 'cla', 'ClCG02G020840' => 'cla', 'ClCG02G021930' => 'cla', 'COL.COLO4_19302' => 'col', 'COL.COLO4_25262' => 'col', 'COL.COLO4_31788' => 'col', 'Cpa.g.c34684' => 'cpa', 'Cpa.g.c36520.1' => 'cpa', 'Cpa.g.c45626' => 'cpa', 'Cpa.g.sc121.17' => 'cpa', 'Cpa.g.sc13.22' => 'cpa', 'Cpa.g.sc87.88' => 'cpa', 'Cre06.g261800' => 'cre', 'CsaV3_1G014500' => 'csa', 'CsaV3_1G014510' => 'csa', 'CsaV3_2G034880' => 'csa', 'CsaV3_6G014760' => 'csa', 'CsaV3_6G021500' => 'csa', 'CsaV3_6G048980' => 'csa', 'CSS0002511' => 'camsi', 'CSS0007556' => 'camsi', 'CSS0008532' => 'camsi', 'CSS0009709' => 'camsi', 'CSS0010486' => 'camsi', 'CSS0016768' => 'camsi', 'CSS0023512' => 'camsi', 'CSS0025341' => 'camsi', 'CSS0027999' => 'camsi', 'CSS0028944' => 'camsi', 'CSS0032292' => 'camsi', 'CSS0032464' => 'camsi', 'CSS0037153' => 'camsi', 'CSS0039256' => 'camsi', 'CSS0048392' => 'camsi', 'CSS0050458' => 'camsi', 'DCAR_004224' => 'dca', 'DCAR_006147' => 'dca', 'DCAR_006465' => 'dca', 'DCAR_008159' => 'dca', 'DCAR_012164' => 'dca', 'DCAR_019764' => 'dca', 'Dinv05418' => 'din', 'Dinv10839' => 'din', 'Dinv12521' => 'din', 'Dinv13900' => 'din', 'Dinv29426' => 'din', 'Duzib150G0263' => 'dzi', 'Duzib168G1178' => 'dzi', 'Duzib168G1924' => 'dzi', 'Duzib170G0299' => 'dzi', 'Duzib170G0813' => 'dzi', 'Duzib235G1128' => 'dzi', 'Duzib248G1060' => 'dzi', 'ECA232G1910' => 'eca', 'ECA233G4621' => 'eca', 'ECA238G1216' => 'eca', 'ECA238G1784' => 'eca', 'ECA248G1242' => 'eca', 'EL10Ac8g20071' => 'bvu', 'EL10Ac9g21086' => 'bvu', 'EL10Ac9g22407' => 'bvu', 'EL10Ac9g22412' => 'bvu', 'Eucgr.A01119' => 'egr', 'Eucgr.E04043' => 'egr', 'Eucgr.J00428' => 'egr', 'Eucgr.J00958' => 'egr', 'FAN11G3091' => 'fan', 'FAN11G3651' => 'fan', 'FAN16G2566' => 'fan', 'FAN21G3155' => 'fan', 'FAN21G3400' => 'fan', 'FAN21G3543' => 'fan', 'FAN25G0234' => 'fan', 'FAN25G1422' => 'fan', 'FAN25G3392' => 'fan', 'FvH4_3g01940' => 'fve', 'FvH4_3g29870' => 'fve', 'FvH4_3g33680' => 'fve', 'Glyma.09G004200' => 'gma', 'Glyma.11G151288' => 'gma', 'Glyma.11G189100' => 'gma', 'Glyma.12G072500' => 'gma', 'Glyma.12G085500' => 'gma', 'Glyma.12G181800' => 'gma', 'Glyma.12G193000' => 'gma', 'Glyma.13G309300' => 'gma', 'Glyma.13G319000' => 'gma', 'Glyma.17G012600' => 'gma', 'Gohir.A06G148600' => 'ghi', 'Gohir.A07G115800' => 'ghi', 'Gohir.A08G003600' => 'ghi', 'Gohir.A09G093300' => 'ghi', 'Gohir.A09G105400' => 'ghi', 'Gohir.A09G105500' => 'ghi', 'Gohir.D06G154600' => 'ghi', 'Gohir.D07G120200' => 'ghi', 'Gohir.D08G013900' => 'ghi', 'Gohir.D09G093100' => 'ghi', 'Gohir.D09G102200' => 'ghi', 'Gohir.D09G102300' => 'ghi', 'Gorai.001G129400' => 'gra', 'Gorai.004G008200' => 'gra', 'Gorai.006G109800' => 'gra', 'Gorai.006G119500' => 'gra', 'Gorai.006G121300' => 'gra', 'Gorai.010G180700' => 'gra', 'GSVIVG01012716001' => 'vvi', 'GSVIVG01025118001' => 'vvi', 'GSVIVG01030439001' => 'vvi', 'GSVIVG01031397001' => 'vvi', 'HanXRQChr01g0004201' => 'han', 'HanXRQChr02g0054941' => 'han', 'HanXRQChr05g0141811' => 'han', 'HanXRQChr07g0197751' => 'han', 'HanXRQChr11g0346691' => 'han', 'HanXRQChr13g0396971' => 'han', 'HanXRQChr14g0432951' => 'han', 'HanXRQChr14g0452001' => 'han', 'HanXRQChr15g0496681' => 'han', 'HanXRQChr17g0557491' => 'han', 'HanXRQChr17g0557501' => 'han', 'Haze_06809' => 'cav', 'Haze_12852' => 'cav', 'Haze_15850' => 'cav', 'Haze_23446' => 'cav', 'Haze_23942' => 'cav', 'Haze_23943' => 'cav', 'Hma1.2p1_0091F.1_g046450' => 'hma', 'Hma1.2p1_0128F.1_g059910' => 'hma', 'Hma1.2p1_0249F.1_g102260' => 'hma', 'Hma1.2p1_0453F.1_g156190' => 'hma', 'Hma1.2p1_0695F.1_g204380' => 'hma', 'Hma1.2p1_0749F.1_g212650' => 'hma', 'Hma1.2p1_2156F.1_g315420' => 'hma', 'Hma1.2p1_2686F.1_g326940' => 'hma', 'HPP92_006428' => 'vpl', 'HPP92_012069' => 'vpl', 'HPP92_014129' => 'vpl', 'HPP92_014133' => 'vpl', 'HPP92_017315' => 'vpl', 'HPP92_026445' => 'vpl', 'HPP92_026446' => 'vpl', 'Hund00774' => 'sun', 'Hund07682' => 'sun', 'Hund21413' => 'sun', 'Hund23462' => 'sun', 'Hund23463' => 'sun', 'Lalb_Chr03g0027911' => 'lal', 'Lalb_Chr13g0304271' => 'lal', 'Lalb_Chr19g0137471' => 'lal', 'Lalb_Chr22g0350651' => 'lal', 'Lalb_Chr24g0395151' => 'lal', 'Lj1A1231T40' => 'lonja', 'Lj1A221T48' => 'lonja', 'Lj1C924T12' => 'lonja', 'Lj2C993G6' => 'lonja', 'Lj3g0005790' => 'lja', 'Lj3g0015432' => 'lja', 'Lj3g0017722' => 'lja', 'Lj3g0018497' => 'lja', 'Lj4g0025071' => 'lja', 'Lsat_1_v5_gn_1_129680' => 'lsa', 'Lsat_1_v5_gn_2_25321' => 'lsa', 'Lsat_1_v5_gn_2_95461' => 'lsa', 'Lsat_1_v5_gn_4_159620' => 'lsa', 'Lsat_1_v5_gn_6_41301' => 'lsa', 'Lsat_1_v5_gn_6_74660' => 'lsa', 'Lsat_1_v5_gn_7_11520' => 'lsa', 'Lsat_1_v5_gn_9_67680' => 'lsa', 'Manes.04G008300' => 'mes', 'Manes.04G008400' => 'mes', 'Manes.04G026500' => 'mes', 'Manes.10G135300' => 'mes', 'Manes.11G157300' => 'mes', 'Manes.12G074000' => 'mes', 'Manes.16G006200' => 'mes', 'Manes.17G026400' => 'mes', 'Mapoly0024s0086' => 'mpo', 'Mapoly0024s0087' => 'mpo', 'Mapoly0071s0057' => 'mpo', 'Mapoly0204s0012' => 'mpo', 'MBI04_g37681_MAGBIO' => 'mbi', 'MBI05_g17779_MAGBIO' => 'mbi', 'MBI12_g31184_MAGBIO' => 'mbi', 'MBI17_g11083_MAGBIO' => 'mbi', 'MBI18_g03883_MAGBIO' => 'mbi', 'MBI18_g28940_MAGBIO' => 'mbi', 'MCO01G690' => 'mco', 'MD03G1109900' => 'mdo', 'MD03G1134800' => 'mdo', 'MD05G1348000' => 'mdo', 'MD10G1322400' => 'mdo', 'MD11G1123300' => 'mdo', 'MD11G1157600' => 'mdo', 'Medtr2g084875' => 'mtr', 'Medtr2g088130' => 'mtr', 'Medtr4g055310' => 'mtr', 'Medtr4g061070' => 'mtr', 'Medtr4g132250' => 'mtr', 'MELO3C004795.2' => 'cme', 'MELO3C004797.2' => 'cme', 'MELO3C007396.2' => 'cme', 'MELO3C019277.2' => 'cme', 'MELO3C021449.2' => 'cme', 'MELO3C025736.2' => 'cme', 'Migut.D02175' => 'egut', 'Migut.H01573' => 'egut', 'Migut.M01327' => 'egut', 'Migut.N02513' => 'egut', 'MSTRG.14638' => 'ama', 'MSTRG.18632' => 'ama', 'MSTRG.7203' => 'ama', 'Nitab4.5_0000533g0140' => 'nta', 'Nitab4.5_0000888g0150' => 'nta', 'Nitab4.5_0001453g0040' => 'nta', 'Nitab4.5_0002827g0090' => 'nta', 'Nitab4.5_0003082g0040' => 'nta', 'Nitab4.5_0007799g0040' => 'nta', 'Nitab4.5_0008983g0010' => 'nta', 'Nitab4.5_0009017g0020' => 'nta', 'Nn1g02132' => 'nnu', 'Nn1g03492' => 'nnu', 'Nn1g03493' => 'nnu', 'Nn1g03494' => 'nnu', 'Nn1g07164' => 'nnu', 'Nn1g07291' => 'nnu', 'Nn2g10655' => 'nnu', 'Nn2g11652' => 'nnu', 'Nn2g14008' => 'nnu', 'Nn3g17476' => 'nnu', 'Nn3g17477' => 'nnu', 'Nn4g22370' => 'nnu', 'Nn4g25255' => 'nnu', 'Nn5g27755' => 'nnu', 'Nn6g34260' => 'nnu', 'Nn6g35041' => 'nnu', 'Oeu005924.1' => 'oeu', 'Oeu008383.1' => 'oeu', 'Oeu014928.1' => 'oeu', 'Oeu019889.1' => 'oeu', 'Oeu022271.1' => 'oeu', 'Oeu025271.1' => 'oeu', 'Oeu036302.1' => 'oeu', 'Oeu044100.1' => 'oeu', 'Os01g0528300' => 'osa', 'Os03g0286200' => 'osa', 'Os04g0406600' => 'osa', 'Os07g0512000' => 'osa', 'Os07g0694600' => 'osa', 'Os08g0411000' => 'osa', 'Os09g0565700' => 'osa', 'Os09g0566050' => 'osa', 'Os10g0523700' => 'osa', 'Peaxi162Scf00002g00514' => 'pax', 'Peaxi162Scf00047g01817' => 'pax', 'Peaxi162Scf00114g00001' => 'pax', 'Peaxi162Scf00147g00613' => 'pax', 'Peaxi162Scf00389g00425' => 'pax', 'PGR042G1139' => 'pgr', 'PGR042G3273' => 'pgr', 'PGR102G2180' => 'pgr', 'PGR119G0234' => 'pgr', 'PGR119G0668' => 'pgr', 'PGSC0003DMG400007122' => 'stu', 'PGSC0003DMG400016478' => 'stu', 'PGSC0003DMG400025374' => 'stu', 'PGSC0003DMG400026536' => 'stu', 'Phvul.003G079600' => 'pvu', 'Phvul.005G115600' => 'pvu', 'Phvul.005G127100' => 'pvu', 'Phvul.006G149500' => 'pvu', 'Phvul.006G149600' => 'pvu', 'Phvul.011G071800' => 'pvu', 'Phvul.011G090400' => 'pvu', 'Potri.004G013400' => 'ptr', 'Potri.004G188100' => 'ptr', 'Potri.008G195500' => 'ptr', 'Potri.009G148800' => 'ptr', 'Potri.011G004700' => 'ptr', 'Pp3c17_22810' => 'ppa', 'Pp3c18_4480' => 'ppa', 'Pp3c19_13030' => 'ppa', 'Pp3c1_33620' => 'ppa', 'Pp3c2_9380' => 'ppa', 'PRCOL_00001023' => 'pco', 'Prupe.3G216300' => 'ppe', 'Prupe.4G019500' => 'ppe', 'Prupe.6G092500' => 'ppe', 'Prupe.6G119200' => 'ppe', 'Psat0s1945g0080' => 'psa', 'Psat0s4167g0040' => 'psa', 'Psat1g185800' => 'psa', 'Psat4g006440' => 'psa', 'Psat4g006480' => 'psa', 'Psat4g168120' => 'psa', 'Psat5g255680' => 'psa', 'Psat5g261760' => 'psa', 'Psat7g222120' => 'psa', 'PSO063G7252' => 'pso', 'PSO170G4778' => 'pso', 'PSO210G2249' => 'pso', 'PSO339G2411' => 'pso', 'PSO339G2457' => 'pso', 'PSO339G2854' => 'pso', 'PSO339G4288' => 'pso', 'PSO339G4615' => 'pso', 'PSO384G2796' => 'pso', 'PSO384G2940' => 'pso', 'PSO384G4227' => 'pso', 'PSO478G1425' => 'pso', 'PSO541G3863' => 'pso', 'PSO675G0507' => 'pso', 'PSO782G0338' => 'pso', 'PSO832G0644' => 'pso', 'QL01p013664' => 'qlo', 'QL01p036598' => 'qlo', 'QL05p072984' => 'qlo', 'QL08p005768' => 'qlo', 'QL08p032743' => 'qlo', 'QL93p0073_0439' => 'qlo', 'QL93p0073_0444' => 'qlo', 'RcHm_v2.0_Chr5g0002851' => 'rch', 'RcHm_v2.0_Chr5g0055201' => 'rch', 'RcHm_v2.0_Chr5g0061191' => 'rch', 'RcHm_v2.0_Chr7g0203231' => 'rch', 'Rhsim01G0208100' => 'rsi', 'Rhsim01G0208200' => 'rsi', 'Rhsim02G0106500' => 'rsi', 'Rhsim03G0107900' => 'rsi', 'Rhsim06G0163400' => 'rsi', 'Rhsim13G0105200' => 'rsi', 'Sabra04G0006300' => 'sbr', 'Sabra04G0127000' => 'sbr', 'Sabra08G0148700' => 'sbr', 'Sabra09G0117400' => 'sbr', 'SalBow1G3326' => 'sbo', 'SalBow3G3228' => 'sbo', 'SalBow6G1634' => 'sbo', 'SalBow6G3603' => 'sbo', 'SalBow6G5266' => 'sbo', 'SalBow7G2265' => 'sbo', 'SalBow8G0850' => 'sbo', 'SalBow8G2592' => 'sbo', 'Sc05g0009240' => 'sci', 'Sc12g0002300' => 'sci', 'Sc21g0000100' => 'sci', 'Sc21g0004720' => 'sci', 'Sed0002949' => 'sed', 'Sed0004114' => 'sed', 'Sed0004306' => 'sed', 'Sed0006172' => 'sed', 'Sed0008413' => 'sed', 'Sed0013809' => 'sed', 'Sed0019556' => 'sed', 'SEGI_03570' => 'sgi', 'SEGI_07859' => 'sgi', 'SEGI_15042' => 'sgi', 'SEGI_16263' => 'sgi', 'SEGI_16552' => 'sgi', 'SEGI_24331' => 'sgi', 'SEGI_27316' => 'sgi', 'SEGI_29521' => 'sgi', 'SEGI_41342' => 'sgi', 'SGA_v2.0_scaffold27G11617' => 'sas', 'SGA_v2.0_scaffold316G48428' => 'sas', 'SGA_v2.0_scaffold49G18261' => 'sas', 'SGA_v2.0_scaffold7G03831' => 'sas', 'SGA_v2.0_scaffold93G28359' => 'sas', 'SHI02210' => 'shi', 'SHI06028' => 'shi', 'SHI06321' => 'shi', 'SMO111G0012' => 'smo', 'SMO228G0080' => 'smo', 'SMO356G0756' => 'smo', 'Solyc02g080620.3' => 'sly', 'Solyc06g074530.1' => 'sly', 'Solyc11g066890.1' => 'sly', 'Solyc11g072520.3' => 'sly', 'Sopen02g025330' => 'spe', 'Sopen06g031000' => 'spe', 'Sopen09g008240' => 'spe', 'Sopen09g025210' => 'spe', 'Sopen11g026600' => 'spe', 'Sopen11g030170' => 'spe', 'Sp1g10420' => 'spa', 'Sp3g06570' => 'spa', 'Sp4g10660' => 'spa', 'Sp5g16460' => 'spa', 'Sp6g22710' => 'spa', 'TAR365G0112' => 'tar', 'TAR369G0717' => 'tar', 'TAR374G0976' => 'tar', 'TAR623G1128' => 'tar', 'TAR626G1937' => 'tar', 'TAR627G0123' => 'tar', 'TAR628G0305' => 'tar', 'TAR636G1176' => 'tar', 'TAR636G2442' => 'tar', 'THA.LOC104800556' => 'tha', 'THA.LOC104809501' => 'tha', 'THA.LOC104815126' => 'tha', 'THA.LOC104815732' => 'tha', 'THA.LOC104823528' => 'tha', 'Thecc.02G365600' => 'tca', 'Thecc.06G222300' => 'tca', 'Thecc.09G261800' => 'tca', 'Thecc.09G291400' => 'tca', 'Thhalv10003028m.g' => 'esa', 'Thhalv10007886m.g' => 'esa', 'Thhalv10016085m.g' => 'esa', 'Thhalv10016681m.g' => 'esa', 'Thhalv10020951m.g' => 'esa', 'TPR.G15598' => 'tpr', 'TPR.G29305' => 'tpr', 'TPR.G32395' => 'tpr', 'TPR.G36998' => 'tpr', 'TPR.G4227' => 'tpr', 'TWI18G1433' => 'twi', 'TWI31G0755' => 'twi', 'TWI38G0912' => 'twi', 'TWI75G1097' => 'twi', 'TWI75G1619' => 'twi', 'TWI79G1336' => 'twi', 'unitig_0.g943' => 'ugi', 'unitig_0.g944' => 'ugi', 'unitig_22.g6646' => 'ugi', 'unitig_37.g12681' => 'ugi', 'unitig_8.g3290' => 'ugi', 'vmacro03278' => 'vma', 'vmacro12197' => 'vma', 'vmacro14478' => 'vma', 'vmacro15787' => 'vma', 'vmacro15789' => 'vma', 'vmacro15790' => 'vma', 'vmacro15806' => 'vma', 'vmacro22907' => 'vma', 'vmacro22908' => 'vma', 'vmacro22909' => 'vma', 'vmacro23108' => 'vma', 'VMungo0540G0540' => 'vmu', 'VMungo0540G2468' => 'vmu', 'VMungo1080G0390' => 'vmu', 'VMungo1080G1165' => 'vmu', 'VMungo1127G0170' => 'vmu', 'VMungo1127G2099' => 'vmu', 'VMungo1215G3013' => 'vmu', 'Zm00001eb013110' => 'zma', 'Zm00001eb084260' => 'zma', 'Zm00001eb096110' => 'zma', 'Zm00001eb217510' => 'zma', 'Zm00001eb322550' => 'zma', 'Zm00001eb390770' => 'zma', 'Zm00001eb397170' => 'zma', 'Zm00001eb404610' => 'zma', 'Zm00001eb421790' => 'zma' ) $gf_id = 'HOM05D000911' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000911' ) $data_identifier = 'HOM05D000911' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 16, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 5, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 6, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 8, 'nnu' => (int) 16, 'oeu' => (int) 8, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 5, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 16, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421790' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000911', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27780' => 'bna', 'A03p35380' => 'bna', 'A04p21160' => 'bna', 'A05p40570' => 'bna', 'A06p26900' => 'bna', 'A08p33230' => 'bna', 'A09p65960' => 'bna', 'A10p18290' => 'bna', 'Aa31LG1G12990' => 'aar', 'Aa31LG1G2980' => 'aar', 'Aa31LG4G14320' => 'aar', 'Aa31LG7G11800' => 'aar', 'Aa31sc36G50' => 'aar', 'Aa31sc36G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3721' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5459' => 'aag', 'Actinidia03028' => 'ach', 'Actinidia03753' => 'ach', 'Actinidia04187' => 'ach', 'Actinidia05509' => 'ach', 'Actinidia24180' => 'ach', 'Actinidia26906' => 'ach', 'Actinidia37097' => 'ach', 'Actinidia38249' => 'ach', 'Ah.01g003470' => 'amhyb', 'Ah.01g004580' => 'amhyb', 'Ah.01g014850' => 'amhyb', 'Ah.01g016830' => 'amhyb', 'Ah.14g088000' => 'amhyb', 'AL1G22980' => 'aly', 'AL3G18990' => 'aly', 'AL4G22440' => 'aly', 'AL4G33180' => 'aly', 'AL5G22920' => 'aly', 'AL6G33660' => 'aly', 'AL8G20720' => 'aly', 'Aqoxy1G00935' => 'aox', 'Aqoxy1G02094' => 'aox', 'Aqoxy2G01239' => 'aox', 'Aqoxy4G01870' => 'aox', 'Aqoxy7G00450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.36ZVTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71EM27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5D6C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH3WRE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3NCM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RIM768' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YB5YRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z36GDV' => 'arhy', 'AT1G08250' => 'ath', 'AT1G11790' => 'ath', 'AT2G27820' => 'ath', 'AT3G07630' => 'ath', 'AT3G44720' => 'ath', 'AT5G22630' => 'ath', 'ATR0693G304' => 'atr', 'ATR0794G109' => 'atr', 'ATR0820G120' => 'atr', 'ATR1159G064' => 'atr', 'Atru.chr10.2239' => 'acertr', 'Atru.chr3.3371' => 'acertr', 'Atru.chr6.3202' => 'acertr', 'AUR62006499' => 'cqu', 'AUR62012718' => 'cqu', 'AUR62021938' => 'cqu', 'AUR62023932' => 'cqu', 'AUR62025034' => 'cqu', 'AUR62025035' => 'cqu', 'AUR62038307' => 'cqu', 'AUR62043466' => 'cqu', 'BcaB02g10748' => 'bca', 'BcaB03g13231' => 'bca', 'BcaB03g14689' => 'bca', 'BcaB05g22716' => 'bca', 'BcaB06g28172' => 'bca', 'BcaB08g36413' => 'bca', 'BcaC01g02186' => 'bca', 'BcaC01g04272' => 'bca', 'BcaC02g08080' => 'bca', 'BcaC02g08227' => 'bca', 'BcaC03g13901' => 'bca', 'BcaC04g19593' => 'bca', 'BcaC04g20874' => 'bca', 'BcaC05g29557' => 'bca', 'BcaC06g35505' => 'bca', 'BcaC07g41954' => 'bca', 'BcaC07g41955' => 'bca', 'BcaC07g41956' => 'bca', 'BcaC07g42519' => 'bca', 'BcaC07g42520' => 'bca', 'BcaC07g42523' => 'bca', 'BcaC07g42524' => 'bca', 'BcaC07g42525' => 'bca', 'BcaC08g47480' => 'bca', 'BcaC08g47481' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00530' => 'bna', 'BolC2t07178H' => 'bol', 'BolC3t16567H' => 'bol', 'BolC4t27234H' => 'bol', 'BolC5t29728H' => 'bol', 'BolC5t34622H' => 'bol', 'BolC6t40321H' => 'bol', 'BolC7t42028H' => 'bol', 'BolC8t49125H' => 'bol', 'BolC8t52538H' => 'bol', 'BolC8t52539H' => 'bol', 'BolC9t56681H' => 'bol', 'BolC9t58266H' => 'bol', 'BolSC21t60294H' => 'bol', 'BraA02t05670Z' => 'bra', 'BraA03t12716Z' => 'bra', 'BraA04t17685Z' => 'bra', 'BraA05t22788Z' => 'bra', 'BraA06t24032Z' => 'bra', 'BraA06t25625Z' => 'bra', 'BraA07t27930Z' => 'bra', 'BraA08t35242Z' => 'bra', 'BraA09t38609Z' => 'bra', 'BraA10t43905Z' => 'bra', 'C02p11060' => 'bna', 'C03p42990' => 'bna', 'C03p67310' => 'bna', 'C04p56990' => 'bna', 'C04p58660' => 'bna', 'C05p09890' => 'bna', 'C05p59680' => 'bna', 'C06p19830' => 'bna', 'C06p53040' => 'bna', 'C07p15230' => 'bna', 'C08p50070' => 'bna', 'C08p50090' => 'bna', 'C09p38330' => 'bna', 'C09p53940' => 'bna', 'CAN.G1014.1' => 'can', 'CAN.G644.30' => 'can', 'CAN.G84.47' => 'can', 'CAN.G919.8' => 'can', 'CANSAT54G0113' => 'cansat', 'CANSAT54G1286' => 'cansat', 'CANSAT64G1020' => 'cansat', 'CARHR008080' => 'chi', 'CARHR008090' => 'chi', 'CARHR012130' => 'chi', 'CARHR038390' => 'chi', 'CARHR082330' => 'chi', 'CARHR120520' => 'chi', 'CARHR151470' => 'chi', 'CARHR190950' => 'chi', 'Carub.0001s0760' => 'cru', 'Carub.0001s1146' => 'cru', 'Carub.0003s0721' => 'cru', 'Carub.0004s0858' => 'cru', 'Carub.0005s1040' => 'cru', 'Carub.0006s2035' => 'cru', 'Carub.0015s0005' => 'cru', 'Ca_01607_v3' => 'car', 'Ca_01677_v3' => 'car', 'Ca_06087_v3' => 'car', 'Ca_19238_v3' => 'car', 'Ca_19373_v3' => 'car', 'Ca_21079_v3' => 'car', 'CBR_g54016' => 'cbr', 'CBR_g54018' => 'cbr', 'CBR_g54020' => 'cbr', 'Cc01_g09780' => 'ccan', 'Cc01_g11680' => 'ccan', 'Cc02_g15610' => 'ccan', 'Cc05_g04350' => 'ccan', 'Cc09_g01580' => 'ccan', 'CDE01G0795' => 'cde', 'CDE02G2024' => 'cde', 'CDE02G2260' => 'cde', 'CDE02G4561' => 'cde', 'CDE05G2733' => 'cde', 'CDE05G3422' => 'cde', 'CDE06G2003' => 'cde', 'CDE08G0576' => 'cde', 'CDE09G0048' => 'cde', 'CDE11G0805' => 'cde', 'Cfa003644' => 'cfa', 'Cfa006290' => 'cfa', 'Cfa010080' => 'cfa', 'Cfa011376' => 'cfa', 'Cfa011576' => 'cfa', 'Cfa011577' => 'cfa', 'Cfa014389' => 'cfa', 'Ciclev10006044m.g' => 'ccl', 'Ciclev10006954m.g' => 'ccl', 'Ciclev10015131m.g' => 'ccl', 'Ciclev10015580m.g' => 'ccl', 'Ciclev10028359m.g' => 'ccl', 'Ciclev10028573m.g' => 'ccl', 'CiPaw.03G159300' => 'cil', 'CiPaw.04G115100' => 'cil', 'CiPaw.09G092800' => 'cil', 'CiPaw.10G071800' => 'cil', 'CiPaw.13G105800' => 'cil', 'CiPaw.13G141000' => 'cil', 'CiPaw.14G103400' => 'cil', 'ClCG01G012700' => 'cla', 'ClCG01G012720' => 'cla', 'ClCG01G021920' => 'cla', 'ClCG02G008870' => 'cla', 'ClCG02G020840' => 'cla', 'ClCG02G021930' => 'cla', 'COL.COLO4_19302' => 'col', 'COL.COLO4_25262' => 'col', 'COL.COLO4_31788' => 'col', 'Cpa.g.c34684' => 'cpa', 'Cpa.g.c36520.1' => 'cpa', 'Cpa.g.c45626' => 'cpa', 'Cpa.g.sc121.17' => 'cpa', 'Cpa.g.sc13.22' => 'cpa', 'Cpa.g.sc87.88' => 'cpa', 'Cre06.g261800' => 'cre', 'CsaV3_1G014500' => 'csa', 'CsaV3_1G014510' => 'csa', 'CsaV3_2G034880' => 'csa', 'CsaV3_6G014760' => 'csa', 'CsaV3_6G021500' => 'csa', 'CsaV3_6G048980' => 'csa', 'CSS0002511' => 'camsi', 'CSS0007556' => 'camsi', 'CSS0008532' => 'camsi', 'CSS0009709' => 'camsi', 'CSS0010486' => 'camsi', 'CSS0016768' => 'camsi', 'CSS0023512' => 'camsi', 'CSS0025341' => 'camsi', 'CSS0027999' => 'camsi', 'CSS0028944' => 'camsi', 'CSS0032292' => 'camsi', 'CSS0032464' => 'camsi', 'CSS0037153' => 'camsi', 'CSS0039256' => 'camsi', 'CSS0048392' => 'camsi', 'CSS0050458' => 'camsi', 'DCAR_004224' => 'dca', 'DCAR_006147' => 'dca', 'DCAR_006465' => 'dca', 'DCAR_008159' => 'dca', 'DCAR_012164' => 'dca', 'DCAR_019764' => 'dca', 'Dinv05418' => 'din', 'Dinv10839' => 'din', 'Dinv12521' => 'din', 'Dinv13900' => 'din', 'Dinv29426' => 'din', 'Duzib150G0263' => 'dzi', 'Duzib168G1178' => 'dzi', 'Duzib168G1924' => 'dzi', 'Duzib170G0299' => 'dzi', 'Duzib170G0813' => 'dzi', 'Duzib235G1128' => 'dzi', 'Duzib248G1060' => 'dzi', 'ECA232G1910' => 'eca', 'ECA233G4621' => 'eca', 'ECA238G1216' => 'eca', 'ECA238G1784' => 'eca', 'ECA248G1242' => 'eca', 'EL10Ac8g20071' => 'bvu', 'EL10Ac9g21086' => 'bvu', 'EL10Ac9g22407' => 'bvu', 'EL10Ac9g22412' => 'bvu', 'Eucgr.A01119' => 'egr', 'Eucgr.E04043' => 'egr', 'Eucgr.J00428' => 'egr', 'Eucgr.J00958' => 'egr', 'FAN11G3091' => 'fan', 'FAN11G3651' => 'fan', 'FAN16G2566' => 'fan', 'FAN21G3155' => 'fan', 'FAN21G3400' => 'fan', 'FAN21G3543' => 'fan', 'FAN25G0234' => 'fan', 'FAN25G1422' => 'fan', 'FAN25G3392' => 'fan', 'FvH4_3g01940' => 'fve', 'FvH4_3g29870' => 'fve', 'FvH4_3g33680' => 'fve', 'Glyma.09G004200' => 'gma', 'Glyma.11G151288' => 'gma', 'Glyma.11G189100' => 'gma', 'Glyma.12G072500' => 'gma', 'Glyma.12G085500' => 'gma', 'Glyma.12G181800' => 'gma', 'Glyma.12G193000' => 'gma', 'Glyma.13G309300' => 'gma', 'Glyma.13G319000' => 'gma', 'Glyma.17G012600' => 'gma', 'Gohir.A06G148600' => 'ghi', 'Gohir.A07G115800' => 'ghi', 'Gohir.A08G003600' => 'ghi', 'Gohir.A09G093300' => 'ghi', 'Gohir.A09G105400' => 'ghi', 'Gohir.A09G105500' => 'ghi', 'Gohir.D06G154600' => 'ghi', 'Gohir.D07G120200' => 'ghi', 'Gohir.D08G013900' => 'ghi', 'Gohir.D09G093100' => 'ghi', 'Gohir.D09G102200' => 'ghi', 'Gohir.D09G102300' => 'ghi', 'Gorai.001G129400' => 'gra', 'Gorai.004G008200' => 'gra', 'Gorai.006G109800' => 'gra', 'Gorai.006G119500' => 'gra', 'Gorai.006G121300' => 'gra', 'Gorai.010G180700' => 'gra', 'GSVIVG01012716001' => 'vvi', 'GSVIVG01025118001' => 'vvi', 'GSVIVG01030439001' => 'vvi', 'GSVIVG01031397001' => 'vvi', 'HanXRQChr01g0004201' => 'han', 'HanXRQChr02g0054941' => 'han', 'HanXRQChr05g0141811' => 'han', 'HanXRQChr07g0197751' => 'han', 'HanXRQChr11g0346691' => 'han', 'HanXRQChr13g0396971' => 'han', 'HanXRQChr14g0432951' => 'han', 'HanXRQChr14g0452001' => 'han', 'HanXRQChr15g0496681' => 'han', 'HanXRQChr17g0557491' => 'han', 'HanXRQChr17g0557501' => 'han', 'Haze_06809' => 'cav', 'Haze_12852' => 'cav', 'Haze_15850' => 'cav', 'Haze_23446' => 'cav', 'Haze_23942' => 'cav', 'Haze_23943' => 'cav', 'Hma1.2p1_0091F.1_g046450' => 'hma', 'Hma1.2p1_0128F.1_g059910' => 'hma', 'Hma1.2p1_0249F.1_g102260' => 'hma', 'Hma1.2p1_0453F.1_g156190' => 'hma', 'Hma1.2p1_0695F.1_g204380' => 'hma', 'Hma1.2p1_0749F.1_g212650' => 'hma', 'Hma1.2p1_2156F.1_g315420' => 'hma', 'Hma1.2p1_2686F.1_g326940' => 'hma', 'HPP92_006428' => 'vpl', 'HPP92_012069' => 'vpl', 'HPP92_014129' => 'vpl', 'HPP92_014133' => 'vpl', 'HPP92_017315' => 'vpl', 'HPP92_026445' => 'vpl', 'HPP92_026446' => 'vpl', 'Hund00774' => 'sun', 'Hund07682' => 'sun', 'Hund21413' => 'sun', 'Hund23462' => 'sun', 'Hund23463' => 'sun', 'Lalb_Chr03g0027911' => 'lal', 'Lalb_Chr13g0304271' => 'lal', 'Lalb_Chr19g0137471' => 'lal', 'Lalb_Chr22g0350651' => 'lal', 'Lalb_Chr24g0395151' => 'lal', 'Lj1A1231T40' => 'lonja', 'Lj1A221T48' => 'lonja', 'Lj1C924T12' => 'lonja', 'Lj2C993G6' => 'lonja', 'Lj3g0005790' => 'lja', 'Lj3g0015432' => 'lja', 'Lj3g0017722' => 'lja', 'Lj3g0018497' => 'lja', 'Lj4g0025071' => 'lja', 'Lsat_1_v5_gn_1_129680' => 'lsa', 'Lsat_1_v5_gn_2_25321' => 'lsa', 'Lsat_1_v5_gn_2_95461' => 'lsa', 'Lsat_1_v5_gn_4_159620' => 'lsa', 'Lsat_1_v5_gn_6_41301' => 'lsa', 'Lsat_1_v5_gn_6_74660' => 'lsa', 'Lsat_1_v5_gn_7_11520' => 'lsa', 'Lsat_1_v5_gn_9_67680' => 'lsa', 'Manes.04G008300' => 'mes', 'Manes.04G008400' => 'mes', 'Manes.04G026500' => 'mes', 'Manes.10G135300' => 'mes', 'Manes.11G157300' => 'mes', 'Manes.12G074000' => 'mes', 'Manes.16G006200' => 'mes', 'Manes.17G026400' => 'mes', 'Mapoly0024s0086' => 'mpo', 'Mapoly0024s0087' => 'mpo', 'Mapoly0071s0057' => 'mpo', 'Mapoly0204s0012' => 'mpo', 'MBI04_g37681_MAGBIO' => 'mbi', 'MBI05_g17779_MAGBIO' => 'mbi', 'MBI12_g31184_MAGBIO' => 'mbi', 'MBI17_g11083_MAGBIO' => 'mbi', 'MBI18_g03883_MAGBIO' => 'mbi', 'MBI18_g28940_MAGBIO' => 'mbi', 'MCO01G690' => 'mco', 'MD03G1109900' => 'mdo', 'MD03G1134800' => 'mdo', 'MD05G1348000' => 'mdo', 'MD10G1322400' => 'mdo', 'MD11G1123300' => 'mdo', 'MD11G1157600' => 'mdo', 'Medtr2g084875' => 'mtr', 'Medtr2g088130' => 'mtr', 'Medtr4g055310' => 'mtr', 'Medtr4g061070' => 'mtr', 'Medtr4g132250' => 'mtr', 'MELO3C004795.2' => 'cme', 'MELO3C004797.2' => 'cme', 'MELO3C007396.2' => 'cme', 'MELO3C019277.2' => 'cme', 'MELO3C021449.2' => 'cme', 'MELO3C025736.2' => 'cme', 'Migut.D02175' => 'egut', 'Migut.H01573' => 'egut', 'Migut.M01327' => 'egut', 'Migut.N02513' => 'egut', 'MSTRG.14638' => 'ama', 'MSTRG.18632' => 'ama', 'MSTRG.7203' => 'ama', 'Nitab4.5_0000533g0140' => 'nta', 'Nitab4.5_0000888g0150' => 'nta', 'Nitab4.5_0001453g0040' => 'nta', 'Nitab4.5_0002827g0090' => 'nta', 'Nitab4.5_0003082g0040' => 'nta', 'Nitab4.5_0007799g0040' => 'nta', 'Nitab4.5_0008983g0010' => 'nta', 'Nitab4.5_0009017g0020' => 'nta', 'Nn1g02132' => 'nnu', 'Nn1g03492' => 'nnu', 'Nn1g03493' => 'nnu', 'Nn1g03494' => 'nnu', 'Nn1g07164' => 'nnu', 'Nn1g07291' => 'nnu', 'Nn2g10655' => 'nnu', 'Nn2g11652' => 'nnu', 'Nn2g14008' => 'nnu', 'Nn3g17476' => 'nnu', 'Nn3g17477' => 'nnu', 'Nn4g22370' => 'nnu', 'Nn4g25255' => 'nnu', 'Nn5g27755' => 'nnu', 'Nn6g34260' => 'nnu', 'Nn6g35041' => 'nnu', 'Oeu005924.1' => 'oeu', 'Oeu008383.1' => 'oeu', 'Oeu014928.1' => 'oeu', 'Oeu019889.1' => 'oeu', 'Oeu022271.1' => 'oeu', 'Oeu025271.1' => 'oeu', 'Oeu036302.1' => 'oeu', 'Oeu044100.1' => 'oeu', 'Os01g0528300' => 'osa', 'Os03g0286200' => 'osa', 'Os04g0406600' => 'osa', 'Os07g0512000' => 'osa', 'Os07g0694600' => 'osa', 'Os08g0411000' => 'osa', 'Os09g0565700' => 'osa', 'Os09g0566050' => 'osa', 'Os10g0523700' => 'osa', 'Peaxi162Scf00002g00514' => 'pax', 'Peaxi162Scf00047g01817' => 'pax', 'Peaxi162Scf00114g00001' => 'pax', 'Peaxi162Scf00147g00613' => 'pax', 'Peaxi162Scf00389g00425' => 'pax', 'PGR042G1139' => 'pgr', 'PGR042G3273' => 'pgr', 'PGR102G2180' => 'pgr', 'PGR119G0234' => 'pgr', 'PGR119G0668' => 'pgr', 'PGSC0003DMG400007122' => 'stu', 'PGSC0003DMG400016478' => 'stu', 'PGSC0003DMG400025374' => 'stu', 'PGSC0003DMG400026536' => 'stu', 'Phvul.003G079600' => 'pvu', 'Phvul.005G115600' => 'pvu', 'Phvul.005G127100' => 'pvu', 'Phvul.006G149500' => 'pvu', 'Phvul.006G149600' => 'pvu', 'Phvul.011G071800' => 'pvu', 'Phvul.011G090400' => 'pvu', 'Potri.004G013400' => 'ptr', 'Potri.004G188100' => 'ptr', 'Potri.008G195500' => 'ptr', 'Potri.009G148800' => 'ptr', 'Potri.011G004700' => 'ptr', 'Pp3c17_22810' => 'ppa', 'Pp3c18_4480' => 'ppa', 'Pp3c19_13030' => 'ppa', 'Pp3c1_33620' => 'ppa', 'Pp3c2_9380' => 'ppa', 'PRCOL_00001023' => 'pco', 'Prupe.3G216300' => 'ppe', 'Prupe.4G019500' => 'ppe', 'Prupe.6G092500' => 'ppe', 'Prupe.6G119200' => 'ppe', 'Psat0s1945g0080' => 'psa', 'Psat0s4167g0040' => 'psa', 'Psat1g185800' => 'psa', 'Psat4g006440' => 'psa', 'Psat4g006480' => 'psa', 'Psat4g168120' => 'psa', 'Psat5g255680' => 'psa', 'Psat5g261760' => 'psa', 'Psat7g222120' => 'psa', 'PSO063G7252' => 'pso', 'PSO170G4778' => 'pso', 'PSO210G2249' => 'pso', 'PSO339G2411' => 'pso', 'PSO339G2457' => 'pso', 'PSO339G2854' => 'pso', 'PSO339G4288' => 'pso', 'PSO339G4615' => 'pso', 'PSO384G2796' => 'pso', 'PSO384G2940' => 'pso', 'PSO384G4227' => 'pso', 'PSO478G1425' => 'pso', 'PSO541G3863' => 'pso', 'PSO675G0507' => 'pso', 'PSO782G0338' => 'pso', 'PSO832G0644' => 'pso', 'QL01p013664' => 'qlo', 'QL01p036598' => 'qlo', 'QL05p072984' => 'qlo', 'QL08p005768' => 'qlo', 'QL08p032743' => 'qlo', 'QL93p0073_0439' => 'qlo', 'QL93p0073_0444' => 'qlo', 'RcHm_v2.0_Chr5g0002851' => 'rch', 'RcHm_v2.0_Chr5g0055201' => 'rch', 'RcHm_v2.0_Chr5g0061191' => 'rch', 'RcHm_v2.0_Chr7g0203231' => 'rch', 'Rhsim01G0208100' => 'rsi', 'Rhsim01G0208200' => 'rsi', 'Rhsim02G0106500' => 'rsi', 'Rhsim03G0107900' => 'rsi', 'Rhsim06G0163400' => 'rsi', 'Rhsim13G0105200' => 'rsi', 'Sabra04G0006300' => 'sbr', 'Sabra04G0127000' => 'sbr', 'Sabra08G0148700' => 'sbr', 'Sabra09G0117400' => 'sbr', 'SalBow1G3326' => 'sbo', 'SalBow3G3228' => 'sbo', 'SalBow6G1634' => 'sbo', 'SalBow6G3603' => 'sbo', 'SalBow6G5266' => 'sbo', 'SalBow7G2265' => 'sbo', 'SalBow8G0850' => 'sbo', 'SalBow8G2592' => 'sbo', 'Sc05g0009240' => 'sci', 'Sc12g0002300' => 'sci', 'Sc21g0000100' => 'sci', 'Sc21g0004720' => 'sci', 'Sed0002949' => 'sed', 'Sed0004114' => 'sed', 'Sed0004306' => 'sed', 'Sed0006172' => 'sed', 'Sed0008413' => 'sed', 'Sed0013809' => 'sed', 'Sed0019556' => 'sed', 'SEGI_03570' => 'sgi', 'SEGI_07859' => 'sgi', 'SEGI_15042' => 'sgi', 'SEGI_16263' => 'sgi', 'SEGI_16552' => 'sgi', 'SEGI_24331' => 'sgi', 'SEGI_27316' => 'sgi', 'SEGI_29521' => 'sgi', 'SEGI_41342' => 'sgi', 'SGA_v2.0_scaffold27G11617' => 'sas', 'SGA_v2.0_scaffold316G48428' => 'sas', 'SGA_v2.0_scaffold49G18261' => 'sas', 'SGA_v2.0_scaffold7G03831' => 'sas', 'SGA_v2.0_scaffold93G28359' => 'sas', 'SHI02210' => 'shi', 'SHI06028' => 'shi', 'SHI06321' => 'shi', 'SMO111G0012' => 'smo', 'SMO228G0080' => 'smo', 'SMO356G0756' => 'smo', 'Solyc02g080620.3' => 'sly', 'Solyc06g074530.1' => 'sly', 'Solyc11g066890.1' => 'sly', 'Solyc11g072520.3' => 'sly', 'Sopen02g025330' => 'spe', 'Sopen06g031000' => 'spe', 'Sopen09g008240' => 'spe', 'Sopen09g025210' => 'spe', 'Sopen11g026600' => 'spe', 'Sopen11g030170' => 'spe', 'Sp1g10420' => 'spa', 'Sp3g06570' => 'spa', 'Sp4g10660' => 'spa', 'Sp5g16460' => 'spa', 'Sp6g22710' => 'spa', 'TAR365G0112' => 'tar', 'TAR369G0717' => 'tar', 'TAR374G0976' => 'tar', 'TAR623G1128' => 'tar', 'TAR626G1937' => 'tar', 'TAR627G0123' => 'tar', 'TAR628G0305' => 'tar', 'TAR636G1176' => 'tar', 'TAR636G2442' => 'tar', 'THA.LOC104800556' => 'tha', 'THA.LOC104809501' => 'tha', 'THA.LOC104815126' => 'tha', 'THA.LOC104815732' => 'tha', 'THA.LOC104823528' => 'tha', 'Thecc.02G365600' => 'tca', 'Thecc.06G222300' => 'tca', 'Thecc.09G261800' => 'tca', 'Thecc.09G291400' => 'tca', 'Thhalv10003028m.g' => 'esa', 'Thhalv10007886m.g' => 'esa', 'Thhalv10016085m.g' => 'esa', 'Thhalv10016681m.g' => 'esa', 'Thhalv10020951m.g' => 'esa', 'TPR.G15598' => 'tpr', 'TPR.G29305' => 'tpr', 'TPR.G32395' => 'tpr', 'TPR.G36998' => 'tpr', 'TPR.G4227' => 'tpr', 'TWI18G1433' => 'twi', 'TWI31G0755' => 'twi', 'TWI38G0912' => 'twi', 'TWI75G1097' => 'twi', 'TWI75G1619' => 'twi', 'TWI79G1336' => 'twi', 'unitig_0.g943' => 'ugi', 'unitig_0.g944' => 'ugi', 'unitig_22.g6646' => 'ugi', 'unitig_37.g12681' => 'ugi', 'unitig_8.g3290' => 'ugi', 'vmacro03278' => 'vma', 'vmacro12197' => 'vma', 'vmacro14478' => 'vma', 'vmacro15787' => 'vma', 'vmacro15789' => 'vma', 'vmacro15790' => 'vma', 'vmacro15806' => 'vma', 'vmacro22907' => 'vma', 'vmacro22908' => 'vma', 'vmacro22909' => 'vma', 'vmacro23108' => 'vma', 'VMungo0540G0540' => 'vmu', 'VMungo0540G2468' => 'vmu', 'VMungo1080G0390' => 'vmu', 'VMungo1080G1165' => 'vmu', 'VMungo1127G0170' => 'vmu', 'VMungo1127G2099' => 'vmu', 'VMungo1215G3013' => 'vmu', 'Zm00001eb013110' => 'zma', 'Zm00001eb084260' => 'zma', 'Zm00001eb096110' => 'zma', 'Zm00001eb217510' => 'zma', 'Zm00001eb322550' => 'zma', 'Zm00001eb390770' => 'zma', 'Zm00001eb397170' => 'zma', 'Zm00001eb404610' => 'zma', 'Zm00001eb421790' => 'zma' ), 'gf_id' => 'HOM05D000911', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000911' ), 'data_identifier' => 'HOM05D000911', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000911', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27780' => 'bna', 'A03p35380' => 'bna', 'A04p21160' => 'bna', 'A05p40570' => 'bna', 'A06p26900' => 'bna', 'A08p33230' => 'bna', 'A09p65960' => 'bna', 'A10p18290' => 'bna', 'Aa31LG1G12990' => 'aar', 'Aa31LG1G2980' => 'aar', 'Aa31LG4G14320' => 'aar', 'Aa31LG7G11800' => 'aar', 'Aa31sc36G50' => 'aar', 'Aa31sc36G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3721' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5459' => 'aag', 'Actinidia03028' => 'ach', 'Actinidia03753' => 'ach', 'Actinidia04187' => 'ach', 'Actinidia05509' => 'ach', 'Actinidia24180' => 'ach', 'Actinidia26906' => 'ach', 'Actinidia37097' => 'ach', 'Actinidia38249' => 'ach', 'Ah.01g003470' => 'amhyb', 'Ah.01g004580' => 'amhyb', 'Ah.01g014850' => 'amhyb', 'Ah.01g016830' => 'amhyb', 'Ah.14g088000' => 'amhyb', 'AL1G22980' => 'aly', 'AL3G18990' => 'aly', 'AL4G22440' => 'aly', 'AL4G33180' => 'aly', 'AL5G22920' => 'aly', 'AL6G33660' => 'aly', 'AL8G20720' => 'aly', 'Aqoxy1G00935' => 'aox', 'Aqoxy1G02094' => 'aox', 'Aqoxy2G01239' => 'aox', 'Aqoxy4G01870' => 'aox', 'Aqoxy7G00450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.36ZVTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71EM27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5D6C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH3WRE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3NCM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RIM768' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YB5YRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z36GDV' => 'arhy', 'AT1G08250' => 'ath', 'AT1G11790' => 'ath', 'AT2G27820' => 'ath', 'AT3G07630' => 'ath', 'AT3G44720' => 'ath', 'AT5G22630' => 'ath', 'ATR0693G304' => 'atr', 'ATR0794G109' => 'atr', 'ATR0820G120' => 'atr', 'ATR1159G064' => 'atr', 'Atru.chr10.2239' => 'acertr', 'Atru.chr3.3371' => 'acertr', 'Atru.chr6.3202' => 'acertr', 'AUR62006499' => 'cqu', 'AUR62012718' => 'cqu', 'AUR62021938' => 'cqu', 'AUR62023932' => 'cqu', 'AUR62025034' => 'cqu', 'AUR62025035' => 'cqu', 'AUR62038307' => 'cqu', 'AUR62043466' => 'cqu', 'BcaB02g10748' => 'bca', 'BcaB03g13231' => 'bca', 'BcaB03g14689' => 'bca', 'BcaB05g22716' => 'bca', 'BcaB06g28172' => 'bca', 'BcaB08g36413' => 'bca', 'BcaC01g02186' => 'bca', 'BcaC01g04272' => 'bca', 'BcaC02g08080' => 'bca', 'BcaC02g08227' => 'bca', 'BcaC03g13901' => 'bca', 'BcaC04g19593' => 'bca', 'BcaC04g20874' => 'bca', 'BcaC05g29557' => 'bca', 'BcaC06g35505' => 'bca', 'BcaC07g41954' => 'bca', 'BcaC07g41955' => 'bca', 'BcaC07g41956' => 'bca', 'BcaC07g42519' => 'bca', 'BcaC07g42520' => 'bca', 'BcaC07g42523' => 'bca', 'BcaC07g42524' => 'bca', 'BcaC07g42525' => 'bca', 'BcaC08g47480' => 'bca', 'BcaC08g47481' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00530' => 'bna', 'BolC2t07178H' => 'bol', 'BolC3t16567H' => 'bol', 'BolC4t27234H' => 'bol', 'BolC5t29728H' => 'bol', 'BolC5t34622H' => 'bol', 'BolC6t40321H' => 'bol', 'BolC7t42028H' => 'bol', 'BolC8t49125H' => 'bol', 'BolC8t52538H' => 'bol', 'BolC8t52539H' => 'bol', 'BolC9t56681H' => 'bol', 'BolC9t58266H' => 'bol', 'BolSC21t60294H' => 'bol', 'BraA02t05670Z' => 'bra', 'BraA03t12716Z' => 'bra', 'BraA04t17685Z' => 'bra', 'BraA05t22788Z' => 'bra', 'BraA06t24032Z' => 'bra', 'BraA06t25625Z' => 'bra', 'BraA07t27930Z' => 'bra', 'BraA08t35242Z' => 'bra', 'BraA09t38609Z' => 'bra', 'BraA10t43905Z' => 'bra', 'C02p11060' => 'bna', 'C03p42990' => 'bna', 'C03p67310' => 'bna', 'C04p56990' => 'bna', 'C04p58660' => 'bna', 'C05p09890' => 'bna', 'C05p59680' => 'bna', 'C06p19830' => 'bna', 'C06p53040' => 'bna', 'C07p15230' => 'bna', 'C08p50070' => 'bna', 'C08p50090' => 'bna', 'C09p38330' => 'bna', 'C09p53940' => 'bna', 'CAN.G1014.1' => 'can', 'CAN.G644.30' => 'can', 'CAN.G84.47' => 'can', 'CAN.G919.8' => 'can', 'CANSAT54G0113' => 'cansat', 'CANSAT54G1286' => 'cansat', 'CANSAT64G1020' => 'cansat', 'CARHR008080' => 'chi', 'CARHR008090' => 'chi', 'CARHR012130' => 'chi', 'CARHR038390' => 'chi', 'CARHR082330' => 'chi', 'CARHR120520' => 'chi', 'CARHR151470' => 'chi', 'CARHR190950' => 'chi', 'Carub.0001s0760' => 'cru', 'Carub.0001s1146' => 'cru', 'Carub.0003s0721' => 'cru', 'Carub.0004s0858' => 'cru', 'Carub.0005s1040' => 'cru', 'Carub.0006s2035' => 'cru', 'Carub.0015s0005' => 'cru', 'Ca_01607_v3' => 'car', 'Ca_01677_v3' => 'car', 'Ca_06087_v3' => 'car', 'Ca_19238_v3' => 'car', 'Ca_19373_v3' => 'car', 'Ca_21079_v3' => 'car', 'CBR_g54016' => 'cbr', 'CBR_g54018' => 'cbr', 'CBR_g54020' => 'cbr', 'Cc01_g09780' => 'ccan', 'Cc01_g11680' => 'ccan', 'Cc02_g15610' => 'ccan', 'Cc05_g04350' => 'ccan', 'Cc09_g01580' => 'ccan', 'CDE01G0795' => 'cde', 'CDE02G2024' => 'cde', 'CDE02G2260' => 'cde', 'CDE02G4561' => 'cde', 'CDE05G2733' => 'cde', 'CDE05G3422' => 'cde', 'CDE06G2003' => 'cde', 'CDE08G0576' => 'cde', 'CDE09G0048' => 'cde', 'CDE11G0805' => 'cde', 'Cfa003644' => 'cfa', 'Cfa006290' => 'cfa', 'Cfa010080' => 'cfa', 'Cfa011376' => 'cfa', 'Cfa011576' => 'cfa', 'Cfa011577' => 'cfa', 'Cfa014389' => 'cfa', 'Ciclev10006044m.g' => 'ccl', 'Ciclev10006954m.g' => 'ccl', 'Ciclev10015131m.g' => 'ccl', 'Ciclev10015580m.g' => 'ccl', 'Ciclev10028359m.g' => 'ccl', 'Ciclev10028573m.g' => 'ccl', 'CiPaw.03G159300' => 'cil', 'CiPaw.04G115100' => 'cil', 'CiPaw.09G092800' => 'cil', 'CiPaw.10G071800' => 'cil', 'CiPaw.13G105800' => 'cil', 'CiPaw.13G141000' => 'cil', 'CiPaw.14G103400' => 'cil', 'ClCG01G012700' => 'cla', 'ClCG01G012720' => 'cla', 'ClCG01G021920' => 'cla', 'ClCG02G008870' => 'cla', 'ClCG02G020840' => 'cla', 'ClCG02G021930' => 'cla', 'COL.COLO4_19302' => 'col', 'COL.COLO4_25262' => 'col', 'COL.COLO4_31788' => 'col', 'Cpa.g.c34684' => 'cpa', 'Cpa.g.c36520.1' => 'cpa', 'Cpa.g.c45626' => 'cpa', 'Cpa.g.sc121.17' => 'cpa', 'Cpa.g.sc13.22' => 'cpa', 'Cpa.g.sc87.88' => 'cpa', 'Cre06.g261800' => 'cre', 'CsaV3_1G014500' => 'csa', 'CsaV3_1G014510' => 'csa', 'CsaV3_2G034880' => 'csa', 'CsaV3_6G014760' => 'csa', 'CsaV3_6G021500' => 'csa', 'CsaV3_6G048980' => 'csa', 'CSS0002511' => 'camsi', 'CSS0007556' => 'camsi', 'CSS0008532' => 'camsi', 'CSS0009709' => 'camsi', 'CSS0010486' => 'camsi', 'CSS0016768' => 'camsi', 'CSS0023512' => 'camsi', 'CSS0025341' => 'camsi', 'CSS0027999' => 'camsi', 'CSS0028944' => 'camsi', 'CSS0032292' => 'camsi', 'CSS0032464' => 'camsi', 'CSS0037153' => 'camsi', 'CSS0039256' => 'camsi', 'CSS0048392' => 'camsi', 'CSS0050458' => 'camsi', 'DCAR_004224' => 'dca', 'DCAR_006147' => 'dca', 'DCAR_006465' => 'dca', 'DCAR_008159' => 'dca', 'DCAR_012164' => 'dca', 'DCAR_019764' => 'dca', 'Dinv05418' => 'din', 'Dinv10839' => 'din', 'Dinv12521' => 'din', 'Dinv13900' => 'din', 'Dinv29426' => 'din', 'Duzib150G0263' => 'dzi', 'Duzib168G1178' => 'dzi', 'Duzib168G1924' => 'dzi', 'Duzib170G0299' => 'dzi', 'Duzib170G0813' => 'dzi', 'Duzib235G1128' => 'dzi', 'Duzib248G1060' => 'dzi', 'ECA232G1910' => 'eca', 'ECA233G4621' => 'eca', 'ECA238G1216' => 'eca', 'ECA238G1784' => 'eca', 'ECA248G1242' => 'eca', 'EL10Ac8g20071' => 'bvu', 'EL10Ac9g21086' => 'bvu', 'EL10Ac9g22407' => 'bvu', 'EL10Ac9g22412' => 'bvu', 'Eucgr.A01119' => 'egr', 'Eucgr.E04043' => 'egr', 'Eucgr.J00428' => 'egr', 'Eucgr.J00958' => 'egr', 'FAN11G3091' => 'fan', 'FAN11G3651' => 'fan', 'FAN16G2566' => 'fan', 'FAN21G3155' => 'fan', 'FAN21G3400' => 'fan', 'FAN21G3543' => 'fan', 'FAN25G0234' => 'fan', 'FAN25G1422' => 'fan', 'FAN25G3392' => 'fan', 'FvH4_3g01940' => 'fve', 'FvH4_3g29870' => 'fve', 'FvH4_3g33680' => 'fve', 'Glyma.09G004200' => 'gma', 'Glyma.11G151288' => 'gma', 'Glyma.11G189100' => 'gma', 'Glyma.12G072500' => 'gma', 'Glyma.12G085500' => 'gma', 'Glyma.12G181800' => 'gma', 'Glyma.12G193000' => 'gma', 'Glyma.13G309300' => 'gma', 'Glyma.13G319000' => 'gma', 'Glyma.17G012600' => 'gma', 'Gohir.A06G148600' => 'ghi', 'Gohir.A07G115800' => 'ghi', 'Gohir.A08G003600' => 'ghi', 'Gohir.A09G093300' => 'ghi', 'Gohir.A09G105400' => 'ghi', 'Gohir.A09G105500' => 'ghi', 'Gohir.D06G154600' => 'ghi', 'Gohir.D07G120200' => 'ghi', 'Gohir.D08G013900' => 'ghi', 'Gohir.D09G093100' => 'ghi', 'Gohir.D09G102200' => 'ghi', 'Gohir.D09G102300' => 'ghi', 'Gorai.001G129400' => 'gra', 'Gorai.004G008200' => 'gra', 'Gorai.006G109800' => 'gra', 'Gorai.006G119500' => 'gra', 'Gorai.006G121300' => 'gra', 'Gorai.010G180700' => 'gra', 'GSVIVG01012716001' => 'vvi', 'GSVIVG01025118001' => 'vvi', 'GSVIVG01030439001' => 'vvi', 'GSVIVG01031397001' => 'vvi', 'HanXRQChr01g0004201' => 'han', 'HanXRQChr02g0054941' => 'han', 'HanXRQChr05g0141811' => 'han', 'HanXRQChr07g0197751' => 'han', 'HanXRQChr11g0346691' => 'han', 'HanXRQChr13g0396971' => 'han', 'HanXRQChr14g0432951' => 'han', 'HanXRQChr14g0452001' => 'han', 'HanXRQChr15g0496681' => 'han', 'HanXRQChr17g0557491' => 'han', 'HanXRQChr17g0557501' => 'han', 'Haze_06809' => 'cav', 'Haze_12852' => 'cav', 'Haze_15850' => 'cav', 'Haze_23446' => 'cav', 'Haze_23942' => 'cav', 'Haze_23943' => 'cav', 'Hma1.2p1_0091F.1_g046450' => 'hma', 'Hma1.2p1_0128F.1_g059910' => 'hma', 'Hma1.2p1_0249F.1_g102260' => 'hma', 'Hma1.2p1_0453F.1_g156190' => 'hma', 'Hma1.2p1_0695F.1_g204380' => 'hma', 'Hma1.2p1_0749F.1_g212650' => 'hma', 'Hma1.2p1_2156F.1_g315420' => 'hma', 'Hma1.2p1_2686F.1_g326940' => 'hma', 'HPP92_006428' => 'vpl', 'HPP92_012069' => 'vpl', 'HPP92_014129' => 'vpl', 'HPP92_014133' => 'vpl', 'HPP92_017315' => 'vpl', 'HPP92_026445' => 'vpl', 'HPP92_026446' => 'vpl', 'Hund00774' => 'sun', 'Hund07682' => 'sun', 'Hund21413' => 'sun', 'Hund23462' => 'sun', 'Hund23463' => 'sun', 'Lalb_Chr03g0027911' => 'lal', 'Lalb_Chr13g0304271' => 'lal', 'Lalb_Chr19g0137471' => 'lal', 'Lalb_Chr22g0350651' => 'lal', 'Lalb_Chr24g0395151' => 'lal', 'Lj1A1231T40' => 'lonja', 'Lj1A221T48' => 'lonja', 'Lj1C924T12' => 'lonja', 'Lj2C993G6' => 'lonja', 'Lj3g0005790' => 'lja', 'Lj3g0015432' => 'lja', 'Lj3g0017722' => 'lja', 'Lj3g0018497' => 'lja', 'Lj4g0025071' => 'lja', 'Lsat_1_v5_gn_1_129680' => 'lsa', 'Lsat_1_v5_gn_2_25321' => 'lsa', 'Lsat_1_v5_gn_2_95461' => 'lsa', 'Lsat_1_v5_gn_4_159620' => 'lsa', 'Lsat_1_v5_gn_6_41301' => 'lsa', 'Lsat_1_v5_gn_6_74660' => 'lsa', 'Lsat_1_v5_gn_7_11520' => 'lsa', 'Lsat_1_v5_gn_9_67680' => 'lsa', 'Manes.04G008300' => 'mes', 'Manes.04G008400' => 'mes', 'Manes.04G026500' => 'mes', 'Manes.10G135300' => 'mes', 'Manes.11G157300' => 'mes', 'Manes.12G074000' => 'mes', 'Manes.16G006200' => 'mes', 'Manes.17G026400' => 'mes', 'Mapoly0024s0086' => 'mpo', 'Mapoly0024s0087' => 'mpo', 'Mapoly0071s0057' => 'mpo', 'Mapoly0204s0012' => 'mpo', 'MBI04_g37681_MAGBIO' => 'mbi', 'MBI05_g17779_MAGBIO' => 'mbi', 'MBI12_g31184_MAGBIO' => 'mbi', 'MBI17_g11083_MAGBIO' => 'mbi', 'MBI18_g03883_MAGBIO' => 'mbi', 'MBI18_g28940_MAGBIO' => 'mbi', 'MCO01G690' => 'mco', 'MD03G1109900' => 'mdo', 'MD03G1134800' => 'mdo', 'MD05G1348000' => 'mdo', 'MD10G1322400' => 'mdo', 'MD11G1123300' => 'mdo', 'MD11G1157600' => 'mdo', 'Medtr2g084875' => 'mtr', 'Medtr2g088130' => 'mtr', 'Medtr4g055310' => 'mtr', 'Medtr4g061070' => 'mtr', 'Medtr4g132250' => 'mtr', 'MELO3C004795.2' => 'cme', 'MELO3C004797.2' => 'cme', 'MELO3C007396.2' => 'cme', 'MELO3C019277.2' => 'cme', 'MELO3C021449.2' => 'cme', 'MELO3C025736.2' => 'cme', 'Migut.D02175' => 'egut', 'Migut.H01573' => 'egut', 'Migut.M01327' => 'egut', 'Migut.N02513' => 'egut', 'MSTRG.14638' => 'ama', 'MSTRG.18632' => 'ama', 'MSTRG.7203' => 'ama', 'Nitab4.5_0000533g0140' => 'nta', 'Nitab4.5_0000888g0150' => 'nta', 'Nitab4.5_0001453g0040' => 'nta', 'Nitab4.5_0002827g0090' => 'nta', 'Nitab4.5_0003082g0040' => 'nta', 'Nitab4.5_0007799g0040' => 'nta', 'Nitab4.5_0008983g0010' => 'nta', 'Nitab4.5_0009017g0020' => 'nta', 'Nn1g02132' => 'nnu', 'Nn1g03492' => 'nnu', 'Nn1g03493' => 'nnu', 'Nn1g03494' => 'nnu', 'Nn1g07164' => 'nnu', 'Nn1g07291' => 'nnu', 'Nn2g10655' => 'nnu', 'Nn2g11652' => 'nnu', 'Nn2g14008' => 'nnu', 'Nn3g17476' => 'nnu', 'Nn3g17477' => 'nnu', 'Nn4g22370' => 'nnu', 'Nn4g25255' => 'nnu', 'Nn5g27755' => 'nnu', 'Nn6g34260' => 'nnu', 'Nn6g35041' => 'nnu', 'Oeu005924.1' => 'oeu', 'Oeu008383.1' => 'oeu', 'Oeu014928.1' => 'oeu', 'Oeu019889.1' => 'oeu', 'Oeu022271.1' => 'oeu', 'Oeu025271.1' => 'oeu', 'Oeu036302.1' => 'oeu', 'Oeu044100.1' => 'oeu', 'Os01g0528300' => 'osa', 'Os03g0286200' => 'osa', 'Os04g0406600' => 'osa', 'Os07g0512000' => 'osa', 'Os07g0694600' => 'osa', 'Os08g0411000' => 'osa', 'Os09g0565700' => 'osa', 'Os09g0566050' => 'osa', 'Os10g0523700' => 'osa', 'Peaxi162Scf00002g00514' => 'pax', 'Peaxi162Scf00047g01817' => 'pax', 'Peaxi162Scf00114g00001' => 'pax', 'Peaxi162Scf00147g00613' => 'pax', 'Peaxi162Scf00389g00425' => 'pax', 'PGR042G1139' => 'pgr', 'PGR042G3273' => 'pgr', 'PGR102G2180' => 'pgr', 'PGR119G0234' => 'pgr', 'PGR119G0668' => 'pgr', 'PGSC0003DMG400007122' => 'stu', 'PGSC0003DMG400016478' => 'stu', 'PGSC0003DMG400025374' => 'stu', 'PGSC0003DMG400026536' => 'stu', 'Phvul.003G079600' => 'pvu', 'Phvul.005G115600' => 'pvu', 'Phvul.005G127100' => 'pvu', 'Phvul.006G149500' => 'pvu', 'Phvul.006G149600' => 'pvu', 'Phvul.011G071800' => 'pvu', 'Phvul.011G090400' => 'pvu', 'Potri.004G013400' => 'ptr', 'Potri.004G188100' => 'ptr', 'Potri.008G195500' => 'ptr', 'Potri.009G148800' => 'ptr', 'Potri.011G004700' => 'ptr', 'Pp3c17_22810' => 'ppa', 'Pp3c18_4480' => 'ppa', 'Pp3c19_13030' => 'ppa', 'Pp3c1_33620' => 'ppa', 'Pp3c2_9380' => 'ppa', 'PRCOL_00001023' => 'pco', 'Prupe.3G216300' => 'ppe', 'Prupe.4G019500' => 'ppe', 'Prupe.6G092500' => 'ppe', 'Prupe.6G119200' => 'ppe', 'Psat0s1945g0080' => 'psa', 'Psat0s4167g0040' => 'psa', 'Psat1g185800' => 'psa', 'Psat4g006440' => 'psa', 'Psat4g006480' => 'psa', 'Psat4g168120' => 'psa', 'Psat5g255680' => 'psa', 'Psat5g261760' => 'psa', 'Psat7g222120' => 'psa', 'PSO063G7252' => 'pso', 'PSO170G4778' => 'pso', 'PSO210G2249' => 'pso', 'PSO339G2411' => 'pso', 'PSO339G2457' => 'pso', 'PSO339G2854' => 'pso', 'PSO339G4288' => 'pso', 'PSO339G4615' => 'pso', 'PSO384G2796' => 'pso', 'PSO384G2940' => 'pso', 'PSO384G4227' => 'pso', 'PSO478G1425' => 'pso', 'PSO541G3863' => 'pso', 'PSO675G0507' => 'pso', 'PSO782G0338' => 'pso', 'PSO832G0644' => 'pso', 'QL01p013664' => 'qlo', 'QL01p036598' => 'qlo', 'QL05p072984' => 'qlo', 'QL08p005768' => 'qlo', 'QL08p032743' => 'qlo', 'QL93p0073_0439' => 'qlo', 'QL93p0073_0444' => 'qlo', 'RcHm_v2.0_Chr5g0002851' => 'rch', 'RcHm_v2.0_Chr5g0055201' => 'rch', 'RcHm_v2.0_Chr5g0061191' => 'rch', 'RcHm_v2.0_Chr7g0203231' => 'rch', 'Rhsim01G0208100' => 'rsi', 'Rhsim01G0208200' => 'rsi', 'Rhsim02G0106500' => 'rsi', 'Rhsim03G0107900' => 'rsi', 'Rhsim06G0163400' => 'rsi', 'Rhsim13G0105200' => 'rsi', 'Sabra04G0006300' => 'sbr', 'Sabra04G0127000' => 'sbr', 'Sabra08G0148700' => 'sbr', 'Sabra09G0117400' => 'sbr', 'SalBow1G3326' => 'sbo', 'SalBow3G3228' => 'sbo', 'SalBow6G1634' => 'sbo', 'SalBow6G3603' => 'sbo', 'SalBow6G5266' => 'sbo', 'SalBow7G2265' => 'sbo', 'SalBow8G0850' => 'sbo', 'SalBow8G2592' => 'sbo', 'Sc05g0009240' => 'sci', 'Sc12g0002300' => 'sci', 'Sc21g0000100' => 'sci', 'Sc21g0004720' => 'sci', 'Sed0002949' => 'sed', 'Sed0004114' => 'sed', 'Sed0004306' => 'sed', 'Sed0006172' => 'sed', 'Sed0008413' => 'sed', 'Sed0013809' => 'sed', 'Sed0019556' => 'sed', 'SEGI_03570' => 'sgi', 'SEGI_07859' => 'sgi', 'SEGI_15042' => 'sgi', 'SEGI_16263' => 'sgi', 'SEGI_16552' => 'sgi', 'SEGI_24331' => 'sgi', 'SEGI_27316' => 'sgi', 'SEGI_29521' => 'sgi', 'SEGI_41342' => 'sgi', 'SGA_v2.0_scaffold27G11617' => 'sas', 'SGA_v2.0_scaffold316G48428' => 'sas', 'SGA_v2.0_scaffold49G18261' => 'sas', 'SGA_v2.0_scaffold7G03831' => 'sas', 'SGA_v2.0_scaffold93G28359' => 'sas', 'SHI02210' => 'shi', 'SHI06028' => 'shi', 'SHI06321' => 'shi', 'SMO111G0012' => 'smo', 'SMO228G0080' => 'smo', 'SMO356G0756' => 'smo', 'Solyc02g080620.3' => 'sly', 'Solyc06g074530.1' => 'sly', 'Solyc11g066890.1' => 'sly', 'Solyc11g072520.3' => 'sly', 'Sopen02g025330' => 'spe', 'Sopen06g031000' => 'spe', 'Sopen09g008240' => 'spe', 'Sopen09g025210' => 'spe', 'Sopen11g026600' => 'spe', 'Sopen11g030170' => 'spe', 'Sp1g10420' => 'spa', 'Sp3g06570' => 'spa', 'Sp4g10660' => 'spa', 'Sp5g16460' => 'spa', 'Sp6g22710' => 'spa', 'TAR365G0112' => 'tar', 'TAR369G0717' => 'tar', 'TAR374G0976' => 'tar', 'TAR623G1128' => 'tar', 'TAR626G1937' => 'tar', 'TAR627G0123' => 'tar', 'TAR628G0305' => 'tar', 'TAR636G1176' => 'tar', 'TAR636G2442' => 'tar', 'THA.LOC104800556' => 'tha', 'THA.LOC104809501' => 'tha', 'THA.LOC104815126' => 'tha', 'THA.LOC104815732' => 'tha', 'THA.LOC104823528' => 'tha', 'Thecc.02G365600' => 'tca', 'Thecc.06G222300' => 'tca', 'Thecc.09G261800' => 'tca', 'Thecc.09G291400' => 'tca', 'Thhalv10003028m.g' => 'esa', 'Thhalv10007886m.g' => 'esa', 'Thhalv10016085m.g' => 'esa', 'Thhalv10016681m.g' => 'esa', 'Thhalv10020951m.g' => 'esa', 'TPR.G15598' => 'tpr', 'TPR.G29305' => 'tpr', 'TPR.G32395' => 'tpr', 'TPR.G36998' => 'tpr', 'TPR.G4227' => 'tpr', 'TWI18G1433' => 'twi', 'TWI31G0755' => 'twi', 'TWI38G0912' => 'twi', 'TWI75G1097' => 'twi', 'TWI75G1619' => 'twi', 'TWI79G1336' => 'twi', 'unitig_0.g943' => 'ugi', 'unitig_0.g944' => 'ugi', 'unitig_22.g6646' => 'ugi', 'unitig_37.g12681' => 'ugi', 'unitig_8.g3290' => 'ugi', 'vmacro03278' => 'vma', 'vmacro12197' => 'vma', 'vmacro14478' => 'vma', 'vmacro15787' => 'vma', 'vmacro15789' => 'vma', 'vmacro15790' => 'vma', 'vmacro15806' => 'vma', 'vmacro22907' => 'vma', 'vmacro22908' => 'vma', 'vmacro22909' => 'vma', 'vmacro23108' => 'vma', 'VMungo0540G0540' => 'vmu', 'VMungo0540G2468' => 'vmu', 'VMungo1080G0390' => 'vmu', 'VMungo1080G1165' => 'vmu', 'VMungo1127G0170' => 'vmu', 'VMungo1127G2099' => 'vmu', 'VMungo1215G3013' => 'vmu', 'Zm00001eb013110' => 'zma', 'Zm00001eb084260' => 'zma', 'Zm00001eb096110' => 'zma', 'Zm00001eb217510' => 'zma', 'Zm00001eb322550' => 'zma', 'Zm00001eb390770' => 'zma', 'Zm00001eb397170' => 'zma', 'Zm00001eb404610' => 'zma', 'Zm00001eb421790' => 'zma' ) $gf_id = 'HOM05D000911' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000911' ) $data_identifier = 'HOM05D000911' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 16, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 5, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 6, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 8, 'nnu' => (int) 16, 'oeu' => (int) 8, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 5, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 16, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421790' $species_info = array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ) $local_species = 'shi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000911', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27780' => 'bna', 'A03p35380' => 'bna', 'A04p21160' => 'bna', 'A05p40570' => 'bna', 'A06p26900' => 'bna', 'A08p33230' => 'bna', 'A09p65960' => 'bna', 'A10p18290' => 'bna', 'Aa31LG1G12990' => 'aar', 'Aa31LG1G2980' => 'aar', 'Aa31LG4G14320' => 'aar', 'Aa31LG7G11800' => 'aar', 'Aa31sc36G50' => 'aar', 'Aa31sc36G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3721' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5459' => 'aag', 'Actinidia03028' => 'ach', 'Actinidia03753' => 'ach', 'Actinidia04187' => 'ach', 'Actinidia05509' => 'ach', 'Actinidia24180' => 'ach', 'Actinidia26906' => 'ach', 'Actinidia37097' => 'ach', 'Actinidia38249' => 'ach', 'Ah.01g003470' => 'amhyb', 'Ah.01g004580' => 'amhyb', 'Ah.01g014850' => 'amhyb', 'Ah.01g016830' => 'amhyb', 'Ah.14g088000' => 'amhyb', 'AL1G22980' => 'aly', 'AL3G18990' => 'aly', 'AL4G22440' => 'aly', 'AL4G33180' => 'aly', 'AL5G22920' => 'aly', 'AL6G33660' => 'aly', 'AL8G20720' => 'aly', 'Aqoxy1G00935' => 'aox', 'Aqoxy1G02094' => 'aox', 'Aqoxy2G01239' => 'aox', 'Aqoxy4G01870' => 'aox', 'Aqoxy7G00450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.36ZVTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71EM27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5D6C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH3WRE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3NCM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RIM768' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YB5YRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z36GDV' => 'arhy', 'AT1G08250' => 'ath', 'AT1G11790' => 'ath', 'AT2G27820' => 'ath', 'AT3G07630' => 'ath', 'AT3G44720' => 'ath', 'AT5G22630' => 'ath', 'ATR0693G304' => 'atr', 'ATR0794G109' => 'atr', 'ATR0820G120' => 'atr', 'ATR1159G064' => 'atr', 'Atru.chr10.2239' => 'acertr', 'Atru.chr3.3371' => 'acertr', 'Atru.chr6.3202' => 'acertr', 'AUR62006499' => 'cqu', 'AUR62012718' => 'cqu', 'AUR62021938' => 'cqu', 'AUR62023932' => 'cqu', 'AUR62025034' => 'cqu', 'AUR62025035' => 'cqu', 'AUR62038307' => 'cqu', 'AUR62043466' => 'cqu', 'BcaB02g10748' => 'bca', 'BcaB03g13231' => 'bca', 'BcaB03g14689' => 'bca', 'BcaB05g22716' => 'bca', 'BcaB06g28172' => 'bca', 'BcaB08g36413' => 'bca', 'BcaC01g02186' => 'bca', 'BcaC01g04272' => 'bca', 'BcaC02g08080' => 'bca', 'BcaC02g08227' => 'bca', 'BcaC03g13901' => 'bca', 'BcaC04g19593' => 'bca', 'BcaC04g20874' => 'bca', 'BcaC05g29557' => 'bca', 'BcaC06g35505' => 'bca', 'BcaC07g41954' => 'bca', 'BcaC07g41955' => 'bca', 'BcaC07g41956' => 'bca', 'BcaC07g42519' => 'bca', 'BcaC07g42520' => 'bca', 'BcaC07g42523' => 'bca', 'BcaC07g42524' => 'bca', 'BcaC07g42525' => 'bca', 'BcaC08g47480' => 'bca', 'BcaC08g47481' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00530' => 'bna', 'BolC2t07178H' => 'bol', 'BolC3t16567H' => 'bol', 'BolC4t27234H' => 'bol', 'BolC5t29728H' => 'bol', 'BolC5t34622H' => 'bol', 'BolC6t40321H' => 'bol', 'BolC7t42028H' => 'bol', 'BolC8t49125H' => 'bol', 'BolC8t52538H' => 'bol', 'BolC8t52539H' => 'bol', 'BolC9t56681H' => 'bol', 'BolC9t58266H' => 'bol', 'BolSC21t60294H' => 'bol', 'BraA02t05670Z' => 'bra', 'BraA03t12716Z' => 'bra', 'BraA04t17685Z' => 'bra', 'BraA05t22788Z' => 'bra', 'BraA06t24032Z' => 'bra', 'BraA06t25625Z' => 'bra', 'BraA07t27930Z' => 'bra', 'BraA08t35242Z' => 'bra', 'BraA09t38609Z' => 'bra', 'BraA10t43905Z' => 'bra', 'C02p11060' => 'bna', 'C03p42990' => 'bna', 'C03p67310' => 'bna', 'C04p56990' => 'bna', 'C04p58660' => 'bna', 'C05p09890' => 'bna', 'C05p59680' => 'bna', 'C06p19830' => 'bna', 'C06p53040' => 'bna', 'C07p15230' => 'bna', 'C08p50070' => 'bna', 'C08p50090' => 'bna', 'C09p38330' => 'bna', 'C09p53940' => 'bna', 'CAN.G1014.1' => 'can', 'CAN.G644.30' => 'can', 'CAN.G84.47' => 'can', 'CAN.G919.8' => 'can', 'CANSAT54G0113' => 'cansat', 'CANSAT54G1286' => 'cansat', 'CANSAT64G1020' => 'cansat', 'CARHR008080' => 'chi', 'CARHR008090' => 'chi', 'CARHR012130' => 'chi', 'CARHR038390' => 'chi', 'CARHR082330' => 'chi', 'CARHR120520' => 'chi', 'CARHR151470' => 'chi', 'CARHR190950' => 'chi', 'Carub.0001s0760' => 'cru', 'Carub.0001s1146' => 'cru', 'Carub.0003s0721' => 'cru', 'Carub.0004s0858' => 'cru', 'Carub.0005s1040' => 'cru', 'Carub.0006s2035' => 'cru', 'Carub.0015s0005' => 'cru', 'Ca_01607_v3' => 'car', 'Ca_01677_v3' => 'car', 'Ca_06087_v3' => 'car', 'Ca_19238_v3' => 'car', 'Ca_19373_v3' => 'car', 'Ca_21079_v3' => 'car', 'CBR_g54016' => 'cbr', 'CBR_g54018' => 'cbr', 'CBR_g54020' => 'cbr', 'Cc01_g09780' => 'ccan', 'Cc01_g11680' => 'ccan', 'Cc02_g15610' => 'ccan', 'Cc05_g04350' => 'ccan', 'Cc09_g01580' => 'ccan', 'CDE01G0795' => 'cde', 'CDE02G2024' => 'cde', 'CDE02G2260' => 'cde', 'CDE02G4561' => 'cde', 'CDE05G2733' => 'cde', 'CDE05G3422' => 'cde', 'CDE06G2003' => 'cde', 'CDE08G0576' => 'cde', 'CDE09G0048' => 'cde', 'CDE11G0805' => 'cde', 'Cfa003644' => 'cfa', 'Cfa006290' => 'cfa', 'Cfa010080' => 'cfa', 'Cfa011376' => 'cfa', 'Cfa011576' => 'cfa', 'Cfa011577' => 'cfa', 'Cfa014389' => 'cfa', 'Ciclev10006044m.g' => 'ccl', 'Ciclev10006954m.g' => 'ccl', 'Ciclev10015131m.g' => 'ccl', 'Ciclev10015580m.g' => 'ccl', 'Ciclev10028359m.g' => 'ccl', 'Ciclev10028573m.g' => 'ccl', 'CiPaw.03G159300' => 'cil', 'CiPaw.04G115100' => 'cil', 'CiPaw.09G092800' => 'cil', 'CiPaw.10G071800' => 'cil', 'CiPaw.13G105800' => 'cil', 'CiPaw.13G141000' => 'cil', 'CiPaw.14G103400' => 'cil', 'ClCG01G012700' => 'cla', 'ClCG01G012720' => 'cla', 'ClCG01G021920' => 'cla', 'ClCG02G008870' => 'cla', 'ClCG02G020840' => 'cla', 'ClCG02G021930' => 'cla', 'COL.COLO4_19302' => 'col', 'COL.COLO4_25262' => 'col', 'COL.COLO4_31788' => 'col', 'Cpa.g.c34684' => 'cpa', 'Cpa.g.c36520.1' => 'cpa', 'Cpa.g.c45626' => 'cpa', 'Cpa.g.sc121.17' => 'cpa', 'Cpa.g.sc13.22' => 'cpa', 'Cpa.g.sc87.88' => 'cpa', 'Cre06.g261800' => 'cre', 'CsaV3_1G014500' => 'csa', 'CsaV3_1G014510' => 'csa', 'CsaV3_2G034880' => 'csa', 'CsaV3_6G014760' => 'csa', 'CsaV3_6G021500' => 'csa', 'CsaV3_6G048980' => 'csa', 'CSS0002511' => 'camsi', 'CSS0007556' => 'camsi', 'CSS0008532' => 'camsi', 'CSS0009709' => 'camsi', 'CSS0010486' => 'camsi', 'CSS0016768' => 'camsi', 'CSS0023512' => 'camsi', 'CSS0025341' => 'camsi', 'CSS0027999' => 'camsi', 'CSS0028944' => 'camsi', 'CSS0032292' => 'camsi', 'CSS0032464' => 'camsi', 'CSS0037153' => 'camsi', 'CSS0039256' => 'camsi', 'CSS0048392' => 'camsi', 'CSS0050458' => 'camsi', 'DCAR_004224' => 'dca', 'DCAR_006147' => 'dca', 'DCAR_006465' => 'dca', 'DCAR_008159' => 'dca', 'DCAR_012164' => 'dca', 'DCAR_019764' => 'dca', 'Dinv05418' => 'din', 'Dinv10839' => 'din', 'Dinv12521' => 'din', 'Dinv13900' => 'din', 'Dinv29426' => 'din', 'Duzib150G0263' => 'dzi', 'Duzib168G1178' => 'dzi', 'Duzib168G1924' => 'dzi', 'Duzib170G0299' => 'dzi', 'Duzib170G0813' => 'dzi', 'Duzib235G1128' => 'dzi', 'Duzib248G1060' => 'dzi', 'ECA232G1910' => 'eca', 'ECA233G4621' => 'eca', 'ECA238G1216' => 'eca', 'ECA238G1784' => 'eca', 'ECA248G1242' => 'eca', 'EL10Ac8g20071' => 'bvu', 'EL10Ac9g21086' => 'bvu', 'EL10Ac9g22407' => 'bvu', 'EL10Ac9g22412' => 'bvu', 'Eucgr.A01119' => 'egr', 'Eucgr.E04043' => 'egr', 'Eucgr.J00428' => 'egr', 'Eucgr.J00958' => 'egr', 'FAN11G3091' => 'fan', 'FAN11G3651' => 'fan', 'FAN16G2566' => 'fan', 'FAN21G3155' => 'fan', 'FAN21G3400' => 'fan', 'FAN21G3543' => 'fan', 'FAN25G0234' => 'fan', 'FAN25G1422' => 'fan', 'FAN25G3392' => 'fan', 'FvH4_3g01940' => 'fve', 'FvH4_3g29870' => 'fve', 'FvH4_3g33680' => 'fve', 'Glyma.09G004200' => 'gma', 'Glyma.11G151288' => 'gma', 'Glyma.11G189100' => 'gma', 'Glyma.12G072500' => 'gma', 'Glyma.12G085500' => 'gma', 'Glyma.12G181800' => 'gma', 'Glyma.12G193000' => 'gma', 'Glyma.13G309300' => 'gma', 'Glyma.13G319000' => 'gma', 'Glyma.17G012600' => 'gma', 'Gohir.A06G148600' => 'ghi', 'Gohir.A07G115800' => 'ghi', 'Gohir.A08G003600' => 'ghi', 'Gohir.A09G093300' => 'ghi', 'Gohir.A09G105400' => 'ghi', 'Gohir.A09G105500' => 'ghi', 'Gohir.D06G154600' => 'ghi', 'Gohir.D07G120200' => 'ghi', 'Gohir.D08G013900' => 'ghi', 'Gohir.D09G093100' => 'ghi', 'Gohir.D09G102200' => 'ghi', 'Gohir.D09G102300' => 'ghi', 'Gorai.001G129400' => 'gra', 'Gorai.004G008200' => 'gra', 'Gorai.006G109800' => 'gra', 'Gorai.006G119500' => 'gra', 'Gorai.006G121300' => 'gra', 'Gorai.010G180700' => 'gra', 'GSVIVG01012716001' => 'vvi', 'GSVIVG01025118001' => 'vvi', 'GSVIVG01030439001' => 'vvi', 'GSVIVG01031397001' => 'vvi', 'HanXRQChr01g0004201' => 'han', 'HanXRQChr02g0054941' => 'han', 'HanXRQChr05g0141811' => 'han', 'HanXRQChr07g0197751' => 'han', 'HanXRQChr11g0346691' => 'han', 'HanXRQChr13g0396971' => 'han', 'HanXRQChr14g0432951' => 'han', 'HanXRQChr14g0452001' => 'han', 'HanXRQChr15g0496681' => 'han', 'HanXRQChr17g0557491' => 'han', 'HanXRQChr17g0557501' => 'han', 'Haze_06809' => 'cav', 'Haze_12852' => 'cav', 'Haze_15850' => 'cav', 'Haze_23446' => 'cav', 'Haze_23942' => 'cav', 'Haze_23943' => 'cav', 'Hma1.2p1_0091F.1_g046450' => 'hma', 'Hma1.2p1_0128F.1_g059910' => 'hma', 'Hma1.2p1_0249F.1_g102260' => 'hma', 'Hma1.2p1_0453F.1_g156190' => 'hma', 'Hma1.2p1_0695F.1_g204380' => 'hma', 'Hma1.2p1_0749F.1_g212650' => 'hma', 'Hma1.2p1_2156F.1_g315420' => 'hma', 'Hma1.2p1_2686F.1_g326940' => 'hma', 'HPP92_006428' => 'vpl', 'HPP92_012069' => 'vpl', 'HPP92_014129' => 'vpl', 'HPP92_014133' => 'vpl', 'HPP92_017315' => 'vpl', 'HPP92_026445' => 'vpl', 'HPP92_026446' => 'vpl', 'Hund00774' => 'sun', 'Hund07682' => 'sun', 'Hund21413' => 'sun', 'Hund23462' => 'sun', 'Hund23463' => 'sun', 'Lalb_Chr03g0027911' => 'lal', 'Lalb_Chr13g0304271' => 'lal', 'Lalb_Chr19g0137471' => 'lal', 'Lalb_Chr22g0350651' => 'lal', 'Lalb_Chr24g0395151' => 'lal', 'Lj1A1231T40' => 'lonja', 'Lj1A221T48' => 'lonja', 'Lj1C924T12' => 'lonja', 'Lj2C993G6' => 'lonja', 'Lj3g0005790' => 'lja', 'Lj3g0015432' => 'lja', 'Lj3g0017722' => 'lja', 'Lj3g0018497' => 'lja', 'Lj4g0025071' => 'lja', 'Lsat_1_v5_gn_1_129680' => 'lsa', 'Lsat_1_v5_gn_2_25321' => 'lsa', 'Lsat_1_v5_gn_2_95461' => 'lsa', 'Lsat_1_v5_gn_4_159620' => 'lsa', 'Lsat_1_v5_gn_6_41301' => 'lsa', 'Lsat_1_v5_gn_6_74660' => 'lsa', 'Lsat_1_v5_gn_7_11520' => 'lsa', 'Lsat_1_v5_gn_9_67680' => 'lsa', 'Manes.04G008300' => 'mes', 'Manes.04G008400' => 'mes', 'Manes.04G026500' => 'mes', 'Manes.10G135300' => 'mes', 'Manes.11G157300' => 'mes', 'Manes.12G074000' => 'mes', 'Manes.16G006200' => 'mes', 'Manes.17G026400' => 'mes', 'Mapoly0024s0086' => 'mpo', 'Mapoly0024s0087' => 'mpo', 'Mapoly0071s0057' => 'mpo', 'Mapoly0204s0012' => 'mpo', 'MBI04_g37681_MAGBIO' => 'mbi', 'MBI05_g17779_MAGBIO' => 'mbi', 'MBI12_g31184_MAGBIO' => 'mbi', 'MBI17_g11083_MAGBIO' => 'mbi', 'MBI18_g03883_MAGBIO' => 'mbi', 'MBI18_g28940_MAGBIO' => 'mbi', 'MCO01G690' => 'mco', 'MD03G1109900' => 'mdo', 'MD03G1134800' => 'mdo', 'MD05G1348000' => 'mdo', 'MD10G1322400' => 'mdo', 'MD11G1123300' => 'mdo', 'MD11G1157600' => 'mdo', 'Medtr2g084875' => 'mtr', 'Medtr2g088130' => 'mtr', 'Medtr4g055310' => 'mtr', 'Medtr4g061070' => 'mtr', 'Medtr4g132250' => 'mtr', 'MELO3C004795.2' => 'cme', 'MELO3C004797.2' => 'cme', 'MELO3C007396.2' => 'cme', 'MELO3C019277.2' => 'cme', 'MELO3C021449.2' => 'cme', 'MELO3C025736.2' => 'cme', 'Migut.D02175' => 'egut', 'Migut.H01573' => 'egut', 'Migut.M01327' => 'egut', 'Migut.N02513' => 'egut', 'MSTRG.14638' => 'ama', 'MSTRG.18632' => 'ama', 'MSTRG.7203' => 'ama', 'Nitab4.5_0000533g0140' => 'nta', 'Nitab4.5_0000888g0150' => 'nta', 'Nitab4.5_0001453g0040' => 'nta', 'Nitab4.5_0002827g0090' => 'nta', 'Nitab4.5_0003082g0040' => 'nta', 'Nitab4.5_0007799g0040' => 'nta', 'Nitab4.5_0008983g0010' => 'nta', 'Nitab4.5_0009017g0020' => 'nta', 'Nn1g02132' => 'nnu', 'Nn1g03492' => 'nnu', 'Nn1g03493' => 'nnu', 'Nn1g03494' => 'nnu', 'Nn1g07164' => 'nnu', 'Nn1g07291' => 'nnu', 'Nn2g10655' => 'nnu', 'Nn2g11652' => 'nnu', 'Nn2g14008' => 'nnu', 'Nn3g17476' => 'nnu', 'Nn3g17477' => 'nnu', 'Nn4g22370' => 'nnu', 'Nn4g25255' => 'nnu', 'Nn5g27755' => 'nnu', 'Nn6g34260' => 'nnu', 'Nn6g35041' => 'nnu', 'Oeu005924.1' => 'oeu', 'Oeu008383.1' => 'oeu', 'Oeu014928.1' => 'oeu', 'Oeu019889.1' => 'oeu', 'Oeu022271.1' => 'oeu', 'Oeu025271.1' => 'oeu', 'Oeu036302.1' => 'oeu', 'Oeu044100.1' => 'oeu', 'Os01g0528300' => 'osa', 'Os03g0286200' => 'osa', 'Os04g0406600' => 'osa', 'Os07g0512000' => 'osa', 'Os07g0694600' => 'osa', 'Os08g0411000' => 'osa', 'Os09g0565700' => 'osa', 'Os09g0566050' => 'osa', 'Os10g0523700' => 'osa', 'Peaxi162Scf00002g00514' => 'pax', 'Peaxi162Scf00047g01817' => 'pax', 'Peaxi162Scf00114g00001' => 'pax', 'Peaxi162Scf00147g00613' => 'pax', 'Peaxi162Scf00389g00425' => 'pax', 'PGR042G1139' => 'pgr', 'PGR042G3273' => 'pgr', 'PGR102G2180' => 'pgr', 'PGR119G0234' => 'pgr', 'PGR119G0668' => 'pgr', 'PGSC0003DMG400007122' => 'stu', 'PGSC0003DMG400016478' => 'stu', 'PGSC0003DMG400025374' => 'stu', 'PGSC0003DMG400026536' => 'stu', 'Phvul.003G079600' => 'pvu', 'Phvul.005G115600' => 'pvu', 'Phvul.005G127100' => 'pvu', 'Phvul.006G149500' => 'pvu', 'Phvul.006G149600' => 'pvu', 'Phvul.011G071800' => 'pvu', 'Phvul.011G090400' => 'pvu', 'Potri.004G013400' => 'ptr', 'Potri.004G188100' => 'ptr', 'Potri.008G195500' => 'ptr', 'Potri.009G148800' => 'ptr', 'Potri.011G004700' => 'ptr', 'Pp3c17_22810' => 'ppa', 'Pp3c18_4480' => 'ppa', 'Pp3c19_13030' => 'ppa', 'Pp3c1_33620' => 'ppa', 'Pp3c2_9380' => 'ppa', 'PRCOL_00001023' => 'pco', 'Prupe.3G216300' => 'ppe', 'Prupe.4G019500' => 'ppe', 'Prupe.6G092500' => 'ppe', 'Prupe.6G119200' => 'ppe', 'Psat0s1945g0080' => 'psa', 'Psat0s4167g0040' => 'psa', 'Psat1g185800' => 'psa', 'Psat4g006440' => 'psa', 'Psat4g006480' => 'psa', 'Psat4g168120' => 'psa', 'Psat5g255680' => 'psa', 'Psat5g261760' => 'psa', 'Psat7g222120' => 'psa', 'PSO063G7252' => 'pso', 'PSO170G4778' => 'pso', 'PSO210G2249' => 'pso', 'PSO339G2411' => 'pso', 'PSO339G2457' => 'pso', 'PSO339G2854' => 'pso', 'PSO339G4288' => 'pso', 'PSO339G4615' => 'pso', 'PSO384G2796' => 'pso', 'PSO384G2940' => 'pso', 'PSO384G4227' => 'pso', 'PSO478G1425' => 'pso', 'PSO541G3863' => 'pso', 'PSO675G0507' => 'pso', 'PSO782G0338' => 'pso', 'PSO832G0644' => 'pso', 'QL01p013664' => 'qlo', 'QL01p036598' => 'qlo', 'QL05p072984' => 'qlo', 'QL08p005768' => 'qlo', 'QL08p032743' => 'qlo', 'QL93p0073_0439' => 'qlo', 'QL93p0073_0444' => 'qlo', 'RcHm_v2.0_Chr5g0002851' => 'rch', 'RcHm_v2.0_Chr5g0055201' => 'rch', 'RcHm_v2.0_Chr5g0061191' => 'rch', 'RcHm_v2.0_Chr7g0203231' => 'rch', 'Rhsim01G0208100' => 'rsi', 'Rhsim01G0208200' => 'rsi', 'Rhsim02G0106500' => 'rsi', 'Rhsim03G0107900' => 'rsi', 'Rhsim06G0163400' => 'rsi', 'Rhsim13G0105200' => 'rsi', 'Sabra04G0006300' => 'sbr', 'Sabra04G0127000' => 'sbr', 'Sabra08G0148700' => 'sbr', 'Sabra09G0117400' => 'sbr', 'SalBow1G3326' => 'sbo', 'SalBow3G3228' => 'sbo', 'SalBow6G1634' => 'sbo', 'SalBow6G3603' => 'sbo', 'SalBow6G5266' => 'sbo', 'SalBow7G2265' => 'sbo', 'SalBow8G0850' => 'sbo', 'SalBow8G2592' => 'sbo', 'Sc05g0009240' => 'sci', 'Sc12g0002300' => 'sci', 'Sc21g0000100' => 'sci', 'Sc21g0004720' => 'sci', 'Sed0002949' => 'sed', 'Sed0004114' => 'sed', 'Sed0004306' => 'sed', 'Sed0006172' => 'sed', 'Sed0008413' => 'sed', 'Sed0013809' => 'sed', 'Sed0019556' => 'sed', 'SEGI_03570' => 'sgi', 'SEGI_07859' => 'sgi', 'SEGI_15042' => 'sgi', 'SEGI_16263' => 'sgi', 'SEGI_16552' => 'sgi', 'SEGI_24331' => 'sgi', 'SEGI_27316' => 'sgi', 'SEGI_29521' => 'sgi', 'SEGI_41342' => 'sgi', 'SGA_v2.0_scaffold27G11617' => 'sas', 'SGA_v2.0_scaffold316G48428' => 'sas', 'SGA_v2.0_scaffold49G18261' => 'sas', 'SGA_v2.0_scaffold7G03831' => 'sas', 'SGA_v2.0_scaffold93G28359' => 'sas', 'SHI02210' => 'shi', 'SHI06028' => 'shi', 'SHI06321' => 'shi', 'SMO111G0012' => 'smo', 'SMO228G0080' => 'smo', 'SMO356G0756' => 'smo', 'Solyc02g080620.3' => 'sly', 'Solyc06g074530.1' => 'sly', 'Solyc11g066890.1' => 'sly', 'Solyc11g072520.3' => 'sly', 'Sopen02g025330' => 'spe', 'Sopen06g031000' => 'spe', 'Sopen09g008240' => 'spe', 'Sopen09g025210' => 'spe', 'Sopen11g026600' => 'spe', 'Sopen11g030170' => 'spe', 'Sp1g10420' => 'spa', 'Sp3g06570' => 'spa', 'Sp4g10660' => 'spa', 'Sp5g16460' => 'spa', 'Sp6g22710' => 'spa', 'TAR365G0112' => 'tar', 'TAR369G0717' => 'tar', 'TAR374G0976' => 'tar', 'TAR623G1128' => 'tar', 'TAR626G1937' => 'tar', 'TAR627G0123' => 'tar', 'TAR628G0305' => 'tar', 'TAR636G1176' => 'tar', 'TAR636G2442' => 'tar', 'THA.LOC104800556' => 'tha', 'THA.LOC104809501' => 'tha', 'THA.LOC104815126' => 'tha', 'THA.LOC104815732' => 'tha', 'THA.LOC104823528' => 'tha', 'Thecc.02G365600' => 'tca', 'Thecc.06G222300' => 'tca', 'Thecc.09G261800' => 'tca', 'Thecc.09G291400' => 'tca', 'Thhalv10003028m.g' => 'esa', 'Thhalv10007886m.g' => 'esa', 'Thhalv10016085m.g' => 'esa', 'Thhalv10016681m.g' => 'esa', 'Thhalv10020951m.g' => 'esa', 'TPR.G15598' => 'tpr', 'TPR.G29305' => 'tpr', 'TPR.G32395' => 'tpr', 'TPR.G36998' => 'tpr', 'TPR.G4227' => 'tpr', 'TWI18G1433' => 'twi', 'TWI31G0755' => 'twi', 'TWI38G0912' => 'twi', 'TWI75G1097' => 'twi', 'TWI75G1619' => 'twi', 'TWI79G1336' => 'twi', 'unitig_0.g943' => 'ugi', 'unitig_0.g944' => 'ugi', 'unitig_22.g6646' => 'ugi', 'unitig_37.g12681' => 'ugi', 'unitig_8.g3290' => 'ugi', 'vmacro03278' => 'vma', 'vmacro12197' => 'vma', 'vmacro14478' => 'vma', 'vmacro15787' => 'vma', 'vmacro15789' => 'vma', 'vmacro15790' => 'vma', 'vmacro15806' => 'vma', 'vmacro22907' => 'vma', 'vmacro22908' => 'vma', 'vmacro22909' => 'vma', 'vmacro23108' => 'vma', 'VMungo0540G0540' => 'vmu', 'VMungo0540G2468' => 'vmu', 'VMungo1080G0390' => 'vmu', 'VMungo1080G1165' => 'vmu', 'VMungo1127G0170' => 'vmu', 'VMungo1127G2099' => 'vmu', 'VMungo1215G3013' => 'vmu', 'Zm00001eb013110' => 'zma', 'Zm00001eb084260' => 'zma', 'Zm00001eb096110' => 'zma', 'Zm00001eb217510' => 'zma', 'Zm00001eb322550' => 'zma', 'Zm00001eb390770' => 'zma', 'Zm00001eb397170' => 'zma', 'Zm00001eb404610' => 'zma', 'Zm00001eb421790' => 'zma' ), 'gf_id' => 'HOM05D000911', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000911' ), 'data_identifier' => 'HOM05D000911', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000911', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27780' => 'bna', 'A03p35380' => 'bna', 'A04p21160' => 'bna', 'A05p40570' => 'bna', 'A06p26900' => 'bna', 'A08p33230' => 'bna', 'A09p65960' => 'bna', 'A10p18290' => 'bna', 'Aa31LG1G12990' => 'aar', 'Aa31LG1G2980' => 'aar', 'Aa31LG4G14320' => 'aar', 'Aa31LG7G11800' => 'aar', 'Aa31sc36G50' => 'aar', 'Aa31sc36G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3721' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5459' => 'aag', 'Actinidia03028' => 'ach', 'Actinidia03753' => 'ach', 'Actinidia04187' => 'ach', 'Actinidia05509' => 'ach', 'Actinidia24180' => 'ach', 'Actinidia26906' => 'ach', 'Actinidia37097' => 'ach', 'Actinidia38249' => 'ach', 'Ah.01g003470' => 'amhyb', 'Ah.01g004580' => 'amhyb', 'Ah.01g014850' => 'amhyb', 'Ah.01g016830' => 'amhyb', 'Ah.14g088000' => 'amhyb', 'AL1G22980' => 'aly', 'AL3G18990' => 'aly', 'AL4G22440' => 'aly', 'AL4G33180' => 'aly', 'AL5G22920' => 'aly', 'AL6G33660' => 'aly', 'AL8G20720' => 'aly', 'Aqoxy1G00935' => 'aox', 'Aqoxy1G02094' => 'aox', 'Aqoxy2G01239' => 'aox', 'Aqoxy4G01870' => 'aox', 'Aqoxy7G00450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.36ZVTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71EM27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5D6C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH3WRE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3NCM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RIM768' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YB5YRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z36GDV' => 'arhy', 'AT1G08250' => 'ath', 'AT1G11790' => 'ath', 'AT2G27820' => 'ath', 'AT3G07630' => 'ath', 'AT3G44720' => 'ath', 'AT5G22630' => 'ath', 'ATR0693G304' => 'atr', 'ATR0794G109' => 'atr', 'ATR0820G120' => 'atr', 'ATR1159G064' => 'atr', 'Atru.chr10.2239' => 'acertr', 'Atru.chr3.3371' => 'acertr', 'Atru.chr6.3202' => 'acertr', 'AUR62006499' => 'cqu', 'AUR62012718' => 'cqu', 'AUR62021938' => 'cqu', 'AUR62023932' => 'cqu', 'AUR62025034' => 'cqu', 'AUR62025035' => 'cqu', 'AUR62038307' => 'cqu', 'AUR62043466' => 'cqu', 'BcaB02g10748' => 'bca', 'BcaB03g13231' => 'bca', 'BcaB03g14689' => 'bca', 'BcaB05g22716' => 'bca', 'BcaB06g28172' => 'bca', 'BcaB08g36413' => 'bca', 'BcaC01g02186' => 'bca', 'BcaC01g04272' => 'bca', 'BcaC02g08080' => 'bca', 'BcaC02g08227' => 'bca', 'BcaC03g13901' => 'bca', 'BcaC04g19593' => 'bca', 'BcaC04g20874' => 'bca', 'BcaC05g29557' => 'bca', 'BcaC06g35505' => 'bca', 'BcaC07g41954' => 'bca', 'BcaC07g41955' => 'bca', 'BcaC07g41956' => 'bca', 'BcaC07g42519' => 'bca', 'BcaC07g42520' => 'bca', 'BcaC07g42523' => 'bca', 'BcaC07g42524' => 'bca', 'BcaC07g42525' => 'bca', 'BcaC08g47480' => 'bca', 'BcaC08g47481' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00530' => 'bna', 'BolC2t07178H' => 'bol', 'BolC3t16567H' => 'bol', 'BolC4t27234H' => 'bol', 'BolC5t29728H' => 'bol', 'BolC5t34622H' => 'bol', 'BolC6t40321H' => 'bol', 'BolC7t42028H' => 'bol', 'BolC8t49125H' => 'bol', 'BolC8t52538H' => 'bol', 'BolC8t52539H' => 'bol', 'BolC9t56681H' => 'bol', 'BolC9t58266H' => 'bol', 'BolSC21t60294H' => 'bol', 'BraA02t05670Z' => 'bra', 'BraA03t12716Z' => 'bra', 'BraA04t17685Z' => 'bra', 'BraA05t22788Z' => 'bra', 'BraA06t24032Z' => 'bra', 'BraA06t25625Z' => 'bra', 'BraA07t27930Z' => 'bra', 'BraA08t35242Z' => 'bra', 'BraA09t38609Z' => 'bra', 'BraA10t43905Z' => 'bra', 'C02p11060' => 'bna', 'C03p42990' => 'bna', 'C03p67310' => 'bna', 'C04p56990' => 'bna', 'C04p58660' => 'bna', 'C05p09890' => 'bna', 'C05p59680' => 'bna', 'C06p19830' => 'bna', 'C06p53040' => 'bna', 'C07p15230' => 'bna', 'C08p50070' => 'bna', 'C08p50090' => 'bna', 'C09p38330' => 'bna', 'C09p53940' => 'bna', 'CAN.G1014.1' => 'can', 'CAN.G644.30' => 'can', 'CAN.G84.47' => 'can', 'CAN.G919.8' => 'can', 'CANSAT54G0113' => 'cansat', 'CANSAT54G1286' => 'cansat', 'CANSAT64G1020' => 'cansat', 'CARHR008080' => 'chi', 'CARHR008090' => 'chi', 'CARHR012130' => 'chi', 'CARHR038390' => 'chi', 'CARHR082330' => 'chi', 'CARHR120520' => 'chi', 'CARHR151470' => 'chi', 'CARHR190950' => 'chi', 'Carub.0001s0760' => 'cru', 'Carub.0001s1146' => 'cru', 'Carub.0003s0721' => 'cru', 'Carub.0004s0858' => 'cru', 'Carub.0005s1040' => 'cru', 'Carub.0006s2035' => 'cru', 'Carub.0015s0005' => 'cru', 'Ca_01607_v3' => 'car', 'Ca_01677_v3' => 'car', 'Ca_06087_v3' => 'car', 'Ca_19238_v3' => 'car', 'Ca_19373_v3' => 'car', 'Ca_21079_v3' => 'car', 'CBR_g54016' => 'cbr', 'CBR_g54018' => 'cbr', 'CBR_g54020' => 'cbr', 'Cc01_g09780' => 'ccan', 'Cc01_g11680' => 'ccan', 'Cc02_g15610' => 'ccan', 'Cc05_g04350' => 'ccan', 'Cc09_g01580' => 'ccan', 'CDE01G0795' => 'cde', 'CDE02G2024' => 'cde', 'CDE02G2260' => 'cde', 'CDE02G4561' => 'cde', 'CDE05G2733' => 'cde', 'CDE05G3422' => 'cde', 'CDE06G2003' => 'cde', 'CDE08G0576' => 'cde', 'CDE09G0048' => 'cde', 'CDE11G0805' => 'cde', 'Cfa003644' => 'cfa', 'Cfa006290' => 'cfa', 'Cfa010080' => 'cfa', 'Cfa011376' => 'cfa', 'Cfa011576' => 'cfa', 'Cfa011577' => 'cfa', 'Cfa014389' => 'cfa', 'Ciclev10006044m.g' => 'ccl', 'Ciclev10006954m.g' => 'ccl', 'Ciclev10015131m.g' => 'ccl', 'Ciclev10015580m.g' => 'ccl', 'Ciclev10028359m.g' => 'ccl', 'Ciclev10028573m.g' => 'ccl', 'CiPaw.03G159300' => 'cil', 'CiPaw.04G115100' => 'cil', 'CiPaw.09G092800' => 'cil', 'CiPaw.10G071800' => 'cil', 'CiPaw.13G105800' => 'cil', 'CiPaw.13G141000' => 'cil', 'CiPaw.14G103400' => 'cil', 'ClCG01G012700' => 'cla', 'ClCG01G012720' => 'cla', 'ClCG01G021920' => 'cla', 'ClCG02G008870' => 'cla', 'ClCG02G020840' => 'cla', 'ClCG02G021930' => 'cla', 'COL.COLO4_19302' => 'col', 'COL.COLO4_25262' => 'col', 'COL.COLO4_31788' => 'col', 'Cpa.g.c34684' => 'cpa', 'Cpa.g.c36520.1' => 'cpa', 'Cpa.g.c45626' => 'cpa', 'Cpa.g.sc121.17' => 'cpa', 'Cpa.g.sc13.22' => 'cpa', 'Cpa.g.sc87.88' => 'cpa', 'Cre06.g261800' => 'cre', 'CsaV3_1G014500' => 'csa', 'CsaV3_1G014510' => 'csa', 'CsaV3_2G034880' => 'csa', 'CsaV3_6G014760' => 'csa', 'CsaV3_6G021500' => 'csa', 'CsaV3_6G048980' => 'csa', 'CSS0002511' => 'camsi', 'CSS0007556' => 'camsi', 'CSS0008532' => 'camsi', 'CSS0009709' => 'camsi', 'CSS0010486' => 'camsi', 'CSS0016768' => 'camsi', 'CSS0023512' => 'camsi', 'CSS0025341' => 'camsi', 'CSS0027999' => 'camsi', 'CSS0028944' => 'camsi', 'CSS0032292' => 'camsi', 'CSS0032464' => 'camsi', 'CSS0037153' => 'camsi', 'CSS0039256' => 'camsi', 'CSS0048392' => 'camsi', 'CSS0050458' => 'camsi', 'DCAR_004224' => 'dca', 'DCAR_006147' => 'dca', 'DCAR_006465' => 'dca', 'DCAR_008159' => 'dca', 'DCAR_012164' => 'dca', 'DCAR_019764' => 'dca', 'Dinv05418' => 'din', 'Dinv10839' => 'din', 'Dinv12521' => 'din', 'Dinv13900' => 'din', 'Dinv29426' => 'din', 'Duzib150G0263' => 'dzi', 'Duzib168G1178' => 'dzi', 'Duzib168G1924' => 'dzi', 'Duzib170G0299' => 'dzi', 'Duzib170G0813' => 'dzi', 'Duzib235G1128' => 'dzi', 'Duzib248G1060' => 'dzi', 'ECA232G1910' => 'eca', 'ECA233G4621' => 'eca', 'ECA238G1216' => 'eca', 'ECA238G1784' => 'eca', 'ECA248G1242' => 'eca', 'EL10Ac8g20071' => 'bvu', 'EL10Ac9g21086' => 'bvu', 'EL10Ac9g22407' => 'bvu', 'EL10Ac9g22412' => 'bvu', 'Eucgr.A01119' => 'egr', 'Eucgr.E04043' => 'egr', 'Eucgr.J00428' => 'egr', 'Eucgr.J00958' => 'egr', 'FAN11G3091' => 'fan', 'FAN11G3651' => 'fan', 'FAN16G2566' => 'fan', 'FAN21G3155' => 'fan', 'FAN21G3400' => 'fan', 'FAN21G3543' => 'fan', 'FAN25G0234' => 'fan', 'FAN25G1422' => 'fan', 'FAN25G3392' => 'fan', 'FvH4_3g01940' => 'fve', 'FvH4_3g29870' => 'fve', 'FvH4_3g33680' => 'fve', 'Glyma.09G004200' => 'gma', 'Glyma.11G151288' => 'gma', 'Glyma.11G189100' => 'gma', 'Glyma.12G072500' => 'gma', 'Glyma.12G085500' => 'gma', 'Glyma.12G181800' => 'gma', 'Glyma.12G193000' => 'gma', 'Glyma.13G309300' => 'gma', 'Glyma.13G319000' => 'gma', 'Glyma.17G012600' => 'gma', 'Gohir.A06G148600' => 'ghi', 'Gohir.A07G115800' => 'ghi', 'Gohir.A08G003600' => 'ghi', 'Gohir.A09G093300' => 'ghi', 'Gohir.A09G105400' => 'ghi', 'Gohir.A09G105500' => 'ghi', 'Gohir.D06G154600' => 'ghi', 'Gohir.D07G120200' => 'ghi', 'Gohir.D08G013900' => 'ghi', 'Gohir.D09G093100' => 'ghi', 'Gohir.D09G102200' => 'ghi', 'Gohir.D09G102300' => 'ghi', 'Gorai.001G129400' => 'gra', 'Gorai.004G008200' => 'gra', 'Gorai.006G109800' => 'gra', 'Gorai.006G119500' => 'gra', 'Gorai.006G121300' => 'gra', 'Gorai.010G180700' => 'gra', 'GSVIVG01012716001' => 'vvi', 'GSVIVG01025118001' => 'vvi', 'GSVIVG01030439001' => 'vvi', 'GSVIVG01031397001' => 'vvi', 'HanXRQChr01g0004201' => 'han', 'HanXRQChr02g0054941' => 'han', 'HanXRQChr05g0141811' => 'han', 'HanXRQChr07g0197751' => 'han', 'HanXRQChr11g0346691' => 'han', 'HanXRQChr13g0396971' => 'han', 'HanXRQChr14g0432951' => 'han', 'HanXRQChr14g0452001' => 'han', 'HanXRQChr15g0496681' => 'han', 'HanXRQChr17g0557491' => 'han', 'HanXRQChr17g0557501' => 'han', 'Haze_06809' => 'cav', 'Haze_12852' => 'cav', 'Haze_15850' => 'cav', 'Haze_23446' => 'cav', 'Haze_23942' => 'cav', 'Haze_23943' => 'cav', 'Hma1.2p1_0091F.1_g046450' => 'hma', 'Hma1.2p1_0128F.1_g059910' => 'hma', 'Hma1.2p1_0249F.1_g102260' => 'hma', 'Hma1.2p1_0453F.1_g156190' => 'hma', 'Hma1.2p1_0695F.1_g204380' => 'hma', 'Hma1.2p1_0749F.1_g212650' => 'hma', 'Hma1.2p1_2156F.1_g315420' => 'hma', 'Hma1.2p1_2686F.1_g326940' => 'hma', 'HPP92_006428' => 'vpl', 'HPP92_012069' => 'vpl', 'HPP92_014129' => 'vpl', 'HPP92_014133' => 'vpl', 'HPP92_017315' => 'vpl', 'HPP92_026445' => 'vpl', 'HPP92_026446' => 'vpl', 'Hund00774' => 'sun', 'Hund07682' => 'sun', 'Hund21413' => 'sun', 'Hund23462' => 'sun', 'Hund23463' => 'sun', 'Lalb_Chr03g0027911' => 'lal', 'Lalb_Chr13g0304271' => 'lal', 'Lalb_Chr19g0137471' => 'lal', 'Lalb_Chr22g0350651' => 'lal', 'Lalb_Chr24g0395151' => 'lal', 'Lj1A1231T40' => 'lonja', 'Lj1A221T48' => 'lonja', 'Lj1C924T12' => 'lonja', 'Lj2C993G6' => 'lonja', 'Lj3g0005790' => 'lja', 'Lj3g0015432' => 'lja', 'Lj3g0017722' => 'lja', 'Lj3g0018497' => 'lja', 'Lj4g0025071' => 'lja', 'Lsat_1_v5_gn_1_129680' => 'lsa', 'Lsat_1_v5_gn_2_25321' => 'lsa', 'Lsat_1_v5_gn_2_95461' => 'lsa', 'Lsat_1_v5_gn_4_159620' => 'lsa', 'Lsat_1_v5_gn_6_41301' => 'lsa', 'Lsat_1_v5_gn_6_74660' => 'lsa', 'Lsat_1_v5_gn_7_11520' => 'lsa', 'Lsat_1_v5_gn_9_67680' => 'lsa', 'Manes.04G008300' => 'mes', 'Manes.04G008400' => 'mes', 'Manes.04G026500' => 'mes', 'Manes.10G135300' => 'mes', 'Manes.11G157300' => 'mes', 'Manes.12G074000' => 'mes', 'Manes.16G006200' => 'mes', 'Manes.17G026400' => 'mes', 'Mapoly0024s0086' => 'mpo', 'Mapoly0024s0087' => 'mpo', 'Mapoly0071s0057' => 'mpo', 'Mapoly0204s0012' => 'mpo', 'MBI04_g37681_MAGBIO' => 'mbi', 'MBI05_g17779_MAGBIO' => 'mbi', 'MBI12_g31184_MAGBIO' => 'mbi', 'MBI17_g11083_MAGBIO' => 'mbi', 'MBI18_g03883_MAGBIO' => 'mbi', 'MBI18_g28940_MAGBIO' => 'mbi', 'MCO01G690' => 'mco', 'MD03G1109900' => 'mdo', 'MD03G1134800' => 'mdo', 'MD05G1348000' => 'mdo', 'MD10G1322400' => 'mdo', 'MD11G1123300' => 'mdo', 'MD11G1157600' => 'mdo', 'Medtr2g084875' => 'mtr', 'Medtr2g088130' => 'mtr', 'Medtr4g055310' => 'mtr', 'Medtr4g061070' => 'mtr', 'Medtr4g132250' => 'mtr', 'MELO3C004795.2' => 'cme', 'MELO3C004797.2' => 'cme', 'MELO3C007396.2' => 'cme', 'MELO3C019277.2' => 'cme', 'MELO3C021449.2' => 'cme', 'MELO3C025736.2' => 'cme', 'Migut.D02175' => 'egut', 'Migut.H01573' => 'egut', 'Migut.M01327' => 'egut', 'Migut.N02513' => 'egut', 'MSTRG.14638' => 'ama', 'MSTRG.18632' => 'ama', 'MSTRG.7203' => 'ama', 'Nitab4.5_0000533g0140' => 'nta', 'Nitab4.5_0000888g0150' => 'nta', 'Nitab4.5_0001453g0040' => 'nta', 'Nitab4.5_0002827g0090' => 'nta', 'Nitab4.5_0003082g0040' => 'nta', 'Nitab4.5_0007799g0040' => 'nta', 'Nitab4.5_0008983g0010' => 'nta', 'Nitab4.5_0009017g0020' => 'nta', 'Nn1g02132' => 'nnu', 'Nn1g03492' => 'nnu', 'Nn1g03493' => 'nnu', 'Nn1g03494' => 'nnu', 'Nn1g07164' => 'nnu', 'Nn1g07291' => 'nnu', 'Nn2g10655' => 'nnu', 'Nn2g11652' => 'nnu', 'Nn2g14008' => 'nnu', 'Nn3g17476' => 'nnu', 'Nn3g17477' => 'nnu', 'Nn4g22370' => 'nnu', 'Nn4g25255' => 'nnu', 'Nn5g27755' => 'nnu', 'Nn6g34260' => 'nnu', 'Nn6g35041' => 'nnu', 'Oeu005924.1' => 'oeu', 'Oeu008383.1' => 'oeu', 'Oeu014928.1' => 'oeu', 'Oeu019889.1' => 'oeu', 'Oeu022271.1' => 'oeu', 'Oeu025271.1' => 'oeu', 'Oeu036302.1' => 'oeu', 'Oeu044100.1' => 'oeu', 'Os01g0528300' => 'osa', 'Os03g0286200' => 'osa', 'Os04g0406600' => 'osa', 'Os07g0512000' => 'osa', 'Os07g0694600' => 'osa', 'Os08g0411000' => 'osa', 'Os09g0565700' => 'osa', 'Os09g0566050' => 'osa', 'Os10g0523700' => 'osa', 'Peaxi162Scf00002g00514' => 'pax', 'Peaxi162Scf00047g01817' => 'pax', 'Peaxi162Scf00114g00001' => 'pax', 'Peaxi162Scf00147g00613' => 'pax', 'Peaxi162Scf00389g00425' => 'pax', 'PGR042G1139' => 'pgr', 'PGR042G3273' => 'pgr', 'PGR102G2180' => 'pgr', 'PGR119G0234' => 'pgr', 'PGR119G0668' => 'pgr', 'PGSC0003DMG400007122' => 'stu', 'PGSC0003DMG400016478' => 'stu', 'PGSC0003DMG400025374' => 'stu', 'PGSC0003DMG400026536' => 'stu', 'Phvul.003G079600' => 'pvu', 'Phvul.005G115600' => 'pvu', 'Phvul.005G127100' => 'pvu', 'Phvul.006G149500' => 'pvu', 'Phvul.006G149600' => 'pvu', 'Phvul.011G071800' => 'pvu', 'Phvul.011G090400' => 'pvu', 'Potri.004G013400' => 'ptr', 'Potri.004G188100' => 'ptr', 'Potri.008G195500' => 'ptr', 'Potri.009G148800' => 'ptr', 'Potri.011G004700' => 'ptr', 'Pp3c17_22810' => 'ppa', 'Pp3c18_4480' => 'ppa', 'Pp3c19_13030' => 'ppa', 'Pp3c1_33620' => 'ppa', 'Pp3c2_9380' => 'ppa', 'PRCOL_00001023' => 'pco', 'Prupe.3G216300' => 'ppe', 'Prupe.4G019500' => 'ppe', 'Prupe.6G092500' => 'ppe', 'Prupe.6G119200' => 'ppe', 'Psat0s1945g0080' => 'psa', 'Psat0s4167g0040' => 'psa', 'Psat1g185800' => 'psa', 'Psat4g006440' => 'psa', 'Psat4g006480' => 'psa', 'Psat4g168120' => 'psa', 'Psat5g255680' => 'psa', 'Psat5g261760' => 'psa', 'Psat7g222120' => 'psa', 'PSO063G7252' => 'pso', 'PSO170G4778' => 'pso', 'PSO210G2249' => 'pso', 'PSO339G2411' => 'pso', 'PSO339G2457' => 'pso', 'PSO339G2854' => 'pso', 'PSO339G4288' => 'pso', 'PSO339G4615' => 'pso', 'PSO384G2796' => 'pso', 'PSO384G2940' => 'pso', 'PSO384G4227' => 'pso', 'PSO478G1425' => 'pso', 'PSO541G3863' => 'pso', 'PSO675G0507' => 'pso', 'PSO782G0338' => 'pso', 'PSO832G0644' => 'pso', 'QL01p013664' => 'qlo', 'QL01p036598' => 'qlo', 'QL05p072984' => 'qlo', 'QL08p005768' => 'qlo', 'QL08p032743' => 'qlo', 'QL93p0073_0439' => 'qlo', 'QL93p0073_0444' => 'qlo', 'RcHm_v2.0_Chr5g0002851' => 'rch', 'RcHm_v2.0_Chr5g0055201' => 'rch', 'RcHm_v2.0_Chr5g0061191' => 'rch', 'RcHm_v2.0_Chr7g0203231' => 'rch', 'Rhsim01G0208100' => 'rsi', 'Rhsim01G0208200' => 'rsi', 'Rhsim02G0106500' => 'rsi', 'Rhsim03G0107900' => 'rsi', 'Rhsim06G0163400' => 'rsi', 'Rhsim13G0105200' => 'rsi', 'Sabra04G0006300' => 'sbr', 'Sabra04G0127000' => 'sbr', 'Sabra08G0148700' => 'sbr', 'Sabra09G0117400' => 'sbr', 'SalBow1G3326' => 'sbo', 'SalBow3G3228' => 'sbo', 'SalBow6G1634' => 'sbo', 'SalBow6G3603' => 'sbo', 'SalBow6G5266' => 'sbo', 'SalBow7G2265' => 'sbo', 'SalBow8G0850' => 'sbo', 'SalBow8G2592' => 'sbo', 'Sc05g0009240' => 'sci', 'Sc12g0002300' => 'sci', 'Sc21g0000100' => 'sci', 'Sc21g0004720' => 'sci', 'Sed0002949' => 'sed', 'Sed0004114' => 'sed', 'Sed0004306' => 'sed', 'Sed0006172' => 'sed', 'Sed0008413' => 'sed', 'Sed0013809' => 'sed', 'Sed0019556' => 'sed', 'SEGI_03570' => 'sgi', 'SEGI_07859' => 'sgi', 'SEGI_15042' => 'sgi', 'SEGI_16263' => 'sgi', 'SEGI_16552' => 'sgi', 'SEGI_24331' => 'sgi', 'SEGI_27316' => 'sgi', 'SEGI_29521' => 'sgi', 'SEGI_41342' => 'sgi', 'SGA_v2.0_scaffold27G11617' => 'sas', 'SGA_v2.0_scaffold316G48428' => 'sas', 'SGA_v2.0_scaffold49G18261' => 'sas', 'SGA_v2.0_scaffold7G03831' => 'sas', 'SGA_v2.0_scaffold93G28359' => 'sas', 'SHI02210' => 'shi', 'SHI06028' => 'shi', 'SHI06321' => 'shi', 'SMO111G0012' => 'smo', 'SMO228G0080' => 'smo', 'SMO356G0756' => 'smo', 'Solyc02g080620.3' => 'sly', 'Solyc06g074530.1' => 'sly', 'Solyc11g066890.1' => 'sly', 'Solyc11g072520.3' => 'sly', 'Sopen02g025330' => 'spe', 'Sopen06g031000' => 'spe', 'Sopen09g008240' => 'spe', 'Sopen09g025210' => 'spe', 'Sopen11g026600' => 'spe', 'Sopen11g030170' => 'spe', 'Sp1g10420' => 'spa', 'Sp3g06570' => 'spa', 'Sp4g10660' => 'spa', 'Sp5g16460' => 'spa', 'Sp6g22710' => 'spa', 'TAR365G0112' => 'tar', 'TAR369G0717' => 'tar', 'TAR374G0976' => 'tar', 'TAR623G1128' => 'tar', 'TAR626G1937' => 'tar', 'TAR627G0123' => 'tar', 'TAR628G0305' => 'tar', 'TAR636G1176' => 'tar', 'TAR636G2442' => 'tar', 'THA.LOC104800556' => 'tha', 'THA.LOC104809501' => 'tha', 'THA.LOC104815126' => 'tha', 'THA.LOC104815732' => 'tha', 'THA.LOC104823528' => 'tha', 'Thecc.02G365600' => 'tca', 'Thecc.06G222300' => 'tca', 'Thecc.09G261800' => 'tca', 'Thecc.09G291400' => 'tca', 'Thhalv10003028m.g' => 'esa', 'Thhalv10007886m.g' => 'esa', 'Thhalv10016085m.g' => 'esa', 'Thhalv10016681m.g' => 'esa', 'Thhalv10020951m.g' => 'esa', 'TPR.G15598' => 'tpr', 'TPR.G29305' => 'tpr', 'TPR.G32395' => 'tpr', 'TPR.G36998' => 'tpr', 'TPR.G4227' => 'tpr', 'TWI18G1433' => 'twi', 'TWI31G0755' => 'twi', 'TWI38G0912' => 'twi', 'TWI75G1097' => 'twi', 'TWI75G1619' => 'twi', 'TWI79G1336' => 'twi', 'unitig_0.g943' => 'ugi', 'unitig_0.g944' => 'ugi', 'unitig_22.g6646' => 'ugi', 'unitig_37.g12681' => 'ugi', 'unitig_8.g3290' => 'ugi', 'vmacro03278' => 'vma', 'vmacro12197' => 'vma', 'vmacro14478' => 'vma', 'vmacro15787' => 'vma', 'vmacro15789' => 'vma', 'vmacro15790' => 'vma', 'vmacro15806' => 'vma', 'vmacro22907' => 'vma', 'vmacro22908' => 'vma', 'vmacro22909' => 'vma', 'vmacro23108' => 'vma', 'VMungo0540G0540' => 'vmu', 'VMungo0540G2468' => 'vmu', 'VMungo1080G0390' => 'vmu', 'VMungo1080G1165' => 'vmu', 'VMungo1127G0170' => 'vmu', 'VMungo1127G2099' => 'vmu', 'VMungo1215G3013' => 'vmu', 'Zm00001eb013110' => 'zma', 'Zm00001eb084260' => 'zma', 'Zm00001eb096110' => 'zma', 'Zm00001eb217510' => 'zma', 'Zm00001eb322550' => 'zma', 'Zm00001eb390770' => 'zma', 'Zm00001eb397170' => 'zma', 'Zm00001eb404610' => 'zma', 'Zm00001eb421790' => 'zma' ) $gf_id = 'HOM05D000911' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000911' ) $data_identifier = 'HOM05D000911' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 16, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 5, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 6, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 8, 'nnu' => (int) 16, 'oeu' => (int) 8, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 5, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 16, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421790' $species_info = array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ) $local_species = 'shi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000911', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27780' => 'bna', 'A03p35380' => 'bna', 'A04p21160' => 'bna', 'A05p40570' => 'bna', 'A06p26900' => 'bna', 'A08p33230' => 'bna', 'A09p65960' => 'bna', 'A10p18290' => 'bna', 'Aa31LG1G12990' => 'aar', 'Aa31LG1G2980' => 'aar', 'Aa31LG4G14320' => 'aar', 'Aa31LG7G11800' => 'aar', 'Aa31sc36G50' => 'aar', 'Aa31sc36G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3721' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5459' => 'aag', 'Actinidia03028' => 'ach', 'Actinidia03753' => 'ach', 'Actinidia04187' => 'ach', 'Actinidia05509' => 'ach', 'Actinidia24180' => 'ach', 'Actinidia26906' => 'ach', 'Actinidia37097' => 'ach', 'Actinidia38249' => 'ach', 'Ah.01g003470' => 'amhyb', 'Ah.01g004580' => 'amhyb', 'Ah.01g014850' => 'amhyb', 'Ah.01g016830' => 'amhyb', 'Ah.14g088000' => 'amhyb', 'AL1G22980' => 'aly', 'AL3G18990' => 'aly', 'AL4G22440' => 'aly', 'AL4G33180' => 'aly', 'AL5G22920' => 'aly', 'AL6G33660' => 'aly', 'AL8G20720' => 'aly', 'Aqoxy1G00935' => 'aox', 'Aqoxy1G02094' => 'aox', 'Aqoxy2G01239' => 'aox', 'Aqoxy4G01870' => 'aox', 'Aqoxy7G00450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.36ZVTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71EM27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5D6C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH3WRE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3NCM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RIM768' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YB5YRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z36GDV' => 'arhy', 'AT1G08250' => 'ath', 'AT1G11790' => 'ath', 'AT2G27820' => 'ath', 'AT3G07630' => 'ath', 'AT3G44720' => 'ath', 'AT5G22630' => 'ath', 'ATR0693G304' => 'atr', 'ATR0794G109' => 'atr', 'ATR0820G120' => 'atr', 'ATR1159G064' => 'atr', 'Atru.chr10.2239' => 'acertr', 'Atru.chr3.3371' => 'acertr', 'Atru.chr6.3202' => 'acertr', 'AUR62006499' => 'cqu', 'AUR62012718' => 'cqu', 'AUR62021938' => 'cqu', 'AUR62023932' => 'cqu', 'AUR62025034' => 'cqu', 'AUR62025035' => 'cqu', 'AUR62038307' => 'cqu', 'AUR62043466' => 'cqu', 'BcaB02g10748' => 'bca', 'BcaB03g13231' => 'bca', 'BcaB03g14689' => 'bca', 'BcaB05g22716' => 'bca', 'BcaB06g28172' => 'bca', 'BcaB08g36413' => 'bca', 'BcaC01g02186' => 'bca', 'BcaC01g04272' => 'bca', 'BcaC02g08080' => 'bca', 'BcaC02g08227' => 'bca', 'BcaC03g13901' => 'bca', 'BcaC04g19593' => 'bca', 'BcaC04g20874' => 'bca', 'BcaC05g29557' => 'bca', 'BcaC06g35505' => 'bca', 'BcaC07g41954' => 'bca', 'BcaC07g41955' => 'bca', 'BcaC07g41956' => 'bca', 'BcaC07g42519' => 'bca', 'BcaC07g42520' => 'bca', 'BcaC07g42523' => 'bca', 'BcaC07g42524' => 'bca', 'BcaC07g42525' => 'bca', 'BcaC08g47480' => 'bca', 'BcaC08g47481' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00530' => 'bna', 'BolC2t07178H' => 'bol', 'BolC3t16567H' => 'bol', 'BolC4t27234H' => 'bol', 'BolC5t29728H' => 'bol', 'BolC5t34622H' => 'bol', 'BolC6t40321H' => 'bol', 'BolC7t42028H' => 'bol', 'BolC8t49125H' => 'bol', 'BolC8t52538H' => 'bol', 'BolC8t52539H' => 'bol', 'BolC9t56681H' => 'bol', 'BolC9t58266H' => 'bol', 'BolSC21t60294H' => 'bol', 'BraA02t05670Z' => 'bra', 'BraA03t12716Z' => 'bra', 'BraA04t17685Z' => 'bra', 'BraA05t22788Z' => 'bra', 'BraA06t24032Z' => 'bra', 'BraA06t25625Z' => 'bra', 'BraA07t27930Z' => 'bra', 'BraA08t35242Z' => 'bra', 'BraA09t38609Z' => 'bra', 'BraA10t43905Z' => 'bra', 'C02p11060' => 'bna', 'C03p42990' => 'bna', 'C03p67310' => 'bna', 'C04p56990' => 'bna', 'C04p58660' => 'bna', 'C05p09890' => 'bna', 'C05p59680' => 'bna', 'C06p19830' => 'bna', 'C06p53040' => 'bna', 'C07p15230' => 'bna', 'C08p50070' => 'bna', 'C08p50090' => 'bna', 'C09p38330' => 'bna', 'C09p53940' => 'bna', 'CAN.G1014.1' => 'can', 'CAN.G644.30' => 'can', 'CAN.G84.47' => 'can', 'CAN.G919.8' => 'can', 'CANSAT54G0113' => 'cansat', 'CANSAT54G1286' => 'cansat', 'CANSAT64G1020' => 'cansat', 'CARHR008080' => 'chi', 'CARHR008090' => 'chi', 'CARHR012130' => 'chi', 'CARHR038390' => 'chi', 'CARHR082330' => 'chi', 'CARHR120520' => 'chi', 'CARHR151470' => 'chi', 'CARHR190950' => 'chi', 'Carub.0001s0760' => 'cru', 'Carub.0001s1146' => 'cru', 'Carub.0003s0721' => 'cru', 'Carub.0004s0858' => 'cru', 'Carub.0005s1040' => 'cru', 'Carub.0006s2035' => 'cru', 'Carub.0015s0005' => 'cru', 'Ca_01607_v3' => 'car', 'Ca_01677_v3' => 'car', 'Ca_06087_v3' => 'car', 'Ca_19238_v3' => 'car', 'Ca_19373_v3' => 'car', 'Ca_21079_v3' => 'car', 'CBR_g54016' => 'cbr', 'CBR_g54018' => 'cbr', 'CBR_g54020' => 'cbr', 'Cc01_g09780' => 'ccan', 'Cc01_g11680' => 'ccan', 'Cc02_g15610' => 'ccan', 'Cc05_g04350' => 'ccan', 'Cc09_g01580' => 'ccan', 'CDE01G0795' => 'cde', 'CDE02G2024' => 'cde', 'CDE02G2260' => 'cde', 'CDE02G4561' => 'cde', 'CDE05G2733' => 'cde', 'CDE05G3422' => 'cde', 'CDE06G2003' => 'cde', 'CDE08G0576' => 'cde', 'CDE09G0048' => 'cde', 'CDE11G0805' => 'cde', 'Cfa003644' => 'cfa', 'Cfa006290' => 'cfa', 'Cfa010080' => 'cfa', 'Cfa011376' => 'cfa', 'Cfa011576' => 'cfa', 'Cfa011577' => 'cfa', 'Cfa014389' => 'cfa', 'Ciclev10006044m.g' => 'ccl', 'Ciclev10006954m.g' => 'ccl', 'Ciclev10015131m.g' => 'ccl', 'Ciclev10015580m.g' => 'ccl', 'Ciclev10028359m.g' => 'ccl', 'Ciclev10028573m.g' => 'ccl', 'CiPaw.03G159300' => 'cil', 'CiPaw.04G115100' => 'cil', 'CiPaw.09G092800' => 'cil', 'CiPaw.10G071800' => 'cil', 'CiPaw.13G105800' => 'cil', 'CiPaw.13G141000' => 'cil', 'CiPaw.14G103400' => 'cil', 'ClCG01G012700' => 'cla', 'ClCG01G012720' => 'cla', 'ClCG01G021920' => 'cla', 'ClCG02G008870' => 'cla', 'ClCG02G020840' => 'cla', 'ClCG02G021930' => 'cla', 'COL.COLO4_19302' => 'col', 'COL.COLO4_25262' => 'col', 'COL.COLO4_31788' => 'col', 'Cpa.g.c34684' => 'cpa', 'Cpa.g.c36520.1' => 'cpa', 'Cpa.g.c45626' => 'cpa', 'Cpa.g.sc121.17' => 'cpa', 'Cpa.g.sc13.22' => 'cpa', 'Cpa.g.sc87.88' => 'cpa', 'Cre06.g261800' => 'cre', 'CsaV3_1G014500' => 'csa', 'CsaV3_1G014510' => 'csa', 'CsaV3_2G034880' => 'csa', 'CsaV3_6G014760' => 'csa', 'CsaV3_6G021500' => 'csa', 'CsaV3_6G048980' => 'csa', 'CSS0002511' => 'camsi', 'CSS0007556' => 'camsi', 'CSS0008532' => 'camsi', 'CSS0009709' => 'camsi', 'CSS0010486' => 'camsi', 'CSS0016768' => 'camsi', 'CSS0023512' => 'camsi', 'CSS0025341' => 'camsi', 'CSS0027999' => 'camsi', 'CSS0028944' => 'camsi', 'CSS0032292' => 'camsi', 'CSS0032464' => 'camsi', 'CSS0037153' => 'camsi', 'CSS0039256' => 'camsi', 'CSS0048392' => 'camsi', 'CSS0050458' => 'camsi', 'DCAR_004224' => 'dca', 'DCAR_006147' => 'dca', 'DCAR_006465' => 'dca', 'DCAR_008159' => 'dca', 'DCAR_012164' => 'dca', 'DCAR_019764' => 'dca', 'Dinv05418' => 'din', 'Dinv10839' => 'din', 'Dinv12521' => 'din', 'Dinv13900' => 'din', 'Dinv29426' => 'din', 'Duzib150G0263' => 'dzi', 'Duzib168G1178' => 'dzi', 'Duzib168G1924' => 'dzi', 'Duzib170G0299' => 'dzi', 'Duzib170G0813' => 'dzi', 'Duzib235G1128' => 'dzi', 'Duzib248G1060' => 'dzi', 'ECA232G1910' => 'eca', 'ECA233G4621' => 'eca', 'ECA238G1216' => 'eca', 'ECA238G1784' => 'eca', 'ECA248G1242' => 'eca', 'EL10Ac8g20071' => 'bvu', 'EL10Ac9g21086' => 'bvu', 'EL10Ac9g22407' => 'bvu', 'EL10Ac9g22412' => 'bvu', 'Eucgr.A01119' => 'egr', 'Eucgr.E04043' => 'egr', 'Eucgr.J00428' => 'egr', 'Eucgr.J00958' => 'egr', 'FAN11G3091' => 'fan', 'FAN11G3651' => 'fan', 'FAN16G2566' => 'fan', 'FAN21G3155' => 'fan', 'FAN21G3400' => 'fan', 'FAN21G3543' => 'fan', 'FAN25G0234' => 'fan', 'FAN25G1422' => 'fan', 'FAN25G3392' => 'fan', 'FvH4_3g01940' => 'fve', 'FvH4_3g29870' => 'fve', 'FvH4_3g33680' => 'fve', 'Glyma.09G004200' => 'gma', 'Glyma.11G151288' => 'gma', 'Glyma.11G189100' => 'gma', 'Glyma.12G072500' => 'gma', 'Glyma.12G085500' => 'gma', 'Glyma.12G181800' => 'gma', 'Glyma.12G193000' => 'gma', 'Glyma.13G309300' => 'gma', 'Glyma.13G319000' => 'gma', 'Glyma.17G012600' => 'gma', 'Gohir.A06G148600' => 'ghi', 'Gohir.A07G115800' => 'ghi', 'Gohir.A08G003600' => 'ghi', 'Gohir.A09G093300' => 'ghi', 'Gohir.A09G105400' => 'ghi', 'Gohir.A09G105500' => 'ghi', 'Gohir.D06G154600' => 'ghi', 'Gohir.D07G120200' => 'ghi', 'Gohir.D08G013900' => 'ghi', 'Gohir.D09G093100' => 'ghi', 'Gohir.D09G102200' => 'ghi', 'Gohir.D09G102300' => 'ghi', 'Gorai.001G129400' => 'gra', 'Gorai.004G008200' => 'gra', 'Gorai.006G109800' => 'gra', 'Gorai.006G119500' => 'gra', 'Gorai.006G121300' => 'gra', 'Gorai.010G180700' => 'gra', 'GSVIVG01012716001' => 'vvi', 'GSVIVG01025118001' => 'vvi', 'GSVIVG01030439001' => 'vvi', 'GSVIVG01031397001' => 'vvi', 'HanXRQChr01g0004201' => 'han', 'HanXRQChr02g0054941' => 'han', 'HanXRQChr05g0141811' => 'han', 'HanXRQChr07g0197751' => 'han', 'HanXRQChr11g0346691' => 'han', 'HanXRQChr13g0396971' => 'han', 'HanXRQChr14g0432951' => 'han', 'HanXRQChr14g0452001' => 'han', 'HanXRQChr15g0496681' => 'han', 'HanXRQChr17g0557491' => 'han', 'HanXRQChr17g0557501' => 'han', 'Haze_06809' => 'cav', 'Haze_12852' => 'cav', 'Haze_15850' => 'cav', 'Haze_23446' => 'cav', 'Haze_23942' => 'cav', 'Haze_23943' => 'cav', 'Hma1.2p1_0091F.1_g046450' => 'hma', 'Hma1.2p1_0128F.1_g059910' => 'hma', 'Hma1.2p1_0249F.1_g102260' => 'hma', 'Hma1.2p1_0453F.1_g156190' => 'hma', 'Hma1.2p1_0695F.1_g204380' => 'hma', 'Hma1.2p1_0749F.1_g212650' => 'hma', 'Hma1.2p1_2156F.1_g315420' => 'hma', 'Hma1.2p1_2686F.1_g326940' => 'hma', 'HPP92_006428' => 'vpl', 'HPP92_012069' => 'vpl', 'HPP92_014129' => 'vpl', 'HPP92_014133' => 'vpl', 'HPP92_017315' => 'vpl', 'HPP92_026445' => 'vpl', 'HPP92_026446' => 'vpl', 'Hund00774' => 'sun', 'Hund07682' => 'sun', 'Hund21413' => 'sun', 'Hund23462' => 'sun', 'Hund23463' => 'sun', 'Lalb_Chr03g0027911' => 'lal', 'Lalb_Chr13g0304271' => 'lal', 'Lalb_Chr19g0137471' => 'lal', 'Lalb_Chr22g0350651' => 'lal', 'Lalb_Chr24g0395151' => 'lal', 'Lj1A1231T40' => 'lonja', 'Lj1A221T48' => 'lonja', 'Lj1C924T12' => 'lonja', 'Lj2C993G6' => 'lonja', 'Lj3g0005790' => 'lja', 'Lj3g0015432' => 'lja', 'Lj3g0017722' => 'lja', 'Lj3g0018497' => 'lja', 'Lj4g0025071' => 'lja', 'Lsat_1_v5_gn_1_129680' => 'lsa', 'Lsat_1_v5_gn_2_25321' => 'lsa', 'Lsat_1_v5_gn_2_95461' => 'lsa', 'Lsat_1_v5_gn_4_159620' => 'lsa', 'Lsat_1_v5_gn_6_41301' => 'lsa', 'Lsat_1_v5_gn_6_74660' => 'lsa', 'Lsat_1_v5_gn_7_11520' => 'lsa', 'Lsat_1_v5_gn_9_67680' => 'lsa', 'Manes.04G008300' => 'mes', 'Manes.04G008400' => 'mes', 'Manes.04G026500' => 'mes', 'Manes.10G135300' => 'mes', 'Manes.11G157300' => 'mes', 'Manes.12G074000' => 'mes', 'Manes.16G006200' => 'mes', 'Manes.17G026400' => 'mes', 'Mapoly0024s0086' => 'mpo', 'Mapoly0024s0087' => 'mpo', 'Mapoly0071s0057' => 'mpo', 'Mapoly0204s0012' => 'mpo', 'MBI04_g37681_MAGBIO' => 'mbi', 'MBI05_g17779_MAGBIO' => 'mbi', 'MBI12_g31184_MAGBIO' => 'mbi', 'MBI17_g11083_MAGBIO' => 'mbi', 'MBI18_g03883_MAGBIO' => 'mbi', 'MBI18_g28940_MAGBIO' => 'mbi', 'MCO01G690' => 'mco', 'MD03G1109900' => 'mdo', 'MD03G1134800' => 'mdo', 'MD05G1348000' => 'mdo', 'MD10G1322400' => 'mdo', 'MD11G1123300' => 'mdo', 'MD11G1157600' => 'mdo', 'Medtr2g084875' => 'mtr', 'Medtr2g088130' => 'mtr', 'Medtr4g055310' => 'mtr', 'Medtr4g061070' => 'mtr', 'Medtr4g132250' => 'mtr', 'MELO3C004795.2' => 'cme', 'MELO3C004797.2' => 'cme', 'MELO3C007396.2' => 'cme', 'MELO3C019277.2' => 'cme', 'MELO3C021449.2' => 'cme', 'MELO3C025736.2' => 'cme', 'Migut.D02175' => 'egut', 'Migut.H01573' => 'egut', 'Migut.M01327' => 'egut', 'Migut.N02513' => 'egut', 'MSTRG.14638' => 'ama', 'MSTRG.18632' => 'ama', 'MSTRG.7203' => 'ama', 'Nitab4.5_0000533g0140' => 'nta', 'Nitab4.5_0000888g0150' => 'nta', 'Nitab4.5_0001453g0040' => 'nta', 'Nitab4.5_0002827g0090' => 'nta', 'Nitab4.5_0003082g0040' => 'nta', 'Nitab4.5_0007799g0040' => 'nta', 'Nitab4.5_0008983g0010' => 'nta', 'Nitab4.5_0009017g0020' => 'nta', 'Nn1g02132' => 'nnu', 'Nn1g03492' => 'nnu', 'Nn1g03493' => 'nnu', 'Nn1g03494' => 'nnu', 'Nn1g07164' => 'nnu', 'Nn1g07291' => 'nnu', 'Nn2g10655' => 'nnu', 'Nn2g11652' => 'nnu', 'Nn2g14008' => 'nnu', 'Nn3g17476' => 'nnu', 'Nn3g17477' => 'nnu', 'Nn4g22370' => 'nnu', 'Nn4g25255' => 'nnu', 'Nn5g27755' => 'nnu', 'Nn6g34260' => 'nnu', 'Nn6g35041' => 'nnu', 'Oeu005924.1' => 'oeu', 'Oeu008383.1' => 'oeu', 'Oeu014928.1' => 'oeu', 'Oeu019889.1' => 'oeu', 'Oeu022271.1' => 'oeu', 'Oeu025271.1' => 'oeu', 'Oeu036302.1' => 'oeu', 'Oeu044100.1' => 'oeu', 'Os01g0528300' => 'osa', 'Os03g0286200' => 'osa', 'Os04g0406600' => 'osa', 'Os07g0512000' => 'osa', 'Os07g0694600' => 'osa', 'Os08g0411000' => 'osa', 'Os09g0565700' => 'osa', 'Os09g0566050' => 'osa', 'Os10g0523700' => 'osa', 'Peaxi162Scf00002g00514' => 'pax', 'Peaxi162Scf00047g01817' => 'pax', 'Peaxi162Scf00114g00001' => 'pax', 'Peaxi162Scf00147g00613' => 'pax', 'Peaxi162Scf00389g00425' => 'pax', 'PGR042G1139' => 'pgr', 'PGR042G3273' => 'pgr', 'PGR102G2180' => 'pgr', 'PGR119G0234' => 'pgr', 'PGR119G0668' => 'pgr', 'PGSC0003DMG400007122' => 'stu', 'PGSC0003DMG400016478' => 'stu', 'PGSC0003DMG400025374' => 'stu', 'PGSC0003DMG400026536' => 'stu', 'Phvul.003G079600' => 'pvu', 'Phvul.005G115600' => 'pvu', 'Phvul.005G127100' => 'pvu', 'Phvul.006G149500' => 'pvu', 'Phvul.006G149600' => 'pvu', 'Phvul.011G071800' => 'pvu', 'Phvul.011G090400' => 'pvu', 'Potri.004G013400' => 'ptr', 'Potri.004G188100' => 'ptr', 'Potri.008G195500' => 'ptr', 'Potri.009G148800' => 'ptr', 'Potri.011G004700' => 'ptr', 'Pp3c17_22810' => 'ppa', 'Pp3c18_4480' => 'ppa', 'Pp3c19_13030' => 'ppa', 'Pp3c1_33620' => 'ppa', 'Pp3c2_9380' => 'ppa', 'PRCOL_00001023' => 'pco', 'Prupe.3G216300' => 'ppe', 'Prupe.4G019500' => 'ppe', 'Prupe.6G092500' => 'ppe', 'Prupe.6G119200' => 'ppe', 'Psat0s1945g0080' => 'psa', 'Psat0s4167g0040' => 'psa', 'Psat1g185800' => 'psa', 'Psat4g006440' => 'psa', 'Psat4g006480' => 'psa', 'Psat4g168120' => 'psa', 'Psat5g255680' => 'psa', 'Psat5g261760' => 'psa', 'Psat7g222120' => 'psa', 'PSO063G7252' => 'pso', 'PSO170G4778' => 'pso', 'PSO210G2249' => 'pso', 'PSO339G2411' => 'pso', 'PSO339G2457' => 'pso', 'PSO339G2854' => 'pso', 'PSO339G4288' => 'pso', 'PSO339G4615' => 'pso', 'PSO384G2796' => 'pso', 'PSO384G2940' => 'pso', 'PSO384G4227' => 'pso', 'PSO478G1425' => 'pso', 'PSO541G3863' => 'pso', 'PSO675G0507' => 'pso', 'PSO782G0338' => 'pso', 'PSO832G0644' => 'pso', 'QL01p013664' => 'qlo', 'QL01p036598' => 'qlo', 'QL05p072984' => 'qlo', 'QL08p005768' => 'qlo', 'QL08p032743' => 'qlo', 'QL93p0073_0439' => 'qlo', 'QL93p0073_0444' => 'qlo', 'RcHm_v2.0_Chr5g0002851' => 'rch', 'RcHm_v2.0_Chr5g0055201' => 'rch', 'RcHm_v2.0_Chr5g0061191' => 'rch', 'RcHm_v2.0_Chr7g0203231' => 'rch', 'Rhsim01G0208100' => 'rsi', 'Rhsim01G0208200' => 'rsi', 'Rhsim02G0106500' => 'rsi', 'Rhsim03G0107900' => 'rsi', 'Rhsim06G0163400' => 'rsi', 'Rhsim13G0105200' => 'rsi', 'Sabra04G0006300' => 'sbr', 'Sabra04G0127000' => 'sbr', 'Sabra08G0148700' => 'sbr', 'Sabra09G0117400' => 'sbr', 'SalBow1G3326' => 'sbo', 'SalBow3G3228' => 'sbo', 'SalBow6G1634' => 'sbo', 'SalBow6G3603' => 'sbo', 'SalBow6G5266' => 'sbo', 'SalBow7G2265' => 'sbo', 'SalBow8G0850' => 'sbo', 'SalBow8G2592' => 'sbo', 'Sc05g0009240' => 'sci', 'Sc12g0002300' => 'sci', 'Sc21g0000100' => 'sci', 'Sc21g0004720' => 'sci', 'Sed0002949' => 'sed', 'Sed0004114' => 'sed', 'Sed0004306' => 'sed', 'Sed0006172' => 'sed', 'Sed0008413' => 'sed', 'Sed0013809' => 'sed', 'Sed0019556' => 'sed', 'SEGI_03570' => 'sgi', 'SEGI_07859' => 'sgi', 'SEGI_15042' => 'sgi', 'SEGI_16263' => 'sgi', 'SEGI_16552' => 'sgi', 'SEGI_24331' => 'sgi', 'SEGI_27316' => 'sgi', 'SEGI_29521' => 'sgi', 'SEGI_41342' => 'sgi', 'SGA_v2.0_scaffold27G11617' => 'sas', 'SGA_v2.0_scaffold316G48428' => 'sas', 'SGA_v2.0_scaffold49G18261' => 'sas', 'SGA_v2.0_scaffold7G03831' => 'sas', 'SGA_v2.0_scaffold93G28359' => 'sas', 'SHI02210' => 'shi', 'SHI06028' => 'shi', 'SHI06321' => 'shi', 'SMO111G0012' => 'smo', 'SMO228G0080' => 'smo', 'SMO356G0756' => 'smo', 'Solyc02g080620.3' => 'sly', 'Solyc06g074530.1' => 'sly', 'Solyc11g066890.1' => 'sly', 'Solyc11g072520.3' => 'sly', 'Sopen02g025330' => 'spe', 'Sopen06g031000' => 'spe', 'Sopen09g008240' => 'spe', 'Sopen09g025210' => 'spe', 'Sopen11g026600' => 'spe', 'Sopen11g030170' => 'spe', 'Sp1g10420' => 'spa', 'Sp3g06570' => 'spa', 'Sp4g10660' => 'spa', 'Sp5g16460' => 'spa', 'Sp6g22710' => 'spa', 'TAR365G0112' => 'tar', 'TAR369G0717' => 'tar', 'TAR374G0976' => 'tar', 'TAR623G1128' => 'tar', 'TAR626G1937' => 'tar', 'TAR627G0123' => 'tar', 'TAR628G0305' => 'tar', 'TAR636G1176' => 'tar', 'TAR636G2442' => 'tar', 'THA.LOC104800556' => 'tha', 'THA.LOC104809501' => 'tha', 'THA.LOC104815126' => 'tha', 'THA.LOC104815732' => 'tha', 'THA.LOC104823528' => 'tha', 'Thecc.02G365600' => 'tca', 'Thecc.06G222300' => 'tca', 'Thecc.09G261800' => 'tca', 'Thecc.09G291400' => 'tca', 'Thhalv10003028m.g' => 'esa', 'Thhalv10007886m.g' => 'esa', 'Thhalv10016085m.g' => 'esa', 'Thhalv10016681m.g' => 'esa', 'Thhalv10020951m.g' => 'esa', 'TPR.G15598' => 'tpr', 'TPR.G29305' => 'tpr', 'TPR.G32395' => 'tpr', 'TPR.G36998' => 'tpr', 'TPR.G4227' => 'tpr', 'TWI18G1433' => 'twi', 'TWI31G0755' => 'twi', 'TWI38G0912' => 'twi', 'TWI75G1097' => 'twi', 'TWI75G1619' => 'twi', 'TWI79G1336' => 'twi', 'unitig_0.g943' => 'ugi', 'unitig_0.g944' => 'ugi', 'unitig_22.g6646' => 'ugi', 'unitig_37.g12681' => 'ugi', 'unitig_8.g3290' => 'ugi', 'vmacro03278' => 'vma', 'vmacro12197' => 'vma', 'vmacro14478' => 'vma', 'vmacro15787' => 'vma', 'vmacro15789' => 'vma', 'vmacro15790' => 'vma', 'vmacro15806' => 'vma', 'vmacro22907' => 'vma', 'vmacro22908' => 'vma', 'vmacro22909' => 'vma', 'vmacro23108' => 'vma', 'VMungo0540G0540' => 'vmu', 'VMungo0540G2468' => 'vmu', 'VMungo1080G0390' => 'vmu', 'VMungo1080G1165' => 'vmu', 'VMungo1127G0170' => 'vmu', 'VMungo1127G2099' => 'vmu', 'VMungo1215G3013' => 'vmu', 'Zm00001eb013110' => 'zma', 'Zm00001eb084260' => 'zma', 'Zm00001eb096110' => 'zma', 'Zm00001eb217510' => 'zma', 'Zm00001eb322550' => 'zma', 'Zm00001eb390770' => 'zma', 'Zm00001eb397170' => 'zma', 'Zm00001eb404610' => 'zma', 'Zm00001eb421790' => 'zma' ), 'gf_id' => 'HOM05D000911', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000911' ), 'data_identifier' => 'HOM05D000911', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000911', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27780' => 'bna', 'A03p35380' => 'bna', 'A04p21160' => 'bna', 'A05p40570' => 'bna', 'A06p26900' => 'bna', 'A08p33230' => 'bna', 'A09p65960' => 'bna', 'A10p18290' => 'bna', 'Aa31LG1G12990' => 'aar', 'Aa31LG1G2980' => 'aar', 'Aa31LG4G14320' => 'aar', 'Aa31LG7G11800' => 'aar', 'Aa31sc36G50' => 'aar', 'Aa31sc36G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3721' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5459' => 'aag', 'Actinidia03028' => 'ach', 'Actinidia03753' => 'ach', 'Actinidia04187' => 'ach', 'Actinidia05509' => 'ach', 'Actinidia24180' => 'ach', 'Actinidia26906' => 'ach', 'Actinidia37097' => 'ach', 'Actinidia38249' => 'ach', 'Ah.01g003470' => 'amhyb', 'Ah.01g004580' => 'amhyb', 'Ah.01g014850' => 'amhyb', 'Ah.01g016830' => 'amhyb', 'Ah.14g088000' => 'amhyb', 'AL1G22980' => 'aly', 'AL3G18990' => 'aly', 'AL4G22440' => 'aly', 'AL4G33180' => 'aly', 'AL5G22920' => 'aly', 'AL6G33660' => 'aly', 'AL8G20720' => 'aly', 'Aqoxy1G00935' => 'aox', 'Aqoxy1G02094' => 'aox', 'Aqoxy2G01239' => 'aox', 'Aqoxy4G01870' => 'aox', 'Aqoxy7G00450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.36ZVTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71EM27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5D6C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH3WRE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3NCM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RIM768' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YB5YRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z36GDV' => 'arhy', 'AT1G08250' => 'ath', 'AT1G11790' => 'ath', 'AT2G27820' => 'ath', 'AT3G07630' => 'ath', 'AT3G44720' => 'ath', 'AT5G22630' => 'ath', 'ATR0693G304' => 'atr', 'ATR0794G109' => 'atr', 'ATR0820G120' => 'atr', 'ATR1159G064' => 'atr', 'Atru.chr10.2239' => 'acertr', 'Atru.chr3.3371' => 'acertr', 'Atru.chr6.3202' => 'acertr', 'AUR62006499' => 'cqu', 'AUR62012718' => 'cqu', 'AUR62021938' => 'cqu', 'AUR62023932' => 'cqu', 'AUR62025034' => 'cqu', 'AUR62025035' => 'cqu', 'AUR62038307' => 'cqu', 'AUR62043466' => 'cqu', 'BcaB02g10748' => 'bca', 'BcaB03g13231' => 'bca', 'BcaB03g14689' => 'bca', 'BcaB05g22716' => 'bca', 'BcaB06g28172' => 'bca', 'BcaB08g36413' => 'bca', 'BcaC01g02186' => 'bca', 'BcaC01g04272' => 'bca', 'BcaC02g08080' => 'bca', 'BcaC02g08227' => 'bca', 'BcaC03g13901' => 'bca', 'BcaC04g19593' => 'bca', 'BcaC04g20874' => 'bca', 'BcaC05g29557' => 'bca', 'BcaC06g35505' => 'bca', 'BcaC07g41954' => 'bca', 'BcaC07g41955' => 'bca', 'BcaC07g41956' => 'bca', 'BcaC07g42519' => 'bca', 'BcaC07g42520' => 'bca', 'BcaC07g42523' => 'bca', 'BcaC07g42524' => 'bca', 'BcaC07g42525' => 'bca', 'BcaC08g47480' => 'bca', 'BcaC08g47481' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00530' => 'bna', 'BolC2t07178H' => 'bol', 'BolC3t16567H' => 'bol', 'BolC4t27234H' => 'bol', 'BolC5t29728H' => 'bol', 'BolC5t34622H' => 'bol', 'BolC6t40321H' => 'bol', 'BolC7t42028H' => 'bol', 'BolC8t49125H' => 'bol', 'BolC8t52538H' => 'bol', 'BolC8t52539H' => 'bol', 'BolC9t56681H' => 'bol', 'BolC9t58266H' => 'bol', 'BolSC21t60294H' => 'bol', 'BraA02t05670Z' => 'bra', 'BraA03t12716Z' => 'bra', 'BraA04t17685Z' => 'bra', 'BraA05t22788Z' => 'bra', 'BraA06t24032Z' => 'bra', 'BraA06t25625Z' => 'bra', 'BraA07t27930Z' => 'bra', 'BraA08t35242Z' => 'bra', 'BraA09t38609Z' => 'bra', 'BraA10t43905Z' => 'bra', 'C02p11060' => 'bna', 'C03p42990' => 'bna', 'C03p67310' => 'bna', 'C04p56990' => 'bna', 'C04p58660' => 'bna', 'C05p09890' => 'bna', 'C05p59680' => 'bna', 'C06p19830' => 'bna', 'C06p53040' => 'bna', 'C07p15230' => 'bna', 'C08p50070' => 'bna', 'C08p50090' => 'bna', 'C09p38330' => 'bna', 'C09p53940' => 'bna', 'CAN.G1014.1' => 'can', 'CAN.G644.30' => 'can', 'CAN.G84.47' => 'can', 'CAN.G919.8' => 'can', 'CANSAT54G0113' => 'cansat', 'CANSAT54G1286' => 'cansat', 'CANSAT64G1020' => 'cansat', 'CARHR008080' => 'chi', 'CARHR008090' => 'chi', 'CARHR012130' => 'chi', 'CARHR038390' => 'chi', 'CARHR082330' => 'chi', 'CARHR120520' => 'chi', 'CARHR151470' => 'chi', 'CARHR190950' => 'chi', 'Carub.0001s0760' => 'cru', 'Carub.0001s1146' => 'cru', 'Carub.0003s0721' => 'cru', 'Carub.0004s0858' => 'cru', 'Carub.0005s1040' => 'cru', 'Carub.0006s2035' => 'cru', 'Carub.0015s0005' => 'cru', 'Ca_01607_v3' => 'car', 'Ca_01677_v3' => 'car', 'Ca_06087_v3' => 'car', 'Ca_19238_v3' => 'car', 'Ca_19373_v3' => 'car', 'Ca_21079_v3' => 'car', 'CBR_g54016' => 'cbr', 'CBR_g54018' => 'cbr', 'CBR_g54020' => 'cbr', 'Cc01_g09780' => 'ccan', 'Cc01_g11680' => 'ccan', 'Cc02_g15610' => 'ccan', 'Cc05_g04350' => 'ccan', 'Cc09_g01580' => 'ccan', 'CDE01G0795' => 'cde', 'CDE02G2024' => 'cde', 'CDE02G2260' => 'cde', 'CDE02G4561' => 'cde', 'CDE05G2733' => 'cde', 'CDE05G3422' => 'cde', 'CDE06G2003' => 'cde', 'CDE08G0576' => 'cde', 'CDE09G0048' => 'cde', 'CDE11G0805' => 'cde', 'Cfa003644' => 'cfa', 'Cfa006290' => 'cfa', 'Cfa010080' => 'cfa', 'Cfa011376' => 'cfa', 'Cfa011576' => 'cfa', 'Cfa011577' => 'cfa', 'Cfa014389' => 'cfa', 'Ciclev10006044m.g' => 'ccl', 'Ciclev10006954m.g' => 'ccl', 'Ciclev10015131m.g' => 'ccl', 'Ciclev10015580m.g' => 'ccl', 'Ciclev10028359m.g' => 'ccl', 'Ciclev10028573m.g' => 'ccl', 'CiPaw.03G159300' => 'cil', 'CiPaw.04G115100' => 'cil', 'CiPaw.09G092800' => 'cil', 'CiPaw.10G071800' => 'cil', 'CiPaw.13G105800' => 'cil', 'CiPaw.13G141000' => 'cil', 'CiPaw.14G103400' => 'cil', 'ClCG01G012700' => 'cla', 'ClCG01G012720' => 'cla', 'ClCG01G021920' => 'cla', 'ClCG02G008870' => 'cla', 'ClCG02G020840' => 'cla', 'ClCG02G021930' => 'cla', 'COL.COLO4_19302' => 'col', 'COL.COLO4_25262' => 'col', 'COL.COLO4_31788' => 'col', 'Cpa.g.c34684' => 'cpa', 'Cpa.g.c36520.1' => 'cpa', 'Cpa.g.c45626' => 'cpa', 'Cpa.g.sc121.17' => 'cpa', 'Cpa.g.sc13.22' => 'cpa', 'Cpa.g.sc87.88' => 'cpa', 'Cre06.g261800' => 'cre', 'CsaV3_1G014500' => 'csa', 'CsaV3_1G014510' => 'csa', 'CsaV3_2G034880' => 'csa', 'CsaV3_6G014760' => 'csa', 'CsaV3_6G021500' => 'csa', 'CsaV3_6G048980' => 'csa', 'CSS0002511' => 'camsi', 'CSS0007556' => 'camsi', 'CSS0008532' => 'camsi', 'CSS0009709' => 'camsi', 'CSS0010486' => 'camsi', 'CSS0016768' => 'camsi', 'CSS0023512' => 'camsi', 'CSS0025341' => 'camsi', 'CSS0027999' => 'camsi', 'CSS0028944' => 'camsi', 'CSS0032292' => 'camsi', 'CSS0032464' => 'camsi', 'CSS0037153' => 'camsi', 'CSS0039256' => 'camsi', 'CSS0048392' => 'camsi', 'CSS0050458' => 'camsi', 'DCAR_004224' => 'dca', 'DCAR_006147' => 'dca', 'DCAR_006465' => 'dca', 'DCAR_008159' => 'dca', 'DCAR_012164' => 'dca', 'DCAR_019764' => 'dca', 'Dinv05418' => 'din', 'Dinv10839' => 'din', 'Dinv12521' => 'din', 'Dinv13900' => 'din', 'Dinv29426' => 'din', 'Duzib150G0263' => 'dzi', 'Duzib168G1178' => 'dzi', 'Duzib168G1924' => 'dzi', 'Duzib170G0299' => 'dzi', 'Duzib170G0813' => 'dzi', 'Duzib235G1128' => 'dzi', 'Duzib248G1060' => 'dzi', 'ECA232G1910' => 'eca', 'ECA233G4621' => 'eca', 'ECA238G1216' => 'eca', 'ECA238G1784' => 'eca', 'ECA248G1242' => 'eca', 'EL10Ac8g20071' => 'bvu', 'EL10Ac9g21086' => 'bvu', 'EL10Ac9g22407' => 'bvu', 'EL10Ac9g22412' => 'bvu', 'Eucgr.A01119' => 'egr', 'Eucgr.E04043' => 'egr', 'Eucgr.J00428' => 'egr', 'Eucgr.J00958' => 'egr', 'FAN11G3091' => 'fan', 'FAN11G3651' => 'fan', 'FAN16G2566' => 'fan', 'FAN21G3155' => 'fan', 'FAN21G3400' => 'fan', 'FAN21G3543' => 'fan', 'FAN25G0234' => 'fan', 'FAN25G1422' => 'fan', 'FAN25G3392' => 'fan', 'FvH4_3g01940' => 'fve', 'FvH4_3g29870' => 'fve', 'FvH4_3g33680' => 'fve', 'Glyma.09G004200' => 'gma', 'Glyma.11G151288' => 'gma', 'Glyma.11G189100' => 'gma', 'Glyma.12G072500' => 'gma', 'Glyma.12G085500' => 'gma', 'Glyma.12G181800' => 'gma', 'Glyma.12G193000' => 'gma', 'Glyma.13G309300' => 'gma', 'Glyma.13G319000' => 'gma', 'Glyma.17G012600' => 'gma', 'Gohir.A06G148600' => 'ghi', 'Gohir.A07G115800' => 'ghi', 'Gohir.A08G003600' => 'ghi', 'Gohir.A09G093300' => 'ghi', 'Gohir.A09G105400' => 'ghi', 'Gohir.A09G105500' => 'ghi', 'Gohir.D06G154600' => 'ghi', 'Gohir.D07G120200' => 'ghi', 'Gohir.D08G013900' => 'ghi', 'Gohir.D09G093100' => 'ghi', 'Gohir.D09G102200' => 'ghi', 'Gohir.D09G102300' => 'ghi', 'Gorai.001G129400' => 'gra', 'Gorai.004G008200' => 'gra', 'Gorai.006G109800' => 'gra', 'Gorai.006G119500' => 'gra', 'Gorai.006G121300' => 'gra', 'Gorai.010G180700' => 'gra', 'GSVIVG01012716001' => 'vvi', 'GSVIVG01025118001' => 'vvi', 'GSVIVG01030439001' => 'vvi', 'GSVIVG01031397001' => 'vvi', 'HanXRQChr01g0004201' => 'han', 'HanXRQChr02g0054941' => 'han', 'HanXRQChr05g0141811' => 'han', 'HanXRQChr07g0197751' => 'han', 'HanXRQChr11g0346691' => 'han', 'HanXRQChr13g0396971' => 'han', 'HanXRQChr14g0432951' => 'han', 'HanXRQChr14g0452001' => 'han', 'HanXRQChr15g0496681' => 'han', 'HanXRQChr17g0557491' => 'han', 'HanXRQChr17g0557501' => 'han', 'Haze_06809' => 'cav', 'Haze_12852' => 'cav', 'Haze_15850' => 'cav', 'Haze_23446' => 'cav', 'Haze_23942' => 'cav', 'Haze_23943' => 'cav', 'Hma1.2p1_0091F.1_g046450' => 'hma', 'Hma1.2p1_0128F.1_g059910' => 'hma', 'Hma1.2p1_0249F.1_g102260' => 'hma', 'Hma1.2p1_0453F.1_g156190' => 'hma', 'Hma1.2p1_0695F.1_g204380' => 'hma', 'Hma1.2p1_0749F.1_g212650' => 'hma', 'Hma1.2p1_2156F.1_g315420' => 'hma', 'Hma1.2p1_2686F.1_g326940' => 'hma', 'HPP92_006428' => 'vpl', 'HPP92_012069' => 'vpl', 'HPP92_014129' => 'vpl', 'HPP92_014133' => 'vpl', 'HPP92_017315' => 'vpl', 'HPP92_026445' => 'vpl', 'HPP92_026446' => 'vpl', 'Hund00774' => 'sun', 'Hund07682' => 'sun', 'Hund21413' => 'sun', 'Hund23462' => 'sun', 'Hund23463' => 'sun', 'Lalb_Chr03g0027911' => 'lal', 'Lalb_Chr13g0304271' => 'lal', 'Lalb_Chr19g0137471' => 'lal', 'Lalb_Chr22g0350651' => 'lal', 'Lalb_Chr24g0395151' => 'lal', 'Lj1A1231T40' => 'lonja', 'Lj1A221T48' => 'lonja', 'Lj1C924T12' => 'lonja', 'Lj2C993G6' => 'lonja', 'Lj3g0005790' => 'lja', 'Lj3g0015432' => 'lja', 'Lj3g0017722' => 'lja', 'Lj3g0018497' => 'lja', 'Lj4g0025071' => 'lja', 'Lsat_1_v5_gn_1_129680' => 'lsa', 'Lsat_1_v5_gn_2_25321' => 'lsa', 'Lsat_1_v5_gn_2_95461' => 'lsa', 'Lsat_1_v5_gn_4_159620' => 'lsa', 'Lsat_1_v5_gn_6_41301' => 'lsa', 'Lsat_1_v5_gn_6_74660' => 'lsa', 'Lsat_1_v5_gn_7_11520' => 'lsa', 'Lsat_1_v5_gn_9_67680' => 'lsa', 'Manes.04G008300' => 'mes', 'Manes.04G008400' => 'mes', 'Manes.04G026500' => 'mes', 'Manes.10G135300' => 'mes', 'Manes.11G157300' => 'mes', 'Manes.12G074000' => 'mes', 'Manes.16G006200' => 'mes', 'Manes.17G026400' => 'mes', 'Mapoly0024s0086' => 'mpo', 'Mapoly0024s0087' => 'mpo', 'Mapoly0071s0057' => 'mpo', 'Mapoly0204s0012' => 'mpo', 'MBI04_g37681_MAGBIO' => 'mbi', 'MBI05_g17779_MAGBIO' => 'mbi', 'MBI12_g31184_MAGBIO' => 'mbi', 'MBI17_g11083_MAGBIO' => 'mbi', 'MBI18_g03883_MAGBIO' => 'mbi', 'MBI18_g28940_MAGBIO' => 'mbi', 'MCO01G690' => 'mco', 'MD03G1109900' => 'mdo', 'MD03G1134800' => 'mdo', 'MD05G1348000' => 'mdo', 'MD10G1322400' => 'mdo', 'MD11G1123300' => 'mdo', 'MD11G1157600' => 'mdo', 'Medtr2g084875' => 'mtr', 'Medtr2g088130' => 'mtr', 'Medtr4g055310' => 'mtr', 'Medtr4g061070' => 'mtr', 'Medtr4g132250' => 'mtr', 'MELO3C004795.2' => 'cme', 'MELO3C004797.2' => 'cme', 'MELO3C007396.2' => 'cme', 'MELO3C019277.2' => 'cme', 'MELO3C021449.2' => 'cme', 'MELO3C025736.2' => 'cme', 'Migut.D02175' => 'egut', 'Migut.H01573' => 'egut', 'Migut.M01327' => 'egut', 'Migut.N02513' => 'egut', 'MSTRG.14638' => 'ama', 'MSTRG.18632' => 'ama', 'MSTRG.7203' => 'ama', 'Nitab4.5_0000533g0140' => 'nta', 'Nitab4.5_0000888g0150' => 'nta', 'Nitab4.5_0001453g0040' => 'nta', 'Nitab4.5_0002827g0090' => 'nta', 'Nitab4.5_0003082g0040' => 'nta', 'Nitab4.5_0007799g0040' => 'nta', 'Nitab4.5_0008983g0010' => 'nta', 'Nitab4.5_0009017g0020' => 'nta', 'Nn1g02132' => 'nnu', 'Nn1g03492' => 'nnu', 'Nn1g03493' => 'nnu', 'Nn1g03494' => 'nnu', 'Nn1g07164' => 'nnu', 'Nn1g07291' => 'nnu', 'Nn2g10655' => 'nnu', 'Nn2g11652' => 'nnu', 'Nn2g14008' => 'nnu', 'Nn3g17476' => 'nnu', 'Nn3g17477' => 'nnu', 'Nn4g22370' => 'nnu', 'Nn4g25255' => 'nnu', 'Nn5g27755' => 'nnu', 'Nn6g34260' => 'nnu', 'Nn6g35041' => 'nnu', 'Oeu005924.1' => 'oeu', 'Oeu008383.1' => 'oeu', 'Oeu014928.1' => 'oeu', 'Oeu019889.1' => 'oeu', 'Oeu022271.1' => 'oeu', 'Oeu025271.1' => 'oeu', 'Oeu036302.1' => 'oeu', 'Oeu044100.1' => 'oeu', 'Os01g0528300' => 'osa', 'Os03g0286200' => 'osa', 'Os04g0406600' => 'osa', 'Os07g0512000' => 'osa', 'Os07g0694600' => 'osa', 'Os08g0411000' => 'osa', 'Os09g0565700' => 'osa', 'Os09g0566050' => 'osa', 'Os10g0523700' => 'osa', 'Peaxi162Scf00002g00514' => 'pax', 'Peaxi162Scf00047g01817' => 'pax', 'Peaxi162Scf00114g00001' => 'pax', 'Peaxi162Scf00147g00613' => 'pax', 'Peaxi162Scf00389g00425' => 'pax', 'PGR042G1139' => 'pgr', 'PGR042G3273' => 'pgr', 'PGR102G2180' => 'pgr', 'PGR119G0234' => 'pgr', 'PGR119G0668' => 'pgr', 'PGSC0003DMG400007122' => 'stu', 'PGSC0003DMG400016478' => 'stu', 'PGSC0003DMG400025374' => 'stu', 'PGSC0003DMG400026536' => 'stu', 'Phvul.003G079600' => 'pvu', 'Phvul.005G115600' => 'pvu', 'Phvul.005G127100' => 'pvu', 'Phvul.006G149500' => 'pvu', 'Phvul.006G149600' => 'pvu', 'Phvul.011G071800' => 'pvu', 'Phvul.011G090400' => 'pvu', 'Potri.004G013400' => 'ptr', 'Potri.004G188100' => 'ptr', 'Potri.008G195500' => 'ptr', 'Potri.009G148800' => 'ptr', 'Potri.011G004700' => 'ptr', 'Pp3c17_22810' => 'ppa', 'Pp3c18_4480' => 'ppa', 'Pp3c19_13030' => 'ppa', 'Pp3c1_33620' => 'ppa', 'Pp3c2_9380' => 'ppa', 'PRCOL_00001023' => 'pco', 'Prupe.3G216300' => 'ppe', 'Prupe.4G019500' => 'ppe', 'Prupe.6G092500' => 'ppe', 'Prupe.6G119200' => 'ppe', 'Psat0s1945g0080' => 'psa', 'Psat0s4167g0040' => 'psa', 'Psat1g185800' => 'psa', 'Psat4g006440' => 'psa', 'Psat4g006480' => 'psa', 'Psat4g168120' => 'psa', 'Psat5g255680' => 'psa', 'Psat5g261760' => 'psa', 'Psat7g222120' => 'psa', 'PSO063G7252' => 'pso', 'PSO170G4778' => 'pso', 'PSO210G2249' => 'pso', 'PSO339G2411' => 'pso', 'PSO339G2457' => 'pso', 'PSO339G2854' => 'pso', 'PSO339G4288' => 'pso', 'PSO339G4615' => 'pso', 'PSO384G2796' => 'pso', 'PSO384G2940' => 'pso', 'PSO384G4227' => 'pso', 'PSO478G1425' => 'pso', 'PSO541G3863' => 'pso', 'PSO675G0507' => 'pso', 'PSO782G0338' => 'pso', 'PSO832G0644' => 'pso', 'QL01p013664' => 'qlo', 'QL01p036598' => 'qlo', 'QL05p072984' => 'qlo', 'QL08p005768' => 'qlo', 'QL08p032743' => 'qlo', 'QL93p0073_0439' => 'qlo', 'QL93p0073_0444' => 'qlo', 'RcHm_v2.0_Chr5g0002851' => 'rch', 'RcHm_v2.0_Chr5g0055201' => 'rch', 'RcHm_v2.0_Chr5g0061191' => 'rch', 'RcHm_v2.0_Chr7g0203231' => 'rch', 'Rhsim01G0208100' => 'rsi', 'Rhsim01G0208200' => 'rsi', 'Rhsim02G0106500' => 'rsi', 'Rhsim03G0107900' => 'rsi', 'Rhsim06G0163400' => 'rsi', 'Rhsim13G0105200' => 'rsi', 'Sabra04G0006300' => 'sbr', 'Sabra04G0127000' => 'sbr', 'Sabra08G0148700' => 'sbr', 'Sabra09G0117400' => 'sbr', 'SalBow1G3326' => 'sbo', 'SalBow3G3228' => 'sbo', 'SalBow6G1634' => 'sbo', 'SalBow6G3603' => 'sbo', 'SalBow6G5266' => 'sbo', 'SalBow7G2265' => 'sbo', 'SalBow8G0850' => 'sbo', 'SalBow8G2592' => 'sbo', 'Sc05g0009240' => 'sci', 'Sc12g0002300' => 'sci', 'Sc21g0000100' => 'sci', 'Sc21g0004720' => 'sci', 'Sed0002949' => 'sed', 'Sed0004114' => 'sed', 'Sed0004306' => 'sed', 'Sed0006172' => 'sed', 'Sed0008413' => 'sed', 'Sed0013809' => 'sed', 'Sed0019556' => 'sed', 'SEGI_03570' => 'sgi', 'SEGI_07859' => 'sgi', 'SEGI_15042' => 'sgi', 'SEGI_16263' => 'sgi', 'SEGI_16552' => 'sgi', 'SEGI_24331' => 'sgi', 'SEGI_27316' => 'sgi', 'SEGI_29521' => 'sgi', 'SEGI_41342' => 'sgi', 'SGA_v2.0_scaffold27G11617' => 'sas', 'SGA_v2.0_scaffold316G48428' => 'sas', 'SGA_v2.0_scaffold49G18261' => 'sas', 'SGA_v2.0_scaffold7G03831' => 'sas', 'SGA_v2.0_scaffold93G28359' => 'sas', 'SHI02210' => 'shi', 'SHI06028' => 'shi', 'SHI06321' => 'shi', 'SMO111G0012' => 'smo', 'SMO228G0080' => 'smo', 'SMO356G0756' => 'smo', 'Solyc02g080620.3' => 'sly', 'Solyc06g074530.1' => 'sly', 'Solyc11g066890.1' => 'sly', 'Solyc11g072520.3' => 'sly', 'Sopen02g025330' => 'spe', 'Sopen06g031000' => 'spe', 'Sopen09g008240' => 'spe', 'Sopen09g025210' => 'spe', 'Sopen11g026600' => 'spe', 'Sopen11g030170' => 'spe', 'Sp1g10420' => 'spa', 'Sp3g06570' => 'spa', 'Sp4g10660' => 'spa', 'Sp5g16460' => 'spa', 'Sp6g22710' => 'spa', 'TAR365G0112' => 'tar', 'TAR369G0717' => 'tar', 'TAR374G0976' => 'tar', 'TAR623G1128' => 'tar', 'TAR626G1937' => 'tar', 'TAR627G0123' => 'tar', 'TAR628G0305' => 'tar', 'TAR636G1176' => 'tar', 'TAR636G2442' => 'tar', 'THA.LOC104800556' => 'tha', 'THA.LOC104809501' => 'tha', 'THA.LOC104815126' => 'tha', 'THA.LOC104815732' => 'tha', 'THA.LOC104823528' => 'tha', 'Thecc.02G365600' => 'tca', 'Thecc.06G222300' => 'tca', 'Thecc.09G261800' => 'tca', 'Thecc.09G291400' => 'tca', 'Thhalv10003028m.g' => 'esa', 'Thhalv10007886m.g' => 'esa', 'Thhalv10016085m.g' => 'esa', 'Thhalv10016681m.g' => 'esa', 'Thhalv10020951m.g' => 'esa', 'TPR.G15598' => 'tpr', 'TPR.G29305' => 'tpr', 'TPR.G32395' => 'tpr', 'TPR.G36998' => 'tpr', 'TPR.G4227' => 'tpr', 'TWI18G1433' => 'twi', 'TWI31G0755' => 'twi', 'TWI38G0912' => 'twi', 'TWI75G1097' => 'twi', 'TWI75G1619' => 'twi', 'TWI79G1336' => 'twi', 'unitig_0.g943' => 'ugi', 'unitig_0.g944' => 'ugi', 'unitig_22.g6646' => 'ugi', 'unitig_37.g12681' => 'ugi', 'unitig_8.g3290' => 'ugi', 'vmacro03278' => 'vma', 'vmacro12197' => 'vma', 'vmacro14478' => 'vma', 'vmacro15787' => 'vma', 'vmacro15789' => 'vma', 'vmacro15790' => 'vma', 'vmacro15806' => 'vma', 'vmacro22907' => 'vma', 'vmacro22908' => 'vma', 'vmacro22909' => 'vma', 'vmacro23108' => 'vma', 'VMungo0540G0540' => 'vmu', 'VMungo0540G2468' => 'vmu', 'VMungo1080G0390' => 'vmu', 'VMungo1080G1165' => 'vmu', 'VMungo1127G0170' => 'vmu', 'VMungo1127G2099' => 'vmu', 'VMungo1215G3013' => 'vmu', 'Zm00001eb013110' => 'zma', 'Zm00001eb084260' => 'zma', 'Zm00001eb096110' => 'zma', 'Zm00001eb217510' => 'zma', 'Zm00001eb322550' => 'zma', 'Zm00001eb390770' => 'zma', 'Zm00001eb397170' => 'zma', 'Zm00001eb404610' => 'zma', 'Zm00001eb421790' => 'zma' ) $gf_id = 'HOM05D000911' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000911' ) $data_identifier = 'HOM05D000911' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 16, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 5, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 6, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 8, 'nnu' => (int) 16, 'oeu' => (int) 8, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 5, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 16, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421790' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000911', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27780' => 'bna', 'A03p35380' => 'bna', 'A04p21160' => 'bna', 'A05p40570' => 'bna', 'A06p26900' => 'bna', 'A08p33230' => 'bna', 'A09p65960' => 'bna', 'A10p18290' => 'bna', 'Aa31LG1G12990' => 'aar', 'Aa31LG1G2980' => 'aar', 'Aa31LG4G14320' => 'aar', 'Aa31LG7G11800' => 'aar', 'Aa31sc36G50' => 'aar', 'Aa31sc36G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3721' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5459' => 'aag', 'Actinidia03028' => 'ach', 'Actinidia03753' => 'ach', 'Actinidia04187' => 'ach', 'Actinidia05509' => 'ach', 'Actinidia24180' => 'ach', 'Actinidia26906' => 'ach', 'Actinidia37097' => 'ach', 'Actinidia38249' => 'ach', 'Ah.01g003470' => 'amhyb', 'Ah.01g004580' => 'amhyb', 'Ah.01g014850' => 'amhyb', 'Ah.01g016830' => 'amhyb', 'Ah.14g088000' => 'amhyb', 'AL1G22980' => 'aly', 'AL3G18990' => 'aly', 'AL4G22440' => 'aly', 'AL4G33180' => 'aly', 'AL5G22920' => 'aly', 'AL6G33660' => 'aly', 'AL8G20720' => 'aly', 'Aqoxy1G00935' => 'aox', 'Aqoxy1G02094' => 'aox', 'Aqoxy2G01239' => 'aox', 'Aqoxy4G01870' => 'aox', 'Aqoxy7G00450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.36ZVTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71EM27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5D6C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH3WRE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3NCM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RIM768' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YB5YRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z36GDV' => 'arhy', 'AT1G08250' => 'ath', 'AT1G11790' => 'ath', 'AT2G27820' => 'ath', 'AT3G07630' => 'ath', 'AT3G44720' => 'ath', 'AT5G22630' => 'ath', 'ATR0693G304' => 'atr', 'ATR0794G109' => 'atr', 'ATR0820G120' => 'atr', 'ATR1159G064' => 'atr', 'Atru.chr10.2239' => 'acertr', 'Atru.chr3.3371' => 'acertr', 'Atru.chr6.3202' => 'acertr', 'AUR62006499' => 'cqu', 'AUR62012718' => 'cqu', 'AUR62021938' => 'cqu', 'AUR62023932' => 'cqu', 'AUR62025034' => 'cqu', 'AUR62025035' => 'cqu', 'AUR62038307' => 'cqu', 'AUR62043466' => 'cqu', 'BcaB02g10748' => 'bca', 'BcaB03g13231' => 'bca', 'BcaB03g14689' => 'bca', 'BcaB05g22716' => 'bca', 'BcaB06g28172' => 'bca', 'BcaB08g36413' => 'bca', 'BcaC01g02186' => 'bca', 'BcaC01g04272' => 'bca', 'BcaC02g08080' => 'bca', 'BcaC02g08227' => 'bca', 'BcaC03g13901' => 'bca', 'BcaC04g19593' => 'bca', 'BcaC04g20874' => 'bca', 'BcaC05g29557' => 'bca', 'BcaC06g35505' => 'bca', 'BcaC07g41954' => 'bca', 'BcaC07g41955' => 'bca', 'BcaC07g41956' => 'bca', 'BcaC07g42519' => 'bca', 'BcaC07g42520' => 'bca', 'BcaC07g42523' => 'bca', 'BcaC07g42524' => 'bca', 'BcaC07g42525' => 'bca', 'BcaC08g47480' => 'bca', 'BcaC08g47481' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00530' => 'bna', 'BolC2t07178H' => 'bol', 'BolC3t16567H' => 'bol', 'BolC4t27234H' => 'bol', 'BolC5t29728H' => 'bol', 'BolC5t34622H' => 'bol', 'BolC6t40321H' => 'bol', 'BolC7t42028H' => 'bol', 'BolC8t49125H' => 'bol', 'BolC8t52538H' => 'bol', 'BolC8t52539H' => 'bol', 'BolC9t56681H' => 'bol', 'BolC9t58266H' => 'bol', 'BolSC21t60294H' => 'bol', 'BraA02t05670Z' => 'bra', 'BraA03t12716Z' => 'bra', 'BraA04t17685Z' => 'bra', 'BraA05t22788Z' => 'bra', 'BraA06t24032Z' => 'bra', 'BraA06t25625Z' => 'bra', 'BraA07t27930Z' => 'bra', 'BraA08t35242Z' => 'bra', 'BraA09t38609Z' => 'bra', 'BraA10t43905Z' => 'bra', 'C02p11060' => 'bna', 'C03p42990' => 'bna', 'C03p67310' => 'bna', 'C04p56990' => 'bna', 'C04p58660' => 'bna', 'C05p09890' => 'bna', 'C05p59680' => 'bna', 'C06p19830' => 'bna', 'C06p53040' => 'bna', 'C07p15230' => 'bna', 'C08p50070' => 'bna', 'C08p50090' => 'bna', 'C09p38330' => 'bna', 'C09p53940' => 'bna', 'CAN.G1014.1' => 'can', 'CAN.G644.30' => 'can', 'CAN.G84.47' => 'can', 'CAN.G919.8' => 'can', 'CANSAT54G0113' => 'cansat', 'CANSAT54G1286' => 'cansat', 'CANSAT64G1020' => 'cansat', 'CARHR008080' => 'chi', 'CARHR008090' => 'chi', 'CARHR012130' => 'chi', 'CARHR038390' => 'chi', 'CARHR082330' => 'chi', 'CARHR120520' => 'chi', 'CARHR151470' => 'chi', 'CARHR190950' => 'chi', 'Carub.0001s0760' => 'cru', 'Carub.0001s1146' => 'cru', 'Carub.0003s0721' => 'cru', 'Carub.0004s0858' => 'cru', 'Carub.0005s1040' => 'cru', 'Carub.0006s2035' => 'cru', 'Carub.0015s0005' => 'cru', 'Ca_01607_v3' => 'car', 'Ca_01677_v3' => 'car', 'Ca_06087_v3' => 'car', 'Ca_19238_v3' => 'car', 'Ca_19373_v3' => 'car', 'Ca_21079_v3' => 'car', 'CBR_g54016' => 'cbr', 'CBR_g54018' => 'cbr', 'CBR_g54020' => 'cbr', 'Cc01_g09780' => 'ccan', 'Cc01_g11680' => 'ccan', 'Cc02_g15610' => 'ccan', 'Cc05_g04350' => 'ccan', 'Cc09_g01580' => 'ccan', 'CDE01G0795' => 'cde', 'CDE02G2024' => 'cde', 'CDE02G2260' => 'cde', 'CDE02G4561' => 'cde', 'CDE05G2733' => 'cde', 'CDE05G3422' => 'cde', 'CDE06G2003' => 'cde', 'CDE08G0576' => 'cde', 'CDE09G0048' => 'cde', 'CDE11G0805' => 'cde', 'Cfa003644' => 'cfa', 'Cfa006290' => 'cfa', 'Cfa010080' => 'cfa', 'Cfa011376' => 'cfa', 'Cfa011576' => 'cfa', 'Cfa011577' => 'cfa', 'Cfa014389' => 'cfa', 'Ciclev10006044m.g' => 'ccl', 'Ciclev10006954m.g' => 'ccl', 'Ciclev10015131m.g' => 'ccl', 'Ciclev10015580m.g' => 'ccl', 'Ciclev10028359m.g' => 'ccl', 'Ciclev10028573m.g' => 'ccl', 'CiPaw.03G159300' => 'cil', 'CiPaw.04G115100' => 'cil', 'CiPaw.09G092800' => 'cil', 'CiPaw.10G071800' => 'cil', 'CiPaw.13G105800' => 'cil', 'CiPaw.13G141000' => 'cil', 'CiPaw.14G103400' => 'cil', 'ClCG01G012700' => 'cla', 'ClCG01G012720' => 'cla', 'ClCG01G021920' => 'cla', 'ClCG02G008870' => 'cla', 'ClCG02G020840' => 'cla', 'ClCG02G021930' => 'cla', 'COL.COLO4_19302' => 'col', 'COL.COLO4_25262' => 'col', 'COL.COLO4_31788' => 'col', 'Cpa.g.c34684' => 'cpa', 'Cpa.g.c36520.1' => 'cpa', 'Cpa.g.c45626' => 'cpa', 'Cpa.g.sc121.17' => 'cpa', 'Cpa.g.sc13.22' => 'cpa', 'Cpa.g.sc87.88' => 'cpa', 'Cre06.g261800' => 'cre', 'CsaV3_1G014500' => 'csa', 'CsaV3_1G014510' => 'csa', 'CsaV3_2G034880' => 'csa', 'CsaV3_6G014760' => 'csa', 'CsaV3_6G021500' => 'csa', 'CsaV3_6G048980' => 'csa', 'CSS0002511' => 'camsi', 'CSS0007556' => 'camsi', 'CSS0008532' => 'camsi', 'CSS0009709' => 'camsi', 'CSS0010486' => 'camsi', 'CSS0016768' => 'camsi', 'CSS0023512' => 'camsi', 'CSS0025341' => 'camsi', 'CSS0027999' => 'camsi', 'CSS0028944' => 'camsi', 'CSS0032292' => 'camsi', 'CSS0032464' => 'camsi', 'CSS0037153' => 'camsi', 'CSS0039256' => 'camsi', 'CSS0048392' => 'camsi', 'CSS0050458' => 'camsi', 'DCAR_004224' => 'dca', 'DCAR_006147' => 'dca', 'DCAR_006465' => 'dca', 'DCAR_008159' => 'dca', 'DCAR_012164' => 'dca', 'DCAR_019764' => 'dca', 'Dinv05418' => 'din', 'Dinv10839' => 'din', 'Dinv12521' => 'din', 'Dinv13900' => 'din', 'Dinv29426' => 'din', 'Duzib150G0263' => 'dzi', 'Duzib168G1178' => 'dzi', 'Duzib168G1924' => 'dzi', 'Duzib170G0299' => 'dzi', 'Duzib170G0813' => 'dzi', 'Duzib235G1128' => 'dzi', 'Duzib248G1060' => 'dzi', 'ECA232G1910' => 'eca', 'ECA233G4621' => 'eca', 'ECA238G1216' => 'eca', 'ECA238G1784' => 'eca', 'ECA248G1242' => 'eca', 'EL10Ac8g20071' => 'bvu', 'EL10Ac9g21086' => 'bvu', 'EL10Ac9g22407' => 'bvu', 'EL10Ac9g22412' => 'bvu', 'Eucgr.A01119' => 'egr', 'Eucgr.E04043' => 'egr', 'Eucgr.J00428' => 'egr', 'Eucgr.J00958' => 'egr', 'FAN11G3091' => 'fan', 'FAN11G3651' => 'fan', 'FAN16G2566' => 'fan', 'FAN21G3155' => 'fan', 'FAN21G3400' => 'fan', 'FAN21G3543' => 'fan', 'FAN25G0234' => 'fan', 'FAN25G1422' => 'fan', 'FAN25G3392' => 'fan', 'FvH4_3g01940' => 'fve', 'FvH4_3g29870' => 'fve', 'FvH4_3g33680' => 'fve', 'Glyma.09G004200' => 'gma', 'Glyma.11G151288' => 'gma', 'Glyma.11G189100' => 'gma', 'Glyma.12G072500' => 'gma', 'Glyma.12G085500' => 'gma', 'Glyma.12G181800' => 'gma', 'Glyma.12G193000' => 'gma', 'Glyma.13G309300' => 'gma', 'Glyma.13G319000' => 'gma', 'Glyma.17G012600' => 'gma', 'Gohir.A06G148600' => 'ghi', 'Gohir.A07G115800' => 'ghi', 'Gohir.A08G003600' => 'ghi', 'Gohir.A09G093300' => 'ghi', 'Gohir.A09G105400' => 'ghi', 'Gohir.A09G105500' => 'ghi', 'Gohir.D06G154600' => 'ghi', 'Gohir.D07G120200' => 'ghi', 'Gohir.D08G013900' => 'ghi', 'Gohir.D09G093100' => 'ghi', 'Gohir.D09G102200' => 'ghi', 'Gohir.D09G102300' => 'ghi', 'Gorai.001G129400' => 'gra', 'Gorai.004G008200' => 'gra', 'Gorai.006G109800' => 'gra', 'Gorai.006G119500' => 'gra', 'Gorai.006G121300' => 'gra', 'Gorai.010G180700' => 'gra', 'GSVIVG01012716001' => 'vvi', 'GSVIVG01025118001' => 'vvi', 'GSVIVG01030439001' => 'vvi', 'GSVIVG01031397001' => 'vvi', 'HanXRQChr01g0004201' => 'han', 'HanXRQChr02g0054941' => 'han', 'HanXRQChr05g0141811' => 'han', 'HanXRQChr07g0197751' => 'han', 'HanXRQChr11g0346691' => 'han', 'HanXRQChr13g0396971' => 'han', 'HanXRQChr14g0432951' => 'han', 'HanXRQChr14g0452001' => 'han', 'HanXRQChr15g0496681' => 'han', 'HanXRQChr17g0557491' => 'han', 'HanXRQChr17g0557501' => 'han', 'Haze_06809' => 'cav', 'Haze_12852' => 'cav', 'Haze_15850' => 'cav', 'Haze_23446' => 'cav', 'Haze_23942' => 'cav', 'Haze_23943' => 'cav', 'Hma1.2p1_0091F.1_g046450' => 'hma', 'Hma1.2p1_0128F.1_g059910' => 'hma', 'Hma1.2p1_0249F.1_g102260' => 'hma', 'Hma1.2p1_0453F.1_g156190' => 'hma', 'Hma1.2p1_0695F.1_g204380' => 'hma', 'Hma1.2p1_0749F.1_g212650' => 'hma', 'Hma1.2p1_2156F.1_g315420' => 'hma', 'Hma1.2p1_2686F.1_g326940' => 'hma', 'HPP92_006428' => 'vpl', 'HPP92_012069' => 'vpl', 'HPP92_014129' => 'vpl', 'HPP92_014133' => 'vpl', 'HPP92_017315' => 'vpl', 'HPP92_026445' => 'vpl', 'HPP92_026446' => 'vpl', 'Hund00774' => 'sun', 'Hund07682' => 'sun', 'Hund21413' => 'sun', 'Hund23462' => 'sun', 'Hund23463' => 'sun', 'Lalb_Chr03g0027911' => 'lal', 'Lalb_Chr13g0304271' => 'lal', 'Lalb_Chr19g0137471' => 'lal', 'Lalb_Chr22g0350651' => 'lal', 'Lalb_Chr24g0395151' => 'lal', 'Lj1A1231T40' => 'lonja', 'Lj1A221T48' => 'lonja', 'Lj1C924T12' => 'lonja', 'Lj2C993G6' => 'lonja', 'Lj3g0005790' => 'lja', 'Lj3g0015432' => 'lja', 'Lj3g0017722' => 'lja', 'Lj3g0018497' => 'lja', 'Lj4g0025071' => 'lja', 'Lsat_1_v5_gn_1_129680' => 'lsa', 'Lsat_1_v5_gn_2_25321' => 'lsa', 'Lsat_1_v5_gn_2_95461' => 'lsa', 'Lsat_1_v5_gn_4_159620' => 'lsa', 'Lsat_1_v5_gn_6_41301' => 'lsa', 'Lsat_1_v5_gn_6_74660' => 'lsa', 'Lsat_1_v5_gn_7_11520' => 'lsa', 'Lsat_1_v5_gn_9_67680' => 'lsa', 'Manes.04G008300' => 'mes', 'Manes.04G008400' => 'mes', 'Manes.04G026500' => 'mes', 'Manes.10G135300' => 'mes', 'Manes.11G157300' => 'mes', 'Manes.12G074000' => 'mes', 'Manes.16G006200' => 'mes', 'Manes.17G026400' => 'mes', 'Mapoly0024s0086' => 'mpo', 'Mapoly0024s0087' => 'mpo', 'Mapoly0071s0057' => 'mpo', 'Mapoly0204s0012' => 'mpo', 'MBI04_g37681_MAGBIO' => 'mbi', 'MBI05_g17779_MAGBIO' => 'mbi', 'MBI12_g31184_MAGBIO' => 'mbi', 'MBI17_g11083_MAGBIO' => 'mbi', 'MBI18_g03883_MAGBIO' => 'mbi', 'MBI18_g28940_MAGBIO' => 'mbi', 'MCO01G690' => 'mco', 'MD03G1109900' => 'mdo', 'MD03G1134800' => 'mdo', 'MD05G1348000' => 'mdo', 'MD10G1322400' => 'mdo', 'MD11G1123300' => 'mdo', 'MD11G1157600' => 'mdo', 'Medtr2g084875' => 'mtr', 'Medtr2g088130' => 'mtr', 'Medtr4g055310' => 'mtr', 'Medtr4g061070' => 'mtr', 'Medtr4g132250' => 'mtr', 'MELO3C004795.2' => 'cme', 'MELO3C004797.2' => 'cme', 'MELO3C007396.2' => 'cme', 'MELO3C019277.2' => 'cme', 'MELO3C021449.2' => 'cme', 'MELO3C025736.2' => 'cme', 'Migut.D02175' => 'egut', 'Migut.H01573' => 'egut', 'Migut.M01327' => 'egut', 'Migut.N02513' => 'egut', 'MSTRG.14638' => 'ama', 'MSTRG.18632' => 'ama', 'MSTRG.7203' => 'ama', 'Nitab4.5_0000533g0140' => 'nta', 'Nitab4.5_0000888g0150' => 'nta', 'Nitab4.5_0001453g0040' => 'nta', 'Nitab4.5_0002827g0090' => 'nta', 'Nitab4.5_0003082g0040' => 'nta', 'Nitab4.5_0007799g0040' => 'nta', 'Nitab4.5_0008983g0010' => 'nta', 'Nitab4.5_0009017g0020' => 'nta', 'Nn1g02132' => 'nnu', 'Nn1g03492' => 'nnu', 'Nn1g03493' => 'nnu', 'Nn1g03494' => 'nnu', 'Nn1g07164' => 'nnu', 'Nn1g07291' => 'nnu', 'Nn2g10655' => 'nnu', 'Nn2g11652' => 'nnu', 'Nn2g14008' => 'nnu', 'Nn3g17476' => 'nnu', 'Nn3g17477' => 'nnu', 'Nn4g22370' => 'nnu', 'Nn4g25255' => 'nnu', 'Nn5g27755' => 'nnu', 'Nn6g34260' => 'nnu', 'Nn6g35041' => 'nnu', 'Oeu005924.1' => 'oeu', 'Oeu008383.1' => 'oeu', 'Oeu014928.1' => 'oeu', 'Oeu019889.1' => 'oeu', 'Oeu022271.1' => 'oeu', 'Oeu025271.1' => 'oeu', 'Oeu036302.1' => 'oeu', 'Oeu044100.1' => 'oeu', 'Os01g0528300' => 'osa', 'Os03g0286200' => 'osa', 'Os04g0406600' => 'osa', 'Os07g0512000' => 'osa', 'Os07g0694600' => 'osa', 'Os08g0411000' => 'osa', 'Os09g0565700' => 'osa', 'Os09g0566050' => 'osa', 'Os10g0523700' => 'osa', 'Peaxi162Scf00002g00514' => 'pax', 'Peaxi162Scf00047g01817' => 'pax', 'Peaxi162Scf00114g00001' => 'pax', 'Peaxi162Scf00147g00613' => 'pax', 'Peaxi162Scf00389g00425' => 'pax', 'PGR042G1139' => 'pgr', 'PGR042G3273' => 'pgr', 'PGR102G2180' => 'pgr', 'PGR119G0234' => 'pgr', 'PGR119G0668' => 'pgr', 'PGSC0003DMG400007122' => 'stu', 'PGSC0003DMG400016478' => 'stu', 'PGSC0003DMG400025374' => 'stu', 'PGSC0003DMG400026536' => 'stu', 'Phvul.003G079600' => 'pvu', 'Phvul.005G115600' => 'pvu', 'Phvul.005G127100' => 'pvu', 'Phvul.006G149500' => 'pvu', 'Phvul.006G149600' => 'pvu', 'Phvul.011G071800' => 'pvu', 'Phvul.011G090400' => 'pvu', 'Potri.004G013400' => 'ptr', 'Potri.004G188100' => 'ptr', 'Potri.008G195500' => 'ptr', 'Potri.009G148800' => 'ptr', 'Potri.011G004700' => 'ptr', 'Pp3c17_22810' => 'ppa', 'Pp3c18_4480' => 'ppa', 'Pp3c19_13030' => 'ppa', 'Pp3c1_33620' => 'ppa', 'Pp3c2_9380' => 'ppa', 'PRCOL_00001023' => 'pco', 'Prupe.3G216300' => 'ppe', 'Prupe.4G019500' => 'ppe', 'Prupe.6G092500' => 'ppe', 'Prupe.6G119200' => 'ppe', 'Psat0s1945g0080' => 'psa', 'Psat0s4167g0040' => 'psa', 'Psat1g185800' => 'psa', 'Psat4g006440' => 'psa', 'Psat4g006480' => 'psa', 'Psat4g168120' => 'psa', 'Psat5g255680' => 'psa', 'Psat5g261760' => 'psa', 'Psat7g222120' => 'psa', 'PSO063G7252' => 'pso', 'PSO170G4778' => 'pso', 'PSO210G2249' => 'pso', 'PSO339G2411' => 'pso', 'PSO339G2457' => 'pso', 'PSO339G2854' => 'pso', 'PSO339G4288' => 'pso', 'PSO339G4615' => 'pso', 'PSO384G2796' => 'pso', 'PSO384G2940' => 'pso', 'PSO384G4227' => 'pso', 'PSO478G1425' => 'pso', 'PSO541G3863' => 'pso', 'PSO675G0507' => 'pso', 'PSO782G0338' => 'pso', 'PSO832G0644' => 'pso', 'QL01p013664' => 'qlo', 'QL01p036598' => 'qlo', 'QL05p072984' => 'qlo', 'QL08p005768' => 'qlo', 'QL08p032743' => 'qlo', 'QL93p0073_0439' => 'qlo', 'QL93p0073_0444' => 'qlo', 'RcHm_v2.0_Chr5g0002851' => 'rch', 'RcHm_v2.0_Chr5g0055201' => 'rch', 'RcHm_v2.0_Chr5g0061191' => 'rch', 'RcHm_v2.0_Chr7g0203231' => 'rch', 'Rhsim01G0208100' => 'rsi', 'Rhsim01G0208200' => 'rsi', 'Rhsim02G0106500' => 'rsi', 'Rhsim03G0107900' => 'rsi', 'Rhsim06G0163400' => 'rsi', 'Rhsim13G0105200' => 'rsi', 'Sabra04G0006300' => 'sbr', 'Sabra04G0127000' => 'sbr', 'Sabra08G0148700' => 'sbr', 'Sabra09G0117400' => 'sbr', 'SalBow1G3326' => 'sbo', 'SalBow3G3228' => 'sbo', 'SalBow6G1634' => 'sbo', 'SalBow6G3603' => 'sbo', 'SalBow6G5266' => 'sbo', 'SalBow7G2265' => 'sbo', 'SalBow8G0850' => 'sbo', 'SalBow8G2592' => 'sbo', 'Sc05g0009240' => 'sci', 'Sc12g0002300' => 'sci', 'Sc21g0000100' => 'sci', 'Sc21g0004720' => 'sci', 'Sed0002949' => 'sed', 'Sed0004114' => 'sed', 'Sed0004306' => 'sed', 'Sed0006172' => 'sed', 'Sed0008413' => 'sed', 'Sed0013809' => 'sed', 'Sed0019556' => 'sed', 'SEGI_03570' => 'sgi', 'SEGI_07859' => 'sgi', 'SEGI_15042' => 'sgi', 'SEGI_16263' => 'sgi', 'SEGI_16552' => 'sgi', 'SEGI_24331' => 'sgi', 'SEGI_27316' => 'sgi', 'SEGI_29521' => 'sgi', 'SEGI_41342' => 'sgi', 'SGA_v2.0_scaffold27G11617' => 'sas', 'SGA_v2.0_scaffold316G48428' => 'sas', 'SGA_v2.0_scaffold49G18261' => 'sas', 'SGA_v2.0_scaffold7G03831' => 'sas', 'SGA_v2.0_scaffold93G28359' => 'sas', 'SHI02210' => 'shi', 'SHI06028' => 'shi', 'SHI06321' => 'shi', 'SMO111G0012' => 'smo', 'SMO228G0080' => 'smo', 'SMO356G0756' => 'smo', 'Solyc02g080620.3' => 'sly', 'Solyc06g074530.1' => 'sly', 'Solyc11g066890.1' => 'sly', 'Solyc11g072520.3' => 'sly', 'Sopen02g025330' => 'spe', 'Sopen06g031000' => 'spe', 'Sopen09g008240' => 'spe', 'Sopen09g025210' => 'spe', 'Sopen11g026600' => 'spe', 'Sopen11g030170' => 'spe', 'Sp1g10420' => 'spa', 'Sp3g06570' => 'spa', 'Sp4g10660' => 'spa', 'Sp5g16460' => 'spa', 'Sp6g22710' => 'spa', 'TAR365G0112' => 'tar', 'TAR369G0717' => 'tar', 'TAR374G0976' => 'tar', 'TAR623G1128' => 'tar', 'TAR626G1937' => 'tar', 'TAR627G0123' => 'tar', 'TAR628G0305' => 'tar', 'TAR636G1176' => 'tar', 'TAR636G2442' => 'tar', 'THA.LOC104800556' => 'tha', 'THA.LOC104809501' => 'tha', 'THA.LOC104815126' => 'tha', 'THA.LOC104815732' => 'tha', 'THA.LOC104823528' => 'tha', 'Thecc.02G365600' => 'tca', 'Thecc.06G222300' => 'tca', 'Thecc.09G261800' => 'tca', 'Thecc.09G291400' => 'tca', 'Thhalv10003028m.g' => 'esa', 'Thhalv10007886m.g' => 'esa', 'Thhalv10016085m.g' => 'esa', 'Thhalv10016681m.g' => 'esa', 'Thhalv10020951m.g' => 'esa', 'TPR.G15598' => 'tpr', 'TPR.G29305' => 'tpr', 'TPR.G32395' => 'tpr', 'TPR.G36998' => 'tpr', 'TPR.G4227' => 'tpr', 'TWI18G1433' => 'twi', 'TWI31G0755' => 'twi', 'TWI38G0912' => 'twi', 'TWI75G1097' => 'twi', 'TWI75G1619' => 'twi', 'TWI79G1336' => 'twi', 'unitig_0.g943' => 'ugi', 'unitig_0.g944' => 'ugi', 'unitig_22.g6646' => 'ugi', 'unitig_37.g12681' => 'ugi', 'unitig_8.g3290' => 'ugi', 'vmacro03278' => 'vma', 'vmacro12197' => 'vma', 'vmacro14478' => 'vma', 'vmacro15787' => 'vma', 'vmacro15789' => 'vma', 'vmacro15790' => 'vma', 'vmacro15806' => 'vma', 'vmacro22907' => 'vma', 'vmacro22908' => 'vma', 'vmacro22909' => 'vma', 'vmacro23108' => 'vma', 'VMungo0540G0540' => 'vmu', 'VMungo0540G2468' => 'vmu', 'VMungo1080G0390' => 'vmu', 'VMungo1080G1165' => 'vmu', 'VMungo1127G0170' => 'vmu', 'VMungo1127G2099' => 'vmu', 'VMungo1215G3013' => 'vmu', 'Zm00001eb013110' => 'zma', 'Zm00001eb084260' => 'zma', 'Zm00001eb096110' => 'zma', 'Zm00001eb217510' => 'zma', 'Zm00001eb322550' => 'zma', 'Zm00001eb390770' => 'zma', 'Zm00001eb397170' => 'zma', 'Zm00001eb404610' => 'zma', 'Zm00001eb421790' => 'zma' ), 'gf_id' => 'HOM05D000911', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000911' ), 'data_identifier' => 'HOM05D000911', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000911', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27780' => 'bna', 'A03p35380' => 'bna', 'A04p21160' => 'bna', 'A05p40570' => 'bna', 'A06p26900' => 'bna', 'A08p33230' => 'bna', 'A09p65960' => 'bna', 'A10p18290' => 'bna', 'Aa31LG1G12990' => 'aar', 'Aa31LG1G2980' => 'aar', 'Aa31LG4G14320' => 'aar', 'Aa31LG7G11800' => 'aar', 'Aa31sc36G50' => 'aar', 'Aa31sc36G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3721' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5459' => 'aag', 'Actinidia03028' => 'ach', 'Actinidia03753' => 'ach', 'Actinidia04187' => 'ach', 'Actinidia05509' => 'ach', 'Actinidia24180' => 'ach', 'Actinidia26906' => 'ach', 'Actinidia37097' => 'ach', 'Actinidia38249' => 'ach', 'Ah.01g003470' => 'amhyb', 'Ah.01g004580' => 'amhyb', 'Ah.01g014850' => 'amhyb', 'Ah.01g016830' => 'amhyb', 'Ah.14g088000' => 'amhyb', 'AL1G22980' => 'aly', 'AL3G18990' => 'aly', 'AL4G22440' => 'aly', 'AL4G33180' => 'aly', 'AL5G22920' => 'aly', 'AL6G33660' => 'aly', 'AL8G20720' => 'aly', 'Aqoxy1G00935' => 'aox', 'Aqoxy1G02094' => 'aox', 'Aqoxy2G01239' => 'aox', 'Aqoxy4G01870' => 'aox', 'Aqoxy7G00450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.36ZVTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71EM27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5D6C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH3WRE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3NCM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RIM768' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YB5YRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z36GDV' => 'arhy', 'AT1G08250' => 'ath', 'AT1G11790' => 'ath', 'AT2G27820' => 'ath', 'AT3G07630' => 'ath', 'AT3G44720' => 'ath', 'AT5G22630' => 'ath', 'ATR0693G304' => 'atr', 'ATR0794G109' => 'atr', 'ATR0820G120' => 'atr', 'ATR1159G064' => 'atr', 'Atru.chr10.2239' => 'acertr', 'Atru.chr3.3371' => 'acertr', 'Atru.chr6.3202' => 'acertr', 'AUR62006499' => 'cqu', 'AUR62012718' => 'cqu', 'AUR62021938' => 'cqu', 'AUR62023932' => 'cqu', 'AUR62025034' => 'cqu', 'AUR62025035' => 'cqu', 'AUR62038307' => 'cqu', 'AUR62043466' => 'cqu', 'BcaB02g10748' => 'bca', 'BcaB03g13231' => 'bca', 'BcaB03g14689' => 'bca', 'BcaB05g22716' => 'bca', 'BcaB06g28172' => 'bca', 'BcaB08g36413' => 'bca', 'BcaC01g02186' => 'bca', 'BcaC01g04272' => 'bca', 'BcaC02g08080' => 'bca', 'BcaC02g08227' => 'bca', 'BcaC03g13901' => 'bca', 'BcaC04g19593' => 'bca', 'BcaC04g20874' => 'bca', 'BcaC05g29557' => 'bca', 'BcaC06g35505' => 'bca', 'BcaC07g41954' => 'bca', 'BcaC07g41955' => 'bca', 'BcaC07g41956' => 'bca', 'BcaC07g42519' => 'bca', 'BcaC07g42520' => 'bca', 'BcaC07g42523' => 'bca', 'BcaC07g42524' => 'bca', 'BcaC07g42525' => 'bca', 'BcaC08g47480' => 'bca', 'BcaC08g47481' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00530' => 'bna', 'BolC2t07178H' => 'bol', 'BolC3t16567H' => 'bol', 'BolC4t27234H' => 'bol', 'BolC5t29728H' => 'bol', 'BolC5t34622H' => 'bol', 'BolC6t40321H' => 'bol', 'BolC7t42028H' => 'bol', 'BolC8t49125H' => 'bol', 'BolC8t52538H' => 'bol', 'BolC8t52539H' => 'bol', 'BolC9t56681H' => 'bol', 'BolC9t58266H' => 'bol', 'BolSC21t60294H' => 'bol', 'BraA02t05670Z' => 'bra', 'BraA03t12716Z' => 'bra', 'BraA04t17685Z' => 'bra', 'BraA05t22788Z' => 'bra', 'BraA06t24032Z' => 'bra', 'BraA06t25625Z' => 'bra', 'BraA07t27930Z' => 'bra', 'BraA08t35242Z' => 'bra', 'BraA09t38609Z' => 'bra', 'BraA10t43905Z' => 'bra', 'C02p11060' => 'bna', 'C03p42990' => 'bna', 'C03p67310' => 'bna', 'C04p56990' => 'bna', 'C04p58660' => 'bna', 'C05p09890' => 'bna', 'C05p59680' => 'bna', 'C06p19830' => 'bna', 'C06p53040' => 'bna', 'C07p15230' => 'bna', 'C08p50070' => 'bna', 'C08p50090' => 'bna', 'C09p38330' => 'bna', 'C09p53940' => 'bna', 'CAN.G1014.1' => 'can', 'CAN.G644.30' => 'can', 'CAN.G84.47' => 'can', 'CAN.G919.8' => 'can', 'CANSAT54G0113' => 'cansat', 'CANSAT54G1286' => 'cansat', 'CANSAT64G1020' => 'cansat', 'CARHR008080' => 'chi', 'CARHR008090' => 'chi', 'CARHR012130' => 'chi', 'CARHR038390' => 'chi', 'CARHR082330' => 'chi', 'CARHR120520' => 'chi', 'CARHR151470' => 'chi', 'CARHR190950' => 'chi', 'Carub.0001s0760' => 'cru', 'Carub.0001s1146' => 'cru', 'Carub.0003s0721' => 'cru', 'Carub.0004s0858' => 'cru', 'Carub.0005s1040' => 'cru', 'Carub.0006s2035' => 'cru', 'Carub.0015s0005' => 'cru', 'Ca_01607_v3' => 'car', 'Ca_01677_v3' => 'car', 'Ca_06087_v3' => 'car', 'Ca_19238_v3' => 'car', 'Ca_19373_v3' => 'car', 'Ca_21079_v3' => 'car', 'CBR_g54016' => 'cbr', 'CBR_g54018' => 'cbr', 'CBR_g54020' => 'cbr', 'Cc01_g09780' => 'ccan', 'Cc01_g11680' => 'ccan', 'Cc02_g15610' => 'ccan', 'Cc05_g04350' => 'ccan', 'Cc09_g01580' => 'ccan', 'CDE01G0795' => 'cde', 'CDE02G2024' => 'cde', 'CDE02G2260' => 'cde', 'CDE02G4561' => 'cde', 'CDE05G2733' => 'cde', 'CDE05G3422' => 'cde', 'CDE06G2003' => 'cde', 'CDE08G0576' => 'cde', 'CDE09G0048' => 'cde', 'CDE11G0805' => 'cde', 'Cfa003644' => 'cfa', 'Cfa006290' => 'cfa', 'Cfa010080' => 'cfa', 'Cfa011376' => 'cfa', 'Cfa011576' => 'cfa', 'Cfa011577' => 'cfa', 'Cfa014389' => 'cfa', 'Ciclev10006044m.g' => 'ccl', 'Ciclev10006954m.g' => 'ccl', 'Ciclev10015131m.g' => 'ccl', 'Ciclev10015580m.g' => 'ccl', 'Ciclev10028359m.g' => 'ccl', 'Ciclev10028573m.g' => 'ccl', 'CiPaw.03G159300' => 'cil', 'CiPaw.04G115100' => 'cil', 'CiPaw.09G092800' => 'cil', 'CiPaw.10G071800' => 'cil', 'CiPaw.13G105800' => 'cil', 'CiPaw.13G141000' => 'cil', 'CiPaw.14G103400' => 'cil', 'ClCG01G012700' => 'cla', 'ClCG01G012720' => 'cla', 'ClCG01G021920' => 'cla', 'ClCG02G008870' => 'cla', 'ClCG02G020840' => 'cla', 'ClCG02G021930' => 'cla', 'COL.COLO4_19302' => 'col', 'COL.COLO4_25262' => 'col', 'COL.COLO4_31788' => 'col', 'Cpa.g.c34684' => 'cpa', 'Cpa.g.c36520.1' => 'cpa', 'Cpa.g.c45626' => 'cpa', 'Cpa.g.sc121.17' => 'cpa', 'Cpa.g.sc13.22' => 'cpa', 'Cpa.g.sc87.88' => 'cpa', 'Cre06.g261800' => 'cre', 'CsaV3_1G014500' => 'csa', 'CsaV3_1G014510' => 'csa', 'CsaV3_2G034880' => 'csa', 'CsaV3_6G014760' => 'csa', 'CsaV3_6G021500' => 'csa', 'CsaV3_6G048980' => 'csa', 'CSS0002511' => 'camsi', 'CSS0007556' => 'camsi', 'CSS0008532' => 'camsi', 'CSS0009709' => 'camsi', 'CSS0010486' => 'camsi', 'CSS0016768' => 'camsi', 'CSS0023512' => 'camsi', 'CSS0025341' => 'camsi', 'CSS0027999' => 'camsi', 'CSS0028944' => 'camsi', 'CSS0032292' => 'camsi', 'CSS0032464' => 'camsi', 'CSS0037153' => 'camsi', 'CSS0039256' => 'camsi', 'CSS0048392' => 'camsi', 'CSS0050458' => 'camsi', 'DCAR_004224' => 'dca', 'DCAR_006147' => 'dca', 'DCAR_006465' => 'dca', 'DCAR_008159' => 'dca', 'DCAR_012164' => 'dca', 'DCAR_019764' => 'dca', 'Dinv05418' => 'din', 'Dinv10839' => 'din', 'Dinv12521' => 'din', 'Dinv13900' => 'din', 'Dinv29426' => 'din', 'Duzib150G0263' => 'dzi', 'Duzib168G1178' => 'dzi', 'Duzib168G1924' => 'dzi', 'Duzib170G0299' => 'dzi', 'Duzib170G0813' => 'dzi', 'Duzib235G1128' => 'dzi', 'Duzib248G1060' => 'dzi', 'ECA232G1910' => 'eca', 'ECA233G4621' => 'eca', 'ECA238G1216' => 'eca', 'ECA238G1784' => 'eca', 'ECA248G1242' => 'eca', 'EL10Ac8g20071' => 'bvu', 'EL10Ac9g21086' => 'bvu', 'EL10Ac9g22407' => 'bvu', 'EL10Ac9g22412' => 'bvu', 'Eucgr.A01119' => 'egr', 'Eucgr.E04043' => 'egr', 'Eucgr.J00428' => 'egr', 'Eucgr.J00958' => 'egr', 'FAN11G3091' => 'fan', 'FAN11G3651' => 'fan', 'FAN16G2566' => 'fan', 'FAN21G3155' => 'fan', 'FAN21G3400' => 'fan', 'FAN21G3543' => 'fan', 'FAN25G0234' => 'fan', 'FAN25G1422' => 'fan', 'FAN25G3392' => 'fan', 'FvH4_3g01940' => 'fve', 'FvH4_3g29870' => 'fve', 'FvH4_3g33680' => 'fve', 'Glyma.09G004200' => 'gma', 'Glyma.11G151288' => 'gma', 'Glyma.11G189100' => 'gma', 'Glyma.12G072500' => 'gma', 'Glyma.12G085500' => 'gma', 'Glyma.12G181800' => 'gma', 'Glyma.12G193000' => 'gma', 'Glyma.13G309300' => 'gma', 'Glyma.13G319000' => 'gma', 'Glyma.17G012600' => 'gma', 'Gohir.A06G148600' => 'ghi', 'Gohir.A07G115800' => 'ghi', 'Gohir.A08G003600' => 'ghi', 'Gohir.A09G093300' => 'ghi', 'Gohir.A09G105400' => 'ghi', 'Gohir.A09G105500' => 'ghi', 'Gohir.D06G154600' => 'ghi', 'Gohir.D07G120200' => 'ghi', 'Gohir.D08G013900' => 'ghi', 'Gohir.D09G093100' => 'ghi', 'Gohir.D09G102200' => 'ghi', 'Gohir.D09G102300' => 'ghi', 'Gorai.001G129400' => 'gra', 'Gorai.004G008200' => 'gra', 'Gorai.006G109800' => 'gra', 'Gorai.006G119500' => 'gra', 'Gorai.006G121300' => 'gra', 'Gorai.010G180700' => 'gra', 'GSVIVG01012716001' => 'vvi', 'GSVIVG01025118001' => 'vvi', 'GSVIVG01030439001' => 'vvi', 'GSVIVG01031397001' => 'vvi', 'HanXRQChr01g0004201' => 'han', 'HanXRQChr02g0054941' => 'han', 'HanXRQChr05g0141811' => 'han', 'HanXRQChr07g0197751' => 'han', 'HanXRQChr11g0346691' => 'han', 'HanXRQChr13g0396971' => 'han', 'HanXRQChr14g0432951' => 'han', 'HanXRQChr14g0452001' => 'han', 'HanXRQChr15g0496681' => 'han', 'HanXRQChr17g0557491' => 'han', 'HanXRQChr17g0557501' => 'han', 'Haze_06809' => 'cav', 'Haze_12852' => 'cav', 'Haze_15850' => 'cav', 'Haze_23446' => 'cav', 'Haze_23942' => 'cav', 'Haze_23943' => 'cav', 'Hma1.2p1_0091F.1_g046450' => 'hma', 'Hma1.2p1_0128F.1_g059910' => 'hma', 'Hma1.2p1_0249F.1_g102260' => 'hma', 'Hma1.2p1_0453F.1_g156190' => 'hma', 'Hma1.2p1_0695F.1_g204380' => 'hma', 'Hma1.2p1_0749F.1_g212650' => 'hma', 'Hma1.2p1_2156F.1_g315420' => 'hma', 'Hma1.2p1_2686F.1_g326940' => 'hma', 'HPP92_006428' => 'vpl', 'HPP92_012069' => 'vpl', 'HPP92_014129' => 'vpl', 'HPP92_014133' => 'vpl', 'HPP92_017315' => 'vpl', 'HPP92_026445' => 'vpl', 'HPP92_026446' => 'vpl', 'Hund00774' => 'sun', 'Hund07682' => 'sun', 'Hund21413' => 'sun', 'Hund23462' => 'sun', 'Hund23463' => 'sun', 'Lalb_Chr03g0027911' => 'lal', 'Lalb_Chr13g0304271' => 'lal', 'Lalb_Chr19g0137471' => 'lal', 'Lalb_Chr22g0350651' => 'lal', 'Lalb_Chr24g0395151' => 'lal', 'Lj1A1231T40' => 'lonja', 'Lj1A221T48' => 'lonja', 'Lj1C924T12' => 'lonja', 'Lj2C993G6' => 'lonja', 'Lj3g0005790' => 'lja', 'Lj3g0015432' => 'lja', 'Lj3g0017722' => 'lja', 'Lj3g0018497' => 'lja', 'Lj4g0025071' => 'lja', 'Lsat_1_v5_gn_1_129680' => 'lsa', 'Lsat_1_v5_gn_2_25321' => 'lsa', 'Lsat_1_v5_gn_2_95461' => 'lsa', 'Lsat_1_v5_gn_4_159620' => 'lsa', 'Lsat_1_v5_gn_6_41301' => 'lsa', 'Lsat_1_v5_gn_6_74660' => 'lsa', 'Lsat_1_v5_gn_7_11520' => 'lsa', 'Lsat_1_v5_gn_9_67680' => 'lsa', 'Manes.04G008300' => 'mes', 'Manes.04G008400' => 'mes', 'Manes.04G026500' => 'mes', 'Manes.10G135300' => 'mes', 'Manes.11G157300' => 'mes', 'Manes.12G074000' => 'mes', 'Manes.16G006200' => 'mes', 'Manes.17G026400' => 'mes', 'Mapoly0024s0086' => 'mpo', 'Mapoly0024s0087' => 'mpo', 'Mapoly0071s0057' => 'mpo', 'Mapoly0204s0012' => 'mpo', 'MBI04_g37681_MAGBIO' => 'mbi', 'MBI05_g17779_MAGBIO' => 'mbi', 'MBI12_g31184_MAGBIO' => 'mbi', 'MBI17_g11083_MAGBIO' => 'mbi', 'MBI18_g03883_MAGBIO' => 'mbi', 'MBI18_g28940_MAGBIO' => 'mbi', 'MCO01G690' => 'mco', 'MD03G1109900' => 'mdo', 'MD03G1134800' => 'mdo', 'MD05G1348000' => 'mdo', 'MD10G1322400' => 'mdo', 'MD11G1123300' => 'mdo', 'MD11G1157600' => 'mdo', 'Medtr2g084875' => 'mtr', 'Medtr2g088130' => 'mtr', 'Medtr4g055310' => 'mtr', 'Medtr4g061070' => 'mtr', 'Medtr4g132250' => 'mtr', 'MELO3C004795.2' => 'cme', 'MELO3C004797.2' => 'cme', 'MELO3C007396.2' => 'cme', 'MELO3C019277.2' => 'cme', 'MELO3C021449.2' => 'cme', 'MELO3C025736.2' => 'cme', 'Migut.D02175' => 'egut', 'Migut.H01573' => 'egut', 'Migut.M01327' => 'egut', 'Migut.N02513' => 'egut', 'MSTRG.14638' => 'ama', 'MSTRG.18632' => 'ama', 'MSTRG.7203' => 'ama', 'Nitab4.5_0000533g0140' => 'nta', 'Nitab4.5_0000888g0150' => 'nta', 'Nitab4.5_0001453g0040' => 'nta', 'Nitab4.5_0002827g0090' => 'nta', 'Nitab4.5_0003082g0040' => 'nta', 'Nitab4.5_0007799g0040' => 'nta', 'Nitab4.5_0008983g0010' => 'nta', 'Nitab4.5_0009017g0020' => 'nta', 'Nn1g02132' => 'nnu', 'Nn1g03492' => 'nnu', 'Nn1g03493' => 'nnu', 'Nn1g03494' => 'nnu', 'Nn1g07164' => 'nnu', 'Nn1g07291' => 'nnu', 'Nn2g10655' => 'nnu', 'Nn2g11652' => 'nnu', 'Nn2g14008' => 'nnu', 'Nn3g17476' => 'nnu', 'Nn3g17477' => 'nnu', 'Nn4g22370' => 'nnu', 'Nn4g25255' => 'nnu', 'Nn5g27755' => 'nnu', 'Nn6g34260' => 'nnu', 'Nn6g35041' => 'nnu', 'Oeu005924.1' => 'oeu', 'Oeu008383.1' => 'oeu', 'Oeu014928.1' => 'oeu', 'Oeu019889.1' => 'oeu', 'Oeu022271.1' => 'oeu', 'Oeu025271.1' => 'oeu', 'Oeu036302.1' => 'oeu', 'Oeu044100.1' => 'oeu', 'Os01g0528300' => 'osa', 'Os03g0286200' => 'osa', 'Os04g0406600' => 'osa', 'Os07g0512000' => 'osa', 'Os07g0694600' => 'osa', 'Os08g0411000' => 'osa', 'Os09g0565700' => 'osa', 'Os09g0566050' => 'osa', 'Os10g0523700' => 'osa', 'Peaxi162Scf00002g00514' => 'pax', 'Peaxi162Scf00047g01817' => 'pax', 'Peaxi162Scf00114g00001' => 'pax', 'Peaxi162Scf00147g00613' => 'pax', 'Peaxi162Scf00389g00425' => 'pax', 'PGR042G1139' => 'pgr', 'PGR042G3273' => 'pgr', 'PGR102G2180' => 'pgr', 'PGR119G0234' => 'pgr', 'PGR119G0668' => 'pgr', 'PGSC0003DMG400007122' => 'stu', 'PGSC0003DMG400016478' => 'stu', 'PGSC0003DMG400025374' => 'stu', 'PGSC0003DMG400026536' => 'stu', 'Phvul.003G079600' => 'pvu', 'Phvul.005G115600' => 'pvu', 'Phvul.005G127100' => 'pvu', 'Phvul.006G149500' => 'pvu', 'Phvul.006G149600' => 'pvu', 'Phvul.011G071800' => 'pvu', 'Phvul.011G090400' => 'pvu', 'Potri.004G013400' => 'ptr', 'Potri.004G188100' => 'ptr', 'Potri.008G195500' => 'ptr', 'Potri.009G148800' => 'ptr', 'Potri.011G004700' => 'ptr', 'Pp3c17_22810' => 'ppa', 'Pp3c18_4480' => 'ppa', 'Pp3c19_13030' => 'ppa', 'Pp3c1_33620' => 'ppa', 'Pp3c2_9380' => 'ppa', 'PRCOL_00001023' => 'pco', 'Prupe.3G216300' => 'ppe', 'Prupe.4G019500' => 'ppe', 'Prupe.6G092500' => 'ppe', 'Prupe.6G119200' => 'ppe', 'Psat0s1945g0080' => 'psa', 'Psat0s4167g0040' => 'psa', 'Psat1g185800' => 'psa', 'Psat4g006440' => 'psa', 'Psat4g006480' => 'psa', 'Psat4g168120' => 'psa', 'Psat5g255680' => 'psa', 'Psat5g261760' => 'psa', 'Psat7g222120' => 'psa', 'PSO063G7252' => 'pso', 'PSO170G4778' => 'pso', 'PSO210G2249' => 'pso', 'PSO339G2411' => 'pso', 'PSO339G2457' => 'pso', 'PSO339G2854' => 'pso', 'PSO339G4288' => 'pso', 'PSO339G4615' => 'pso', 'PSO384G2796' => 'pso', 'PSO384G2940' => 'pso', 'PSO384G4227' => 'pso', 'PSO478G1425' => 'pso', 'PSO541G3863' => 'pso', 'PSO675G0507' => 'pso', 'PSO782G0338' => 'pso', 'PSO832G0644' => 'pso', 'QL01p013664' => 'qlo', 'QL01p036598' => 'qlo', 'QL05p072984' => 'qlo', 'QL08p005768' => 'qlo', 'QL08p032743' => 'qlo', 'QL93p0073_0439' => 'qlo', 'QL93p0073_0444' => 'qlo', 'RcHm_v2.0_Chr5g0002851' => 'rch', 'RcHm_v2.0_Chr5g0055201' => 'rch', 'RcHm_v2.0_Chr5g0061191' => 'rch', 'RcHm_v2.0_Chr7g0203231' => 'rch', 'Rhsim01G0208100' => 'rsi', 'Rhsim01G0208200' => 'rsi', 'Rhsim02G0106500' => 'rsi', 'Rhsim03G0107900' => 'rsi', 'Rhsim06G0163400' => 'rsi', 'Rhsim13G0105200' => 'rsi', 'Sabra04G0006300' => 'sbr', 'Sabra04G0127000' => 'sbr', 'Sabra08G0148700' => 'sbr', 'Sabra09G0117400' => 'sbr', 'SalBow1G3326' => 'sbo', 'SalBow3G3228' => 'sbo', 'SalBow6G1634' => 'sbo', 'SalBow6G3603' => 'sbo', 'SalBow6G5266' => 'sbo', 'SalBow7G2265' => 'sbo', 'SalBow8G0850' => 'sbo', 'SalBow8G2592' => 'sbo', 'Sc05g0009240' => 'sci', 'Sc12g0002300' => 'sci', 'Sc21g0000100' => 'sci', 'Sc21g0004720' => 'sci', 'Sed0002949' => 'sed', 'Sed0004114' => 'sed', 'Sed0004306' => 'sed', 'Sed0006172' => 'sed', 'Sed0008413' => 'sed', 'Sed0013809' => 'sed', 'Sed0019556' => 'sed', 'SEGI_03570' => 'sgi', 'SEGI_07859' => 'sgi', 'SEGI_15042' => 'sgi', 'SEGI_16263' => 'sgi', 'SEGI_16552' => 'sgi', 'SEGI_24331' => 'sgi', 'SEGI_27316' => 'sgi', 'SEGI_29521' => 'sgi', 'SEGI_41342' => 'sgi', 'SGA_v2.0_scaffold27G11617' => 'sas', 'SGA_v2.0_scaffold316G48428' => 'sas', 'SGA_v2.0_scaffold49G18261' => 'sas', 'SGA_v2.0_scaffold7G03831' => 'sas', 'SGA_v2.0_scaffold93G28359' => 'sas', 'SHI02210' => 'shi', 'SHI06028' => 'shi', 'SHI06321' => 'shi', 'SMO111G0012' => 'smo', 'SMO228G0080' => 'smo', 'SMO356G0756' => 'smo', 'Solyc02g080620.3' => 'sly', 'Solyc06g074530.1' => 'sly', 'Solyc11g066890.1' => 'sly', 'Solyc11g072520.3' => 'sly', 'Sopen02g025330' => 'spe', 'Sopen06g031000' => 'spe', 'Sopen09g008240' => 'spe', 'Sopen09g025210' => 'spe', 'Sopen11g026600' => 'spe', 'Sopen11g030170' => 'spe', 'Sp1g10420' => 'spa', 'Sp3g06570' => 'spa', 'Sp4g10660' => 'spa', 'Sp5g16460' => 'spa', 'Sp6g22710' => 'spa', 'TAR365G0112' => 'tar', 'TAR369G0717' => 'tar', 'TAR374G0976' => 'tar', 'TAR623G1128' => 'tar', 'TAR626G1937' => 'tar', 'TAR627G0123' => 'tar', 'TAR628G0305' => 'tar', 'TAR636G1176' => 'tar', 'TAR636G2442' => 'tar', 'THA.LOC104800556' => 'tha', 'THA.LOC104809501' => 'tha', 'THA.LOC104815126' => 'tha', 'THA.LOC104815732' => 'tha', 'THA.LOC104823528' => 'tha', 'Thecc.02G365600' => 'tca', 'Thecc.06G222300' => 'tca', 'Thecc.09G261800' => 'tca', 'Thecc.09G291400' => 'tca', 'Thhalv10003028m.g' => 'esa', 'Thhalv10007886m.g' => 'esa', 'Thhalv10016085m.g' => 'esa', 'Thhalv10016681m.g' => 'esa', 'Thhalv10020951m.g' => 'esa', 'TPR.G15598' => 'tpr', 'TPR.G29305' => 'tpr', 'TPR.G32395' => 'tpr', 'TPR.G36998' => 'tpr', 'TPR.G4227' => 'tpr', 'TWI18G1433' => 'twi', 'TWI31G0755' => 'twi', 'TWI38G0912' => 'twi', 'TWI75G1097' => 'twi', 'TWI75G1619' => 'twi', 'TWI79G1336' => 'twi', 'unitig_0.g943' => 'ugi', 'unitig_0.g944' => 'ugi', 'unitig_22.g6646' => 'ugi', 'unitig_37.g12681' => 'ugi', 'unitig_8.g3290' => 'ugi', 'vmacro03278' => 'vma', 'vmacro12197' => 'vma', 'vmacro14478' => 'vma', 'vmacro15787' => 'vma', 'vmacro15789' => 'vma', 'vmacro15790' => 'vma', 'vmacro15806' => 'vma', 'vmacro22907' => 'vma', 'vmacro22908' => 'vma', 'vmacro22909' => 'vma', 'vmacro23108' => 'vma', 'VMungo0540G0540' => 'vmu', 'VMungo0540G2468' => 'vmu', 'VMungo1080G0390' => 'vmu', 'VMungo1080G1165' => 'vmu', 'VMungo1127G0170' => 'vmu', 'VMungo1127G2099' => 'vmu', 'VMungo1215G3013' => 'vmu', 'Zm00001eb013110' => 'zma', 'Zm00001eb084260' => 'zma', 'Zm00001eb096110' => 'zma', 'Zm00001eb217510' => 'zma', 'Zm00001eb322550' => 'zma', 'Zm00001eb390770' => 'zma', 'Zm00001eb397170' => 'zma', 'Zm00001eb404610' => 'zma', 'Zm00001eb421790' => 'zma' ) $gf_id = 'HOM05D000911' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000911' ) $data_identifier = 'HOM05D000911' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 16, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 5, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 6, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 8, 'nnu' => (int) 16, 'oeu' => (int) 8, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 5, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 16, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421790' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000911', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27780' => 'bna', 'A03p35380' => 'bna', 'A04p21160' => 'bna', 'A05p40570' => 'bna', 'A06p26900' => 'bna', 'A08p33230' => 'bna', 'A09p65960' => 'bna', 'A10p18290' => 'bna', 'Aa31LG1G12990' => 'aar', 'Aa31LG1G2980' => 'aar', 'Aa31LG4G14320' => 'aar', 'Aa31LG7G11800' => 'aar', 'Aa31sc36G50' => 'aar', 'Aa31sc36G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3721' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5459' => 'aag', 'Actinidia03028' => 'ach', 'Actinidia03753' => 'ach', 'Actinidia04187' => 'ach', 'Actinidia05509' => 'ach', 'Actinidia24180' => 'ach', 'Actinidia26906' => 'ach', 'Actinidia37097' => 'ach', 'Actinidia38249' => 'ach', 'Ah.01g003470' => 'amhyb', 'Ah.01g004580' => 'amhyb', 'Ah.01g014850' => 'amhyb', 'Ah.01g016830' => 'amhyb', 'Ah.14g088000' => 'amhyb', 'AL1G22980' => 'aly', 'AL3G18990' => 'aly', 'AL4G22440' => 'aly', 'AL4G33180' => 'aly', 'AL5G22920' => 'aly', 'AL6G33660' => 'aly', 'AL8G20720' => 'aly', 'Aqoxy1G00935' => 'aox', 'Aqoxy1G02094' => 'aox', 'Aqoxy2G01239' => 'aox', 'Aqoxy4G01870' => 'aox', 'Aqoxy7G00450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.36ZVTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71EM27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5D6C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH3WRE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3NCM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RIM768' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YB5YRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z36GDV' => 'arhy', 'AT1G08250' => 'ath', 'AT1G11790' => 'ath', 'AT2G27820' => 'ath', 'AT3G07630' => 'ath', 'AT3G44720' => 'ath', 'AT5G22630' => 'ath', 'ATR0693G304' => 'atr', 'ATR0794G109' => 'atr', 'ATR0820G120' => 'atr', 'ATR1159G064' => 'atr', 'Atru.chr10.2239' => 'acertr', 'Atru.chr3.3371' => 'acertr', 'Atru.chr6.3202' => 'acertr', 'AUR62006499' => 'cqu', 'AUR62012718' => 'cqu', 'AUR62021938' => 'cqu', 'AUR62023932' => 'cqu', 'AUR62025034' => 'cqu', 'AUR62025035' => 'cqu', 'AUR62038307' => 'cqu', 'AUR62043466' => 'cqu', 'BcaB02g10748' => 'bca', 'BcaB03g13231' => 'bca', 'BcaB03g14689' => 'bca', 'BcaB05g22716' => 'bca', 'BcaB06g28172' => 'bca', 'BcaB08g36413' => 'bca', 'BcaC01g02186' => 'bca', 'BcaC01g04272' => 'bca', 'BcaC02g08080' => 'bca', 'BcaC02g08227' => 'bca', 'BcaC03g13901' => 'bca', 'BcaC04g19593' => 'bca', 'BcaC04g20874' => 'bca', 'BcaC05g29557' => 'bca', 'BcaC06g35505' => 'bca', 'BcaC07g41954' => 'bca', 'BcaC07g41955' => 'bca', 'BcaC07g41956' => 'bca', 'BcaC07g42519' => 'bca', 'BcaC07g42520' => 'bca', 'BcaC07g42523' => 'bca', 'BcaC07g42524' => 'bca', 'BcaC07g42525' => 'bca', 'BcaC08g47480' => 'bca', 'BcaC08g47481' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00530' => 'bna', 'BolC2t07178H' => 'bol', 'BolC3t16567H' => 'bol', 'BolC4t27234H' => 'bol', 'BolC5t29728H' => 'bol', 'BolC5t34622H' => 'bol', 'BolC6t40321H' => 'bol', 'BolC7t42028H' => 'bol', 'BolC8t49125H' => 'bol', 'BolC8t52538H' => 'bol', 'BolC8t52539H' => 'bol', 'BolC9t56681H' => 'bol', 'BolC9t58266H' => 'bol', 'BolSC21t60294H' => 'bol', 'BraA02t05670Z' => 'bra', 'BraA03t12716Z' => 'bra', 'BraA04t17685Z' => 'bra', 'BraA05t22788Z' => 'bra', 'BraA06t24032Z' => 'bra', 'BraA06t25625Z' => 'bra', 'BraA07t27930Z' => 'bra', 'BraA08t35242Z' => 'bra', 'BraA09t38609Z' => 'bra', 'BraA10t43905Z' => 'bra', 'C02p11060' => 'bna', 'C03p42990' => 'bna', 'C03p67310' => 'bna', 'C04p56990' => 'bna', 'C04p58660' => 'bna', 'C05p09890' => 'bna', 'C05p59680' => 'bna', 'C06p19830' => 'bna', 'C06p53040' => 'bna', 'C07p15230' => 'bna', 'C08p50070' => 'bna', 'C08p50090' => 'bna', 'C09p38330' => 'bna', 'C09p53940' => 'bna', 'CAN.G1014.1' => 'can', 'CAN.G644.30' => 'can', 'CAN.G84.47' => 'can', 'CAN.G919.8' => 'can', 'CANSAT54G0113' => 'cansat', 'CANSAT54G1286' => 'cansat', 'CANSAT64G1020' => 'cansat', 'CARHR008080' => 'chi', 'CARHR008090' => 'chi', 'CARHR012130' => 'chi', 'CARHR038390' => 'chi', 'CARHR082330' => 'chi', 'CARHR120520' => 'chi', 'CARHR151470' => 'chi', 'CARHR190950' => 'chi', 'Carub.0001s0760' => 'cru', 'Carub.0001s1146' => 'cru', 'Carub.0003s0721' => 'cru', 'Carub.0004s0858' => 'cru', 'Carub.0005s1040' => 'cru', 'Carub.0006s2035' => 'cru', 'Carub.0015s0005' => 'cru', 'Ca_01607_v3' => 'car', 'Ca_01677_v3' => 'car', 'Ca_06087_v3' => 'car', 'Ca_19238_v3' => 'car', 'Ca_19373_v3' => 'car', 'Ca_21079_v3' => 'car', 'CBR_g54016' => 'cbr', 'CBR_g54018' => 'cbr', 'CBR_g54020' => 'cbr', 'Cc01_g09780' => 'ccan', 'Cc01_g11680' => 'ccan', 'Cc02_g15610' => 'ccan', 'Cc05_g04350' => 'ccan', 'Cc09_g01580' => 'ccan', 'CDE01G0795' => 'cde', 'CDE02G2024' => 'cde', 'CDE02G2260' => 'cde', 'CDE02G4561' => 'cde', 'CDE05G2733' => 'cde', 'CDE05G3422' => 'cde', 'CDE06G2003' => 'cde', 'CDE08G0576' => 'cde', 'CDE09G0048' => 'cde', 'CDE11G0805' => 'cde', 'Cfa003644' => 'cfa', 'Cfa006290' => 'cfa', 'Cfa010080' => 'cfa', 'Cfa011376' => 'cfa', 'Cfa011576' => 'cfa', 'Cfa011577' => 'cfa', 'Cfa014389' => 'cfa', 'Ciclev10006044m.g' => 'ccl', 'Ciclev10006954m.g' => 'ccl', 'Ciclev10015131m.g' => 'ccl', 'Ciclev10015580m.g' => 'ccl', 'Ciclev10028359m.g' => 'ccl', 'Ciclev10028573m.g' => 'ccl', 'CiPaw.03G159300' => 'cil', 'CiPaw.04G115100' => 'cil', 'CiPaw.09G092800' => 'cil', 'CiPaw.10G071800' => 'cil', 'CiPaw.13G105800' => 'cil', 'CiPaw.13G141000' => 'cil', 'CiPaw.14G103400' => 'cil', 'ClCG01G012700' => 'cla', 'ClCG01G012720' => 'cla', 'ClCG01G021920' => 'cla', 'ClCG02G008870' => 'cla', 'ClCG02G020840' => 'cla', 'ClCG02G021930' => 'cla', 'COL.COLO4_19302' => 'col', 'COL.COLO4_25262' => 'col', 'COL.COLO4_31788' => 'col', 'Cpa.g.c34684' => 'cpa', 'Cpa.g.c36520.1' => 'cpa', 'Cpa.g.c45626' => 'cpa', 'Cpa.g.sc121.17' => 'cpa', 'Cpa.g.sc13.22' => 'cpa', 'Cpa.g.sc87.88' => 'cpa', 'Cre06.g261800' => 'cre', 'CsaV3_1G014500' => 'csa', 'CsaV3_1G014510' => 'csa', 'CsaV3_2G034880' => 'csa', 'CsaV3_6G014760' => 'csa', 'CsaV3_6G021500' => 'csa', 'CsaV3_6G048980' => 'csa', 'CSS0002511' => 'camsi', 'CSS0007556' => 'camsi', 'CSS0008532' => 'camsi', 'CSS0009709' => 'camsi', 'CSS0010486' => 'camsi', 'CSS0016768' => 'camsi', 'CSS0023512' => 'camsi', 'CSS0025341' => 'camsi', 'CSS0027999' => 'camsi', 'CSS0028944' => 'camsi', 'CSS0032292' => 'camsi', 'CSS0032464' => 'camsi', 'CSS0037153' => 'camsi', 'CSS0039256' => 'camsi', 'CSS0048392' => 'camsi', 'CSS0050458' => 'camsi', 'DCAR_004224' => 'dca', 'DCAR_006147' => 'dca', 'DCAR_006465' => 'dca', 'DCAR_008159' => 'dca', 'DCAR_012164' => 'dca', 'DCAR_019764' => 'dca', 'Dinv05418' => 'din', 'Dinv10839' => 'din', 'Dinv12521' => 'din', 'Dinv13900' => 'din', 'Dinv29426' => 'din', 'Duzib150G0263' => 'dzi', 'Duzib168G1178' => 'dzi', 'Duzib168G1924' => 'dzi', 'Duzib170G0299' => 'dzi', 'Duzib170G0813' => 'dzi', 'Duzib235G1128' => 'dzi', 'Duzib248G1060' => 'dzi', 'ECA232G1910' => 'eca', 'ECA233G4621' => 'eca', 'ECA238G1216' => 'eca', 'ECA238G1784' => 'eca', 'ECA248G1242' => 'eca', 'EL10Ac8g20071' => 'bvu', 'EL10Ac9g21086' => 'bvu', 'EL10Ac9g22407' => 'bvu', 'EL10Ac9g22412' => 'bvu', 'Eucgr.A01119' => 'egr', 'Eucgr.E04043' => 'egr', 'Eucgr.J00428' => 'egr', 'Eucgr.J00958' => 'egr', 'FAN11G3091' => 'fan', 'FAN11G3651' => 'fan', 'FAN16G2566' => 'fan', 'FAN21G3155' => 'fan', 'FAN21G3400' => 'fan', 'FAN21G3543' => 'fan', 'FAN25G0234' => 'fan', 'FAN25G1422' => 'fan', 'FAN25G3392' => 'fan', 'FvH4_3g01940' => 'fve', 'FvH4_3g29870' => 'fve', 'FvH4_3g33680' => 'fve', 'Glyma.09G004200' => 'gma', 'Glyma.11G151288' => 'gma', 'Glyma.11G189100' => 'gma', 'Glyma.12G072500' => 'gma', 'Glyma.12G085500' => 'gma', 'Glyma.12G181800' => 'gma', 'Glyma.12G193000' => 'gma', 'Glyma.13G309300' => 'gma', 'Glyma.13G319000' => 'gma', 'Glyma.17G012600' => 'gma', 'Gohir.A06G148600' => 'ghi', 'Gohir.A07G115800' => 'ghi', 'Gohir.A08G003600' => 'ghi', 'Gohir.A09G093300' => 'ghi', 'Gohir.A09G105400' => 'ghi', 'Gohir.A09G105500' => 'ghi', 'Gohir.D06G154600' => 'ghi', 'Gohir.D07G120200' => 'ghi', 'Gohir.D08G013900' => 'ghi', 'Gohir.D09G093100' => 'ghi', 'Gohir.D09G102200' => 'ghi', 'Gohir.D09G102300' => 'ghi', 'Gorai.001G129400' => 'gra', 'Gorai.004G008200' => 'gra', 'Gorai.006G109800' => 'gra', 'Gorai.006G119500' => 'gra', 'Gorai.006G121300' => 'gra', 'Gorai.010G180700' => 'gra', 'GSVIVG01012716001' => 'vvi', 'GSVIVG01025118001' => 'vvi', 'GSVIVG01030439001' => 'vvi', 'GSVIVG01031397001' => 'vvi', 'HanXRQChr01g0004201' => 'han', 'HanXRQChr02g0054941' => 'han', 'HanXRQChr05g0141811' => 'han', 'HanXRQChr07g0197751' => 'han', 'HanXRQChr11g0346691' => 'han', 'HanXRQChr13g0396971' => 'han', 'HanXRQChr14g0432951' => 'han', 'HanXRQChr14g0452001' => 'han', 'HanXRQChr15g0496681' => 'han', 'HanXRQChr17g0557491' => 'han', 'HanXRQChr17g0557501' => 'han', 'Haze_06809' => 'cav', 'Haze_12852' => 'cav', 'Haze_15850' => 'cav', 'Haze_23446' => 'cav', 'Haze_23942' => 'cav', 'Haze_23943' => 'cav', 'Hma1.2p1_0091F.1_g046450' => 'hma', 'Hma1.2p1_0128F.1_g059910' => 'hma', 'Hma1.2p1_0249F.1_g102260' => 'hma', 'Hma1.2p1_0453F.1_g156190' => 'hma', 'Hma1.2p1_0695F.1_g204380' => 'hma', 'Hma1.2p1_0749F.1_g212650' => 'hma', 'Hma1.2p1_2156F.1_g315420' => 'hma', 'Hma1.2p1_2686F.1_g326940' => 'hma', 'HPP92_006428' => 'vpl', 'HPP92_012069' => 'vpl', 'HPP92_014129' => 'vpl', 'HPP92_014133' => 'vpl', 'HPP92_017315' => 'vpl', 'HPP92_026445' => 'vpl', 'HPP92_026446' => 'vpl', 'Hund00774' => 'sun', 'Hund07682' => 'sun', 'Hund21413' => 'sun', 'Hund23462' => 'sun', 'Hund23463' => 'sun', 'Lalb_Chr03g0027911' => 'lal', 'Lalb_Chr13g0304271' => 'lal', 'Lalb_Chr19g0137471' => 'lal', 'Lalb_Chr22g0350651' => 'lal', 'Lalb_Chr24g0395151' => 'lal', 'Lj1A1231T40' => 'lonja', 'Lj1A221T48' => 'lonja', 'Lj1C924T12' => 'lonja', 'Lj2C993G6' => 'lonja', 'Lj3g0005790' => 'lja', 'Lj3g0015432' => 'lja', 'Lj3g0017722' => 'lja', 'Lj3g0018497' => 'lja', 'Lj4g0025071' => 'lja', 'Lsat_1_v5_gn_1_129680' => 'lsa', 'Lsat_1_v5_gn_2_25321' => 'lsa', 'Lsat_1_v5_gn_2_95461' => 'lsa', 'Lsat_1_v5_gn_4_159620' => 'lsa', 'Lsat_1_v5_gn_6_41301' => 'lsa', 'Lsat_1_v5_gn_6_74660' => 'lsa', 'Lsat_1_v5_gn_7_11520' => 'lsa', 'Lsat_1_v5_gn_9_67680' => 'lsa', 'Manes.04G008300' => 'mes', 'Manes.04G008400' => 'mes', 'Manes.04G026500' => 'mes', 'Manes.10G135300' => 'mes', 'Manes.11G157300' => 'mes', 'Manes.12G074000' => 'mes', 'Manes.16G006200' => 'mes', 'Manes.17G026400' => 'mes', 'Mapoly0024s0086' => 'mpo', 'Mapoly0024s0087' => 'mpo', 'Mapoly0071s0057' => 'mpo', 'Mapoly0204s0012' => 'mpo', 'MBI04_g37681_MAGBIO' => 'mbi', 'MBI05_g17779_MAGBIO' => 'mbi', 'MBI12_g31184_MAGBIO' => 'mbi', 'MBI17_g11083_MAGBIO' => 'mbi', 'MBI18_g03883_MAGBIO' => 'mbi', 'MBI18_g28940_MAGBIO' => 'mbi', 'MCO01G690' => 'mco', 'MD03G1109900' => 'mdo', 'MD03G1134800' => 'mdo', 'MD05G1348000' => 'mdo', 'MD10G1322400' => 'mdo', 'MD11G1123300' => 'mdo', 'MD11G1157600' => 'mdo', 'Medtr2g084875' => 'mtr', 'Medtr2g088130' => 'mtr', 'Medtr4g055310' => 'mtr', 'Medtr4g061070' => 'mtr', 'Medtr4g132250' => 'mtr', 'MELO3C004795.2' => 'cme', 'MELO3C004797.2' => 'cme', 'MELO3C007396.2' => 'cme', 'MELO3C019277.2' => 'cme', 'MELO3C021449.2' => 'cme', 'MELO3C025736.2' => 'cme', 'Migut.D02175' => 'egut', 'Migut.H01573' => 'egut', 'Migut.M01327' => 'egut', 'Migut.N02513' => 'egut', 'MSTRG.14638' => 'ama', 'MSTRG.18632' => 'ama', 'MSTRG.7203' => 'ama', 'Nitab4.5_0000533g0140' => 'nta', 'Nitab4.5_0000888g0150' => 'nta', 'Nitab4.5_0001453g0040' => 'nta', 'Nitab4.5_0002827g0090' => 'nta', 'Nitab4.5_0003082g0040' => 'nta', 'Nitab4.5_0007799g0040' => 'nta', 'Nitab4.5_0008983g0010' => 'nta', 'Nitab4.5_0009017g0020' => 'nta', 'Nn1g02132' => 'nnu', 'Nn1g03492' => 'nnu', 'Nn1g03493' => 'nnu', 'Nn1g03494' => 'nnu', 'Nn1g07164' => 'nnu', 'Nn1g07291' => 'nnu', 'Nn2g10655' => 'nnu', 'Nn2g11652' => 'nnu', 'Nn2g14008' => 'nnu', 'Nn3g17476' => 'nnu', 'Nn3g17477' => 'nnu', 'Nn4g22370' => 'nnu', 'Nn4g25255' => 'nnu', 'Nn5g27755' => 'nnu', 'Nn6g34260' => 'nnu', 'Nn6g35041' => 'nnu', 'Oeu005924.1' => 'oeu', 'Oeu008383.1' => 'oeu', 'Oeu014928.1' => 'oeu', 'Oeu019889.1' => 'oeu', 'Oeu022271.1' => 'oeu', 'Oeu025271.1' => 'oeu', 'Oeu036302.1' => 'oeu', 'Oeu044100.1' => 'oeu', 'Os01g0528300' => 'osa', 'Os03g0286200' => 'osa', 'Os04g0406600' => 'osa', 'Os07g0512000' => 'osa', 'Os07g0694600' => 'osa', 'Os08g0411000' => 'osa', 'Os09g0565700' => 'osa', 'Os09g0566050' => 'osa', 'Os10g0523700' => 'osa', 'Peaxi162Scf00002g00514' => 'pax', 'Peaxi162Scf00047g01817' => 'pax', 'Peaxi162Scf00114g00001' => 'pax', 'Peaxi162Scf00147g00613' => 'pax', 'Peaxi162Scf00389g00425' => 'pax', 'PGR042G1139' => 'pgr', 'PGR042G3273' => 'pgr', 'PGR102G2180' => 'pgr', 'PGR119G0234' => 'pgr', 'PGR119G0668' => 'pgr', 'PGSC0003DMG400007122' => 'stu', 'PGSC0003DMG400016478' => 'stu', 'PGSC0003DMG400025374' => 'stu', 'PGSC0003DMG400026536' => 'stu', 'Phvul.003G079600' => 'pvu', 'Phvul.005G115600' => 'pvu', 'Phvul.005G127100' => 'pvu', 'Phvul.006G149500' => 'pvu', 'Phvul.006G149600' => 'pvu', 'Phvul.011G071800' => 'pvu', 'Phvul.011G090400' => 'pvu', 'Potri.004G013400' => 'ptr', 'Potri.004G188100' => 'ptr', 'Potri.008G195500' => 'ptr', 'Potri.009G148800' => 'ptr', 'Potri.011G004700' => 'ptr', 'Pp3c17_22810' => 'ppa', 'Pp3c18_4480' => 'ppa', 'Pp3c19_13030' => 'ppa', 'Pp3c1_33620' => 'ppa', 'Pp3c2_9380' => 'ppa', 'PRCOL_00001023' => 'pco', 'Prupe.3G216300' => 'ppe', 'Prupe.4G019500' => 'ppe', 'Prupe.6G092500' => 'ppe', 'Prupe.6G119200' => 'ppe', 'Psat0s1945g0080' => 'psa', 'Psat0s4167g0040' => 'psa', 'Psat1g185800' => 'psa', 'Psat4g006440' => 'psa', 'Psat4g006480' => 'psa', 'Psat4g168120' => 'psa', 'Psat5g255680' => 'psa', 'Psat5g261760' => 'psa', 'Psat7g222120' => 'psa', 'PSO063G7252' => 'pso', 'PSO170G4778' => 'pso', 'PSO210G2249' => 'pso', 'PSO339G2411' => 'pso', 'PSO339G2457' => 'pso', 'PSO339G2854' => 'pso', 'PSO339G4288' => 'pso', 'PSO339G4615' => 'pso', 'PSO384G2796' => 'pso', 'PSO384G2940' => 'pso', 'PSO384G4227' => 'pso', 'PSO478G1425' => 'pso', 'PSO541G3863' => 'pso', 'PSO675G0507' => 'pso', 'PSO782G0338' => 'pso', 'PSO832G0644' => 'pso', 'QL01p013664' => 'qlo', 'QL01p036598' => 'qlo', 'QL05p072984' => 'qlo', 'QL08p005768' => 'qlo', 'QL08p032743' => 'qlo', 'QL93p0073_0439' => 'qlo', 'QL93p0073_0444' => 'qlo', 'RcHm_v2.0_Chr5g0002851' => 'rch', 'RcHm_v2.0_Chr5g0055201' => 'rch', 'RcHm_v2.0_Chr5g0061191' => 'rch', 'RcHm_v2.0_Chr7g0203231' => 'rch', 'Rhsim01G0208100' => 'rsi', 'Rhsim01G0208200' => 'rsi', 'Rhsim02G0106500' => 'rsi', 'Rhsim03G0107900' => 'rsi', 'Rhsim06G0163400' => 'rsi', 'Rhsim13G0105200' => 'rsi', 'Sabra04G0006300' => 'sbr', 'Sabra04G0127000' => 'sbr', 'Sabra08G0148700' => 'sbr', 'Sabra09G0117400' => 'sbr', 'SalBow1G3326' => 'sbo', 'SalBow3G3228' => 'sbo', 'SalBow6G1634' => 'sbo', 'SalBow6G3603' => 'sbo', 'SalBow6G5266' => 'sbo', 'SalBow7G2265' => 'sbo', 'SalBow8G0850' => 'sbo', 'SalBow8G2592' => 'sbo', 'Sc05g0009240' => 'sci', 'Sc12g0002300' => 'sci', 'Sc21g0000100' => 'sci', 'Sc21g0004720' => 'sci', 'Sed0002949' => 'sed', 'Sed0004114' => 'sed', 'Sed0004306' => 'sed', 'Sed0006172' => 'sed', 'Sed0008413' => 'sed', 'Sed0013809' => 'sed', 'Sed0019556' => 'sed', 'SEGI_03570' => 'sgi', 'SEGI_07859' => 'sgi', 'SEGI_15042' => 'sgi', 'SEGI_16263' => 'sgi', 'SEGI_16552' => 'sgi', 'SEGI_24331' => 'sgi', 'SEGI_27316' => 'sgi', 'SEGI_29521' => 'sgi', 'SEGI_41342' => 'sgi', 'SGA_v2.0_scaffold27G11617' => 'sas', 'SGA_v2.0_scaffold316G48428' => 'sas', 'SGA_v2.0_scaffold49G18261' => 'sas', 'SGA_v2.0_scaffold7G03831' => 'sas', 'SGA_v2.0_scaffold93G28359' => 'sas', 'SHI02210' => 'shi', 'SHI06028' => 'shi', 'SHI06321' => 'shi', 'SMO111G0012' => 'smo', 'SMO228G0080' => 'smo', 'SMO356G0756' => 'smo', 'Solyc02g080620.3' => 'sly', 'Solyc06g074530.1' => 'sly', 'Solyc11g066890.1' => 'sly', 'Solyc11g072520.3' => 'sly', 'Sopen02g025330' => 'spe', 'Sopen06g031000' => 'spe', 'Sopen09g008240' => 'spe', 'Sopen09g025210' => 'spe', 'Sopen11g026600' => 'spe', 'Sopen11g030170' => 'spe', 'Sp1g10420' => 'spa', 'Sp3g06570' => 'spa', 'Sp4g10660' => 'spa', 'Sp5g16460' => 'spa', 'Sp6g22710' => 'spa', 'TAR365G0112' => 'tar', 'TAR369G0717' => 'tar', 'TAR374G0976' => 'tar', 'TAR623G1128' => 'tar', 'TAR626G1937' => 'tar', 'TAR627G0123' => 'tar', 'TAR628G0305' => 'tar', 'TAR636G1176' => 'tar', 'TAR636G2442' => 'tar', 'THA.LOC104800556' => 'tha', 'THA.LOC104809501' => 'tha', 'THA.LOC104815126' => 'tha', 'THA.LOC104815732' => 'tha', 'THA.LOC104823528' => 'tha', 'Thecc.02G365600' => 'tca', 'Thecc.06G222300' => 'tca', 'Thecc.09G261800' => 'tca', 'Thecc.09G291400' => 'tca', 'Thhalv10003028m.g' => 'esa', 'Thhalv10007886m.g' => 'esa', 'Thhalv10016085m.g' => 'esa', 'Thhalv10016681m.g' => 'esa', 'Thhalv10020951m.g' => 'esa', 'TPR.G15598' => 'tpr', 'TPR.G29305' => 'tpr', 'TPR.G32395' => 'tpr', 'TPR.G36998' => 'tpr', 'TPR.G4227' => 'tpr', 'TWI18G1433' => 'twi', 'TWI31G0755' => 'twi', 'TWI38G0912' => 'twi', 'TWI75G1097' => 'twi', 'TWI75G1619' => 'twi', 'TWI79G1336' => 'twi', 'unitig_0.g943' => 'ugi', 'unitig_0.g944' => 'ugi', 'unitig_22.g6646' => 'ugi', 'unitig_37.g12681' => 'ugi', 'unitig_8.g3290' => 'ugi', 'vmacro03278' => 'vma', 'vmacro12197' => 'vma', 'vmacro14478' => 'vma', 'vmacro15787' => 'vma', 'vmacro15789' => 'vma', 'vmacro15790' => 'vma', 'vmacro15806' => 'vma', 'vmacro22907' => 'vma', 'vmacro22908' => 'vma', 'vmacro22909' => 'vma', 'vmacro23108' => 'vma', 'VMungo0540G0540' => 'vmu', 'VMungo0540G2468' => 'vmu', 'VMungo1080G0390' => 'vmu', 'VMungo1080G1165' => 'vmu', 'VMungo1127G0170' => 'vmu', 'VMungo1127G2099' => 'vmu', 'VMungo1215G3013' => 'vmu', 'Zm00001eb013110' => 'zma', 'Zm00001eb084260' => 'zma', 'Zm00001eb096110' => 'zma', 'Zm00001eb217510' => 'zma', 'Zm00001eb322550' => 'zma', 'Zm00001eb390770' => 'zma', 'Zm00001eb397170' => 'zma', 'Zm00001eb404610' => 'zma', 'Zm00001eb421790' => 'zma' ), 'gf_id' => 'HOM05D000911', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000911' ), 'data_identifier' => 'HOM05D000911', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000911', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27780' => 'bna', 'A03p35380' => 'bna', 'A04p21160' => 'bna', 'A05p40570' => 'bna', 'A06p26900' => 'bna', 'A08p33230' => 'bna', 'A09p65960' => 'bna', 'A10p18290' => 'bna', 'Aa31LG1G12990' => 'aar', 'Aa31LG1G2980' => 'aar', 'Aa31LG4G14320' => 'aar', 'Aa31LG7G11800' => 'aar', 'Aa31sc36G50' => 'aar', 'Aa31sc36G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3721' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5459' => 'aag', 'Actinidia03028' => 'ach', 'Actinidia03753' => 'ach', 'Actinidia04187' => 'ach', 'Actinidia05509' => 'ach', 'Actinidia24180' => 'ach', 'Actinidia26906' => 'ach', 'Actinidia37097' => 'ach', 'Actinidia38249' => 'ach', 'Ah.01g003470' => 'amhyb', 'Ah.01g004580' => 'amhyb', 'Ah.01g014850' => 'amhyb', 'Ah.01g016830' => 'amhyb', 'Ah.14g088000' => 'amhyb', 'AL1G22980' => 'aly', 'AL3G18990' => 'aly', 'AL4G22440' => 'aly', 'AL4G33180' => 'aly', 'AL5G22920' => 'aly', 'AL6G33660' => 'aly', 'AL8G20720' => 'aly', 'Aqoxy1G00935' => 'aox', 'Aqoxy1G02094' => 'aox', 'Aqoxy2G01239' => 'aox', 'Aqoxy4G01870' => 'aox', 'Aqoxy7G00450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.36ZVTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71EM27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5D6C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH3WRE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3NCM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RIM768' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YB5YRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z36GDV' => 'arhy', 'AT1G08250' => 'ath', 'AT1G11790' => 'ath', 'AT2G27820' => 'ath', 'AT3G07630' => 'ath', 'AT3G44720' => 'ath', 'AT5G22630' => 'ath', 'ATR0693G304' => 'atr', 'ATR0794G109' => 'atr', 'ATR0820G120' => 'atr', 'ATR1159G064' => 'atr', 'Atru.chr10.2239' => 'acertr', 'Atru.chr3.3371' => 'acertr', 'Atru.chr6.3202' => 'acertr', 'AUR62006499' => 'cqu', 'AUR62012718' => 'cqu', 'AUR62021938' => 'cqu', 'AUR62023932' => 'cqu', 'AUR62025034' => 'cqu', 'AUR62025035' => 'cqu', 'AUR62038307' => 'cqu', 'AUR62043466' => 'cqu', 'BcaB02g10748' => 'bca', 'BcaB03g13231' => 'bca', 'BcaB03g14689' => 'bca', 'BcaB05g22716' => 'bca', 'BcaB06g28172' => 'bca', 'BcaB08g36413' => 'bca', 'BcaC01g02186' => 'bca', 'BcaC01g04272' => 'bca', 'BcaC02g08080' => 'bca', 'BcaC02g08227' => 'bca', 'BcaC03g13901' => 'bca', 'BcaC04g19593' => 'bca', 'BcaC04g20874' => 'bca', 'BcaC05g29557' => 'bca', 'BcaC06g35505' => 'bca', 'BcaC07g41954' => 'bca', 'BcaC07g41955' => 'bca', 'BcaC07g41956' => 'bca', 'BcaC07g42519' => 'bca', 'BcaC07g42520' => 'bca', 'BcaC07g42523' => 'bca', 'BcaC07g42524' => 'bca', 'BcaC07g42525' => 'bca', 'BcaC08g47480' => 'bca', 'BcaC08g47481' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00530' => 'bna', 'BolC2t07178H' => 'bol', 'BolC3t16567H' => 'bol', 'BolC4t27234H' => 'bol', 'BolC5t29728H' => 'bol', 'BolC5t34622H' => 'bol', 'BolC6t40321H' => 'bol', 'BolC7t42028H' => 'bol', 'BolC8t49125H' => 'bol', 'BolC8t52538H' => 'bol', 'BolC8t52539H' => 'bol', 'BolC9t56681H' => 'bol', 'BolC9t58266H' => 'bol', 'BolSC21t60294H' => 'bol', 'BraA02t05670Z' => 'bra', 'BraA03t12716Z' => 'bra', 'BraA04t17685Z' => 'bra', 'BraA05t22788Z' => 'bra', 'BraA06t24032Z' => 'bra', 'BraA06t25625Z' => 'bra', 'BraA07t27930Z' => 'bra', 'BraA08t35242Z' => 'bra', 'BraA09t38609Z' => 'bra', 'BraA10t43905Z' => 'bra', 'C02p11060' => 'bna', 'C03p42990' => 'bna', 'C03p67310' => 'bna', 'C04p56990' => 'bna', 'C04p58660' => 'bna', 'C05p09890' => 'bna', 'C05p59680' => 'bna', 'C06p19830' => 'bna', 'C06p53040' => 'bna', 'C07p15230' => 'bna', 'C08p50070' => 'bna', 'C08p50090' => 'bna', 'C09p38330' => 'bna', 'C09p53940' => 'bna', 'CAN.G1014.1' => 'can', 'CAN.G644.30' => 'can', 'CAN.G84.47' => 'can', 'CAN.G919.8' => 'can', 'CANSAT54G0113' => 'cansat', 'CANSAT54G1286' => 'cansat', 'CANSAT64G1020' => 'cansat', 'CARHR008080' => 'chi', 'CARHR008090' => 'chi', 'CARHR012130' => 'chi', 'CARHR038390' => 'chi', 'CARHR082330' => 'chi', 'CARHR120520' => 'chi', 'CARHR151470' => 'chi', 'CARHR190950' => 'chi', 'Carub.0001s0760' => 'cru', 'Carub.0001s1146' => 'cru', 'Carub.0003s0721' => 'cru', 'Carub.0004s0858' => 'cru', 'Carub.0005s1040' => 'cru', 'Carub.0006s2035' => 'cru', 'Carub.0015s0005' => 'cru', 'Ca_01607_v3' => 'car', 'Ca_01677_v3' => 'car', 'Ca_06087_v3' => 'car', 'Ca_19238_v3' => 'car', 'Ca_19373_v3' => 'car', 'Ca_21079_v3' => 'car', 'CBR_g54016' => 'cbr', 'CBR_g54018' => 'cbr', 'CBR_g54020' => 'cbr', 'Cc01_g09780' => 'ccan', 'Cc01_g11680' => 'ccan', 'Cc02_g15610' => 'ccan', 'Cc05_g04350' => 'ccan', 'Cc09_g01580' => 'ccan', 'CDE01G0795' => 'cde', 'CDE02G2024' => 'cde', 'CDE02G2260' => 'cde', 'CDE02G4561' => 'cde', 'CDE05G2733' => 'cde', 'CDE05G3422' => 'cde', 'CDE06G2003' => 'cde', 'CDE08G0576' => 'cde', 'CDE09G0048' => 'cde', 'CDE11G0805' => 'cde', 'Cfa003644' => 'cfa', 'Cfa006290' => 'cfa', 'Cfa010080' => 'cfa', 'Cfa011376' => 'cfa', 'Cfa011576' => 'cfa', 'Cfa011577' => 'cfa', 'Cfa014389' => 'cfa', 'Ciclev10006044m.g' => 'ccl', 'Ciclev10006954m.g' => 'ccl', 'Ciclev10015131m.g' => 'ccl', 'Ciclev10015580m.g' => 'ccl', 'Ciclev10028359m.g' => 'ccl', 'Ciclev10028573m.g' => 'ccl', 'CiPaw.03G159300' => 'cil', 'CiPaw.04G115100' => 'cil', 'CiPaw.09G092800' => 'cil', 'CiPaw.10G071800' => 'cil', 'CiPaw.13G105800' => 'cil', 'CiPaw.13G141000' => 'cil', 'CiPaw.14G103400' => 'cil', 'ClCG01G012700' => 'cla', 'ClCG01G012720' => 'cla', 'ClCG01G021920' => 'cla', 'ClCG02G008870' => 'cla', 'ClCG02G020840' => 'cla', 'ClCG02G021930' => 'cla', 'COL.COLO4_19302' => 'col', 'COL.COLO4_25262' => 'col', 'COL.COLO4_31788' => 'col', 'Cpa.g.c34684' => 'cpa', 'Cpa.g.c36520.1' => 'cpa', 'Cpa.g.c45626' => 'cpa', 'Cpa.g.sc121.17' => 'cpa', 'Cpa.g.sc13.22' => 'cpa', 'Cpa.g.sc87.88' => 'cpa', 'Cre06.g261800' => 'cre', 'CsaV3_1G014500' => 'csa', 'CsaV3_1G014510' => 'csa', 'CsaV3_2G034880' => 'csa', 'CsaV3_6G014760' => 'csa', 'CsaV3_6G021500' => 'csa', 'CsaV3_6G048980' => 'csa', 'CSS0002511' => 'camsi', 'CSS0007556' => 'camsi', 'CSS0008532' => 'camsi', 'CSS0009709' => 'camsi', 'CSS0010486' => 'camsi', 'CSS0016768' => 'camsi', 'CSS0023512' => 'camsi', 'CSS0025341' => 'camsi', 'CSS0027999' => 'camsi', 'CSS0028944' => 'camsi', 'CSS0032292' => 'camsi', 'CSS0032464' => 'camsi', 'CSS0037153' => 'camsi', 'CSS0039256' => 'camsi', 'CSS0048392' => 'camsi', 'CSS0050458' => 'camsi', 'DCAR_004224' => 'dca', 'DCAR_006147' => 'dca', 'DCAR_006465' => 'dca', 'DCAR_008159' => 'dca', 'DCAR_012164' => 'dca', 'DCAR_019764' => 'dca', 'Dinv05418' => 'din', 'Dinv10839' => 'din', 'Dinv12521' => 'din', 'Dinv13900' => 'din', 'Dinv29426' => 'din', 'Duzib150G0263' => 'dzi', 'Duzib168G1178' => 'dzi', 'Duzib168G1924' => 'dzi', 'Duzib170G0299' => 'dzi', 'Duzib170G0813' => 'dzi', 'Duzib235G1128' => 'dzi', 'Duzib248G1060' => 'dzi', 'ECA232G1910' => 'eca', 'ECA233G4621' => 'eca', 'ECA238G1216' => 'eca', 'ECA238G1784' => 'eca', 'ECA248G1242' => 'eca', 'EL10Ac8g20071' => 'bvu', 'EL10Ac9g21086' => 'bvu', 'EL10Ac9g22407' => 'bvu', 'EL10Ac9g22412' => 'bvu', 'Eucgr.A01119' => 'egr', 'Eucgr.E04043' => 'egr', 'Eucgr.J00428' => 'egr', 'Eucgr.J00958' => 'egr', 'FAN11G3091' => 'fan', 'FAN11G3651' => 'fan', 'FAN16G2566' => 'fan', 'FAN21G3155' => 'fan', 'FAN21G3400' => 'fan', 'FAN21G3543' => 'fan', 'FAN25G0234' => 'fan', 'FAN25G1422' => 'fan', 'FAN25G3392' => 'fan', 'FvH4_3g01940' => 'fve', 'FvH4_3g29870' => 'fve', 'FvH4_3g33680' => 'fve', 'Glyma.09G004200' => 'gma', 'Glyma.11G151288' => 'gma', 'Glyma.11G189100' => 'gma', 'Glyma.12G072500' => 'gma', 'Glyma.12G085500' => 'gma', 'Glyma.12G181800' => 'gma', 'Glyma.12G193000' => 'gma', 'Glyma.13G309300' => 'gma', 'Glyma.13G319000' => 'gma', 'Glyma.17G012600' => 'gma', 'Gohir.A06G148600' => 'ghi', 'Gohir.A07G115800' => 'ghi', 'Gohir.A08G003600' => 'ghi', 'Gohir.A09G093300' => 'ghi', 'Gohir.A09G105400' => 'ghi', 'Gohir.A09G105500' => 'ghi', 'Gohir.D06G154600' => 'ghi', 'Gohir.D07G120200' => 'ghi', 'Gohir.D08G013900' => 'ghi', 'Gohir.D09G093100' => 'ghi', 'Gohir.D09G102200' => 'ghi', 'Gohir.D09G102300' => 'ghi', 'Gorai.001G129400' => 'gra', 'Gorai.004G008200' => 'gra', 'Gorai.006G109800' => 'gra', 'Gorai.006G119500' => 'gra', 'Gorai.006G121300' => 'gra', 'Gorai.010G180700' => 'gra', 'GSVIVG01012716001' => 'vvi', 'GSVIVG01025118001' => 'vvi', 'GSVIVG01030439001' => 'vvi', 'GSVIVG01031397001' => 'vvi', 'HanXRQChr01g0004201' => 'han', 'HanXRQChr02g0054941' => 'han', 'HanXRQChr05g0141811' => 'han', 'HanXRQChr07g0197751' => 'han', 'HanXRQChr11g0346691' => 'han', 'HanXRQChr13g0396971' => 'han', 'HanXRQChr14g0432951' => 'han', 'HanXRQChr14g0452001' => 'han', 'HanXRQChr15g0496681' => 'han', 'HanXRQChr17g0557491' => 'han', 'HanXRQChr17g0557501' => 'han', 'Haze_06809' => 'cav', 'Haze_12852' => 'cav', 'Haze_15850' => 'cav', 'Haze_23446' => 'cav', 'Haze_23942' => 'cav', 'Haze_23943' => 'cav', 'Hma1.2p1_0091F.1_g046450' => 'hma', 'Hma1.2p1_0128F.1_g059910' => 'hma', 'Hma1.2p1_0249F.1_g102260' => 'hma', 'Hma1.2p1_0453F.1_g156190' => 'hma', 'Hma1.2p1_0695F.1_g204380' => 'hma', 'Hma1.2p1_0749F.1_g212650' => 'hma', 'Hma1.2p1_2156F.1_g315420' => 'hma', 'Hma1.2p1_2686F.1_g326940' => 'hma', 'HPP92_006428' => 'vpl', 'HPP92_012069' => 'vpl', 'HPP92_014129' => 'vpl', 'HPP92_014133' => 'vpl', 'HPP92_017315' => 'vpl', 'HPP92_026445' => 'vpl', 'HPP92_026446' => 'vpl', 'Hund00774' => 'sun', 'Hund07682' => 'sun', 'Hund21413' => 'sun', 'Hund23462' => 'sun', 'Hund23463' => 'sun', 'Lalb_Chr03g0027911' => 'lal', 'Lalb_Chr13g0304271' => 'lal', 'Lalb_Chr19g0137471' => 'lal', 'Lalb_Chr22g0350651' => 'lal', 'Lalb_Chr24g0395151' => 'lal', 'Lj1A1231T40' => 'lonja', 'Lj1A221T48' => 'lonja', 'Lj1C924T12' => 'lonja', 'Lj2C993G6' => 'lonja', 'Lj3g0005790' => 'lja', 'Lj3g0015432' => 'lja', 'Lj3g0017722' => 'lja', 'Lj3g0018497' => 'lja', 'Lj4g0025071' => 'lja', 'Lsat_1_v5_gn_1_129680' => 'lsa', 'Lsat_1_v5_gn_2_25321' => 'lsa', 'Lsat_1_v5_gn_2_95461' => 'lsa', 'Lsat_1_v5_gn_4_159620' => 'lsa', 'Lsat_1_v5_gn_6_41301' => 'lsa', 'Lsat_1_v5_gn_6_74660' => 'lsa', 'Lsat_1_v5_gn_7_11520' => 'lsa', 'Lsat_1_v5_gn_9_67680' => 'lsa', 'Manes.04G008300' => 'mes', 'Manes.04G008400' => 'mes', 'Manes.04G026500' => 'mes', 'Manes.10G135300' => 'mes', 'Manes.11G157300' => 'mes', 'Manes.12G074000' => 'mes', 'Manes.16G006200' => 'mes', 'Manes.17G026400' => 'mes', 'Mapoly0024s0086' => 'mpo', 'Mapoly0024s0087' => 'mpo', 'Mapoly0071s0057' => 'mpo', 'Mapoly0204s0012' => 'mpo', 'MBI04_g37681_MAGBIO' => 'mbi', 'MBI05_g17779_MAGBIO' => 'mbi', 'MBI12_g31184_MAGBIO' => 'mbi', 'MBI17_g11083_MAGBIO' => 'mbi', 'MBI18_g03883_MAGBIO' => 'mbi', 'MBI18_g28940_MAGBIO' => 'mbi', 'MCO01G690' => 'mco', 'MD03G1109900' => 'mdo', 'MD03G1134800' => 'mdo', 'MD05G1348000' => 'mdo', 'MD10G1322400' => 'mdo', 'MD11G1123300' => 'mdo', 'MD11G1157600' => 'mdo', 'Medtr2g084875' => 'mtr', 'Medtr2g088130' => 'mtr', 'Medtr4g055310' => 'mtr', 'Medtr4g061070' => 'mtr', 'Medtr4g132250' => 'mtr', 'MELO3C004795.2' => 'cme', 'MELO3C004797.2' => 'cme', 'MELO3C007396.2' => 'cme', 'MELO3C019277.2' => 'cme', 'MELO3C021449.2' => 'cme', 'MELO3C025736.2' => 'cme', 'Migut.D02175' => 'egut', 'Migut.H01573' => 'egut', 'Migut.M01327' => 'egut', 'Migut.N02513' => 'egut', 'MSTRG.14638' => 'ama', 'MSTRG.18632' => 'ama', 'MSTRG.7203' => 'ama', 'Nitab4.5_0000533g0140' => 'nta', 'Nitab4.5_0000888g0150' => 'nta', 'Nitab4.5_0001453g0040' => 'nta', 'Nitab4.5_0002827g0090' => 'nta', 'Nitab4.5_0003082g0040' => 'nta', 'Nitab4.5_0007799g0040' => 'nta', 'Nitab4.5_0008983g0010' => 'nta', 'Nitab4.5_0009017g0020' => 'nta', 'Nn1g02132' => 'nnu', 'Nn1g03492' => 'nnu', 'Nn1g03493' => 'nnu', 'Nn1g03494' => 'nnu', 'Nn1g07164' => 'nnu', 'Nn1g07291' => 'nnu', 'Nn2g10655' => 'nnu', 'Nn2g11652' => 'nnu', 'Nn2g14008' => 'nnu', 'Nn3g17476' => 'nnu', 'Nn3g17477' => 'nnu', 'Nn4g22370' => 'nnu', 'Nn4g25255' => 'nnu', 'Nn5g27755' => 'nnu', 'Nn6g34260' => 'nnu', 'Nn6g35041' => 'nnu', 'Oeu005924.1' => 'oeu', 'Oeu008383.1' => 'oeu', 'Oeu014928.1' => 'oeu', 'Oeu019889.1' => 'oeu', 'Oeu022271.1' => 'oeu', 'Oeu025271.1' => 'oeu', 'Oeu036302.1' => 'oeu', 'Oeu044100.1' => 'oeu', 'Os01g0528300' => 'osa', 'Os03g0286200' => 'osa', 'Os04g0406600' => 'osa', 'Os07g0512000' => 'osa', 'Os07g0694600' => 'osa', 'Os08g0411000' => 'osa', 'Os09g0565700' => 'osa', 'Os09g0566050' => 'osa', 'Os10g0523700' => 'osa', 'Peaxi162Scf00002g00514' => 'pax', 'Peaxi162Scf00047g01817' => 'pax', 'Peaxi162Scf00114g00001' => 'pax', 'Peaxi162Scf00147g00613' => 'pax', 'Peaxi162Scf00389g00425' => 'pax', 'PGR042G1139' => 'pgr', 'PGR042G3273' => 'pgr', 'PGR102G2180' => 'pgr', 'PGR119G0234' => 'pgr', 'PGR119G0668' => 'pgr', 'PGSC0003DMG400007122' => 'stu', 'PGSC0003DMG400016478' => 'stu', 'PGSC0003DMG400025374' => 'stu', 'PGSC0003DMG400026536' => 'stu', 'Phvul.003G079600' => 'pvu', 'Phvul.005G115600' => 'pvu', 'Phvul.005G127100' => 'pvu', 'Phvul.006G149500' => 'pvu', 'Phvul.006G149600' => 'pvu', 'Phvul.011G071800' => 'pvu', 'Phvul.011G090400' => 'pvu', 'Potri.004G013400' => 'ptr', 'Potri.004G188100' => 'ptr', 'Potri.008G195500' => 'ptr', 'Potri.009G148800' => 'ptr', 'Potri.011G004700' => 'ptr', 'Pp3c17_22810' => 'ppa', 'Pp3c18_4480' => 'ppa', 'Pp3c19_13030' => 'ppa', 'Pp3c1_33620' => 'ppa', 'Pp3c2_9380' => 'ppa', 'PRCOL_00001023' => 'pco', 'Prupe.3G216300' => 'ppe', 'Prupe.4G019500' => 'ppe', 'Prupe.6G092500' => 'ppe', 'Prupe.6G119200' => 'ppe', 'Psat0s1945g0080' => 'psa', 'Psat0s4167g0040' => 'psa', 'Psat1g185800' => 'psa', 'Psat4g006440' => 'psa', 'Psat4g006480' => 'psa', 'Psat4g168120' => 'psa', 'Psat5g255680' => 'psa', 'Psat5g261760' => 'psa', 'Psat7g222120' => 'psa', 'PSO063G7252' => 'pso', 'PSO170G4778' => 'pso', 'PSO210G2249' => 'pso', 'PSO339G2411' => 'pso', 'PSO339G2457' => 'pso', 'PSO339G2854' => 'pso', 'PSO339G4288' => 'pso', 'PSO339G4615' => 'pso', 'PSO384G2796' => 'pso', 'PSO384G2940' => 'pso', 'PSO384G4227' => 'pso', 'PSO478G1425' => 'pso', 'PSO541G3863' => 'pso', 'PSO675G0507' => 'pso', 'PSO782G0338' => 'pso', 'PSO832G0644' => 'pso', 'QL01p013664' => 'qlo', 'QL01p036598' => 'qlo', 'QL05p072984' => 'qlo', 'QL08p005768' => 'qlo', 'QL08p032743' => 'qlo', 'QL93p0073_0439' => 'qlo', 'QL93p0073_0444' => 'qlo', 'RcHm_v2.0_Chr5g0002851' => 'rch', 'RcHm_v2.0_Chr5g0055201' => 'rch', 'RcHm_v2.0_Chr5g0061191' => 'rch', 'RcHm_v2.0_Chr7g0203231' => 'rch', 'Rhsim01G0208100' => 'rsi', 'Rhsim01G0208200' => 'rsi', 'Rhsim02G0106500' => 'rsi', 'Rhsim03G0107900' => 'rsi', 'Rhsim06G0163400' => 'rsi', 'Rhsim13G0105200' => 'rsi', 'Sabra04G0006300' => 'sbr', 'Sabra04G0127000' => 'sbr', 'Sabra08G0148700' => 'sbr', 'Sabra09G0117400' => 'sbr', 'SalBow1G3326' => 'sbo', 'SalBow3G3228' => 'sbo', 'SalBow6G1634' => 'sbo', 'SalBow6G3603' => 'sbo', 'SalBow6G5266' => 'sbo', 'SalBow7G2265' => 'sbo', 'SalBow8G0850' => 'sbo', 'SalBow8G2592' => 'sbo', 'Sc05g0009240' => 'sci', 'Sc12g0002300' => 'sci', 'Sc21g0000100' => 'sci', 'Sc21g0004720' => 'sci', 'Sed0002949' => 'sed', 'Sed0004114' => 'sed', 'Sed0004306' => 'sed', 'Sed0006172' => 'sed', 'Sed0008413' => 'sed', 'Sed0013809' => 'sed', 'Sed0019556' => 'sed', 'SEGI_03570' => 'sgi', 'SEGI_07859' => 'sgi', 'SEGI_15042' => 'sgi', 'SEGI_16263' => 'sgi', 'SEGI_16552' => 'sgi', 'SEGI_24331' => 'sgi', 'SEGI_27316' => 'sgi', 'SEGI_29521' => 'sgi', 'SEGI_41342' => 'sgi', 'SGA_v2.0_scaffold27G11617' => 'sas', 'SGA_v2.0_scaffold316G48428' => 'sas', 'SGA_v2.0_scaffold49G18261' => 'sas', 'SGA_v2.0_scaffold7G03831' => 'sas', 'SGA_v2.0_scaffold93G28359' => 'sas', 'SHI02210' => 'shi', 'SHI06028' => 'shi', 'SHI06321' => 'shi', 'SMO111G0012' => 'smo', 'SMO228G0080' => 'smo', 'SMO356G0756' => 'smo', 'Solyc02g080620.3' => 'sly', 'Solyc06g074530.1' => 'sly', 'Solyc11g066890.1' => 'sly', 'Solyc11g072520.3' => 'sly', 'Sopen02g025330' => 'spe', 'Sopen06g031000' => 'spe', 'Sopen09g008240' => 'spe', 'Sopen09g025210' => 'spe', 'Sopen11g026600' => 'spe', 'Sopen11g030170' => 'spe', 'Sp1g10420' => 'spa', 'Sp3g06570' => 'spa', 'Sp4g10660' => 'spa', 'Sp5g16460' => 'spa', 'Sp6g22710' => 'spa', 'TAR365G0112' => 'tar', 'TAR369G0717' => 'tar', 'TAR374G0976' => 'tar', 'TAR623G1128' => 'tar', 'TAR626G1937' => 'tar', 'TAR627G0123' => 'tar', 'TAR628G0305' => 'tar', 'TAR636G1176' => 'tar', 'TAR636G2442' => 'tar', 'THA.LOC104800556' => 'tha', 'THA.LOC104809501' => 'tha', 'THA.LOC104815126' => 'tha', 'THA.LOC104815732' => 'tha', 'THA.LOC104823528' => 'tha', 'Thecc.02G365600' => 'tca', 'Thecc.06G222300' => 'tca', 'Thecc.09G261800' => 'tca', 'Thecc.09G291400' => 'tca', 'Thhalv10003028m.g' => 'esa', 'Thhalv10007886m.g' => 'esa', 'Thhalv10016085m.g' => 'esa', 'Thhalv10016681m.g' => 'esa', 'Thhalv10020951m.g' => 'esa', 'TPR.G15598' => 'tpr', 'TPR.G29305' => 'tpr', 'TPR.G32395' => 'tpr', 'TPR.G36998' => 'tpr', 'TPR.G4227' => 'tpr', 'TWI18G1433' => 'twi', 'TWI31G0755' => 'twi', 'TWI38G0912' => 'twi', 'TWI75G1097' => 'twi', 'TWI75G1619' => 'twi', 'TWI79G1336' => 'twi', 'unitig_0.g943' => 'ugi', 'unitig_0.g944' => 'ugi', 'unitig_22.g6646' => 'ugi', 'unitig_37.g12681' => 'ugi', 'unitig_8.g3290' => 'ugi', 'vmacro03278' => 'vma', 'vmacro12197' => 'vma', 'vmacro14478' => 'vma', 'vmacro15787' => 'vma', 'vmacro15789' => 'vma', 'vmacro15790' => 'vma', 'vmacro15806' => 'vma', 'vmacro22907' => 'vma', 'vmacro22908' => 'vma', 'vmacro22909' => 'vma', 'vmacro23108' => 'vma', 'VMungo0540G0540' => 'vmu', 'VMungo0540G2468' => 'vmu', 'VMungo1080G0390' => 'vmu', 'VMungo1080G1165' => 'vmu', 'VMungo1127G0170' => 'vmu', 'VMungo1127G2099' => 'vmu', 'VMungo1215G3013' => 'vmu', 'Zm00001eb013110' => 'zma', 'Zm00001eb084260' => 'zma', 'Zm00001eb096110' => 'zma', 'Zm00001eb217510' => 'zma', 'Zm00001eb322550' => 'zma', 'Zm00001eb390770' => 'zma', 'Zm00001eb397170' => 'zma', 'Zm00001eb404610' => 'zma', 'Zm00001eb421790' => 'zma' ) $gf_id = 'HOM05D000911' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000911' ) $data_identifier = 'HOM05D000911' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 16, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 5, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 6, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 8, 'nnu' => (int) 16, 'oeu' => (int) 8, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 5, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 16, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421790' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000911', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27780' => 'bna', 'A03p35380' => 'bna', 'A04p21160' => 'bna', 'A05p40570' => 'bna', 'A06p26900' => 'bna', 'A08p33230' => 'bna', 'A09p65960' => 'bna', 'A10p18290' => 'bna', 'Aa31LG1G12990' => 'aar', 'Aa31LG1G2980' => 'aar', 'Aa31LG4G14320' => 'aar', 'Aa31LG7G11800' => 'aar', 'Aa31sc36G50' => 'aar', 'Aa31sc36G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3721' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5459' => 'aag', 'Actinidia03028' => 'ach', 'Actinidia03753' => 'ach', 'Actinidia04187' => 'ach', 'Actinidia05509' => 'ach', 'Actinidia24180' => 'ach', 'Actinidia26906' => 'ach', 'Actinidia37097' => 'ach', 'Actinidia38249' => 'ach', 'Ah.01g003470' => 'amhyb', 'Ah.01g004580' => 'amhyb', 'Ah.01g014850' => 'amhyb', 'Ah.01g016830' => 'amhyb', 'Ah.14g088000' => 'amhyb', 'AL1G22980' => 'aly', 'AL3G18990' => 'aly', 'AL4G22440' => 'aly', 'AL4G33180' => 'aly', 'AL5G22920' => 'aly', 'AL6G33660' => 'aly', 'AL8G20720' => 'aly', 'Aqoxy1G00935' => 'aox', 'Aqoxy1G02094' => 'aox', 'Aqoxy2G01239' => 'aox', 'Aqoxy4G01870' => 'aox', 'Aqoxy7G00450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.36ZVTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71EM27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5D6C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH3WRE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3NCM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RIM768' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YB5YRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z36GDV' => 'arhy', 'AT1G08250' => 'ath', 'AT1G11790' => 'ath', 'AT2G27820' => 'ath', 'AT3G07630' => 'ath', 'AT3G44720' => 'ath', 'AT5G22630' => 'ath', 'ATR0693G304' => 'atr', 'ATR0794G109' => 'atr', 'ATR0820G120' => 'atr', 'ATR1159G064' => 'atr', 'Atru.chr10.2239' => 'acertr', 'Atru.chr3.3371' => 'acertr', 'Atru.chr6.3202' => 'acertr', 'AUR62006499' => 'cqu', 'AUR62012718' => 'cqu', 'AUR62021938' => 'cqu', 'AUR62023932' => 'cqu', 'AUR62025034' => 'cqu', 'AUR62025035' => 'cqu', 'AUR62038307' => 'cqu', 'AUR62043466' => 'cqu', 'BcaB02g10748' => 'bca', 'BcaB03g13231' => 'bca', 'BcaB03g14689' => 'bca', 'BcaB05g22716' => 'bca', 'BcaB06g28172' => 'bca', 'BcaB08g36413' => 'bca', 'BcaC01g02186' => 'bca', 'BcaC01g04272' => 'bca', 'BcaC02g08080' => 'bca', 'BcaC02g08227' => 'bca', 'BcaC03g13901' => 'bca', 'BcaC04g19593' => 'bca', 'BcaC04g20874' => 'bca', 'BcaC05g29557' => 'bca', 'BcaC06g35505' => 'bca', 'BcaC07g41954' => 'bca', 'BcaC07g41955' => 'bca', 'BcaC07g41956' => 'bca', 'BcaC07g42519' => 'bca', 'BcaC07g42520' => 'bca', 'BcaC07g42523' => 'bca', 'BcaC07g42524' => 'bca', 'BcaC07g42525' => 'bca', 'BcaC08g47480' => 'bca', 'BcaC08g47481' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00530' => 'bna', 'BolC2t07178H' => 'bol', 'BolC3t16567H' => 'bol', 'BolC4t27234H' => 'bol', 'BolC5t29728H' => 'bol', 'BolC5t34622H' => 'bol', 'BolC6t40321H' => 'bol', 'BolC7t42028H' => 'bol', 'BolC8t49125H' => 'bol', 'BolC8t52538H' => 'bol', 'BolC8t52539H' => 'bol', 'BolC9t56681H' => 'bol', 'BolC9t58266H' => 'bol', 'BolSC21t60294H' => 'bol', 'BraA02t05670Z' => 'bra', 'BraA03t12716Z' => 'bra', 'BraA04t17685Z' => 'bra', 'BraA05t22788Z' => 'bra', 'BraA06t24032Z' => 'bra', 'BraA06t25625Z' => 'bra', 'BraA07t27930Z' => 'bra', 'BraA08t35242Z' => 'bra', 'BraA09t38609Z' => 'bra', 'BraA10t43905Z' => 'bra', 'C02p11060' => 'bna', 'C03p42990' => 'bna', 'C03p67310' => 'bna', 'C04p56990' => 'bna', 'C04p58660' => 'bna', 'C05p09890' => 'bna', 'C05p59680' => 'bna', 'C06p19830' => 'bna', 'C06p53040' => 'bna', 'C07p15230' => 'bna', 'C08p50070' => 'bna', 'C08p50090' => 'bna', 'C09p38330' => 'bna', 'C09p53940' => 'bna', 'CAN.G1014.1' => 'can', 'CAN.G644.30' => 'can', 'CAN.G84.47' => 'can', 'CAN.G919.8' => 'can', 'CANSAT54G0113' => 'cansat', 'CANSAT54G1286' => 'cansat', 'CANSAT64G1020' => 'cansat', 'CARHR008080' => 'chi', 'CARHR008090' => 'chi', 'CARHR012130' => 'chi', 'CARHR038390' => 'chi', 'CARHR082330' => 'chi', 'CARHR120520' => 'chi', 'CARHR151470' => 'chi', 'CARHR190950' => 'chi', 'Carub.0001s0760' => 'cru', 'Carub.0001s1146' => 'cru', 'Carub.0003s0721' => 'cru', 'Carub.0004s0858' => 'cru', 'Carub.0005s1040' => 'cru', 'Carub.0006s2035' => 'cru', 'Carub.0015s0005' => 'cru', 'Ca_01607_v3' => 'car', 'Ca_01677_v3' => 'car', 'Ca_06087_v3' => 'car', 'Ca_19238_v3' => 'car', 'Ca_19373_v3' => 'car', 'Ca_21079_v3' => 'car', 'CBR_g54016' => 'cbr', 'CBR_g54018' => 'cbr', 'CBR_g54020' => 'cbr', 'Cc01_g09780' => 'ccan', 'Cc01_g11680' => 'ccan', 'Cc02_g15610' => 'ccan', 'Cc05_g04350' => 'ccan', 'Cc09_g01580' => 'ccan', 'CDE01G0795' => 'cde', 'CDE02G2024' => 'cde', 'CDE02G2260' => 'cde', 'CDE02G4561' => 'cde', 'CDE05G2733' => 'cde', 'CDE05G3422' => 'cde', 'CDE06G2003' => 'cde', 'CDE08G0576' => 'cde', 'CDE09G0048' => 'cde', 'CDE11G0805' => 'cde', 'Cfa003644' => 'cfa', 'Cfa006290' => 'cfa', 'Cfa010080' => 'cfa', 'Cfa011376' => 'cfa', 'Cfa011576' => 'cfa', 'Cfa011577' => 'cfa', 'Cfa014389' => 'cfa', 'Ciclev10006044m.g' => 'ccl', 'Ciclev10006954m.g' => 'ccl', 'Ciclev10015131m.g' => 'ccl', 'Ciclev10015580m.g' => 'ccl', 'Ciclev10028359m.g' => 'ccl', 'Ciclev10028573m.g' => 'ccl', 'CiPaw.03G159300' => 'cil', 'CiPaw.04G115100' => 'cil', 'CiPaw.09G092800' => 'cil', 'CiPaw.10G071800' => 'cil', 'CiPaw.13G105800' => 'cil', 'CiPaw.13G141000' => 'cil', 'CiPaw.14G103400' => 'cil', 'ClCG01G012700' => 'cla', 'ClCG01G012720' => 'cla', 'ClCG01G021920' => 'cla', 'ClCG02G008870' => 'cla', 'ClCG02G020840' => 'cla', 'ClCG02G021930' => 'cla', 'COL.COLO4_19302' => 'col', 'COL.COLO4_25262' => 'col', 'COL.COLO4_31788' => 'col', 'Cpa.g.c34684' => 'cpa', 'Cpa.g.c36520.1' => 'cpa', 'Cpa.g.c45626' => 'cpa', 'Cpa.g.sc121.17' => 'cpa', 'Cpa.g.sc13.22' => 'cpa', 'Cpa.g.sc87.88' => 'cpa', 'Cre06.g261800' => 'cre', 'CsaV3_1G014500' => 'csa', 'CsaV3_1G014510' => 'csa', 'CsaV3_2G034880' => 'csa', 'CsaV3_6G014760' => 'csa', 'CsaV3_6G021500' => 'csa', 'CsaV3_6G048980' => 'csa', 'CSS0002511' => 'camsi', 'CSS0007556' => 'camsi', 'CSS0008532' => 'camsi', 'CSS0009709' => 'camsi', 'CSS0010486' => 'camsi', 'CSS0016768' => 'camsi', 'CSS0023512' => 'camsi', 'CSS0025341' => 'camsi', 'CSS0027999' => 'camsi', 'CSS0028944' => 'camsi', 'CSS0032292' => 'camsi', 'CSS0032464' => 'camsi', 'CSS0037153' => 'camsi', 'CSS0039256' => 'camsi', 'CSS0048392' => 'camsi', 'CSS0050458' => 'camsi', 'DCAR_004224' => 'dca', 'DCAR_006147' => 'dca', 'DCAR_006465' => 'dca', 'DCAR_008159' => 'dca', 'DCAR_012164' => 'dca', 'DCAR_019764' => 'dca', 'Dinv05418' => 'din', 'Dinv10839' => 'din', 'Dinv12521' => 'din', 'Dinv13900' => 'din', 'Dinv29426' => 'din', 'Duzib150G0263' => 'dzi', 'Duzib168G1178' => 'dzi', 'Duzib168G1924' => 'dzi', 'Duzib170G0299' => 'dzi', 'Duzib170G0813' => 'dzi', 'Duzib235G1128' => 'dzi', 'Duzib248G1060' => 'dzi', 'ECA232G1910' => 'eca', 'ECA233G4621' => 'eca', 'ECA238G1216' => 'eca', 'ECA238G1784' => 'eca', 'ECA248G1242' => 'eca', 'EL10Ac8g20071' => 'bvu', 'EL10Ac9g21086' => 'bvu', 'EL10Ac9g22407' => 'bvu', 'EL10Ac9g22412' => 'bvu', 'Eucgr.A01119' => 'egr', 'Eucgr.E04043' => 'egr', 'Eucgr.J00428' => 'egr', 'Eucgr.J00958' => 'egr', 'FAN11G3091' => 'fan', 'FAN11G3651' => 'fan', 'FAN16G2566' => 'fan', 'FAN21G3155' => 'fan', 'FAN21G3400' => 'fan', 'FAN21G3543' => 'fan', 'FAN25G0234' => 'fan', 'FAN25G1422' => 'fan', 'FAN25G3392' => 'fan', 'FvH4_3g01940' => 'fve', 'FvH4_3g29870' => 'fve', 'FvH4_3g33680' => 'fve', 'Glyma.09G004200' => 'gma', 'Glyma.11G151288' => 'gma', 'Glyma.11G189100' => 'gma', 'Glyma.12G072500' => 'gma', 'Glyma.12G085500' => 'gma', 'Glyma.12G181800' => 'gma', 'Glyma.12G193000' => 'gma', 'Glyma.13G309300' => 'gma', 'Glyma.13G319000' => 'gma', 'Glyma.17G012600' => 'gma', 'Gohir.A06G148600' => 'ghi', 'Gohir.A07G115800' => 'ghi', 'Gohir.A08G003600' => 'ghi', 'Gohir.A09G093300' => 'ghi', 'Gohir.A09G105400' => 'ghi', 'Gohir.A09G105500' => 'ghi', 'Gohir.D06G154600' => 'ghi', 'Gohir.D07G120200' => 'ghi', 'Gohir.D08G013900' => 'ghi', 'Gohir.D09G093100' => 'ghi', 'Gohir.D09G102200' => 'ghi', 'Gohir.D09G102300' => 'ghi', 'Gorai.001G129400' => 'gra', 'Gorai.004G008200' => 'gra', 'Gorai.006G109800' => 'gra', 'Gorai.006G119500' => 'gra', 'Gorai.006G121300' => 'gra', 'Gorai.010G180700' => 'gra', 'GSVIVG01012716001' => 'vvi', 'GSVIVG01025118001' => 'vvi', 'GSVIVG01030439001' => 'vvi', 'GSVIVG01031397001' => 'vvi', 'HanXRQChr01g0004201' => 'han', 'HanXRQChr02g0054941' => 'han', 'HanXRQChr05g0141811' => 'han', 'HanXRQChr07g0197751' => 'han', 'HanXRQChr11g0346691' => 'han', 'HanXRQChr13g0396971' => 'han', 'HanXRQChr14g0432951' => 'han', 'HanXRQChr14g0452001' => 'han', 'HanXRQChr15g0496681' => 'han', 'HanXRQChr17g0557491' => 'han', 'HanXRQChr17g0557501' => 'han', 'Haze_06809' => 'cav', 'Haze_12852' => 'cav', 'Haze_15850' => 'cav', 'Haze_23446' => 'cav', 'Haze_23942' => 'cav', 'Haze_23943' => 'cav', 'Hma1.2p1_0091F.1_g046450' => 'hma', 'Hma1.2p1_0128F.1_g059910' => 'hma', 'Hma1.2p1_0249F.1_g102260' => 'hma', 'Hma1.2p1_0453F.1_g156190' => 'hma', 'Hma1.2p1_0695F.1_g204380' => 'hma', 'Hma1.2p1_0749F.1_g212650' => 'hma', 'Hma1.2p1_2156F.1_g315420' => 'hma', 'Hma1.2p1_2686F.1_g326940' => 'hma', 'HPP92_006428' => 'vpl', 'HPP92_012069' => 'vpl', 'HPP92_014129' => 'vpl', 'HPP92_014133' => 'vpl', 'HPP92_017315' => 'vpl', 'HPP92_026445' => 'vpl', 'HPP92_026446' => 'vpl', 'Hund00774' => 'sun', 'Hund07682' => 'sun', 'Hund21413' => 'sun', 'Hund23462' => 'sun', 'Hund23463' => 'sun', 'Lalb_Chr03g0027911' => 'lal', 'Lalb_Chr13g0304271' => 'lal', 'Lalb_Chr19g0137471' => 'lal', 'Lalb_Chr22g0350651' => 'lal', 'Lalb_Chr24g0395151' => 'lal', 'Lj1A1231T40' => 'lonja', 'Lj1A221T48' => 'lonja', 'Lj1C924T12' => 'lonja', 'Lj2C993G6' => 'lonja', 'Lj3g0005790' => 'lja', 'Lj3g0015432' => 'lja', 'Lj3g0017722' => 'lja', 'Lj3g0018497' => 'lja', 'Lj4g0025071' => 'lja', 'Lsat_1_v5_gn_1_129680' => 'lsa', 'Lsat_1_v5_gn_2_25321' => 'lsa', 'Lsat_1_v5_gn_2_95461' => 'lsa', 'Lsat_1_v5_gn_4_159620' => 'lsa', 'Lsat_1_v5_gn_6_41301' => 'lsa', 'Lsat_1_v5_gn_6_74660' => 'lsa', 'Lsat_1_v5_gn_7_11520' => 'lsa', 'Lsat_1_v5_gn_9_67680' => 'lsa', 'Manes.04G008300' => 'mes', 'Manes.04G008400' => 'mes', 'Manes.04G026500' => 'mes', 'Manes.10G135300' => 'mes', 'Manes.11G157300' => 'mes', 'Manes.12G074000' => 'mes', 'Manes.16G006200' => 'mes', 'Manes.17G026400' => 'mes', 'Mapoly0024s0086' => 'mpo', 'Mapoly0024s0087' => 'mpo', 'Mapoly0071s0057' => 'mpo', 'Mapoly0204s0012' => 'mpo', 'MBI04_g37681_MAGBIO' => 'mbi', 'MBI05_g17779_MAGBIO' => 'mbi', 'MBI12_g31184_MAGBIO' => 'mbi', 'MBI17_g11083_MAGBIO' => 'mbi', 'MBI18_g03883_MAGBIO' => 'mbi', 'MBI18_g28940_MAGBIO' => 'mbi', 'MCO01G690' => 'mco', 'MD03G1109900' => 'mdo', 'MD03G1134800' => 'mdo', 'MD05G1348000' => 'mdo', 'MD10G1322400' => 'mdo', 'MD11G1123300' => 'mdo', 'MD11G1157600' => 'mdo', 'Medtr2g084875' => 'mtr', 'Medtr2g088130' => 'mtr', 'Medtr4g055310' => 'mtr', 'Medtr4g061070' => 'mtr', 'Medtr4g132250' => 'mtr', 'MELO3C004795.2' => 'cme', 'MELO3C004797.2' => 'cme', 'MELO3C007396.2' => 'cme', 'MELO3C019277.2' => 'cme', 'MELO3C021449.2' => 'cme', 'MELO3C025736.2' => 'cme', 'Migut.D02175' => 'egut', 'Migut.H01573' => 'egut', 'Migut.M01327' => 'egut', 'Migut.N02513' => 'egut', 'MSTRG.14638' => 'ama', 'MSTRG.18632' => 'ama', 'MSTRG.7203' => 'ama', 'Nitab4.5_0000533g0140' => 'nta', 'Nitab4.5_0000888g0150' => 'nta', 'Nitab4.5_0001453g0040' => 'nta', 'Nitab4.5_0002827g0090' => 'nta', 'Nitab4.5_0003082g0040' => 'nta', 'Nitab4.5_0007799g0040' => 'nta', 'Nitab4.5_0008983g0010' => 'nta', 'Nitab4.5_0009017g0020' => 'nta', 'Nn1g02132' => 'nnu', 'Nn1g03492' => 'nnu', 'Nn1g03493' => 'nnu', 'Nn1g03494' => 'nnu', 'Nn1g07164' => 'nnu', 'Nn1g07291' => 'nnu', 'Nn2g10655' => 'nnu', 'Nn2g11652' => 'nnu', 'Nn2g14008' => 'nnu', 'Nn3g17476' => 'nnu', 'Nn3g17477' => 'nnu', 'Nn4g22370' => 'nnu', 'Nn4g25255' => 'nnu', 'Nn5g27755' => 'nnu', 'Nn6g34260' => 'nnu', 'Nn6g35041' => 'nnu', 'Oeu005924.1' => 'oeu', 'Oeu008383.1' => 'oeu', 'Oeu014928.1' => 'oeu', 'Oeu019889.1' => 'oeu', 'Oeu022271.1' => 'oeu', 'Oeu025271.1' => 'oeu', 'Oeu036302.1' => 'oeu', 'Oeu044100.1' => 'oeu', 'Os01g0528300' => 'osa', 'Os03g0286200' => 'osa', 'Os04g0406600' => 'osa', 'Os07g0512000' => 'osa', 'Os07g0694600' => 'osa', 'Os08g0411000' => 'osa', 'Os09g0565700' => 'osa', 'Os09g0566050' => 'osa', 'Os10g0523700' => 'osa', 'Peaxi162Scf00002g00514' => 'pax', 'Peaxi162Scf00047g01817' => 'pax', 'Peaxi162Scf00114g00001' => 'pax', 'Peaxi162Scf00147g00613' => 'pax', 'Peaxi162Scf00389g00425' => 'pax', 'PGR042G1139' => 'pgr', 'PGR042G3273' => 'pgr', 'PGR102G2180' => 'pgr', 'PGR119G0234' => 'pgr', 'PGR119G0668' => 'pgr', 'PGSC0003DMG400007122' => 'stu', 'PGSC0003DMG400016478' => 'stu', 'PGSC0003DMG400025374' => 'stu', 'PGSC0003DMG400026536' => 'stu', 'Phvul.003G079600' => 'pvu', 'Phvul.005G115600' => 'pvu', 'Phvul.005G127100' => 'pvu', 'Phvul.006G149500' => 'pvu', 'Phvul.006G149600' => 'pvu', 'Phvul.011G071800' => 'pvu', 'Phvul.011G090400' => 'pvu', 'Potri.004G013400' => 'ptr', 'Potri.004G188100' => 'ptr', 'Potri.008G195500' => 'ptr', 'Potri.009G148800' => 'ptr', 'Potri.011G004700' => 'ptr', 'Pp3c17_22810' => 'ppa', 'Pp3c18_4480' => 'ppa', 'Pp3c19_13030' => 'ppa', 'Pp3c1_33620' => 'ppa', 'Pp3c2_9380' => 'ppa', 'PRCOL_00001023' => 'pco', 'Prupe.3G216300' => 'ppe', 'Prupe.4G019500' => 'ppe', 'Prupe.6G092500' => 'ppe', 'Prupe.6G119200' => 'ppe', 'Psat0s1945g0080' => 'psa', 'Psat0s4167g0040' => 'psa', 'Psat1g185800' => 'psa', 'Psat4g006440' => 'psa', 'Psat4g006480' => 'psa', 'Psat4g168120' => 'psa', 'Psat5g255680' => 'psa', 'Psat5g261760' => 'psa', 'Psat7g222120' => 'psa', 'PSO063G7252' => 'pso', 'PSO170G4778' => 'pso', 'PSO210G2249' => 'pso', 'PSO339G2411' => 'pso', 'PSO339G2457' => 'pso', 'PSO339G2854' => 'pso', 'PSO339G4288' => 'pso', 'PSO339G4615' => 'pso', 'PSO384G2796' => 'pso', 'PSO384G2940' => 'pso', 'PSO384G4227' => 'pso', 'PSO478G1425' => 'pso', 'PSO541G3863' => 'pso', 'PSO675G0507' => 'pso', 'PSO782G0338' => 'pso', 'PSO832G0644' => 'pso', 'QL01p013664' => 'qlo', 'QL01p036598' => 'qlo', 'QL05p072984' => 'qlo', 'QL08p005768' => 'qlo', 'QL08p032743' => 'qlo', 'QL93p0073_0439' => 'qlo', 'QL93p0073_0444' => 'qlo', 'RcHm_v2.0_Chr5g0002851' => 'rch', 'RcHm_v2.0_Chr5g0055201' => 'rch', 'RcHm_v2.0_Chr5g0061191' => 'rch', 'RcHm_v2.0_Chr7g0203231' => 'rch', 'Rhsim01G0208100' => 'rsi', 'Rhsim01G0208200' => 'rsi', 'Rhsim02G0106500' => 'rsi', 'Rhsim03G0107900' => 'rsi', 'Rhsim06G0163400' => 'rsi', 'Rhsim13G0105200' => 'rsi', 'Sabra04G0006300' => 'sbr', 'Sabra04G0127000' => 'sbr', 'Sabra08G0148700' => 'sbr', 'Sabra09G0117400' => 'sbr', 'SalBow1G3326' => 'sbo', 'SalBow3G3228' => 'sbo', 'SalBow6G1634' => 'sbo', 'SalBow6G3603' => 'sbo', 'SalBow6G5266' => 'sbo', 'SalBow7G2265' => 'sbo', 'SalBow8G0850' => 'sbo', 'SalBow8G2592' => 'sbo', 'Sc05g0009240' => 'sci', 'Sc12g0002300' => 'sci', 'Sc21g0000100' => 'sci', 'Sc21g0004720' => 'sci', 'Sed0002949' => 'sed', 'Sed0004114' => 'sed', 'Sed0004306' => 'sed', 'Sed0006172' => 'sed', 'Sed0008413' => 'sed', 'Sed0013809' => 'sed', 'Sed0019556' => 'sed', 'SEGI_03570' => 'sgi', 'SEGI_07859' => 'sgi', 'SEGI_15042' => 'sgi', 'SEGI_16263' => 'sgi', 'SEGI_16552' => 'sgi', 'SEGI_24331' => 'sgi', 'SEGI_27316' => 'sgi', 'SEGI_29521' => 'sgi', 'SEGI_41342' => 'sgi', 'SGA_v2.0_scaffold27G11617' => 'sas', 'SGA_v2.0_scaffold316G48428' => 'sas', 'SGA_v2.0_scaffold49G18261' => 'sas', 'SGA_v2.0_scaffold7G03831' => 'sas', 'SGA_v2.0_scaffold93G28359' => 'sas', 'SHI02210' => 'shi', 'SHI06028' => 'shi', 'SHI06321' => 'shi', 'SMO111G0012' => 'smo', 'SMO228G0080' => 'smo', 'SMO356G0756' => 'smo', 'Solyc02g080620.3' => 'sly', 'Solyc06g074530.1' => 'sly', 'Solyc11g066890.1' => 'sly', 'Solyc11g072520.3' => 'sly', 'Sopen02g025330' => 'spe', 'Sopen06g031000' => 'spe', 'Sopen09g008240' => 'spe', 'Sopen09g025210' => 'spe', 'Sopen11g026600' => 'spe', 'Sopen11g030170' => 'spe', 'Sp1g10420' => 'spa', 'Sp3g06570' => 'spa', 'Sp4g10660' => 'spa', 'Sp5g16460' => 'spa', 'Sp6g22710' => 'spa', 'TAR365G0112' => 'tar', 'TAR369G0717' => 'tar', 'TAR374G0976' => 'tar', 'TAR623G1128' => 'tar', 'TAR626G1937' => 'tar', 'TAR627G0123' => 'tar', 'TAR628G0305' => 'tar', 'TAR636G1176' => 'tar', 'TAR636G2442' => 'tar', 'THA.LOC104800556' => 'tha', 'THA.LOC104809501' => 'tha', 'THA.LOC104815126' => 'tha', 'THA.LOC104815732' => 'tha', 'THA.LOC104823528' => 'tha', 'Thecc.02G365600' => 'tca', 'Thecc.06G222300' => 'tca', 'Thecc.09G261800' => 'tca', 'Thecc.09G291400' => 'tca', 'Thhalv10003028m.g' => 'esa', 'Thhalv10007886m.g' => 'esa', 'Thhalv10016085m.g' => 'esa', 'Thhalv10016681m.g' => 'esa', 'Thhalv10020951m.g' => 'esa', 'TPR.G15598' => 'tpr', 'TPR.G29305' => 'tpr', 'TPR.G32395' => 'tpr', 'TPR.G36998' => 'tpr', 'TPR.G4227' => 'tpr', 'TWI18G1433' => 'twi', 'TWI31G0755' => 'twi', 'TWI38G0912' => 'twi', 'TWI75G1097' => 'twi', 'TWI75G1619' => 'twi', 'TWI79G1336' => 'twi', 'unitig_0.g943' => 'ugi', 'unitig_0.g944' => 'ugi', 'unitig_22.g6646' => 'ugi', 'unitig_37.g12681' => 'ugi', 'unitig_8.g3290' => 'ugi', 'vmacro03278' => 'vma', 'vmacro12197' => 'vma', 'vmacro14478' => 'vma', 'vmacro15787' => 'vma', 'vmacro15789' => 'vma', 'vmacro15790' => 'vma', 'vmacro15806' => 'vma', 'vmacro22907' => 'vma', 'vmacro22908' => 'vma', 'vmacro22909' => 'vma', 'vmacro23108' => 'vma', 'VMungo0540G0540' => 'vmu', 'VMungo0540G2468' => 'vmu', 'VMungo1080G0390' => 'vmu', 'VMungo1080G1165' => 'vmu', 'VMungo1127G0170' => 'vmu', 'VMungo1127G2099' => 'vmu', 'VMungo1215G3013' => 'vmu', 'Zm00001eb013110' => 'zma', 'Zm00001eb084260' => 'zma', 'Zm00001eb096110' => 'zma', 'Zm00001eb217510' => 'zma', 'Zm00001eb322550' => 'zma', 'Zm00001eb390770' => 'zma', 'Zm00001eb397170' => 'zma', 'Zm00001eb404610' => 'zma', 'Zm00001eb421790' => 'zma' ), 'gf_id' => 'HOM05D000911', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000911' ), 'data_identifier' => 'HOM05D000911', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000911', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27780' => 'bna', 'A03p35380' => 'bna', 'A04p21160' => 'bna', 'A05p40570' => 'bna', 'A06p26900' => 'bna', 'A08p33230' => 'bna', 'A09p65960' => 'bna', 'A10p18290' => 'bna', 'Aa31LG1G12990' => 'aar', 'Aa31LG1G2980' => 'aar', 'Aa31LG4G14320' => 'aar', 'Aa31LG7G11800' => 'aar', 'Aa31sc36G50' => 'aar', 'Aa31sc36G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3721' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5459' => 'aag', 'Actinidia03028' => 'ach', 'Actinidia03753' => 'ach', 'Actinidia04187' => 'ach', 'Actinidia05509' => 'ach', 'Actinidia24180' => 'ach', 'Actinidia26906' => 'ach', 'Actinidia37097' => 'ach', 'Actinidia38249' => 'ach', 'Ah.01g003470' => 'amhyb', 'Ah.01g004580' => 'amhyb', 'Ah.01g014850' => 'amhyb', 'Ah.01g016830' => 'amhyb', 'Ah.14g088000' => 'amhyb', 'AL1G22980' => 'aly', 'AL3G18990' => 'aly', 'AL4G22440' => 'aly', 'AL4G33180' => 'aly', 'AL5G22920' => 'aly', 'AL6G33660' => 'aly', 'AL8G20720' => 'aly', 'Aqoxy1G00935' => 'aox', 'Aqoxy1G02094' => 'aox', 'Aqoxy2G01239' => 'aox', 'Aqoxy4G01870' => 'aox', 'Aqoxy7G00450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.36ZVTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71EM27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5D6C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH3WRE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3NCM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RIM768' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YB5YRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z36GDV' => 'arhy', 'AT1G08250' => 'ath', 'AT1G11790' => 'ath', 'AT2G27820' => 'ath', 'AT3G07630' => 'ath', 'AT3G44720' => 'ath', 'AT5G22630' => 'ath', 'ATR0693G304' => 'atr', 'ATR0794G109' => 'atr', 'ATR0820G120' => 'atr', 'ATR1159G064' => 'atr', 'Atru.chr10.2239' => 'acertr', 'Atru.chr3.3371' => 'acertr', 'Atru.chr6.3202' => 'acertr', 'AUR62006499' => 'cqu', 'AUR62012718' => 'cqu', 'AUR62021938' => 'cqu', 'AUR62023932' => 'cqu', 'AUR62025034' => 'cqu', 'AUR62025035' => 'cqu', 'AUR62038307' => 'cqu', 'AUR62043466' => 'cqu', 'BcaB02g10748' => 'bca', 'BcaB03g13231' => 'bca', 'BcaB03g14689' => 'bca', 'BcaB05g22716' => 'bca', 'BcaB06g28172' => 'bca', 'BcaB08g36413' => 'bca', 'BcaC01g02186' => 'bca', 'BcaC01g04272' => 'bca', 'BcaC02g08080' => 'bca', 'BcaC02g08227' => 'bca', 'BcaC03g13901' => 'bca', 'BcaC04g19593' => 'bca', 'BcaC04g20874' => 'bca', 'BcaC05g29557' => 'bca', 'BcaC06g35505' => 'bca', 'BcaC07g41954' => 'bca', 'BcaC07g41955' => 'bca', 'BcaC07g41956' => 'bca', 'BcaC07g42519' => 'bca', 'BcaC07g42520' => 'bca', 'BcaC07g42523' => 'bca', 'BcaC07g42524' => 'bca', 'BcaC07g42525' => 'bca', 'BcaC08g47480' => 'bca', 'BcaC08g47481' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00530' => 'bna', 'BolC2t07178H' => 'bol', 'BolC3t16567H' => 'bol', 'BolC4t27234H' => 'bol', 'BolC5t29728H' => 'bol', 'BolC5t34622H' => 'bol', 'BolC6t40321H' => 'bol', 'BolC7t42028H' => 'bol', 'BolC8t49125H' => 'bol', 'BolC8t52538H' => 'bol', 'BolC8t52539H' => 'bol', 'BolC9t56681H' => 'bol', 'BolC9t58266H' => 'bol', 'BolSC21t60294H' => 'bol', 'BraA02t05670Z' => 'bra', 'BraA03t12716Z' => 'bra', 'BraA04t17685Z' => 'bra', 'BraA05t22788Z' => 'bra', 'BraA06t24032Z' => 'bra', 'BraA06t25625Z' => 'bra', 'BraA07t27930Z' => 'bra', 'BraA08t35242Z' => 'bra', 'BraA09t38609Z' => 'bra', 'BraA10t43905Z' => 'bra', 'C02p11060' => 'bna', 'C03p42990' => 'bna', 'C03p67310' => 'bna', 'C04p56990' => 'bna', 'C04p58660' => 'bna', 'C05p09890' => 'bna', 'C05p59680' => 'bna', 'C06p19830' => 'bna', 'C06p53040' => 'bna', 'C07p15230' => 'bna', 'C08p50070' => 'bna', 'C08p50090' => 'bna', 'C09p38330' => 'bna', 'C09p53940' => 'bna', 'CAN.G1014.1' => 'can', 'CAN.G644.30' => 'can', 'CAN.G84.47' => 'can', 'CAN.G919.8' => 'can', 'CANSAT54G0113' => 'cansat', 'CANSAT54G1286' => 'cansat', 'CANSAT64G1020' => 'cansat', 'CARHR008080' => 'chi', 'CARHR008090' => 'chi', 'CARHR012130' => 'chi', 'CARHR038390' => 'chi', 'CARHR082330' => 'chi', 'CARHR120520' => 'chi', 'CARHR151470' => 'chi', 'CARHR190950' => 'chi', 'Carub.0001s0760' => 'cru', 'Carub.0001s1146' => 'cru', 'Carub.0003s0721' => 'cru', 'Carub.0004s0858' => 'cru', 'Carub.0005s1040' => 'cru', 'Carub.0006s2035' => 'cru', 'Carub.0015s0005' => 'cru', 'Ca_01607_v3' => 'car', 'Ca_01677_v3' => 'car', 'Ca_06087_v3' => 'car', 'Ca_19238_v3' => 'car', 'Ca_19373_v3' => 'car', 'Ca_21079_v3' => 'car', 'CBR_g54016' => 'cbr', 'CBR_g54018' => 'cbr', 'CBR_g54020' => 'cbr', 'Cc01_g09780' => 'ccan', 'Cc01_g11680' => 'ccan', 'Cc02_g15610' => 'ccan', 'Cc05_g04350' => 'ccan', 'Cc09_g01580' => 'ccan', 'CDE01G0795' => 'cde', 'CDE02G2024' => 'cde', 'CDE02G2260' => 'cde', 'CDE02G4561' => 'cde', 'CDE05G2733' => 'cde', 'CDE05G3422' => 'cde', 'CDE06G2003' => 'cde', 'CDE08G0576' => 'cde', 'CDE09G0048' => 'cde', 'CDE11G0805' => 'cde', 'Cfa003644' => 'cfa', 'Cfa006290' => 'cfa', 'Cfa010080' => 'cfa', 'Cfa011376' => 'cfa', 'Cfa011576' => 'cfa', 'Cfa011577' => 'cfa', 'Cfa014389' => 'cfa', 'Ciclev10006044m.g' => 'ccl', 'Ciclev10006954m.g' => 'ccl', 'Ciclev10015131m.g' => 'ccl', 'Ciclev10015580m.g' => 'ccl', 'Ciclev10028359m.g' => 'ccl', 'Ciclev10028573m.g' => 'ccl', 'CiPaw.03G159300' => 'cil', 'CiPaw.04G115100' => 'cil', 'CiPaw.09G092800' => 'cil', 'CiPaw.10G071800' => 'cil', 'CiPaw.13G105800' => 'cil', 'CiPaw.13G141000' => 'cil', 'CiPaw.14G103400' => 'cil', 'ClCG01G012700' => 'cla', 'ClCG01G012720' => 'cla', 'ClCG01G021920' => 'cla', 'ClCG02G008870' => 'cla', 'ClCG02G020840' => 'cla', 'ClCG02G021930' => 'cla', 'COL.COLO4_19302' => 'col', 'COL.COLO4_25262' => 'col', 'COL.COLO4_31788' => 'col', 'Cpa.g.c34684' => 'cpa', 'Cpa.g.c36520.1' => 'cpa', 'Cpa.g.c45626' => 'cpa', 'Cpa.g.sc121.17' => 'cpa', 'Cpa.g.sc13.22' => 'cpa', 'Cpa.g.sc87.88' => 'cpa', 'Cre06.g261800' => 'cre', 'CsaV3_1G014500' => 'csa', 'CsaV3_1G014510' => 'csa', 'CsaV3_2G034880' => 'csa', 'CsaV3_6G014760' => 'csa', 'CsaV3_6G021500' => 'csa', 'CsaV3_6G048980' => 'csa', 'CSS0002511' => 'camsi', 'CSS0007556' => 'camsi', 'CSS0008532' => 'camsi', 'CSS0009709' => 'camsi', 'CSS0010486' => 'camsi', 'CSS0016768' => 'camsi', 'CSS0023512' => 'camsi', 'CSS0025341' => 'camsi', 'CSS0027999' => 'camsi', 'CSS0028944' => 'camsi', 'CSS0032292' => 'camsi', 'CSS0032464' => 'camsi', 'CSS0037153' => 'camsi', 'CSS0039256' => 'camsi', 'CSS0048392' => 'camsi', 'CSS0050458' => 'camsi', 'DCAR_004224' => 'dca', 'DCAR_006147' => 'dca', 'DCAR_006465' => 'dca', 'DCAR_008159' => 'dca', 'DCAR_012164' => 'dca', 'DCAR_019764' => 'dca', 'Dinv05418' => 'din', 'Dinv10839' => 'din', 'Dinv12521' => 'din', 'Dinv13900' => 'din', 'Dinv29426' => 'din', 'Duzib150G0263' => 'dzi', 'Duzib168G1178' => 'dzi', 'Duzib168G1924' => 'dzi', 'Duzib170G0299' => 'dzi', 'Duzib170G0813' => 'dzi', 'Duzib235G1128' => 'dzi', 'Duzib248G1060' => 'dzi', 'ECA232G1910' => 'eca', 'ECA233G4621' => 'eca', 'ECA238G1216' => 'eca', 'ECA238G1784' => 'eca', 'ECA248G1242' => 'eca', 'EL10Ac8g20071' => 'bvu', 'EL10Ac9g21086' => 'bvu', 'EL10Ac9g22407' => 'bvu', 'EL10Ac9g22412' => 'bvu', 'Eucgr.A01119' => 'egr', 'Eucgr.E04043' => 'egr', 'Eucgr.J00428' => 'egr', 'Eucgr.J00958' => 'egr', 'FAN11G3091' => 'fan', 'FAN11G3651' => 'fan', 'FAN16G2566' => 'fan', 'FAN21G3155' => 'fan', 'FAN21G3400' => 'fan', 'FAN21G3543' => 'fan', 'FAN25G0234' => 'fan', 'FAN25G1422' => 'fan', 'FAN25G3392' => 'fan', 'FvH4_3g01940' => 'fve', 'FvH4_3g29870' => 'fve', 'FvH4_3g33680' => 'fve', 'Glyma.09G004200' => 'gma', 'Glyma.11G151288' => 'gma', 'Glyma.11G189100' => 'gma', 'Glyma.12G072500' => 'gma', 'Glyma.12G085500' => 'gma', 'Glyma.12G181800' => 'gma', 'Glyma.12G193000' => 'gma', 'Glyma.13G309300' => 'gma', 'Glyma.13G319000' => 'gma', 'Glyma.17G012600' => 'gma', 'Gohir.A06G148600' => 'ghi', 'Gohir.A07G115800' => 'ghi', 'Gohir.A08G003600' => 'ghi', 'Gohir.A09G093300' => 'ghi', 'Gohir.A09G105400' => 'ghi', 'Gohir.A09G105500' => 'ghi', 'Gohir.D06G154600' => 'ghi', 'Gohir.D07G120200' => 'ghi', 'Gohir.D08G013900' => 'ghi', 'Gohir.D09G093100' => 'ghi', 'Gohir.D09G102200' => 'ghi', 'Gohir.D09G102300' => 'ghi', 'Gorai.001G129400' => 'gra', 'Gorai.004G008200' => 'gra', 'Gorai.006G109800' => 'gra', 'Gorai.006G119500' => 'gra', 'Gorai.006G121300' => 'gra', 'Gorai.010G180700' => 'gra', 'GSVIVG01012716001' => 'vvi', 'GSVIVG01025118001' => 'vvi', 'GSVIVG01030439001' => 'vvi', 'GSVIVG01031397001' => 'vvi', 'HanXRQChr01g0004201' => 'han', 'HanXRQChr02g0054941' => 'han', 'HanXRQChr05g0141811' => 'han', 'HanXRQChr07g0197751' => 'han', 'HanXRQChr11g0346691' => 'han', 'HanXRQChr13g0396971' => 'han', 'HanXRQChr14g0432951' => 'han', 'HanXRQChr14g0452001' => 'han', 'HanXRQChr15g0496681' => 'han', 'HanXRQChr17g0557491' => 'han', 'HanXRQChr17g0557501' => 'han', 'Haze_06809' => 'cav', 'Haze_12852' => 'cav', 'Haze_15850' => 'cav', 'Haze_23446' => 'cav', 'Haze_23942' => 'cav', 'Haze_23943' => 'cav', 'Hma1.2p1_0091F.1_g046450' => 'hma', 'Hma1.2p1_0128F.1_g059910' => 'hma', 'Hma1.2p1_0249F.1_g102260' => 'hma', 'Hma1.2p1_0453F.1_g156190' => 'hma', 'Hma1.2p1_0695F.1_g204380' => 'hma', 'Hma1.2p1_0749F.1_g212650' => 'hma', 'Hma1.2p1_2156F.1_g315420' => 'hma', 'Hma1.2p1_2686F.1_g326940' => 'hma', 'HPP92_006428' => 'vpl', 'HPP92_012069' => 'vpl', 'HPP92_014129' => 'vpl', 'HPP92_014133' => 'vpl', 'HPP92_017315' => 'vpl', 'HPP92_026445' => 'vpl', 'HPP92_026446' => 'vpl', 'Hund00774' => 'sun', 'Hund07682' => 'sun', 'Hund21413' => 'sun', 'Hund23462' => 'sun', 'Hund23463' => 'sun', 'Lalb_Chr03g0027911' => 'lal', 'Lalb_Chr13g0304271' => 'lal', 'Lalb_Chr19g0137471' => 'lal', 'Lalb_Chr22g0350651' => 'lal', 'Lalb_Chr24g0395151' => 'lal', 'Lj1A1231T40' => 'lonja', 'Lj1A221T48' => 'lonja', 'Lj1C924T12' => 'lonja', 'Lj2C993G6' => 'lonja', 'Lj3g0005790' => 'lja', 'Lj3g0015432' => 'lja', 'Lj3g0017722' => 'lja', 'Lj3g0018497' => 'lja', 'Lj4g0025071' => 'lja', 'Lsat_1_v5_gn_1_129680' => 'lsa', 'Lsat_1_v5_gn_2_25321' => 'lsa', 'Lsat_1_v5_gn_2_95461' => 'lsa', 'Lsat_1_v5_gn_4_159620' => 'lsa', 'Lsat_1_v5_gn_6_41301' => 'lsa', 'Lsat_1_v5_gn_6_74660' => 'lsa', 'Lsat_1_v5_gn_7_11520' => 'lsa', 'Lsat_1_v5_gn_9_67680' => 'lsa', 'Manes.04G008300' => 'mes', 'Manes.04G008400' => 'mes', 'Manes.04G026500' => 'mes', 'Manes.10G135300' => 'mes', 'Manes.11G157300' => 'mes', 'Manes.12G074000' => 'mes', 'Manes.16G006200' => 'mes', 'Manes.17G026400' => 'mes', 'Mapoly0024s0086' => 'mpo', 'Mapoly0024s0087' => 'mpo', 'Mapoly0071s0057' => 'mpo', 'Mapoly0204s0012' => 'mpo', 'MBI04_g37681_MAGBIO' => 'mbi', 'MBI05_g17779_MAGBIO' => 'mbi', 'MBI12_g31184_MAGBIO' => 'mbi', 'MBI17_g11083_MAGBIO' => 'mbi', 'MBI18_g03883_MAGBIO' => 'mbi', 'MBI18_g28940_MAGBIO' => 'mbi', 'MCO01G690' => 'mco', 'MD03G1109900' => 'mdo', 'MD03G1134800' => 'mdo', 'MD05G1348000' => 'mdo', 'MD10G1322400' => 'mdo', 'MD11G1123300' => 'mdo', 'MD11G1157600' => 'mdo', 'Medtr2g084875' => 'mtr', 'Medtr2g088130' => 'mtr', 'Medtr4g055310' => 'mtr', 'Medtr4g061070' => 'mtr', 'Medtr4g132250' => 'mtr', 'MELO3C004795.2' => 'cme', 'MELO3C004797.2' => 'cme', 'MELO3C007396.2' => 'cme', 'MELO3C019277.2' => 'cme', 'MELO3C021449.2' => 'cme', 'MELO3C025736.2' => 'cme', 'Migut.D02175' => 'egut', 'Migut.H01573' => 'egut', 'Migut.M01327' => 'egut', 'Migut.N02513' => 'egut', 'MSTRG.14638' => 'ama', 'MSTRG.18632' => 'ama', 'MSTRG.7203' => 'ama', 'Nitab4.5_0000533g0140' => 'nta', 'Nitab4.5_0000888g0150' => 'nta', 'Nitab4.5_0001453g0040' => 'nta', 'Nitab4.5_0002827g0090' => 'nta', 'Nitab4.5_0003082g0040' => 'nta', 'Nitab4.5_0007799g0040' => 'nta', 'Nitab4.5_0008983g0010' => 'nta', 'Nitab4.5_0009017g0020' => 'nta', 'Nn1g02132' => 'nnu', 'Nn1g03492' => 'nnu', 'Nn1g03493' => 'nnu', 'Nn1g03494' => 'nnu', 'Nn1g07164' => 'nnu', 'Nn1g07291' => 'nnu', 'Nn2g10655' => 'nnu', 'Nn2g11652' => 'nnu', 'Nn2g14008' => 'nnu', 'Nn3g17476' => 'nnu', 'Nn3g17477' => 'nnu', 'Nn4g22370' => 'nnu', 'Nn4g25255' => 'nnu', 'Nn5g27755' => 'nnu', 'Nn6g34260' => 'nnu', 'Nn6g35041' => 'nnu', 'Oeu005924.1' => 'oeu', 'Oeu008383.1' => 'oeu', 'Oeu014928.1' => 'oeu', 'Oeu019889.1' => 'oeu', 'Oeu022271.1' => 'oeu', 'Oeu025271.1' => 'oeu', 'Oeu036302.1' => 'oeu', 'Oeu044100.1' => 'oeu', 'Os01g0528300' => 'osa', 'Os03g0286200' => 'osa', 'Os04g0406600' => 'osa', 'Os07g0512000' => 'osa', 'Os07g0694600' => 'osa', 'Os08g0411000' => 'osa', 'Os09g0565700' => 'osa', 'Os09g0566050' => 'osa', 'Os10g0523700' => 'osa', 'Peaxi162Scf00002g00514' => 'pax', 'Peaxi162Scf00047g01817' => 'pax', 'Peaxi162Scf00114g00001' => 'pax', 'Peaxi162Scf00147g00613' => 'pax', 'Peaxi162Scf00389g00425' => 'pax', 'PGR042G1139' => 'pgr', 'PGR042G3273' => 'pgr', 'PGR102G2180' => 'pgr', 'PGR119G0234' => 'pgr', 'PGR119G0668' => 'pgr', 'PGSC0003DMG400007122' => 'stu', 'PGSC0003DMG400016478' => 'stu', 'PGSC0003DMG400025374' => 'stu', 'PGSC0003DMG400026536' => 'stu', 'Phvul.003G079600' => 'pvu', 'Phvul.005G115600' => 'pvu', 'Phvul.005G127100' => 'pvu', 'Phvul.006G149500' => 'pvu', 'Phvul.006G149600' => 'pvu', 'Phvul.011G071800' => 'pvu', 'Phvul.011G090400' => 'pvu', 'Potri.004G013400' => 'ptr', 'Potri.004G188100' => 'ptr', 'Potri.008G195500' => 'ptr', 'Potri.009G148800' => 'ptr', 'Potri.011G004700' => 'ptr', 'Pp3c17_22810' => 'ppa', 'Pp3c18_4480' => 'ppa', 'Pp3c19_13030' => 'ppa', 'Pp3c1_33620' => 'ppa', 'Pp3c2_9380' => 'ppa', 'PRCOL_00001023' => 'pco', 'Prupe.3G216300' => 'ppe', 'Prupe.4G019500' => 'ppe', 'Prupe.6G092500' => 'ppe', 'Prupe.6G119200' => 'ppe', 'Psat0s1945g0080' => 'psa', 'Psat0s4167g0040' => 'psa', 'Psat1g185800' => 'psa', 'Psat4g006440' => 'psa', 'Psat4g006480' => 'psa', 'Psat4g168120' => 'psa', 'Psat5g255680' => 'psa', 'Psat5g261760' => 'psa', 'Psat7g222120' => 'psa', 'PSO063G7252' => 'pso', 'PSO170G4778' => 'pso', 'PSO210G2249' => 'pso', 'PSO339G2411' => 'pso', 'PSO339G2457' => 'pso', 'PSO339G2854' => 'pso', 'PSO339G4288' => 'pso', 'PSO339G4615' => 'pso', 'PSO384G2796' => 'pso', 'PSO384G2940' => 'pso', 'PSO384G4227' => 'pso', 'PSO478G1425' => 'pso', 'PSO541G3863' => 'pso', 'PSO675G0507' => 'pso', 'PSO782G0338' => 'pso', 'PSO832G0644' => 'pso', 'QL01p013664' => 'qlo', 'QL01p036598' => 'qlo', 'QL05p072984' => 'qlo', 'QL08p005768' => 'qlo', 'QL08p032743' => 'qlo', 'QL93p0073_0439' => 'qlo', 'QL93p0073_0444' => 'qlo', 'RcHm_v2.0_Chr5g0002851' => 'rch', 'RcHm_v2.0_Chr5g0055201' => 'rch', 'RcHm_v2.0_Chr5g0061191' => 'rch', 'RcHm_v2.0_Chr7g0203231' => 'rch', 'Rhsim01G0208100' => 'rsi', 'Rhsim01G0208200' => 'rsi', 'Rhsim02G0106500' => 'rsi', 'Rhsim03G0107900' => 'rsi', 'Rhsim06G0163400' => 'rsi', 'Rhsim13G0105200' => 'rsi', 'Sabra04G0006300' => 'sbr', 'Sabra04G0127000' => 'sbr', 'Sabra08G0148700' => 'sbr', 'Sabra09G0117400' => 'sbr', 'SalBow1G3326' => 'sbo', 'SalBow3G3228' => 'sbo', 'SalBow6G1634' => 'sbo', 'SalBow6G3603' => 'sbo', 'SalBow6G5266' => 'sbo', 'SalBow7G2265' => 'sbo', 'SalBow8G0850' => 'sbo', 'SalBow8G2592' => 'sbo', 'Sc05g0009240' => 'sci', 'Sc12g0002300' => 'sci', 'Sc21g0000100' => 'sci', 'Sc21g0004720' => 'sci', 'Sed0002949' => 'sed', 'Sed0004114' => 'sed', 'Sed0004306' => 'sed', 'Sed0006172' => 'sed', 'Sed0008413' => 'sed', 'Sed0013809' => 'sed', 'Sed0019556' => 'sed', 'SEGI_03570' => 'sgi', 'SEGI_07859' => 'sgi', 'SEGI_15042' => 'sgi', 'SEGI_16263' => 'sgi', 'SEGI_16552' => 'sgi', 'SEGI_24331' => 'sgi', 'SEGI_27316' => 'sgi', 'SEGI_29521' => 'sgi', 'SEGI_41342' => 'sgi', 'SGA_v2.0_scaffold27G11617' => 'sas', 'SGA_v2.0_scaffold316G48428' => 'sas', 'SGA_v2.0_scaffold49G18261' => 'sas', 'SGA_v2.0_scaffold7G03831' => 'sas', 'SGA_v2.0_scaffold93G28359' => 'sas', 'SHI02210' => 'shi', 'SHI06028' => 'shi', 'SHI06321' => 'shi', 'SMO111G0012' => 'smo', 'SMO228G0080' => 'smo', 'SMO356G0756' => 'smo', 'Solyc02g080620.3' => 'sly', 'Solyc06g074530.1' => 'sly', 'Solyc11g066890.1' => 'sly', 'Solyc11g072520.3' => 'sly', 'Sopen02g025330' => 'spe', 'Sopen06g031000' => 'spe', 'Sopen09g008240' => 'spe', 'Sopen09g025210' => 'spe', 'Sopen11g026600' => 'spe', 'Sopen11g030170' => 'spe', 'Sp1g10420' => 'spa', 'Sp3g06570' => 'spa', 'Sp4g10660' => 'spa', 'Sp5g16460' => 'spa', 'Sp6g22710' => 'spa', 'TAR365G0112' => 'tar', 'TAR369G0717' => 'tar', 'TAR374G0976' => 'tar', 'TAR623G1128' => 'tar', 'TAR626G1937' => 'tar', 'TAR627G0123' => 'tar', 'TAR628G0305' => 'tar', 'TAR636G1176' => 'tar', 'TAR636G2442' => 'tar', 'THA.LOC104800556' => 'tha', 'THA.LOC104809501' => 'tha', 'THA.LOC104815126' => 'tha', 'THA.LOC104815732' => 'tha', 'THA.LOC104823528' => 'tha', 'Thecc.02G365600' => 'tca', 'Thecc.06G222300' => 'tca', 'Thecc.09G261800' => 'tca', 'Thecc.09G291400' => 'tca', 'Thhalv10003028m.g' => 'esa', 'Thhalv10007886m.g' => 'esa', 'Thhalv10016085m.g' => 'esa', 'Thhalv10016681m.g' => 'esa', 'Thhalv10020951m.g' => 'esa', 'TPR.G15598' => 'tpr', 'TPR.G29305' => 'tpr', 'TPR.G32395' => 'tpr', 'TPR.G36998' => 'tpr', 'TPR.G4227' => 'tpr', 'TWI18G1433' => 'twi', 'TWI31G0755' => 'twi', 'TWI38G0912' => 'twi', 'TWI75G1097' => 'twi', 'TWI75G1619' => 'twi', 'TWI79G1336' => 'twi', 'unitig_0.g943' => 'ugi', 'unitig_0.g944' => 'ugi', 'unitig_22.g6646' => 'ugi', 'unitig_37.g12681' => 'ugi', 'unitig_8.g3290' => 'ugi', 'vmacro03278' => 'vma', 'vmacro12197' => 'vma', 'vmacro14478' => 'vma', 'vmacro15787' => 'vma', 'vmacro15789' => 'vma', 'vmacro15790' => 'vma', 'vmacro15806' => 'vma', 'vmacro22907' => 'vma', 'vmacro22908' => 'vma', 'vmacro22909' => 'vma', 'vmacro23108' => 'vma', 'VMungo0540G0540' => 'vmu', 'VMungo0540G2468' => 'vmu', 'VMungo1080G0390' => 'vmu', 'VMungo1080G1165' => 'vmu', 'VMungo1127G0170' => 'vmu', 'VMungo1127G2099' => 'vmu', 'VMungo1215G3013' => 'vmu', 'Zm00001eb013110' => 'zma', 'Zm00001eb084260' => 'zma', 'Zm00001eb096110' => 'zma', 'Zm00001eb217510' => 'zma', 'Zm00001eb322550' => 'zma', 'Zm00001eb390770' => 'zma', 'Zm00001eb397170' => 'zma', 'Zm00001eb404610' => 'zma', 'Zm00001eb421790' => 'zma' ) $gf_id = 'HOM05D000911' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000911' ) $data_identifier = 'HOM05D000911' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 16, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 5, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 6, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 8, 'nnu' => (int) 16, 'oeu' => (int) 8, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 5, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 16, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421790' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000911', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27780' => 'bna', 'A03p35380' => 'bna', 'A04p21160' => 'bna', 'A05p40570' => 'bna', 'A06p26900' => 'bna', 'A08p33230' => 'bna', 'A09p65960' => 'bna', 'A10p18290' => 'bna', 'Aa31LG1G12990' => 'aar', 'Aa31LG1G2980' => 'aar', 'Aa31LG4G14320' => 'aar', 'Aa31LG7G11800' => 'aar', 'Aa31sc36G50' => 'aar', 'Aa31sc36G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3721' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5459' => 'aag', 'Actinidia03028' => 'ach', 'Actinidia03753' => 'ach', 'Actinidia04187' => 'ach', 'Actinidia05509' => 'ach', 'Actinidia24180' => 'ach', 'Actinidia26906' => 'ach', 'Actinidia37097' => 'ach', 'Actinidia38249' => 'ach', 'Ah.01g003470' => 'amhyb', 'Ah.01g004580' => 'amhyb', 'Ah.01g014850' => 'amhyb', 'Ah.01g016830' => 'amhyb', 'Ah.14g088000' => 'amhyb', 'AL1G22980' => 'aly', 'AL3G18990' => 'aly', 'AL4G22440' => 'aly', 'AL4G33180' => 'aly', 'AL5G22920' => 'aly', 'AL6G33660' => 'aly', 'AL8G20720' => 'aly', 'Aqoxy1G00935' => 'aox', 'Aqoxy1G02094' => 'aox', 'Aqoxy2G01239' => 'aox', 'Aqoxy4G01870' => 'aox', 'Aqoxy7G00450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.36ZVTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71EM27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5D6C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH3WRE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3NCM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RIM768' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YB5YRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z36GDV' => 'arhy', 'AT1G08250' => 'ath', 'AT1G11790' => 'ath', 'AT2G27820' => 'ath', 'AT3G07630' => 'ath', 'AT3G44720' => 'ath', 'AT5G22630' => 'ath', 'ATR0693G304' => 'atr', 'ATR0794G109' => 'atr', 'ATR0820G120' => 'atr', 'ATR1159G064' => 'atr', 'Atru.chr10.2239' => 'acertr', 'Atru.chr3.3371' => 'acertr', 'Atru.chr6.3202' => 'acertr', 'AUR62006499' => 'cqu', 'AUR62012718' => 'cqu', 'AUR62021938' => 'cqu', 'AUR62023932' => 'cqu', 'AUR62025034' => 'cqu', 'AUR62025035' => 'cqu', 'AUR62038307' => 'cqu', 'AUR62043466' => 'cqu', 'BcaB02g10748' => 'bca', 'BcaB03g13231' => 'bca', 'BcaB03g14689' => 'bca', 'BcaB05g22716' => 'bca', 'BcaB06g28172' => 'bca', 'BcaB08g36413' => 'bca', 'BcaC01g02186' => 'bca', 'BcaC01g04272' => 'bca', 'BcaC02g08080' => 'bca', 'BcaC02g08227' => 'bca', 'BcaC03g13901' => 'bca', 'BcaC04g19593' => 'bca', 'BcaC04g20874' => 'bca', 'BcaC05g29557' => 'bca', 'BcaC06g35505' => 'bca', 'BcaC07g41954' => 'bca', 'BcaC07g41955' => 'bca', 'BcaC07g41956' => 'bca', 'BcaC07g42519' => 'bca', 'BcaC07g42520' => 'bca', 'BcaC07g42523' => 'bca', 'BcaC07g42524' => 'bca', 'BcaC07g42525' => 'bca', 'BcaC08g47480' => 'bca', 'BcaC08g47481' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00530' => 'bna', 'BolC2t07178H' => 'bol', 'BolC3t16567H' => 'bol', 'BolC4t27234H' => 'bol', 'BolC5t29728H' => 'bol', 'BolC5t34622H' => 'bol', 'BolC6t40321H' => 'bol', 'BolC7t42028H' => 'bol', 'BolC8t49125H' => 'bol', 'BolC8t52538H' => 'bol', 'BolC8t52539H' => 'bol', 'BolC9t56681H' => 'bol', 'BolC9t58266H' => 'bol', 'BolSC21t60294H' => 'bol', 'BraA02t05670Z' => 'bra', 'BraA03t12716Z' => 'bra', 'BraA04t17685Z' => 'bra', 'BraA05t22788Z' => 'bra', 'BraA06t24032Z' => 'bra', 'BraA06t25625Z' => 'bra', 'BraA07t27930Z' => 'bra', 'BraA08t35242Z' => 'bra', 'BraA09t38609Z' => 'bra', 'BraA10t43905Z' => 'bra', 'C02p11060' => 'bna', 'C03p42990' => 'bna', 'C03p67310' => 'bna', 'C04p56990' => 'bna', 'C04p58660' => 'bna', 'C05p09890' => 'bna', 'C05p59680' => 'bna', 'C06p19830' => 'bna', 'C06p53040' => 'bna', 'C07p15230' => 'bna', 'C08p50070' => 'bna', 'C08p50090' => 'bna', 'C09p38330' => 'bna', 'C09p53940' => 'bna', 'CAN.G1014.1' => 'can', 'CAN.G644.30' => 'can', 'CAN.G84.47' => 'can', 'CAN.G919.8' => 'can', 'CANSAT54G0113' => 'cansat', 'CANSAT54G1286' => 'cansat', 'CANSAT64G1020' => 'cansat', 'CARHR008080' => 'chi', 'CARHR008090' => 'chi', 'CARHR012130' => 'chi', 'CARHR038390' => 'chi', 'CARHR082330' => 'chi', 'CARHR120520' => 'chi', 'CARHR151470' => 'chi', 'CARHR190950' => 'chi', 'Carub.0001s0760' => 'cru', 'Carub.0001s1146' => 'cru', 'Carub.0003s0721' => 'cru', 'Carub.0004s0858' => 'cru', 'Carub.0005s1040' => 'cru', 'Carub.0006s2035' => 'cru', 'Carub.0015s0005' => 'cru', 'Ca_01607_v3' => 'car', 'Ca_01677_v3' => 'car', 'Ca_06087_v3' => 'car', 'Ca_19238_v3' => 'car', 'Ca_19373_v3' => 'car', 'Ca_21079_v3' => 'car', 'CBR_g54016' => 'cbr', 'CBR_g54018' => 'cbr', 'CBR_g54020' => 'cbr', 'Cc01_g09780' => 'ccan', 'Cc01_g11680' => 'ccan', 'Cc02_g15610' => 'ccan', 'Cc05_g04350' => 'ccan', 'Cc09_g01580' => 'ccan', 'CDE01G0795' => 'cde', 'CDE02G2024' => 'cde', 'CDE02G2260' => 'cde', 'CDE02G4561' => 'cde', 'CDE05G2733' => 'cde', 'CDE05G3422' => 'cde', 'CDE06G2003' => 'cde', 'CDE08G0576' => 'cde', 'CDE09G0048' => 'cde', 'CDE11G0805' => 'cde', 'Cfa003644' => 'cfa', 'Cfa006290' => 'cfa', 'Cfa010080' => 'cfa', 'Cfa011376' => 'cfa', 'Cfa011576' => 'cfa', 'Cfa011577' => 'cfa', 'Cfa014389' => 'cfa', 'Ciclev10006044m.g' => 'ccl', 'Ciclev10006954m.g' => 'ccl', 'Ciclev10015131m.g' => 'ccl', 'Ciclev10015580m.g' => 'ccl', 'Ciclev10028359m.g' => 'ccl', 'Ciclev10028573m.g' => 'ccl', 'CiPaw.03G159300' => 'cil', 'CiPaw.04G115100' => 'cil', 'CiPaw.09G092800' => 'cil', 'CiPaw.10G071800' => 'cil', 'CiPaw.13G105800' => 'cil', 'CiPaw.13G141000' => 'cil', 'CiPaw.14G103400' => 'cil', 'ClCG01G012700' => 'cla', 'ClCG01G012720' => 'cla', 'ClCG01G021920' => 'cla', 'ClCG02G008870' => 'cla', 'ClCG02G020840' => 'cla', 'ClCG02G021930' => 'cla', 'COL.COLO4_19302' => 'col', 'COL.COLO4_25262' => 'col', 'COL.COLO4_31788' => 'col', 'Cpa.g.c34684' => 'cpa', 'Cpa.g.c36520.1' => 'cpa', 'Cpa.g.c45626' => 'cpa', 'Cpa.g.sc121.17' => 'cpa', 'Cpa.g.sc13.22' => 'cpa', 'Cpa.g.sc87.88' => 'cpa', 'Cre06.g261800' => 'cre', 'CsaV3_1G014500' => 'csa', 'CsaV3_1G014510' => 'csa', 'CsaV3_2G034880' => 'csa', 'CsaV3_6G014760' => 'csa', 'CsaV3_6G021500' => 'csa', 'CsaV3_6G048980' => 'csa', 'CSS0002511' => 'camsi', 'CSS0007556' => 'camsi', 'CSS0008532' => 'camsi', 'CSS0009709' => 'camsi', 'CSS0010486' => 'camsi', 'CSS0016768' => 'camsi', 'CSS0023512' => 'camsi', 'CSS0025341' => 'camsi', 'CSS0027999' => 'camsi', 'CSS0028944' => 'camsi', 'CSS0032292' => 'camsi', 'CSS0032464' => 'camsi', 'CSS0037153' => 'camsi', 'CSS0039256' => 'camsi', 'CSS0048392' => 'camsi', 'CSS0050458' => 'camsi', 'DCAR_004224' => 'dca', 'DCAR_006147' => 'dca', 'DCAR_006465' => 'dca', 'DCAR_008159' => 'dca', 'DCAR_012164' => 'dca', 'DCAR_019764' => 'dca', 'Dinv05418' => 'din', 'Dinv10839' => 'din', 'Dinv12521' => 'din', 'Dinv13900' => 'din', 'Dinv29426' => 'din', 'Duzib150G0263' => 'dzi', 'Duzib168G1178' => 'dzi', 'Duzib168G1924' => 'dzi', 'Duzib170G0299' => 'dzi', 'Duzib170G0813' => 'dzi', 'Duzib235G1128' => 'dzi', 'Duzib248G1060' => 'dzi', 'ECA232G1910' => 'eca', 'ECA233G4621' => 'eca', 'ECA238G1216' => 'eca', 'ECA238G1784' => 'eca', 'ECA248G1242' => 'eca', 'EL10Ac8g20071' => 'bvu', 'EL10Ac9g21086' => 'bvu', 'EL10Ac9g22407' => 'bvu', 'EL10Ac9g22412' => 'bvu', 'Eucgr.A01119' => 'egr', 'Eucgr.E04043' => 'egr', 'Eucgr.J00428' => 'egr', 'Eucgr.J00958' => 'egr', 'FAN11G3091' => 'fan', 'FAN11G3651' => 'fan', 'FAN16G2566' => 'fan', 'FAN21G3155' => 'fan', 'FAN21G3400' => 'fan', 'FAN21G3543' => 'fan', 'FAN25G0234' => 'fan', 'FAN25G1422' => 'fan', 'FAN25G3392' => 'fan', 'FvH4_3g01940' => 'fve', 'FvH4_3g29870' => 'fve', 'FvH4_3g33680' => 'fve', 'Glyma.09G004200' => 'gma', 'Glyma.11G151288' => 'gma', 'Glyma.11G189100' => 'gma', 'Glyma.12G072500' => 'gma', 'Glyma.12G085500' => 'gma', 'Glyma.12G181800' => 'gma', 'Glyma.12G193000' => 'gma', 'Glyma.13G309300' => 'gma', 'Glyma.13G319000' => 'gma', 'Glyma.17G012600' => 'gma', 'Gohir.A06G148600' => 'ghi', 'Gohir.A07G115800' => 'ghi', 'Gohir.A08G003600' => 'ghi', 'Gohir.A09G093300' => 'ghi', 'Gohir.A09G105400' => 'ghi', 'Gohir.A09G105500' => 'ghi', 'Gohir.D06G154600' => 'ghi', 'Gohir.D07G120200' => 'ghi', 'Gohir.D08G013900' => 'ghi', 'Gohir.D09G093100' => 'ghi', 'Gohir.D09G102200' => 'ghi', 'Gohir.D09G102300' => 'ghi', 'Gorai.001G129400' => 'gra', 'Gorai.004G008200' => 'gra', 'Gorai.006G109800' => 'gra', 'Gorai.006G119500' => 'gra', 'Gorai.006G121300' => 'gra', 'Gorai.010G180700' => 'gra', 'GSVIVG01012716001' => 'vvi', 'GSVIVG01025118001' => 'vvi', 'GSVIVG01030439001' => 'vvi', 'GSVIVG01031397001' => 'vvi', 'HanXRQChr01g0004201' => 'han', 'HanXRQChr02g0054941' => 'han', 'HanXRQChr05g0141811' => 'han', 'HanXRQChr07g0197751' => 'han', 'HanXRQChr11g0346691' => 'han', 'HanXRQChr13g0396971' => 'han', 'HanXRQChr14g0432951' => 'han', 'HanXRQChr14g0452001' => 'han', 'HanXRQChr15g0496681' => 'han', 'HanXRQChr17g0557491' => 'han', 'HanXRQChr17g0557501' => 'han', 'Haze_06809' => 'cav', 'Haze_12852' => 'cav', 'Haze_15850' => 'cav', 'Haze_23446' => 'cav', 'Haze_23942' => 'cav', 'Haze_23943' => 'cav', 'Hma1.2p1_0091F.1_g046450' => 'hma', 'Hma1.2p1_0128F.1_g059910' => 'hma', 'Hma1.2p1_0249F.1_g102260' => 'hma', 'Hma1.2p1_0453F.1_g156190' => 'hma', 'Hma1.2p1_0695F.1_g204380' => 'hma', 'Hma1.2p1_0749F.1_g212650' => 'hma', 'Hma1.2p1_2156F.1_g315420' => 'hma', 'Hma1.2p1_2686F.1_g326940' => 'hma', 'HPP92_006428' => 'vpl', 'HPP92_012069' => 'vpl', 'HPP92_014129' => 'vpl', 'HPP92_014133' => 'vpl', 'HPP92_017315' => 'vpl', 'HPP92_026445' => 'vpl', 'HPP92_026446' => 'vpl', 'Hund00774' => 'sun', 'Hund07682' => 'sun', 'Hund21413' => 'sun', 'Hund23462' => 'sun', 'Hund23463' => 'sun', 'Lalb_Chr03g0027911' => 'lal', 'Lalb_Chr13g0304271' => 'lal', 'Lalb_Chr19g0137471' => 'lal', 'Lalb_Chr22g0350651' => 'lal', 'Lalb_Chr24g0395151' => 'lal', 'Lj1A1231T40' => 'lonja', 'Lj1A221T48' => 'lonja', 'Lj1C924T12' => 'lonja', 'Lj2C993G6' => 'lonja', 'Lj3g0005790' => 'lja', 'Lj3g0015432' => 'lja', 'Lj3g0017722' => 'lja', 'Lj3g0018497' => 'lja', 'Lj4g0025071' => 'lja', 'Lsat_1_v5_gn_1_129680' => 'lsa', 'Lsat_1_v5_gn_2_25321' => 'lsa', 'Lsat_1_v5_gn_2_95461' => 'lsa', 'Lsat_1_v5_gn_4_159620' => 'lsa', 'Lsat_1_v5_gn_6_41301' => 'lsa', 'Lsat_1_v5_gn_6_74660' => 'lsa', 'Lsat_1_v5_gn_7_11520' => 'lsa', 'Lsat_1_v5_gn_9_67680' => 'lsa', 'Manes.04G008300' => 'mes', 'Manes.04G008400' => 'mes', 'Manes.04G026500' => 'mes', 'Manes.10G135300' => 'mes', 'Manes.11G157300' => 'mes', 'Manes.12G074000' => 'mes', 'Manes.16G006200' => 'mes', 'Manes.17G026400' => 'mes', 'Mapoly0024s0086' => 'mpo', 'Mapoly0024s0087' => 'mpo', 'Mapoly0071s0057' => 'mpo', 'Mapoly0204s0012' => 'mpo', 'MBI04_g37681_MAGBIO' => 'mbi', 'MBI05_g17779_MAGBIO' => 'mbi', 'MBI12_g31184_MAGBIO' => 'mbi', 'MBI17_g11083_MAGBIO' => 'mbi', 'MBI18_g03883_MAGBIO' => 'mbi', 'MBI18_g28940_MAGBIO' => 'mbi', 'MCO01G690' => 'mco', 'MD03G1109900' => 'mdo', 'MD03G1134800' => 'mdo', 'MD05G1348000' => 'mdo', 'MD10G1322400' => 'mdo', 'MD11G1123300' => 'mdo', 'MD11G1157600' => 'mdo', 'Medtr2g084875' => 'mtr', 'Medtr2g088130' => 'mtr', 'Medtr4g055310' => 'mtr', 'Medtr4g061070' => 'mtr', 'Medtr4g132250' => 'mtr', 'MELO3C004795.2' => 'cme', 'MELO3C004797.2' => 'cme', 'MELO3C007396.2' => 'cme', 'MELO3C019277.2' => 'cme', 'MELO3C021449.2' => 'cme', 'MELO3C025736.2' => 'cme', 'Migut.D02175' => 'egut', 'Migut.H01573' => 'egut', 'Migut.M01327' => 'egut', 'Migut.N02513' => 'egut', 'MSTRG.14638' => 'ama', 'MSTRG.18632' => 'ama', 'MSTRG.7203' => 'ama', 'Nitab4.5_0000533g0140' => 'nta', 'Nitab4.5_0000888g0150' => 'nta', 'Nitab4.5_0001453g0040' => 'nta', 'Nitab4.5_0002827g0090' => 'nta', 'Nitab4.5_0003082g0040' => 'nta', 'Nitab4.5_0007799g0040' => 'nta', 'Nitab4.5_0008983g0010' => 'nta', 'Nitab4.5_0009017g0020' => 'nta', 'Nn1g02132' => 'nnu', 'Nn1g03492' => 'nnu', 'Nn1g03493' => 'nnu', 'Nn1g03494' => 'nnu', 'Nn1g07164' => 'nnu', 'Nn1g07291' => 'nnu', 'Nn2g10655' => 'nnu', 'Nn2g11652' => 'nnu', 'Nn2g14008' => 'nnu', 'Nn3g17476' => 'nnu', 'Nn3g17477' => 'nnu', 'Nn4g22370' => 'nnu', 'Nn4g25255' => 'nnu', 'Nn5g27755' => 'nnu', 'Nn6g34260' => 'nnu', 'Nn6g35041' => 'nnu', 'Oeu005924.1' => 'oeu', 'Oeu008383.1' => 'oeu', 'Oeu014928.1' => 'oeu', 'Oeu019889.1' => 'oeu', 'Oeu022271.1' => 'oeu', 'Oeu025271.1' => 'oeu', 'Oeu036302.1' => 'oeu', 'Oeu044100.1' => 'oeu', 'Os01g0528300' => 'osa', 'Os03g0286200' => 'osa', 'Os04g0406600' => 'osa', 'Os07g0512000' => 'osa', 'Os07g0694600' => 'osa', 'Os08g0411000' => 'osa', 'Os09g0565700' => 'osa', 'Os09g0566050' => 'osa', 'Os10g0523700' => 'osa', 'Peaxi162Scf00002g00514' => 'pax', 'Peaxi162Scf00047g01817' => 'pax', 'Peaxi162Scf00114g00001' => 'pax', 'Peaxi162Scf00147g00613' => 'pax', 'Peaxi162Scf00389g00425' => 'pax', 'PGR042G1139' => 'pgr', 'PGR042G3273' => 'pgr', 'PGR102G2180' => 'pgr', 'PGR119G0234' => 'pgr', 'PGR119G0668' => 'pgr', 'PGSC0003DMG400007122' => 'stu', 'PGSC0003DMG400016478' => 'stu', 'PGSC0003DMG400025374' => 'stu', 'PGSC0003DMG400026536' => 'stu', 'Phvul.003G079600' => 'pvu', 'Phvul.005G115600' => 'pvu', 'Phvul.005G127100' => 'pvu', 'Phvul.006G149500' => 'pvu', 'Phvul.006G149600' => 'pvu', 'Phvul.011G071800' => 'pvu', 'Phvul.011G090400' => 'pvu', 'Potri.004G013400' => 'ptr', 'Potri.004G188100' => 'ptr', 'Potri.008G195500' => 'ptr', 'Potri.009G148800' => 'ptr', 'Potri.011G004700' => 'ptr', 'Pp3c17_22810' => 'ppa', 'Pp3c18_4480' => 'ppa', 'Pp3c19_13030' => 'ppa', 'Pp3c1_33620' => 'ppa', 'Pp3c2_9380' => 'ppa', 'PRCOL_00001023' => 'pco', 'Prupe.3G216300' => 'ppe', 'Prupe.4G019500' => 'ppe', 'Prupe.6G092500' => 'ppe', 'Prupe.6G119200' => 'ppe', 'Psat0s1945g0080' => 'psa', 'Psat0s4167g0040' => 'psa', 'Psat1g185800' => 'psa', 'Psat4g006440' => 'psa', 'Psat4g006480' => 'psa', 'Psat4g168120' => 'psa', 'Psat5g255680' => 'psa', 'Psat5g261760' => 'psa', 'Psat7g222120' => 'psa', 'PSO063G7252' => 'pso', 'PSO170G4778' => 'pso', 'PSO210G2249' => 'pso', 'PSO339G2411' => 'pso', 'PSO339G2457' => 'pso', 'PSO339G2854' => 'pso', 'PSO339G4288' => 'pso', 'PSO339G4615' => 'pso', 'PSO384G2796' => 'pso', 'PSO384G2940' => 'pso', 'PSO384G4227' => 'pso', 'PSO478G1425' => 'pso', 'PSO541G3863' => 'pso', 'PSO675G0507' => 'pso', 'PSO782G0338' => 'pso', 'PSO832G0644' => 'pso', 'QL01p013664' => 'qlo', 'QL01p036598' => 'qlo', 'QL05p072984' => 'qlo', 'QL08p005768' => 'qlo', 'QL08p032743' => 'qlo', 'QL93p0073_0439' => 'qlo', 'QL93p0073_0444' => 'qlo', 'RcHm_v2.0_Chr5g0002851' => 'rch', 'RcHm_v2.0_Chr5g0055201' => 'rch', 'RcHm_v2.0_Chr5g0061191' => 'rch', 'RcHm_v2.0_Chr7g0203231' => 'rch', 'Rhsim01G0208100' => 'rsi', 'Rhsim01G0208200' => 'rsi', 'Rhsim02G0106500' => 'rsi', 'Rhsim03G0107900' => 'rsi', 'Rhsim06G0163400' => 'rsi', 'Rhsim13G0105200' => 'rsi', 'Sabra04G0006300' => 'sbr', 'Sabra04G0127000' => 'sbr', 'Sabra08G0148700' => 'sbr', 'Sabra09G0117400' => 'sbr', 'SalBow1G3326' => 'sbo', 'SalBow3G3228' => 'sbo', 'SalBow6G1634' => 'sbo', 'SalBow6G3603' => 'sbo', 'SalBow6G5266' => 'sbo', 'SalBow7G2265' => 'sbo', 'SalBow8G0850' => 'sbo', 'SalBow8G2592' => 'sbo', 'Sc05g0009240' => 'sci', 'Sc12g0002300' => 'sci', 'Sc21g0000100' => 'sci', 'Sc21g0004720' => 'sci', 'Sed0002949' => 'sed', 'Sed0004114' => 'sed', 'Sed0004306' => 'sed', 'Sed0006172' => 'sed', 'Sed0008413' => 'sed', 'Sed0013809' => 'sed', 'Sed0019556' => 'sed', 'SEGI_03570' => 'sgi', 'SEGI_07859' => 'sgi', 'SEGI_15042' => 'sgi', 'SEGI_16263' => 'sgi', 'SEGI_16552' => 'sgi', 'SEGI_24331' => 'sgi', 'SEGI_27316' => 'sgi', 'SEGI_29521' => 'sgi', 'SEGI_41342' => 'sgi', 'SGA_v2.0_scaffold27G11617' => 'sas', 'SGA_v2.0_scaffold316G48428' => 'sas', 'SGA_v2.0_scaffold49G18261' => 'sas', 'SGA_v2.0_scaffold7G03831' => 'sas', 'SGA_v2.0_scaffold93G28359' => 'sas', 'SHI02210' => 'shi', 'SHI06028' => 'shi', 'SHI06321' => 'shi', 'SMO111G0012' => 'smo', 'SMO228G0080' => 'smo', 'SMO356G0756' => 'smo', 'Solyc02g080620.3' => 'sly', 'Solyc06g074530.1' => 'sly', 'Solyc11g066890.1' => 'sly', 'Solyc11g072520.3' => 'sly', 'Sopen02g025330' => 'spe', 'Sopen06g031000' => 'spe', 'Sopen09g008240' => 'spe', 'Sopen09g025210' => 'spe', 'Sopen11g026600' => 'spe', 'Sopen11g030170' => 'spe', 'Sp1g10420' => 'spa', 'Sp3g06570' => 'spa', 'Sp4g10660' => 'spa', 'Sp5g16460' => 'spa', 'Sp6g22710' => 'spa', 'TAR365G0112' => 'tar', 'TAR369G0717' => 'tar', 'TAR374G0976' => 'tar', 'TAR623G1128' => 'tar', 'TAR626G1937' => 'tar', 'TAR627G0123' => 'tar', 'TAR628G0305' => 'tar', 'TAR636G1176' => 'tar', 'TAR636G2442' => 'tar', 'THA.LOC104800556' => 'tha', 'THA.LOC104809501' => 'tha', 'THA.LOC104815126' => 'tha', 'THA.LOC104815732' => 'tha', 'THA.LOC104823528' => 'tha', 'Thecc.02G365600' => 'tca', 'Thecc.06G222300' => 'tca', 'Thecc.09G261800' => 'tca', 'Thecc.09G291400' => 'tca', 'Thhalv10003028m.g' => 'esa', 'Thhalv10007886m.g' => 'esa', 'Thhalv10016085m.g' => 'esa', 'Thhalv10016681m.g' => 'esa', 'Thhalv10020951m.g' => 'esa', 'TPR.G15598' => 'tpr', 'TPR.G29305' => 'tpr', 'TPR.G32395' => 'tpr', 'TPR.G36998' => 'tpr', 'TPR.G4227' => 'tpr', 'TWI18G1433' => 'twi', 'TWI31G0755' => 'twi', 'TWI38G0912' => 'twi', 'TWI75G1097' => 'twi', 'TWI75G1619' => 'twi', 'TWI79G1336' => 'twi', 'unitig_0.g943' => 'ugi', 'unitig_0.g944' => 'ugi', 'unitig_22.g6646' => 'ugi', 'unitig_37.g12681' => 'ugi', 'unitig_8.g3290' => 'ugi', 'vmacro03278' => 'vma', 'vmacro12197' => 'vma', 'vmacro14478' => 'vma', 'vmacro15787' => 'vma', 'vmacro15789' => 'vma', 'vmacro15790' => 'vma', 'vmacro15806' => 'vma', 'vmacro22907' => 'vma', 'vmacro22908' => 'vma', 'vmacro22909' => 'vma', 'vmacro23108' => 'vma', 'VMungo0540G0540' => 'vmu', 'VMungo0540G2468' => 'vmu', 'VMungo1080G0390' => 'vmu', 'VMungo1080G1165' => 'vmu', 'VMungo1127G0170' => 'vmu', 'VMungo1127G2099' => 'vmu', 'VMungo1215G3013' => 'vmu', 'Zm00001eb013110' => 'zma', 'Zm00001eb084260' => 'zma', 'Zm00001eb096110' => 'zma', 'Zm00001eb217510' => 'zma', 'Zm00001eb322550' => 'zma', 'Zm00001eb390770' => 'zma', 'Zm00001eb397170' => 'zma', 'Zm00001eb404610' => 'zma', 'Zm00001eb421790' => 'zma' ), 'gf_id' => 'HOM05D000911', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000911' ), 'data_identifier' => 'HOM05D000911', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000911', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27780' => 'bna', 'A03p35380' => 'bna', 'A04p21160' => 'bna', 'A05p40570' => 'bna', 'A06p26900' => 'bna', 'A08p33230' => 'bna', 'A09p65960' => 'bna', 'A10p18290' => 'bna', 'Aa31LG1G12990' => 'aar', 'Aa31LG1G2980' => 'aar', 'Aa31LG4G14320' => 'aar', 'Aa31LG7G11800' => 'aar', 'Aa31sc36G50' => 'aar', 'Aa31sc36G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3721' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5459' => 'aag', 'Actinidia03028' => 'ach', 'Actinidia03753' => 'ach', 'Actinidia04187' => 'ach', 'Actinidia05509' => 'ach', 'Actinidia24180' => 'ach', 'Actinidia26906' => 'ach', 'Actinidia37097' => 'ach', 'Actinidia38249' => 'ach', 'Ah.01g003470' => 'amhyb', 'Ah.01g004580' => 'amhyb', 'Ah.01g014850' => 'amhyb', 'Ah.01g016830' => 'amhyb', 'Ah.14g088000' => 'amhyb', 'AL1G22980' => 'aly', 'AL3G18990' => 'aly', 'AL4G22440' => 'aly', 'AL4G33180' => 'aly', 'AL5G22920' => 'aly', 'AL6G33660' => 'aly', 'AL8G20720' => 'aly', 'Aqoxy1G00935' => 'aox', 'Aqoxy1G02094' => 'aox', 'Aqoxy2G01239' => 'aox', 'Aqoxy4G01870' => 'aox', 'Aqoxy7G00450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.36ZVTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71EM27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5D6C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH3WRE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3NCM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RIM768' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YB5YRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z36GDV' => 'arhy', 'AT1G08250' => 'ath', 'AT1G11790' => 'ath', 'AT2G27820' => 'ath', 'AT3G07630' => 'ath', 'AT3G44720' => 'ath', 'AT5G22630' => 'ath', 'ATR0693G304' => 'atr', 'ATR0794G109' => 'atr', 'ATR0820G120' => 'atr', 'ATR1159G064' => 'atr', 'Atru.chr10.2239' => 'acertr', 'Atru.chr3.3371' => 'acertr', 'Atru.chr6.3202' => 'acertr', 'AUR62006499' => 'cqu', 'AUR62012718' => 'cqu', 'AUR62021938' => 'cqu', 'AUR62023932' => 'cqu', 'AUR62025034' => 'cqu', 'AUR62025035' => 'cqu', 'AUR62038307' => 'cqu', 'AUR62043466' => 'cqu', 'BcaB02g10748' => 'bca', 'BcaB03g13231' => 'bca', 'BcaB03g14689' => 'bca', 'BcaB05g22716' => 'bca', 'BcaB06g28172' => 'bca', 'BcaB08g36413' => 'bca', 'BcaC01g02186' => 'bca', 'BcaC01g04272' => 'bca', 'BcaC02g08080' => 'bca', 'BcaC02g08227' => 'bca', 'BcaC03g13901' => 'bca', 'BcaC04g19593' => 'bca', 'BcaC04g20874' => 'bca', 'BcaC05g29557' => 'bca', 'BcaC06g35505' => 'bca', 'BcaC07g41954' => 'bca', 'BcaC07g41955' => 'bca', 'BcaC07g41956' => 'bca', 'BcaC07g42519' => 'bca', 'BcaC07g42520' => 'bca', 'BcaC07g42523' => 'bca', 'BcaC07g42524' => 'bca', 'BcaC07g42525' => 'bca', 'BcaC08g47480' => 'bca', 'BcaC08g47481' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00530' => 'bna', 'BolC2t07178H' => 'bol', 'BolC3t16567H' => 'bol', 'BolC4t27234H' => 'bol', 'BolC5t29728H' => 'bol', 'BolC5t34622H' => 'bol', 'BolC6t40321H' => 'bol', 'BolC7t42028H' => 'bol', 'BolC8t49125H' => 'bol', 'BolC8t52538H' => 'bol', 'BolC8t52539H' => 'bol', 'BolC9t56681H' => 'bol', 'BolC9t58266H' => 'bol', 'BolSC21t60294H' => 'bol', 'BraA02t05670Z' => 'bra', 'BraA03t12716Z' => 'bra', 'BraA04t17685Z' => 'bra', 'BraA05t22788Z' => 'bra', 'BraA06t24032Z' => 'bra', 'BraA06t25625Z' => 'bra', 'BraA07t27930Z' => 'bra', 'BraA08t35242Z' => 'bra', 'BraA09t38609Z' => 'bra', 'BraA10t43905Z' => 'bra', 'C02p11060' => 'bna', 'C03p42990' => 'bna', 'C03p67310' => 'bna', 'C04p56990' => 'bna', 'C04p58660' => 'bna', 'C05p09890' => 'bna', 'C05p59680' => 'bna', 'C06p19830' => 'bna', 'C06p53040' => 'bna', 'C07p15230' => 'bna', 'C08p50070' => 'bna', 'C08p50090' => 'bna', 'C09p38330' => 'bna', 'C09p53940' => 'bna', 'CAN.G1014.1' => 'can', 'CAN.G644.30' => 'can', 'CAN.G84.47' => 'can', 'CAN.G919.8' => 'can', 'CANSAT54G0113' => 'cansat', 'CANSAT54G1286' => 'cansat', 'CANSAT64G1020' => 'cansat', 'CARHR008080' => 'chi', 'CARHR008090' => 'chi', 'CARHR012130' => 'chi', 'CARHR038390' => 'chi', 'CARHR082330' => 'chi', 'CARHR120520' => 'chi', 'CARHR151470' => 'chi', 'CARHR190950' => 'chi', 'Carub.0001s0760' => 'cru', 'Carub.0001s1146' => 'cru', 'Carub.0003s0721' => 'cru', 'Carub.0004s0858' => 'cru', 'Carub.0005s1040' => 'cru', 'Carub.0006s2035' => 'cru', 'Carub.0015s0005' => 'cru', 'Ca_01607_v3' => 'car', 'Ca_01677_v3' => 'car', 'Ca_06087_v3' => 'car', 'Ca_19238_v3' => 'car', 'Ca_19373_v3' => 'car', 'Ca_21079_v3' => 'car', 'CBR_g54016' => 'cbr', 'CBR_g54018' => 'cbr', 'CBR_g54020' => 'cbr', 'Cc01_g09780' => 'ccan', 'Cc01_g11680' => 'ccan', 'Cc02_g15610' => 'ccan', 'Cc05_g04350' => 'ccan', 'Cc09_g01580' => 'ccan', 'CDE01G0795' => 'cde', 'CDE02G2024' => 'cde', 'CDE02G2260' => 'cde', 'CDE02G4561' => 'cde', 'CDE05G2733' => 'cde', 'CDE05G3422' => 'cde', 'CDE06G2003' => 'cde', 'CDE08G0576' => 'cde', 'CDE09G0048' => 'cde', 'CDE11G0805' => 'cde', 'Cfa003644' => 'cfa', 'Cfa006290' => 'cfa', 'Cfa010080' => 'cfa', 'Cfa011376' => 'cfa', 'Cfa011576' => 'cfa', 'Cfa011577' => 'cfa', 'Cfa014389' => 'cfa', 'Ciclev10006044m.g' => 'ccl', 'Ciclev10006954m.g' => 'ccl', 'Ciclev10015131m.g' => 'ccl', 'Ciclev10015580m.g' => 'ccl', 'Ciclev10028359m.g' => 'ccl', 'Ciclev10028573m.g' => 'ccl', 'CiPaw.03G159300' => 'cil', 'CiPaw.04G115100' => 'cil', 'CiPaw.09G092800' => 'cil', 'CiPaw.10G071800' => 'cil', 'CiPaw.13G105800' => 'cil', 'CiPaw.13G141000' => 'cil', 'CiPaw.14G103400' => 'cil', 'ClCG01G012700' => 'cla', 'ClCG01G012720' => 'cla', 'ClCG01G021920' => 'cla', 'ClCG02G008870' => 'cla', 'ClCG02G020840' => 'cla', 'ClCG02G021930' => 'cla', 'COL.COLO4_19302' => 'col', 'COL.COLO4_25262' => 'col', 'COL.COLO4_31788' => 'col', 'Cpa.g.c34684' => 'cpa', 'Cpa.g.c36520.1' => 'cpa', 'Cpa.g.c45626' => 'cpa', 'Cpa.g.sc121.17' => 'cpa', 'Cpa.g.sc13.22' => 'cpa', 'Cpa.g.sc87.88' => 'cpa', 'Cre06.g261800' => 'cre', 'CsaV3_1G014500' => 'csa', 'CsaV3_1G014510' => 'csa', 'CsaV3_2G034880' => 'csa', 'CsaV3_6G014760' => 'csa', 'CsaV3_6G021500' => 'csa', 'CsaV3_6G048980' => 'csa', 'CSS0002511' => 'camsi', 'CSS0007556' => 'camsi', 'CSS0008532' => 'camsi', 'CSS0009709' => 'camsi', 'CSS0010486' => 'camsi', 'CSS0016768' => 'camsi', 'CSS0023512' => 'camsi', 'CSS0025341' => 'camsi', 'CSS0027999' => 'camsi', 'CSS0028944' => 'camsi', 'CSS0032292' => 'camsi', 'CSS0032464' => 'camsi', 'CSS0037153' => 'camsi', 'CSS0039256' => 'camsi', 'CSS0048392' => 'camsi', 'CSS0050458' => 'camsi', 'DCAR_004224' => 'dca', 'DCAR_006147' => 'dca', 'DCAR_006465' => 'dca', 'DCAR_008159' => 'dca', 'DCAR_012164' => 'dca', 'DCAR_019764' => 'dca', 'Dinv05418' => 'din', 'Dinv10839' => 'din', 'Dinv12521' => 'din', 'Dinv13900' => 'din', 'Dinv29426' => 'din', 'Duzib150G0263' => 'dzi', 'Duzib168G1178' => 'dzi', 'Duzib168G1924' => 'dzi', 'Duzib170G0299' => 'dzi', 'Duzib170G0813' => 'dzi', 'Duzib235G1128' => 'dzi', 'Duzib248G1060' => 'dzi', 'ECA232G1910' => 'eca', 'ECA233G4621' => 'eca', 'ECA238G1216' => 'eca', 'ECA238G1784' => 'eca', 'ECA248G1242' => 'eca', 'EL10Ac8g20071' => 'bvu', 'EL10Ac9g21086' => 'bvu', 'EL10Ac9g22407' => 'bvu', 'EL10Ac9g22412' => 'bvu', 'Eucgr.A01119' => 'egr', 'Eucgr.E04043' => 'egr', 'Eucgr.J00428' => 'egr', 'Eucgr.J00958' => 'egr', 'FAN11G3091' => 'fan', 'FAN11G3651' => 'fan', 'FAN16G2566' => 'fan', 'FAN21G3155' => 'fan', 'FAN21G3400' => 'fan', 'FAN21G3543' => 'fan', 'FAN25G0234' => 'fan', 'FAN25G1422' => 'fan', 'FAN25G3392' => 'fan', 'FvH4_3g01940' => 'fve', 'FvH4_3g29870' => 'fve', 'FvH4_3g33680' => 'fve', 'Glyma.09G004200' => 'gma', 'Glyma.11G151288' => 'gma', 'Glyma.11G189100' => 'gma', 'Glyma.12G072500' => 'gma', 'Glyma.12G085500' => 'gma', 'Glyma.12G181800' => 'gma', 'Glyma.12G193000' => 'gma', 'Glyma.13G309300' => 'gma', 'Glyma.13G319000' => 'gma', 'Glyma.17G012600' => 'gma', 'Gohir.A06G148600' => 'ghi', 'Gohir.A07G115800' => 'ghi', 'Gohir.A08G003600' => 'ghi', 'Gohir.A09G093300' => 'ghi', 'Gohir.A09G105400' => 'ghi', 'Gohir.A09G105500' => 'ghi', 'Gohir.D06G154600' => 'ghi', 'Gohir.D07G120200' => 'ghi', 'Gohir.D08G013900' => 'ghi', 'Gohir.D09G093100' => 'ghi', 'Gohir.D09G102200' => 'ghi', 'Gohir.D09G102300' => 'ghi', 'Gorai.001G129400' => 'gra', 'Gorai.004G008200' => 'gra', 'Gorai.006G109800' => 'gra', 'Gorai.006G119500' => 'gra', 'Gorai.006G121300' => 'gra', 'Gorai.010G180700' => 'gra', 'GSVIVG01012716001' => 'vvi', 'GSVIVG01025118001' => 'vvi', 'GSVIVG01030439001' => 'vvi', 'GSVIVG01031397001' => 'vvi', 'HanXRQChr01g0004201' => 'han', 'HanXRQChr02g0054941' => 'han', 'HanXRQChr05g0141811' => 'han', 'HanXRQChr07g0197751' => 'han', 'HanXRQChr11g0346691' => 'han', 'HanXRQChr13g0396971' => 'han', 'HanXRQChr14g0432951' => 'han', 'HanXRQChr14g0452001' => 'han', 'HanXRQChr15g0496681' => 'han', 'HanXRQChr17g0557491' => 'han', 'HanXRQChr17g0557501' => 'han', 'Haze_06809' => 'cav', 'Haze_12852' => 'cav', 'Haze_15850' => 'cav', 'Haze_23446' => 'cav', 'Haze_23942' => 'cav', 'Haze_23943' => 'cav', 'Hma1.2p1_0091F.1_g046450' => 'hma', 'Hma1.2p1_0128F.1_g059910' => 'hma', 'Hma1.2p1_0249F.1_g102260' => 'hma', 'Hma1.2p1_0453F.1_g156190' => 'hma', 'Hma1.2p1_0695F.1_g204380' => 'hma', 'Hma1.2p1_0749F.1_g212650' => 'hma', 'Hma1.2p1_2156F.1_g315420' => 'hma', 'Hma1.2p1_2686F.1_g326940' => 'hma', 'HPP92_006428' => 'vpl', 'HPP92_012069' => 'vpl', 'HPP92_014129' => 'vpl', 'HPP92_014133' => 'vpl', 'HPP92_017315' => 'vpl', 'HPP92_026445' => 'vpl', 'HPP92_026446' => 'vpl', 'Hund00774' => 'sun', 'Hund07682' => 'sun', 'Hund21413' => 'sun', 'Hund23462' => 'sun', 'Hund23463' => 'sun', 'Lalb_Chr03g0027911' => 'lal', 'Lalb_Chr13g0304271' => 'lal', 'Lalb_Chr19g0137471' => 'lal', 'Lalb_Chr22g0350651' => 'lal', 'Lalb_Chr24g0395151' => 'lal', 'Lj1A1231T40' => 'lonja', 'Lj1A221T48' => 'lonja', 'Lj1C924T12' => 'lonja', 'Lj2C993G6' => 'lonja', 'Lj3g0005790' => 'lja', 'Lj3g0015432' => 'lja', 'Lj3g0017722' => 'lja', 'Lj3g0018497' => 'lja', 'Lj4g0025071' => 'lja', 'Lsat_1_v5_gn_1_129680' => 'lsa', 'Lsat_1_v5_gn_2_25321' => 'lsa', 'Lsat_1_v5_gn_2_95461' => 'lsa', 'Lsat_1_v5_gn_4_159620' => 'lsa', 'Lsat_1_v5_gn_6_41301' => 'lsa', 'Lsat_1_v5_gn_6_74660' => 'lsa', 'Lsat_1_v5_gn_7_11520' => 'lsa', 'Lsat_1_v5_gn_9_67680' => 'lsa', 'Manes.04G008300' => 'mes', 'Manes.04G008400' => 'mes', 'Manes.04G026500' => 'mes', 'Manes.10G135300' => 'mes', 'Manes.11G157300' => 'mes', 'Manes.12G074000' => 'mes', 'Manes.16G006200' => 'mes', 'Manes.17G026400' => 'mes', 'Mapoly0024s0086' => 'mpo', 'Mapoly0024s0087' => 'mpo', 'Mapoly0071s0057' => 'mpo', 'Mapoly0204s0012' => 'mpo', 'MBI04_g37681_MAGBIO' => 'mbi', 'MBI05_g17779_MAGBIO' => 'mbi', 'MBI12_g31184_MAGBIO' => 'mbi', 'MBI17_g11083_MAGBIO' => 'mbi', 'MBI18_g03883_MAGBIO' => 'mbi', 'MBI18_g28940_MAGBIO' => 'mbi', 'MCO01G690' => 'mco', 'MD03G1109900' => 'mdo', 'MD03G1134800' => 'mdo', 'MD05G1348000' => 'mdo', 'MD10G1322400' => 'mdo', 'MD11G1123300' => 'mdo', 'MD11G1157600' => 'mdo', 'Medtr2g084875' => 'mtr', 'Medtr2g088130' => 'mtr', 'Medtr4g055310' => 'mtr', 'Medtr4g061070' => 'mtr', 'Medtr4g132250' => 'mtr', 'MELO3C004795.2' => 'cme', 'MELO3C004797.2' => 'cme', 'MELO3C007396.2' => 'cme', 'MELO3C019277.2' => 'cme', 'MELO3C021449.2' => 'cme', 'MELO3C025736.2' => 'cme', 'Migut.D02175' => 'egut', 'Migut.H01573' => 'egut', 'Migut.M01327' => 'egut', 'Migut.N02513' => 'egut', 'MSTRG.14638' => 'ama', 'MSTRG.18632' => 'ama', 'MSTRG.7203' => 'ama', 'Nitab4.5_0000533g0140' => 'nta', 'Nitab4.5_0000888g0150' => 'nta', 'Nitab4.5_0001453g0040' => 'nta', 'Nitab4.5_0002827g0090' => 'nta', 'Nitab4.5_0003082g0040' => 'nta', 'Nitab4.5_0007799g0040' => 'nta', 'Nitab4.5_0008983g0010' => 'nta', 'Nitab4.5_0009017g0020' => 'nta', 'Nn1g02132' => 'nnu', 'Nn1g03492' => 'nnu', 'Nn1g03493' => 'nnu', 'Nn1g03494' => 'nnu', 'Nn1g07164' => 'nnu', 'Nn1g07291' => 'nnu', 'Nn2g10655' => 'nnu', 'Nn2g11652' => 'nnu', 'Nn2g14008' => 'nnu', 'Nn3g17476' => 'nnu', 'Nn3g17477' => 'nnu', 'Nn4g22370' => 'nnu', 'Nn4g25255' => 'nnu', 'Nn5g27755' => 'nnu', 'Nn6g34260' => 'nnu', 'Nn6g35041' => 'nnu', 'Oeu005924.1' => 'oeu', 'Oeu008383.1' => 'oeu', 'Oeu014928.1' => 'oeu', 'Oeu019889.1' => 'oeu', 'Oeu022271.1' => 'oeu', 'Oeu025271.1' => 'oeu', 'Oeu036302.1' => 'oeu', 'Oeu044100.1' => 'oeu', 'Os01g0528300' => 'osa', 'Os03g0286200' => 'osa', 'Os04g0406600' => 'osa', 'Os07g0512000' => 'osa', 'Os07g0694600' => 'osa', 'Os08g0411000' => 'osa', 'Os09g0565700' => 'osa', 'Os09g0566050' => 'osa', 'Os10g0523700' => 'osa', 'Peaxi162Scf00002g00514' => 'pax', 'Peaxi162Scf00047g01817' => 'pax', 'Peaxi162Scf00114g00001' => 'pax', 'Peaxi162Scf00147g00613' => 'pax', 'Peaxi162Scf00389g00425' => 'pax', 'PGR042G1139' => 'pgr', 'PGR042G3273' => 'pgr', 'PGR102G2180' => 'pgr', 'PGR119G0234' => 'pgr', 'PGR119G0668' => 'pgr', 'PGSC0003DMG400007122' => 'stu', 'PGSC0003DMG400016478' => 'stu', 'PGSC0003DMG400025374' => 'stu', 'PGSC0003DMG400026536' => 'stu', 'Phvul.003G079600' => 'pvu', 'Phvul.005G115600' => 'pvu', 'Phvul.005G127100' => 'pvu', 'Phvul.006G149500' => 'pvu', 'Phvul.006G149600' => 'pvu', 'Phvul.011G071800' => 'pvu', 'Phvul.011G090400' => 'pvu', 'Potri.004G013400' => 'ptr', 'Potri.004G188100' => 'ptr', 'Potri.008G195500' => 'ptr', 'Potri.009G148800' => 'ptr', 'Potri.011G004700' => 'ptr', 'Pp3c17_22810' => 'ppa', 'Pp3c18_4480' => 'ppa', 'Pp3c19_13030' => 'ppa', 'Pp3c1_33620' => 'ppa', 'Pp3c2_9380' => 'ppa', 'PRCOL_00001023' => 'pco', 'Prupe.3G216300' => 'ppe', 'Prupe.4G019500' => 'ppe', 'Prupe.6G092500' => 'ppe', 'Prupe.6G119200' => 'ppe', 'Psat0s1945g0080' => 'psa', 'Psat0s4167g0040' => 'psa', 'Psat1g185800' => 'psa', 'Psat4g006440' => 'psa', 'Psat4g006480' => 'psa', 'Psat4g168120' => 'psa', 'Psat5g255680' => 'psa', 'Psat5g261760' => 'psa', 'Psat7g222120' => 'psa', 'PSO063G7252' => 'pso', 'PSO170G4778' => 'pso', 'PSO210G2249' => 'pso', 'PSO339G2411' => 'pso', 'PSO339G2457' => 'pso', 'PSO339G2854' => 'pso', 'PSO339G4288' => 'pso', 'PSO339G4615' => 'pso', 'PSO384G2796' => 'pso', 'PSO384G2940' => 'pso', 'PSO384G4227' => 'pso', 'PSO478G1425' => 'pso', 'PSO541G3863' => 'pso', 'PSO675G0507' => 'pso', 'PSO782G0338' => 'pso', 'PSO832G0644' => 'pso', 'QL01p013664' => 'qlo', 'QL01p036598' => 'qlo', 'QL05p072984' => 'qlo', 'QL08p005768' => 'qlo', 'QL08p032743' => 'qlo', 'QL93p0073_0439' => 'qlo', 'QL93p0073_0444' => 'qlo', 'RcHm_v2.0_Chr5g0002851' => 'rch', 'RcHm_v2.0_Chr5g0055201' => 'rch', 'RcHm_v2.0_Chr5g0061191' => 'rch', 'RcHm_v2.0_Chr7g0203231' => 'rch', 'Rhsim01G0208100' => 'rsi', 'Rhsim01G0208200' => 'rsi', 'Rhsim02G0106500' => 'rsi', 'Rhsim03G0107900' => 'rsi', 'Rhsim06G0163400' => 'rsi', 'Rhsim13G0105200' => 'rsi', 'Sabra04G0006300' => 'sbr', 'Sabra04G0127000' => 'sbr', 'Sabra08G0148700' => 'sbr', 'Sabra09G0117400' => 'sbr', 'SalBow1G3326' => 'sbo', 'SalBow3G3228' => 'sbo', 'SalBow6G1634' => 'sbo', 'SalBow6G3603' => 'sbo', 'SalBow6G5266' => 'sbo', 'SalBow7G2265' => 'sbo', 'SalBow8G0850' => 'sbo', 'SalBow8G2592' => 'sbo', 'Sc05g0009240' => 'sci', 'Sc12g0002300' => 'sci', 'Sc21g0000100' => 'sci', 'Sc21g0004720' => 'sci', 'Sed0002949' => 'sed', 'Sed0004114' => 'sed', 'Sed0004306' => 'sed', 'Sed0006172' => 'sed', 'Sed0008413' => 'sed', 'Sed0013809' => 'sed', 'Sed0019556' => 'sed', 'SEGI_03570' => 'sgi', 'SEGI_07859' => 'sgi', 'SEGI_15042' => 'sgi', 'SEGI_16263' => 'sgi', 'SEGI_16552' => 'sgi', 'SEGI_24331' => 'sgi', 'SEGI_27316' => 'sgi', 'SEGI_29521' => 'sgi', 'SEGI_41342' => 'sgi', 'SGA_v2.0_scaffold27G11617' => 'sas', 'SGA_v2.0_scaffold316G48428' => 'sas', 'SGA_v2.0_scaffold49G18261' => 'sas', 'SGA_v2.0_scaffold7G03831' => 'sas', 'SGA_v2.0_scaffold93G28359' => 'sas', 'SHI02210' => 'shi', 'SHI06028' => 'shi', 'SHI06321' => 'shi', 'SMO111G0012' => 'smo', 'SMO228G0080' => 'smo', 'SMO356G0756' => 'smo', 'Solyc02g080620.3' => 'sly', 'Solyc06g074530.1' => 'sly', 'Solyc11g066890.1' => 'sly', 'Solyc11g072520.3' => 'sly', 'Sopen02g025330' => 'spe', 'Sopen06g031000' => 'spe', 'Sopen09g008240' => 'spe', 'Sopen09g025210' => 'spe', 'Sopen11g026600' => 'spe', 'Sopen11g030170' => 'spe', 'Sp1g10420' => 'spa', 'Sp3g06570' => 'spa', 'Sp4g10660' => 'spa', 'Sp5g16460' => 'spa', 'Sp6g22710' => 'spa', 'TAR365G0112' => 'tar', 'TAR369G0717' => 'tar', 'TAR374G0976' => 'tar', 'TAR623G1128' => 'tar', 'TAR626G1937' => 'tar', 'TAR627G0123' => 'tar', 'TAR628G0305' => 'tar', 'TAR636G1176' => 'tar', 'TAR636G2442' => 'tar', 'THA.LOC104800556' => 'tha', 'THA.LOC104809501' => 'tha', 'THA.LOC104815126' => 'tha', 'THA.LOC104815732' => 'tha', 'THA.LOC104823528' => 'tha', 'Thecc.02G365600' => 'tca', 'Thecc.06G222300' => 'tca', 'Thecc.09G261800' => 'tca', 'Thecc.09G291400' => 'tca', 'Thhalv10003028m.g' => 'esa', 'Thhalv10007886m.g' => 'esa', 'Thhalv10016085m.g' => 'esa', 'Thhalv10016681m.g' => 'esa', 'Thhalv10020951m.g' => 'esa', 'TPR.G15598' => 'tpr', 'TPR.G29305' => 'tpr', 'TPR.G32395' => 'tpr', 'TPR.G36998' => 'tpr', 'TPR.G4227' => 'tpr', 'TWI18G1433' => 'twi', 'TWI31G0755' => 'twi', 'TWI38G0912' => 'twi', 'TWI75G1097' => 'twi', 'TWI75G1619' => 'twi', 'TWI79G1336' => 'twi', 'unitig_0.g943' => 'ugi', 'unitig_0.g944' => 'ugi', 'unitig_22.g6646' => 'ugi', 'unitig_37.g12681' => 'ugi', 'unitig_8.g3290' => 'ugi', 'vmacro03278' => 'vma', 'vmacro12197' => 'vma', 'vmacro14478' => 'vma', 'vmacro15787' => 'vma', 'vmacro15789' => 'vma', 'vmacro15790' => 'vma', 'vmacro15806' => 'vma', 'vmacro22907' => 'vma', 'vmacro22908' => 'vma', 'vmacro22909' => 'vma', 'vmacro23108' => 'vma', 'VMungo0540G0540' => 'vmu', 'VMungo0540G2468' => 'vmu', 'VMungo1080G0390' => 'vmu', 'VMungo1080G1165' => 'vmu', 'VMungo1127G0170' => 'vmu', 'VMungo1127G2099' => 'vmu', 'VMungo1215G3013' => 'vmu', 'Zm00001eb013110' => 'zma', 'Zm00001eb084260' => 'zma', 'Zm00001eb096110' => 'zma', 'Zm00001eb217510' => 'zma', 'Zm00001eb322550' => 'zma', 'Zm00001eb390770' => 'zma', 'Zm00001eb397170' => 'zma', 'Zm00001eb404610' => 'zma', 'Zm00001eb421790' => 'zma' ) $gf_id = 'HOM05D000911' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000911' ) $data_identifier = 'HOM05D000911' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 16, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 5, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 6, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 8, 'nnu' => (int) 16, 'oeu' => (int) 8, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 5, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 16, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421790' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000911', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27780' => 'bna', 'A03p35380' => 'bna', 'A04p21160' => 'bna', 'A05p40570' => 'bna', 'A06p26900' => 'bna', 'A08p33230' => 'bna', 'A09p65960' => 'bna', 'A10p18290' => 'bna', 'Aa31LG1G12990' => 'aar', 'Aa31LG1G2980' => 'aar', 'Aa31LG4G14320' => 'aar', 'Aa31LG7G11800' => 'aar', 'Aa31sc36G50' => 'aar', 'Aa31sc36G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3721' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5459' => 'aag', 'Actinidia03028' => 'ach', 'Actinidia03753' => 'ach', 'Actinidia04187' => 'ach', 'Actinidia05509' => 'ach', 'Actinidia24180' => 'ach', 'Actinidia26906' => 'ach', 'Actinidia37097' => 'ach', 'Actinidia38249' => 'ach', 'Ah.01g003470' => 'amhyb', 'Ah.01g004580' => 'amhyb', 'Ah.01g014850' => 'amhyb', 'Ah.01g016830' => 'amhyb', 'Ah.14g088000' => 'amhyb', 'AL1G22980' => 'aly', 'AL3G18990' => 'aly', 'AL4G22440' => 'aly', 'AL4G33180' => 'aly', 'AL5G22920' => 'aly', 'AL6G33660' => 'aly', 'AL8G20720' => 'aly', 'Aqoxy1G00935' => 'aox', 'Aqoxy1G02094' => 'aox', 'Aqoxy2G01239' => 'aox', 'Aqoxy4G01870' => 'aox', 'Aqoxy7G00450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.36ZVTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71EM27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5D6C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH3WRE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3NCM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RIM768' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YB5YRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z36GDV' => 'arhy', 'AT1G08250' => 'ath', 'AT1G11790' => 'ath', 'AT2G27820' => 'ath', 'AT3G07630' => 'ath', 'AT3G44720' => 'ath', 'AT5G22630' => 'ath', 'ATR0693G304' => 'atr', 'ATR0794G109' => 'atr', 'ATR0820G120' => 'atr', 'ATR1159G064' => 'atr', 'Atru.chr10.2239' => 'acertr', 'Atru.chr3.3371' => 'acertr', 'Atru.chr6.3202' => 'acertr', 'AUR62006499' => 'cqu', 'AUR62012718' => 'cqu', 'AUR62021938' => 'cqu', 'AUR62023932' => 'cqu', 'AUR62025034' => 'cqu', 'AUR62025035' => 'cqu', 'AUR62038307' => 'cqu', 'AUR62043466' => 'cqu', 'BcaB02g10748' => 'bca', 'BcaB03g13231' => 'bca', 'BcaB03g14689' => 'bca', 'BcaB05g22716' => 'bca', 'BcaB06g28172' => 'bca', 'BcaB08g36413' => 'bca', 'BcaC01g02186' => 'bca', 'BcaC01g04272' => 'bca', 'BcaC02g08080' => 'bca', 'BcaC02g08227' => 'bca', 'BcaC03g13901' => 'bca', 'BcaC04g19593' => 'bca', 'BcaC04g20874' => 'bca', 'BcaC05g29557' => 'bca', 'BcaC06g35505' => 'bca', 'BcaC07g41954' => 'bca', 'BcaC07g41955' => 'bca', 'BcaC07g41956' => 'bca', 'BcaC07g42519' => 'bca', 'BcaC07g42520' => 'bca', 'BcaC07g42523' => 'bca', 'BcaC07g42524' => 'bca', 'BcaC07g42525' => 'bca', 'BcaC08g47480' => 'bca', 'BcaC08g47481' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00530' => 'bna', 'BolC2t07178H' => 'bol', 'BolC3t16567H' => 'bol', 'BolC4t27234H' => 'bol', 'BolC5t29728H' => 'bol', 'BolC5t34622H' => 'bol', 'BolC6t40321H' => 'bol', 'BolC7t42028H' => 'bol', 'BolC8t49125H' => 'bol', 'BolC8t52538H' => 'bol', 'BolC8t52539H' => 'bol', 'BolC9t56681H' => 'bol', 'BolC9t58266H' => 'bol', 'BolSC21t60294H' => 'bol', 'BraA02t05670Z' => 'bra', 'BraA03t12716Z' => 'bra', 'BraA04t17685Z' => 'bra', 'BraA05t22788Z' => 'bra', 'BraA06t24032Z' => 'bra', 'BraA06t25625Z' => 'bra', 'BraA07t27930Z' => 'bra', 'BraA08t35242Z' => 'bra', 'BraA09t38609Z' => 'bra', 'BraA10t43905Z' => 'bra', 'C02p11060' => 'bna', 'C03p42990' => 'bna', 'C03p67310' => 'bna', 'C04p56990' => 'bna', 'C04p58660' => 'bna', 'C05p09890' => 'bna', 'C05p59680' => 'bna', 'C06p19830' => 'bna', 'C06p53040' => 'bna', 'C07p15230' => 'bna', 'C08p50070' => 'bna', 'C08p50090' => 'bna', 'C09p38330' => 'bna', 'C09p53940' => 'bna', 'CAN.G1014.1' => 'can', 'CAN.G644.30' => 'can', 'CAN.G84.47' => 'can', 'CAN.G919.8' => 'can', 'CANSAT54G0113' => 'cansat', 'CANSAT54G1286' => 'cansat', 'CANSAT64G1020' => 'cansat', 'CARHR008080' => 'chi', 'CARHR008090' => 'chi', 'CARHR012130' => 'chi', 'CARHR038390' => 'chi', 'CARHR082330' => 'chi', 'CARHR120520' => 'chi', 'CARHR151470' => 'chi', 'CARHR190950' => 'chi', 'Carub.0001s0760' => 'cru', 'Carub.0001s1146' => 'cru', 'Carub.0003s0721' => 'cru', 'Carub.0004s0858' => 'cru', 'Carub.0005s1040' => 'cru', 'Carub.0006s2035' => 'cru', 'Carub.0015s0005' => 'cru', 'Ca_01607_v3' => 'car', 'Ca_01677_v3' => 'car', 'Ca_06087_v3' => 'car', 'Ca_19238_v3' => 'car', 'Ca_19373_v3' => 'car', 'Ca_21079_v3' => 'car', 'CBR_g54016' => 'cbr', 'CBR_g54018' => 'cbr', 'CBR_g54020' => 'cbr', 'Cc01_g09780' => 'ccan', 'Cc01_g11680' => 'ccan', 'Cc02_g15610' => 'ccan', 'Cc05_g04350' => 'ccan', 'Cc09_g01580' => 'ccan', 'CDE01G0795' => 'cde', 'CDE02G2024' => 'cde', 'CDE02G2260' => 'cde', 'CDE02G4561' => 'cde', 'CDE05G2733' => 'cde', 'CDE05G3422' => 'cde', 'CDE06G2003' => 'cde', 'CDE08G0576' => 'cde', 'CDE09G0048' => 'cde', 'CDE11G0805' => 'cde', 'Cfa003644' => 'cfa', 'Cfa006290' => 'cfa', 'Cfa010080' => 'cfa', 'Cfa011376' => 'cfa', 'Cfa011576' => 'cfa', 'Cfa011577' => 'cfa', 'Cfa014389' => 'cfa', 'Ciclev10006044m.g' => 'ccl', 'Ciclev10006954m.g' => 'ccl', 'Ciclev10015131m.g' => 'ccl', 'Ciclev10015580m.g' => 'ccl', 'Ciclev10028359m.g' => 'ccl', 'Ciclev10028573m.g' => 'ccl', 'CiPaw.03G159300' => 'cil', 'CiPaw.04G115100' => 'cil', 'CiPaw.09G092800' => 'cil', 'CiPaw.10G071800' => 'cil', 'CiPaw.13G105800' => 'cil', 'CiPaw.13G141000' => 'cil', 'CiPaw.14G103400' => 'cil', 'ClCG01G012700' => 'cla', 'ClCG01G012720' => 'cla', 'ClCG01G021920' => 'cla', 'ClCG02G008870' => 'cla', 'ClCG02G020840' => 'cla', 'ClCG02G021930' => 'cla', 'COL.COLO4_19302' => 'col', 'COL.COLO4_25262' => 'col', 'COL.COLO4_31788' => 'col', 'Cpa.g.c34684' => 'cpa', 'Cpa.g.c36520.1' => 'cpa', 'Cpa.g.c45626' => 'cpa', 'Cpa.g.sc121.17' => 'cpa', 'Cpa.g.sc13.22' => 'cpa', 'Cpa.g.sc87.88' => 'cpa', 'Cre06.g261800' => 'cre', 'CsaV3_1G014500' => 'csa', 'CsaV3_1G014510' => 'csa', 'CsaV3_2G034880' => 'csa', 'CsaV3_6G014760' => 'csa', 'CsaV3_6G021500' => 'csa', 'CsaV3_6G048980' => 'csa', 'CSS0002511' => 'camsi', 'CSS0007556' => 'camsi', 'CSS0008532' => 'camsi', 'CSS0009709' => 'camsi', 'CSS0010486' => 'camsi', 'CSS0016768' => 'camsi', 'CSS0023512' => 'camsi', 'CSS0025341' => 'camsi', 'CSS0027999' => 'camsi', 'CSS0028944' => 'camsi', 'CSS0032292' => 'camsi', 'CSS0032464' => 'camsi', 'CSS0037153' => 'camsi', 'CSS0039256' => 'camsi', 'CSS0048392' => 'camsi', 'CSS0050458' => 'camsi', 'DCAR_004224' => 'dca', 'DCAR_006147' => 'dca', 'DCAR_006465' => 'dca', 'DCAR_008159' => 'dca', 'DCAR_012164' => 'dca', 'DCAR_019764' => 'dca', 'Dinv05418' => 'din', 'Dinv10839' => 'din', 'Dinv12521' => 'din', 'Dinv13900' => 'din', 'Dinv29426' => 'din', 'Duzib150G0263' => 'dzi', 'Duzib168G1178' => 'dzi', 'Duzib168G1924' => 'dzi', 'Duzib170G0299' => 'dzi', 'Duzib170G0813' => 'dzi', 'Duzib235G1128' => 'dzi', 'Duzib248G1060' => 'dzi', 'ECA232G1910' => 'eca', 'ECA233G4621' => 'eca', 'ECA238G1216' => 'eca', 'ECA238G1784' => 'eca', 'ECA248G1242' => 'eca', 'EL10Ac8g20071' => 'bvu', 'EL10Ac9g21086' => 'bvu', 'EL10Ac9g22407' => 'bvu', 'EL10Ac9g22412' => 'bvu', 'Eucgr.A01119' => 'egr', 'Eucgr.E04043' => 'egr', 'Eucgr.J00428' => 'egr', 'Eucgr.J00958' => 'egr', 'FAN11G3091' => 'fan', 'FAN11G3651' => 'fan', 'FAN16G2566' => 'fan', 'FAN21G3155' => 'fan', 'FAN21G3400' => 'fan', 'FAN21G3543' => 'fan', 'FAN25G0234' => 'fan', 'FAN25G1422' => 'fan', 'FAN25G3392' => 'fan', 'FvH4_3g01940' => 'fve', 'FvH4_3g29870' => 'fve', 'FvH4_3g33680' => 'fve', 'Glyma.09G004200' => 'gma', 'Glyma.11G151288' => 'gma', 'Glyma.11G189100' => 'gma', 'Glyma.12G072500' => 'gma', 'Glyma.12G085500' => 'gma', 'Glyma.12G181800' => 'gma', 'Glyma.12G193000' => 'gma', 'Glyma.13G309300' => 'gma', 'Glyma.13G319000' => 'gma', 'Glyma.17G012600' => 'gma', 'Gohir.A06G148600' => 'ghi', 'Gohir.A07G115800' => 'ghi', 'Gohir.A08G003600' => 'ghi', 'Gohir.A09G093300' => 'ghi', 'Gohir.A09G105400' => 'ghi', 'Gohir.A09G105500' => 'ghi', 'Gohir.D06G154600' => 'ghi', 'Gohir.D07G120200' => 'ghi', 'Gohir.D08G013900' => 'ghi', 'Gohir.D09G093100' => 'ghi', 'Gohir.D09G102200' => 'ghi', 'Gohir.D09G102300' => 'ghi', 'Gorai.001G129400' => 'gra', 'Gorai.004G008200' => 'gra', 'Gorai.006G109800' => 'gra', 'Gorai.006G119500' => 'gra', 'Gorai.006G121300' => 'gra', 'Gorai.010G180700' => 'gra', 'GSVIVG01012716001' => 'vvi', 'GSVIVG01025118001' => 'vvi', 'GSVIVG01030439001' => 'vvi', 'GSVIVG01031397001' => 'vvi', 'HanXRQChr01g0004201' => 'han', 'HanXRQChr02g0054941' => 'han', 'HanXRQChr05g0141811' => 'han', 'HanXRQChr07g0197751' => 'han', 'HanXRQChr11g0346691' => 'han', 'HanXRQChr13g0396971' => 'han', 'HanXRQChr14g0432951' => 'han', 'HanXRQChr14g0452001' => 'han', 'HanXRQChr15g0496681' => 'han', 'HanXRQChr17g0557491' => 'han', 'HanXRQChr17g0557501' => 'han', 'Haze_06809' => 'cav', 'Haze_12852' => 'cav', 'Haze_15850' => 'cav', 'Haze_23446' => 'cav', 'Haze_23942' => 'cav', 'Haze_23943' => 'cav', 'Hma1.2p1_0091F.1_g046450' => 'hma', 'Hma1.2p1_0128F.1_g059910' => 'hma', 'Hma1.2p1_0249F.1_g102260' => 'hma', 'Hma1.2p1_0453F.1_g156190' => 'hma', 'Hma1.2p1_0695F.1_g204380' => 'hma', 'Hma1.2p1_0749F.1_g212650' => 'hma', 'Hma1.2p1_2156F.1_g315420' => 'hma', 'Hma1.2p1_2686F.1_g326940' => 'hma', 'HPP92_006428' => 'vpl', 'HPP92_012069' => 'vpl', 'HPP92_014129' => 'vpl', 'HPP92_014133' => 'vpl', 'HPP92_017315' => 'vpl', 'HPP92_026445' => 'vpl', 'HPP92_026446' => 'vpl', 'Hund00774' => 'sun', 'Hund07682' => 'sun', 'Hund21413' => 'sun', 'Hund23462' => 'sun', 'Hund23463' => 'sun', 'Lalb_Chr03g0027911' => 'lal', 'Lalb_Chr13g0304271' => 'lal', 'Lalb_Chr19g0137471' => 'lal', 'Lalb_Chr22g0350651' => 'lal', 'Lalb_Chr24g0395151' => 'lal', 'Lj1A1231T40' => 'lonja', 'Lj1A221T48' => 'lonja', 'Lj1C924T12' => 'lonja', 'Lj2C993G6' => 'lonja', 'Lj3g0005790' => 'lja', 'Lj3g0015432' => 'lja', 'Lj3g0017722' => 'lja', 'Lj3g0018497' => 'lja', 'Lj4g0025071' => 'lja', 'Lsat_1_v5_gn_1_129680' => 'lsa', 'Lsat_1_v5_gn_2_25321' => 'lsa', 'Lsat_1_v5_gn_2_95461' => 'lsa', 'Lsat_1_v5_gn_4_159620' => 'lsa', 'Lsat_1_v5_gn_6_41301' => 'lsa', 'Lsat_1_v5_gn_6_74660' => 'lsa', 'Lsat_1_v5_gn_7_11520' => 'lsa', 'Lsat_1_v5_gn_9_67680' => 'lsa', 'Manes.04G008300' => 'mes', 'Manes.04G008400' => 'mes', 'Manes.04G026500' => 'mes', 'Manes.10G135300' => 'mes', 'Manes.11G157300' => 'mes', 'Manes.12G074000' => 'mes', 'Manes.16G006200' => 'mes', 'Manes.17G026400' => 'mes', 'Mapoly0024s0086' => 'mpo', 'Mapoly0024s0087' => 'mpo', 'Mapoly0071s0057' => 'mpo', 'Mapoly0204s0012' => 'mpo', 'MBI04_g37681_MAGBIO' => 'mbi', 'MBI05_g17779_MAGBIO' => 'mbi', 'MBI12_g31184_MAGBIO' => 'mbi', 'MBI17_g11083_MAGBIO' => 'mbi', 'MBI18_g03883_MAGBIO' => 'mbi', 'MBI18_g28940_MAGBIO' => 'mbi', 'MCO01G690' => 'mco', 'MD03G1109900' => 'mdo', 'MD03G1134800' => 'mdo', 'MD05G1348000' => 'mdo', 'MD10G1322400' => 'mdo', 'MD11G1123300' => 'mdo', 'MD11G1157600' => 'mdo', 'Medtr2g084875' => 'mtr', 'Medtr2g088130' => 'mtr', 'Medtr4g055310' => 'mtr', 'Medtr4g061070' => 'mtr', 'Medtr4g132250' => 'mtr', 'MELO3C004795.2' => 'cme', 'MELO3C004797.2' => 'cme', 'MELO3C007396.2' => 'cme', 'MELO3C019277.2' => 'cme', 'MELO3C021449.2' => 'cme', 'MELO3C025736.2' => 'cme', 'Migut.D02175' => 'egut', 'Migut.H01573' => 'egut', 'Migut.M01327' => 'egut', 'Migut.N02513' => 'egut', 'MSTRG.14638' => 'ama', 'MSTRG.18632' => 'ama', 'MSTRG.7203' => 'ama', 'Nitab4.5_0000533g0140' => 'nta', 'Nitab4.5_0000888g0150' => 'nta', 'Nitab4.5_0001453g0040' => 'nta', 'Nitab4.5_0002827g0090' => 'nta', 'Nitab4.5_0003082g0040' => 'nta', 'Nitab4.5_0007799g0040' => 'nta', 'Nitab4.5_0008983g0010' => 'nta', 'Nitab4.5_0009017g0020' => 'nta', 'Nn1g02132' => 'nnu', 'Nn1g03492' => 'nnu', 'Nn1g03493' => 'nnu', 'Nn1g03494' => 'nnu', 'Nn1g07164' => 'nnu', 'Nn1g07291' => 'nnu', 'Nn2g10655' => 'nnu', 'Nn2g11652' => 'nnu', 'Nn2g14008' => 'nnu', 'Nn3g17476' => 'nnu', 'Nn3g17477' => 'nnu', 'Nn4g22370' => 'nnu', 'Nn4g25255' => 'nnu', 'Nn5g27755' => 'nnu', 'Nn6g34260' => 'nnu', 'Nn6g35041' => 'nnu', 'Oeu005924.1' => 'oeu', 'Oeu008383.1' => 'oeu', 'Oeu014928.1' => 'oeu', 'Oeu019889.1' => 'oeu', 'Oeu022271.1' => 'oeu', 'Oeu025271.1' => 'oeu', 'Oeu036302.1' => 'oeu', 'Oeu044100.1' => 'oeu', 'Os01g0528300' => 'osa', 'Os03g0286200' => 'osa', 'Os04g0406600' => 'osa', 'Os07g0512000' => 'osa', 'Os07g0694600' => 'osa', 'Os08g0411000' => 'osa', 'Os09g0565700' => 'osa', 'Os09g0566050' => 'osa', 'Os10g0523700' => 'osa', 'Peaxi162Scf00002g00514' => 'pax', 'Peaxi162Scf00047g01817' => 'pax', 'Peaxi162Scf00114g00001' => 'pax', 'Peaxi162Scf00147g00613' => 'pax', 'Peaxi162Scf00389g00425' => 'pax', 'PGR042G1139' => 'pgr', 'PGR042G3273' => 'pgr', 'PGR102G2180' => 'pgr', 'PGR119G0234' => 'pgr', 'PGR119G0668' => 'pgr', 'PGSC0003DMG400007122' => 'stu', 'PGSC0003DMG400016478' => 'stu', 'PGSC0003DMG400025374' => 'stu', 'PGSC0003DMG400026536' => 'stu', 'Phvul.003G079600' => 'pvu', 'Phvul.005G115600' => 'pvu', 'Phvul.005G127100' => 'pvu', 'Phvul.006G149500' => 'pvu', 'Phvul.006G149600' => 'pvu', 'Phvul.011G071800' => 'pvu', 'Phvul.011G090400' => 'pvu', 'Potri.004G013400' => 'ptr', 'Potri.004G188100' => 'ptr', 'Potri.008G195500' => 'ptr', 'Potri.009G148800' => 'ptr', 'Potri.011G004700' => 'ptr', 'Pp3c17_22810' => 'ppa', 'Pp3c18_4480' => 'ppa', 'Pp3c19_13030' => 'ppa', 'Pp3c1_33620' => 'ppa', 'Pp3c2_9380' => 'ppa', 'PRCOL_00001023' => 'pco', 'Prupe.3G216300' => 'ppe', 'Prupe.4G019500' => 'ppe', 'Prupe.6G092500' => 'ppe', 'Prupe.6G119200' => 'ppe', 'Psat0s1945g0080' => 'psa', 'Psat0s4167g0040' => 'psa', 'Psat1g185800' => 'psa', 'Psat4g006440' => 'psa', 'Psat4g006480' => 'psa', 'Psat4g168120' => 'psa', 'Psat5g255680' => 'psa', 'Psat5g261760' => 'psa', 'Psat7g222120' => 'psa', 'PSO063G7252' => 'pso', 'PSO170G4778' => 'pso', 'PSO210G2249' => 'pso', 'PSO339G2411' => 'pso', 'PSO339G2457' => 'pso', 'PSO339G2854' => 'pso', 'PSO339G4288' => 'pso', 'PSO339G4615' => 'pso', 'PSO384G2796' => 'pso', 'PSO384G2940' => 'pso', 'PSO384G4227' => 'pso', 'PSO478G1425' => 'pso', 'PSO541G3863' => 'pso', 'PSO675G0507' => 'pso', 'PSO782G0338' => 'pso', 'PSO832G0644' => 'pso', 'QL01p013664' => 'qlo', 'QL01p036598' => 'qlo', 'QL05p072984' => 'qlo', 'QL08p005768' => 'qlo', 'QL08p032743' => 'qlo', 'QL93p0073_0439' => 'qlo', 'QL93p0073_0444' => 'qlo', 'RcHm_v2.0_Chr5g0002851' => 'rch', 'RcHm_v2.0_Chr5g0055201' => 'rch', 'RcHm_v2.0_Chr5g0061191' => 'rch', 'RcHm_v2.0_Chr7g0203231' => 'rch', 'Rhsim01G0208100' => 'rsi', 'Rhsim01G0208200' => 'rsi', 'Rhsim02G0106500' => 'rsi', 'Rhsim03G0107900' => 'rsi', 'Rhsim06G0163400' => 'rsi', 'Rhsim13G0105200' => 'rsi', 'Sabra04G0006300' => 'sbr', 'Sabra04G0127000' => 'sbr', 'Sabra08G0148700' => 'sbr', 'Sabra09G0117400' => 'sbr', 'SalBow1G3326' => 'sbo', 'SalBow3G3228' => 'sbo', 'SalBow6G1634' => 'sbo', 'SalBow6G3603' => 'sbo', 'SalBow6G5266' => 'sbo', 'SalBow7G2265' => 'sbo', 'SalBow8G0850' => 'sbo', 'SalBow8G2592' => 'sbo', 'Sc05g0009240' => 'sci', 'Sc12g0002300' => 'sci', 'Sc21g0000100' => 'sci', 'Sc21g0004720' => 'sci', 'Sed0002949' => 'sed', 'Sed0004114' => 'sed', 'Sed0004306' => 'sed', 'Sed0006172' => 'sed', 'Sed0008413' => 'sed', 'Sed0013809' => 'sed', 'Sed0019556' => 'sed', 'SEGI_03570' => 'sgi', 'SEGI_07859' => 'sgi', 'SEGI_15042' => 'sgi', 'SEGI_16263' => 'sgi', 'SEGI_16552' => 'sgi', 'SEGI_24331' => 'sgi', 'SEGI_27316' => 'sgi', 'SEGI_29521' => 'sgi', 'SEGI_41342' => 'sgi', 'SGA_v2.0_scaffold27G11617' => 'sas', 'SGA_v2.0_scaffold316G48428' => 'sas', 'SGA_v2.0_scaffold49G18261' => 'sas', 'SGA_v2.0_scaffold7G03831' => 'sas', 'SGA_v2.0_scaffold93G28359' => 'sas', 'SHI02210' => 'shi', 'SHI06028' => 'shi', 'SHI06321' => 'shi', 'SMO111G0012' => 'smo', 'SMO228G0080' => 'smo', 'SMO356G0756' => 'smo', 'Solyc02g080620.3' => 'sly', 'Solyc06g074530.1' => 'sly', 'Solyc11g066890.1' => 'sly', 'Solyc11g072520.3' => 'sly', 'Sopen02g025330' => 'spe', 'Sopen06g031000' => 'spe', 'Sopen09g008240' => 'spe', 'Sopen09g025210' => 'spe', 'Sopen11g026600' => 'spe', 'Sopen11g030170' => 'spe', 'Sp1g10420' => 'spa', 'Sp3g06570' => 'spa', 'Sp4g10660' => 'spa', 'Sp5g16460' => 'spa', 'Sp6g22710' => 'spa', 'TAR365G0112' => 'tar', 'TAR369G0717' => 'tar', 'TAR374G0976' => 'tar', 'TAR623G1128' => 'tar', 'TAR626G1937' => 'tar', 'TAR627G0123' => 'tar', 'TAR628G0305' => 'tar', 'TAR636G1176' => 'tar', 'TAR636G2442' => 'tar', 'THA.LOC104800556' => 'tha', 'THA.LOC104809501' => 'tha', 'THA.LOC104815126' => 'tha', 'THA.LOC104815732' => 'tha', 'THA.LOC104823528' => 'tha', 'Thecc.02G365600' => 'tca', 'Thecc.06G222300' => 'tca', 'Thecc.09G261800' => 'tca', 'Thecc.09G291400' => 'tca', 'Thhalv10003028m.g' => 'esa', 'Thhalv10007886m.g' => 'esa', 'Thhalv10016085m.g' => 'esa', 'Thhalv10016681m.g' => 'esa', 'Thhalv10020951m.g' => 'esa', 'TPR.G15598' => 'tpr', 'TPR.G29305' => 'tpr', 'TPR.G32395' => 'tpr', 'TPR.G36998' => 'tpr', 'TPR.G4227' => 'tpr', 'TWI18G1433' => 'twi', 'TWI31G0755' => 'twi', 'TWI38G0912' => 'twi', 'TWI75G1097' => 'twi', 'TWI75G1619' => 'twi', 'TWI79G1336' => 'twi', 'unitig_0.g943' => 'ugi', 'unitig_0.g944' => 'ugi', 'unitig_22.g6646' => 'ugi', 'unitig_37.g12681' => 'ugi', 'unitig_8.g3290' => 'ugi', 'vmacro03278' => 'vma', 'vmacro12197' => 'vma', 'vmacro14478' => 'vma', 'vmacro15787' => 'vma', 'vmacro15789' => 'vma', 'vmacro15790' => 'vma', 'vmacro15806' => 'vma', 'vmacro22907' => 'vma', 'vmacro22908' => 'vma', 'vmacro22909' => 'vma', 'vmacro23108' => 'vma', 'VMungo0540G0540' => 'vmu', 'VMungo0540G2468' => 'vmu', 'VMungo1080G0390' => 'vmu', 'VMungo1080G1165' => 'vmu', 'VMungo1127G0170' => 'vmu', 'VMungo1127G2099' => 'vmu', 'VMungo1215G3013' => 'vmu', 'Zm00001eb013110' => 'zma', 'Zm00001eb084260' => 'zma', 'Zm00001eb096110' => 'zma', 'Zm00001eb217510' => 'zma', 'Zm00001eb322550' => 'zma', 'Zm00001eb390770' => 'zma', 'Zm00001eb397170' => 'zma', 'Zm00001eb404610' => 'zma', 'Zm00001eb421790' => 'zma' ), 'gf_id' => 'HOM05D000911', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000911' ), 'data_identifier' => 'HOM05D000911', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000911', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27780' => 'bna', 'A03p35380' => 'bna', 'A04p21160' => 'bna', 'A05p40570' => 'bna', 'A06p26900' => 'bna', 'A08p33230' => 'bna', 'A09p65960' => 'bna', 'A10p18290' => 'bna', 'Aa31LG1G12990' => 'aar', 'Aa31LG1G2980' => 'aar', 'Aa31LG4G14320' => 'aar', 'Aa31LG7G11800' => 'aar', 'Aa31sc36G50' => 'aar', 'Aa31sc36G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3721' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5459' => 'aag', 'Actinidia03028' => 'ach', 'Actinidia03753' => 'ach', 'Actinidia04187' => 'ach', 'Actinidia05509' => 'ach', 'Actinidia24180' => 'ach', 'Actinidia26906' => 'ach', 'Actinidia37097' => 'ach', 'Actinidia38249' => 'ach', 'Ah.01g003470' => 'amhyb', 'Ah.01g004580' => 'amhyb', 'Ah.01g014850' => 'amhyb', 'Ah.01g016830' => 'amhyb', 'Ah.14g088000' => 'amhyb', 'AL1G22980' => 'aly', 'AL3G18990' => 'aly', 'AL4G22440' => 'aly', 'AL4G33180' => 'aly', 'AL5G22920' => 'aly', 'AL6G33660' => 'aly', 'AL8G20720' => 'aly', 'Aqoxy1G00935' => 'aox', 'Aqoxy1G02094' => 'aox', 'Aqoxy2G01239' => 'aox', 'Aqoxy4G01870' => 'aox', 'Aqoxy7G00450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.36ZVTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71EM27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5D6C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH3WRE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3NCM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RIM768' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YB5YRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z36GDV' => 'arhy', 'AT1G08250' => 'ath', 'AT1G11790' => 'ath', 'AT2G27820' => 'ath', 'AT3G07630' => 'ath', 'AT3G44720' => 'ath', 'AT5G22630' => 'ath', 'ATR0693G304' => 'atr', 'ATR0794G109' => 'atr', 'ATR0820G120' => 'atr', 'ATR1159G064' => 'atr', 'Atru.chr10.2239' => 'acertr', 'Atru.chr3.3371' => 'acertr', 'Atru.chr6.3202' => 'acertr', 'AUR62006499' => 'cqu', 'AUR62012718' => 'cqu', 'AUR62021938' => 'cqu', 'AUR62023932' => 'cqu', 'AUR62025034' => 'cqu', 'AUR62025035' => 'cqu', 'AUR62038307' => 'cqu', 'AUR62043466' => 'cqu', 'BcaB02g10748' => 'bca', 'BcaB03g13231' => 'bca', 'BcaB03g14689' => 'bca', 'BcaB05g22716' => 'bca', 'BcaB06g28172' => 'bca', 'BcaB08g36413' => 'bca', 'BcaC01g02186' => 'bca', 'BcaC01g04272' => 'bca', 'BcaC02g08080' => 'bca', 'BcaC02g08227' => 'bca', 'BcaC03g13901' => 'bca', 'BcaC04g19593' => 'bca', 'BcaC04g20874' => 'bca', 'BcaC05g29557' => 'bca', 'BcaC06g35505' => 'bca', 'BcaC07g41954' => 'bca', 'BcaC07g41955' => 'bca', 'BcaC07g41956' => 'bca', 'BcaC07g42519' => 'bca', 'BcaC07g42520' => 'bca', 'BcaC07g42523' => 'bca', 'BcaC07g42524' => 'bca', 'BcaC07g42525' => 'bca', 'BcaC08g47480' => 'bca', 'BcaC08g47481' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00530' => 'bna', 'BolC2t07178H' => 'bol', 'BolC3t16567H' => 'bol', 'BolC4t27234H' => 'bol', 'BolC5t29728H' => 'bol', 'BolC5t34622H' => 'bol', 'BolC6t40321H' => 'bol', 'BolC7t42028H' => 'bol', 'BolC8t49125H' => 'bol', 'BolC8t52538H' => 'bol', 'BolC8t52539H' => 'bol', 'BolC9t56681H' => 'bol', 'BolC9t58266H' => 'bol', 'BolSC21t60294H' => 'bol', 'BraA02t05670Z' => 'bra', 'BraA03t12716Z' => 'bra', 'BraA04t17685Z' => 'bra', 'BraA05t22788Z' => 'bra', 'BraA06t24032Z' => 'bra', 'BraA06t25625Z' => 'bra', 'BraA07t27930Z' => 'bra', 'BraA08t35242Z' => 'bra', 'BraA09t38609Z' => 'bra', 'BraA10t43905Z' => 'bra', 'C02p11060' => 'bna', 'C03p42990' => 'bna', 'C03p67310' => 'bna', 'C04p56990' => 'bna', 'C04p58660' => 'bna', 'C05p09890' => 'bna', 'C05p59680' => 'bna', 'C06p19830' => 'bna', 'C06p53040' => 'bna', 'C07p15230' => 'bna', 'C08p50070' => 'bna', 'C08p50090' => 'bna', 'C09p38330' => 'bna', 'C09p53940' => 'bna', 'CAN.G1014.1' => 'can', 'CAN.G644.30' => 'can', 'CAN.G84.47' => 'can', 'CAN.G919.8' => 'can', 'CANSAT54G0113' => 'cansat', 'CANSAT54G1286' => 'cansat', 'CANSAT64G1020' => 'cansat', 'CARHR008080' => 'chi', 'CARHR008090' => 'chi', 'CARHR012130' => 'chi', 'CARHR038390' => 'chi', 'CARHR082330' => 'chi', 'CARHR120520' => 'chi', 'CARHR151470' => 'chi', 'CARHR190950' => 'chi', 'Carub.0001s0760' => 'cru', 'Carub.0001s1146' => 'cru', 'Carub.0003s0721' => 'cru', 'Carub.0004s0858' => 'cru', 'Carub.0005s1040' => 'cru', 'Carub.0006s2035' => 'cru', 'Carub.0015s0005' => 'cru', 'Ca_01607_v3' => 'car', 'Ca_01677_v3' => 'car', 'Ca_06087_v3' => 'car', 'Ca_19238_v3' => 'car', 'Ca_19373_v3' => 'car', 'Ca_21079_v3' => 'car', 'CBR_g54016' => 'cbr', 'CBR_g54018' => 'cbr', 'CBR_g54020' => 'cbr', 'Cc01_g09780' => 'ccan', 'Cc01_g11680' => 'ccan', 'Cc02_g15610' => 'ccan', 'Cc05_g04350' => 'ccan', 'Cc09_g01580' => 'ccan', 'CDE01G0795' => 'cde', 'CDE02G2024' => 'cde', 'CDE02G2260' => 'cde', 'CDE02G4561' => 'cde', 'CDE05G2733' => 'cde', 'CDE05G3422' => 'cde', 'CDE06G2003' => 'cde', 'CDE08G0576' => 'cde', 'CDE09G0048' => 'cde', 'CDE11G0805' => 'cde', 'Cfa003644' => 'cfa', 'Cfa006290' => 'cfa', 'Cfa010080' => 'cfa', 'Cfa011376' => 'cfa', 'Cfa011576' => 'cfa', 'Cfa011577' => 'cfa', 'Cfa014389' => 'cfa', 'Ciclev10006044m.g' => 'ccl', 'Ciclev10006954m.g' => 'ccl', 'Ciclev10015131m.g' => 'ccl', 'Ciclev10015580m.g' => 'ccl', 'Ciclev10028359m.g' => 'ccl', 'Ciclev10028573m.g' => 'ccl', 'CiPaw.03G159300' => 'cil', 'CiPaw.04G115100' => 'cil', 'CiPaw.09G092800' => 'cil', 'CiPaw.10G071800' => 'cil', 'CiPaw.13G105800' => 'cil', 'CiPaw.13G141000' => 'cil', 'CiPaw.14G103400' => 'cil', 'ClCG01G012700' => 'cla', 'ClCG01G012720' => 'cla', 'ClCG01G021920' => 'cla', 'ClCG02G008870' => 'cla', 'ClCG02G020840' => 'cla', 'ClCG02G021930' => 'cla', 'COL.COLO4_19302' => 'col', 'COL.COLO4_25262' => 'col', 'COL.COLO4_31788' => 'col', 'Cpa.g.c34684' => 'cpa', 'Cpa.g.c36520.1' => 'cpa', 'Cpa.g.c45626' => 'cpa', 'Cpa.g.sc121.17' => 'cpa', 'Cpa.g.sc13.22' => 'cpa', 'Cpa.g.sc87.88' => 'cpa', 'Cre06.g261800' => 'cre', 'CsaV3_1G014500' => 'csa', 'CsaV3_1G014510' => 'csa', 'CsaV3_2G034880' => 'csa', 'CsaV3_6G014760' => 'csa', 'CsaV3_6G021500' => 'csa', 'CsaV3_6G048980' => 'csa', 'CSS0002511' => 'camsi', 'CSS0007556' => 'camsi', 'CSS0008532' => 'camsi', 'CSS0009709' => 'camsi', 'CSS0010486' => 'camsi', 'CSS0016768' => 'camsi', 'CSS0023512' => 'camsi', 'CSS0025341' => 'camsi', 'CSS0027999' => 'camsi', 'CSS0028944' => 'camsi', 'CSS0032292' => 'camsi', 'CSS0032464' => 'camsi', 'CSS0037153' => 'camsi', 'CSS0039256' => 'camsi', 'CSS0048392' => 'camsi', 'CSS0050458' => 'camsi', 'DCAR_004224' => 'dca', 'DCAR_006147' => 'dca', 'DCAR_006465' => 'dca', 'DCAR_008159' => 'dca', 'DCAR_012164' => 'dca', 'DCAR_019764' => 'dca', 'Dinv05418' => 'din', 'Dinv10839' => 'din', 'Dinv12521' => 'din', 'Dinv13900' => 'din', 'Dinv29426' => 'din', 'Duzib150G0263' => 'dzi', 'Duzib168G1178' => 'dzi', 'Duzib168G1924' => 'dzi', 'Duzib170G0299' => 'dzi', 'Duzib170G0813' => 'dzi', 'Duzib235G1128' => 'dzi', 'Duzib248G1060' => 'dzi', 'ECA232G1910' => 'eca', 'ECA233G4621' => 'eca', 'ECA238G1216' => 'eca', 'ECA238G1784' => 'eca', 'ECA248G1242' => 'eca', 'EL10Ac8g20071' => 'bvu', 'EL10Ac9g21086' => 'bvu', 'EL10Ac9g22407' => 'bvu', 'EL10Ac9g22412' => 'bvu', 'Eucgr.A01119' => 'egr', 'Eucgr.E04043' => 'egr', 'Eucgr.J00428' => 'egr', 'Eucgr.J00958' => 'egr', 'FAN11G3091' => 'fan', 'FAN11G3651' => 'fan', 'FAN16G2566' => 'fan', 'FAN21G3155' => 'fan', 'FAN21G3400' => 'fan', 'FAN21G3543' => 'fan', 'FAN25G0234' => 'fan', 'FAN25G1422' => 'fan', 'FAN25G3392' => 'fan', 'FvH4_3g01940' => 'fve', 'FvH4_3g29870' => 'fve', 'FvH4_3g33680' => 'fve', 'Glyma.09G004200' => 'gma', 'Glyma.11G151288' => 'gma', 'Glyma.11G189100' => 'gma', 'Glyma.12G072500' => 'gma', 'Glyma.12G085500' => 'gma', 'Glyma.12G181800' => 'gma', 'Glyma.12G193000' => 'gma', 'Glyma.13G309300' => 'gma', 'Glyma.13G319000' => 'gma', 'Glyma.17G012600' => 'gma', 'Gohir.A06G148600' => 'ghi', 'Gohir.A07G115800' => 'ghi', 'Gohir.A08G003600' => 'ghi', 'Gohir.A09G093300' => 'ghi', 'Gohir.A09G105400' => 'ghi', 'Gohir.A09G105500' => 'ghi', 'Gohir.D06G154600' => 'ghi', 'Gohir.D07G120200' => 'ghi', 'Gohir.D08G013900' => 'ghi', 'Gohir.D09G093100' => 'ghi', 'Gohir.D09G102200' => 'ghi', 'Gohir.D09G102300' => 'ghi', 'Gorai.001G129400' => 'gra', 'Gorai.004G008200' => 'gra', 'Gorai.006G109800' => 'gra', 'Gorai.006G119500' => 'gra', 'Gorai.006G121300' => 'gra', 'Gorai.010G180700' => 'gra', 'GSVIVG01012716001' => 'vvi', 'GSVIVG01025118001' => 'vvi', 'GSVIVG01030439001' => 'vvi', 'GSVIVG01031397001' => 'vvi', 'HanXRQChr01g0004201' => 'han', 'HanXRQChr02g0054941' => 'han', 'HanXRQChr05g0141811' => 'han', 'HanXRQChr07g0197751' => 'han', 'HanXRQChr11g0346691' => 'han', 'HanXRQChr13g0396971' => 'han', 'HanXRQChr14g0432951' => 'han', 'HanXRQChr14g0452001' => 'han', 'HanXRQChr15g0496681' => 'han', 'HanXRQChr17g0557491' => 'han', 'HanXRQChr17g0557501' => 'han', 'Haze_06809' => 'cav', 'Haze_12852' => 'cav', 'Haze_15850' => 'cav', 'Haze_23446' => 'cav', 'Haze_23942' => 'cav', 'Haze_23943' => 'cav', 'Hma1.2p1_0091F.1_g046450' => 'hma', 'Hma1.2p1_0128F.1_g059910' => 'hma', 'Hma1.2p1_0249F.1_g102260' => 'hma', 'Hma1.2p1_0453F.1_g156190' => 'hma', 'Hma1.2p1_0695F.1_g204380' => 'hma', 'Hma1.2p1_0749F.1_g212650' => 'hma', 'Hma1.2p1_2156F.1_g315420' => 'hma', 'Hma1.2p1_2686F.1_g326940' => 'hma', 'HPP92_006428' => 'vpl', 'HPP92_012069' => 'vpl', 'HPP92_014129' => 'vpl', 'HPP92_014133' => 'vpl', 'HPP92_017315' => 'vpl', 'HPP92_026445' => 'vpl', 'HPP92_026446' => 'vpl', 'Hund00774' => 'sun', 'Hund07682' => 'sun', 'Hund21413' => 'sun', 'Hund23462' => 'sun', 'Hund23463' => 'sun', 'Lalb_Chr03g0027911' => 'lal', 'Lalb_Chr13g0304271' => 'lal', 'Lalb_Chr19g0137471' => 'lal', 'Lalb_Chr22g0350651' => 'lal', 'Lalb_Chr24g0395151' => 'lal', 'Lj1A1231T40' => 'lonja', 'Lj1A221T48' => 'lonja', 'Lj1C924T12' => 'lonja', 'Lj2C993G6' => 'lonja', 'Lj3g0005790' => 'lja', 'Lj3g0015432' => 'lja', 'Lj3g0017722' => 'lja', 'Lj3g0018497' => 'lja', 'Lj4g0025071' => 'lja', 'Lsat_1_v5_gn_1_129680' => 'lsa', 'Lsat_1_v5_gn_2_25321' => 'lsa', 'Lsat_1_v5_gn_2_95461' => 'lsa', 'Lsat_1_v5_gn_4_159620' => 'lsa', 'Lsat_1_v5_gn_6_41301' => 'lsa', 'Lsat_1_v5_gn_6_74660' => 'lsa', 'Lsat_1_v5_gn_7_11520' => 'lsa', 'Lsat_1_v5_gn_9_67680' => 'lsa', 'Manes.04G008300' => 'mes', 'Manes.04G008400' => 'mes', 'Manes.04G026500' => 'mes', 'Manes.10G135300' => 'mes', 'Manes.11G157300' => 'mes', 'Manes.12G074000' => 'mes', 'Manes.16G006200' => 'mes', 'Manes.17G026400' => 'mes', 'Mapoly0024s0086' => 'mpo', 'Mapoly0024s0087' => 'mpo', 'Mapoly0071s0057' => 'mpo', 'Mapoly0204s0012' => 'mpo', 'MBI04_g37681_MAGBIO' => 'mbi', 'MBI05_g17779_MAGBIO' => 'mbi', 'MBI12_g31184_MAGBIO' => 'mbi', 'MBI17_g11083_MAGBIO' => 'mbi', 'MBI18_g03883_MAGBIO' => 'mbi', 'MBI18_g28940_MAGBIO' => 'mbi', 'MCO01G690' => 'mco', 'MD03G1109900' => 'mdo', 'MD03G1134800' => 'mdo', 'MD05G1348000' => 'mdo', 'MD10G1322400' => 'mdo', 'MD11G1123300' => 'mdo', 'MD11G1157600' => 'mdo', 'Medtr2g084875' => 'mtr', 'Medtr2g088130' => 'mtr', 'Medtr4g055310' => 'mtr', 'Medtr4g061070' => 'mtr', 'Medtr4g132250' => 'mtr', 'MELO3C004795.2' => 'cme', 'MELO3C004797.2' => 'cme', 'MELO3C007396.2' => 'cme', 'MELO3C019277.2' => 'cme', 'MELO3C021449.2' => 'cme', 'MELO3C025736.2' => 'cme', 'Migut.D02175' => 'egut', 'Migut.H01573' => 'egut', 'Migut.M01327' => 'egut', 'Migut.N02513' => 'egut', 'MSTRG.14638' => 'ama', 'MSTRG.18632' => 'ama', 'MSTRG.7203' => 'ama', 'Nitab4.5_0000533g0140' => 'nta', 'Nitab4.5_0000888g0150' => 'nta', 'Nitab4.5_0001453g0040' => 'nta', 'Nitab4.5_0002827g0090' => 'nta', 'Nitab4.5_0003082g0040' => 'nta', 'Nitab4.5_0007799g0040' => 'nta', 'Nitab4.5_0008983g0010' => 'nta', 'Nitab4.5_0009017g0020' => 'nta', 'Nn1g02132' => 'nnu', 'Nn1g03492' => 'nnu', 'Nn1g03493' => 'nnu', 'Nn1g03494' => 'nnu', 'Nn1g07164' => 'nnu', 'Nn1g07291' => 'nnu', 'Nn2g10655' => 'nnu', 'Nn2g11652' => 'nnu', 'Nn2g14008' => 'nnu', 'Nn3g17476' => 'nnu', 'Nn3g17477' => 'nnu', 'Nn4g22370' => 'nnu', 'Nn4g25255' => 'nnu', 'Nn5g27755' => 'nnu', 'Nn6g34260' => 'nnu', 'Nn6g35041' => 'nnu', 'Oeu005924.1' => 'oeu', 'Oeu008383.1' => 'oeu', 'Oeu014928.1' => 'oeu', 'Oeu019889.1' => 'oeu', 'Oeu022271.1' => 'oeu', 'Oeu025271.1' => 'oeu', 'Oeu036302.1' => 'oeu', 'Oeu044100.1' => 'oeu', 'Os01g0528300' => 'osa', 'Os03g0286200' => 'osa', 'Os04g0406600' => 'osa', 'Os07g0512000' => 'osa', 'Os07g0694600' => 'osa', 'Os08g0411000' => 'osa', 'Os09g0565700' => 'osa', 'Os09g0566050' => 'osa', 'Os10g0523700' => 'osa', 'Peaxi162Scf00002g00514' => 'pax', 'Peaxi162Scf00047g01817' => 'pax', 'Peaxi162Scf00114g00001' => 'pax', 'Peaxi162Scf00147g00613' => 'pax', 'Peaxi162Scf00389g00425' => 'pax', 'PGR042G1139' => 'pgr', 'PGR042G3273' => 'pgr', 'PGR102G2180' => 'pgr', 'PGR119G0234' => 'pgr', 'PGR119G0668' => 'pgr', 'PGSC0003DMG400007122' => 'stu', 'PGSC0003DMG400016478' => 'stu', 'PGSC0003DMG400025374' => 'stu', 'PGSC0003DMG400026536' => 'stu', 'Phvul.003G079600' => 'pvu', 'Phvul.005G115600' => 'pvu', 'Phvul.005G127100' => 'pvu', 'Phvul.006G149500' => 'pvu', 'Phvul.006G149600' => 'pvu', 'Phvul.011G071800' => 'pvu', 'Phvul.011G090400' => 'pvu', 'Potri.004G013400' => 'ptr', 'Potri.004G188100' => 'ptr', 'Potri.008G195500' => 'ptr', 'Potri.009G148800' => 'ptr', 'Potri.011G004700' => 'ptr', 'Pp3c17_22810' => 'ppa', 'Pp3c18_4480' => 'ppa', 'Pp3c19_13030' => 'ppa', 'Pp3c1_33620' => 'ppa', 'Pp3c2_9380' => 'ppa', 'PRCOL_00001023' => 'pco', 'Prupe.3G216300' => 'ppe', 'Prupe.4G019500' => 'ppe', 'Prupe.6G092500' => 'ppe', 'Prupe.6G119200' => 'ppe', 'Psat0s1945g0080' => 'psa', 'Psat0s4167g0040' => 'psa', 'Psat1g185800' => 'psa', 'Psat4g006440' => 'psa', 'Psat4g006480' => 'psa', 'Psat4g168120' => 'psa', 'Psat5g255680' => 'psa', 'Psat5g261760' => 'psa', 'Psat7g222120' => 'psa', 'PSO063G7252' => 'pso', 'PSO170G4778' => 'pso', 'PSO210G2249' => 'pso', 'PSO339G2411' => 'pso', 'PSO339G2457' => 'pso', 'PSO339G2854' => 'pso', 'PSO339G4288' => 'pso', 'PSO339G4615' => 'pso', 'PSO384G2796' => 'pso', 'PSO384G2940' => 'pso', 'PSO384G4227' => 'pso', 'PSO478G1425' => 'pso', 'PSO541G3863' => 'pso', 'PSO675G0507' => 'pso', 'PSO782G0338' => 'pso', 'PSO832G0644' => 'pso', 'QL01p013664' => 'qlo', 'QL01p036598' => 'qlo', 'QL05p072984' => 'qlo', 'QL08p005768' => 'qlo', 'QL08p032743' => 'qlo', 'QL93p0073_0439' => 'qlo', 'QL93p0073_0444' => 'qlo', 'RcHm_v2.0_Chr5g0002851' => 'rch', 'RcHm_v2.0_Chr5g0055201' => 'rch', 'RcHm_v2.0_Chr5g0061191' => 'rch', 'RcHm_v2.0_Chr7g0203231' => 'rch', 'Rhsim01G0208100' => 'rsi', 'Rhsim01G0208200' => 'rsi', 'Rhsim02G0106500' => 'rsi', 'Rhsim03G0107900' => 'rsi', 'Rhsim06G0163400' => 'rsi', 'Rhsim13G0105200' => 'rsi', 'Sabra04G0006300' => 'sbr', 'Sabra04G0127000' => 'sbr', 'Sabra08G0148700' => 'sbr', 'Sabra09G0117400' => 'sbr', 'SalBow1G3326' => 'sbo', 'SalBow3G3228' => 'sbo', 'SalBow6G1634' => 'sbo', 'SalBow6G3603' => 'sbo', 'SalBow6G5266' => 'sbo', 'SalBow7G2265' => 'sbo', 'SalBow8G0850' => 'sbo', 'SalBow8G2592' => 'sbo', 'Sc05g0009240' => 'sci', 'Sc12g0002300' => 'sci', 'Sc21g0000100' => 'sci', 'Sc21g0004720' => 'sci', 'Sed0002949' => 'sed', 'Sed0004114' => 'sed', 'Sed0004306' => 'sed', 'Sed0006172' => 'sed', 'Sed0008413' => 'sed', 'Sed0013809' => 'sed', 'Sed0019556' => 'sed', 'SEGI_03570' => 'sgi', 'SEGI_07859' => 'sgi', 'SEGI_15042' => 'sgi', 'SEGI_16263' => 'sgi', 'SEGI_16552' => 'sgi', 'SEGI_24331' => 'sgi', 'SEGI_27316' => 'sgi', 'SEGI_29521' => 'sgi', 'SEGI_41342' => 'sgi', 'SGA_v2.0_scaffold27G11617' => 'sas', 'SGA_v2.0_scaffold316G48428' => 'sas', 'SGA_v2.0_scaffold49G18261' => 'sas', 'SGA_v2.0_scaffold7G03831' => 'sas', 'SGA_v2.0_scaffold93G28359' => 'sas', 'SHI02210' => 'shi', 'SHI06028' => 'shi', 'SHI06321' => 'shi', 'SMO111G0012' => 'smo', 'SMO228G0080' => 'smo', 'SMO356G0756' => 'smo', 'Solyc02g080620.3' => 'sly', 'Solyc06g074530.1' => 'sly', 'Solyc11g066890.1' => 'sly', 'Solyc11g072520.3' => 'sly', 'Sopen02g025330' => 'spe', 'Sopen06g031000' => 'spe', 'Sopen09g008240' => 'spe', 'Sopen09g025210' => 'spe', 'Sopen11g026600' => 'spe', 'Sopen11g030170' => 'spe', 'Sp1g10420' => 'spa', 'Sp3g06570' => 'spa', 'Sp4g10660' => 'spa', 'Sp5g16460' => 'spa', 'Sp6g22710' => 'spa', 'TAR365G0112' => 'tar', 'TAR369G0717' => 'tar', 'TAR374G0976' => 'tar', 'TAR623G1128' => 'tar', 'TAR626G1937' => 'tar', 'TAR627G0123' => 'tar', 'TAR628G0305' => 'tar', 'TAR636G1176' => 'tar', 'TAR636G2442' => 'tar', 'THA.LOC104800556' => 'tha', 'THA.LOC104809501' => 'tha', 'THA.LOC104815126' => 'tha', 'THA.LOC104815732' => 'tha', 'THA.LOC104823528' => 'tha', 'Thecc.02G365600' => 'tca', 'Thecc.06G222300' => 'tca', 'Thecc.09G261800' => 'tca', 'Thecc.09G291400' => 'tca', 'Thhalv10003028m.g' => 'esa', 'Thhalv10007886m.g' => 'esa', 'Thhalv10016085m.g' => 'esa', 'Thhalv10016681m.g' => 'esa', 'Thhalv10020951m.g' => 'esa', 'TPR.G15598' => 'tpr', 'TPR.G29305' => 'tpr', 'TPR.G32395' => 'tpr', 'TPR.G36998' => 'tpr', 'TPR.G4227' => 'tpr', 'TWI18G1433' => 'twi', 'TWI31G0755' => 'twi', 'TWI38G0912' => 'twi', 'TWI75G1097' => 'twi', 'TWI75G1619' => 'twi', 'TWI79G1336' => 'twi', 'unitig_0.g943' => 'ugi', 'unitig_0.g944' => 'ugi', 'unitig_22.g6646' => 'ugi', 'unitig_37.g12681' => 'ugi', 'unitig_8.g3290' => 'ugi', 'vmacro03278' => 'vma', 'vmacro12197' => 'vma', 'vmacro14478' => 'vma', 'vmacro15787' => 'vma', 'vmacro15789' => 'vma', 'vmacro15790' => 'vma', 'vmacro15806' => 'vma', 'vmacro22907' => 'vma', 'vmacro22908' => 'vma', 'vmacro22909' => 'vma', 'vmacro23108' => 'vma', 'VMungo0540G0540' => 'vmu', 'VMungo0540G2468' => 'vmu', 'VMungo1080G0390' => 'vmu', 'VMungo1080G1165' => 'vmu', 'VMungo1127G0170' => 'vmu', 'VMungo1127G2099' => 'vmu', 'VMungo1215G3013' => 'vmu', 'Zm00001eb013110' => 'zma', 'Zm00001eb084260' => 'zma', 'Zm00001eb096110' => 'zma', 'Zm00001eb217510' => 'zma', 'Zm00001eb322550' => 'zma', 'Zm00001eb390770' => 'zma', 'Zm00001eb397170' => 'zma', 'Zm00001eb404610' => 'zma', 'Zm00001eb421790' => 'zma' ) $gf_id = 'HOM05D000911' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000911' ) $data_identifier = 'HOM05D000911' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 16, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 5, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 6, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 8, 'nnu' => (int) 16, 'oeu' => (int) 8, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 5, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 16, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421790' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000911', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27780' => 'bna', 'A03p35380' => 'bna', 'A04p21160' => 'bna', 'A05p40570' => 'bna', 'A06p26900' => 'bna', 'A08p33230' => 'bna', 'A09p65960' => 'bna', 'A10p18290' => 'bna', 'Aa31LG1G12990' => 'aar', 'Aa31LG1G2980' => 'aar', 'Aa31LG4G14320' => 'aar', 'Aa31LG7G11800' => 'aar', 'Aa31sc36G50' => 'aar', 'Aa31sc36G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3721' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5459' => 'aag', 'Actinidia03028' => 'ach', 'Actinidia03753' => 'ach', 'Actinidia04187' => 'ach', 'Actinidia05509' => 'ach', 'Actinidia24180' => 'ach', 'Actinidia26906' => 'ach', 'Actinidia37097' => 'ach', 'Actinidia38249' => 'ach', 'Ah.01g003470' => 'amhyb', 'Ah.01g004580' => 'amhyb', 'Ah.01g014850' => 'amhyb', 'Ah.01g016830' => 'amhyb', 'Ah.14g088000' => 'amhyb', 'AL1G22980' => 'aly', 'AL3G18990' => 'aly', 'AL4G22440' => 'aly', 'AL4G33180' => 'aly', 'AL5G22920' => 'aly', 'AL6G33660' => 'aly', 'AL8G20720' => 'aly', 'Aqoxy1G00935' => 'aox', 'Aqoxy1G02094' => 'aox', 'Aqoxy2G01239' => 'aox', 'Aqoxy4G01870' => 'aox', 'Aqoxy7G00450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.36ZVTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71EM27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5D6C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH3WRE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3NCM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RIM768' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YB5YRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z36GDV' => 'arhy', 'AT1G08250' => 'ath', 'AT1G11790' => 'ath', 'AT2G27820' => 'ath', 'AT3G07630' => 'ath', 'AT3G44720' => 'ath', 'AT5G22630' => 'ath', 'ATR0693G304' => 'atr', 'ATR0794G109' => 'atr', 'ATR0820G120' => 'atr', 'ATR1159G064' => 'atr', 'Atru.chr10.2239' => 'acertr', 'Atru.chr3.3371' => 'acertr', 'Atru.chr6.3202' => 'acertr', 'AUR62006499' => 'cqu', 'AUR62012718' => 'cqu', 'AUR62021938' => 'cqu', 'AUR62023932' => 'cqu', 'AUR62025034' => 'cqu', 'AUR62025035' => 'cqu', 'AUR62038307' => 'cqu', 'AUR62043466' => 'cqu', 'BcaB02g10748' => 'bca', 'BcaB03g13231' => 'bca', 'BcaB03g14689' => 'bca', 'BcaB05g22716' => 'bca', 'BcaB06g28172' => 'bca', 'BcaB08g36413' => 'bca', 'BcaC01g02186' => 'bca', 'BcaC01g04272' => 'bca', 'BcaC02g08080' => 'bca', 'BcaC02g08227' => 'bca', 'BcaC03g13901' => 'bca', 'BcaC04g19593' => 'bca', 'BcaC04g20874' => 'bca', 'BcaC05g29557' => 'bca', 'BcaC06g35505' => 'bca', 'BcaC07g41954' => 'bca', 'BcaC07g41955' => 'bca', 'BcaC07g41956' => 'bca', 'BcaC07g42519' => 'bca', 'BcaC07g42520' => 'bca', 'BcaC07g42523' => 'bca', 'BcaC07g42524' => 'bca', 'BcaC07g42525' => 'bca', 'BcaC08g47480' => 'bca', 'BcaC08g47481' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00530' => 'bna', 'BolC2t07178H' => 'bol', 'BolC3t16567H' => 'bol', 'BolC4t27234H' => 'bol', 'BolC5t29728H' => 'bol', 'BolC5t34622H' => 'bol', 'BolC6t40321H' => 'bol', 'BolC7t42028H' => 'bol', 'BolC8t49125H' => 'bol', 'BolC8t52538H' => 'bol', 'BolC8t52539H' => 'bol', 'BolC9t56681H' => 'bol', 'BolC9t58266H' => 'bol', 'BolSC21t60294H' => 'bol', 'BraA02t05670Z' => 'bra', 'BraA03t12716Z' => 'bra', 'BraA04t17685Z' => 'bra', 'BraA05t22788Z' => 'bra', 'BraA06t24032Z' => 'bra', 'BraA06t25625Z' => 'bra', 'BraA07t27930Z' => 'bra', 'BraA08t35242Z' => 'bra', 'BraA09t38609Z' => 'bra', 'BraA10t43905Z' => 'bra', 'C02p11060' => 'bna', 'C03p42990' => 'bna', 'C03p67310' => 'bna', 'C04p56990' => 'bna', 'C04p58660' => 'bna', 'C05p09890' => 'bna', 'C05p59680' => 'bna', 'C06p19830' => 'bna', 'C06p53040' => 'bna', 'C07p15230' => 'bna', 'C08p50070' => 'bna', 'C08p50090' => 'bna', 'C09p38330' => 'bna', 'C09p53940' => 'bna', 'CAN.G1014.1' => 'can', 'CAN.G644.30' => 'can', 'CAN.G84.47' => 'can', 'CAN.G919.8' => 'can', 'CANSAT54G0113' => 'cansat', 'CANSAT54G1286' => 'cansat', 'CANSAT64G1020' => 'cansat', 'CARHR008080' => 'chi', 'CARHR008090' => 'chi', 'CARHR012130' => 'chi', 'CARHR038390' => 'chi', 'CARHR082330' => 'chi', 'CARHR120520' => 'chi', 'CARHR151470' => 'chi', 'CARHR190950' => 'chi', 'Carub.0001s0760' => 'cru', 'Carub.0001s1146' => 'cru', 'Carub.0003s0721' => 'cru', 'Carub.0004s0858' => 'cru', 'Carub.0005s1040' => 'cru', 'Carub.0006s2035' => 'cru', 'Carub.0015s0005' => 'cru', 'Ca_01607_v3' => 'car', 'Ca_01677_v3' => 'car', 'Ca_06087_v3' => 'car', 'Ca_19238_v3' => 'car', 'Ca_19373_v3' => 'car', 'Ca_21079_v3' => 'car', 'CBR_g54016' => 'cbr', 'CBR_g54018' => 'cbr', 'CBR_g54020' => 'cbr', 'Cc01_g09780' => 'ccan', 'Cc01_g11680' => 'ccan', 'Cc02_g15610' => 'ccan', 'Cc05_g04350' => 'ccan', 'Cc09_g01580' => 'ccan', 'CDE01G0795' => 'cde', 'CDE02G2024' => 'cde', 'CDE02G2260' => 'cde', 'CDE02G4561' => 'cde', 'CDE05G2733' => 'cde', 'CDE05G3422' => 'cde', 'CDE06G2003' => 'cde', 'CDE08G0576' => 'cde', 'CDE09G0048' => 'cde', 'CDE11G0805' => 'cde', 'Cfa003644' => 'cfa', 'Cfa006290' => 'cfa', 'Cfa010080' => 'cfa', 'Cfa011376' => 'cfa', 'Cfa011576' => 'cfa', 'Cfa011577' => 'cfa', 'Cfa014389' => 'cfa', 'Ciclev10006044m.g' => 'ccl', 'Ciclev10006954m.g' => 'ccl', 'Ciclev10015131m.g' => 'ccl', 'Ciclev10015580m.g' => 'ccl', 'Ciclev10028359m.g' => 'ccl', 'Ciclev10028573m.g' => 'ccl', 'CiPaw.03G159300' => 'cil', 'CiPaw.04G115100' => 'cil', 'CiPaw.09G092800' => 'cil', 'CiPaw.10G071800' => 'cil', 'CiPaw.13G105800' => 'cil', 'CiPaw.13G141000' => 'cil', 'CiPaw.14G103400' => 'cil', 'ClCG01G012700' => 'cla', 'ClCG01G012720' => 'cla', 'ClCG01G021920' => 'cla', 'ClCG02G008870' => 'cla', 'ClCG02G020840' => 'cla', 'ClCG02G021930' => 'cla', 'COL.COLO4_19302' => 'col', 'COL.COLO4_25262' => 'col', 'COL.COLO4_31788' => 'col', 'Cpa.g.c34684' => 'cpa', 'Cpa.g.c36520.1' => 'cpa', 'Cpa.g.c45626' => 'cpa', 'Cpa.g.sc121.17' => 'cpa', 'Cpa.g.sc13.22' => 'cpa', 'Cpa.g.sc87.88' => 'cpa', 'Cre06.g261800' => 'cre', 'CsaV3_1G014500' => 'csa', 'CsaV3_1G014510' => 'csa', 'CsaV3_2G034880' => 'csa', 'CsaV3_6G014760' => 'csa', 'CsaV3_6G021500' => 'csa', 'CsaV3_6G048980' => 'csa', 'CSS0002511' => 'camsi', 'CSS0007556' => 'camsi', 'CSS0008532' => 'camsi', 'CSS0009709' => 'camsi', 'CSS0010486' => 'camsi', 'CSS0016768' => 'camsi', 'CSS0023512' => 'camsi', 'CSS0025341' => 'camsi', 'CSS0027999' => 'camsi', 'CSS0028944' => 'camsi', 'CSS0032292' => 'camsi', 'CSS0032464' => 'camsi', 'CSS0037153' => 'camsi', 'CSS0039256' => 'camsi', 'CSS0048392' => 'camsi', 'CSS0050458' => 'camsi', 'DCAR_004224' => 'dca', 'DCAR_006147' => 'dca', 'DCAR_006465' => 'dca', 'DCAR_008159' => 'dca', 'DCAR_012164' => 'dca', 'DCAR_019764' => 'dca', 'Dinv05418' => 'din', 'Dinv10839' => 'din', 'Dinv12521' => 'din', 'Dinv13900' => 'din', 'Dinv29426' => 'din', 'Duzib150G0263' => 'dzi', 'Duzib168G1178' => 'dzi', 'Duzib168G1924' => 'dzi', 'Duzib170G0299' => 'dzi', 'Duzib170G0813' => 'dzi', 'Duzib235G1128' => 'dzi', 'Duzib248G1060' => 'dzi', 'ECA232G1910' => 'eca', 'ECA233G4621' => 'eca', 'ECA238G1216' => 'eca', 'ECA238G1784' => 'eca', 'ECA248G1242' => 'eca', 'EL10Ac8g20071' => 'bvu', 'EL10Ac9g21086' => 'bvu', 'EL10Ac9g22407' => 'bvu', 'EL10Ac9g22412' => 'bvu', 'Eucgr.A01119' => 'egr', 'Eucgr.E04043' => 'egr', 'Eucgr.J00428' => 'egr', 'Eucgr.J00958' => 'egr', 'FAN11G3091' => 'fan', 'FAN11G3651' => 'fan', 'FAN16G2566' => 'fan', 'FAN21G3155' => 'fan', 'FAN21G3400' => 'fan', 'FAN21G3543' => 'fan', 'FAN25G0234' => 'fan', 'FAN25G1422' => 'fan', 'FAN25G3392' => 'fan', 'FvH4_3g01940' => 'fve', 'FvH4_3g29870' => 'fve', 'FvH4_3g33680' => 'fve', 'Glyma.09G004200' => 'gma', 'Glyma.11G151288' => 'gma', 'Glyma.11G189100' => 'gma', 'Glyma.12G072500' => 'gma', 'Glyma.12G085500' => 'gma', 'Glyma.12G181800' => 'gma', 'Glyma.12G193000' => 'gma', 'Glyma.13G309300' => 'gma', 'Glyma.13G319000' => 'gma', 'Glyma.17G012600' => 'gma', 'Gohir.A06G148600' => 'ghi', 'Gohir.A07G115800' => 'ghi', 'Gohir.A08G003600' => 'ghi', 'Gohir.A09G093300' => 'ghi', 'Gohir.A09G105400' => 'ghi', 'Gohir.A09G105500' => 'ghi', 'Gohir.D06G154600' => 'ghi', 'Gohir.D07G120200' => 'ghi', 'Gohir.D08G013900' => 'ghi', 'Gohir.D09G093100' => 'ghi', 'Gohir.D09G102200' => 'ghi', 'Gohir.D09G102300' => 'ghi', 'Gorai.001G129400' => 'gra', 'Gorai.004G008200' => 'gra', 'Gorai.006G109800' => 'gra', 'Gorai.006G119500' => 'gra', 'Gorai.006G121300' => 'gra', 'Gorai.010G180700' => 'gra', 'GSVIVG01012716001' => 'vvi', 'GSVIVG01025118001' => 'vvi', 'GSVIVG01030439001' => 'vvi', 'GSVIVG01031397001' => 'vvi', 'HanXRQChr01g0004201' => 'han', 'HanXRQChr02g0054941' => 'han', 'HanXRQChr05g0141811' => 'han', 'HanXRQChr07g0197751' => 'han', 'HanXRQChr11g0346691' => 'han', 'HanXRQChr13g0396971' => 'han', 'HanXRQChr14g0432951' => 'han', 'HanXRQChr14g0452001' => 'han', 'HanXRQChr15g0496681' => 'han', 'HanXRQChr17g0557491' => 'han', 'HanXRQChr17g0557501' => 'han', 'Haze_06809' => 'cav', 'Haze_12852' => 'cav', 'Haze_15850' => 'cav', 'Haze_23446' => 'cav', 'Haze_23942' => 'cav', 'Haze_23943' => 'cav', 'Hma1.2p1_0091F.1_g046450' => 'hma', 'Hma1.2p1_0128F.1_g059910' => 'hma', 'Hma1.2p1_0249F.1_g102260' => 'hma', 'Hma1.2p1_0453F.1_g156190' => 'hma', 'Hma1.2p1_0695F.1_g204380' => 'hma', 'Hma1.2p1_0749F.1_g212650' => 'hma', 'Hma1.2p1_2156F.1_g315420' => 'hma', 'Hma1.2p1_2686F.1_g326940' => 'hma', 'HPP92_006428' => 'vpl', 'HPP92_012069' => 'vpl', 'HPP92_014129' => 'vpl', 'HPP92_014133' => 'vpl', 'HPP92_017315' => 'vpl', 'HPP92_026445' => 'vpl', 'HPP92_026446' => 'vpl', 'Hund00774' => 'sun', 'Hund07682' => 'sun', 'Hund21413' => 'sun', 'Hund23462' => 'sun', 'Hund23463' => 'sun', 'Lalb_Chr03g0027911' => 'lal', 'Lalb_Chr13g0304271' => 'lal', 'Lalb_Chr19g0137471' => 'lal', 'Lalb_Chr22g0350651' => 'lal', 'Lalb_Chr24g0395151' => 'lal', 'Lj1A1231T40' => 'lonja', 'Lj1A221T48' => 'lonja', 'Lj1C924T12' => 'lonja', 'Lj2C993G6' => 'lonja', 'Lj3g0005790' => 'lja', 'Lj3g0015432' => 'lja', 'Lj3g0017722' => 'lja', 'Lj3g0018497' => 'lja', 'Lj4g0025071' => 'lja', 'Lsat_1_v5_gn_1_129680' => 'lsa', 'Lsat_1_v5_gn_2_25321' => 'lsa', 'Lsat_1_v5_gn_2_95461' => 'lsa', 'Lsat_1_v5_gn_4_159620' => 'lsa', 'Lsat_1_v5_gn_6_41301' => 'lsa', 'Lsat_1_v5_gn_6_74660' => 'lsa', 'Lsat_1_v5_gn_7_11520' => 'lsa', 'Lsat_1_v5_gn_9_67680' => 'lsa', 'Manes.04G008300' => 'mes', 'Manes.04G008400' => 'mes', 'Manes.04G026500' => 'mes', 'Manes.10G135300' => 'mes', 'Manes.11G157300' => 'mes', 'Manes.12G074000' => 'mes', 'Manes.16G006200' => 'mes', 'Manes.17G026400' => 'mes', 'Mapoly0024s0086' => 'mpo', 'Mapoly0024s0087' => 'mpo', 'Mapoly0071s0057' => 'mpo', 'Mapoly0204s0012' => 'mpo', 'MBI04_g37681_MAGBIO' => 'mbi', 'MBI05_g17779_MAGBIO' => 'mbi', 'MBI12_g31184_MAGBIO' => 'mbi', 'MBI17_g11083_MAGBIO' => 'mbi', 'MBI18_g03883_MAGBIO' => 'mbi', 'MBI18_g28940_MAGBIO' => 'mbi', 'MCO01G690' => 'mco', 'MD03G1109900' => 'mdo', 'MD03G1134800' => 'mdo', 'MD05G1348000' => 'mdo', 'MD10G1322400' => 'mdo', 'MD11G1123300' => 'mdo', 'MD11G1157600' => 'mdo', 'Medtr2g084875' => 'mtr', 'Medtr2g088130' => 'mtr', 'Medtr4g055310' => 'mtr', 'Medtr4g061070' => 'mtr', 'Medtr4g132250' => 'mtr', 'MELO3C004795.2' => 'cme', 'MELO3C004797.2' => 'cme', 'MELO3C007396.2' => 'cme', 'MELO3C019277.2' => 'cme', 'MELO3C021449.2' => 'cme', 'MELO3C025736.2' => 'cme', 'Migut.D02175' => 'egut', 'Migut.H01573' => 'egut', 'Migut.M01327' => 'egut', 'Migut.N02513' => 'egut', 'MSTRG.14638' => 'ama', 'MSTRG.18632' => 'ama', 'MSTRG.7203' => 'ama', 'Nitab4.5_0000533g0140' => 'nta', 'Nitab4.5_0000888g0150' => 'nta', 'Nitab4.5_0001453g0040' => 'nta', 'Nitab4.5_0002827g0090' => 'nta', 'Nitab4.5_0003082g0040' => 'nta', 'Nitab4.5_0007799g0040' => 'nta', 'Nitab4.5_0008983g0010' => 'nta', 'Nitab4.5_0009017g0020' => 'nta', 'Nn1g02132' => 'nnu', 'Nn1g03492' => 'nnu', 'Nn1g03493' => 'nnu', 'Nn1g03494' => 'nnu', 'Nn1g07164' => 'nnu', 'Nn1g07291' => 'nnu', 'Nn2g10655' => 'nnu', 'Nn2g11652' => 'nnu', 'Nn2g14008' => 'nnu', 'Nn3g17476' => 'nnu', 'Nn3g17477' => 'nnu', 'Nn4g22370' => 'nnu', 'Nn4g25255' => 'nnu', 'Nn5g27755' => 'nnu', 'Nn6g34260' => 'nnu', 'Nn6g35041' => 'nnu', 'Oeu005924.1' => 'oeu', 'Oeu008383.1' => 'oeu', 'Oeu014928.1' => 'oeu', 'Oeu019889.1' => 'oeu', 'Oeu022271.1' => 'oeu', 'Oeu025271.1' => 'oeu', 'Oeu036302.1' => 'oeu', 'Oeu044100.1' => 'oeu', 'Os01g0528300' => 'osa', 'Os03g0286200' => 'osa', 'Os04g0406600' => 'osa', 'Os07g0512000' => 'osa', 'Os07g0694600' => 'osa', 'Os08g0411000' => 'osa', 'Os09g0565700' => 'osa', 'Os09g0566050' => 'osa', 'Os10g0523700' => 'osa', 'Peaxi162Scf00002g00514' => 'pax', 'Peaxi162Scf00047g01817' => 'pax', 'Peaxi162Scf00114g00001' => 'pax', 'Peaxi162Scf00147g00613' => 'pax', 'Peaxi162Scf00389g00425' => 'pax', 'PGR042G1139' => 'pgr', 'PGR042G3273' => 'pgr', 'PGR102G2180' => 'pgr', 'PGR119G0234' => 'pgr', 'PGR119G0668' => 'pgr', 'PGSC0003DMG400007122' => 'stu', 'PGSC0003DMG400016478' => 'stu', 'PGSC0003DMG400025374' => 'stu', 'PGSC0003DMG400026536' => 'stu', 'Phvul.003G079600' => 'pvu', 'Phvul.005G115600' => 'pvu', 'Phvul.005G127100' => 'pvu', 'Phvul.006G149500' => 'pvu', 'Phvul.006G149600' => 'pvu', 'Phvul.011G071800' => 'pvu', 'Phvul.011G090400' => 'pvu', 'Potri.004G013400' => 'ptr', 'Potri.004G188100' => 'ptr', 'Potri.008G195500' => 'ptr', 'Potri.009G148800' => 'ptr', 'Potri.011G004700' => 'ptr', 'Pp3c17_22810' => 'ppa', 'Pp3c18_4480' => 'ppa', 'Pp3c19_13030' => 'ppa', 'Pp3c1_33620' => 'ppa', 'Pp3c2_9380' => 'ppa', 'PRCOL_00001023' => 'pco', 'Prupe.3G216300' => 'ppe', 'Prupe.4G019500' => 'ppe', 'Prupe.6G092500' => 'ppe', 'Prupe.6G119200' => 'ppe', 'Psat0s1945g0080' => 'psa', 'Psat0s4167g0040' => 'psa', 'Psat1g185800' => 'psa', 'Psat4g006440' => 'psa', 'Psat4g006480' => 'psa', 'Psat4g168120' => 'psa', 'Psat5g255680' => 'psa', 'Psat5g261760' => 'psa', 'Psat7g222120' => 'psa', 'PSO063G7252' => 'pso', 'PSO170G4778' => 'pso', 'PSO210G2249' => 'pso', 'PSO339G2411' => 'pso', 'PSO339G2457' => 'pso', 'PSO339G2854' => 'pso', 'PSO339G4288' => 'pso', 'PSO339G4615' => 'pso', 'PSO384G2796' => 'pso', 'PSO384G2940' => 'pso', 'PSO384G4227' => 'pso', 'PSO478G1425' => 'pso', 'PSO541G3863' => 'pso', 'PSO675G0507' => 'pso', 'PSO782G0338' => 'pso', 'PSO832G0644' => 'pso', 'QL01p013664' => 'qlo', 'QL01p036598' => 'qlo', 'QL05p072984' => 'qlo', 'QL08p005768' => 'qlo', 'QL08p032743' => 'qlo', 'QL93p0073_0439' => 'qlo', 'QL93p0073_0444' => 'qlo', 'RcHm_v2.0_Chr5g0002851' => 'rch', 'RcHm_v2.0_Chr5g0055201' => 'rch', 'RcHm_v2.0_Chr5g0061191' => 'rch', 'RcHm_v2.0_Chr7g0203231' => 'rch', 'Rhsim01G0208100' => 'rsi', 'Rhsim01G0208200' => 'rsi', 'Rhsim02G0106500' => 'rsi', 'Rhsim03G0107900' => 'rsi', 'Rhsim06G0163400' => 'rsi', 'Rhsim13G0105200' => 'rsi', 'Sabra04G0006300' => 'sbr', 'Sabra04G0127000' => 'sbr', 'Sabra08G0148700' => 'sbr', 'Sabra09G0117400' => 'sbr', 'SalBow1G3326' => 'sbo', 'SalBow3G3228' => 'sbo', 'SalBow6G1634' => 'sbo', 'SalBow6G3603' => 'sbo', 'SalBow6G5266' => 'sbo', 'SalBow7G2265' => 'sbo', 'SalBow8G0850' => 'sbo', 'SalBow8G2592' => 'sbo', 'Sc05g0009240' => 'sci', 'Sc12g0002300' => 'sci', 'Sc21g0000100' => 'sci', 'Sc21g0004720' => 'sci', 'Sed0002949' => 'sed', 'Sed0004114' => 'sed', 'Sed0004306' => 'sed', 'Sed0006172' => 'sed', 'Sed0008413' => 'sed', 'Sed0013809' => 'sed', 'Sed0019556' => 'sed', 'SEGI_03570' => 'sgi', 'SEGI_07859' => 'sgi', 'SEGI_15042' => 'sgi', 'SEGI_16263' => 'sgi', 'SEGI_16552' => 'sgi', 'SEGI_24331' => 'sgi', 'SEGI_27316' => 'sgi', 'SEGI_29521' => 'sgi', 'SEGI_41342' => 'sgi', 'SGA_v2.0_scaffold27G11617' => 'sas', 'SGA_v2.0_scaffold316G48428' => 'sas', 'SGA_v2.0_scaffold49G18261' => 'sas', 'SGA_v2.0_scaffold7G03831' => 'sas', 'SGA_v2.0_scaffold93G28359' => 'sas', 'SHI02210' => 'shi', 'SHI06028' => 'shi', 'SHI06321' => 'shi', 'SMO111G0012' => 'smo', 'SMO228G0080' => 'smo', 'SMO356G0756' => 'smo', 'Solyc02g080620.3' => 'sly', 'Solyc06g074530.1' => 'sly', 'Solyc11g066890.1' => 'sly', 'Solyc11g072520.3' => 'sly', 'Sopen02g025330' => 'spe', 'Sopen06g031000' => 'spe', 'Sopen09g008240' => 'spe', 'Sopen09g025210' => 'spe', 'Sopen11g026600' => 'spe', 'Sopen11g030170' => 'spe', 'Sp1g10420' => 'spa', 'Sp3g06570' => 'spa', 'Sp4g10660' => 'spa', 'Sp5g16460' => 'spa', 'Sp6g22710' => 'spa', 'TAR365G0112' => 'tar', 'TAR369G0717' => 'tar', 'TAR374G0976' => 'tar', 'TAR623G1128' => 'tar', 'TAR626G1937' => 'tar', 'TAR627G0123' => 'tar', 'TAR628G0305' => 'tar', 'TAR636G1176' => 'tar', 'TAR636G2442' => 'tar', 'THA.LOC104800556' => 'tha', 'THA.LOC104809501' => 'tha', 'THA.LOC104815126' => 'tha', 'THA.LOC104815732' => 'tha', 'THA.LOC104823528' => 'tha', 'Thecc.02G365600' => 'tca', 'Thecc.06G222300' => 'tca', 'Thecc.09G261800' => 'tca', 'Thecc.09G291400' => 'tca', 'Thhalv10003028m.g' => 'esa', 'Thhalv10007886m.g' => 'esa', 'Thhalv10016085m.g' => 'esa', 'Thhalv10016681m.g' => 'esa', 'Thhalv10020951m.g' => 'esa', 'TPR.G15598' => 'tpr', 'TPR.G29305' => 'tpr', 'TPR.G32395' => 'tpr', 'TPR.G36998' => 'tpr', 'TPR.G4227' => 'tpr', 'TWI18G1433' => 'twi', 'TWI31G0755' => 'twi', 'TWI38G0912' => 'twi', 'TWI75G1097' => 'twi', 'TWI75G1619' => 'twi', 'TWI79G1336' => 'twi', 'unitig_0.g943' => 'ugi', 'unitig_0.g944' => 'ugi', 'unitig_22.g6646' => 'ugi', 'unitig_37.g12681' => 'ugi', 'unitig_8.g3290' => 'ugi', 'vmacro03278' => 'vma', 'vmacro12197' => 'vma', 'vmacro14478' => 'vma', 'vmacro15787' => 'vma', 'vmacro15789' => 'vma', 'vmacro15790' => 'vma', 'vmacro15806' => 'vma', 'vmacro22907' => 'vma', 'vmacro22908' => 'vma', 'vmacro22909' => 'vma', 'vmacro23108' => 'vma', 'VMungo0540G0540' => 'vmu', 'VMungo0540G2468' => 'vmu', 'VMungo1080G0390' => 'vmu', 'VMungo1080G1165' => 'vmu', 'VMungo1127G0170' => 'vmu', 'VMungo1127G2099' => 'vmu', 'VMungo1215G3013' => 'vmu', 'Zm00001eb013110' => 'zma', 'Zm00001eb084260' => 'zma', 'Zm00001eb096110' => 'zma', 'Zm00001eb217510' => 'zma', 'Zm00001eb322550' => 'zma', 'Zm00001eb390770' => 'zma', 'Zm00001eb397170' => 'zma', 'Zm00001eb404610' => 'zma', 'Zm00001eb421790' => 'zma' ), 'gf_id' => 'HOM05D000911', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000911' ), 'data_identifier' => 'HOM05D000911', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000911', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27780' => 'bna', 'A03p35380' => 'bna', 'A04p21160' => 'bna', 'A05p40570' => 'bna', 'A06p26900' => 'bna', 'A08p33230' => 'bna', 'A09p65960' => 'bna', 'A10p18290' => 'bna', 'Aa31LG1G12990' => 'aar', 'Aa31LG1G2980' => 'aar', 'Aa31LG4G14320' => 'aar', 'Aa31LG7G11800' => 'aar', 'Aa31sc36G50' => 'aar', 'Aa31sc36G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3721' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5459' => 'aag', 'Actinidia03028' => 'ach', 'Actinidia03753' => 'ach', 'Actinidia04187' => 'ach', 'Actinidia05509' => 'ach', 'Actinidia24180' => 'ach', 'Actinidia26906' => 'ach', 'Actinidia37097' => 'ach', 'Actinidia38249' => 'ach', 'Ah.01g003470' => 'amhyb', 'Ah.01g004580' => 'amhyb', 'Ah.01g014850' => 'amhyb', 'Ah.01g016830' => 'amhyb', 'Ah.14g088000' => 'amhyb', 'AL1G22980' => 'aly', 'AL3G18990' => 'aly', 'AL4G22440' => 'aly', 'AL4G33180' => 'aly', 'AL5G22920' => 'aly', 'AL6G33660' => 'aly', 'AL8G20720' => 'aly', 'Aqoxy1G00935' => 'aox', 'Aqoxy1G02094' => 'aox', 'Aqoxy2G01239' => 'aox', 'Aqoxy4G01870' => 'aox', 'Aqoxy7G00450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.36ZVTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71EM27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5D6C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH3WRE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3NCM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RIM768' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YB5YRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z36GDV' => 'arhy', 'AT1G08250' => 'ath', 'AT1G11790' => 'ath', 'AT2G27820' => 'ath', 'AT3G07630' => 'ath', 'AT3G44720' => 'ath', 'AT5G22630' => 'ath', 'ATR0693G304' => 'atr', 'ATR0794G109' => 'atr', 'ATR0820G120' => 'atr', 'ATR1159G064' => 'atr', 'Atru.chr10.2239' => 'acertr', 'Atru.chr3.3371' => 'acertr', 'Atru.chr6.3202' => 'acertr', 'AUR62006499' => 'cqu', 'AUR62012718' => 'cqu', 'AUR62021938' => 'cqu', 'AUR62023932' => 'cqu', 'AUR62025034' => 'cqu', 'AUR62025035' => 'cqu', 'AUR62038307' => 'cqu', 'AUR62043466' => 'cqu', 'BcaB02g10748' => 'bca', 'BcaB03g13231' => 'bca', 'BcaB03g14689' => 'bca', 'BcaB05g22716' => 'bca', 'BcaB06g28172' => 'bca', 'BcaB08g36413' => 'bca', 'BcaC01g02186' => 'bca', 'BcaC01g04272' => 'bca', 'BcaC02g08080' => 'bca', 'BcaC02g08227' => 'bca', 'BcaC03g13901' => 'bca', 'BcaC04g19593' => 'bca', 'BcaC04g20874' => 'bca', 'BcaC05g29557' => 'bca', 'BcaC06g35505' => 'bca', 'BcaC07g41954' => 'bca', 'BcaC07g41955' => 'bca', 'BcaC07g41956' => 'bca', 'BcaC07g42519' => 'bca', 'BcaC07g42520' => 'bca', 'BcaC07g42523' => 'bca', 'BcaC07g42524' => 'bca', 'BcaC07g42525' => 'bca', 'BcaC08g47480' => 'bca', 'BcaC08g47481' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00530' => 'bna', 'BolC2t07178H' => 'bol', 'BolC3t16567H' => 'bol', 'BolC4t27234H' => 'bol', 'BolC5t29728H' => 'bol', 'BolC5t34622H' => 'bol', 'BolC6t40321H' => 'bol', 'BolC7t42028H' => 'bol', 'BolC8t49125H' => 'bol', 'BolC8t52538H' => 'bol', 'BolC8t52539H' => 'bol', 'BolC9t56681H' => 'bol', 'BolC9t58266H' => 'bol', 'BolSC21t60294H' => 'bol', 'BraA02t05670Z' => 'bra', 'BraA03t12716Z' => 'bra', 'BraA04t17685Z' => 'bra', 'BraA05t22788Z' => 'bra', 'BraA06t24032Z' => 'bra', 'BraA06t25625Z' => 'bra', 'BraA07t27930Z' => 'bra', 'BraA08t35242Z' => 'bra', 'BraA09t38609Z' => 'bra', 'BraA10t43905Z' => 'bra', 'C02p11060' => 'bna', 'C03p42990' => 'bna', 'C03p67310' => 'bna', 'C04p56990' => 'bna', 'C04p58660' => 'bna', 'C05p09890' => 'bna', 'C05p59680' => 'bna', 'C06p19830' => 'bna', 'C06p53040' => 'bna', 'C07p15230' => 'bna', 'C08p50070' => 'bna', 'C08p50090' => 'bna', 'C09p38330' => 'bna', 'C09p53940' => 'bna', 'CAN.G1014.1' => 'can', 'CAN.G644.30' => 'can', 'CAN.G84.47' => 'can', 'CAN.G919.8' => 'can', 'CANSAT54G0113' => 'cansat', 'CANSAT54G1286' => 'cansat', 'CANSAT64G1020' => 'cansat', 'CARHR008080' => 'chi', 'CARHR008090' => 'chi', 'CARHR012130' => 'chi', 'CARHR038390' => 'chi', 'CARHR082330' => 'chi', 'CARHR120520' => 'chi', 'CARHR151470' => 'chi', 'CARHR190950' => 'chi', 'Carub.0001s0760' => 'cru', 'Carub.0001s1146' => 'cru', 'Carub.0003s0721' => 'cru', 'Carub.0004s0858' => 'cru', 'Carub.0005s1040' => 'cru', 'Carub.0006s2035' => 'cru', 'Carub.0015s0005' => 'cru', 'Ca_01607_v3' => 'car', 'Ca_01677_v3' => 'car', 'Ca_06087_v3' => 'car', 'Ca_19238_v3' => 'car', 'Ca_19373_v3' => 'car', 'Ca_21079_v3' => 'car', 'CBR_g54016' => 'cbr', 'CBR_g54018' => 'cbr', 'CBR_g54020' => 'cbr', 'Cc01_g09780' => 'ccan', 'Cc01_g11680' => 'ccan', 'Cc02_g15610' => 'ccan', 'Cc05_g04350' => 'ccan', 'Cc09_g01580' => 'ccan', 'CDE01G0795' => 'cde', 'CDE02G2024' => 'cde', 'CDE02G2260' => 'cde', 'CDE02G4561' => 'cde', 'CDE05G2733' => 'cde', 'CDE05G3422' => 'cde', 'CDE06G2003' => 'cde', 'CDE08G0576' => 'cde', 'CDE09G0048' => 'cde', 'CDE11G0805' => 'cde', 'Cfa003644' => 'cfa', 'Cfa006290' => 'cfa', 'Cfa010080' => 'cfa', 'Cfa011376' => 'cfa', 'Cfa011576' => 'cfa', 'Cfa011577' => 'cfa', 'Cfa014389' => 'cfa', 'Ciclev10006044m.g' => 'ccl', 'Ciclev10006954m.g' => 'ccl', 'Ciclev10015131m.g' => 'ccl', 'Ciclev10015580m.g' => 'ccl', 'Ciclev10028359m.g' => 'ccl', 'Ciclev10028573m.g' => 'ccl', 'CiPaw.03G159300' => 'cil', 'CiPaw.04G115100' => 'cil', 'CiPaw.09G092800' => 'cil', 'CiPaw.10G071800' => 'cil', 'CiPaw.13G105800' => 'cil', 'CiPaw.13G141000' => 'cil', 'CiPaw.14G103400' => 'cil', 'ClCG01G012700' => 'cla', 'ClCG01G012720' => 'cla', 'ClCG01G021920' => 'cla', 'ClCG02G008870' => 'cla', 'ClCG02G020840' => 'cla', 'ClCG02G021930' => 'cla', 'COL.COLO4_19302' => 'col', 'COL.COLO4_25262' => 'col', 'COL.COLO4_31788' => 'col', 'Cpa.g.c34684' => 'cpa', 'Cpa.g.c36520.1' => 'cpa', 'Cpa.g.c45626' => 'cpa', 'Cpa.g.sc121.17' => 'cpa', 'Cpa.g.sc13.22' => 'cpa', 'Cpa.g.sc87.88' => 'cpa', 'Cre06.g261800' => 'cre', 'CsaV3_1G014500' => 'csa', 'CsaV3_1G014510' => 'csa', 'CsaV3_2G034880' => 'csa', 'CsaV3_6G014760' => 'csa', 'CsaV3_6G021500' => 'csa', 'CsaV3_6G048980' => 'csa', 'CSS0002511' => 'camsi', 'CSS0007556' => 'camsi', 'CSS0008532' => 'camsi', 'CSS0009709' => 'camsi', 'CSS0010486' => 'camsi', 'CSS0016768' => 'camsi', 'CSS0023512' => 'camsi', 'CSS0025341' => 'camsi', 'CSS0027999' => 'camsi', 'CSS0028944' => 'camsi', 'CSS0032292' => 'camsi', 'CSS0032464' => 'camsi', 'CSS0037153' => 'camsi', 'CSS0039256' => 'camsi', 'CSS0048392' => 'camsi', 'CSS0050458' => 'camsi', 'DCAR_004224' => 'dca', 'DCAR_006147' => 'dca', 'DCAR_006465' => 'dca', 'DCAR_008159' => 'dca', 'DCAR_012164' => 'dca', 'DCAR_019764' => 'dca', 'Dinv05418' => 'din', 'Dinv10839' => 'din', 'Dinv12521' => 'din', 'Dinv13900' => 'din', 'Dinv29426' => 'din', 'Duzib150G0263' => 'dzi', 'Duzib168G1178' => 'dzi', 'Duzib168G1924' => 'dzi', 'Duzib170G0299' => 'dzi', 'Duzib170G0813' => 'dzi', 'Duzib235G1128' => 'dzi', 'Duzib248G1060' => 'dzi', 'ECA232G1910' => 'eca', 'ECA233G4621' => 'eca', 'ECA238G1216' => 'eca', 'ECA238G1784' => 'eca', 'ECA248G1242' => 'eca', 'EL10Ac8g20071' => 'bvu', 'EL10Ac9g21086' => 'bvu', 'EL10Ac9g22407' => 'bvu', 'EL10Ac9g22412' => 'bvu', 'Eucgr.A01119' => 'egr', 'Eucgr.E04043' => 'egr', 'Eucgr.J00428' => 'egr', 'Eucgr.J00958' => 'egr', 'FAN11G3091' => 'fan', 'FAN11G3651' => 'fan', 'FAN16G2566' => 'fan', 'FAN21G3155' => 'fan', 'FAN21G3400' => 'fan', 'FAN21G3543' => 'fan', 'FAN25G0234' => 'fan', 'FAN25G1422' => 'fan', 'FAN25G3392' => 'fan', 'FvH4_3g01940' => 'fve', 'FvH4_3g29870' => 'fve', 'FvH4_3g33680' => 'fve', 'Glyma.09G004200' => 'gma', 'Glyma.11G151288' => 'gma', 'Glyma.11G189100' => 'gma', 'Glyma.12G072500' => 'gma', 'Glyma.12G085500' => 'gma', 'Glyma.12G181800' => 'gma', 'Glyma.12G193000' => 'gma', 'Glyma.13G309300' => 'gma', 'Glyma.13G319000' => 'gma', 'Glyma.17G012600' => 'gma', 'Gohir.A06G148600' => 'ghi', 'Gohir.A07G115800' => 'ghi', 'Gohir.A08G003600' => 'ghi', 'Gohir.A09G093300' => 'ghi', 'Gohir.A09G105400' => 'ghi', 'Gohir.A09G105500' => 'ghi', 'Gohir.D06G154600' => 'ghi', 'Gohir.D07G120200' => 'ghi', 'Gohir.D08G013900' => 'ghi', 'Gohir.D09G093100' => 'ghi', 'Gohir.D09G102200' => 'ghi', 'Gohir.D09G102300' => 'ghi', 'Gorai.001G129400' => 'gra', 'Gorai.004G008200' => 'gra', 'Gorai.006G109800' => 'gra', 'Gorai.006G119500' => 'gra', 'Gorai.006G121300' => 'gra', 'Gorai.010G180700' => 'gra', 'GSVIVG01012716001' => 'vvi', 'GSVIVG01025118001' => 'vvi', 'GSVIVG01030439001' => 'vvi', 'GSVIVG01031397001' => 'vvi', 'HanXRQChr01g0004201' => 'han', 'HanXRQChr02g0054941' => 'han', 'HanXRQChr05g0141811' => 'han', 'HanXRQChr07g0197751' => 'han', 'HanXRQChr11g0346691' => 'han', 'HanXRQChr13g0396971' => 'han', 'HanXRQChr14g0432951' => 'han', 'HanXRQChr14g0452001' => 'han', 'HanXRQChr15g0496681' => 'han', 'HanXRQChr17g0557491' => 'han', 'HanXRQChr17g0557501' => 'han', 'Haze_06809' => 'cav', 'Haze_12852' => 'cav', 'Haze_15850' => 'cav', 'Haze_23446' => 'cav', 'Haze_23942' => 'cav', 'Haze_23943' => 'cav', 'Hma1.2p1_0091F.1_g046450' => 'hma', 'Hma1.2p1_0128F.1_g059910' => 'hma', 'Hma1.2p1_0249F.1_g102260' => 'hma', 'Hma1.2p1_0453F.1_g156190' => 'hma', 'Hma1.2p1_0695F.1_g204380' => 'hma', 'Hma1.2p1_0749F.1_g212650' => 'hma', 'Hma1.2p1_2156F.1_g315420' => 'hma', 'Hma1.2p1_2686F.1_g326940' => 'hma', 'HPP92_006428' => 'vpl', 'HPP92_012069' => 'vpl', 'HPP92_014129' => 'vpl', 'HPP92_014133' => 'vpl', 'HPP92_017315' => 'vpl', 'HPP92_026445' => 'vpl', 'HPP92_026446' => 'vpl', 'Hund00774' => 'sun', 'Hund07682' => 'sun', 'Hund21413' => 'sun', 'Hund23462' => 'sun', 'Hund23463' => 'sun', 'Lalb_Chr03g0027911' => 'lal', 'Lalb_Chr13g0304271' => 'lal', 'Lalb_Chr19g0137471' => 'lal', 'Lalb_Chr22g0350651' => 'lal', 'Lalb_Chr24g0395151' => 'lal', 'Lj1A1231T40' => 'lonja', 'Lj1A221T48' => 'lonja', 'Lj1C924T12' => 'lonja', 'Lj2C993G6' => 'lonja', 'Lj3g0005790' => 'lja', 'Lj3g0015432' => 'lja', 'Lj3g0017722' => 'lja', 'Lj3g0018497' => 'lja', 'Lj4g0025071' => 'lja', 'Lsat_1_v5_gn_1_129680' => 'lsa', 'Lsat_1_v5_gn_2_25321' => 'lsa', 'Lsat_1_v5_gn_2_95461' => 'lsa', 'Lsat_1_v5_gn_4_159620' => 'lsa', 'Lsat_1_v5_gn_6_41301' => 'lsa', 'Lsat_1_v5_gn_6_74660' => 'lsa', 'Lsat_1_v5_gn_7_11520' => 'lsa', 'Lsat_1_v5_gn_9_67680' => 'lsa', 'Manes.04G008300' => 'mes', 'Manes.04G008400' => 'mes', 'Manes.04G026500' => 'mes', 'Manes.10G135300' => 'mes', 'Manes.11G157300' => 'mes', 'Manes.12G074000' => 'mes', 'Manes.16G006200' => 'mes', 'Manes.17G026400' => 'mes', 'Mapoly0024s0086' => 'mpo', 'Mapoly0024s0087' => 'mpo', 'Mapoly0071s0057' => 'mpo', 'Mapoly0204s0012' => 'mpo', 'MBI04_g37681_MAGBIO' => 'mbi', 'MBI05_g17779_MAGBIO' => 'mbi', 'MBI12_g31184_MAGBIO' => 'mbi', 'MBI17_g11083_MAGBIO' => 'mbi', 'MBI18_g03883_MAGBIO' => 'mbi', 'MBI18_g28940_MAGBIO' => 'mbi', 'MCO01G690' => 'mco', 'MD03G1109900' => 'mdo', 'MD03G1134800' => 'mdo', 'MD05G1348000' => 'mdo', 'MD10G1322400' => 'mdo', 'MD11G1123300' => 'mdo', 'MD11G1157600' => 'mdo', 'Medtr2g084875' => 'mtr', 'Medtr2g088130' => 'mtr', 'Medtr4g055310' => 'mtr', 'Medtr4g061070' => 'mtr', 'Medtr4g132250' => 'mtr', 'MELO3C004795.2' => 'cme', 'MELO3C004797.2' => 'cme', 'MELO3C007396.2' => 'cme', 'MELO3C019277.2' => 'cme', 'MELO3C021449.2' => 'cme', 'MELO3C025736.2' => 'cme', 'Migut.D02175' => 'egut', 'Migut.H01573' => 'egut', 'Migut.M01327' => 'egut', 'Migut.N02513' => 'egut', 'MSTRG.14638' => 'ama', 'MSTRG.18632' => 'ama', 'MSTRG.7203' => 'ama', 'Nitab4.5_0000533g0140' => 'nta', 'Nitab4.5_0000888g0150' => 'nta', 'Nitab4.5_0001453g0040' => 'nta', 'Nitab4.5_0002827g0090' => 'nta', 'Nitab4.5_0003082g0040' => 'nta', 'Nitab4.5_0007799g0040' => 'nta', 'Nitab4.5_0008983g0010' => 'nta', 'Nitab4.5_0009017g0020' => 'nta', 'Nn1g02132' => 'nnu', 'Nn1g03492' => 'nnu', 'Nn1g03493' => 'nnu', 'Nn1g03494' => 'nnu', 'Nn1g07164' => 'nnu', 'Nn1g07291' => 'nnu', 'Nn2g10655' => 'nnu', 'Nn2g11652' => 'nnu', 'Nn2g14008' => 'nnu', 'Nn3g17476' => 'nnu', 'Nn3g17477' => 'nnu', 'Nn4g22370' => 'nnu', 'Nn4g25255' => 'nnu', 'Nn5g27755' => 'nnu', 'Nn6g34260' => 'nnu', 'Nn6g35041' => 'nnu', 'Oeu005924.1' => 'oeu', 'Oeu008383.1' => 'oeu', 'Oeu014928.1' => 'oeu', 'Oeu019889.1' => 'oeu', 'Oeu022271.1' => 'oeu', 'Oeu025271.1' => 'oeu', 'Oeu036302.1' => 'oeu', 'Oeu044100.1' => 'oeu', 'Os01g0528300' => 'osa', 'Os03g0286200' => 'osa', 'Os04g0406600' => 'osa', 'Os07g0512000' => 'osa', 'Os07g0694600' => 'osa', 'Os08g0411000' => 'osa', 'Os09g0565700' => 'osa', 'Os09g0566050' => 'osa', 'Os10g0523700' => 'osa', 'Peaxi162Scf00002g00514' => 'pax', 'Peaxi162Scf00047g01817' => 'pax', 'Peaxi162Scf00114g00001' => 'pax', 'Peaxi162Scf00147g00613' => 'pax', 'Peaxi162Scf00389g00425' => 'pax', 'PGR042G1139' => 'pgr', 'PGR042G3273' => 'pgr', 'PGR102G2180' => 'pgr', 'PGR119G0234' => 'pgr', 'PGR119G0668' => 'pgr', 'PGSC0003DMG400007122' => 'stu', 'PGSC0003DMG400016478' => 'stu', 'PGSC0003DMG400025374' => 'stu', 'PGSC0003DMG400026536' => 'stu', 'Phvul.003G079600' => 'pvu', 'Phvul.005G115600' => 'pvu', 'Phvul.005G127100' => 'pvu', 'Phvul.006G149500' => 'pvu', 'Phvul.006G149600' => 'pvu', 'Phvul.011G071800' => 'pvu', 'Phvul.011G090400' => 'pvu', 'Potri.004G013400' => 'ptr', 'Potri.004G188100' => 'ptr', 'Potri.008G195500' => 'ptr', 'Potri.009G148800' => 'ptr', 'Potri.011G004700' => 'ptr', 'Pp3c17_22810' => 'ppa', 'Pp3c18_4480' => 'ppa', 'Pp3c19_13030' => 'ppa', 'Pp3c1_33620' => 'ppa', 'Pp3c2_9380' => 'ppa', 'PRCOL_00001023' => 'pco', 'Prupe.3G216300' => 'ppe', 'Prupe.4G019500' => 'ppe', 'Prupe.6G092500' => 'ppe', 'Prupe.6G119200' => 'ppe', 'Psat0s1945g0080' => 'psa', 'Psat0s4167g0040' => 'psa', 'Psat1g185800' => 'psa', 'Psat4g006440' => 'psa', 'Psat4g006480' => 'psa', 'Psat4g168120' => 'psa', 'Psat5g255680' => 'psa', 'Psat5g261760' => 'psa', 'Psat7g222120' => 'psa', 'PSO063G7252' => 'pso', 'PSO170G4778' => 'pso', 'PSO210G2249' => 'pso', 'PSO339G2411' => 'pso', 'PSO339G2457' => 'pso', 'PSO339G2854' => 'pso', 'PSO339G4288' => 'pso', 'PSO339G4615' => 'pso', 'PSO384G2796' => 'pso', 'PSO384G2940' => 'pso', 'PSO384G4227' => 'pso', 'PSO478G1425' => 'pso', 'PSO541G3863' => 'pso', 'PSO675G0507' => 'pso', 'PSO782G0338' => 'pso', 'PSO832G0644' => 'pso', 'QL01p013664' => 'qlo', 'QL01p036598' => 'qlo', 'QL05p072984' => 'qlo', 'QL08p005768' => 'qlo', 'QL08p032743' => 'qlo', 'QL93p0073_0439' => 'qlo', 'QL93p0073_0444' => 'qlo', 'RcHm_v2.0_Chr5g0002851' => 'rch', 'RcHm_v2.0_Chr5g0055201' => 'rch', 'RcHm_v2.0_Chr5g0061191' => 'rch', 'RcHm_v2.0_Chr7g0203231' => 'rch', 'Rhsim01G0208100' => 'rsi', 'Rhsim01G0208200' => 'rsi', 'Rhsim02G0106500' => 'rsi', 'Rhsim03G0107900' => 'rsi', 'Rhsim06G0163400' => 'rsi', 'Rhsim13G0105200' => 'rsi', 'Sabra04G0006300' => 'sbr', 'Sabra04G0127000' => 'sbr', 'Sabra08G0148700' => 'sbr', 'Sabra09G0117400' => 'sbr', 'SalBow1G3326' => 'sbo', 'SalBow3G3228' => 'sbo', 'SalBow6G1634' => 'sbo', 'SalBow6G3603' => 'sbo', 'SalBow6G5266' => 'sbo', 'SalBow7G2265' => 'sbo', 'SalBow8G0850' => 'sbo', 'SalBow8G2592' => 'sbo', 'Sc05g0009240' => 'sci', 'Sc12g0002300' => 'sci', 'Sc21g0000100' => 'sci', 'Sc21g0004720' => 'sci', 'Sed0002949' => 'sed', 'Sed0004114' => 'sed', 'Sed0004306' => 'sed', 'Sed0006172' => 'sed', 'Sed0008413' => 'sed', 'Sed0013809' => 'sed', 'Sed0019556' => 'sed', 'SEGI_03570' => 'sgi', 'SEGI_07859' => 'sgi', 'SEGI_15042' => 'sgi', 'SEGI_16263' => 'sgi', 'SEGI_16552' => 'sgi', 'SEGI_24331' => 'sgi', 'SEGI_27316' => 'sgi', 'SEGI_29521' => 'sgi', 'SEGI_41342' => 'sgi', 'SGA_v2.0_scaffold27G11617' => 'sas', 'SGA_v2.0_scaffold316G48428' => 'sas', 'SGA_v2.0_scaffold49G18261' => 'sas', 'SGA_v2.0_scaffold7G03831' => 'sas', 'SGA_v2.0_scaffold93G28359' => 'sas', 'SHI02210' => 'shi', 'SHI06028' => 'shi', 'SHI06321' => 'shi', 'SMO111G0012' => 'smo', 'SMO228G0080' => 'smo', 'SMO356G0756' => 'smo', 'Solyc02g080620.3' => 'sly', 'Solyc06g074530.1' => 'sly', 'Solyc11g066890.1' => 'sly', 'Solyc11g072520.3' => 'sly', 'Sopen02g025330' => 'spe', 'Sopen06g031000' => 'spe', 'Sopen09g008240' => 'spe', 'Sopen09g025210' => 'spe', 'Sopen11g026600' => 'spe', 'Sopen11g030170' => 'spe', 'Sp1g10420' => 'spa', 'Sp3g06570' => 'spa', 'Sp4g10660' => 'spa', 'Sp5g16460' => 'spa', 'Sp6g22710' => 'spa', 'TAR365G0112' => 'tar', 'TAR369G0717' => 'tar', 'TAR374G0976' => 'tar', 'TAR623G1128' => 'tar', 'TAR626G1937' => 'tar', 'TAR627G0123' => 'tar', 'TAR628G0305' => 'tar', 'TAR636G1176' => 'tar', 'TAR636G2442' => 'tar', 'THA.LOC104800556' => 'tha', 'THA.LOC104809501' => 'tha', 'THA.LOC104815126' => 'tha', 'THA.LOC104815732' => 'tha', 'THA.LOC104823528' => 'tha', 'Thecc.02G365600' => 'tca', 'Thecc.06G222300' => 'tca', 'Thecc.09G261800' => 'tca', 'Thecc.09G291400' => 'tca', 'Thhalv10003028m.g' => 'esa', 'Thhalv10007886m.g' => 'esa', 'Thhalv10016085m.g' => 'esa', 'Thhalv10016681m.g' => 'esa', 'Thhalv10020951m.g' => 'esa', 'TPR.G15598' => 'tpr', 'TPR.G29305' => 'tpr', 'TPR.G32395' => 'tpr', 'TPR.G36998' => 'tpr', 'TPR.G4227' => 'tpr', 'TWI18G1433' => 'twi', 'TWI31G0755' => 'twi', 'TWI38G0912' => 'twi', 'TWI75G1097' => 'twi', 'TWI75G1619' => 'twi', 'TWI79G1336' => 'twi', 'unitig_0.g943' => 'ugi', 'unitig_0.g944' => 'ugi', 'unitig_22.g6646' => 'ugi', 'unitig_37.g12681' => 'ugi', 'unitig_8.g3290' => 'ugi', 'vmacro03278' => 'vma', 'vmacro12197' => 'vma', 'vmacro14478' => 'vma', 'vmacro15787' => 'vma', 'vmacro15789' => 'vma', 'vmacro15790' => 'vma', 'vmacro15806' => 'vma', 'vmacro22907' => 'vma', 'vmacro22908' => 'vma', 'vmacro22909' => 'vma', 'vmacro23108' => 'vma', 'VMungo0540G0540' => 'vmu', 'VMungo0540G2468' => 'vmu', 'VMungo1080G0390' => 'vmu', 'VMungo1080G1165' => 'vmu', 'VMungo1127G0170' => 'vmu', 'VMungo1127G2099' => 'vmu', 'VMungo1215G3013' => 'vmu', 'Zm00001eb013110' => 'zma', 'Zm00001eb084260' => 'zma', 'Zm00001eb096110' => 'zma', 'Zm00001eb217510' => 'zma', 'Zm00001eb322550' => 'zma', 'Zm00001eb390770' => 'zma', 'Zm00001eb397170' => 'zma', 'Zm00001eb404610' => 'zma', 'Zm00001eb421790' => 'zma' ) $gf_id = 'HOM05D000911' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000911' ) $data_identifier = 'HOM05D000911' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 16, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 5, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 6, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 8, 'nnu' => (int) 16, 'oeu' => (int) 8, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 5, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 16, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421790' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000911', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27780' => 'bna', 'A03p35380' => 'bna', 'A04p21160' => 'bna', 'A05p40570' => 'bna', 'A06p26900' => 'bna', 'A08p33230' => 'bna', 'A09p65960' => 'bna', 'A10p18290' => 'bna', 'Aa31LG1G12990' => 'aar', 'Aa31LG1G2980' => 'aar', 'Aa31LG4G14320' => 'aar', 'Aa31LG7G11800' => 'aar', 'Aa31sc36G50' => 'aar', 'Aa31sc36G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3721' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5459' => 'aag', 'Actinidia03028' => 'ach', 'Actinidia03753' => 'ach', 'Actinidia04187' => 'ach', 'Actinidia05509' => 'ach', 'Actinidia24180' => 'ach', 'Actinidia26906' => 'ach', 'Actinidia37097' => 'ach', 'Actinidia38249' => 'ach', 'Ah.01g003470' => 'amhyb', 'Ah.01g004580' => 'amhyb', 'Ah.01g014850' => 'amhyb', 'Ah.01g016830' => 'amhyb', 'Ah.14g088000' => 'amhyb', 'AL1G22980' => 'aly', 'AL3G18990' => 'aly', 'AL4G22440' => 'aly', 'AL4G33180' => 'aly', 'AL5G22920' => 'aly', 'AL6G33660' => 'aly', 'AL8G20720' => 'aly', 'Aqoxy1G00935' => 'aox', 'Aqoxy1G02094' => 'aox', 'Aqoxy2G01239' => 'aox', 'Aqoxy4G01870' => 'aox', 'Aqoxy7G00450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.36ZVTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71EM27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5D6C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH3WRE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3NCM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RIM768' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YB5YRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z36GDV' => 'arhy', 'AT1G08250' => 'ath', 'AT1G11790' => 'ath', 'AT2G27820' => 'ath', 'AT3G07630' => 'ath', 'AT3G44720' => 'ath', 'AT5G22630' => 'ath', 'ATR0693G304' => 'atr', 'ATR0794G109' => 'atr', 'ATR0820G120' => 'atr', 'ATR1159G064' => 'atr', 'Atru.chr10.2239' => 'acertr', 'Atru.chr3.3371' => 'acertr', 'Atru.chr6.3202' => 'acertr', 'AUR62006499' => 'cqu', 'AUR62012718' => 'cqu', 'AUR62021938' => 'cqu', 'AUR62023932' => 'cqu', 'AUR62025034' => 'cqu', 'AUR62025035' => 'cqu', 'AUR62038307' => 'cqu', 'AUR62043466' => 'cqu', 'BcaB02g10748' => 'bca', 'BcaB03g13231' => 'bca', 'BcaB03g14689' => 'bca', 'BcaB05g22716' => 'bca', 'BcaB06g28172' => 'bca', 'BcaB08g36413' => 'bca', 'BcaC01g02186' => 'bca', 'BcaC01g04272' => 'bca', 'BcaC02g08080' => 'bca', 'BcaC02g08227' => 'bca', 'BcaC03g13901' => 'bca', 'BcaC04g19593' => 'bca', 'BcaC04g20874' => 'bca', 'BcaC05g29557' => 'bca', 'BcaC06g35505' => 'bca', 'BcaC07g41954' => 'bca', 'BcaC07g41955' => 'bca', 'BcaC07g41956' => 'bca', 'BcaC07g42519' => 'bca', 'BcaC07g42520' => 'bca', 'BcaC07g42523' => 'bca', 'BcaC07g42524' => 'bca', 'BcaC07g42525' => 'bca', 'BcaC08g47480' => 'bca', 'BcaC08g47481' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00530' => 'bna', 'BolC2t07178H' => 'bol', 'BolC3t16567H' => 'bol', 'BolC4t27234H' => 'bol', 'BolC5t29728H' => 'bol', 'BolC5t34622H' => 'bol', 'BolC6t40321H' => 'bol', 'BolC7t42028H' => 'bol', 'BolC8t49125H' => 'bol', 'BolC8t52538H' => 'bol', 'BolC8t52539H' => 'bol', 'BolC9t56681H' => 'bol', 'BolC9t58266H' => 'bol', 'BolSC21t60294H' => 'bol', 'BraA02t05670Z' => 'bra', 'BraA03t12716Z' => 'bra', 'BraA04t17685Z' => 'bra', 'BraA05t22788Z' => 'bra', 'BraA06t24032Z' => 'bra', 'BraA06t25625Z' => 'bra', 'BraA07t27930Z' => 'bra', 'BraA08t35242Z' => 'bra', 'BraA09t38609Z' => 'bra', 'BraA10t43905Z' => 'bra', 'C02p11060' => 'bna', 'C03p42990' => 'bna', 'C03p67310' => 'bna', 'C04p56990' => 'bna', 'C04p58660' => 'bna', 'C05p09890' => 'bna', 'C05p59680' => 'bna', 'C06p19830' => 'bna', 'C06p53040' => 'bna', 'C07p15230' => 'bna', 'C08p50070' => 'bna', 'C08p50090' => 'bna', 'C09p38330' => 'bna', 'C09p53940' => 'bna', 'CAN.G1014.1' => 'can', 'CAN.G644.30' => 'can', 'CAN.G84.47' => 'can', 'CAN.G919.8' => 'can', 'CANSAT54G0113' => 'cansat', 'CANSAT54G1286' => 'cansat', 'CANSAT64G1020' => 'cansat', 'CARHR008080' => 'chi', 'CARHR008090' => 'chi', 'CARHR012130' => 'chi', 'CARHR038390' => 'chi', 'CARHR082330' => 'chi', 'CARHR120520' => 'chi', 'CARHR151470' => 'chi', 'CARHR190950' => 'chi', 'Carub.0001s0760' => 'cru', 'Carub.0001s1146' => 'cru', 'Carub.0003s0721' => 'cru', 'Carub.0004s0858' => 'cru', 'Carub.0005s1040' => 'cru', 'Carub.0006s2035' => 'cru', 'Carub.0015s0005' => 'cru', 'Ca_01607_v3' => 'car', 'Ca_01677_v3' => 'car', 'Ca_06087_v3' => 'car', 'Ca_19238_v3' => 'car', 'Ca_19373_v3' => 'car', 'Ca_21079_v3' => 'car', 'CBR_g54016' => 'cbr', 'CBR_g54018' => 'cbr', 'CBR_g54020' => 'cbr', 'Cc01_g09780' => 'ccan', 'Cc01_g11680' => 'ccan', 'Cc02_g15610' => 'ccan', 'Cc05_g04350' => 'ccan', 'Cc09_g01580' => 'ccan', 'CDE01G0795' => 'cde', 'CDE02G2024' => 'cde', 'CDE02G2260' => 'cde', 'CDE02G4561' => 'cde', 'CDE05G2733' => 'cde', 'CDE05G3422' => 'cde', 'CDE06G2003' => 'cde', 'CDE08G0576' => 'cde', 'CDE09G0048' => 'cde', 'CDE11G0805' => 'cde', 'Cfa003644' => 'cfa', 'Cfa006290' => 'cfa', 'Cfa010080' => 'cfa', 'Cfa011376' => 'cfa', 'Cfa011576' => 'cfa', 'Cfa011577' => 'cfa', 'Cfa014389' => 'cfa', 'Ciclev10006044m.g' => 'ccl', 'Ciclev10006954m.g' => 'ccl', 'Ciclev10015131m.g' => 'ccl', 'Ciclev10015580m.g' => 'ccl', 'Ciclev10028359m.g' => 'ccl', 'Ciclev10028573m.g' => 'ccl', 'CiPaw.03G159300' => 'cil', 'CiPaw.04G115100' => 'cil', 'CiPaw.09G092800' => 'cil', 'CiPaw.10G071800' => 'cil', 'CiPaw.13G105800' => 'cil', 'CiPaw.13G141000' => 'cil', 'CiPaw.14G103400' => 'cil', 'ClCG01G012700' => 'cla', 'ClCG01G012720' => 'cla', 'ClCG01G021920' => 'cla', 'ClCG02G008870' => 'cla', 'ClCG02G020840' => 'cla', 'ClCG02G021930' => 'cla', 'COL.COLO4_19302' => 'col', 'COL.COLO4_25262' => 'col', 'COL.COLO4_31788' => 'col', 'Cpa.g.c34684' => 'cpa', 'Cpa.g.c36520.1' => 'cpa', 'Cpa.g.c45626' => 'cpa', 'Cpa.g.sc121.17' => 'cpa', 'Cpa.g.sc13.22' => 'cpa', 'Cpa.g.sc87.88' => 'cpa', 'Cre06.g261800' => 'cre', 'CsaV3_1G014500' => 'csa', 'CsaV3_1G014510' => 'csa', 'CsaV3_2G034880' => 'csa', 'CsaV3_6G014760' => 'csa', 'CsaV3_6G021500' => 'csa', 'CsaV3_6G048980' => 'csa', 'CSS0002511' => 'camsi', 'CSS0007556' => 'camsi', 'CSS0008532' => 'camsi', 'CSS0009709' => 'camsi', 'CSS0010486' => 'camsi', 'CSS0016768' => 'camsi', 'CSS0023512' => 'camsi', 'CSS0025341' => 'camsi', 'CSS0027999' => 'camsi', 'CSS0028944' => 'camsi', 'CSS0032292' => 'camsi', 'CSS0032464' => 'camsi', 'CSS0037153' => 'camsi', 'CSS0039256' => 'camsi', 'CSS0048392' => 'camsi', 'CSS0050458' => 'camsi', 'DCAR_004224' => 'dca', 'DCAR_006147' => 'dca', 'DCAR_006465' => 'dca', 'DCAR_008159' => 'dca', 'DCAR_012164' => 'dca', 'DCAR_019764' => 'dca', 'Dinv05418' => 'din', 'Dinv10839' => 'din', 'Dinv12521' => 'din', 'Dinv13900' => 'din', 'Dinv29426' => 'din', 'Duzib150G0263' => 'dzi', 'Duzib168G1178' => 'dzi', 'Duzib168G1924' => 'dzi', 'Duzib170G0299' => 'dzi', 'Duzib170G0813' => 'dzi', 'Duzib235G1128' => 'dzi', 'Duzib248G1060' => 'dzi', 'ECA232G1910' => 'eca', 'ECA233G4621' => 'eca', 'ECA238G1216' => 'eca', 'ECA238G1784' => 'eca', 'ECA248G1242' => 'eca', 'EL10Ac8g20071' => 'bvu', 'EL10Ac9g21086' => 'bvu', 'EL10Ac9g22407' => 'bvu', 'EL10Ac9g22412' => 'bvu', 'Eucgr.A01119' => 'egr', 'Eucgr.E04043' => 'egr', 'Eucgr.J00428' => 'egr', 'Eucgr.J00958' => 'egr', 'FAN11G3091' => 'fan', 'FAN11G3651' => 'fan', 'FAN16G2566' => 'fan', 'FAN21G3155' => 'fan', 'FAN21G3400' => 'fan', 'FAN21G3543' => 'fan', 'FAN25G0234' => 'fan', 'FAN25G1422' => 'fan', 'FAN25G3392' => 'fan', 'FvH4_3g01940' => 'fve', 'FvH4_3g29870' => 'fve', 'FvH4_3g33680' => 'fve', 'Glyma.09G004200' => 'gma', 'Glyma.11G151288' => 'gma', 'Glyma.11G189100' => 'gma', 'Glyma.12G072500' => 'gma', 'Glyma.12G085500' => 'gma', 'Glyma.12G181800' => 'gma', 'Glyma.12G193000' => 'gma', 'Glyma.13G309300' => 'gma', 'Glyma.13G319000' => 'gma', 'Glyma.17G012600' => 'gma', 'Gohir.A06G148600' => 'ghi', 'Gohir.A07G115800' => 'ghi', 'Gohir.A08G003600' => 'ghi', 'Gohir.A09G093300' => 'ghi', 'Gohir.A09G105400' => 'ghi', 'Gohir.A09G105500' => 'ghi', 'Gohir.D06G154600' => 'ghi', 'Gohir.D07G120200' => 'ghi', 'Gohir.D08G013900' => 'ghi', 'Gohir.D09G093100' => 'ghi', 'Gohir.D09G102200' => 'ghi', 'Gohir.D09G102300' => 'ghi', 'Gorai.001G129400' => 'gra', 'Gorai.004G008200' => 'gra', 'Gorai.006G109800' => 'gra', 'Gorai.006G119500' => 'gra', 'Gorai.006G121300' => 'gra', 'Gorai.010G180700' => 'gra', 'GSVIVG01012716001' => 'vvi', 'GSVIVG01025118001' => 'vvi', 'GSVIVG01030439001' => 'vvi', 'GSVIVG01031397001' => 'vvi', 'HanXRQChr01g0004201' => 'han', 'HanXRQChr02g0054941' => 'han', 'HanXRQChr05g0141811' => 'han', 'HanXRQChr07g0197751' => 'han', 'HanXRQChr11g0346691' => 'han', 'HanXRQChr13g0396971' => 'han', 'HanXRQChr14g0432951' => 'han', 'HanXRQChr14g0452001' => 'han', 'HanXRQChr15g0496681' => 'han', 'HanXRQChr17g0557491' => 'han', 'HanXRQChr17g0557501' => 'han', 'Haze_06809' => 'cav', 'Haze_12852' => 'cav', 'Haze_15850' => 'cav', 'Haze_23446' => 'cav', 'Haze_23942' => 'cav', 'Haze_23943' => 'cav', 'Hma1.2p1_0091F.1_g046450' => 'hma', 'Hma1.2p1_0128F.1_g059910' => 'hma', 'Hma1.2p1_0249F.1_g102260' => 'hma', 'Hma1.2p1_0453F.1_g156190' => 'hma', 'Hma1.2p1_0695F.1_g204380' => 'hma', 'Hma1.2p1_0749F.1_g212650' => 'hma', 'Hma1.2p1_2156F.1_g315420' => 'hma', 'Hma1.2p1_2686F.1_g326940' => 'hma', 'HPP92_006428' => 'vpl', 'HPP92_012069' => 'vpl', 'HPP92_014129' => 'vpl', 'HPP92_014133' => 'vpl', 'HPP92_017315' => 'vpl', 'HPP92_026445' => 'vpl', 'HPP92_026446' => 'vpl', 'Hund00774' => 'sun', 'Hund07682' => 'sun', 'Hund21413' => 'sun', 'Hund23462' => 'sun', 'Hund23463' => 'sun', 'Lalb_Chr03g0027911' => 'lal', 'Lalb_Chr13g0304271' => 'lal', 'Lalb_Chr19g0137471' => 'lal', 'Lalb_Chr22g0350651' => 'lal', 'Lalb_Chr24g0395151' => 'lal', 'Lj1A1231T40' => 'lonja', 'Lj1A221T48' => 'lonja', 'Lj1C924T12' => 'lonja', 'Lj2C993G6' => 'lonja', 'Lj3g0005790' => 'lja', 'Lj3g0015432' => 'lja', 'Lj3g0017722' => 'lja', 'Lj3g0018497' => 'lja', 'Lj4g0025071' => 'lja', 'Lsat_1_v5_gn_1_129680' => 'lsa', 'Lsat_1_v5_gn_2_25321' => 'lsa', 'Lsat_1_v5_gn_2_95461' => 'lsa', 'Lsat_1_v5_gn_4_159620' => 'lsa', 'Lsat_1_v5_gn_6_41301' => 'lsa', 'Lsat_1_v5_gn_6_74660' => 'lsa', 'Lsat_1_v5_gn_7_11520' => 'lsa', 'Lsat_1_v5_gn_9_67680' => 'lsa', 'Manes.04G008300' => 'mes', 'Manes.04G008400' => 'mes', 'Manes.04G026500' => 'mes', 'Manes.10G135300' => 'mes', 'Manes.11G157300' => 'mes', 'Manes.12G074000' => 'mes', 'Manes.16G006200' => 'mes', 'Manes.17G026400' => 'mes', 'Mapoly0024s0086' => 'mpo', 'Mapoly0024s0087' => 'mpo', 'Mapoly0071s0057' => 'mpo', 'Mapoly0204s0012' => 'mpo', 'MBI04_g37681_MAGBIO' => 'mbi', 'MBI05_g17779_MAGBIO' => 'mbi', 'MBI12_g31184_MAGBIO' => 'mbi', 'MBI17_g11083_MAGBIO' => 'mbi', 'MBI18_g03883_MAGBIO' => 'mbi', 'MBI18_g28940_MAGBIO' => 'mbi', 'MCO01G690' => 'mco', 'MD03G1109900' => 'mdo', 'MD03G1134800' => 'mdo', 'MD05G1348000' => 'mdo', 'MD10G1322400' => 'mdo', 'MD11G1123300' => 'mdo', 'MD11G1157600' => 'mdo', 'Medtr2g084875' => 'mtr', 'Medtr2g088130' => 'mtr', 'Medtr4g055310' => 'mtr', 'Medtr4g061070' => 'mtr', 'Medtr4g132250' => 'mtr', 'MELO3C004795.2' => 'cme', 'MELO3C004797.2' => 'cme', 'MELO3C007396.2' => 'cme', 'MELO3C019277.2' => 'cme', 'MELO3C021449.2' => 'cme', 'MELO3C025736.2' => 'cme', 'Migut.D02175' => 'egut', 'Migut.H01573' => 'egut', 'Migut.M01327' => 'egut', 'Migut.N02513' => 'egut', 'MSTRG.14638' => 'ama', 'MSTRG.18632' => 'ama', 'MSTRG.7203' => 'ama', 'Nitab4.5_0000533g0140' => 'nta', 'Nitab4.5_0000888g0150' => 'nta', 'Nitab4.5_0001453g0040' => 'nta', 'Nitab4.5_0002827g0090' => 'nta', 'Nitab4.5_0003082g0040' => 'nta', 'Nitab4.5_0007799g0040' => 'nta', 'Nitab4.5_0008983g0010' => 'nta', 'Nitab4.5_0009017g0020' => 'nta', 'Nn1g02132' => 'nnu', 'Nn1g03492' => 'nnu', 'Nn1g03493' => 'nnu', 'Nn1g03494' => 'nnu', 'Nn1g07164' => 'nnu', 'Nn1g07291' => 'nnu', 'Nn2g10655' => 'nnu', 'Nn2g11652' => 'nnu', 'Nn2g14008' => 'nnu', 'Nn3g17476' => 'nnu', 'Nn3g17477' => 'nnu', 'Nn4g22370' => 'nnu', 'Nn4g25255' => 'nnu', 'Nn5g27755' => 'nnu', 'Nn6g34260' => 'nnu', 'Nn6g35041' => 'nnu', 'Oeu005924.1' => 'oeu', 'Oeu008383.1' => 'oeu', 'Oeu014928.1' => 'oeu', 'Oeu019889.1' => 'oeu', 'Oeu022271.1' => 'oeu', 'Oeu025271.1' => 'oeu', 'Oeu036302.1' => 'oeu', 'Oeu044100.1' => 'oeu', 'Os01g0528300' => 'osa', 'Os03g0286200' => 'osa', 'Os04g0406600' => 'osa', 'Os07g0512000' => 'osa', 'Os07g0694600' => 'osa', 'Os08g0411000' => 'osa', 'Os09g0565700' => 'osa', 'Os09g0566050' => 'osa', 'Os10g0523700' => 'osa', 'Peaxi162Scf00002g00514' => 'pax', 'Peaxi162Scf00047g01817' => 'pax', 'Peaxi162Scf00114g00001' => 'pax', 'Peaxi162Scf00147g00613' => 'pax', 'Peaxi162Scf00389g00425' => 'pax', 'PGR042G1139' => 'pgr', 'PGR042G3273' => 'pgr', 'PGR102G2180' => 'pgr', 'PGR119G0234' => 'pgr', 'PGR119G0668' => 'pgr', 'PGSC0003DMG400007122' => 'stu', 'PGSC0003DMG400016478' => 'stu', 'PGSC0003DMG400025374' => 'stu', 'PGSC0003DMG400026536' => 'stu', 'Phvul.003G079600' => 'pvu', 'Phvul.005G115600' => 'pvu', 'Phvul.005G127100' => 'pvu', 'Phvul.006G149500' => 'pvu', 'Phvul.006G149600' => 'pvu', 'Phvul.011G071800' => 'pvu', 'Phvul.011G090400' => 'pvu', 'Potri.004G013400' => 'ptr', 'Potri.004G188100' => 'ptr', 'Potri.008G195500' => 'ptr', 'Potri.009G148800' => 'ptr', 'Potri.011G004700' => 'ptr', 'Pp3c17_22810' => 'ppa', 'Pp3c18_4480' => 'ppa', 'Pp3c19_13030' => 'ppa', 'Pp3c1_33620' => 'ppa', 'Pp3c2_9380' => 'ppa', 'PRCOL_00001023' => 'pco', 'Prupe.3G216300' => 'ppe', 'Prupe.4G019500' => 'ppe', 'Prupe.6G092500' => 'ppe', 'Prupe.6G119200' => 'ppe', 'Psat0s1945g0080' => 'psa', 'Psat0s4167g0040' => 'psa', 'Psat1g185800' => 'psa', 'Psat4g006440' => 'psa', 'Psat4g006480' => 'psa', 'Psat4g168120' => 'psa', 'Psat5g255680' => 'psa', 'Psat5g261760' => 'psa', 'Psat7g222120' => 'psa', 'PSO063G7252' => 'pso', 'PSO170G4778' => 'pso', 'PSO210G2249' => 'pso', 'PSO339G2411' => 'pso', 'PSO339G2457' => 'pso', 'PSO339G2854' => 'pso', 'PSO339G4288' => 'pso', 'PSO339G4615' => 'pso', 'PSO384G2796' => 'pso', 'PSO384G2940' => 'pso', 'PSO384G4227' => 'pso', 'PSO478G1425' => 'pso', 'PSO541G3863' => 'pso', 'PSO675G0507' => 'pso', 'PSO782G0338' => 'pso', 'PSO832G0644' => 'pso', 'QL01p013664' => 'qlo', 'QL01p036598' => 'qlo', 'QL05p072984' => 'qlo', 'QL08p005768' => 'qlo', 'QL08p032743' => 'qlo', 'QL93p0073_0439' => 'qlo', 'QL93p0073_0444' => 'qlo', 'RcHm_v2.0_Chr5g0002851' => 'rch', 'RcHm_v2.0_Chr5g0055201' => 'rch', 'RcHm_v2.0_Chr5g0061191' => 'rch', 'RcHm_v2.0_Chr7g0203231' => 'rch', 'Rhsim01G0208100' => 'rsi', 'Rhsim01G0208200' => 'rsi', 'Rhsim02G0106500' => 'rsi', 'Rhsim03G0107900' => 'rsi', 'Rhsim06G0163400' => 'rsi', 'Rhsim13G0105200' => 'rsi', 'Sabra04G0006300' => 'sbr', 'Sabra04G0127000' => 'sbr', 'Sabra08G0148700' => 'sbr', 'Sabra09G0117400' => 'sbr', 'SalBow1G3326' => 'sbo', 'SalBow3G3228' => 'sbo', 'SalBow6G1634' => 'sbo', 'SalBow6G3603' => 'sbo', 'SalBow6G5266' => 'sbo', 'SalBow7G2265' => 'sbo', 'SalBow8G0850' => 'sbo', 'SalBow8G2592' => 'sbo', 'Sc05g0009240' => 'sci', 'Sc12g0002300' => 'sci', 'Sc21g0000100' => 'sci', 'Sc21g0004720' => 'sci', 'Sed0002949' => 'sed', 'Sed0004114' => 'sed', 'Sed0004306' => 'sed', 'Sed0006172' => 'sed', 'Sed0008413' => 'sed', 'Sed0013809' => 'sed', 'Sed0019556' => 'sed', 'SEGI_03570' => 'sgi', 'SEGI_07859' => 'sgi', 'SEGI_15042' => 'sgi', 'SEGI_16263' => 'sgi', 'SEGI_16552' => 'sgi', 'SEGI_24331' => 'sgi', 'SEGI_27316' => 'sgi', 'SEGI_29521' => 'sgi', 'SEGI_41342' => 'sgi', 'SGA_v2.0_scaffold27G11617' => 'sas', 'SGA_v2.0_scaffold316G48428' => 'sas', 'SGA_v2.0_scaffold49G18261' => 'sas', 'SGA_v2.0_scaffold7G03831' => 'sas', 'SGA_v2.0_scaffold93G28359' => 'sas', 'SHI02210' => 'shi', 'SHI06028' => 'shi', 'SHI06321' => 'shi', 'SMO111G0012' => 'smo', 'SMO228G0080' => 'smo', 'SMO356G0756' => 'smo', 'Solyc02g080620.3' => 'sly', 'Solyc06g074530.1' => 'sly', 'Solyc11g066890.1' => 'sly', 'Solyc11g072520.3' => 'sly', 'Sopen02g025330' => 'spe', 'Sopen06g031000' => 'spe', 'Sopen09g008240' => 'spe', 'Sopen09g025210' => 'spe', 'Sopen11g026600' => 'spe', 'Sopen11g030170' => 'spe', 'Sp1g10420' => 'spa', 'Sp3g06570' => 'spa', 'Sp4g10660' => 'spa', 'Sp5g16460' => 'spa', 'Sp6g22710' => 'spa', 'TAR365G0112' => 'tar', 'TAR369G0717' => 'tar', 'TAR374G0976' => 'tar', 'TAR623G1128' => 'tar', 'TAR626G1937' => 'tar', 'TAR627G0123' => 'tar', 'TAR628G0305' => 'tar', 'TAR636G1176' => 'tar', 'TAR636G2442' => 'tar', 'THA.LOC104800556' => 'tha', 'THA.LOC104809501' => 'tha', 'THA.LOC104815126' => 'tha', 'THA.LOC104815732' => 'tha', 'THA.LOC104823528' => 'tha', 'Thecc.02G365600' => 'tca', 'Thecc.06G222300' => 'tca', 'Thecc.09G261800' => 'tca', 'Thecc.09G291400' => 'tca', 'Thhalv10003028m.g' => 'esa', 'Thhalv10007886m.g' => 'esa', 'Thhalv10016085m.g' => 'esa', 'Thhalv10016681m.g' => 'esa', 'Thhalv10020951m.g' => 'esa', 'TPR.G15598' => 'tpr', 'TPR.G29305' => 'tpr', 'TPR.G32395' => 'tpr', 'TPR.G36998' => 'tpr', 'TPR.G4227' => 'tpr', 'TWI18G1433' => 'twi', 'TWI31G0755' => 'twi', 'TWI38G0912' => 'twi', 'TWI75G1097' => 'twi', 'TWI75G1619' => 'twi', 'TWI79G1336' => 'twi', 'unitig_0.g943' => 'ugi', 'unitig_0.g944' => 'ugi', 'unitig_22.g6646' => 'ugi', 'unitig_37.g12681' => 'ugi', 'unitig_8.g3290' => 'ugi', 'vmacro03278' => 'vma', 'vmacro12197' => 'vma', 'vmacro14478' => 'vma', 'vmacro15787' => 'vma', 'vmacro15789' => 'vma', 'vmacro15790' => 'vma', 'vmacro15806' => 'vma', 'vmacro22907' => 'vma', 'vmacro22908' => 'vma', 'vmacro22909' => 'vma', 'vmacro23108' => 'vma', 'VMungo0540G0540' => 'vmu', 'VMungo0540G2468' => 'vmu', 'VMungo1080G0390' => 'vmu', 'VMungo1080G1165' => 'vmu', 'VMungo1127G0170' => 'vmu', 'VMungo1127G2099' => 'vmu', 'VMungo1215G3013' => 'vmu', 'Zm00001eb013110' => 'zma', 'Zm00001eb084260' => 'zma', 'Zm00001eb096110' => 'zma', 'Zm00001eb217510' => 'zma', 'Zm00001eb322550' => 'zma', 'Zm00001eb390770' => 'zma', 'Zm00001eb397170' => 'zma', 'Zm00001eb404610' => 'zma', 'Zm00001eb421790' => 'zma' ), 'gf_id' => 'HOM05D000911', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000911' ), 'data_identifier' => 'HOM05D000911', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000911', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27780' => 'bna', 'A03p35380' => 'bna', 'A04p21160' => 'bna', 'A05p40570' => 'bna', 'A06p26900' => 'bna', 'A08p33230' => 'bna', 'A09p65960' => 'bna', 'A10p18290' => 'bna', 'Aa31LG1G12990' => 'aar', 'Aa31LG1G2980' => 'aar', 'Aa31LG4G14320' => 'aar', 'Aa31LG7G11800' => 'aar', 'Aa31sc36G50' => 'aar', 'Aa31sc36G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3721' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5459' => 'aag', 'Actinidia03028' => 'ach', 'Actinidia03753' => 'ach', 'Actinidia04187' => 'ach', 'Actinidia05509' => 'ach', 'Actinidia24180' => 'ach', 'Actinidia26906' => 'ach', 'Actinidia37097' => 'ach', 'Actinidia38249' => 'ach', 'Ah.01g003470' => 'amhyb', 'Ah.01g004580' => 'amhyb', 'Ah.01g014850' => 'amhyb', 'Ah.01g016830' => 'amhyb', 'Ah.14g088000' => 'amhyb', 'AL1G22980' => 'aly', 'AL3G18990' => 'aly', 'AL4G22440' => 'aly', 'AL4G33180' => 'aly', 'AL5G22920' => 'aly', 'AL6G33660' => 'aly', 'AL8G20720' => 'aly', 'Aqoxy1G00935' => 'aox', 'Aqoxy1G02094' => 'aox', 'Aqoxy2G01239' => 'aox', 'Aqoxy4G01870' => 'aox', 'Aqoxy7G00450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.36ZVTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71EM27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5D6C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH3WRE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3NCM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RIM768' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YB5YRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z36GDV' => 'arhy', 'AT1G08250' => 'ath', 'AT1G11790' => 'ath', 'AT2G27820' => 'ath', 'AT3G07630' => 'ath', 'AT3G44720' => 'ath', 'AT5G22630' => 'ath', 'ATR0693G304' => 'atr', 'ATR0794G109' => 'atr', 'ATR0820G120' => 'atr', 'ATR1159G064' => 'atr', 'Atru.chr10.2239' => 'acertr', 'Atru.chr3.3371' => 'acertr', 'Atru.chr6.3202' => 'acertr', 'AUR62006499' => 'cqu', 'AUR62012718' => 'cqu', 'AUR62021938' => 'cqu', 'AUR62023932' => 'cqu', 'AUR62025034' => 'cqu', 'AUR62025035' => 'cqu', 'AUR62038307' => 'cqu', 'AUR62043466' => 'cqu', 'BcaB02g10748' => 'bca', 'BcaB03g13231' => 'bca', 'BcaB03g14689' => 'bca', 'BcaB05g22716' => 'bca', 'BcaB06g28172' => 'bca', 'BcaB08g36413' => 'bca', 'BcaC01g02186' => 'bca', 'BcaC01g04272' => 'bca', 'BcaC02g08080' => 'bca', 'BcaC02g08227' => 'bca', 'BcaC03g13901' => 'bca', 'BcaC04g19593' => 'bca', 'BcaC04g20874' => 'bca', 'BcaC05g29557' => 'bca', 'BcaC06g35505' => 'bca', 'BcaC07g41954' => 'bca', 'BcaC07g41955' => 'bca', 'BcaC07g41956' => 'bca', 'BcaC07g42519' => 'bca', 'BcaC07g42520' => 'bca', 'BcaC07g42523' => 'bca', 'BcaC07g42524' => 'bca', 'BcaC07g42525' => 'bca', 'BcaC08g47480' => 'bca', 'BcaC08g47481' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00530' => 'bna', 'BolC2t07178H' => 'bol', 'BolC3t16567H' => 'bol', 'BolC4t27234H' => 'bol', 'BolC5t29728H' => 'bol', 'BolC5t34622H' => 'bol', 'BolC6t40321H' => 'bol', 'BolC7t42028H' => 'bol', 'BolC8t49125H' => 'bol', 'BolC8t52538H' => 'bol', 'BolC8t52539H' => 'bol', 'BolC9t56681H' => 'bol', 'BolC9t58266H' => 'bol', 'BolSC21t60294H' => 'bol', 'BraA02t05670Z' => 'bra', 'BraA03t12716Z' => 'bra', 'BraA04t17685Z' => 'bra', 'BraA05t22788Z' => 'bra', 'BraA06t24032Z' => 'bra', 'BraA06t25625Z' => 'bra', 'BraA07t27930Z' => 'bra', 'BraA08t35242Z' => 'bra', 'BraA09t38609Z' => 'bra', 'BraA10t43905Z' => 'bra', 'C02p11060' => 'bna', 'C03p42990' => 'bna', 'C03p67310' => 'bna', 'C04p56990' => 'bna', 'C04p58660' => 'bna', 'C05p09890' => 'bna', 'C05p59680' => 'bna', 'C06p19830' => 'bna', 'C06p53040' => 'bna', 'C07p15230' => 'bna', 'C08p50070' => 'bna', 'C08p50090' => 'bna', 'C09p38330' => 'bna', 'C09p53940' => 'bna', 'CAN.G1014.1' => 'can', 'CAN.G644.30' => 'can', 'CAN.G84.47' => 'can', 'CAN.G919.8' => 'can', 'CANSAT54G0113' => 'cansat', 'CANSAT54G1286' => 'cansat', 'CANSAT64G1020' => 'cansat', 'CARHR008080' => 'chi', 'CARHR008090' => 'chi', 'CARHR012130' => 'chi', 'CARHR038390' => 'chi', 'CARHR082330' => 'chi', 'CARHR120520' => 'chi', 'CARHR151470' => 'chi', 'CARHR190950' => 'chi', 'Carub.0001s0760' => 'cru', 'Carub.0001s1146' => 'cru', 'Carub.0003s0721' => 'cru', 'Carub.0004s0858' => 'cru', 'Carub.0005s1040' => 'cru', 'Carub.0006s2035' => 'cru', 'Carub.0015s0005' => 'cru', 'Ca_01607_v3' => 'car', 'Ca_01677_v3' => 'car', 'Ca_06087_v3' => 'car', 'Ca_19238_v3' => 'car', 'Ca_19373_v3' => 'car', 'Ca_21079_v3' => 'car', 'CBR_g54016' => 'cbr', 'CBR_g54018' => 'cbr', 'CBR_g54020' => 'cbr', 'Cc01_g09780' => 'ccan', 'Cc01_g11680' => 'ccan', 'Cc02_g15610' => 'ccan', 'Cc05_g04350' => 'ccan', 'Cc09_g01580' => 'ccan', 'CDE01G0795' => 'cde', 'CDE02G2024' => 'cde', 'CDE02G2260' => 'cde', 'CDE02G4561' => 'cde', 'CDE05G2733' => 'cde', 'CDE05G3422' => 'cde', 'CDE06G2003' => 'cde', 'CDE08G0576' => 'cde', 'CDE09G0048' => 'cde', 'CDE11G0805' => 'cde', 'Cfa003644' => 'cfa', 'Cfa006290' => 'cfa', 'Cfa010080' => 'cfa', 'Cfa011376' => 'cfa', 'Cfa011576' => 'cfa', 'Cfa011577' => 'cfa', 'Cfa014389' => 'cfa', 'Ciclev10006044m.g' => 'ccl', 'Ciclev10006954m.g' => 'ccl', 'Ciclev10015131m.g' => 'ccl', 'Ciclev10015580m.g' => 'ccl', 'Ciclev10028359m.g' => 'ccl', 'Ciclev10028573m.g' => 'ccl', 'CiPaw.03G159300' => 'cil', 'CiPaw.04G115100' => 'cil', 'CiPaw.09G092800' => 'cil', 'CiPaw.10G071800' => 'cil', 'CiPaw.13G105800' => 'cil', 'CiPaw.13G141000' => 'cil', 'CiPaw.14G103400' => 'cil', 'ClCG01G012700' => 'cla', 'ClCG01G012720' => 'cla', 'ClCG01G021920' => 'cla', 'ClCG02G008870' => 'cla', 'ClCG02G020840' => 'cla', 'ClCG02G021930' => 'cla', 'COL.COLO4_19302' => 'col', 'COL.COLO4_25262' => 'col', 'COL.COLO4_31788' => 'col', 'Cpa.g.c34684' => 'cpa', 'Cpa.g.c36520.1' => 'cpa', 'Cpa.g.c45626' => 'cpa', 'Cpa.g.sc121.17' => 'cpa', 'Cpa.g.sc13.22' => 'cpa', 'Cpa.g.sc87.88' => 'cpa', 'Cre06.g261800' => 'cre', 'CsaV3_1G014500' => 'csa', 'CsaV3_1G014510' => 'csa', 'CsaV3_2G034880' => 'csa', 'CsaV3_6G014760' => 'csa', 'CsaV3_6G021500' => 'csa', 'CsaV3_6G048980' => 'csa', 'CSS0002511' => 'camsi', 'CSS0007556' => 'camsi', 'CSS0008532' => 'camsi', 'CSS0009709' => 'camsi', 'CSS0010486' => 'camsi', 'CSS0016768' => 'camsi', 'CSS0023512' => 'camsi', 'CSS0025341' => 'camsi', 'CSS0027999' => 'camsi', 'CSS0028944' => 'camsi', 'CSS0032292' => 'camsi', 'CSS0032464' => 'camsi', 'CSS0037153' => 'camsi', 'CSS0039256' => 'camsi', 'CSS0048392' => 'camsi', 'CSS0050458' => 'camsi', 'DCAR_004224' => 'dca', 'DCAR_006147' => 'dca', 'DCAR_006465' => 'dca', 'DCAR_008159' => 'dca', 'DCAR_012164' => 'dca', 'DCAR_019764' => 'dca', 'Dinv05418' => 'din', 'Dinv10839' => 'din', 'Dinv12521' => 'din', 'Dinv13900' => 'din', 'Dinv29426' => 'din', 'Duzib150G0263' => 'dzi', 'Duzib168G1178' => 'dzi', 'Duzib168G1924' => 'dzi', 'Duzib170G0299' => 'dzi', 'Duzib170G0813' => 'dzi', 'Duzib235G1128' => 'dzi', 'Duzib248G1060' => 'dzi', 'ECA232G1910' => 'eca', 'ECA233G4621' => 'eca', 'ECA238G1216' => 'eca', 'ECA238G1784' => 'eca', 'ECA248G1242' => 'eca', 'EL10Ac8g20071' => 'bvu', 'EL10Ac9g21086' => 'bvu', 'EL10Ac9g22407' => 'bvu', 'EL10Ac9g22412' => 'bvu', 'Eucgr.A01119' => 'egr', 'Eucgr.E04043' => 'egr', 'Eucgr.J00428' => 'egr', 'Eucgr.J00958' => 'egr', 'FAN11G3091' => 'fan', 'FAN11G3651' => 'fan', 'FAN16G2566' => 'fan', 'FAN21G3155' => 'fan', 'FAN21G3400' => 'fan', 'FAN21G3543' => 'fan', 'FAN25G0234' => 'fan', 'FAN25G1422' => 'fan', 'FAN25G3392' => 'fan', 'FvH4_3g01940' => 'fve', 'FvH4_3g29870' => 'fve', 'FvH4_3g33680' => 'fve', 'Glyma.09G004200' => 'gma', 'Glyma.11G151288' => 'gma', 'Glyma.11G189100' => 'gma', 'Glyma.12G072500' => 'gma', 'Glyma.12G085500' => 'gma', 'Glyma.12G181800' => 'gma', 'Glyma.12G193000' => 'gma', 'Glyma.13G309300' => 'gma', 'Glyma.13G319000' => 'gma', 'Glyma.17G012600' => 'gma', 'Gohir.A06G148600' => 'ghi', 'Gohir.A07G115800' => 'ghi', 'Gohir.A08G003600' => 'ghi', 'Gohir.A09G093300' => 'ghi', 'Gohir.A09G105400' => 'ghi', 'Gohir.A09G105500' => 'ghi', 'Gohir.D06G154600' => 'ghi', 'Gohir.D07G120200' => 'ghi', 'Gohir.D08G013900' => 'ghi', 'Gohir.D09G093100' => 'ghi', 'Gohir.D09G102200' => 'ghi', 'Gohir.D09G102300' => 'ghi', 'Gorai.001G129400' => 'gra', 'Gorai.004G008200' => 'gra', 'Gorai.006G109800' => 'gra', 'Gorai.006G119500' => 'gra', 'Gorai.006G121300' => 'gra', 'Gorai.010G180700' => 'gra', 'GSVIVG01012716001' => 'vvi', 'GSVIVG01025118001' => 'vvi', 'GSVIVG01030439001' => 'vvi', 'GSVIVG01031397001' => 'vvi', 'HanXRQChr01g0004201' => 'han', 'HanXRQChr02g0054941' => 'han', 'HanXRQChr05g0141811' => 'han', 'HanXRQChr07g0197751' => 'han', 'HanXRQChr11g0346691' => 'han', 'HanXRQChr13g0396971' => 'han', 'HanXRQChr14g0432951' => 'han', 'HanXRQChr14g0452001' => 'han', 'HanXRQChr15g0496681' => 'han', 'HanXRQChr17g0557491' => 'han', 'HanXRQChr17g0557501' => 'han', 'Haze_06809' => 'cav', 'Haze_12852' => 'cav', 'Haze_15850' => 'cav', 'Haze_23446' => 'cav', 'Haze_23942' => 'cav', 'Haze_23943' => 'cav', 'Hma1.2p1_0091F.1_g046450' => 'hma', 'Hma1.2p1_0128F.1_g059910' => 'hma', 'Hma1.2p1_0249F.1_g102260' => 'hma', 'Hma1.2p1_0453F.1_g156190' => 'hma', 'Hma1.2p1_0695F.1_g204380' => 'hma', 'Hma1.2p1_0749F.1_g212650' => 'hma', 'Hma1.2p1_2156F.1_g315420' => 'hma', 'Hma1.2p1_2686F.1_g326940' => 'hma', 'HPP92_006428' => 'vpl', 'HPP92_012069' => 'vpl', 'HPP92_014129' => 'vpl', 'HPP92_014133' => 'vpl', 'HPP92_017315' => 'vpl', 'HPP92_026445' => 'vpl', 'HPP92_026446' => 'vpl', 'Hund00774' => 'sun', 'Hund07682' => 'sun', 'Hund21413' => 'sun', 'Hund23462' => 'sun', 'Hund23463' => 'sun', 'Lalb_Chr03g0027911' => 'lal', 'Lalb_Chr13g0304271' => 'lal', 'Lalb_Chr19g0137471' => 'lal', 'Lalb_Chr22g0350651' => 'lal', 'Lalb_Chr24g0395151' => 'lal', 'Lj1A1231T40' => 'lonja', 'Lj1A221T48' => 'lonja', 'Lj1C924T12' => 'lonja', 'Lj2C993G6' => 'lonja', 'Lj3g0005790' => 'lja', 'Lj3g0015432' => 'lja', 'Lj3g0017722' => 'lja', 'Lj3g0018497' => 'lja', 'Lj4g0025071' => 'lja', 'Lsat_1_v5_gn_1_129680' => 'lsa', 'Lsat_1_v5_gn_2_25321' => 'lsa', 'Lsat_1_v5_gn_2_95461' => 'lsa', 'Lsat_1_v5_gn_4_159620' => 'lsa', 'Lsat_1_v5_gn_6_41301' => 'lsa', 'Lsat_1_v5_gn_6_74660' => 'lsa', 'Lsat_1_v5_gn_7_11520' => 'lsa', 'Lsat_1_v5_gn_9_67680' => 'lsa', 'Manes.04G008300' => 'mes', 'Manes.04G008400' => 'mes', 'Manes.04G026500' => 'mes', 'Manes.10G135300' => 'mes', 'Manes.11G157300' => 'mes', 'Manes.12G074000' => 'mes', 'Manes.16G006200' => 'mes', 'Manes.17G026400' => 'mes', 'Mapoly0024s0086' => 'mpo', 'Mapoly0024s0087' => 'mpo', 'Mapoly0071s0057' => 'mpo', 'Mapoly0204s0012' => 'mpo', 'MBI04_g37681_MAGBIO' => 'mbi', 'MBI05_g17779_MAGBIO' => 'mbi', 'MBI12_g31184_MAGBIO' => 'mbi', 'MBI17_g11083_MAGBIO' => 'mbi', 'MBI18_g03883_MAGBIO' => 'mbi', 'MBI18_g28940_MAGBIO' => 'mbi', 'MCO01G690' => 'mco', 'MD03G1109900' => 'mdo', 'MD03G1134800' => 'mdo', 'MD05G1348000' => 'mdo', 'MD10G1322400' => 'mdo', 'MD11G1123300' => 'mdo', 'MD11G1157600' => 'mdo', 'Medtr2g084875' => 'mtr', 'Medtr2g088130' => 'mtr', 'Medtr4g055310' => 'mtr', 'Medtr4g061070' => 'mtr', 'Medtr4g132250' => 'mtr', 'MELO3C004795.2' => 'cme', 'MELO3C004797.2' => 'cme', 'MELO3C007396.2' => 'cme', 'MELO3C019277.2' => 'cme', 'MELO3C021449.2' => 'cme', 'MELO3C025736.2' => 'cme', 'Migut.D02175' => 'egut', 'Migut.H01573' => 'egut', 'Migut.M01327' => 'egut', 'Migut.N02513' => 'egut', 'MSTRG.14638' => 'ama', 'MSTRG.18632' => 'ama', 'MSTRG.7203' => 'ama', 'Nitab4.5_0000533g0140' => 'nta', 'Nitab4.5_0000888g0150' => 'nta', 'Nitab4.5_0001453g0040' => 'nta', 'Nitab4.5_0002827g0090' => 'nta', 'Nitab4.5_0003082g0040' => 'nta', 'Nitab4.5_0007799g0040' => 'nta', 'Nitab4.5_0008983g0010' => 'nta', 'Nitab4.5_0009017g0020' => 'nta', 'Nn1g02132' => 'nnu', 'Nn1g03492' => 'nnu', 'Nn1g03493' => 'nnu', 'Nn1g03494' => 'nnu', 'Nn1g07164' => 'nnu', 'Nn1g07291' => 'nnu', 'Nn2g10655' => 'nnu', 'Nn2g11652' => 'nnu', 'Nn2g14008' => 'nnu', 'Nn3g17476' => 'nnu', 'Nn3g17477' => 'nnu', 'Nn4g22370' => 'nnu', 'Nn4g25255' => 'nnu', 'Nn5g27755' => 'nnu', 'Nn6g34260' => 'nnu', 'Nn6g35041' => 'nnu', 'Oeu005924.1' => 'oeu', 'Oeu008383.1' => 'oeu', 'Oeu014928.1' => 'oeu', 'Oeu019889.1' => 'oeu', 'Oeu022271.1' => 'oeu', 'Oeu025271.1' => 'oeu', 'Oeu036302.1' => 'oeu', 'Oeu044100.1' => 'oeu', 'Os01g0528300' => 'osa', 'Os03g0286200' => 'osa', 'Os04g0406600' => 'osa', 'Os07g0512000' => 'osa', 'Os07g0694600' => 'osa', 'Os08g0411000' => 'osa', 'Os09g0565700' => 'osa', 'Os09g0566050' => 'osa', 'Os10g0523700' => 'osa', 'Peaxi162Scf00002g00514' => 'pax', 'Peaxi162Scf00047g01817' => 'pax', 'Peaxi162Scf00114g00001' => 'pax', 'Peaxi162Scf00147g00613' => 'pax', 'Peaxi162Scf00389g00425' => 'pax', 'PGR042G1139' => 'pgr', 'PGR042G3273' => 'pgr', 'PGR102G2180' => 'pgr', 'PGR119G0234' => 'pgr', 'PGR119G0668' => 'pgr', 'PGSC0003DMG400007122' => 'stu', 'PGSC0003DMG400016478' => 'stu', 'PGSC0003DMG400025374' => 'stu', 'PGSC0003DMG400026536' => 'stu', 'Phvul.003G079600' => 'pvu', 'Phvul.005G115600' => 'pvu', 'Phvul.005G127100' => 'pvu', 'Phvul.006G149500' => 'pvu', 'Phvul.006G149600' => 'pvu', 'Phvul.011G071800' => 'pvu', 'Phvul.011G090400' => 'pvu', 'Potri.004G013400' => 'ptr', 'Potri.004G188100' => 'ptr', 'Potri.008G195500' => 'ptr', 'Potri.009G148800' => 'ptr', 'Potri.011G004700' => 'ptr', 'Pp3c17_22810' => 'ppa', 'Pp3c18_4480' => 'ppa', 'Pp3c19_13030' => 'ppa', 'Pp3c1_33620' => 'ppa', 'Pp3c2_9380' => 'ppa', 'PRCOL_00001023' => 'pco', 'Prupe.3G216300' => 'ppe', 'Prupe.4G019500' => 'ppe', 'Prupe.6G092500' => 'ppe', 'Prupe.6G119200' => 'ppe', 'Psat0s1945g0080' => 'psa', 'Psat0s4167g0040' => 'psa', 'Psat1g185800' => 'psa', 'Psat4g006440' => 'psa', 'Psat4g006480' => 'psa', 'Psat4g168120' => 'psa', 'Psat5g255680' => 'psa', 'Psat5g261760' => 'psa', 'Psat7g222120' => 'psa', 'PSO063G7252' => 'pso', 'PSO170G4778' => 'pso', 'PSO210G2249' => 'pso', 'PSO339G2411' => 'pso', 'PSO339G2457' => 'pso', 'PSO339G2854' => 'pso', 'PSO339G4288' => 'pso', 'PSO339G4615' => 'pso', 'PSO384G2796' => 'pso', 'PSO384G2940' => 'pso', 'PSO384G4227' => 'pso', 'PSO478G1425' => 'pso', 'PSO541G3863' => 'pso', 'PSO675G0507' => 'pso', 'PSO782G0338' => 'pso', 'PSO832G0644' => 'pso', 'QL01p013664' => 'qlo', 'QL01p036598' => 'qlo', 'QL05p072984' => 'qlo', 'QL08p005768' => 'qlo', 'QL08p032743' => 'qlo', 'QL93p0073_0439' => 'qlo', 'QL93p0073_0444' => 'qlo', 'RcHm_v2.0_Chr5g0002851' => 'rch', 'RcHm_v2.0_Chr5g0055201' => 'rch', 'RcHm_v2.0_Chr5g0061191' => 'rch', 'RcHm_v2.0_Chr7g0203231' => 'rch', 'Rhsim01G0208100' => 'rsi', 'Rhsim01G0208200' => 'rsi', 'Rhsim02G0106500' => 'rsi', 'Rhsim03G0107900' => 'rsi', 'Rhsim06G0163400' => 'rsi', 'Rhsim13G0105200' => 'rsi', 'Sabra04G0006300' => 'sbr', 'Sabra04G0127000' => 'sbr', 'Sabra08G0148700' => 'sbr', 'Sabra09G0117400' => 'sbr', 'SalBow1G3326' => 'sbo', 'SalBow3G3228' => 'sbo', 'SalBow6G1634' => 'sbo', 'SalBow6G3603' => 'sbo', 'SalBow6G5266' => 'sbo', 'SalBow7G2265' => 'sbo', 'SalBow8G0850' => 'sbo', 'SalBow8G2592' => 'sbo', 'Sc05g0009240' => 'sci', 'Sc12g0002300' => 'sci', 'Sc21g0000100' => 'sci', 'Sc21g0004720' => 'sci', 'Sed0002949' => 'sed', 'Sed0004114' => 'sed', 'Sed0004306' => 'sed', 'Sed0006172' => 'sed', 'Sed0008413' => 'sed', 'Sed0013809' => 'sed', 'Sed0019556' => 'sed', 'SEGI_03570' => 'sgi', 'SEGI_07859' => 'sgi', 'SEGI_15042' => 'sgi', 'SEGI_16263' => 'sgi', 'SEGI_16552' => 'sgi', 'SEGI_24331' => 'sgi', 'SEGI_27316' => 'sgi', 'SEGI_29521' => 'sgi', 'SEGI_41342' => 'sgi', 'SGA_v2.0_scaffold27G11617' => 'sas', 'SGA_v2.0_scaffold316G48428' => 'sas', 'SGA_v2.0_scaffold49G18261' => 'sas', 'SGA_v2.0_scaffold7G03831' => 'sas', 'SGA_v2.0_scaffold93G28359' => 'sas', 'SHI02210' => 'shi', 'SHI06028' => 'shi', 'SHI06321' => 'shi', 'SMO111G0012' => 'smo', 'SMO228G0080' => 'smo', 'SMO356G0756' => 'smo', 'Solyc02g080620.3' => 'sly', 'Solyc06g074530.1' => 'sly', 'Solyc11g066890.1' => 'sly', 'Solyc11g072520.3' => 'sly', 'Sopen02g025330' => 'spe', 'Sopen06g031000' => 'spe', 'Sopen09g008240' => 'spe', 'Sopen09g025210' => 'spe', 'Sopen11g026600' => 'spe', 'Sopen11g030170' => 'spe', 'Sp1g10420' => 'spa', 'Sp3g06570' => 'spa', 'Sp4g10660' => 'spa', 'Sp5g16460' => 'spa', 'Sp6g22710' => 'spa', 'TAR365G0112' => 'tar', 'TAR369G0717' => 'tar', 'TAR374G0976' => 'tar', 'TAR623G1128' => 'tar', 'TAR626G1937' => 'tar', 'TAR627G0123' => 'tar', 'TAR628G0305' => 'tar', 'TAR636G1176' => 'tar', 'TAR636G2442' => 'tar', 'THA.LOC104800556' => 'tha', 'THA.LOC104809501' => 'tha', 'THA.LOC104815126' => 'tha', 'THA.LOC104815732' => 'tha', 'THA.LOC104823528' => 'tha', 'Thecc.02G365600' => 'tca', 'Thecc.06G222300' => 'tca', 'Thecc.09G261800' => 'tca', 'Thecc.09G291400' => 'tca', 'Thhalv10003028m.g' => 'esa', 'Thhalv10007886m.g' => 'esa', 'Thhalv10016085m.g' => 'esa', 'Thhalv10016681m.g' => 'esa', 'Thhalv10020951m.g' => 'esa', 'TPR.G15598' => 'tpr', 'TPR.G29305' => 'tpr', 'TPR.G32395' => 'tpr', 'TPR.G36998' => 'tpr', 'TPR.G4227' => 'tpr', 'TWI18G1433' => 'twi', 'TWI31G0755' => 'twi', 'TWI38G0912' => 'twi', 'TWI75G1097' => 'twi', 'TWI75G1619' => 'twi', 'TWI79G1336' => 'twi', 'unitig_0.g943' => 'ugi', 'unitig_0.g944' => 'ugi', 'unitig_22.g6646' => 'ugi', 'unitig_37.g12681' => 'ugi', 'unitig_8.g3290' => 'ugi', 'vmacro03278' => 'vma', 'vmacro12197' => 'vma', 'vmacro14478' => 'vma', 'vmacro15787' => 'vma', 'vmacro15789' => 'vma', 'vmacro15790' => 'vma', 'vmacro15806' => 'vma', 'vmacro22907' => 'vma', 'vmacro22908' => 'vma', 'vmacro22909' => 'vma', 'vmacro23108' => 'vma', 'VMungo0540G0540' => 'vmu', 'VMungo0540G2468' => 'vmu', 'VMungo1080G0390' => 'vmu', 'VMungo1080G1165' => 'vmu', 'VMungo1127G0170' => 'vmu', 'VMungo1127G2099' => 'vmu', 'VMungo1215G3013' => 'vmu', 'Zm00001eb013110' => 'zma', 'Zm00001eb084260' => 'zma', 'Zm00001eb096110' => 'zma', 'Zm00001eb217510' => 'zma', 'Zm00001eb322550' => 'zma', 'Zm00001eb390770' => 'zma', 'Zm00001eb397170' => 'zma', 'Zm00001eb404610' => 'zma', 'Zm00001eb421790' => 'zma' ) $gf_id = 'HOM05D000911' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000911' ) $data_identifier = 'HOM05D000911' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 16, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 5, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 6, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 8, 'nnu' => (int) 16, 'oeu' => (int) 8, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 5, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 16, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421790' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000911', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27780' => 'bna', 'A03p35380' => 'bna', 'A04p21160' => 'bna', 'A05p40570' => 'bna', 'A06p26900' => 'bna', 'A08p33230' => 'bna', 'A09p65960' => 'bna', 'A10p18290' => 'bna', 'Aa31LG1G12990' => 'aar', 'Aa31LG1G2980' => 'aar', 'Aa31LG4G14320' => 'aar', 'Aa31LG7G11800' => 'aar', 'Aa31sc36G50' => 'aar', 'Aa31sc36G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3721' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5459' => 'aag', 'Actinidia03028' => 'ach', 'Actinidia03753' => 'ach', 'Actinidia04187' => 'ach', 'Actinidia05509' => 'ach', 'Actinidia24180' => 'ach', 'Actinidia26906' => 'ach', 'Actinidia37097' => 'ach', 'Actinidia38249' => 'ach', 'Ah.01g003470' => 'amhyb', 'Ah.01g004580' => 'amhyb', 'Ah.01g014850' => 'amhyb', 'Ah.01g016830' => 'amhyb', 'Ah.14g088000' => 'amhyb', 'AL1G22980' => 'aly', 'AL3G18990' => 'aly', 'AL4G22440' => 'aly', 'AL4G33180' => 'aly', 'AL5G22920' => 'aly', 'AL6G33660' => 'aly', 'AL8G20720' => 'aly', 'Aqoxy1G00935' => 'aox', 'Aqoxy1G02094' => 'aox', 'Aqoxy2G01239' => 'aox', 'Aqoxy4G01870' => 'aox', 'Aqoxy7G00450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.36ZVTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71EM27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5D6C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH3WRE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3NCM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RIM768' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YB5YRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z36GDV' => 'arhy', 'AT1G08250' => 'ath', 'AT1G11790' => 'ath', 'AT2G27820' => 'ath', 'AT3G07630' => 'ath', 'AT3G44720' => 'ath', 'AT5G22630' => 'ath', 'ATR0693G304' => 'atr', 'ATR0794G109' => 'atr', 'ATR0820G120' => 'atr', 'ATR1159G064' => 'atr', 'Atru.chr10.2239' => 'acertr', 'Atru.chr3.3371' => 'acertr', 'Atru.chr6.3202' => 'acertr', 'AUR62006499' => 'cqu', 'AUR62012718' => 'cqu', 'AUR62021938' => 'cqu', 'AUR62023932' => 'cqu', 'AUR62025034' => 'cqu', 'AUR62025035' => 'cqu', 'AUR62038307' => 'cqu', 'AUR62043466' => 'cqu', 'BcaB02g10748' => 'bca', 'BcaB03g13231' => 'bca', 'BcaB03g14689' => 'bca', 'BcaB05g22716' => 'bca', 'BcaB06g28172' => 'bca', 'BcaB08g36413' => 'bca', 'BcaC01g02186' => 'bca', 'BcaC01g04272' => 'bca', 'BcaC02g08080' => 'bca', 'BcaC02g08227' => 'bca', 'BcaC03g13901' => 'bca', 'BcaC04g19593' => 'bca', 'BcaC04g20874' => 'bca', 'BcaC05g29557' => 'bca', 'BcaC06g35505' => 'bca', 'BcaC07g41954' => 'bca', 'BcaC07g41955' => 'bca', 'BcaC07g41956' => 'bca', 'BcaC07g42519' => 'bca', 'BcaC07g42520' => 'bca', 'BcaC07g42523' => 'bca', 'BcaC07g42524' => 'bca', 'BcaC07g42525' => 'bca', 'BcaC08g47480' => 'bca', 'BcaC08g47481' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00530' => 'bna', 'BolC2t07178H' => 'bol', 'BolC3t16567H' => 'bol', 'BolC4t27234H' => 'bol', 'BolC5t29728H' => 'bol', 'BolC5t34622H' => 'bol', 'BolC6t40321H' => 'bol', 'BolC7t42028H' => 'bol', 'BolC8t49125H' => 'bol', 'BolC8t52538H' => 'bol', 'BolC8t52539H' => 'bol', 'BolC9t56681H' => 'bol', 'BolC9t58266H' => 'bol', 'BolSC21t60294H' => 'bol', 'BraA02t05670Z' => 'bra', 'BraA03t12716Z' => 'bra', 'BraA04t17685Z' => 'bra', 'BraA05t22788Z' => 'bra', 'BraA06t24032Z' => 'bra', 'BraA06t25625Z' => 'bra', 'BraA07t27930Z' => 'bra', 'BraA08t35242Z' => 'bra', 'BraA09t38609Z' => 'bra', 'BraA10t43905Z' => 'bra', 'C02p11060' => 'bna', 'C03p42990' => 'bna', 'C03p67310' => 'bna', 'C04p56990' => 'bna', 'C04p58660' => 'bna', 'C05p09890' => 'bna', 'C05p59680' => 'bna', 'C06p19830' => 'bna', 'C06p53040' => 'bna', 'C07p15230' => 'bna', 'C08p50070' => 'bna', 'C08p50090' => 'bna', 'C09p38330' => 'bna', 'C09p53940' => 'bna', 'CAN.G1014.1' => 'can', 'CAN.G644.30' => 'can', 'CAN.G84.47' => 'can', 'CAN.G919.8' => 'can', 'CANSAT54G0113' => 'cansat', 'CANSAT54G1286' => 'cansat', 'CANSAT64G1020' => 'cansat', 'CARHR008080' => 'chi', 'CARHR008090' => 'chi', 'CARHR012130' => 'chi', 'CARHR038390' => 'chi', 'CARHR082330' => 'chi', 'CARHR120520' => 'chi', 'CARHR151470' => 'chi', 'CARHR190950' => 'chi', 'Carub.0001s0760' => 'cru', 'Carub.0001s1146' => 'cru', 'Carub.0003s0721' => 'cru', 'Carub.0004s0858' => 'cru', 'Carub.0005s1040' => 'cru', 'Carub.0006s2035' => 'cru', 'Carub.0015s0005' => 'cru', 'Ca_01607_v3' => 'car', 'Ca_01677_v3' => 'car', 'Ca_06087_v3' => 'car', 'Ca_19238_v3' => 'car', 'Ca_19373_v3' => 'car', 'Ca_21079_v3' => 'car', 'CBR_g54016' => 'cbr', 'CBR_g54018' => 'cbr', 'CBR_g54020' => 'cbr', 'Cc01_g09780' => 'ccan', 'Cc01_g11680' => 'ccan', 'Cc02_g15610' => 'ccan', 'Cc05_g04350' => 'ccan', 'Cc09_g01580' => 'ccan', 'CDE01G0795' => 'cde', 'CDE02G2024' => 'cde', 'CDE02G2260' => 'cde', 'CDE02G4561' => 'cde', 'CDE05G2733' => 'cde', 'CDE05G3422' => 'cde', 'CDE06G2003' => 'cde', 'CDE08G0576' => 'cde', 'CDE09G0048' => 'cde', 'CDE11G0805' => 'cde', 'Cfa003644' => 'cfa', 'Cfa006290' => 'cfa', 'Cfa010080' => 'cfa', 'Cfa011376' => 'cfa', 'Cfa011576' => 'cfa', 'Cfa011577' => 'cfa', 'Cfa014389' => 'cfa', 'Ciclev10006044m.g' => 'ccl', 'Ciclev10006954m.g' => 'ccl', 'Ciclev10015131m.g' => 'ccl', 'Ciclev10015580m.g' => 'ccl', 'Ciclev10028359m.g' => 'ccl', 'Ciclev10028573m.g' => 'ccl', 'CiPaw.03G159300' => 'cil', 'CiPaw.04G115100' => 'cil', 'CiPaw.09G092800' => 'cil', 'CiPaw.10G071800' => 'cil', 'CiPaw.13G105800' => 'cil', 'CiPaw.13G141000' => 'cil', 'CiPaw.14G103400' => 'cil', 'ClCG01G012700' => 'cla', 'ClCG01G012720' => 'cla', 'ClCG01G021920' => 'cla', 'ClCG02G008870' => 'cla', 'ClCG02G020840' => 'cla', 'ClCG02G021930' => 'cla', 'COL.COLO4_19302' => 'col', 'COL.COLO4_25262' => 'col', 'COL.COLO4_31788' => 'col', 'Cpa.g.c34684' => 'cpa', 'Cpa.g.c36520.1' => 'cpa', 'Cpa.g.c45626' => 'cpa', 'Cpa.g.sc121.17' => 'cpa', 'Cpa.g.sc13.22' => 'cpa', 'Cpa.g.sc87.88' => 'cpa', 'Cre06.g261800' => 'cre', 'CsaV3_1G014500' => 'csa', 'CsaV3_1G014510' => 'csa', 'CsaV3_2G034880' => 'csa', 'CsaV3_6G014760' => 'csa', 'CsaV3_6G021500' => 'csa', 'CsaV3_6G048980' => 'csa', 'CSS0002511' => 'camsi', 'CSS0007556' => 'camsi', 'CSS0008532' => 'camsi', 'CSS0009709' => 'camsi', 'CSS0010486' => 'camsi', 'CSS0016768' => 'camsi', 'CSS0023512' => 'camsi', 'CSS0025341' => 'camsi', 'CSS0027999' => 'camsi', 'CSS0028944' => 'camsi', 'CSS0032292' => 'camsi', 'CSS0032464' => 'camsi', 'CSS0037153' => 'camsi', 'CSS0039256' => 'camsi', 'CSS0048392' => 'camsi', 'CSS0050458' => 'camsi', 'DCAR_004224' => 'dca', 'DCAR_006147' => 'dca', 'DCAR_006465' => 'dca', 'DCAR_008159' => 'dca', 'DCAR_012164' => 'dca', 'DCAR_019764' => 'dca', 'Dinv05418' => 'din', 'Dinv10839' => 'din', 'Dinv12521' => 'din', 'Dinv13900' => 'din', 'Dinv29426' => 'din', 'Duzib150G0263' => 'dzi', 'Duzib168G1178' => 'dzi', 'Duzib168G1924' => 'dzi', 'Duzib170G0299' => 'dzi', 'Duzib170G0813' => 'dzi', 'Duzib235G1128' => 'dzi', 'Duzib248G1060' => 'dzi', 'ECA232G1910' => 'eca', 'ECA233G4621' => 'eca', 'ECA238G1216' => 'eca', 'ECA238G1784' => 'eca', 'ECA248G1242' => 'eca', 'EL10Ac8g20071' => 'bvu', 'EL10Ac9g21086' => 'bvu', 'EL10Ac9g22407' => 'bvu', 'EL10Ac9g22412' => 'bvu', 'Eucgr.A01119' => 'egr', 'Eucgr.E04043' => 'egr', 'Eucgr.J00428' => 'egr', 'Eucgr.J00958' => 'egr', 'FAN11G3091' => 'fan', 'FAN11G3651' => 'fan', 'FAN16G2566' => 'fan', 'FAN21G3155' => 'fan', 'FAN21G3400' => 'fan', 'FAN21G3543' => 'fan', 'FAN25G0234' => 'fan', 'FAN25G1422' => 'fan', 'FAN25G3392' => 'fan', 'FvH4_3g01940' => 'fve', 'FvH4_3g29870' => 'fve', 'FvH4_3g33680' => 'fve', 'Glyma.09G004200' => 'gma', 'Glyma.11G151288' => 'gma', 'Glyma.11G189100' => 'gma', 'Glyma.12G072500' => 'gma', 'Glyma.12G085500' => 'gma', 'Glyma.12G181800' => 'gma', 'Glyma.12G193000' => 'gma', 'Glyma.13G309300' => 'gma', 'Glyma.13G319000' => 'gma', 'Glyma.17G012600' => 'gma', 'Gohir.A06G148600' => 'ghi', 'Gohir.A07G115800' => 'ghi', 'Gohir.A08G003600' => 'ghi', 'Gohir.A09G093300' => 'ghi', 'Gohir.A09G105400' => 'ghi', 'Gohir.A09G105500' => 'ghi', 'Gohir.D06G154600' => 'ghi', 'Gohir.D07G120200' => 'ghi', 'Gohir.D08G013900' => 'ghi', 'Gohir.D09G093100' => 'ghi', 'Gohir.D09G102200' => 'ghi', 'Gohir.D09G102300' => 'ghi', 'Gorai.001G129400' => 'gra', 'Gorai.004G008200' => 'gra', 'Gorai.006G109800' => 'gra', 'Gorai.006G119500' => 'gra', 'Gorai.006G121300' => 'gra', 'Gorai.010G180700' => 'gra', 'GSVIVG01012716001' => 'vvi', 'GSVIVG01025118001' => 'vvi', 'GSVIVG01030439001' => 'vvi', 'GSVIVG01031397001' => 'vvi', 'HanXRQChr01g0004201' => 'han', 'HanXRQChr02g0054941' => 'han', 'HanXRQChr05g0141811' => 'han', 'HanXRQChr07g0197751' => 'han', 'HanXRQChr11g0346691' => 'han', 'HanXRQChr13g0396971' => 'han', 'HanXRQChr14g0432951' => 'han', 'HanXRQChr14g0452001' => 'han', 'HanXRQChr15g0496681' => 'han', 'HanXRQChr17g0557491' => 'han', 'HanXRQChr17g0557501' => 'han', 'Haze_06809' => 'cav', 'Haze_12852' => 'cav', 'Haze_15850' => 'cav', 'Haze_23446' => 'cav', 'Haze_23942' => 'cav', 'Haze_23943' => 'cav', 'Hma1.2p1_0091F.1_g046450' => 'hma', 'Hma1.2p1_0128F.1_g059910' => 'hma', 'Hma1.2p1_0249F.1_g102260' => 'hma', 'Hma1.2p1_0453F.1_g156190' => 'hma', 'Hma1.2p1_0695F.1_g204380' => 'hma', 'Hma1.2p1_0749F.1_g212650' => 'hma', 'Hma1.2p1_2156F.1_g315420' => 'hma', 'Hma1.2p1_2686F.1_g326940' => 'hma', 'HPP92_006428' => 'vpl', 'HPP92_012069' => 'vpl', 'HPP92_014129' => 'vpl', 'HPP92_014133' => 'vpl', 'HPP92_017315' => 'vpl', 'HPP92_026445' => 'vpl', 'HPP92_026446' => 'vpl', 'Hund00774' => 'sun', 'Hund07682' => 'sun', 'Hund21413' => 'sun', 'Hund23462' => 'sun', 'Hund23463' => 'sun', 'Lalb_Chr03g0027911' => 'lal', 'Lalb_Chr13g0304271' => 'lal', 'Lalb_Chr19g0137471' => 'lal', 'Lalb_Chr22g0350651' => 'lal', 'Lalb_Chr24g0395151' => 'lal', 'Lj1A1231T40' => 'lonja', 'Lj1A221T48' => 'lonja', 'Lj1C924T12' => 'lonja', 'Lj2C993G6' => 'lonja', 'Lj3g0005790' => 'lja', 'Lj3g0015432' => 'lja', 'Lj3g0017722' => 'lja', 'Lj3g0018497' => 'lja', 'Lj4g0025071' => 'lja', 'Lsat_1_v5_gn_1_129680' => 'lsa', 'Lsat_1_v5_gn_2_25321' => 'lsa', 'Lsat_1_v5_gn_2_95461' => 'lsa', 'Lsat_1_v5_gn_4_159620' => 'lsa', 'Lsat_1_v5_gn_6_41301' => 'lsa', 'Lsat_1_v5_gn_6_74660' => 'lsa', 'Lsat_1_v5_gn_7_11520' => 'lsa', 'Lsat_1_v5_gn_9_67680' => 'lsa', 'Manes.04G008300' => 'mes', 'Manes.04G008400' => 'mes', 'Manes.04G026500' => 'mes', 'Manes.10G135300' => 'mes', 'Manes.11G157300' => 'mes', 'Manes.12G074000' => 'mes', 'Manes.16G006200' => 'mes', 'Manes.17G026400' => 'mes', 'Mapoly0024s0086' => 'mpo', 'Mapoly0024s0087' => 'mpo', 'Mapoly0071s0057' => 'mpo', 'Mapoly0204s0012' => 'mpo', 'MBI04_g37681_MAGBIO' => 'mbi', 'MBI05_g17779_MAGBIO' => 'mbi', 'MBI12_g31184_MAGBIO' => 'mbi', 'MBI17_g11083_MAGBIO' => 'mbi', 'MBI18_g03883_MAGBIO' => 'mbi', 'MBI18_g28940_MAGBIO' => 'mbi', 'MCO01G690' => 'mco', 'MD03G1109900' => 'mdo', 'MD03G1134800' => 'mdo', 'MD05G1348000' => 'mdo', 'MD10G1322400' => 'mdo', 'MD11G1123300' => 'mdo', 'MD11G1157600' => 'mdo', 'Medtr2g084875' => 'mtr', 'Medtr2g088130' => 'mtr', 'Medtr4g055310' => 'mtr', 'Medtr4g061070' => 'mtr', 'Medtr4g132250' => 'mtr', 'MELO3C004795.2' => 'cme', 'MELO3C004797.2' => 'cme', 'MELO3C007396.2' => 'cme', 'MELO3C019277.2' => 'cme', 'MELO3C021449.2' => 'cme', 'MELO3C025736.2' => 'cme', 'Migut.D02175' => 'egut', 'Migut.H01573' => 'egut', 'Migut.M01327' => 'egut', 'Migut.N02513' => 'egut', 'MSTRG.14638' => 'ama', 'MSTRG.18632' => 'ama', 'MSTRG.7203' => 'ama', 'Nitab4.5_0000533g0140' => 'nta', 'Nitab4.5_0000888g0150' => 'nta', 'Nitab4.5_0001453g0040' => 'nta', 'Nitab4.5_0002827g0090' => 'nta', 'Nitab4.5_0003082g0040' => 'nta', 'Nitab4.5_0007799g0040' => 'nta', 'Nitab4.5_0008983g0010' => 'nta', 'Nitab4.5_0009017g0020' => 'nta', 'Nn1g02132' => 'nnu', 'Nn1g03492' => 'nnu', 'Nn1g03493' => 'nnu', 'Nn1g03494' => 'nnu', 'Nn1g07164' => 'nnu', 'Nn1g07291' => 'nnu', 'Nn2g10655' => 'nnu', 'Nn2g11652' => 'nnu', 'Nn2g14008' => 'nnu', 'Nn3g17476' => 'nnu', 'Nn3g17477' => 'nnu', 'Nn4g22370' => 'nnu', 'Nn4g25255' => 'nnu', 'Nn5g27755' => 'nnu', 'Nn6g34260' => 'nnu', 'Nn6g35041' => 'nnu', 'Oeu005924.1' => 'oeu', 'Oeu008383.1' => 'oeu', 'Oeu014928.1' => 'oeu', 'Oeu019889.1' => 'oeu', 'Oeu022271.1' => 'oeu', 'Oeu025271.1' => 'oeu', 'Oeu036302.1' => 'oeu', 'Oeu044100.1' => 'oeu', 'Os01g0528300' => 'osa', 'Os03g0286200' => 'osa', 'Os04g0406600' => 'osa', 'Os07g0512000' => 'osa', 'Os07g0694600' => 'osa', 'Os08g0411000' => 'osa', 'Os09g0565700' => 'osa', 'Os09g0566050' => 'osa', 'Os10g0523700' => 'osa', 'Peaxi162Scf00002g00514' => 'pax', 'Peaxi162Scf00047g01817' => 'pax', 'Peaxi162Scf00114g00001' => 'pax', 'Peaxi162Scf00147g00613' => 'pax', 'Peaxi162Scf00389g00425' => 'pax', 'PGR042G1139' => 'pgr', 'PGR042G3273' => 'pgr', 'PGR102G2180' => 'pgr', 'PGR119G0234' => 'pgr', 'PGR119G0668' => 'pgr', 'PGSC0003DMG400007122' => 'stu', 'PGSC0003DMG400016478' => 'stu', 'PGSC0003DMG400025374' => 'stu', 'PGSC0003DMG400026536' => 'stu', 'Phvul.003G079600' => 'pvu', 'Phvul.005G115600' => 'pvu', 'Phvul.005G127100' => 'pvu', 'Phvul.006G149500' => 'pvu', 'Phvul.006G149600' => 'pvu', 'Phvul.011G071800' => 'pvu', 'Phvul.011G090400' => 'pvu', 'Potri.004G013400' => 'ptr', 'Potri.004G188100' => 'ptr', 'Potri.008G195500' => 'ptr', 'Potri.009G148800' => 'ptr', 'Potri.011G004700' => 'ptr', 'Pp3c17_22810' => 'ppa', 'Pp3c18_4480' => 'ppa', 'Pp3c19_13030' => 'ppa', 'Pp3c1_33620' => 'ppa', 'Pp3c2_9380' => 'ppa', 'PRCOL_00001023' => 'pco', 'Prupe.3G216300' => 'ppe', 'Prupe.4G019500' => 'ppe', 'Prupe.6G092500' => 'ppe', 'Prupe.6G119200' => 'ppe', 'Psat0s1945g0080' => 'psa', 'Psat0s4167g0040' => 'psa', 'Psat1g185800' => 'psa', 'Psat4g006440' => 'psa', 'Psat4g006480' => 'psa', 'Psat4g168120' => 'psa', 'Psat5g255680' => 'psa', 'Psat5g261760' => 'psa', 'Psat7g222120' => 'psa', 'PSO063G7252' => 'pso', 'PSO170G4778' => 'pso', 'PSO210G2249' => 'pso', 'PSO339G2411' => 'pso', 'PSO339G2457' => 'pso', 'PSO339G2854' => 'pso', 'PSO339G4288' => 'pso', 'PSO339G4615' => 'pso', 'PSO384G2796' => 'pso', 'PSO384G2940' => 'pso', 'PSO384G4227' => 'pso', 'PSO478G1425' => 'pso', 'PSO541G3863' => 'pso', 'PSO675G0507' => 'pso', 'PSO782G0338' => 'pso', 'PSO832G0644' => 'pso', 'QL01p013664' => 'qlo', 'QL01p036598' => 'qlo', 'QL05p072984' => 'qlo', 'QL08p005768' => 'qlo', 'QL08p032743' => 'qlo', 'QL93p0073_0439' => 'qlo', 'QL93p0073_0444' => 'qlo', 'RcHm_v2.0_Chr5g0002851' => 'rch', 'RcHm_v2.0_Chr5g0055201' => 'rch', 'RcHm_v2.0_Chr5g0061191' => 'rch', 'RcHm_v2.0_Chr7g0203231' => 'rch', 'Rhsim01G0208100' => 'rsi', 'Rhsim01G0208200' => 'rsi', 'Rhsim02G0106500' => 'rsi', 'Rhsim03G0107900' => 'rsi', 'Rhsim06G0163400' => 'rsi', 'Rhsim13G0105200' => 'rsi', 'Sabra04G0006300' => 'sbr', 'Sabra04G0127000' => 'sbr', 'Sabra08G0148700' => 'sbr', 'Sabra09G0117400' => 'sbr', 'SalBow1G3326' => 'sbo', 'SalBow3G3228' => 'sbo', 'SalBow6G1634' => 'sbo', 'SalBow6G3603' => 'sbo', 'SalBow6G5266' => 'sbo', 'SalBow7G2265' => 'sbo', 'SalBow8G0850' => 'sbo', 'SalBow8G2592' => 'sbo', 'Sc05g0009240' => 'sci', 'Sc12g0002300' => 'sci', 'Sc21g0000100' => 'sci', 'Sc21g0004720' => 'sci', 'Sed0002949' => 'sed', 'Sed0004114' => 'sed', 'Sed0004306' => 'sed', 'Sed0006172' => 'sed', 'Sed0008413' => 'sed', 'Sed0013809' => 'sed', 'Sed0019556' => 'sed', 'SEGI_03570' => 'sgi', 'SEGI_07859' => 'sgi', 'SEGI_15042' => 'sgi', 'SEGI_16263' => 'sgi', 'SEGI_16552' => 'sgi', 'SEGI_24331' => 'sgi', 'SEGI_27316' => 'sgi', 'SEGI_29521' => 'sgi', 'SEGI_41342' => 'sgi', 'SGA_v2.0_scaffold27G11617' => 'sas', 'SGA_v2.0_scaffold316G48428' => 'sas', 'SGA_v2.0_scaffold49G18261' => 'sas', 'SGA_v2.0_scaffold7G03831' => 'sas', 'SGA_v2.0_scaffold93G28359' => 'sas', 'SHI02210' => 'shi', 'SHI06028' => 'shi', 'SHI06321' => 'shi', 'SMO111G0012' => 'smo', 'SMO228G0080' => 'smo', 'SMO356G0756' => 'smo', 'Solyc02g080620.3' => 'sly', 'Solyc06g074530.1' => 'sly', 'Solyc11g066890.1' => 'sly', 'Solyc11g072520.3' => 'sly', 'Sopen02g025330' => 'spe', 'Sopen06g031000' => 'spe', 'Sopen09g008240' => 'spe', 'Sopen09g025210' => 'spe', 'Sopen11g026600' => 'spe', 'Sopen11g030170' => 'spe', 'Sp1g10420' => 'spa', 'Sp3g06570' => 'spa', 'Sp4g10660' => 'spa', 'Sp5g16460' => 'spa', 'Sp6g22710' => 'spa', 'TAR365G0112' => 'tar', 'TAR369G0717' => 'tar', 'TAR374G0976' => 'tar', 'TAR623G1128' => 'tar', 'TAR626G1937' => 'tar', 'TAR627G0123' => 'tar', 'TAR628G0305' => 'tar', 'TAR636G1176' => 'tar', 'TAR636G2442' => 'tar', 'THA.LOC104800556' => 'tha', 'THA.LOC104809501' => 'tha', 'THA.LOC104815126' => 'tha', 'THA.LOC104815732' => 'tha', 'THA.LOC104823528' => 'tha', 'Thecc.02G365600' => 'tca', 'Thecc.06G222300' => 'tca', 'Thecc.09G261800' => 'tca', 'Thecc.09G291400' => 'tca', 'Thhalv10003028m.g' => 'esa', 'Thhalv10007886m.g' => 'esa', 'Thhalv10016085m.g' => 'esa', 'Thhalv10016681m.g' => 'esa', 'Thhalv10020951m.g' => 'esa', 'TPR.G15598' => 'tpr', 'TPR.G29305' => 'tpr', 'TPR.G32395' => 'tpr', 'TPR.G36998' => 'tpr', 'TPR.G4227' => 'tpr', 'TWI18G1433' => 'twi', 'TWI31G0755' => 'twi', 'TWI38G0912' => 'twi', 'TWI75G1097' => 'twi', 'TWI75G1619' => 'twi', 'TWI79G1336' => 'twi', 'unitig_0.g943' => 'ugi', 'unitig_0.g944' => 'ugi', 'unitig_22.g6646' => 'ugi', 'unitig_37.g12681' => 'ugi', 'unitig_8.g3290' => 'ugi', 'vmacro03278' => 'vma', 'vmacro12197' => 'vma', 'vmacro14478' => 'vma', 'vmacro15787' => 'vma', 'vmacro15789' => 'vma', 'vmacro15790' => 'vma', 'vmacro15806' => 'vma', 'vmacro22907' => 'vma', 'vmacro22908' => 'vma', 'vmacro22909' => 'vma', 'vmacro23108' => 'vma', 'VMungo0540G0540' => 'vmu', 'VMungo0540G2468' => 'vmu', 'VMungo1080G0390' => 'vmu', 'VMungo1080G1165' => 'vmu', 'VMungo1127G0170' => 'vmu', 'VMungo1127G2099' => 'vmu', 'VMungo1215G3013' => 'vmu', 'Zm00001eb013110' => 'zma', 'Zm00001eb084260' => 'zma', 'Zm00001eb096110' => 'zma', 'Zm00001eb217510' => 'zma', 'Zm00001eb322550' => 'zma', 'Zm00001eb390770' => 'zma', 'Zm00001eb397170' => 'zma', 'Zm00001eb404610' => 'zma', 'Zm00001eb421790' => 'zma' ), 'gf_id' => 'HOM05D000911', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000911' ), 'data_identifier' => 'HOM05D000911', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000911', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27780' => 'bna', 'A03p35380' => 'bna', 'A04p21160' => 'bna', 'A05p40570' => 'bna', 'A06p26900' => 'bna', 'A08p33230' => 'bna', 'A09p65960' => 'bna', 'A10p18290' => 'bna', 'Aa31LG1G12990' => 'aar', 'Aa31LG1G2980' => 'aar', 'Aa31LG4G14320' => 'aar', 'Aa31LG7G11800' => 'aar', 'Aa31sc36G50' => 'aar', 'Aa31sc36G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3721' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5459' => 'aag', 'Actinidia03028' => 'ach', 'Actinidia03753' => 'ach', 'Actinidia04187' => 'ach', 'Actinidia05509' => 'ach', 'Actinidia24180' => 'ach', 'Actinidia26906' => 'ach', 'Actinidia37097' => 'ach', 'Actinidia38249' => 'ach', 'Ah.01g003470' => 'amhyb', 'Ah.01g004580' => 'amhyb', 'Ah.01g014850' => 'amhyb', 'Ah.01g016830' => 'amhyb', 'Ah.14g088000' => 'amhyb', 'AL1G22980' => 'aly', 'AL3G18990' => 'aly', 'AL4G22440' => 'aly', 'AL4G33180' => 'aly', 'AL5G22920' => 'aly', 'AL6G33660' => 'aly', 'AL8G20720' => 'aly', 'Aqoxy1G00935' => 'aox', 'Aqoxy1G02094' => 'aox', 'Aqoxy2G01239' => 'aox', 'Aqoxy4G01870' => 'aox', 'Aqoxy7G00450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.36ZVTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71EM27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5D6C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH3WRE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3NCM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RIM768' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YB5YRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z36GDV' => 'arhy', 'AT1G08250' => 'ath', 'AT1G11790' => 'ath', 'AT2G27820' => 'ath', 'AT3G07630' => 'ath', 'AT3G44720' => 'ath', 'AT5G22630' => 'ath', 'ATR0693G304' => 'atr', 'ATR0794G109' => 'atr', 'ATR0820G120' => 'atr', 'ATR1159G064' => 'atr', 'Atru.chr10.2239' => 'acertr', 'Atru.chr3.3371' => 'acertr', 'Atru.chr6.3202' => 'acertr', 'AUR62006499' => 'cqu', 'AUR62012718' => 'cqu', 'AUR62021938' => 'cqu', 'AUR62023932' => 'cqu', 'AUR62025034' => 'cqu', 'AUR62025035' => 'cqu', 'AUR62038307' => 'cqu', 'AUR62043466' => 'cqu', 'BcaB02g10748' => 'bca', 'BcaB03g13231' => 'bca', 'BcaB03g14689' => 'bca', 'BcaB05g22716' => 'bca', 'BcaB06g28172' => 'bca', 'BcaB08g36413' => 'bca', 'BcaC01g02186' => 'bca', 'BcaC01g04272' => 'bca', 'BcaC02g08080' => 'bca', 'BcaC02g08227' => 'bca', 'BcaC03g13901' => 'bca', 'BcaC04g19593' => 'bca', 'BcaC04g20874' => 'bca', 'BcaC05g29557' => 'bca', 'BcaC06g35505' => 'bca', 'BcaC07g41954' => 'bca', 'BcaC07g41955' => 'bca', 'BcaC07g41956' => 'bca', 'BcaC07g42519' => 'bca', 'BcaC07g42520' => 'bca', 'BcaC07g42523' => 'bca', 'BcaC07g42524' => 'bca', 'BcaC07g42525' => 'bca', 'BcaC08g47480' => 'bca', 'BcaC08g47481' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00530' => 'bna', 'BolC2t07178H' => 'bol', 'BolC3t16567H' => 'bol', 'BolC4t27234H' => 'bol', 'BolC5t29728H' => 'bol', 'BolC5t34622H' => 'bol', 'BolC6t40321H' => 'bol', 'BolC7t42028H' => 'bol', 'BolC8t49125H' => 'bol', 'BolC8t52538H' => 'bol', 'BolC8t52539H' => 'bol', 'BolC9t56681H' => 'bol', 'BolC9t58266H' => 'bol', 'BolSC21t60294H' => 'bol', 'BraA02t05670Z' => 'bra', 'BraA03t12716Z' => 'bra', 'BraA04t17685Z' => 'bra', 'BraA05t22788Z' => 'bra', 'BraA06t24032Z' => 'bra', 'BraA06t25625Z' => 'bra', 'BraA07t27930Z' => 'bra', 'BraA08t35242Z' => 'bra', 'BraA09t38609Z' => 'bra', 'BraA10t43905Z' => 'bra', 'C02p11060' => 'bna', 'C03p42990' => 'bna', 'C03p67310' => 'bna', 'C04p56990' => 'bna', 'C04p58660' => 'bna', 'C05p09890' => 'bna', 'C05p59680' => 'bna', 'C06p19830' => 'bna', 'C06p53040' => 'bna', 'C07p15230' => 'bna', 'C08p50070' => 'bna', 'C08p50090' => 'bna', 'C09p38330' => 'bna', 'C09p53940' => 'bna', 'CAN.G1014.1' => 'can', 'CAN.G644.30' => 'can', 'CAN.G84.47' => 'can', 'CAN.G919.8' => 'can', 'CANSAT54G0113' => 'cansat', 'CANSAT54G1286' => 'cansat', 'CANSAT64G1020' => 'cansat', 'CARHR008080' => 'chi', 'CARHR008090' => 'chi', 'CARHR012130' => 'chi', 'CARHR038390' => 'chi', 'CARHR082330' => 'chi', 'CARHR120520' => 'chi', 'CARHR151470' => 'chi', 'CARHR190950' => 'chi', 'Carub.0001s0760' => 'cru', 'Carub.0001s1146' => 'cru', 'Carub.0003s0721' => 'cru', 'Carub.0004s0858' => 'cru', 'Carub.0005s1040' => 'cru', 'Carub.0006s2035' => 'cru', 'Carub.0015s0005' => 'cru', 'Ca_01607_v3' => 'car', 'Ca_01677_v3' => 'car', 'Ca_06087_v3' => 'car', 'Ca_19238_v3' => 'car', 'Ca_19373_v3' => 'car', 'Ca_21079_v3' => 'car', 'CBR_g54016' => 'cbr', 'CBR_g54018' => 'cbr', 'CBR_g54020' => 'cbr', 'Cc01_g09780' => 'ccan', 'Cc01_g11680' => 'ccan', 'Cc02_g15610' => 'ccan', 'Cc05_g04350' => 'ccan', 'Cc09_g01580' => 'ccan', 'CDE01G0795' => 'cde', 'CDE02G2024' => 'cde', 'CDE02G2260' => 'cde', 'CDE02G4561' => 'cde', 'CDE05G2733' => 'cde', 'CDE05G3422' => 'cde', 'CDE06G2003' => 'cde', 'CDE08G0576' => 'cde', 'CDE09G0048' => 'cde', 'CDE11G0805' => 'cde', 'Cfa003644' => 'cfa', 'Cfa006290' => 'cfa', 'Cfa010080' => 'cfa', 'Cfa011376' => 'cfa', 'Cfa011576' => 'cfa', 'Cfa011577' => 'cfa', 'Cfa014389' => 'cfa', 'Ciclev10006044m.g' => 'ccl', 'Ciclev10006954m.g' => 'ccl', 'Ciclev10015131m.g' => 'ccl', 'Ciclev10015580m.g' => 'ccl', 'Ciclev10028359m.g' => 'ccl', 'Ciclev10028573m.g' => 'ccl', 'CiPaw.03G159300' => 'cil', 'CiPaw.04G115100' => 'cil', 'CiPaw.09G092800' => 'cil', 'CiPaw.10G071800' => 'cil', 'CiPaw.13G105800' => 'cil', 'CiPaw.13G141000' => 'cil', 'CiPaw.14G103400' => 'cil', 'ClCG01G012700' => 'cla', 'ClCG01G012720' => 'cla', 'ClCG01G021920' => 'cla', 'ClCG02G008870' => 'cla', 'ClCG02G020840' => 'cla', 'ClCG02G021930' => 'cla', 'COL.COLO4_19302' => 'col', 'COL.COLO4_25262' => 'col', 'COL.COLO4_31788' => 'col', 'Cpa.g.c34684' => 'cpa', 'Cpa.g.c36520.1' => 'cpa', 'Cpa.g.c45626' => 'cpa', 'Cpa.g.sc121.17' => 'cpa', 'Cpa.g.sc13.22' => 'cpa', 'Cpa.g.sc87.88' => 'cpa', 'Cre06.g261800' => 'cre', 'CsaV3_1G014500' => 'csa', 'CsaV3_1G014510' => 'csa', 'CsaV3_2G034880' => 'csa', 'CsaV3_6G014760' => 'csa', 'CsaV3_6G021500' => 'csa', 'CsaV3_6G048980' => 'csa', 'CSS0002511' => 'camsi', 'CSS0007556' => 'camsi', 'CSS0008532' => 'camsi', 'CSS0009709' => 'camsi', 'CSS0010486' => 'camsi', 'CSS0016768' => 'camsi', 'CSS0023512' => 'camsi', 'CSS0025341' => 'camsi', 'CSS0027999' => 'camsi', 'CSS0028944' => 'camsi', 'CSS0032292' => 'camsi', 'CSS0032464' => 'camsi', 'CSS0037153' => 'camsi', 'CSS0039256' => 'camsi', 'CSS0048392' => 'camsi', 'CSS0050458' => 'camsi', 'DCAR_004224' => 'dca', 'DCAR_006147' => 'dca', 'DCAR_006465' => 'dca', 'DCAR_008159' => 'dca', 'DCAR_012164' => 'dca', 'DCAR_019764' => 'dca', 'Dinv05418' => 'din', 'Dinv10839' => 'din', 'Dinv12521' => 'din', 'Dinv13900' => 'din', 'Dinv29426' => 'din', 'Duzib150G0263' => 'dzi', 'Duzib168G1178' => 'dzi', 'Duzib168G1924' => 'dzi', 'Duzib170G0299' => 'dzi', 'Duzib170G0813' => 'dzi', 'Duzib235G1128' => 'dzi', 'Duzib248G1060' => 'dzi', 'ECA232G1910' => 'eca', 'ECA233G4621' => 'eca', 'ECA238G1216' => 'eca', 'ECA238G1784' => 'eca', 'ECA248G1242' => 'eca', 'EL10Ac8g20071' => 'bvu', 'EL10Ac9g21086' => 'bvu', 'EL10Ac9g22407' => 'bvu', 'EL10Ac9g22412' => 'bvu', 'Eucgr.A01119' => 'egr', 'Eucgr.E04043' => 'egr', 'Eucgr.J00428' => 'egr', 'Eucgr.J00958' => 'egr', 'FAN11G3091' => 'fan', 'FAN11G3651' => 'fan', 'FAN16G2566' => 'fan', 'FAN21G3155' => 'fan', 'FAN21G3400' => 'fan', 'FAN21G3543' => 'fan', 'FAN25G0234' => 'fan', 'FAN25G1422' => 'fan', 'FAN25G3392' => 'fan', 'FvH4_3g01940' => 'fve', 'FvH4_3g29870' => 'fve', 'FvH4_3g33680' => 'fve', 'Glyma.09G004200' => 'gma', 'Glyma.11G151288' => 'gma', 'Glyma.11G189100' => 'gma', 'Glyma.12G072500' => 'gma', 'Glyma.12G085500' => 'gma', 'Glyma.12G181800' => 'gma', 'Glyma.12G193000' => 'gma', 'Glyma.13G309300' => 'gma', 'Glyma.13G319000' => 'gma', 'Glyma.17G012600' => 'gma', 'Gohir.A06G148600' => 'ghi', 'Gohir.A07G115800' => 'ghi', 'Gohir.A08G003600' => 'ghi', 'Gohir.A09G093300' => 'ghi', 'Gohir.A09G105400' => 'ghi', 'Gohir.A09G105500' => 'ghi', 'Gohir.D06G154600' => 'ghi', 'Gohir.D07G120200' => 'ghi', 'Gohir.D08G013900' => 'ghi', 'Gohir.D09G093100' => 'ghi', 'Gohir.D09G102200' => 'ghi', 'Gohir.D09G102300' => 'ghi', 'Gorai.001G129400' => 'gra', 'Gorai.004G008200' => 'gra', 'Gorai.006G109800' => 'gra', 'Gorai.006G119500' => 'gra', 'Gorai.006G121300' => 'gra', 'Gorai.010G180700' => 'gra', 'GSVIVG01012716001' => 'vvi', 'GSVIVG01025118001' => 'vvi', 'GSVIVG01030439001' => 'vvi', 'GSVIVG01031397001' => 'vvi', 'HanXRQChr01g0004201' => 'han', 'HanXRQChr02g0054941' => 'han', 'HanXRQChr05g0141811' => 'han', 'HanXRQChr07g0197751' => 'han', 'HanXRQChr11g0346691' => 'han', 'HanXRQChr13g0396971' => 'han', 'HanXRQChr14g0432951' => 'han', 'HanXRQChr14g0452001' => 'han', 'HanXRQChr15g0496681' => 'han', 'HanXRQChr17g0557491' => 'han', 'HanXRQChr17g0557501' => 'han', 'Haze_06809' => 'cav', 'Haze_12852' => 'cav', 'Haze_15850' => 'cav', 'Haze_23446' => 'cav', 'Haze_23942' => 'cav', 'Haze_23943' => 'cav', 'Hma1.2p1_0091F.1_g046450' => 'hma', 'Hma1.2p1_0128F.1_g059910' => 'hma', 'Hma1.2p1_0249F.1_g102260' => 'hma', 'Hma1.2p1_0453F.1_g156190' => 'hma', 'Hma1.2p1_0695F.1_g204380' => 'hma', 'Hma1.2p1_0749F.1_g212650' => 'hma', 'Hma1.2p1_2156F.1_g315420' => 'hma', 'Hma1.2p1_2686F.1_g326940' => 'hma', 'HPP92_006428' => 'vpl', 'HPP92_012069' => 'vpl', 'HPP92_014129' => 'vpl', 'HPP92_014133' => 'vpl', 'HPP92_017315' => 'vpl', 'HPP92_026445' => 'vpl', 'HPP92_026446' => 'vpl', 'Hund00774' => 'sun', 'Hund07682' => 'sun', 'Hund21413' => 'sun', 'Hund23462' => 'sun', 'Hund23463' => 'sun', 'Lalb_Chr03g0027911' => 'lal', 'Lalb_Chr13g0304271' => 'lal', 'Lalb_Chr19g0137471' => 'lal', 'Lalb_Chr22g0350651' => 'lal', 'Lalb_Chr24g0395151' => 'lal', 'Lj1A1231T40' => 'lonja', 'Lj1A221T48' => 'lonja', 'Lj1C924T12' => 'lonja', 'Lj2C993G6' => 'lonja', 'Lj3g0005790' => 'lja', 'Lj3g0015432' => 'lja', 'Lj3g0017722' => 'lja', 'Lj3g0018497' => 'lja', 'Lj4g0025071' => 'lja', 'Lsat_1_v5_gn_1_129680' => 'lsa', 'Lsat_1_v5_gn_2_25321' => 'lsa', 'Lsat_1_v5_gn_2_95461' => 'lsa', 'Lsat_1_v5_gn_4_159620' => 'lsa', 'Lsat_1_v5_gn_6_41301' => 'lsa', 'Lsat_1_v5_gn_6_74660' => 'lsa', 'Lsat_1_v5_gn_7_11520' => 'lsa', 'Lsat_1_v5_gn_9_67680' => 'lsa', 'Manes.04G008300' => 'mes', 'Manes.04G008400' => 'mes', 'Manes.04G026500' => 'mes', 'Manes.10G135300' => 'mes', 'Manes.11G157300' => 'mes', 'Manes.12G074000' => 'mes', 'Manes.16G006200' => 'mes', 'Manes.17G026400' => 'mes', 'Mapoly0024s0086' => 'mpo', 'Mapoly0024s0087' => 'mpo', 'Mapoly0071s0057' => 'mpo', 'Mapoly0204s0012' => 'mpo', 'MBI04_g37681_MAGBIO' => 'mbi', 'MBI05_g17779_MAGBIO' => 'mbi', 'MBI12_g31184_MAGBIO' => 'mbi', 'MBI17_g11083_MAGBIO' => 'mbi', 'MBI18_g03883_MAGBIO' => 'mbi', 'MBI18_g28940_MAGBIO' => 'mbi', 'MCO01G690' => 'mco', 'MD03G1109900' => 'mdo', 'MD03G1134800' => 'mdo', 'MD05G1348000' => 'mdo', 'MD10G1322400' => 'mdo', 'MD11G1123300' => 'mdo', 'MD11G1157600' => 'mdo', 'Medtr2g084875' => 'mtr', 'Medtr2g088130' => 'mtr', 'Medtr4g055310' => 'mtr', 'Medtr4g061070' => 'mtr', 'Medtr4g132250' => 'mtr', 'MELO3C004795.2' => 'cme', 'MELO3C004797.2' => 'cme', 'MELO3C007396.2' => 'cme', 'MELO3C019277.2' => 'cme', 'MELO3C021449.2' => 'cme', 'MELO3C025736.2' => 'cme', 'Migut.D02175' => 'egut', 'Migut.H01573' => 'egut', 'Migut.M01327' => 'egut', 'Migut.N02513' => 'egut', 'MSTRG.14638' => 'ama', 'MSTRG.18632' => 'ama', 'MSTRG.7203' => 'ama', 'Nitab4.5_0000533g0140' => 'nta', 'Nitab4.5_0000888g0150' => 'nta', 'Nitab4.5_0001453g0040' => 'nta', 'Nitab4.5_0002827g0090' => 'nta', 'Nitab4.5_0003082g0040' => 'nta', 'Nitab4.5_0007799g0040' => 'nta', 'Nitab4.5_0008983g0010' => 'nta', 'Nitab4.5_0009017g0020' => 'nta', 'Nn1g02132' => 'nnu', 'Nn1g03492' => 'nnu', 'Nn1g03493' => 'nnu', 'Nn1g03494' => 'nnu', 'Nn1g07164' => 'nnu', 'Nn1g07291' => 'nnu', 'Nn2g10655' => 'nnu', 'Nn2g11652' => 'nnu', 'Nn2g14008' => 'nnu', 'Nn3g17476' => 'nnu', 'Nn3g17477' => 'nnu', 'Nn4g22370' => 'nnu', 'Nn4g25255' => 'nnu', 'Nn5g27755' => 'nnu', 'Nn6g34260' => 'nnu', 'Nn6g35041' => 'nnu', 'Oeu005924.1' => 'oeu', 'Oeu008383.1' => 'oeu', 'Oeu014928.1' => 'oeu', 'Oeu019889.1' => 'oeu', 'Oeu022271.1' => 'oeu', 'Oeu025271.1' => 'oeu', 'Oeu036302.1' => 'oeu', 'Oeu044100.1' => 'oeu', 'Os01g0528300' => 'osa', 'Os03g0286200' => 'osa', 'Os04g0406600' => 'osa', 'Os07g0512000' => 'osa', 'Os07g0694600' => 'osa', 'Os08g0411000' => 'osa', 'Os09g0565700' => 'osa', 'Os09g0566050' => 'osa', 'Os10g0523700' => 'osa', 'Peaxi162Scf00002g00514' => 'pax', 'Peaxi162Scf00047g01817' => 'pax', 'Peaxi162Scf00114g00001' => 'pax', 'Peaxi162Scf00147g00613' => 'pax', 'Peaxi162Scf00389g00425' => 'pax', 'PGR042G1139' => 'pgr', 'PGR042G3273' => 'pgr', 'PGR102G2180' => 'pgr', 'PGR119G0234' => 'pgr', 'PGR119G0668' => 'pgr', 'PGSC0003DMG400007122' => 'stu', 'PGSC0003DMG400016478' => 'stu', 'PGSC0003DMG400025374' => 'stu', 'PGSC0003DMG400026536' => 'stu', 'Phvul.003G079600' => 'pvu', 'Phvul.005G115600' => 'pvu', 'Phvul.005G127100' => 'pvu', 'Phvul.006G149500' => 'pvu', 'Phvul.006G149600' => 'pvu', 'Phvul.011G071800' => 'pvu', 'Phvul.011G090400' => 'pvu', 'Potri.004G013400' => 'ptr', 'Potri.004G188100' => 'ptr', 'Potri.008G195500' => 'ptr', 'Potri.009G148800' => 'ptr', 'Potri.011G004700' => 'ptr', 'Pp3c17_22810' => 'ppa', 'Pp3c18_4480' => 'ppa', 'Pp3c19_13030' => 'ppa', 'Pp3c1_33620' => 'ppa', 'Pp3c2_9380' => 'ppa', 'PRCOL_00001023' => 'pco', 'Prupe.3G216300' => 'ppe', 'Prupe.4G019500' => 'ppe', 'Prupe.6G092500' => 'ppe', 'Prupe.6G119200' => 'ppe', 'Psat0s1945g0080' => 'psa', 'Psat0s4167g0040' => 'psa', 'Psat1g185800' => 'psa', 'Psat4g006440' => 'psa', 'Psat4g006480' => 'psa', 'Psat4g168120' => 'psa', 'Psat5g255680' => 'psa', 'Psat5g261760' => 'psa', 'Psat7g222120' => 'psa', 'PSO063G7252' => 'pso', 'PSO170G4778' => 'pso', 'PSO210G2249' => 'pso', 'PSO339G2411' => 'pso', 'PSO339G2457' => 'pso', 'PSO339G2854' => 'pso', 'PSO339G4288' => 'pso', 'PSO339G4615' => 'pso', 'PSO384G2796' => 'pso', 'PSO384G2940' => 'pso', 'PSO384G4227' => 'pso', 'PSO478G1425' => 'pso', 'PSO541G3863' => 'pso', 'PSO675G0507' => 'pso', 'PSO782G0338' => 'pso', 'PSO832G0644' => 'pso', 'QL01p013664' => 'qlo', 'QL01p036598' => 'qlo', 'QL05p072984' => 'qlo', 'QL08p005768' => 'qlo', 'QL08p032743' => 'qlo', 'QL93p0073_0439' => 'qlo', 'QL93p0073_0444' => 'qlo', 'RcHm_v2.0_Chr5g0002851' => 'rch', 'RcHm_v2.0_Chr5g0055201' => 'rch', 'RcHm_v2.0_Chr5g0061191' => 'rch', 'RcHm_v2.0_Chr7g0203231' => 'rch', 'Rhsim01G0208100' => 'rsi', 'Rhsim01G0208200' => 'rsi', 'Rhsim02G0106500' => 'rsi', 'Rhsim03G0107900' => 'rsi', 'Rhsim06G0163400' => 'rsi', 'Rhsim13G0105200' => 'rsi', 'Sabra04G0006300' => 'sbr', 'Sabra04G0127000' => 'sbr', 'Sabra08G0148700' => 'sbr', 'Sabra09G0117400' => 'sbr', 'SalBow1G3326' => 'sbo', 'SalBow3G3228' => 'sbo', 'SalBow6G1634' => 'sbo', 'SalBow6G3603' => 'sbo', 'SalBow6G5266' => 'sbo', 'SalBow7G2265' => 'sbo', 'SalBow8G0850' => 'sbo', 'SalBow8G2592' => 'sbo', 'Sc05g0009240' => 'sci', 'Sc12g0002300' => 'sci', 'Sc21g0000100' => 'sci', 'Sc21g0004720' => 'sci', 'Sed0002949' => 'sed', 'Sed0004114' => 'sed', 'Sed0004306' => 'sed', 'Sed0006172' => 'sed', 'Sed0008413' => 'sed', 'Sed0013809' => 'sed', 'Sed0019556' => 'sed', 'SEGI_03570' => 'sgi', 'SEGI_07859' => 'sgi', 'SEGI_15042' => 'sgi', 'SEGI_16263' => 'sgi', 'SEGI_16552' => 'sgi', 'SEGI_24331' => 'sgi', 'SEGI_27316' => 'sgi', 'SEGI_29521' => 'sgi', 'SEGI_41342' => 'sgi', 'SGA_v2.0_scaffold27G11617' => 'sas', 'SGA_v2.0_scaffold316G48428' => 'sas', 'SGA_v2.0_scaffold49G18261' => 'sas', 'SGA_v2.0_scaffold7G03831' => 'sas', 'SGA_v2.0_scaffold93G28359' => 'sas', 'SHI02210' => 'shi', 'SHI06028' => 'shi', 'SHI06321' => 'shi', 'SMO111G0012' => 'smo', 'SMO228G0080' => 'smo', 'SMO356G0756' => 'smo', 'Solyc02g080620.3' => 'sly', 'Solyc06g074530.1' => 'sly', 'Solyc11g066890.1' => 'sly', 'Solyc11g072520.3' => 'sly', 'Sopen02g025330' => 'spe', 'Sopen06g031000' => 'spe', 'Sopen09g008240' => 'spe', 'Sopen09g025210' => 'spe', 'Sopen11g026600' => 'spe', 'Sopen11g030170' => 'spe', 'Sp1g10420' => 'spa', 'Sp3g06570' => 'spa', 'Sp4g10660' => 'spa', 'Sp5g16460' => 'spa', 'Sp6g22710' => 'spa', 'TAR365G0112' => 'tar', 'TAR369G0717' => 'tar', 'TAR374G0976' => 'tar', 'TAR623G1128' => 'tar', 'TAR626G1937' => 'tar', 'TAR627G0123' => 'tar', 'TAR628G0305' => 'tar', 'TAR636G1176' => 'tar', 'TAR636G2442' => 'tar', 'THA.LOC104800556' => 'tha', 'THA.LOC104809501' => 'tha', 'THA.LOC104815126' => 'tha', 'THA.LOC104815732' => 'tha', 'THA.LOC104823528' => 'tha', 'Thecc.02G365600' => 'tca', 'Thecc.06G222300' => 'tca', 'Thecc.09G261800' => 'tca', 'Thecc.09G291400' => 'tca', 'Thhalv10003028m.g' => 'esa', 'Thhalv10007886m.g' => 'esa', 'Thhalv10016085m.g' => 'esa', 'Thhalv10016681m.g' => 'esa', 'Thhalv10020951m.g' => 'esa', 'TPR.G15598' => 'tpr', 'TPR.G29305' => 'tpr', 'TPR.G32395' => 'tpr', 'TPR.G36998' => 'tpr', 'TPR.G4227' => 'tpr', 'TWI18G1433' => 'twi', 'TWI31G0755' => 'twi', 'TWI38G0912' => 'twi', 'TWI75G1097' => 'twi', 'TWI75G1619' => 'twi', 'TWI79G1336' => 'twi', 'unitig_0.g943' => 'ugi', 'unitig_0.g944' => 'ugi', 'unitig_22.g6646' => 'ugi', 'unitig_37.g12681' => 'ugi', 'unitig_8.g3290' => 'ugi', 'vmacro03278' => 'vma', 'vmacro12197' => 'vma', 'vmacro14478' => 'vma', 'vmacro15787' => 'vma', 'vmacro15789' => 'vma', 'vmacro15790' => 'vma', 'vmacro15806' => 'vma', 'vmacro22907' => 'vma', 'vmacro22908' => 'vma', 'vmacro22909' => 'vma', 'vmacro23108' => 'vma', 'VMungo0540G0540' => 'vmu', 'VMungo0540G2468' => 'vmu', 'VMungo1080G0390' => 'vmu', 'VMungo1080G1165' => 'vmu', 'VMungo1127G0170' => 'vmu', 'VMungo1127G2099' => 'vmu', 'VMungo1215G3013' => 'vmu', 'Zm00001eb013110' => 'zma', 'Zm00001eb084260' => 'zma', 'Zm00001eb096110' => 'zma', 'Zm00001eb217510' => 'zma', 'Zm00001eb322550' => 'zma', 'Zm00001eb390770' => 'zma', 'Zm00001eb397170' => 'zma', 'Zm00001eb404610' => 'zma', 'Zm00001eb421790' => 'zma' ) $gf_id = 'HOM05D000911' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000911' ) $data_identifier = 'HOM05D000911' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 16, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 5, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 6, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 8, 'nnu' => (int) 16, 'oeu' => (int) 8, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 5, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 16, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421790' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000911', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27780' => 'bna', 'A03p35380' => 'bna', 'A04p21160' => 'bna', 'A05p40570' => 'bna', 'A06p26900' => 'bna', 'A08p33230' => 'bna', 'A09p65960' => 'bna', 'A10p18290' => 'bna', 'Aa31LG1G12990' => 'aar', 'Aa31LG1G2980' => 'aar', 'Aa31LG4G14320' => 'aar', 'Aa31LG7G11800' => 'aar', 'Aa31sc36G50' => 'aar', 'Aa31sc36G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3721' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5459' => 'aag', 'Actinidia03028' => 'ach', 'Actinidia03753' => 'ach', 'Actinidia04187' => 'ach', 'Actinidia05509' => 'ach', 'Actinidia24180' => 'ach', 'Actinidia26906' => 'ach', 'Actinidia37097' => 'ach', 'Actinidia38249' => 'ach', 'Ah.01g003470' => 'amhyb', 'Ah.01g004580' => 'amhyb', 'Ah.01g014850' => 'amhyb', 'Ah.01g016830' => 'amhyb', 'Ah.14g088000' => 'amhyb', 'AL1G22980' => 'aly', 'AL3G18990' => 'aly', 'AL4G22440' => 'aly', 'AL4G33180' => 'aly', 'AL5G22920' => 'aly', 'AL6G33660' => 'aly', 'AL8G20720' => 'aly', 'Aqoxy1G00935' => 'aox', 'Aqoxy1G02094' => 'aox', 'Aqoxy2G01239' => 'aox', 'Aqoxy4G01870' => 'aox', 'Aqoxy7G00450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.36ZVTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71EM27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5D6C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH3WRE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3NCM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RIM768' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YB5YRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z36GDV' => 'arhy', 'AT1G08250' => 'ath', 'AT1G11790' => 'ath', 'AT2G27820' => 'ath', 'AT3G07630' => 'ath', 'AT3G44720' => 'ath', 'AT5G22630' => 'ath', 'ATR0693G304' => 'atr', 'ATR0794G109' => 'atr', 'ATR0820G120' => 'atr', 'ATR1159G064' => 'atr', 'Atru.chr10.2239' => 'acertr', 'Atru.chr3.3371' => 'acertr', 'Atru.chr6.3202' => 'acertr', 'AUR62006499' => 'cqu', 'AUR62012718' => 'cqu', 'AUR62021938' => 'cqu', 'AUR62023932' => 'cqu', 'AUR62025034' => 'cqu', 'AUR62025035' => 'cqu', 'AUR62038307' => 'cqu', 'AUR62043466' => 'cqu', 'BcaB02g10748' => 'bca', 'BcaB03g13231' => 'bca', 'BcaB03g14689' => 'bca', 'BcaB05g22716' => 'bca', 'BcaB06g28172' => 'bca', 'BcaB08g36413' => 'bca', 'BcaC01g02186' => 'bca', 'BcaC01g04272' => 'bca', 'BcaC02g08080' => 'bca', 'BcaC02g08227' => 'bca', 'BcaC03g13901' => 'bca', 'BcaC04g19593' => 'bca', 'BcaC04g20874' => 'bca', 'BcaC05g29557' => 'bca', 'BcaC06g35505' => 'bca', 'BcaC07g41954' => 'bca', 'BcaC07g41955' => 'bca', 'BcaC07g41956' => 'bca', 'BcaC07g42519' => 'bca', 'BcaC07g42520' => 'bca', 'BcaC07g42523' => 'bca', 'BcaC07g42524' => 'bca', 'BcaC07g42525' => 'bca', 'BcaC08g47480' => 'bca', 'BcaC08g47481' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00530' => 'bna', 'BolC2t07178H' => 'bol', 'BolC3t16567H' => 'bol', 'BolC4t27234H' => 'bol', 'BolC5t29728H' => 'bol', 'BolC5t34622H' => 'bol', 'BolC6t40321H' => 'bol', 'BolC7t42028H' => 'bol', 'BolC8t49125H' => 'bol', 'BolC8t52538H' => 'bol', 'BolC8t52539H' => 'bol', 'BolC9t56681H' => 'bol', 'BolC9t58266H' => 'bol', 'BolSC21t60294H' => 'bol', 'BraA02t05670Z' => 'bra', 'BraA03t12716Z' => 'bra', 'BraA04t17685Z' => 'bra', 'BraA05t22788Z' => 'bra', 'BraA06t24032Z' => 'bra', 'BraA06t25625Z' => 'bra', 'BraA07t27930Z' => 'bra', 'BraA08t35242Z' => 'bra', 'BraA09t38609Z' => 'bra', 'BraA10t43905Z' => 'bra', 'C02p11060' => 'bna', 'C03p42990' => 'bna', 'C03p67310' => 'bna', 'C04p56990' => 'bna', 'C04p58660' => 'bna', 'C05p09890' => 'bna', 'C05p59680' => 'bna', 'C06p19830' => 'bna', 'C06p53040' => 'bna', 'C07p15230' => 'bna', 'C08p50070' => 'bna', 'C08p50090' => 'bna', 'C09p38330' => 'bna', 'C09p53940' => 'bna', 'CAN.G1014.1' => 'can', 'CAN.G644.30' => 'can', 'CAN.G84.47' => 'can', 'CAN.G919.8' => 'can', 'CANSAT54G0113' => 'cansat', 'CANSAT54G1286' => 'cansat', 'CANSAT64G1020' => 'cansat', 'CARHR008080' => 'chi', 'CARHR008090' => 'chi', 'CARHR012130' => 'chi', 'CARHR038390' => 'chi', 'CARHR082330' => 'chi', 'CARHR120520' => 'chi', 'CARHR151470' => 'chi', 'CARHR190950' => 'chi', 'Carub.0001s0760' => 'cru', 'Carub.0001s1146' => 'cru', 'Carub.0003s0721' => 'cru', 'Carub.0004s0858' => 'cru', 'Carub.0005s1040' => 'cru', 'Carub.0006s2035' => 'cru', 'Carub.0015s0005' => 'cru', 'Ca_01607_v3' => 'car', 'Ca_01677_v3' => 'car', 'Ca_06087_v3' => 'car', 'Ca_19238_v3' => 'car', 'Ca_19373_v3' => 'car', 'Ca_21079_v3' => 'car', 'CBR_g54016' => 'cbr', 'CBR_g54018' => 'cbr', 'CBR_g54020' => 'cbr', 'Cc01_g09780' => 'ccan', 'Cc01_g11680' => 'ccan', 'Cc02_g15610' => 'ccan', 'Cc05_g04350' => 'ccan', 'Cc09_g01580' => 'ccan', 'CDE01G0795' => 'cde', 'CDE02G2024' => 'cde', 'CDE02G2260' => 'cde', 'CDE02G4561' => 'cde', 'CDE05G2733' => 'cde', 'CDE05G3422' => 'cde', 'CDE06G2003' => 'cde', 'CDE08G0576' => 'cde', 'CDE09G0048' => 'cde', 'CDE11G0805' => 'cde', 'Cfa003644' => 'cfa', 'Cfa006290' => 'cfa', 'Cfa010080' => 'cfa', 'Cfa011376' => 'cfa', 'Cfa011576' => 'cfa', 'Cfa011577' => 'cfa', 'Cfa014389' => 'cfa', 'Ciclev10006044m.g' => 'ccl', 'Ciclev10006954m.g' => 'ccl', 'Ciclev10015131m.g' => 'ccl', 'Ciclev10015580m.g' => 'ccl', 'Ciclev10028359m.g' => 'ccl', 'Ciclev10028573m.g' => 'ccl', 'CiPaw.03G159300' => 'cil', 'CiPaw.04G115100' => 'cil', 'CiPaw.09G092800' => 'cil', 'CiPaw.10G071800' => 'cil', 'CiPaw.13G105800' => 'cil', 'CiPaw.13G141000' => 'cil', 'CiPaw.14G103400' => 'cil', 'ClCG01G012700' => 'cla', 'ClCG01G012720' => 'cla', 'ClCG01G021920' => 'cla', 'ClCG02G008870' => 'cla', 'ClCG02G020840' => 'cla', 'ClCG02G021930' => 'cla', 'COL.COLO4_19302' => 'col', 'COL.COLO4_25262' => 'col', 'COL.COLO4_31788' => 'col', 'Cpa.g.c34684' => 'cpa', 'Cpa.g.c36520.1' => 'cpa', 'Cpa.g.c45626' => 'cpa', 'Cpa.g.sc121.17' => 'cpa', 'Cpa.g.sc13.22' => 'cpa', 'Cpa.g.sc87.88' => 'cpa', 'Cre06.g261800' => 'cre', 'CsaV3_1G014500' => 'csa', 'CsaV3_1G014510' => 'csa', 'CsaV3_2G034880' => 'csa', 'CsaV3_6G014760' => 'csa', 'CsaV3_6G021500' => 'csa', 'CsaV3_6G048980' => 'csa', 'CSS0002511' => 'camsi', 'CSS0007556' => 'camsi', 'CSS0008532' => 'camsi', 'CSS0009709' => 'camsi', 'CSS0010486' => 'camsi', 'CSS0016768' => 'camsi', 'CSS0023512' => 'camsi', 'CSS0025341' => 'camsi', 'CSS0027999' => 'camsi', 'CSS0028944' => 'camsi', 'CSS0032292' => 'camsi', 'CSS0032464' => 'camsi', 'CSS0037153' => 'camsi', 'CSS0039256' => 'camsi', 'CSS0048392' => 'camsi', 'CSS0050458' => 'camsi', 'DCAR_004224' => 'dca', 'DCAR_006147' => 'dca', 'DCAR_006465' => 'dca', 'DCAR_008159' => 'dca', 'DCAR_012164' => 'dca', 'DCAR_019764' => 'dca', 'Dinv05418' => 'din', 'Dinv10839' => 'din', 'Dinv12521' => 'din', 'Dinv13900' => 'din', 'Dinv29426' => 'din', 'Duzib150G0263' => 'dzi', 'Duzib168G1178' => 'dzi', 'Duzib168G1924' => 'dzi', 'Duzib170G0299' => 'dzi', 'Duzib170G0813' => 'dzi', 'Duzib235G1128' => 'dzi', 'Duzib248G1060' => 'dzi', 'ECA232G1910' => 'eca', 'ECA233G4621' => 'eca', 'ECA238G1216' => 'eca', 'ECA238G1784' => 'eca', 'ECA248G1242' => 'eca', 'EL10Ac8g20071' => 'bvu', 'EL10Ac9g21086' => 'bvu', 'EL10Ac9g22407' => 'bvu', 'EL10Ac9g22412' => 'bvu', 'Eucgr.A01119' => 'egr', 'Eucgr.E04043' => 'egr', 'Eucgr.J00428' => 'egr', 'Eucgr.J00958' => 'egr', 'FAN11G3091' => 'fan', 'FAN11G3651' => 'fan', 'FAN16G2566' => 'fan', 'FAN21G3155' => 'fan', 'FAN21G3400' => 'fan', 'FAN21G3543' => 'fan', 'FAN25G0234' => 'fan', 'FAN25G1422' => 'fan', 'FAN25G3392' => 'fan', 'FvH4_3g01940' => 'fve', 'FvH4_3g29870' => 'fve', 'FvH4_3g33680' => 'fve', 'Glyma.09G004200' => 'gma', 'Glyma.11G151288' => 'gma', 'Glyma.11G189100' => 'gma', 'Glyma.12G072500' => 'gma', 'Glyma.12G085500' => 'gma', 'Glyma.12G181800' => 'gma', 'Glyma.12G193000' => 'gma', 'Glyma.13G309300' => 'gma', 'Glyma.13G319000' => 'gma', 'Glyma.17G012600' => 'gma', 'Gohir.A06G148600' => 'ghi', 'Gohir.A07G115800' => 'ghi', 'Gohir.A08G003600' => 'ghi', 'Gohir.A09G093300' => 'ghi', 'Gohir.A09G105400' => 'ghi', 'Gohir.A09G105500' => 'ghi', 'Gohir.D06G154600' => 'ghi', 'Gohir.D07G120200' => 'ghi', 'Gohir.D08G013900' => 'ghi', 'Gohir.D09G093100' => 'ghi', 'Gohir.D09G102200' => 'ghi', 'Gohir.D09G102300' => 'ghi', 'Gorai.001G129400' => 'gra', 'Gorai.004G008200' => 'gra', 'Gorai.006G109800' => 'gra', 'Gorai.006G119500' => 'gra', 'Gorai.006G121300' => 'gra', 'Gorai.010G180700' => 'gra', 'GSVIVG01012716001' => 'vvi', 'GSVIVG01025118001' => 'vvi', 'GSVIVG01030439001' => 'vvi', 'GSVIVG01031397001' => 'vvi', 'HanXRQChr01g0004201' => 'han', 'HanXRQChr02g0054941' => 'han', 'HanXRQChr05g0141811' => 'han', 'HanXRQChr07g0197751' => 'han', 'HanXRQChr11g0346691' => 'han', 'HanXRQChr13g0396971' => 'han', 'HanXRQChr14g0432951' => 'han', 'HanXRQChr14g0452001' => 'han', 'HanXRQChr15g0496681' => 'han', 'HanXRQChr17g0557491' => 'han', 'HanXRQChr17g0557501' => 'han', 'Haze_06809' => 'cav', 'Haze_12852' => 'cav', 'Haze_15850' => 'cav', 'Haze_23446' => 'cav', 'Haze_23942' => 'cav', 'Haze_23943' => 'cav', 'Hma1.2p1_0091F.1_g046450' => 'hma', 'Hma1.2p1_0128F.1_g059910' => 'hma', 'Hma1.2p1_0249F.1_g102260' => 'hma', 'Hma1.2p1_0453F.1_g156190' => 'hma', 'Hma1.2p1_0695F.1_g204380' => 'hma', 'Hma1.2p1_0749F.1_g212650' => 'hma', 'Hma1.2p1_2156F.1_g315420' => 'hma', 'Hma1.2p1_2686F.1_g326940' => 'hma', 'HPP92_006428' => 'vpl', 'HPP92_012069' => 'vpl', 'HPP92_014129' => 'vpl', 'HPP92_014133' => 'vpl', 'HPP92_017315' => 'vpl', 'HPP92_026445' => 'vpl', 'HPP92_026446' => 'vpl', 'Hund00774' => 'sun', 'Hund07682' => 'sun', 'Hund21413' => 'sun', 'Hund23462' => 'sun', 'Hund23463' => 'sun', 'Lalb_Chr03g0027911' => 'lal', 'Lalb_Chr13g0304271' => 'lal', 'Lalb_Chr19g0137471' => 'lal', 'Lalb_Chr22g0350651' => 'lal', 'Lalb_Chr24g0395151' => 'lal', 'Lj1A1231T40' => 'lonja', 'Lj1A221T48' => 'lonja', 'Lj1C924T12' => 'lonja', 'Lj2C993G6' => 'lonja', 'Lj3g0005790' => 'lja', 'Lj3g0015432' => 'lja', 'Lj3g0017722' => 'lja', 'Lj3g0018497' => 'lja', 'Lj4g0025071' => 'lja', 'Lsat_1_v5_gn_1_129680' => 'lsa', 'Lsat_1_v5_gn_2_25321' => 'lsa', 'Lsat_1_v5_gn_2_95461' => 'lsa', 'Lsat_1_v5_gn_4_159620' => 'lsa', 'Lsat_1_v5_gn_6_41301' => 'lsa', 'Lsat_1_v5_gn_6_74660' => 'lsa', 'Lsat_1_v5_gn_7_11520' => 'lsa', 'Lsat_1_v5_gn_9_67680' => 'lsa', 'Manes.04G008300' => 'mes', 'Manes.04G008400' => 'mes', 'Manes.04G026500' => 'mes', 'Manes.10G135300' => 'mes', 'Manes.11G157300' => 'mes', 'Manes.12G074000' => 'mes', 'Manes.16G006200' => 'mes', 'Manes.17G026400' => 'mes', 'Mapoly0024s0086' => 'mpo', 'Mapoly0024s0087' => 'mpo', 'Mapoly0071s0057' => 'mpo', 'Mapoly0204s0012' => 'mpo', 'MBI04_g37681_MAGBIO' => 'mbi', 'MBI05_g17779_MAGBIO' => 'mbi', 'MBI12_g31184_MAGBIO' => 'mbi', 'MBI17_g11083_MAGBIO' => 'mbi', 'MBI18_g03883_MAGBIO' => 'mbi', 'MBI18_g28940_MAGBIO' => 'mbi', 'MCO01G690' => 'mco', 'MD03G1109900' => 'mdo', 'MD03G1134800' => 'mdo', 'MD05G1348000' => 'mdo', 'MD10G1322400' => 'mdo', 'MD11G1123300' => 'mdo', 'MD11G1157600' => 'mdo', 'Medtr2g084875' => 'mtr', 'Medtr2g088130' => 'mtr', 'Medtr4g055310' => 'mtr', 'Medtr4g061070' => 'mtr', 'Medtr4g132250' => 'mtr', 'MELO3C004795.2' => 'cme', 'MELO3C004797.2' => 'cme', 'MELO3C007396.2' => 'cme', 'MELO3C019277.2' => 'cme', 'MELO3C021449.2' => 'cme', 'MELO3C025736.2' => 'cme', 'Migut.D02175' => 'egut', 'Migut.H01573' => 'egut', 'Migut.M01327' => 'egut', 'Migut.N02513' => 'egut', 'MSTRG.14638' => 'ama', 'MSTRG.18632' => 'ama', 'MSTRG.7203' => 'ama', 'Nitab4.5_0000533g0140' => 'nta', 'Nitab4.5_0000888g0150' => 'nta', 'Nitab4.5_0001453g0040' => 'nta', 'Nitab4.5_0002827g0090' => 'nta', 'Nitab4.5_0003082g0040' => 'nta', 'Nitab4.5_0007799g0040' => 'nta', 'Nitab4.5_0008983g0010' => 'nta', 'Nitab4.5_0009017g0020' => 'nta', 'Nn1g02132' => 'nnu', 'Nn1g03492' => 'nnu', 'Nn1g03493' => 'nnu', 'Nn1g03494' => 'nnu', 'Nn1g07164' => 'nnu', 'Nn1g07291' => 'nnu', 'Nn2g10655' => 'nnu', 'Nn2g11652' => 'nnu', 'Nn2g14008' => 'nnu', 'Nn3g17476' => 'nnu', 'Nn3g17477' => 'nnu', 'Nn4g22370' => 'nnu', 'Nn4g25255' => 'nnu', 'Nn5g27755' => 'nnu', 'Nn6g34260' => 'nnu', 'Nn6g35041' => 'nnu', 'Oeu005924.1' => 'oeu', 'Oeu008383.1' => 'oeu', 'Oeu014928.1' => 'oeu', 'Oeu019889.1' => 'oeu', 'Oeu022271.1' => 'oeu', 'Oeu025271.1' => 'oeu', 'Oeu036302.1' => 'oeu', 'Oeu044100.1' => 'oeu', 'Os01g0528300' => 'osa', 'Os03g0286200' => 'osa', 'Os04g0406600' => 'osa', 'Os07g0512000' => 'osa', 'Os07g0694600' => 'osa', 'Os08g0411000' => 'osa', 'Os09g0565700' => 'osa', 'Os09g0566050' => 'osa', 'Os10g0523700' => 'osa', 'Peaxi162Scf00002g00514' => 'pax', 'Peaxi162Scf00047g01817' => 'pax', 'Peaxi162Scf00114g00001' => 'pax', 'Peaxi162Scf00147g00613' => 'pax', 'Peaxi162Scf00389g00425' => 'pax', 'PGR042G1139' => 'pgr', 'PGR042G3273' => 'pgr', 'PGR102G2180' => 'pgr', 'PGR119G0234' => 'pgr', 'PGR119G0668' => 'pgr', 'PGSC0003DMG400007122' => 'stu', 'PGSC0003DMG400016478' => 'stu', 'PGSC0003DMG400025374' => 'stu', 'PGSC0003DMG400026536' => 'stu', 'Phvul.003G079600' => 'pvu', 'Phvul.005G115600' => 'pvu', 'Phvul.005G127100' => 'pvu', 'Phvul.006G149500' => 'pvu', 'Phvul.006G149600' => 'pvu', 'Phvul.011G071800' => 'pvu', 'Phvul.011G090400' => 'pvu', 'Potri.004G013400' => 'ptr', 'Potri.004G188100' => 'ptr', 'Potri.008G195500' => 'ptr', 'Potri.009G148800' => 'ptr', 'Potri.011G004700' => 'ptr', 'Pp3c17_22810' => 'ppa', 'Pp3c18_4480' => 'ppa', 'Pp3c19_13030' => 'ppa', 'Pp3c1_33620' => 'ppa', 'Pp3c2_9380' => 'ppa', 'PRCOL_00001023' => 'pco', 'Prupe.3G216300' => 'ppe', 'Prupe.4G019500' => 'ppe', 'Prupe.6G092500' => 'ppe', 'Prupe.6G119200' => 'ppe', 'Psat0s1945g0080' => 'psa', 'Psat0s4167g0040' => 'psa', 'Psat1g185800' => 'psa', 'Psat4g006440' => 'psa', 'Psat4g006480' => 'psa', 'Psat4g168120' => 'psa', 'Psat5g255680' => 'psa', 'Psat5g261760' => 'psa', 'Psat7g222120' => 'psa', 'PSO063G7252' => 'pso', 'PSO170G4778' => 'pso', 'PSO210G2249' => 'pso', 'PSO339G2411' => 'pso', 'PSO339G2457' => 'pso', 'PSO339G2854' => 'pso', 'PSO339G4288' => 'pso', 'PSO339G4615' => 'pso', 'PSO384G2796' => 'pso', 'PSO384G2940' => 'pso', 'PSO384G4227' => 'pso', 'PSO478G1425' => 'pso', 'PSO541G3863' => 'pso', 'PSO675G0507' => 'pso', 'PSO782G0338' => 'pso', 'PSO832G0644' => 'pso', 'QL01p013664' => 'qlo', 'QL01p036598' => 'qlo', 'QL05p072984' => 'qlo', 'QL08p005768' => 'qlo', 'QL08p032743' => 'qlo', 'QL93p0073_0439' => 'qlo', 'QL93p0073_0444' => 'qlo', 'RcHm_v2.0_Chr5g0002851' => 'rch', 'RcHm_v2.0_Chr5g0055201' => 'rch', 'RcHm_v2.0_Chr5g0061191' => 'rch', 'RcHm_v2.0_Chr7g0203231' => 'rch', 'Rhsim01G0208100' => 'rsi', 'Rhsim01G0208200' => 'rsi', 'Rhsim02G0106500' => 'rsi', 'Rhsim03G0107900' => 'rsi', 'Rhsim06G0163400' => 'rsi', 'Rhsim13G0105200' => 'rsi', 'Sabra04G0006300' => 'sbr', 'Sabra04G0127000' => 'sbr', 'Sabra08G0148700' => 'sbr', 'Sabra09G0117400' => 'sbr', 'SalBow1G3326' => 'sbo', 'SalBow3G3228' => 'sbo', 'SalBow6G1634' => 'sbo', 'SalBow6G3603' => 'sbo', 'SalBow6G5266' => 'sbo', 'SalBow7G2265' => 'sbo', 'SalBow8G0850' => 'sbo', 'SalBow8G2592' => 'sbo', 'Sc05g0009240' => 'sci', 'Sc12g0002300' => 'sci', 'Sc21g0000100' => 'sci', 'Sc21g0004720' => 'sci', 'Sed0002949' => 'sed', 'Sed0004114' => 'sed', 'Sed0004306' => 'sed', 'Sed0006172' => 'sed', 'Sed0008413' => 'sed', 'Sed0013809' => 'sed', 'Sed0019556' => 'sed', 'SEGI_03570' => 'sgi', 'SEGI_07859' => 'sgi', 'SEGI_15042' => 'sgi', 'SEGI_16263' => 'sgi', 'SEGI_16552' => 'sgi', 'SEGI_24331' => 'sgi', 'SEGI_27316' => 'sgi', 'SEGI_29521' => 'sgi', 'SEGI_41342' => 'sgi', 'SGA_v2.0_scaffold27G11617' => 'sas', 'SGA_v2.0_scaffold316G48428' => 'sas', 'SGA_v2.0_scaffold49G18261' => 'sas', 'SGA_v2.0_scaffold7G03831' => 'sas', 'SGA_v2.0_scaffold93G28359' => 'sas', 'SHI02210' => 'shi', 'SHI06028' => 'shi', 'SHI06321' => 'shi', 'SMO111G0012' => 'smo', 'SMO228G0080' => 'smo', 'SMO356G0756' => 'smo', 'Solyc02g080620.3' => 'sly', 'Solyc06g074530.1' => 'sly', 'Solyc11g066890.1' => 'sly', 'Solyc11g072520.3' => 'sly', 'Sopen02g025330' => 'spe', 'Sopen06g031000' => 'spe', 'Sopen09g008240' => 'spe', 'Sopen09g025210' => 'spe', 'Sopen11g026600' => 'spe', 'Sopen11g030170' => 'spe', 'Sp1g10420' => 'spa', 'Sp3g06570' => 'spa', 'Sp4g10660' => 'spa', 'Sp5g16460' => 'spa', 'Sp6g22710' => 'spa', 'TAR365G0112' => 'tar', 'TAR369G0717' => 'tar', 'TAR374G0976' => 'tar', 'TAR623G1128' => 'tar', 'TAR626G1937' => 'tar', 'TAR627G0123' => 'tar', 'TAR628G0305' => 'tar', 'TAR636G1176' => 'tar', 'TAR636G2442' => 'tar', 'THA.LOC104800556' => 'tha', 'THA.LOC104809501' => 'tha', 'THA.LOC104815126' => 'tha', 'THA.LOC104815732' => 'tha', 'THA.LOC104823528' => 'tha', 'Thecc.02G365600' => 'tca', 'Thecc.06G222300' => 'tca', 'Thecc.09G261800' => 'tca', 'Thecc.09G291400' => 'tca', 'Thhalv10003028m.g' => 'esa', 'Thhalv10007886m.g' => 'esa', 'Thhalv10016085m.g' => 'esa', 'Thhalv10016681m.g' => 'esa', 'Thhalv10020951m.g' => 'esa', 'TPR.G15598' => 'tpr', 'TPR.G29305' => 'tpr', 'TPR.G32395' => 'tpr', 'TPR.G36998' => 'tpr', 'TPR.G4227' => 'tpr', 'TWI18G1433' => 'twi', 'TWI31G0755' => 'twi', 'TWI38G0912' => 'twi', 'TWI75G1097' => 'twi', 'TWI75G1619' => 'twi', 'TWI79G1336' => 'twi', 'unitig_0.g943' => 'ugi', 'unitig_0.g944' => 'ugi', 'unitig_22.g6646' => 'ugi', 'unitig_37.g12681' => 'ugi', 'unitig_8.g3290' => 'ugi', 'vmacro03278' => 'vma', 'vmacro12197' => 'vma', 'vmacro14478' => 'vma', 'vmacro15787' => 'vma', 'vmacro15789' => 'vma', 'vmacro15790' => 'vma', 'vmacro15806' => 'vma', 'vmacro22907' => 'vma', 'vmacro22908' => 'vma', 'vmacro22909' => 'vma', 'vmacro23108' => 'vma', 'VMungo0540G0540' => 'vmu', 'VMungo0540G2468' => 'vmu', 'VMungo1080G0390' => 'vmu', 'VMungo1080G1165' => 'vmu', 'VMungo1127G0170' => 'vmu', 'VMungo1127G2099' => 'vmu', 'VMungo1215G3013' => 'vmu', 'Zm00001eb013110' => 'zma', 'Zm00001eb084260' => 'zma', 'Zm00001eb096110' => 'zma', 'Zm00001eb217510' => 'zma', 'Zm00001eb322550' => 'zma', 'Zm00001eb390770' => 'zma', 'Zm00001eb397170' => 'zma', 'Zm00001eb404610' => 'zma', 'Zm00001eb421790' => 'zma' ), 'gf_id' => 'HOM05D000911', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000911' ), 'data_identifier' => 'HOM05D000911', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000911', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27780' => 'bna', 'A03p35380' => 'bna', 'A04p21160' => 'bna', 'A05p40570' => 'bna', 'A06p26900' => 'bna', 'A08p33230' => 'bna', 'A09p65960' => 'bna', 'A10p18290' => 'bna', 'Aa31LG1G12990' => 'aar', 'Aa31LG1G2980' => 'aar', 'Aa31LG4G14320' => 'aar', 'Aa31LG7G11800' => 'aar', 'Aa31sc36G50' => 'aar', 'Aa31sc36G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3721' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5459' => 'aag', 'Actinidia03028' => 'ach', 'Actinidia03753' => 'ach', 'Actinidia04187' => 'ach', 'Actinidia05509' => 'ach', 'Actinidia24180' => 'ach', 'Actinidia26906' => 'ach', 'Actinidia37097' => 'ach', 'Actinidia38249' => 'ach', 'Ah.01g003470' => 'amhyb', 'Ah.01g004580' => 'amhyb', 'Ah.01g014850' => 'amhyb', 'Ah.01g016830' => 'amhyb', 'Ah.14g088000' => 'amhyb', 'AL1G22980' => 'aly', 'AL3G18990' => 'aly', 'AL4G22440' => 'aly', 'AL4G33180' => 'aly', 'AL5G22920' => 'aly', 'AL6G33660' => 'aly', 'AL8G20720' => 'aly', 'Aqoxy1G00935' => 'aox', 'Aqoxy1G02094' => 'aox', 'Aqoxy2G01239' => 'aox', 'Aqoxy4G01870' => 'aox', 'Aqoxy7G00450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.36ZVTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71EM27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5D6C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH3WRE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3NCM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RIM768' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YB5YRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z36GDV' => 'arhy', 'AT1G08250' => 'ath', 'AT1G11790' => 'ath', 'AT2G27820' => 'ath', 'AT3G07630' => 'ath', 'AT3G44720' => 'ath', 'AT5G22630' => 'ath', 'ATR0693G304' => 'atr', 'ATR0794G109' => 'atr', 'ATR0820G120' => 'atr', 'ATR1159G064' => 'atr', 'Atru.chr10.2239' => 'acertr', 'Atru.chr3.3371' => 'acertr', 'Atru.chr6.3202' => 'acertr', 'AUR62006499' => 'cqu', 'AUR62012718' => 'cqu', 'AUR62021938' => 'cqu', 'AUR62023932' => 'cqu', 'AUR62025034' => 'cqu', 'AUR62025035' => 'cqu', 'AUR62038307' => 'cqu', 'AUR62043466' => 'cqu', 'BcaB02g10748' => 'bca', 'BcaB03g13231' => 'bca', 'BcaB03g14689' => 'bca', 'BcaB05g22716' => 'bca', 'BcaB06g28172' => 'bca', 'BcaB08g36413' => 'bca', 'BcaC01g02186' => 'bca', 'BcaC01g04272' => 'bca', 'BcaC02g08080' => 'bca', 'BcaC02g08227' => 'bca', 'BcaC03g13901' => 'bca', 'BcaC04g19593' => 'bca', 'BcaC04g20874' => 'bca', 'BcaC05g29557' => 'bca', 'BcaC06g35505' => 'bca', 'BcaC07g41954' => 'bca', 'BcaC07g41955' => 'bca', 'BcaC07g41956' => 'bca', 'BcaC07g42519' => 'bca', 'BcaC07g42520' => 'bca', 'BcaC07g42523' => 'bca', 'BcaC07g42524' => 'bca', 'BcaC07g42525' => 'bca', 'BcaC08g47480' => 'bca', 'BcaC08g47481' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00530' => 'bna', 'BolC2t07178H' => 'bol', 'BolC3t16567H' => 'bol', 'BolC4t27234H' => 'bol', 'BolC5t29728H' => 'bol', 'BolC5t34622H' => 'bol', 'BolC6t40321H' => 'bol', 'BolC7t42028H' => 'bol', 'BolC8t49125H' => 'bol', 'BolC8t52538H' => 'bol', 'BolC8t52539H' => 'bol', 'BolC9t56681H' => 'bol', 'BolC9t58266H' => 'bol', 'BolSC21t60294H' => 'bol', 'BraA02t05670Z' => 'bra', 'BraA03t12716Z' => 'bra', 'BraA04t17685Z' => 'bra', 'BraA05t22788Z' => 'bra', 'BraA06t24032Z' => 'bra', 'BraA06t25625Z' => 'bra', 'BraA07t27930Z' => 'bra', 'BraA08t35242Z' => 'bra', 'BraA09t38609Z' => 'bra', 'BraA10t43905Z' => 'bra', 'C02p11060' => 'bna', 'C03p42990' => 'bna', 'C03p67310' => 'bna', 'C04p56990' => 'bna', 'C04p58660' => 'bna', 'C05p09890' => 'bna', 'C05p59680' => 'bna', 'C06p19830' => 'bna', 'C06p53040' => 'bna', 'C07p15230' => 'bna', 'C08p50070' => 'bna', 'C08p50090' => 'bna', 'C09p38330' => 'bna', 'C09p53940' => 'bna', 'CAN.G1014.1' => 'can', 'CAN.G644.30' => 'can', 'CAN.G84.47' => 'can', 'CAN.G919.8' => 'can', 'CANSAT54G0113' => 'cansat', 'CANSAT54G1286' => 'cansat', 'CANSAT64G1020' => 'cansat', 'CARHR008080' => 'chi', 'CARHR008090' => 'chi', 'CARHR012130' => 'chi', 'CARHR038390' => 'chi', 'CARHR082330' => 'chi', 'CARHR120520' => 'chi', 'CARHR151470' => 'chi', 'CARHR190950' => 'chi', 'Carub.0001s0760' => 'cru', 'Carub.0001s1146' => 'cru', 'Carub.0003s0721' => 'cru', 'Carub.0004s0858' => 'cru', 'Carub.0005s1040' => 'cru', 'Carub.0006s2035' => 'cru', 'Carub.0015s0005' => 'cru', 'Ca_01607_v3' => 'car', 'Ca_01677_v3' => 'car', 'Ca_06087_v3' => 'car', 'Ca_19238_v3' => 'car', 'Ca_19373_v3' => 'car', 'Ca_21079_v3' => 'car', 'CBR_g54016' => 'cbr', 'CBR_g54018' => 'cbr', 'CBR_g54020' => 'cbr', 'Cc01_g09780' => 'ccan', 'Cc01_g11680' => 'ccan', 'Cc02_g15610' => 'ccan', 'Cc05_g04350' => 'ccan', 'Cc09_g01580' => 'ccan', 'CDE01G0795' => 'cde', 'CDE02G2024' => 'cde', 'CDE02G2260' => 'cde', 'CDE02G4561' => 'cde', 'CDE05G2733' => 'cde', 'CDE05G3422' => 'cde', 'CDE06G2003' => 'cde', 'CDE08G0576' => 'cde', 'CDE09G0048' => 'cde', 'CDE11G0805' => 'cde', 'Cfa003644' => 'cfa', 'Cfa006290' => 'cfa', 'Cfa010080' => 'cfa', 'Cfa011376' => 'cfa', 'Cfa011576' => 'cfa', 'Cfa011577' => 'cfa', 'Cfa014389' => 'cfa', 'Ciclev10006044m.g' => 'ccl', 'Ciclev10006954m.g' => 'ccl', 'Ciclev10015131m.g' => 'ccl', 'Ciclev10015580m.g' => 'ccl', 'Ciclev10028359m.g' => 'ccl', 'Ciclev10028573m.g' => 'ccl', 'CiPaw.03G159300' => 'cil', 'CiPaw.04G115100' => 'cil', 'CiPaw.09G092800' => 'cil', 'CiPaw.10G071800' => 'cil', 'CiPaw.13G105800' => 'cil', 'CiPaw.13G141000' => 'cil', 'CiPaw.14G103400' => 'cil', 'ClCG01G012700' => 'cla', 'ClCG01G012720' => 'cla', 'ClCG01G021920' => 'cla', 'ClCG02G008870' => 'cla', 'ClCG02G020840' => 'cla', 'ClCG02G021930' => 'cla', 'COL.COLO4_19302' => 'col', 'COL.COLO4_25262' => 'col', 'COL.COLO4_31788' => 'col', 'Cpa.g.c34684' => 'cpa', 'Cpa.g.c36520.1' => 'cpa', 'Cpa.g.c45626' => 'cpa', 'Cpa.g.sc121.17' => 'cpa', 'Cpa.g.sc13.22' => 'cpa', 'Cpa.g.sc87.88' => 'cpa', 'Cre06.g261800' => 'cre', 'CsaV3_1G014500' => 'csa', 'CsaV3_1G014510' => 'csa', 'CsaV3_2G034880' => 'csa', 'CsaV3_6G014760' => 'csa', 'CsaV3_6G021500' => 'csa', 'CsaV3_6G048980' => 'csa', 'CSS0002511' => 'camsi', 'CSS0007556' => 'camsi', 'CSS0008532' => 'camsi', 'CSS0009709' => 'camsi', 'CSS0010486' => 'camsi', 'CSS0016768' => 'camsi', 'CSS0023512' => 'camsi', 'CSS0025341' => 'camsi', 'CSS0027999' => 'camsi', 'CSS0028944' => 'camsi', 'CSS0032292' => 'camsi', 'CSS0032464' => 'camsi', 'CSS0037153' => 'camsi', 'CSS0039256' => 'camsi', 'CSS0048392' => 'camsi', 'CSS0050458' => 'camsi', 'DCAR_004224' => 'dca', 'DCAR_006147' => 'dca', 'DCAR_006465' => 'dca', 'DCAR_008159' => 'dca', 'DCAR_012164' => 'dca', 'DCAR_019764' => 'dca', 'Dinv05418' => 'din', 'Dinv10839' => 'din', 'Dinv12521' => 'din', 'Dinv13900' => 'din', 'Dinv29426' => 'din', 'Duzib150G0263' => 'dzi', 'Duzib168G1178' => 'dzi', 'Duzib168G1924' => 'dzi', 'Duzib170G0299' => 'dzi', 'Duzib170G0813' => 'dzi', 'Duzib235G1128' => 'dzi', 'Duzib248G1060' => 'dzi', 'ECA232G1910' => 'eca', 'ECA233G4621' => 'eca', 'ECA238G1216' => 'eca', 'ECA238G1784' => 'eca', 'ECA248G1242' => 'eca', 'EL10Ac8g20071' => 'bvu', 'EL10Ac9g21086' => 'bvu', 'EL10Ac9g22407' => 'bvu', 'EL10Ac9g22412' => 'bvu', 'Eucgr.A01119' => 'egr', 'Eucgr.E04043' => 'egr', 'Eucgr.J00428' => 'egr', 'Eucgr.J00958' => 'egr', 'FAN11G3091' => 'fan', 'FAN11G3651' => 'fan', 'FAN16G2566' => 'fan', 'FAN21G3155' => 'fan', 'FAN21G3400' => 'fan', 'FAN21G3543' => 'fan', 'FAN25G0234' => 'fan', 'FAN25G1422' => 'fan', 'FAN25G3392' => 'fan', 'FvH4_3g01940' => 'fve', 'FvH4_3g29870' => 'fve', 'FvH4_3g33680' => 'fve', 'Glyma.09G004200' => 'gma', 'Glyma.11G151288' => 'gma', 'Glyma.11G189100' => 'gma', 'Glyma.12G072500' => 'gma', 'Glyma.12G085500' => 'gma', 'Glyma.12G181800' => 'gma', 'Glyma.12G193000' => 'gma', 'Glyma.13G309300' => 'gma', 'Glyma.13G319000' => 'gma', 'Glyma.17G012600' => 'gma', 'Gohir.A06G148600' => 'ghi', 'Gohir.A07G115800' => 'ghi', 'Gohir.A08G003600' => 'ghi', 'Gohir.A09G093300' => 'ghi', 'Gohir.A09G105400' => 'ghi', 'Gohir.A09G105500' => 'ghi', 'Gohir.D06G154600' => 'ghi', 'Gohir.D07G120200' => 'ghi', 'Gohir.D08G013900' => 'ghi', 'Gohir.D09G093100' => 'ghi', 'Gohir.D09G102200' => 'ghi', 'Gohir.D09G102300' => 'ghi', 'Gorai.001G129400' => 'gra', 'Gorai.004G008200' => 'gra', 'Gorai.006G109800' => 'gra', 'Gorai.006G119500' => 'gra', 'Gorai.006G121300' => 'gra', 'Gorai.010G180700' => 'gra', 'GSVIVG01012716001' => 'vvi', 'GSVIVG01025118001' => 'vvi', 'GSVIVG01030439001' => 'vvi', 'GSVIVG01031397001' => 'vvi', 'HanXRQChr01g0004201' => 'han', 'HanXRQChr02g0054941' => 'han', 'HanXRQChr05g0141811' => 'han', 'HanXRQChr07g0197751' => 'han', 'HanXRQChr11g0346691' => 'han', 'HanXRQChr13g0396971' => 'han', 'HanXRQChr14g0432951' => 'han', 'HanXRQChr14g0452001' => 'han', 'HanXRQChr15g0496681' => 'han', 'HanXRQChr17g0557491' => 'han', 'HanXRQChr17g0557501' => 'han', 'Haze_06809' => 'cav', 'Haze_12852' => 'cav', 'Haze_15850' => 'cav', 'Haze_23446' => 'cav', 'Haze_23942' => 'cav', 'Haze_23943' => 'cav', 'Hma1.2p1_0091F.1_g046450' => 'hma', 'Hma1.2p1_0128F.1_g059910' => 'hma', 'Hma1.2p1_0249F.1_g102260' => 'hma', 'Hma1.2p1_0453F.1_g156190' => 'hma', 'Hma1.2p1_0695F.1_g204380' => 'hma', 'Hma1.2p1_0749F.1_g212650' => 'hma', 'Hma1.2p1_2156F.1_g315420' => 'hma', 'Hma1.2p1_2686F.1_g326940' => 'hma', 'HPP92_006428' => 'vpl', 'HPP92_012069' => 'vpl', 'HPP92_014129' => 'vpl', 'HPP92_014133' => 'vpl', 'HPP92_017315' => 'vpl', 'HPP92_026445' => 'vpl', 'HPP92_026446' => 'vpl', 'Hund00774' => 'sun', 'Hund07682' => 'sun', 'Hund21413' => 'sun', 'Hund23462' => 'sun', 'Hund23463' => 'sun', 'Lalb_Chr03g0027911' => 'lal', 'Lalb_Chr13g0304271' => 'lal', 'Lalb_Chr19g0137471' => 'lal', 'Lalb_Chr22g0350651' => 'lal', 'Lalb_Chr24g0395151' => 'lal', 'Lj1A1231T40' => 'lonja', 'Lj1A221T48' => 'lonja', 'Lj1C924T12' => 'lonja', 'Lj2C993G6' => 'lonja', 'Lj3g0005790' => 'lja', 'Lj3g0015432' => 'lja', 'Lj3g0017722' => 'lja', 'Lj3g0018497' => 'lja', 'Lj4g0025071' => 'lja', 'Lsat_1_v5_gn_1_129680' => 'lsa', 'Lsat_1_v5_gn_2_25321' => 'lsa', 'Lsat_1_v5_gn_2_95461' => 'lsa', 'Lsat_1_v5_gn_4_159620' => 'lsa', 'Lsat_1_v5_gn_6_41301' => 'lsa', 'Lsat_1_v5_gn_6_74660' => 'lsa', 'Lsat_1_v5_gn_7_11520' => 'lsa', 'Lsat_1_v5_gn_9_67680' => 'lsa', 'Manes.04G008300' => 'mes', 'Manes.04G008400' => 'mes', 'Manes.04G026500' => 'mes', 'Manes.10G135300' => 'mes', 'Manes.11G157300' => 'mes', 'Manes.12G074000' => 'mes', 'Manes.16G006200' => 'mes', 'Manes.17G026400' => 'mes', 'Mapoly0024s0086' => 'mpo', 'Mapoly0024s0087' => 'mpo', 'Mapoly0071s0057' => 'mpo', 'Mapoly0204s0012' => 'mpo', 'MBI04_g37681_MAGBIO' => 'mbi', 'MBI05_g17779_MAGBIO' => 'mbi', 'MBI12_g31184_MAGBIO' => 'mbi', 'MBI17_g11083_MAGBIO' => 'mbi', 'MBI18_g03883_MAGBIO' => 'mbi', 'MBI18_g28940_MAGBIO' => 'mbi', 'MCO01G690' => 'mco', 'MD03G1109900' => 'mdo', 'MD03G1134800' => 'mdo', 'MD05G1348000' => 'mdo', 'MD10G1322400' => 'mdo', 'MD11G1123300' => 'mdo', 'MD11G1157600' => 'mdo', 'Medtr2g084875' => 'mtr', 'Medtr2g088130' => 'mtr', 'Medtr4g055310' => 'mtr', 'Medtr4g061070' => 'mtr', 'Medtr4g132250' => 'mtr', 'MELO3C004795.2' => 'cme', 'MELO3C004797.2' => 'cme', 'MELO3C007396.2' => 'cme', 'MELO3C019277.2' => 'cme', 'MELO3C021449.2' => 'cme', 'MELO3C025736.2' => 'cme', 'Migut.D02175' => 'egut', 'Migut.H01573' => 'egut', 'Migut.M01327' => 'egut', 'Migut.N02513' => 'egut', 'MSTRG.14638' => 'ama', 'MSTRG.18632' => 'ama', 'MSTRG.7203' => 'ama', 'Nitab4.5_0000533g0140' => 'nta', 'Nitab4.5_0000888g0150' => 'nta', 'Nitab4.5_0001453g0040' => 'nta', 'Nitab4.5_0002827g0090' => 'nta', 'Nitab4.5_0003082g0040' => 'nta', 'Nitab4.5_0007799g0040' => 'nta', 'Nitab4.5_0008983g0010' => 'nta', 'Nitab4.5_0009017g0020' => 'nta', 'Nn1g02132' => 'nnu', 'Nn1g03492' => 'nnu', 'Nn1g03493' => 'nnu', 'Nn1g03494' => 'nnu', 'Nn1g07164' => 'nnu', 'Nn1g07291' => 'nnu', 'Nn2g10655' => 'nnu', 'Nn2g11652' => 'nnu', 'Nn2g14008' => 'nnu', 'Nn3g17476' => 'nnu', 'Nn3g17477' => 'nnu', 'Nn4g22370' => 'nnu', 'Nn4g25255' => 'nnu', 'Nn5g27755' => 'nnu', 'Nn6g34260' => 'nnu', 'Nn6g35041' => 'nnu', 'Oeu005924.1' => 'oeu', 'Oeu008383.1' => 'oeu', 'Oeu014928.1' => 'oeu', 'Oeu019889.1' => 'oeu', 'Oeu022271.1' => 'oeu', 'Oeu025271.1' => 'oeu', 'Oeu036302.1' => 'oeu', 'Oeu044100.1' => 'oeu', 'Os01g0528300' => 'osa', 'Os03g0286200' => 'osa', 'Os04g0406600' => 'osa', 'Os07g0512000' => 'osa', 'Os07g0694600' => 'osa', 'Os08g0411000' => 'osa', 'Os09g0565700' => 'osa', 'Os09g0566050' => 'osa', 'Os10g0523700' => 'osa', 'Peaxi162Scf00002g00514' => 'pax', 'Peaxi162Scf00047g01817' => 'pax', 'Peaxi162Scf00114g00001' => 'pax', 'Peaxi162Scf00147g00613' => 'pax', 'Peaxi162Scf00389g00425' => 'pax', 'PGR042G1139' => 'pgr', 'PGR042G3273' => 'pgr', 'PGR102G2180' => 'pgr', 'PGR119G0234' => 'pgr', 'PGR119G0668' => 'pgr', 'PGSC0003DMG400007122' => 'stu', 'PGSC0003DMG400016478' => 'stu', 'PGSC0003DMG400025374' => 'stu', 'PGSC0003DMG400026536' => 'stu', 'Phvul.003G079600' => 'pvu', 'Phvul.005G115600' => 'pvu', 'Phvul.005G127100' => 'pvu', 'Phvul.006G149500' => 'pvu', 'Phvul.006G149600' => 'pvu', 'Phvul.011G071800' => 'pvu', 'Phvul.011G090400' => 'pvu', 'Potri.004G013400' => 'ptr', 'Potri.004G188100' => 'ptr', 'Potri.008G195500' => 'ptr', 'Potri.009G148800' => 'ptr', 'Potri.011G004700' => 'ptr', 'Pp3c17_22810' => 'ppa', 'Pp3c18_4480' => 'ppa', 'Pp3c19_13030' => 'ppa', 'Pp3c1_33620' => 'ppa', 'Pp3c2_9380' => 'ppa', 'PRCOL_00001023' => 'pco', 'Prupe.3G216300' => 'ppe', 'Prupe.4G019500' => 'ppe', 'Prupe.6G092500' => 'ppe', 'Prupe.6G119200' => 'ppe', 'Psat0s1945g0080' => 'psa', 'Psat0s4167g0040' => 'psa', 'Psat1g185800' => 'psa', 'Psat4g006440' => 'psa', 'Psat4g006480' => 'psa', 'Psat4g168120' => 'psa', 'Psat5g255680' => 'psa', 'Psat5g261760' => 'psa', 'Psat7g222120' => 'psa', 'PSO063G7252' => 'pso', 'PSO170G4778' => 'pso', 'PSO210G2249' => 'pso', 'PSO339G2411' => 'pso', 'PSO339G2457' => 'pso', 'PSO339G2854' => 'pso', 'PSO339G4288' => 'pso', 'PSO339G4615' => 'pso', 'PSO384G2796' => 'pso', 'PSO384G2940' => 'pso', 'PSO384G4227' => 'pso', 'PSO478G1425' => 'pso', 'PSO541G3863' => 'pso', 'PSO675G0507' => 'pso', 'PSO782G0338' => 'pso', 'PSO832G0644' => 'pso', 'QL01p013664' => 'qlo', 'QL01p036598' => 'qlo', 'QL05p072984' => 'qlo', 'QL08p005768' => 'qlo', 'QL08p032743' => 'qlo', 'QL93p0073_0439' => 'qlo', 'QL93p0073_0444' => 'qlo', 'RcHm_v2.0_Chr5g0002851' => 'rch', 'RcHm_v2.0_Chr5g0055201' => 'rch', 'RcHm_v2.0_Chr5g0061191' => 'rch', 'RcHm_v2.0_Chr7g0203231' => 'rch', 'Rhsim01G0208100' => 'rsi', 'Rhsim01G0208200' => 'rsi', 'Rhsim02G0106500' => 'rsi', 'Rhsim03G0107900' => 'rsi', 'Rhsim06G0163400' => 'rsi', 'Rhsim13G0105200' => 'rsi', 'Sabra04G0006300' => 'sbr', 'Sabra04G0127000' => 'sbr', 'Sabra08G0148700' => 'sbr', 'Sabra09G0117400' => 'sbr', 'SalBow1G3326' => 'sbo', 'SalBow3G3228' => 'sbo', 'SalBow6G1634' => 'sbo', 'SalBow6G3603' => 'sbo', 'SalBow6G5266' => 'sbo', 'SalBow7G2265' => 'sbo', 'SalBow8G0850' => 'sbo', 'SalBow8G2592' => 'sbo', 'Sc05g0009240' => 'sci', 'Sc12g0002300' => 'sci', 'Sc21g0000100' => 'sci', 'Sc21g0004720' => 'sci', 'Sed0002949' => 'sed', 'Sed0004114' => 'sed', 'Sed0004306' => 'sed', 'Sed0006172' => 'sed', 'Sed0008413' => 'sed', 'Sed0013809' => 'sed', 'Sed0019556' => 'sed', 'SEGI_03570' => 'sgi', 'SEGI_07859' => 'sgi', 'SEGI_15042' => 'sgi', 'SEGI_16263' => 'sgi', 'SEGI_16552' => 'sgi', 'SEGI_24331' => 'sgi', 'SEGI_27316' => 'sgi', 'SEGI_29521' => 'sgi', 'SEGI_41342' => 'sgi', 'SGA_v2.0_scaffold27G11617' => 'sas', 'SGA_v2.0_scaffold316G48428' => 'sas', 'SGA_v2.0_scaffold49G18261' => 'sas', 'SGA_v2.0_scaffold7G03831' => 'sas', 'SGA_v2.0_scaffold93G28359' => 'sas', 'SHI02210' => 'shi', 'SHI06028' => 'shi', 'SHI06321' => 'shi', 'SMO111G0012' => 'smo', 'SMO228G0080' => 'smo', 'SMO356G0756' => 'smo', 'Solyc02g080620.3' => 'sly', 'Solyc06g074530.1' => 'sly', 'Solyc11g066890.1' => 'sly', 'Solyc11g072520.3' => 'sly', 'Sopen02g025330' => 'spe', 'Sopen06g031000' => 'spe', 'Sopen09g008240' => 'spe', 'Sopen09g025210' => 'spe', 'Sopen11g026600' => 'spe', 'Sopen11g030170' => 'spe', 'Sp1g10420' => 'spa', 'Sp3g06570' => 'spa', 'Sp4g10660' => 'spa', 'Sp5g16460' => 'spa', 'Sp6g22710' => 'spa', 'TAR365G0112' => 'tar', 'TAR369G0717' => 'tar', 'TAR374G0976' => 'tar', 'TAR623G1128' => 'tar', 'TAR626G1937' => 'tar', 'TAR627G0123' => 'tar', 'TAR628G0305' => 'tar', 'TAR636G1176' => 'tar', 'TAR636G2442' => 'tar', 'THA.LOC104800556' => 'tha', 'THA.LOC104809501' => 'tha', 'THA.LOC104815126' => 'tha', 'THA.LOC104815732' => 'tha', 'THA.LOC104823528' => 'tha', 'Thecc.02G365600' => 'tca', 'Thecc.06G222300' => 'tca', 'Thecc.09G261800' => 'tca', 'Thecc.09G291400' => 'tca', 'Thhalv10003028m.g' => 'esa', 'Thhalv10007886m.g' => 'esa', 'Thhalv10016085m.g' => 'esa', 'Thhalv10016681m.g' => 'esa', 'Thhalv10020951m.g' => 'esa', 'TPR.G15598' => 'tpr', 'TPR.G29305' => 'tpr', 'TPR.G32395' => 'tpr', 'TPR.G36998' => 'tpr', 'TPR.G4227' => 'tpr', 'TWI18G1433' => 'twi', 'TWI31G0755' => 'twi', 'TWI38G0912' => 'twi', 'TWI75G1097' => 'twi', 'TWI75G1619' => 'twi', 'TWI79G1336' => 'twi', 'unitig_0.g943' => 'ugi', 'unitig_0.g944' => 'ugi', 'unitig_22.g6646' => 'ugi', 'unitig_37.g12681' => 'ugi', 'unitig_8.g3290' => 'ugi', 'vmacro03278' => 'vma', 'vmacro12197' => 'vma', 'vmacro14478' => 'vma', 'vmacro15787' => 'vma', 'vmacro15789' => 'vma', 'vmacro15790' => 'vma', 'vmacro15806' => 'vma', 'vmacro22907' => 'vma', 'vmacro22908' => 'vma', 'vmacro22909' => 'vma', 'vmacro23108' => 'vma', 'VMungo0540G0540' => 'vmu', 'VMungo0540G2468' => 'vmu', 'VMungo1080G0390' => 'vmu', 'VMungo1080G1165' => 'vmu', 'VMungo1127G0170' => 'vmu', 'VMungo1127G2099' => 'vmu', 'VMungo1215G3013' => 'vmu', 'Zm00001eb013110' => 'zma', 'Zm00001eb084260' => 'zma', 'Zm00001eb096110' => 'zma', 'Zm00001eb217510' => 'zma', 'Zm00001eb322550' => 'zma', 'Zm00001eb390770' => 'zma', 'Zm00001eb397170' => 'zma', 'Zm00001eb404610' => 'zma', 'Zm00001eb421790' => 'zma' ) $gf_id = 'HOM05D000911' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000911' ) $data_identifier = 'HOM05D000911' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 16, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 5, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 6, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 8, 'nnu' => (int) 16, 'oeu' => (int) 8, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 5, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 16, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421790' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000911', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27780' => 'bna', 'A03p35380' => 'bna', 'A04p21160' => 'bna', 'A05p40570' => 'bna', 'A06p26900' => 'bna', 'A08p33230' => 'bna', 'A09p65960' => 'bna', 'A10p18290' => 'bna', 'Aa31LG1G12990' => 'aar', 'Aa31LG1G2980' => 'aar', 'Aa31LG4G14320' => 'aar', 'Aa31LG7G11800' => 'aar', 'Aa31sc36G50' => 'aar', 'Aa31sc36G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3721' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5459' => 'aag', 'Actinidia03028' => 'ach', 'Actinidia03753' => 'ach', 'Actinidia04187' => 'ach', 'Actinidia05509' => 'ach', 'Actinidia24180' => 'ach', 'Actinidia26906' => 'ach', 'Actinidia37097' => 'ach', 'Actinidia38249' => 'ach', 'Ah.01g003470' => 'amhyb', 'Ah.01g004580' => 'amhyb', 'Ah.01g014850' => 'amhyb', 'Ah.01g016830' => 'amhyb', 'Ah.14g088000' => 'amhyb', 'AL1G22980' => 'aly', 'AL3G18990' => 'aly', 'AL4G22440' => 'aly', 'AL4G33180' => 'aly', 'AL5G22920' => 'aly', 'AL6G33660' => 'aly', 'AL8G20720' => 'aly', 'Aqoxy1G00935' => 'aox', 'Aqoxy1G02094' => 'aox', 'Aqoxy2G01239' => 'aox', 'Aqoxy4G01870' => 'aox', 'Aqoxy7G00450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.36ZVTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71EM27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5D6C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH3WRE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3NCM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RIM768' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YB5YRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z36GDV' => 'arhy', 'AT1G08250' => 'ath', 'AT1G11790' => 'ath', 'AT2G27820' => 'ath', 'AT3G07630' => 'ath', 'AT3G44720' => 'ath', 'AT5G22630' => 'ath', 'ATR0693G304' => 'atr', 'ATR0794G109' => 'atr', 'ATR0820G120' => 'atr', 'ATR1159G064' => 'atr', 'Atru.chr10.2239' => 'acertr', 'Atru.chr3.3371' => 'acertr', 'Atru.chr6.3202' => 'acertr', 'AUR62006499' => 'cqu', 'AUR62012718' => 'cqu', 'AUR62021938' => 'cqu', 'AUR62023932' => 'cqu', 'AUR62025034' => 'cqu', 'AUR62025035' => 'cqu', 'AUR62038307' => 'cqu', 'AUR62043466' => 'cqu', 'BcaB02g10748' => 'bca', 'BcaB03g13231' => 'bca', 'BcaB03g14689' => 'bca', 'BcaB05g22716' => 'bca', 'BcaB06g28172' => 'bca', 'BcaB08g36413' => 'bca', 'BcaC01g02186' => 'bca', 'BcaC01g04272' => 'bca', 'BcaC02g08080' => 'bca', 'BcaC02g08227' => 'bca', 'BcaC03g13901' => 'bca', 'BcaC04g19593' => 'bca', 'BcaC04g20874' => 'bca', 'BcaC05g29557' => 'bca', 'BcaC06g35505' => 'bca', 'BcaC07g41954' => 'bca', 'BcaC07g41955' => 'bca', 'BcaC07g41956' => 'bca', 'BcaC07g42519' => 'bca', 'BcaC07g42520' => 'bca', 'BcaC07g42523' => 'bca', 'BcaC07g42524' => 'bca', 'BcaC07g42525' => 'bca', 'BcaC08g47480' => 'bca', 'BcaC08g47481' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00530' => 'bna', 'BolC2t07178H' => 'bol', 'BolC3t16567H' => 'bol', 'BolC4t27234H' => 'bol', 'BolC5t29728H' => 'bol', 'BolC5t34622H' => 'bol', 'BolC6t40321H' => 'bol', 'BolC7t42028H' => 'bol', 'BolC8t49125H' => 'bol', 'BolC8t52538H' => 'bol', 'BolC8t52539H' => 'bol', 'BolC9t56681H' => 'bol', 'BolC9t58266H' => 'bol', 'BolSC21t60294H' => 'bol', 'BraA02t05670Z' => 'bra', 'BraA03t12716Z' => 'bra', 'BraA04t17685Z' => 'bra', 'BraA05t22788Z' => 'bra', 'BraA06t24032Z' => 'bra', 'BraA06t25625Z' => 'bra', 'BraA07t27930Z' => 'bra', 'BraA08t35242Z' => 'bra', 'BraA09t38609Z' => 'bra', 'BraA10t43905Z' => 'bra', 'C02p11060' => 'bna', 'C03p42990' => 'bna', 'C03p67310' => 'bna', 'C04p56990' => 'bna', 'C04p58660' => 'bna', 'C05p09890' => 'bna', 'C05p59680' => 'bna', 'C06p19830' => 'bna', 'C06p53040' => 'bna', 'C07p15230' => 'bna', 'C08p50070' => 'bna', 'C08p50090' => 'bna', 'C09p38330' => 'bna', 'C09p53940' => 'bna', 'CAN.G1014.1' => 'can', 'CAN.G644.30' => 'can', 'CAN.G84.47' => 'can', 'CAN.G919.8' => 'can', 'CANSAT54G0113' => 'cansat', 'CANSAT54G1286' => 'cansat', 'CANSAT64G1020' => 'cansat', 'CARHR008080' => 'chi', 'CARHR008090' => 'chi', 'CARHR012130' => 'chi', 'CARHR038390' => 'chi', 'CARHR082330' => 'chi', 'CARHR120520' => 'chi', 'CARHR151470' => 'chi', 'CARHR190950' => 'chi', 'Carub.0001s0760' => 'cru', 'Carub.0001s1146' => 'cru', 'Carub.0003s0721' => 'cru', 'Carub.0004s0858' => 'cru', 'Carub.0005s1040' => 'cru', 'Carub.0006s2035' => 'cru', 'Carub.0015s0005' => 'cru', 'Ca_01607_v3' => 'car', 'Ca_01677_v3' => 'car', 'Ca_06087_v3' => 'car', 'Ca_19238_v3' => 'car', 'Ca_19373_v3' => 'car', 'Ca_21079_v3' => 'car', 'CBR_g54016' => 'cbr', 'CBR_g54018' => 'cbr', 'CBR_g54020' => 'cbr', 'Cc01_g09780' => 'ccan', 'Cc01_g11680' => 'ccan', 'Cc02_g15610' => 'ccan', 'Cc05_g04350' => 'ccan', 'Cc09_g01580' => 'ccan', 'CDE01G0795' => 'cde', 'CDE02G2024' => 'cde', 'CDE02G2260' => 'cde', 'CDE02G4561' => 'cde', 'CDE05G2733' => 'cde', 'CDE05G3422' => 'cde', 'CDE06G2003' => 'cde', 'CDE08G0576' => 'cde', 'CDE09G0048' => 'cde', 'CDE11G0805' => 'cde', 'Cfa003644' => 'cfa', 'Cfa006290' => 'cfa', 'Cfa010080' => 'cfa', 'Cfa011376' => 'cfa', 'Cfa011576' => 'cfa', 'Cfa011577' => 'cfa', 'Cfa014389' => 'cfa', 'Ciclev10006044m.g' => 'ccl', 'Ciclev10006954m.g' => 'ccl', 'Ciclev10015131m.g' => 'ccl', 'Ciclev10015580m.g' => 'ccl', 'Ciclev10028359m.g' => 'ccl', 'Ciclev10028573m.g' => 'ccl', 'CiPaw.03G159300' => 'cil', 'CiPaw.04G115100' => 'cil', 'CiPaw.09G092800' => 'cil', 'CiPaw.10G071800' => 'cil', 'CiPaw.13G105800' => 'cil', 'CiPaw.13G141000' => 'cil', 'CiPaw.14G103400' => 'cil', 'ClCG01G012700' => 'cla', 'ClCG01G012720' => 'cla', 'ClCG01G021920' => 'cla', 'ClCG02G008870' => 'cla', 'ClCG02G020840' => 'cla', 'ClCG02G021930' => 'cla', 'COL.COLO4_19302' => 'col', 'COL.COLO4_25262' => 'col', 'COL.COLO4_31788' => 'col', 'Cpa.g.c34684' => 'cpa', 'Cpa.g.c36520.1' => 'cpa', 'Cpa.g.c45626' => 'cpa', 'Cpa.g.sc121.17' => 'cpa', 'Cpa.g.sc13.22' => 'cpa', 'Cpa.g.sc87.88' => 'cpa', 'Cre06.g261800' => 'cre', 'CsaV3_1G014500' => 'csa', 'CsaV3_1G014510' => 'csa', 'CsaV3_2G034880' => 'csa', 'CsaV3_6G014760' => 'csa', 'CsaV3_6G021500' => 'csa', 'CsaV3_6G048980' => 'csa', 'CSS0002511' => 'camsi', 'CSS0007556' => 'camsi', 'CSS0008532' => 'camsi', 'CSS0009709' => 'camsi', 'CSS0010486' => 'camsi', 'CSS0016768' => 'camsi', 'CSS0023512' => 'camsi', 'CSS0025341' => 'camsi', 'CSS0027999' => 'camsi', 'CSS0028944' => 'camsi', 'CSS0032292' => 'camsi', 'CSS0032464' => 'camsi', 'CSS0037153' => 'camsi', 'CSS0039256' => 'camsi', 'CSS0048392' => 'camsi', 'CSS0050458' => 'camsi', 'DCAR_004224' => 'dca', 'DCAR_006147' => 'dca', 'DCAR_006465' => 'dca', 'DCAR_008159' => 'dca', 'DCAR_012164' => 'dca', 'DCAR_019764' => 'dca', 'Dinv05418' => 'din', 'Dinv10839' => 'din', 'Dinv12521' => 'din', 'Dinv13900' => 'din', 'Dinv29426' => 'din', 'Duzib150G0263' => 'dzi', 'Duzib168G1178' => 'dzi', 'Duzib168G1924' => 'dzi', 'Duzib170G0299' => 'dzi', 'Duzib170G0813' => 'dzi', 'Duzib235G1128' => 'dzi', 'Duzib248G1060' => 'dzi', 'ECA232G1910' => 'eca', 'ECA233G4621' => 'eca', 'ECA238G1216' => 'eca', 'ECA238G1784' => 'eca', 'ECA248G1242' => 'eca', 'EL10Ac8g20071' => 'bvu', 'EL10Ac9g21086' => 'bvu', 'EL10Ac9g22407' => 'bvu', 'EL10Ac9g22412' => 'bvu', 'Eucgr.A01119' => 'egr', 'Eucgr.E04043' => 'egr', 'Eucgr.J00428' => 'egr', 'Eucgr.J00958' => 'egr', 'FAN11G3091' => 'fan', 'FAN11G3651' => 'fan', 'FAN16G2566' => 'fan', 'FAN21G3155' => 'fan', 'FAN21G3400' => 'fan', 'FAN21G3543' => 'fan', 'FAN25G0234' => 'fan', 'FAN25G1422' => 'fan', 'FAN25G3392' => 'fan', 'FvH4_3g01940' => 'fve', 'FvH4_3g29870' => 'fve', 'FvH4_3g33680' => 'fve', 'Glyma.09G004200' => 'gma', 'Glyma.11G151288' => 'gma', 'Glyma.11G189100' => 'gma', 'Glyma.12G072500' => 'gma', 'Glyma.12G085500' => 'gma', 'Glyma.12G181800' => 'gma', 'Glyma.12G193000' => 'gma', 'Glyma.13G309300' => 'gma', 'Glyma.13G319000' => 'gma', 'Glyma.17G012600' => 'gma', 'Gohir.A06G148600' => 'ghi', 'Gohir.A07G115800' => 'ghi', 'Gohir.A08G003600' => 'ghi', 'Gohir.A09G093300' => 'ghi', 'Gohir.A09G105400' => 'ghi', 'Gohir.A09G105500' => 'ghi', 'Gohir.D06G154600' => 'ghi', 'Gohir.D07G120200' => 'ghi', 'Gohir.D08G013900' => 'ghi', 'Gohir.D09G093100' => 'ghi', 'Gohir.D09G102200' => 'ghi', 'Gohir.D09G102300' => 'ghi', 'Gorai.001G129400' => 'gra', 'Gorai.004G008200' => 'gra', 'Gorai.006G109800' => 'gra', 'Gorai.006G119500' => 'gra', 'Gorai.006G121300' => 'gra', 'Gorai.010G180700' => 'gra', 'GSVIVG01012716001' => 'vvi', 'GSVIVG01025118001' => 'vvi', 'GSVIVG01030439001' => 'vvi', 'GSVIVG01031397001' => 'vvi', 'HanXRQChr01g0004201' => 'han', 'HanXRQChr02g0054941' => 'han', 'HanXRQChr05g0141811' => 'han', 'HanXRQChr07g0197751' => 'han', 'HanXRQChr11g0346691' => 'han', 'HanXRQChr13g0396971' => 'han', 'HanXRQChr14g0432951' => 'han', 'HanXRQChr14g0452001' => 'han', 'HanXRQChr15g0496681' => 'han', 'HanXRQChr17g0557491' => 'han', 'HanXRQChr17g0557501' => 'han', 'Haze_06809' => 'cav', 'Haze_12852' => 'cav', 'Haze_15850' => 'cav', 'Haze_23446' => 'cav', 'Haze_23942' => 'cav', 'Haze_23943' => 'cav', 'Hma1.2p1_0091F.1_g046450' => 'hma', 'Hma1.2p1_0128F.1_g059910' => 'hma', 'Hma1.2p1_0249F.1_g102260' => 'hma', 'Hma1.2p1_0453F.1_g156190' => 'hma', 'Hma1.2p1_0695F.1_g204380' => 'hma', 'Hma1.2p1_0749F.1_g212650' => 'hma', 'Hma1.2p1_2156F.1_g315420' => 'hma', 'Hma1.2p1_2686F.1_g326940' => 'hma', 'HPP92_006428' => 'vpl', 'HPP92_012069' => 'vpl', 'HPP92_014129' => 'vpl', 'HPP92_014133' => 'vpl', 'HPP92_017315' => 'vpl', 'HPP92_026445' => 'vpl', 'HPP92_026446' => 'vpl', 'Hund00774' => 'sun', 'Hund07682' => 'sun', 'Hund21413' => 'sun', 'Hund23462' => 'sun', 'Hund23463' => 'sun', 'Lalb_Chr03g0027911' => 'lal', 'Lalb_Chr13g0304271' => 'lal', 'Lalb_Chr19g0137471' => 'lal', 'Lalb_Chr22g0350651' => 'lal', 'Lalb_Chr24g0395151' => 'lal', 'Lj1A1231T40' => 'lonja', 'Lj1A221T48' => 'lonja', 'Lj1C924T12' => 'lonja', 'Lj2C993G6' => 'lonja', 'Lj3g0005790' => 'lja', 'Lj3g0015432' => 'lja', 'Lj3g0017722' => 'lja', 'Lj3g0018497' => 'lja', 'Lj4g0025071' => 'lja', 'Lsat_1_v5_gn_1_129680' => 'lsa', 'Lsat_1_v5_gn_2_25321' => 'lsa', 'Lsat_1_v5_gn_2_95461' => 'lsa', 'Lsat_1_v5_gn_4_159620' => 'lsa', 'Lsat_1_v5_gn_6_41301' => 'lsa', 'Lsat_1_v5_gn_6_74660' => 'lsa', 'Lsat_1_v5_gn_7_11520' => 'lsa', 'Lsat_1_v5_gn_9_67680' => 'lsa', 'Manes.04G008300' => 'mes', 'Manes.04G008400' => 'mes', 'Manes.04G026500' => 'mes', 'Manes.10G135300' => 'mes', 'Manes.11G157300' => 'mes', 'Manes.12G074000' => 'mes', 'Manes.16G006200' => 'mes', 'Manes.17G026400' => 'mes', 'Mapoly0024s0086' => 'mpo', 'Mapoly0024s0087' => 'mpo', 'Mapoly0071s0057' => 'mpo', 'Mapoly0204s0012' => 'mpo', 'MBI04_g37681_MAGBIO' => 'mbi', 'MBI05_g17779_MAGBIO' => 'mbi', 'MBI12_g31184_MAGBIO' => 'mbi', 'MBI17_g11083_MAGBIO' => 'mbi', 'MBI18_g03883_MAGBIO' => 'mbi', 'MBI18_g28940_MAGBIO' => 'mbi', 'MCO01G690' => 'mco', 'MD03G1109900' => 'mdo', 'MD03G1134800' => 'mdo', 'MD05G1348000' => 'mdo', 'MD10G1322400' => 'mdo', 'MD11G1123300' => 'mdo', 'MD11G1157600' => 'mdo', 'Medtr2g084875' => 'mtr', 'Medtr2g088130' => 'mtr', 'Medtr4g055310' => 'mtr', 'Medtr4g061070' => 'mtr', 'Medtr4g132250' => 'mtr', 'MELO3C004795.2' => 'cme', 'MELO3C004797.2' => 'cme', 'MELO3C007396.2' => 'cme', 'MELO3C019277.2' => 'cme', 'MELO3C021449.2' => 'cme', 'MELO3C025736.2' => 'cme', 'Migut.D02175' => 'egut', 'Migut.H01573' => 'egut', 'Migut.M01327' => 'egut', 'Migut.N02513' => 'egut', 'MSTRG.14638' => 'ama', 'MSTRG.18632' => 'ama', 'MSTRG.7203' => 'ama', 'Nitab4.5_0000533g0140' => 'nta', 'Nitab4.5_0000888g0150' => 'nta', 'Nitab4.5_0001453g0040' => 'nta', 'Nitab4.5_0002827g0090' => 'nta', 'Nitab4.5_0003082g0040' => 'nta', 'Nitab4.5_0007799g0040' => 'nta', 'Nitab4.5_0008983g0010' => 'nta', 'Nitab4.5_0009017g0020' => 'nta', 'Nn1g02132' => 'nnu', 'Nn1g03492' => 'nnu', 'Nn1g03493' => 'nnu', 'Nn1g03494' => 'nnu', 'Nn1g07164' => 'nnu', 'Nn1g07291' => 'nnu', 'Nn2g10655' => 'nnu', 'Nn2g11652' => 'nnu', 'Nn2g14008' => 'nnu', 'Nn3g17476' => 'nnu', 'Nn3g17477' => 'nnu', 'Nn4g22370' => 'nnu', 'Nn4g25255' => 'nnu', 'Nn5g27755' => 'nnu', 'Nn6g34260' => 'nnu', 'Nn6g35041' => 'nnu', 'Oeu005924.1' => 'oeu', 'Oeu008383.1' => 'oeu', 'Oeu014928.1' => 'oeu', 'Oeu019889.1' => 'oeu', 'Oeu022271.1' => 'oeu', 'Oeu025271.1' => 'oeu', 'Oeu036302.1' => 'oeu', 'Oeu044100.1' => 'oeu', 'Os01g0528300' => 'osa', 'Os03g0286200' => 'osa', 'Os04g0406600' => 'osa', 'Os07g0512000' => 'osa', 'Os07g0694600' => 'osa', 'Os08g0411000' => 'osa', 'Os09g0565700' => 'osa', 'Os09g0566050' => 'osa', 'Os10g0523700' => 'osa', 'Peaxi162Scf00002g00514' => 'pax', 'Peaxi162Scf00047g01817' => 'pax', 'Peaxi162Scf00114g00001' => 'pax', 'Peaxi162Scf00147g00613' => 'pax', 'Peaxi162Scf00389g00425' => 'pax', 'PGR042G1139' => 'pgr', 'PGR042G3273' => 'pgr', 'PGR102G2180' => 'pgr', 'PGR119G0234' => 'pgr', 'PGR119G0668' => 'pgr', 'PGSC0003DMG400007122' => 'stu', 'PGSC0003DMG400016478' => 'stu', 'PGSC0003DMG400025374' => 'stu', 'PGSC0003DMG400026536' => 'stu', 'Phvul.003G079600' => 'pvu', 'Phvul.005G115600' => 'pvu', 'Phvul.005G127100' => 'pvu', 'Phvul.006G149500' => 'pvu', 'Phvul.006G149600' => 'pvu', 'Phvul.011G071800' => 'pvu', 'Phvul.011G090400' => 'pvu', 'Potri.004G013400' => 'ptr', 'Potri.004G188100' => 'ptr', 'Potri.008G195500' => 'ptr', 'Potri.009G148800' => 'ptr', 'Potri.011G004700' => 'ptr', 'Pp3c17_22810' => 'ppa', 'Pp3c18_4480' => 'ppa', 'Pp3c19_13030' => 'ppa', 'Pp3c1_33620' => 'ppa', 'Pp3c2_9380' => 'ppa', 'PRCOL_00001023' => 'pco', 'Prupe.3G216300' => 'ppe', 'Prupe.4G019500' => 'ppe', 'Prupe.6G092500' => 'ppe', 'Prupe.6G119200' => 'ppe', 'Psat0s1945g0080' => 'psa', 'Psat0s4167g0040' => 'psa', 'Psat1g185800' => 'psa', 'Psat4g006440' => 'psa', 'Psat4g006480' => 'psa', 'Psat4g168120' => 'psa', 'Psat5g255680' => 'psa', 'Psat5g261760' => 'psa', 'Psat7g222120' => 'psa', 'PSO063G7252' => 'pso', 'PSO170G4778' => 'pso', 'PSO210G2249' => 'pso', 'PSO339G2411' => 'pso', 'PSO339G2457' => 'pso', 'PSO339G2854' => 'pso', 'PSO339G4288' => 'pso', 'PSO339G4615' => 'pso', 'PSO384G2796' => 'pso', 'PSO384G2940' => 'pso', 'PSO384G4227' => 'pso', 'PSO478G1425' => 'pso', 'PSO541G3863' => 'pso', 'PSO675G0507' => 'pso', 'PSO782G0338' => 'pso', 'PSO832G0644' => 'pso', 'QL01p013664' => 'qlo', 'QL01p036598' => 'qlo', 'QL05p072984' => 'qlo', 'QL08p005768' => 'qlo', 'QL08p032743' => 'qlo', 'QL93p0073_0439' => 'qlo', 'QL93p0073_0444' => 'qlo', 'RcHm_v2.0_Chr5g0002851' => 'rch', 'RcHm_v2.0_Chr5g0055201' => 'rch', 'RcHm_v2.0_Chr5g0061191' => 'rch', 'RcHm_v2.0_Chr7g0203231' => 'rch', 'Rhsim01G0208100' => 'rsi', 'Rhsim01G0208200' => 'rsi', 'Rhsim02G0106500' => 'rsi', 'Rhsim03G0107900' => 'rsi', 'Rhsim06G0163400' => 'rsi', 'Rhsim13G0105200' => 'rsi', 'Sabra04G0006300' => 'sbr', 'Sabra04G0127000' => 'sbr', 'Sabra08G0148700' => 'sbr', 'Sabra09G0117400' => 'sbr', 'SalBow1G3326' => 'sbo', 'SalBow3G3228' => 'sbo', 'SalBow6G1634' => 'sbo', 'SalBow6G3603' => 'sbo', 'SalBow6G5266' => 'sbo', 'SalBow7G2265' => 'sbo', 'SalBow8G0850' => 'sbo', 'SalBow8G2592' => 'sbo', 'Sc05g0009240' => 'sci', 'Sc12g0002300' => 'sci', 'Sc21g0000100' => 'sci', 'Sc21g0004720' => 'sci', 'Sed0002949' => 'sed', 'Sed0004114' => 'sed', 'Sed0004306' => 'sed', 'Sed0006172' => 'sed', 'Sed0008413' => 'sed', 'Sed0013809' => 'sed', 'Sed0019556' => 'sed', 'SEGI_03570' => 'sgi', 'SEGI_07859' => 'sgi', 'SEGI_15042' => 'sgi', 'SEGI_16263' => 'sgi', 'SEGI_16552' => 'sgi', 'SEGI_24331' => 'sgi', 'SEGI_27316' => 'sgi', 'SEGI_29521' => 'sgi', 'SEGI_41342' => 'sgi', 'SGA_v2.0_scaffold27G11617' => 'sas', 'SGA_v2.0_scaffold316G48428' => 'sas', 'SGA_v2.0_scaffold49G18261' => 'sas', 'SGA_v2.0_scaffold7G03831' => 'sas', 'SGA_v2.0_scaffold93G28359' => 'sas', 'SHI02210' => 'shi', 'SHI06028' => 'shi', 'SHI06321' => 'shi', 'SMO111G0012' => 'smo', 'SMO228G0080' => 'smo', 'SMO356G0756' => 'smo', 'Solyc02g080620.3' => 'sly', 'Solyc06g074530.1' => 'sly', 'Solyc11g066890.1' => 'sly', 'Solyc11g072520.3' => 'sly', 'Sopen02g025330' => 'spe', 'Sopen06g031000' => 'spe', 'Sopen09g008240' => 'spe', 'Sopen09g025210' => 'spe', 'Sopen11g026600' => 'spe', 'Sopen11g030170' => 'spe', 'Sp1g10420' => 'spa', 'Sp3g06570' => 'spa', 'Sp4g10660' => 'spa', 'Sp5g16460' => 'spa', 'Sp6g22710' => 'spa', 'TAR365G0112' => 'tar', 'TAR369G0717' => 'tar', 'TAR374G0976' => 'tar', 'TAR623G1128' => 'tar', 'TAR626G1937' => 'tar', 'TAR627G0123' => 'tar', 'TAR628G0305' => 'tar', 'TAR636G1176' => 'tar', 'TAR636G2442' => 'tar', 'THA.LOC104800556' => 'tha', 'THA.LOC104809501' => 'tha', 'THA.LOC104815126' => 'tha', 'THA.LOC104815732' => 'tha', 'THA.LOC104823528' => 'tha', 'Thecc.02G365600' => 'tca', 'Thecc.06G222300' => 'tca', 'Thecc.09G261800' => 'tca', 'Thecc.09G291400' => 'tca', 'Thhalv10003028m.g' => 'esa', 'Thhalv10007886m.g' => 'esa', 'Thhalv10016085m.g' => 'esa', 'Thhalv10016681m.g' => 'esa', 'Thhalv10020951m.g' => 'esa', 'TPR.G15598' => 'tpr', 'TPR.G29305' => 'tpr', 'TPR.G32395' => 'tpr', 'TPR.G36998' => 'tpr', 'TPR.G4227' => 'tpr', 'TWI18G1433' => 'twi', 'TWI31G0755' => 'twi', 'TWI38G0912' => 'twi', 'TWI75G1097' => 'twi', 'TWI75G1619' => 'twi', 'TWI79G1336' => 'twi', 'unitig_0.g943' => 'ugi', 'unitig_0.g944' => 'ugi', 'unitig_22.g6646' => 'ugi', 'unitig_37.g12681' => 'ugi', 'unitig_8.g3290' => 'ugi', 'vmacro03278' => 'vma', 'vmacro12197' => 'vma', 'vmacro14478' => 'vma', 'vmacro15787' => 'vma', 'vmacro15789' => 'vma', 'vmacro15790' => 'vma', 'vmacro15806' => 'vma', 'vmacro22907' => 'vma', 'vmacro22908' => 'vma', 'vmacro22909' => 'vma', 'vmacro23108' => 'vma', 'VMungo0540G0540' => 'vmu', 'VMungo0540G2468' => 'vmu', 'VMungo1080G0390' => 'vmu', 'VMungo1080G1165' => 'vmu', 'VMungo1127G0170' => 'vmu', 'VMungo1127G2099' => 'vmu', 'VMungo1215G3013' => 'vmu', 'Zm00001eb013110' => 'zma', 'Zm00001eb084260' => 'zma', 'Zm00001eb096110' => 'zma', 'Zm00001eb217510' => 'zma', 'Zm00001eb322550' => 'zma', 'Zm00001eb390770' => 'zma', 'Zm00001eb397170' => 'zma', 'Zm00001eb404610' => 'zma', 'Zm00001eb421790' => 'zma' ), 'gf_id' => 'HOM05D000911', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000911' ), 'data_identifier' => 'HOM05D000911', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000911', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27780' => 'bna', 'A03p35380' => 'bna', 'A04p21160' => 'bna', 'A05p40570' => 'bna', 'A06p26900' => 'bna', 'A08p33230' => 'bna', 'A09p65960' => 'bna', 'A10p18290' => 'bna', 'Aa31LG1G12990' => 'aar', 'Aa31LG1G2980' => 'aar', 'Aa31LG4G14320' => 'aar', 'Aa31LG7G11800' => 'aar', 'Aa31sc36G50' => 'aar', 'Aa31sc36G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3721' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5459' => 'aag', 'Actinidia03028' => 'ach', 'Actinidia03753' => 'ach', 'Actinidia04187' => 'ach', 'Actinidia05509' => 'ach', 'Actinidia24180' => 'ach', 'Actinidia26906' => 'ach', 'Actinidia37097' => 'ach', 'Actinidia38249' => 'ach', 'Ah.01g003470' => 'amhyb', 'Ah.01g004580' => 'amhyb', 'Ah.01g014850' => 'amhyb', 'Ah.01g016830' => 'amhyb', 'Ah.14g088000' => 'amhyb', 'AL1G22980' => 'aly', 'AL3G18990' => 'aly', 'AL4G22440' => 'aly', 'AL4G33180' => 'aly', 'AL5G22920' => 'aly', 'AL6G33660' => 'aly', 'AL8G20720' => 'aly', 'Aqoxy1G00935' => 'aox', 'Aqoxy1G02094' => 'aox', 'Aqoxy2G01239' => 'aox', 'Aqoxy4G01870' => 'aox', 'Aqoxy7G00450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.36ZVTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71EM27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5D6C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH3WRE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3NCM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RIM768' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YB5YRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z36GDV' => 'arhy', 'AT1G08250' => 'ath', 'AT1G11790' => 'ath', 'AT2G27820' => 'ath', 'AT3G07630' => 'ath', 'AT3G44720' => 'ath', 'AT5G22630' => 'ath', 'ATR0693G304' => 'atr', 'ATR0794G109' => 'atr', 'ATR0820G120' => 'atr', 'ATR1159G064' => 'atr', 'Atru.chr10.2239' => 'acertr', 'Atru.chr3.3371' => 'acertr', 'Atru.chr6.3202' => 'acertr', 'AUR62006499' => 'cqu', 'AUR62012718' => 'cqu', 'AUR62021938' => 'cqu', 'AUR62023932' => 'cqu', 'AUR62025034' => 'cqu', 'AUR62025035' => 'cqu', 'AUR62038307' => 'cqu', 'AUR62043466' => 'cqu', 'BcaB02g10748' => 'bca', 'BcaB03g13231' => 'bca', 'BcaB03g14689' => 'bca', 'BcaB05g22716' => 'bca', 'BcaB06g28172' => 'bca', 'BcaB08g36413' => 'bca', 'BcaC01g02186' => 'bca', 'BcaC01g04272' => 'bca', 'BcaC02g08080' => 'bca', 'BcaC02g08227' => 'bca', 'BcaC03g13901' => 'bca', 'BcaC04g19593' => 'bca', 'BcaC04g20874' => 'bca', 'BcaC05g29557' => 'bca', 'BcaC06g35505' => 'bca', 'BcaC07g41954' => 'bca', 'BcaC07g41955' => 'bca', 'BcaC07g41956' => 'bca', 'BcaC07g42519' => 'bca', 'BcaC07g42520' => 'bca', 'BcaC07g42523' => 'bca', 'BcaC07g42524' => 'bca', 'BcaC07g42525' => 'bca', 'BcaC08g47480' => 'bca', 'BcaC08g47481' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00530' => 'bna', 'BolC2t07178H' => 'bol', 'BolC3t16567H' => 'bol', 'BolC4t27234H' => 'bol', 'BolC5t29728H' => 'bol', 'BolC5t34622H' => 'bol', 'BolC6t40321H' => 'bol', 'BolC7t42028H' => 'bol', 'BolC8t49125H' => 'bol', 'BolC8t52538H' => 'bol', 'BolC8t52539H' => 'bol', 'BolC9t56681H' => 'bol', 'BolC9t58266H' => 'bol', 'BolSC21t60294H' => 'bol', 'BraA02t05670Z' => 'bra', 'BraA03t12716Z' => 'bra', 'BraA04t17685Z' => 'bra', 'BraA05t22788Z' => 'bra', 'BraA06t24032Z' => 'bra', 'BraA06t25625Z' => 'bra', 'BraA07t27930Z' => 'bra', 'BraA08t35242Z' => 'bra', 'BraA09t38609Z' => 'bra', 'BraA10t43905Z' => 'bra', 'C02p11060' => 'bna', 'C03p42990' => 'bna', 'C03p67310' => 'bna', 'C04p56990' => 'bna', 'C04p58660' => 'bna', 'C05p09890' => 'bna', 'C05p59680' => 'bna', 'C06p19830' => 'bna', 'C06p53040' => 'bna', 'C07p15230' => 'bna', 'C08p50070' => 'bna', 'C08p50090' => 'bna', 'C09p38330' => 'bna', 'C09p53940' => 'bna', 'CAN.G1014.1' => 'can', 'CAN.G644.30' => 'can', 'CAN.G84.47' => 'can', 'CAN.G919.8' => 'can', 'CANSAT54G0113' => 'cansat', 'CANSAT54G1286' => 'cansat', 'CANSAT64G1020' => 'cansat', 'CARHR008080' => 'chi', 'CARHR008090' => 'chi', 'CARHR012130' => 'chi', 'CARHR038390' => 'chi', 'CARHR082330' => 'chi', 'CARHR120520' => 'chi', 'CARHR151470' => 'chi', 'CARHR190950' => 'chi', 'Carub.0001s0760' => 'cru', 'Carub.0001s1146' => 'cru', 'Carub.0003s0721' => 'cru', 'Carub.0004s0858' => 'cru', 'Carub.0005s1040' => 'cru', 'Carub.0006s2035' => 'cru', 'Carub.0015s0005' => 'cru', 'Ca_01607_v3' => 'car', 'Ca_01677_v3' => 'car', 'Ca_06087_v3' => 'car', 'Ca_19238_v3' => 'car', 'Ca_19373_v3' => 'car', 'Ca_21079_v3' => 'car', 'CBR_g54016' => 'cbr', 'CBR_g54018' => 'cbr', 'CBR_g54020' => 'cbr', 'Cc01_g09780' => 'ccan', 'Cc01_g11680' => 'ccan', 'Cc02_g15610' => 'ccan', 'Cc05_g04350' => 'ccan', 'Cc09_g01580' => 'ccan', 'CDE01G0795' => 'cde', 'CDE02G2024' => 'cde', 'CDE02G2260' => 'cde', 'CDE02G4561' => 'cde', 'CDE05G2733' => 'cde', 'CDE05G3422' => 'cde', 'CDE06G2003' => 'cde', 'CDE08G0576' => 'cde', 'CDE09G0048' => 'cde', 'CDE11G0805' => 'cde', 'Cfa003644' => 'cfa', 'Cfa006290' => 'cfa', 'Cfa010080' => 'cfa', 'Cfa011376' => 'cfa', 'Cfa011576' => 'cfa', 'Cfa011577' => 'cfa', 'Cfa014389' => 'cfa', 'Ciclev10006044m.g' => 'ccl', 'Ciclev10006954m.g' => 'ccl', 'Ciclev10015131m.g' => 'ccl', 'Ciclev10015580m.g' => 'ccl', 'Ciclev10028359m.g' => 'ccl', 'Ciclev10028573m.g' => 'ccl', 'CiPaw.03G159300' => 'cil', 'CiPaw.04G115100' => 'cil', 'CiPaw.09G092800' => 'cil', 'CiPaw.10G071800' => 'cil', 'CiPaw.13G105800' => 'cil', 'CiPaw.13G141000' => 'cil', 'CiPaw.14G103400' => 'cil', 'ClCG01G012700' => 'cla', 'ClCG01G012720' => 'cla', 'ClCG01G021920' => 'cla', 'ClCG02G008870' => 'cla', 'ClCG02G020840' => 'cla', 'ClCG02G021930' => 'cla', 'COL.COLO4_19302' => 'col', 'COL.COLO4_25262' => 'col', 'COL.COLO4_31788' => 'col', 'Cpa.g.c34684' => 'cpa', 'Cpa.g.c36520.1' => 'cpa', 'Cpa.g.c45626' => 'cpa', 'Cpa.g.sc121.17' => 'cpa', 'Cpa.g.sc13.22' => 'cpa', 'Cpa.g.sc87.88' => 'cpa', 'Cre06.g261800' => 'cre', 'CsaV3_1G014500' => 'csa', 'CsaV3_1G014510' => 'csa', 'CsaV3_2G034880' => 'csa', 'CsaV3_6G014760' => 'csa', 'CsaV3_6G021500' => 'csa', 'CsaV3_6G048980' => 'csa', 'CSS0002511' => 'camsi', 'CSS0007556' => 'camsi', 'CSS0008532' => 'camsi', 'CSS0009709' => 'camsi', 'CSS0010486' => 'camsi', 'CSS0016768' => 'camsi', 'CSS0023512' => 'camsi', 'CSS0025341' => 'camsi', 'CSS0027999' => 'camsi', 'CSS0028944' => 'camsi', 'CSS0032292' => 'camsi', 'CSS0032464' => 'camsi', 'CSS0037153' => 'camsi', 'CSS0039256' => 'camsi', 'CSS0048392' => 'camsi', 'CSS0050458' => 'camsi', 'DCAR_004224' => 'dca', 'DCAR_006147' => 'dca', 'DCAR_006465' => 'dca', 'DCAR_008159' => 'dca', 'DCAR_012164' => 'dca', 'DCAR_019764' => 'dca', 'Dinv05418' => 'din', 'Dinv10839' => 'din', 'Dinv12521' => 'din', 'Dinv13900' => 'din', 'Dinv29426' => 'din', 'Duzib150G0263' => 'dzi', 'Duzib168G1178' => 'dzi', 'Duzib168G1924' => 'dzi', 'Duzib170G0299' => 'dzi', 'Duzib170G0813' => 'dzi', 'Duzib235G1128' => 'dzi', 'Duzib248G1060' => 'dzi', 'ECA232G1910' => 'eca', 'ECA233G4621' => 'eca', 'ECA238G1216' => 'eca', 'ECA238G1784' => 'eca', 'ECA248G1242' => 'eca', 'EL10Ac8g20071' => 'bvu', 'EL10Ac9g21086' => 'bvu', 'EL10Ac9g22407' => 'bvu', 'EL10Ac9g22412' => 'bvu', 'Eucgr.A01119' => 'egr', 'Eucgr.E04043' => 'egr', 'Eucgr.J00428' => 'egr', 'Eucgr.J00958' => 'egr', 'FAN11G3091' => 'fan', 'FAN11G3651' => 'fan', 'FAN16G2566' => 'fan', 'FAN21G3155' => 'fan', 'FAN21G3400' => 'fan', 'FAN21G3543' => 'fan', 'FAN25G0234' => 'fan', 'FAN25G1422' => 'fan', 'FAN25G3392' => 'fan', 'FvH4_3g01940' => 'fve', 'FvH4_3g29870' => 'fve', 'FvH4_3g33680' => 'fve', 'Glyma.09G004200' => 'gma', 'Glyma.11G151288' => 'gma', 'Glyma.11G189100' => 'gma', 'Glyma.12G072500' => 'gma', 'Glyma.12G085500' => 'gma', 'Glyma.12G181800' => 'gma', 'Glyma.12G193000' => 'gma', 'Glyma.13G309300' => 'gma', 'Glyma.13G319000' => 'gma', 'Glyma.17G012600' => 'gma', 'Gohir.A06G148600' => 'ghi', 'Gohir.A07G115800' => 'ghi', 'Gohir.A08G003600' => 'ghi', 'Gohir.A09G093300' => 'ghi', 'Gohir.A09G105400' => 'ghi', 'Gohir.A09G105500' => 'ghi', 'Gohir.D06G154600' => 'ghi', 'Gohir.D07G120200' => 'ghi', 'Gohir.D08G013900' => 'ghi', 'Gohir.D09G093100' => 'ghi', 'Gohir.D09G102200' => 'ghi', 'Gohir.D09G102300' => 'ghi', 'Gorai.001G129400' => 'gra', 'Gorai.004G008200' => 'gra', 'Gorai.006G109800' => 'gra', 'Gorai.006G119500' => 'gra', 'Gorai.006G121300' => 'gra', 'Gorai.010G180700' => 'gra', 'GSVIVG01012716001' => 'vvi', 'GSVIVG01025118001' => 'vvi', 'GSVIVG01030439001' => 'vvi', 'GSVIVG01031397001' => 'vvi', 'HanXRQChr01g0004201' => 'han', 'HanXRQChr02g0054941' => 'han', 'HanXRQChr05g0141811' => 'han', 'HanXRQChr07g0197751' => 'han', 'HanXRQChr11g0346691' => 'han', 'HanXRQChr13g0396971' => 'han', 'HanXRQChr14g0432951' => 'han', 'HanXRQChr14g0452001' => 'han', 'HanXRQChr15g0496681' => 'han', 'HanXRQChr17g0557491' => 'han', 'HanXRQChr17g0557501' => 'han', 'Haze_06809' => 'cav', 'Haze_12852' => 'cav', 'Haze_15850' => 'cav', 'Haze_23446' => 'cav', 'Haze_23942' => 'cav', 'Haze_23943' => 'cav', 'Hma1.2p1_0091F.1_g046450' => 'hma', 'Hma1.2p1_0128F.1_g059910' => 'hma', 'Hma1.2p1_0249F.1_g102260' => 'hma', 'Hma1.2p1_0453F.1_g156190' => 'hma', 'Hma1.2p1_0695F.1_g204380' => 'hma', 'Hma1.2p1_0749F.1_g212650' => 'hma', 'Hma1.2p1_2156F.1_g315420' => 'hma', 'Hma1.2p1_2686F.1_g326940' => 'hma', 'HPP92_006428' => 'vpl', 'HPP92_012069' => 'vpl', 'HPP92_014129' => 'vpl', 'HPP92_014133' => 'vpl', 'HPP92_017315' => 'vpl', 'HPP92_026445' => 'vpl', 'HPP92_026446' => 'vpl', 'Hund00774' => 'sun', 'Hund07682' => 'sun', 'Hund21413' => 'sun', 'Hund23462' => 'sun', 'Hund23463' => 'sun', 'Lalb_Chr03g0027911' => 'lal', 'Lalb_Chr13g0304271' => 'lal', 'Lalb_Chr19g0137471' => 'lal', 'Lalb_Chr22g0350651' => 'lal', 'Lalb_Chr24g0395151' => 'lal', 'Lj1A1231T40' => 'lonja', 'Lj1A221T48' => 'lonja', 'Lj1C924T12' => 'lonja', 'Lj2C993G6' => 'lonja', 'Lj3g0005790' => 'lja', 'Lj3g0015432' => 'lja', 'Lj3g0017722' => 'lja', 'Lj3g0018497' => 'lja', 'Lj4g0025071' => 'lja', 'Lsat_1_v5_gn_1_129680' => 'lsa', 'Lsat_1_v5_gn_2_25321' => 'lsa', 'Lsat_1_v5_gn_2_95461' => 'lsa', 'Lsat_1_v5_gn_4_159620' => 'lsa', 'Lsat_1_v5_gn_6_41301' => 'lsa', 'Lsat_1_v5_gn_6_74660' => 'lsa', 'Lsat_1_v5_gn_7_11520' => 'lsa', 'Lsat_1_v5_gn_9_67680' => 'lsa', 'Manes.04G008300' => 'mes', 'Manes.04G008400' => 'mes', 'Manes.04G026500' => 'mes', 'Manes.10G135300' => 'mes', 'Manes.11G157300' => 'mes', 'Manes.12G074000' => 'mes', 'Manes.16G006200' => 'mes', 'Manes.17G026400' => 'mes', 'Mapoly0024s0086' => 'mpo', 'Mapoly0024s0087' => 'mpo', 'Mapoly0071s0057' => 'mpo', 'Mapoly0204s0012' => 'mpo', 'MBI04_g37681_MAGBIO' => 'mbi', 'MBI05_g17779_MAGBIO' => 'mbi', 'MBI12_g31184_MAGBIO' => 'mbi', 'MBI17_g11083_MAGBIO' => 'mbi', 'MBI18_g03883_MAGBIO' => 'mbi', 'MBI18_g28940_MAGBIO' => 'mbi', 'MCO01G690' => 'mco', 'MD03G1109900' => 'mdo', 'MD03G1134800' => 'mdo', 'MD05G1348000' => 'mdo', 'MD10G1322400' => 'mdo', 'MD11G1123300' => 'mdo', 'MD11G1157600' => 'mdo', 'Medtr2g084875' => 'mtr', 'Medtr2g088130' => 'mtr', 'Medtr4g055310' => 'mtr', 'Medtr4g061070' => 'mtr', 'Medtr4g132250' => 'mtr', 'MELO3C004795.2' => 'cme', 'MELO3C004797.2' => 'cme', 'MELO3C007396.2' => 'cme', 'MELO3C019277.2' => 'cme', 'MELO3C021449.2' => 'cme', 'MELO3C025736.2' => 'cme', 'Migut.D02175' => 'egut', 'Migut.H01573' => 'egut', 'Migut.M01327' => 'egut', 'Migut.N02513' => 'egut', 'MSTRG.14638' => 'ama', 'MSTRG.18632' => 'ama', 'MSTRG.7203' => 'ama', 'Nitab4.5_0000533g0140' => 'nta', 'Nitab4.5_0000888g0150' => 'nta', 'Nitab4.5_0001453g0040' => 'nta', 'Nitab4.5_0002827g0090' => 'nta', 'Nitab4.5_0003082g0040' => 'nta', 'Nitab4.5_0007799g0040' => 'nta', 'Nitab4.5_0008983g0010' => 'nta', 'Nitab4.5_0009017g0020' => 'nta', 'Nn1g02132' => 'nnu', 'Nn1g03492' => 'nnu', 'Nn1g03493' => 'nnu', 'Nn1g03494' => 'nnu', 'Nn1g07164' => 'nnu', 'Nn1g07291' => 'nnu', 'Nn2g10655' => 'nnu', 'Nn2g11652' => 'nnu', 'Nn2g14008' => 'nnu', 'Nn3g17476' => 'nnu', 'Nn3g17477' => 'nnu', 'Nn4g22370' => 'nnu', 'Nn4g25255' => 'nnu', 'Nn5g27755' => 'nnu', 'Nn6g34260' => 'nnu', 'Nn6g35041' => 'nnu', 'Oeu005924.1' => 'oeu', 'Oeu008383.1' => 'oeu', 'Oeu014928.1' => 'oeu', 'Oeu019889.1' => 'oeu', 'Oeu022271.1' => 'oeu', 'Oeu025271.1' => 'oeu', 'Oeu036302.1' => 'oeu', 'Oeu044100.1' => 'oeu', 'Os01g0528300' => 'osa', 'Os03g0286200' => 'osa', 'Os04g0406600' => 'osa', 'Os07g0512000' => 'osa', 'Os07g0694600' => 'osa', 'Os08g0411000' => 'osa', 'Os09g0565700' => 'osa', 'Os09g0566050' => 'osa', 'Os10g0523700' => 'osa', 'Peaxi162Scf00002g00514' => 'pax', 'Peaxi162Scf00047g01817' => 'pax', 'Peaxi162Scf00114g00001' => 'pax', 'Peaxi162Scf00147g00613' => 'pax', 'Peaxi162Scf00389g00425' => 'pax', 'PGR042G1139' => 'pgr', 'PGR042G3273' => 'pgr', 'PGR102G2180' => 'pgr', 'PGR119G0234' => 'pgr', 'PGR119G0668' => 'pgr', 'PGSC0003DMG400007122' => 'stu', 'PGSC0003DMG400016478' => 'stu', 'PGSC0003DMG400025374' => 'stu', 'PGSC0003DMG400026536' => 'stu', 'Phvul.003G079600' => 'pvu', 'Phvul.005G115600' => 'pvu', 'Phvul.005G127100' => 'pvu', 'Phvul.006G149500' => 'pvu', 'Phvul.006G149600' => 'pvu', 'Phvul.011G071800' => 'pvu', 'Phvul.011G090400' => 'pvu', 'Potri.004G013400' => 'ptr', 'Potri.004G188100' => 'ptr', 'Potri.008G195500' => 'ptr', 'Potri.009G148800' => 'ptr', 'Potri.011G004700' => 'ptr', 'Pp3c17_22810' => 'ppa', 'Pp3c18_4480' => 'ppa', 'Pp3c19_13030' => 'ppa', 'Pp3c1_33620' => 'ppa', 'Pp3c2_9380' => 'ppa', 'PRCOL_00001023' => 'pco', 'Prupe.3G216300' => 'ppe', 'Prupe.4G019500' => 'ppe', 'Prupe.6G092500' => 'ppe', 'Prupe.6G119200' => 'ppe', 'Psat0s1945g0080' => 'psa', 'Psat0s4167g0040' => 'psa', 'Psat1g185800' => 'psa', 'Psat4g006440' => 'psa', 'Psat4g006480' => 'psa', 'Psat4g168120' => 'psa', 'Psat5g255680' => 'psa', 'Psat5g261760' => 'psa', 'Psat7g222120' => 'psa', 'PSO063G7252' => 'pso', 'PSO170G4778' => 'pso', 'PSO210G2249' => 'pso', 'PSO339G2411' => 'pso', 'PSO339G2457' => 'pso', 'PSO339G2854' => 'pso', 'PSO339G4288' => 'pso', 'PSO339G4615' => 'pso', 'PSO384G2796' => 'pso', 'PSO384G2940' => 'pso', 'PSO384G4227' => 'pso', 'PSO478G1425' => 'pso', 'PSO541G3863' => 'pso', 'PSO675G0507' => 'pso', 'PSO782G0338' => 'pso', 'PSO832G0644' => 'pso', 'QL01p013664' => 'qlo', 'QL01p036598' => 'qlo', 'QL05p072984' => 'qlo', 'QL08p005768' => 'qlo', 'QL08p032743' => 'qlo', 'QL93p0073_0439' => 'qlo', 'QL93p0073_0444' => 'qlo', 'RcHm_v2.0_Chr5g0002851' => 'rch', 'RcHm_v2.0_Chr5g0055201' => 'rch', 'RcHm_v2.0_Chr5g0061191' => 'rch', 'RcHm_v2.0_Chr7g0203231' => 'rch', 'Rhsim01G0208100' => 'rsi', 'Rhsim01G0208200' => 'rsi', 'Rhsim02G0106500' => 'rsi', 'Rhsim03G0107900' => 'rsi', 'Rhsim06G0163400' => 'rsi', 'Rhsim13G0105200' => 'rsi', 'Sabra04G0006300' => 'sbr', 'Sabra04G0127000' => 'sbr', 'Sabra08G0148700' => 'sbr', 'Sabra09G0117400' => 'sbr', 'SalBow1G3326' => 'sbo', 'SalBow3G3228' => 'sbo', 'SalBow6G1634' => 'sbo', 'SalBow6G3603' => 'sbo', 'SalBow6G5266' => 'sbo', 'SalBow7G2265' => 'sbo', 'SalBow8G0850' => 'sbo', 'SalBow8G2592' => 'sbo', 'Sc05g0009240' => 'sci', 'Sc12g0002300' => 'sci', 'Sc21g0000100' => 'sci', 'Sc21g0004720' => 'sci', 'Sed0002949' => 'sed', 'Sed0004114' => 'sed', 'Sed0004306' => 'sed', 'Sed0006172' => 'sed', 'Sed0008413' => 'sed', 'Sed0013809' => 'sed', 'Sed0019556' => 'sed', 'SEGI_03570' => 'sgi', 'SEGI_07859' => 'sgi', 'SEGI_15042' => 'sgi', 'SEGI_16263' => 'sgi', 'SEGI_16552' => 'sgi', 'SEGI_24331' => 'sgi', 'SEGI_27316' => 'sgi', 'SEGI_29521' => 'sgi', 'SEGI_41342' => 'sgi', 'SGA_v2.0_scaffold27G11617' => 'sas', 'SGA_v2.0_scaffold316G48428' => 'sas', 'SGA_v2.0_scaffold49G18261' => 'sas', 'SGA_v2.0_scaffold7G03831' => 'sas', 'SGA_v2.0_scaffold93G28359' => 'sas', 'SHI02210' => 'shi', 'SHI06028' => 'shi', 'SHI06321' => 'shi', 'SMO111G0012' => 'smo', 'SMO228G0080' => 'smo', 'SMO356G0756' => 'smo', 'Solyc02g080620.3' => 'sly', 'Solyc06g074530.1' => 'sly', 'Solyc11g066890.1' => 'sly', 'Solyc11g072520.3' => 'sly', 'Sopen02g025330' => 'spe', 'Sopen06g031000' => 'spe', 'Sopen09g008240' => 'spe', 'Sopen09g025210' => 'spe', 'Sopen11g026600' => 'spe', 'Sopen11g030170' => 'spe', 'Sp1g10420' => 'spa', 'Sp3g06570' => 'spa', 'Sp4g10660' => 'spa', 'Sp5g16460' => 'spa', 'Sp6g22710' => 'spa', 'TAR365G0112' => 'tar', 'TAR369G0717' => 'tar', 'TAR374G0976' => 'tar', 'TAR623G1128' => 'tar', 'TAR626G1937' => 'tar', 'TAR627G0123' => 'tar', 'TAR628G0305' => 'tar', 'TAR636G1176' => 'tar', 'TAR636G2442' => 'tar', 'THA.LOC104800556' => 'tha', 'THA.LOC104809501' => 'tha', 'THA.LOC104815126' => 'tha', 'THA.LOC104815732' => 'tha', 'THA.LOC104823528' => 'tha', 'Thecc.02G365600' => 'tca', 'Thecc.06G222300' => 'tca', 'Thecc.09G261800' => 'tca', 'Thecc.09G291400' => 'tca', 'Thhalv10003028m.g' => 'esa', 'Thhalv10007886m.g' => 'esa', 'Thhalv10016085m.g' => 'esa', 'Thhalv10016681m.g' => 'esa', 'Thhalv10020951m.g' => 'esa', 'TPR.G15598' => 'tpr', 'TPR.G29305' => 'tpr', 'TPR.G32395' => 'tpr', 'TPR.G36998' => 'tpr', 'TPR.G4227' => 'tpr', 'TWI18G1433' => 'twi', 'TWI31G0755' => 'twi', 'TWI38G0912' => 'twi', 'TWI75G1097' => 'twi', 'TWI75G1619' => 'twi', 'TWI79G1336' => 'twi', 'unitig_0.g943' => 'ugi', 'unitig_0.g944' => 'ugi', 'unitig_22.g6646' => 'ugi', 'unitig_37.g12681' => 'ugi', 'unitig_8.g3290' => 'ugi', 'vmacro03278' => 'vma', 'vmacro12197' => 'vma', 'vmacro14478' => 'vma', 'vmacro15787' => 'vma', 'vmacro15789' => 'vma', 'vmacro15790' => 'vma', 'vmacro15806' => 'vma', 'vmacro22907' => 'vma', 'vmacro22908' => 'vma', 'vmacro22909' => 'vma', 'vmacro23108' => 'vma', 'VMungo0540G0540' => 'vmu', 'VMungo0540G2468' => 'vmu', 'VMungo1080G0390' => 'vmu', 'VMungo1080G1165' => 'vmu', 'VMungo1127G0170' => 'vmu', 'VMungo1127G2099' => 'vmu', 'VMungo1215G3013' => 'vmu', 'Zm00001eb013110' => 'zma', 'Zm00001eb084260' => 'zma', 'Zm00001eb096110' => 'zma', 'Zm00001eb217510' => 'zma', 'Zm00001eb322550' => 'zma', 'Zm00001eb390770' => 'zma', 'Zm00001eb397170' => 'zma', 'Zm00001eb404610' => 'zma', 'Zm00001eb421790' => 'zma' ) $gf_id = 'HOM05D000911' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000911' ) $data_identifier = 'HOM05D000911' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 16, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 5, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 6, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 8, 'nnu' => (int) 16, 'oeu' => (int) 8, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 5, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 16, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421790' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000911', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27780' => 'bna', 'A03p35380' => 'bna', 'A04p21160' => 'bna', 'A05p40570' => 'bna', 'A06p26900' => 'bna', 'A08p33230' => 'bna', 'A09p65960' => 'bna', 'A10p18290' => 'bna', 'Aa31LG1G12990' => 'aar', 'Aa31LG1G2980' => 'aar', 'Aa31LG4G14320' => 'aar', 'Aa31LG7G11800' => 'aar', 'Aa31sc36G50' => 'aar', 'Aa31sc36G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3721' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5459' => 'aag', 'Actinidia03028' => 'ach', 'Actinidia03753' => 'ach', 'Actinidia04187' => 'ach', 'Actinidia05509' => 'ach', 'Actinidia24180' => 'ach', 'Actinidia26906' => 'ach', 'Actinidia37097' => 'ach', 'Actinidia38249' => 'ach', 'Ah.01g003470' => 'amhyb', 'Ah.01g004580' => 'amhyb', 'Ah.01g014850' => 'amhyb', 'Ah.01g016830' => 'amhyb', 'Ah.14g088000' => 'amhyb', 'AL1G22980' => 'aly', 'AL3G18990' => 'aly', 'AL4G22440' => 'aly', 'AL4G33180' => 'aly', 'AL5G22920' => 'aly', 'AL6G33660' => 'aly', 'AL8G20720' => 'aly', 'Aqoxy1G00935' => 'aox', 'Aqoxy1G02094' => 'aox', 'Aqoxy2G01239' => 'aox', 'Aqoxy4G01870' => 'aox', 'Aqoxy7G00450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.36ZVTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71EM27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5D6C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH3WRE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3NCM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RIM768' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YB5YRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z36GDV' => 'arhy', 'AT1G08250' => 'ath', 'AT1G11790' => 'ath', 'AT2G27820' => 'ath', 'AT3G07630' => 'ath', 'AT3G44720' => 'ath', 'AT5G22630' => 'ath', 'ATR0693G304' => 'atr', 'ATR0794G109' => 'atr', 'ATR0820G120' => 'atr', 'ATR1159G064' => 'atr', 'Atru.chr10.2239' => 'acertr', 'Atru.chr3.3371' => 'acertr', 'Atru.chr6.3202' => 'acertr', 'AUR62006499' => 'cqu', 'AUR62012718' => 'cqu', 'AUR62021938' => 'cqu', 'AUR62023932' => 'cqu', 'AUR62025034' => 'cqu', 'AUR62025035' => 'cqu', 'AUR62038307' => 'cqu', 'AUR62043466' => 'cqu', 'BcaB02g10748' => 'bca', 'BcaB03g13231' => 'bca', 'BcaB03g14689' => 'bca', 'BcaB05g22716' => 'bca', 'BcaB06g28172' => 'bca', 'BcaB08g36413' => 'bca', 'BcaC01g02186' => 'bca', 'BcaC01g04272' => 'bca', 'BcaC02g08080' => 'bca', 'BcaC02g08227' => 'bca', 'BcaC03g13901' => 'bca', 'BcaC04g19593' => 'bca', 'BcaC04g20874' => 'bca', 'BcaC05g29557' => 'bca', 'BcaC06g35505' => 'bca', 'BcaC07g41954' => 'bca', 'BcaC07g41955' => 'bca', 'BcaC07g41956' => 'bca', 'BcaC07g42519' => 'bca', 'BcaC07g42520' => 'bca', 'BcaC07g42523' => 'bca', 'BcaC07g42524' => 'bca', 'BcaC07g42525' => 'bca', 'BcaC08g47480' => 'bca', 'BcaC08g47481' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00530' => 'bna', 'BolC2t07178H' => 'bol', 'BolC3t16567H' => 'bol', 'BolC4t27234H' => 'bol', 'BolC5t29728H' => 'bol', 'BolC5t34622H' => 'bol', 'BolC6t40321H' => 'bol', 'BolC7t42028H' => 'bol', 'BolC8t49125H' => 'bol', 'BolC8t52538H' => 'bol', 'BolC8t52539H' => 'bol', 'BolC9t56681H' => 'bol', 'BolC9t58266H' => 'bol', 'BolSC21t60294H' => 'bol', 'BraA02t05670Z' => 'bra', 'BraA03t12716Z' => 'bra', 'BraA04t17685Z' => 'bra', 'BraA05t22788Z' => 'bra', 'BraA06t24032Z' => 'bra', 'BraA06t25625Z' => 'bra', 'BraA07t27930Z' => 'bra', 'BraA08t35242Z' => 'bra', 'BraA09t38609Z' => 'bra', 'BraA10t43905Z' => 'bra', 'C02p11060' => 'bna', 'C03p42990' => 'bna', 'C03p67310' => 'bna', 'C04p56990' => 'bna', 'C04p58660' => 'bna', 'C05p09890' => 'bna', 'C05p59680' => 'bna', 'C06p19830' => 'bna', 'C06p53040' => 'bna', 'C07p15230' => 'bna', 'C08p50070' => 'bna', 'C08p50090' => 'bna', 'C09p38330' => 'bna', 'C09p53940' => 'bna', 'CAN.G1014.1' => 'can', 'CAN.G644.30' => 'can', 'CAN.G84.47' => 'can', 'CAN.G919.8' => 'can', 'CANSAT54G0113' => 'cansat', 'CANSAT54G1286' => 'cansat', 'CANSAT64G1020' => 'cansat', 'CARHR008080' => 'chi', 'CARHR008090' => 'chi', 'CARHR012130' => 'chi', 'CARHR038390' => 'chi', 'CARHR082330' => 'chi', 'CARHR120520' => 'chi', 'CARHR151470' => 'chi', 'CARHR190950' => 'chi', 'Carub.0001s0760' => 'cru', 'Carub.0001s1146' => 'cru', 'Carub.0003s0721' => 'cru', 'Carub.0004s0858' => 'cru', 'Carub.0005s1040' => 'cru', 'Carub.0006s2035' => 'cru', 'Carub.0015s0005' => 'cru', 'Ca_01607_v3' => 'car', 'Ca_01677_v3' => 'car', 'Ca_06087_v3' => 'car', 'Ca_19238_v3' => 'car', 'Ca_19373_v3' => 'car', 'Ca_21079_v3' => 'car', 'CBR_g54016' => 'cbr', 'CBR_g54018' => 'cbr', 'CBR_g54020' => 'cbr', 'Cc01_g09780' => 'ccan', 'Cc01_g11680' => 'ccan', 'Cc02_g15610' => 'ccan', 'Cc05_g04350' => 'ccan', 'Cc09_g01580' => 'ccan', 'CDE01G0795' => 'cde', 'CDE02G2024' => 'cde', 'CDE02G2260' => 'cde', 'CDE02G4561' => 'cde', 'CDE05G2733' => 'cde', 'CDE05G3422' => 'cde', 'CDE06G2003' => 'cde', 'CDE08G0576' => 'cde', 'CDE09G0048' => 'cde', 'CDE11G0805' => 'cde', 'Cfa003644' => 'cfa', 'Cfa006290' => 'cfa', 'Cfa010080' => 'cfa', 'Cfa011376' => 'cfa', 'Cfa011576' => 'cfa', 'Cfa011577' => 'cfa', 'Cfa014389' => 'cfa', 'Ciclev10006044m.g' => 'ccl', 'Ciclev10006954m.g' => 'ccl', 'Ciclev10015131m.g' => 'ccl', 'Ciclev10015580m.g' => 'ccl', 'Ciclev10028359m.g' => 'ccl', 'Ciclev10028573m.g' => 'ccl', 'CiPaw.03G159300' => 'cil', 'CiPaw.04G115100' => 'cil', 'CiPaw.09G092800' => 'cil', 'CiPaw.10G071800' => 'cil', 'CiPaw.13G105800' => 'cil', 'CiPaw.13G141000' => 'cil', 'CiPaw.14G103400' => 'cil', 'ClCG01G012700' => 'cla', 'ClCG01G012720' => 'cla', 'ClCG01G021920' => 'cla', 'ClCG02G008870' => 'cla', 'ClCG02G020840' => 'cla', 'ClCG02G021930' => 'cla', 'COL.COLO4_19302' => 'col', 'COL.COLO4_25262' => 'col', 'COL.COLO4_31788' => 'col', 'Cpa.g.c34684' => 'cpa', 'Cpa.g.c36520.1' => 'cpa', 'Cpa.g.c45626' => 'cpa', 'Cpa.g.sc121.17' => 'cpa', 'Cpa.g.sc13.22' => 'cpa', 'Cpa.g.sc87.88' => 'cpa', 'Cre06.g261800' => 'cre', 'CsaV3_1G014500' => 'csa', 'CsaV3_1G014510' => 'csa', 'CsaV3_2G034880' => 'csa', 'CsaV3_6G014760' => 'csa', 'CsaV3_6G021500' => 'csa', 'CsaV3_6G048980' => 'csa', 'CSS0002511' => 'camsi', 'CSS0007556' => 'camsi', 'CSS0008532' => 'camsi', 'CSS0009709' => 'camsi', 'CSS0010486' => 'camsi', 'CSS0016768' => 'camsi', 'CSS0023512' => 'camsi', 'CSS0025341' => 'camsi', 'CSS0027999' => 'camsi', 'CSS0028944' => 'camsi', 'CSS0032292' => 'camsi', 'CSS0032464' => 'camsi', 'CSS0037153' => 'camsi', 'CSS0039256' => 'camsi', 'CSS0048392' => 'camsi', 'CSS0050458' => 'camsi', 'DCAR_004224' => 'dca', 'DCAR_006147' => 'dca', 'DCAR_006465' => 'dca', 'DCAR_008159' => 'dca', 'DCAR_012164' => 'dca', 'DCAR_019764' => 'dca', 'Dinv05418' => 'din', 'Dinv10839' => 'din', 'Dinv12521' => 'din', 'Dinv13900' => 'din', 'Dinv29426' => 'din', 'Duzib150G0263' => 'dzi', 'Duzib168G1178' => 'dzi', 'Duzib168G1924' => 'dzi', 'Duzib170G0299' => 'dzi', 'Duzib170G0813' => 'dzi', 'Duzib235G1128' => 'dzi', 'Duzib248G1060' => 'dzi', 'ECA232G1910' => 'eca', 'ECA233G4621' => 'eca', 'ECA238G1216' => 'eca', 'ECA238G1784' => 'eca', 'ECA248G1242' => 'eca', 'EL10Ac8g20071' => 'bvu', 'EL10Ac9g21086' => 'bvu', 'EL10Ac9g22407' => 'bvu', 'EL10Ac9g22412' => 'bvu', 'Eucgr.A01119' => 'egr', 'Eucgr.E04043' => 'egr', 'Eucgr.J00428' => 'egr', 'Eucgr.J00958' => 'egr', 'FAN11G3091' => 'fan', 'FAN11G3651' => 'fan', 'FAN16G2566' => 'fan', 'FAN21G3155' => 'fan', 'FAN21G3400' => 'fan', 'FAN21G3543' => 'fan', 'FAN25G0234' => 'fan', 'FAN25G1422' => 'fan', 'FAN25G3392' => 'fan', 'FvH4_3g01940' => 'fve', 'FvH4_3g29870' => 'fve', 'FvH4_3g33680' => 'fve', 'Glyma.09G004200' => 'gma', 'Glyma.11G151288' => 'gma', 'Glyma.11G189100' => 'gma', 'Glyma.12G072500' => 'gma', 'Glyma.12G085500' => 'gma', 'Glyma.12G181800' => 'gma', 'Glyma.12G193000' => 'gma', 'Glyma.13G309300' => 'gma', 'Glyma.13G319000' => 'gma', 'Glyma.17G012600' => 'gma', 'Gohir.A06G148600' => 'ghi', 'Gohir.A07G115800' => 'ghi', 'Gohir.A08G003600' => 'ghi', 'Gohir.A09G093300' => 'ghi', 'Gohir.A09G105400' => 'ghi', 'Gohir.A09G105500' => 'ghi', 'Gohir.D06G154600' => 'ghi', 'Gohir.D07G120200' => 'ghi', 'Gohir.D08G013900' => 'ghi', 'Gohir.D09G093100' => 'ghi', 'Gohir.D09G102200' => 'ghi', 'Gohir.D09G102300' => 'ghi', 'Gorai.001G129400' => 'gra', 'Gorai.004G008200' => 'gra', 'Gorai.006G109800' => 'gra', 'Gorai.006G119500' => 'gra', 'Gorai.006G121300' => 'gra', 'Gorai.010G180700' => 'gra', 'GSVIVG01012716001' => 'vvi', 'GSVIVG01025118001' => 'vvi', 'GSVIVG01030439001' => 'vvi', 'GSVIVG01031397001' => 'vvi', 'HanXRQChr01g0004201' => 'han', 'HanXRQChr02g0054941' => 'han', 'HanXRQChr05g0141811' => 'han', 'HanXRQChr07g0197751' => 'han', 'HanXRQChr11g0346691' => 'han', 'HanXRQChr13g0396971' => 'han', 'HanXRQChr14g0432951' => 'han', 'HanXRQChr14g0452001' => 'han', 'HanXRQChr15g0496681' => 'han', 'HanXRQChr17g0557491' => 'han', 'HanXRQChr17g0557501' => 'han', 'Haze_06809' => 'cav', 'Haze_12852' => 'cav', 'Haze_15850' => 'cav', 'Haze_23446' => 'cav', 'Haze_23942' => 'cav', 'Haze_23943' => 'cav', 'Hma1.2p1_0091F.1_g046450' => 'hma', 'Hma1.2p1_0128F.1_g059910' => 'hma', 'Hma1.2p1_0249F.1_g102260' => 'hma', 'Hma1.2p1_0453F.1_g156190' => 'hma', 'Hma1.2p1_0695F.1_g204380' => 'hma', 'Hma1.2p1_0749F.1_g212650' => 'hma', 'Hma1.2p1_2156F.1_g315420' => 'hma', 'Hma1.2p1_2686F.1_g326940' => 'hma', 'HPP92_006428' => 'vpl', 'HPP92_012069' => 'vpl', 'HPP92_014129' => 'vpl', 'HPP92_014133' => 'vpl', 'HPP92_017315' => 'vpl', 'HPP92_026445' => 'vpl', 'HPP92_026446' => 'vpl', 'Hund00774' => 'sun', 'Hund07682' => 'sun', 'Hund21413' => 'sun', 'Hund23462' => 'sun', 'Hund23463' => 'sun', 'Lalb_Chr03g0027911' => 'lal', 'Lalb_Chr13g0304271' => 'lal', 'Lalb_Chr19g0137471' => 'lal', 'Lalb_Chr22g0350651' => 'lal', 'Lalb_Chr24g0395151' => 'lal', 'Lj1A1231T40' => 'lonja', 'Lj1A221T48' => 'lonja', 'Lj1C924T12' => 'lonja', 'Lj2C993G6' => 'lonja', 'Lj3g0005790' => 'lja', 'Lj3g0015432' => 'lja', 'Lj3g0017722' => 'lja', 'Lj3g0018497' => 'lja', 'Lj4g0025071' => 'lja', 'Lsat_1_v5_gn_1_129680' => 'lsa', 'Lsat_1_v5_gn_2_25321' => 'lsa', 'Lsat_1_v5_gn_2_95461' => 'lsa', 'Lsat_1_v5_gn_4_159620' => 'lsa', 'Lsat_1_v5_gn_6_41301' => 'lsa', 'Lsat_1_v5_gn_6_74660' => 'lsa', 'Lsat_1_v5_gn_7_11520' => 'lsa', 'Lsat_1_v5_gn_9_67680' => 'lsa', 'Manes.04G008300' => 'mes', 'Manes.04G008400' => 'mes', 'Manes.04G026500' => 'mes', 'Manes.10G135300' => 'mes', 'Manes.11G157300' => 'mes', 'Manes.12G074000' => 'mes', 'Manes.16G006200' => 'mes', 'Manes.17G026400' => 'mes', 'Mapoly0024s0086' => 'mpo', 'Mapoly0024s0087' => 'mpo', 'Mapoly0071s0057' => 'mpo', 'Mapoly0204s0012' => 'mpo', 'MBI04_g37681_MAGBIO' => 'mbi', 'MBI05_g17779_MAGBIO' => 'mbi', 'MBI12_g31184_MAGBIO' => 'mbi', 'MBI17_g11083_MAGBIO' => 'mbi', 'MBI18_g03883_MAGBIO' => 'mbi', 'MBI18_g28940_MAGBIO' => 'mbi', 'MCO01G690' => 'mco', 'MD03G1109900' => 'mdo', 'MD03G1134800' => 'mdo', 'MD05G1348000' => 'mdo', 'MD10G1322400' => 'mdo', 'MD11G1123300' => 'mdo', 'MD11G1157600' => 'mdo', 'Medtr2g084875' => 'mtr', 'Medtr2g088130' => 'mtr', 'Medtr4g055310' => 'mtr', 'Medtr4g061070' => 'mtr', 'Medtr4g132250' => 'mtr', 'MELO3C004795.2' => 'cme', 'MELO3C004797.2' => 'cme', 'MELO3C007396.2' => 'cme', 'MELO3C019277.2' => 'cme', 'MELO3C021449.2' => 'cme', 'MELO3C025736.2' => 'cme', 'Migut.D02175' => 'egut', 'Migut.H01573' => 'egut', 'Migut.M01327' => 'egut', 'Migut.N02513' => 'egut', 'MSTRG.14638' => 'ama', 'MSTRG.18632' => 'ama', 'MSTRG.7203' => 'ama', 'Nitab4.5_0000533g0140' => 'nta', 'Nitab4.5_0000888g0150' => 'nta', 'Nitab4.5_0001453g0040' => 'nta', 'Nitab4.5_0002827g0090' => 'nta', 'Nitab4.5_0003082g0040' => 'nta', 'Nitab4.5_0007799g0040' => 'nta', 'Nitab4.5_0008983g0010' => 'nta', 'Nitab4.5_0009017g0020' => 'nta', 'Nn1g02132' => 'nnu', 'Nn1g03492' => 'nnu', 'Nn1g03493' => 'nnu', 'Nn1g03494' => 'nnu', 'Nn1g07164' => 'nnu', 'Nn1g07291' => 'nnu', 'Nn2g10655' => 'nnu', 'Nn2g11652' => 'nnu', 'Nn2g14008' => 'nnu', 'Nn3g17476' => 'nnu', 'Nn3g17477' => 'nnu', 'Nn4g22370' => 'nnu', 'Nn4g25255' => 'nnu', 'Nn5g27755' => 'nnu', 'Nn6g34260' => 'nnu', 'Nn6g35041' => 'nnu', 'Oeu005924.1' => 'oeu', 'Oeu008383.1' => 'oeu', 'Oeu014928.1' => 'oeu', 'Oeu019889.1' => 'oeu', 'Oeu022271.1' => 'oeu', 'Oeu025271.1' => 'oeu', 'Oeu036302.1' => 'oeu', 'Oeu044100.1' => 'oeu', 'Os01g0528300' => 'osa', 'Os03g0286200' => 'osa', 'Os04g0406600' => 'osa', 'Os07g0512000' => 'osa', 'Os07g0694600' => 'osa', 'Os08g0411000' => 'osa', 'Os09g0565700' => 'osa', 'Os09g0566050' => 'osa', 'Os10g0523700' => 'osa', 'Peaxi162Scf00002g00514' => 'pax', 'Peaxi162Scf00047g01817' => 'pax', 'Peaxi162Scf00114g00001' => 'pax', 'Peaxi162Scf00147g00613' => 'pax', 'Peaxi162Scf00389g00425' => 'pax', 'PGR042G1139' => 'pgr', 'PGR042G3273' => 'pgr', 'PGR102G2180' => 'pgr', 'PGR119G0234' => 'pgr', 'PGR119G0668' => 'pgr', 'PGSC0003DMG400007122' => 'stu', 'PGSC0003DMG400016478' => 'stu', 'PGSC0003DMG400025374' => 'stu', 'PGSC0003DMG400026536' => 'stu', 'Phvul.003G079600' => 'pvu', 'Phvul.005G115600' => 'pvu', 'Phvul.005G127100' => 'pvu', 'Phvul.006G149500' => 'pvu', 'Phvul.006G149600' => 'pvu', 'Phvul.011G071800' => 'pvu', 'Phvul.011G090400' => 'pvu', 'Potri.004G013400' => 'ptr', 'Potri.004G188100' => 'ptr', 'Potri.008G195500' => 'ptr', 'Potri.009G148800' => 'ptr', 'Potri.011G004700' => 'ptr', 'Pp3c17_22810' => 'ppa', 'Pp3c18_4480' => 'ppa', 'Pp3c19_13030' => 'ppa', 'Pp3c1_33620' => 'ppa', 'Pp3c2_9380' => 'ppa', 'PRCOL_00001023' => 'pco', 'Prupe.3G216300' => 'ppe', 'Prupe.4G019500' => 'ppe', 'Prupe.6G092500' => 'ppe', 'Prupe.6G119200' => 'ppe', 'Psat0s1945g0080' => 'psa', 'Psat0s4167g0040' => 'psa', 'Psat1g185800' => 'psa', 'Psat4g006440' => 'psa', 'Psat4g006480' => 'psa', 'Psat4g168120' => 'psa', 'Psat5g255680' => 'psa', 'Psat5g261760' => 'psa', 'Psat7g222120' => 'psa', 'PSO063G7252' => 'pso', 'PSO170G4778' => 'pso', 'PSO210G2249' => 'pso', 'PSO339G2411' => 'pso', 'PSO339G2457' => 'pso', 'PSO339G2854' => 'pso', 'PSO339G4288' => 'pso', 'PSO339G4615' => 'pso', 'PSO384G2796' => 'pso', 'PSO384G2940' => 'pso', 'PSO384G4227' => 'pso', 'PSO478G1425' => 'pso', 'PSO541G3863' => 'pso', 'PSO675G0507' => 'pso', 'PSO782G0338' => 'pso', 'PSO832G0644' => 'pso', 'QL01p013664' => 'qlo', 'QL01p036598' => 'qlo', 'QL05p072984' => 'qlo', 'QL08p005768' => 'qlo', 'QL08p032743' => 'qlo', 'QL93p0073_0439' => 'qlo', 'QL93p0073_0444' => 'qlo', 'RcHm_v2.0_Chr5g0002851' => 'rch', 'RcHm_v2.0_Chr5g0055201' => 'rch', 'RcHm_v2.0_Chr5g0061191' => 'rch', 'RcHm_v2.0_Chr7g0203231' => 'rch', 'Rhsim01G0208100' => 'rsi', 'Rhsim01G0208200' => 'rsi', 'Rhsim02G0106500' => 'rsi', 'Rhsim03G0107900' => 'rsi', 'Rhsim06G0163400' => 'rsi', 'Rhsim13G0105200' => 'rsi', 'Sabra04G0006300' => 'sbr', 'Sabra04G0127000' => 'sbr', 'Sabra08G0148700' => 'sbr', 'Sabra09G0117400' => 'sbr', 'SalBow1G3326' => 'sbo', 'SalBow3G3228' => 'sbo', 'SalBow6G1634' => 'sbo', 'SalBow6G3603' => 'sbo', 'SalBow6G5266' => 'sbo', 'SalBow7G2265' => 'sbo', 'SalBow8G0850' => 'sbo', 'SalBow8G2592' => 'sbo', 'Sc05g0009240' => 'sci', 'Sc12g0002300' => 'sci', 'Sc21g0000100' => 'sci', 'Sc21g0004720' => 'sci', 'Sed0002949' => 'sed', 'Sed0004114' => 'sed', 'Sed0004306' => 'sed', 'Sed0006172' => 'sed', 'Sed0008413' => 'sed', 'Sed0013809' => 'sed', 'Sed0019556' => 'sed', 'SEGI_03570' => 'sgi', 'SEGI_07859' => 'sgi', 'SEGI_15042' => 'sgi', 'SEGI_16263' => 'sgi', 'SEGI_16552' => 'sgi', 'SEGI_24331' => 'sgi', 'SEGI_27316' => 'sgi', 'SEGI_29521' => 'sgi', 'SEGI_41342' => 'sgi', 'SGA_v2.0_scaffold27G11617' => 'sas', 'SGA_v2.0_scaffold316G48428' => 'sas', 'SGA_v2.0_scaffold49G18261' => 'sas', 'SGA_v2.0_scaffold7G03831' => 'sas', 'SGA_v2.0_scaffold93G28359' => 'sas', 'SHI02210' => 'shi', 'SHI06028' => 'shi', 'SHI06321' => 'shi', 'SMO111G0012' => 'smo', 'SMO228G0080' => 'smo', 'SMO356G0756' => 'smo', 'Solyc02g080620.3' => 'sly', 'Solyc06g074530.1' => 'sly', 'Solyc11g066890.1' => 'sly', 'Solyc11g072520.3' => 'sly', 'Sopen02g025330' => 'spe', 'Sopen06g031000' => 'spe', 'Sopen09g008240' => 'spe', 'Sopen09g025210' => 'spe', 'Sopen11g026600' => 'spe', 'Sopen11g030170' => 'spe', 'Sp1g10420' => 'spa', 'Sp3g06570' => 'spa', 'Sp4g10660' => 'spa', 'Sp5g16460' => 'spa', 'Sp6g22710' => 'spa', 'TAR365G0112' => 'tar', 'TAR369G0717' => 'tar', 'TAR374G0976' => 'tar', 'TAR623G1128' => 'tar', 'TAR626G1937' => 'tar', 'TAR627G0123' => 'tar', 'TAR628G0305' => 'tar', 'TAR636G1176' => 'tar', 'TAR636G2442' => 'tar', 'THA.LOC104800556' => 'tha', 'THA.LOC104809501' => 'tha', 'THA.LOC104815126' => 'tha', 'THA.LOC104815732' => 'tha', 'THA.LOC104823528' => 'tha', 'Thecc.02G365600' => 'tca', 'Thecc.06G222300' => 'tca', 'Thecc.09G261800' => 'tca', 'Thecc.09G291400' => 'tca', 'Thhalv10003028m.g' => 'esa', 'Thhalv10007886m.g' => 'esa', 'Thhalv10016085m.g' => 'esa', 'Thhalv10016681m.g' => 'esa', 'Thhalv10020951m.g' => 'esa', 'TPR.G15598' => 'tpr', 'TPR.G29305' => 'tpr', 'TPR.G32395' => 'tpr', 'TPR.G36998' => 'tpr', 'TPR.G4227' => 'tpr', 'TWI18G1433' => 'twi', 'TWI31G0755' => 'twi', 'TWI38G0912' => 'twi', 'TWI75G1097' => 'twi', 'TWI75G1619' => 'twi', 'TWI79G1336' => 'twi', 'unitig_0.g943' => 'ugi', 'unitig_0.g944' => 'ugi', 'unitig_22.g6646' => 'ugi', 'unitig_37.g12681' => 'ugi', 'unitig_8.g3290' => 'ugi', 'vmacro03278' => 'vma', 'vmacro12197' => 'vma', 'vmacro14478' => 'vma', 'vmacro15787' => 'vma', 'vmacro15789' => 'vma', 'vmacro15790' => 'vma', 'vmacro15806' => 'vma', 'vmacro22907' => 'vma', 'vmacro22908' => 'vma', 'vmacro22909' => 'vma', 'vmacro23108' => 'vma', 'VMungo0540G0540' => 'vmu', 'VMungo0540G2468' => 'vmu', 'VMungo1080G0390' => 'vmu', 'VMungo1080G1165' => 'vmu', 'VMungo1127G0170' => 'vmu', 'VMungo1127G2099' => 'vmu', 'VMungo1215G3013' => 'vmu', 'Zm00001eb013110' => 'zma', 'Zm00001eb084260' => 'zma', 'Zm00001eb096110' => 'zma', 'Zm00001eb217510' => 'zma', 'Zm00001eb322550' => 'zma', 'Zm00001eb390770' => 'zma', 'Zm00001eb397170' => 'zma', 'Zm00001eb404610' => 'zma', 'Zm00001eb421790' => 'zma' ), 'gf_id' => 'HOM05D000911', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000911' ), 'data_identifier' => 'HOM05D000911', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000911', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27780' => 'bna', 'A03p35380' => 'bna', 'A04p21160' => 'bna', 'A05p40570' => 'bna', 'A06p26900' => 'bna', 'A08p33230' => 'bna', 'A09p65960' => 'bna', 'A10p18290' => 'bna', 'Aa31LG1G12990' => 'aar', 'Aa31LG1G2980' => 'aar', 'Aa31LG4G14320' => 'aar', 'Aa31LG7G11800' => 'aar', 'Aa31sc36G50' => 'aar', 'Aa31sc36G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3721' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5459' => 'aag', 'Actinidia03028' => 'ach', 'Actinidia03753' => 'ach', 'Actinidia04187' => 'ach', 'Actinidia05509' => 'ach', 'Actinidia24180' => 'ach', 'Actinidia26906' => 'ach', 'Actinidia37097' => 'ach', 'Actinidia38249' => 'ach', 'Ah.01g003470' => 'amhyb', 'Ah.01g004580' => 'amhyb', 'Ah.01g014850' => 'amhyb', 'Ah.01g016830' => 'amhyb', 'Ah.14g088000' => 'amhyb', 'AL1G22980' => 'aly', 'AL3G18990' => 'aly', 'AL4G22440' => 'aly', 'AL4G33180' => 'aly', 'AL5G22920' => 'aly', 'AL6G33660' => 'aly', 'AL8G20720' => 'aly', 'Aqoxy1G00935' => 'aox', 'Aqoxy1G02094' => 'aox', 'Aqoxy2G01239' => 'aox', 'Aqoxy4G01870' => 'aox', 'Aqoxy7G00450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.36ZVTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71EM27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5D6C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH3WRE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3NCM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RIM768' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YB5YRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z36GDV' => 'arhy', 'AT1G08250' => 'ath', 'AT1G11790' => 'ath', 'AT2G27820' => 'ath', 'AT3G07630' => 'ath', 'AT3G44720' => 'ath', 'AT5G22630' => 'ath', 'ATR0693G304' => 'atr', 'ATR0794G109' => 'atr', 'ATR0820G120' => 'atr', 'ATR1159G064' => 'atr', 'Atru.chr10.2239' => 'acertr', 'Atru.chr3.3371' => 'acertr', 'Atru.chr6.3202' => 'acertr', 'AUR62006499' => 'cqu', 'AUR62012718' => 'cqu', 'AUR62021938' => 'cqu', 'AUR62023932' => 'cqu', 'AUR62025034' => 'cqu', 'AUR62025035' => 'cqu', 'AUR62038307' => 'cqu', 'AUR62043466' => 'cqu', 'BcaB02g10748' => 'bca', 'BcaB03g13231' => 'bca', 'BcaB03g14689' => 'bca', 'BcaB05g22716' => 'bca', 'BcaB06g28172' => 'bca', 'BcaB08g36413' => 'bca', 'BcaC01g02186' => 'bca', 'BcaC01g04272' => 'bca', 'BcaC02g08080' => 'bca', 'BcaC02g08227' => 'bca', 'BcaC03g13901' => 'bca', 'BcaC04g19593' => 'bca', 'BcaC04g20874' => 'bca', 'BcaC05g29557' => 'bca', 'BcaC06g35505' => 'bca', 'BcaC07g41954' => 'bca', 'BcaC07g41955' => 'bca', 'BcaC07g41956' => 'bca', 'BcaC07g42519' => 'bca', 'BcaC07g42520' => 'bca', 'BcaC07g42523' => 'bca', 'BcaC07g42524' => 'bca', 'BcaC07g42525' => 'bca', 'BcaC08g47480' => 'bca', 'BcaC08g47481' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00530' => 'bna', 'BolC2t07178H' => 'bol', 'BolC3t16567H' => 'bol', 'BolC4t27234H' => 'bol', 'BolC5t29728H' => 'bol', 'BolC5t34622H' => 'bol', 'BolC6t40321H' => 'bol', 'BolC7t42028H' => 'bol', 'BolC8t49125H' => 'bol', 'BolC8t52538H' => 'bol', 'BolC8t52539H' => 'bol', 'BolC9t56681H' => 'bol', 'BolC9t58266H' => 'bol', 'BolSC21t60294H' => 'bol', 'BraA02t05670Z' => 'bra', 'BraA03t12716Z' => 'bra', 'BraA04t17685Z' => 'bra', 'BraA05t22788Z' => 'bra', 'BraA06t24032Z' => 'bra', 'BraA06t25625Z' => 'bra', 'BraA07t27930Z' => 'bra', 'BraA08t35242Z' => 'bra', 'BraA09t38609Z' => 'bra', 'BraA10t43905Z' => 'bra', 'C02p11060' => 'bna', 'C03p42990' => 'bna', 'C03p67310' => 'bna', 'C04p56990' => 'bna', 'C04p58660' => 'bna', 'C05p09890' => 'bna', 'C05p59680' => 'bna', 'C06p19830' => 'bna', 'C06p53040' => 'bna', 'C07p15230' => 'bna', 'C08p50070' => 'bna', 'C08p50090' => 'bna', 'C09p38330' => 'bna', 'C09p53940' => 'bna', 'CAN.G1014.1' => 'can', 'CAN.G644.30' => 'can', 'CAN.G84.47' => 'can', 'CAN.G919.8' => 'can', 'CANSAT54G0113' => 'cansat', 'CANSAT54G1286' => 'cansat', 'CANSAT64G1020' => 'cansat', 'CARHR008080' => 'chi', 'CARHR008090' => 'chi', 'CARHR012130' => 'chi', 'CARHR038390' => 'chi', 'CARHR082330' => 'chi', 'CARHR120520' => 'chi', 'CARHR151470' => 'chi', 'CARHR190950' => 'chi', 'Carub.0001s0760' => 'cru', 'Carub.0001s1146' => 'cru', 'Carub.0003s0721' => 'cru', 'Carub.0004s0858' => 'cru', 'Carub.0005s1040' => 'cru', 'Carub.0006s2035' => 'cru', 'Carub.0015s0005' => 'cru', 'Ca_01607_v3' => 'car', 'Ca_01677_v3' => 'car', 'Ca_06087_v3' => 'car', 'Ca_19238_v3' => 'car', 'Ca_19373_v3' => 'car', 'Ca_21079_v3' => 'car', 'CBR_g54016' => 'cbr', 'CBR_g54018' => 'cbr', 'CBR_g54020' => 'cbr', 'Cc01_g09780' => 'ccan', 'Cc01_g11680' => 'ccan', 'Cc02_g15610' => 'ccan', 'Cc05_g04350' => 'ccan', 'Cc09_g01580' => 'ccan', 'CDE01G0795' => 'cde', 'CDE02G2024' => 'cde', 'CDE02G2260' => 'cde', 'CDE02G4561' => 'cde', 'CDE05G2733' => 'cde', 'CDE05G3422' => 'cde', 'CDE06G2003' => 'cde', 'CDE08G0576' => 'cde', 'CDE09G0048' => 'cde', 'CDE11G0805' => 'cde', 'Cfa003644' => 'cfa', 'Cfa006290' => 'cfa', 'Cfa010080' => 'cfa', 'Cfa011376' => 'cfa', 'Cfa011576' => 'cfa', 'Cfa011577' => 'cfa', 'Cfa014389' => 'cfa', 'Ciclev10006044m.g' => 'ccl', 'Ciclev10006954m.g' => 'ccl', 'Ciclev10015131m.g' => 'ccl', 'Ciclev10015580m.g' => 'ccl', 'Ciclev10028359m.g' => 'ccl', 'Ciclev10028573m.g' => 'ccl', 'CiPaw.03G159300' => 'cil', 'CiPaw.04G115100' => 'cil', 'CiPaw.09G092800' => 'cil', 'CiPaw.10G071800' => 'cil', 'CiPaw.13G105800' => 'cil', 'CiPaw.13G141000' => 'cil', 'CiPaw.14G103400' => 'cil', 'ClCG01G012700' => 'cla', 'ClCG01G012720' => 'cla', 'ClCG01G021920' => 'cla', 'ClCG02G008870' => 'cla', 'ClCG02G020840' => 'cla', 'ClCG02G021930' => 'cla', 'COL.COLO4_19302' => 'col', 'COL.COLO4_25262' => 'col', 'COL.COLO4_31788' => 'col', 'Cpa.g.c34684' => 'cpa', 'Cpa.g.c36520.1' => 'cpa', 'Cpa.g.c45626' => 'cpa', 'Cpa.g.sc121.17' => 'cpa', 'Cpa.g.sc13.22' => 'cpa', 'Cpa.g.sc87.88' => 'cpa', 'Cre06.g261800' => 'cre', 'CsaV3_1G014500' => 'csa', 'CsaV3_1G014510' => 'csa', 'CsaV3_2G034880' => 'csa', 'CsaV3_6G014760' => 'csa', 'CsaV3_6G021500' => 'csa', 'CsaV3_6G048980' => 'csa', 'CSS0002511' => 'camsi', 'CSS0007556' => 'camsi', 'CSS0008532' => 'camsi', 'CSS0009709' => 'camsi', 'CSS0010486' => 'camsi', 'CSS0016768' => 'camsi', 'CSS0023512' => 'camsi', 'CSS0025341' => 'camsi', 'CSS0027999' => 'camsi', 'CSS0028944' => 'camsi', 'CSS0032292' => 'camsi', 'CSS0032464' => 'camsi', 'CSS0037153' => 'camsi', 'CSS0039256' => 'camsi', 'CSS0048392' => 'camsi', 'CSS0050458' => 'camsi', 'DCAR_004224' => 'dca', 'DCAR_006147' => 'dca', 'DCAR_006465' => 'dca', 'DCAR_008159' => 'dca', 'DCAR_012164' => 'dca', 'DCAR_019764' => 'dca', 'Dinv05418' => 'din', 'Dinv10839' => 'din', 'Dinv12521' => 'din', 'Dinv13900' => 'din', 'Dinv29426' => 'din', 'Duzib150G0263' => 'dzi', 'Duzib168G1178' => 'dzi', 'Duzib168G1924' => 'dzi', 'Duzib170G0299' => 'dzi', 'Duzib170G0813' => 'dzi', 'Duzib235G1128' => 'dzi', 'Duzib248G1060' => 'dzi', 'ECA232G1910' => 'eca', 'ECA233G4621' => 'eca', 'ECA238G1216' => 'eca', 'ECA238G1784' => 'eca', 'ECA248G1242' => 'eca', 'EL10Ac8g20071' => 'bvu', 'EL10Ac9g21086' => 'bvu', 'EL10Ac9g22407' => 'bvu', 'EL10Ac9g22412' => 'bvu', 'Eucgr.A01119' => 'egr', 'Eucgr.E04043' => 'egr', 'Eucgr.J00428' => 'egr', 'Eucgr.J00958' => 'egr', 'FAN11G3091' => 'fan', 'FAN11G3651' => 'fan', 'FAN16G2566' => 'fan', 'FAN21G3155' => 'fan', 'FAN21G3400' => 'fan', 'FAN21G3543' => 'fan', 'FAN25G0234' => 'fan', 'FAN25G1422' => 'fan', 'FAN25G3392' => 'fan', 'FvH4_3g01940' => 'fve', 'FvH4_3g29870' => 'fve', 'FvH4_3g33680' => 'fve', 'Glyma.09G004200' => 'gma', 'Glyma.11G151288' => 'gma', 'Glyma.11G189100' => 'gma', 'Glyma.12G072500' => 'gma', 'Glyma.12G085500' => 'gma', 'Glyma.12G181800' => 'gma', 'Glyma.12G193000' => 'gma', 'Glyma.13G309300' => 'gma', 'Glyma.13G319000' => 'gma', 'Glyma.17G012600' => 'gma', 'Gohir.A06G148600' => 'ghi', 'Gohir.A07G115800' => 'ghi', 'Gohir.A08G003600' => 'ghi', 'Gohir.A09G093300' => 'ghi', 'Gohir.A09G105400' => 'ghi', 'Gohir.A09G105500' => 'ghi', 'Gohir.D06G154600' => 'ghi', 'Gohir.D07G120200' => 'ghi', 'Gohir.D08G013900' => 'ghi', 'Gohir.D09G093100' => 'ghi', 'Gohir.D09G102200' => 'ghi', 'Gohir.D09G102300' => 'ghi', 'Gorai.001G129400' => 'gra', 'Gorai.004G008200' => 'gra', 'Gorai.006G109800' => 'gra', 'Gorai.006G119500' => 'gra', 'Gorai.006G121300' => 'gra', 'Gorai.010G180700' => 'gra', 'GSVIVG01012716001' => 'vvi', 'GSVIVG01025118001' => 'vvi', 'GSVIVG01030439001' => 'vvi', 'GSVIVG01031397001' => 'vvi', 'HanXRQChr01g0004201' => 'han', 'HanXRQChr02g0054941' => 'han', 'HanXRQChr05g0141811' => 'han', 'HanXRQChr07g0197751' => 'han', 'HanXRQChr11g0346691' => 'han', 'HanXRQChr13g0396971' => 'han', 'HanXRQChr14g0432951' => 'han', 'HanXRQChr14g0452001' => 'han', 'HanXRQChr15g0496681' => 'han', 'HanXRQChr17g0557491' => 'han', 'HanXRQChr17g0557501' => 'han', 'Haze_06809' => 'cav', 'Haze_12852' => 'cav', 'Haze_15850' => 'cav', 'Haze_23446' => 'cav', 'Haze_23942' => 'cav', 'Haze_23943' => 'cav', 'Hma1.2p1_0091F.1_g046450' => 'hma', 'Hma1.2p1_0128F.1_g059910' => 'hma', 'Hma1.2p1_0249F.1_g102260' => 'hma', 'Hma1.2p1_0453F.1_g156190' => 'hma', 'Hma1.2p1_0695F.1_g204380' => 'hma', 'Hma1.2p1_0749F.1_g212650' => 'hma', 'Hma1.2p1_2156F.1_g315420' => 'hma', 'Hma1.2p1_2686F.1_g326940' => 'hma', 'HPP92_006428' => 'vpl', 'HPP92_012069' => 'vpl', 'HPP92_014129' => 'vpl', 'HPP92_014133' => 'vpl', 'HPP92_017315' => 'vpl', 'HPP92_026445' => 'vpl', 'HPP92_026446' => 'vpl', 'Hund00774' => 'sun', 'Hund07682' => 'sun', 'Hund21413' => 'sun', 'Hund23462' => 'sun', 'Hund23463' => 'sun', 'Lalb_Chr03g0027911' => 'lal', 'Lalb_Chr13g0304271' => 'lal', 'Lalb_Chr19g0137471' => 'lal', 'Lalb_Chr22g0350651' => 'lal', 'Lalb_Chr24g0395151' => 'lal', 'Lj1A1231T40' => 'lonja', 'Lj1A221T48' => 'lonja', 'Lj1C924T12' => 'lonja', 'Lj2C993G6' => 'lonja', 'Lj3g0005790' => 'lja', 'Lj3g0015432' => 'lja', 'Lj3g0017722' => 'lja', 'Lj3g0018497' => 'lja', 'Lj4g0025071' => 'lja', 'Lsat_1_v5_gn_1_129680' => 'lsa', 'Lsat_1_v5_gn_2_25321' => 'lsa', 'Lsat_1_v5_gn_2_95461' => 'lsa', 'Lsat_1_v5_gn_4_159620' => 'lsa', 'Lsat_1_v5_gn_6_41301' => 'lsa', 'Lsat_1_v5_gn_6_74660' => 'lsa', 'Lsat_1_v5_gn_7_11520' => 'lsa', 'Lsat_1_v5_gn_9_67680' => 'lsa', 'Manes.04G008300' => 'mes', 'Manes.04G008400' => 'mes', 'Manes.04G026500' => 'mes', 'Manes.10G135300' => 'mes', 'Manes.11G157300' => 'mes', 'Manes.12G074000' => 'mes', 'Manes.16G006200' => 'mes', 'Manes.17G026400' => 'mes', 'Mapoly0024s0086' => 'mpo', 'Mapoly0024s0087' => 'mpo', 'Mapoly0071s0057' => 'mpo', 'Mapoly0204s0012' => 'mpo', 'MBI04_g37681_MAGBIO' => 'mbi', 'MBI05_g17779_MAGBIO' => 'mbi', 'MBI12_g31184_MAGBIO' => 'mbi', 'MBI17_g11083_MAGBIO' => 'mbi', 'MBI18_g03883_MAGBIO' => 'mbi', 'MBI18_g28940_MAGBIO' => 'mbi', 'MCO01G690' => 'mco', 'MD03G1109900' => 'mdo', 'MD03G1134800' => 'mdo', 'MD05G1348000' => 'mdo', 'MD10G1322400' => 'mdo', 'MD11G1123300' => 'mdo', 'MD11G1157600' => 'mdo', 'Medtr2g084875' => 'mtr', 'Medtr2g088130' => 'mtr', 'Medtr4g055310' => 'mtr', 'Medtr4g061070' => 'mtr', 'Medtr4g132250' => 'mtr', 'MELO3C004795.2' => 'cme', 'MELO3C004797.2' => 'cme', 'MELO3C007396.2' => 'cme', 'MELO3C019277.2' => 'cme', 'MELO3C021449.2' => 'cme', 'MELO3C025736.2' => 'cme', 'Migut.D02175' => 'egut', 'Migut.H01573' => 'egut', 'Migut.M01327' => 'egut', 'Migut.N02513' => 'egut', 'MSTRG.14638' => 'ama', 'MSTRG.18632' => 'ama', 'MSTRG.7203' => 'ama', 'Nitab4.5_0000533g0140' => 'nta', 'Nitab4.5_0000888g0150' => 'nta', 'Nitab4.5_0001453g0040' => 'nta', 'Nitab4.5_0002827g0090' => 'nta', 'Nitab4.5_0003082g0040' => 'nta', 'Nitab4.5_0007799g0040' => 'nta', 'Nitab4.5_0008983g0010' => 'nta', 'Nitab4.5_0009017g0020' => 'nta', 'Nn1g02132' => 'nnu', 'Nn1g03492' => 'nnu', 'Nn1g03493' => 'nnu', 'Nn1g03494' => 'nnu', 'Nn1g07164' => 'nnu', 'Nn1g07291' => 'nnu', 'Nn2g10655' => 'nnu', 'Nn2g11652' => 'nnu', 'Nn2g14008' => 'nnu', 'Nn3g17476' => 'nnu', 'Nn3g17477' => 'nnu', 'Nn4g22370' => 'nnu', 'Nn4g25255' => 'nnu', 'Nn5g27755' => 'nnu', 'Nn6g34260' => 'nnu', 'Nn6g35041' => 'nnu', 'Oeu005924.1' => 'oeu', 'Oeu008383.1' => 'oeu', 'Oeu014928.1' => 'oeu', 'Oeu019889.1' => 'oeu', 'Oeu022271.1' => 'oeu', 'Oeu025271.1' => 'oeu', 'Oeu036302.1' => 'oeu', 'Oeu044100.1' => 'oeu', 'Os01g0528300' => 'osa', 'Os03g0286200' => 'osa', 'Os04g0406600' => 'osa', 'Os07g0512000' => 'osa', 'Os07g0694600' => 'osa', 'Os08g0411000' => 'osa', 'Os09g0565700' => 'osa', 'Os09g0566050' => 'osa', 'Os10g0523700' => 'osa', 'Peaxi162Scf00002g00514' => 'pax', 'Peaxi162Scf00047g01817' => 'pax', 'Peaxi162Scf00114g00001' => 'pax', 'Peaxi162Scf00147g00613' => 'pax', 'Peaxi162Scf00389g00425' => 'pax', 'PGR042G1139' => 'pgr', 'PGR042G3273' => 'pgr', 'PGR102G2180' => 'pgr', 'PGR119G0234' => 'pgr', 'PGR119G0668' => 'pgr', 'PGSC0003DMG400007122' => 'stu', 'PGSC0003DMG400016478' => 'stu', 'PGSC0003DMG400025374' => 'stu', 'PGSC0003DMG400026536' => 'stu', 'Phvul.003G079600' => 'pvu', 'Phvul.005G115600' => 'pvu', 'Phvul.005G127100' => 'pvu', 'Phvul.006G149500' => 'pvu', 'Phvul.006G149600' => 'pvu', 'Phvul.011G071800' => 'pvu', 'Phvul.011G090400' => 'pvu', 'Potri.004G013400' => 'ptr', 'Potri.004G188100' => 'ptr', 'Potri.008G195500' => 'ptr', 'Potri.009G148800' => 'ptr', 'Potri.011G004700' => 'ptr', 'Pp3c17_22810' => 'ppa', 'Pp3c18_4480' => 'ppa', 'Pp3c19_13030' => 'ppa', 'Pp3c1_33620' => 'ppa', 'Pp3c2_9380' => 'ppa', 'PRCOL_00001023' => 'pco', 'Prupe.3G216300' => 'ppe', 'Prupe.4G019500' => 'ppe', 'Prupe.6G092500' => 'ppe', 'Prupe.6G119200' => 'ppe', 'Psat0s1945g0080' => 'psa', 'Psat0s4167g0040' => 'psa', 'Psat1g185800' => 'psa', 'Psat4g006440' => 'psa', 'Psat4g006480' => 'psa', 'Psat4g168120' => 'psa', 'Psat5g255680' => 'psa', 'Psat5g261760' => 'psa', 'Psat7g222120' => 'psa', 'PSO063G7252' => 'pso', 'PSO170G4778' => 'pso', 'PSO210G2249' => 'pso', 'PSO339G2411' => 'pso', 'PSO339G2457' => 'pso', 'PSO339G2854' => 'pso', 'PSO339G4288' => 'pso', 'PSO339G4615' => 'pso', 'PSO384G2796' => 'pso', 'PSO384G2940' => 'pso', 'PSO384G4227' => 'pso', 'PSO478G1425' => 'pso', 'PSO541G3863' => 'pso', 'PSO675G0507' => 'pso', 'PSO782G0338' => 'pso', 'PSO832G0644' => 'pso', 'QL01p013664' => 'qlo', 'QL01p036598' => 'qlo', 'QL05p072984' => 'qlo', 'QL08p005768' => 'qlo', 'QL08p032743' => 'qlo', 'QL93p0073_0439' => 'qlo', 'QL93p0073_0444' => 'qlo', 'RcHm_v2.0_Chr5g0002851' => 'rch', 'RcHm_v2.0_Chr5g0055201' => 'rch', 'RcHm_v2.0_Chr5g0061191' => 'rch', 'RcHm_v2.0_Chr7g0203231' => 'rch', 'Rhsim01G0208100' => 'rsi', 'Rhsim01G0208200' => 'rsi', 'Rhsim02G0106500' => 'rsi', 'Rhsim03G0107900' => 'rsi', 'Rhsim06G0163400' => 'rsi', 'Rhsim13G0105200' => 'rsi', 'Sabra04G0006300' => 'sbr', 'Sabra04G0127000' => 'sbr', 'Sabra08G0148700' => 'sbr', 'Sabra09G0117400' => 'sbr', 'SalBow1G3326' => 'sbo', 'SalBow3G3228' => 'sbo', 'SalBow6G1634' => 'sbo', 'SalBow6G3603' => 'sbo', 'SalBow6G5266' => 'sbo', 'SalBow7G2265' => 'sbo', 'SalBow8G0850' => 'sbo', 'SalBow8G2592' => 'sbo', 'Sc05g0009240' => 'sci', 'Sc12g0002300' => 'sci', 'Sc21g0000100' => 'sci', 'Sc21g0004720' => 'sci', 'Sed0002949' => 'sed', 'Sed0004114' => 'sed', 'Sed0004306' => 'sed', 'Sed0006172' => 'sed', 'Sed0008413' => 'sed', 'Sed0013809' => 'sed', 'Sed0019556' => 'sed', 'SEGI_03570' => 'sgi', 'SEGI_07859' => 'sgi', 'SEGI_15042' => 'sgi', 'SEGI_16263' => 'sgi', 'SEGI_16552' => 'sgi', 'SEGI_24331' => 'sgi', 'SEGI_27316' => 'sgi', 'SEGI_29521' => 'sgi', 'SEGI_41342' => 'sgi', 'SGA_v2.0_scaffold27G11617' => 'sas', 'SGA_v2.0_scaffold316G48428' => 'sas', 'SGA_v2.0_scaffold49G18261' => 'sas', 'SGA_v2.0_scaffold7G03831' => 'sas', 'SGA_v2.0_scaffold93G28359' => 'sas', 'SHI02210' => 'shi', 'SHI06028' => 'shi', 'SHI06321' => 'shi', 'SMO111G0012' => 'smo', 'SMO228G0080' => 'smo', 'SMO356G0756' => 'smo', 'Solyc02g080620.3' => 'sly', 'Solyc06g074530.1' => 'sly', 'Solyc11g066890.1' => 'sly', 'Solyc11g072520.3' => 'sly', 'Sopen02g025330' => 'spe', 'Sopen06g031000' => 'spe', 'Sopen09g008240' => 'spe', 'Sopen09g025210' => 'spe', 'Sopen11g026600' => 'spe', 'Sopen11g030170' => 'spe', 'Sp1g10420' => 'spa', 'Sp3g06570' => 'spa', 'Sp4g10660' => 'spa', 'Sp5g16460' => 'spa', 'Sp6g22710' => 'spa', 'TAR365G0112' => 'tar', 'TAR369G0717' => 'tar', 'TAR374G0976' => 'tar', 'TAR623G1128' => 'tar', 'TAR626G1937' => 'tar', 'TAR627G0123' => 'tar', 'TAR628G0305' => 'tar', 'TAR636G1176' => 'tar', 'TAR636G2442' => 'tar', 'THA.LOC104800556' => 'tha', 'THA.LOC104809501' => 'tha', 'THA.LOC104815126' => 'tha', 'THA.LOC104815732' => 'tha', 'THA.LOC104823528' => 'tha', 'Thecc.02G365600' => 'tca', 'Thecc.06G222300' => 'tca', 'Thecc.09G261800' => 'tca', 'Thecc.09G291400' => 'tca', 'Thhalv10003028m.g' => 'esa', 'Thhalv10007886m.g' => 'esa', 'Thhalv10016085m.g' => 'esa', 'Thhalv10016681m.g' => 'esa', 'Thhalv10020951m.g' => 'esa', 'TPR.G15598' => 'tpr', 'TPR.G29305' => 'tpr', 'TPR.G32395' => 'tpr', 'TPR.G36998' => 'tpr', 'TPR.G4227' => 'tpr', 'TWI18G1433' => 'twi', 'TWI31G0755' => 'twi', 'TWI38G0912' => 'twi', 'TWI75G1097' => 'twi', 'TWI75G1619' => 'twi', 'TWI79G1336' => 'twi', 'unitig_0.g943' => 'ugi', 'unitig_0.g944' => 'ugi', 'unitig_22.g6646' => 'ugi', 'unitig_37.g12681' => 'ugi', 'unitig_8.g3290' => 'ugi', 'vmacro03278' => 'vma', 'vmacro12197' => 'vma', 'vmacro14478' => 'vma', 'vmacro15787' => 'vma', 'vmacro15789' => 'vma', 'vmacro15790' => 'vma', 'vmacro15806' => 'vma', 'vmacro22907' => 'vma', 'vmacro22908' => 'vma', 'vmacro22909' => 'vma', 'vmacro23108' => 'vma', 'VMungo0540G0540' => 'vmu', 'VMungo0540G2468' => 'vmu', 'VMungo1080G0390' => 'vmu', 'VMungo1080G1165' => 'vmu', 'VMungo1127G0170' => 'vmu', 'VMungo1127G2099' => 'vmu', 'VMungo1215G3013' => 'vmu', 'Zm00001eb013110' => 'zma', 'Zm00001eb084260' => 'zma', 'Zm00001eb096110' => 'zma', 'Zm00001eb217510' => 'zma', 'Zm00001eb322550' => 'zma', 'Zm00001eb390770' => 'zma', 'Zm00001eb397170' => 'zma', 'Zm00001eb404610' => 'zma', 'Zm00001eb421790' => 'zma' ) $gf_id = 'HOM05D000911' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000911' ) $data_identifier = 'HOM05D000911' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 16, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 5, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 6, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 8, 'nnu' => (int) 16, 'oeu' => (int) 8, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 5, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 16, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421790' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000911', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27780' => 'bna', 'A03p35380' => 'bna', 'A04p21160' => 'bna', 'A05p40570' => 'bna', 'A06p26900' => 'bna', 'A08p33230' => 'bna', 'A09p65960' => 'bna', 'A10p18290' => 'bna', 'Aa31LG1G12990' => 'aar', 'Aa31LG1G2980' => 'aar', 'Aa31LG4G14320' => 'aar', 'Aa31LG7G11800' => 'aar', 'Aa31sc36G50' => 'aar', 'Aa31sc36G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3721' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5459' => 'aag', 'Actinidia03028' => 'ach', 'Actinidia03753' => 'ach', 'Actinidia04187' => 'ach', 'Actinidia05509' => 'ach', 'Actinidia24180' => 'ach', 'Actinidia26906' => 'ach', 'Actinidia37097' => 'ach', 'Actinidia38249' => 'ach', 'Ah.01g003470' => 'amhyb', 'Ah.01g004580' => 'amhyb', 'Ah.01g014850' => 'amhyb', 'Ah.01g016830' => 'amhyb', 'Ah.14g088000' => 'amhyb', 'AL1G22980' => 'aly', 'AL3G18990' => 'aly', 'AL4G22440' => 'aly', 'AL4G33180' => 'aly', 'AL5G22920' => 'aly', 'AL6G33660' => 'aly', 'AL8G20720' => 'aly', 'Aqoxy1G00935' => 'aox', 'Aqoxy1G02094' => 'aox', 'Aqoxy2G01239' => 'aox', 'Aqoxy4G01870' => 'aox', 'Aqoxy7G00450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.36ZVTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71EM27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5D6C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH3WRE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3NCM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RIM768' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YB5YRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z36GDV' => 'arhy', 'AT1G08250' => 'ath', 'AT1G11790' => 'ath', 'AT2G27820' => 'ath', 'AT3G07630' => 'ath', 'AT3G44720' => 'ath', 'AT5G22630' => 'ath', 'ATR0693G304' => 'atr', 'ATR0794G109' => 'atr', 'ATR0820G120' => 'atr', 'ATR1159G064' => 'atr', 'Atru.chr10.2239' => 'acertr', 'Atru.chr3.3371' => 'acertr', 'Atru.chr6.3202' => 'acertr', 'AUR62006499' => 'cqu', 'AUR62012718' => 'cqu', 'AUR62021938' => 'cqu', 'AUR62023932' => 'cqu', 'AUR62025034' => 'cqu', 'AUR62025035' => 'cqu', 'AUR62038307' => 'cqu', 'AUR62043466' => 'cqu', 'BcaB02g10748' => 'bca', 'BcaB03g13231' => 'bca', 'BcaB03g14689' => 'bca', 'BcaB05g22716' => 'bca', 'BcaB06g28172' => 'bca', 'BcaB08g36413' => 'bca', 'BcaC01g02186' => 'bca', 'BcaC01g04272' => 'bca', 'BcaC02g08080' => 'bca', 'BcaC02g08227' => 'bca', 'BcaC03g13901' => 'bca', 'BcaC04g19593' => 'bca', 'BcaC04g20874' => 'bca', 'BcaC05g29557' => 'bca', 'BcaC06g35505' => 'bca', 'BcaC07g41954' => 'bca', 'BcaC07g41955' => 'bca', 'BcaC07g41956' => 'bca', 'BcaC07g42519' => 'bca', 'BcaC07g42520' => 'bca', 'BcaC07g42523' => 'bca', 'BcaC07g42524' => 'bca', 'BcaC07g42525' => 'bca', 'BcaC08g47480' => 'bca', 'BcaC08g47481' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00530' => 'bna', 'BolC2t07178H' => 'bol', 'BolC3t16567H' => 'bol', 'BolC4t27234H' => 'bol', 'BolC5t29728H' => 'bol', 'BolC5t34622H' => 'bol', 'BolC6t40321H' => 'bol', 'BolC7t42028H' => 'bol', 'BolC8t49125H' => 'bol', 'BolC8t52538H' => 'bol', 'BolC8t52539H' => 'bol', 'BolC9t56681H' => 'bol', 'BolC9t58266H' => 'bol', 'BolSC21t60294H' => 'bol', 'BraA02t05670Z' => 'bra', 'BraA03t12716Z' => 'bra', 'BraA04t17685Z' => 'bra', 'BraA05t22788Z' => 'bra', 'BraA06t24032Z' => 'bra', 'BraA06t25625Z' => 'bra', 'BraA07t27930Z' => 'bra', 'BraA08t35242Z' => 'bra', 'BraA09t38609Z' => 'bra', 'BraA10t43905Z' => 'bra', 'C02p11060' => 'bna', 'C03p42990' => 'bna', 'C03p67310' => 'bna', 'C04p56990' => 'bna', 'C04p58660' => 'bna', 'C05p09890' => 'bna', 'C05p59680' => 'bna', 'C06p19830' => 'bna', 'C06p53040' => 'bna', 'C07p15230' => 'bna', 'C08p50070' => 'bna', 'C08p50090' => 'bna', 'C09p38330' => 'bna', 'C09p53940' => 'bna', 'CAN.G1014.1' => 'can', 'CAN.G644.30' => 'can', 'CAN.G84.47' => 'can', 'CAN.G919.8' => 'can', 'CANSAT54G0113' => 'cansat', 'CANSAT54G1286' => 'cansat', 'CANSAT64G1020' => 'cansat', 'CARHR008080' => 'chi', 'CARHR008090' => 'chi', 'CARHR012130' => 'chi', 'CARHR038390' => 'chi', 'CARHR082330' => 'chi', 'CARHR120520' => 'chi', 'CARHR151470' => 'chi', 'CARHR190950' => 'chi', 'Carub.0001s0760' => 'cru', 'Carub.0001s1146' => 'cru', 'Carub.0003s0721' => 'cru', 'Carub.0004s0858' => 'cru', 'Carub.0005s1040' => 'cru', 'Carub.0006s2035' => 'cru', 'Carub.0015s0005' => 'cru', 'Ca_01607_v3' => 'car', 'Ca_01677_v3' => 'car', 'Ca_06087_v3' => 'car', 'Ca_19238_v3' => 'car', 'Ca_19373_v3' => 'car', 'Ca_21079_v3' => 'car', 'CBR_g54016' => 'cbr', 'CBR_g54018' => 'cbr', 'CBR_g54020' => 'cbr', 'Cc01_g09780' => 'ccan', 'Cc01_g11680' => 'ccan', 'Cc02_g15610' => 'ccan', 'Cc05_g04350' => 'ccan', 'Cc09_g01580' => 'ccan', 'CDE01G0795' => 'cde', 'CDE02G2024' => 'cde', 'CDE02G2260' => 'cde', 'CDE02G4561' => 'cde', 'CDE05G2733' => 'cde', 'CDE05G3422' => 'cde', 'CDE06G2003' => 'cde', 'CDE08G0576' => 'cde', 'CDE09G0048' => 'cde', 'CDE11G0805' => 'cde', 'Cfa003644' => 'cfa', 'Cfa006290' => 'cfa', 'Cfa010080' => 'cfa', 'Cfa011376' => 'cfa', 'Cfa011576' => 'cfa', 'Cfa011577' => 'cfa', 'Cfa014389' => 'cfa', 'Ciclev10006044m.g' => 'ccl', 'Ciclev10006954m.g' => 'ccl', 'Ciclev10015131m.g' => 'ccl', 'Ciclev10015580m.g' => 'ccl', 'Ciclev10028359m.g' => 'ccl', 'Ciclev10028573m.g' => 'ccl', 'CiPaw.03G159300' => 'cil', 'CiPaw.04G115100' => 'cil', 'CiPaw.09G092800' => 'cil', 'CiPaw.10G071800' => 'cil', 'CiPaw.13G105800' => 'cil', 'CiPaw.13G141000' => 'cil', 'CiPaw.14G103400' => 'cil', 'ClCG01G012700' => 'cla', 'ClCG01G012720' => 'cla', 'ClCG01G021920' => 'cla', 'ClCG02G008870' => 'cla', 'ClCG02G020840' => 'cla', 'ClCG02G021930' => 'cla', 'COL.COLO4_19302' => 'col', 'COL.COLO4_25262' => 'col', 'COL.COLO4_31788' => 'col', 'Cpa.g.c34684' => 'cpa', 'Cpa.g.c36520.1' => 'cpa', 'Cpa.g.c45626' => 'cpa', 'Cpa.g.sc121.17' => 'cpa', 'Cpa.g.sc13.22' => 'cpa', 'Cpa.g.sc87.88' => 'cpa', 'Cre06.g261800' => 'cre', 'CsaV3_1G014500' => 'csa', 'CsaV3_1G014510' => 'csa', 'CsaV3_2G034880' => 'csa', 'CsaV3_6G014760' => 'csa', 'CsaV3_6G021500' => 'csa', 'CsaV3_6G048980' => 'csa', 'CSS0002511' => 'camsi', 'CSS0007556' => 'camsi', 'CSS0008532' => 'camsi', 'CSS0009709' => 'camsi', 'CSS0010486' => 'camsi', 'CSS0016768' => 'camsi', 'CSS0023512' => 'camsi', 'CSS0025341' => 'camsi', 'CSS0027999' => 'camsi', 'CSS0028944' => 'camsi', 'CSS0032292' => 'camsi', 'CSS0032464' => 'camsi', 'CSS0037153' => 'camsi', 'CSS0039256' => 'camsi', 'CSS0048392' => 'camsi', 'CSS0050458' => 'camsi', 'DCAR_004224' => 'dca', 'DCAR_006147' => 'dca', 'DCAR_006465' => 'dca', 'DCAR_008159' => 'dca', 'DCAR_012164' => 'dca', 'DCAR_019764' => 'dca', 'Dinv05418' => 'din', 'Dinv10839' => 'din', 'Dinv12521' => 'din', 'Dinv13900' => 'din', 'Dinv29426' => 'din', 'Duzib150G0263' => 'dzi', 'Duzib168G1178' => 'dzi', 'Duzib168G1924' => 'dzi', 'Duzib170G0299' => 'dzi', 'Duzib170G0813' => 'dzi', 'Duzib235G1128' => 'dzi', 'Duzib248G1060' => 'dzi', 'ECA232G1910' => 'eca', 'ECA233G4621' => 'eca', 'ECA238G1216' => 'eca', 'ECA238G1784' => 'eca', 'ECA248G1242' => 'eca', 'EL10Ac8g20071' => 'bvu', 'EL10Ac9g21086' => 'bvu', 'EL10Ac9g22407' => 'bvu', 'EL10Ac9g22412' => 'bvu', 'Eucgr.A01119' => 'egr', 'Eucgr.E04043' => 'egr', 'Eucgr.J00428' => 'egr', 'Eucgr.J00958' => 'egr', 'FAN11G3091' => 'fan', 'FAN11G3651' => 'fan', 'FAN16G2566' => 'fan', 'FAN21G3155' => 'fan', 'FAN21G3400' => 'fan', 'FAN21G3543' => 'fan', 'FAN25G0234' => 'fan', 'FAN25G1422' => 'fan', 'FAN25G3392' => 'fan', 'FvH4_3g01940' => 'fve', 'FvH4_3g29870' => 'fve', 'FvH4_3g33680' => 'fve', 'Glyma.09G004200' => 'gma', 'Glyma.11G151288' => 'gma', 'Glyma.11G189100' => 'gma', 'Glyma.12G072500' => 'gma', 'Glyma.12G085500' => 'gma', 'Glyma.12G181800' => 'gma', 'Glyma.12G193000' => 'gma', 'Glyma.13G309300' => 'gma', 'Glyma.13G319000' => 'gma', 'Glyma.17G012600' => 'gma', 'Gohir.A06G148600' => 'ghi', 'Gohir.A07G115800' => 'ghi', 'Gohir.A08G003600' => 'ghi', 'Gohir.A09G093300' => 'ghi', 'Gohir.A09G105400' => 'ghi', 'Gohir.A09G105500' => 'ghi', 'Gohir.D06G154600' => 'ghi', 'Gohir.D07G120200' => 'ghi', 'Gohir.D08G013900' => 'ghi', 'Gohir.D09G093100' => 'ghi', 'Gohir.D09G102200' => 'ghi', 'Gohir.D09G102300' => 'ghi', 'Gorai.001G129400' => 'gra', 'Gorai.004G008200' => 'gra', 'Gorai.006G109800' => 'gra', 'Gorai.006G119500' => 'gra', 'Gorai.006G121300' => 'gra', 'Gorai.010G180700' => 'gra', 'GSVIVG01012716001' => 'vvi', 'GSVIVG01025118001' => 'vvi', 'GSVIVG01030439001' => 'vvi', 'GSVIVG01031397001' => 'vvi', 'HanXRQChr01g0004201' => 'han', 'HanXRQChr02g0054941' => 'han', 'HanXRQChr05g0141811' => 'han', 'HanXRQChr07g0197751' => 'han', 'HanXRQChr11g0346691' => 'han', 'HanXRQChr13g0396971' => 'han', 'HanXRQChr14g0432951' => 'han', 'HanXRQChr14g0452001' => 'han', 'HanXRQChr15g0496681' => 'han', 'HanXRQChr17g0557491' => 'han', 'HanXRQChr17g0557501' => 'han', 'Haze_06809' => 'cav', 'Haze_12852' => 'cav', 'Haze_15850' => 'cav', 'Haze_23446' => 'cav', 'Haze_23942' => 'cav', 'Haze_23943' => 'cav', 'Hma1.2p1_0091F.1_g046450' => 'hma', 'Hma1.2p1_0128F.1_g059910' => 'hma', 'Hma1.2p1_0249F.1_g102260' => 'hma', 'Hma1.2p1_0453F.1_g156190' => 'hma', 'Hma1.2p1_0695F.1_g204380' => 'hma', 'Hma1.2p1_0749F.1_g212650' => 'hma', 'Hma1.2p1_2156F.1_g315420' => 'hma', 'Hma1.2p1_2686F.1_g326940' => 'hma', 'HPP92_006428' => 'vpl', 'HPP92_012069' => 'vpl', 'HPP92_014129' => 'vpl', 'HPP92_014133' => 'vpl', 'HPP92_017315' => 'vpl', 'HPP92_026445' => 'vpl', 'HPP92_026446' => 'vpl', 'Hund00774' => 'sun', 'Hund07682' => 'sun', 'Hund21413' => 'sun', 'Hund23462' => 'sun', 'Hund23463' => 'sun', 'Lalb_Chr03g0027911' => 'lal', 'Lalb_Chr13g0304271' => 'lal', 'Lalb_Chr19g0137471' => 'lal', 'Lalb_Chr22g0350651' => 'lal', 'Lalb_Chr24g0395151' => 'lal', 'Lj1A1231T40' => 'lonja', 'Lj1A221T48' => 'lonja', 'Lj1C924T12' => 'lonja', 'Lj2C993G6' => 'lonja', 'Lj3g0005790' => 'lja', 'Lj3g0015432' => 'lja', 'Lj3g0017722' => 'lja', 'Lj3g0018497' => 'lja', 'Lj4g0025071' => 'lja', 'Lsat_1_v5_gn_1_129680' => 'lsa', 'Lsat_1_v5_gn_2_25321' => 'lsa', 'Lsat_1_v5_gn_2_95461' => 'lsa', 'Lsat_1_v5_gn_4_159620' => 'lsa', 'Lsat_1_v5_gn_6_41301' => 'lsa', 'Lsat_1_v5_gn_6_74660' => 'lsa', 'Lsat_1_v5_gn_7_11520' => 'lsa', 'Lsat_1_v5_gn_9_67680' => 'lsa', 'Manes.04G008300' => 'mes', 'Manes.04G008400' => 'mes', 'Manes.04G026500' => 'mes', 'Manes.10G135300' => 'mes', 'Manes.11G157300' => 'mes', 'Manes.12G074000' => 'mes', 'Manes.16G006200' => 'mes', 'Manes.17G026400' => 'mes', 'Mapoly0024s0086' => 'mpo', 'Mapoly0024s0087' => 'mpo', 'Mapoly0071s0057' => 'mpo', 'Mapoly0204s0012' => 'mpo', 'MBI04_g37681_MAGBIO' => 'mbi', 'MBI05_g17779_MAGBIO' => 'mbi', 'MBI12_g31184_MAGBIO' => 'mbi', 'MBI17_g11083_MAGBIO' => 'mbi', 'MBI18_g03883_MAGBIO' => 'mbi', 'MBI18_g28940_MAGBIO' => 'mbi', 'MCO01G690' => 'mco', 'MD03G1109900' => 'mdo', 'MD03G1134800' => 'mdo', 'MD05G1348000' => 'mdo', 'MD10G1322400' => 'mdo', 'MD11G1123300' => 'mdo', 'MD11G1157600' => 'mdo', 'Medtr2g084875' => 'mtr', 'Medtr2g088130' => 'mtr', 'Medtr4g055310' => 'mtr', 'Medtr4g061070' => 'mtr', 'Medtr4g132250' => 'mtr', 'MELO3C004795.2' => 'cme', 'MELO3C004797.2' => 'cme', 'MELO3C007396.2' => 'cme', 'MELO3C019277.2' => 'cme', 'MELO3C021449.2' => 'cme', 'MELO3C025736.2' => 'cme', 'Migut.D02175' => 'egut', 'Migut.H01573' => 'egut', 'Migut.M01327' => 'egut', 'Migut.N02513' => 'egut', 'MSTRG.14638' => 'ama', 'MSTRG.18632' => 'ama', 'MSTRG.7203' => 'ama', 'Nitab4.5_0000533g0140' => 'nta', 'Nitab4.5_0000888g0150' => 'nta', 'Nitab4.5_0001453g0040' => 'nta', 'Nitab4.5_0002827g0090' => 'nta', 'Nitab4.5_0003082g0040' => 'nta', 'Nitab4.5_0007799g0040' => 'nta', 'Nitab4.5_0008983g0010' => 'nta', 'Nitab4.5_0009017g0020' => 'nta', 'Nn1g02132' => 'nnu', 'Nn1g03492' => 'nnu', 'Nn1g03493' => 'nnu', 'Nn1g03494' => 'nnu', 'Nn1g07164' => 'nnu', 'Nn1g07291' => 'nnu', 'Nn2g10655' => 'nnu', 'Nn2g11652' => 'nnu', 'Nn2g14008' => 'nnu', 'Nn3g17476' => 'nnu', 'Nn3g17477' => 'nnu', 'Nn4g22370' => 'nnu', 'Nn4g25255' => 'nnu', 'Nn5g27755' => 'nnu', 'Nn6g34260' => 'nnu', 'Nn6g35041' => 'nnu', 'Oeu005924.1' => 'oeu', 'Oeu008383.1' => 'oeu', 'Oeu014928.1' => 'oeu', 'Oeu019889.1' => 'oeu', 'Oeu022271.1' => 'oeu', 'Oeu025271.1' => 'oeu', 'Oeu036302.1' => 'oeu', 'Oeu044100.1' => 'oeu', 'Os01g0528300' => 'osa', 'Os03g0286200' => 'osa', 'Os04g0406600' => 'osa', 'Os07g0512000' => 'osa', 'Os07g0694600' => 'osa', 'Os08g0411000' => 'osa', 'Os09g0565700' => 'osa', 'Os09g0566050' => 'osa', 'Os10g0523700' => 'osa', 'Peaxi162Scf00002g00514' => 'pax', 'Peaxi162Scf00047g01817' => 'pax', 'Peaxi162Scf00114g00001' => 'pax', 'Peaxi162Scf00147g00613' => 'pax', 'Peaxi162Scf00389g00425' => 'pax', 'PGR042G1139' => 'pgr', 'PGR042G3273' => 'pgr', 'PGR102G2180' => 'pgr', 'PGR119G0234' => 'pgr', 'PGR119G0668' => 'pgr', 'PGSC0003DMG400007122' => 'stu', 'PGSC0003DMG400016478' => 'stu', 'PGSC0003DMG400025374' => 'stu', 'PGSC0003DMG400026536' => 'stu', 'Phvul.003G079600' => 'pvu', 'Phvul.005G115600' => 'pvu', 'Phvul.005G127100' => 'pvu', 'Phvul.006G149500' => 'pvu', 'Phvul.006G149600' => 'pvu', 'Phvul.011G071800' => 'pvu', 'Phvul.011G090400' => 'pvu', 'Potri.004G013400' => 'ptr', 'Potri.004G188100' => 'ptr', 'Potri.008G195500' => 'ptr', 'Potri.009G148800' => 'ptr', 'Potri.011G004700' => 'ptr', 'Pp3c17_22810' => 'ppa', 'Pp3c18_4480' => 'ppa', 'Pp3c19_13030' => 'ppa', 'Pp3c1_33620' => 'ppa', 'Pp3c2_9380' => 'ppa', 'PRCOL_00001023' => 'pco', 'Prupe.3G216300' => 'ppe', 'Prupe.4G019500' => 'ppe', 'Prupe.6G092500' => 'ppe', 'Prupe.6G119200' => 'ppe', 'Psat0s1945g0080' => 'psa', 'Psat0s4167g0040' => 'psa', 'Psat1g185800' => 'psa', 'Psat4g006440' => 'psa', 'Psat4g006480' => 'psa', 'Psat4g168120' => 'psa', 'Psat5g255680' => 'psa', 'Psat5g261760' => 'psa', 'Psat7g222120' => 'psa', 'PSO063G7252' => 'pso', 'PSO170G4778' => 'pso', 'PSO210G2249' => 'pso', 'PSO339G2411' => 'pso', 'PSO339G2457' => 'pso', 'PSO339G2854' => 'pso', 'PSO339G4288' => 'pso', 'PSO339G4615' => 'pso', 'PSO384G2796' => 'pso', 'PSO384G2940' => 'pso', 'PSO384G4227' => 'pso', 'PSO478G1425' => 'pso', 'PSO541G3863' => 'pso', 'PSO675G0507' => 'pso', 'PSO782G0338' => 'pso', 'PSO832G0644' => 'pso', 'QL01p013664' => 'qlo', 'QL01p036598' => 'qlo', 'QL05p072984' => 'qlo', 'QL08p005768' => 'qlo', 'QL08p032743' => 'qlo', 'QL93p0073_0439' => 'qlo', 'QL93p0073_0444' => 'qlo', 'RcHm_v2.0_Chr5g0002851' => 'rch', 'RcHm_v2.0_Chr5g0055201' => 'rch', 'RcHm_v2.0_Chr5g0061191' => 'rch', 'RcHm_v2.0_Chr7g0203231' => 'rch', 'Rhsim01G0208100' => 'rsi', 'Rhsim01G0208200' => 'rsi', 'Rhsim02G0106500' => 'rsi', 'Rhsim03G0107900' => 'rsi', 'Rhsim06G0163400' => 'rsi', 'Rhsim13G0105200' => 'rsi', 'Sabra04G0006300' => 'sbr', 'Sabra04G0127000' => 'sbr', 'Sabra08G0148700' => 'sbr', 'Sabra09G0117400' => 'sbr', 'SalBow1G3326' => 'sbo', 'SalBow3G3228' => 'sbo', 'SalBow6G1634' => 'sbo', 'SalBow6G3603' => 'sbo', 'SalBow6G5266' => 'sbo', 'SalBow7G2265' => 'sbo', 'SalBow8G0850' => 'sbo', 'SalBow8G2592' => 'sbo', 'Sc05g0009240' => 'sci', 'Sc12g0002300' => 'sci', 'Sc21g0000100' => 'sci', 'Sc21g0004720' => 'sci', 'Sed0002949' => 'sed', 'Sed0004114' => 'sed', 'Sed0004306' => 'sed', 'Sed0006172' => 'sed', 'Sed0008413' => 'sed', 'Sed0013809' => 'sed', 'Sed0019556' => 'sed', 'SEGI_03570' => 'sgi', 'SEGI_07859' => 'sgi', 'SEGI_15042' => 'sgi', 'SEGI_16263' => 'sgi', 'SEGI_16552' => 'sgi', 'SEGI_24331' => 'sgi', 'SEGI_27316' => 'sgi', 'SEGI_29521' => 'sgi', 'SEGI_41342' => 'sgi', 'SGA_v2.0_scaffold27G11617' => 'sas', 'SGA_v2.0_scaffold316G48428' => 'sas', 'SGA_v2.0_scaffold49G18261' => 'sas', 'SGA_v2.0_scaffold7G03831' => 'sas', 'SGA_v2.0_scaffold93G28359' => 'sas', 'SHI02210' => 'shi', 'SHI06028' => 'shi', 'SHI06321' => 'shi', 'SMO111G0012' => 'smo', 'SMO228G0080' => 'smo', 'SMO356G0756' => 'smo', 'Solyc02g080620.3' => 'sly', 'Solyc06g074530.1' => 'sly', 'Solyc11g066890.1' => 'sly', 'Solyc11g072520.3' => 'sly', 'Sopen02g025330' => 'spe', 'Sopen06g031000' => 'spe', 'Sopen09g008240' => 'spe', 'Sopen09g025210' => 'spe', 'Sopen11g026600' => 'spe', 'Sopen11g030170' => 'spe', 'Sp1g10420' => 'spa', 'Sp3g06570' => 'spa', 'Sp4g10660' => 'spa', 'Sp5g16460' => 'spa', 'Sp6g22710' => 'spa', 'TAR365G0112' => 'tar', 'TAR369G0717' => 'tar', 'TAR374G0976' => 'tar', 'TAR623G1128' => 'tar', 'TAR626G1937' => 'tar', 'TAR627G0123' => 'tar', 'TAR628G0305' => 'tar', 'TAR636G1176' => 'tar', 'TAR636G2442' => 'tar', 'THA.LOC104800556' => 'tha', 'THA.LOC104809501' => 'tha', 'THA.LOC104815126' => 'tha', 'THA.LOC104815732' => 'tha', 'THA.LOC104823528' => 'tha', 'Thecc.02G365600' => 'tca', 'Thecc.06G222300' => 'tca', 'Thecc.09G261800' => 'tca', 'Thecc.09G291400' => 'tca', 'Thhalv10003028m.g' => 'esa', 'Thhalv10007886m.g' => 'esa', 'Thhalv10016085m.g' => 'esa', 'Thhalv10016681m.g' => 'esa', 'Thhalv10020951m.g' => 'esa', 'TPR.G15598' => 'tpr', 'TPR.G29305' => 'tpr', 'TPR.G32395' => 'tpr', 'TPR.G36998' => 'tpr', 'TPR.G4227' => 'tpr', 'TWI18G1433' => 'twi', 'TWI31G0755' => 'twi', 'TWI38G0912' => 'twi', 'TWI75G1097' => 'twi', 'TWI75G1619' => 'twi', 'TWI79G1336' => 'twi', 'unitig_0.g943' => 'ugi', 'unitig_0.g944' => 'ugi', 'unitig_22.g6646' => 'ugi', 'unitig_37.g12681' => 'ugi', 'unitig_8.g3290' => 'ugi', 'vmacro03278' => 'vma', 'vmacro12197' => 'vma', 'vmacro14478' => 'vma', 'vmacro15787' => 'vma', 'vmacro15789' => 'vma', 'vmacro15790' => 'vma', 'vmacro15806' => 'vma', 'vmacro22907' => 'vma', 'vmacro22908' => 'vma', 'vmacro22909' => 'vma', 'vmacro23108' => 'vma', 'VMungo0540G0540' => 'vmu', 'VMungo0540G2468' => 'vmu', 'VMungo1080G0390' => 'vmu', 'VMungo1080G1165' => 'vmu', 'VMungo1127G0170' => 'vmu', 'VMungo1127G2099' => 'vmu', 'VMungo1215G3013' => 'vmu', 'Zm00001eb013110' => 'zma', 'Zm00001eb084260' => 'zma', 'Zm00001eb096110' => 'zma', 'Zm00001eb217510' => 'zma', 'Zm00001eb322550' => 'zma', 'Zm00001eb390770' => 'zma', 'Zm00001eb397170' => 'zma', 'Zm00001eb404610' => 'zma', 'Zm00001eb421790' => 'zma' ), 'gf_id' => 'HOM05D000911', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000911' ), 'data_identifier' => 'HOM05D000911', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000911', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27780' => 'bna', 'A03p35380' => 'bna', 'A04p21160' => 'bna', 'A05p40570' => 'bna', 'A06p26900' => 'bna', 'A08p33230' => 'bna', 'A09p65960' => 'bna', 'A10p18290' => 'bna', 'Aa31LG1G12990' => 'aar', 'Aa31LG1G2980' => 'aar', 'Aa31LG4G14320' => 'aar', 'Aa31LG7G11800' => 'aar', 'Aa31sc36G50' => 'aar', 'Aa31sc36G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3721' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5459' => 'aag', 'Actinidia03028' => 'ach', 'Actinidia03753' => 'ach', 'Actinidia04187' => 'ach', 'Actinidia05509' => 'ach', 'Actinidia24180' => 'ach', 'Actinidia26906' => 'ach', 'Actinidia37097' => 'ach', 'Actinidia38249' => 'ach', 'Ah.01g003470' => 'amhyb', 'Ah.01g004580' => 'amhyb', 'Ah.01g014850' => 'amhyb', 'Ah.01g016830' => 'amhyb', 'Ah.14g088000' => 'amhyb', 'AL1G22980' => 'aly', 'AL3G18990' => 'aly', 'AL4G22440' => 'aly', 'AL4G33180' => 'aly', 'AL5G22920' => 'aly', 'AL6G33660' => 'aly', 'AL8G20720' => 'aly', 'Aqoxy1G00935' => 'aox', 'Aqoxy1G02094' => 'aox', 'Aqoxy2G01239' => 'aox', 'Aqoxy4G01870' => 'aox', 'Aqoxy7G00450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.36ZVTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71EM27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5D6C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH3WRE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3NCM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RIM768' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YB5YRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z36GDV' => 'arhy', 'AT1G08250' => 'ath', 'AT1G11790' => 'ath', 'AT2G27820' => 'ath', 'AT3G07630' => 'ath', 'AT3G44720' => 'ath', 'AT5G22630' => 'ath', 'ATR0693G304' => 'atr', 'ATR0794G109' => 'atr', 'ATR0820G120' => 'atr', 'ATR1159G064' => 'atr', 'Atru.chr10.2239' => 'acertr', 'Atru.chr3.3371' => 'acertr', 'Atru.chr6.3202' => 'acertr', 'AUR62006499' => 'cqu', 'AUR62012718' => 'cqu', 'AUR62021938' => 'cqu', 'AUR62023932' => 'cqu', 'AUR62025034' => 'cqu', 'AUR62025035' => 'cqu', 'AUR62038307' => 'cqu', 'AUR62043466' => 'cqu', 'BcaB02g10748' => 'bca', 'BcaB03g13231' => 'bca', 'BcaB03g14689' => 'bca', 'BcaB05g22716' => 'bca', 'BcaB06g28172' => 'bca', 'BcaB08g36413' => 'bca', 'BcaC01g02186' => 'bca', 'BcaC01g04272' => 'bca', 'BcaC02g08080' => 'bca', 'BcaC02g08227' => 'bca', 'BcaC03g13901' => 'bca', 'BcaC04g19593' => 'bca', 'BcaC04g20874' => 'bca', 'BcaC05g29557' => 'bca', 'BcaC06g35505' => 'bca', 'BcaC07g41954' => 'bca', 'BcaC07g41955' => 'bca', 'BcaC07g41956' => 'bca', 'BcaC07g42519' => 'bca', 'BcaC07g42520' => 'bca', 'BcaC07g42523' => 'bca', 'BcaC07g42524' => 'bca', 'BcaC07g42525' => 'bca', 'BcaC08g47480' => 'bca', 'BcaC08g47481' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00530' => 'bna', 'BolC2t07178H' => 'bol', 'BolC3t16567H' => 'bol', 'BolC4t27234H' => 'bol', 'BolC5t29728H' => 'bol', 'BolC5t34622H' => 'bol', 'BolC6t40321H' => 'bol', 'BolC7t42028H' => 'bol', 'BolC8t49125H' => 'bol', 'BolC8t52538H' => 'bol', 'BolC8t52539H' => 'bol', 'BolC9t56681H' => 'bol', 'BolC9t58266H' => 'bol', 'BolSC21t60294H' => 'bol', 'BraA02t05670Z' => 'bra', 'BraA03t12716Z' => 'bra', 'BraA04t17685Z' => 'bra', 'BraA05t22788Z' => 'bra', 'BraA06t24032Z' => 'bra', 'BraA06t25625Z' => 'bra', 'BraA07t27930Z' => 'bra', 'BraA08t35242Z' => 'bra', 'BraA09t38609Z' => 'bra', 'BraA10t43905Z' => 'bra', 'C02p11060' => 'bna', 'C03p42990' => 'bna', 'C03p67310' => 'bna', 'C04p56990' => 'bna', 'C04p58660' => 'bna', 'C05p09890' => 'bna', 'C05p59680' => 'bna', 'C06p19830' => 'bna', 'C06p53040' => 'bna', 'C07p15230' => 'bna', 'C08p50070' => 'bna', 'C08p50090' => 'bna', 'C09p38330' => 'bna', 'C09p53940' => 'bna', 'CAN.G1014.1' => 'can', 'CAN.G644.30' => 'can', 'CAN.G84.47' => 'can', 'CAN.G919.8' => 'can', 'CANSAT54G0113' => 'cansat', 'CANSAT54G1286' => 'cansat', 'CANSAT64G1020' => 'cansat', 'CARHR008080' => 'chi', 'CARHR008090' => 'chi', 'CARHR012130' => 'chi', 'CARHR038390' => 'chi', 'CARHR082330' => 'chi', 'CARHR120520' => 'chi', 'CARHR151470' => 'chi', 'CARHR190950' => 'chi', 'Carub.0001s0760' => 'cru', 'Carub.0001s1146' => 'cru', 'Carub.0003s0721' => 'cru', 'Carub.0004s0858' => 'cru', 'Carub.0005s1040' => 'cru', 'Carub.0006s2035' => 'cru', 'Carub.0015s0005' => 'cru', 'Ca_01607_v3' => 'car', 'Ca_01677_v3' => 'car', 'Ca_06087_v3' => 'car', 'Ca_19238_v3' => 'car', 'Ca_19373_v3' => 'car', 'Ca_21079_v3' => 'car', 'CBR_g54016' => 'cbr', 'CBR_g54018' => 'cbr', 'CBR_g54020' => 'cbr', 'Cc01_g09780' => 'ccan', 'Cc01_g11680' => 'ccan', 'Cc02_g15610' => 'ccan', 'Cc05_g04350' => 'ccan', 'Cc09_g01580' => 'ccan', 'CDE01G0795' => 'cde', 'CDE02G2024' => 'cde', 'CDE02G2260' => 'cde', 'CDE02G4561' => 'cde', 'CDE05G2733' => 'cde', 'CDE05G3422' => 'cde', 'CDE06G2003' => 'cde', 'CDE08G0576' => 'cde', 'CDE09G0048' => 'cde', 'CDE11G0805' => 'cde', 'Cfa003644' => 'cfa', 'Cfa006290' => 'cfa', 'Cfa010080' => 'cfa', 'Cfa011376' => 'cfa', 'Cfa011576' => 'cfa', 'Cfa011577' => 'cfa', 'Cfa014389' => 'cfa', 'Ciclev10006044m.g' => 'ccl', 'Ciclev10006954m.g' => 'ccl', 'Ciclev10015131m.g' => 'ccl', 'Ciclev10015580m.g' => 'ccl', 'Ciclev10028359m.g' => 'ccl', 'Ciclev10028573m.g' => 'ccl', 'CiPaw.03G159300' => 'cil', 'CiPaw.04G115100' => 'cil', 'CiPaw.09G092800' => 'cil', 'CiPaw.10G071800' => 'cil', 'CiPaw.13G105800' => 'cil', 'CiPaw.13G141000' => 'cil', 'CiPaw.14G103400' => 'cil', 'ClCG01G012700' => 'cla', 'ClCG01G012720' => 'cla', 'ClCG01G021920' => 'cla', 'ClCG02G008870' => 'cla', 'ClCG02G020840' => 'cla', 'ClCG02G021930' => 'cla', 'COL.COLO4_19302' => 'col', 'COL.COLO4_25262' => 'col', 'COL.COLO4_31788' => 'col', 'Cpa.g.c34684' => 'cpa', 'Cpa.g.c36520.1' => 'cpa', 'Cpa.g.c45626' => 'cpa', 'Cpa.g.sc121.17' => 'cpa', 'Cpa.g.sc13.22' => 'cpa', 'Cpa.g.sc87.88' => 'cpa', 'Cre06.g261800' => 'cre', 'CsaV3_1G014500' => 'csa', 'CsaV3_1G014510' => 'csa', 'CsaV3_2G034880' => 'csa', 'CsaV3_6G014760' => 'csa', 'CsaV3_6G021500' => 'csa', 'CsaV3_6G048980' => 'csa', 'CSS0002511' => 'camsi', 'CSS0007556' => 'camsi', 'CSS0008532' => 'camsi', 'CSS0009709' => 'camsi', 'CSS0010486' => 'camsi', 'CSS0016768' => 'camsi', 'CSS0023512' => 'camsi', 'CSS0025341' => 'camsi', 'CSS0027999' => 'camsi', 'CSS0028944' => 'camsi', 'CSS0032292' => 'camsi', 'CSS0032464' => 'camsi', 'CSS0037153' => 'camsi', 'CSS0039256' => 'camsi', 'CSS0048392' => 'camsi', 'CSS0050458' => 'camsi', 'DCAR_004224' => 'dca', 'DCAR_006147' => 'dca', 'DCAR_006465' => 'dca', 'DCAR_008159' => 'dca', 'DCAR_012164' => 'dca', 'DCAR_019764' => 'dca', 'Dinv05418' => 'din', 'Dinv10839' => 'din', 'Dinv12521' => 'din', 'Dinv13900' => 'din', 'Dinv29426' => 'din', 'Duzib150G0263' => 'dzi', 'Duzib168G1178' => 'dzi', 'Duzib168G1924' => 'dzi', 'Duzib170G0299' => 'dzi', 'Duzib170G0813' => 'dzi', 'Duzib235G1128' => 'dzi', 'Duzib248G1060' => 'dzi', 'ECA232G1910' => 'eca', 'ECA233G4621' => 'eca', 'ECA238G1216' => 'eca', 'ECA238G1784' => 'eca', 'ECA248G1242' => 'eca', 'EL10Ac8g20071' => 'bvu', 'EL10Ac9g21086' => 'bvu', 'EL10Ac9g22407' => 'bvu', 'EL10Ac9g22412' => 'bvu', 'Eucgr.A01119' => 'egr', 'Eucgr.E04043' => 'egr', 'Eucgr.J00428' => 'egr', 'Eucgr.J00958' => 'egr', 'FAN11G3091' => 'fan', 'FAN11G3651' => 'fan', 'FAN16G2566' => 'fan', 'FAN21G3155' => 'fan', 'FAN21G3400' => 'fan', 'FAN21G3543' => 'fan', 'FAN25G0234' => 'fan', 'FAN25G1422' => 'fan', 'FAN25G3392' => 'fan', 'FvH4_3g01940' => 'fve', 'FvH4_3g29870' => 'fve', 'FvH4_3g33680' => 'fve', 'Glyma.09G004200' => 'gma', 'Glyma.11G151288' => 'gma', 'Glyma.11G189100' => 'gma', 'Glyma.12G072500' => 'gma', 'Glyma.12G085500' => 'gma', 'Glyma.12G181800' => 'gma', 'Glyma.12G193000' => 'gma', 'Glyma.13G309300' => 'gma', 'Glyma.13G319000' => 'gma', 'Glyma.17G012600' => 'gma', 'Gohir.A06G148600' => 'ghi', 'Gohir.A07G115800' => 'ghi', 'Gohir.A08G003600' => 'ghi', 'Gohir.A09G093300' => 'ghi', 'Gohir.A09G105400' => 'ghi', 'Gohir.A09G105500' => 'ghi', 'Gohir.D06G154600' => 'ghi', 'Gohir.D07G120200' => 'ghi', 'Gohir.D08G013900' => 'ghi', 'Gohir.D09G093100' => 'ghi', 'Gohir.D09G102200' => 'ghi', 'Gohir.D09G102300' => 'ghi', 'Gorai.001G129400' => 'gra', 'Gorai.004G008200' => 'gra', 'Gorai.006G109800' => 'gra', 'Gorai.006G119500' => 'gra', 'Gorai.006G121300' => 'gra', 'Gorai.010G180700' => 'gra', 'GSVIVG01012716001' => 'vvi', 'GSVIVG01025118001' => 'vvi', 'GSVIVG01030439001' => 'vvi', 'GSVIVG01031397001' => 'vvi', 'HanXRQChr01g0004201' => 'han', 'HanXRQChr02g0054941' => 'han', 'HanXRQChr05g0141811' => 'han', 'HanXRQChr07g0197751' => 'han', 'HanXRQChr11g0346691' => 'han', 'HanXRQChr13g0396971' => 'han', 'HanXRQChr14g0432951' => 'han', 'HanXRQChr14g0452001' => 'han', 'HanXRQChr15g0496681' => 'han', 'HanXRQChr17g0557491' => 'han', 'HanXRQChr17g0557501' => 'han', 'Haze_06809' => 'cav', 'Haze_12852' => 'cav', 'Haze_15850' => 'cav', 'Haze_23446' => 'cav', 'Haze_23942' => 'cav', 'Haze_23943' => 'cav', 'Hma1.2p1_0091F.1_g046450' => 'hma', 'Hma1.2p1_0128F.1_g059910' => 'hma', 'Hma1.2p1_0249F.1_g102260' => 'hma', 'Hma1.2p1_0453F.1_g156190' => 'hma', 'Hma1.2p1_0695F.1_g204380' => 'hma', 'Hma1.2p1_0749F.1_g212650' => 'hma', 'Hma1.2p1_2156F.1_g315420' => 'hma', 'Hma1.2p1_2686F.1_g326940' => 'hma', 'HPP92_006428' => 'vpl', 'HPP92_012069' => 'vpl', 'HPP92_014129' => 'vpl', 'HPP92_014133' => 'vpl', 'HPP92_017315' => 'vpl', 'HPP92_026445' => 'vpl', 'HPP92_026446' => 'vpl', 'Hund00774' => 'sun', 'Hund07682' => 'sun', 'Hund21413' => 'sun', 'Hund23462' => 'sun', 'Hund23463' => 'sun', 'Lalb_Chr03g0027911' => 'lal', 'Lalb_Chr13g0304271' => 'lal', 'Lalb_Chr19g0137471' => 'lal', 'Lalb_Chr22g0350651' => 'lal', 'Lalb_Chr24g0395151' => 'lal', 'Lj1A1231T40' => 'lonja', 'Lj1A221T48' => 'lonja', 'Lj1C924T12' => 'lonja', 'Lj2C993G6' => 'lonja', 'Lj3g0005790' => 'lja', 'Lj3g0015432' => 'lja', 'Lj3g0017722' => 'lja', 'Lj3g0018497' => 'lja', 'Lj4g0025071' => 'lja', 'Lsat_1_v5_gn_1_129680' => 'lsa', 'Lsat_1_v5_gn_2_25321' => 'lsa', 'Lsat_1_v5_gn_2_95461' => 'lsa', 'Lsat_1_v5_gn_4_159620' => 'lsa', 'Lsat_1_v5_gn_6_41301' => 'lsa', 'Lsat_1_v5_gn_6_74660' => 'lsa', 'Lsat_1_v5_gn_7_11520' => 'lsa', 'Lsat_1_v5_gn_9_67680' => 'lsa', 'Manes.04G008300' => 'mes', 'Manes.04G008400' => 'mes', 'Manes.04G026500' => 'mes', 'Manes.10G135300' => 'mes', 'Manes.11G157300' => 'mes', 'Manes.12G074000' => 'mes', 'Manes.16G006200' => 'mes', 'Manes.17G026400' => 'mes', 'Mapoly0024s0086' => 'mpo', 'Mapoly0024s0087' => 'mpo', 'Mapoly0071s0057' => 'mpo', 'Mapoly0204s0012' => 'mpo', 'MBI04_g37681_MAGBIO' => 'mbi', 'MBI05_g17779_MAGBIO' => 'mbi', 'MBI12_g31184_MAGBIO' => 'mbi', 'MBI17_g11083_MAGBIO' => 'mbi', 'MBI18_g03883_MAGBIO' => 'mbi', 'MBI18_g28940_MAGBIO' => 'mbi', 'MCO01G690' => 'mco', 'MD03G1109900' => 'mdo', 'MD03G1134800' => 'mdo', 'MD05G1348000' => 'mdo', 'MD10G1322400' => 'mdo', 'MD11G1123300' => 'mdo', 'MD11G1157600' => 'mdo', 'Medtr2g084875' => 'mtr', 'Medtr2g088130' => 'mtr', 'Medtr4g055310' => 'mtr', 'Medtr4g061070' => 'mtr', 'Medtr4g132250' => 'mtr', 'MELO3C004795.2' => 'cme', 'MELO3C004797.2' => 'cme', 'MELO3C007396.2' => 'cme', 'MELO3C019277.2' => 'cme', 'MELO3C021449.2' => 'cme', 'MELO3C025736.2' => 'cme', 'Migut.D02175' => 'egut', 'Migut.H01573' => 'egut', 'Migut.M01327' => 'egut', 'Migut.N02513' => 'egut', 'MSTRG.14638' => 'ama', 'MSTRG.18632' => 'ama', 'MSTRG.7203' => 'ama', 'Nitab4.5_0000533g0140' => 'nta', 'Nitab4.5_0000888g0150' => 'nta', 'Nitab4.5_0001453g0040' => 'nta', 'Nitab4.5_0002827g0090' => 'nta', 'Nitab4.5_0003082g0040' => 'nta', 'Nitab4.5_0007799g0040' => 'nta', 'Nitab4.5_0008983g0010' => 'nta', 'Nitab4.5_0009017g0020' => 'nta', 'Nn1g02132' => 'nnu', 'Nn1g03492' => 'nnu', 'Nn1g03493' => 'nnu', 'Nn1g03494' => 'nnu', 'Nn1g07164' => 'nnu', 'Nn1g07291' => 'nnu', 'Nn2g10655' => 'nnu', 'Nn2g11652' => 'nnu', 'Nn2g14008' => 'nnu', 'Nn3g17476' => 'nnu', 'Nn3g17477' => 'nnu', 'Nn4g22370' => 'nnu', 'Nn4g25255' => 'nnu', 'Nn5g27755' => 'nnu', 'Nn6g34260' => 'nnu', 'Nn6g35041' => 'nnu', 'Oeu005924.1' => 'oeu', 'Oeu008383.1' => 'oeu', 'Oeu014928.1' => 'oeu', 'Oeu019889.1' => 'oeu', 'Oeu022271.1' => 'oeu', 'Oeu025271.1' => 'oeu', 'Oeu036302.1' => 'oeu', 'Oeu044100.1' => 'oeu', 'Os01g0528300' => 'osa', 'Os03g0286200' => 'osa', 'Os04g0406600' => 'osa', 'Os07g0512000' => 'osa', 'Os07g0694600' => 'osa', 'Os08g0411000' => 'osa', 'Os09g0565700' => 'osa', 'Os09g0566050' => 'osa', 'Os10g0523700' => 'osa', 'Peaxi162Scf00002g00514' => 'pax', 'Peaxi162Scf00047g01817' => 'pax', 'Peaxi162Scf00114g00001' => 'pax', 'Peaxi162Scf00147g00613' => 'pax', 'Peaxi162Scf00389g00425' => 'pax', 'PGR042G1139' => 'pgr', 'PGR042G3273' => 'pgr', 'PGR102G2180' => 'pgr', 'PGR119G0234' => 'pgr', 'PGR119G0668' => 'pgr', 'PGSC0003DMG400007122' => 'stu', 'PGSC0003DMG400016478' => 'stu', 'PGSC0003DMG400025374' => 'stu', 'PGSC0003DMG400026536' => 'stu', 'Phvul.003G079600' => 'pvu', 'Phvul.005G115600' => 'pvu', 'Phvul.005G127100' => 'pvu', 'Phvul.006G149500' => 'pvu', 'Phvul.006G149600' => 'pvu', 'Phvul.011G071800' => 'pvu', 'Phvul.011G090400' => 'pvu', 'Potri.004G013400' => 'ptr', 'Potri.004G188100' => 'ptr', 'Potri.008G195500' => 'ptr', 'Potri.009G148800' => 'ptr', 'Potri.011G004700' => 'ptr', 'Pp3c17_22810' => 'ppa', 'Pp3c18_4480' => 'ppa', 'Pp3c19_13030' => 'ppa', 'Pp3c1_33620' => 'ppa', 'Pp3c2_9380' => 'ppa', 'PRCOL_00001023' => 'pco', 'Prupe.3G216300' => 'ppe', 'Prupe.4G019500' => 'ppe', 'Prupe.6G092500' => 'ppe', 'Prupe.6G119200' => 'ppe', 'Psat0s1945g0080' => 'psa', 'Psat0s4167g0040' => 'psa', 'Psat1g185800' => 'psa', 'Psat4g006440' => 'psa', 'Psat4g006480' => 'psa', 'Psat4g168120' => 'psa', 'Psat5g255680' => 'psa', 'Psat5g261760' => 'psa', 'Psat7g222120' => 'psa', 'PSO063G7252' => 'pso', 'PSO170G4778' => 'pso', 'PSO210G2249' => 'pso', 'PSO339G2411' => 'pso', 'PSO339G2457' => 'pso', 'PSO339G2854' => 'pso', 'PSO339G4288' => 'pso', 'PSO339G4615' => 'pso', 'PSO384G2796' => 'pso', 'PSO384G2940' => 'pso', 'PSO384G4227' => 'pso', 'PSO478G1425' => 'pso', 'PSO541G3863' => 'pso', 'PSO675G0507' => 'pso', 'PSO782G0338' => 'pso', 'PSO832G0644' => 'pso', 'QL01p013664' => 'qlo', 'QL01p036598' => 'qlo', 'QL05p072984' => 'qlo', 'QL08p005768' => 'qlo', 'QL08p032743' => 'qlo', 'QL93p0073_0439' => 'qlo', 'QL93p0073_0444' => 'qlo', 'RcHm_v2.0_Chr5g0002851' => 'rch', 'RcHm_v2.0_Chr5g0055201' => 'rch', 'RcHm_v2.0_Chr5g0061191' => 'rch', 'RcHm_v2.0_Chr7g0203231' => 'rch', 'Rhsim01G0208100' => 'rsi', 'Rhsim01G0208200' => 'rsi', 'Rhsim02G0106500' => 'rsi', 'Rhsim03G0107900' => 'rsi', 'Rhsim06G0163400' => 'rsi', 'Rhsim13G0105200' => 'rsi', 'Sabra04G0006300' => 'sbr', 'Sabra04G0127000' => 'sbr', 'Sabra08G0148700' => 'sbr', 'Sabra09G0117400' => 'sbr', 'SalBow1G3326' => 'sbo', 'SalBow3G3228' => 'sbo', 'SalBow6G1634' => 'sbo', 'SalBow6G3603' => 'sbo', 'SalBow6G5266' => 'sbo', 'SalBow7G2265' => 'sbo', 'SalBow8G0850' => 'sbo', 'SalBow8G2592' => 'sbo', 'Sc05g0009240' => 'sci', 'Sc12g0002300' => 'sci', 'Sc21g0000100' => 'sci', 'Sc21g0004720' => 'sci', 'Sed0002949' => 'sed', 'Sed0004114' => 'sed', 'Sed0004306' => 'sed', 'Sed0006172' => 'sed', 'Sed0008413' => 'sed', 'Sed0013809' => 'sed', 'Sed0019556' => 'sed', 'SEGI_03570' => 'sgi', 'SEGI_07859' => 'sgi', 'SEGI_15042' => 'sgi', 'SEGI_16263' => 'sgi', 'SEGI_16552' => 'sgi', 'SEGI_24331' => 'sgi', 'SEGI_27316' => 'sgi', 'SEGI_29521' => 'sgi', 'SEGI_41342' => 'sgi', 'SGA_v2.0_scaffold27G11617' => 'sas', 'SGA_v2.0_scaffold316G48428' => 'sas', 'SGA_v2.0_scaffold49G18261' => 'sas', 'SGA_v2.0_scaffold7G03831' => 'sas', 'SGA_v2.0_scaffold93G28359' => 'sas', 'SHI02210' => 'shi', 'SHI06028' => 'shi', 'SHI06321' => 'shi', 'SMO111G0012' => 'smo', 'SMO228G0080' => 'smo', 'SMO356G0756' => 'smo', 'Solyc02g080620.3' => 'sly', 'Solyc06g074530.1' => 'sly', 'Solyc11g066890.1' => 'sly', 'Solyc11g072520.3' => 'sly', 'Sopen02g025330' => 'spe', 'Sopen06g031000' => 'spe', 'Sopen09g008240' => 'spe', 'Sopen09g025210' => 'spe', 'Sopen11g026600' => 'spe', 'Sopen11g030170' => 'spe', 'Sp1g10420' => 'spa', 'Sp3g06570' => 'spa', 'Sp4g10660' => 'spa', 'Sp5g16460' => 'spa', 'Sp6g22710' => 'spa', 'TAR365G0112' => 'tar', 'TAR369G0717' => 'tar', 'TAR374G0976' => 'tar', 'TAR623G1128' => 'tar', 'TAR626G1937' => 'tar', 'TAR627G0123' => 'tar', 'TAR628G0305' => 'tar', 'TAR636G1176' => 'tar', 'TAR636G2442' => 'tar', 'THA.LOC104800556' => 'tha', 'THA.LOC104809501' => 'tha', 'THA.LOC104815126' => 'tha', 'THA.LOC104815732' => 'tha', 'THA.LOC104823528' => 'tha', 'Thecc.02G365600' => 'tca', 'Thecc.06G222300' => 'tca', 'Thecc.09G261800' => 'tca', 'Thecc.09G291400' => 'tca', 'Thhalv10003028m.g' => 'esa', 'Thhalv10007886m.g' => 'esa', 'Thhalv10016085m.g' => 'esa', 'Thhalv10016681m.g' => 'esa', 'Thhalv10020951m.g' => 'esa', 'TPR.G15598' => 'tpr', 'TPR.G29305' => 'tpr', 'TPR.G32395' => 'tpr', 'TPR.G36998' => 'tpr', 'TPR.G4227' => 'tpr', 'TWI18G1433' => 'twi', 'TWI31G0755' => 'twi', 'TWI38G0912' => 'twi', 'TWI75G1097' => 'twi', 'TWI75G1619' => 'twi', 'TWI79G1336' => 'twi', 'unitig_0.g943' => 'ugi', 'unitig_0.g944' => 'ugi', 'unitig_22.g6646' => 'ugi', 'unitig_37.g12681' => 'ugi', 'unitig_8.g3290' => 'ugi', 'vmacro03278' => 'vma', 'vmacro12197' => 'vma', 'vmacro14478' => 'vma', 'vmacro15787' => 'vma', 'vmacro15789' => 'vma', 'vmacro15790' => 'vma', 'vmacro15806' => 'vma', 'vmacro22907' => 'vma', 'vmacro22908' => 'vma', 'vmacro22909' => 'vma', 'vmacro23108' => 'vma', 'VMungo0540G0540' => 'vmu', 'VMungo0540G2468' => 'vmu', 'VMungo1080G0390' => 'vmu', 'VMungo1080G1165' => 'vmu', 'VMungo1127G0170' => 'vmu', 'VMungo1127G2099' => 'vmu', 'VMungo1215G3013' => 'vmu', 'Zm00001eb013110' => 'zma', 'Zm00001eb084260' => 'zma', 'Zm00001eb096110' => 'zma', 'Zm00001eb217510' => 'zma', 'Zm00001eb322550' => 'zma', 'Zm00001eb390770' => 'zma', 'Zm00001eb397170' => 'zma', 'Zm00001eb404610' => 'zma', 'Zm00001eb421790' => 'zma' ) $gf_id = 'HOM05D000911' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000911' ) $data_identifier = 'HOM05D000911' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 16, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 5, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 6, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 8, 'nnu' => (int) 16, 'oeu' => (int) 8, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 5, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 16, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421790' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000911', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27780' => 'bna', 'A03p35380' => 'bna', 'A04p21160' => 'bna', 'A05p40570' => 'bna', 'A06p26900' => 'bna', 'A08p33230' => 'bna', 'A09p65960' => 'bna', 'A10p18290' => 'bna', 'Aa31LG1G12990' => 'aar', 'Aa31LG1G2980' => 'aar', 'Aa31LG4G14320' => 'aar', 'Aa31LG7G11800' => 'aar', 'Aa31sc36G50' => 'aar', 'Aa31sc36G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3721' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5459' => 'aag', 'Actinidia03028' => 'ach', 'Actinidia03753' => 'ach', 'Actinidia04187' => 'ach', 'Actinidia05509' => 'ach', 'Actinidia24180' => 'ach', 'Actinidia26906' => 'ach', 'Actinidia37097' => 'ach', 'Actinidia38249' => 'ach', 'Ah.01g003470' => 'amhyb', 'Ah.01g004580' => 'amhyb', 'Ah.01g014850' => 'amhyb', 'Ah.01g016830' => 'amhyb', 'Ah.14g088000' => 'amhyb', 'AL1G22980' => 'aly', 'AL3G18990' => 'aly', 'AL4G22440' => 'aly', 'AL4G33180' => 'aly', 'AL5G22920' => 'aly', 'AL6G33660' => 'aly', 'AL8G20720' => 'aly', 'Aqoxy1G00935' => 'aox', 'Aqoxy1G02094' => 'aox', 'Aqoxy2G01239' => 'aox', 'Aqoxy4G01870' => 'aox', 'Aqoxy7G00450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.36ZVTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71EM27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5D6C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH3WRE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3NCM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RIM768' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YB5YRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z36GDV' => 'arhy', 'AT1G08250' => 'ath', 'AT1G11790' => 'ath', 'AT2G27820' => 'ath', 'AT3G07630' => 'ath', 'AT3G44720' => 'ath', 'AT5G22630' => 'ath', 'ATR0693G304' => 'atr', 'ATR0794G109' => 'atr', 'ATR0820G120' => 'atr', 'ATR1159G064' => 'atr', 'Atru.chr10.2239' => 'acertr', 'Atru.chr3.3371' => 'acertr', 'Atru.chr6.3202' => 'acertr', 'AUR62006499' => 'cqu', 'AUR62012718' => 'cqu', 'AUR62021938' => 'cqu', 'AUR62023932' => 'cqu', 'AUR62025034' => 'cqu', 'AUR62025035' => 'cqu', 'AUR62038307' => 'cqu', 'AUR62043466' => 'cqu', 'BcaB02g10748' => 'bca', 'BcaB03g13231' => 'bca', 'BcaB03g14689' => 'bca', 'BcaB05g22716' => 'bca', 'BcaB06g28172' => 'bca', 'BcaB08g36413' => 'bca', 'BcaC01g02186' => 'bca', 'BcaC01g04272' => 'bca', 'BcaC02g08080' => 'bca', 'BcaC02g08227' => 'bca', 'BcaC03g13901' => 'bca', 'BcaC04g19593' => 'bca', 'BcaC04g20874' => 'bca', 'BcaC05g29557' => 'bca', 'BcaC06g35505' => 'bca', 'BcaC07g41954' => 'bca', 'BcaC07g41955' => 'bca', 'BcaC07g41956' => 'bca', 'BcaC07g42519' => 'bca', 'BcaC07g42520' => 'bca', 'BcaC07g42523' => 'bca', 'BcaC07g42524' => 'bca', 'BcaC07g42525' => 'bca', 'BcaC08g47480' => 'bca', 'BcaC08g47481' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00530' => 'bna', 'BolC2t07178H' => 'bol', 'BolC3t16567H' => 'bol', 'BolC4t27234H' => 'bol', 'BolC5t29728H' => 'bol', 'BolC5t34622H' => 'bol', 'BolC6t40321H' => 'bol', 'BolC7t42028H' => 'bol', 'BolC8t49125H' => 'bol', 'BolC8t52538H' => 'bol', 'BolC8t52539H' => 'bol', 'BolC9t56681H' => 'bol', 'BolC9t58266H' => 'bol', 'BolSC21t60294H' => 'bol', 'BraA02t05670Z' => 'bra', 'BraA03t12716Z' => 'bra', 'BraA04t17685Z' => 'bra', 'BraA05t22788Z' => 'bra', 'BraA06t24032Z' => 'bra', 'BraA06t25625Z' => 'bra', 'BraA07t27930Z' => 'bra', 'BraA08t35242Z' => 'bra', 'BraA09t38609Z' => 'bra', 'BraA10t43905Z' => 'bra', 'C02p11060' => 'bna', 'C03p42990' => 'bna', 'C03p67310' => 'bna', 'C04p56990' => 'bna', 'C04p58660' => 'bna', 'C05p09890' => 'bna', 'C05p59680' => 'bna', 'C06p19830' => 'bna', 'C06p53040' => 'bna', 'C07p15230' => 'bna', 'C08p50070' => 'bna', 'C08p50090' => 'bna', 'C09p38330' => 'bna', 'C09p53940' => 'bna', 'CAN.G1014.1' => 'can', 'CAN.G644.30' => 'can', 'CAN.G84.47' => 'can', 'CAN.G919.8' => 'can', 'CANSAT54G0113' => 'cansat', 'CANSAT54G1286' => 'cansat', 'CANSAT64G1020' => 'cansat', 'CARHR008080' => 'chi', 'CARHR008090' => 'chi', 'CARHR012130' => 'chi', 'CARHR038390' => 'chi', 'CARHR082330' => 'chi', 'CARHR120520' => 'chi', 'CARHR151470' => 'chi', 'CARHR190950' => 'chi', 'Carub.0001s0760' => 'cru', 'Carub.0001s1146' => 'cru', 'Carub.0003s0721' => 'cru', 'Carub.0004s0858' => 'cru', 'Carub.0005s1040' => 'cru', 'Carub.0006s2035' => 'cru', 'Carub.0015s0005' => 'cru', 'Ca_01607_v3' => 'car', 'Ca_01677_v3' => 'car', 'Ca_06087_v3' => 'car', 'Ca_19238_v3' => 'car', 'Ca_19373_v3' => 'car', 'Ca_21079_v3' => 'car', 'CBR_g54016' => 'cbr', 'CBR_g54018' => 'cbr', 'CBR_g54020' => 'cbr', 'Cc01_g09780' => 'ccan', 'Cc01_g11680' => 'ccan', 'Cc02_g15610' => 'ccan', 'Cc05_g04350' => 'ccan', 'Cc09_g01580' => 'ccan', 'CDE01G0795' => 'cde', 'CDE02G2024' => 'cde', 'CDE02G2260' => 'cde', 'CDE02G4561' => 'cde', 'CDE05G2733' => 'cde', 'CDE05G3422' => 'cde', 'CDE06G2003' => 'cde', 'CDE08G0576' => 'cde', 'CDE09G0048' => 'cde', 'CDE11G0805' => 'cde', 'Cfa003644' => 'cfa', 'Cfa006290' => 'cfa', 'Cfa010080' => 'cfa', 'Cfa011376' => 'cfa', 'Cfa011576' => 'cfa', 'Cfa011577' => 'cfa', 'Cfa014389' => 'cfa', 'Ciclev10006044m.g' => 'ccl', 'Ciclev10006954m.g' => 'ccl', 'Ciclev10015131m.g' => 'ccl', 'Ciclev10015580m.g' => 'ccl', 'Ciclev10028359m.g' => 'ccl', 'Ciclev10028573m.g' => 'ccl', 'CiPaw.03G159300' => 'cil', 'CiPaw.04G115100' => 'cil', 'CiPaw.09G092800' => 'cil', 'CiPaw.10G071800' => 'cil', 'CiPaw.13G105800' => 'cil', 'CiPaw.13G141000' => 'cil', 'CiPaw.14G103400' => 'cil', 'ClCG01G012700' => 'cla', 'ClCG01G012720' => 'cla', 'ClCG01G021920' => 'cla', 'ClCG02G008870' => 'cla', 'ClCG02G020840' => 'cla', 'ClCG02G021930' => 'cla', 'COL.COLO4_19302' => 'col', 'COL.COLO4_25262' => 'col', 'COL.COLO4_31788' => 'col', 'Cpa.g.c34684' => 'cpa', 'Cpa.g.c36520.1' => 'cpa', 'Cpa.g.c45626' => 'cpa', 'Cpa.g.sc121.17' => 'cpa', 'Cpa.g.sc13.22' => 'cpa', 'Cpa.g.sc87.88' => 'cpa', 'Cre06.g261800' => 'cre', 'CsaV3_1G014500' => 'csa', 'CsaV3_1G014510' => 'csa', 'CsaV3_2G034880' => 'csa', 'CsaV3_6G014760' => 'csa', 'CsaV3_6G021500' => 'csa', 'CsaV3_6G048980' => 'csa', 'CSS0002511' => 'camsi', 'CSS0007556' => 'camsi', 'CSS0008532' => 'camsi', 'CSS0009709' => 'camsi', 'CSS0010486' => 'camsi', 'CSS0016768' => 'camsi', 'CSS0023512' => 'camsi', 'CSS0025341' => 'camsi', 'CSS0027999' => 'camsi', 'CSS0028944' => 'camsi', 'CSS0032292' => 'camsi', 'CSS0032464' => 'camsi', 'CSS0037153' => 'camsi', 'CSS0039256' => 'camsi', 'CSS0048392' => 'camsi', 'CSS0050458' => 'camsi', 'DCAR_004224' => 'dca', 'DCAR_006147' => 'dca', 'DCAR_006465' => 'dca', 'DCAR_008159' => 'dca', 'DCAR_012164' => 'dca', 'DCAR_019764' => 'dca', 'Dinv05418' => 'din', 'Dinv10839' => 'din', 'Dinv12521' => 'din', 'Dinv13900' => 'din', 'Dinv29426' => 'din', 'Duzib150G0263' => 'dzi', 'Duzib168G1178' => 'dzi', 'Duzib168G1924' => 'dzi', 'Duzib170G0299' => 'dzi', 'Duzib170G0813' => 'dzi', 'Duzib235G1128' => 'dzi', 'Duzib248G1060' => 'dzi', 'ECA232G1910' => 'eca', 'ECA233G4621' => 'eca', 'ECA238G1216' => 'eca', 'ECA238G1784' => 'eca', 'ECA248G1242' => 'eca', 'EL10Ac8g20071' => 'bvu', 'EL10Ac9g21086' => 'bvu', 'EL10Ac9g22407' => 'bvu', 'EL10Ac9g22412' => 'bvu', 'Eucgr.A01119' => 'egr', 'Eucgr.E04043' => 'egr', 'Eucgr.J00428' => 'egr', 'Eucgr.J00958' => 'egr', 'FAN11G3091' => 'fan', 'FAN11G3651' => 'fan', 'FAN16G2566' => 'fan', 'FAN21G3155' => 'fan', 'FAN21G3400' => 'fan', 'FAN21G3543' => 'fan', 'FAN25G0234' => 'fan', 'FAN25G1422' => 'fan', 'FAN25G3392' => 'fan', 'FvH4_3g01940' => 'fve', 'FvH4_3g29870' => 'fve', 'FvH4_3g33680' => 'fve', 'Glyma.09G004200' => 'gma', 'Glyma.11G151288' => 'gma', 'Glyma.11G189100' => 'gma', 'Glyma.12G072500' => 'gma', 'Glyma.12G085500' => 'gma', 'Glyma.12G181800' => 'gma', 'Glyma.12G193000' => 'gma', 'Glyma.13G309300' => 'gma', 'Glyma.13G319000' => 'gma', 'Glyma.17G012600' => 'gma', 'Gohir.A06G148600' => 'ghi', 'Gohir.A07G115800' => 'ghi', 'Gohir.A08G003600' => 'ghi', 'Gohir.A09G093300' => 'ghi', 'Gohir.A09G105400' => 'ghi', 'Gohir.A09G105500' => 'ghi', 'Gohir.D06G154600' => 'ghi', 'Gohir.D07G120200' => 'ghi', 'Gohir.D08G013900' => 'ghi', 'Gohir.D09G093100' => 'ghi', 'Gohir.D09G102200' => 'ghi', 'Gohir.D09G102300' => 'ghi', 'Gorai.001G129400' => 'gra', 'Gorai.004G008200' => 'gra', 'Gorai.006G109800' => 'gra', 'Gorai.006G119500' => 'gra', 'Gorai.006G121300' => 'gra', 'Gorai.010G180700' => 'gra', 'GSVIVG01012716001' => 'vvi', 'GSVIVG01025118001' => 'vvi', 'GSVIVG01030439001' => 'vvi', 'GSVIVG01031397001' => 'vvi', 'HanXRQChr01g0004201' => 'han', 'HanXRQChr02g0054941' => 'han', 'HanXRQChr05g0141811' => 'han', 'HanXRQChr07g0197751' => 'han', 'HanXRQChr11g0346691' => 'han', 'HanXRQChr13g0396971' => 'han', 'HanXRQChr14g0432951' => 'han', 'HanXRQChr14g0452001' => 'han', 'HanXRQChr15g0496681' => 'han', 'HanXRQChr17g0557491' => 'han', 'HanXRQChr17g0557501' => 'han', 'Haze_06809' => 'cav', 'Haze_12852' => 'cav', 'Haze_15850' => 'cav', 'Haze_23446' => 'cav', 'Haze_23942' => 'cav', 'Haze_23943' => 'cav', 'Hma1.2p1_0091F.1_g046450' => 'hma', 'Hma1.2p1_0128F.1_g059910' => 'hma', 'Hma1.2p1_0249F.1_g102260' => 'hma', 'Hma1.2p1_0453F.1_g156190' => 'hma', 'Hma1.2p1_0695F.1_g204380' => 'hma', 'Hma1.2p1_0749F.1_g212650' => 'hma', 'Hma1.2p1_2156F.1_g315420' => 'hma', 'Hma1.2p1_2686F.1_g326940' => 'hma', 'HPP92_006428' => 'vpl', 'HPP92_012069' => 'vpl', 'HPP92_014129' => 'vpl', 'HPP92_014133' => 'vpl', 'HPP92_017315' => 'vpl', 'HPP92_026445' => 'vpl', 'HPP92_026446' => 'vpl', 'Hund00774' => 'sun', 'Hund07682' => 'sun', 'Hund21413' => 'sun', 'Hund23462' => 'sun', 'Hund23463' => 'sun', 'Lalb_Chr03g0027911' => 'lal', 'Lalb_Chr13g0304271' => 'lal', 'Lalb_Chr19g0137471' => 'lal', 'Lalb_Chr22g0350651' => 'lal', 'Lalb_Chr24g0395151' => 'lal', 'Lj1A1231T40' => 'lonja', 'Lj1A221T48' => 'lonja', 'Lj1C924T12' => 'lonja', 'Lj2C993G6' => 'lonja', 'Lj3g0005790' => 'lja', 'Lj3g0015432' => 'lja', 'Lj3g0017722' => 'lja', 'Lj3g0018497' => 'lja', 'Lj4g0025071' => 'lja', 'Lsat_1_v5_gn_1_129680' => 'lsa', 'Lsat_1_v5_gn_2_25321' => 'lsa', 'Lsat_1_v5_gn_2_95461' => 'lsa', 'Lsat_1_v5_gn_4_159620' => 'lsa', 'Lsat_1_v5_gn_6_41301' => 'lsa', 'Lsat_1_v5_gn_6_74660' => 'lsa', 'Lsat_1_v5_gn_7_11520' => 'lsa', 'Lsat_1_v5_gn_9_67680' => 'lsa', 'Manes.04G008300' => 'mes', 'Manes.04G008400' => 'mes', 'Manes.04G026500' => 'mes', 'Manes.10G135300' => 'mes', 'Manes.11G157300' => 'mes', 'Manes.12G074000' => 'mes', 'Manes.16G006200' => 'mes', 'Manes.17G026400' => 'mes', 'Mapoly0024s0086' => 'mpo', 'Mapoly0024s0087' => 'mpo', 'Mapoly0071s0057' => 'mpo', 'Mapoly0204s0012' => 'mpo', 'MBI04_g37681_MAGBIO' => 'mbi', 'MBI05_g17779_MAGBIO' => 'mbi', 'MBI12_g31184_MAGBIO' => 'mbi', 'MBI17_g11083_MAGBIO' => 'mbi', 'MBI18_g03883_MAGBIO' => 'mbi', 'MBI18_g28940_MAGBIO' => 'mbi', 'MCO01G690' => 'mco', 'MD03G1109900' => 'mdo', 'MD03G1134800' => 'mdo', 'MD05G1348000' => 'mdo', 'MD10G1322400' => 'mdo', 'MD11G1123300' => 'mdo', 'MD11G1157600' => 'mdo', 'Medtr2g084875' => 'mtr', 'Medtr2g088130' => 'mtr', 'Medtr4g055310' => 'mtr', 'Medtr4g061070' => 'mtr', 'Medtr4g132250' => 'mtr', 'MELO3C004795.2' => 'cme', 'MELO3C004797.2' => 'cme', 'MELO3C007396.2' => 'cme', 'MELO3C019277.2' => 'cme', 'MELO3C021449.2' => 'cme', 'MELO3C025736.2' => 'cme', 'Migut.D02175' => 'egut', 'Migut.H01573' => 'egut', 'Migut.M01327' => 'egut', 'Migut.N02513' => 'egut', 'MSTRG.14638' => 'ama', 'MSTRG.18632' => 'ama', 'MSTRG.7203' => 'ama', 'Nitab4.5_0000533g0140' => 'nta', 'Nitab4.5_0000888g0150' => 'nta', 'Nitab4.5_0001453g0040' => 'nta', 'Nitab4.5_0002827g0090' => 'nta', 'Nitab4.5_0003082g0040' => 'nta', 'Nitab4.5_0007799g0040' => 'nta', 'Nitab4.5_0008983g0010' => 'nta', 'Nitab4.5_0009017g0020' => 'nta', 'Nn1g02132' => 'nnu', 'Nn1g03492' => 'nnu', 'Nn1g03493' => 'nnu', 'Nn1g03494' => 'nnu', 'Nn1g07164' => 'nnu', 'Nn1g07291' => 'nnu', 'Nn2g10655' => 'nnu', 'Nn2g11652' => 'nnu', 'Nn2g14008' => 'nnu', 'Nn3g17476' => 'nnu', 'Nn3g17477' => 'nnu', 'Nn4g22370' => 'nnu', 'Nn4g25255' => 'nnu', 'Nn5g27755' => 'nnu', 'Nn6g34260' => 'nnu', 'Nn6g35041' => 'nnu', 'Oeu005924.1' => 'oeu', 'Oeu008383.1' => 'oeu', 'Oeu014928.1' => 'oeu', 'Oeu019889.1' => 'oeu', 'Oeu022271.1' => 'oeu', 'Oeu025271.1' => 'oeu', 'Oeu036302.1' => 'oeu', 'Oeu044100.1' => 'oeu', 'Os01g0528300' => 'osa', 'Os03g0286200' => 'osa', 'Os04g0406600' => 'osa', 'Os07g0512000' => 'osa', 'Os07g0694600' => 'osa', 'Os08g0411000' => 'osa', 'Os09g0565700' => 'osa', 'Os09g0566050' => 'osa', 'Os10g0523700' => 'osa', 'Peaxi162Scf00002g00514' => 'pax', 'Peaxi162Scf00047g01817' => 'pax', 'Peaxi162Scf00114g00001' => 'pax', 'Peaxi162Scf00147g00613' => 'pax', 'Peaxi162Scf00389g00425' => 'pax', 'PGR042G1139' => 'pgr', 'PGR042G3273' => 'pgr', 'PGR102G2180' => 'pgr', 'PGR119G0234' => 'pgr', 'PGR119G0668' => 'pgr', 'PGSC0003DMG400007122' => 'stu', 'PGSC0003DMG400016478' => 'stu', 'PGSC0003DMG400025374' => 'stu', 'PGSC0003DMG400026536' => 'stu', 'Phvul.003G079600' => 'pvu', 'Phvul.005G115600' => 'pvu', 'Phvul.005G127100' => 'pvu', 'Phvul.006G149500' => 'pvu', 'Phvul.006G149600' => 'pvu', 'Phvul.011G071800' => 'pvu', 'Phvul.011G090400' => 'pvu', 'Potri.004G013400' => 'ptr', 'Potri.004G188100' => 'ptr', 'Potri.008G195500' => 'ptr', 'Potri.009G148800' => 'ptr', 'Potri.011G004700' => 'ptr', 'Pp3c17_22810' => 'ppa', 'Pp3c18_4480' => 'ppa', 'Pp3c19_13030' => 'ppa', 'Pp3c1_33620' => 'ppa', 'Pp3c2_9380' => 'ppa', 'PRCOL_00001023' => 'pco', 'Prupe.3G216300' => 'ppe', 'Prupe.4G019500' => 'ppe', 'Prupe.6G092500' => 'ppe', 'Prupe.6G119200' => 'ppe', 'Psat0s1945g0080' => 'psa', 'Psat0s4167g0040' => 'psa', 'Psat1g185800' => 'psa', 'Psat4g006440' => 'psa', 'Psat4g006480' => 'psa', 'Psat4g168120' => 'psa', 'Psat5g255680' => 'psa', 'Psat5g261760' => 'psa', 'Psat7g222120' => 'psa', 'PSO063G7252' => 'pso', 'PSO170G4778' => 'pso', 'PSO210G2249' => 'pso', 'PSO339G2411' => 'pso', 'PSO339G2457' => 'pso', 'PSO339G2854' => 'pso', 'PSO339G4288' => 'pso', 'PSO339G4615' => 'pso', 'PSO384G2796' => 'pso', 'PSO384G2940' => 'pso', 'PSO384G4227' => 'pso', 'PSO478G1425' => 'pso', 'PSO541G3863' => 'pso', 'PSO675G0507' => 'pso', 'PSO782G0338' => 'pso', 'PSO832G0644' => 'pso', 'QL01p013664' => 'qlo', 'QL01p036598' => 'qlo', 'QL05p072984' => 'qlo', 'QL08p005768' => 'qlo', 'QL08p032743' => 'qlo', 'QL93p0073_0439' => 'qlo', 'QL93p0073_0444' => 'qlo', 'RcHm_v2.0_Chr5g0002851' => 'rch', 'RcHm_v2.0_Chr5g0055201' => 'rch', 'RcHm_v2.0_Chr5g0061191' => 'rch', 'RcHm_v2.0_Chr7g0203231' => 'rch', 'Rhsim01G0208100' => 'rsi', 'Rhsim01G0208200' => 'rsi', 'Rhsim02G0106500' => 'rsi', 'Rhsim03G0107900' => 'rsi', 'Rhsim06G0163400' => 'rsi', 'Rhsim13G0105200' => 'rsi', 'Sabra04G0006300' => 'sbr', 'Sabra04G0127000' => 'sbr', 'Sabra08G0148700' => 'sbr', 'Sabra09G0117400' => 'sbr', 'SalBow1G3326' => 'sbo', 'SalBow3G3228' => 'sbo', 'SalBow6G1634' => 'sbo', 'SalBow6G3603' => 'sbo', 'SalBow6G5266' => 'sbo', 'SalBow7G2265' => 'sbo', 'SalBow8G0850' => 'sbo', 'SalBow8G2592' => 'sbo', 'Sc05g0009240' => 'sci', 'Sc12g0002300' => 'sci', 'Sc21g0000100' => 'sci', 'Sc21g0004720' => 'sci', 'Sed0002949' => 'sed', 'Sed0004114' => 'sed', 'Sed0004306' => 'sed', 'Sed0006172' => 'sed', 'Sed0008413' => 'sed', 'Sed0013809' => 'sed', 'Sed0019556' => 'sed', 'SEGI_03570' => 'sgi', 'SEGI_07859' => 'sgi', 'SEGI_15042' => 'sgi', 'SEGI_16263' => 'sgi', 'SEGI_16552' => 'sgi', 'SEGI_24331' => 'sgi', 'SEGI_27316' => 'sgi', 'SEGI_29521' => 'sgi', 'SEGI_41342' => 'sgi', 'SGA_v2.0_scaffold27G11617' => 'sas', 'SGA_v2.0_scaffold316G48428' => 'sas', 'SGA_v2.0_scaffold49G18261' => 'sas', 'SGA_v2.0_scaffold7G03831' => 'sas', 'SGA_v2.0_scaffold93G28359' => 'sas', 'SHI02210' => 'shi', 'SHI06028' => 'shi', 'SHI06321' => 'shi', 'SMO111G0012' => 'smo', 'SMO228G0080' => 'smo', 'SMO356G0756' => 'smo', 'Solyc02g080620.3' => 'sly', 'Solyc06g074530.1' => 'sly', 'Solyc11g066890.1' => 'sly', 'Solyc11g072520.3' => 'sly', 'Sopen02g025330' => 'spe', 'Sopen06g031000' => 'spe', 'Sopen09g008240' => 'spe', 'Sopen09g025210' => 'spe', 'Sopen11g026600' => 'spe', 'Sopen11g030170' => 'spe', 'Sp1g10420' => 'spa', 'Sp3g06570' => 'spa', 'Sp4g10660' => 'spa', 'Sp5g16460' => 'spa', 'Sp6g22710' => 'spa', 'TAR365G0112' => 'tar', 'TAR369G0717' => 'tar', 'TAR374G0976' => 'tar', 'TAR623G1128' => 'tar', 'TAR626G1937' => 'tar', 'TAR627G0123' => 'tar', 'TAR628G0305' => 'tar', 'TAR636G1176' => 'tar', 'TAR636G2442' => 'tar', 'THA.LOC104800556' => 'tha', 'THA.LOC104809501' => 'tha', 'THA.LOC104815126' => 'tha', 'THA.LOC104815732' => 'tha', 'THA.LOC104823528' => 'tha', 'Thecc.02G365600' => 'tca', 'Thecc.06G222300' => 'tca', 'Thecc.09G261800' => 'tca', 'Thecc.09G291400' => 'tca', 'Thhalv10003028m.g' => 'esa', 'Thhalv10007886m.g' => 'esa', 'Thhalv10016085m.g' => 'esa', 'Thhalv10016681m.g' => 'esa', 'Thhalv10020951m.g' => 'esa', 'TPR.G15598' => 'tpr', 'TPR.G29305' => 'tpr', 'TPR.G32395' => 'tpr', 'TPR.G36998' => 'tpr', 'TPR.G4227' => 'tpr', 'TWI18G1433' => 'twi', 'TWI31G0755' => 'twi', 'TWI38G0912' => 'twi', 'TWI75G1097' => 'twi', 'TWI75G1619' => 'twi', 'TWI79G1336' => 'twi', 'unitig_0.g943' => 'ugi', 'unitig_0.g944' => 'ugi', 'unitig_22.g6646' => 'ugi', 'unitig_37.g12681' => 'ugi', 'unitig_8.g3290' => 'ugi', 'vmacro03278' => 'vma', 'vmacro12197' => 'vma', 'vmacro14478' => 'vma', 'vmacro15787' => 'vma', 'vmacro15789' => 'vma', 'vmacro15790' => 'vma', 'vmacro15806' => 'vma', 'vmacro22907' => 'vma', 'vmacro22908' => 'vma', 'vmacro22909' => 'vma', 'vmacro23108' => 'vma', 'VMungo0540G0540' => 'vmu', 'VMungo0540G2468' => 'vmu', 'VMungo1080G0390' => 'vmu', 'VMungo1080G1165' => 'vmu', 'VMungo1127G0170' => 'vmu', 'VMungo1127G2099' => 'vmu', 'VMungo1215G3013' => 'vmu', 'Zm00001eb013110' => 'zma', 'Zm00001eb084260' => 'zma', 'Zm00001eb096110' => 'zma', 'Zm00001eb217510' => 'zma', 'Zm00001eb322550' => 'zma', 'Zm00001eb390770' => 'zma', 'Zm00001eb397170' => 'zma', 'Zm00001eb404610' => 'zma', 'Zm00001eb421790' => 'zma' ), 'gf_id' => 'HOM05D000911', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000911' ), 'data_identifier' => 'HOM05D000911', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000911', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27780' => 'bna', 'A03p35380' => 'bna', 'A04p21160' => 'bna', 'A05p40570' => 'bna', 'A06p26900' => 'bna', 'A08p33230' => 'bna', 'A09p65960' => 'bna', 'A10p18290' => 'bna', 'Aa31LG1G12990' => 'aar', 'Aa31LG1G2980' => 'aar', 'Aa31LG4G14320' => 'aar', 'Aa31LG7G11800' => 'aar', 'Aa31sc36G50' => 'aar', 'Aa31sc36G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3721' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5459' => 'aag', 'Actinidia03028' => 'ach', 'Actinidia03753' => 'ach', 'Actinidia04187' => 'ach', 'Actinidia05509' => 'ach', 'Actinidia24180' => 'ach', 'Actinidia26906' => 'ach', 'Actinidia37097' => 'ach', 'Actinidia38249' => 'ach', 'Ah.01g003470' => 'amhyb', 'Ah.01g004580' => 'amhyb', 'Ah.01g014850' => 'amhyb', 'Ah.01g016830' => 'amhyb', 'Ah.14g088000' => 'amhyb', 'AL1G22980' => 'aly', 'AL3G18990' => 'aly', 'AL4G22440' => 'aly', 'AL4G33180' => 'aly', 'AL5G22920' => 'aly', 'AL6G33660' => 'aly', 'AL8G20720' => 'aly', 'Aqoxy1G00935' => 'aox', 'Aqoxy1G02094' => 'aox', 'Aqoxy2G01239' => 'aox', 'Aqoxy4G01870' => 'aox', 'Aqoxy7G00450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.36ZVTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71EM27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5D6C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH3WRE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3NCM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RIM768' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YB5YRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z36GDV' => 'arhy', 'AT1G08250' => 'ath', 'AT1G11790' => 'ath', 'AT2G27820' => 'ath', 'AT3G07630' => 'ath', 'AT3G44720' => 'ath', 'AT5G22630' => 'ath', 'ATR0693G304' => 'atr', 'ATR0794G109' => 'atr', 'ATR0820G120' => 'atr', 'ATR1159G064' => 'atr', 'Atru.chr10.2239' => 'acertr', 'Atru.chr3.3371' => 'acertr', 'Atru.chr6.3202' => 'acertr', 'AUR62006499' => 'cqu', 'AUR62012718' => 'cqu', 'AUR62021938' => 'cqu', 'AUR62023932' => 'cqu', 'AUR62025034' => 'cqu', 'AUR62025035' => 'cqu', 'AUR62038307' => 'cqu', 'AUR62043466' => 'cqu', 'BcaB02g10748' => 'bca', 'BcaB03g13231' => 'bca', 'BcaB03g14689' => 'bca', 'BcaB05g22716' => 'bca', 'BcaB06g28172' => 'bca', 'BcaB08g36413' => 'bca', 'BcaC01g02186' => 'bca', 'BcaC01g04272' => 'bca', 'BcaC02g08080' => 'bca', 'BcaC02g08227' => 'bca', 'BcaC03g13901' => 'bca', 'BcaC04g19593' => 'bca', 'BcaC04g20874' => 'bca', 'BcaC05g29557' => 'bca', 'BcaC06g35505' => 'bca', 'BcaC07g41954' => 'bca', 'BcaC07g41955' => 'bca', 'BcaC07g41956' => 'bca', 'BcaC07g42519' => 'bca', 'BcaC07g42520' => 'bca', 'BcaC07g42523' => 'bca', 'BcaC07g42524' => 'bca', 'BcaC07g42525' => 'bca', 'BcaC08g47480' => 'bca', 'BcaC08g47481' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00530' => 'bna', 'BolC2t07178H' => 'bol', 'BolC3t16567H' => 'bol', 'BolC4t27234H' => 'bol', 'BolC5t29728H' => 'bol', 'BolC5t34622H' => 'bol', 'BolC6t40321H' => 'bol', 'BolC7t42028H' => 'bol', 'BolC8t49125H' => 'bol', 'BolC8t52538H' => 'bol', 'BolC8t52539H' => 'bol', 'BolC9t56681H' => 'bol', 'BolC9t58266H' => 'bol', 'BolSC21t60294H' => 'bol', 'BraA02t05670Z' => 'bra', 'BraA03t12716Z' => 'bra', 'BraA04t17685Z' => 'bra', 'BraA05t22788Z' => 'bra', 'BraA06t24032Z' => 'bra', 'BraA06t25625Z' => 'bra', 'BraA07t27930Z' => 'bra', 'BraA08t35242Z' => 'bra', 'BraA09t38609Z' => 'bra', 'BraA10t43905Z' => 'bra', 'C02p11060' => 'bna', 'C03p42990' => 'bna', 'C03p67310' => 'bna', 'C04p56990' => 'bna', 'C04p58660' => 'bna', 'C05p09890' => 'bna', 'C05p59680' => 'bna', 'C06p19830' => 'bna', 'C06p53040' => 'bna', 'C07p15230' => 'bna', 'C08p50070' => 'bna', 'C08p50090' => 'bna', 'C09p38330' => 'bna', 'C09p53940' => 'bna', 'CAN.G1014.1' => 'can', 'CAN.G644.30' => 'can', 'CAN.G84.47' => 'can', 'CAN.G919.8' => 'can', 'CANSAT54G0113' => 'cansat', 'CANSAT54G1286' => 'cansat', 'CANSAT64G1020' => 'cansat', 'CARHR008080' => 'chi', 'CARHR008090' => 'chi', 'CARHR012130' => 'chi', 'CARHR038390' => 'chi', 'CARHR082330' => 'chi', 'CARHR120520' => 'chi', 'CARHR151470' => 'chi', 'CARHR190950' => 'chi', 'Carub.0001s0760' => 'cru', 'Carub.0001s1146' => 'cru', 'Carub.0003s0721' => 'cru', 'Carub.0004s0858' => 'cru', 'Carub.0005s1040' => 'cru', 'Carub.0006s2035' => 'cru', 'Carub.0015s0005' => 'cru', 'Ca_01607_v3' => 'car', 'Ca_01677_v3' => 'car', 'Ca_06087_v3' => 'car', 'Ca_19238_v3' => 'car', 'Ca_19373_v3' => 'car', 'Ca_21079_v3' => 'car', 'CBR_g54016' => 'cbr', 'CBR_g54018' => 'cbr', 'CBR_g54020' => 'cbr', 'Cc01_g09780' => 'ccan', 'Cc01_g11680' => 'ccan', 'Cc02_g15610' => 'ccan', 'Cc05_g04350' => 'ccan', 'Cc09_g01580' => 'ccan', 'CDE01G0795' => 'cde', 'CDE02G2024' => 'cde', 'CDE02G2260' => 'cde', 'CDE02G4561' => 'cde', 'CDE05G2733' => 'cde', 'CDE05G3422' => 'cde', 'CDE06G2003' => 'cde', 'CDE08G0576' => 'cde', 'CDE09G0048' => 'cde', 'CDE11G0805' => 'cde', 'Cfa003644' => 'cfa', 'Cfa006290' => 'cfa', 'Cfa010080' => 'cfa', 'Cfa011376' => 'cfa', 'Cfa011576' => 'cfa', 'Cfa011577' => 'cfa', 'Cfa014389' => 'cfa', 'Ciclev10006044m.g' => 'ccl', 'Ciclev10006954m.g' => 'ccl', 'Ciclev10015131m.g' => 'ccl', 'Ciclev10015580m.g' => 'ccl', 'Ciclev10028359m.g' => 'ccl', 'Ciclev10028573m.g' => 'ccl', 'CiPaw.03G159300' => 'cil', 'CiPaw.04G115100' => 'cil', 'CiPaw.09G092800' => 'cil', 'CiPaw.10G071800' => 'cil', 'CiPaw.13G105800' => 'cil', 'CiPaw.13G141000' => 'cil', 'CiPaw.14G103400' => 'cil', 'ClCG01G012700' => 'cla', 'ClCG01G012720' => 'cla', 'ClCG01G021920' => 'cla', 'ClCG02G008870' => 'cla', 'ClCG02G020840' => 'cla', 'ClCG02G021930' => 'cla', 'COL.COLO4_19302' => 'col', 'COL.COLO4_25262' => 'col', 'COL.COLO4_31788' => 'col', 'Cpa.g.c34684' => 'cpa', 'Cpa.g.c36520.1' => 'cpa', 'Cpa.g.c45626' => 'cpa', 'Cpa.g.sc121.17' => 'cpa', 'Cpa.g.sc13.22' => 'cpa', 'Cpa.g.sc87.88' => 'cpa', 'Cre06.g261800' => 'cre', 'CsaV3_1G014500' => 'csa', 'CsaV3_1G014510' => 'csa', 'CsaV3_2G034880' => 'csa', 'CsaV3_6G014760' => 'csa', 'CsaV3_6G021500' => 'csa', 'CsaV3_6G048980' => 'csa', 'CSS0002511' => 'camsi', 'CSS0007556' => 'camsi', 'CSS0008532' => 'camsi', 'CSS0009709' => 'camsi', 'CSS0010486' => 'camsi', 'CSS0016768' => 'camsi', 'CSS0023512' => 'camsi', 'CSS0025341' => 'camsi', 'CSS0027999' => 'camsi', 'CSS0028944' => 'camsi', 'CSS0032292' => 'camsi', 'CSS0032464' => 'camsi', 'CSS0037153' => 'camsi', 'CSS0039256' => 'camsi', 'CSS0048392' => 'camsi', 'CSS0050458' => 'camsi', 'DCAR_004224' => 'dca', 'DCAR_006147' => 'dca', 'DCAR_006465' => 'dca', 'DCAR_008159' => 'dca', 'DCAR_012164' => 'dca', 'DCAR_019764' => 'dca', 'Dinv05418' => 'din', 'Dinv10839' => 'din', 'Dinv12521' => 'din', 'Dinv13900' => 'din', 'Dinv29426' => 'din', 'Duzib150G0263' => 'dzi', 'Duzib168G1178' => 'dzi', 'Duzib168G1924' => 'dzi', 'Duzib170G0299' => 'dzi', 'Duzib170G0813' => 'dzi', 'Duzib235G1128' => 'dzi', 'Duzib248G1060' => 'dzi', 'ECA232G1910' => 'eca', 'ECA233G4621' => 'eca', 'ECA238G1216' => 'eca', 'ECA238G1784' => 'eca', 'ECA248G1242' => 'eca', 'EL10Ac8g20071' => 'bvu', 'EL10Ac9g21086' => 'bvu', 'EL10Ac9g22407' => 'bvu', 'EL10Ac9g22412' => 'bvu', 'Eucgr.A01119' => 'egr', 'Eucgr.E04043' => 'egr', 'Eucgr.J00428' => 'egr', 'Eucgr.J00958' => 'egr', 'FAN11G3091' => 'fan', 'FAN11G3651' => 'fan', 'FAN16G2566' => 'fan', 'FAN21G3155' => 'fan', 'FAN21G3400' => 'fan', 'FAN21G3543' => 'fan', 'FAN25G0234' => 'fan', 'FAN25G1422' => 'fan', 'FAN25G3392' => 'fan', 'FvH4_3g01940' => 'fve', 'FvH4_3g29870' => 'fve', 'FvH4_3g33680' => 'fve', 'Glyma.09G004200' => 'gma', 'Glyma.11G151288' => 'gma', 'Glyma.11G189100' => 'gma', 'Glyma.12G072500' => 'gma', 'Glyma.12G085500' => 'gma', 'Glyma.12G181800' => 'gma', 'Glyma.12G193000' => 'gma', 'Glyma.13G309300' => 'gma', 'Glyma.13G319000' => 'gma', 'Glyma.17G012600' => 'gma', 'Gohir.A06G148600' => 'ghi', 'Gohir.A07G115800' => 'ghi', 'Gohir.A08G003600' => 'ghi', 'Gohir.A09G093300' => 'ghi', 'Gohir.A09G105400' => 'ghi', 'Gohir.A09G105500' => 'ghi', 'Gohir.D06G154600' => 'ghi', 'Gohir.D07G120200' => 'ghi', 'Gohir.D08G013900' => 'ghi', 'Gohir.D09G093100' => 'ghi', 'Gohir.D09G102200' => 'ghi', 'Gohir.D09G102300' => 'ghi', 'Gorai.001G129400' => 'gra', 'Gorai.004G008200' => 'gra', 'Gorai.006G109800' => 'gra', 'Gorai.006G119500' => 'gra', 'Gorai.006G121300' => 'gra', 'Gorai.010G180700' => 'gra', 'GSVIVG01012716001' => 'vvi', 'GSVIVG01025118001' => 'vvi', 'GSVIVG01030439001' => 'vvi', 'GSVIVG01031397001' => 'vvi', 'HanXRQChr01g0004201' => 'han', 'HanXRQChr02g0054941' => 'han', 'HanXRQChr05g0141811' => 'han', 'HanXRQChr07g0197751' => 'han', 'HanXRQChr11g0346691' => 'han', 'HanXRQChr13g0396971' => 'han', 'HanXRQChr14g0432951' => 'han', 'HanXRQChr14g0452001' => 'han', 'HanXRQChr15g0496681' => 'han', 'HanXRQChr17g0557491' => 'han', 'HanXRQChr17g0557501' => 'han', 'Haze_06809' => 'cav', 'Haze_12852' => 'cav', 'Haze_15850' => 'cav', 'Haze_23446' => 'cav', 'Haze_23942' => 'cav', 'Haze_23943' => 'cav', 'Hma1.2p1_0091F.1_g046450' => 'hma', 'Hma1.2p1_0128F.1_g059910' => 'hma', 'Hma1.2p1_0249F.1_g102260' => 'hma', 'Hma1.2p1_0453F.1_g156190' => 'hma', 'Hma1.2p1_0695F.1_g204380' => 'hma', 'Hma1.2p1_0749F.1_g212650' => 'hma', 'Hma1.2p1_2156F.1_g315420' => 'hma', 'Hma1.2p1_2686F.1_g326940' => 'hma', 'HPP92_006428' => 'vpl', 'HPP92_012069' => 'vpl', 'HPP92_014129' => 'vpl', 'HPP92_014133' => 'vpl', 'HPP92_017315' => 'vpl', 'HPP92_026445' => 'vpl', 'HPP92_026446' => 'vpl', 'Hund00774' => 'sun', 'Hund07682' => 'sun', 'Hund21413' => 'sun', 'Hund23462' => 'sun', 'Hund23463' => 'sun', 'Lalb_Chr03g0027911' => 'lal', 'Lalb_Chr13g0304271' => 'lal', 'Lalb_Chr19g0137471' => 'lal', 'Lalb_Chr22g0350651' => 'lal', 'Lalb_Chr24g0395151' => 'lal', 'Lj1A1231T40' => 'lonja', 'Lj1A221T48' => 'lonja', 'Lj1C924T12' => 'lonja', 'Lj2C993G6' => 'lonja', 'Lj3g0005790' => 'lja', 'Lj3g0015432' => 'lja', 'Lj3g0017722' => 'lja', 'Lj3g0018497' => 'lja', 'Lj4g0025071' => 'lja', 'Lsat_1_v5_gn_1_129680' => 'lsa', 'Lsat_1_v5_gn_2_25321' => 'lsa', 'Lsat_1_v5_gn_2_95461' => 'lsa', 'Lsat_1_v5_gn_4_159620' => 'lsa', 'Lsat_1_v5_gn_6_41301' => 'lsa', 'Lsat_1_v5_gn_6_74660' => 'lsa', 'Lsat_1_v5_gn_7_11520' => 'lsa', 'Lsat_1_v5_gn_9_67680' => 'lsa', 'Manes.04G008300' => 'mes', 'Manes.04G008400' => 'mes', 'Manes.04G026500' => 'mes', 'Manes.10G135300' => 'mes', 'Manes.11G157300' => 'mes', 'Manes.12G074000' => 'mes', 'Manes.16G006200' => 'mes', 'Manes.17G026400' => 'mes', 'Mapoly0024s0086' => 'mpo', 'Mapoly0024s0087' => 'mpo', 'Mapoly0071s0057' => 'mpo', 'Mapoly0204s0012' => 'mpo', 'MBI04_g37681_MAGBIO' => 'mbi', 'MBI05_g17779_MAGBIO' => 'mbi', 'MBI12_g31184_MAGBIO' => 'mbi', 'MBI17_g11083_MAGBIO' => 'mbi', 'MBI18_g03883_MAGBIO' => 'mbi', 'MBI18_g28940_MAGBIO' => 'mbi', 'MCO01G690' => 'mco', 'MD03G1109900' => 'mdo', 'MD03G1134800' => 'mdo', 'MD05G1348000' => 'mdo', 'MD10G1322400' => 'mdo', 'MD11G1123300' => 'mdo', 'MD11G1157600' => 'mdo', 'Medtr2g084875' => 'mtr', 'Medtr2g088130' => 'mtr', 'Medtr4g055310' => 'mtr', 'Medtr4g061070' => 'mtr', 'Medtr4g132250' => 'mtr', 'MELO3C004795.2' => 'cme', 'MELO3C004797.2' => 'cme', 'MELO3C007396.2' => 'cme', 'MELO3C019277.2' => 'cme', 'MELO3C021449.2' => 'cme', 'MELO3C025736.2' => 'cme', 'Migut.D02175' => 'egut', 'Migut.H01573' => 'egut', 'Migut.M01327' => 'egut', 'Migut.N02513' => 'egut', 'MSTRG.14638' => 'ama', 'MSTRG.18632' => 'ama', 'MSTRG.7203' => 'ama', 'Nitab4.5_0000533g0140' => 'nta', 'Nitab4.5_0000888g0150' => 'nta', 'Nitab4.5_0001453g0040' => 'nta', 'Nitab4.5_0002827g0090' => 'nta', 'Nitab4.5_0003082g0040' => 'nta', 'Nitab4.5_0007799g0040' => 'nta', 'Nitab4.5_0008983g0010' => 'nta', 'Nitab4.5_0009017g0020' => 'nta', 'Nn1g02132' => 'nnu', 'Nn1g03492' => 'nnu', 'Nn1g03493' => 'nnu', 'Nn1g03494' => 'nnu', 'Nn1g07164' => 'nnu', 'Nn1g07291' => 'nnu', 'Nn2g10655' => 'nnu', 'Nn2g11652' => 'nnu', 'Nn2g14008' => 'nnu', 'Nn3g17476' => 'nnu', 'Nn3g17477' => 'nnu', 'Nn4g22370' => 'nnu', 'Nn4g25255' => 'nnu', 'Nn5g27755' => 'nnu', 'Nn6g34260' => 'nnu', 'Nn6g35041' => 'nnu', 'Oeu005924.1' => 'oeu', 'Oeu008383.1' => 'oeu', 'Oeu014928.1' => 'oeu', 'Oeu019889.1' => 'oeu', 'Oeu022271.1' => 'oeu', 'Oeu025271.1' => 'oeu', 'Oeu036302.1' => 'oeu', 'Oeu044100.1' => 'oeu', 'Os01g0528300' => 'osa', 'Os03g0286200' => 'osa', 'Os04g0406600' => 'osa', 'Os07g0512000' => 'osa', 'Os07g0694600' => 'osa', 'Os08g0411000' => 'osa', 'Os09g0565700' => 'osa', 'Os09g0566050' => 'osa', 'Os10g0523700' => 'osa', 'Peaxi162Scf00002g00514' => 'pax', 'Peaxi162Scf00047g01817' => 'pax', 'Peaxi162Scf00114g00001' => 'pax', 'Peaxi162Scf00147g00613' => 'pax', 'Peaxi162Scf00389g00425' => 'pax', 'PGR042G1139' => 'pgr', 'PGR042G3273' => 'pgr', 'PGR102G2180' => 'pgr', 'PGR119G0234' => 'pgr', 'PGR119G0668' => 'pgr', 'PGSC0003DMG400007122' => 'stu', 'PGSC0003DMG400016478' => 'stu', 'PGSC0003DMG400025374' => 'stu', 'PGSC0003DMG400026536' => 'stu', 'Phvul.003G079600' => 'pvu', 'Phvul.005G115600' => 'pvu', 'Phvul.005G127100' => 'pvu', 'Phvul.006G149500' => 'pvu', 'Phvul.006G149600' => 'pvu', 'Phvul.011G071800' => 'pvu', 'Phvul.011G090400' => 'pvu', 'Potri.004G013400' => 'ptr', 'Potri.004G188100' => 'ptr', 'Potri.008G195500' => 'ptr', 'Potri.009G148800' => 'ptr', 'Potri.011G004700' => 'ptr', 'Pp3c17_22810' => 'ppa', 'Pp3c18_4480' => 'ppa', 'Pp3c19_13030' => 'ppa', 'Pp3c1_33620' => 'ppa', 'Pp3c2_9380' => 'ppa', 'PRCOL_00001023' => 'pco', 'Prupe.3G216300' => 'ppe', 'Prupe.4G019500' => 'ppe', 'Prupe.6G092500' => 'ppe', 'Prupe.6G119200' => 'ppe', 'Psat0s1945g0080' => 'psa', 'Psat0s4167g0040' => 'psa', 'Psat1g185800' => 'psa', 'Psat4g006440' => 'psa', 'Psat4g006480' => 'psa', 'Psat4g168120' => 'psa', 'Psat5g255680' => 'psa', 'Psat5g261760' => 'psa', 'Psat7g222120' => 'psa', 'PSO063G7252' => 'pso', 'PSO170G4778' => 'pso', 'PSO210G2249' => 'pso', 'PSO339G2411' => 'pso', 'PSO339G2457' => 'pso', 'PSO339G2854' => 'pso', 'PSO339G4288' => 'pso', 'PSO339G4615' => 'pso', 'PSO384G2796' => 'pso', 'PSO384G2940' => 'pso', 'PSO384G4227' => 'pso', 'PSO478G1425' => 'pso', 'PSO541G3863' => 'pso', 'PSO675G0507' => 'pso', 'PSO782G0338' => 'pso', 'PSO832G0644' => 'pso', 'QL01p013664' => 'qlo', 'QL01p036598' => 'qlo', 'QL05p072984' => 'qlo', 'QL08p005768' => 'qlo', 'QL08p032743' => 'qlo', 'QL93p0073_0439' => 'qlo', 'QL93p0073_0444' => 'qlo', 'RcHm_v2.0_Chr5g0002851' => 'rch', 'RcHm_v2.0_Chr5g0055201' => 'rch', 'RcHm_v2.0_Chr5g0061191' => 'rch', 'RcHm_v2.0_Chr7g0203231' => 'rch', 'Rhsim01G0208100' => 'rsi', 'Rhsim01G0208200' => 'rsi', 'Rhsim02G0106500' => 'rsi', 'Rhsim03G0107900' => 'rsi', 'Rhsim06G0163400' => 'rsi', 'Rhsim13G0105200' => 'rsi', 'Sabra04G0006300' => 'sbr', 'Sabra04G0127000' => 'sbr', 'Sabra08G0148700' => 'sbr', 'Sabra09G0117400' => 'sbr', 'SalBow1G3326' => 'sbo', 'SalBow3G3228' => 'sbo', 'SalBow6G1634' => 'sbo', 'SalBow6G3603' => 'sbo', 'SalBow6G5266' => 'sbo', 'SalBow7G2265' => 'sbo', 'SalBow8G0850' => 'sbo', 'SalBow8G2592' => 'sbo', 'Sc05g0009240' => 'sci', 'Sc12g0002300' => 'sci', 'Sc21g0000100' => 'sci', 'Sc21g0004720' => 'sci', 'Sed0002949' => 'sed', 'Sed0004114' => 'sed', 'Sed0004306' => 'sed', 'Sed0006172' => 'sed', 'Sed0008413' => 'sed', 'Sed0013809' => 'sed', 'Sed0019556' => 'sed', 'SEGI_03570' => 'sgi', 'SEGI_07859' => 'sgi', 'SEGI_15042' => 'sgi', 'SEGI_16263' => 'sgi', 'SEGI_16552' => 'sgi', 'SEGI_24331' => 'sgi', 'SEGI_27316' => 'sgi', 'SEGI_29521' => 'sgi', 'SEGI_41342' => 'sgi', 'SGA_v2.0_scaffold27G11617' => 'sas', 'SGA_v2.0_scaffold316G48428' => 'sas', 'SGA_v2.0_scaffold49G18261' => 'sas', 'SGA_v2.0_scaffold7G03831' => 'sas', 'SGA_v2.0_scaffold93G28359' => 'sas', 'SHI02210' => 'shi', 'SHI06028' => 'shi', 'SHI06321' => 'shi', 'SMO111G0012' => 'smo', 'SMO228G0080' => 'smo', 'SMO356G0756' => 'smo', 'Solyc02g080620.3' => 'sly', 'Solyc06g074530.1' => 'sly', 'Solyc11g066890.1' => 'sly', 'Solyc11g072520.3' => 'sly', 'Sopen02g025330' => 'spe', 'Sopen06g031000' => 'spe', 'Sopen09g008240' => 'spe', 'Sopen09g025210' => 'spe', 'Sopen11g026600' => 'spe', 'Sopen11g030170' => 'spe', 'Sp1g10420' => 'spa', 'Sp3g06570' => 'spa', 'Sp4g10660' => 'spa', 'Sp5g16460' => 'spa', 'Sp6g22710' => 'spa', 'TAR365G0112' => 'tar', 'TAR369G0717' => 'tar', 'TAR374G0976' => 'tar', 'TAR623G1128' => 'tar', 'TAR626G1937' => 'tar', 'TAR627G0123' => 'tar', 'TAR628G0305' => 'tar', 'TAR636G1176' => 'tar', 'TAR636G2442' => 'tar', 'THA.LOC104800556' => 'tha', 'THA.LOC104809501' => 'tha', 'THA.LOC104815126' => 'tha', 'THA.LOC104815732' => 'tha', 'THA.LOC104823528' => 'tha', 'Thecc.02G365600' => 'tca', 'Thecc.06G222300' => 'tca', 'Thecc.09G261800' => 'tca', 'Thecc.09G291400' => 'tca', 'Thhalv10003028m.g' => 'esa', 'Thhalv10007886m.g' => 'esa', 'Thhalv10016085m.g' => 'esa', 'Thhalv10016681m.g' => 'esa', 'Thhalv10020951m.g' => 'esa', 'TPR.G15598' => 'tpr', 'TPR.G29305' => 'tpr', 'TPR.G32395' => 'tpr', 'TPR.G36998' => 'tpr', 'TPR.G4227' => 'tpr', 'TWI18G1433' => 'twi', 'TWI31G0755' => 'twi', 'TWI38G0912' => 'twi', 'TWI75G1097' => 'twi', 'TWI75G1619' => 'twi', 'TWI79G1336' => 'twi', 'unitig_0.g943' => 'ugi', 'unitig_0.g944' => 'ugi', 'unitig_22.g6646' => 'ugi', 'unitig_37.g12681' => 'ugi', 'unitig_8.g3290' => 'ugi', 'vmacro03278' => 'vma', 'vmacro12197' => 'vma', 'vmacro14478' => 'vma', 'vmacro15787' => 'vma', 'vmacro15789' => 'vma', 'vmacro15790' => 'vma', 'vmacro15806' => 'vma', 'vmacro22907' => 'vma', 'vmacro22908' => 'vma', 'vmacro22909' => 'vma', 'vmacro23108' => 'vma', 'VMungo0540G0540' => 'vmu', 'VMungo0540G2468' => 'vmu', 'VMungo1080G0390' => 'vmu', 'VMungo1080G1165' => 'vmu', 'VMungo1127G0170' => 'vmu', 'VMungo1127G2099' => 'vmu', 'VMungo1215G3013' => 'vmu', 'Zm00001eb013110' => 'zma', 'Zm00001eb084260' => 'zma', 'Zm00001eb096110' => 'zma', 'Zm00001eb217510' => 'zma', 'Zm00001eb322550' => 'zma', 'Zm00001eb390770' => 'zma', 'Zm00001eb397170' => 'zma', 'Zm00001eb404610' => 'zma', 'Zm00001eb421790' => 'zma' ) $gf_id = 'HOM05D000911' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000911' ) $data_identifier = 'HOM05D000911' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 16, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 5, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 6, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 8, 'nnu' => (int) 16, 'oeu' => (int) 8, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 5, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 16, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421790' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000911', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27780' => 'bna', 'A03p35380' => 'bna', 'A04p21160' => 'bna', 'A05p40570' => 'bna', 'A06p26900' => 'bna', 'A08p33230' => 'bna', 'A09p65960' => 'bna', 'A10p18290' => 'bna', 'Aa31LG1G12990' => 'aar', 'Aa31LG1G2980' => 'aar', 'Aa31LG4G14320' => 'aar', 'Aa31LG7G11800' => 'aar', 'Aa31sc36G50' => 'aar', 'Aa31sc36G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3721' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5459' => 'aag', 'Actinidia03028' => 'ach', 'Actinidia03753' => 'ach', 'Actinidia04187' => 'ach', 'Actinidia05509' => 'ach', 'Actinidia24180' => 'ach', 'Actinidia26906' => 'ach', 'Actinidia37097' => 'ach', 'Actinidia38249' => 'ach', 'Ah.01g003470' => 'amhyb', 'Ah.01g004580' => 'amhyb', 'Ah.01g014850' => 'amhyb', 'Ah.01g016830' => 'amhyb', 'Ah.14g088000' => 'amhyb', 'AL1G22980' => 'aly', 'AL3G18990' => 'aly', 'AL4G22440' => 'aly', 'AL4G33180' => 'aly', 'AL5G22920' => 'aly', 'AL6G33660' => 'aly', 'AL8G20720' => 'aly', 'Aqoxy1G00935' => 'aox', 'Aqoxy1G02094' => 'aox', 'Aqoxy2G01239' => 'aox', 'Aqoxy4G01870' => 'aox', 'Aqoxy7G00450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.36ZVTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71EM27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5D6C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH3WRE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3NCM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RIM768' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YB5YRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z36GDV' => 'arhy', 'AT1G08250' => 'ath', 'AT1G11790' => 'ath', 'AT2G27820' => 'ath', 'AT3G07630' => 'ath', 'AT3G44720' => 'ath', 'AT5G22630' => 'ath', 'ATR0693G304' => 'atr', 'ATR0794G109' => 'atr', 'ATR0820G120' => 'atr', 'ATR1159G064' => 'atr', 'Atru.chr10.2239' => 'acertr', 'Atru.chr3.3371' => 'acertr', 'Atru.chr6.3202' => 'acertr', 'AUR62006499' => 'cqu', 'AUR62012718' => 'cqu', 'AUR62021938' => 'cqu', 'AUR62023932' => 'cqu', 'AUR62025034' => 'cqu', 'AUR62025035' => 'cqu', 'AUR62038307' => 'cqu', 'AUR62043466' => 'cqu', 'BcaB02g10748' => 'bca', 'BcaB03g13231' => 'bca', 'BcaB03g14689' => 'bca', 'BcaB05g22716' => 'bca', 'BcaB06g28172' => 'bca', 'BcaB08g36413' => 'bca', 'BcaC01g02186' => 'bca', 'BcaC01g04272' => 'bca', 'BcaC02g08080' => 'bca', 'BcaC02g08227' => 'bca', 'BcaC03g13901' => 'bca', 'BcaC04g19593' => 'bca', 'BcaC04g20874' => 'bca', 'BcaC05g29557' => 'bca', 'BcaC06g35505' => 'bca', 'BcaC07g41954' => 'bca', 'BcaC07g41955' => 'bca', 'BcaC07g41956' => 'bca', 'BcaC07g42519' => 'bca', 'BcaC07g42520' => 'bca', 'BcaC07g42523' => 'bca', 'BcaC07g42524' => 'bca', 'BcaC07g42525' => 'bca', 'BcaC08g47480' => 'bca', 'BcaC08g47481' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00530' => 'bna', 'BolC2t07178H' => 'bol', 'BolC3t16567H' => 'bol', 'BolC4t27234H' => 'bol', 'BolC5t29728H' => 'bol', 'BolC5t34622H' => 'bol', 'BolC6t40321H' => 'bol', 'BolC7t42028H' => 'bol', 'BolC8t49125H' => 'bol', 'BolC8t52538H' => 'bol', 'BolC8t52539H' => 'bol', 'BolC9t56681H' => 'bol', 'BolC9t58266H' => 'bol', 'BolSC21t60294H' => 'bol', 'BraA02t05670Z' => 'bra', 'BraA03t12716Z' => 'bra', 'BraA04t17685Z' => 'bra', 'BraA05t22788Z' => 'bra', 'BraA06t24032Z' => 'bra', 'BraA06t25625Z' => 'bra', 'BraA07t27930Z' => 'bra', 'BraA08t35242Z' => 'bra', 'BraA09t38609Z' => 'bra', 'BraA10t43905Z' => 'bra', 'C02p11060' => 'bna', 'C03p42990' => 'bna', 'C03p67310' => 'bna', 'C04p56990' => 'bna', 'C04p58660' => 'bna', 'C05p09890' => 'bna', 'C05p59680' => 'bna', 'C06p19830' => 'bna', 'C06p53040' => 'bna', 'C07p15230' => 'bna', 'C08p50070' => 'bna', 'C08p50090' => 'bna', 'C09p38330' => 'bna', 'C09p53940' => 'bna', 'CAN.G1014.1' => 'can', 'CAN.G644.30' => 'can', 'CAN.G84.47' => 'can', 'CAN.G919.8' => 'can', 'CANSAT54G0113' => 'cansat', 'CANSAT54G1286' => 'cansat', 'CANSAT64G1020' => 'cansat', 'CARHR008080' => 'chi', 'CARHR008090' => 'chi', 'CARHR012130' => 'chi', 'CARHR038390' => 'chi', 'CARHR082330' => 'chi', 'CARHR120520' => 'chi', 'CARHR151470' => 'chi', 'CARHR190950' => 'chi', 'Carub.0001s0760' => 'cru', 'Carub.0001s1146' => 'cru', 'Carub.0003s0721' => 'cru', 'Carub.0004s0858' => 'cru', 'Carub.0005s1040' => 'cru', 'Carub.0006s2035' => 'cru', 'Carub.0015s0005' => 'cru', 'Ca_01607_v3' => 'car', 'Ca_01677_v3' => 'car', 'Ca_06087_v3' => 'car', 'Ca_19238_v3' => 'car', 'Ca_19373_v3' => 'car', 'Ca_21079_v3' => 'car', 'CBR_g54016' => 'cbr', 'CBR_g54018' => 'cbr', 'CBR_g54020' => 'cbr', 'Cc01_g09780' => 'ccan', 'Cc01_g11680' => 'ccan', 'Cc02_g15610' => 'ccan', 'Cc05_g04350' => 'ccan', 'Cc09_g01580' => 'ccan', 'CDE01G0795' => 'cde', 'CDE02G2024' => 'cde', 'CDE02G2260' => 'cde', 'CDE02G4561' => 'cde', 'CDE05G2733' => 'cde', 'CDE05G3422' => 'cde', 'CDE06G2003' => 'cde', 'CDE08G0576' => 'cde', 'CDE09G0048' => 'cde', 'CDE11G0805' => 'cde', 'Cfa003644' => 'cfa', 'Cfa006290' => 'cfa', 'Cfa010080' => 'cfa', 'Cfa011376' => 'cfa', 'Cfa011576' => 'cfa', 'Cfa011577' => 'cfa', 'Cfa014389' => 'cfa', 'Ciclev10006044m.g' => 'ccl', 'Ciclev10006954m.g' => 'ccl', 'Ciclev10015131m.g' => 'ccl', 'Ciclev10015580m.g' => 'ccl', 'Ciclev10028359m.g' => 'ccl', 'Ciclev10028573m.g' => 'ccl', 'CiPaw.03G159300' => 'cil', 'CiPaw.04G115100' => 'cil', 'CiPaw.09G092800' => 'cil', 'CiPaw.10G071800' => 'cil', 'CiPaw.13G105800' => 'cil', 'CiPaw.13G141000' => 'cil', 'CiPaw.14G103400' => 'cil', 'ClCG01G012700' => 'cla', 'ClCG01G012720' => 'cla', 'ClCG01G021920' => 'cla', 'ClCG02G008870' => 'cla', 'ClCG02G020840' => 'cla', 'ClCG02G021930' => 'cla', 'COL.COLO4_19302' => 'col', 'COL.COLO4_25262' => 'col', 'COL.COLO4_31788' => 'col', 'Cpa.g.c34684' => 'cpa', 'Cpa.g.c36520.1' => 'cpa', 'Cpa.g.c45626' => 'cpa', 'Cpa.g.sc121.17' => 'cpa', 'Cpa.g.sc13.22' => 'cpa', 'Cpa.g.sc87.88' => 'cpa', 'Cre06.g261800' => 'cre', 'CsaV3_1G014500' => 'csa', 'CsaV3_1G014510' => 'csa', 'CsaV3_2G034880' => 'csa', 'CsaV3_6G014760' => 'csa', 'CsaV3_6G021500' => 'csa', 'CsaV3_6G048980' => 'csa', 'CSS0002511' => 'camsi', 'CSS0007556' => 'camsi', 'CSS0008532' => 'camsi', 'CSS0009709' => 'camsi', 'CSS0010486' => 'camsi', 'CSS0016768' => 'camsi', 'CSS0023512' => 'camsi', 'CSS0025341' => 'camsi', 'CSS0027999' => 'camsi', 'CSS0028944' => 'camsi', 'CSS0032292' => 'camsi', 'CSS0032464' => 'camsi', 'CSS0037153' => 'camsi', 'CSS0039256' => 'camsi', 'CSS0048392' => 'camsi', 'CSS0050458' => 'camsi', 'DCAR_004224' => 'dca', 'DCAR_006147' => 'dca', 'DCAR_006465' => 'dca', 'DCAR_008159' => 'dca', 'DCAR_012164' => 'dca', 'DCAR_019764' => 'dca', 'Dinv05418' => 'din', 'Dinv10839' => 'din', 'Dinv12521' => 'din', 'Dinv13900' => 'din', 'Dinv29426' => 'din', 'Duzib150G0263' => 'dzi', 'Duzib168G1178' => 'dzi', 'Duzib168G1924' => 'dzi', 'Duzib170G0299' => 'dzi', 'Duzib170G0813' => 'dzi', 'Duzib235G1128' => 'dzi', 'Duzib248G1060' => 'dzi', 'ECA232G1910' => 'eca', 'ECA233G4621' => 'eca', 'ECA238G1216' => 'eca', 'ECA238G1784' => 'eca', 'ECA248G1242' => 'eca', 'EL10Ac8g20071' => 'bvu', 'EL10Ac9g21086' => 'bvu', 'EL10Ac9g22407' => 'bvu', 'EL10Ac9g22412' => 'bvu', 'Eucgr.A01119' => 'egr', 'Eucgr.E04043' => 'egr', 'Eucgr.J00428' => 'egr', 'Eucgr.J00958' => 'egr', 'FAN11G3091' => 'fan', 'FAN11G3651' => 'fan', 'FAN16G2566' => 'fan', 'FAN21G3155' => 'fan', 'FAN21G3400' => 'fan', 'FAN21G3543' => 'fan', 'FAN25G0234' => 'fan', 'FAN25G1422' => 'fan', 'FAN25G3392' => 'fan', 'FvH4_3g01940' => 'fve', 'FvH4_3g29870' => 'fve', 'FvH4_3g33680' => 'fve', 'Glyma.09G004200' => 'gma', 'Glyma.11G151288' => 'gma', 'Glyma.11G189100' => 'gma', 'Glyma.12G072500' => 'gma', 'Glyma.12G085500' => 'gma', 'Glyma.12G181800' => 'gma', 'Glyma.12G193000' => 'gma', 'Glyma.13G309300' => 'gma', 'Glyma.13G319000' => 'gma', 'Glyma.17G012600' => 'gma', 'Gohir.A06G148600' => 'ghi', 'Gohir.A07G115800' => 'ghi', 'Gohir.A08G003600' => 'ghi', 'Gohir.A09G093300' => 'ghi', 'Gohir.A09G105400' => 'ghi', 'Gohir.A09G105500' => 'ghi', 'Gohir.D06G154600' => 'ghi', 'Gohir.D07G120200' => 'ghi', 'Gohir.D08G013900' => 'ghi', 'Gohir.D09G093100' => 'ghi', 'Gohir.D09G102200' => 'ghi', 'Gohir.D09G102300' => 'ghi', 'Gorai.001G129400' => 'gra', 'Gorai.004G008200' => 'gra', 'Gorai.006G109800' => 'gra', 'Gorai.006G119500' => 'gra', 'Gorai.006G121300' => 'gra', 'Gorai.010G180700' => 'gra', 'GSVIVG01012716001' => 'vvi', 'GSVIVG01025118001' => 'vvi', 'GSVIVG01030439001' => 'vvi', 'GSVIVG01031397001' => 'vvi', 'HanXRQChr01g0004201' => 'han', 'HanXRQChr02g0054941' => 'han', 'HanXRQChr05g0141811' => 'han', 'HanXRQChr07g0197751' => 'han', 'HanXRQChr11g0346691' => 'han', 'HanXRQChr13g0396971' => 'han', 'HanXRQChr14g0432951' => 'han', 'HanXRQChr14g0452001' => 'han', 'HanXRQChr15g0496681' => 'han', 'HanXRQChr17g0557491' => 'han', 'HanXRQChr17g0557501' => 'han', 'Haze_06809' => 'cav', 'Haze_12852' => 'cav', 'Haze_15850' => 'cav', 'Haze_23446' => 'cav', 'Haze_23942' => 'cav', 'Haze_23943' => 'cav', 'Hma1.2p1_0091F.1_g046450' => 'hma', 'Hma1.2p1_0128F.1_g059910' => 'hma', 'Hma1.2p1_0249F.1_g102260' => 'hma', 'Hma1.2p1_0453F.1_g156190' => 'hma', 'Hma1.2p1_0695F.1_g204380' => 'hma', 'Hma1.2p1_0749F.1_g212650' => 'hma', 'Hma1.2p1_2156F.1_g315420' => 'hma', 'Hma1.2p1_2686F.1_g326940' => 'hma', 'HPP92_006428' => 'vpl', 'HPP92_012069' => 'vpl', 'HPP92_014129' => 'vpl', 'HPP92_014133' => 'vpl', 'HPP92_017315' => 'vpl', 'HPP92_026445' => 'vpl', 'HPP92_026446' => 'vpl', 'Hund00774' => 'sun', 'Hund07682' => 'sun', 'Hund21413' => 'sun', 'Hund23462' => 'sun', 'Hund23463' => 'sun', 'Lalb_Chr03g0027911' => 'lal', 'Lalb_Chr13g0304271' => 'lal', 'Lalb_Chr19g0137471' => 'lal', 'Lalb_Chr22g0350651' => 'lal', 'Lalb_Chr24g0395151' => 'lal', 'Lj1A1231T40' => 'lonja', 'Lj1A221T48' => 'lonja', 'Lj1C924T12' => 'lonja', 'Lj2C993G6' => 'lonja', 'Lj3g0005790' => 'lja', 'Lj3g0015432' => 'lja', 'Lj3g0017722' => 'lja', 'Lj3g0018497' => 'lja', 'Lj4g0025071' => 'lja', 'Lsat_1_v5_gn_1_129680' => 'lsa', 'Lsat_1_v5_gn_2_25321' => 'lsa', 'Lsat_1_v5_gn_2_95461' => 'lsa', 'Lsat_1_v5_gn_4_159620' => 'lsa', 'Lsat_1_v5_gn_6_41301' => 'lsa', 'Lsat_1_v5_gn_6_74660' => 'lsa', 'Lsat_1_v5_gn_7_11520' => 'lsa', 'Lsat_1_v5_gn_9_67680' => 'lsa', 'Manes.04G008300' => 'mes', 'Manes.04G008400' => 'mes', 'Manes.04G026500' => 'mes', 'Manes.10G135300' => 'mes', 'Manes.11G157300' => 'mes', 'Manes.12G074000' => 'mes', 'Manes.16G006200' => 'mes', 'Manes.17G026400' => 'mes', 'Mapoly0024s0086' => 'mpo', 'Mapoly0024s0087' => 'mpo', 'Mapoly0071s0057' => 'mpo', 'Mapoly0204s0012' => 'mpo', 'MBI04_g37681_MAGBIO' => 'mbi', 'MBI05_g17779_MAGBIO' => 'mbi', 'MBI12_g31184_MAGBIO' => 'mbi', 'MBI17_g11083_MAGBIO' => 'mbi', 'MBI18_g03883_MAGBIO' => 'mbi', 'MBI18_g28940_MAGBIO' => 'mbi', 'MCO01G690' => 'mco', 'MD03G1109900' => 'mdo', 'MD03G1134800' => 'mdo', 'MD05G1348000' => 'mdo', 'MD10G1322400' => 'mdo', 'MD11G1123300' => 'mdo', 'MD11G1157600' => 'mdo', 'Medtr2g084875' => 'mtr', 'Medtr2g088130' => 'mtr', 'Medtr4g055310' => 'mtr', 'Medtr4g061070' => 'mtr', 'Medtr4g132250' => 'mtr', 'MELO3C004795.2' => 'cme', 'MELO3C004797.2' => 'cme', 'MELO3C007396.2' => 'cme', 'MELO3C019277.2' => 'cme', 'MELO3C021449.2' => 'cme', 'MELO3C025736.2' => 'cme', 'Migut.D02175' => 'egut', 'Migut.H01573' => 'egut', 'Migut.M01327' => 'egut', 'Migut.N02513' => 'egut', 'MSTRG.14638' => 'ama', 'MSTRG.18632' => 'ama', 'MSTRG.7203' => 'ama', 'Nitab4.5_0000533g0140' => 'nta', 'Nitab4.5_0000888g0150' => 'nta', 'Nitab4.5_0001453g0040' => 'nta', 'Nitab4.5_0002827g0090' => 'nta', 'Nitab4.5_0003082g0040' => 'nta', 'Nitab4.5_0007799g0040' => 'nta', 'Nitab4.5_0008983g0010' => 'nta', 'Nitab4.5_0009017g0020' => 'nta', 'Nn1g02132' => 'nnu', 'Nn1g03492' => 'nnu', 'Nn1g03493' => 'nnu', 'Nn1g03494' => 'nnu', 'Nn1g07164' => 'nnu', 'Nn1g07291' => 'nnu', 'Nn2g10655' => 'nnu', 'Nn2g11652' => 'nnu', 'Nn2g14008' => 'nnu', 'Nn3g17476' => 'nnu', 'Nn3g17477' => 'nnu', 'Nn4g22370' => 'nnu', 'Nn4g25255' => 'nnu', 'Nn5g27755' => 'nnu', 'Nn6g34260' => 'nnu', 'Nn6g35041' => 'nnu', 'Oeu005924.1' => 'oeu', 'Oeu008383.1' => 'oeu', 'Oeu014928.1' => 'oeu', 'Oeu019889.1' => 'oeu', 'Oeu022271.1' => 'oeu', 'Oeu025271.1' => 'oeu', 'Oeu036302.1' => 'oeu', 'Oeu044100.1' => 'oeu', 'Os01g0528300' => 'osa', 'Os03g0286200' => 'osa', 'Os04g0406600' => 'osa', 'Os07g0512000' => 'osa', 'Os07g0694600' => 'osa', 'Os08g0411000' => 'osa', 'Os09g0565700' => 'osa', 'Os09g0566050' => 'osa', 'Os10g0523700' => 'osa', 'Peaxi162Scf00002g00514' => 'pax', 'Peaxi162Scf00047g01817' => 'pax', 'Peaxi162Scf00114g00001' => 'pax', 'Peaxi162Scf00147g00613' => 'pax', 'Peaxi162Scf00389g00425' => 'pax', 'PGR042G1139' => 'pgr', 'PGR042G3273' => 'pgr', 'PGR102G2180' => 'pgr', 'PGR119G0234' => 'pgr', 'PGR119G0668' => 'pgr', 'PGSC0003DMG400007122' => 'stu', 'PGSC0003DMG400016478' => 'stu', 'PGSC0003DMG400025374' => 'stu', 'PGSC0003DMG400026536' => 'stu', 'Phvul.003G079600' => 'pvu', 'Phvul.005G115600' => 'pvu', 'Phvul.005G127100' => 'pvu', 'Phvul.006G149500' => 'pvu', 'Phvul.006G149600' => 'pvu', 'Phvul.011G071800' => 'pvu', 'Phvul.011G090400' => 'pvu', 'Potri.004G013400' => 'ptr', 'Potri.004G188100' => 'ptr', 'Potri.008G195500' => 'ptr', 'Potri.009G148800' => 'ptr', 'Potri.011G004700' => 'ptr', 'Pp3c17_22810' => 'ppa', 'Pp3c18_4480' => 'ppa', 'Pp3c19_13030' => 'ppa', 'Pp3c1_33620' => 'ppa', 'Pp3c2_9380' => 'ppa', 'PRCOL_00001023' => 'pco', 'Prupe.3G216300' => 'ppe', 'Prupe.4G019500' => 'ppe', 'Prupe.6G092500' => 'ppe', 'Prupe.6G119200' => 'ppe', 'Psat0s1945g0080' => 'psa', 'Psat0s4167g0040' => 'psa', 'Psat1g185800' => 'psa', 'Psat4g006440' => 'psa', 'Psat4g006480' => 'psa', 'Psat4g168120' => 'psa', 'Psat5g255680' => 'psa', 'Psat5g261760' => 'psa', 'Psat7g222120' => 'psa', 'PSO063G7252' => 'pso', 'PSO170G4778' => 'pso', 'PSO210G2249' => 'pso', 'PSO339G2411' => 'pso', 'PSO339G2457' => 'pso', 'PSO339G2854' => 'pso', 'PSO339G4288' => 'pso', 'PSO339G4615' => 'pso', 'PSO384G2796' => 'pso', 'PSO384G2940' => 'pso', 'PSO384G4227' => 'pso', 'PSO478G1425' => 'pso', 'PSO541G3863' => 'pso', 'PSO675G0507' => 'pso', 'PSO782G0338' => 'pso', 'PSO832G0644' => 'pso', 'QL01p013664' => 'qlo', 'QL01p036598' => 'qlo', 'QL05p072984' => 'qlo', 'QL08p005768' => 'qlo', 'QL08p032743' => 'qlo', 'QL93p0073_0439' => 'qlo', 'QL93p0073_0444' => 'qlo', 'RcHm_v2.0_Chr5g0002851' => 'rch', 'RcHm_v2.0_Chr5g0055201' => 'rch', 'RcHm_v2.0_Chr5g0061191' => 'rch', 'RcHm_v2.0_Chr7g0203231' => 'rch', 'Rhsim01G0208100' => 'rsi', 'Rhsim01G0208200' => 'rsi', 'Rhsim02G0106500' => 'rsi', 'Rhsim03G0107900' => 'rsi', 'Rhsim06G0163400' => 'rsi', 'Rhsim13G0105200' => 'rsi', 'Sabra04G0006300' => 'sbr', 'Sabra04G0127000' => 'sbr', 'Sabra08G0148700' => 'sbr', 'Sabra09G0117400' => 'sbr', 'SalBow1G3326' => 'sbo', 'SalBow3G3228' => 'sbo', 'SalBow6G1634' => 'sbo', 'SalBow6G3603' => 'sbo', 'SalBow6G5266' => 'sbo', 'SalBow7G2265' => 'sbo', 'SalBow8G0850' => 'sbo', 'SalBow8G2592' => 'sbo', 'Sc05g0009240' => 'sci', 'Sc12g0002300' => 'sci', 'Sc21g0000100' => 'sci', 'Sc21g0004720' => 'sci', 'Sed0002949' => 'sed', 'Sed0004114' => 'sed', 'Sed0004306' => 'sed', 'Sed0006172' => 'sed', 'Sed0008413' => 'sed', 'Sed0013809' => 'sed', 'Sed0019556' => 'sed', 'SEGI_03570' => 'sgi', 'SEGI_07859' => 'sgi', 'SEGI_15042' => 'sgi', 'SEGI_16263' => 'sgi', 'SEGI_16552' => 'sgi', 'SEGI_24331' => 'sgi', 'SEGI_27316' => 'sgi', 'SEGI_29521' => 'sgi', 'SEGI_41342' => 'sgi', 'SGA_v2.0_scaffold27G11617' => 'sas', 'SGA_v2.0_scaffold316G48428' => 'sas', 'SGA_v2.0_scaffold49G18261' => 'sas', 'SGA_v2.0_scaffold7G03831' => 'sas', 'SGA_v2.0_scaffold93G28359' => 'sas', 'SHI02210' => 'shi', 'SHI06028' => 'shi', 'SHI06321' => 'shi', 'SMO111G0012' => 'smo', 'SMO228G0080' => 'smo', 'SMO356G0756' => 'smo', 'Solyc02g080620.3' => 'sly', 'Solyc06g074530.1' => 'sly', 'Solyc11g066890.1' => 'sly', 'Solyc11g072520.3' => 'sly', 'Sopen02g025330' => 'spe', 'Sopen06g031000' => 'spe', 'Sopen09g008240' => 'spe', 'Sopen09g025210' => 'spe', 'Sopen11g026600' => 'spe', 'Sopen11g030170' => 'spe', 'Sp1g10420' => 'spa', 'Sp3g06570' => 'spa', 'Sp4g10660' => 'spa', 'Sp5g16460' => 'spa', 'Sp6g22710' => 'spa', 'TAR365G0112' => 'tar', 'TAR369G0717' => 'tar', 'TAR374G0976' => 'tar', 'TAR623G1128' => 'tar', 'TAR626G1937' => 'tar', 'TAR627G0123' => 'tar', 'TAR628G0305' => 'tar', 'TAR636G1176' => 'tar', 'TAR636G2442' => 'tar', 'THA.LOC104800556' => 'tha', 'THA.LOC104809501' => 'tha', 'THA.LOC104815126' => 'tha', 'THA.LOC104815732' => 'tha', 'THA.LOC104823528' => 'tha', 'Thecc.02G365600' => 'tca', 'Thecc.06G222300' => 'tca', 'Thecc.09G261800' => 'tca', 'Thecc.09G291400' => 'tca', 'Thhalv10003028m.g' => 'esa', 'Thhalv10007886m.g' => 'esa', 'Thhalv10016085m.g' => 'esa', 'Thhalv10016681m.g' => 'esa', 'Thhalv10020951m.g' => 'esa', 'TPR.G15598' => 'tpr', 'TPR.G29305' => 'tpr', 'TPR.G32395' => 'tpr', 'TPR.G36998' => 'tpr', 'TPR.G4227' => 'tpr', 'TWI18G1433' => 'twi', 'TWI31G0755' => 'twi', 'TWI38G0912' => 'twi', 'TWI75G1097' => 'twi', 'TWI75G1619' => 'twi', 'TWI79G1336' => 'twi', 'unitig_0.g943' => 'ugi', 'unitig_0.g944' => 'ugi', 'unitig_22.g6646' => 'ugi', 'unitig_37.g12681' => 'ugi', 'unitig_8.g3290' => 'ugi', 'vmacro03278' => 'vma', 'vmacro12197' => 'vma', 'vmacro14478' => 'vma', 'vmacro15787' => 'vma', 'vmacro15789' => 'vma', 'vmacro15790' => 'vma', 'vmacro15806' => 'vma', 'vmacro22907' => 'vma', 'vmacro22908' => 'vma', 'vmacro22909' => 'vma', 'vmacro23108' => 'vma', 'VMungo0540G0540' => 'vmu', 'VMungo0540G2468' => 'vmu', 'VMungo1080G0390' => 'vmu', 'VMungo1080G1165' => 'vmu', 'VMungo1127G0170' => 'vmu', 'VMungo1127G2099' => 'vmu', 'VMungo1215G3013' => 'vmu', 'Zm00001eb013110' => 'zma', 'Zm00001eb084260' => 'zma', 'Zm00001eb096110' => 'zma', 'Zm00001eb217510' => 'zma', 'Zm00001eb322550' => 'zma', 'Zm00001eb390770' => 'zma', 'Zm00001eb397170' => 'zma', 'Zm00001eb404610' => 'zma', 'Zm00001eb421790' => 'zma' ), 'gf_id' => 'HOM05D000911', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000911' ), 'data_identifier' => 'HOM05D000911', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000911', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27780' => 'bna', 'A03p35380' => 'bna', 'A04p21160' => 'bna', 'A05p40570' => 'bna', 'A06p26900' => 'bna', 'A08p33230' => 'bna', 'A09p65960' => 'bna', 'A10p18290' => 'bna', 'Aa31LG1G12990' => 'aar', 'Aa31LG1G2980' => 'aar', 'Aa31LG4G14320' => 'aar', 'Aa31LG7G11800' => 'aar', 'Aa31sc36G50' => 'aar', 'Aa31sc36G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3721' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5459' => 'aag', 'Actinidia03028' => 'ach', 'Actinidia03753' => 'ach', 'Actinidia04187' => 'ach', 'Actinidia05509' => 'ach', 'Actinidia24180' => 'ach', 'Actinidia26906' => 'ach', 'Actinidia37097' => 'ach', 'Actinidia38249' => 'ach', 'Ah.01g003470' => 'amhyb', 'Ah.01g004580' => 'amhyb', 'Ah.01g014850' => 'amhyb', 'Ah.01g016830' => 'amhyb', 'Ah.14g088000' => 'amhyb', 'AL1G22980' => 'aly', 'AL3G18990' => 'aly', 'AL4G22440' => 'aly', 'AL4G33180' => 'aly', 'AL5G22920' => 'aly', 'AL6G33660' => 'aly', 'AL8G20720' => 'aly', 'Aqoxy1G00935' => 'aox', 'Aqoxy1G02094' => 'aox', 'Aqoxy2G01239' => 'aox', 'Aqoxy4G01870' => 'aox', 'Aqoxy7G00450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.36ZVTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71EM27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5D6C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH3WRE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3NCM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RIM768' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YB5YRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z36GDV' => 'arhy', 'AT1G08250' => 'ath', 'AT1G11790' => 'ath', 'AT2G27820' => 'ath', 'AT3G07630' => 'ath', 'AT3G44720' => 'ath', 'AT5G22630' => 'ath', 'ATR0693G304' => 'atr', 'ATR0794G109' => 'atr', 'ATR0820G120' => 'atr', 'ATR1159G064' => 'atr', 'Atru.chr10.2239' => 'acertr', 'Atru.chr3.3371' => 'acertr', 'Atru.chr6.3202' => 'acertr', 'AUR62006499' => 'cqu', 'AUR62012718' => 'cqu', 'AUR62021938' => 'cqu', 'AUR62023932' => 'cqu', 'AUR62025034' => 'cqu', 'AUR62025035' => 'cqu', 'AUR62038307' => 'cqu', 'AUR62043466' => 'cqu', 'BcaB02g10748' => 'bca', 'BcaB03g13231' => 'bca', 'BcaB03g14689' => 'bca', 'BcaB05g22716' => 'bca', 'BcaB06g28172' => 'bca', 'BcaB08g36413' => 'bca', 'BcaC01g02186' => 'bca', 'BcaC01g04272' => 'bca', 'BcaC02g08080' => 'bca', 'BcaC02g08227' => 'bca', 'BcaC03g13901' => 'bca', 'BcaC04g19593' => 'bca', 'BcaC04g20874' => 'bca', 'BcaC05g29557' => 'bca', 'BcaC06g35505' => 'bca', 'BcaC07g41954' => 'bca', 'BcaC07g41955' => 'bca', 'BcaC07g41956' => 'bca', 'BcaC07g42519' => 'bca', 'BcaC07g42520' => 'bca', 'BcaC07g42523' => 'bca', 'BcaC07g42524' => 'bca', 'BcaC07g42525' => 'bca', 'BcaC08g47480' => 'bca', 'BcaC08g47481' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00530' => 'bna', 'BolC2t07178H' => 'bol', 'BolC3t16567H' => 'bol', 'BolC4t27234H' => 'bol', 'BolC5t29728H' => 'bol', 'BolC5t34622H' => 'bol', 'BolC6t40321H' => 'bol', 'BolC7t42028H' => 'bol', 'BolC8t49125H' => 'bol', 'BolC8t52538H' => 'bol', 'BolC8t52539H' => 'bol', 'BolC9t56681H' => 'bol', 'BolC9t58266H' => 'bol', 'BolSC21t60294H' => 'bol', 'BraA02t05670Z' => 'bra', 'BraA03t12716Z' => 'bra', 'BraA04t17685Z' => 'bra', 'BraA05t22788Z' => 'bra', 'BraA06t24032Z' => 'bra', 'BraA06t25625Z' => 'bra', 'BraA07t27930Z' => 'bra', 'BraA08t35242Z' => 'bra', 'BraA09t38609Z' => 'bra', 'BraA10t43905Z' => 'bra', 'C02p11060' => 'bna', 'C03p42990' => 'bna', 'C03p67310' => 'bna', 'C04p56990' => 'bna', 'C04p58660' => 'bna', 'C05p09890' => 'bna', 'C05p59680' => 'bna', 'C06p19830' => 'bna', 'C06p53040' => 'bna', 'C07p15230' => 'bna', 'C08p50070' => 'bna', 'C08p50090' => 'bna', 'C09p38330' => 'bna', 'C09p53940' => 'bna', 'CAN.G1014.1' => 'can', 'CAN.G644.30' => 'can', 'CAN.G84.47' => 'can', 'CAN.G919.8' => 'can', 'CANSAT54G0113' => 'cansat', 'CANSAT54G1286' => 'cansat', 'CANSAT64G1020' => 'cansat', 'CARHR008080' => 'chi', 'CARHR008090' => 'chi', 'CARHR012130' => 'chi', 'CARHR038390' => 'chi', 'CARHR082330' => 'chi', 'CARHR120520' => 'chi', 'CARHR151470' => 'chi', 'CARHR190950' => 'chi', 'Carub.0001s0760' => 'cru', 'Carub.0001s1146' => 'cru', 'Carub.0003s0721' => 'cru', 'Carub.0004s0858' => 'cru', 'Carub.0005s1040' => 'cru', 'Carub.0006s2035' => 'cru', 'Carub.0015s0005' => 'cru', 'Ca_01607_v3' => 'car', 'Ca_01677_v3' => 'car', 'Ca_06087_v3' => 'car', 'Ca_19238_v3' => 'car', 'Ca_19373_v3' => 'car', 'Ca_21079_v3' => 'car', 'CBR_g54016' => 'cbr', 'CBR_g54018' => 'cbr', 'CBR_g54020' => 'cbr', 'Cc01_g09780' => 'ccan', 'Cc01_g11680' => 'ccan', 'Cc02_g15610' => 'ccan', 'Cc05_g04350' => 'ccan', 'Cc09_g01580' => 'ccan', 'CDE01G0795' => 'cde', 'CDE02G2024' => 'cde', 'CDE02G2260' => 'cde', 'CDE02G4561' => 'cde', 'CDE05G2733' => 'cde', 'CDE05G3422' => 'cde', 'CDE06G2003' => 'cde', 'CDE08G0576' => 'cde', 'CDE09G0048' => 'cde', 'CDE11G0805' => 'cde', 'Cfa003644' => 'cfa', 'Cfa006290' => 'cfa', 'Cfa010080' => 'cfa', 'Cfa011376' => 'cfa', 'Cfa011576' => 'cfa', 'Cfa011577' => 'cfa', 'Cfa014389' => 'cfa', 'Ciclev10006044m.g' => 'ccl', 'Ciclev10006954m.g' => 'ccl', 'Ciclev10015131m.g' => 'ccl', 'Ciclev10015580m.g' => 'ccl', 'Ciclev10028359m.g' => 'ccl', 'Ciclev10028573m.g' => 'ccl', 'CiPaw.03G159300' => 'cil', 'CiPaw.04G115100' => 'cil', 'CiPaw.09G092800' => 'cil', 'CiPaw.10G071800' => 'cil', 'CiPaw.13G105800' => 'cil', 'CiPaw.13G141000' => 'cil', 'CiPaw.14G103400' => 'cil', 'ClCG01G012700' => 'cla', 'ClCG01G012720' => 'cla', 'ClCG01G021920' => 'cla', 'ClCG02G008870' => 'cla', 'ClCG02G020840' => 'cla', 'ClCG02G021930' => 'cla', 'COL.COLO4_19302' => 'col', 'COL.COLO4_25262' => 'col', 'COL.COLO4_31788' => 'col', 'Cpa.g.c34684' => 'cpa', 'Cpa.g.c36520.1' => 'cpa', 'Cpa.g.c45626' => 'cpa', 'Cpa.g.sc121.17' => 'cpa', 'Cpa.g.sc13.22' => 'cpa', 'Cpa.g.sc87.88' => 'cpa', 'Cre06.g261800' => 'cre', 'CsaV3_1G014500' => 'csa', 'CsaV3_1G014510' => 'csa', 'CsaV3_2G034880' => 'csa', 'CsaV3_6G014760' => 'csa', 'CsaV3_6G021500' => 'csa', 'CsaV3_6G048980' => 'csa', 'CSS0002511' => 'camsi', 'CSS0007556' => 'camsi', 'CSS0008532' => 'camsi', 'CSS0009709' => 'camsi', 'CSS0010486' => 'camsi', 'CSS0016768' => 'camsi', 'CSS0023512' => 'camsi', 'CSS0025341' => 'camsi', 'CSS0027999' => 'camsi', 'CSS0028944' => 'camsi', 'CSS0032292' => 'camsi', 'CSS0032464' => 'camsi', 'CSS0037153' => 'camsi', 'CSS0039256' => 'camsi', 'CSS0048392' => 'camsi', 'CSS0050458' => 'camsi', 'DCAR_004224' => 'dca', 'DCAR_006147' => 'dca', 'DCAR_006465' => 'dca', 'DCAR_008159' => 'dca', 'DCAR_012164' => 'dca', 'DCAR_019764' => 'dca', 'Dinv05418' => 'din', 'Dinv10839' => 'din', 'Dinv12521' => 'din', 'Dinv13900' => 'din', 'Dinv29426' => 'din', 'Duzib150G0263' => 'dzi', 'Duzib168G1178' => 'dzi', 'Duzib168G1924' => 'dzi', 'Duzib170G0299' => 'dzi', 'Duzib170G0813' => 'dzi', 'Duzib235G1128' => 'dzi', 'Duzib248G1060' => 'dzi', 'ECA232G1910' => 'eca', 'ECA233G4621' => 'eca', 'ECA238G1216' => 'eca', 'ECA238G1784' => 'eca', 'ECA248G1242' => 'eca', 'EL10Ac8g20071' => 'bvu', 'EL10Ac9g21086' => 'bvu', 'EL10Ac9g22407' => 'bvu', 'EL10Ac9g22412' => 'bvu', 'Eucgr.A01119' => 'egr', 'Eucgr.E04043' => 'egr', 'Eucgr.J00428' => 'egr', 'Eucgr.J00958' => 'egr', 'FAN11G3091' => 'fan', 'FAN11G3651' => 'fan', 'FAN16G2566' => 'fan', 'FAN21G3155' => 'fan', 'FAN21G3400' => 'fan', 'FAN21G3543' => 'fan', 'FAN25G0234' => 'fan', 'FAN25G1422' => 'fan', 'FAN25G3392' => 'fan', 'FvH4_3g01940' => 'fve', 'FvH4_3g29870' => 'fve', 'FvH4_3g33680' => 'fve', 'Glyma.09G004200' => 'gma', 'Glyma.11G151288' => 'gma', 'Glyma.11G189100' => 'gma', 'Glyma.12G072500' => 'gma', 'Glyma.12G085500' => 'gma', 'Glyma.12G181800' => 'gma', 'Glyma.12G193000' => 'gma', 'Glyma.13G309300' => 'gma', 'Glyma.13G319000' => 'gma', 'Glyma.17G012600' => 'gma', 'Gohir.A06G148600' => 'ghi', 'Gohir.A07G115800' => 'ghi', 'Gohir.A08G003600' => 'ghi', 'Gohir.A09G093300' => 'ghi', 'Gohir.A09G105400' => 'ghi', 'Gohir.A09G105500' => 'ghi', 'Gohir.D06G154600' => 'ghi', 'Gohir.D07G120200' => 'ghi', 'Gohir.D08G013900' => 'ghi', 'Gohir.D09G093100' => 'ghi', 'Gohir.D09G102200' => 'ghi', 'Gohir.D09G102300' => 'ghi', 'Gorai.001G129400' => 'gra', 'Gorai.004G008200' => 'gra', 'Gorai.006G109800' => 'gra', 'Gorai.006G119500' => 'gra', 'Gorai.006G121300' => 'gra', 'Gorai.010G180700' => 'gra', 'GSVIVG01012716001' => 'vvi', 'GSVIVG01025118001' => 'vvi', 'GSVIVG01030439001' => 'vvi', 'GSVIVG01031397001' => 'vvi', 'HanXRQChr01g0004201' => 'han', 'HanXRQChr02g0054941' => 'han', 'HanXRQChr05g0141811' => 'han', 'HanXRQChr07g0197751' => 'han', 'HanXRQChr11g0346691' => 'han', 'HanXRQChr13g0396971' => 'han', 'HanXRQChr14g0432951' => 'han', 'HanXRQChr14g0452001' => 'han', 'HanXRQChr15g0496681' => 'han', 'HanXRQChr17g0557491' => 'han', 'HanXRQChr17g0557501' => 'han', 'Haze_06809' => 'cav', 'Haze_12852' => 'cav', 'Haze_15850' => 'cav', 'Haze_23446' => 'cav', 'Haze_23942' => 'cav', 'Haze_23943' => 'cav', 'Hma1.2p1_0091F.1_g046450' => 'hma', 'Hma1.2p1_0128F.1_g059910' => 'hma', 'Hma1.2p1_0249F.1_g102260' => 'hma', 'Hma1.2p1_0453F.1_g156190' => 'hma', 'Hma1.2p1_0695F.1_g204380' => 'hma', 'Hma1.2p1_0749F.1_g212650' => 'hma', 'Hma1.2p1_2156F.1_g315420' => 'hma', 'Hma1.2p1_2686F.1_g326940' => 'hma', 'HPP92_006428' => 'vpl', 'HPP92_012069' => 'vpl', 'HPP92_014129' => 'vpl', 'HPP92_014133' => 'vpl', 'HPP92_017315' => 'vpl', 'HPP92_026445' => 'vpl', 'HPP92_026446' => 'vpl', 'Hund00774' => 'sun', 'Hund07682' => 'sun', 'Hund21413' => 'sun', 'Hund23462' => 'sun', 'Hund23463' => 'sun', 'Lalb_Chr03g0027911' => 'lal', 'Lalb_Chr13g0304271' => 'lal', 'Lalb_Chr19g0137471' => 'lal', 'Lalb_Chr22g0350651' => 'lal', 'Lalb_Chr24g0395151' => 'lal', 'Lj1A1231T40' => 'lonja', 'Lj1A221T48' => 'lonja', 'Lj1C924T12' => 'lonja', 'Lj2C993G6' => 'lonja', 'Lj3g0005790' => 'lja', 'Lj3g0015432' => 'lja', 'Lj3g0017722' => 'lja', 'Lj3g0018497' => 'lja', 'Lj4g0025071' => 'lja', 'Lsat_1_v5_gn_1_129680' => 'lsa', 'Lsat_1_v5_gn_2_25321' => 'lsa', 'Lsat_1_v5_gn_2_95461' => 'lsa', 'Lsat_1_v5_gn_4_159620' => 'lsa', 'Lsat_1_v5_gn_6_41301' => 'lsa', 'Lsat_1_v5_gn_6_74660' => 'lsa', 'Lsat_1_v5_gn_7_11520' => 'lsa', 'Lsat_1_v5_gn_9_67680' => 'lsa', 'Manes.04G008300' => 'mes', 'Manes.04G008400' => 'mes', 'Manes.04G026500' => 'mes', 'Manes.10G135300' => 'mes', 'Manes.11G157300' => 'mes', 'Manes.12G074000' => 'mes', 'Manes.16G006200' => 'mes', 'Manes.17G026400' => 'mes', 'Mapoly0024s0086' => 'mpo', 'Mapoly0024s0087' => 'mpo', 'Mapoly0071s0057' => 'mpo', 'Mapoly0204s0012' => 'mpo', 'MBI04_g37681_MAGBIO' => 'mbi', 'MBI05_g17779_MAGBIO' => 'mbi', 'MBI12_g31184_MAGBIO' => 'mbi', 'MBI17_g11083_MAGBIO' => 'mbi', 'MBI18_g03883_MAGBIO' => 'mbi', 'MBI18_g28940_MAGBIO' => 'mbi', 'MCO01G690' => 'mco', 'MD03G1109900' => 'mdo', 'MD03G1134800' => 'mdo', 'MD05G1348000' => 'mdo', 'MD10G1322400' => 'mdo', 'MD11G1123300' => 'mdo', 'MD11G1157600' => 'mdo', 'Medtr2g084875' => 'mtr', 'Medtr2g088130' => 'mtr', 'Medtr4g055310' => 'mtr', 'Medtr4g061070' => 'mtr', 'Medtr4g132250' => 'mtr', 'MELO3C004795.2' => 'cme', 'MELO3C004797.2' => 'cme', 'MELO3C007396.2' => 'cme', 'MELO3C019277.2' => 'cme', 'MELO3C021449.2' => 'cme', 'MELO3C025736.2' => 'cme', 'Migut.D02175' => 'egut', 'Migut.H01573' => 'egut', 'Migut.M01327' => 'egut', 'Migut.N02513' => 'egut', 'MSTRG.14638' => 'ama', 'MSTRG.18632' => 'ama', 'MSTRG.7203' => 'ama', 'Nitab4.5_0000533g0140' => 'nta', 'Nitab4.5_0000888g0150' => 'nta', 'Nitab4.5_0001453g0040' => 'nta', 'Nitab4.5_0002827g0090' => 'nta', 'Nitab4.5_0003082g0040' => 'nta', 'Nitab4.5_0007799g0040' => 'nta', 'Nitab4.5_0008983g0010' => 'nta', 'Nitab4.5_0009017g0020' => 'nta', 'Nn1g02132' => 'nnu', 'Nn1g03492' => 'nnu', 'Nn1g03493' => 'nnu', 'Nn1g03494' => 'nnu', 'Nn1g07164' => 'nnu', 'Nn1g07291' => 'nnu', 'Nn2g10655' => 'nnu', 'Nn2g11652' => 'nnu', 'Nn2g14008' => 'nnu', 'Nn3g17476' => 'nnu', 'Nn3g17477' => 'nnu', 'Nn4g22370' => 'nnu', 'Nn4g25255' => 'nnu', 'Nn5g27755' => 'nnu', 'Nn6g34260' => 'nnu', 'Nn6g35041' => 'nnu', 'Oeu005924.1' => 'oeu', 'Oeu008383.1' => 'oeu', 'Oeu014928.1' => 'oeu', 'Oeu019889.1' => 'oeu', 'Oeu022271.1' => 'oeu', 'Oeu025271.1' => 'oeu', 'Oeu036302.1' => 'oeu', 'Oeu044100.1' => 'oeu', 'Os01g0528300' => 'osa', 'Os03g0286200' => 'osa', 'Os04g0406600' => 'osa', 'Os07g0512000' => 'osa', 'Os07g0694600' => 'osa', 'Os08g0411000' => 'osa', 'Os09g0565700' => 'osa', 'Os09g0566050' => 'osa', 'Os10g0523700' => 'osa', 'Peaxi162Scf00002g00514' => 'pax', 'Peaxi162Scf00047g01817' => 'pax', 'Peaxi162Scf00114g00001' => 'pax', 'Peaxi162Scf00147g00613' => 'pax', 'Peaxi162Scf00389g00425' => 'pax', 'PGR042G1139' => 'pgr', 'PGR042G3273' => 'pgr', 'PGR102G2180' => 'pgr', 'PGR119G0234' => 'pgr', 'PGR119G0668' => 'pgr', 'PGSC0003DMG400007122' => 'stu', 'PGSC0003DMG400016478' => 'stu', 'PGSC0003DMG400025374' => 'stu', 'PGSC0003DMG400026536' => 'stu', 'Phvul.003G079600' => 'pvu', 'Phvul.005G115600' => 'pvu', 'Phvul.005G127100' => 'pvu', 'Phvul.006G149500' => 'pvu', 'Phvul.006G149600' => 'pvu', 'Phvul.011G071800' => 'pvu', 'Phvul.011G090400' => 'pvu', 'Potri.004G013400' => 'ptr', 'Potri.004G188100' => 'ptr', 'Potri.008G195500' => 'ptr', 'Potri.009G148800' => 'ptr', 'Potri.011G004700' => 'ptr', 'Pp3c17_22810' => 'ppa', 'Pp3c18_4480' => 'ppa', 'Pp3c19_13030' => 'ppa', 'Pp3c1_33620' => 'ppa', 'Pp3c2_9380' => 'ppa', 'PRCOL_00001023' => 'pco', 'Prupe.3G216300' => 'ppe', 'Prupe.4G019500' => 'ppe', 'Prupe.6G092500' => 'ppe', 'Prupe.6G119200' => 'ppe', 'Psat0s1945g0080' => 'psa', 'Psat0s4167g0040' => 'psa', 'Psat1g185800' => 'psa', 'Psat4g006440' => 'psa', 'Psat4g006480' => 'psa', 'Psat4g168120' => 'psa', 'Psat5g255680' => 'psa', 'Psat5g261760' => 'psa', 'Psat7g222120' => 'psa', 'PSO063G7252' => 'pso', 'PSO170G4778' => 'pso', 'PSO210G2249' => 'pso', 'PSO339G2411' => 'pso', 'PSO339G2457' => 'pso', 'PSO339G2854' => 'pso', 'PSO339G4288' => 'pso', 'PSO339G4615' => 'pso', 'PSO384G2796' => 'pso', 'PSO384G2940' => 'pso', 'PSO384G4227' => 'pso', 'PSO478G1425' => 'pso', 'PSO541G3863' => 'pso', 'PSO675G0507' => 'pso', 'PSO782G0338' => 'pso', 'PSO832G0644' => 'pso', 'QL01p013664' => 'qlo', 'QL01p036598' => 'qlo', 'QL05p072984' => 'qlo', 'QL08p005768' => 'qlo', 'QL08p032743' => 'qlo', 'QL93p0073_0439' => 'qlo', 'QL93p0073_0444' => 'qlo', 'RcHm_v2.0_Chr5g0002851' => 'rch', 'RcHm_v2.0_Chr5g0055201' => 'rch', 'RcHm_v2.0_Chr5g0061191' => 'rch', 'RcHm_v2.0_Chr7g0203231' => 'rch', 'Rhsim01G0208100' => 'rsi', 'Rhsim01G0208200' => 'rsi', 'Rhsim02G0106500' => 'rsi', 'Rhsim03G0107900' => 'rsi', 'Rhsim06G0163400' => 'rsi', 'Rhsim13G0105200' => 'rsi', 'Sabra04G0006300' => 'sbr', 'Sabra04G0127000' => 'sbr', 'Sabra08G0148700' => 'sbr', 'Sabra09G0117400' => 'sbr', 'SalBow1G3326' => 'sbo', 'SalBow3G3228' => 'sbo', 'SalBow6G1634' => 'sbo', 'SalBow6G3603' => 'sbo', 'SalBow6G5266' => 'sbo', 'SalBow7G2265' => 'sbo', 'SalBow8G0850' => 'sbo', 'SalBow8G2592' => 'sbo', 'Sc05g0009240' => 'sci', 'Sc12g0002300' => 'sci', 'Sc21g0000100' => 'sci', 'Sc21g0004720' => 'sci', 'Sed0002949' => 'sed', 'Sed0004114' => 'sed', 'Sed0004306' => 'sed', 'Sed0006172' => 'sed', 'Sed0008413' => 'sed', 'Sed0013809' => 'sed', 'Sed0019556' => 'sed', 'SEGI_03570' => 'sgi', 'SEGI_07859' => 'sgi', 'SEGI_15042' => 'sgi', 'SEGI_16263' => 'sgi', 'SEGI_16552' => 'sgi', 'SEGI_24331' => 'sgi', 'SEGI_27316' => 'sgi', 'SEGI_29521' => 'sgi', 'SEGI_41342' => 'sgi', 'SGA_v2.0_scaffold27G11617' => 'sas', 'SGA_v2.0_scaffold316G48428' => 'sas', 'SGA_v2.0_scaffold49G18261' => 'sas', 'SGA_v2.0_scaffold7G03831' => 'sas', 'SGA_v2.0_scaffold93G28359' => 'sas', 'SHI02210' => 'shi', 'SHI06028' => 'shi', 'SHI06321' => 'shi', 'SMO111G0012' => 'smo', 'SMO228G0080' => 'smo', 'SMO356G0756' => 'smo', 'Solyc02g080620.3' => 'sly', 'Solyc06g074530.1' => 'sly', 'Solyc11g066890.1' => 'sly', 'Solyc11g072520.3' => 'sly', 'Sopen02g025330' => 'spe', 'Sopen06g031000' => 'spe', 'Sopen09g008240' => 'spe', 'Sopen09g025210' => 'spe', 'Sopen11g026600' => 'spe', 'Sopen11g030170' => 'spe', 'Sp1g10420' => 'spa', 'Sp3g06570' => 'spa', 'Sp4g10660' => 'spa', 'Sp5g16460' => 'spa', 'Sp6g22710' => 'spa', 'TAR365G0112' => 'tar', 'TAR369G0717' => 'tar', 'TAR374G0976' => 'tar', 'TAR623G1128' => 'tar', 'TAR626G1937' => 'tar', 'TAR627G0123' => 'tar', 'TAR628G0305' => 'tar', 'TAR636G1176' => 'tar', 'TAR636G2442' => 'tar', 'THA.LOC104800556' => 'tha', 'THA.LOC104809501' => 'tha', 'THA.LOC104815126' => 'tha', 'THA.LOC104815732' => 'tha', 'THA.LOC104823528' => 'tha', 'Thecc.02G365600' => 'tca', 'Thecc.06G222300' => 'tca', 'Thecc.09G261800' => 'tca', 'Thecc.09G291400' => 'tca', 'Thhalv10003028m.g' => 'esa', 'Thhalv10007886m.g' => 'esa', 'Thhalv10016085m.g' => 'esa', 'Thhalv10016681m.g' => 'esa', 'Thhalv10020951m.g' => 'esa', 'TPR.G15598' => 'tpr', 'TPR.G29305' => 'tpr', 'TPR.G32395' => 'tpr', 'TPR.G36998' => 'tpr', 'TPR.G4227' => 'tpr', 'TWI18G1433' => 'twi', 'TWI31G0755' => 'twi', 'TWI38G0912' => 'twi', 'TWI75G1097' => 'twi', 'TWI75G1619' => 'twi', 'TWI79G1336' => 'twi', 'unitig_0.g943' => 'ugi', 'unitig_0.g944' => 'ugi', 'unitig_22.g6646' => 'ugi', 'unitig_37.g12681' => 'ugi', 'unitig_8.g3290' => 'ugi', 'vmacro03278' => 'vma', 'vmacro12197' => 'vma', 'vmacro14478' => 'vma', 'vmacro15787' => 'vma', 'vmacro15789' => 'vma', 'vmacro15790' => 'vma', 'vmacro15806' => 'vma', 'vmacro22907' => 'vma', 'vmacro22908' => 'vma', 'vmacro22909' => 'vma', 'vmacro23108' => 'vma', 'VMungo0540G0540' => 'vmu', 'VMungo0540G2468' => 'vmu', 'VMungo1080G0390' => 'vmu', 'VMungo1080G1165' => 'vmu', 'VMungo1127G0170' => 'vmu', 'VMungo1127G2099' => 'vmu', 'VMungo1215G3013' => 'vmu', 'Zm00001eb013110' => 'zma', 'Zm00001eb084260' => 'zma', 'Zm00001eb096110' => 'zma', 'Zm00001eb217510' => 'zma', 'Zm00001eb322550' => 'zma', 'Zm00001eb390770' => 'zma', 'Zm00001eb397170' => 'zma', 'Zm00001eb404610' => 'zma', 'Zm00001eb421790' => 'zma' ) $gf_id = 'HOM05D000911' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000911' ) $data_identifier = 'HOM05D000911' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 16, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 5, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 6, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 8, 'nnu' => (int) 16, 'oeu' => (int) 8, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 5, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 16, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421790' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000911', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27780' => 'bna', 'A03p35380' => 'bna', 'A04p21160' => 'bna', 'A05p40570' => 'bna', 'A06p26900' => 'bna', 'A08p33230' => 'bna', 'A09p65960' => 'bna', 'A10p18290' => 'bna', 'Aa31LG1G12990' => 'aar', 'Aa31LG1G2980' => 'aar', 'Aa31LG4G14320' => 'aar', 'Aa31LG7G11800' => 'aar', 'Aa31sc36G50' => 'aar', 'Aa31sc36G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3721' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5459' => 'aag', 'Actinidia03028' => 'ach', 'Actinidia03753' => 'ach', 'Actinidia04187' => 'ach', 'Actinidia05509' => 'ach', 'Actinidia24180' => 'ach', 'Actinidia26906' => 'ach', 'Actinidia37097' => 'ach', 'Actinidia38249' => 'ach', 'Ah.01g003470' => 'amhyb', 'Ah.01g004580' => 'amhyb', 'Ah.01g014850' => 'amhyb', 'Ah.01g016830' => 'amhyb', 'Ah.14g088000' => 'amhyb', 'AL1G22980' => 'aly', 'AL3G18990' => 'aly', 'AL4G22440' => 'aly', 'AL4G33180' => 'aly', 'AL5G22920' => 'aly', 'AL6G33660' => 'aly', 'AL8G20720' => 'aly', 'Aqoxy1G00935' => 'aox', 'Aqoxy1G02094' => 'aox', 'Aqoxy2G01239' => 'aox', 'Aqoxy4G01870' => 'aox', 'Aqoxy7G00450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.36ZVTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71EM27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5D6C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH3WRE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3NCM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RIM768' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YB5YRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z36GDV' => 'arhy', 'AT1G08250' => 'ath', 'AT1G11790' => 'ath', 'AT2G27820' => 'ath', 'AT3G07630' => 'ath', 'AT3G44720' => 'ath', 'AT5G22630' => 'ath', 'ATR0693G304' => 'atr', 'ATR0794G109' => 'atr', 'ATR0820G120' => 'atr', 'ATR1159G064' => 'atr', 'Atru.chr10.2239' => 'acertr', 'Atru.chr3.3371' => 'acertr', 'Atru.chr6.3202' => 'acertr', 'AUR62006499' => 'cqu', 'AUR62012718' => 'cqu', 'AUR62021938' => 'cqu', 'AUR62023932' => 'cqu', 'AUR62025034' => 'cqu', 'AUR62025035' => 'cqu', 'AUR62038307' => 'cqu', 'AUR62043466' => 'cqu', 'BcaB02g10748' => 'bca', 'BcaB03g13231' => 'bca', 'BcaB03g14689' => 'bca', 'BcaB05g22716' => 'bca', 'BcaB06g28172' => 'bca', 'BcaB08g36413' => 'bca', 'BcaC01g02186' => 'bca', 'BcaC01g04272' => 'bca', 'BcaC02g08080' => 'bca', 'BcaC02g08227' => 'bca', 'BcaC03g13901' => 'bca', 'BcaC04g19593' => 'bca', 'BcaC04g20874' => 'bca', 'BcaC05g29557' => 'bca', 'BcaC06g35505' => 'bca', 'BcaC07g41954' => 'bca', 'BcaC07g41955' => 'bca', 'BcaC07g41956' => 'bca', 'BcaC07g42519' => 'bca', 'BcaC07g42520' => 'bca', 'BcaC07g42523' => 'bca', 'BcaC07g42524' => 'bca', 'BcaC07g42525' => 'bca', 'BcaC08g47480' => 'bca', 'BcaC08g47481' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00530' => 'bna', 'BolC2t07178H' => 'bol', 'BolC3t16567H' => 'bol', 'BolC4t27234H' => 'bol', 'BolC5t29728H' => 'bol', 'BolC5t34622H' => 'bol', 'BolC6t40321H' => 'bol', 'BolC7t42028H' => 'bol', 'BolC8t49125H' => 'bol', 'BolC8t52538H' => 'bol', 'BolC8t52539H' => 'bol', 'BolC9t56681H' => 'bol', 'BolC9t58266H' => 'bol', 'BolSC21t60294H' => 'bol', 'BraA02t05670Z' => 'bra', 'BraA03t12716Z' => 'bra', 'BraA04t17685Z' => 'bra', 'BraA05t22788Z' => 'bra', 'BraA06t24032Z' => 'bra', 'BraA06t25625Z' => 'bra', 'BraA07t27930Z' => 'bra', 'BraA08t35242Z' => 'bra', 'BraA09t38609Z' => 'bra', 'BraA10t43905Z' => 'bra', 'C02p11060' => 'bna', 'C03p42990' => 'bna', 'C03p67310' => 'bna', 'C04p56990' => 'bna', 'C04p58660' => 'bna', 'C05p09890' => 'bna', 'C05p59680' => 'bna', 'C06p19830' => 'bna', 'C06p53040' => 'bna', 'C07p15230' => 'bna', 'C08p50070' => 'bna', 'C08p50090' => 'bna', 'C09p38330' => 'bna', 'C09p53940' => 'bna', 'CAN.G1014.1' => 'can', 'CAN.G644.30' => 'can', 'CAN.G84.47' => 'can', 'CAN.G919.8' => 'can', 'CANSAT54G0113' => 'cansat', 'CANSAT54G1286' => 'cansat', 'CANSAT64G1020' => 'cansat', 'CARHR008080' => 'chi', 'CARHR008090' => 'chi', 'CARHR012130' => 'chi', 'CARHR038390' => 'chi', 'CARHR082330' => 'chi', 'CARHR120520' => 'chi', 'CARHR151470' => 'chi', 'CARHR190950' => 'chi', 'Carub.0001s0760' => 'cru', 'Carub.0001s1146' => 'cru', 'Carub.0003s0721' => 'cru', 'Carub.0004s0858' => 'cru', 'Carub.0005s1040' => 'cru', 'Carub.0006s2035' => 'cru', 'Carub.0015s0005' => 'cru', 'Ca_01607_v3' => 'car', 'Ca_01677_v3' => 'car', 'Ca_06087_v3' => 'car', 'Ca_19238_v3' => 'car', 'Ca_19373_v3' => 'car', 'Ca_21079_v3' => 'car', 'CBR_g54016' => 'cbr', 'CBR_g54018' => 'cbr', 'CBR_g54020' => 'cbr', 'Cc01_g09780' => 'ccan', 'Cc01_g11680' => 'ccan', 'Cc02_g15610' => 'ccan', 'Cc05_g04350' => 'ccan', 'Cc09_g01580' => 'ccan', 'CDE01G0795' => 'cde', 'CDE02G2024' => 'cde', 'CDE02G2260' => 'cde', 'CDE02G4561' => 'cde', 'CDE05G2733' => 'cde', 'CDE05G3422' => 'cde', 'CDE06G2003' => 'cde', 'CDE08G0576' => 'cde', 'CDE09G0048' => 'cde', 'CDE11G0805' => 'cde', 'Cfa003644' => 'cfa', 'Cfa006290' => 'cfa', 'Cfa010080' => 'cfa', 'Cfa011376' => 'cfa', 'Cfa011576' => 'cfa', 'Cfa011577' => 'cfa', 'Cfa014389' => 'cfa', 'Ciclev10006044m.g' => 'ccl', 'Ciclev10006954m.g' => 'ccl', 'Ciclev10015131m.g' => 'ccl', 'Ciclev10015580m.g' => 'ccl', 'Ciclev10028359m.g' => 'ccl', 'Ciclev10028573m.g' => 'ccl', 'CiPaw.03G159300' => 'cil', 'CiPaw.04G115100' => 'cil', 'CiPaw.09G092800' => 'cil', 'CiPaw.10G071800' => 'cil', 'CiPaw.13G105800' => 'cil', 'CiPaw.13G141000' => 'cil', 'CiPaw.14G103400' => 'cil', 'ClCG01G012700' => 'cla', 'ClCG01G012720' => 'cla', 'ClCG01G021920' => 'cla', 'ClCG02G008870' => 'cla', 'ClCG02G020840' => 'cla', 'ClCG02G021930' => 'cla', 'COL.COLO4_19302' => 'col', 'COL.COLO4_25262' => 'col', 'COL.COLO4_31788' => 'col', 'Cpa.g.c34684' => 'cpa', 'Cpa.g.c36520.1' => 'cpa', 'Cpa.g.c45626' => 'cpa', 'Cpa.g.sc121.17' => 'cpa', 'Cpa.g.sc13.22' => 'cpa', 'Cpa.g.sc87.88' => 'cpa', 'Cre06.g261800' => 'cre', 'CsaV3_1G014500' => 'csa', 'CsaV3_1G014510' => 'csa', 'CsaV3_2G034880' => 'csa', 'CsaV3_6G014760' => 'csa', 'CsaV3_6G021500' => 'csa', 'CsaV3_6G048980' => 'csa', 'CSS0002511' => 'camsi', 'CSS0007556' => 'camsi', 'CSS0008532' => 'camsi', 'CSS0009709' => 'camsi', 'CSS0010486' => 'camsi', 'CSS0016768' => 'camsi', 'CSS0023512' => 'camsi', 'CSS0025341' => 'camsi', 'CSS0027999' => 'camsi', 'CSS0028944' => 'camsi', 'CSS0032292' => 'camsi', 'CSS0032464' => 'camsi', 'CSS0037153' => 'camsi', 'CSS0039256' => 'camsi', 'CSS0048392' => 'camsi', 'CSS0050458' => 'camsi', 'DCAR_004224' => 'dca', 'DCAR_006147' => 'dca', 'DCAR_006465' => 'dca', 'DCAR_008159' => 'dca', 'DCAR_012164' => 'dca', 'DCAR_019764' => 'dca', 'Dinv05418' => 'din', 'Dinv10839' => 'din', 'Dinv12521' => 'din', 'Dinv13900' => 'din', 'Dinv29426' => 'din', 'Duzib150G0263' => 'dzi', 'Duzib168G1178' => 'dzi', 'Duzib168G1924' => 'dzi', 'Duzib170G0299' => 'dzi', 'Duzib170G0813' => 'dzi', 'Duzib235G1128' => 'dzi', 'Duzib248G1060' => 'dzi', 'ECA232G1910' => 'eca', 'ECA233G4621' => 'eca', 'ECA238G1216' => 'eca', 'ECA238G1784' => 'eca', 'ECA248G1242' => 'eca', 'EL10Ac8g20071' => 'bvu', 'EL10Ac9g21086' => 'bvu', 'EL10Ac9g22407' => 'bvu', 'EL10Ac9g22412' => 'bvu', 'Eucgr.A01119' => 'egr', 'Eucgr.E04043' => 'egr', 'Eucgr.J00428' => 'egr', 'Eucgr.J00958' => 'egr', 'FAN11G3091' => 'fan', 'FAN11G3651' => 'fan', 'FAN16G2566' => 'fan', 'FAN21G3155' => 'fan', 'FAN21G3400' => 'fan', 'FAN21G3543' => 'fan', 'FAN25G0234' => 'fan', 'FAN25G1422' => 'fan', 'FAN25G3392' => 'fan', 'FvH4_3g01940' => 'fve', 'FvH4_3g29870' => 'fve', 'FvH4_3g33680' => 'fve', 'Glyma.09G004200' => 'gma', 'Glyma.11G151288' => 'gma', 'Glyma.11G189100' => 'gma', 'Glyma.12G072500' => 'gma', 'Glyma.12G085500' => 'gma', 'Glyma.12G181800' => 'gma', 'Glyma.12G193000' => 'gma', 'Glyma.13G309300' => 'gma', 'Glyma.13G319000' => 'gma', 'Glyma.17G012600' => 'gma', 'Gohir.A06G148600' => 'ghi', 'Gohir.A07G115800' => 'ghi', 'Gohir.A08G003600' => 'ghi', 'Gohir.A09G093300' => 'ghi', 'Gohir.A09G105400' => 'ghi', 'Gohir.A09G105500' => 'ghi', 'Gohir.D06G154600' => 'ghi', 'Gohir.D07G120200' => 'ghi', 'Gohir.D08G013900' => 'ghi', 'Gohir.D09G093100' => 'ghi', 'Gohir.D09G102200' => 'ghi', 'Gohir.D09G102300' => 'ghi', 'Gorai.001G129400' => 'gra', 'Gorai.004G008200' => 'gra', 'Gorai.006G109800' => 'gra', 'Gorai.006G119500' => 'gra', 'Gorai.006G121300' => 'gra', 'Gorai.010G180700' => 'gra', 'GSVIVG01012716001' => 'vvi', 'GSVIVG01025118001' => 'vvi', 'GSVIVG01030439001' => 'vvi', 'GSVIVG01031397001' => 'vvi', 'HanXRQChr01g0004201' => 'han', 'HanXRQChr02g0054941' => 'han', 'HanXRQChr05g0141811' => 'han', 'HanXRQChr07g0197751' => 'han', 'HanXRQChr11g0346691' => 'han', 'HanXRQChr13g0396971' => 'han', 'HanXRQChr14g0432951' => 'han', 'HanXRQChr14g0452001' => 'han', 'HanXRQChr15g0496681' => 'han', 'HanXRQChr17g0557491' => 'han', 'HanXRQChr17g0557501' => 'han', 'Haze_06809' => 'cav', 'Haze_12852' => 'cav', 'Haze_15850' => 'cav', 'Haze_23446' => 'cav', 'Haze_23942' => 'cav', 'Haze_23943' => 'cav', 'Hma1.2p1_0091F.1_g046450' => 'hma', 'Hma1.2p1_0128F.1_g059910' => 'hma', 'Hma1.2p1_0249F.1_g102260' => 'hma', 'Hma1.2p1_0453F.1_g156190' => 'hma', 'Hma1.2p1_0695F.1_g204380' => 'hma', 'Hma1.2p1_0749F.1_g212650' => 'hma', 'Hma1.2p1_2156F.1_g315420' => 'hma', 'Hma1.2p1_2686F.1_g326940' => 'hma', 'HPP92_006428' => 'vpl', 'HPP92_012069' => 'vpl', 'HPP92_014129' => 'vpl', 'HPP92_014133' => 'vpl', 'HPP92_017315' => 'vpl', 'HPP92_026445' => 'vpl', 'HPP92_026446' => 'vpl', 'Hund00774' => 'sun', 'Hund07682' => 'sun', 'Hund21413' => 'sun', 'Hund23462' => 'sun', 'Hund23463' => 'sun', 'Lalb_Chr03g0027911' => 'lal', 'Lalb_Chr13g0304271' => 'lal', 'Lalb_Chr19g0137471' => 'lal', 'Lalb_Chr22g0350651' => 'lal', 'Lalb_Chr24g0395151' => 'lal', 'Lj1A1231T40' => 'lonja', 'Lj1A221T48' => 'lonja', 'Lj1C924T12' => 'lonja', 'Lj2C993G6' => 'lonja', 'Lj3g0005790' => 'lja', 'Lj3g0015432' => 'lja', 'Lj3g0017722' => 'lja', 'Lj3g0018497' => 'lja', 'Lj4g0025071' => 'lja', 'Lsat_1_v5_gn_1_129680' => 'lsa', 'Lsat_1_v5_gn_2_25321' => 'lsa', 'Lsat_1_v5_gn_2_95461' => 'lsa', 'Lsat_1_v5_gn_4_159620' => 'lsa', 'Lsat_1_v5_gn_6_41301' => 'lsa', 'Lsat_1_v5_gn_6_74660' => 'lsa', 'Lsat_1_v5_gn_7_11520' => 'lsa', 'Lsat_1_v5_gn_9_67680' => 'lsa', 'Manes.04G008300' => 'mes', 'Manes.04G008400' => 'mes', 'Manes.04G026500' => 'mes', 'Manes.10G135300' => 'mes', 'Manes.11G157300' => 'mes', 'Manes.12G074000' => 'mes', 'Manes.16G006200' => 'mes', 'Manes.17G026400' => 'mes', 'Mapoly0024s0086' => 'mpo', 'Mapoly0024s0087' => 'mpo', 'Mapoly0071s0057' => 'mpo', 'Mapoly0204s0012' => 'mpo', 'MBI04_g37681_MAGBIO' => 'mbi', 'MBI05_g17779_MAGBIO' => 'mbi', 'MBI12_g31184_MAGBIO' => 'mbi', 'MBI17_g11083_MAGBIO' => 'mbi', 'MBI18_g03883_MAGBIO' => 'mbi', 'MBI18_g28940_MAGBIO' => 'mbi', 'MCO01G690' => 'mco', 'MD03G1109900' => 'mdo', 'MD03G1134800' => 'mdo', 'MD05G1348000' => 'mdo', 'MD10G1322400' => 'mdo', 'MD11G1123300' => 'mdo', 'MD11G1157600' => 'mdo', 'Medtr2g084875' => 'mtr', 'Medtr2g088130' => 'mtr', 'Medtr4g055310' => 'mtr', 'Medtr4g061070' => 'mtr', 'Medtr4g132250' => 'mtr', 'MELO3C004795.2' => 'cme', 'MELO3C004797.2' => 'cme', 'MELO3C007396.2' => 'cme', 'MELO3C019277.2' => 'cme', 'MELO3C021449.2' => 'cme', 'MELO3C025736.2' => 'cme', 'Migut.D02175' => 'egut', 'Migut.H01573' => 'egut', 'Migut.M01327' => 'egut', 'Migut.N02513' => 'egut', 'MSTRG.14638' => 'ama', 'MSTRG.18632' => 'ama', 'MSTRG.7203' => 'ama', 'Nitab4.5_0000533g0140' => 'nta', 'Nitab4.5_0000888g0150' => 'nta', 'Nitab4.5_0001453g0040' => 'nta', 'Nitab4.5_0002827g0090' => 'nta', 'Nitab4.5_0003082g0040' => 'nta', 'Nitab4.5_0007799g0040' => 'nta', 'Nitab4.5_0008983g0010' => 'nta', 'Nitab4.5_0009017g0020' => 'nta', 'Nn1g02132' => 'nnu', 'Nn1g03492' => 'nnu', 'Nn1g03493' => 'nnu', 'Nn1g03494' => 'nnu', 'Nn1g07164' => 'nnu', 'Nn1g07291' => 'nnu', 'Nn2g10655' => 'nnu', 'Nn2g11652' => 'nnu', 'Nn2g14008' => 'nnu', 'Nn3g17476' => 'nnu', 'Nn3g17477' => 'nnu', 'Nn4g22370' => 'nnu', 'Nn4g25255' => 'nnu', 'Nn5g27755' => 'nnu', 'Nn6g34260' => 'nnu', 'Nn6g35041' => 'nnu', 'Oeu005924.1' => 'oeu', 'Oeu008383.1' => 'oeu', 'Oeu014928.1' => 'oeu', 'Oeu019889.1' => 'oeu', 'Oeu022271.1' => 'oeu', 'Oeu025271.1' => 'oeu', 'Oeu036302.1' => 'oeu', 'Oeu044100.1' => 'oeu', 'Os01g0528300' => 'osa', 'Os03g0286200' => 'osa', 'Os04g0406600' => 'osa', 'Os07g0512000' => 'osa', 'Os07g0694600' => 'osa', 'Os08g0411000' => 'osa', 'Os09g0565700' => 'osa', 'Os09g0566050' => 'osa', 'Os10g0523700' => 'osa', 'Peaxi162Scf00002g00514' => 'pax', 'Peaxi162Scf00047g01817' => 'pax', 'Peaxi162Scf00114g00001' => 'pax', 'Peaxi162Scf00147g00613' => 'pax', 'Peaxi162Scf00389g00425' => 'pax', 'PGR042G1139' => 'pgr', 'PGR042G3273' => 'pgr', 'PGR102G2180' => 'pgr', 'PGR119G0234' => 'pgr', 'PGR119G0668' => 'pgr', 'PGSC0003DMG400007122' => 'stu', 'PGSC0003DMG400016478' => 'stu', 'PGSC0003DMG400025374' => 'stu', 'PGSC0003DMG400026536' => 'stu', 'Phvul.003G079600' => 'pvu', 'Phvul.005G115600' => 'pvu', 'Phvul.005G127100' => 'pvu', 'Phvul.006G149500' => 'pvu', 'Phvul.006G149600' => 'pvu', 'Phvul.011G071800' => 'pvu', 'Phvul.011G090400' => 'pvu', 'Potri.004G013400' => 'ptr', 'Potri.004G188100' => 'ptr', 'Potri.008G195500' => 'ptr', 'Potri.009G148800' => 'ptr', 'Potri.011G004700' => 'ptr', 'Pp3c17_22810' => 'ppa', 'Pp3c18_4480' => 'ppa', 'Pp3c19_13030' => 'ppa', 'Pp3c1_33620' => 'ppa', 'Pp3c2_9380' => 'ppa', 'PRCOL_00001023' => 'pco', 'Prupe.3G216300' => 'ppe', 'Prupe.4G019500' => 'ppe', 'Prupe.6G092500' => 'ppe', 'Prupe.6G119200' => 'ppe', 'Psat0s1945g0080' => 'psa', 'Psat0s4167g0040' => 'psa', 'Psat1g185800' => 'psa', 'Psat4g006440' => 'psa', 'Psat4g006480' => 'psa', 'Psat4g168120' => 'psa', 'Psat5g255680' => 'psa', 'Psat5g261760' => 'psa', 'Psat7g222120' => 'psa', 'PSO063G7252' => 'pso', 'PSO170G4778' => 'pso', 'PSO210G2249' => 'pso', 'PSO339G2411' => 'pso', 'PSO339G2457' => 'pso', 'PSO339G2854' => 'pso', 'PSO339G4288' => 'pso', 'PSO339G4615' => 'pso', 'PSO384G2796' => 'pso', 'PSO384G2940' => 'pso', 'PSO384G4227' => 'pso', 'PSO478G1425' => 'pso', 'PSO541G3863' => 'pso', 'PSO675G0507' => 'pso', 'PSO782G0338' => 'pso', 'PSO832G0644' => 'pso', 'QL01p013664' => 'qlo', 'QL01p036598' => 'qlo', 'QL05p072984' => 'qlo', 'QL08p005768' => 'qlo', 'QL08p032743' => 'qlo', 'QL93p0073_0439' => 'qlo', 'QL93p0073_0444' => 'qlo', 'RcHm_v2.0_Chr5g0002851' => 'rch', 'RcHm_v2.0_Chr5g0055201' => 'rch', 'RcHm_v2.0_Chr5g0061191' => 'rch', 'RcHm_v2.0_Chr7g0203231' => 'rch', 'Rhsim01G0208100' => 'rsi', 'Rhsim01G0208200' => 'rsi', 'Rhsim02G0106500' => 'rsi', 'Rhsim03G0107900' => 'rsi', 'Rhsim06G0163400' => 'rsi', 'Rhsim13G0105200' => 'rsi', 'Sabra04G0006300' => 'sbr', 'Sabra04G0127000' => 'sbr', 'Sabra08G0148700' => 'sbr', 'Sabra09G0117400' => 'sbr', 'SalBow1G3326' => 'sbo', 'SalBow3G3228' => 'sbo', 'SalBow6G1634' => 'sbo', 'SalBow6G3603' => 'sbo', 'SalBow6G5266' => 'sbo', 'SalBow7G2265' => 'sbo', 'SalBow8G0850' => 'sbo', 'SalBow8G2592' => 'sbo', 'Sc05g0009240' => 'sci', 'Sc12g0002300' => 'sci', 'Sc21g0000100' => 'sci', 'Sc21g0004720' => 'sci', 'Sed0002949' => 'sed', 'Sed0004114' => 'sed', 'Sed0004306' => 'sed', 'Sed0006172' => 'sed', 'Sed0008413' => 'sed', 'Sed0013809' => 'sed', 'Sed0019556' => 'sed', 'SEGI_03570' => 'sgi', 'SEGI_07859' => 'sgi', 'SEGI_15042' => 'sgi', 'SEGI_16263' => 'sgi', 'SEGI_16552' => 'sgi', 'SEGI_24331' => 'sgi', 'SEGI_27316' => 'sgi', 'SEGI_29521' => 'sgi', 'SEGI_41342' => 'sgi', 'SGA_v2.0_scaffold27G11617' => 'sas', 'SGA_v2.0_scaffold316G48428' => 'sas', 'SGA_v2.0_scaffold49G18261' => 'sas', 'SGA_v2.0_scaffold7G03831' => 'sas', 'SGA_v2.0_scaffold93G28359' => 'sas', 'SHI02210' => 'shi', 'SHI06028' => 'shi', 'SHI06321' => 'shi', 'SMO111G0012' => 'smo', 'SMO228G0080' => 'smo', 'SMO356G0756' => 'smo', 'Solyc02g080620.3' => 'sly', 'Solyc06g074530.1' => 'sly', 'Solyc11g066890.1' => 'sly', 'Solyc11g072520.3' => 'sly', 'Sopen02g025330' => 'spe', 'Sopen06g031000' => 'spe', 'Sopen09g008240' => 'spe', 'Sopen09g025210' => 'spe', 'Sopen11g026600' => 'spe', 'Sopen11g030170' => 'spe', 'Sp1g10420' => 'spa', 'Sp3g06570' => 'spa', 'Sp4g10660' => 'spa', 'Sp5g16460' => 'spa', 'Sp6g22710' => 'spa', 'TAR365G0112' => 'tar', 'TAR369G0717' => 'tar', 'TAR374G0976' => 'tar', 'TAR623G1128' => 'tar', 'TAR626G1937' => 'tar', 'TAR627G0123' => 'tar', 'TAR628G0305' => 'tar', 'TAR636G1176' => 'tar', 'TAR636G2442' => 'tar', 'THA.LOC104800556' => 'tha', 'THA.LOC104809501' => 'tha', 'THA.LOC104815126' => 'tha', 'THA.LOC104815732' => 'tha', 'THA.LOC104823528' => 'tha', 'Thecc.02G365600' => 'tca', 'Thecc.06G222300' => 'tca', 'Thecc.09G261800' => 'tca', 'Thecc.09G291400' => 'tca', 'Thhalv10003028m.g' => 'esa', 'Thhalv10007886m.g' => 'esa', 'Thhalv10016085m.g' => 'esa', 'Thhalv10016681m.g' => 'esa', 'Thhalv10020951m.g' => 'esa', 'TPR.G15598' => 'tpr', 'TPR.G29305' => 'tpr', 'TPR.G32395' => 'tpr', 'TPR.G36998' => 'tpr', 'TPR.G4227' => 'tpr', 'TWI18G1433' => 'twi', 'TWI31G0755' => 'twi', 'TWI38G0912' => 'twi', 'TWI75G1097' => 'twi', 'TWI75G1619' => 'twi', 'TWI79G1336' => 'twi', 'unitig_0.g943' => 'ugi', 'unitig_0.g944' => 'ugi', 'unitig_22.g6646' => 'ugi', 'unitig_37.g12681' => 'ugi', 'unitig_8.g3290' => 'ugi', 'vmacro03278' => 'vma', 'vmacro12197' => 'vma', 'vmacro14478' => 'vma', 'vmacro15787' => 'vma', 'vmacro15789' => 'vma', 'vmacro15790' => 'vma', 'vmacro15806' => 'vma', 'vmacro22907' => 'vma', 'vmacro22908' => 'vma', 'vmacro22909' => 'vma', 'vmacro23108' => 'vma', 'VMungo0540G0540' => 'vmu', 'VMungo0540G2468' => 'vmu', 'VMungo1080G0390' => 'vmu', 'VMungo1080G1165' => 'vmu', 'VMungo1127G0170' => 'vmu', 'VMungo1127G2099' => 'vmu', 'VMungo1215G3013' => 'vmu', 'Zm00001eb013110' => 'zma', 'Zm00001eb084260' => 'zma', 'Zm00001eb096110' => 'zma', 'Zm00001eb217510' => 'zma', 'Zm00001eb322550' => 'zma', 'Zm00001eb390770' => 'zma', 'Zm00001eb397170' => 'zma', 'Zm00001eb404610' => 'zma', 'Zm00001eb421790' => 'zma' ), 'gf_id' => 'HOM05D000911', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000911' ), 'data_identifier' => 'HOM05D000911', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000911', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27780' => 'bna', 'A03p35380' => 'bna', 'A04p21160' => 'bna', 'A05p40570' => 'bna', 'A06p26900' => 'bna', 'A08p33230' => 'bna', 'A09p65960' => 'bna', 'A10p18290' => 'bna', 'Aa31LG1G12990' => 'aar', 'Aa31LG1G2980' => 'aar', 'Aa31LG4G14320' => 'aar', 'Aa31LG7G11800' => 'aar', 'Aa31sc36G50' => 'aar', 'Aa31sc36G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3721' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5459' => 'aag', 'Actinidia03028' => 'ach', 'Actinidia03753' => 'ach', 'Actinidia04187' => 'ach', 'Actinidia05509' => 'ach', 'Actinidia24180' => 'ach', 'Actinidia26906' => 'ach', 'Actinidia37097' => 'ach', 'Actinidia38249' => 'ach', 'Ah.01g003470' => 'amhyb', 'Ah.01g004580' => 'amhyb', 'Ah.01g014850' => 'amhyb', 'Ah.01g016830' => 'amhyb', 'Ah.14g088000' => 'amhyb', 'AL1G22980' => 'aly', 'AL3G18990' => 'aly', 'AL4G22440' => 'aly', 'AL4G33180' => 'aly', 'AL5G22920' => 'aly', 'AL6G33660' => 'aly', 'AL8G20720' => 'aly', 'Aqoxy1G00935' => 'aox', 'Aqoxy1G02094' => 'aox', 'Aqoxy2G01239' => 'aox', 'Aqoxy4G01870' => 'aox', 'Aqoxy7G00450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.36ZVTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71EM27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5D6C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH3WRE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3NCM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RIM768' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YB5YRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z36GDV' => 'arhy', 'AT1G08250' => 'ath', 'AT1G11790' => 'ath', 'AT2G27820' => 'ath', 'AT3G07630' => 'ath', 'AT3G44720' => 'ath', 'AT5G22630' => 'ath', 'ATR0693G304' => 'atr', 'ATR0794G109' => 'atr', 'ATR0820G120' => 'atr', 'ATR1159G064' => 'atr', 'Atru.chr10.2239' => 'acertr', 'Atru.chr3.3371' => 'acertr', 'Atru.chr6.3202' => 'acertr', 'AUR62006499' => 'cqu', 'AUR62012718' => 'cqu', 'AUR62021938' => 'cqu', 'AUR62023932' => 'cqu', 'AUR62025034' => 'cqu', 'AUR62025035' => 'cqu', 'AUR62038307' => 'cqu', 'AUR62043466' => 'cqu', 'BcaB02g10748' => 'bca', 'BcaB03g13231' => 'bca', 'BcaB03g14689' => 'bca', 'BcaB05g22716' => 'bca', 'BcaB06g28172' => 'bca', 'BcaB08g36413' => 'bca', 'BcaC01g02186' => 'bca', 'BcaC01g04272' => 'bca', 'BcaC02g08080' => 'bca', 'BcaC02g08227' => 'bca', 'BcaC03g13901' => 'bca', 'BcaC04g19593' => 'bca', 'BcaC04g20874' => 'bca', 'BcaC05g29557' => 'bca', 'BcaC06g35505' => 'bca', 'BcaC07g41954' => 'bca', 'BcaC07g41955' => 'bca', 'BcaC07g41956' => 'bca', 'BcaC07g42519' => 'bca', 'BcaC07g42520' => 'bca', 'BcaC07g42523' => 'bca', 'BcaC07g42524' => 'bca', 'BcaC07g42525' => 'bca', 'BcaC08g47480' => 'bca', 'BcaC08g47481' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00530' => 'bna', 'BolC2t07178H' => 'bol', 'BolC3t16567H' => 'bol', 'BolC4t27234H' => 'bol', 'BolC5t29728H' => 'bol', 'BolC5t34622H' => 'bol', 'BolC6t40321H' => 'bol', 'BolC7t42028H' => 'bol', 'BolC8t49125H' => 'bol', 'BolC8t52538H' => 'bol', 'BolC8t52539H' => 'bol', 'BolC9t56681H' => 'bol', 'BolC9t58266H' => 'bol', 'BolSC21t60294H' => 'bol', 'BraA02t05670Z' => 'bra', 'BraA03t12716Z' => 'bra', 'BraA04t17685Z' => 'bra', 'BraA05t22788Z' => 'bra', 'BraA06t24032Z' => 'bra', 'BraA06t25625Z' => 'bra', 'BraA07t27930Z' => 'bra', 'BraA08t35242Z' => 'bra', 'BraA09t38609Z' => 'bra', 'BraA10t43905Z' => 'bra', 'C02p11060' => 'bna', 'C03p42990' => 'bna', 'C03p67310' => 'bna', 'C04p56990' => 'bna', 'C04p58660' => 'bna', 'C05p09890' => 'bna', 'C05p59680' => 'bna', 'C06p19830' => 'bna', 'C06p53040' => 'bna', 'C07p15230' => 'bna', 'C08p50070' => 'bna', 'C08p50090' => 'bna', 'C09p38330' => 'bna', 'C09p53940' => 'bna', 'CAN.G1014.1' => 'can', 'CAN.G644.30' => 'can', 'CAN.G84.47' => 'can', 'CAN.G919.8' => 'can', 'CANSAT54G0113' => 'cansat', 'CANSAT54G1286' => 'cansat', 'CANSAT64G1020' => 'cansat', 'CARHR008080' => 'chi', 'CARHR008090' => 'chi', 'CARHR012130' => 'chi', 'CARHR038390' => 'chi', 'CARHR082330' => 'chi', 'CARHR120520' => 'chi', 'CARHR151470' => 'chi', 'CARHR190950' => 'chi', 'Carub.0001s0760' => 'cru', 'Carub.0001s1146' => 'cru', 'Carub.0003s0721' => 'cru', 'Carub.0004s0858' => 'cru', 'Carub.0005s1040' => 'cru', 'Carub.0006s2035' => 'cru', 'Carub.0015s0005' => 'cru', 'Ca_01607_v3' => 'car', 'Ca_01677_v3' => 'car', 'Ca_06087_v3' => 'car', 'Ca_19238_v3' => 'car', 'Ca_19373_v3' => 'car', 'Ca_21079_v3' => 'car', 'CBR_g54016' => 'cbr', 'CBR_g54018' => 'cbr', 'CBR_g54020' => 'cbr', 'Cc01_g09780' => 'ccan', 'Cc01_g11680' => 'ccan', 'Cc02_g15610' => 'ccan', 'Cc05_g04350' => 'ccan', 'Cc09_g01580' => 'ccan', 'CDE01G0795' => 'cde', 'CDE02G2024' => 'cde', 'CDE02G2260' => 'cde', 'CDE02G4561' => 'cde', 'CDE05G2733' => 'cde', 'CDE05G3422' => 'cde', 'CDE06G2003' => 'cde', 'CDE08G0576' => 'cde', 'CDE09G0048' => 'cde', 'CDE11G0805' => 'cde', 'Cfa003644' => 'cfa', 'Cfa006290' => 'cfa', 'Cfa010080' => 'cfa', 'Cfa011376' => 'cfa', 'Cfa011576' => 'cfa', 'Cfa011577' => 'cfa', 'Cfa014389' => 'cfa', 'Ciclev10006044m.g' => 'ccl', 'Ciclev10006954m.g' => 'ccl', 'Ciclev10015131m.g' => 'ccl', 'Ciclev10015580m.g' => 'ccl', 'Ciclev10028359m.g' => 'ccl', 'Ciclev10028573m.g' => 'ccl', 'CiPaw.03G159300' => 'cil', 'CiPaw.04G115100' => 'cil', 'CiPaw.09G092800' => 'cil', 'CiPaw.10G071800' => 'cil', 'CiPaw.13G105800' => 'cil', 'CiPaw.13G141000' => 'cil', 'CiPaw.14G103400' => 'cil', 'ClCG01G012700' => 'cla', 'ClCG01G012720' => 'cla', 'ClCG01G021920' => 'cla', 'ClCG02G008870' => 'cla', 'ClCG02G020840' => 'cla', 'ClCG02G021930' => 'cla', 'COL.COLO4_19302' => 'col', 'COL.COLO4_25262' => 'col', 'COL.COLO4_31788' => 'col', 'Cpa.g.c34684' => 'cpa', 'Cpa.g.c36520.1' => 'cpa', 'Cpa.g.c45626' => 'cpa', 'Cpa.g.sc121.17' => 'cpa', 'Cpa.g.sc13.22' => 'cpa', 'Cpa.g.sc87.88' => 'cpa', 'Cre06.g261800' => 'cre', 'CsaV3_1G014500' => 'csa', 'CsaV3_1G014510' => 'csa', 'CsaV3_2G034880' => 'csa', 'CsaV3_6G014760' => 'csa', 'CsaV3_6G021500' => 'csa', 'CsaV3_6G048980' => 'csa', 'CSS0002511' => 'camsi', 'CSS0007556' => 'camsi', 'CSS0008532' => 'camsi', 'CSS0009709' => 'camsi', 'CSS0010486' => 'camsi', 'CSS0016768' => 'camsi', 'CSS0023512' => 'camsi', 'CSS0025341' => 'camsi', 'CSS0027999' => 'camsi', 'CSS0028944' => 'camsi', 'CSS0032292' => 'camsi', 'CSS0032464' => 'camsi', 'CSS0037153' => 'camsi', 'CSS0039256' => 'camsi', 'CSS0048392' => 'camsi', 'CSS0050458' => 'camsi', 'DCAR_004224' => 'dca', 'DCAR_006147' => 'dca', 'DCAR_006465' => 'dca', 'DCAR_008159' => 'dca', 'DCAR_012164' => 'dca', 'DCAR_019764' => 'dca', 'Dinv05418' => 'din', 'Dinv10839' => 'din', 'Dinv12521' => 'din', 'Dinv13900' => 'din', 'Dinv29426' => 'din', 'Duzib150G0263' => 'dzi', 'Duzib168G1178' => 'dzi', 'Duzib168G1924' => 'dzi', 'Duzib170G0299' => 'dzi', 'Duzib170G0813' => 'dzi', 'Duzib235G1128' => 'dzi', 'Duzib248G1060' => 'dzi', 'ECA232G1910' => 'eca', 'ECA233G4621' => 'eca', 'ECA238G1216' => 'eca', 'ECA238G1784' => 'eca', 'ECA248G1242' => 'eca', 'EL10Ac8g20071' => 'bvu', 'EL10Ac9g21086' => 'bvu', 'EL10Ac9g22407' => 'bvu', 'EL10Ac9g22412' => 'bvu', 'Eucgr.A01119' => 'egr', 'Eucgr.E04043' => 'egr', 'Eucgr.J00428' => 'egr', 'Eucgr.J00958' => 'egr', 'FAN11G3091' => 'fan', 'FAN11G3651' => 'fan', 'FAN16G2566' => 'fan', 'FAN21G3155' => 'fan', 'FAN21G3400' => 'fan', 'FAN21G3543' => 'fan', 'FAN25G0234' => 'fan', 'FAN25G1422' => 'fan', 'FAN25G3392' => 'fan', 'FvH4_3g01940' => 'fve', 'FvH4_3g29870' => 'fve', 'FvH4_3g33680' => 'fve', 'Glyma.09G004200' => 'gma', 'Glyma.11G151288' => 'gma', 'Glyma.11G189100' => 'gma', 'Glyma.12G072500' => 'gma', 'Glyma.12G085500' => 'gma', 'Glyma.12G181800' => 'gma', 'Glyma.12G193000' => 'gma', 'Glyma.13G309300' => 'gma', 'Glyma.13G319000' => 'gma', 'Glyma.17G012600' => 'gma', 'Gohir.A06G148600' => 'ghi', 'Gohir.A07G115800' => 'ghi', 'Gohir.A08G003600' => 'ghi', 'Gohir.A09G093300' => 'ghi', 'Gohir.A09G105400' => 'ghi', 'Gohir.A09G105500' => 'ghi', 'Gohir.D06G154600' => 'ghi', 'Gohir.D07G120200' => 'ghi', 'Gohir.D08G013900' => 'ghi', 'Gohir.D09G093100' => 'ghi', 'Gohir.D09G102200' => 'ghi', 'Gohir.D09G102300' => 'ghi', 'Gorai.001G129400' => 'gra', 'Gorai.004G008200' => 'gra', 'Gorai.006G109800' => 'gra', 'Gorai.006G119500' => 'gra', 'Gorai.006G121300' => 'gra', 'Gorai.010G180700' => 'gra', 'GSVIVG01012716001' => 'vvi', 'GSVIVG01025118001' => 'vvi', 'GSVIVG01030439001' => 'vvi', 'GSVIVG01031397001' => 'vvi', 'HanXRQChr01g0004201' => 'han', 'HanXRQChr02g0054941' => 'han', 'HanXRQChr05g0141811' => 'han', 'HanXRQChr07g0197751' => 'han', 'HanXRQChr11g0346691' => 'han', 'HanXRQChr13g0396971' => 'han', 'HanXRQChr14g0432951' => 'han', 'HanXRQChr14g0452001' => 'han', 'HanXRQChr15g0496681' => 'han', 'HanXRQChr17g0557491' => 'han', 'HanXRQChr17g0557501' => 'han', 'Haze_06809' => 'cav', 'Haze_12852' => 'cav', 'Haze_15850' => 'cav', 'Haze_23446' => 'cav', 'Haze_23942' => 'cav', 'Haze_23943' => 'cav', 'Hma1.2p1_0091F.1_g046450' => 'hma', 'Hma1.2p1_0128F.1_g059910' => 'hma', 'Hma1.2p1_0249F.1_g102260' => 'hma', 'Hma1.2p1_0453F.1_g156190' => 'hma', 'Hma1.2p1_0695F.1_g204380' => 'hma', 'Hma1.2p1_0749F.1_g212650' => 'hma', 'Hma1.2p1_2156F.1_g315420' => 'hma', 'Hma1.2p1_2686F.1_g326940' => 'hma', 'HPP92_006428' => 'vpl', 'HPP92_012069' => 'vpl', 'HPP92_014129' => 'vpl', 'HPP92_014133' => 'vpl', 'HPP92_017315' => 'vpl', 'HPP92_026445' => 'vpl', 'HPP92_026446' => 'vpl', 'Hund00774' => 'sun', 'Hund07682' => 'sun', 'Hund21413' => 'sun', 'Hund23462' => 'sun', 'Hund23463' => 'sun', 'Lalb_Chr03g0027911' => 'lal', 'Lalb_Chr13g0304271' => 'lal', 'Lalb_Chr19g0137471' => 'lal', 'Lalb_Chr22g0350651' => 'lal', 'Lalb_Chr24g0395151' => 'lal', 'Lj1A1231T40' => 'lonja', 'Lj1A221T48' => 'lonja', 'Lj1C924T12' => 'lonja', 'Lj2C993G6' => 'lonja', 'Lj3g0005790' => 'lja', 'Lj3g0015432' => 'lja', 'Lj3g0017722' => 'lja', 'Lj3g0018497' => 'lja', 'Lj4g0025071' => 'lja', 'Lsat_1_v5_gn_1_129680' => 'lsa', 'Lsat_1_v5_gn_2_25321' => 'lsa', 'Lsat_1_v5_gn_2_95461' => 'lsa', 'Lsat_1_v5_gn_4_159620' => 'lsa', 'Lsat_1_v5_gn_6_41301' => 'lsa', 'Lsat_1_v5_gn_6_74660' => 'lsa', 'Lsat_1_v5_gn_7_11520' => 'lsa', 'Lsat_1_v5_gn_9_67680' => 'lsa', 'Manes.04G008300' => 'mes', 'Manes.04G008400' => 'mes', 'Manes.04G026500' => 'mes', 'Manes.10G135300' => 'mes', 'Manes.11G157300' => 'mes', 'Manes.12G074000' => 'mes', 'Manes.16G006200' => 'mes', 'Manes.17G026400' => 'mes', 'Mapoly0024s0086' => 'mpo', 'Mapoly0024s0087' => 'mpo', 'Mapoly0071s0057' => 'mpo', 'Mapoly0204s0012' => 'mpo', 'MBI04_g37681_MAGBIO' => 'mbi', 'MBI05_g17779_MAGBIO' => 'mbi', 'MBI12_g31184_MAGBIO' => 'mbi', 'MBI17_g11083_MAGBIO' => 'mbi', 'MBI18_g03883_MAGBIO' => 'mbi', 'MBI18_g28940_MAGBIO' => 'mbi', 'MCO01G690' => 'mco', 'MD03G1109900' => 'mdo', 'MD03G1134800' => 'mdo', 'MD05G1348000' => 'mdo', 'MD10G1322400' => 'mdo', 'MD11G1123300' => 'mdo', 'MD11G1157600' => 'mdo', 'Medtr2g084875' => 'mtr', 'Medtr2g088130' => 'mtr', 'Medtr4g055310' => 'mtr', 'Medtr4g061070' => 'mtr', 'Medtr4g132250' => 'mtr', 'MELO3C004795.2' => 'cme', 'MELO3C004797.2' => 'cme', 'MELO3C007396.2' => 'cme', 'MELO3C019277.2' => 'cme', 'MELO3C021449.2' => 'cme', 'MELO3C025736.2' => 'cme', 'Migut.D02175' => 'egut', 'Migut.H01573' => 'egut', 'Migut.M01327' => 'egut', 'Migut.N02513' => 'egut', 'MSTRG.14638' => 'ama', 'MSTRG.18632' => 'ama', 'MSTRG.7203' => 'ama', 'Nitab4.5_0000533g0140' => 'nta', 'Nitab4.5_0000888g0150' => 'nta', 'Nitab4.5_0001453g0040' => 'nta', 'Nitab4.5_0002827g0090' => 'nta', 'Nitab4.5_0003082g0040' => 'nta', 'Nitab4.5_0007799g0040' => 'nta', 'Nitab4.5_0008983g0010' => 'nta', 'Nitab4.5_0009017g0020' => 'nta', 'Nn1g02132' => 'nnu', 'Nn1g03492' => 'nnu', 'Nn1g03493' => 'nnu', 'Nn1g03494' => 'nnu', 'Nn1g07164' => 'nnu', 'Nn1g07291' => 'nnu', 'Nn2g10655' => 'nnu', 'Nn2g11652' => 'nnu', 'Nn2g14008' => 'nnu', 'Nn3g17476' => 'nnu', 'Nn3g17477' => 'nnu', 'Nn4g22370' => 'nnu', 'Nn4g25255' => 'nnu', 'Nn5g27755' => 'nnu', 'Nn6g34260' => 'nnu', 'Nn6g35041' => 'nnu', 'Oeu005924.1' => 'oeu', 'Oeu008383.1' => 'oeu', 'Oeu014928.1' => 'oeu', 'Oeu019889.1' => 'oeu', 'Oeu022271.1' => 'oeu', 'Oeu025271.1' => 'oeu', 'Oeu036302.1' => 'oeu', 'Oeu044100.1' => 'oeu', 'Os01g0528300' => 'osa', 'Os03g0286200' => 'osa', 'Os04g0406600' => 'osa', 'Os07g0512000' => 'osa', 'Os07g0694600' => 'osa', 'Os08g0411000' => 'osa', 'Os09g0565700' => 'osa', 'Os09g0566050' => 'osa', 'Os10g0523700' => 'osa', 'Peaxi162Scf00002g00514' => 'pax', 'Peaxi162Scf00047g01817' => 'pax', 'Peaxi162Scf00114g00001' => 'pax', 'Peaxi162Scf00147g00613' => 'pax', 'Peaxi162Scf00389g00425' => 'pax', 'PGR042G1139' => 'pgr', 'PGR042G3273' => 'pgr', 'PGR102G2180' => 'pgr', 'PGR119G0234' => 'pgr', 'PGR119G0668' => 'pgr', 'PGSC0003DMG400007122' => 'stu', 'PGSC0003DMG400016478' => 'stu', 'PGSC0003DMG400025374' => 'stu', 'PGSC0003DMG400026536' => 'stu', 'Phvul.003G079600' => 'pvu', 'Phvul.005G115600' => 'pvu', 'Phvul.005G127100' => 'pvu', 'Phvul.006G149500' => 'pvu', 'Phvul.006G149600' => 'pvu', 'Phvul.011G071800' => 'pvu', 'Phvul.011G090400' => 'pvu', 'Potri.004G013400' => 'ptr', 'Potri.004G188100' => 'ptr', 'Potri.008G195500' => 'ptr', 'Potri.009G148800' => 'ptr', 'Potri.011G004700' => 'ptr', 'Pp3c17_22810' => 'ppa', 'Pp3c18_4480' => 'ppa', 'Pp3c19_13030' => 'ppa', 'Pp3c1_33620' => 'ppa', 'Pp3c2_9380' => 'ppa', 'PRCOL_00001023' => 'pco', 'Prupe.3G216300' => 'ppe', 'Prupe.4G019500' => 'ppe', 'Prupe.6G092500' => 'ppe', 'Prupe.6G119200' => 'ppe', 'Psat0s1945g0080' => 'psa', 'Psat0s4167g0040' => 'psa', 'Psat1g185800' => 'psa', 'Psat4g006440' => 'psa', 'Psat4g006480' => 'psa', 'Psat4g168120' => 'psa', 'Psat5g255680' => 'psa', 'Psat5g261760' => 'psa', 'Psat7g222120' => 'psa', 'PSO063G7252' => 'pso', 'PSO170G4778' => 'pso', 'PSO210G2249' => 'pso', 'PSO339G2411' => 'pso', 'PSO339G2457' => 'pso', 'PSO339G2854' => 'pso', 'PSO339G4288' => 'pso', 'PSO339G4615' => 'pso', 'PSO384G2796' => 'pso', 'PSO384G2940' => 'pso', 'PSO384G4227' => 'pso', 'PSO478G1425' => 'pso', 'PSO541G3863' => 'pso', 'PSO675G0507' => 'pso', 'PSO782G0338' => 'pso', 'PSO832G0644' => 'pso', 'QL01p013664' => 'qlo', 'QL01p036598' => 'qlo', 'QL05p072984' => 'qlo', 'QL08p005768' => 'qlo', 'QL08p032743' => 'qlo', 'QL93p0073_0439' => 'qlo', 'QL93p0073_0444' => 'qlo', 'RcHm_v2.0_Chr5g0002851' => 'rch', 'RcHm_v2.0_Chr5g0055201' => 'rch', 'RcHm_v2.0_Chr5g0061191' => 'rch', 'RcHm_v2.0_Chr7g0203231' => 'rch', 'Rhsim01G0208100' => 'rsi', 'Rhsim01G0208200' => 'rsi', 'Rhsim02G0106500' => 'rsi', 'Rhsim03G0107900' => 'rsi', 'Rhsim06G0163400' => 'rsi', 'Rhsim13G0105200' => 'rsi', 'Sabra04G0006300' => 'sbr', 'Sabra04G0127000' => 'sbr', 'Sabra08G0148700' => 'sbr', 'Sabra09G0117400' => 'sbr', 'SalBow1G3326' => 'sbo', 'SalBow3G3228' => 'sbo', 'SalBow6G1634' => 'sbo', 'SalBow6G3603' => 'sbo', 'SalBow6G5266' => 'sbo', 'SalBow7G2265' => 'sbo', 'SalBow8G0850' => 'sbo', 'SalBow8G2592' => 'sbo', 'Sc05g0009240' => 'sci', 'Sc12g0002300' => 'sci', 'Sc21g0000100' => 'sci', 'Sc21g0004720' => 'sci', 'Sed0002949' => 'sed', 'Sed0004114' => 'sed', 'Sed0004306' => 'sed', 'Sed0006172' => 'sed', 'Sed0008413' => 'sed', 'Sed0013809' => 'sed', 'Sed0019556' => 'sed', 'SEGI_03570' => 'sgi', 'SEGI_07859' => 'sgi', 'SEGI_15042' => 'sgi', 'SEGI_16263' => 'sgi', 'SEGI_16552' => 'sgi', 'SEGI_24331' => 'sgi', 'SEGI_27316' => 'sgi', 'SEGI_29521' => 'sgi', 'SEGI_41342' => 'sgi', 'SGA_v2.0_scaffold27G11617' => 'sas', 'SGA_v2.0_scaffold316G48428' => 'sas', 'SGA_v2.0_scaffold49G18261' => 'sas', 'SGA_v2.0_scaffold7G03831' => 'sas', 'SGA_v2.0_scaffold93G28359' => 'sas', 'SHI02210' => 'shi', 'SHI06028' => 'shi', 'SHI06321' => 'shi', 'SMO111G0012' => 'smo', 'SMO228G0080' => 'smo', 'SMO356G0756' => 'smo', 'Solyc02g080620.3' => 'sly', 'Solyc06g074530.1' => 'sly', 'Solyc11g066890.1' => 'sly', 'Solyc11g072520.3' => 'sly', 'Sopen02g025330' => 'spe', 'Sopen06g031000' => 'spe', 'Sopen09g008240' => 'spe', 'Sopen09g025210' => 'spe', 'Sopen11g026600' => 'spe', 'Sopen11g030170' => 'spe', 'Sp1g10420' => 'spa', 'Sp3g06570' => 'spa', 'Sp4g10660' => 'spa', 'Sp5g16460' => 'spa', 'Sp6g22710' => 'spa', 'TAR365G0112' => 'tar', 'TAR369G0717' => 'tar', 'TAR374G0976' => 'tar', 'TAR623G1128' => 'tar', 'TAR626G1937' => 'tar', 'TAR627G0123' => 'tar', 'TAR628G0305' => 'tar', 'TAR636G1176' => 'tar', 'TAR636G2442' => 'tar', 'THA.LOC104800556' => 'tha', 'THA.LOC104809501' => 'tha', 'THA.LOC104815126' => 'tha', 'THA.LOC104815732' => 'tha', 'THA.LOC104823528' => 'tha', 'Thecc.02G365600' => 'tca', 'Thecc.06G222300' => 'tca', 'Thecc.09G261800' => 'tca', 'Thecc.09G291400' => 'tca', 'Thhalv10003028m.g' => 'esa', 'Thhalv10007886m.g' => 'esa', 'Thhalv10016085m.g' => 'esa', 'Thhalv10016681m.g' => 'esa', 'Thhalv10020951m.g' => 'esa', 'TPR.G15598' => 'tpr', 'TPR.G29305' => 'tpr', 'TPR.G32395' => 'tpr', 'TPR.G36998' => 'tpr', 'TPR.G4227' => 'tpr', 'TWI18G1433' => 'twi', 'TWI31G0755' => 'twi', 'TWI38G0912' => 'twi', 'TWI75G1097' => 'twi', 'TWI75G1619' => 'twi', 'TWI79G1336' => 'twi', 'unitig_0.g943' => 'ugi', 'unitig_0.g944' => 'ugi', 'unitig_22.g6646' => 'ugi', 'unitig_37.g12681' => 'ugi', 'unitig_8.g3290' => 'ugi', 'vmacro03278' => 'vma', 'vmacro12197' => 'vma', 'vmacro14478' => 'vma', 'vmacro15787' => 'vma', 'vmacro15789' => 'vma', 'vmacro15790' => 'vma', 'vmacro15806' => 'vma', 'vmacro22907' => 'vma', 'vmacro22908' => 'vma', 'vmacro22909' => 'vma', 'vmacro23108' => 'vma', 'VMungo0540G0540' => 'vmu', 'VMungo0540G2468' => 'vmu', 'VMungo1080G0390' => 'vmu', 'VMungo1080G1165' => 'vmu', 'VMungo1127G0170' => 'vmu', 'VMungo1127G2099' => 'vmu', 'VMungo1215G3013' => 'vmu', 'Zm00001eb013110' => 'zma', 'Zm00001eb084260' => 'zma', 'Zm00001eb096110' => 'zma', 'Zm00001eb217510' => 'zma', 'Zm00001eb322550' => 'zma', 'Zm00001eb390770' => 'zma', 'Zm00001eb397170' => 'zma', 'Zm00001eb404610' => 'zma', 'Zm00001eb421790' => 'zma' ) $gf_id = 'HOM05D000911' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000911' ) $data_identifier = 'HOM05D000911' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 16, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 5, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 6, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 8, 'nnu' => (int) 16, 'oeu' => (int) 8, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 5, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 16, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421790' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000911', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27780' => 'bna', 'A03p35380' => 'bna', 'A04p21160' => 'bna', 'A05p40570' => 'bna', 'A06p26900' => 'bna', 'A08p33230' => 'bna', 'A09p65960' => 'bna', 'A10p18290' => 'bna', 'Aa31LG1G12990' => 'aar', 'Aa31LG1G2980' => 'aar', 'Aa31LG4G14320' => 'aar', 'Aa31LG7G11800' => 'aar', 'Aa31sc36G50' => 'aar', 'Aa31sc36G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3721' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5459' => 'aag', 'Actinidia03028' => 'ach', 'Actinidia03753' => 'ach', 'Actinidia04187' => 'ach', 'Actinidia05509' => 'ach', 'Actinidia24180' => 'ach', 'Actinidia26906' => 'ach', 'Actinidia37097' => 'ach', 'Actinidia38249' => 'ach', 'Ah.01g003470' => 'amhyb', 'Ah.01g004580' => 'amhyb', 'Ah.01g014850' => 'amhyb', 'Ah.01g016830' => 'amhyb', 'Ah.14g088000' => 'amhyb', 'AL1G22980' => 'aly', 'AL3G18990' => 'aly', 'AL4G22440' => 'aly', 'AL4G33180' => 'aly', 'AL5G22920' => 'aly', 'AL6G33660' => 'aly', 'AL8G20720' => 'aly', 'Aqoxy1G00935' => 'aox', 'Aqoxy1G02094' => 'aox', 'Aqoxy2G01239' => 'aox', 'Aqoxy4G01870' => 'aox', 'Aqoxy7G00450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.36ZVTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71EM27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5D6C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH3WRE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3NCM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RIM768' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YB5YRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z36GDV' => 'arhy', 'AT1G08250' => 'ath', 'AT1G11790' => 'ath', 'AT2G27820' => 'ath', 'AT3G07630' => 'ath', 'AT3G44720' => 'ath', 'AT5G22630' => 'ath', 'ATR0693G304' => 'atr', 'ATR0794G109' => 'atr', 'ATR0820G120' => 'atr', 'ATR1159G064' => 'atr', 'Atru.chr10.2239' => 'acertr', 'Atru.chr3.3371' => 'acertr', 'Atru.chr6.3202' => 'acertr', 'AUR62006499' => 'cqu', 'AUR62012718' => 'cqu', 'AUR62021938' => 'cqu', 'AUR62023932' => 'cqu', 'AUR62025034' => 'cqu', 'AUR62025035' => 'cqu', 'AUR62038307' => 'cqu', 'AUR62043466' => 'cqu', 'BcaB02g10748' => 'bca', 'BcaB03g13231' => 'bca', 'BcaB03g14689' => 'bca', 'BcaB05g22716' => 'bca', 'BcaB06g28172' => 'bca', 'BcaB08g36413' => 'bca', 'BcaC01g02186' => 'bca', 'BcaC01g04272' => 'bca', 'BcaC02g08080' => 'bca', 'BcaC02g08227' => 'bca', 'BcaC03g13901' => 'bca', 'BcaC04g19593' => 'bca', 'BcaC04g20874' => 'bca', 'BcaC05g29557' => 'bca', 'BcaC06g35505' => 'bca', 'BcaC07g41954' => 'bca', 'BcaC07g41955' => 'bca', 'BcaC07g41956' => 'bca', 'BcaC07g42519' => 'bca', 'BcaC07g42520' => 'bca', 'BcaC07g42523' => 'bca', 'BcaC07g42524' => 'bca', 'BcaC07g42525' => 'bca', 'BcaC08g47480' => 'bca', 'BcaC08g47481' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00530' => 'bna', 'BolC2t07178H' => 'bol', 'BolC3t16567H' => 'bol', 'BolC4t27234H' => 'bol', 'BolC5t29728H' => 'bol', 'BolC5t34622H' => 'bol', 'BolC6t40321H' => 'bol', 'BolC7t42028H' => 'bol', 'BolC8t49125H' => 'bol', 'BolC8t52538H' => 'bol', 'BolC8t52539H' => 'bol', 'BolC9t56681H' => 'bol', 'BolC9t58266H' => 'bol', 'BolSC21t60294H' => 'bol', 'BraA02t05670Z' => 'bra', 'BraA03t12716Z' => 'bra', 'BraA04t17685Z' => 'bra', 'BraA05t22788Z' => 'bra', 'BraA06t24032Z' => 'bra', 'BraA06t25625Z' => 'bra', 'BraA07t27930Z' => 'bra', 'BraA08t35242Z' => 'bra', 'BraA09t38609Z' => 'bra', 'BraA10t43905Z' => 'bra', 'C02p11060' => 'bna', 'C03p42990' => 'bna', 'C03p67310' => 'bna', 'C04p56990' => 'bna', 'C04p58660' => 'bna', 'C05p09890' => 'bna', 'C05p59680' => 'bna', 'C06p19830' => 'bna', 'C06p53040' => 'bna', 'C07p15230' => 'bna', 'C08p50070' => 'bna', 'C08p50090' => 'bna', 'C09p38330' => 'bna', 'C09p53940' => 'bna', 'CAN.G1014.1' => 'can', 'CAN.G644.30' => 'can', 'CAN.G84.47' => 'can', 'CAN.G919.8' => 'can', 'CANSAT54G0113' => 'cansat', 'CANSAT54G1286' => 'cansat', 'CANSAT64G1020' => 'cansat', 'CARHR008080' => 'chi', 'CARHR008090' => 'chi', 'CARHR012130' => 'chi', 'CARHR038390' => 'chi', 'CARHR082330' => 'chi', 'CARHR120520' => 'chi', 'CARHR151470' => 'chi', 'CARHR190950' => 'chi', 'Carub.0001s0760' => 'cru', 'Carub.0001s1146' => 'cru', 'Carub.0003s0721' => 'cru', 'Carub.0004s0858' => 'cru', 'Carub.0005s1040' => 'cru', 'Carub.0006s2035' => 'cru', 'Carub.0015s0005' => 'cru', 'Ca_01607_v3' => 'car', 'Ca_01677_v3' => 'car', 'Ca_06087_v3' => 'car', 'Ca_19238_v3' => 'car', 'Ca_19373_v3' => 'car', 'Ca_21079_v3' => 'car', 'CBR_g54016' => 'cbr', 'CBR_g54018' => 'cbr', 'CBR_g54020' => 'cbr', 'Cc01_g09780' => 'ccan', 'Cc01_g11680' => 'ccan', 'Cc02_g15610' => 'ccan', 'Cc05_g04350' => 'ccan', 'Cc09_g01580' => 'ccan', 'CDE01G0795' => 'cde', 'CDE02G2024' => 'cde', 'CDE02G2260' => 'cde', 'CDE02G4561' => 'cde', 'CDE05G2733' => 'cde', 'CDE05G3422' => 'cde', 'CDE06G2003' => 'cde', 'CDE08G0576' => 'cde', 'CDE09G0048' => 'cde', 'CDE11G0805' => 'cde', 'Cfa003644' => 'cfa', 'Cfa006290' => 'cfa', 'Cfa010080' => 'cfa', 'Cfa011376' => 'cfa', 'Cfa011576' => 'cfa', 'Cfa011577' => 'cfa', 'Cfa014389' => 'cfa', 'Ciclev10006044m.g' => 'ccl', 'Ciclev10006954m.g' => 'ccl', 'Ciclev10015131m.g' => 'ccl', 'Ciclev10015580m.g' => 'ccl', 'Ciclev10028359m.g' => 'ccl', 'Ciclev10028573m.g' => 'ccl', 'CiPaw.03G159300' => 'cil', 'CiPaw.04G115100' => 'cil', 'CiPaw.09G092800' => 'cil', 'CiPaw.10G071800' => 'cil', 'CiPaw.13G105800' => 'cil', 'CiPaw.13G141000' => 'cil', 'CiPaw.14G103400' => 'cil', 'ClCG01G012700' => 'cla', 'ClCG01G012720' => 'cla', 'ClCG01G021920' => 'cla', 'ClCG02G008870' => 'cla', 'ClCG02G020840' => 'cla', 'ClCG02G021930' => 'cla', 'COL.COLO4_19302' => 'col', 'COL.COLO4_25262' => 'col', 'COL.COLO4_31788' => 'col', 'Cpa.g.c34684' => 'cpa', 'Cpa.g.c36520.1' => 'cpa', 'Cpa.g.c45626' => 'cpa', 'Cpa.g.sc121.17' => 'cpa', 'Cpa.g.sc13.22' => 'cpa', 'Cpa.g.sc87.88' => 'cpa', 'Cre06.g261800' => 'cre', 'CsaV3_1G014500' => 'csa', 'CsaV3_1G014510' => 'csa', 'CsaV3_2G034880' => 'csa', 'CsaV3_6G014760' => 'csa', 'CsaV3_6G021500' => 'csa', 'CsaV3_6G048980' => 'csa', 'CSS0002511' => 'camsi', 'CSS0007556' => 'camsi', 'CSS0008532' => 'camsi', 'CSS0009709' => 'camsi', 'CSS0010486' => 'camsi', 'CSS0016768' => 'camsi', 'CSS0023512' => 'camsi', 'CSS0025341' => 'camsi', 'CSS0027999' => 'camsi', 'CSS0028944' => 'camsi', 'CSS0032292' => 'camsi', 'CSS0032464' => 'camsi', 'CSS0037153' => 'camsi', 'CSS0039256' => 'camsi', 'CSS0048392' => 'camsi', 'CSS0050458' => 'camsi', 'DCAR_004224' => 'dca', 'DCAR_006147' => 'dca', 'DCAR_006465' => 'dca', 'DCAR_008159' => 'dca', 'DCAR_012164' => 'dca', 'DCAR_019764' => 'dca', 'Dinv05418' => 'din', 'Dinv10839' => 'din', 'Dinv12521' => 'din', 'Dinv13900' => 'din', 'Dinv29426' => 'din', 'Duzib150G0263' => 'dzi', 'Duzib168G1178' => 'dzi', 'Duzib168G1924' => 'dzi', 'Duzib170G0299' => 'dzi', 'Duzib170G0813' => 'dzi', 'Duzib235G1128' => 'dzi', 'Duzib248G1060' => 'dzi', 'ECA232G1910' => 'eca', 'ECA233G4621' => 'eca', 'ECA238G1216' => 'eca', 'ECA238G1784' => 'eca', 'ECA248G1242' => 'eca', 'EL10Ac8g20071' => 'bvu', 'EL10Ac9g21086' => 'bvu', 'EL10Ac9g22407' => 'bvu', 'EL10Ac9g22412' => 'bvu', 'Eucgr.A01119' => 'egr', 'Eucgr.E04043' => 'egr', 'Eucgr.J00428' => 'egr', 'Eucgr.J00958' => 'egr', 'FAN11G3091' => 'fan', 'FAN11G3651' => 'fan', 'FAN16G2566' => 'fan', 'FAN21G3155' => 'fan', 'FAN21G3400' => 'fan', 'FAN21G3543' => 'fan', 'FAN25G0234' => 'fan', 'FAN25G1422' => 'fan', 'FAN25G3392' => 'fan', 'FvH4_3g01940' => 'fve', 'FvH4_3g29870' => 'fve', 'FvH4_3g33680' => 'fve', 'Glyma.09G004200' => 'gma', 'Glyma.11G151288' => 'gma', 'Glyma.11G189100' => 'gma', 'Glyma.12G072500' => 'gma', 'Glyma.12G085500' => 'gma', 'Glyma.12G181800' => 'gma', 'Glyma.12G193000' => 'gma', 'Glyma.13G309300' => 'gma', 'Glyma.13G319000' => 'gma', 'Glyma.17G012600' => 'gma', 'Gohir.A06G148600' => 'ghi', 'Gohir.A07G115800' => 'ghi', 'Gohir.A08G003600' => 'ghi', 'Gohir.A09G093300' => 'ghi', 'Gohir.A09G105400' => 'ghi', 'Gohir.A09G105500' => 'ghi', 'Gohir.D06G154600' => 'ghi', 'Gohir.D07G120200' => 'ghi', 'Gohir.D08G013900' => 'ghi', 'Gohir.D09G093100' => 'ghi', 'Gohir.D09G102200' => 'ghi', 'Gohir.D09G102300' => 'ghi', 'Gorai.001G129400' => 'gra', 'Gorai.004G008200' => 'gra', 'Gorai.006G109800' => 'gra', 'Gorai.006G119500' => 'gra', 'Gorai.006G121300' => 'gra', 'Gorai.010G180700' => 'gra', 'GSVIVG01012716001' => 'vvi', 'GSVIVG01025118001' => 'vvi', 'GSVIVG01030439001' => 'vvi', 'GSVIVG01031397001' => 'vvi', 'HanXRQChr01g0004201' => 'han', 'HanXRQChr02g0054941' => 'han', 'HanXRQChr05g0141811' => 'han', 'HanXRQChr07g0197751' => 'han', 'HanXRQChr11g0346691' => 'han', 'HanXRQChr13g0396971' => 'han', 'HanXRQChr14g0432951' => 'han', 'HanXRQChr14g0452001' => 'han', 'HanXRQChr15g0496681' => 'han', 'HanXRQChr17g0557491' => 'han', 'HanXRQChr17g0557501' => 'han', 'Haze_06809' => 'cav', 'Haze_12852' => 'cav', 'Haze_15850' => 'cav', 'Haze_23446' => 'cav', 'Haze_23942' => 'cav', 'Haze_23943' => 'cav', 'Hma1.2p1_0091F.1_g046450' => 'hma', 'Hma1.2p1_0128F.1_g059910' => 'hma', 'Hma1.2p1_0249F.1_g102260' => 'hma', 'Hma1.2p1_0453F.1_g156190' => 'hma', 'Hma1.2p1_0695F.1_g204380' => 'hma', 'Hma1.2p1_0749F.1_g212650' => 'hma', 'Hma1.2p1_2156F.1_g315420' => 'hma', 'Hma1.2p1_2686F.1_g326940' => 'hma', 'HPP92_006428' => 'vpl', 'HPP92_012069' => 'vpl', 'HPP92_014129' => 'vpl', 'HPP92_014133' => 'vpl', 'HPP92_017315' => 'vpl', 'HPP92_026445' => 'vpl', 'HPP92_026446' => 'vpl', 'Hund00774' => 'sun', 'Hund07682' => 'sun', 'Hund21413' => 'sun', 'Hund23462' => 'sun', 'Hund23463' => 'sun', 'Lalb_Chr03g0027911' => 'lal', 'Lalb_Chr13g0304271' => 'lal', 'Lalb_Chr19g0137471' => 'lal', 'Lalb_Chr22g0350651' => 'lal', 'Lalb_Chr24g0395151' => 'lal', 'Lj1A1231T40' => 'lonja', 'Lj1A221T48' => 'lonja', 'Lj1C924T12' => 'lonja', 'Lj2C993G6' => 'lonja', 'Lj3g0005790' => 'lja', 'Lj3g0015432' => 'lja', 'Lj3g0017722' => 'lja', 'Lj3g0018497' => 'lja', 'Lj4g0025071' => 'lja', 'Lsat_1_v5_gn_1_129680' => 'lsa', 'Lsat_1_v5_gn_2_25321' => 'lsa', 'Lsat_1_v5_gn_2_95461' => 'lsa', 'Lsat_1_v5_gn_4_159620' => 'lsa', 'Lsat_1_v5_gn_6_41301' => 'lsa', 'Lsat_1_v5_gn_6_74660' => 'lsa', 'Lsat_1_v5_gn_7_11520' => 'lsa', 'Lsat_1_v5_gn_9_67680' => 'lsa', 'Manes.04G008300' => 'mes', 'Manes.04G008400' => 'mes', 'Manes.04G026500' => 'mes', 'Manes.10G135300' => 'mes', 'Manes.11G157300' => 'mes', 'Manes.12G074000' => 'mes', 'Manes.16G006200' => 'mes', 'Manes.17G026400' => 'mes', 'Mapoly0024s0086' => 'mpo', 'Mapoly0024s0087' => 'mpo', 'Mapoly0071s0057' => 'mpo', 'Mapoly0204s0012' => 'mpo', 'MBI04_g37681_MAGBIO' => 'mbi', 'MBI05_g17779_MAGBIO' => 'mbi', 'MBI12_g31184_MAGBIO' => 'mbi', 'MBI17_g11083_MAGBIO' => 'mbi', 'MBI18_g03883_MAGBIO' => 'mbi', 'MBI18_g28940_MAGBIO' => 'mbi', 'MCO01G690' => 'mco', 'MD03G1109900' => 'mdo', 'MD03G1134800' => 'mdo', 'MD05G1348000' => 'mdo', 'MD10G1322400' => 'mdo', 'MD11G1123300' => 'mdo', 'MD11G1157600' => 'mdo', 'Medtr2g084875' => 'mtr', 'Medtr2g088130' => 'mtr', 'Medtr4g055310' => 'mtr', 'Medtr4g061070' => 'mtr', 'Medtr4g132250' => 'mtr', 'MELO3C004795.2' => 'cme', 'MELO3C004797.2' => 'cme', 'MELO3C007396.2' => 'cme', 'MELO3C019277.2' => 'cme', 'MELO3C021449.2' => 'cme', 'MELO3C025736.2' => 'cme', 'Migut.D02175' => 'egut', 'Migut.H01573' => 'egut', 'Migut.M01327' => 'egut', 'Migut.N02513' => 'egut', 'MSTRG.14638' => 'ama', 'MSTRG.18632' => 'ama', 'MSTRG.7203' => 'ama', 'Nitab4.5_0000533g0140' => 'nta', 'Nitab4.5_0000888g0150' => 'nta', 'Nitab4.5_0001453g0040' => 'nta', 'Nitab4.5_0002827g0090' => 'nta', 'Nitab4.5_0003082g0040' => 'nta', 'Nitab4.5_0007799g0040' => 'nta', 'Nitab4.5_0008983g0010' => 'nta', 'Nitab4.5_0009017g0020' => 'nta', 'Nn1g02132' => 'nnu', 'Nn1g03492' => 'nnu', 'Nn1g03493' => 'nnu', 'Nn1g03494' => 'nnu', 'Nn1g07164' => 'nnu', 'Nn1g07291' => 'nnu', 'Nn2g10655' => 'nnu', 'Nn2g11652' => 'nnu', 'Nn2g14008' => 'nnu', 'Nn3g17476' => 'nnu', 'Nn3g17477' => 'nnu', 'Nn4g22370' => 'nnu', 'Nn4g25255' => 'nnu', 'Nn5g27755' => 'nnu', 'Nn6g34260' => 'nnu', 'Nn6g35041' => 'nnu', 'Oeu005924.1' => 'oeu', 'Oeu008383.1' => 'oeu', 'Oeu014928.1' => 'oeu', 'Oeu019889.1' => 'oeu', 'Oeu022271.1' => 'oeu', 'Oeu025271.1' => 'oeu', 'Oeu036302.1' => 'oeu', 'Oeu044100.1' => 'oeu', 'Os01g0528300' => 'osa', 'Os03g0286200' => 'osa', 'Os04g0406600' => 'osa', 'Os07g0512000' => 'osa', 'Os07g0694600' => 'osa', 'Os08g0411000' => 'osa', 'Os09g0565700' => 'osa', 'Os09g0566050' => 'osa', 'Os10g0523700' => 'osa', 'Peaxi162Scf00002g00514' => 'pax', 'Peaxi162Scf00047g01817' => 'pax', 'Peaxi162Scf00114g00001' => 'pax', 'Peaxi162Scf00147g00613' => 'pax', 'Peaxi162Scf00389g00425' => 'pax', 'PGR042G1139' => 'pgr', 'PGR042G3273' => 'pgr', 'PGR102G2180' => 'pgr', 'PGR119G0234' => 'pgr', 'PGR119G0668' => 'pgr', 'PGSC0003DMG400007122' => 'stu', 'PGSC0003DMG400016478' => 'stu', 'PGSC0003DMG400025374' => 'stu', 'PGSC0003DMG400026536' => 'stu', 'Phvul.003G079600' => 'pvu', 'Phvul.005G115600' => 'pvu', 'Phvul.005G127100' => 'pvu', 'Phvul.006G149500' => 'pvu', 'Phvul.006G149600' => 'pvu', 'Phvul.011G071800' => 'pvu', 'Phvul.011G090400' => 'pvu', 'Potri.004G013400' => 'ptr', 'Potri.004G188100' => 'ptr', 'Potri.008G195500' => 'ptr', 'Potri.009G148800' => 'ptr', 'Potri.011G004700' => 'ptr', 'Pp3c17_22810' => 'ppa', 'Pp3c18_4480' => 'ppa', 'Pp3c19_13030' => 'ppa', 'Pp3c1_33620' => 'ppa', 'Pp3c2_9380' => 'ppa', 'PRCOL_00001023' => 'pco', 'Prupe.3G216300' => 'ppe', 'Prupe.4G019500' => 'ppe', 'Prupe.6G092500' => 'ppe', 'Prupe.6G119200' => 'ppe', 'Psat0s1945g0080' => 'psa', 'Psat0s4167g0040' => 'psa', 'Psat1g185800' => 'psa', 'Psat4g006440' => 'psa', 'Psat4g006480' => 'psa', 'Psat4g168120' => 'psa', 'Psat5g255680' => 'psa', 'Psat5g261760' => 'psa', 'Psat7g222120' => 'psa', 'PSO063G7252' => 'pso', 'PSO170G4778' => 'pso', 'PSO210G2249' => 'pso', 'PSO339G2411' => 'pso', 'PSO339G2457' => 'pso', 'PSO339G2854' => 'pso', 'PSO339G4288' => 'pso', 'PSO339G4615' => 'pso', 'PSO384G2796' => 'pso', 'PSO384G2940' => 'pso', 'PSO384G4227' => 'pso', 'PSO478G1425' => 'pso', 'PSO541G3863' => 'pso', 'PSO675G0507' => 'pso', 'PSO782G0338' => 'pso', 'PSO832G0644' => 'pso', 'QL01p013664' => 'qlo', 'QL01p036598' => 'qlo', 'QL05p072984' => 'qlo', 'QL08p005768' => 'qlo', 'QL08p032743' => 'qlo', 'QL93p0073_0439' => 'qlo', 'QL93p0073_0444' => 'qlo', 'RcHm_v2.0_Chr5g0002851' => 'rch', 'RcHm_v2.0_Chr5g0055201' => 'rch', 'RcHm_v2.0_Chr5g0061191' => 'rch', 'RcHm_v2.0_Chr7g0203231' => 'rch', 'Rhsim01G0208100' => 'rsi', 'Rhsim01G0208200' => 'rsi', 'Rhsim02G0106500' => 'rsi', 'Rhsim03G0107900' => 'rsi', 'Rhsim06G0163400' => 'rsi', 'Rhsim13G0105200' => 'rsi', 'Sabra04G0006300' => 'sbr', 'Sabra04G0127000' => 'sbr', 'Sabra08G0148700' => 'sbr', 'Sabra09G0117400' => 'sbr', 'SalBow1G3326' => 'sbo', 'SalBow3G3228' => 'sbo', 'SalBow6G1634' => 'sbo', 'SalBow6G3603' => 'sbo', 'SalBow6G5266' => 'sbo', 'SalBow7G2265' => 'sbo', 'SalBow8G0850' => 'sbo', 'SalBow8G2592' => 'sbo', 'Sc05g0009240' => 'sci', 'Sc12g0002300' => 'sci', 'Sc21g0000100' => 'sci', 'Sc21g0004720' => 'sci', 'Sed0002949' => 'sed', 'Sed0004114' => 'sed', 'Sed0004306' => 'sed', 'Sed0006172' => 'sed', 'Sed0008413' => 'sed', 'Sed0013809' => 'sed', 'Sed0019556' => 'sed', 'SEGI_03570' => 'sgi', 'SEGI_07859' => 'sgi', 'SEGI_15042' => 'sgi', 'SEGI_16263' => 'sgi', 'SEGI_16552' => 'sgi', 'SEGI_24331' => 'sgi', 'SEGI_27316' => 'sgi', 'SEGI_29521' => 'sgi', 'SEGI_41342' => 'sgi', 'SGA_v2.0_scaffold27G11617' => 'sas', 'SGA_v2.0_scaffold316G48428' => 'sas', 'SGA_v2.0_scaffold49G18261' => 'sas', 'SGA_v2.0_scaffold7G03831' => 'sas', 'SGA_v2.0_scaffold93G28359' => 'sas', 'SHI02210' => 'shi', 'SHI06028' => 'shi', 'SHI06321' => 'shi', 'SMO111G0012' => 'smo', 'SMO228G0080' => 'smo', 'SMO356G0756' => 'smo', 'Solyc02g080620.3' => 'sly', 'Solyc06g074530.1' => 'sly', 'Solyc11g066890.1' => 'sly', 'Solyc11g072520.3' => 'sly', 'Sopen02g025330' => 'spe', 'Sopen06g031000' => 'spe', 'Sopen09g008240' => 'spe', 'Sopen09g025210' => 'spe', 'Sopen11g026600' => 'spe', 'Sopen11g030170' => 'spe', 'Sp1g10420' => 'spa', 'Sp3g06570' => 'spa', 'Sp4g10660' => 'spa', 'Sp5g16460' => 'spa', 'Sp6g22710' => 'spa', 'TAR365G0112' => 'tar', 'TAR369G0717' => 'tar', 'TAR374G0976' => 'tar', 'TAR623G1128' => 'tar', 'TAR626G1937' => 'tar', 'TAR627G0123' => 'tar', 'TAR628G0305' => 'tar', 'TAR636G1176' => 'tar', 'TAR636G2442' => 'tar', 'THA.LOC104800556' => 'tha', 'THA.LOC104809501' => 'tha', 'THA.LOC104815126' => 'tha', 'THA.LOC104815732' => 'tha', 'THA.LOC104823528' => 'tha', 'Thecc.02G365600' => 'tca', 'Thecc.06G222300' => 'tca', 'Thecc.09G261800' => 'tca', 'Thecc.09G291400' => 'tca', 'Thhalv10003028m.g' => 'esa', 'Thhalv10007886m.g' => 'esa', 'Thhalv10016085m.g' => 'esa', 'Thhalv10016681m.g' => 'esa', 'Thhalv10020951m.g' => 'esa', 'TPR.G15598' => 'tpr', 'TPR.G29305' => 'tpr', 'TPR.G32395' => 'tpr', 'TPR.G36998' => 'tpr', 'TPR.G4227' => 'tpr', 'TWI18G1433' => 'twi', 'TWI31G0755' => 'twi', 'TWI38G0912' => 'twi', 'TWI75G1097' => 'twi', 'TWI75G1619' => 'twi', 'TWI79G1336' => 'twi', 'unitig_0.g943' => 'ugi', 'unitig_0.g944' => 'ugi', 'unitig_22.g6646' => 'ugi', 'unitig_37.g12681' => 'ugi', 'unitig_8.g3290' => 'ugi', 'vmacro03278' => 'vma', 'vmacro12197' => 'vma', 'vmacro14478' => 'vma', 'vmacro15787' => 'vma', 'vmacro15789' => 'vma', 'vmacro15790' => 'vma', 'vmacro15806' => 'vma', 'vmacro22907' => 'vma', 'vmacro22908' => 'vma', 'vmacro22909' => 'vma', 'vmacro23108' => 'vma', 'VMungo0540G0540' => 'vmu', 'VMungo0540G2468' => 'vmu', 'VMungo1080G0390' => 'vmu', 'VMungo1080G1165' => 'vmu', 'VMungo1127G0170' => 'vmu', 'VMungo1127G2099' => 'vmu', 'VMungo1215G3013' => 'vmu', 'Zm00001eb013110' => 'zma', 'Zm00001eb084260' => 'zma', 'Zm00001eb096110' => 'zma', 'Zm00001eb217510' => 'zma', 'Zm00001eb322550' => 'zma', 'Zm00001eb390770' => 'zma', 'Zm00001eb397170' => 'zma', 'Zm00001eb404610' => 'zma', 'Zm00001eb421790' => 'zma' ), 'gf_id' => 'HOM05D000911', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000911' ), 'data_identifier' => 'HOM05D000911', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000911', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27780' => 'bna', 'A03p35380' => 'bna', 'A04p21160' => 'bna', 'A05p40570' => 'bna', 'A06p26900' => 'bna', 'A08p33230' => 'bna', 'A09p65960' => 'bna', 'A10p18290' => 'bna', 'Aa31LG1G12990' => 'aar', 'Aa31LG1G2980' => 'aar', 'Aa31LG4G14320' => 'aar', 'Aa31LG7G11800' => 'aar', 'Aa31sc36G50' => 'aar', 'Aa31sc36G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3721' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5459' => 'aag', 'Actinidia03028' => 'ach', 'Actinidia03753' => 'ach', 'Actinidia04187' => 'ach', 'Actinidia05509' => 'ach', 'Actinidia24180' => 'ach', 'Actinidia26906' => 'ach', 'Actinidia37097' => 'ach', 'Actinidia38249' => 'ach', 'Ah.01g003470' => 'amhyb', 'Ah.01g004580' => 'amhyb', 'Ah.01g014850' => 'amhyb', 'Ah.01g016830' => 'amhyb', 'Ah.14g088000' => 'amhyb', 'AL1G22980' => 'aly', 'AL3G18990' => 'aly', 'AL4G22440' => 'aly', 'AL4G33180' => 'aly', 'AL5G22920' => 'aly', 'AL6G33660' => 'aly', 'AL8G20720' => 'aly', 'Aqoxy1G00935' => 'aox', 'Aqoxy1G02094' => 'aox', 'Aqoxy2G01239' => 'aox', 'Aqoxy4G01870' => 'aox', 'Aqoxy7G00450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.36ZVTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71EM27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5D6C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH3WRE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3NCM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RIM768' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YB5YRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z36GDV' => 'arhy', 'AT1G08250' => 'ath', 'AT1G11790' => 'ath', 'AT2G27820' => 'ath', 'AT3G07630' => 'ath', 'AT3G44720' => 'ath', 'AT5G22630' => 'ath', 'ATR0693G304' => 'atr', 'ATR0794G109' => 'atr', 'ATR0820G120' => 'atr', 'ATR1159G064' => 'atr', 'Atru.chr10.2239' => 'acertr', 'Atru.chr3.3371' => 'acertr', 'Atru.chr6.3202' => 'acertr', 'AUR62006499' => 'cqu', 'AUR62012718' => 'cqu', 'AUR62021938' => 'cqu', 'AUR62023932' => 'cqu', 'AUR62025034' => 'cqu', 'AUR62025035' => 'cqu', 'AUR62038307' => 'cqu', 'AUR62043466' => 'cqu', 'BcaB02g10748' => 'bca', 'BcaB03g13231' => 'bca', 'BcaB03g14689' => 'bca', 'BcaB05g22716' => 'bca', 'BcaB06g28172' => 'bca', 'BcaB08g36413' => 'bca', 'BcaC01g02186' => 'bca', 'BcaC01g04272' => 'bca', 'BcaC02g08080' => 'bca', 'BcaC02g08227' => 'bca', 'BcaC03g13901' => 'bca', 'BcaC04g19593' => 'bca', 'BcaC04g20874' => 'bca', 'BcaC05g29557' => 'bca', 'BcaC06g35505' => 'bca', 'BcaC07g41954' => 'bca', 'BcaC07g41955' => 'bca', 'BcaC07g41956' => 'bca', 'BcaC07g42519' => 'bca', 'BcaC07g42520' => 'bca', 'BcaC07g42523' => 'bca', 'BcaC07g42524' => 'bca', 'BcaC07g42525' => 'bca', 'BcaC08g47480' => 'bca', 'BcaC08g47481' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00530' => 'bna', 'BolC2t07178H' => 'bol', 'BolC3t16567H' => 'bol', 'BolC4t27234H' => 'bol', 'BolC5t29728H' => 'bol', 'BolC5t34622H' => 'bol', 'BolC6t40321H' => 'bol', 'BolC7t42028H' => 'bol', 'BolC8t49125H' => 'bol', 'BolC8t52538H' => 'bol', 'BolC8t52539H' => 'bol', 'BolC9t56681H' => 'bol', 'BolC9t58266H' => 'bol', 'BolSC21t60294H' => 'bol', 'BraA02t05670Z' => 'bra', 'BraA03t12716Z' => 'bra', 'BraA04t17685Z' => 'bra', 'BraA05t22788Z' => 'bra', 'BraA06t24032Z' => 'bra', 'BraA06t25625Z' => 'bra', 'BraA07t27930Z' => 'bra', 'BraA08t35242Z' => 'bra', 'BraA09t38609Z' => 'bra', 'BraA10t43905Z' => 'bra', 'C02p11060' => 'bna', 'C03p42990' => 'bna', 'C03p67310' => 'bna', 'C04p56990' => 'bna', 'C04p58660' => 'bna', 'C05p09890' => 'bna', 'C05p59680' => 'bna', 'C06p19830' => 'bna', 'C06p53040' => 'bna', 'C07p15230' => 'bna', 'C08p50070' => 'bna', 'C08p50090' => 'bna', 'C09p38330' => 'bna', 'C09p53940' => 'bna', 'CAN.G1014.1' => 'can', 'CAN.G644.30' => 'can', 'CAN.G84.47' => 'can', 'CAN.G919.8' => 'can', 'CANSAT54G0113' => 'cansat', 'CANSAT54G1286' => 'cansat', 'CANSAT64G1020' => 'cansat', 'CARHR008080' => 'chi', 'CARHR008090' => 'chi', 'CARHR012130' => 'chi', 'CARHR038390' => 'chi', 'CARHR082330' => 'chi', 'CARHR120520' => 'chi', 'CARHR151470' => 'chi', 'CARHR190950' => 'chi', 'Carub.0001s0760' => 'cru', 'Carub.0001s1146' => 'cru', 'Carub.0003s0721' => 'cru', 'Carub.0004s0858' => 'cru', 'Carub.0005s1040' => 'cru', 'Carub.0006s2035' => 'cru', 'Carub.0015s0005' => 'cru', 'Ca_01607_v3' => 'car', 'Ca_01677_v3' => 'car', 'Ca_06087_v3' => 'car', 'Ca_19238_v3' => 'car', 'Ca_19373_v3' => 'car', 'Ca_21079_v3' => 'car', 'CBR_g54016' => 'cbr', 'CBR_g54018' => 'cbr', 'CBR_g54020' => 'cbr', 'Cc01_g09780' => 'ccan', 'Cc01_g11680' => 'ccan', 'Cc02_g15610' => 'ccan', 'Cc05_g04350' => 'ccan', 'Cc09_g01580' => 'ccan', 'CDE01G0795' => 'cde', 'CDE02G2024' => 'cde', 'CDE02G2260' => 'cde', 'CDE02G4561' => 'cde', 'CDE05G2733' => 'cde', 'CDE05G3422' => 'cde', 'CDE06G2003' => 'cde', 'CDE08G0576' => 'cde', 'CDE09G0048' => 'cde', 'CDE11G0805' => 'cde', 'Cfa003644' => 'cfa', 'Cfa006290' => 'cfa', 'Cfa010080' => 'cfa', 'Cfa011376' => 'cfa', 'Cfa011576' => 'cfa', 'Cfa011577' => 'cfa', 'Cfa014389' => 'cfa', 'Ciclev10006044m.g' => 'ccl', 'Ciclev10006954m.g' => 'ccl', 'Ciclev10015131m.g' => 'ccl', 'Ciclev10015580m.g' => 'ccl', 'Ciclev10028359m.g' => 'ccl', 'Ciclev10028573m.g' => 'ccl', 'CiPaw.03G159300' => 'cil', 'CiPaw.04G115100' => 'cil', 'CiPaw.09G092800' => 'cil', 'CiPaw.10G071800' => 'cil', 'CiPaw.13G105800' => 'cil', 'CiPaw.13G141000' => 'cil', 'CiPaw.14G103400' => 'cil', 'ClCG01G012700' => 'cla', 'ClCG01G012720' => 'cla', 'ClCG01G021920' => 'cla', 'ClCG02G008870' => 'cla', 'ClCG02G020840' => 'cla', 'ClCG02G021930' => 'cla', 'COL.COLO4_19302' => 'col', 'COL.COLO4_25262' => 'col', 'COL.COLO4_31788' => 'col', 'Cpa.g.c34684' => 'cpa', 'Cpa.g.c36520.1' => 'cpa', 'Cpa.g.c45626' => 'cpa', 'Cpa.g.sc121.17' => 'cpa', 'Cpa.g.sc13.22' => 'cpa', 'Cpa.g.sc87.88' => 'cpa', 'Cre06.g261800' => 'cre', 'CsaV3_1G014500' => 'csa', 'CsaV3_1G014510' => 'csa', 'CsaV3_2G034880' => 'csa', 'CsaV3_6G014760' => 'csa', 'CsaV3_6G021500' => 'csa', 'CsaV3_6G048980' => 'csa', 'CSS0002511' => 'camsi', 'CSS0007556' => 'camsi', 'CSS0008532' => 'camsi', 'CSS0009709' => 'camsi', 'CSS0010486' => 'camsi', 'CSS0016768' => 'camsi', 'CSS0023512' => 'camsi', 'CSS0025341' => 'camsi', 'CSS0027999' => 'camsi', 'CSS0028944' => 'camsi', 'CSS0032292' => 'camsi', 'CSS0032464' => 'camsi', 'CSS0037153' => 'camsi', 'CSS0039256' => 'camsi', 'CSS0048392' => 'camsi', 'CSS0050458' => 'camsi', 'DCAR_004224' => 'dca', 'DCAR_006147' => 'dca', 'DCAR_006465' => 'dca', 'DCAR_008159' => 'dca', 'DCAR_012164' => 'dca', 'DCAR_019764' => 'dca', 'Dinv05418' => 'din', 'Dinv10839' => 'din', 'Dinv12521' => 'din', 'Dinv13900' => 'din', 'Dinv29426' => 'din', 'Duzib150G0263' => 'dzi', 'Duzib168G1178' => 'dzi', 'Duzib168G1924' => 'dzi', 'Duzib170G0299' => 'dzi', 'Duzib170G0813' => 'dzi', 'Duzib235G1128' => 'dzi', 'Duzib248G1060' => 'dzi', 'ECA232G1910' => 'eca', 'ECA233G4621' => 'eca', 'ECA238G1216' => 'eca', 'ECA238G1784' => 'eca', 'ECA248G1242' => 'eca', 'EL10Ac8g20071' => 'bvu', 'EL10Ac9g21086' => 'bvu', 'EL10Ac9g22407' => 'bvu', 'EL10Ac9g22412' => 'bvu', 'Eucgr.A01119' => 'egr', 'Eucgr.E04043' => 'egr', 'Eucgr.J00428' => 'egr', 'Eucgr.J00958' => 'egr', 'FAN11G3091' => 'fan', 'FAN11G3651' => 'fan', 'FAN16G2566' => 'fan', 'FAN21G3155' => 'fan', 'FAN21G3400' => 'fan', 'FAN21G3543' => 'fan', 'FAN25G0234' => 'fan', 'FAN25G1422' => 'fan', 'FAN25G3392' => 'fan', 'FvH4_3g01940' => 'fve', 'FvH4_3g29870' => 'fve', 'FvH4_3g33680' => 'fve', 'Glyma.09G004200' => 'gma', 'Glyma.11G151288' => 'gma', 'Glyma.11G189100' => 'gma', 'Glyma.12G072500' => 'gma', 'Glyma.12G085500' => 'gma', 'Glyma.12G181800' => 'gma', 'Glyma.12G193000' => 'gma', 'Glyma.13G309300' => 'gma', 'Glyma.13G319000' => 'gma', 'Glyma.17G012600' => 'gma', 'Gohir.A06G148600' => 'ghi', 'Gohir.A07G115800' => 'ghi', 'Gohir.A08G003600' => 'ghi', 'Gohir.A09G093300' => 'ghi', 'Gohir.A09G105400' => 'ghi', 'Gohir.A09G105500' => 'ghi', 'Gohir.D06G154600' => 'ghi', 'Gohir.D07G120200' => 'ghi', 'Gohir.D08G013900' => 'ghi', 'Gohir.D09G093100' => 'ghi', 'Gohir.D09G102200' => 'ghi', 'Gohir.D09G102300' => 'ghi', 'Gorai.001G129400' => 'gra', 'Gorai.004G008200' => 'gra', 'Gorai.006G109800' => 'gra', 'Gorai.006G119500' => 'gra', 'Gorai.006G121300' => 'gra', 'Gorai.010G180700' => 'gra', 'GSVIVG01012716001' => 'vvi', 'GSVIVG01025118001' => 'vvi', 'GSVIVG01030439001' => 'vvi', 'GSVIVG01031397001' => 'vvi', 'HanXRQChr01g0004201' => 'han', 'HanXRQChr02g0054941' => 'han', 'HanXRQChr05g0141811' => 'han', 'HanXRQChr07g0197751' => 'han', 'HanXRQChr11g0346691' => 'han', 'HanXRQChr13g0396971' => 'han', 'HanXRQChr14g0432951' => 'han', 'HanXRQChr14g0452001' => 'han', 'HanXRQChr15g0496681' => 'han', 'HanXRQChr17g0557491' => 'han', 'HanXRQChr17g0557501' => 'han', 'Haze_06809' => 'cav', 'Haze_12852' => 'cav', 'Haze_15850' => 'cav', 'Haze_23446' => 'cav', 'Haze_23942' => 'cav', 'Haze_23943' => 'cav', 'Hma1.2p1_0091F.1_g046450' => 'hma', 'Hma1.2p1_0128F.1_g059910' => 'hma', 'Hma1.2p1_0249F.1_g102260' => 'hma', 'Hma1.2p1_0453F.1_g156190' => 'hma', 'Hma1.2p1_0695F.1_g204380' => 'hma', 'Hma1.2p1_0749F.1_g212650' => 'hma', 'Hma1.2p1_2156F.1_g315420' => 'hma', 'Hma1.2p1_2686F.1_g326940' => 'hma', 'HPP92_006428' => 'vpl', 'HPP92_012069' => 'vpl', 'HPP92_014129' => 'vpl', 'HPP92_014133' => 'vpl', 'HPP92_017315' => 'vpl', 'HPP92_026445' => 'vpl', 'HPP92_026446' => 'vpl', 'Hund00774' => 'sun', 'Hund07682' => 'sun', 'Hund21413' => 'sun', 'Hund23462' => 'sun', 'Hund23463' => 'sun', 'Lalb_Chr03g0027911' => 'lal', 'Lalb_Chr13g0304271' => 'lal', 'Lalb_Chr19g0137471' => 'lal', 'Lalb_Chr22g0350651' => 'lal', 'Lalb_Chr24g0395151' => 'lal', 'Lj1A1231T40' => 'lonja', 'Lj1A221T48' => 'lonja', 'Lj1C924T12' => 'lonja', 'Lj2C993G6' => 'lonja', 'Lj3g0005790' => 'lja', 'Lj3g0015432' => 'lja', 'Lj3g0017722' => 'lja', 'Lj3g0018497' => 'lja', 'Lj4g0025071' => 'lja', 'Lsat_1_v5_gn_1_129680' => 'lsa', 'Lsat_1_v5_gn_2_25321' => 'lsa', 'Lsat_1_v5_gn_2_95461' => 'lsa', 'Lsat_1_v5_gn_4_159620' => 'lsa', 'Lsat_1_v5_gn_6_41301' => 'lsa', 'Lsat_1_v5_gn_6_74660' => 'lsa', 'Lsat_1_v5_gn_7_11520' => 'lsa', 'Lsat_1_v5_gn_9_67680' => 'lsa', 'Manes.04G008300' => 'mes', 'Manes.04G008400' => 'mes', 'Manes.04G026500' => 'mes', 'Manes.10G135300' => 'mes', 'Manes.11G157300' => 'mes', 'Manes.12G074000' => 'mes', 'Manes.16G006200' => 'mes', 'Manes.17G026400' => 'mes', 'Mapoly0024s0086' => 'mpo', 'Mapoly0024s0087' => 'mpo', 'Mapoly0071s0057' => 'mpo', 'Mapoly0204s0012' => 'mpo', 'MBI04_g37681_MAGBIO' => 'mbi', 'MBI05_g17779_MAGBIO' => 'mbi', 'MBI12_g31184_MAGBIO' => 'mbi', 'MBI17_g11083_MAGBIO' => 'mbi', 'MBI18_g03883_MAGBIO' => 'mbi', 'MBI18_g28940_MAGBIO' => 'mbi', 'MCO01G690' => 'mco', 'MD03G1109900' => 'mdo', 'MD03G1134800' => 'mdo', 'MD05G1348000' => 'mdo', 'MD10G1322400' => 'mdo', 'MD11G1123300' => 'mdo', 'MD11G1157600' => 'mdo', 'Medtr2g084875' => 'mtr', 'Medtr2g088130' => 'mtr', 'Medtr4g055310' => 'mtr', 'Medtr4g061070' => 'mtr', 'Medtr4g132250' => 'mtr', 'MELO3C004795.2' => 'cme', 'MELO3C004797.2' => 'cme', 'MELO3C007396.2' => 'cme', 'MELO3C019277.2' => 'cme', 'MELO3C021449.2' => 'cme', 'MELO3C025736.2' => 'cme', 'Migut.D02175' => 'egut', 'Migut.H01573' => 'egut', 'Migut.M01327' => 'egut', 'Migut.N02513' => 'egut', 'MSTRG.14638' => 'ama', 'MSTRG.18632' => 'ama', 'MSTRG.7203' => 'ama', 'Nitab4.5_0000533g0140' => 'nta', 'Nitab4.5_0000888g0150' => 'nta', 'Nitab4.5_0001453g0040' => 'nta', 'Nitab4.5_0002827g0090' => 'nta', 'Nitab4.5_0003082g0040' => 'nta', 'Nitab4.5_0007799g0040' => 'nta', 'Nitab4.5_0008983g0010' => 'nta', 'Nitab4.5_0009017g0020' => 'nta', 'Nn1g02132' => 'nnu', 'Nn1g03492' => 'nnu', 'Nn1g03493' => 'nnu', 'Nn1g03494' => 'nnu', 'Nn1g07164' => 'nnu', 'Nn1g07291' => 'nnu', 'Nn2g10655' => 'nnu', 'Nn2g11652' => 'nnu', 'Nn2g14008' => 'nnu', 'Nn3g17476' => 'nnu', 'Nn3g17477' => 'nnu', 'Nn4g22370' => 'nnu', 'Nn4g25255' => 'nnu', 'Nn5g27755' => 'nnu', 'Nn6g34260' => 'nnu', 'Nn6g35041' => 'nnu', 'Oeu005924.1' => 'oeu', 'Oeu008383.1' => 'oeu', 'Oeu014928.1' => 'oeu', 'Oeu019889.1' => 'oeu', 'Oeu022271.1' => 'oeu', 'Oeu025271.1' => 'oeu', 'Oeu036302.1' => 'oeu', 'Oeu044100.1' => 'oeu', 'Os01g0528300' => 'osa', 'Os03g0286200' => 'osa', 'Os04g0406600' => 'osa', 'Os07g0512000' => 'osa', 'Os07g0694600' => 'osa', 'Os08g0411000' => 'osa', 'Os09g0565700' => 'osa', 'Os09g0566050' => 'osa', 'Os10g0523700' => 'osa', 'Peaxi162Scf00002g00514' => 'pax', 'Peaxi162Scf00047g01817' => 'pax', 'Peaxi162Scf00114g00001' => 'pax', 'Peaxi162Scf00147g00613' => 'pax', 'Peaxi162Scf00389g00425' => 'pax', 'PGR042G1139' => 'pgr', 'PGR042G3273' => 'pgr', 'PGR102G2180' => 'pgr', 'PGR119G0234' => 'pgr', 'PGR119G0668' => 'pgr', 'PGSC0003DMG400007122' => 'stu', 'PGSC0003DMG400016478' => 'stu', 'PGSC0003DMG400025374' => 'stu', 'PGSC0003DMG400026536' => 'stu', 'Phvul.003G079600' => 'pvu', 'Phvul.005G115600' => 'pvu', 'Phvul.005G127100' => 'pvu', 'Phvul.006G149500' => 'pvu', 'Phvul.006G149600' => 'pvu', 'Phvul.011G071800' => 'pvu', 'Phvul.011G090400' => 'pvu', 'Potri.004G013400' => 'ptr', 'Potri.004G188100' => 'ptr', 'Potri.008G195500' => 'ptr', 'Potri.009G148800' => 'ptr', 'Potri.011G004700' => 'ptr', 'Pp3c17_22810' => 'ppa', 'Pp3c18_4480' => 'ppa', 'Pp3c19_13030' => 'ppa', 'Pp3c1_33620' => 'ppa', 'Pp3c2_9380' => 'ppa', 'PRCOL_00001023' => 'pco', 'Prupe.3G216300' => 'ppe', 'Prupe.4G019500' => 'ppe', 'Prupe.6G092500' => 'ppe', 'Prupe.6G119200' => 'ppe', 'Psat0s1945g0080' => 'psa', 'Psat0s4167g0040' => 'psa', 'Psat1g185800' => 'psa', 'Psat4g006440' => 'psa', 'Psat4g006480' => 'psa', 'Psat4g168120' => 'psa', 'Psat5g255680' => 'psa', 'Psat5g261760' => 'psa', 'Psat7g222120' => 'psa', 'PSO063G7252' => 'pso', 'PSO170G4778' => 'pso', 'PSO210G2249' => 'pso', 'PSO339G2411' => 'pso', 'PSO339G2457' => 'pso', 'PSO339G2854' => 'pso', 'PSO339G4288' => 'pso', 'PSO339G4615' => 'pso', 'PSO384G2796' => 'pso', 'PSO384G2940' => 'pso', 'PSO384G4227' => 'pso', 'PSO478G1425' => 'pso', 'PSO541G3863' => 'pso', 'PSO675G0507' => 'pso', 'PSO782G0338' => 'pso', 'PSO832G0644' => 'pso', 'QL01p013664' => 'qlo', 'QL01p036598' => 'qlo', 'QL05p072984' => 'qlo', 'QL08p005768' => 'qlo', 'QL08p032743' => 'qlo', 'QL93p0073_0439' => 'qlo', 'QL93p0073_0444' => 'qlo', 'RcHm_v2.0_Chr5g0002851' => 'rch', 'RcHm_v2.0_Chr5g0055201' => 'rch', 'RcHm_v2.0_Chr5g0061191' => 'rch', 'RcHm_v2.0_Chr7g0203231' => 'rch', 'Rhsim01G0208100' => 'rsi', 'Rhsim01G0208200' => 'rsi', 'Rhsim02G0106500' => 'rsi', 'Rhsim03G0107900' => 'rsi', 'Rhsim06G0163400' => 'rsi', 'Rhsim13G0105200' => 'rsi', 'Sabra04G0006300' => 'sbr', 'Sabra04G0127000' => 'sbr', 'Sabra08G0148700' => 'sbr', 'Sabra09G0117400' => 'sbr', 'SalBow1G3326' => 'sbo', 'SalBow3G3228' => 'sbo', 'SalBow6G1634' => 'sbo', 'SalBow6G3603' => 'sbo', 'SalBow6G5266' => 'sbo', 'SalBow7G2265' => 'sbo', 'SalBow8G0850' => 'sbo', 'SalBow8G2592' => 'sbo', 'Sc05g0009240' => 'sci', 'Sc12g0002300' => 'sci', 'Sc21g0000100' => 'sci', 'Sc21g0004720' => 'sci', 'Sed0002949' => 'sed', 'Sed0004114' => 'sed', 'Sed0004306' => 'sed', 'Sed0006172' => 'sed', 'Sed0008413' => 'sed', 'Sed0013809' => 'sed', 'Sed0019556' => 'sed', 'SEGI_03570' => 'sgi', 'SEGI_07859' => 'sgi', 'SEGI_15042' => 'sgi', 'SEGI_16263' => 'sgi', 'SEGI_16552' => 'sgi', 'SEGI_24331' => 'sgi', 'SEGI_27316' => 'sgi', 'SEGI_29521' => 'sgi', 'SEGI_41342' => 'sgi', 'SGA_v2.0_scaffold27G11617' => 'sas', 'SGA_v2.0_scaffold316G48428' => 'sas', 'SGA_v2.0_scaffold49G18261' => 'sas', 'SGA_v2.0_scaffold7G03831' => 'sas', 'SGA_v2.0_scaffold93G28359' => 'sas', 'SHI02210' => 'shi', 'SHI06028' => 'shi', 'SHI06321' => 'shi', 'SMO111G0012' => 'smo', 'SMO228G0080' => 'smo', 'SMO356G0756' => 'smo', 'Solyc02g080620.3' => 'sly', 'Solyc06g074530.1' => 'sly', 'Solyc11g066890.1' => 'sly', 'Solyc11g072520.3' => 'sly', 'Sopen02g025330' => 'spe', 'Sopen06g031000' => 'spe', 'Sopen09g008240' => 'spe', 'Sopen09g025210' => 'spe', 'Sopen11g026600' => 'spe', 'Sopen11g030170' => 'spe', 'Sp1g10420' => 'spa', 'Sp3g06570' => 'spa', 'Sp4g10660' => 'spa', 'Sp5g16460' => 'spa', 'Sp6g22710' => 'spa', 'TAR365G0112' => 'tar', 'TAR369G0717' => 'tar', 'TAR374G0976' => 'tar', 'TAR623G1128' => 'tar', 'TAR626G1937' => 'tar', 'TAR627G0123' => 'tar', 'TAR628G0305' => 'tar', 'TAR636G1176' => 'tar', 'TAR636G2442' => 'tar', 'THA.LOC104800556' => 'tha', 'THA.LOC104809501' => 'tha', 'THA.LOC104815126' => 'tha', 'THA.LOC104815732' => 'tha', 'THA.LOC104823528' => 'tha', 'Thecc.02G365600' => 'tca', 'Thecc.06G222300' => 'tca', 'Thecc.09G261800' => 'tca', 'Thecc.09G291400' => 'tca', 'Thhalv10003028m.g' => 'esa', 'Thhalv10007886m.g' => 'esa', 'Thhalv10016085m.g' => 'esa', 'Thhalv10016681m.g' => 'esa', 'Thhalv10020951m.g' => 'esa', 'TPR.G15598' => 'tpr', 'TPR.G29305' => 'tpr', 'TPR.G32395' => 'tpr', 'TPR.G36998' => 'tpr', 'TPR.G4227' => 'tpr', 'TWI18G1433' => 'twi', 'TWI31G0755' => 'twi', 'TWI38G0912' => 'twi', 'TWI75G1097' => 'twi', 'TWI75G1619' => 'twi', 'TWI79G1336' => 'twi', 'unitig_0.g943' => 'ugi', 'unitig_0.g944' => 'ugi', 'unitig_22.g6646' => 'ugi', 'unitig_37.g12681' => 'ugi', 'unitig_8.g3290' => 'ugi', 'vmacro03278' => 'vma', 'vmacro12197' => 'vma', 'vmacro14478' => 'vma', 'vmacro15787' => 'vma', 'vmacro15789' => 'vma', 'vmacro15790' => 'vma', 'vmacro15806' => 'vma', 'vmacro22907' => 'vma', 'vmacro22908' => 'vma', 'vmacro22909' => 'vma', 'vmacro23108' => 'vma', 'VMungo0540G0540' => 'vmu', 'VMungo0540G2468' => 'vmu', 'VMungo1080G0390' => 'vmu', 'VMungo1080G1165' => 'vmu', 'VMungo1127G0170' => 'vmu', 'VMungo1127G2099' => 'vmu', 'VMungo1215G3013' => 'vmu', 'Zm00001eb013110' => 'zma', 'Zm00001eb084260' => 'zma', 'Zm00001eb096110' => 'zma', 'Zm00001eb217510' => 'zma', 'Zm00001eb322550' => 'zma', 'Zm00001eb390770' => 'zma', 'Zm00001eb397170' => 'zma', 'Zm00001eb404610' => 'zma', 'Zm00001eb421790' => 'zma' ) $gf_id = 'HOM05D000911' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000911' ) $data_identifier = 'HOM05D000911' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 16, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 5, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 6, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 8, 'nnu' => (int) 16, 'oeu' => (int) 8, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 5, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 16, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421790' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000911', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27780' => 'bna', 'A03p35380' => 'bna', 'A04p21160' => 'bna', 'A05p40570' => 'bna', 'A06p26900' => 'bna', 'A08p33230' => 'bna', 'A09p65960' => 'bna', 'A10p18290' => 'bna', 'Aa31LG1G12990' => 'aar', 'Aa31LG1G2980' => 'aar', 'Aa31LG4G14320' => 'aar', 'Aa31LG7G11800' => 'aar', 'Aa31sc36G50' => 'aar', 'Aa31sc36G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3721' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5459' => 'aag', 'Actinidia03028' => 'ach', 'Actinidia03753' => 'ach', 'Actinidia04187' => 'ach', 'Actinidia05509' => 'ach', 'Actinidia24180' => 'ach', 'Actinidia26906' => 'ach', 'Actinidia37097' => 'ach', 'Actinidia38249' => 'ach', 'Ah.01g003470' => 'amhyb', 'Ah.01g004580' => 'amhyb', 'Ah.01g014850' => 'amhyb', 'Ah.01g016830' => 'amhyb', 'Ah.14g088000' => 'amhyb', 'AL1G22980' => 'aly', 'AL3G18990' => 'aly', 'AL4G22440' => 'aly', 'AL4G33180' => 'aly', 'AL5G22920' => 'aly', 'AL6G33660' => 'aly', 'AL8G20720' => 'aly', 'Aqoxy1G00935' => 'aox', 'Aqoxy1G02094' => 'aox', 'Aqoxy2G01239' => 'aox', 'Aqoxy4G01870' => 'aox', 'Aqoxy7G00450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.36ZVTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71EM27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5D6C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH3WRE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3NCM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RIM768' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YB5YRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z36GDV' => 'arhy', 'AT1G08250' => 'ath', 'AT1G11790' => 'ath', 'AT2G27820' => 'ath', 'AT3G07630' => 'ath', 'AT3G44720' => 'ath', 'AT5G22630' => 'ath', 'ATR0693G304' => 'atr', 'ATR0794G109' => 'atr', 'ATR0820G120' => 'atr', 'ATR1159G064' => 'atr', 'Atru.chr10.2239' => 'acertr', 'Atru.chr3.3371' => 'acertr', 'Atru.chr6.3202' => 'acertr', 'AUR62006499' => 'cqu', 'AUR62012718' => 'cqu', 'AUR62021938' => 'cqu', 'AUR62023932' => 'cqu', 'AUR62025034' => 'cqu', 'AUR62025035' => 'cqu', 'AUR62038307' => 'cqu', 'AUR62043466' => 'cqu', 'BcaB02g10748' => 'bca', 'BcaB03g13231' => 'bca', 'BcaB03g14689' => 'bca', 'BcaB05g22716' => 'bca', 'BcaB06g28172' => 'bca', 'BcaB08g36413' => 'bca', 'BcaC01g02186' => 'bca', 'BcaC01g04272' => 'bca', 'BcaC02g08080' => 'bca', 'BcaC02g08227' => 'bca', 'BcaC03g13901' => 'bca', 'BcaC04g19593' => 'bca', 'BcaC04g20874' => 'bca', 'BcaC05g29557' => 'bca', 'BcaC06g35505' => 'bca', 'BcaC07g41954' => 'bca', 'BcaC07g41955' => 'bca', 'BcaC07g41956' => 'bca', 'BcaC07g42519' => 'bca', 'BcaC07g42520' => 'bca', 'BcaC07g42523' => 'bca', 'BcaC07g42524' => 'bca', 'BcaC07g42525' => 'bca', 'BcaC08g47480' => 'bca', 'BcaC08g47481' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00530' => 'bna', 'BolC2t07178H' => 'bol', 'BolC3t16567H' => 'bol', 'BolC4t27234H' => 'bol', 'BolC5t29728H' => 'bol', 'BolC5t34622H' => 'bol', 'BolC6t40321H' => 'bol', 'BolC7t42028H' => 'bol', 'BolC8t49125H' => 'bol', 'BolC8t52538H' => 'bol', 'BolC8t52539H' => 'bol', 'BolC9t56681H' => 'bol', 'BolC9t58266H' => 'bol', 'BolSC21t60294H' => 'bol', 'BraA02t05670Z' => 'bra', 'BraA03t12716Z' => 'bra', 'BraA04t17685Z' => 'bra', 'BraA05t22788Z' => 'bra', 'BraA06t24032Z' => 'bra', 'BraA06t25625Z' => 'bra', 'BraA07t27930Z' => 'bra', 'BraA08t35242Z' => 'bra', 'BraA09t38609Z' => 'bra', 'BraA10t43905Z' => 'bra', 'C02p11060' => 'bna', 'C03p42990' => 'bna', 'C03p67310' => 'bna', 'C04p56990' => 'bna', 'C04p58660' => 'bna', 'C05p09890' => 'bna', 'C05p59680' => 'bna', 'C06p19830' => 'bna', 'C06p53040' => 'bna', 'C07p15230' => 'bna', 'C08p50070' => 'bna', 'C08p50090' => 'bna', 'C09p38330' => 'bna', 'C09p53940' => 'bna', 'CAN.G1014.1' => 'can', 'CAN.G644.30' => 'can', 'CAN.G84.47' => 'can', 'CAN.G919.8' => 'can', 'CANSAT54G0113' => 'cansat', 'CANSAT54G1286' => 'cansat', 'CANSAT64G1020' => 'cansat', 'CARHR008080' => 'chi', 'CARHR008090' => 'chi', 'CARHR012130' => 'chi', 'CARHR038390' => 'chi', 'CARHR082330' => 'chi', 'CARHR120520' => 'chi', 'CARHR151470' => 'chi', 'CARHR190950' => 'chi', 'Carub.0001s0760' => 'cru', 'Carub.0001s1146' => 'cru', 'Carub.0003s0721' => 'cru', 'Carub.0004s0858' => 'cru', 'Carub.0005s1040' => 'cru', 'Carub.0006s2035' => 'cru', 'Carub.0015s0005' => 'cru', 'Ca_01607_v3' => 'car', 'Ca_01677_v3' => 'car', 'Ca_06087_v3' => 'car', 'Ca_19238_v3' => 'car', 'Ca_19373_v3' => 'car', 'Ca_21079_v3' => 'car', 'CBR_g54016' => 'cbr', 'CBR_g54018' => 'cbr', 'CBR_g54020' => 'cbr', 'Cc01_g09780' => 'ccan', 'Cc01_g11680' => 'ccan', 'Cc02_g15610' => 'ccan', 'Cc05_g04350' => 'ccan', 'Cc09_g01580' => 'ccan', 'CDE01G0795' => 'cde', 'CDE02G2024' => 'cde', 'CDE02G2260' => 'cde', 'CDE02G4561' => 'cde', 'CDE05G2733' => 'cde', 'CDE05G3422' => 'cde', 'CDE06G2003' => 'cde', 'CDE08G0576' => 'cde', 'CDE09G0048' => 'cde', 'CDE11G0805' => 'cde', 'Cfa003644' => 'cfa', 'Cfa006290' => 'cfa', 'Cfa010080' => 'cfa', 'Cfa011376' => 'cfa', 'Cfa011576' => 'cfa', 'Cfa011577' => 'cfa', 'Cfa014389' => 'cfa', 'Ciclev10006044m.g' => 'ccl', 'Ciclev10006954m.g' => 'ccl', 'Ciclev10015131m.g' => 'ccl', 'Ciclev10015580m.g' => 'ccl', 'Ciclev10028359m.g' => 'ccl', 'Ciclev10028573m.g' => 'ccl', 'CiPaw.03G159300' => 'cil', 'CiPaw.04G115100' => 'cil', 'CiPaw.09G092800' => 'cil', 'CiPaw.10G071800' => 'cil', 'CiPaw.13G105800' => 'cil', 'CiPaw.13G141000' => 'cil', 'CiPaw.14G103400' => 'cil', 'ClCG01G012700' => 'cla', 'ClCG01G012720' => 'cla', 'ClCG01G021920' => 'cla', 'ClCG02G008870' => 'cla', 'ClCG02G020840' => 'cla', 'ClCG02G021930' => 'cla', 'COL.COLO4_19302' => 'col', 'COL.COLO4_25262' => 'col', 'COL.COLO4_31788' => 'col', 'Cpa.g.c34684' => 'cpa', 'Cpa.g.c36520.1' => 'cpa', 'Cpa.g.c45626' => 'cpa', 'Cpa.g.sc121.17' => 'cpa', 'Cpa.g.sc13.22' => 'cpa', 'Cpa.g.sc87.88' => 'cpa', 'Cre06.g261800' => 'cre', 'CsaV3_1G014500' => 'csa', 'CsaV3_1G014510' => 'csa', 'CsaV3_2G034880' => 'csa', 'CsaV3_6G014760' => 'csa', 'CsaV3_6G021500' => 'csa', 'CsaV3_6G048980' => 'csa', 'CSS0002511' => 'camsi', 'CSS0007556' => 'camsi', 'CSS0008532' => 'camsi', 'CSS0009709' => 'camsi', 'CSS0010486' => 'camsi', 'CSS0016768' => 'camsi', 'CSS0023512' => 'camsi', 'CSS0025341' => 'camsi', 'CSS0027999' => 'camsi', 'CSS0028944' => 'camsi', 'CSS0032292' => 'camsi', 'CSS0032464' => 'camsi', 'CSS0037153' => 'camsi', 'CSS0039256' => 'camsi', 'CSS0048392' => 'camsi', 'CSS0050458' => 'camsi', 'DCAR_004224' => 'dca', 'DCAR_006147' => 'dca', 'DCAR_006465' => 'dca', 'DCAR_008159' => 'dca', 'DCAR_012164' => 'dca', 'DCAR_019764' => 'dca', 'Dinv05418' => 'din', 'Dinv10839' => 'din', 'Dinv12521' => 'din', 'Dinv13900' => 'din', 'Dinv29426' => 'din', 'Duzib150G0263' => 'dzi', 'Duzib168G1178' => 'dzi', 'Duzib168G1924' => 'dzi', 'Duzib170G0299' => 'dzi', 'Duzib170G0813' => 'dzi', 'Duzib235G1128' => 'dzi', 'Duzib248G1060' => 'dzi', 'ECA232G1910' => 'eca', 'ECA233G4621' => 'eca', 'ECA238G1216' => 'eca', 'ECA238G1784' => 'eca', 'ECA248G1242' => 'eca', 'EL10Ac8g20071' => 'bvu', 'EL10Ac9g21086' => 'bvu', 'EL10Ac9g22407' => 'bvu', 'EL10Ac9g22412' => 'bvu', 'Eucgr.A01119' => 'egr', 'Eucgr.E04043' => 'egr', 'Eucgr.J00428' => 'egr', 'Eucgr.J00958' => 'egr', 'FAN11G3091' => 'fan', 'FAN11G3651' => 'fan', 'FAN16G2566' => 'fan', 'FAN21G3155' => 'fan', 'FAN21G3400' => 'fan', 'FAN21G3543' => 'fan', 'FAN25G0234' => 'fan', 'FAN25G1422' => 'fan', 'FAN25G3392' => 'fan', 'FvH4_3g01940' => 'fve', 'FvH4_3g29870' => 'fve', 'FvH4_3g33680' => 'fve', 'Glyma.09G004200' => 'gma', 'Glyma.11G151288' => 'gma', 'Glyma.11G189100' => 'gma', 'Glyma.12G072500' => 'gma', 'Glyma.12G085500' => 'gma', 'Glyma.12G181800' => 'gma', 'Glyma.12G193000' => 'gma', 'Glyma.13G309300' => 'gma', 'Glyma.13G319000' => 'gma', 'Glyma.17G012600' => 'gma', 'Gohir.A06G148600' => 'ghi', 'Gohir.A07G115800' => 'ghi', 'Gohir.A08G003600' => 'ghi', 'Gohir.A09G093300' => 'ghi', 'Gohir.A09G105400' => 'ghi', 'Gohir.A09G105500' => 'ghi', 'Gohir.D06G154600' => 'ghi', 'Gohir.D07G120200' => 'ghi', 'Gohir.D08G013900' => 'ghi', 'Gohir.D09G093100' => 'ghi', 'Gohir.D09G102200' => 'ghi', 'Gohir.D09G102300' => 'ghi', 'Gorai.001G129400' => 'gra', 'Gorai.004G008200' => 'gra', 'Gorai.006G109800' => 'gra', 'Gorai.006G119500' => 'gra', 'Gorai.006G121300' => 'gra', 'Gorai.010G180700' => 'gra', 'GSVIVG01012716001' => 'vvi', 'GSVIVG01025118001' => 'vvi', 'GSVIVG01030439001' => 'vvi', 'GSVIVG01031397001' => 'vvi', 'HanXRQChr01g0004201' => 'han', 'HanXRQChr02g0054941' => 'han', 'HanXRQChr05g0141811' => 'han', 'HanXRQChr07g0197751' => 'han', 'HanXRQChr11g0346691' => 'han', 'HanXRQChr13g0396971' => 'han', 'HanXRQChr14g0432951' => 'han', 'HanXRQChr14g0452001' => 'han', 'HanXRQChr15g0496681' => 'han', 'HanXRQChr17g0557491' => 'han', 'HanXRQChr17g0557501' => 'han', 'Haze_06809' => 'cav', 'Haze_12852' => 'cav', 'Haze_15850' => 'cav', 'Haze_23446' => 'cav', 'Haze_23942' => 'cav', 'Haze_23943' => 'cav', 'Hma1.2p1_0091F.1_g046450' => 'hma', 'Hma1.2p1_0128F.1_g059910' => 'hma', 'Hma1.2p1_0249F.1_g102260' => 'hma', 'Hma1.2p1_0453F.1_g156190' => 'hma', 'Hma1.2p1_0695F.1_g204380' => 'hma', 'Hma1.2p1_0749F.1_g212650' => 'hma', 'Hma1.2p1_2156F.1_g315420' => 'hma', 'Hma1.2p1_2686F.1_g326940' => 'hma', 'HPP92_006428' => 'vpl', 'HPP92_012069' => 'vpl', 'HPP92_014129' => 'vpl', 'HPP92_014133' => 'vpl', 'HPP92_017315' => 'vpl', 'HPP92_026445' => 'vpl', 'HPP92_026446' => 'vpl', 'Hund00774' => 'sun', 'Hund07682' => 'sun', 'Hund21413' => 'sun', 'Hund23462' => 'sun', 'Hund23463' => 'sun', 'Lalb_Chr03g0027911' => 'lal', 'Lalb_Chr13g0304271' => 'lal', 'Lalb_Chr19g0137471' => 'lal', 'Lalb_Chr22g0350651' => 'lal', 'Lalb_Chr24g0395151' => 'lal', 'Lj1A1231T40' => 'lonja', 'Lj1A221T48' => 'lonja', 'Lj1C924T12' => 'lonja', 'Lj2C993G6' => 'lonja', 'Lj3g0005790' => 'lja', 'Lj3g0015432' => 'lja', 'Lj3g0017722' => 'lja', 'Lj3g0018497' => 'lja', 'Lj4g0025071' => 'lja', 'Lsat_1_v5_gn_1_129680' => 'lsa', 'Lsat_1_v5_gn_2_25321' => 'lsa', 'Lsat_1_v5_gn_2_95461' => 'lsa', 'Lsat_1_v5_gn_4_159620' => 'lsa', 'Lsat_1_v5_gn_6_41301' => 'lsa', 'Lsat_1_v5_gn_6_74660' => 'lsa', 'Lsat_1_v5_gn_7_11520' => 'lsa', 'Lsat_1_v5_gn_9_67680' => 'lsa', 'Manes.04G008300' => 'mes', 'Manes.04G008400' => 'mes', 'Manes.04G026500' => 'mes', 'Manes.10G135300' => 'mes', 'Manes.11G157300' => 'mes', 'Manes.12G074000' => 'mes', 'Manes.16G006200' => 'mes', 'Manes.17G026400' => 'mes', 'Mapoly0024s0086' => 'mpo', 'Mapoly0024s0087' => 'mpo', 'Mapoly0071s0057' => 'mpo', 'Mapoly0204s0012' => 'mpo', 'MBI04_g37681_MAGBIO' => 'mbi', 'MBI05_g17779_MAGBIO' => 'mbi', 'MBI12_g31184_MAGBIO' => 'mbi', 'MBI17_g11083_MAGBIO' => 'mbi', 'MBI18_g03883_MAGBIO' => 'mbi', 'MBI18_g28940_MAGBIO' => 'mbi', 'MCO01G690' => 'mco', 'MD03G1109900' => 'mdo', 'MD03G1134800' => 'mdo', 'MD05G1348000' => 'mdo', 'MD10G1322400' => 'mdo', 'MD11G1123300' => 'mdo', 'MD11G1157600' => 'mdo', 'Medtr2g084875' => 'mtr', 'Medtr2g088130' => 'mtr', 'Medtr4g055310' => 'mtr', 'Medtr4g061070' => 'mtr', 'Medtr4g132250' => 'mtr', 'MELO3C004795.2' => 'cme', 'MELO3C004797.2' => 'cme', 'MELO3C007396.2' => 'cme', 'MELO3C019277.2' => 'cme', 'MELO3C021449.2' => 'cme', 'MELO3C025736.2' => 'cme', 'Migut.D02175' => 'egut', 'Migut.H01573' => 'egut', 'Migut.M01327' => 'egut', 'Migut.N02513' => 'egut', 'MSTRG.14638' => 'ama', 'MSTRG.18632' => 'ama', 'MSTRG.7203' => 'ama', 'Nitab4.5_0000533g0140' => 'nta', 'Nitab4.5_0000888g0150' => 'nta', 'Nitab4.5_0001453g0040' => 'nta', 'Nitab4.5_0002827g0090' => 'nta', 'Nitab4.5_0003082g0040' => 'nta', 'Nitab4.5_0007799g0040' => 'nta', 'Nitab4.5_0008983g0010' => 'nta', 'Nitab4.5_0009017g0020' => 'nta', 'Nn1g02132' => 'nnu', 'Nn1g03492' => 'nnu', 'Nn1g03493' => 'nnu', 'Nn1g03494' => 'nnu', 'Nn1g07164' => 'nnu', 'Nn1g07291' => 'nnu', 'Nn2g10655' => 'nnu', 'Nn2g11652' => 'nnu', 'Nn2g14008' => 'nnu', 'Nn3g17476' => 'nnu', 'Nn3g17477' => 'nnu', 'Nn4g22370' => 'nnu', 'Nn4g25255' => 'nnu', 'Nn5g27755' => 'nnu', 'Nn6g34260' => 'nnu', 'Nn6g35041' => 'nnu', 'Oeu005924.1' => 'oeu', 'Oeu008383.1' => 'oeu', 'Oeu014928.1' => 'oeu', 'Oeu019889.1' => 'oeu', 'Oeu022271.1' => 'oeu', 'Oeu025271.1' => 'oeu', 'Oeu036302.1' => 'oeu', 'Oeu044100.1' => 'oeu', 'Os01g0528300' => 'osa', 'Os03g0286200' => 'osa', 'Os04g0406600' => 'osa', 'Os07g0512000' => 'osa', 'Os07g0694600' => 'osa', 'Os08g0411000' => 'osa', 'Os09g0565700' => 'osa', 'Os09g0566050' => 'osa', 'Os10g0523700' => 'osa', 'Peaxi162Scf00002g00514' => 'pax', 'Peaxi162Scf00047g01817' => 'pax', 'Peaxi162Scf00114g00001' => 'pax', 'Peaxi162Scf00147g00613' => 'pax', 'Peaxi162Scf00389g00425' => 'pax', 'PGR042G1139' => 'pgr', 'PGR042G3273' => 'pgr', 'PGR102G2180' => 'pgr', 'PGR119G0234' => 'pgr', 'PGR119G0668' => 'pgr', 'PGSC0003DMG400007122' => 'stu', 'PGSC0003DMG400016478' => 'stu', 'PGSC0003DMG400025374' => 'stu', 'PGSC0003DMG400026536' => 'stu', 'Phvul.003G079600' => 'pvu', 'Phvul.005G115600' => 'pvu', 'Phvul.005G127100' => 'pvu', 'Phvul.006G149500' => 'pvu', 'Phvul.006G149600' => 'pvu', 'Phvul.011G071800' => 'pvu', 'Phvul.011G090400' => 'pvu', 'Potri.004G013400' => 'ptr', 'Potri.004G188100' => 'ptr', 'Potri.008G195500' => 'ptr', 'Potri.009G148800' => 'ptr', 'Potri.011G004700' => 'ptr', 'Pp3c17_22810' => 'ppa', 'Pp3c18_4480' => 'ppa', 'Pp3c19_13030' => 'ppa', 'Pp3c1_33620' => 'ppa', 'Pp3c2_9380' => 'ppa', 'PRCOL_00001023' => 'pco', 'Prupe.3G216300' => 'ppe', 'Prupe.4G019500' => 'ppe', 'Prupe.6G092500' => 'ppe', 'Prupe.6G119200' => 'ppe', 'Psat0s1945g0080' => 'psa', 'Psat0s4167g0040' => 'psa', 'Psat1g185800' => 'psa', 'Psat4g006440' => 'psa', 'Psat4g006480' => 'psa', 'Psat4g168120' => 'psa', 'Psat5g255680' => 'psa', 'Psat5g261760' => 'psa', 'Psat7g222120' => 'psa', 'PSO063G7252' => 'pso', 'PSO170G4778' => 'pso', 'PSO210G2249' => 'pso', 'PSO339G2411' => 'pso', 'PSO339G2457' => 'pso', 'PSO339G2854' => 'pso', 'PSO339G4288' => 'pso', 'PSO339G4615' => 'pso', 'PSO384G2796' => 'pso', 'PSO384G2940' => 'pso', 'PSO384G4227' => 'pso', 'PSO478G1425' => 'pso', 'PSO541G3863' => 'pso', 'PSO675G0507' => 'pso', 'PSO782G0338' => 'pso', 'PSO832G0644' => 'pso', 'QL01p013664' => 'qlo', 'QL01p036598' => 'qlo', 'QL05p072984' => 'qlo', 'QL08p005768' => 'qlo', 'QL08p032743' => 'qlo', 'QL93p0073_0439' => 'qlo', 'QL93p0073_0444' => 'qlo', 'RcHm_v2.0_Chr5g0002851' => 'rch', 'RcHm_v2.0_Chr5g0055201' => 'rch', 'RcHm_v2.0_Chr5g0061191' => 'rch', 'RcHm_v2.0_Chr7g0203231' => 'rch', 'Rhsim01G0208100' => 'rsi', 'Rhsim01G0208200' => 'rsi', 'Rhsim02G0106500' => 'rsi', 'Rhsim03G0107900' => 'rsi', 'Rhsim06G0163400' => 'rsi', 'Rhsim13G0105200' => 'rsi', 'Sabra04G0006300' => 'sbr', 'Sabra04G0127000' => 'sbr', 'Sabra08G0148700' => 'sbr', 'Sabra09G0117400' => 'sbr', 'SalBow1G3326' => 'sbo', 'SalBow3G3228' => 'sbo', 'SalBow6G1634' => 'sbo', 'SalBow6G3603' => 'sbo', 'SalBow6G5266' => 'sbo', 'SalBow7G2265' => 'sbo', 'SalBow8G0850' => 'sbo', 'SalBow8G2592' => 'sbo', 'Sc05g0009240' => 'sci', 'Sc12g0002300' => 'sci', 'Sc21g0000100' => 'sci', 'Sc21g0004720' => 'sci', 'Sed0002949' => 'sed', 'Sed0004114' => 'sed', 'Sed0004306' => 'sed', 'Sed0006172' => 'sed', 'Sed0008413' => 'sed', 'Sed0013809' => 'sed', 'Sed0019556' => 'sed', 'SEGI_03570' => 'sgi', 'SEGI_07859' => 'sgi', 'SEGI_15042' => 'sgi', 'SEGI_16263' => 'sgi', 'SEGI_16552' => 'sgi', 'SEGI_24331' => 'sgi', 'SEGI_27316' => 'sgi', 'SEGI_29521' => 'sgi', 'SEGI_41342' => 'sgi', 'SGA_v2.0_scaffold27G11617' => 'sas', 'SGA_v2.0_scaffold316G48428' => 'sas', 'SGA_v2.0_scaffold49G18261' => 'sas', 'SGA_v2.0_scaffold7G03831' => 'sas', 'SGA_v2.0_scaffold93G28359' => 'sas', 'SHI02210' => 'shi', 'SHI06028' => 'shi', 'SHI06321' => 'shi', 'SMO111G0012' => 'smo', 'SMO228G0080' => 'smo', 'SMO356G0756' => 'smo', 'Solyc02g080620.3' => 'sly', 'Solyc06g074530.1' => 'sly', 'Solyc11g066890.1' => 'sly', 'Solyc11g072520.3' => 'sly', 'Sopen02g025330' => 'spe', 'Sopen06g031000' => 'spe', 'Sopen09g008240' => 'spe', 'Sopen09g025210' => 'spe', 'Sopen11g026600' => 'spe', 'Sopen11g030170' => 'spe', 'Sp1g10420' => 'spa', 'Sp3g06570' => 'spa', 'Sp4g10660' => 'spa', 'Sp5g16460' => 'spa', 'Sp6g22710' => 'spa', 'TAR365G0112' => 'tar', 'TAR369G0717' => 'tar', 'TAR374G0976' => 'tar', 'TAR623G1128' => 'tar', 'TAR626G1937' => 'tar', 'TAR627G0123' => 'tar', 'TAR628G0305' => 'tar', 'TAR636G1176' => 'tar', 'TAR636G2442' => 'tar', 'THA.LOC104800556' => 'tha', 'THA.LOC104809501' => 'tha', 'THA.LOC104815126' => 'tha', 'THA.LOC104815732' => 'tha', 'THA.LOC104823528' => 'tha', 'Thecc.02G365600' => 'tca', 'Thecc.06G222300' => 'tca', 'Thecc.09G261800' => 'tca', 'Thecc.09G291400' => 'tca', 'Thhalv10003028m.g' => 'esa', 'Thhalv10007886m.g' => 'esa', 'Thhalv10016085m.g' => 'esa', 'Thhalv10016681m.g' => 'esa', 'Thhalv10020951m.g' => 'esa', 'TPR.G15598' => 'tpr', 'TPR.G29305' => 'tpr', 'TPR.G32395' => 'tpr', 'TPR.G36998' => 'tpr', 'TPR.G4227' => 'tpr', 'TWI18G1433' => 'twi', 'TWI31G0755' => 'twi', 'TWI38G0912' => 'twi', 'TWI75G1097' => 'twi', 'TWI75G1619' => 'twi', 'TWI79G1336' => 'twi', 'unitig_0.g943' => 'ugi', 'unitig_0.g944' => 'ugi', 'unitig_22.g6646' => 'ugi', 'unitig_37.g12681' => 'ugi', 'unitig_8.g3290' => 'ugi', 'vmacro03278' => 'vma', 'vmacro12197' => 'vma', 'vmacro14478' => 'vma', 'vmacro15787' => 'vma', 'vmacro15789' => 'vma', 'vmacro15790' => 'vma', 'vmacro15806' => 'vma', 'vmacro22907' => 'vma', 'vmacro22908' => 'vma', 'vmacro22909' => 'vma', 'vmacro23108' => 'vma', 'VMungo0540G0540' => 'vmu', 'VMungo0540G2468' => 'vmu', 'VMungo1080G0390' => 'vmu', 'VMungo1080G1165' => 'vmu', 'VMungo1127G0170' => 'vmu', 'VMungo1127G2099' => 'vmu', 'VMungo1215G3013' => 'vmu', 'Zm00001eb013110' => 'zma', 'Zm00001eb084260' => 'zma', 'Zm00001eb096110' => 'zma', 'Zm00001eb217510' => 'zma', 'Zm00001eb322550' => 'zma', 'Zm00001eb390770' => 'zma', 'Zm00001eb397170' => 'zma', 'Zm00001eb404610' => 'zma', 'Zm00001eb421790' => 'zma' ), 'gf_id' => 'HOM05D000911', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000911' ), 'data_identifier' => 'HOM05D000911', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000911', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27780' => 'bna', 'A03p35380' => 'bna', 'A04p21160' => 'bna', 'A05p40570' => 'bna', 'A06p26900' => 'bna', 'A08p33230' => 'bna', 'A09p65960' => 'bna', 'A10p18290' => 'bna', 'Aa31LG1G12990' => 'aar', 'Aa31LG1G2980' => 'aar', 'Aa31LG4G14320' => 'aar', 'Aa31LG7G11800' => 'aar', 'Aa31sc36G50' => 'aar', 'Aa31sc36G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3721' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5459' => 'aag', 'Actinidia03028' => 'ach', 'Actinidia03753' => 'ach', 'Actinidia04187' => 'ach', 'Actinidia05509' => 'ach', 'Actinidia24180' => 'ach', 'Actinidia26906' => 'ach', 'Actinidia37097' => 'ach', 'Actinidia38249' => 'ach', 'Ah.01g003470' => 'amhyb', 'Ah.01g004580' => 'amhyb', 'Ah.01g014850' => 'amhyb', 'Ah.01g016830' => 'amhyb', 'Ah.14g088000' => 'amhyb', 'AL1G22980' => 'aly', 'AL3G18990' => 'aly', 'AL4G22440' => 'aly', 'AL4G33180' => 'aly', 'AL5G22920' => 'aly', 'AL6G33660' => 'aly', 'AL8G20720' => 'aly', 'Aqoxy1G00935' => 'aox', 'Aqoxy1G02094' => 'aox', 'Aqoxy2G01239' => 'aox', 'Aqoxy4G01870' => 'aox', 'Aqoxy7G00450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.36ZVTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71EM27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5D6C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH3WRE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3NCM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RIM768' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YB5YRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z36GDV' => 'arhy', 'AT1G08250' => 'ath', 'AT1G11790' => 'ath', 'AT2G27820' => 'ath', 'AT3G07630' => 'ath', 'AT3G44720' => 'ath', 'AT5G22630' => 'ath', 'ATR0693G304' => 'atr', 'ATR0794G109' => 'atr', 'ATR0820G120' => 'atr', 'ATR1159G064' => 'atr', 'Atru.chr10.2239' => 'acertr', 'Atru.chr3.3371' => 'acertr', 'Atru.chr6.3202' => 'acertr', 'AUR62006499' => 'cqu', 'AUR62012718' => 'cqu', 'AUR62021938' => 'cqu', 'AUR62023932' => 'cqu', 'AUR62025034' => 'cqu', 'AUR62025035' => 'cqu', 'AUR62038307' => 'cqu', 'AUR62043466' => 'cqu', 'BcaB02g10748' => 'bca', 'BcaB03g13231' => 'bca', 'BcaB03g14689' => 'bca', 'BcaB05g22716' => 'bca', 'BcaB06g28172' => 'bca', 'BcaB08g36413' => 'bca', 'BcaC01g02186' => 'bca', 'BcaC01g04272' => 'bca', 'BcaC02g08080' => 'bca', 'BcaC02g08227' => 'bca', 'BcaC03g13901' => 'bca', 'BcaC04g19593' => 'bca', 'BcaC04g20874' => 'bca', 'BcaC05g29557' => 'bca', 'BcaC06g35505' => 'bca', 'BcaC07g41954' => 'bca', 'BcaC07g41955' => 'bca', 'BcaC07g41956' => 'bca', 'BcaC07g42519' => 'bca', 'BcaC07g42520' => 'bca', 'BcaC07g42523' => 'bca', 'BcaC07g42524' => 'bca', 'BcaC07g42525' => 'bca', 'BcaC08g47480' => 'bca', 'BcaC08g47481' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00530' => 'bna', 'BolC2t07178H' => 'bol', 'BolC3t16567H' => 'bol', 'BolC4t27234H' => 'bol', 'BolC5t29728H' => 'bol', 'BolC5t34622H' => 'bol', 'BolC6t40321H' => 'bol', 'BolC7t42028H' => 'bol', 'BolC8t49125H' => 'bol', 'BolC8t52538H' => 'bol', 'BolC8t52539H' => 'bol', 'BolC9t56681H' => 'bol', 'BolC9t58266H' => 'bol', 'BolSC21t60294H' => 'bol', 'BraA02t05670Z' => 'bra', 'BraA03t12716Z' => 'bra', 'BraA04t17685Z' => 'bra', 'BraA05t22788Z' => 'bra', 'BraA06t24032Z' => 'bra', 'BraA06t25625Z' => 'bra', 'BraA07t27930Z' => 'bra', 'BraA08t35242Z' => 'bra', 'BraA09t38609Z' => 'bra', 'BraA10t43905Z' => 'bra', 'C02p11060' => 'bna', 'C03p42990' => 'bna', 'C03p67310' => 'bna', 'C04p56990' => 'bna', 'C04p58660' => 'bna', 'C05p09890' => 'bna', 'C05p59680' => 'bna', 'C06p19830' => 'bna', 'C06p53040' => 'bna', 'C07p15230' => 'bna', 'C08p50070' => 'bna', 'C08p50090' => 'bna', 'C09p38330' => 'bna', 'C09p53940' => 'bna', 'CAN.G1014.1' => 'can', 'CAN.G644.30' => 'can', 'CAN.G84.47' => 'can', 'CAN.G919.8' => 'can', 'CANSAT54G0113' => 'cansat', 'CANSAT54G1286' => 'cansat', 'CANSAT64G1020' => 'cansat', 'CARHR008080' => 'chi', 'CARHR008090' => 'chi', 'CARHR012130' => 'chi', 'CARHR038390' => 'chi', 'CARHR082330' => 'chi', 'CARHR120520' => 'chi', 'CARHR151470' => 'chi', 'CARHR190950' => 'chi', 'Carub.0001s0760' => 'cru', 'Carub.0001s1146' => 'cru', 'Carub.0003s0721' => 'cru', 'Carub.0004s0858' => 'cru', 'Carub.0005s1040' => 'cru', 'Carub.0006s2035' => 'cru', 'Carub.0015s0005' => 'cru', 'Ca_01607_v3' => 'car', 'Ca_01677_v3' => 'car', 'Ca_06087_v3' => 'car', 'Ca_19238_v3' => 'car', 'Ca_19373_v3' => 'car', 'Ca_21079_v3' => 'car', 'CBR_g54016' => 'cbr', 'CBR_g54018' => 'cbr', 'CBR_g54020' => 'cbr', 'Cc01_g09780' => 'ccan', 'Cc01_g11680' => 'ccan', 'Cc02_g15610' => 'ccan', 'Cc05_g04350' => 'ccan', 'Cc09_g01580' => 'ccan', 'CDE01G0795' => 'cde', 'CDE02G2024' => 'cde', 'CDE02G2260' => 'cde', 'CDE02G4561' => 'cde', 'CDE05G2733' => 'cde', 'CDE05G3422' => 'cde', 'CDE06G2003' => 'cde', 'CDE08G0576' => 'cde', 'CDE09G0048' => 'cde', 'CDE11G0805' => 'cde', 'Cfa003644' => 'cfa', 'Cfa006290' => 'cfa', 'Cfa010080' => 'cfa', 'Cfa011376' => 'cfa', 'Cfa011576' => 'cfa', 'Cfa011577' => 'cfa', 'Cfa014389' => 'cfa', 'Ciclev10006044m.g' => 'ccl', 'Ciclev10006954m.g' => 'ccl', 'Ciclev10015131m.g' => 'ccl', 'Ciclev10015580m.g' => 'ccl', 'Ciclev10028359m.g' => 'ccl', 'Ciclev10028573m.g' => 'ccl', 'CiPaw.03G159300' => 'cil', 'CiPaw.04G115100' => 'cil', 'CiPaw.09G092800' => 'cil', 'CiPaw.10G071800' => 'cil', 'CiPaw.13G105800' => 'cil', 'CiPaw.13G141000' => 'cil', 'CiPaw.14G103400' => 'cil', 'ClCG01G012700' => 'cla', 'ClCG01G012720' => 'cla', 'ClCG01G021920' => 'cla', 'ClCG02G008870' => 'cla', 'ClCG02G020840' => 'cla', 'ClCG02G021930' => 'cla', 'COL.COLO4_19302' => 'col', 'COL.COLO4_25262' => 'col', 'COL.COLO4_31788' => 'col', 'Cpa.g.c34684' => 'cpa', 'Cpa.g.c36520.1' => 'cpa', 'Cpa.g.c45626' => 'cpa', 'Cpa.g.sc121.17' => 'cpa', 'Cpa.g.sc13.22' => 'cpa', 'Cpa.g.sc87.88' => 'cpa', 'Cre06.g261800' => 'cre', 'CsaV3_1G014500' => 'csa', 'CsaV3_1G014510' => 'csa', 'CsaV3_2G034880' => 'csa', 'CsaV3_6G014760' => 'csa', 'CsaV3_6G021500' => 'csa', 'CsaV3_6G048980' => 'csa', 'CSS0002511' => 'camsi', 'CSS0007556' => 'camsi', 'CSS0008532' => 'camsi', 'CSS0009709' => 'camsi', 'CSS0010486' => 'camsi', 'CSS0016768' => 'camsi', 'CSS0023512' => 'camsi', 'CSS0025341' => 'camsi', 'CSS0027999' => 'camsi', 'CSS0028944' => 'camsi', 'CSS0032292' => 'camsi', 'CSS0032464' => 'camsi', 'CSS0037153' => 'camsi', 'CSS0039256' => 'camsi', 'CSS0048392' => 'camsi', 'CSS0050458' => 'camsi', 'DCAR_004224' => 'dca', 'DCAR_006147' => 'dca', 'DCAR_006465' => 'dca', 'DCAR_008159' => 'dca', 'DCAR_012164' => 'dca', 'DCAR_019764' => 'dca', 'Dinv05418' => 'din', 'Dinv10839' => 'din', 'Dinv12521' => 'din', 'Dinv13900' => 'din', 'Dinv29426' => 'din', 'Duzib150G0263' => 'dzi', 'Duzib168G1178' => 'dzi', 'Duzib168G1924' => 'dzi', 'Duzib170G0299' => 'dzi', 'Duzib170G0813' => 'dzi', 'Duzib235G1128' => 'dzi', 'Duzib248G1060' => 'dzi', 'ECA232G1910' => 'eca', 'ECA233G4621' => 'eca', 'ECA238G1216' => 'eca', 'ECA238G1784' => 'eca', 'ECA248G1242' => 'eca', 'EL10Ac8g20071' => 'bvu', 'EL10Ac9g21086' => 'bvu', 'EL10Ac9g22407' => 'bvu', 'EL10Ac9g22412' => 'bvu', 'Eucgr.A01119' => 'egr', 'Eucgr.E04043' => 'egr', 'Eucgr.J00428' => 'egr', 'Eucgr.J00958' => 'egr', 'FAN11G3091' => 'fan', 'FAN11G3651' => 'fan', 'FAN16G2566' => 'fan', 'FAN21G3155' => 'fan', 'FAN21G3400' => 'fan', 'FAN21G3543' => 'fan', 'FAN25G0234' => 'fan', 'FAN25G1422' => 'fan', 'FAN25G3392' => 'fan', 'FvH4_3g01940' => 'fve', 'FvH4_3g29870' => 'fve', 'FvH4_3g33680' => 'fve', 'Glyma.09G004200' => 'gma', 'Glyma.11G151288' => 'gma', 'Glyma.11G189100' => 'gma', 'Glyma.12G072500' => 'gma', 'Glyma.12G085500' => 'gma', 'Glyma.12G181800' => 'gma', 'Glyma.12G193000' => 'gma', 'Glyma.13G309300' => 'gma', 'Glyma.13G319000' => 'gma', 'Glyma.17G012600' => 'gma', 'Gohir.A06G148600' => 'ghi', 'Gohir.A07G115800' => 'ghi', 'Gohir.A08G003600' => 'ghi', 'Gohir.A09G093300' => 'ghi', 'Gohir.A09G105400' => 'ghi', 'Gohir.A09G105500' => 'ghi', 'Gohir.D06G154600' => 'ghi', 'Gohir.D07G120200' => 'ghi', 'Gohir.D08G013900' => 'ghi', 'Gohir.D09G093100' => 'ghi', 'Gohir.D09G102200' => 'ghi', 'Gohir.D09G102300' => 'ghi', 'Gorai.001G129400' => 'gra', 'Gorai.004G008200' => 'gra', 'Gorai.006G109800' => 'gra', 'Gorai.006G119500' => 'gra', 'Gorai.006G121300' => 'gra', 'Gorai.010G180700' => 'gra', 'GSVIVG01012716001' => 'vvi', 'GSVIVG01025118001' => 'vvi', 'GSVIVG01030439001' => 'vvi', 'GSVIVG01031397001' => 'vvi', 'HanXRQChr01g0004201' => 'han', 'HanXRQChr02g0054941' => 'han', 'HanXRQChr05g0141811' => 'han', 'HanXRQChr07g0197751' => 'han', 'HanXRQChr11g0346691' => 'han', 'HanXRQChr13g0396971' => 'han', 'HanXRQChr14g0432951' => 'han', 'HanXRQChr14g0452001' => 'han', 'HanXRQChr15g0496681' => 'han', 'HanXRQChr17g0557491' => 'han', 'HanXRQChr17g0557501' => 'han', 'Haze_06809' => 'cav', 'Haze_12852' => 'cav', 'Haze_15850' => 'cav', 'Haze_23446' => 'cav', 'Haze_23942' => 'cav', 'Haze_23943' => 'cav', 'Hma1.2p1_0091F.1_g046450' => 'hma', 'Hma1.2p1_0128F.1_g059910' => 'hma', 'Hma1.2p1_0249F.1_g102260' => 'hma', 'Hma1.2p1_0453F.1_g156190' => 'hma', 'Hma1.2p1_0695F.1_g204380' => 'hma', 'Hma1.2p1_0749F.1_g212650' => 'hma', 'Hma1.2p1_2156F.1_g315420' => 'hma', 'Hma1.2p1_2686F.1_g326940' => 'hma', 'HPP92_006428' => 'vpl', 'HPP92_012069' => 'vpl', 'HPP92_014129' => 'vpl', 'HPP92_014133' => 'vpl', 'HPP92_017315' => 'vpl', 'HPP92_026445' => 'vpl', 'HPP92_026446' => 'vpl', 'Hund00774' => 'sun', 'Hund07682' => 'sun', 'Hund21413' => 'sun', 'Hund23462' => 'sun', 'Hund23463' => 'sun', 'Lalb_Chr03g0027911' => 'lal', 'Lalb_Chr13g0304271' => 'lal', 'Lalb_Chr19g0137471' => 'lal', 'Lalb_Chr22g0350651' => 'lal', 'Lalb_Chr24g0395151' => 'lal', 'Lj1A1231T40' => 'lonja', 'Lj1A221T48' => 'lonja', 'Lj1C924T12' => 'lonja', 'Lj2C993G6' => 'lonja', 'Lj3g0005790' => 'lja', 'Lj3g0015432' => 'lja', 'Lj3g0017722' => 'lja', 'Lj3g0018497' => 'lja', 'Lj4g0025071' => 'lja', 'Lsat_1_v5_gn_1_129680' => 'lsa', 'Lsat_1_v5_gn_2_25321' => 'lsa', 'Lsat_1_v5_gn_2_95461' => 'lsa', 'Lsat_1_v5_gn_4_159620' => 'lsa', 'Lsat_1_v5_gn_6_41301' => 'lsa', 'Lsat_1_v5_gn_6_74660' => 'lsa', 'Lsat_1_v5_gn_7_11520' => 'lsa', 'Lsat_1_v5_gn_9_67680' => 'lsa', 'Manes.04G008300' => 'mes', 'Manes.04G008400' => 'mes', 'Manes.04G026500' => 'mes', 'Manes.10G135300' => 'mes', 'Manes.11G157300' => 'mes', 'Manes.12G074000' => 'mes', 'Manes.16G006200' => 'mes', 'Manes.17G026400' => 'mes', 'Mapoly0024s0086' => 'mpo', 'Mapoly0024s0087' => 'mpo', 'Mapoly0071s0057' => 'mpo', 'Mapoly0204s0012' => 'mpo', 'MBI04_g37681_MAGBIO' => 'mbi', 'MBI05_g17779_MAGBIO' => 'mbi', 'MBI12_g31184_MAGBIO' => 'mbi', 'MBI17_g11083_MAGBIO' => 'mbi', 'MBI18_g03883_MAGBIO' => 'mbi', 'MBI18_g28940_MAGBIO' => 'mbi', 'MCO01G690' => 'mco', 'MD03G1109900' => 'mdo', 'MD03G1134800' => 'mdo', 'MD05G1348000' => 'mdo', 'MD10G1322400' => 'mdo', 'MD11G1123300' => 'mdo', 'MD11G1157600' => 'mdo', 'Medtr2g084875' => 'mtr', 'Medtr2g088130' => 'mtr', 'Medtr4g055310' => 'mtr', 'Medtr4g061070' => 'mtr', 'Medtr4g132250' => 'mtr', 'MELO3C004795.2' => 'cme', 'MELO3C004797.2' => 'cme', 'MELO3C007396.2' => 'cme', 'MELO3C019277.2' => 'cme', 'MELO3C021449.2' => 'cme', 'MELO3C025736.2' => 'cme', 'Migut.D02175' => 'egut', 'Migut.H01573' => 'egut', 'Migut.M01327' => 'egut', 'Migut.N02513' => 'egut', 'MSTRG.14638' => 'ama', 'MSTRG.18632' => 'ama', 'MSTRG.7203' => 'ama', 'Nitab4.5_0000533g0140' => 'nta', 'Nitab4.5_0000888g0150' => 'nta', 'Nitab4.5_0001453g0040' => 'nta', 'Nitab4.5_0002827g0090' => 'nta', 'Nitab4.5_0003082g0040' => 'nta', 'Nitab4.5_0007799g0040' => 'nta', 'Nitab4.5_0008983g0010' => 'nta', 'Nitab4.5_0009017g0020' => 'nta', 'Nn1g02132' => 'nnu', 'Nn1g03492' => 'nnu', 'Nn1g03493' => 'nnu', 'Nn1g03494' => 'nnu', 'Nn1g07164' => 'nnu', 'Nn1g07291' => 'nnu', 'Nn2g10655' => 'nnu', 'Nn2g11652' => 'nnu', 'Nn2g14008' => 'nnu', 'Nn3g17476' => 'nnu', 'Nn3g17477' => 'nnu', 'Nn4g22370' => 'nnu', 'Nn4g25255' => 'nnu', 'Nn5g27755' => 'nnu', 'Nn6g34260' => 'nnu', 'Nn6g35041' => 'nnu', 'Oeu005924.1' => 'oeu', 'Oeu008383.1' => 'oeu', 'Oeu014928.1' => 'oeu', 'Oeu019889.1' => 'oeu', 'Oeu022271.1' => 'oeu', 'Oeu025271.1' => 'oeu', 'Oeu036302.1' => 'oeu', 'Oeu044100.1' => 'oeu', 'Os01g0528300' => 'osa', 'Os03g0286200' => 'osa', 'Os04g0406600' => 'osa', 'Os07g0512000' => 'osa', 'Os07g0694600' => 'osa', 'Os08g0411000' => 'osa', 'Os09g0565700' => 'osa', 'Os09g0566050' => 'osa', 'Os10g0523700' => 'osa', 'Peaxi162Scf00002g00514' => 'pax', 'Peaxi162Scf00047g01817' => 'pax', 'Peaxi162Scf00114g00001' => 'pax', 'Peaxi162Scf00147g00613' => 'pax', 'Peaxi162Scf00389g00425' => 'pax', 'PGR042G1139' => 'pgr', 'PGR042G3273' => 'pgr', 'PGR102G2180' => 'pgr', 'PGR119G0234' => 'pgr', 'PGR119G0668' => 'pgr', 'PGSC0003DMG400007122' => 'stu', 'PGSC0003DMG400016478' => 'stu', 'PGSC0003DMG400025374' => 'stu', 'PGSC0003DMG400026536' => 'stu', 'Phvul.003G079600' => 'pvu', 'Phvul.005G115600' => 'pvu', 'Phvul.005G127100' => 'pvu', 'Phvul.006G149500' => 'pvu', 'Phvul.006G149600' => 'pvu', 'Phvul.011G071800' => 'pvu', 'Phvul.011G090400' => 'pvu', 'Potri.004G013400' => 'ptr', 'Potri.004G188100' => 'ptr', 'Potri.008G195500' => 'ptr', 'Potri.009G148800' => 'ptr', 'Potri.011G004700' => 'ptr', 'Pp3c17_22810' => 'ppa', 'Pp3c18_4480' => 'ppa', 'Pp3c19_13030' => 'ppa', 'Pp3c1_33620' => 'ppa', 'Pp3c2_9380' => 'ppa', 'PRCOL_00001023' => 'pco', 'Prupe.3G216300' => 'ppe', 'Prupe.4G019500' => 'ppe', 'Prupe.6G092500' => 'ppe', 'Prupe.6G119200' => 'ppe', 'Psat0s1945g0080' => 'psa', 'Psat0s4167g0040' => 'psa', 'Psat1g185800' => 'psa', 'Psat4g006440' => 'psa', 'Psat4g006480' => 'psa', 'Psat4g168120' => 'psa', 'Psat5g255680' => 'psa', 'Psat5g261760' => 'psa', 'Psat7g222120' => 'psa', 'PSO063G7252' => 'pso', 'PSO170G4778' => 'pso', 'PSO210G2249' => 'pso', 'PSO339G2411' => 'pso', 'PSO339G2457' => 'pso', 'PSO339G2854' => 'pso', 'PSO339G4288' => 'pso', 'PSO339G4615' => 'pso', 'PSO384G2796' => 'pso', 'PSO384G2940' => 'pso', 'PSO384G4227' => 'pso', 'PSO478G1425' => 'pso', 'PSO541G3863' => 'pso', 'PSO675G0507' => 'pso', 'PSO782G0338' => 'pso', 'PSO832G0644' => 'pso', 'QL01p013664' => 'qlo', 'QL01p036598' => 'qlo', 'QL05p072984' => 'qlo', 'QL08p005768' => 'qlo', 'QL08p032743' => 'qlo', 'QL93p0073_0439' => 'qlo', 'QL93p0073_0444' => 'qlo', 'RcHm_v2.0_Chr5g0002851' => 'rch', 'RcHm_v2.0_Chr5g0055201' => 'rch', 'RcHm_v2.0_Chr5g0061191' => 'rch', 'RcHm_v2.0_Chr7g0203231' => 'rch', 'Rhsim01G0208100' => 'rsi', 'Rhsim01G0208200' => 'rsi', 'Rhsim02G0106500' => 'rsi', 'Rhsim03G0107900' => 'rsi', 'Rhsim06G0163400' => 'rsi', 'Rhsim13G0105200' => 'rsi', 'Sabra04G0006300' => 'sbr', 'Sabra04G0127000' => 'sbr', 'Sabra08G0148700' => 'sbr', 'Sabra09G0117400' => 'sbr', 'SalBow1G3326' => 'sbo', 'SalBow3G3228' => 'sbo', 'SalBow6G1634' => 'sbo', 'SalBow6G3603' => 'sbo', 'SalBow6G5266' => 'sbo', 'SalBow7G2265' => 'sbo', 'SalBow8G0850' => 'sbo', 'SalBow8G2592' => 'sbo', 'Sc05g0009240' => 'sci', 'Sc12g0002300' => 'sci', 'Sc21g0000100' => 'sci', 'Sc21g0004720' => 'sci', 'Sed0002949' => 'sed', 'Sed0004114' => 'sed', 'Sed0004306' => 'sed', 'Sed0006172' => 'sed', 'Sed0008413' => 'sed', 'Sed0013809' => 'sed', 'Sed0019556' => 'sed', 'SEGI_03570' => 'sgi', 'SEGI_07859' => 'sgi', 'SEGI_15042' => 'sgi', 'SEGI_16263' => 'sgi', 'SEGI_16552' => 'sgi', 'SEGI_24331' => 'sgi', 'SEGI_27316' => 'sgi', 'SEGI_29521' => 'sgi', 'SEGI_41342' => 'sgi', 'SGA_v2.0_scaffold27G11617' => 'sas', 'SGA_v2.0_scaffold316G48428' => 'sas', 'SGA_v2.0_scaffold49G18261' => 'sas', 'SGA_v2.0_scaffold7G03831' => 'sas', 'SGA_v2.0_scaffold93G28359' => 'sas', 'SHI02210' => 'shi', 'SHI06028' => 'shi', 'SHI06321' => 'shi', 'SMO111G0012' => 'smo', 'SMO228G0080' => 'smo', 'SMO356G0756' => 'smo', 'Solyc02g080620.3' => 'sly', 'Solyc06g074530.1' => 'sly', 'Solyc11g066890.1' => 'sly', 'Solyc11g072520.3' => 'sly', 'Sopen02g025330' => 'spe', 'Sopen06g031000' => 'spe', 'Sopen09g008240' => 'spe', 'Sopen09g025210' => 'spe', 'Sopen11g026600' => 'spe', 'Sopen11g030170' => 'spe', 'Sp1g10420' => 'spa', 'Sp3g06570' => 'spa', 'Sp4g10660' => 'spa', 'Sp5g16460' => 'spa', 'Sp6g22710' => 'spa', 'TAR365G0112' => 'tar', 'TAR369G0717' => 'tar', 'TAR374G0976' => 'tar', 'TAR623G1128' => 'tar', 'TAR626G1937' => 'tar', 'TAR627G0123' => 'tar', 'TAR628G0305' => 'tar', 'TAR636G1176' => 'tar', 'TAR636G2442' => 'tar', 'THA.LOC104800556' => 'tha', 'THA.LOC104809501' => 'tha', 'THA.LOC104815126' => 'tha', 'THA.LOC104815732' => 'tha', 'THA.LOC104823528' => 'tha', 'Thecc.02G365600' => 'tca', 'Thecc.06G222300' => 'tca', 'Thecc.09G261800' => 'tca', 'Thecc.09G291400' => 'tca', 'Thhalv10003028m.g' => 'esa', 'Thhalv10007886m.g' => 'esa', 'Thhalv10016085m.g' => 'esa', 'Thhalv10016681m.g' => 'esa', 'Thhalv10020951m.g' => 'esa', 'TPR.G15598' => 'tpr', 'TPR.G29305' => 'tpr', 'TPR.G32395' => 'tpr', 'TPR.G36998' => 'tpr', 'TPR.G4227' => 'tpr', 'TWI18G1433' => 'twi', 'TWI31G0755' => 'twi', 'TWI38G0912' => 'twi', 'TWI75G1097' => 'twi', 'TWI75G1619' => 'twi', 'TWI79G1336' => 'twi', 'unitig_0.g943' => 'ugi', 'unitig_0.g944' => 'ugi', 'unitig_22.g6646' => 'ugi', 'unitig_37.g12681' => 'ugi', 'unitig_8.g3290' => 'ugi', 'vmacro03278' => 'vma', 'vmacro12197' => 'vma', 'vmacro14478' => 'vma', 'vmacro15787' => 'vma', 'vmacro15789' => 'vma', 'vmacro15790' => 'vma', 'vmacro15806' => 'vma', 'vmacro22907' => 'vma', 'vmacro22908' => 'vma', 'vmacro22909' => 'vma', 'vmacro23108' => 'vma', 'VMungo0540G0540' => 'vmu', 'VMungo0540G2468' => 'vmu', 'VMungo1080G0390' => 'vmu', 'VMungo1080G1165' => 'vmu', 'VMungo1127G0170' => 'vmu', 'VMungo1127G2099' => 'vmu', 'VMungo1215G3013' => 'vmu', 'Zm00001eb013110' => 'zma', 'Zm00001eb084260' => 'zma', 'Zm00001eb096110' => 'zma', 'Zm00001eb217510' => 'zma', 'Zm00001eb322550' => 'zma', 'Zm00001eb390770' => 'zma', 'Zm00001eb397170' => 'zma', 'Zm00001eb404610' => 'zma', 'Zm00001eb421790' => 'zma' ) $gf_id = 'HOM05D000911' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000911' ) $data_identifier = 'HOM05D000911' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 16, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 5, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 6, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 8, 'nnu' => (int) 16, 'oeu' => (int) 8, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 5, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 16, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421790' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000911', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27780' => 'bna', 'A03p35380' => 'bna', 'A04p21160' => 'bna', 'A05p40570' => 'bna', 'A06p26900' => 'bna', 'A08p33230' => 'bna', 'A09p65960' => 'bna', 'A10p18290' => 'bna', 'Aa31LG1G12990' => 'aar', 'Aa31LG1G2980' => 'aar', 'Aa31LG4G14320' => 'aar', 'Aa31LG7G11800' => 'aar', 'Aa31sc36G50' => 'aar', 'Aa31sc36G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3721' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5459' => 'aag', 'Actinidia03028' => 'ach', 'Actinidia03753' => 'ach', 'Actinidia04187' => 'ach', 'Actinidia05509' => 'ach', 'Actinidia24180' => 'ach', 'Actinidia26906' => 'ach', 'Actinidia37097' => 'ach', 'Actinidia38249' => 'ach', 'Ah.01g003470' => 'amhyb', 'Ah.01g004580' => 'amhyb', 'Ah.01g014850' => 'amhyb', 'Ah.01g016830' => 'amhyb', 'Ah.14g088000' => 'amhyb', 'AL1G22980' => 'aly', 'AL3G18990' => 'aly', 'AL4G22440' => 'aly', 'AL4G33180' => 'aly', 'AL5G22920' => 'aly', 'AL6G33660' => 'aly', 'AL8G20720' => 'aly', 'Aqoxy1G00935' => 'aox', 'Aqoxy1G02094' => 'aox', 'Aqoxy2G01239' => 'aox', 'Aqoxy4G01870' => 'aox', 'Aqoxy7G00450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.36ZVTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71EM27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5D6C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH3WRE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3NCM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RIM768' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YB5YRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z36GDV' => 'arhy', 'AT1G08250' => 'ath', 'AT1G11790' => 'ath', 'AT2G27820' => 'ath', 'AT3G07630' => 'ath', 'AT3G44720' => 'ath', 'AT5G22630' => 'ath', 'ATR0693G304' => 'atr', 'ATR0794G109' => 'atr', 'ATR0820G120' => 'atr', 'ATR1159G064' => 'atr', 'Atru.chr10.2239' => 'acertr', 'Atru.chr3.3371' => 'acertr', 'Atru.chr6.3202' => 'acertr', 'AUR62006499' => 'cqu', 'AUR62012718' => 'cqu', 'AUR62021938' => 'cqu', 'AUR62023932' => 'cqu', 'AUR62025034' => 'cqu', 'AUR62025035' => 'cqu', 'AUR62038307' => 'cqu', 'AUR62043466' => 'cqu', 'BcaB02g10748' => 'bca', 'BcaB03g13231' => 'bca', 'BcaB03g14689' => 'bca', 'BcaB05g22716' => 'bca', 'BcaB06g28172' => 'bca', 'BcaB08g36413' => 'bca', 'BcaC01g02186' => 'bca', 'BcaC01g04272' => 'bca', 'BcaC02g08080' => 'bca', 'BcaC02g08227' => 'bca', 'BcaC03g13901' => 'bca', 'BcaC04g19593' => 'bca', 'BcaC04g20874' => 'bca', 'BcaC05g29557' => 'bca', 'BcaC06g35505' => 'bca', 'BcaC07g41954' => 'bca', 'BcaC07g41955' => 'bca', 'BcaC07g41956' => 'bca', 'BcaC07g42519' => 'bca', 'BcaC07g42520' => 'bca', 'BcaC07g42523' => 'bca', 'BcaC07g42524' => 'bca', 'BcaC07g42525' => 'bca', 'BcaC08g47480' => 'bca', 'BcaC08g47481' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00530' => 'bna', 'BolC2t07178H' => 'bol', 'BolC3t16567H' => 'bol', 'BolC4t27234H' => 'bol', 'BolC5t29728H' => 'bol', 'BolC5t34622H' => 'bol', 'BolC6t40321H' => 'bol', 'BolC7t42028H' => 'bol', 'BolC8t49125H' => 'bol', 'BolC8t52538H' => 'bol', 'BolC8t52539H' => 'bol', 'BolC9t56681H' => 'bol', 'BolC9t58266H' => 'bol', 'BolSC21t60294H' => 'bol', 'BraA02t05670Z' => 'bra', 'BraA03t12716Z' => 'bra', 'BraA04t17685Z' => 'bra', 'BraA05t22788Z' => 'bra', 'BraA06t24032Z' => 'bra', 'BraA06t25625Z' => 'bra', 'BraA07t27930Z' => 'bra', 'BraA08t35242Z' => 'bra', 'BraA09t38609Z' => 'bra', 'BraA10t43905Z' => 'bra', 'C02p11060' => 'bna', 'C03p42990' => 'bna', 'C03p67310' => 'bna', 'C04p56990' => 'bna', 'C04p58660' => 'bna', 'C05p09890' => 'bna', 'C05p59680' => 'bna', 'C06p19830' => 'bna', 'C06p53040' => 'bna', 'C07p15230' => 'bna', 'C08p50070' => 'bna', 'C08p50090' => 'bna', 'C09p38330' => 'bna', 'C09p53940' => 'bna', 'CAN.G1014.1' => 'can', 'CAN.G644.30' => 'can', 'CAN.G84.47' => 'can', 'CAN.G919.8' => 'can', 'CANSAT54G0113' => 'cansat', 'CANSAT54G1286' => 'cansat', 'CANSAT64G1020' => 'cansat', 'CARHR008080' => 'chi', 'CARHR008090' => 'chi', 'CARHR012130' => 'chi', 'CARHR038390' => 'chi', 'CARHR082330' => 'chi', 'CARHR120520' => 'chi', 'CARHR151470' => 'chi', 'CARHR190950' => 'chi', 'Carub.0001s0760' => 'cru', 'Carub.0001s1146' => 'cru', 'Carub.0003s0721' => 'cru', 'Carub.0004s0858' => 'cru', 'Carub.0005s1040' => 'cru', 'Carub.0006s2035' => 'cru', 'Carub.0015s0005' => 'cru', 'Ca_01607_v3' => 'car', 'Ca_01677_v3' => 'car', 'Ca_06087_v3' => 'car', 'Ca_19238_v3' => 'car', 'Ca_19373_v3' => 'car', 'Ca_21079_v3' => 'car', 'CBR_g54016' => 'cbr', 'CBR_g54018' => 'cbr', 'CBR_g54020' => 'cbr', 'Cc01_g09780' => 'ccan', 'Cc01_g11680' => 'ccan', 'Cc02_g15610' => 'ccan', 'Cc05_g04350' => 'ccan', 'Cc09_g01580' => 'ccan', 'CDE01G0795' => 'cde', 'CDE02G2024' => 'cde', 'CDE02G2260' => 'cde', 'CDE02G4561' => 'cde', 'CDE05G2733' => 'cde', 'CDE05G3422' => 'cde', 'CDE06G2003' => 'cde', 'CDE08G0576' => 'cde', 'CDE09G0048' => 'cde', 'CDE11G0805' => 'cde', 'Cfa003644' => 'cfa', 'Cfa006290' => 'cfa', 'Cfa010080' => 'cfa', 'Cfa011376' => 'cfa', 'Cfa011576' => 'cfa', 'Cfa011577' => 'cfa', 'Cfa014389' => 'cfa', 'Ciclev10006044m.g' => 'ccl', 'Ciclev10006954m.g' => 'ccl', 'Ciclev10015131m.g' => 'ccl', 'Ciclev10015580m.g' => 'ccl', 'Ciclev10028359m.g' => 'ccl', 'Ciclev10028573m.g' => 'ccl', 'CiPaw.03G159300' => 'cil', 'CiPaw.04G115100' => 'cil', 'CiPaw.09G092800' => 'cil', 'CiPaw.10G071800' => 'cil', 'CiPaw.13G105800' => 'cil', 'CiPaw.13G141000' => 'cil', 'CiPaw.14G103400' => 'cil', 'ClCG01G012700' => 'cla', 'ClCG01G012720' => 'cla', 'ClCG01G021920' => 'cla', 'ClCG02G008870' => 'cla', 'ClCG02G020840' => 'cla', 'ClCG02G021930' => 'cla', 'COL.COLO4_19302' => 'col', 'COL.COLO4_25262' => 'col', 'COL.COLO4_31788' => 'col', 'Cpa.g.c34684' => 'cpa', 'Cpa.g.c36520.1' => 'cpa', 'Cpa.g.c45626' => 'cpa', 'Cpa.g.sc121.17' => 'cpa', 'Cpa.g.sc13.22' => 'cpa', 'Cpa.g.sc87.88' => 'cpa', 'Cre06.g261800' => 'cre', 'CsaV3_1G014500' => 'csa', 'CsaV3_1G014510' => 'csa', 'CsaV3_2G034880' => 'csa', 'CsaV3_6G014760' => 'csa', 'CsaV3_6G021500' => 'csa', 'CsaV3_6G048980' => 'csa', 'CSS0002511' => 'camsi', 'CSS0007556' => 'camsi', 'CSS0008532' => 'camsi', 'CSS0009709' => 'camsi', 'CSS0010486' => 'camsi', 'CSS0016768' => 'camsi', 'CSS0023512' => 'camsi', 'CSS0025341' => 'camsi', 'CSS0027999' => 'camsi', 'CSS0028944' => 'camsi', 'CSS0032292' => 'camsi', 'CSS0032464' => 'camsi', 'CSS0037153' => 'camsi', 'CSS0039256' => 'camsi', 'CSS0048392' => 'camsi', 'CSS0050458' => 'camsi', 'DCAR_004224' => 'dca', 'DCAR_006147' => 'dca', 'DCAR_006465' => 'dca', 'DCAR_008159' => 'dca', 'DCAR_012164' => 'dca', 'DCAR_019764' => 'dca', 'Dinv05418' => 'din', 'Dinv10839' => 'din', 'Dinv12521' => 'din', 'Dinv13900' => 'din', 'Dinv29426' => 'din', 'Duzib150G0263' => 'dzi', 'Duzib168G1178' => 'dzi', 'Duzib168G1924' => 'dzi', 'Duzib170G0299' => 'dzi', 'Duzib170G0813' => 'dzi', 'Duzib235G1128' => 'dzi', 'Duzib248G1060' => 'dzi', 'ECA232G1910' => 'eca', 'ECA233G4621' => 'eca', 'ECA238G1216' => 'eca', 'ECA238G1784' => 'eca', 'ECA248G1242' => 'eca', 'EL10Ac8g20071' => 'bvu', 'EL10Ac9g21086' => 'bvu', 'EL10Ac9g22407' => 'bvu', 'EL10Ac9g22412' => 'bvu', 'Eucgr.A01119' => 'egr', 'Eucgr.E04043' => 'egr', 'Eucgr.J00428' => 'egr', 'Eucgr.J00958' => 'egr', 'FAN11G3091' => 'fan', 'FAN11G3651' => 'fan', 'FAN16G2566' => 'fan', 'FAN21G3155' => 'fan', 'FAN21G3400' => 'fan', 'FAN21G3543' => 'fan', 'FAN25G0234' => 'fan', 'FAN25G1422' => 'fan', 'FAN25G3392' => 'fan', 'FvH4_3g01940' => 'fve', 'FvH4_3g29870' => 'fve', 'FvH4_3g33680' => 'fve', 'Glyma.09G004200' => 'gma', 'Glyma.11G151288' => 'gma', 'Glyma.11G189100' => 'gma', 'Glyma.12G072500' => 'gma', 'Glyma.12G085500' => 'gma', 'Glyma.12G181800' => 'gma', 'Glyma.12G193000' => 'gma', 'Glyma.13G309300' => 'gma', 'Glyma.13G319000' => 'gma', 'Glyma.17G012600' => 'gma', 'Gohir.A06G148600' => 'ghi', 'Gohir.A07G115800' => 'ghi', 'Gohir.A08G003600' => 'ghi', 'Gohir.A09G093300' => 'ghi', 'Gohir.A09G105400' => 'ghi', 'Gohir.A09G105500' => 'ghi', 'Gohir.D06G154600' => 'ghi', 'Gohir.D07G120200' => 'ghi', 'Gohir.D08G013900' => 'ghi', 'Gohir.D09G093100' => 'ghi', 'Gohir.D09G102200' => 'ghi', 'Gohir.D09G102300' => 'ghi', 'Gorai.001G129400' => 'gra', 'Gorai.004G008200' => 'gra', 'Gorai.006G109800' => 'gra', 'Gorai.006G119500' => 'gra', 'Gorai.006G121300' => 'gra', 'Gorai.010G180700' => 'gra', 'GSVIVG01012716001' => 'vvi', 'GSVIVG01025118001' => 'vvi', 'GSVIVG01030439001' => 'vvi', 'GSVIVG01031397001' => 'vvi', 'HanXRQChr01g0004201' => 'han', 'HanXRQChr02g0054941' => 'han', 'HanXRQChr05g0141811' => 'han', 'HanXRQChr07g0197751' => 'han', 'HanXRQChr11g0346691' => 'han', 'HanXRQChr13g0396971' => 'han', 'HanXRQChr14g0432951' => 'han', 'HanXRQChr14g0452001' => 'han', 'HanXRQChr15g0496681' => 'han', 'HanXRQChr17g0557491' => 'han', 'HanXRQChr17g0557501' => 'han', 'Haze_06809' => 'cav', 'Haze_12852' => 'cav', 'Haze_15850' => 'cav', 'Haze_23446' => 'cav', 'Haze_23942' => 'cav', 'Haze_23943' => 'cav', 'Hma1.2p1_0091F.1_g046450' => 'hma', 'Hma1.2p1_0128F.1_g059910' => 'hma', 'Hma1.2p1_0249F.1_g102260' => 'hma', 'Hma1.2p1_0453F.1_g156190' => 'hma', 'Hma1.2p1_0695F.1_g204380' => 'hma', 'Hma1.2p1_0749F.1_g212650' => 'hma', 'Hma1.2p1_2156F.1_g315420' => 'hma', 'Hma1.2p1_2686F.1_g326940' => 'hma', 'HPP92_006428' => 'vpl', 'HPP92_012069' => 'vpl', 'HPP92_014129' => 'vpl', 'HPP92_014133' => 'vpl', 'HPP92_017315' => 'vpl', 'HPP92_026445' => 'vpl', 'HPP92_026446' => 'vpl', 'Hund00774' => 'sun', 'Hund07682' => 'sun', 'Hund21413' => 'sun', 'Hund23462' => 'sun', 'Hund23463' => 'sun', 'Lalb_Chr03g0027911' => 'lal', 'Lalb_Chr13g0304271' => 'lal', 'Lalb_Chr19g0137471' => 'lal', 'Lalb_Chr22g0350651' => 'lal', 'Lalb_Chr24g0395151' => 'lal', 'Lj1A1231T40' => 'lonja', 'Lj1A221T48' => 'lonja', 'Lj1C924T12' => 'lonja', 'Lj2C993G6' => 'lonja', 'Lj3g0005790' => 'lja', 'Lj3g0015432' => 'lja', 'Lj3g0017722' => 'lja', 'Lj3g0018497' => 'lja', 'Lj4g0025071' => 'lja', 'Lsat_1_v5_gn_1_129680' => 'lsa', 'Lsat_1_v5_gn_2_25321' => 'lsa', 'Lsat_1_v5_gn_2_95461' => 'lsa', 'Lsat_1_v5_gn_4_159620' => 'lsa', 'Lsat_1_v5_gn_6_41301' => 'lsa', 'Lsat_1_v5_gn_6_74660' => 'lsa', 'Lsat_1_v5_gn_7_11520' => 'lsa', 'Lsat_1_v5_gn_9_67680' => 'lsa', 'Manes.04G008300' => 'mes', 'Manes.04G008400' => 'mes', 'Manes.04G026500' => 'mes', 'Manes.10G135300' => 'mes', 'Manes.11G157300' => 'mes', 'Manes.12G074000' => 'mes', 'Manes.16G006200' => 'mes', 'Manes.17G026400' => 'mes', 'Mapoly0024s0086' => 'mpo', 'Mapoly0024s0087' => 'mpo', 'Mapoly0071s0057' => 'mpo', 'Mapoly0204s0012' => 'mpo', 'MBI04_g37681_MAGBIO' => 'mbi', 'MBI05_g17779_MAGBIO' => 'mbi', 'MBI12_g31184_MAGBIO' => 'mbi', 'MBI17_g11083_MAGBIO' => 'mbi', 'MBI18_g03883_MAGBIO' => 'mbi', 'MBI18_g28940_MAGBIO' => 'mbi', 'MCO01G690' => 'mco', 'MD03G1109900' => 'mdo', 'MD03G1134800' => 'mdo', 'MD05G1348000' => 'mdo', 'MD10G1322400' => 'mdo', 'MD11G1123300' => 'mdo', 'MD11G1157600' => 'mdo', 'Medtr2g084875' => 'mtr', 'Medtr2g088130' => 'mtr', 'Medtr4g055310' => 'mtr', 'Medtr4g061070' => 'mtr', 'Medtr4g132250' => 'mtr', 'MELO3C004795.2' => 'cme', 'MELO3C004797.2' => 'cme', 'MELO3C007396.2' => 'cme', 'MELO3C019277.2' => 'cme', 'MELO3C021449.2' => 'cme', 'MELO3C025736.2' => 'cme', 'Migut.D02175' => 'egut', 'Migut.H01573' => 'egut', 'Migut.M01327' => 'egut', 'Migut.N02513' => 'egut', 'MSTRG.14638' => 'ama', 'MSTRG.18632' => 'ama', 'MSTRG.7203' => 'ama', 'Nitab4.5_0000533g0140' => 'nta', 'Nitab4.5_0000888g0150' => 'nta', 'Nitab4.5_0001453g0040' => 'nta', 'Nitab4.5_0002827g0090' => 'nta', 'Nitab4.5_0003082g0040' => 'nta', 'Nitab4.5_0007799g0040' => 'nta', 'Nitab4.5_0008983g0010' => 'nta', 'Nitab4.5_0009017g0020' => 'nta', 'Nn1g02132' => 'nnu', 'Nn1g03492' => 'nnu', 'Nn1g03493' => 'nnu', 'Nn1g03494' => 'nnu', 'Nn1g07164' => 'nnu', 'Nn1g07291' => 'nnu', 'Nn2g10655' => 'nnu', 'Nn2g11652' => 'nnu', 'Nn2g14008' => 'nnu', 'Nn3g17476' => 'nnu', 'Nn3g17477' => 'nnu', 'Nn4g22370' => 'nnu', 'Nn4g25255' => 'nnu', 'Nn5g27755' => 'nnu', 'Nn6g34260' => 'nnu', 'Nn6g35041' => 'nnu', 'Oeu005924.1' => 'oeu', 'Oeu008383.1' => 'oeu', 'Oeu014928.1' => 'oeu', 'Oeu019889.1' => 'oeu', 'Oeu022271.1' => 'oeu', 'Oeu025271.1' => 'oeu', 'Oeu036302.1' => 'oeu', 'Oeu044100.1' => 'oeu', 'Os01g0528300' => 'osa', 'Os03g0286200' => 'osa', 'Os04g0406600' => 'osa', 'Os07g0512000' => 'osa', 'Os07g0694600' => 'osa', 'Os08g0411000' => 'osa', 'Os09g0565700' => 'osa', 'Os09g0566050' => 'osa', 'Os10g0523700' => 'osa', 'Peaxi162Scf00002g00514' => 'pax', 'Peaxi162Scf00047g01817' => 'pax', 'Peaxi162Scf00114g00001' => 'pax', 'Peaxi162Scf00147g00613' => 'pax', 'Peaxi162Scf00389g00425' => 'pax', 'PGR042G1139' => 'pgr', 'PGR042G3273' => 'pgr', 'PGR102G2180' => 'pgr', 'PGR119G0234' => 'pgr', 'PGR119G0668' => 'pgr', 'PGSC0003DMG400007122' => 'stu', 'PGSC0003DMG400016478' => 'stu', 'PGSC0003DMG400025374' => 'stu', 'PGSC0003DMG400026536' => 'stu', 'Phvul.003G079600' => 'pvu', 'Phvul.005G115600' => 'pvu', 'Phvul.005G127100' => 'pvu', 'Phvul.006G149500' => 'pvu', 'Phvul.006G149600' => 'pvu', 'Phvul.011G071800' => 'pvu', 'Phvul.011G090400' => 'pvu', 'Potri.004G013400' => 'ptr', 'Potri.004G188100' => 'ptr', 'Potri.008G195500' => 'ptr', 'Potri.009G148800' => 'ptr', 'Potri.011G004700' => 'ptr', 'Pp3c17_22810' => 'ppa', 'Pp3c18_4480' => 'ppa', 'Pp3c19_13030' => 'ppa', 'Pp3c1_33620' => 'ppa', 'Pp3c2_9380' => 'ppa', 'PRCOL_00001023' => 'pco', 'Prupe.3G216300' => 'ppe', 'Prupe.4G019500' => 'ppe', 'Prupe.6G092500' => 'ppe', 'Prupe.6G119200' => 'ppe', 'Psat0s1945g0080' => 'psa', 'Psat0s4167g0040' => 'psa', 'Psat1g185800' => 'psa', 'Psat4g006440' => 'psa', 'Psat4g006480' => 'psa', 'Psat4g168120' => 'psa', 'Psat5g255680' => 'psa', 'Psat5g261760' => 'psa', 'Psat7g222120' => 'psa', 'PSO063G7252' => 'pso', 'PSO170G4778' => 'pso', 'PSO210G2249' => 'pso', 'PSO339G2411' => 'pso', 'PSO339G2457' => 'pso', 'PSO339G2854' => 'pso', 'PSO339G4288' => 'pso', 'PSO339G4615' => 'pso', 'PSO384G2796' => 'pso', 'PSO384G2940' => 'pso', 'PSO384G4227' => 'pso', 'PSO478G1425' => 'pso', 'PSO541G3863' => 'pso', 'PSO675G0507' => 'pso', 'PSO782G0338' => 'pso', 'PSO832G0644' => 'pso', 'QL01p013664' => 'qlo', 'QL01p036598' => 'qlo', 'QL05p072984' => 'qlo', 'QL08p005768' => 'qlo', 'QL08p032743' => 'qlo', 'QL93p0073_0439' => 'qlo', 'QL93p0073_0444' => 'qlo', 'RcHm_v2.0_Chr5g0002851' => 'rch', 'RcHm_v2.0_Chr5g0055201' => 'rch', 'RcHm_v2.0_Chr5g0061191' => 'rch', 'RcHm_v2.0_Chr7g0203231' => 'rch', 'Rhsim01G0208100' => 'rsi', 'Rhsim01G0208200' => 'rsi', 'Rhsim02G0106500' => 'rsi', 'Rhsim03G0107900' => 'rsi', 'Rhsim06G0163400' => 'rsi', 'Rhsim13G0105200' => 'rsi', 'Sabra04G0006300' => 'sbr', 'Sabra04G0127000' => 'sbr', 'Sabra08G0148700' => 'sbr', 'Sabra09G0117400' => 'sbr', 'SalBow1G3326' => 'sbo', 'SalBow3G3228' => 'sbo', 'SalBow6G1634' => 'sbo', 'SalBow6G3603' => 'sbo', 'SalBow6G5266' => 'sbo', 'SalBow7G2265' => 'sbo', 'SalBow8G0850' => 'sbo', 'SalBow8G2592' => 'sbo', 'Sc05g0009240' => 'sci', 'Sc12g0002300' => 'sci', 'Sc21g0000100' => 'sci', 'Sc21g0004720' => 'sci', 'Sed0002949' => 'sed', 'Sed0004114' => 'sed', 'Sed0004306' => 'sed', 'Sed0006172' => 'sed', 'Sed0008413' => 'sed', 'Sed0013809' => 'sed', 'Sed0019556' => 'sed', 'SEGI_03570' => 'sgi', 'SEGI_07859' => 'sgi', 'SEGI_15042' => 'sgi', 'SEGI_16263' => 'sgi', 'SEGI_16552' => 'sgi', 'SEGI_24331' => 'sgi', 'SEGI_27316' => 'sgi', 'SEGI_29521' => 'sgi', 'SEGI_41342' => 'sgi', 'SGA_v2.0_scaffold27G11617' => 'sas', 'SGA_v2.0_scaffold316G48428' => 'sas', 'SGA_v2.0_scaffold49G18261' => 'sas', 'SGA_v2.0_scaffold7G03831' => 'sas', 'SGA_v2.0_scaffold93G28359' => 'sas', 'SHI02210' => 'shi', 'SHI06028' => 'shi', 'SHI06321' => 'shi', 'SMO111G0012' => 'smo', 'SMO228G0080' => 'smo', 'SMO356G0756' => 'smo', 'Solyc02g080620.3' => 'sly', 'Solyc06g074530.1' => 'sly', 'Solyc11g066890.1' => 'sly', 'Solyc11g072520.3' => 'sly', 'Sopen02g025330' => 'spe', 'Sopen06g031000' => 'spe', 'Sopen09g008240' => 'spe', 'Sopen09g025210' => 'spe', 'Sopen11g026600' => 'spe', 'Sopen11g030170' => 'spe', 'Sp1g10420' => 'spa', 'Sp3g06570' => 'spa', 'Sp4g10660' => 'spa', 'Sp5g16460' => 'spa', 'Sp6g22710' => 'spa', 'TAR365G0112' => 'tar', 'TAR369G0717' => 'tar', 'TAR374G0976' => 'tar', 'TAR623G1128' => 'tar', 'TAR626G1937' => 'tar', 'TAR627G0123' => 'tar', 'TAR628G0305' => 'tar', 'TAR636G1176' => 'tar', 'TAR636G2442' => 'tar', 'THA.LOC104800556' => 'tha', 'THA.LOC104809501' => 'tha', 'THA.LOC104815126' => 'tha', 'THA.LOC104815732' => 'tha', 'THA.LOC104823528' => 'tha', 'Thecc.02G365600' => 'tca', 'Thecc.06G222300' => 'tca', 'Thecc.09G261800' => 'tca', 'Thecc.09G291400' => 'tca', 'Thhalv10003028m.g' => 'esa', 'Thhalv10007886m.g' => 'esa', 'Thhalv10016085m.g' => 'esa', 'Thhalv10016681m.g' => 'esa', 'Thhalv10020951m.g' => 'esa', 'TPR.G15598' => 'tpr', 'TPR.G29305' => 'tpr', 'TPR.G32395' => 'tpr', 'TPR.G36998' => 'tpr', 'TPR.G4227' => 'tpr', 'TWI18G1433' => 'twi', 'TWI31G0755' => 'twi', 'TWI38G0912' => 'twi', 'TWI75G1097' => 'twi', 'TWI75G1619' => 'twi', 'TWI79G1336' => 'twi', 'unitig_0.g943' => 'ugi', 'unitig_0.g944' => 'ugi', 'unitig_22.g6646' => 'ugi', 'unitig_37.g12681' => 'ugi', 'unitig_8.g3290' => 'ugi', 'vmacro03278' => 'vma', 'vmacro12197' => 'vma', 'vmacro14478' => 'vma', 'vmacro15787' => 'vma', 'vmacro15789' => 'vma', 'vmacro15790' => 'vma', 'vmacro15806' => 'vma', 'vmacro22907' => 'vma', 'vmacro22908' => 'vma', 'vmacro22909' => 'vma', 'vmacro23108' => 'vma', 'VMungo0540G0540' => 'vmu', 'VMungo0540G2468' => 'vmu', 'VMungo1080G0390' => 'vmu', 'VMungo1080G1165' => 'vmu', 'VMungo1127G0170' => 'vmu', 'VMungo1127G2099' => 'vmu', 'VMungo1215G3013' => 'vmu', 'Zm00001eb013110' => 'zma', 'Zm00001eb084260' => 'zma', 'Zm00001eb096110' => 'zma', 'Zm00001eb217510' => 'zma', 'Zm00001eb322550' => 'zma', 'Zm00001eb390770' => 'zma', 'Zm00001eb397170' => 'zma', 'Zm00001eb404610' => 'zma', 'Zm00001eb421790' => 'zma' ), 'gf_id' => 'HOM05D000911', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000911' ), 'data_identifier' => 'HOM05D000911', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000911', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27780' => 'bna', 'A03p35380' => 'bna', 'A04p21160' => 'bna', 'A05p40570' => 'bna', 'A06p26900' => 'bna', 'A08p33230' => 'bna', 'A09p65960' => 'bna', 'A10p18290' => 'bna', 'Aa31LG1G12990' => 'aar', 'Aa31LG1G2980' => 'aar', 'Aa31LG4G14320' => 'aar', 'Aa31LG7G11800' => 'aar', 'Aa31sc36G50' => 'aar', 'Aa31sc36G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3721' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5459' => 'aag', 'Actinidia03028' => 'ach', 'Actinidia03753' => 'ach', 'Actinidia04187' => 'ach', 'Actinidia05509' => 'ach', 'Actinidia24180' => 'ach', 'Actinidia26906' => 'ach', 'Actinidia37097' => 'ach', 'Actinidia38249' => 'ach', 'Ah.01g003470' => 'amhyb', 'Ah.01g004580' => 'amhyb', 'Ah.01g014850' => 'amhyb', 'Ah.01g016830' => 'amhyb', 'Ah.14g088000' => 'amhyb', 'AL1G22980' => 'aly', 'AL3G18990' => 'aly', 'AL4G22440' => 'aly', 'AL4G33180' => 'aly', 'AL5G22920' => 'aly', 'AL6G33660' => 'aly', 'AL8G20720' => 'aly', 'Aqoxy1G00935' => 'aox', 'Aqoxy1G02094' => 'aox', 'Aqoxy2G01239' => 'aox', 'Aqoxy4G01870' => 'aox', 'Aqoxy7G00450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.36ZVTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71EM27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5D6C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH3WRE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3NCM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RIM768' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YB5YRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z36GDV' => 'arhy', 'AT1G08250' => 'ath', 'AT1G11790' => 'ath', 'AT2G27820' => 'ath', 'AT3G07630' => 'ath', 'AT3G44720' => 'ath', 'AT5G22630' => 'ath', 'ATR0693G304' => 'atr', 'ATR0794G109' => 'atr', 'ATR0820G120' => 'atr', 'ATR1159G064' => 'atr', 'Atru.chr10.2239' => 'acertr', 'Atru.chr3.3371' => 'acertr', 'Atru.chr6.3202' => 'acertr', 'AUR62006499' => 'cqu', 'AUR62012718' => 'cqu', 'AUR62021938' => 'cqu', 'AUR62023932' => 'cqu', 'AUR62025034' => 'cqu', 'AUR62025035' => 'cqu', 'AUR62038307' => 'cqu', 'AUR62043466' => 'cqu', 'BcaB02g10748' => 'bca', 'BcaB03g13231' => 'bca', 'BcaB03g14689' => 'bca', 'BcaB05g22716' => 'bca', 'BcaB06g28172' => 'bca', 'BcaB08g36413' => 'bca', 'BcaC01g02186' => 'bca', 'BcaC01g04272' => 'bca', 'BcaC02g08080' => 'bca', 'BcaC02g08227' => 'bca', 'BcaC03g13901' => 'bca', 'BcaC04g19593' => 'bca', 'BcaC04g20874' => 'bca', 'BcaC05g29557' => 'bca', 'BcaC06g35505' => 'bca', 'BcaC07g41954' => 'bca', 'BcaC07g41955' => 'bca', 'BcaC07g41956' => 'bca', 'BcaC07g42519' => 'bca', 'BcaC07g42520' => 'bca', 'BcaC07g42523' => 'bca', 'BcaC07g42524' => 'bca', 'BcaC07g42525' => 'bca', 'BcaC08g47480' => 'bca', 'BcaC08g47481' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00530' => 'bna', 'BolC2t07178H' => 'bol', 'BolC3t16567H' => 'bol', 'BolC4t27234H' => 'bol', 'BolC5t29728H' => 'bol', 'BolC5t34622H' => 'bol', 'BolC6t40321H' => 'bol', 'BolC7t42028H' => 'bol', 'BolC8t49125H' => 'bol', 'BolC8t52538H' => 'bol', 'BolC8t52539H' => 'bol', 'BolC9t56681H' => 'bol', 'BolC9t58266H' => 'bol', 'BolSC21t60294H' => 'bol', 'BraA02t05670Z' => 'bra', 'BraA03t12716Z' => 'bra', 'BraA04t17685Z' => 'bra', 'BraA05t22788Z' => 'bra', 'BraA06t24032Z' => 'bra', 'BraA06t25625Z' => 'bra', 'BraA07t27930Z' => 'bra', 'BraA08t35242Z' => 'bra', 'BraA09t38609Z' => 'bra', 'BraA10t43905Z' => 'bra', 'C02p11060' => 'bna', 'C03p42990' => 'bna', 'C03p67310' => 'bna', 'C04p56990' => 'bna', 'C04p58660' => 'bna', 'C05p09890' => 'bna', 'C05p59680' => 'bna', 'C06p19830' => 'bna', 'C06p53040' => 'bna', 'C07p15230' => 'bna', 'C08p50070' => 'bna', 'C08p50090' => 'bna', 'C09p38330' => 'bna', 'C09p53940' => 'bna', 'CAN.G1014.1' => 'can', 'CAN.G644.30' => 'can', 'CAN.G84.47' => 'can', 'CAN.G919.8' => 'can', 'CANSAT54G0113' => 'cansat', 'CANSAT54G1286' => 'cansat', 'CANSAT64G1020' => 'cansat', 'CARHR008080' => 'chi', 'CARHR008090' => 'chi', 'CARHR012130' => 'chi', 'CARHR038390' => 'chi', 'CARHR082330' => 'chi', 'CARHR120520' => 'chi', 'CARHR151470' => 'chi', 'CARHR190950' => 'chi', 'Carub.0001s0760' => 'cru', 'Carub.0001s1146' => 'cru', 'Carub.0003s0721' => 'cru', 'Carub.0004s0858' => 'cru', 'Carub.0005s1040' => 'cru', 'Carub.0006s2035' => 'cru', 'Carub.0015s0005' => 'cru', 'Ca_01607_v3' => 'car', 'Ca_01677_v3' => 'car', 'Ca_06087_v3' => 'car', 'Ca_19238_v3' => 'car', 'Ca_19373_v3' => 'car', 'Ca_21079_v3' => 'car', 'CBR_g54016' => 'cbr', 'CBR_g54018' => 'cbr', 'CBR_g54020' => 'cbr', 'Cc01_g09780' => 'ccan', 'Cc01_g11680' => 'ccan', 'Cc02_g15610' => 'ccan', 'Cc05_g04350' => 'ccan', 'Cc09_g01580' => 'ccan', 'CDE01G0795' => 'cde', 'CDE02G2024' => 'cde', 'CDE02G2260' => 'cde', 'CDE02G4561' => 'cde', 'CDE05G2733' => 'cde', 'CDE05G3422' => 'cde', 'CDE06G2003' => 'cde', 'CDE08G0576' => 'cde', 'CDE09G0048' => 'cde', 'CDE11G0805' => 'cde', 'Cfa003644' => 'cfa', 'Cfa006290' => 'cfa', 'Cfa010080' => 'cfa', 'Cfa011376' => 'cfa', 'Cfa011576' => 'cfa', 'Cfa011577' => 'cfa', 'Cfa014389' => 'cfa', 'Ciclev10006044m.g' => 'ccl', 'Ciclev10006954m.g' => 'ccl', 'Ciclev10015131m.g' => 'ccl', 'Ciclev10015580m.g' => 'ccl', 'Ciclev10028359m.g' => 'ccl', 'Ciclev10028573m.g' => 'ccl', 'CiPaw.03G159300' => 'cil', 'CiPaw.04G115100' => 'cil', 'CiPaw.09G092800' => 'cil', 'CiPaw.10G071800' => 'cil', 'CiPaw.13G105800' => 'cil', 'CiPaw.13G141000' => 'cil', 'CiPaw.14G103400' => 'cil', 'ClCG01G012700' => 'cla', 'ClCG01G012720' => 'cla', 'ClCG01G021920' => 'cla', 'ClCG02G008870' => 'cla', 'ClCG02G020840' => 'cla', 'ClCG02G021930' => 'cla', 'COL.COLO4_19302' => 'col', 'COL.COLO4_25262' => 'col', 'COL.COLO4_31788' => 'col', 'Cpa.g.c34684' => 'cpa', 'Cpa.g.c36520.1' => 'cpa', 'Cpa.g.c45626' => 'cpa', 'Cpa.g.sc121.17' => 'cpa', 'Cpa.g.sc13.22' => 'cpa', 'Cpa.g.sc87.88' => 'cpa', 'Cre06.g261800' => 'cre', 'CsaV3_1G014500' => 'csa', 'CsaV3_1G014510' => 'csa', 'CsaV3_2G034880' => 'csa', 'CsaV3_6G014760' => 'csa', 'CsaV3_6G021500' => 'csa', 'CsaV3_6G048980' => 'csa', 'CSS0002511' => 'camsi', 'CSS0007556' => 'camsi', 'CSS0008532' => 'camsi', 'CSS0009709' => 'camsi', 'CSS0010486' => 'camsi', 'CSS0016768' => 'camsi', 'CSS0023512' => 'camsi', 'CSS0025341' => 'camsi', 'CSS0027999' => 'camsi', 'CSS0028944' => 'camsi', 'CSS0032292' => 'camsi', 'CSS0032464' => 'camsi', 'CSS0037153' => 'camsi', 'CSS0039256' => 'camsi', 'CSS0048392' => 'camsi', 'CSS0050458' => 'camsi', 'DCAR_004224' => 'dca', 'DCAR_006147' => 'dca', 'DCAR_006465' => 'dca', 'DCAR_008159' => 'dca', 'DCAR_012164' => 'dca', 'DCAR_019764' => 'dca', 'Dinv05418' => 'din', 'Dinv10839' => 'din', 'Dinv12521' => 'din', 'Dinv13900' => 'din', 'Dinv29426' => 'din', 'Duzib150G0263' => 'dzi', 'Duzib168G1178' => 'dzi', 'Duzib168G1924' => 'dzi', 'Duzib170G0299' => 'dzi', 'Duzib170G0813' => 'dzi', 'Duzib235G1128' => 'dzi', 'Duzib248G1060' => 'dzi', 'ECA232G1910' => 'eca', 'ECA233G4621' => 'eca', 'ECA238G1216' => 'eca', 'ECA238G1784' => 'eca', 'ECA248G1242' => 'eca', 'EL10Ac8g20071' => 'bvu', 'EL10Ac9g21086' => 'bvu', 'EL10Ac9g22407' => 'bvu', 'EL10Ac9g22412' => 'bvu', 'Eucgr.A01119' => 'egr', 'Eucgr.E04043' => 'egr', 'Eucgr.J00428' => 'egr', 'Eucgr.J00958' => 'egr', 'FAN11G3091' => 'fan', 'FAN11G3651' => 'fan', 'FAN16G2566' => 'fan', 'FAN21G3155' => 'fan', 'FAN21G3400' => 'fan', 'FAN21G3543' => 'fan', 'FAN25G0234' => 'fan', 'FAN25G1422' => 'fan', 'FAN25G3392' => 'fan', 'FvH4_3g01940' => 'fve', 'FvH4_3g29870' => 'fve', 'FvH4_3g33680' => 'fve', 'Glyma.09G004200' => 'gma', 'Glyma.11G151288' => 'gma', 'Glyma.11G189100' => 'gma', 'Glyma.12G072500' => 'gma', 'Glyma.12G085500' => 'gma', 'Glyma.12G181800' => 'gma', 'Glyma.12G193000' => 'gma', 'Glyma.13G309300' => 'gma', 'Glyma.13G319000' => 'gma', 'Glyma.17G012600' => 'gma', 'Gohir.A06G148600' => 'ghi', 'Gohir.A07G115800' => 'ghi', 'Gohir.A08G003600' => 'ghi', 'Gohir.A09G093300' => 'ghi', 'Gohir.A09G105400' => 'ghi', 'Gohir.A09G105500' => 'ghi', 'Gohir.D06G154600' => 'ghi', 'Gohir.D07G120200' => 'ghi', 'Gohir.D08G013900' => 'ghi', 'Gohir.D09G093100' => 'ghi', 'Gohir.D09G102200' => 'ghi', 'Gohir.D09G102300' => 'ghi', 'Gorai.001G129400' => 'gra', 'Gorai.004G008200' => 'gra', 'Gorai.006G109800' => 'gra', 'Gorai.006G119500' => 'gra', 'Gorai.006G121300' => 'gra', 'Gorai.010G180700' => 'gra', 'GSVIVG01012716001' => 'vvi', 'GSVIVG01025118001' => 'vvi', 'GSVIVG01030439001' => 'vvi', 'GSVIVG01031397001' => 'vvi', 'HanXRQChr01g0004201' => 'han', 'HanXRQChr02g0054941' => 'han', 'HanXRQChr05g0141811' => 'han', 'HanXRQChr07g0197751' => 'han', 'HanXRQChr11g0346691' => 'han', 'HanXRQChr13g0396971' => 'han', 'HanXRQChr14g0432951' => 'han', 'HanXRQChr14g0452001' => 'han', 'HanXRQChr15g0496681' => 'han', 'HanXRQChr17g0557491' => 'han', 'HanXRQChr17g0557501' => 'han', 'Haze_06809' => 'cav', 'Haze_12852' => 'cav', 'Haze_15850' => 'cav', 'Haze_23446' => 'cav', 'Haze_23942' => 'cav', 'Haze_23943' => 'cav', 'Hma1.2p1_0091F.1_g046450' => 'hma', 'Hma1.2p1_0128F.1_g059910' => 'hma', 'Hma1.2p1_0249F.1_g102260' => 'hma', 'Hma1.2p1_0453F.1_g156190' => 'hma', 'Hma1.2p1_0695F.1_g204380' => 'hma', 'Hma1.2p1_0749F.1_g212650' => 'hma', 'Hma1.2p1_2156F.1_g315420' => 'hma', 'Hma1.2p1_2686F.1_g326940' => 'hma', 'HPP92_006428' => 'vpl', 'HPP92_012069' => 'vpl', 'HPP92_014129' => 'vpl', 'HPP92_014133' => 'vpl', 'HPP92_017315' => 'vpl', 'HPP92_026445' => 'vpl', 'HPP92_026446' => 'vpl', 'Hund00774' => 'sun', 'Hund07682' => 'sun', 'Hund21413' => 'sun', 'Hund23462' => 'sun', 'Hund23463' => 'sun', 'Lalb_Chr03g0027911' => 'lal', 'Lalb_Chr13g0304271' => 'lal', 'Lalb_Chr19g0137471' => 'lal', 'Lalb_Chr22g0350651' => 'lal', 'Lalb_Chr24g0395151' => 'lal', 'Lj1A1231T40' => 'lonja', 'Lj1A221T48' => 'lonja', 'Lj1C924T12' => 'lonja', 'Lj2C993G6' => 'lonja', 'Lj3g0005790' => 'lja', 'Lj3g0015432' => 'lja', 'Lj3g0017722' => 'lja', 'Lj3g0018497' => 'lja', 'Lj4g0025071' => 'lja', 'Lsat_1_v5_gn_1_129680' => 'lsa', 'Lsat_1_v5_gn_2_25321' => 'lsa', 'Lsat_1_v5_gn_2_95461' => 'lsa', 'Lsat_1_v5_gn_4_159620' => 'lsa', 'Lsat_1_v5_gn_6_41301' => 'lsa', 'Lsat_1_v5_gn_6_74660' => 'lsa', 'Lsat_1_v5_gn_7_11520' => 'lsa', 'Lsat_1_v5_gn_9_67680' => 'lsa', 'Manes.04G008300' => 'mes', 'Manes.04G008400' => 'mes', 'Manes.04G026500' => 'mes', 'Manes.10G135300' => 'mes', 'Manes.11G157300' => 'mes', 'Manes.12G074000' => 'mes', 'Manes.16G006200' => 'mes', 'Manes.17G026400' => 'mes', 'Mapoly0024s0086' => 'mpo', 'Mapoly0024s0087' => 'mpo', 'Mapoly0071s0057' => 'mpo', 'Mapoly0204s0012' => 'mpo', 'MBI04_g37681_MAGBIO' => 'mbi', 'MBI05_g17779_MAGBIO' => 'mbi', 'MBI12_g31184_MAGBIO' => 'mbi', 'MBI17_g11083_MAGBIO' => 'mbi', 'MBI18_g03883_MAGBIO' => 'mbi', 'MBI18_g28940_MAGBIO' => 'mbi', 'MCO01G690' => 'mco', 'MD03G1109900' => 'mdo', 'MD03G1134800' => 'mdo', 'MD05G1348000' => 'mdo', 'MD10G1322400' => 'mdo', 'MD11G1123300' => 'mdo', 'MD11G1157600' => 'mdo', 'Medtr2g084875' => 'mtr', 'Medtr2g088130' => 'mtr', 'Medtr4g055310' => 'mtr', 'Medtr4g061070' => 'mtr', 'Medtr4g132250' => 'mtr', 'MELO3C004795.2' => 'cme', 'MELO3C004797.2' => 'cme', 'MELO3C007396.2' => 'cme', 'MELO3C019277.2' => 'cme', 'MELO3C021449.2' => 'cme', 'MELO3C025736.2' => 'cme', 'Migut.D02175' => 'egut', 'Migut.H01573' => 'egut', 'Migut.M01327' => 'egut', 'Migut.N02513' => 'egut', 'MSTRG.14638' => 'ama', 'MSTRG.18632' => 'ama', 'MSTRG.7203' => 'ama', 'Nitab4.5_0000533g0140' => 'nta', 'Nitab4.5_0000888g0150' => 'nta', 'Nitab4.5_0001453g0040' => 'nta', 'Nitab4.5_0002827g0090' => 'nta', 'Nitab4.5_0003082g0040' => 'nta', 'Nitab4.5_0007799g0040' => 'nta', 'Nitab4.5_0008983g0010' => 'nta', 'Nitab4.5_0009017g0020' => 'nta', 'Nn1g02132' => 'nnu', 'Nn1g03492' => 'nnu', 'Nn1g03493' => 'nnu', 'Nn1g03494' => 'nnu', 'Nn1g07164' => 'nnu', 'Nn1g07291' => 'nnu', 'Nn2g10655' => 'nnu', 'Nn2g11652' => 'nnu', 'Nn2g14008' => 'nnu', 'Nn3g17476' => 'nnu', 'Nn3g17477' => 'nnu', 'Nn4g22370' => 'nnu', 'Nn4g25255' => 'nnu', 'Nn5g27755' => 'nnu', 'Nn6g34260' => 'nnu', 'Nn6g35041' => 'nnu', 'Oeu005924.1' => 'oeu', 'Oeu008383.1' => 'oeu', 'Oeu014928.1' => 'oeu', 'Oeu019889.1' => 'oeu', 'Oeu022271.1' => 'oeu', 'Oeu025271.1' => 'oeu', 'Oeu036302.1' => 'oeu', 'Oeu044100.1' => 'oeu', 'Os01g0528300' => 'osa', 'Os03g0286200' => 'osa', 'Os04g0406600' => 'osa', 'Os07g0512000' => 'osa', 'Os07g0694600' => 'osa', 'Os08g0411000' => 'osa', 'Os09g0565700' => 'osa', 'Os09g0566050' => 'osa', 'Os10g0523700' => 'osa', 'Peaxi162Scf00002g00514' => 'pax', 'Peaxi162Scf00047g01817' => 'pax', 'Peaxi162Scf00114g00001' => 'pax', 'Peaxi162Scf00147g00613' => 'pax', 'Peaxi162Scf00389g00425' => 'pax', 'PGR042G1139' => 'pgr', 'PGR042G3273' => 'pgr', 'PGR102G2180' => 'pgr', 'PGR119G0234' => 'pgr', 'PGR119G0668' => 'pgr', 'PGSC0003DMG400007122' => 'stu', 'PGSC0003DMG400016478' => 'stu', 'PGSC0003DMG400025374' => 'stu', 'PGSC0003DMG400026536' => 'stu', 'Phvul.003G079600' => 'pvu', 'Phvul.005G115600' => 'pvu', 'Phvul.005G127100' => 'pvu', 'Phvul.006G149500' => 'pvu', 'Phvul.006G149600' => 'pvu', 'Phvul.011G071800' => 'pvu', 'Phvul.011G090400' => 'pvu', 'Potri.004G013400' => 'ptr', 'Potri.004G188100' => 'ptr', 'Potri.008G195500' => 'ptr', 'Potri.009G148800' => 'ptr', 'Potri.011G004700' => 'ptr', 'Pp3c17_22810' => 'ppa', 'Pp3c18_4480' => 'ppa', 'Pp3c19_13030' => 'ppa', 'Pp3c1_33620' => 'ppa', 'Pp3c2_9380' => 'ppa', 'PRCOL_00001023' => 'pco', 'Prupe.3G216300' => 'ppe', 'Prupe.4G019500' => 'ppe', 'Prupe.6G092500' => 'ppe', 'Prupe.6G119200' => 'ppe', 'Psat0s1945g0080' => 'psa', 'Psat0s4167g0040' => 'psa', 'Psat1g185800' => 'psa', 'Psat4g006440' => 'psa', 'Psat4g006480' => 'psa', 'Psat4g168120' => 'psa', 'Psat5g255680' => 'psa', 'Psat5g261760' => 'psa', 'Psat7g222120' => 'psa', 'PSO063G7252' => 'pso', 'PSO170G4778' => 'pso', 'PSO210G2249' => 'pso', 'PSO339G2411' => 'pso', 'PSO339G2457' => 'pso', 'PSO339G2854' => 'pso', 'PSO339G4288' => 'pso', 'PSO339G4615' => 'pso', 'PSO384G2796' => 'pso', 'PSO384G2940' => 'pso', 'PSO384G4227' => 'pso', 'PSO478G1425' => 'pso', 'PSO541G3863' => 'pso', 'PSO675G0507' => 'pso', 'PSO782G0338' => 'pso', 'PSO832G0644' => 'pso', 'QL01p013664' => 'qlo', 'QL01p036598' => 'qlo', 'QL05p072984' => 'qlo', 'QL08p005768' => 'qlo', 'QL08p032743' => 'qlo', 'QL93p0073_0439' => 'qlo', 'QL93p0073_0444' => 'qlo', 'RcHm_v2.0_Chr5g0002851' => 'rch', 'RcHm_v2.0_Chr5g0055201' => 'rch', 'RcHm_v2.0_Chr5g0061191' => 'rch', 'RcHm_v2.0_Chr7g0203231' => 'rch', 'Rhsim01G0208100' => 'rsi', 'Rhsim01G0208200' => 'rsi', 'Rhsim02G0106500' => 'rsi', 'Rhsim03G0107900' => 'rsi', 'Rhsim06G0163400' => 'rsi', 'Rhsim13G0105200' => 'rsi', 'Sabra04G0006300' => 'sbr', 'Sabra04G0127000' => 'sbr', 'Sabra08G0148700' => 'sbr', 'Sabra09G0117400' => 'sbr', 'SalBow1G3326' => 'sbo', 'SalBow3G3228' => 'sbo', 'SalBow6G1634' => 'sbo', 'SalBow6G3603' => 'sbo', 'SalBow6G5266' => 'sbo', 'SalBow7G2265' => 'sbo', 'SalBow8G0850' => 'sbo', 'SalBow8G2592' => 'sbo', 'Sc05g0009240' => 'sci', 'Sc12g0002300' => 'sci', 'Sc21g0000100' => 'sci', 'Sc21g0004720' => 'sci', 'Sed0002949' => 'sed', 'Sed0004114' => 'sed', 'Sed0004306' => 'sed', 'Sed0006172' => 'sed', 'Sed0008413' => 'sed', 'Sed0013809' => 'sed', 'Sed0019556' => 'sed', 'SEGI_03570' => 'sgi', 'SEGI_07859' => 'sgi', 'SEGI_15042' => 'sgi', 'SEGI_16263' => 'sgi', 'SEGI_16552' => 'sgi', 'SEGI_24331' => 'sgi', 'SEGI_27316' => 'sgi', 'SEGI_29521' => 'sgi', 'SEGI_41342' => 'sgi', 'SGA_v2.0_scaffold27G11617' => 'sas', 'SGA_v2.0_scaffold316G48428' => 'sas', 'SGA_v2.0_scaffold49G18261' => 'sas', 'SGA_v2.0_scaffold7G03831' => 'sas', 'SGA_v2.0_scaffold93G28359' => 'sas', 'SHI02210' => 'shi', 'SHI06028' => 'shi', 'SHI06321' => 'shi', 'SMO111G0012' => 'smo', 'SMO228G0080' => 'smo', 'SMO356G0756' => 'smo', 'Solyc02g080620.3' => 'sly', 'Solyc06g074530.1' => 'sly', 'Solyc11g066890.1' => 'sly', 'Solyc11g072520.3' => 'sly', 'Sopen02g025330' => 'spe', 'Sopen06g031000' => 'spe', 'Sopen09g008240' => 'spe', 'Sopen09g025210' => 'spe', 'Sopen11g026600' => 'spe', 'Sopen11g030170' => 'spe', 'Sp1g10420' => 'spa', 'Sp3g06570' => 'spa', 'Sp4g10660' => 'spa', 'Sp5g16460' => 'spa', 'Sp6g22710' => 'spa', 'TAR365G0112' => 'tar', 'TAR369G0717' => 'tar', 'TAR374G0976' => 'tar', 'TAR623G1128' => 'tar', 'TAR626G1937' => 'tar', 'TAR627G0123' => 'tar', 'TAR628G0305' => 'tar', 'TAR636G1176' => 'tar', 'TAR636G2442' => 'tar', 'THA.LOC104800556' => 'tha', 'THA.LOC104809501' => 'tha', 'THA.LOC104815126' => 'tha', 'THA.LOC104815732' => 'tha', 'THA.LOC104823528' => 'tha', 'Thecc.02G365600' => 'tca', 'Thecc.06G222300' => 'tca', 'Thecc.09G261800' => 'tca', 'Thecc.09G291400' => 'tca', 'Thhalv10003028m.g' => 'esa', 'Thhalv10007886m.g' => 'esa', 'Thhalv10016085m.g' => 'esa', 'Thhalv10016681m.g' => 'esa', 'Thhalv10020951m.g' => 'esa', 'TPR.G15598' => 'tpr', 'TPR.G29305' => 'tpr', 'TPR.G32395' => 'tpr', 'TPR.G36998' => 'tpr', 'TPR.G4227' => 'tpr', 'TWI18G1433' => 'twi', 'TWI31G0755' => 'twi', 'TWI38G0912' => 'twi', 'TWI75G1097' => 'twi', 'TWI75G1619' => 'twi', 'TWI79G1336' => 'twi', 'unitig_0.g943' => 'ugi', 'unitig_0.g944' => 'ugi', 'unitig_22.g6646' => 'ugi', 'unitig_37.g12681' => 'ugi', 'unitig_8.g3290' => 'ugi', 'vmacro03278' => 'vma', 'vmacro12197' => 'vma', 'vmacro14478' => 'vma', 'vmacro15787' => 'vma', 'vmacro15789' => 'vma', 'vmacro15790' => 'vma', 'vmacro15806' => 'vma', 'vmacro22907' => 'vma', 'vmacro22908' => 'vma', 'vmacro22909' => 'vma', 'vmacro23108' => 'vma', 'VMungo0540G0540' => 'vmu', 'VMungo0540G2468' => 'vmu', 'VMungo1080G0390' => 'vmu', 'VMungo1080G1165' => 'vmu', 'VMungo1127G0170' => 'vmu', 'VMungo1127G2099' => 'vmu', 'VMungo1215G3013' => 'vmu', 'Zm00001eb013110' => 'zma', 'Zm00001eb084260' => 'zma', 'Zm00001eb096110' => 'zma', 'Zm00001eb217510' => 'zma', 'Zm00001eb322550' => 'zma', 'Zm00001eb390770' => 'zma', 'Zm00001eb397170' => 'zma', 'Zm00001eb404610' => 'zma', 'Zm00001eb421790' => 'zma' ) $gf_id = 'HOM05D000911' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000911' ) $data_identifier = 'HOM05D000911' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 16, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 5, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 6, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 8, 'nnu' => (int) 16, 'oeu' => (int) 8, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 5, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 16, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421790' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000911', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27780' => 'bna', 'A03p35380' => 'bna', 'A04p21160' => 'bna', 'A05p40570' => 'bna', 'A06p26900' => 'bna', 'A08p33230' => 'bna', 'A09p65960' => 'bna', 'A10p18290' => 'bna', 'Aa31LG1G12990' => 'aar', 'Aa31LG1G2980' => 'aar', 'Aa31LG4G14320' => 'aar', 'Aa31LG7G11800' => 'aar', 'Aa31sc36G50' => 'aar', 'Aa31sc36G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3721' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5459' => 'aag', 'Actinidia03028' => 'ach', 'Actinidia03753' => 'ach', 'Actinidia04187' => 'ach', 'Actinidia05509' => 'ach', 'Actinidia24180' => 'ach', 'Actinidia26906' => 'ach', 'Actinidia37097' => 'ach', 'Actinidia38249' => 'ach', 'Ah.01g003470' => 'amhyb', 'Ah.01g004580' => 'amhyb', 'Ah.01g014850' => 'amhyb', 'Ah.01g016830' => 'amhyb', 'Ah.14g088000' => 'amhyb', 'AL1G22980' => 'aly', 'AL3G18990' => 'aly', 'AL4G22440' => 'aly', 'AL4G33180' => 'aly', 'AL5G22920' => 'aly', 'AL6G33660' => 'aly', 'AL8G20720' => 'aly', 'Aqoxy1G00935' => 'aox', 'Aqoxy1G02094' => 'aox', 'Aqoxy2G01239' => 'aox', 'Aqoxy4G01870' => 'aox', 'Aqoxy7G00450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.36ZVTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71EM27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5D6C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH3WRE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3NCM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RIM768' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YB5YRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z36GDV' => 'arhy', 'AT1G08250' => 'ath', 'AT1G11790' => 'ath', 'AT2G27820' => 'ath', 'AT3G07630' => 'ath', 'AT3G44720' => 'ath', 'AT5G22630' => 'ath', 'ATR0693G304' => 'atr', 'ATR0794G109' => 'atr', 'ATR0820G120' => 'atr', 'ATR1159G064' => 'atr', 'Atru.chr10.2239' => 'acertr', 'Atru.chr3.3371' => 'acertr', 'Atru.chr6.3202' => 'acertr', 'AUR62006499' => 'cqu', 'AUR62012718' => 'cqu', 'AUR62021938' => 'cqu', 'AUR62023932' => 'cqu', 'AUR62025034' => 'cqu', 'AUR62025035' => 'cqu', 'AUR62038307' => 'cqu', 'AUR62043466' => 'cqu', 'BcaB02g10748' => 'bca', 'BcaB03g13231' => 'bca', 'BcaB03g14689' => 'bca', 'BcaB05g22716' => 'bca', 'BcaB06g28172' => 'bca', 'BcaB08g36413' => 'bca', 'BcaC01g02186' => 'bca', 'BcaC01g04272' => 'bca', 'BcaC02g08080' => 'bca', 'BcaC02g08227' => 'bca', 'BcaC03g13901' => 'bca', 'BcaC04g19593' => 'bca', 'BcaC04g20874' => 'bca', 'BcaC05g29557' => 'bca', 'BcaC06g35505' => 'bca', 'BcaC07g41954' => 'bca', 'BcaC07g41955' => 'bca', 'BcaC07g41956' => 'bca', 'BcaC07g42519' => 'bca', 'BcaC07g42520' => 'bca', 'BcaC07g42523' => 'bca', 'BcaC07g42524' => 'bca', 'BcaC07g42525' => 'bca', 'BcaC08g47480' => 'bca', 'BcaC08g47481' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00530' => 'bna', 'BolC2t07178H' => 'bol', 'BolC3t16567H' => 'bol', 'BolC4t27234H' => 'bol', 'BolC5t29728H' => 'bol', 'BolC5t34622H' => 'bol', 'BolC6t40321H' => 'bol', 'BolC7t42028H' => 'bol', 'BolC8t49125H' => 'bol', 'BolC8t52538H' => 'bol', 'BolC8t52539H' => 'bol', 'BolC9t56681H' => 'bol', 'BolC9t58266H' => 'bol', 'BolSC21t60294H' => 'bol', 'BraA02t05670Z' => 'bra', 'BraA03t12716Z' => 'bra', 'BraA04t17685Z' => 'bra', 'BraA05t22788Z' => 'bra', 'BraA06t24032Z' => 'bra', 'BraA06t25625Z' => 'bra', 'BraA07t27930Z' => 'bra', 'BraA08t35242Z' => 'bra', 'BraA09t38609Z' => 'bra', 'BraA10t43905Z' => 'bra', 'C02p11060' => 'bna', 'C03p42990' => 'bna', 'C03p67310' => 'bna', 'C04p56990' => 'bna', 'C04p58660' => 'bna', 'C05p09890' => 'bna', 'C05p59680' => 'bna', 'C06p19830' => 'bna', 'C06p53040' => 'bna', 'C07p15230' => 'bna', 'C08p50070' => 'bna', 'C08p50090' => 'bna', 'C09p38330' => 'bna', 'C09p53940' => 'bna', 'CAN.G1014.1' => 'can', 'CAN.G644.30' => 'can', 'CAN.G84.47' => 'can', 'CAN.G919.8' => 'can', 'CANSAT54G0113' => 'cansat', 'CANSAT54G1286' => 'cansat', 'CANSAT64G1020' => 'cansat', 'CARHR008080' => 'chi', 'CARHR008090' => 'chi', 'CARHR012130' => 'chi', 'CARHR038390' => 'chi', 'CARHR082330' => 'chi', 'CARHR120520' => 'chi', 'CARHR151470' => 'chi', 'CARHR190950' => 'chi', 'Carub.0001s0760' => 'cru', 'Carub.0001s1146' => 'cru', 'Carub.0003s0721' => 'cru', 'Carub.0004s0858' => 'cru', 'Carub.0005s1040' => 'cru', 'Carub.0006s2035' => 'cru', 'Carub.0015s0005' => 'cru', 'Ca_01607_v3' => 'car', 'Ca_01677_v3' => 'car', 'Ca_06087_v3' => 'car', 'Ca_19238_v3' => 'car', 'Ca_19373_v3' => 'car', 'Ca_21079_v3' => 'car', 'CBR_g54016' => 'cbr', 'CBR_g54018' => 'cbr', 'CBR_g54020' => 'cbr', 'Cc01_g09780' => 'ccan', 'Cc01_g11680' => 'ccan', 'Cc02_g15610' => 'ccan', 'Cc05_g04350' => 'ccan', 'Cc09_g01580' => 'ccan', 'CDE01G0795' => 'cde', 'CDE02G2024' => 'cde', 'CDE02G2260' => 'cde', 'CDE02G4561' => 'cde', 'CDE05G2733' => 'cde', 'CDE05G3422' => 'cde', 'CDE06G2003' => 'cde', 'CDE08G0576' => 'cde', 'CDE09G0048' => 'cde', 'CDE11G0805' => 'cde', 'Cfa003644' => 'cfa', 'Cfa006290' => 'cfa', 'Cfa010080' => 'cfa', 'Cfa011376' => 'cfa', 'Cfa011576' => 'cfa', 'Cfa011577' => 'cfa', 'Cfa014389' => 'cfa', 'Ciclev10006044m.g' => 'ccl', 'Ciclev10006954m.g' => 'ccl', 'Ciclev10015131m.g' => 'ccl', 'Ciclev10015580m.g' => 'ccl', 'Ciclev10028359m.g' => 'ccl', 'Ciclev10028573m.g' => 'ccl', 'CiPaw.03G159300' => 'cil', 'CiPaw.04G115100' => 'cil', 'CiPaw.09G092800' => 'cil', 'CiPaw.10G071800' => 'cil', 'CiPaw.13G105800' => 'cil', 'CiPaw.13G141000' => 'cil', 'CiPaw.14G103400' => 'cil', 'ClCG01G012700' => 'cla', 'ClCG01G012720' => 'cla', 'ClCG01G021920' => 'cla', 'ClCG02G008870' => 'cla', 'ClCG02G020840' => 'cla', 'ClCG02G021930' => 'cla', 'COL.COLO4_19302' => 'col', 'COL.COLO4_25262' => 'col', 'COL.COLO4_31788' => 'col', 'Cpa.g.c34684' => 'cpa', 'Cpa.g.c36520.1' => 'cpa', 'Cpa.g.c45626' => 'cpa', 'Cpa.g.sc121.17' => 'cpa', 'Cpa.g.sc13.22' => 'cpa', 'Cpa.g.sc87.88' => 'cpa', 'Cre06.g261800' => 'cre', 'CsaV3_1G014500' => 'csa', 'CsaV3_1G014510' => 'csa', 'CsaV3_2G034880' => 'csa', 'CsaV3_6G014760' => 'csa', 'CsaV3_6G021500' => 'csa', 'CsaV3_6G048980' => 'csa', 'CSS0002511' => 'camsi', 'CSS0007556' => 'camsi', 'CSS0008532' => 'camsi', 'CSS0009709' => 'camsi', 'CSS0010486' => 'camsi', 'CSS0016768' => 'camsi', 'CSS0023512' => 'camsi', 'CSS0025341' => 'camsi', 'CSS0027999' => 'camsi', 'CSS0028944' => 'camsi', 'CSS0032292' => 'camsi', 'CSS0032464' => 'camsi', 'CSS0037153' => 'camsi', 'CSS0039256' => 'camsi', 'CSS0048392' => 'camsi', 'CSS0050458' => 'camsi', 'DCAR_004224' => 'dca', 'DCAR_006147' => 'dca', 'DCAR_006465' => 'dca', 'DCAR_008159' => 'dca', 'DCAR_012164' => 'dca', 'DCAR_019764' => 'dca', 'Dinv05418' => 'din', 'Dinv10839' => 'din', 'Dinv12521' => 'din', 'Dinv13900' => 'din', 'Dinv29426' => 'din', 'Duzib150G0263' => 'dzi', 'Duzib168G1178' => 'dzi', 'Duzib168G1924' => 'dzi', 'Duzib170G0299' => 'dzi', 'Duzib170G0813' => 'dzi', 'Duzib235G1128' => 'dzi', 'Duzib248G1060' => 'dzi', 'ECA232G1910' => 'eca', 'ECA233G4621' => 'eca', 'ECA238G1216' => 'eca', 'ECA238G1784' => 'eca', 'ECA248G1242' => 'eca', 'EL10Ac8g20071' => 'bvu', 'EL10Ac9g21086' => 'bvu', 'EL10Ac9g22407' => 'bvu', 'EL10Ac9g22412' => 'bvu', 'Eucgr.A01119' => 'egr', 'Eucgr.E04043' => 'egr', 'Eucgr.J00428' => 'egr', 'Eucgr.J00958' => 'egr', 'FAN11G3091' => 'fan', 'FAN11G3651' => 'fan', 'FAN16G2566' => 'fan', 'FAN21G3155' => 'fan', 'FAN21G3400' => 'fan', 'FAN21G3543' => 'fan', 'FAN25G0234' => 'fan', 'FAN25G1422' => 'fan', 'FAN25G3392' => 'fan', 'FvH4_3g01940' => 'fve', 'FvH4_3g29870' => 'fve', 'FvH4_3g33680' => 'fve', 'Glyma.09G004200' => 'gma', 'Glyma.11G151288' => 'gma', 'Glyma.11G189100' => 'gma', 'Glyma.12G072500' => 'gma', 'Glyma.12G085500' => 'gma', 'Glyma.12G181800' => 'gma', 'Glyma.12G193000' => 'gma', 'Glyma.13G309300' => 'gma', 'Glyma.13G319000' => 'gma', 'Glyma.17G012600' => 'gma', 'Gohir.A06G148600' => 'ghi', 'Gohir.A07G115800' => 'ghi', 'Gohir.A08G003600' => 'ghi', 'Gohir.A09G093300' => 'ghi', 'Gohir.A09G105400' => 'ghi', 'Gohir.A09G105500' => 'ghi', 'Gohir.D06G154600' => 'ghi', 'Gohir.D07G120200' => 'ghi', 'Gohir.D08G013900' => 'ghi', 'Gohir.D09G093100' => 'ghi', 'Gohir.D09G102200' => 'ghi', 'Gohir.D09G102300' => 'ghi', 'Gorai.001G129400' => 'gra', 'Gorai.004G008200' => 'gra', 'Gorai.006G109800' => 'gra', 'Gorai.006G119500' => 'gra', 'Gorai.006G121300' => 'gra', 'Gorai.010G180700' => 'gra', 'GSVIVG01012716001' => 'vvi', 'GSVIVG01025118001' => 'vvi', 'GSVIVG01030439001' => 'vvi', 'GSVIVG01031397001' => 'vvi', 'HanXRQChr01g0004201' => 'han', 'HanXRQChr02g0054941' => 'han', 'HanXRQChr05g0141811' => 'han', 'HanXRQChr07g0197751' => 'han', 'HanXRQChr11g0346691' => 'han', 'HanXRQChr13g0396971' => 'han', 'HanXRQChr14g0432951' => 'han', 'HanXRQChr14g0452001' => 'han', 'HanXRQChr15g0496681' => 'han', 'HanXRQChr17g0557491' => 'han', 'HanXRQChr17g0557501' => 'han', 'Haze_06809' => 'cav', 'Haze_12852' => 'cav', 'Haze_15850' => 'cav', 'Haze_23446' => 'cav', 'Haze_23942' => 'cav', 'Haze_23943' => 'cav', 'Hma1.2p1_0091F.1_g046450' => 'hma', 'Hma1.2p1_0128F.1_g059910' => 'hma', 'Hma1.2p1_0249F.1_g102260' => 'hma', 'Hma1.2p1_0453F.1_g156190' => 'hma', 'Hma1.2p1_0695F.1_g204380' => 'hma', 'Hma1.2p1_0749F.1_g212650' => 'hma', 'Hma1.2p1_2156F.1_g315420' => 'hma', 'Hma1.2p1_2686F.1_g326940' => 'hma', 'HPP92_006428' => 'vpl', 'HPP92_012069' => 'vpl', 'HPP92_014129' => 'vpl', 'HPP92_014133' => 'vpl', 'HPP92_017315' => 'vpl', 'HPP92_026445' => 'vpl', 'HPP92_026446' => 'vpl', 'Hund00774' => 'sun', 'Hund07682' => 'sun', 'Hund21413' => 'sun', 'Hund23462' => 'sun', 'Hund23463' => 'sun', 'Lalb_Chr03g0027911' => 'lal', 'Lalb_Chr13g0304271' => 'lal', 'Lalb_Chr19g0137471' => 'lal', 'Lalb_Chr22g0350651' => 'lal', 'Lalb_Chr24g0395151' => 'lal', 'Lj1A1231T40' => 'lonja', 'Lj1A221T48' => 'lonja', 'Lj1C924T12' => 'lonja', 'Lj2C993G6' => 'lonja', 'Lj3g0005790' => 'lja', 'Lj3g0015432' => 'lja', 'Lj3g0017722' => 'lja', 'Lj3g0018497' => 'lja', 'Lj4g0025071' => 'lja', 'Lsat_1_v5_gn_1_129680' => 'lsa', 'Lsat_1_v5_gn_2_25321' => 'lsa', 'Lsat_1_v5_gn_2_95461' => 'lsa', 'Lsat_1_v5_gn_4_159620' => 'lsa', 'Lsat_1_v5_gn_6_41301' => 'lsa', 'Lsat_1_v5_gn_6_74660' => 'lsa', 'Lsat_1_v5_gn_7_11520' => 'lsa', 'Lsat_1_v5_gn_9_67680' => 'lsa', 'Manes.04G008300' => 'mes', 'Manes.04G008400' => 'mes', 'Manes.04G026500' => 'mes', 'Manes.10G135300' => 'mes', 'Manes.11G157300' => 'mes', 'Manes.12G074000' => 'mes', 'Manes.16G006200' => 'mes', 'Manes.17G026400' => 'mes', 'Mapoly0024s0086' => 'mpo', 'Mapoly0024s0087' => 'mpo', 'Mapoly0071s0057' => 'mpo', 'Mapoly0204s0012' => 'mpo', 'MBI04_g37681_MAGBIO' => 'mbi', 'MBI05_g17779_MAGBIO' => 'mbi', 'MBI12_g31184_MAGBIO' => 'mbi', 'MBI17_g11083_MAGBIO' => 'mbi', 'MBI18_g03883_MAGBIO' => 'mbi', 'MBI18_g28940_MAGBIO' => 'mbi', 'MCO01G690' => 'mco', 'MD03G1109900' => 'mdo', 'MD03G1134800' => 'mdo', 'MD05G1348000' => 'mdo', 'MD10G1322400' => 'mdo', 'MD11G1123300' => 'mdo', 'MD11G1157600' => 'mdo', 'Medtr2g084875' => 'mtr', 'Medtr2g088130' => 'mtr', 'Medtr4g055310' => 'mtr', 'Medtr4g061070' => 'mtr', 'Medtr4g132250' => 'mtr', 'MELO3C004795.2' => 'cme', 'MELO3C004797.2' => 'cme', 'MELO3C007396.2' => 'cme', 'MELO3C019277.2' => 'cme', 'MELO3C021449.2' => 'cme', 'MELO3C025736.2' => 'cme', 'Migut.D02175' => 'egut', 'Migut.H01573' => 'egut', 'Migut.M01327' => 'egut', 'Migut.N02513' => 'egut', 'MSTRG.14638' => 'ama', 'MSTRG.18632' => 'ama', 'MSTRG.7203' => 'ama', 'Nitab4.5_0000533g0140' => 'nta', 'Nitab4.5_0000888g0150' => 'nta', 'Nitab4.5_0001453g0040' => 'nta', 'Nitab4.5_0002827g0090' => 'nta', 'Nitab4.5_0003082g0040' => 'nta', 'Nitab4.5_0007799g0040' => 'nta', 'Nitab4.5_0008983g0010' => 'nta', 'Nitab4.5_0009017g0020' => 'nta', 'Nn1g02132' => 'nnu', 'Nn1g03492' => 'nnu', 'Nn1g03493' => 'nnu', 'Nn1g03494' => 'nnu', 'Nn1g07164' => 'nnu', 'Nn1g07291' => 'nnu', 'Nn2g10655' => 'nnu', 'Nn2g11652' => 'nnu', 'Nn2g14008' => 'nnu', 'Nn3g17476' => 'nnu', 'Nn3g17477' => 'nnu', 'Nn4g22370' => 'nnu', 'Nn4g25255' => 'nnu', 'Nn5g27755' => 'nnu', 'Nn6g34260' => 'nnu', 'Nn6g35041' => 'nnu', 'Oeu005924.1' => 'oeu', 'Oeu008383.1' => 'oeu', 'Oeu014928.1' => 'oeu', 'Oeu019889.1' => 'oeu', 'Oeu022271.1' => 'oeu', 'Oeu025271.1' => 'oeu', 'Oeu036302.1' => 'oeu', 'Oeu044100.1' => 'oeu', 'Os01g0528300' => 'osa', 'Os03g0286200' => 'osa', 'Os04g0406600' => 'osa', 'Os07g0512000' => 'osa', 'Os07g0694600' => 'osa', 'Os08g0411000' => 'osa', 'Os09g0565700' => 'osa', 'Os09g0566050' => 'osa', 'Os10g0523700' => 'osa', 'Peaxi162Scf00002g00514' => 'pax', 'Peaxi162Scf00047g01817' => 'pax', 'Peaxi162Scf00114g00001' => 'pax', 'Peaxi162Scf00147g00613' => 'pax', 'Peaxi162Scf00389g00425' => 'pax', 'PGR042G1139' => 'pgr', 'PGR042G3273' => 'pgr', 'PGR102G2180' => 'pgr', 'PGR119G0234' => 'pgr', 'PGR119G0668' => 'pgr', 'PGSC0003DMG400007122' => 'stu', 'PGSC0003DMG400016478' => 'stu', 'PGSC0003DMG400025374' => 'stu', 'PGSC0003DMG400026536' => 'stu', 'Phvul.003G079600' => 'pvu', 'Phvul.005G115600' => 'pvu', 'Phvul.005G127100' => 'pvu', 'Phvul.006G149500' => 'pvu', 'Phvul.006G149600' => 'pvu', 'Phvul.011G071800' => 'pvu', 'Phvul.011G090400' => 'pvu', 'Potri.004G013400' => 'ptr', 'Potri.004G188100' => 'ptr', 'Potri.008G195500' => 'ptr', 'Potri.009G148800' => 'ptr', 'Potri.011G004700' => 'ptr', 'Pp3c17_22810' => 'ppa', 'Pp3c18_4480' => 'ppa', 'Pp3c19_13030' => 'ppa', 'Pp3c1_33620' => 'ppa', 'Pp3c2_9380' => 'ppa', 'PRCOL_00001023' => 'pco', 'Prupe.3G216300' => 'ppe', 'Prupe.4G019500' => 'ppe', 'Prupe.6G092500' => 'ppe', 'Prupe.6G119200' => 'ppe', 'Psat0s1945g0080' => 'psa', 'Psat0s4167g0040' => 'psa', 'Psat1g185800' => 'psa', 'Psat4g006440' => 'psa', 'Psat4g006480' => 'psa', 'Psat4g168120' => 'psa', 'Psat5g255680' => 'psa', 'Psat5g261760' => 'psa', 'Psat7g222120' => 'psa', 'PSO063G7252' => 'pso', 'PSO170G4778' => 'pso', 'PSO210G2249' => 'pso', 'PSO339G2411' => 'pso', 'PSO339G2457' => 'pso', 'PSO339G2854' => 'pso', 'PSO339G4288' => 'pso', 'PSO339G4615' => 'pso', 'PSO384G2796' => 'pso', 'PSO384G2940' => 'pso', 'PSO384G4227' => 'pso', 'PSO478G1425' => 'pso', 'PSO541G3863' => 'pso', 'PSO675G0507' => 'pso', 'PSO782G0338' => 'pso', 'PSO832G0644' => 'pso', 'QL01p013664' => 'qlo', 'QL01p036598' => 'qlo', 'QL05p072984' => 'qlo', 'QL08p005768' => 'qlo', 'QL08p032743' => 'qlo', 'QL93p0073_0439' => 'qlo', 'QL93p0073_0444' => 'qlo', 'RcHm_v2.0_Chr5g0002851' => 'rch', 'RcHm_v2.0_Chr5g0055201' => 'rch', 'RcHm_v2.0_Chr5g0061191' => 'rch', 'RcHm_v2.0_Chr7g0203231' => 'rch', 'Rhsim01G0208100' => 'rsi', 'Rhsim01G0208200' => 'rsi', 'Rhsim02G0106500' => 'rsi', 'Rhsim03G0107900' => 'rsi', 'Rhsim06G0163400' => 'rsi', 'Rhsim13G0105200' => 'rsi', 'Sabra04G0006300' => 'sbr', 'Sabra04G0127000' => 'sbr', 'Sabra08G0148700' => 'sbr', 'Sabra09G0117400' => 'sbr', 'SalBow1G3326' => 'sbo', 'SalBow3G3228' => 'sbo', 'SalBow6G1634' => 'sbo', 'SalBow6G3603' => 'sbo', 'SalBow6G5266' => 'sbo', 'SalBow7G2265' => 'sbo', 'SalBow8G0850' => 'sbo', 'SalBow8G2592' => 'sbo', 'Sc05g0009240' => 'sci', 'Sc12g0002300' => 'sci', 'Sc21g0000100' => 'sci', 'Sc21g0004720' => 'sci', 'Sed0002949' => 'sed', 'Sed0004114' => 'sed', 'Sed0004306' => 'sed', 'Sed0006172' => 'sed', 'Sed0008413' => 'sed', 'Sed0013809' => 'sed', 'Sed0019556' => 'sed', 'SEGI_03570' => 'sgi', 'SEGI_07859' => 'sgi', 'SEGI_15042' => 'sgi', 'SEGI_16263' => 'sgi', 'SEGI_16552' => 'sgi', 'SEGI_24331' => 'sgi', 'SEGI_27316' => 'sgi', 'SEGI_29521' => 'sgi', 'SEGI_41342' => 'sgi', 'SGA_v2.0_scaffold27G11617' => 'sas', 'SGA_v2.0_scaffold316G48428' => 'sas', 'SGA_v2.0_scaffold49G18261' => 'sas', 'SGA_v2.0_scaffold7G03831' => 'sas', 'SGA_v2.0_scaffold93G28359' => 'sas', 'SHI02210' => 'shi', 'SHI06028' => 'shi', 'SHI06321' => 'shi', 'SMO111G0012' => 'smo', 'SMO228G0080' => 'smo', 'SMO356G0756' => 'smo', 'Solyc02g080620.3' => 'sly', 'Solyc06g074530.1' => 'sly', 'Solyc11g066890.1' => 'sly', 'Solyc11g072520.3' => 'sly', 'Sopen02g025330' => 'spe', 'Sopen06g031000' => 'spe', 'Sopen09g008240' => 'spe', 'Sopen09g025210' => 'spe', 'Sopen11g026600' => 'spe', 'Sopen11g030170' => 'spe', 'Sp1g10420' => 'spa', 'Sp3g06570' => 'spa', 'Sp4g10660' => 'spa', 'Sp5g16460' => 'spa', 'Sp6g22710' => 'spa', 'TAR365G0112' => 'tar', 'TAR369G0717' => 'tar', 'TAR374G0976' => 'tar', 'TAR623G1128' => 'tar', 'TAR626G1937' => 'tar', 'TAR627G0123' => 'tar', 'TAR628G0305' => 'tar', 'TAR636G1176' => 'tar', 'TAR636G2442' => 'tar', 'THA.LOC104800556' => 'tha', 'THA.LOC104809501' => 'tha', 'THA.LOC104815126' => 'tha', 'THA.LOC104815732' => 'tha', 'THA.LOC104823528' => 'tha', 'Thecc.02G365600' => 'tca', 'Thecc.06G222300' => 'tca', 'Thecc.09G261800' => 'tca', 'Thecc.09G291400' => 'tca', 'Thhalv10003028m.g' => 'esa', 'Thhalv10007886m.g' => 'esa', 'Thhalv10016085m.g' => 'esa', 'Thhalv10016681m.g' => 'esa', 'Thhalv10020951m.g' => 'esa', 'TPR.G15598' => 'tpr', 'TPR.G29305' => 'tpr', 'TPR.G32395' => 'tpr', 'TPR.G36998' => 'tpr', 'TPR.G4227' => 'tpr', 'TWI18G1433' => 'twi', 'TWI31G0755' => 'twi', 'TWI38G0912' => 'twi', 'TWI75G1097' => 'twi', 'TWI75G1619' => 'twi', 'TWI79G1336' => 'twi', 'unitig_0.g943' => 'ugi', 'unitig_0.g944' => 'ugi', 'unitig_22.g6646' => 'ugi', 'unitig_37.g12681' => 'ugi', 'unitig_8.g3290' => 'ugi', 'vmacro03278' => 'vma', 'vmacro12197' => 'vma', 'vmacro14478' => 'vma', 'vmacro15787' => 'vma', 'vmacro15789' => 'vma', 'vmacro15790' => 'vma', 'vmacro15806' => 'vma', 'vmacro22907' => 'vma', 'vmacro22908' => 'vma', 'vmacro22909' => 'vma', 'vmacro23108' => 'vma', 'VMungo0540G0540' => 'vmu', 'VMungo0540G2468' => 'vmu', 'VMungo1080G0390' => 'vmu', 'VMungo1080G1165' => 'vmu', 'VMungo1127G0170' => 'vmu', 'VMungo1127G2099' => 'vmu', 'VMungo1215G3013' => 'vmu', 'Zm00001eb013110' => 'zma', 'Zm00001eb084260' => 'zma', 'Zm00001eb096110' => 'zma', 'Zm00001eb217510' => 'zma', 'Zm00001eb322550' => 'zma', 'Zm00001eb390770' => 'zma', 'Zm00001eb397170' => 'zma', 'Zm00001eb404610' => 'zma', 'Zm00001eb421790' => 'zma' ), 'gf_id' => 'HOM05D000911', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000911' ), 'data_identifier' => 'HOM05D000911', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000911', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27780' => 'bna', 'A03p35380' => 'bna', 'A04p21160' => 'bna', 'A05p40570' => 'bna', 'A06p26900' => 'bna', 'A08p33230' => 'bna', 'A09p65960' => 'bna', 'A10p18290' => 'bna', 'Aa31LG1G12990' => 'aar', 'Aa31LG1G2980' => 'aar', 'Aa31LG4G14320' => 'aar', 'Aa31LG7G11800' => 'aar', 'Aa31sc36G50' => 'aar', 'Aa31sc36G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3721' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5459' => 'aag', 'Actinidia03028' => 'ach', 'Actinidia03753' => 'ach', 'Actinidia04187' => 'ach', 'Actinidia05509' => 'ach', 'Actinidia24180' => 'ach', 'Actinidia26906' => 'ach', 'Actinidia37097' => 'ach', 'Actinidia38249' => 'ach', 'Ah.01g003470' => 'amhyb', 'Ah.01g004580' => 'amhyb', 'Ah.01g014850' => 'amhyb', 'Ah.01g016830' => 'amhyb', 'Ah.14g088000' => 'amhyb', 'AL1G22980' => 'aly', 'AL3G18990' => 'aly', 'AL4G22440' => 'aly', 'AL4G33180' => 'aly', 'AL5G22920' => 'aly', 'AL6G33660' => 'aly', 'AL8G20720' => 'aly', 'Aqoxy1G00935' => 'aox', 'Aqoxy1G02094' => 'aox', 'Aqoxy2G01239' => 'aox', 'Aqoxy4G01870' => 'aox', 'Aqoxy7G00450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.36ZVTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71EM27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5D6C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH3WRE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3NCM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RIM768' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YB5YRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z36GDV' => 'arhy', 'AT1G08250' => 'ath', 'AT1G11790' => 'ath', 'AT2G27820' => 'ath', 'AT3G07630' => 'ath', 'AT3G44720' => 'ath', 'AT5G22630' => 'ath', 'ATR0693G304' => 'atr', 'ATR0794G109' => 'atr', 'ATR0820G120' => 'atr', 'ATR1159G064' => 'atr', 'Atru.chr10.2239' => 'acertr', 'Atru.chr3.3371' => 'acertr', 'Atru.chr6.3202' => 'acertr', 'AUR62006499' => 'cqu', 'AUR62012718' => 'cqu', 'AUR62021938' => 'cqu', 'AUR62023932' => 'cqu', 'AUR62025034' => 'cqu', 'AUR62025035' => 'cqu', 'AUR62038307' => 'cqu', 'AUR62043466' => 'cqu', 'BcaB02g10748' => 'bca', 'BcaB03g13231' => 'bca', 'BcaB03g14689' => 'bca', 'BcaB05g22716' => 'bca', 'BcaB06g28172' => 'bca', 'BcaB08g36413' => 'bca', 'BcaC01g02186' => 'bca', 'BcaC01g04272' => 'bca', 'BcaC02g08080' => 'bca', 'BcaC02g08227' => 'bca', 'BcaC03g13901' => 'bca', 'BcaC04g19593' => 'bca', 'BcaC04g20874' => 'bca', 'BcaC05g29557' => 'bca', 'BcaC06g35505' => 'bca', 'BcaC07g41954' => 'bca', 'BcaC07g41955' => 'bca', 'BcaC07g41956' => 'bca', 'BcaC07g42519' => 'bca', 'BcaC07g42520' => 'bca', 'BcaC07g42523' => 'bca', 'BcaC07g42524' => 'bca', 'BcaC07g42525' => 'bca', 'BcaC08g47480' => 'bca', 'BcaC08g47481' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00530' => 'bna', 'BolC2t07178H' => 'bol', 'BolC3t16567H' => 'bol', 'BolC4t27234H' => 'bol', 'BolC5t29728H' => 'bol', 'BolC5t34622H' => 'bol', 'BolC6t40321H' => 'bol', 'BolC7t42028H' => 'bol', 'BolC8t49125H' => 'bol', 'BolC8t52538H' => 'bol', 'BolC8t52539H' => 'bol', 'BolC9t56681H' => 'bol', 'BolC9t58266H' => 'bol', 'BolSC21t60294H' => 'bol', 'BraA02t05670Z' => 'bra', 'BraA03t12716Z' => 'bra', 'BraA04t17685Z' => 'bra', 'BraA05t22788Z' => 'bra', 'BraA06t24032Z' => 'bra', 'BraA06t25625Z' => 'bra', 'BraA07t27930Z' => 'bra', 'BraA08t35242Z' => 'bra', 'BraA09t38609Z' => 'bra', 'BraA10t43905Z' => 'bra', 'C02p11060' => 'bna', 'C03p42990' => 'bna', 'C03p67310' => 'bna', 'C04p56990' => 'bna', 'C04p58660' => 'bna', 'C05p09890' => 'bna', 'C05p59680' => 'bna', 'C06p19830' => 'bna', 'C06p53040' => 'bna', 'C07p15230' => 'bna', 'C08p50070' => 'bna', 'C08p50090' => 'bna', 'C09p38330' => 'bna', 'C09p53940' => 'bna', 'CAN.G1014.1' => 'can', 'CAN.G644.30' => 'can', 'CAN.G84.47' => 'can', 'CAN.G919.8' => 'can', 'CANSAT54G0113' => 'cansat', 'CANSAT54G1286' => 'cansat', 'CANSAT64G1020' => 'cansat', 'CARHR008080' => 'chi', 'CARHR008090' => 'chi', 'CARHR012130' => 'chi', 'CARHR038390' => 'chi', 'CARHR082330' => 'chi', 'CARHR120520' => 'chi', 'CARHR151470' => 'chi', 'CARHR190950' => 'chi', 'Carub.0001s0760' => 'cru', 'Carub.0001s1146' => 'cru', 'Carub.0003s0721' => 'cru', 'Carub.0004s0858' => 'cru', 'Carub.0005s1040' => 'cru', 'Carub.0006s2035' => 'cru', 'Carub.0015s0005' => 'cru', 'Ca_01607_v3' => 'car', 'Ca_01677_v3' => 'car', 'Ca_06087_v3' => 'car', 'Ca_19238_v3' => 'car', 'Ca_19373_v3' => 'car', 'Ca_21079_v3' => 'car', 'CBR_g54016' => 'cbr', 'CBR_g54018' => 'cbr', 'CBR_g54020' => 'cbr', 'Cc01_g09780' => 'ccan', 'Cc01_g11680' => 'ccan', 'Cc02_g15610' => 'ccan', 'Cc05_g04350' => 'ccan', 'Cc09_g01580' => 'ccan', 'CDE01G0795' => 'cde', 'CDE02G2024' => 'cde', 'CDE02G2260' => 'cde', 'CDE02G4561' => 'cde', 'CDE05G2733' => 'cde', 'CDE05G3422' => 'cde', 'CDE06G2003' => 'cde', 'CDE08G0576' => 'cde', 'CDE09G0048' => 'cde', 'CDE11G0805' => 'cde', 'Cfa003644' => 'cfa', 'Cfa006290' => 'cfa', 'Cfa010080' => 'cfa', 'Cfa011376' => 'cfa', 'Cfa011576' => 'cfa', 'Cfa011577' => 'cfa', 'Cfa014389' => 'cfa', 'Ciclev10006044m.g' => 'ccl', 'Ciclev10006954m.g' => 'ccl', 'Ciclev10015131m.g' => 'ccl', 'Ciclev10015580m.g' => 'ccl', 'Ciclev10028359m.g' => 'ccl', 'Ciclev10028573m.g' => 'ccl', 'CiPaw.03G159300' => 'cil', 'CiPaw.04G115100' => 'cil', 'CiPaw.09G092800' => 'cil', 'CiPaw.10G071800' => 'cil', 'CiPaw.13G105800' => 'cil', 'CiPaw.13G141000' => 'cil', 'CiPaw.14G103400' => 'cil', 'ClCG01G012700' => 'cla', 'ClCG01G012720' => 'cla', 'ClCG01G021920' => 'cla', 'ClCG02G008870' => 'cla', 'ClCG02G020840' => 'cla', 'ClCG02G021930' => 'cla', 'COL.COLO4_19302' => 'col', 'COL.COLO4_25262' => 'col', 'COL.COLO4_31788' => 'col', 'Cpa.g.c34684' => 'cpa', 'Cpa.g.c36520.1' => 'cpa', 'Cpa.g.c45626' => 'cpa', 'Cpa.g.sc121.17' => 'cpa', 'Cpa.g.sc13.22' => 'cpa', 'Cpa.g.sc87.88' => 'cpa', 'Cre06.g261800' => 'cre', 'CsaV3_1G014500' => 'csa', 'CsaV3_1G014510' => 'csa', 'CsaV3_2G034880' => 'csa', 'CsaV3_6G014760' => 'csa', 'CsaV3_6G021500' => 'csa', 'CsaV3_6G048980' => 'csa', 'CSS0002511' => 'camsi', 'CSS0007556' => 'camsi', 'CSS0008532' => 'camsi', 'CSS0009709' => 'camsi', 'CSS0010486' => 'camsi', 'CSS0016768' => 'camsi', 'CSS0023512' => 'camsi', 'CSS0025341' => 'camsi', 'CSS0027999' => 'camsi', 'CSS0028944' => 'camsi', 'CSS0032292' => 'camsi', 'CSS0032464' => 'camsi', 'CSS0037153' => 'camsi', 'CSS0039256' => 'camsi', 'CSS0048392' => 'camsi', 'CSS0050458' => 'camsi', 'DCAR_004224' => 'dca', 'DCAR_006147' => 'dca', 'DCAR_006465' => 'dca', 'DCAR_008159' => 'dca', 'DCAR_012164' => 'dca', 'DCAR_019764' => 'dca', 'Dinv05418' => 'din', 'Dinv10839' => 'din', 'Dinv12521' => 'din', 'Dinv13900' => 'din', 'Dinv29426' => 'din', 'Duzib150G0263' => 'dzi', 'Duzib168G1178' => 'dzi', 'Duzib168G1924' => 'dzi', 'Duzib170G0299' => 'dzi', 'Duzib170G0813' => 'dzi', 'Duzib235G1128' => 'dzi', 'Duzib248G1060' => 'dzi', 'ECA232G1910' => 'eca', 'ECA233G4621' => 'eca', 'ECA238G1216' => 'eca', 'ECA238G1784' => 'eca', 'ECA248G1242' => 'eca', 'EL10Ac8g20071' => 'bvu', 'EL10Ac9g21086' => 'bvu', 'EL10Ac9g22407' => 'bvu', 'EL10Ac9g22412' => 'bvu', 'Eucgr.A01119' => 'egr', 'Eucgr.E04043' => 'egr', 'Eucgr.J00428' => 'egr', 'Eucgr.J00958' => 'egr', 'FAN11G3091' => 'fan', 'FAN11G3651' => 'fan', 'FAN16G2566' => 'fan', 'FAN21G3155' => 'fan', 'FAN21G3400' => 'fan', 'FAN21G3543' => 'fan', 'FAN25G0234' => 'fan', 'FAN25G1422' => 'fan', 'FAN25G3392' => 'fan', 'FvH4_3g01940' => 'fve', 'FvH4_3g29870' => 'fve', 'FvH4_3g33680' => 'fve', 'Glyma.09G004200' => 'gma', 'Glyma.11G151288' => 'gma', 'Glyma.11G189100' => 'gma', 'Glyma.12G072500' => 'gma', 'Glyma.12G085500' => 'gma', 'Glyma.12G181800' => 'gma', 'Glyma.12G193000' => 'gma', 'Glyma.13G309300' => 'gma', 'Glyma.13G319000' => 'gma', 'Glyma.17G012600' => 'gma', 'Gohir.A06G148600' => 'ghi', 'Gohir.A07G115800' => 'ghi', 'Gohir.A08G003600' => 'ghi', 'Gohir.A09G093300' => 'ghi', 'Gohir.A09G105400' => 'ghi', 'Gohir.A09G105500' => 'ghi', 'Gohir.D06G154600' => 'ghi', 'Gohir.D07G120200' => 'ghi', 'Gohir.D08G013900' => 'ghi', 'Gohir.D09G093100' => 'ghi', 'Gohir.D09G102200' => 'ghi', 'Gohir.D09G102300' => 'ghi', 'Gorai.001G129400' => 'gra', 'Gorai.004G008200' => 'gra', 'Gorai.006G109800' => 'gra', 'Gorai.006G119500' => 'gra', 'Gorai.006G121300' => 'gra', 'Gorai.010G180700' => 'gra', 'GSVIVG01012716001' => 'vvi', 'GSVIVG01025118001' => 'vvi', 'GSVIVG01030439001' => 'vvi', 'GSVIVG01031397001' => 'vvi', 'HanXRQChr01g0004201' => 'han', 'HanXRQChr02g0054941' => 'han', 'HanXRQChr05g0141811' => 'han', 'HanXRQChr07g0197751' => 'han', 'HanXRQChr11g0346691' => 'han', 'HanXRQChr13g0396971' => 'han', 'HanXRQChr14g0432951' => 'han', 'HanXRQChr14g0452001' => 'han', 'HanXRQChr15g0496681' => 'han', 'HanXRQChr17g0557491' => 'han', 'HanXRQChr17g0557501' => 'han', 'Haze_06809' => 'cav', 'Haze_12852' => 'cav', 'Haze_15850' => 'cav', 'Haze_23446' => 'cav', 'Haze_23942' => 'cav', 'Haze_23943' => 'cav', 'Hma1.2p1_0091F.1_g046450' => 'hma', 'Hma1.2p1_0128F.1_g059910' => 'hma', 'Hma1.2p1_0249F.1_g102260' => 'hma', 'Hma1.2p1_0453F.1_g156190' => 'hma', 'Hma1.2p1_0695F.1_g204380' => 'hma', 'Hma1.2p1_0749F.1_g212650' => 'hma', 'Hma1.2p1_2156F.1_g315420' => 'hma', 'Hma1.2p1_2686F.1_g326940' => 'hma', 'HPP92_006428' => 'vpl', 'HPP92_012069' => 'vpl', 'HPP92_014129' => 'vpl', 'HPP92_014133' => 'vpl', 'HPP92_017315' => 'vpl', 'HPP92_026445' => 'vpl', 'HPP92_026446' => 'vpl', 'Hund00774' => 'sun', 'Hund07682' => 'sun', 'Hund21413' => 'sun', 'Hund23462' => 'sun', 'Hund23463' => 'sun', 'Lalb_Chr03g0027911' => 'lal', 'Lalb_Chr13g0304271' => 'lal', 'Lalb_Chr19g0137471' => 'lal', 'Lalb_Chr22g0350651' => 'lal', 'Lalb_Chr24g0395151' => 'lal', 'Lj1A1231T40' => 'lonja', 'Lj1A221T48' => 'lonja', 'Lj1C924T12' => 'lonja', 'Lj2C993G6' => 'lonja', 'Lj3g0005790' => 'lja', 'Lj3g0015432' => 'lja', 'Lj3g0017722' => 'lja', 'Lj3g0018497' => 'lja', 'Lj4g0025071' => 'lja', 'Lsat_1_v5_gn_1_129680' => 'lsa', 'Lsat_1_v5_gn_2_25321' => 'lsa', 'Lsat_1_v5_gn_2_95461' => 'lsa', 'Lsat_1_v5_gn_4_159620' => 'lsa', 'Lsat_1_v5_gn_6_41301' => 'lsa', 'Lsat_1_v5_gn_6_74660' => 'lsa', 'Lsat_1_v5_gn_7_11520' => 'lsa', 'Lsat_1_v5_gn_9_67680' => 'lsa', 'Manes.04G008300' => 'mes', 'Manes.04G008400' => 'mes', 'Manes.04G026500' => 'mes', 'Manes.10G135300' => 'mes', 'Manes.11G157300' => 'mes', 'Manes.12G074000' => 'mes', 'Manes.16G006200' => 'mes', 'Manes.17G026400' => 'mes', 'Mapoly0024s0086' => 'mpo', 'Mapoly0024s0087' => 'mpo', 'Mapoly0071s0057' => 'mpo', 'Mapoly0204s0012' => 'mpo', 'MBI04_g37681_MAGBIO' => 'mbi', 'MBI05_g17779_MAGBIO' => 'mbi', 'MBI12_g31184_MAGBIO' => 'mbi', 'MBI17_g11083_MAGBIO' => 'mbi', 'MBI18_g03883_MAGBIO' => 'mbi', 'MBI18_g28940_MAGBIO' => 'mbi', 'MCO01G690' => 'mco', 'MD03G1109900' => 'mdo', 'MD03G1134800' => 'mdo', 'MD05G1348000' => 'mdo', 'MD10G1322400' => 'mdo', 'MD11G1123300' => 'mdo', 'MD11G1157600' => 'mdo', 'Medtr2g084875' => 'mtr', 'Medtr2g088130' => 'mtr', 'Medtr4g055310' => 'mtr', 'Medtr4g061070' => 'mtr', 'Medtr4g132250' => 'mtr', 'MELO3C004795.2' => 'cme', 'MELO3C004797.2' => 'cme', 'MELO3C007396.2' => 'cme', 'MELO3C019277.2' => 'cme', 'MELO3C021449.2' => 'cme', 'MELO3C025736.2' => 'cme', 'Migut.D02175' => 'egut', 'Migut.H01573' => 'egut', 'Migut.M01327' => 'egut', 'Migut.N02513' => 'egut', 'MSTRG.14638' => 'ama', 'MSTRG.18632' => 'ama', 'MSTRG.7203' => 'ama', 'Nitab4.5_0000533g0140' => 'nta', 'Nitab4.5_0000888g0150' => 'nta', 'Nitab4.5_0001453g0040' => 'nta', 'Nitab4.5_0002827g0090' => 'nta', 'Nitab4.5_0003082g0040' => 'nta', 'Nitab4.5_0007799g0040' => 'nta', 'Nitab4.5_0008983g0010' => 'nta', 'Nitab4.5_0009017g0020' => 'nta', 'Nn1g02132' => 'nnu', 'Nn1g03492' => 'nnu', 'Nn1g03493' => 'nnu', 'Nn1g03494' => 'nnu', 'Nn1g07164' => 'nnu', 'Nn1g07291' => 'nnu', 'Nn2g10655' => 'nnu', 'Nn2g11652' => 'nnu', 'Nn2g14008' => 'nnu', 'Nn3g17476' => 'nnu', 'Nn3g17477' => 'nnu', 'Nn4g22370' => 'nnu', 'Nn4g25255' => 'nnu', 'Nn5g27755' => 'nnu', 'Nn6g34260' => 'nnu', 'Nn6g35041' => 'nnu', 'Oeu005924.1' => 'oeu', 'Oeu008383.1' => 'oeu', 'Oeu014928.1' => 'oeu', 'Oeu019889.1' => 'oeu', 'Oeu022271.1' => 'oeu', 'Oeu025271.1' => 'oeu', 'Oeu036302.1' => 'oeu', 'Oeu044100.1' => 'oeu', 'Os01g0528300' => 'osa', 'Os03g0286200' => 'osa', 'Os04g0406600' => 'osa', 'Os07g0512000' => 'osa', 'Os07g0694600' => 'osa', 'Os08g0411000' => 'osa', 'Os09g0565700' => 'osa', 'Os09g0566050' => 'osa', 'Os10g0523700' => 'osa', 'Peaxi162Scf00002g00514' => 'pax', 'Peaxi162Scf00047g01817' => 'pax', 'Peaxi162Scf00114g00001' => 'pax', 'Peaxi162Scf00147g00613' => 'pax', 'Peaxi162Scf00389g00425' => 'pax', 'PGR042G1139' => 'pgr', 'PGR042G3273' => 'pgr', 'PGR102G2180' => 'pgr', 'PGR119G0234' => 'pgr', 'PGR119G0668' => 'pgr', 'PGSC0003DMG400007122' => 'stu', 'PGSC0003DMG400016478' => 'stu', 'PGSC0003DMG400025374' => 'stu', 'PGSC0003DMG400026536' => 'stu', 'Phvul.003G079600' => 'pvu', 'Phvul.005G115600' => 'pvu', 'Phvul.005G127100' => 'pvu', 'Phvul.006G149500' => 'pvu', 'Phvul.006G149600' => 'pvu', 'Phvul.011G071800' => 'pvu', 'Phvul.011G090400' => 'pvu', 'Potri.004G013400' => 'ptr', 'Potri.004G188100' => 'ptr', 'Potri.008G195500' => 'ptr', 'Potri.009G148800' => 'ptr', 'Potri.011G004700' => 'ptr', 'Pp3c17_22810' => 'ppa', 'Pp3c18_4480' => 'ppa', 'Pp3c19_13030' => 'ppa', 'Pp3c1_33620' => 'ppa', 'Pp3c2_9380' => 'ppa', 'PRCOL_00001023' => 'pco', 'Prupe.3G216300' => 'ppe', 'Prupe.4G019500' => 'ppe', 'Prupe.6G092500' => 'ppe', 'Prupe.6G119200' => 'ppe', 'Psat0s1945g0080' => 'psa', 'Psat0s4167g0040' => 'psa', 'Psat1g185800' => 'psa', 'Psat4g006440' => 'psa', 'Psat4g006480' => 'psa', 'Psat4g168120' => 'psa', 'Psat5g255680' => 'psa', 'Psat5g261760' => 'psa', 'Psat7g222120' => 'psa', 'PSO063G7252' => 'pso', 'PSO170G4778' => 'pso', 'PSO210G2249' => 'pso', 'PSO339G2411' => 'pso', 'PSO339G2457' => 'pso', 'PSO339G2854' => 'pso', 'PSO339G4288' => 'pso', 'PSO339G4615' => 'pso', 'PSO384G2796' => 'pso', 'PSO384G2940' => 'pso', 'PSO384G4227' => 'pso', 'PSO478G1425' => 'pso', 'PSO541G3863' => 'pso', 'PSO675G0507' => 'pso', 'PSO782G0338' => 'pso', 'PSO832G0644' => 'pso', 'QL01p013664' => 'qlo', 'QL01p036598' => 'qlo', 'QL05p072984' => 'qlo', 'QL08p005768' => 'qlo', 'QL08p032743' => 'qlo', 'QL93p0073_0439' => 'qlo', 'QL93p0073_0444' => 'qlo', 'RcHm_v2.0_Chr5g0002851' => 'rch', 'RcHm_v2.0_Chr5g0055201' => 'rch', 'RcHm_v2.0_Chr5g0061191' => 'rch', 'RcHm_v2.0_Chr7g0203231' => 'rch', 'Rhsim01G0208100' => 'rsi', 'Rhsim01G0208200' => 'rsi', 'Rhsim02G0106500' => 'rsi', 'Rhsim03G0107900' => 'rsi', 'Rhsim06G0163400' => 'rsi', 'Rhsim13G0105200' => 'rsi', 'Sabra04G0006300' => 'sbr', 'Sabra04G0127000' => 'sbr', 'Sabra08G0148700' => 'sbr', 'Sabra09G0117400' => 'sbr', 'SalBow1G3326' => 'sbo', 'SalBow3G3228' => 'sbo', 'SalBow6G1634' => 'sbo', 'SalBow6G3603' => 'sbo', 'SalBow6G5266' => 'sbo', 'SalBow7G2265' => 'sbo', 'SalBow8G0850' => 'sbo', 'SalBow8G2592' => 'sbo', 'Sc05g0009240' => 'sci', 'Sc12g0002300' => 'sci', 'Sc21g0000100' => 'sci', 'Sc21g0004720' => 'sci', 'Sed0002949' => 'sed', 'Sed0004114' => 'sed', 'Sed0004306' => 'sed', 'Sed0006172' => 'sed', 'Sed0008413' => 'sed', 'Sed0013809' => 'sed', 'Sed0019556' => 'sed', 'SEGI_03570' => 'sgi', 'SEGI_07859' => 'sgi', 'SEGI_15042' => 'sgi', 'SEGI_16263' => 'sgi', 'SEGI_16552' => 'sgi', 'SEGI_24331' => 'sgi', 'SEGI_27316' => 'sgi', 'SEGI_29521' => 'sgi', 'SEGI_41342' => 'sgi', 'SGA_v2.0_scaffold27G11617' => 'sas', 'SGA_v2.0_scaffold316G48428' => 'sas', 'SGA_v2.0_scaffold49G18261' => 'sas', 'SGA_v2.0_scaffold7G03831' => 'sas', 'SGA_v2.0_scaffold93G28359' => 'sas', 'SHI02210' => 'shi', 'SHI06028' => 'shi', 'SHI06321' => 'shi', 'SMO111G0012' => 'smo', 'SMO228G0080' => 'smo', 'SMO356G0756' => 'smo', 'Solyc02g080620.3' => 'sly', 'Solyc06g074530.1' => 'sly', 'Solyc11g066890.1' => 'sly', 'Solyc11g072520.3' => 'sly', 'Sopen02g025330' => 'spe', 'Sopen06g031000' => 'spe', 'Sopen09g008240' => 'spe', 'Sopen09g025210' => 'spe', 'Sopen11g026600' => 'spe', 'Sopen11g030170' => 'spe', 'Sp1g10420' => 'spa', 'Sp3g06570' => 'spa', 'Sp4g10660' => 'spa', 'Sp5g16460' => 'spa', 'Sp6g22710' => 'spa', 'TAR365G0112' => 'tar', 'TAR369G0717' => 'tar', 'TAR374G0976' => 'tar', 'TAR623G1128' => 'tar', 'TAR626G1937' => 'tar', 'TAR627G0123' => 'tar', 'TAR628G0305' => 'tar', 'TAR636G1176' => 'tar', 'TAR636G2442' => 'tar', 'THA.LOC104800556' => 'tha', 'THA.LOC104809501' => 'tha', 'THA.LOC104815126' => 'tha', 'THA.LOC104815732' => 'tha', 'THA.LOC104823528' => 'tha', 'Thecc.02G365600' => 'tca', 'Thecc.06G222300' => 'tca', 'Thecc.09G261800' => 'tca', 'Thecc.09G291400' => 'tca', 'Thhalv10003028m.g' => 'esa', 'Thhalv10007886m.g' => 'esa', 'Thhalv10016085m.g' => 'esa', 'Thhalv10016681m.g' => 'esa', 'Thhalv10020951m.g' => 'esa', 'TPR.G15598' => 'tpr', 'TPR.G29305' => 'tpr', 'TPR.G32395' => 'tpr', 'TPR.G36998' => 'tpr', 'TPR.G4227' => 'tpr', 'TWI18G1433' => 'twi', 'TWI31G0755' => 'twi', 'TWI38G0912' => 'twi', 'TWI75G1097' => 'twi', 'TWI75G1619' => 'twi', 'TWI79G1336' => 'twi', 'unitig_0.g943' => 'ugi', 'unitig_0.g944' => 'ugi', 'unitig_22.g6646' => 'ugi', 'unitig_37.g12681' => 'ugi', 'unitig_8.g3290' => 'ugi', 'vmacro03278' => 'vma', 'vmacro12197' => 'vma', 'vmacro14478' => 'vma', 'vmacro15787' => 'vma', 'vmacro15789' => 'vma', 'vmacro15790' => 'vma', 'vmacro15806' => 'vma', 'vmacro22907' => 'vma', 'vmacro22908' => 'vma', 'vmacro22909' => 'vma', 'vmacro23108' => 'vma', 'VMungo0540G0540' => 'vmu', 'VMungo0540G2468' => 'vmu', 'VMungo1080G0390' => 'vmu', 'VMungo1080G1165' => 'vmu', 'VMungo1127G0170' => 'vmu', 'VMungo1127G2099' => 'vmu', 'VMungo1215G3013' => 'vmu', 'Zm00001eb013110' => 'zma', 'Zm00001eb084260' => 'zma', 'Zm00001eb096110' => 'zma', 'Zm00001eb217510' => 'zma', 'Zm00001eb322550' => 'zma', 'Zm00001eb390770' => 'zma', 'Zm00001eb397170' => 'zma', 'Zm00001eb404610' => 'zma', 'Zm00001eb421790' => 'zma' ) $gf_id = 'HOM05D000911' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000911' ) $data_identifier = 'HOM05D000911' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 16, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 5, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 6, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 8, 'nnu' => (int) 16, 'oeu' => (int) 8, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 5, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 16, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421790' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000911', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27780' => 'bna', 'A03p35380' => 'bna', 'A04p21160' => 'bna', 'A05p40570' => 'bna', 'A06p26900' => 'bna', 'A08p33230' => 'bna', 'A09p65960' => 'bna', 'A10p18290' => 'bna', 'Aa31LG1G12990' => 'aar', 'Aa31LG1G2980' => 'aar', 'Aa31LG4G14320' => 'aar', 'Aa31LG7G11800' => 'aar', 'Aa31sc36G50' => 'aar', 'Aa31sc36G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3721' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5459' => 'aag', 'Actinidia03028' => 'ach', 'Actinidia03753' => 'ach', 'Actinidia04187' => 'ach', 'Actinidia05509' => 'ach', 'Actinidia24180' => 'ach', 'Actinidia26906' => 'ach', 'Actinidia37097' => 'ach', 'Actinidia38249' => 'ach', 'Ah.01g003470' => 'amhyb', 'Ah.01g004580' => 'amhyb', 'Ah.01g014850' => 'amhyb', 'Ah.01g016830' => 'amhyb', 'Ah.14g088000' => 'amhyb', 'AL1G22980' => 'aly', 'AL3G18990' => 'aly', 'AL4G22440' => 'aly', 'AL4G33180' => 'aly', 'AL5G22920' => 'aly', 'AL6G33660' => 'aly', 'AL8G20720' => 'aly', 'Aqoxy1G00935' => 'aox', 'Aqoxy1G02094' => 'aox', 'Aqoxy2G01239' => 'aox', 'Aqoxy4G01870' => 'aox', 'Aqoxy7G00450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.36ZVTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71EM27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5D6C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH3WRE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3NCM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RIM768' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YB5YRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z36GDV' => 'arhy', 'AT1G08250' => 'ath', 'AT1G11790' => 'ath', 'AT2G27820' => 'ath', 'AT3G07630' => 'ath', 'AT3G44720' => 'ath', 'AT5G22630' => 'ath', 'ATR0693G304' => 'atr', 'ATR0794G109' => 'atr', 'ATR0820G120' => 'atr', 'ATR1159G064' => 'atr', 'Atru.chr10.2239' => 'acertr', 'Atru.chr3.3371' => 'acertr', 'Atru.chr6.3202' => 'acertr', 'AUR62006499' => 'cqu', 'AUR62012718' => 'cqu', 'AUR62021938' => 'cqu', 'AUR62023932' => 'cqu', 'AUR62025034' => 'cqu', 'AUR62025035' => 'cqu', 'AUR62038307' => 'cqu', 'AUR62043466' => 'cqu', 'BcaB02g10748' => 'bca', 'BcaB03g13231' => 'bca', 'BcaB03g14689' => 'bca', 'BcaB05g22716' => 'bca', 'BcaB06g28172' => 'bca', 'BcaB08g36413' => 'bca', 'BcaC01g02186' => 'bca', 'BcaC01g04272' => 'bca', 'BcaC02g08080' => 'bca', 'BcaC02g08227' => 'bca', 'BcaC03g13901' => 'bca', 'BcaC04g19593' => 'bca', 'BcaC04g20874' => 'bca', 'BcaC05g29557' => 'bca', 'BcaC06g35505' => 'bca', 'BcaC07g41954' => 'bca', 'BcaC07g41955' => 'bca', 'BcaC07g41956' => 'bca', 'BcaC07g42519' => 'bca', 'BcaC07g42520' => 'bca', 'BcaC07g42523' => 'bca', 'BcaC07g42524' => 'bca', 'BcaC07g42525' => 'bca', 'BcaC08g47480' => 'bca', 'BcaC08g47481' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00530' => 'bna', 'BolC2t07178H' => 'bol', 'BolC3t16567H' => 'bol', 'BolC4t27234H' => 'bol', 'BolC5t29728H' => 'bol', 'BolC5t34622H' => 'bol', 'BolC6t40321H' => 'bol', 'BolC7t42028H' => 'bol', 'BolC8t49125H' => 'bol', 'BolC8t52538H' => 'bol', 'BolC8t52539H' => 'bol', 'BolC9t56681H' => 'bol', 'BolC9t58266H' => 'bol', 'BolSC21t60294H' => 'bol', 'BraA02t05670Z' => 'bra', 'BraA03t12716Z' => 'bra', 'BraA04t17685Z' => 'bra', 'BraA05t22788Z' => 'bra', 'BraA06t24032Z' => 'bra', 'BraA06t25625Z' => 'bra', 'BraA07t27930Z' => 'bra', 'BraA08t35242Z' => 'bra', 'BraA09t38609Z' => 'bra', 'BraA10t43905Z' => 'bra', 'C02p11060' => 'bna', 'C03p42990' => 'bna', 'C03p67310' => 'bna', 'C04p56990' => 'bna', 'C04p58660' => 'bna', 'C05p09890' => 'bna', 'C05p59680' => 'bna', 'C06p19830' => 'bna', 'C06p53040' => 'bna', 'C07p15230' => 'bna', 'C08p50070' => 'bna', 'C08p50090' => 'bna', 'C09p38330' => 'bna', 'C09p53940' => 'bna', 'CAN.G1014.1' => 'can', 'CAN.G644.30' => 'can', 'CAN.G84.47' => 'can', 'CAN.G919.8' => 'can', 'CANSAT54G0113' => 'cansat', 'CANSAT54G1286' => 'cansat', 'CANSAT64G1020' => 'cansat', 'CARHR008080' => 'chi', 'CARHR008090' => 'chi', 'CARHR012130' => 'chi', 'CARHR038390' => 'chi', 'CARHR082330' => 'chi', 'CARHR120520' => 'chi', 'CARHR151470' => 'chi', 'CARHR190950' => 'chi', 'Carub.0001s0760' => 'cru', 'Carub.0001s1146' => 'cru', 'Carub.0003s0721' => 'cru', 'Carub.0004s0858' => 'cru', 'Carub.0005s1040' => 'cru', 'Carub.0006s2035' => 'cru', 'Carub.0015s0005' => 'cru', 'Ca_01607_v3' => 'car', 'Ca_01677_v3' => 'car', 'Ca_06087_v3' => 'car', 'Ca_19238_v3' => 'car', 'Ca_19373_v3' => 'car', 'Ca_21079_v3' => 'car', 'CBR_g54016' => 'cbr', 'CBR_g54018' => 'cbr', 'CBR_g54020' => 'cbr', 'Cc01_g09780' => 'ccan', 'Cc01_g11680' => 'ccan', 'Cc02_g15610' => 'ccan', 'Cc05_g04350' => 'ccan', 'Cc09_g01580' => 'ccan', 'CDE01G0795' => 'cde', 'CDE02G2024' => 'cde', 'CDE02G2260' => 'cde', 'CDE02G4561' => 'cde', 'CDE05G2733' => 'cde', 'CDE05G3422' => 'cde', 'CDE06G2003' => 'cde', 'CDE08G0576' => 'cde', 'CDE09G0048' => 'cde', 'CDE11G0805' => 'cde', 'Cfa003644' => 'cfa', 'Cfa006290' => 'cfa', 'Cfa010080' => 'cfa', 'Cfa011376' => 'cfa', 'Cfa011576' => 'cfa', 'Cfa011577' => 'cfa', 'Cfa014389' => 'cfa', 'Ciclev10006044m.g' => 'ccl', 'Ciclev10006954m.g' => 'ccl', 'Ciclev10015131m.g' => 'ccl', 'Ciclev10015580m.g' => 'ccl', 'Ciclev10028359m.g' => 'ccl', 'Ciclev10028573m.g' => 'ccl', 'CiPaw.03G159300' => 'cil', 'CiPaw.04G115100' => 'cil', 'CiPaw.09G092800' => 'cil', 'CiPaw.10G071800' => 'cil', 'CiPaw.13G105800' => 'cil', 'CiPaw.13G141000' => 'cil', 'CiPaw.14G103400' => 'cil', 'ClCG01G012700' => 'cla', 'ClCG01G012720' => 'cla', 'ClCG01G021920' => 'cla', 'ClCG02G008870' => 'cla', 'ClCG02G020840' => 'cla', 'ClCG02G021930' => 'cla', 'COL.COLO4_19302' => 'col', 'COL.COLO4_25262' => 'col', 'COL.COLO4_31788' => 'col', 'Cpa.g.c34684' => 'cpa', 'Cpa.g.c36520.1' => 'cpa', 'Cpa.g.c45626' => 'cpa', 'Cpa.g.sc121.17' => 'cpa', 'Cpa.g.sc13.22' => 'cpa', 'Cpa.g.sc87.88' => 'cpa', 'Cre06.g261800' => 'cre', 'CsaV3_1G014500' => 'csa', 'CsaV3_1G014510' => 'csa', 'CsaV3_2G034880' => 'csa', 'CsaV3_6G014760' => 'csa', 'CsaV3_6G021500' => 'csa', 'CsaV3_6G048980' => 'csa', 'CSS0002511' => 'camsi', 'CSS0007556' => 'camsi', 'CSS0008532' => 'camsi', 'CSS0009709' => 'camsi', 'CSS0010486' => 'camsi', 'CSS0016768' => 'camsi', 'CSS0023512' => 'camsi', 'CSS0025341' => 'camsi', 'CSS0027999' => 'camsi', 'CSS0028944' => 'camsi', 'CSS0032292' => 'camsi', 'CSS0032464' => 'camsi', 'CSS0037153' => 'camsi', 'CSS0039256' => 'camsi', 'CSS0048392' => 'camsi', 'CSS0050458' => 'camsi', 'DCAR_004224' => 'dca', 'DCAR_006147' => 'dca', 'DCAR_006465' => 'dca', 'DCAR_008159' => 'dca', 'DCAR_012164' => 'dca', 'DCAR_019764' => 'dca', 'Dinv05418' => 'din', 'Dinv10839' => 'din', 'Dinv12521' => 'din', 'Dinv13900' => 'din', 'Dinv29426' => 'din', 'Duzib150G0263' => 'dzi', 'Duzib168G1178' => 'dzi', 'Duzib168G1924' => 'dzi', 'Duzib170G0299' => 'dzi', 'Duzib170G0813' => 'dzi', 'Duzib235G1128' => 'dzi', 'Duzib248G1060' => 'dzi', 'ECA232G1910' => 'eca', 'ECA233G4621' => 'eca', 'ECA238G1216' => 'eca', 'ECA238G1784' => 'eca', 'ECA248G1242' => 'eca', 'EL10Ac8g20071' => 'bvu', 'EL10Ac9g21086' => 'bvu', 'EL10Ac9g22407' => 'bvu', 'EL10Ac9g22412' => 'bvu', 'Eucgr.A01119' => 'egr', 'Eucgr.E04043' => 'egr', 'Eucgr.J00428' => 'egr', 'Eucgr.J00958' => 'egr', 'FAN11G3091' => 'fan', 'FAN11G3651' => 'fan', 'FAN16G2566' => 'fan', 'FAN21G3155' => 'fan', 'FAN21G3400' => 'fan', 'FAN21G3543' => 'fan', 'FAN25G0234' => 'fan', 'FAN25G1422' => 'fan', 'FAN25G3392' => 'fan', 'FvH4_3g01940' => 'fve', 'FvH4_3g29870' => 'fve', 'FvH4_3g33680' => 'fve', 'Glyma.09G004200' => 'gma', 'Glyma.11G151288' => 'gma', 'Glyma.11G189100' => 'gma', 'Glyma.12G072500' => 'gma', 'Glyma.12G085500' => 'gma', 'Glyma.12G181800' => 'gma', 'Glyma.12G193000' => 'gma', 'Glyma.13G309300' => 'gma', 'Glyma.13G319000' => 'gma', 'Glyma.17G012600' => 'gma', 'Gohir.A06G148600' => 'ghi', 'Gohir.A07G115800' => 'ghi', 'Gohir.A08G003600' => 'ghi', 'Gohir.A09G093300' => 'ghi', 'Gohir.A09G105400' => 'ghi', 'Gohir.A09G105500' => 'ghi', 'Gohir.D06G154600' => 'ghi', 'Gohir.D07G120200' => 'ghi', 'Gohir.D08G013900' => 'ghi', 'Gohir.D09G093100' => 'ghi', 'Gohir.D09G102200' => 'ghi', 'Gohir.D09G102300' => 'ghi', 'Gorai.001G129400' => 'gra', 'Gorai.004G008200' => 'gra', 'Gorai.006G109800' => 'gra', 'Gorai.006G119500' => 'gra', 'Gorai.006G121300' => 'gra', 'Gorai.010G180700' => 'gra', 'GSVIVG01012716001' => 'vvi', 'GSVIVG01025118001' => 'vvi', 'GSVIVG01030439001' => 'vvi', 'GSVIVG01031397001' => 'vvi', 'HanXRQChr01g0004201' => 'han', 'HanXRQChr02g0054941' => 'han', 'HanXRQChr05g0141811' => 'han', 'HanXRQChr07g0197751' => 'han', 'HanXRQChr11g0346691' => 'han', 'HanXRQChr13g0396971' => 'han', 'HanXRQChr14g0432951' => 'han', 'HanXRQChr14g0452001' => 'han', 'HanXRQChr15g0496681' => 'han', 'HanXRQChr17g0557491' => 'han', 'HanXRQChr17g0557501' => 'han', 'Haze_06809' => 'cav', 'Haze_12852' => 'cav', 'Haze_15850' => 'cav', 'Haze_23446' => 'cav', 'Haze_23942' => 'cav', 'Haze_23943' => 'cav', 'Hma1.2p1_0091F.1_g046450' => 'hma', 'Hma1.2p1_0128F.1_g059910' => 'hma', 'Hma1.2p1_0249F.1_g102260' => 'hma', 'Hma1.2p1_0453F.1_g156190' => 'hma', 'Hma1.2p1_0695F.1_g204380' => 'hma', 'Hma1.2p1_0749F.1_g212650' => 'hma', 'Hma1.2p1_2156F.1_g315420' => 'hma', 'Hma1.2p1_2686F.1_g326940' => 'hma', 'HPP92_006428' => 'vpl', 'HPP92_012069' => 'vpl', 'HPP92_014129' => 'vpl', 'HPP92_014133' => 'vpl', 'HPP92_017315' => 'vpl', 'HPP92_026445' => 'vpl', 'HPP92_026446' => 'vpl', 'Hund00774' => 'sun', 'Hund07682' => 'sun', 'Hund21413' => 'sun', 'Hund23462' => 'sun', 'Hund23463' => 'sun', 'Lalb_Chr03g0027911' => 'lal', 'Lalb_Chr13g0304271' => 'lal', 'Lalb_Chr19g0137471' => 'lal', 'Lalb_Chr22g0350651' => 'lal', 'Lalb_Chr24g0395151' => 'lal', 'Lj1A1231T40' => 'lonja', 'Lj1A221T48' => 'lonja', 'Lj1C924T12' => 'lonja', 'Lj2C993G6' => 'lonja', 'Lj3g0005790' => 'lja', 'Lj3g0015432' => 'lja', 'Lj3g0017722' => 'lja', 'Lj3g0018497' => 'lja', 'Lj4g0025071' => 'lja', 'Lsat_1_v5_gn_1_129680' => 'lsa', 'Lsat_1_v5_gn_2_25321' => 'lsa', 'Lsat_1_v5_gn_2_95461' => 'lsa', 'Lsat_1_v5_gn_4_159620' => 'lsa', 'Lsat_1_v5_gn_6_41301' => 'lsa', 'Lsat_1_v5_gn_6_74660' => 'lsa', 'Lsat_1_v5_gn_7_11520' => 'lsa', 'Lsat_1_v5_gn_9_67680' => 'lsa', 'Manes.04G008300' => 'mes', 'Manes.04G008400' => 'mes', 'Manes.04G026500' => 'mes', 'Manes.10G135300' => 'mes', 'Manes.11G157300' => 'mes', 'Manes.12G074000' => 'mes', 'Manes.16G006200' => 'mes', 'Manes.17G026400' => 'mes', 'Mapoly0024s0086' => 'mpo', 'Mapoly0024s0087' => 'mpo', 'Mapoly0071s0057' => 'mpo', 'Mapoly0204s0012' => 'mpo', 'MBI04_g37681_MAGBIO' => 'mbi', 'MBI05_g17779_MAGBIO' => 'mbi', 'MBI12_g31184_MAGBIO' => 'mbi', 'MBI17_g11083_MAGBIO' => 'mbi', 'MBI18_g03883_MAGBIO' => 'mbi', 'MBI18_g28940_MAGBIO' => 'mbi', 'MCO01G690' => 'mco', 'MD03G1109900' => 'mdo', 'MD03G1134800' => 'mdo', 'MD05G1348000' => 'mdo', 'MD10G1322400' => 'mdo', 'MD11G1123300' => 'mdo', 'MD11G1157600' => 'mdo', 'Medtr2g084875' => 'mtr', 'Medtr2g088130' => 'mtr', 'Medtr4g055310' => 'mtr', 'Medtr4g061070' => 'mtr', 'Medtr4g132250' => 'mtr', 'MELO3C004795.2' => 'cme', 'MELO3C004797.2' => 'cme', 'MELO3C007396.2' => 'cme', 'MELO3C019277.2' => 'cme', 'MELO3C021449.2' => 'cme', 'MELO3C025736.2' => 'cme', 'Migut.D02175' => 'egut', 'Migut.H01573' => 'egut', 'Migut.M01327' => 'egut', 'Migut.N02513' => 'egut', 'MSTRG.14638' => 'ama', 'MSTRG.18632' => 'ama', 'MSTRG.7203' => 'ama', 'Nitab4.5_0000533g0140' => 'nta', 'Nitab4.5_0000888g0150' => 'nta', 'Nitab4.5_0001453g0040' => 'nta', 'Nitab4.5_0002827g0090' => 'nta', 'Nitab4.5_0003082g0040' => 'nta', 'Nitab4.5_0007799g0040' => 'nta', 'Nitab4.5_0008983g0010' => 'nta', 'Nitab4.5_0009017g0020' => 'nta', 'Nn1g02132' => 'nnu', 'Nn1g03492' => 'nnu', 'Nn1g03493' => 'nnu', 'Nn1g03494' => 'nnu', 'Nn1g07164' => 'nnu', 'Nn1g07291' => 'nnu', 'Nn2g10655' => 'nnu', 'Nn2g11652' => 'nnu', 'Nn2g14008' => 'nnu', 'Nn3g17476' => 'nnu', 'Nn3g17477' => 'nnu', 'Nn4g22370' => 'nnu', 'Nn4g25255' => 'nnu', 'Nn5g27755' => 'nnu', 'Nn6g34260' => 'nnu', 'Nn6g35041' => 'nnu', 'Oeu005924.1' => 'oeu', 'Oeu008383.1' => 'oeu', 'Oeu014928.1' => 'oeu', 'Oeu019889.1' => 'oeu', 'Oeu022271.1' => 'oeu', 'Oeu025271.1' => 'oeu', 'Oeu036302.1' => 'oeu', 'Oeu044100.1' => 'oeu', 'Os01g0528300' => 'osa', 'Os03g0286200' => 'osa', 'Os04g0406600' => 'osa', 'Os07g0512000' => 'osa', 'Os07g0694600' => 'osa', 'Os08g0411000' => 'osa', 'Os09g0565700' => 'osa', 'Os09g0566050' => 'osa', 'Os10g0523700' => 'osa', 'Peaxi162Scf00002g00514' => 'pax', 'Peaxi162Scf00047g01817' => 'pax', 'Peaxi162Scf00114g00001' => 'pax', 'Peaxi162Scf00147g00613' => 'pax', 'Peaxi162Scf00389g00425' => 'pax', 'PGR042G1139' => 'pgr', 'PGR042G3273' => 'pgr', 'PGR102G2180' => 'pgr', 'PGR119G0234' => 'pgr', 'PGR119G0668' => 'pgr', 'PGSC0003DMG400007122' => 'stu', 'PGSC0003DMG400016478' => 'stu', 'PGSC0003DMG400025374' => 'stu', 'PGSC0003DMG400026536' => 'stu', 'Phvul.003G079600' => 'pvu', 'Phvul.005G115600' => 'pvu', 'Phvul.005G127100' => 'pvu', 'Phvul.006G149500' => 'pvu', 'Phvul.006G149600' => 'pvu', 'Phvul.011G071800' => 'pvu', 'Phvul.011G090400' => 'pvu', 'Potri.004G013400' => 'ptr', 'Potri.004G188100' => 'ptr', 'Potri.008G195500' => 'ptr', 'Potri.009G148800' => 'ptr', 'Potri.011G004700' => 'ptr', 'Pp3c17_22810' => 'ppa', 'Pp3c18_4480' => 'ppa', 'Pp3c19_13030' => 'ppa', 'Pp3c1_33620' => 'ppa', 'Pp3c2_9380' => 'ppa', 'PRCOL_00001023' => 'pco', 'Prupe.3G216300' => 'ppe', 'Prupe.4G019500' => 'ppe', 'Prupe.6G092500' => 'ppe', 'Prupe.6G119200' => 'ppe', 'Psat0s1945g0080' => 'psa', 'Psat0s4167g0040' => 'psa', 'Psat1g185800' => 'psa', 'Psat4g006440' => 'psa', 'Psat4g006480' => 'psa', 'Psat4g168120' => 'psa', 'Psat5g255680' => 'psa', 'Psat5g261760' => 'psa', 'Psat7g222120' => 'psa', 'PSO063G7252' => 'pso', 'PSO170G4778' => 'pso', 'PSO210G2249' => 'pso', 'PSO339G2411' => 'pso', 'PSO339G2457' => 'pso', 'PSO339G2854' => 'pso', 'PSO339G4288' => 'pso', 'PSO339G4615' => 'pso', 'PSO384G2796' => 'pso', 'PSO384G2940' => 'pso', 'PSO384G4227' => 'pso', 'PSO478G1425' => 'pso', 'PSO541G3863' => 'pso', 'PSO675G0507' => 'pso', 'PSO782G0338' => 'pso', 'PSO832G0644' => 'pso', 'QL01p013664' => 'qlo', 'QL01p036598' => 'qlo', 'QL05p072984' => 'qlo', 'QL08p005768' => 'qlo', 'QL08p032743' => 'qlo', 'QL93p0073_0439' => 'qlo', 'QL93p0073_0444' => 'qlo', 'RcHm_v2.0_Chr5g0002851' => 'rch', 'RcHm_v2.0_Chr5g0055201' => 'rch', 'RcHm_v2.0_Chr5g0061191' => 'rch', 'RcHm_v2.0_Chr7g0203231' => 'rch', 'Rhsim01G0208100' => 'rsi', 'Rhsim01G0208200' => 'rsi', 'Rhsim02G0106500' => 'rsi', 'Rhsim03G0107900' => 'rsi', 'Rhsim06G0163400' => 'rsi', 'Rhsim13G0105200' => 'rsi', 'Sabra04G0006300' => 'sbr', 'Sabra04G0127000' => 'sbr', 'Sabra08G0148700' => 'sbr', 'Sabra09G0117400' => 'sbr', 'SalBow1G3326' => 'sbo', 'SalBow3G3228' => 'sbo', 'SalBow6G1634' => 'sbo', 'SalBow6G3603' => 'sbo', 'SalBow6G5266' => 'sbo', 'SalBow7G2265' => 'sbo', 'SalBow8G0850' => 'sbo', 'SalBow8G2592' => 'sbo', 'Sc05g0009240' => 'sci', 'Sc12g0002300' => 'sci', 'Sc21g0000100' => 'sci', 'Sc21g0004720' => 'sci', 'Sed0002949' => 'sed', 'Sed0004114' => 'sed', 'Sed0004306' => 'sed', 'Sed0006172' => 'sed', 'Sed0008413' => 'sed', 'Sed0013809' => 'sed', 'Sed0019556' => 'sed', 'SEGI_03570' => 'sgi', 'SEGI_07859' => 'sgi', 'SEGI_15042' => 'sgi', 'SEGI_16263' => 'sgi', 'SEGI_16552' => 'sgi', 'SEGI_24331' => 'sgi', 'SEGI_27316' => 'sgi', 'SEGI_29521' => 'sgi', 'SEGI_41342' => 'sgi', 'SGA_v2.0_scaffold27G11617' => 'sas', 'SGA_v2.0_scaffold316G48428' => 'sas', 'SGA_v2.0_scaffold49G18261' => 'sas', 'SGA_v2.0_scaffold7G03831' => 'sas', 'SGA_v2.0_scaffold93G28359' => 'sas', 'SHI02210' => 'shi', 'SHI06028' => 'shi', 'SHI06321' => 'shi', 'SMO111G0012' => 'smo', 'SMO228G0080' => 'smo', 'SMO356G0756' => 'smo', 'Solyc02g080620.3' => 'sly', 'Solyc06g074530.1' => 'sly', 'Solyc11g066890.1' => 'sly', 'Solyc11g072520.3' => 'sly', 'Sopen02g025330' => 'spe', 'Sopen06g031000' => 'spe', 'Sopen09g008240' => 'spe', 'Sopen09g025210' => 'spe', 'Sopen11g026600' => 'spe', 'Sopen11g030170' => 'spe', 'Sp1g10420' => 'spa', 'Sp3g06570' => 'spa', 'Sp4g10660' => 'spa', 'Sp5g16460' => 'spa', 'Sp6g22710' => 'spa', 'TAR365G0112' => 'tar', 'TAR369G0717' => 'tar', 'TAR374G0976' => 'tar', 'TAR623G1128' => 'tar', 'TAR626G1937' => 'tar', 'TAR627G0123' => 'tar', 'TAR628G0305' => 'tar', 'TAR636G1176' => 'tar', 'TAR636G2442' => 'tar', 'THA.LOC104800556' => 'tha', 'THA.LOC104809501' => 'tha', 'THA.LOC104815126' => 'tha', 'THA.LOC104815732' => 'tha', 'THA.LOC104823528' => 'tha', 'Thecc.02G365600' => 'tca', 'Thecc.06G222300' => 'tca', 'Thecc.09G261800' => 'tca', 'Thecc.09G291400' => 'tca', 'Thhalv10003028m.g' => 'esa', 'Thhalv10007886m.g' => 'esa', 'Thhalv10016085m.g' => 'esa', 'Thhalv10016681m.g' => 'esa', 'Thhalv10020951m.g' => 'esa', 'TPR.G15598' => 'tpr', 'TPR.G29305' => 'tpr', 'TPR.G32395' => 'tpr', 'TPR.G36998' => 'tpr', 'TPR.G4227' => 'tpr', 'TWI18G1433' => 'twi', 'TWI31G0755' => 'twi', 'TWI38G0912' => 'twi', 'TWI75G1097' => 'twi', 'TWI75G1619' => 'twi', 'TWI79G1336' => 'twi', 'unitig_0.g943' => 'ugi', 'unitig_0.g944' => 'ugi', 'unitig_22.g6646' => 'ugi', 'unitig_37.g12681' => 'ugi', 'unitig_8.g3290' => 'ugi', 'vmacro03278' => 'vma', 'vmacro12197' => 'vma', 'vmacro14478' => 'vma', 'vmacro15787' => 'vma', 'vmacro15789' => 'vma', 'vmacro15790' => 'vma', 'vmacro15806' => 'vma', 'vmacro22907' => 'vma', 'vmacro22908' => 'vma', 'vmacro22909' => 'vma', 'vmacro23108' => 'vma', 'VMungo0540G0540' => 'vmu', 'VMungo0540G2468' => 'vmu', 'VMungo1080G0390' => 'vmu', 'VMungo1080G1165' => 'vmu', 'VMungo1127G0170' => 'vmu', 'VMungo1127G2099' => 'vmu', 'VMungo1215G3013' => 'vmu', 'Zm00001eb013110' => 'zma', 'Zm00001eb084260' => 'zma', 'Zm00001eb096110' => 'zma', 'Zm00001eb217510' => 'zma', 'Zm00001eb322550' => 'zma', 'Zm00001eb390770' => 'zma', 'Zm00001eb397170' => 'zma', 'Zm00001eb404610' => 'zma', 'Zm00001eb421790' => 'zma' ), 'gf_id' => 'HOM05D000911', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000911' ), 'data_identifier' => 'HOM05D000911', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000911', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27780' => 'bna', 'A03p35380' => 'bna', 'A04p21160' => 'bna', 'A05p40570' => 'bna', 'A06p26900' => 'bna', 'A08p33230' => 'bna', 'A09p65960' => 'bna', 'A10p18290' => 'bna', 'Aa31LG1G12990' => 'aar', 'Aa31LG1G2980' => 'aar', 'Aa31LG4G14320' => 'aar', 'Aa31LG7G11800' => 'aar', 'Aa31sc36G50' => 'aar', 'Aa31sc36G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3721' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5459' => 'aag', 'Actinidia03028' => 'ach', 'Actinidia03753' => 'ach', 'Actinidia04187' => 'ach', 'Actinidia05509' => 'ach', 'Actinidia24180' => 'ach', 'Actinidia26906' => 'ach', 'Actinidia37097' => 'ach', 'Actinidia38249' => 'ach', 'Ah.01g003470' => 'amhyb', 'Ah.01g004580' => 'amhyb', 'Ah.01g014850' => 'amhyb', 'Ah.01g016830' => 'amhyb', 'Ah.14g088000' => 'amhyb', 'AL1G22980' => 'aly', 'AL3G18990' => 'aly', 'AL4G22440' => 'aly', 'AL4G33180' => 'aly', 'AL5G22920' => 'aly', 'AL6G33660' => 'aly', 'AL8G20720' => 'aly', 'Aqoxy1G00935' => 'aox', 'Aqoxy1G02094' => 'aox', 'Aqoxy2G01239' => 'aox', 'Aqoxy4G01870' => 'aox', 'Aqoxy7G00450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.36ZVTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71EM27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5D6C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH3WRE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3NCM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RIM768' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YB5YRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z36GDV' => 'arhy', 'AT1G08250' => 'ath', 'AT1G11790' => 'ath', 'AT2G27820' => 'ath', 'AT3G07630' => 'ath', 'AT3G44720' => 'ath', 'AT5G22630' => 'ath', 'ATR0693G304' => 'atr', 'ATR0794G109' => 'atr', 'ATR0820G120' => 'atr', 'ATR1159G064' => 'atr', 'Atru.chr10.2239' => 'acertr', 'Atru.chr3.3371' => 'acertr', 'Atru.chr6.3202' => 'acertr', 'AUR62006499' => 'cqu', 'AUR62012718' => 'cqu', 'AUR62021938' => 'cqu', 'AUR62023932' => 'cqu', 'AUR62025034' => 'cqu', 'AUR62025035' => 'cqu', 'AUR62038307' => 'cqu', 'AUR62043466' => 'cqu', 'BcaB02g10748' => 'bca', 'BcaB03g13231' => 'bca', 'BcaB03g14689' => 'bca', 'BcaB05g22716' => 'bca', 'BcaB06g28172' => 'bca', 'BcaB08g36413' => 'bca', 'BcaC01g02186' => 'bca', 'BcaC01g04272' => 'bca', 'BcaC02g08080' => 'bca', 'BcaC02g08227' => 'bca', 'BcaC03g13901' => 'bca', 'BcaC04g19593' => 'bca', 'BcaC04g20874' => 'bca', 'BcaC05g29557' => 'bca', 'BcaC06g35505' => 'bca', 'BcaC07g41954' => 'bca', 'BcaC07g41955' => 'bca', 'BcaC07g41956' => 'bca', 'BcaC07g42519' => 'bca', 'BcaC07g42520' => 'bca', 'BcaC07g42523' => 'bca', 'BcaC07g42524' => 'bca', 'BcaC07g42525' => 'bca', 'BcaC08g47480' => 'bca', 'BcaC08g47481' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00530' => 'bna', 'BolC2t07178H' => 'bol', 'BolC3t16567H' => 'bol', 'BolC4t27234H' => 'bol', 'BolC5t29728H' => 'bol', 'BolC5t34622H' => 'bol', 'BolC6t40321H' => 'bol', 'BolC7t42028H' => 'bol', 'BolC8t49125H' => 'bol', 'BolC8t52538H' => 'bol', 'BolC8t52539H' => 'bol', 'BolC9t56681H' => 'bol', 'BolC9t58266H' => 'bol', 'BolSC21t60294H' => 'bol', 'BraA02t05670Z' => 'bra', 'BraA03t12716Z' => 'bra', 'BraA04t17685Z' => 'bra', 'BraA05t22788Z' => 'bra', 'BraA06t24032Z' => 'bra', 'BraA06t25625Z' => 'bra', 'BraA07t27930Z' => 'bra', 'BraA08t35242Z' => 'bra', 'BraA09t38609Z' => 'bra', 'BraA10t43905Z' => 'bra', 'C02p11060' => 'bna', 'C03p42990' => 'bna', 'C03p67310' => 'bna', 'C04p56990' => 'bna', 'C04p58660' => 'bna', 'C05p09890' => 'bna', 'C05p59680' => 'bna', 'C06p19830' => 'bna', 'C06p53040' => 'bna', 'C07p15230' => 'bna', 'C08p50070' => 'bna', 'C08p50090' => 'bna', 'C09p38330' => 'bna', 'C09p53940' => 'bna', 'CAN.G1014.1' => 'can', 'CAN.G644.30' => 'can', 'CAN.G84.47' => 'can', 'CAN.G919.8' => 'can', 'CANSAT54G0113' => 'cansat', 'CANSAT54G1286' => 'cansat', 'CANSAT64G1020' => 'cansat', 'CARHR008080' => 'chi', 'CARHR008090' => 'chi', 'CARHR012130' => 'chi', 'CARHR038390' => 'chi', 'CARHR082330' => 'chi', 'CARHR120520' => 'chi', 'CARHR151470' => 'chi', 'CARHR190950' => 'chi', 'Carub.0001s0760' => 'cru', 'Carub.0001s1146' => 'cru', 'Carub.0003s0721' => 'cru', 'Carub.0004s0858' => 'cru', 'Carub.0005s1040' => 'cru', 'Carub.0006s2035' => 'cru', 'Carub.0015s0005' => 'cru', 'Ca_01607_v3' => 'car', 'Ca_01677_v3' => 'car', 'Ca_06087_v3' => 'car', 'Ca_19238_v3' => 'car', 'Ca_19373_v3' => 'car', 'Ca_21079_v3' => 'car', 'CBR_g54016' => 'cbr', 'CBR_g54018' => 'cbr', 'CBR_g54020' => 'cbr', 'Cc01_g09780' => 'ccan', 'Cc01_g11680' => 'ccan', 'Cc02_g15610' => 'ccan', 'Cc05_g04350' => 'ccan', 'Cc09_g01580' => 'ccan', 'CDE01G0795' => 'cde', 'CDE02G2024' => 'cde', 'CDE02G2260' => 'cde', 'CDE02G4561' => 'cde', 'CDE05G2733' => 'cde', 'CDE05G3422' => 'cde', 'CDE06G2003' => 'cde', 'CDE08G0576' => 'cde', 'CDE09G0048' => 'cde', 'CDE11G0805' => 'cde', 'Cfa003644' => 'cfa', 'Cfa006290' => 'cfa', 'Cfa010080' => 'cfa', 'Cfa011376' => 'cfa', 'Cfa011576' => 'cfa', 'Cfa011577' => 'cfa', 'Cfa014389' => 'cfa', 'Ciclev10006044m.g' => 'ccl', 'Ciclev10006954m.g' => 'ccl', 'Ciclev10015131m.g' => 'ccl', 'Ciclev10015580m.g' => 'ccl', 'Ciclev10028359m.g' => 'ccl', 'Ciclev10028573m.g' => 'ccl', 'CiPaw.03G159300' => 'cil', 'CiPaw.04G115100' => 'cil', 'CiPaw.09G092800' => 'cil', 'CiPaw.10G071800' => 'cil', 'CiPaw.13G105800' => 'cil', 'CiPaw.13G141000' => 'cil', 'CiPaw.14G103400' => 'cil', 'ClCG01G012700' => 'cla', 'ClCG01G012720' => 'cla', 'ClCG01G021920' => 'cla', 'ClCG02G008870' => 'cla', 'ClCG02G020840' => 'cla', 'ClCG02G021930' => 'cla', 'COL.COLO4_19302' => 'col', 'COL.COLO4_25262' => 'col', 'COL.COLO4_31788' => 'col', 'Cpa.g.c34684' => 'cpa', 'Cpa.g.c36520.1' => 'cpa', 'Cpa.g.c45626' => 'cpa', 'Cpa.g.sc121.17' => 'cpa', 'Cpa.g.sc13.22' => 'cpa', 'Cpa.g.sc87.88' => 'cpa', 'Cre06.g261800' => 'cre', 'CsaV3_1G014500' => 'csa', 'CsaV3_1G014510' => 'csa', 'CsaV3_2G034880' => 'csa', 'CsaV3_6G014760' => 'csa', 'CsaV3_6G021500' => 'csa', 'CsaV3_6G048980' => 'csa', 'CSS0002511' => 'camsi', 'CSS0007556' => 'camsi', 'CSS0008532' => 'camsi', 'CSS0009709' => 'camsi', 'CSS0010486' => 'camsi', 'CSS0016768' => 'camsi', 'CSS0023512' => 'camsi', 'CSS0025341' => 'camsi', 'CSS0027999' => 'camsi', 'CSS0028944' => 'camsi', 'CSS0032292' => 'camsi', 'CSS0032464' => 'camsi', 'CSS0037153' => 'camsi', 'CSS0039256' => 'camsi', 'CSS0048392' => 'camsi', 'CSS0050458' => 'camsi', 'DCAR_004224' => 'dca', 'DCAR_006147' => 'dca', 'DCAR_006465' => 'dca', 'DCAR_008159' => 'dca', 'DCAR_012164' => 'dca', 'DCAR_019764' => 'dca', 'Dinv05418' => 'din', 'Dinv10839' => 'din', 'Dinv12521' => 'din', 'Dinv13900' => 'din', 'Dinv29426' => 'din', 'Duzib150G0263' => 'dzi', 'Duzib168G1178' => 'dzi', 'Duzib168G1924' => 'dzi', 'Duzib170G0299' => 'dzi', 'Duzib170G0813' => 'dzi', 'Duzib235G1128' => 'dzi', 'Duzib248G1060' => 'dzi', 'ECA232G1910' => 'eca', 'ECA233G4621' => 'eca', 'ECA238G1216' => 'eca', 'ECA238G1784' => 'eca', 'ECA248G1242' => 'eca', 'EL10Ac8g20071' => 'bvu', 'EL10Ac9g21086' => 'bvu', 'EL10Ac9g22407' => 'bvu', 'EL10Ac9g22412' => 'bvu', 'Eucgr.A01119' => 'egr', 'Eucgr.E04043' => 'egr', 'Eucgr.J00428' => 'egr', 'Eucgr.J00958' => 'egr', 'FAN11G3091' => 'fan', 'FAN11G3651' => 'fan', 'FAN16G2566' => 'fan', 'FAN21G3155' => 'fan', 'FAN21G3400' => 'fan', 'FAN21G3543' => 'fan', 'FAN25G0234' => 'fan', 'FAN25G1422' => 'fan', 'FAN25G3392' => 'fan', 'FvH4_3g01940' => 'fve', 'FvH4_3g29870' => 'fve', 'FvH4_3g33680' => 'fve', 'Glyma.09G004200' => 'gma', 'Glyma.11G151288' => 'gma', 'Glyma.11G189100' => 'gma', 'Glyma.12G072500' => 'gma', 'Glyma.12G085500' => 'gma', 'Glyma.12G181800' => 'gma', 'Glyma.12G193000' => 'gma', 'Glyma.13G309300' => 'gma', 'Glyma.13G319000' => 'gma', 'Glyma.17G012600' => 'gma', 'Gohir.A06G148600' => 'ghi', 'Gohir.A07G115800' => 'ghi', 'Gohir.A08G003600' => 'ghi', 'Gohir.A09G093300' => 'ghi', 'Gohir.A09G105400' => 'ghi', 'Gohir.A09G105500' => 'ghi', 'Gohir.D06G154600' => 'ghi', 'Gohir.D07G120200' => 'ghi', 'Gohir.D08G013900' => 'ghi', 'Gohir.D09G093100' => 'ghi', 'Gohir.D09G102200' => 'ghi', 'Gohir.D09G102300' => 'ghi', 'Gorai.001G129400' => 'gra', 'Gorai.004G008200' => 'gra', 'Gorai.006G109800' => 'gra', 'Gorai.006G119500' => 'gra', 'Gorai.006G121300' => 'gra', 'Gorai.010G180700' => 'gra', 'GSVIVG01012716001' => 'vvi', 'GSVIVG01025118001' => 'vvi', 'GSVIVG01030439001' => 'vvi', 'GSVIVG01031397001' => 'vvi', 'HanXRQChr01g0004201' => 'han', 'HanXRQChr02g0054941' => 'han', 'HanXRQChr05g0141811' => 'han', 'HanXRQChr07g0197751' => 'han', 'HanXRQChr11g0346691' => 'han', 'HanXRQChr13g0396971' => 'han', 'HanXRQChr14g0432951' => 'han', 'HanXRQChr14g0452001' => 'han', 'HanXRQChr15g0496681' => 'han', 'HanXRQChr17g0557491' => 'han', 'HanXRQChr17g0557501' => 'han', 'Haze_06809' => 'cav', 'Haze_12852' => 'cav', 'Haze_15850' => 'cav', 'Haze_23446' => 'cav', 'Haze_23942' => 'cav', 'Haze_23943' => 'cav', 'Hma1.2p1_0091F.1_g046450' => 'hma', 'Hma1.2p1_0128F.1_g059910' => 'hma', 'Hma1.2p1_0249F.1_g102260' => 'hma', 'Hma1.2p1_0453F.1_g156190' => 'hma', 'Hma1.2p1_0695F.1_g204380' => 'hma', 'Hma1.2p1_0749F.1_g212650' => 'hma', 'Hma1.2p1_2156F.1_g315420' => 'hma', 'Hma1.2p1_2686F.1_g326940' => 'hma', 'HPP92_006428' => 'vpl', 'HPP92_012069' => 'vpl', 'HPP92_014129' => 'vpl', 'HPP92_014133' => 'vpl', 'HPP92_017315' => 'vpl', 'HPP92_026445' => 'vpl', 'HPP92_026446' => 'vpl', 'Hund00774' => 'sun', 'Hund07682' => 'sun', 'Hund21413' => 'sun', 'Hund23462' => 'sun', 'Hund23463' => 'sun', 'Lalb_Chr03g0027911' => 'lal', 'Lalb_Chr13g0304271' => 'lal', 'Lalb_Chr19g0137471' => 'lal', 'Lalb_Chr22g0350651' => 'lal', 'Lalb_Chr24g0395151' => 'lal', 'Lj1A1231T40' => 'lonja', 'Lj1A221T48' => 'lonja', 'Lj1C924T12' => 'lonja', 'Lj2C993G6' => 'lonja', 'Lj3g0005790' => 'lja', 'Lj3g0015432' => 'lja', 'Lj3g0017722' => 'lja', 'Lj3g0018497' => 'lja', 'Lj4g0025071' => 'lja', 'Lsat_1_v5_gn_1_129680' => 'lsa', 'Lsat_1_v5_gn_2_25321' => 'lsa', 'Lsat_1_v5_gn_2_95461' => 'lsa', 'Lsat_1_v5_gn_4_159620' => 'lsa', 'Lsat_1_v5_gn_6_41301' => 'lsa', 'Lsat_1_v5_gn_6_74660' => 'lsa', 'Lsat_1_v5_gn_7_11520' => 'lsa', 'Lsat_1_v5_gn_9_67680' => 'lsa', 'Manes.04G008300' => 'mes', 'Manes.04G008400' => 'mes', 'Manes.04G026500' => 'mes', 'Manes.10G135300' => 'mes', 'Manes.11G157300' => 'mes', 'Manes.12G074000' => 'mes', 'Manes.16G006200' => 'mes', 'Manes.17G026400' => 'mes', 'Mapoly0024s0086' => 'mpo', 'Mapoly0024s0087' => 'mpo', 'Mapoly0071s0057' => 'mpo', 'Mapoly0204s0012' => 'mpo', 'MBI04_g37681_MAGBIO' => 'mbi', 'MBI05_g17779_MAGBIO' => 'mbi', 'MBI12_g31184_MAGBIO' => 'mbi', 'MBI17_g11083_MAGBIO' => 'mbi', 'MBI18_g03883_MAGBIO' => 'mbi', 'MBI18_g28940_MAGBIO' => 'mbi', 'MCO01G690' => 'mco', 'MD03G1109900' => 'mdo', 'MD03G1134800' => 'mdo', 'MD05G1348000' => 'mdo', 'MD10G1322400' => 'mdo', 'MD11G1123300' => 'mdo', 'MD11G1157600' => 'mdo', 'Medtr2g084875' => 'mtr', 'Medtr2g088130' => 'mtr', 'Medtr4g055310' => 'mtr', 'Medtr4g061070' => 'mtr', 'Medtr4g132250' => 'mtr', 'MELO3C004795.2' => 'cme', 'MELO3C004797.2' => 'cme', 'MELO3C007396.2' => 'cme', 'MELO3C019277.2' => 'cme', 'MELO3C021449.2' => 'cme', 'MELO3C025736.2' => 'cme', 'Migut.D02175' => 'egut', 'Migut.H01573' => 'egut', 'Migut.M01327' => 'egut', 'Migut.N02513' => 'egut', 'MSTRG.14638' => 'ama', 'MSTRG.18632' => 'ama', 'MSTRG.7203' => 'ama', 'Nitab4.5_0000533g0140' => 'nta', 'Nitab4.5_0000888g0150' => 'nta', 'Nitab4.5_0001453g0040' => 'nta', 'Nitab4.5_0002827g0090' => 'nta', 'Nitab4.5_0003082g0040' => 'nta', 'Nitab4.5_0007799g0040' => 'nta', 'Nitab4.5_0008983g0010' => 'nta', 'Nitab4.5_0009017g0020' => 'nta', 'Nn1g02132' => 'nnu', 'Nn1g03492' => 'nnu', 'Nn1g03493' => 'nnu', 'Nn1g03494' => 'nnu', 'Nn1g07164' => 'nnu', 'Nn1g07291' => 'nnu', 'Nn2g10655' => 'nnu', 'Nn2g11652' => 'nnu', 'Nn2g14008' => 'nnu', 'Nn3g17476' => 'nnu', 'Nn3g17477' => 'nnu', 'Nn4g22370' => 'nnu', 'Nn4g25255' => 'nnu', 'Nn5g27755' => 'nnu', 'Nn6g34260' => 'nnu', 'Nn6g35041' => 'nnu', 'Oeu005924.1' => 'oeu', 'Oeu008383.1' => 'oeu', 'Oeu014928.1' => 'oeu', 'Oeu019889.1' => 'oeu', 'Oeu022271.1' => 'oeu', 'Oeu025271.1' => 'oeu', 'Oeu036302.1' => 'oeu', 'Oeu044100.1' => 'oeu', 'Os01g0528300' => 'osa', 'Os03g0286200' => 'osa', 'Os04g0406600' => 'osa', 'Os07g0512000' => 'osa', 'Os07g0694600' => 'osa', 'Os08g0411000' => 'osa', 'Os09g0565700' => 'osa', 'Os09g0566050' => 'osa', 'Os10g0523700' => 'osa', 'Peaxi162Scf00002g00514' => 'pax', 'Peaxi162Scf00047g01817' => 'pax', 'Peaxi162Scf00114g00001' => 'pax', 'Peaxi162Scf00147g00613' => 'pax', 'Peaxi162Scf00389g00425' => 'pax', 'PGR042G1139' => 'pgr', 'PGR042G3273' => 'pgr', 'PGR102G2180' => 'pgr', 'PGR119G0234' => 'pgr', 'PGR119G0668' => 'pgr', 'PGSC0003DMG400007122' => 'stu', 'PGSC0003DMG400016478' => 'stu', 'PGSC0003DMG400025374' => 'stu', 'PGSC0003DMG400026536' => 'stu', 'Phvul.003G079600' => 'pvu', 'Phvul.005G115600' => 'pvu', 'Phvul.005G127100' => 'pvu', 'Phvul.006G149500' => 'pvu', 'Phvul.006G149600' => 'pvu', 'Phvul.011G071800' => 'pvu', 'Phvul.011G090400' => 'pvu', 'Potri.004G013400' => 'ptr', 'Potri.004G188100' => 'ptr', 'Potri.008G195500' => 'ptr', 'Potri.009G148800' => 'ptr', 'Potri.011G004700' => 'ptr', 'Pp3c17_22810' => 'ppa', 'Pp3c18_4480' => 'ppa', 'Pp3c19_13030' => 'ppa', 'Pp3c1_33620' => 'ppa', 'Pp3c2_9380' => 'ppa', 'PRCOL_00001023' => 'pco', 'Prupe.3G216300' => 'ppe', 'Prupe.4G019500' => 'ppe', 'Prupe.6G092500' => 'ppe', 'Prupe.6G119200' => 'ppe', 'Psat0s1945g0080' => 'psa', 'Psat0s4167g0040' => 'psa', 'Psat1g185800' => 'psa', 'Psat4g006440' => 'psa', 'Psat4g006480' => 'psa', 'Psat4g168120' => 'psa', 'Psat5g255680' => 'psa', 'Psat5g261760' => 'psa', 'Psat7g222120' => 'psa', 'PSO063G7252' => 'pso', 'PSO170G4778' => 'pso', 'PSO210G2249' => 'pso', 'PSO339G2411' => 'pso', 'PSO339G2457' => 'pso', 'PSO339G2854' => 'pso', 'PSO339G4288' => 'pso', 'PSO339G4615' => 'pso', 'PSO384G2796' => 'pso', 'PSO384G2940' => 'pso', 'PSO384G4227' => 'pso', 'PSO478G1425' => 'pso', 'PSO541G3863' => 'pso', 'PSO675G0507' => 'pso', 'PSO782G0338' => 'pso', 'PSO832G0644' => 'pso', 'QL01p013664' => 'qlo', 'QL01p036598' => 'qlo', 'QL05p072984' => 'qlo', 'QL08p005768' => 'qlo', 'QL08p032743' => 'qlo', 'QL93p0073_0439' => 'qlo', 'QL93p0073_0444' => 'qlo', 'RcHm_v2.0_Chr5g0002851' => 'rch', 'RcHm_v2.0_Chr5g0055201' => 'rch', 'RcHm_v2.0_Chr5g0061191' => 'rch', 'RcHm_v2.0_Chr7g0203231' => 'rch', 'Rhsim01G0208100' => 'rsi', 'Rhsim01G0208200' => 'rsi', 'Rhsim02G0106500' => 'rsi', 'Rhsim03G0107900' => 'rsi', 'Rhsim06G0163400' => 'rsi', 'Rhsim13G0105200' => 'rsi', 'Sabra04G0006300' => 'sbr', 'Sabra04G0127000' => 'sbr', 'Sabra08G0148700' => 'sbr', 'Sabra09G0117400' => 'sbr', 'SalBow1G3326' => 'sbo', 'SalBow3G3228' => 'sbo', 'SalBow6G1634' => 'sbo', 'SalBow6G3603' => 'sbo', 'SalBow6G5266' => 'sbo', 'SalBow7G2265' => 'sbo', 'SalBow8G0850' => 'sbo', 'SalBow8G2592' => 'sbo', 'Sc05g0009240' => 'sci', 'Sc12g0002300' => 'sci', 'Sc21g0000100' => 'sci', 'Sc21g0004720' => 'sci', 'Sed0002949' => 'sed', 'Sed0004114' => 'sed', 'Sed0004306' => 'sed', 'Sed0006172' => 'sed', 'Sed0008413' => 'sed', 'Sed0013809' => 'sed', 'Sed0019556' => 'sed', 'SEGI_03570' => 'sgi', 'SEGI_07859' => 'sgi', 'SEGI_15042' => 'sgi', 'SEGI_16263' => 'sgi', 'SEGI_16552' => 'sgi', 'SEGI_24331' => 'sgi', 'SEGI_27316' => 'sgi', 'SEGI_29521' => 'sgi', 'SEGI_41342' => 'sgi', 'SGA_v2.0_scaffold27G11617' => 'sas', 'SGA_v2.0_scaffold316G48428' => 'sas', 'SGA_v2.0_scaffold49G18261' => 'sas', 'SGA_v2.0_scaffold7G03831' => 'sas', 'SGA_v2.0_scaffold93G28359' => 'sas', 'SHI02210' => 'shi', 'SHI06028' => 'shi', 'SHI06321' => 'shi', 'SMO111G0012' => 'smo', 'SMO228G0080' => 'smo', 'SMO356G0756' => 'smo', 'Solyc02g080620.3' => 'sly', 'Solyc06g074530.1' => 'sly', 'Solyc11g066890.1' => 'sly', 'Solyc11g072520.3' => 'sly', 'Sopen02g025330' => 'spe', 'Sopen06g031000' => 'spe', 'Sopen09g008240' => 'spe', 'Sopen09g025210' => 'spe', 'Sopen11g026600' => 'spe', 'Sopen11g030170' => 'spe', 'Sp1g10420' => 'spa', 'Sp3g06570' => 'spa', 'Sp4g10660' => 'spa', 'Sp5g16460' => 'spa', 'Sp6g22710' => 'spa', 'TAR365G0112' => 'tar', 'TAR369G0717' => 'tar', 'TAR374G0976' => 'tar', 'TAR623G1128' => 'tar', 'TAR626G1937' => 'tar', 'TAR627G0123' => 'tar', 'TAR628G0305' => 'tar', 'TAR636G1176' => 'tar', 'TAR636G2442' => 'tar', 'THA.LOC104800556' => 'tha', 'THA.LOC104809501' => 'tha', 'THA.LOC104815126' => 'tha', 'THA.LOC104815732' => 'tha', 'THA.LOC104823528' => 'tha', 'Thecc.02G365600' => 'tca', 'Thecc.06G222300' => 'tca', 'Thecc.09G261800' => 'tca', 'Thecc.09G291400' => 'tca', 'Thhalv10003028m.g' => 'esa', 'Thhalv10007886m.g' => 'esa', 'Thhalv10016085m.g' => 'esa', 'Thhalv10016681m.g' => 'esa', 'Thhalv10020951m.g' => 'esa', 'TPR.G15598' => 'tpr', 'TPR.G29305' => 'tpr', 'TPR.G32395' => 'tpr', 'TPR.G36998' => 'tpr', 'TPR.G4227' => 'tpr', 'TWI18G1433' => 'twi', 'TWI31G0755' => 'twi', 'TWI38G0912' => 'twi', 'TWI75G1097' => 'twi', 'TWI75G1619' => 'twi', 'TWI79G1336' => 'twi', 'unitig_0.g943' => 'ugi', 'unitig_0.g944' => 'ugi', 'unitig_22.g6646' => 'ugi', 'unitig_37.g12681' => 'ugi', 'unitig_8.g3290' => 'ugi', 'vmacro03278' => 'vma', 'vmacro12197' => 'vma', 'vmacro14478' => 'vma', 'vmacro15787' => 'vma', 'vmacro15789' => 'vma', 'vmacro15790' => 'vma', 'vmacro15806' => 'vma', 'vmacro22907' => 'vma', 'vmacro22908' => 'vma', 'vmacro22909' => 'vma', 'vmacro23108' => 'vma', 'VMungo0540G0540' => 'vmu', 'VMungo0540G2468' => 'vmu', 'VMungo1080G0390' => 'vmu', 'VMungo1080G1165' => 'vmu', 'VMungo1127G0170' => 'vmu', 'VMungo1127G2099' => 'vmu', 'VMungo1215G3013' => 'vmu', 'Zm00001eb013110' => 'zma', 'Zm00001eb084260' => 'zma', 'Zm00001eb096110' => 'zma', 'Zm00001eb217510' => 'zma', 'Zm00001eb322550' => 'zma', 'Zm00001eb390770' => 'zma', 'Zm00001eb397170' => 'zma', 'Zm00001eb404610' => 'zma', 'Zm00001eb421790' => 'zma' ) $gf_id = 'HOM05D000911' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000911' ) $data_identifier = 'HOM05D000911' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 16, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 5, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 6, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 8, 'nnu' => (int) 16, 'oeu' => (int) 8, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 5, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 16, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421790' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000911', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27780' => 'bna', 'A03p35380' => 'bna', 'A04p21160' => 'bna', 'A05p40570' => 'bna', 'A06p26900' => 'bna', 'A08p33230' => 'bna', 'A09p65960' => 'bna', 'A10p18290' => 'bna', 'Aa31LG1G12990' => 'aar', 'Aa31LG1G2980' => 'aar', 'Aa31LG4G14320' => 'aar', 'Aa31LG7G11800' => 'aar', 'Aa31sc36G50' => 'aar', 'Aa31sc36G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3721' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5459' => 'aag', 'Actinidia03028' => 'ach', 'Actinidia03753' => 'ach', 'Actinidia04187' => 'ach', 'Actinidia05509' => 'ach', 'Actinidia24180' => 'ach', 'Actinidia26906' => 'ach', 'Actinidia37097' => 'ach', 'Actinidia38249' => 'ach', 'Ah.01g003470' => 'amhyb', 'Ah.01g004580' => 'amhyb', 'Ah.01g014850' => 'amhyb', 'Ah.01g016830' => 'amhyb', 'Ah.14g088000' => 'amhyb', 'AL1G22980' => 'aly', 'AL3G18990' => 'aly', 'AL4G22440' => 'aly', 'AL4G33180' => 'aly', 'AL5G22920' => 'aly', 'AL6G33660' => 'aly', 'AL8G20720' => 'aly', 'Aqoxy1G00935' => 'aox', 'Aqoxy1G02094' => 'aox', 'Aqoxy2G01239' => 'aox', 'Aqoxy4G01870' => 'aox', 'Aqoxy7G00450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.36ZVTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71EM27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5D6C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH3WRE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3NCM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RIM768' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YB5YRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z36GDV' => 'arhy', 'AT1G08250' => 'ath', 'AT1G11790' => 'ath', 'AT2G27820' => 'ath', 'AT3G07630' => 'ath', 'AT3G44720' => 'ath', 'AT5G22630' => 'ath', 'ATR0693G304' => 'atr', 'ATR0794G109' => 'atr', 'ATR0820G120' => 'atr', 'ATR1159G064' => 'atr', 'Atru.chr10.2239' => 'acertr', 'Atru.chr3.3371' => 'acertr', 'Atru.chr6.3202' => 'acertr', 'AUR62006499' => 'cqu', 'AUR62012718' => 'cqu', 'AUR62021938' => 'cqu', 'AUR62023932' => 'cqu', 'AUR62025034' => 'cqu', 'AUR62025035' => 'cqu', 'AUR62038307' => 'cqu', 'AUR62043466' => 'cqu', 'BcaB02g10748' => 'bca', 'BcaB03g13231' => 'bca', 'BcaB03g14689' => 'bca', 'BcaB05g22716' => 'bca', 'BcaB06g28172' => 'bca', 'BcaB08g36413' => 'bca', 'BcaC01g02186' => 'bca', 'BcaC01g04272' => 'bca', 'BcaC02g08080' => 'bca', 'BcaC02g08227' => 'bca', 'BcaC03g13901' => 'bca', 'BcaC04g19593' => 'bca', 'BcaC04g20874' => 'bca', 'BcaC05g29557' => 'bca', 'BcaC06g35505' => 'bca', 'BcaC07g41954' => 'bca', 'BcaC07g41955' => 'bca', 'BcaC07g41956' => 'bca', 'BcaC07g42519' => 'bca', 'BcaC07g42520' => 'bca', 'BcaC07g42523' => 'bca', 'BcaC07g42524' => 'bca', 'BcaC07g42525' => 'bca', 'BcaC08g47480' => 'bca', 'BcaC08g47481' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00530' => 'bna', 'BolC2t07178H' => 'bol', 'BolC3t16567H' => 'bol', 'BolC4t27234H' => 'bol', 'BolC5t29728H' => 'bol', 'BolC5t34622H' => 'bol', 'BolC6t40321H' => 'bol', 'BolC7t42028H' => 'bol', 'BolC8t49125H' => 'bol', 'BolC8t52538H' => 'bol', 'BolC8t52539H' => 'bol', 'BolC9t56681H' => 'bol', 'BolC9t58266H' => 'bol', 'BolSC21t60294H' => 'bol', 'BraA02t05670Z' => 'bra', 'BraA03t12716Z' => 'bra', 'BraA04t17685Z' => 'bra', 'BraA05t22788Z' => 'bra', 'BraA06t24032Z' => 'bra', 'BraA06t25625Z' => 'bra', 'BraA07t27930Z' => 'bra', 'BraA08t35242Z' => 'bra', 'BraA09t38609Z' => 'bra', 'BraA10t43905Z' => 'bra', 'C02p11060' => 'bna', 'C03p42990' => 'bna', 'C03p67310' => 'bna', 'C04p56990' => 'bna', 'C04p58660' => 'bna', 'C05p09890' => 'bna', 'C05p59680' => 'bna', 'C06p19830' => 'bna', 'C06p53040' => 'bna', 'C07p15230' => 'bna', 'C08p50070' => 'bna', 'C08p50090' => 'bna', 'C09p38330' => 'bna', 'C09p53940' => 'bna', 'CAN.G1014.1' => 'can', 'CAN.G644.30' => 'can', 'CAN.G84.47' => 'can', 'CAN.G919.8' => 'can', 'CANSAT54G0113' => 'cansat', 'CANSAT54G1286' => 'cansat', 'CANSAT64G1020' => 'cansat', 'CARHR008080' => 'chi', 'CARHR008090' => 'chi', 'CARHR012130' => 'chi', 'CARHR038390' => 'chi', 'CARHR082330' => 'chi', 'CARHR120520' => 'chi', 'CARHR151470' => 'chi', 'CARHR190950' => 'chi', 'Carub.0001s0760' => 'cru', 'Carub.0001s1146' => 'cru', 'Carub.0003s0721' => 'cru', 'Carub.0004s0858' => 'cru', 'Carub.0005s1040' => 'cru', 'Carub.0006s2035' => 'cru', 'Carub.0015s0005' => 'cru', 'Ca_01607_v3' => 'car', 'Ca_01677_v3' => 'car', 'Ca_06087_v3' => 'car', 'Ca_19238_v3' => 'car', 'Ca_19373_v3' => 'car', 'Ca_21079_v3' => 'car', 'CBR_g54016' => 'cbr', 'CBR_g54018' => 'cbr', 'CBR_g54020' => 'cbr', 'Cc01_g09780' => 'ccan', 'Cc01_g11680' => 'ccan', 'Cc02_g15610' => 'ccan', 'Cc05_g04350' => 'ccan', 'Cc09_g01580' => 'ccan', 'CDE01G0795' => 'cde', 'CDE02G2024' => 'cde', 'CDE02G2260' => 'cde', 'CDE02G4561' => 'cde', 'CDE05G2733' => 'cde', 'CDE05G3422' => 'cde', 'CDE06G2003' => 'cde', 'CDE08G0576' => 'cde', 'CDE09G0048' => 'cde', 'CDE11G0805' => 'cde', 'Cfa003644' => 'cfa', 'Cfa006290' => 'cfa', 'Cfa010080' => 'cfa', 'Cfa011376' => 'cfa', 'Cfa011576' => 'cfa', 'Cfa011577' => 'cfa', 'Cfa014389' => 'cfa', 'Ciclev10006044m.g' => 'ccl', 'Ciclev10006954m.g' => 'ccl', 'Ciclev10015131m.g' => 'ccl', 'Ciclev10015580m.g' => 'ccl', 'Ciclev10028359m.g' => 'ccl', 'Ciclev10028573m.g' => 'ccl', 'CiPaw.03G159300' => 'cil', 'CiPaw.04G115100' => 'cil', 'CiPaw.09G092800' => 'cil', 'CiPaw.10G071800' => 'cil', 'CiPaw.13G105800' => 'cil', 'CiPaw.13G141000' => 'cil', 'CiPaw.14G103400' => 'cil', 'ClCG01G012700' => 'cla', 'ClCG01G012720' => 'cla', 'ClCG01G021920' => 'cla', 'ClCG02G008870' => 'cla', 'ClCG02G020840' => 'cla', 'ClCG02G021930' => 'cla', 'COL.COLO4_19302' => 'col', 'COL.COLO4_25262' => 'col', 'COL.COLO4_31788' => 'col', 'Cpa.g.c34684' => 'cpa', 'Cpa.g.c36520.1' => 'cpa', 'Cpa.g.c45626' => 'cpa', 'Cpa.g.sc121.17' => 'cpa', 'Cpa.g.sc13.22' => 'cpa', 'Cpa.g.sc87.88' => 'cpa', 'Cre06.g261800' => 'cre', 'CsaV3_1G014500' => 'csa', 'CsaV3_1G014510' => 'csa', 'CsaV3_2G034880' => 'csa', 'CsaV3_6G014760' => 'csa', 'CsaV3_6G021500' => 'csa', 'CsaV3_6G048980' => 'csa', 'CSS0002511' => 'camsi', 'CSS0007556' => 'camsi', 'CSS0008532' => 'camsi', 'CSS0009709' => 'camsi', 'CSS0010486' => 'camsi', 'CSS0016768' => 'camsi', 'CSS0023512' => 'camsi', 'CSS0025341' => 'camsi', 'CSS0027999' => 'camsi', 'CSS0028944' => 'camsi', 'CSS0032292' => 'camsi', 'CSS0032464' => 'camsi', 'CSS0037153' => 'camsi', 'CSS0039256' => 'camsi', 'CSS0048392' => 'camsi', 'CSS0050458' => 'camsi', 'DCAR_004224' => 'dca', 'DCAR_006147' => 'dca', 'DCAR_006465' => 'dca', 'DCAR_008159' => 'dca', 'DCAR_012164' => 'dca', 'DCAR_019764' => 'dca', 'Dinv05418' => 'din', 'Dinv10839' => 'din', 'Dinv12521' => 'din', 'Dinv13900' => 'din', 'Dinv29426' => 'din', 'Duzib150G0263' => 'dzi', 'Duzib168G1178' => 'dzi', 'Duzib168G1924' => 'dzi', 'Duzib170G0299' => 'dzi', 'Duzib170G0813' => 'dzi', 'Duzib235G1128' => 'dzi', 'Duzib248G1060' => 'dzi', 'ECA232G1910' => 'eca', 'ECA233G4621' => 'eca', 'ECA238G1216' => 'eca', 'ECA238G1784' => 'eca', 'ECA248G1242' => 'eca', 'EL10Ac8g20071' => 'bvu', 'EL10Ac9g21086' => 'bvu', 'EL10Ac9g22407' => 'bvu', 'EL10Ac9g22412' => 'bvu', 'Eucgr.A01119' => 'egr', 'Eucgr.E04043' => 'egr', 'Eucgr.J00428' => 'egr', 'Eucgr.J00958' => 'egr', 'FAN11G3091' => 'fan', 'FAN11G3651' => 'fan', 'FAN16G2566' => 'fan', 'FAN21G3155' => 'fan', 'FAN21G3400' => 'fan', 'FAN21G3543' => 'fan', 'FAN25G0234' => 'fan', 'FAN25G1422' => 'fan', 'FAN25G3392' => 'fan', 'FvH4_3g01940' => 'fve', 'FvH4_3g29870' => 'fve', 'FvH4_3g33680' => 'fve', 'Glyma.09G004200' => 'gma', 'Glyma.11G151288' => 'gma', 'Glyma.11G189100' => 'gma', 'Glyma.12G072500' => 'gma', 'Glyma.12G085500' => 'gma', 'Glyma.12G181800' => 'gma', 'Glyma.12G193000' => 'gma', 'Glyma.13G309300' => 'gma', 'Glyma.13G319000' => 'gma', 'Glyma.17G012600' => 'gma', 'Gohir.A06G148600' => 'ghi', 'Gohir.A07G115800' => 'ghi', 'Gohir.A08G003600' => 'ghi', 'Gohir.A09G093300' => 'ghi', 'Gohir.A09G105400' => 'ghi', 'Gohir.A09G105500' => 'ghi', 'Gohir.D06G154600' => 'ghi', 'Gohir.D07G120200' => 'ghi', 'Gohir.D08G013900' => 'ghi', 'Gohir.D09G093100' => 'ghi', 'Gohir.D09G102200' => 'ghi', 'Gohir.D09G102300' => 'ghi', 'Gorai.001G129400' => 'gra', 'Gorai.004G008200' => 'gra', 'Gorai.006G109800' => 'gra', 'Gorai.006G119500' => 'gra', 'Gorai.006G121300' => 'gra', 'Gorai.010G180700' => 'gra', 'GSVIVG01012716001' => 'vvi', 'GSVIVG01025118001' => 'vvi', 'GSVIVG01030439001' => 'vvi', 'GSVIVG01031397001' => 'vvi', 'HanXRQChr01g0004201' => 'han', 'HanXRQChr02g0054941' => 'han', 'HanXRQChr05g0141811' => 'han', 'HanXRQChr07g0197751' => 'han', 'HanXRQChr11g0346691' => 'han', 'HanXRQChr13g0396971' => 'han', 'HanXRQChr14g0432951' => 'han', 'HanXRQChr14g0452001' => 'han', 'HanXRQChr15g0496681' => 'han', 'HanXRQChr17g0557491' => 'han', 'HanXRQChr17g0557501' => 'han', 'Haze_06809' => 'cav', 'Haze_12852' => 'cav', 'Haze_15850' => 'cav', 'Haze_23446' => 'cav', 'Haze_23942' => 'cav', 'Haze_23943' => 'cav', 'Hma1.2p1_0091F.1_g046450' => 'hma', 'Hma1.2p1_0128F.1_g059910' => 'hma', 'Hma1.2p1_0249F.1_g102260' => 'hma', 'Hma1.2p1_0453F.1_g156190' => 'hma', 'Hma1.2p1_0695F.1_g204380' => 'hma', 'Hma1.2p1_0749F.1_g212650' => 'hma', 'Hma1.2p1_2156F.1_g315420' => 'hma', 'Hma1.2p1_2686F.1_g326940' => 'hma', 'HPP92_006428' => 'vpl', 'HPP92_012069' => 'vpl', 'HPP92_014129' => 'vpl', 'HPP92_014133' => 'vpl', 'HPP92_017315' => 'vpl', 'HPP92_026445' => 'vpl', 'HPP92_026446' => 'vpl', 'Hund00774' => 'sun', 'Hund07682' => 'sun', 'Hund21413' => 'sun', 'Hund23462' => 'sun', 'Hund23463' => 'sun', 'Lalb_Chr03g0027911' => 'lal', 'Lalb_Chr13g0304271' => 'lal', 'Lalb_Chr19g0137471' => 'lal', 'Lalb_Chr22g0350651' => 'lal', 'Lalb_Chr24g0395151' => 'lal', 'Lj1A1231T40' => 'lonja', 'Lj1A221T48' => 'lonja', 'Lj1C924T12' => 'lonja', 'Lj2C993G6' => 'lonja', 'Lj3g0005790' => 'lja', 'Lj3g0015432' => 'lja', 'Lj3g0017722' => 'lja', 'Lj3g0018497' => 'lja', 'Lj4g0025071' => 'lja', 'Lsat_1_v5_gn_1_129680' => 'lsa', 'Lsat_1_v5_gn_2_25321' => 'lsa', 'Lsat_1_v5_gn_2_95461' => 'lsa', 'Lsat_1_v5_gn_4_159620' => 'lsa', 'Lsat_1_v5_gn_6_41301' => 'lsa', 'Lsat_1_v5_gn_6_74660' => 'lsa', 'Lsat_1_v5_gn_7_11520' => 'lsa', 'Lsat_1_v5_gn_9_67680' => 'lsa', 'Manes.04G008300' => 'mes', 'Manes.04G008400' => 'mes', 'Manes.04G026500' => 'mes', 'Manes.10G135300' => 'mes', 'Manes.11G157300' => 'mes', 'Manes.12G074000' => 'mes', 'Manes.16G006200' => 'mes', 'Manes.17G026400' => 'mes', 'Mapoly0024s0086' => 'mpo', 'Mapoly0024s0087' => 'mpo', 'Mapoly0071s0057' => 'mpo', 'Mapoly0204s0012' => 'mpo', 'MBI04_g37681_MAGBIO' => 'mbi', 'MBI05_g17779_MAGBIO' => 'mbi', 'MBI12_g31184_MAGBIO' => 'mbi', 'MBI17_g11083_MAGBIO' => 'mbi', 'MBI18_g03883_MAGBIO' => 'mbi', 'MBI18_g28940_MAGBIO' => 'mbi', 'MCO01G690' => 'mco', 'MD03G1109900' => 'mdo', 'MD03G1134800' => 'mdo', 'MD05G1348000' => 'mdo', 'MD10G1322400' => 'mdo', 'MD11G1123300' => 'mdo', 'MD11G1157600' => 'mdo', 'Medtr2g084875' => 'mtr', 'Medtr2g088130' => 'mtr', 'Medtr4g055310' => 'mtr', 'Medtr4g061070' => 'mtr', 'Medtr4g132250' => 'mtr', 'MELO3C004795.2' => 'cme', 'MELO3C004797.2' => 'cme', 'MELO3C007396.2' => 'cme', 'MELO3C019277.2' => 'cme', 'MELO3C021449.2' => 'cme', 'MELO3C025736.2' => 'cme', 'Migut.D02175' => 'egut', 'Migut.H01573' => 'egut', 'Migut.M01327' => 'egut', 'Migut.N02513' => 'egut', 'MSTRG.14638' => 'ama', 'MSTRG.18632' => 'ama', 'MSTRG.7203' => 'ama', 'Nitab4.5_0000533g0140' => 'nta', 'Nitab4.5_0000888g0150' => 'nta', 'Nitab4.5_0001453g0040' => 'nta', 'Nitab4.5_0002827g0090' => 'nta', 'Nitab4.5_0003082g0040' => 'nta', 'Nitab4.5_0007799g0040' => 'nta', 'Nitab4.5_0008983g0010' => 'nta', 'Nitab4.5_0009017g0020' => 'nta', 'Nn1g02132' => 'nnu', 'Nn1g03492' => 'nnu', 'Nn1g03493' => 'nnu', 'Nn1g03494' => 'nnu', 'Nn1g07164' => 'nnu', 'Nn1g07291' => 'nnu', 'Nn2g10655' => 'nnu', 'Nn2g11652' => 'nnu', 'Nn2g14008' => 'nnu', 'Nn3g17476' => 'nnu', 'Nn3g17477' => 'nnu', 'Nn4g22370' => 'nnu', 'Nn4g25255' => 'nnu', 'Nn5g27755' => 'nnu', 'Nn6g34260' => 'nnu', 'Nn6g35041' => 'nnu', 'Oeu005924.1' => 'oeu', 'Oeu008383.1' => 'oeu', 'Oeu014928.1' => 'oeu', 'Oeu019889.1' => 'oeu', 'Oeu022271.1' => 'oeu', 'Oeu025271.1' => 'oeu', 'Oeu036302.1' => 'oeu', 'Oeu044100.1' => 'oeu', 'Os01g0528300' => 'osa', 'Os03g0286200' => 'osa', 'Os04g0406600' => 'osa', 'Os07g0512000' => 'osa', 'Os07g0694600' => 'osa', 'Os08g0411000' => 'osa', 'Os09g0565700' => 'osa', 'Os09g0566050' => 'osa', 'Os10g0523700' => 'osa', 'Peaxi162Scf00002g00514' => 'pax', 'Peaxi162Scf00047g01817' => 'pax', 'Peaxi162Scf00114g00001' => 'pax', 'Peaxi162Scf00147g00613' => 'pax', 'Peaxi162Scf00389g00425' => 'pax', 'PGR042G1139' => 'pgr', 'PGR042G3273' => 'pgr', 'PGR102G2180' => 'pgr', 'PGR119G0234' => 'pgr', 'PGR119G0668' => 'pgr', 'PGSC0003DMG400007122' => 'stu', 'PGSC0003DMG400016478' => 'stu', 'PGSC0003DMG400025374' => 'stu', 'PGSC0003DMG400026536' => 'stu', 'Phvul.003G079600' => 'pvu', 'Phvul.005G115600' => 'pvu', 'Phvul.005G127100' => 'pvu', 'Phvul.006G149500' => 'pvu', 'Phvul.006G149600' => 'pvu', 'Phvul.011G071800' => 'pvu', 'Phvul.011G090400' => 'pvu', 'Potri.004G013400' => 'ptr', 'Potri.004G188100' => 'ptr', 'Potri.008G195500' => 'ptr', 'Potri.009G148800' => 'ptr', 'Potri.011G004700' => 'ptr', 'Pp3c17_22810' => 'ppa', 'Pp3c18_4480' => 'ppa', 'Pp3c19_13030' => 'ppa', 'Pp3c1_33620' => 'ppa', 'Pp3c2_9380' => 'ppa', 'PRCOL_00001023' => 'pco', 'Prupe.3G216300' => 'ppe', 'Prupe.4G019500' => 'ppe', 'Prupe.6G092500' => 'ppe', 'Prupe.6G119200' => 'ppe', 'Psat0s1945g0080' => 'psa', 'Psat0s4167g0040' => 'psa', 'Psat1g185800' => 'psa', 'Psat4g006440' => 'psa', 'Psat4g006480' => 'psa', 'Psat4g168120' => 'psa', 'Psat5g255680' => 'psa', 'Psat5g261760' => 'psa', 'Psat7g222120' => 'psa', 'PSO063G7252' => 'pso', 'PSO170G4778' => 'pso', 'PSO210G2249' => 'pso', 'PSO339G2411' => 'pso', 'PSO339G2457' => 'pso', 'PSO339G2854' => 'pso', 'PSO339G4288' => 'pso', 'PSO339G4615' => 'pso', 'PSO384G2796' => 'pso', 'PSO384G2940' => 'pso', 'PSO384G4227' => 'pso', 'PSO478G1425' => 'pso', 'PSO541G3863' => 'pso', 'PSO675G0507' => 'pso', 'PSO782G0338' => 'pso', 'PSO832G0644' => 'pso', 'QL01p013664' => 'qlo', 'QL01p036598' => 'qlo', 'QL05p072984' => 'qlo', 'QL08p005768' => 'qlo', 'QL08p032743' => 'qlo', 'QL93p0073_0439' => 'qlo', 'QL93p0073_0444' => 'qlo', 'RcHm_v2.0_Chr5g0002851' => 'rch', 'RcHm_v2.0_Chr5g0055201' => 'rch', 'RcHm_v2.0_Chr5g0061191' => 'rch', 'RcHm_v2.0_Chr7g0203231' => 'rch', 'Rhsim01G0208100' => 'rsi', 'Rhsim01G0208200' => 'rsi', 'Rhsim02G0106500' => 'rsi', 'Rhsim03G0107900' => 'rsi', 'Rhsim06G0163400' => 'rsi', 'Rhsim13G0105200' => 'rsi', 'Sabra04G0006300' => 'sbr', 'Sabra04G0127000' => 'sbr', 'Sabra08G0148700' => 'sbr', 'Sabra09G0117400' => 'sbr', 'SalBow1G3326' => 'sbo', 'SalBow3G3228' => 'sbo', 'SalBow6G1634' => 'sbo', 'SalBow6G3603' => 'sbo', 'SalBow6G5266' => 'sbo', 'SalBow7G2265' => 'sbo', 'SalBow8G0850' => 'sbo', 'SalBow8G2592' => 'sbo', 'Sc05g0009240' => 'sci', 'Sc12g0002300' => 'sci', 'Sc21g0000100' => 'sci', 'Sc21g0004720' => 'sci', 'Sed0002949' => 'sed', 'Sed0004114' => 'sed', 'Sed0004306' => 'sed', 'Sed0006172' => 'sed', 'Sed0008413' => 'sed', 'Sed0013809' => 'sed', 'Sed0019556' => 'sed', 'SEGI_03570' => 'sgi', 'SEGI_07859' => 'sgi', 'SEGI_15042' => 'sgi', 'SEGI_16263' => 'sgi', 'SEGI_16552' => 'sgi', 'SEGI_24331' => 'sgi', 'SEGI_27316' => 'sgi', 'SEGI_29521' => 'sgi', 'SEGI_41342' => 'sgi', 'SGA_v2.0_scaffold27G11617' => 'sas', 'SGA_v2.0_scaffold316G48428' => 'sas', 'SGA_v2.0_scaffold49G18261' => 'sas', 'SGA_v2.0_scaffold7G03831' => 'sas', 'SGA_v2.0_scaffold93G28359' => 'sas', 'SHI02210' => 'shi', 'SHI06028' => 'shi', 'SHI06321' => 'shi', 'SMO111G0012' => 'smo', 'SMO228G0080' => 'smo', 'SMO356G0756' => 'smo', 'Solyc02g080620.3' => 'sly', 'Solyc06g074530.1' => 'sly', 'Solyc11g066890.1' => 'sly', 'Solyc11g072520.3' => 'sly', 'Sopen02g025330' => 'spe', 'Sopen06g031000' => 'spe', 'Sopen09g008240' => 'spe', 'Sopen09g025210' => 'spe', 'Sopen11g026600' => 'spe', 'Sopen11g030170' => 'spe', 'Sp1g10420' => 'spa', 'Sp3g06570' => 'spa', 'Sp4g10660' => 'spa', 'Sp5g16460' => 'spa', 'Sp6g22710' => 'spa', 'TAR365G0112' => 'tar', 'TAR369G0717' => 'tar', 'TAR374G0976' => 'tar', 'TAR623G1128' => 'tar', 'TAR626G1937' => 'tar', 'TAR627G0123' => 'tar', 'TAR628G0305' => 'tar', 'TAR636G1176' => 'tar', 'TAR636G2442' => 'tar', 'THA.LOC104800556' => 'tha', 'THA.LOC104809501' => 'tha', 'THA.LOC104815126' => 'tha', 'THA.LOC104815732' => 'tha', 'THA.LOC104823528' => 'tha', 'Thecc.02G365600' => 'tca', 'Thecc.06G222300' => 'tca', 'Thecc.09G261800' => 'tca', 'Thecc.09G291400' => 'tca', 'Thhalv10003028m.g' => 'esa', 'Thhalv10007886m.g' => 'esa', 'Thhalv10016085m.g' => 'esa', 'Thhalv10016681m.g' => 'esa', 'Thhalv10020951m.g' => 'esa', 'TPR.G15598' => 'tpr', 'TPR.G29305' => 'tpr', 'TPR.G32395' => 'tpr', 'TPR.G36998' => 'tpr', 'TPR.G4227' => 'tpr', 'TWI18G1433' => 'twi', 'TWI31G0755' => 'twi', 'TWI38G0912' => 'twi', 'TWI75G1097' => 'twi', 'TWI75G1619' => 'twi', 'TWI79G1336' => 'twi', 'unitig_0.g943' => 'ugi', 'unitig_0.g944' => 'ugi', 'unitig_22.g6646' => 'ugi', 'unitig_37.g12681' => 'ugi', 'unitig_8.g3290' => 'ugi', 'vmacro03278' => 'vma', 'vmacro12197' => 'vma', 'vmacro14478' => 'vma', 'vmacro15787' => 'vma', 'vmacro15789' => 'vma', 'vmacro15790' => 'vma', 'vmacro15806' => 'vma', 'vmacro22907' => 'vma', 'vmacro22908' => 'vma', 'vmacro22909' => 'vma', 'vmacro23108' => 'vma', 'VMungo0540G0540' => 'vmu', 'VMungo0540G2468' => 'vmu', 'VMungo1080G0390' => 'vmu', 'VMungo1080G1165' => 'vmu', 'VMungo1127G0170' => 'vmu', 'VMungo1127G2099' => 'vmu', 'VMungo1215G3013' => 'vmu', 'Zm00001eb013110' => 'zma', 'Zm00001eb084260' => 'zma', 'Zm00001eb096110' => 'zma', 'Zm00001eb217510' => 'zma', 'Zm00001eb322550' => 'zma', 'Zm00001eb390770' => 'zma', 'Zm00001eb397170' => 'zma', 'Zm00001eb404610' => 'zma', 'Zm00001eb421790' => 'zma' ), 'gf_id' => 'HOM05D000911', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000911' ), 'data_identifier' => 'HOM05D000911', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000911', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27780' => 'bna', 'A03p35380' => 'bna', 'A04p21160' => 'bna', 'A05p40570' => 'bna', 'A06p26900' => 'bna', 'A08p33230' => 'bna', 'A09p65960' => 'bna', 'A10p18290' => 'bna', 'Aa31LG1G12990' => 'aar', 'Aa31LG1G2980' => 'aar', 'Aa31LG4G14320' => 'aar', 'Aa31LG7G11800' => 'aar', 'Aa31sc36G50' => 'aar', 'Aa31sc36G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3721' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5459' => 'aag', 'Actinidia03028' => 'ach', 'Actinidia03753' => 'ach', 'Actinidia04187' => 'ach', 'Actinidia05509' => 'ach', 'Actinidia24180' => 'ach', 'Actinidia26906' => 'ach', 'Actinidia37097' => 'ach', 'Actinidia38249' => 'ach', 'Ah.01g003470' => 'amhyb', 'Ah.01g004580' => 'amhyb', 'Ah.01g014850' => 'amhyb', 'Ah.01g016830' => 'amhyb', 'Ah.14g088000' => 'amhyb', 'AL1G22980' => 'aly', 'AL3G18990' => 'aly', 'AL4G22440' => 'aly', 'AL4G33180' => 'aly', 'AL5G22920' => 'aly', 'AL6G33660' => 'aly', 'AL8G20720' => 'aly', 'Aqoxy1G00935' => 'aox', 'Aqoxy1G02094' => 'aox', 'Aqoxy2G01239' => 'aox', 'Aqoxy4G01870' => 'aox', 'Aqoxy7G00450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.36ZVTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71EM27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5D6C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH3WRE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3NCM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RIM768' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YB5YRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z36GDV' => 'arhy', 'AT1G08250' => 'ath', 'AT1G11790' => 'ath', 'AT2G27820' => 'ath', 'AT3G07630' => 'ath', 'AT3G44720' => 'ath', 'AT5G22630' => 'ath', 'ATR0693G304' => 'atr', 'ATR0794G109' => 'atr', 'ATR0820G120' => 'atr', 'ATR1159G064' => 'atr', 'Atru.chr10.2239' => 'acertr', 'Atru.chr3.3371' => 'acertr', 'Atru.chr6.3202' => 'acertr', 'AUR62006499' => 'cqu', 'AUR62012718' => 'cqu', 'AUR62021938' => 'cqu', 'AUR62023932' => 'cqu', 'AUR62025034' => 'cqu', 'AUR62025035' => 'cqu', 'AUR62038307' => 'cqu', 'AUR62043466' => 'cqu', 'BcaB02g10748' => 'bca', 'BcaB03g13231' => 'bca', 'BcaB03g14689' => 'bca', 'BcaB05g22716' => 'bca', 'BcaB06g28172' => 'bca', 'BcaB08g36413' => 'bca', 'BcaC01g02186' => 'bca', 'BcaC01g04272' => 'bca', 'BcaC02g08080' => 'bca', 'BcaC02g08227' => 'bca', 'BcaC03g13901' => 'bca', 'BcaC04g19593' => 'bca', 'BcaC04g20874' => 'bca', 'BcaC05g29557' => 'bca', 'BcaC06g35505' => 'bca', 'BcaC07g41954' => 'bca', 'BcaC07g41955' => 'bca', 'BcaC07g41956' => 'bca', 'BcaC07g42519' => 'bca', 'BcaC07g42520' => 'bca', 'BcaC07g42523' => 'bca', 'BcaC07g42524' => 'bca', 'BcaC07g42525' => 'bca', 'BcaC08g47480' => 'bca', 'BcaC08g47481' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00530' => 'bna', 'BolC2t07178H' => 'bol', 'BolC3t16567H' => 'bol', 'BolC4t27234H' => 'bol', 'BolC5t29728H' => 'bol', 'BolC5t34622H' => 'bol', 'BolC6t40321H' => 'bol', 'BolC7t42028H' => 'bol', 'BolC8t49125H' => 'bol', 'BolC8t52538H' => 'bol', 'BolC8t52539H' => 'bol', 'BolC9t56681H' => 'bol', 'BolC9t58266H' => 'bol', 'BolSC21t60294H' => 'bol', 'BraA02t05670Z' => 'bra', 'BraA03t12716Z' => 'bra', 'BraA04t17685Z' => 'bra', 'BraA05t22788Z' => 'bra', 'BraA06t24032Z' => 'bra', 'BraA06t25625Z' => 'bra', 'BraA07t27930Z' => 'bra', 'BraA08t35242Z' => 'bra', 'BraA09t38609Z' => 'bra', 'BraA10t43905Z' => 'bra', 'C02p11060' => 'bna', 'C03p42990' => 'bna', 'C03p67310' => 'bna', 'C04p56990' => 'bna', 'C04p58660' => 'bna', 'C05p09890' => 'bna', 'C05p59680' => 'bna', 'C06p19830' => 'bna', 'C06p53040' => 'bna', 'C07p15230' => 'bna', 'C08p50070' => 'bna', 'C08p50090' => 'bna', 'C09p38330' => 'bna', 'C09p53940' => 'bna', 'CAN.G1014.1' => 'can', 'CAN.G644.30' => 'can', 'CAN.G84.47' => 'can', 'CAN.G919.8' => 'can', 'CANSAT54G0113' => 'cansat', 'CANSAT54G1286' => 'cansat', 'CANSAT64G1020' => 'cansat', 'CARHR008080' => 'chi', 'CARHR008090' => 'chi', 'CARHR012130' => 'chi', 'CARHR038390' => 'chi', 'CARHR082330' => 'chi', 'CARHR120520' => 'chi', 'CARHR151470' => 'chi', 'CARHR190950' => 'chi', 'Carub.0001s0760' => 'cru', 'Carub.0001s1146' => 'cru', 'Carub.0003s0721' => 'cru', 'Carub.0004s0858' => 'cru', 'Carub.0005s1040' => 'cru', 'Carub.0006s2035' => 'cru', 'Carub.0015s0005' => 'cru', 'Ca_01607_v3' => 'car', 'Ca_01677_v3' => 'car', 'Ca_06087_v3' => 'car', 'Ca_19238_v3' => 'car', 'Ca_19373_v3' => 'car', 'Ca_21079_v3' => 'car', 'CBR_g54016' => 'cbr', 'CBR_g54018' => 'cbr', 'CBR_g54020' => 'cbr', 'Cc01_g09780' => 'ccan', 'Cc01_g11680' => 'ccan', 'Cc02_g15610' => 'ccan', 'Cc05_g04350' => 'ccan', 'Cc09_g01580' => 'ccan', 'CDE01G0795' => 'cde', 'CDE02G2024' => 'cde', 'CDE02G2260' => 'cde', 'CDE02G4561' => 'cde', 'CDE05G2733' => 'cde', 'CDE05G3422' => 'cde', 'CDE06G2003' => 'cde', 'CDE08G0576' => 'cde', 'CDE09G0048' => 'cde', 'CDE11G0805' => 'cde', 'Cfa003644' => 'cfa', 'Cfa006290' => 'cfa', 'Cfa010080' => 'cfa', 'Cfa011376' => 'cfa', 'Cfa011576' => 'cfa', 'Cfa011577' => 'cfa', 'Cfa014389' => 'cfa', 'Ciclev10006044m.g' => 'ccl', 'Ciclev10006954m.g' => 'ccl', 'Ciclev10015131m.g' => 'ccl', 'Ciclev10015580m.g' => 'ccl', 'Ciclev10028359m.g' => 'ccl', 'Ciclev10028573m.g' => 'ccl', 'CiPaw.03G159300' => 'cil', 'CiPaw.04G115100' => 'cil', 'CiPaw.09G092800' => 'cil', 'CiPaw.10G071800' => 'cil', 'CiPaw.13G105800' => 'cil', 'CiPaw.13G141000' => 'cil', 'CiPaw.14G103400' => 'cil', 'ClCG01G012700' => 'cla', 'ClCG01G012720' => 'cla', 'ClCG01G021920' => 'cla', 'ClCG02G008870' => 'cla', 'ClCG02G020840' => 'cla', 'ClCG02G021930' => 'cla', 'COL.COLO4_19302' => 'col', 'COL.COLO4_25262' => 'col', 'COL.COLO4_31788' => 'col', 'Cpa.g.c34684' => 'cpa', 'Cpa.g.c36520.1' => 'cpa', 'Cpa.g.c45626' => 'cpa', 'Cpa.g.sc121.17' => 'cpa', 'Cpa.g.sc13.22' => 'cpa', 'Cpa.g.sc87.88' => 'cpa', 'Cre06.g261800' => 'cre', 'CsaV3_1G014500' => 'csa', 'CsaV3_1G014510' => 'csa', 'CsaV3_2G034880' => 'csa', 'CsaV3_6G014760' => 'csa', 'CsaV3_6G021500' => 'csa', 'CsaV3_6G048980' => 'csa', 'CSS0002511' => 'camsi', 'CSS0007556' => 'camsi', 'CSS0008532' => 'camsi', 'CSS0009709' => 'camsi', 'CSS0010486' => 'camsi', 'CSS0016768' => 'camsi', 'CSS0023512' => 'camsi', 'CSS0025341' => 'camsi', 'CSS0027999' => 'camsi', 'CSS0028944' => 'camsi', 'CSS0032292' => 'camsi', 'CSS0032464' => 'camsi', 'CSS0037153' => 'camsi', 'CSS0039256' => 'camsi', 'CSS0048392' => 'camsi', 'CSS0050458' => 'camsi', 'DCAR_004224' => 'dca', 'DCAR_006147' => 'dca', 'DCAR_006465' => 'dca', 'DCAR_008159' => 'dca', 'DCAR_012164' => 'dca', 'DCAR_019764' => 'dca', 'Dinv05418' => 'din', 'Dinv10839' => 'din', 'Dinv12521' => 'din', 'Dinv13900' => 'din', 'Dinv29426' => 'din', 'Duzib150G0263' => 'dzi', 'Duzib168G1178' => 'dzi', 'Duzib168G1924' => 'dzi', 'Duzib170G0299' => 'dzi', 'Duzib170G0813' => 'dzi', 'Duzib235G1128' => 'dzi', 'Duzib248G1060' => 'dzi', 'ECA232G1910' => 'eca', 'ECA233G4621' => 'eca', 'ECA238G1216' => 'eca', 'ECA238G1784' => 'eca', 'ECA248G1242' => 'eca', 'EL10Ac8g20071' => 'bvu', 'EL10Ac9g21086' => 'bvu', 'EL10Ac9g22407' => 'bvu', 'EL10Ac9g22412' => 'bvu', 'Eucgr.A01119' => 'egr', 'Eucgr.E04043' => 'egr', 'Eucgr.J00428' => 'egr', 'Eucgr.J00958' => 'egr', 'FAN11G3091' => 'fan', 'FAN11G3651' => 'fan', 'FAN16G2566' => 'fan', 'FAN21G3155' => 'fan', 'FAN21G3400' => 'fan', 'FAN21G3543' => 'fan', 'FAN25G0234' => 'fan', 'FAN25G1422' => 'fan', 'FAN25G3392' => 'fan', 'FvH4_3g01940' => 'fve', 'FvH4_3g29870' => 'fve', 'FvH4_3g33680' => 'fve', 'Glyma.09G004200' => 'gma', 'Glyma.11G151288' => 'gma', 'Glyma.11G189100' => 'gma', 'Glyma.12G072500' => 'gma', 'Glyma.12G085500' => 'gma', 'Glyma.12G181800' => 'gma', 'Glyma.12G193000' => 'gma', 'Glyma.13G309300' => 'gma', 'Glyma.13G319000' => 'gma', 'Glyma.17G012600' => 'gma', 'Gohir.A06G148600' => 'ghi', 'Gohir.A07G115800' => 'ghi', 'Gohir.A08G003600' => 'ghi', 'Gohir.A09G093300' => 'ghi', 'Gohir.A09G105400' => 'ghi', 'Gohir.A09G105500' => 'ghi', 'Gohir.D06G154600' => 'ghi', 'Gohir.D07G120200' => 'ghi', 'Gohir.D08G013900' => 'ghi', 'Gohir.D09G093100' => 'ghi', 'Gohir.D09G102200' => 'ghi', 'Gohir.D09G102300' => 'ghi', 'Gorai.001G129400' => 'gra', 'Gorai.004G008200' => 'gra', 'Gorai.006G109800' => 'gra', 'Gorai.006G119500' => 'gra', 'Gorai.006G121300' => 'gra', 'Gorai.010G180700' => 'gra', 'GSVIVG01012716001' => 'vvi', 'GSVIVG01025118001' => 'vvi', 'GSVIVG01030439001' => 'vvi', 'GSVIVG01031397001' => 'vvi', 'HanXRQChr01g0004201' => 'han', 'HanXRQChr02g0054941' => 'han', 'HanXRQChr05g0141811' => 'han', 'HanXRQChr07g0197751' => 'han', 'HanXRQChr11g0346691' => 'han', 'HanXRQChr13g0396971' => 'han', 'HanXRQChr14g0432951' => 'han', 'HanXRQChr14g0452001' => 'han', 'HanXRQChr15g0496681' => 'han', 'HanXRQChr17g0557491' => 'han', 'HanXRQChr17g0557501' => 'han', 'Haze_06809' => 'cav', 'Haze_12852' => 'cav', 'Haze_15850' => 'cav', 'Haze_23446' => 'cav', 'Haze_23942' => 'cav', 'Haze_23943' => 'cav', 'Hma1.2p1_0091F.1_g046450' => 'hma', 'Hma1.2p1_0128F.1_g059910' => 'hma', 'Hma1.2p1_0249F.1_g102260' => 'hma', 'Hma1.2p1_0453F.1_g156190' => 'hma', 'Hma1.2p1_0695F.1_g204380' => 'hma', 'Hma1.2p1_0749F.1_g212650' => 'hma', 'Hma1.2p1_2156F.1_g315420' => 'hma', 'Hma1.2p1_2686F.1_g326940' => 'hma', 'HPP92_006428' => 'vpl', 'HPP92_012069' => 'vpl', 'HPP92_014129' => 'vpl', 'HPP92_014133' => 'vpl', 'HPP92_017315' => 'vpl', 'HPP92_026445' => 'vpl', 'HPP92_026446' => 'vpl', 'Hund00774' => 'sun', 'Hund07682' => 'sun', 'Hund21413' => 'sun', 'Hund23462' => 'sun', 'Hund23463' => 'sun', 'Lalb_Chr03g0027911' => 'lal', 'Lalb_Chr13g0304271' => 'lal', 'Lalb_Chr19g0137471' => 'lal', 'Lalb_Chr22g0350651' => 'lal', 'Lalb_Chr24g0395151' => 'lal', 'Lj1A1231T40' => 'lonja', 'Lj1A221T48' => 'lonja', 'Lj1C924T12' => 'lonja', 'Lj2C993G6' => 'lonja', 'Lj3g0005790' => 'lja', 'Lj3g0015432' => 'lja', 'Lj3g0017722' => 'lja', 'Lj3g0018497' => 'lja', 'Lj4g0025071' => 'lja', 'Lsat_1_v5_gn_1_129680' => 'lsa', 'Lsat_1_v5_gn_2_25321' => 'lsa', 'Lsat_1_v5_gn_2_95461' => 'lsa', 'Lsat_1_v5_gn_4_159620' => 'lsa', 'Lsat_1_v5_gn_6_41301' => 'lsa', 'Lsat_1_v5_gn_6_74660' => 'lsa', 'Lsat_1_v5_gn_7_11520' => 'lsa', 'Lsat_1_v5_gn_9_67680' => 'lsa', 'Manes.04G008300' => 'mes', 'Manes.04G008400' => 'mes', 'Manes.04G026500' => 'mes', 'Manes.10G135300' => 'mes', 'Manes.11G157300' => 'mes', 'Manes.12G074000' => 'mes', 'Manes.16G006200' => 'mes', 'Manes.17G026400' => 'mes', 'Mapoly0024s0086' => 'mpo', 'Mapoly0024s0087' => 'mpo', 'Mapoly0071s0057' => 'mpo', 'Mapoly0204s0012' => 'mpo', 'MBI04_g37681_MAGBIO' => 'mbi', 'MBI05_g17779_MAGBIO' => 'mbi', 'MBI12_g31184_MAGBIO' => 'mbi', 'MBI17_g11083_MAGBIO' => 'mbi', 'MBI18_g03883_MAGBIO' => 'mbi', 'MBI18_g28940_MAGBIO' => 'mbi', 'MCO01G690' => 'mco', 'MD03G1109900' => 'mdo', 'MD03G1134800' => 'mdo', 'MD05G1348000' => 'mdo', 'MD10G1322400' => 'mdo', 'MD11G1123300' => 'mdo', 'MD11G1157600' => 'mdo', 'Medtr2g084875' => 'mtr', 'Medtr2g088130' => 'mtr', 'Medtr4g055310' => 'mtr', 'Medtr4g061070' => 'mtr', 'Medtr4g132250' => 'mtr', 'MELO3C004795.2' => 'cme', 'MELO3C004797.2' => 'cme', 'MELO3C007396.2' => 'cme', 'MELO3C019277.2' => 'cme', 'MELO3C021449.2' => 'cme', 'MELO3C025736.2' => 'cme', 'Migut.D02175' => 'egut', 'Migut.H01573' => 'egut', 'Migut.M01327' => 'egut', 'Migut.N02513' => 'egut', 'MSTRG.14638' => 'ama', 'MSTRG.18632' => 'ama', 'MSTRG.7203' => 'ama', 'Nitab4.5_0000533g0140' => 'nta', 'Nitab4.5_0000888g0150' => 'nta', 'Nitab4.5_0001453g0040' => 'nta', 'Nitab4.5_0002827g0090' => 'nta', 'Nitab4.5_0003082g0040' => 'nta', 'Nitab4.5_0007799g0040' => 'nta', 'Nitab4.5_0008983g0010' => 'nta', 'Nitab4.5_0009017g0020' => 'nta', 'Nn1g02132' => 'nnu', 'Nn1g03492' => 'nnu', 'Nn1g03493' => 'nnu', 'Nn1g03494' => 'nnu', 'Nn1g07164' => 'nnu', 'Nn1g07291' => 'nnu', 'Nn2g10655' => 'nnu', 'Nn2g11652' => 'nnu', 'Nn2g14008' => 'nnu', 'Nn3g17476' => 'nnu', 'Nn3g17477' => 'nnu', 'Nn4g22370' => 'nnu', 'Nn4g25255' => 'nnu', 'Nn5g27755' => 'nnu', 'Nn6g34260' => 'nnu', 'Nn6g35041' => 'nnu', 'Oeu005924.1' => 'oeu', 'Oeu008383.1' => 'oeu', 'Oeu014928.1' => 'oeu', 'Oeu019889.1' => 'oeu', 'Oeu022271.1' => 'oeu', 'Oeu025271.1' => 'oeu', 'Oeu036302.1' => 'oeu', 'Oeu044100.1' => 'oeu', 'Os01g0528300' => 'osa', 'Os03g0286200' => 'osa', 'Os04g0406600' => 'osa', 'Os07g0512000' => 'osa', 'Os07g0694600' => 'osa', 'Os08g0411000' => 'osa', 'Os09g0565700' => 'osa', 'Os09g0566050' => 'osa', 'Os10g0523700' => 'osa', 'Peaxi162Scf00002g00514' => 'pax', 'Peaxi162Scf00047g01817' => 'pax', 'Peaxi162Scf00114g00001' => 'pax', 'Peaxi162Scf00147g00613' => 'pax', 'Peaxi162Scf00389g00425' => 'pax', 'PGR042G1139' => 'pgr', 'PGR042G3273' => 'pgr', 'PGR102G2180' => 'pgr', 'PGR119G0234' => 'pgr', 'PGR119G0668' => 'pgr', 'PGSC0003DMG400007122' => 'stu', 'PGSC0003DMG400016478' => 'stu', 'PGSC0003DMG400025374' => 'stu', 'PGSC0003DMG400026536' => 'stu', 'Phvul.003G079600' => 'pvu', 'Phvul.005G115600' => 'pvu', 'Phvul.005G127100' => 'pvu', 'Phvul.006G149500' => 'pvu', 'Phvul.006G149600' => 'pvu', 'Phvul.011G071800' => 'pvu', 'Phvul.011G090400' => 'pvu', 'Potri.004G013400' => 'ptr', 'Potri.004G188100' => 'ptr', 'Potri.008G195500' => 'ptr', 'Potri.009G148800' => 'ptr', 'Potri.011G004700' => 'ptr', 'Pp3c17_22810' => 'ppa', 'Pp3c18_4480' => 'ppa', 'Pp3c19_13030' => 'ppa', 'Pp3c1_33620' => 'ppa', 'Pp3c2_9380' => 'ppa', 'PRCOL_00001023' => 'pco', 'Prupe.3G216300' => 'ppe', 'Prupe.4G019500' => 'ppe', 'Prupe.6G092500' => 'ppe', 'Prupe.6G119200' => 'ppe', 'Psat0s1945g0080' => 'psa', 'Psat0s4167g0040' => 'psa', 'Psat1g185800' => 'psa', 'Psat4g006440' => 'psa', 'Psat4g006480' => 'psa', 'Psat4g168120' => 'psa', 'Psat5g255680' => 'psa', 'Psat5g261760' => 'psa', 'Psat7g222120' => 'psa', 'PSO063G7252' => 'pso', 'PSO170G4778' => 'pso', 'PSO210G2249' => 'pso', 'PSO339G2411' => 'pso', 'PSO339G2457' => 'pso', 'PSO339G2854' => 'pso', 'PSO339G4288' => 'pso', 'PSO339G4615' => 'pso', 'PSO384G2796' => 'pso', 'PSO384G2940' => 'pso', 'PSO384G4227' => 'pso', 'PSO478G1425' => 'pso', 'PSO541G3863' => 'pso', 'PSO675G0507' => 'pso', 'PSO782G0338' => 'pso', 'PSO832G0644' => 'pso', 'QL01p013664' => 'qlo', 'QL01p036598' => 'qlo', 'QL05p072984' => 'qlo', 'QL08p005768' => 'qlo', 'QL08p032743' => 'qlo', 'QL93p0073_0439' => 'qlo', 'QL93p0073_0444' => 'qlo', 'RcHm_v2.0_Chr5g0002851' => 'rch', 'RcHm_v2.0_Chr5g0055201' => 'rch', 'RcHm_v2.0_Chr5g0061191' => 'rch', 'RcHm_v2.0_Chr7g0203231' => 'rch', 'Rhsim01G0208100' => 'rsi', 'Rhsim01G0208200' => 'rsi', 'Rhsim02G0106500' => 'rsi', 'Rhsim03G0107900' => 'rsi', 'Rhsim06G0163400' => 'rsi', 'Rhsim13G0105200' => 'rsi', 'Sabra04G0006300' => 'sbr', 'Sabra04G0127000' => 'sbr', 'Sabra08G0148700' => 'sbr', 'Sabra09G0117400' => 'sbr', 'SalBow1G3326' => 'sbo', 'SalBow3G3228' => 'sbo', 'SalBow6G1634' => 'sbo', 'SalBow6G3603' => 'sbo', 'SalBow6G5266' => 'sbo', 'SalBow7G2265' => 'sbo', 'SalBow8G0850' => 'sbo', 'SalBow8G2592' => 'sbo', 'Sc05g0009240' => 'sci', 'Sc12g0002300' => 'sci', 'Sc21g0000100' => 'sci', 'Sc21g0004720' => 'sci', 'Sed0002949' => 'sed', 'Sed0004114' => 'sed', 'Sed0004306' => 'sed', 'Sed0006172' => 'sed', 'Sed0008413' => 'sed', 'Sed0013809' => 'sed', 'Sed0019556' => 'sed', 'SEGI_03570' => 'sgi', 'SEGI_07859' => 'sgi', 'SEGI_15042' => 'sgi', 'SEGI_16263' => 'sgi', 'SEGI_16552' => 'sgi', 'SEGI_24331' => 'sgi', 'SEGI_27316' => 'sgi', 'SEGI_29521' => 'sgi', 'SEGI_41342' => 'sgi', 'SGA_v2.0_scaffold27G11617' => 'sas', 'SGA_v2.0_scaffold316G48428' => 'sas', 'SGA_v2.0_scaffold49G18261' => 'sas', 'SGA_v2.0_scaffold7G03831' => 'sas', 'SGA_v2.0_scaffold93G28359' => 'sas', 'SHI02210' => 'shi', 'SHI06028' => 'shi', 'SHI06321' => 'shi', 'SMO111G0012' => 'smo', 'SMO228G0080' => 'smo', 'SMO356G0756' => 'smo', 'Solyc02g080620.3' => 'sly', 'Solyc06g074530.1' => 'sly', 'Solyc11g066890.1' => 'sly', 'Solyc11g072520.3' => 'sly', 'Sopen02g025330' => 'spe', 'Sopen06g031000' => 'spe', 'Sopen09g008240' => 'spe', 'Sopen09g025210' => 'spe', 'Sopen11g026600' => 'spe', 'Sopen11g030170' => 'spe', 'Sp1g10420' => 'spa', 'Sp3g06570' => 'spa', 'Sp4g10660' => 'spa', 'Sp5g16460' => 'spa', 'Sp6g22710' => 'spa', 'TAR365G0112' => 'tar', 'TAR369G0717' => 'tar', 'TAR374G0976' => 'tar', 'TAR623G1128' => 'tar', 'TAR626G1937' => 'tar', 'TAR627G0123' => 'tar', 'TAR628G0305' => 'tar', 'TAR636G1176' => 'tar', 'TAR636G2442' => 'tar', 'THA.LOC104800556' => 'tha', 'THA.LOC104809501' => 'tha', 'THA.LOC104815126' => 'tha', 'THA.LOC104815732' => 'tha', 'THA.LOC104823528' => 'tha', 'Thecc.02G365600' => 'tca', 'Thecc.06G222300' => 'tca', 'Thecc.09G261800' => 'tca', 'Thecc.09G291400' => 'tca', 'Thhalv10003028m.g' => 'esa', 'Thhalv10007886m.g' => 'esa', 'Thhalv10016085m.g' => 'esa', 'Thhalv10016681m.g' => 'esa', 'Thhalv10020951m.g' => 'esa', 'TPR.G15598' => 'tpr', 'TPR.G29305' => 'tpr', 'TPR.G32395' => 'tpr', 'TPR.G36998' => 'tpr', 'TPR.G4227' => 'tpr', 'TWI18G1433' => 'twi', 'TWI31G0755' => 'twi', 'TWI38G0912' => 'twi', 'TWI75G1097' => 'twi', 'TWI75G1619' => 'twi', 'TWI79G1336' => 'twi', 'unitig_0.g943' => 'ugi', 'unitig_0.g944' => 'ugi', 'unitig_22.g6646' => 'ugi', 'unitig_37.g12681' => 'ugi', 'unitig_8.g3290' => 'ugi', 'vmacro03278' => 'vma', 'vmacro12197' => 'vma', 'vmacro14478' => 'vma', 'vmacro15787' => 'vma', 'vmacro15789' => 'vma', 'vmacro15790' => 'vma', 'vmacro15806' => 'vma', 'vmacro22907' => 'vma', 'vmacro22908' => 'vma', 'vmacro22909' => 'vma', 'vmacro23108' => 'vma', 'VMungo0540G0540' => 'vmu', 'VMungo0540G2468' => 'vmu', 'VMungo1080G0390' => 'vmu', 'VMungo1080G1165' => 'vmu', 'VMungo1127G0170' => 'vmu', 'VMungo1127G2099' => 'vmu', 'VMungo1215G3013' => 'vmu', 'Zm00001eb013110' => 'zma', 'Zm00001eb084260' => 'zma', 'Zm00001eb096110' => 'zma', 'Zm00001eb217510' => 'zma', 'Zm00001eb322550' => 'zma', 'Zm00001eb390770' => 'zma', 'Zm00001eb397170' => 'zma', 'Zm00001eb404610' => 'zma', 'Zm00001eb421790' => 'zma' ) $gf_id = 'HOM05D000911' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000911' ) $data_identifier = 'HOM05D000911' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 16, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 5, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 6, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 8, 'nnu' => (int) 16, 'oeu' => (int) 8, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 5, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 16, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421790' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000911', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27780' => 'bna', 'A03p35380' => 'bna', 'A04p21160' => 'bna', 'A05p40570' => 'bna', 'A06p26900' => 'bna', 'A08p33230' => 'bna', 'A09p65960' => 'bna', 'A10p18290' => 'bna', 'Aa31LG1G12990' => 'aar', 'Aa31LG1G2980' => 'aar', 'Aa31LG4G14320' => 'aar', 'Aa31LG7G11800' => 'aar', 'Aa31sc36G50' => 'aar', 'Aa31sc36G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3721' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5459' => 'aag', 'Actinidia03028' => 'ach', 'Actinidia03753' => 'ach', 'Actinidia04187' => 'ach', 'Actinidia05509' => 'ach', 'Actinidia24180' => 'ach', 'Actinidia26906' => 'ach', 'Actinidia37097' => 'ach', 'Actinidia38249' => 'ach', 'Ah.01g003470' => 'amhyb', 'Ah.01g004580' => 'amhyb', 'Ah.01g014850' => 'amhyb', 'Ah.01g016830' => 'amhyb', 'Ah.14g088000' => 'amhyb', 'AL1G22980' => 'aly', 'AL3G18990' => 'aly', 'AL4G22440' => 'aly', 'AL4G33180' => 'aly', 'AL5G22920' => 'aly', 'AL6G33660' => 'aly', 'AL8G20720' => 'aly', 'Aqoxy1G00935' => 'aox', 'Aqoxy1G02094' => 'aox', 'Aqoxy2G01239' => 'aox', 'Aqoxy4G01870' => 'aox', 'Aqoxy7G00450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.36ZVTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71EM27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5D6C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH3WRE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3NCM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RIM768' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YB5YRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z36GDV' => 'arhy', 'AT1G08250' => 'ath', 'AT1G11790' => 'ath', 'AT2G27820' => 'ath', 'AT3G07630' => 'ath', 'AT3G44720' => 'ath', 'AT5G22630' => 'ath', 'ATR0693G304' => 'atr', 'ATR0794G109' => 'atr', 'ATR0820G120' => 'atr', 'ATR1159G064' => 'atr', 'Atru.chr10.2239' => 'acertr', 'Atru.chr3.3371' => 'acertr', 'Atru.chr6.3202' => 'acertr', 'AUR62006499' => 'cqu', 'AUR62012718' => 'cqu', 'AUR62021938' => 'cqu', 'AUR62023932' => 'cqu', 'AUR62025034' => 'cqu', 'AUR62025035' => 'cqu', 'AUR62038307' => 'cqu', 'AUR62043466' => 'cqu', 'BcaB02g10748' => 'bca', 'BcaB03g13231' => 'bca', 'BcaB03g14689' => 'bca', 'BcaB05g22716' => 'bca', 'BcaB06g28172' => 'bca', 'BcaB08g36413' => 'bca', 'BcaC01g02186' => 'bca', 'BcaC01g04272' => 'bca', 'BcaC02g08080' => 'bca', 'BcaC02g08227' => 'bca', 'BcaC03g13901' => 'bca', 'BcaC04g19593' => 'bca', 'BcaC04g20874' => 'bca', 'BcaC05g29557' => 'bca', 'BcaC06g35505' => 'bca', 'BcaC07g41954' => 'bca', 'BcaC07g41955' => 'bca', 'BcaC07g41956' => 'bca', 'BcaC07g42519' => 'bca', 'BcaC07g42520' => 'bca', 'BcaC07g42523' => 'bca', 'BcaC07g42524' => 'bca', 'BcaC07g42525' => 'bca', 'BcaC08g47480' => 'bca', 'BcaC08g47481' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00530' => 'bna', 'BolC2t07178H' => 'bol', 'BolC3t16567H' => 'bol', 'BolC4t27234H' => 'bol', 'BolC5t29728H' => 'bol', 'BolC5t34622H' => 'bol', 'BolC6t40321H' => 'bol', 'BolC7t42028H' => 'bol', 'BolC8t49125H' => 'bol', 'BolC8t52538H' => 'bol', 'BolC8t52539H' => 'bol', 'BolC9t56681H' => 'bol', 'BolC9t58266H' => 'bol', 'BolSC21t60294H' => 'bol', 'BraA02t05670Z' => 'bra', 'BraA03t12716Z' => 'bra', 'BraA04t17685Z' => 'bra', 'BraA05t22788Z' => 'bra', 'BraA06t24032Z' => 'bra', 'BraA06t25625Z' => 'bra', 'BraA07t27930Z' => 'bra', 'BraA08t35242Z' => 'bra', 'BraA09t38609Z' => 'bra', 'BraA10t43905Z' => 'bra', 'C02p11060' => 'bna', 'C03p42990' => 'bna', 'C03p67310' => 'bna', 'C04p56990' => 'bna', 'C04p58660' => 'bna', 'C05p09890' => 'bna', 'C05p59680' => 'bna', 'C06p19830' => 'bna', 'C06p53040' => 'bna', 'C07p15230' => 'bna', 'C08p50070' => 'bna', 'C08p50090' => 'bna', 'C09p38330' => 'bna', 'C09p53940' => 'bna', 'CAN.G1014.1' => 'can', 'CAN.G644.30' => 'can', 'CAN.G84.47' => 'can', 'CAN.G919.8' => 'can', 'CANSAT54G0113' => 'cansat', 'CANSAT54G1286' => 'cansat', 'CANSAT64G1020' => 'cansat', 'CARHR008080' => 'chi', 'CARHR008090' => 'chi', 'CARHR012130' => 'chi', 'CARHR038390' => 'chi', 'CARHR082330' => 'chi', 'CARHR120520' => 'chi', 'CARHR151470' => 'chi', 'CARHR190950' => 'chi', 'Carub.0001s0760' => 'cru', 'Carub.0001s1146' => 'cru', 'Carub.0003s0721' => 'cru', 'Carub.0004s0858' => 'cru', 'Carub.0005s1040' => 'cru', 'Carub.0006s2035' => 'cru', 'Carub.0015s0005' => 'cru', 'Ca_01607_v3' => 'car', 'Ca_01677_v3' => 'car', 'Ca_06087_v3' => 'car', 'Ca_19238_v3' => 'car', 'Ca_19373_v3' => 'car', 'Ca_21079_v3' => 'car', 'CBR_g54016' => 'cbr', 'CBR_g54018' => 'cbr', 'CBR_g54020' => 'cbr', 'Cc01_g09780' => 'ccan', 'Cc01_g11680' => 'ccan', 'Cc02_g15610' => 'ccan', 'Cc05_g04350' => 'ccan', 'Cc09_g01580' => 'ccan', 'CDE01G0795' => 'cde', 'CDE02G2024' => 'cde', 'CDE02G2260' => 'cde', 'CDE02G4561' => 'cde', 'CDE05G2733' => 'cde', 'CDE05G3422' => 'cde', 'CDE06G2003' => 'cde', 'CDE08G0576' => 'cde', 'CDE09G0048' => 'cde', 'CDE11G0805' => 'cde', 'Cfa003644' => 'cfa', 'Cfa006290' => 'cfa', 'Cfa010080' => 'cfa', 'Cfa011376' => 'cfa', 'Cfa011576' => 'cfa', 'Cfa011577' => 'cfa', 'Cfa014389' => 'cfa', 'Ciclev10006044m.g' => 'ccl', 'Ciclev10006954m.g' => 'ccl', 'Ciclev10015131m.g' => 'ccl', 'Ciclev10015580m.g' => 'ccl', 'Ciclev10028359m.g' => 'ccl', 'Ciclev10028573m.g' => 'ccl', 'CiPaw.03G159300' => 'cil', 'CiPaw.04G115100' => 'cil', 'CiPaw.09G092800' => 'cil', 'CiPaw.10G071800' => 'cil', 'CiPaw.13G105800' => 'cil', 'CiPaw.13G141000' => 'cil', 'CiPaw.14G103400' => 'cil', 'ClCG01G012700' => 'cla', 'ClCG01G012720' => 'cla', 'ClCG01G021920' => 'cla', 'ClCG02G008870' => 'cla', 'ClCG02G020840' => 'cla', 'ClCG02G021930' => 'cla', 'COL.COLO4_19302' => 'col', 'COL.COLO4_25262' => 'col', 'COL.COLO4_31788' => 'col', 'Cpa.g.c34684' => 'cpa', 'Cpa.g.c36520.1' => 'cpa', 'Cpa.g.c45626' => 'cpa', 'Cpa.g.sc121.17' => 'cpa', 'Cpa.g.sc13.22' => 'cpa', 'Cpa.g.sc87.88' => 'cpa', 'Cre06.g261800' => 'cre', 'CsaV3_1G014500' => 'csa', 'CsaV3_1G014510' => 'csa', 'CsaV3_2G034880' => 'csa', 'CsaV3_6G014760' => 'csa', 'CsaV3_6G021500' => 'csa', 'CsaV3_6G048980' => 'csa', 'CSS0002511' => 'camsi', 'CSS0007556' => 'camsi', 'CSS0008532' => 'camsi', 'CSS0009709' => 'camsi', 'CSS0010486' => 'camsi', 'CSS0016768' => 'camsi', 'CSS0023512' => 'camsi', 'CSS0025341' => 'camsi', 'CSS0027999' => 'camsi', 'CSS0028944' => 'camsi', 'CSS0032292' => 'camsi', 'CSS0032464' => 'camsi', 'CSS0037153' => 'camsi', 'CSS0039256' => 'camsi', 'CSS0048392' => 'camsi', 'CSS0050458' => 'camsi', 'DCAR_004224' => 'dca', 'DCAR_006147' => 'dca', 'DCAR_006465' => 'dca', 'DCAR_008159' => 'dca', 'DCAR_012164' => 'dca', 'DCAR_019764' => 'dca', 'Dinv05418' => 'din', 'Dinv10839' => 'din', 'Dinv12521' => 'din', 'Dinv13900' => 'din', 'Dinv29426' => 'din', 'Duzib150G0263' => 'dzi', 'Duzib168G1178' => 'dzi', 'Duzib168G1924' => 'dzi', 'Duzib170G0299' => 'dzi', 'Duzib170G0813' => 'dzi', 'Duzib235G1128' => 'dzi', 'Duzib248G1060' => 'dzi', 'ECA232G1910' => 'eca', 'ECA233G4621' => 'eca', 'ECA238G1216' => 'eca', 'ECA238G1784' => 'eca', 'ECA248G1242' => 'eca', 'EL10Ac8g20071' => 'bvu', 'EL10Ac9g21086' => 'bvu', 'EL10Ac9g22407' => 'bvu', 'EL10Ac9g22412' => 'bvu', 'Eucgr.A01119' => 'egr', 'Eucgr.E04043' => 'egr', 'Eucgr.J00428' => 'egr', 'Eucgr.J00958' => 'egr', 'FAN11G3091' => 'fan', 'FAN11G3651' => 'fan', 'FAN16G2566' => 'fan', 'FAN21G3155' => 'fan', 'FAN21G3400' => 'fan', 'FAN21G3543' => 'fan', 'FAN25G0234' => 'fan', 'FAN25G1422' => 'fan', 'FAN25G3392' => 'fan', 'FvH4_3g01940' => 'fve', 'FvH4_3g29870' => 'fve', 'FvH4_3g33680' => 'fve', 'Glyma.09G004200' => 'gma', 'Glyma.11G151288' => 'gma', 'Glyma.11G189100' => 'gma', 'Glyma.12G072500' => 'gma', 'Glyma.12G085500' => 'gma', 'Glyma.12G181800' => 'gma', 'Glyma.12G193000' => 'gma', 'Glyma.13G309300' => 'gma', 'Glyma.13G319000' => 'gma', 'Glyma.17G012600' => 'gma', 'Gohir.A06G148600' => 'ghi', 'Gohir.A07G115800' => 'ghi', 'Gohir.A08G003600' => 'ghi', 'Gohir.A09G093300' => 'ghi', 'Gohir.A09G105400' => 'ghi', 'Gohir.A09G105500' => 'ghi', 'Gohir.D06G154600' => 'ghi', 'Gohir.D07G120200' => 'ghi', 'Gohir.D08G013900' => 'ghi', 'Gohir.D09G093100' => 'ghi', 'Gohir.D09G102200' => 'ghi', 'Gohir.D09G102300' => 'ghi', 'Gorai.001G129400' => 'gra', 'Gorai.004G008200' => 'gra', 'Gorai.006G109800' => 'gra', 'Gorai.006G119500' => 'gra', 'Gorai.006G121300' => 'gra', 'Gorai.010G180700' => 'gra', 'GSVIVG01012716001' => 'vvi', 'GSVIVG01025118001' => 'vvi', 'GSVIVG01030439001' => 'vvi', 'GSVIVG01031397001' => 'vvi', 'HanXRQChr01g0004201' => 'han', 'HanXRQChr02g0054941' => 'han', 'HanXRQChr05g0141811' => 'han', 'HanXRQChr07g0197751' => 'han', 'HanXRQChr11g0346691' => 'han', 'HanXRQChr13g0396971' => 'han', 'HanXRQChr14g0432951' => 'han', 'HanXRQChr14g0452001' => 'han', 'HanXRQChr15g0496681' => 'han', 'HanXRQChr17g0557491' => 'han', 'HanXRQChr17g0557501' => 'han', 'Haze_06809' => 'cav', 'Haze_12852' => 'cav', 'Haze_15850' => 'cav', 'Haze_23446' => 'cav', 'Haze_23942' => 'cav', 'Haze_23943' => 'cav', 'Hma1.2p1_0091F.1_g046450' => 'hma', 'Hma1.2p1_0128F.1_g059910' => 'hma', 'Hma1.2p1_0249F.1_g102260' => 'hma', 'Hma1.2p1_0453F.1_g156190' => 'hma', 'Hma1.2p1_0695F.1_g204380' => 'hma', 'Hma1.2p1_0749F.1_g212650' => 'hma', 'Hma1.2p1_2156F.1_g315420' => 'hma', 'Hma1.2p1_2686F.1_g326940' => 'hma', 'HPP92_006428' => 'vpl', 'HPP92_012069' => 'vpl', 'HPP92_014129' => 'vpl', 'HPP92_014133' => 'vpl', 'HPP92_017315' => 'vpl', 'HPP92_026445' => 'vpl', 'HPP92_026446' => 'vpl', 'Hund00774' => 'sun', 'Hund07682' => 'sun', 'Hund21413' => 'sun', 'Hund23462' => 'sun', 'Hund23463' => 'sun', 'Lalb_Chr03g0027911' => 'lal', 'Lalb_Chr13g0304271' => 'lal', 'Lalb_Chr19g0137471' => 'lal', 'Lalb_Chr22g0350651' => 'lal', 'Lalb_Chr24g0395151' => 'lal', 'Lj1A1231T40' => 'lonja', 'Lj1A221T48' => 'lonja', 'Lj1C924T12' => 'lonja', 'Lj2C993G6' => 'lonja', 'Lj3g0005790' => 'lja', 'Lj3g0015432' => 'lja', 'Lj3g0017722' => 'lja', 'Lj3g0018497' => 'lja', 'Lj4g0025071' => 'lja', 'Lsat_1_v5_gn_1_129680' => 'lsa', 'Lsat_1_v5_gn_2_25321' => 'lsa', 'Lsat_1_v5_gn_2_95461' => 'lsa', 'Lsat_1_v5_gn_4_159620' => 'lsa', 'Lsat_1_v5_gn_6_41301' => 'lsa', 'Lsat_1_v5_gn_6_74660' => 'lsa', 'Lsat_1_v5_gn_7_11520' => 'lsa', 'Lsat_1_v5_gn_9_67680' => 'lsa', 'Manes.04G008300' => 'mes', 'Manes.04G008400' => 'mes', 'Manes.04G026500' => 'mes', 'Manes.10G135300' => 'mes', 'Manes.11G157300' => 'mes', 'Manes.12G074000' => 'mes', 'Manes.16G006200' => 'mes', 'Manes.17G026400' => 'mes', 'Mapoly0024s0086' => 'mpo', 'Mapoly0024s0087' => 'mpo', 'Mapoly0071s0057' => 'mpo', 'Mapoly0204s0012' => 'mpo', 'MBI04_g37681_MAGBIO' => 'mbi', 'MBI05_g17779_MAGBIO' => 'mbi', 'MBI12_g31184_MAGBIO' => 'mbi', 'MBI17_g11083_MAGBIO' => 'mbi', 'MBI18_g03883_MAGBIO' => 'mbi', 'MBI18_g28940_MAGBIO' => 'mbi', 'MCO01G690' => 'mco', 'MD03G1109900' => 'mdo', 'MD03G1134800' => 'mdo', 'MD05G1348000' => 'mdo', 'MD10G1322400' => 'mdo', 'MD11G1123300' => 'mdo', 'MD11G1157600' => 'mdo', 'Medtr2g084875' => 'mtr', 'Medtr2g088130' => 'mtr', 'Medtr4g055310' => 'mtr', 'Medtr4g061070' => 'mtr', 'Medtr4g132250' => 'mtr', 'MELO3C004795.2' => 'cme', 'MELO3C004797.2' => 'cme', 'MELO3C007396.2' => 'cme', 'MELO3C019277.2' => 'cme', 'MELO3C021449.2' => 'cme', 'MELO3C025736.2' => 'cme', 'Migut.D02175' => 'egut', 'Migut.H01573' => 'egut', 'Migut.M01327' => 'egut', 'Migut.N02513' => 'egut', 'MSTRG.14638' => 'ama', 'MSTRG.18632' => 'ama', 'MSTRG.7203' => 'ama', 'Nitab4.5_0000533g0140' => 'nta', 'Nitab4.5_0000888g0150' => 'nta', 'Nitab4.5_0001453g0040' => 'nta', 'Nitab4.5_0002827g0090' => 'nta', 'Nitab4.5_0003082g0040' => 'nta', 'Nitab4.5_0007799g0040' => 'nta', 'Nitab4.5_0008983g0010' => 'nta', 'Nitab4.5_0009017g0020' => 'nta', 'Nn1g02132' => 'nnu', 'Nn1g03492' => 'nnu', 'Nn1g03493' => 'nnu', 'Nn1g03494' => 'nnu', 'Nn1g07164' => 'nnu', 'Nn1g07291' => 'nnu', 'Nn2g10655' => 'nnu', 'Nn2g11652' => 'nnu', 'Nn2g14008' => 'nnu', 'Nn3g17476' => 'nnu', 'Nn3g17477' => 'nnu', 'Nn4g22370' => 'nnu', 'Nn4g25255' => 'nnu', 'Nn5g27755' => 'nnu', 'Nn6g34260' => 'nnu', 'Nn6g35041' => 'nnu', 'Oeu005924.1' => 'oeu', 'Oeu008383.1' => 'oeu', 'Oeu014928.1' => 'oeu', 'Oeu019889.1' => 'oeu', 'Oeu022271.1' => 'oeu', 'Oeu025271.1' => 'oeu', 'Oeu036302.1' => 'oeu', 'Oeu044100.1' => 'oeu', 'Os01g0528300' => 'osa', 'Os03g0286200' => 'osa', 'Os04g0406600' => 'osa', 'Os07g0512000' => 'osa', 'Os07g0694600' => 'osa', 'Os08g0411000' => 'osa', 'Os09g0565700' => 'osa', 'Os09g0566050' => 'osa', 'Os10g0523700' => 'osa', 'Peaxi162Scf00002g00514' => 'pax', 'Peaxi162Scf00047g01817' => 'pax', 'Peaxi162Scf00114g00001' => 'pax', 'Peaxi162Scf00147g00613' => 'pax', 'Peaxi162Scf00389g00425' => 'pax', 'PGR042G1139' => 'pgr', 'PGR042G3273' => 'pgr', 'PGR102G2180' => 'pgr', 'PGR119G0234' => 'pgr', 'PGR119G0668' => 'pgr', 'PGSC0003DMG400007122' => 'stu', 'PGSC0003DMG400016478' => 'stu', 'PGSC0003DMG400025374' => 'stu', 'PGSC0003DMG400026536' => 'stu', 'Phvul.003G079600' => 'pvu', 'Phvul.005G115600' => 'pvu', 'Phvul.005G127100' => 'pvu', 'Phvul.006G149500' => 'pvu', 'Phvul.006G149600' => 'pvu', 'Phvul.011G071800' => 'pvu', 'Phvul.011G090400' => 'pvu', 'Potri.004G013400' => 'ptr', 'Potri.004G188100' => 'ptr', 'Potri.008G195500' => 'ptr', 'Potri.009G148800' => 'ptr', 'Potri.011G004700' => 'ptr', 'Pp3c17_22810' => 'ppa', 'Pp3c18_4480' => 'ppa', 'Pp3c19_13030' => 'ppa', 'Pp3c1_33620' => 'ppa', 'Pp3c2_9380' => 'ppa', 'PRCOL_00001023' => 'pco', 'Prupe.3G216300' => 'ppe', 'Prupe.4G019500' => 'ppe', 'Prupe.6G092500' => 'ppe', 'Prupe.6G119200' => 'ppe', 'Psat0s1945g0080' => 'psa', 'Psat0s4167g0040' => 'psa', 'Psat1g185800' => 'psa', 'Psat4g006440' => 'psa', 'Psat4g006480' => 'psa', 'Psat4g168120' => 'psa', 'Psat5g255680' => 'psa', 'Psat5g261760' => 'psa', 'Psat7g222120' => 'psa', 'PSO063G7252' => 'pso', 'PSO170G4778' => 'pso', 'PSO210G2249' => 'pso', 'PSO339G2411' => 'pso', 'PSO339G2457' => 'pso', 'PSO339G2854' => 'pso', 'PSO339G4288' => 'pso', 'PSO339G4615' => 'pso', 'PSO384G2796' => 'pso', 'PSO384G2940' => 'pso', 'PSO384G4227' => 'pso', 'PSO478G1425' => 'pso', 'PSO541G3863' => 'pso', 'PSO675G0507' => 'pso', 'PSO782G0338' => 'pso', 'PSO832G0644' => 'pso', 'QL01p013664' => 'qlo', 'QL01p036598' => 'qlo', 'QL05p072984' => 'qlo', 'QL08p005768' => 'qlo', 'QL08p032743' => 'qlo', 'QL93p0073_0439' => 'qlo', 'QL93p0073_0444' => 'qlo', 'RcHm_v2.0_Chr5g0002851' => 'rch', 'RcHm_v2.0_Chr5g0055201' => 'rch', 'RcHm_v2.0_Chr5g0061191' => 'rch', 'RcHm_v2.0_Chr7g0203231' => 'rch', 'Rhsim01G0208100' => 'rsi', 'Rhsim01G0208200' => 'rsi', 'Rhsim02G0106500' => 'rsi', 'Rhsim03G0107900' => 'rsi', 'Rhsim06G0163400' => 'rsi', 'Rhsim13G0105200' => 'rsi', 'Sabra04G0006300' => 'sbr', 'Sabra04G0127000' => 'sbr', 'Sabra08G0148700' => 'sbr', 'Sabra09G0117400' => 'sbr', 'SalBow1G3326' => 'sbo', 'SalBow3G3228' => 'sbo', 'SalBow6G1634' => 'sbo', 'SalBow6G3603' => 'sbo', 'SalBow6G5266' => 'sbo', 'SalBow7G2265' => 'sbo', 'SalBow8G0850' => 'sbo', 'SalBow8G2592' => 'sbo', 'Sc05g0009240' => 'sci', 'Sc12g0002300' => 'sci', 'Sc21g0000100' => 'sci', 'Sc21g0004720' => 'sci', 'Sed0002949' => 'sed', 'Sed0004114' => 'sed', 'Sed0004306' => 'sed', 'Sed0006172' => 'sed', 'Sed0008413' => 'sed', 'Sed0013809' => 'sed', 'Sed0019556' => 'sed', 'SEGI_03570' => 'sgi', 'SEGI_07859' => 'sgi', 'SEGI_15042' => 'sgi', 'SEGI_16263' => 'sgi', 'SEGI_16552' => 'sgi', 'SEGI_24331' => 'sgi', 'SEGI_27316' => 'sgi', 'SEGI_29521' => 'sgi', 'SEGI_41342' => 'sgi', 'SGA_v2.0_scaffold27G11617' => 'sas', 'SGA_v2.0_scaffold316G48428' => 'sas', 'SGA_v2.0_scaffold49G18261' => 'sas', 'SGA_v2.0_scaffold7G03831' => 'sas', 'SGA_v2.0_scaffold93G28359' => 'sas', 'SHI02210' => 'shi', 'SHI06028' => 'shi', 'SHI06321' => 'shi', 'SMO111G0012' => 'smo', 'SMO228G0080' => 'smo', 'SMO356G0756' => 'smo', 'Solyc02g080620.3' => 'sly', 'Solyc06g074530.1' => 'sly', 'Solyc11g066890.1' => 'sly', 'Solyc11g072520.3' => 'sly', 'Sopen02g025330' => 'spe', 'Sopen06g031000' => 'spe', 'Sopen09g008240' => 'spe', 'Sopen09g025210' => 'spe', 'Sopen11g026600' => 'spe', 'Sopen11g030170' => 'spe', 'Sp1g10420' => 'spa', 'Sp3g06570' => 'spa', 'Sp4g10660' => 'spa', 'Sp5g16460' => 'spa', 'Sp6g22710' => 'spa', 'TAR365G0112' => 'tar', 'TAR369G0717' => 'tar', 'TAR374G0976' => 'tar', 'TAR623G1128' => 'tar', 'TAR626G1937' => 'tar', 'TAR627G0123' => 'tar', 'TAR628G0305' => 'tar', 'TAR636G1176' => 'tar', 'TAR636G2442' => 'tar', 'THA.LOC104800556' => 'tha', 'THA.LOC104809501' => 'tha', 'THA.LOC104815126' => 'tha', 'THA.LOC104815732' => 'tha', 'THA.LOC104823528' => 'tha', 'Thecc.02G365600' => 'tca', 'Thecc.06G222300' => 'tca', 'Thecc.09G261800' => 'tca', 'Thecc.09G291400' => 'tca', 'Thhalv10003028m.g' => 'esa', 'Thhalv10007886m.g' => 'esa', 'Thhalv10016085m.g' => 'esa', 'Thhalv10016681m.g' => 'esa', 'Thhalv10020951m.g' => 'esa', 'TPR.G15598' => 'tpr', 'TPR.G29305' => 'tpr', 'TPR.G32395' => 'tpr', 'TPR.G36998' => 'tpr', 'TPR.G4227' => 'tpr', 'TWI18G1433' => 'twi', 'TWI31G0755' => 'twi', 'TWI38G0912' => 'twi', 'TWI75G1097' => 'twi', 'TWI75G1619' => 'twi', 'TWI79G1336' => 'twi', 'unitig_0.g943' => 'ugi', 'unitig_0.g944' => 'ugi', 'unitig_22.g6646' => 'ugi', 'unitig_37.g12681' => 'ugi', 'unitig_8.g3290' => 'ugi', 'vmacro03278' => 'vma', 'vmacro12197' => 'vma', 'vmacro14478' => 'vma', 'vmacro15787' => 'vma', 'vmacro15789' => 'vma', 'vmacro15790' => 'vma', 'vmacro15806' => 'vma', 'vmacro22907' => 'vma', 'vmacro22908' => 'vma', 'vmacro22909' => 'vma', 'vmacro23108' => 'vma', 'VMungo0540G0540' => 'vmu', 'VMungo0540G2468' => 'vmu', 'VMungo1080G0390' => 'vmu', 'VMungo1080G1165' => 'vmu', 'VMungo1127G0170' => 'vmu', 'VMungo1127G2099' => 'vmu', 'VMungo1215G3013' => 'vmu', 'Zm00001eb013110' => 'zma', 'Zm00001eb084260' => 'zma', 'Zm00001eb096110' => 'zma', 'Zm00001eb217510' => 'zma', 'Zm00001eb322550' => 'zma', 'Zm00001eb390770' => 'zma', 'Zm00001eb397170' => 'zma', 'Zm00001eb404610' => 'zma', 'Zm00001eb421790' => 'zma' ), 'gf_id' => 'HOM05D000911', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000911' ), 'data_identifier' => 'HOM05D000911', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000911', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27780' => 'bna', 'A03p35380' => 'bna', 'A04p21160' => 'bna', 'A05p40570' => 'bna', 'A06p26900' => 'bna', 'A08p33230' => 'bna', 'A09p65960' => 'bna', 'A10p18290' => 'bna', 'Aa31LG1G12990' => 'aar', 'Aa31LG1G2980' => 'aar', 'Aa31LG4G14320' => 'aar', 'Aa31LG7G11800' => 'aar', 'Aa31sc36G50' => 'aar', 'Aa31sc36G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3721' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5459' => 'aag', 'Actinidia03028' => 'ach', 'Actinidia03753' => 'ach', 'Actinidia04187' => 'ach', 'Actinidia05509' => 'ach', 'Actinidia24180' => 'ach', 'Actinidia26906' => 'ach', 'Actinidia37097' => 'ach', 'Actinidia38249' => 'ach', 'Ah.01g003470' => 'amhyb', 'Ah.01g004580' => 'amhyb', 'Ah.01g014850' => 'amhyb', 'Ah.01g016830' => 'amhyb', 'Ah.14g088000' => 'amhyb', 'AL1G22980' => 'aly', 'AL3G18990' => 'aly', 'AL4G22440' => 'aly', 'AL4G33180' => 'aly', 'AL5G22920' => 'aly', 'AL6G33660' => 'aly', 'AL8G20720' => 'aly', 'Aqoxy1G00935' => 'aox', 'Aqoxy1G02094' => 'aox', 'Aqoxy2G01239' => 'aox', 'Aqoxy4G01870' => 'aox', 'Aqoxy7G00450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.36ZVTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71EM27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5D6C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH3WRE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3NCM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RIM768' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YB5YRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z36GDV' => 'arhy', 'AT1G08250' => 'ath', 'AT1G11790' => 'ath', 'AT2G27820' => 'ath', 'AT3G07630' => 'ath', 'AT3G44720' => 'ath', 'AT5G22630' => 'ath', 'ATR0693G304' => 'atr', 'ATR0794G109' => 'atr', 'ATR0820G120' => 'atr', 'ATR1159G064' => 'atr', 'Atru.chr10.2239' => 'acertr', 'Atru.chr3.3371' => 'acertr', 'Atru.chr6.3202' => 'acertr', 'AUR62006499' => 'cqu', 'AUR62012718' => 'cqu', 'AUR62021938' => 'cqu', 'AUR62023932' => 'cqu', 'AUR62025034' => 'cqu', 'AUR62025035' => 'cqu', 'AUR62038307' => 'cqu', 'AUR62043466' => 'cqu', 'BcaB02g10748' => 'bca', 'BcaB03g13231' => 'bca', 'BcaB03g14689' => 'bca', 'BcaB05g22716' => 'bca', 'BcaB06g28172' => 'bca', 'BcaB08g36413' => 'bca', 'BcaC01g02186' => 'bca', 'BcaC01g04272' => 'bca', 'BcaC02g08080' => 'bca', 'BcaC02g08227' => 'bca', 'BcaC03g13901' => 'bca', 'BcaC04g19593' => 'bca', 'BcaC04g20874' => 'bca', 'BcaC05g29557' => 'bca', 'BcaC06g35505' => 'bca', 'BcaC07g41954' => 'bca', 'BcaC07g41955' => 'bca', 'BcaC07g41956' => 'bca', 'BcaC07g42519' => 'bca', 'BcaC07g42520' => 'bca', 'BcaC07g42523' => 'bca', 'BcaC07g42524' => 'bca', 'BcaC07g42525' => 'bca', 'BcaC08g47480' => 'bca', 'BcaC08g47481' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00530' => 'bna', 'BolC2t07178H' => 'bol', 'BolC3t16567H' => 'bol', 'BolC4t27234H' => 'bol', 'BolC5t29728H' => 'bol', 'BolC5t34622H' => 'bol', 'BolC6t40321H' => 'bol', 'BolC7t42028H' => 'bol', 'BolC8t49125H' => 'bol', 'BolC8t52538H' => 'bol', 'BolC8t52539H' => 'bol', 'BolC9t56681H' => 'bol', 'BolC9t58266H' => 'bol', 'BolSC21t60294H' => 'bol', 'BraA02t05670Z' => 'bra', 'BraA03t12716Z' => 'bra', 'BraA04t17685Z' => 'bra', 'BraA05t22788Z' => 'bra', 'BraA06t24032Z' => 'bra', 'BraA06t25625Z' => 'bra', 'BraA07t27930Z' => 'bra', 'BraA08t35242Z' => 'bra', 'BraA09t38609Z' => 'bra', 'BraA10t43905Z' => 'bra', 'C02p11060' => 'bna', 'C03p42990' => 'bna', 'C03p67310' => 'bna', 'C04p56990' => 'bna', 'C04p58660' => 'bna', 'C05p09890' => 'bna', 'C05p59680' => 'bna', 'C06p19830' => 'bna', 'C06p53040' => 'bna', 'C07p15230' => 'bna', 'C08p50070' => 'bna', 'C08p50090' => 'bna', 'C09p38330' => 'bna', 'C09p53940' => 'bna', 'CAN.G1014.1' => 'can', 'CAN.G644.30' => 'can', 'CAN.G84.47' => 'can', 'CAN.G919.8' => 'can', 'CANSAT54G0113' => 'cansat', 'CANSAT54G1286' => 'cansat', 'CANSAT64G1020' => 'cansat', 'CARHR008080' => 'chi', 'CARHR008090' => 'chi', 'CARHR012130' => 'chi', 'CARHR038390' => 'chi', 'CARHR082330' => 'chi', 'CARHR120520' => 'chi', 'CARHR151470' => 'chi', 'CARHR190950' => 'chi', 'Carub.0001s0760' => 'cru', 'Carub.0001s1146' => 'cru', 'Carub.0003s0721' => 'cru', 'Carub.0004s0858' => 'cru', 'Carub.0005s1040' => 'cru', 'Carub.0006s2035' => 'cru', 'Carub.0015s0005' => 'cru', 'Ca_01607_v3' => 'car', 'Ca_01677_v3' => 'car', 'Ca_06087_v3' => 'car', 'Ca_19238_v3' => 'car', 'Ca_19373_v3' => 'car', 'Ca_21079_v3' => 'car', 'CBR_g54016' => 'cbr', 'CBR_g54018' => 'cbr', 'CBR_g54020' => 'cbr', 'Cc01_g09780' => 'ccan', 'Cc01_g11680' => 'ccan', 'Cc02_g15610' => 'ccan', 'Cc05_g04350' => 'ccan', 'Cc09_g01580' => 'ccan', 'CDE01G0795' => 'cde', 'CDE02G2024' => 'cde', 'CDE02G2260' => 'cde', 'CDE02G4561' => 'cde', 'CDE05G2733' => 'cde', 'CDE05G3422' => 'cde', 'CDE06G2003' => 'cde', 'CDE08G0576' => 'cde', 'CDE09G0048' => 'cde', 'CDE11G0805' => 'cde', 'Cfa003644' => 'cfa', 'Cfa006290' => 'cfa', 'Cfa010080' => 'cfa', 'Cfa011376' => 'cfa', 'Cfa011576' => 'cfa', 'Cfa011577' => 'cfa', 'Cfa014389' => 'cfa', 'Ciclev10006044m.g' => 'ccl', 'Ciclev10006954m.g' => 'ccl', 'Ciclev10015131m.g' => 'ccl', 'Ciclev10015580m.g' => 'ccl', 'Ciclev10028359m.g' => 'ccl', 'Ciclev10028573m.g' => 'ccl', 'CiPaw.03G159300' => 'cil', 'CiPaw.04G115100' => 'cil', 'CiPaw.09G092800' => 'cil', 'CiPaw.10G071800' => 'cil', 'CiPaw.13G105800' => 'cil', 'CiPaw.13G141000' => 'cil', 'CiPaw.14G103400' => 'cil', 'ClCG01G012700' => 'cla', 'ClCG01G012720' => 'cla', 'ClCG01G021920' => 'cla', 'ClCG02G008870' => 'cla', 'ClCG02G020840' => 'cla', 'ClCG02G021930' => 'cla', 'COL.COLO4_19302' => 'col', 'COL.COLO4_25262' => 'col', 'COL.COLO4_31788' => 'col', 'Cpa.g.c34684' => 'cpa', 'Cpa.g.c36520.1' => 'cpa', 'Cpa.g.c45626' => 'cpa', 'Cpa.g.sc121.17' => 'cpa', 'Cpa.g.sc13.22' => 'cpa', 'Cpa.g.sc87.88' => 'cpa', 'Cre06.g261800' => 'cre', 'CsaV3_1G014500' => 'csa', 'CsaV3_1G014510' => 'csa', 'CsaV3_2G034880' => 'csa', 'CsaV3_6G014760' => 'csa', 'CsaV3_6G021500' => 'csa', 'CsaV3_6G048980' => 'csa', 'CSS0002511' => 'camsi', 'CSS0007556' => 'camsi', 'CSS0008532' => 'camsi', 'CSS0009709' => 'camsi', 'CSS0010486' => 'camsi', 'CSS0016768' => 'camsi', 'CSS0023512' => 'camsi', 'CSS0025341' => 'camsi', 'CSS0027999' => 'camsi', 'CSS0028944' => 'camsi', 'CSS0032292' => 'camsi', 'CSS0032464' => 'camsi', 'CSS0037153' => 'camsi', 'CSS0039256' => 'camsi', 'CSS0048392' => 'camsi', 'CSS0050458' => 'camsi', 'DCAR_004224' => 'dca', 'DCAR_006147' => 'dca', 'DCAR_006465' => 'dca', 'DCAR_008159' => 'dca', 'DCAR_012164' => 'dca', 'DCAR_019764' => 'dca', 'Dinv05418' => 'din', 'Dinv10839' => 'din', 'Dinv12521' => 'din', 'Dinv13900' => 'din', 'Dinv29426' => 'din', 'Duzib150G0263' => 'dzi', 'Duzib168G1178' => 'dzi', 'Duzib168G1924' => 'dzi', 'Duzib170G0299' => 'dzi', 'Duzib170G0813' => 'dzi', 'Duzib235G1128' => 'dzi', 'Duzib248G1060' => 'dzi', 'ECA232G1910' => 'eca', 'ECA233G4621' => 'eca', 'ECA238G1216' => 'eca', 'ECA238G1784' => 'eca', 'ECA248G1242' => 'eca', 'EL10Ac8g20071' => 'bvu', 'EL10Ac9g21086' => 'bvu', 'EL10Ac9g22407' => 'bvu', 'EL10Ac9g22412' => 'bvu', 'Eucgr.A01119' => 'egr', 'Eucgr.E04043' => 'egr', 'Eucgr.J00428' => 'egr', 'Eucgr.J00958' => 'egr', 'FAN11G3091' => 'fan', 'FAN11G3651' => 'fan', 'FAN16G2566' => 'fan', 'FAN21G3155' => 'fan', 'FAN21G3400' => 'fan', 'FAN21G3543' => 'fan', 'FAN25G0234' => 'fan', 'FAN25G1422' => 'fan', 'FAN25G3392' => 'fan', 'FvH4_3g01940' => 'fve', 'FvH4_3g29870' => 'fve', 'FvH4_3g33680' => 'fve', 'Glyma.09G004200' => 'gma', 'Glyma.11G151288' => 'gma', 'Glyma.11G189100' => 'gma', 'Glyma.12G072500' => 'gma', 'Glyma.12G085500' => 'gma', 'Glyma.12G181800' => 'gma', 'Glyma.12G193000' => 'gma', 'Glyma.13G309300' => 'gma', 'Glyma.13G319000' => 'gma', 'Glyma.17G012600' => 'gma', 'Gohir.A06G148600' => 'ghi', 'Gohir.A07G115800' => 'ghi', 'Gohir.A08G003600' => 'ghi', 'Gohir.A09G093300' => 'ghi', 'Gohir.A09G105400' => 'ghi', 'Gohir.A09G105500' => 'ghi', 'Gohir.D06G154600' => 'ghi', 'Gohir.D07G120200' => 'ghi', 'Gohir.D08G013900' => 'ghi', 'Gohir.D09G093100' => 'ghi', 'Gohir.D09G102200' => 'ghi', 'Gohir.D09G102300' => 'ghi', 'Gorai.001G129400' => 'gra', 'Gorai.004G008200' => 'gra', 'Gorai.006G109800' => 'gra', 'Gorai.006G119500' => 'gra', 'Gorai.006G121300' => 'gra', 'Gorai.010G180700' => 'gra', 'GSVIVG01012716001' => 'vvi', 'GSVIVG01025118001' => 'vvi', 'GSVIVG01030439001' => 'vvi', 'GSVIVG01031397001' => 'vvi', 'HanXRQChr01g0004201' => 'han', 'HanXRQChr02g0054941' => 'han', 'HanXRQChr05g0141811' => 'han', 'HanXRQChr07g0197751' => 'han', 'HanXRQChr11g0346691' => 'han', 'HanXRQChr13g0396971' => 'han', 'HanXRQChr14g0432951' => 'han', 'HanXRQChr14g0452001' => 'han', 'HanXRQChr15g0496681' => 'han', 'HanXRQChr17g0557491' => 'han', 'HanXRQChr17g0557501' => 'han', 'Haze_06809' => 'cav', 'Haze_12852' => 'cav', 'Haze_15850' => 'cav', 'Haze_23446' => 'cav', 'Haze_23942' => 'cav', 'Haze_23943' => 'cav', 'Hma1.2p1_0091F.1_g046450' => 'hma', 'Hma1.2p1_0128F.1_g059910' => 'hma', 'Hma1.2p1_0249F.1_g102260' => 'hma', 'Hma1.2p1_0453F.1_g156190' => 'hma', 'Hma1.2p1_0695F.1_g204380' => 'hma', 'Hma1.2p1_0749F.1_g212650' => 'hma', 'Hma1.2p1_2156F.1_g315420' => 'hma', 'Hma1.2p1_2686F.1_g326940' => 'hma', 'HPP92_006428' => 'vpl', 'HPP92_012069' => 'vpl', 'HPP92_014129' => 'vpl', 'HPP92_014133' => 'vpl', 'HPP92_017315' => 'vpl', 'HPP92_026445' => 'vpl', 'HPP92_026446' => 'vpl', 'Hund00774' => 'sun', 'Hund07682' => 'sun', 'Hund21413' => 'sun', 'Hund23462' => 'sun', 'Hund23463' => 'sun', 'Lalb_Chr03g0027911' => 'lal', 'Lalb_Chr13g0304271' => 'lal', 'Lalb_Chr19g0137471' => 'lal', 'Lalb_Chr22g0350651' => 'lal', 'Lalb_Chr24g0395151' => 'lal', 'Lj1A1231T40' => 'lonja', 'Lj1A221T48' => 'lonja', 'Lj1C924T12' => 'lonja', 'Lj2C993G6' => 'lonja', 'Lj3g0005790' => 'lja', 'Lj3g0015432' => 'lja', 'Lj3g0017722' => 'lja', 'Lj3g0018497' => 'lja', 'Lj4g0025071' => 'lja', 'Lsat_1_v5_gn_1_129680' => 'lsa', 'Lsat_1_v5_gn_2_25321' => 'lsa', 'Lsat_1_v5_gn_2_95461' => 'lsa', 'Lsat_1_v5_gn_4_159620' => 'lsa', 'Lsat_1_v5_gn_6_41301' => 'lsa', 'Lsat_1_v5_gn_6_74660' => 'lsa', 'Lsat_1_v5_gn_7_11520' => 'lsa', 'Lsat_1_v5_gn_9_67680' => 'lsa', 'Manes.04G008300' => 'mes', 'Manes.04G008400' => 'mes', 'Manes.04G026500' => 'mes', 'Manes.10G135300' => 'mes', 'Manes.11G157300' => 'mes', 'Manes.12G074000' => 'mes', 'Manes.16G006200' => 'mes', 'Manes.17G026400' => 'mes', 'Mapoly0024s0086' => 'mpo', 'Mapoly0024s0087' => 'mpo', 'Mapoly0071s0057' => 'mpo', 'Mapoly0204s0012' => 'mpo', 'MBI04_g37681_MAGBIO' => 'mbi', 'MBI05_g17779_MAGBIO' => 'mbi', 'MBI12_g31184_MAGBIO' => 'mbi', 'MBI17_g11083_MAGBIO' => 'mbi', 'MBI18_g03883_MAGBIO' => 'mbi', 'MBI18_g28940_MAGBIO' => 'mbi', 'MCO01G690' => 'mco', 'MD03G1109900' => 'mdo', 'MD03G1134800' => 'mdo', 'MD05G1348000' => 'mdo', 'MD10G1322400' => 'mdo', 'MD11G1123300' => 'mdo', 'MD11G1157600' => 'mdo', 'Medtr2g084875' => 'mtr', 'Medtr2g088130' => 'mtr', 'Medtr4g055310' => 'mtr', 'Medtr4g061070' => 'mtr', 'Medtr4g132250' => 'mtr', 'MELO3C004795.2' => 'cme', 'MELO3C004797.2' => 'cme', 'MELO3C007396.2' => 'cme', 'MELO3C019277.2' => 'cme', 'MELO3C021449.2' => 'cme', 'MELO3C025736.2' => 'cme', 'Migut.D02175' => 'egut', 'Migut.H01573' => 'egut', 'Migut.M01327' => 'egut', 'Migut.N02513' => 'egut', 'MSTRG.14638' => 'ama', 'MSTRG.18632' => 'ama', 'MSTRG.7203' => 'ama', 'Nitab4.5_0000533g0140' => 'nta', 'Nitab4.5_0000888g0150' => 'nta', 'Nitab4.5_0001453g0040' => 'nta', 'Nitab4.5_0002827g0090' => 'nta', 'Nitab4.5_0003082g0040' => 'nta', 'Nitab4.5_0007799g0040' => 'nta', 'Nitab4.5_0008983g0010' => 'nta', 'Nitab4.5_0009017g0020' => 'nta', 'Nn1g02132' => 'nnu', 'Nn1g03492' => 'nnu', 'Nn1g03493' => 'nnu', 'Nn1g03494' => 'nnu', 'Nn1g07164' => 'nnu', 'Nn1g07291' => 'nnu', 'Nn2g10655' => 'nnu', 'Nn2g11652' => 'nnu', 'Nn2g14008' => 'nnu', 'Nn3g17476' => 'nnu', 'Nn3g17477' => 'nnu', 'Nn4g22370' => 'nnu', 'Nn4g25255' => 'nnu', 'Nn5g27755' => 'nnu', 'Nn6g34260' => 'nnu', 'Nn6g35041' => 'nnu', 'Oeu005924.1' => 'oeu', 'Oeu008383.1' => 'oeu', 'Oeu014928.1' => 'oeu', 'Oeu019889.1' => 'oeu', 'Oeu022271.1' => 'oeu', 'Oeu025271.1' => 'oeu', 'Oeu036302.1' => 'oeu', 'Oeu044100.1' => 'oeu', 'Os01g0528300' => 'osa', 'Os03g0286200' => 'osa', 'Os04g0406600' => 'osa', 'Os07g0512000' => 'osa', 'Os07g0694600' => 'osa', 'Os08g0411000' => 'osa', 'Os09g0565700' => 'osa', 'Os09g0566050' => 'osa', 'Os10g0523700' => 'osa', 'Peaxi162Scf00002g00514' => 'pax', 'Peaxi162Scf00047g01817' => 'pax', 'Peaxi162Scf00114g00001' => 'pax', 'Peaxi162Scf00147g00613' => 'pax', 'Peaxi162Scf00389g00425' => 'pax', 'PGR042G1139' => 'pgr', 'PGR042G3273' => 'pgr', 'PGR102G2180' => 'pgr', 'PGR119G0234' => 'pgr', 'PGR119G0668' => 'pgr', 'PGSC0003DMG400007122' => 'stu', 'PGSC0003DMG400016478' => 'stu', 'PGSC0003DMG400025374' => 'stu', 'PGSC0003DMG400026536' => 'stu', 'Phvul.003G079600' => 'pvu', 'Phvul.005G115600' => 'pvu', 'Phvul.005G127100' => 'pvu', 'Phvul.006G149500' => 'pvu', 'Phvul.006G149600' => 'pvu', 'Phvul.011G071800' => 'pvu', 'Phvul.011G090400' => 'pvu', 'Potri.004G013400' => 'ptr', 'Potri.004G188100' => 'ptr', 'Potri.008G195500' => 'ptr', 'Potri.009G148800' => 'ptr', 'Potri.011G004700' => 'ptr', 'Pp3c17_22810' => 'ppa', 'Pp3c18_4480' => 'ppa', 'Pp3c19_13030' => 'ppa', 'Pp3c1_33620' => 'ppa', 'Pp3c2_9380' => 'ppa', 'PRCOL_00001023' => 'pco', 'Prupe.3G216300' => 'ppe', 'Prupe.4G019500' => 'ppe', 'Prupe.6G092500' => 'ppe', 'Prupe.6G119200' => 'ppe', 'Psat0s1945g0080' => 'psa', 'Psat0s4167g0040' => 'psa', 'Psat1g185800' => 'psa', 'Psat4g006440' => 'psa', 'Psat4g006480' => 'psa', 'Psat4g168120' => 'psa', 'Psat5g255680' => 'psa', 'Psat5g261760' => 'psa', 'Psat7g222120' => 'psa', 'PSO063G7252' => 'pso', 'PSO170G4778' => 'pso', 'PSO210G2249' => 'pso', 'PSO339G2411' => 'pso', 'PSO339G2457' => 'pso', 'PSO339G2854' => 'pso', 'PSO339G4288' => 'pso', 'PSO339G4615' => 'pso', 'PSO384G2796' => 'pso', 'PSO384G2940' => 'pso', 'PSO384G4227' => 'pso', 'PSO478G1425' => 'pso', 'PSO541G3863' => 'pso', 'PSO675G0507' => 'pso', 'PSO782G0338' => 'pso', 'PSO832G0644' => 'pso', 'QL01p013664' => 'qlo', 'QL01p036598' => 'qlo', 'QL05p072984' => 'qlo', 'QL08p005768' => 'qlo', 'QL08p032743' => 'qlo', 'QL93p0073_0439' => 'qlo', 'QL93p0073_0444' => 'qlo', 'RcHm_v2.0_Chr5g0002851' => 'rch', 'RcHm_v2.0_Chr5g0055201' => 'rch', 'RcHm_v2.0_Chr5g0061191' => 'rch', 'RcHm_v2.0_Chr7g0203231' => 'rch', 'Rhsim01G0208100' => 'rsi', 'Rhsim01G0208200' => 'rsi', 'Rhsim02G0106500' => 'rsi', 'Rhsim03G0107900' => 'rsi', 'Rhsim06G0163400' => 'rsi', 'Rhsim13G0105200' => 'rsi', 'Sabra04G0006300' => 'sbr', 'Sabra04G0127000' => 'sbr', 'Sabra08G0148700' => 'sbr', 'Sabra09G0117400' => 'sbr', 'SalBow1G3326' => 'sbo', 'SalBow3G3228' => 'sbo', 'SalBow6G1634' => 'sbo', 'SalBow6G3603' => 'sbo', 'SalBow6G5266' => 'sbo', 'SalBow7G2265' => 'sbo', 'SalBow8G0850' => 'sbo', 'SalBow8G2592' => 'sbo', 'Sc05g0009240' => 'sci', 'Sc12g0002300' => 'sci', 'Sc21g0000100' => 'sci', 'Sc21g0004720' => 'sci', 'Sed0002949' => 'sed', 'Sed0004114' => 'sed', 'Sed0004306' => 'sed', 'Sed0006172' => 'sed', 'Sed0008413' => 'sed', 'Sed0013809' => 'sed', 'Sed0019556' => 'sed', 'SEGI_03570' => 'sgi', 'SEGI_07859' => 'sgi', 'SEGI_15042' => 'sgi', 'SEGI_16263' => 'sgi', 'SEGI_16552' => 'sgi', 'SEGI_24331' => 'sgi', 'SEGI_27316' => 'sgi', 'SEGI_29521' => 'sgi', 'SEGI_41342' => 'sgi', 'SGA_v2.0_scaffold27G11617' => 'sas', 'SGA_v2.0_scaffold316G48428' => 'sas', 'SGA_v2.0_scaffold49G18261' => 'sas', 'SGA_v2.0_scaffold7G03831' => 'sas', 'SGA_v2.0_scaffold93G28359' => 'sas', 'SHI02210' => 'shi', 'SHI06028' => 'shi', 'SHI06321' => 'shi', 'SMO111G0012' => 'smo', 'SMO228G0080' => 'smo', 'SMO356G0756' => 'smo', 'Solyc02g080620.3' => 'sly', 'Solyc06g074530.1' => 'sly', 'Solyc11g066890.1' => 'sly', 'Solyc11g072520.3' => 'sly', 'Sopen02g025330' => 'spe', 'Sopen06g031000' => 'spe', 'Sopen09g008240' => 'spe', 'Sopen09g025210' => 'spe', 'Sopen11g026600' => 'spe', 'Sopen11g030170' => 'spe', 'Sp1g10420' => 'spa', 'Sp3g06570' => 'spa', 'Sp4g10660' => 'spa', 'Sp5g16460' => 'spa', 'Sp6g22710' => 'spa', 'TAR365G0112' => 'tar', 'TAR369G0717' => 'tar', 'TAR374G0976' => 'tar', 'TAR623G1128' => 'tar', 'TAR626G1937' => 'tar', 'TAR627G0123' => 'tar', 'TAR628G0305' => 'tar', 'TAR636G1176' => 'tar', 'TAR636G2442' => 'tar', 'THA.LOC104800556' => 'tha', 'THA.LOC104809501' => 'tha', 'THA.LOC104815126' => 'tha', 'THA.LOC104815732' => 'tha', 'THA.LOC104823528' => 'tha', 'Thecc.02G365600' => 'tca', 'Thecc.06G222300' => 'tca', 'Thecc.09G261800' => 'tca', 'Thecc.09G291400' => 'tca', 'Thhalv10003028m.g' => 'esa', 'Thhalv10007886m.g' => 'esa', 'Thhalv10016085m.g' => 'esa', 'Thhalv10016681m.g' => 'esa', 'Thhalv10020951m.g' => 'esa', 'TPR.G15598' => 'tpr', 'TPR.G29305' => 'tpr', 'TPR.G32395' => 'tpr', 'TPR.G36998' => 'tpr', 'TPR.G4227' => 'tpr', 'TWI18G1433' => 'twi', 'TWI31G0755' => 'twi', 'TWI38G0912' => 'twi', 'TWI75G1097' => 'twi', 'TWI75G1619' => 'twi', 'TWI79G1336' => 'twi', 'unitig_0.g943' => 'ugi', 'unitig_0.g944' => 'ugi', 'unitig_22.g6646' => 'ugi', 'unitig_37.g12681' => 'ugi', 'unitig_8.g3290' => 'ugi', 'vmacro03278' => 'vma', 'vmacro12197' => 'vma', 'vmacro14478' => 'vma', 'vmacro15787' => 'vma', 'vmacro15789' => 'vma', 'vmacro15790' => 'vma', 'vmacro15806' => 'vma', 'vmacro22907' => 'vma', 'vmacro22908' => 'vma', 'vmacro22909' => 'vma', 'vmacro23108' => 'vma', 'VMungo0540G0540' => 'vmu', 'VMungo0540G2468' => 'vmu', 'VMungo1080G0390' => 'vmu', 'VMungo1080G1165' => 'vmu', 'VMungo1127G0170' => 'vmu', 'VMungo1127G2099' => 'vmu', 'VMungo1215G3013' => 'vmu', 'Zm00001eb013110' => 'zma', 'Zm00001eb084260' => 'zma', 'Zm00001eb096110' => 'zma', 'Zm00001eb217510' => 'zma', 'Zm00001eb322550' => 'zma', 'Zm00001eb390770' => 'zma', 'Zm00001eb397170' => 'zma', 'Zm00001eb404610' => 'zma', 'Zm00001eb421790' => 'zma' ) $gf_id = 'HOM05D000911' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000911' ) $data_identifier = 'HOM05D000911' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 16, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 5, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 6, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 8, 'nnu' => (int) 16, 'oeu' => (int) 8, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 5, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 16, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421790' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000911', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27780' => 'bna', 'A03p35380' => 'bna', 'A04p21160' => 'bna', 'A05p40570' => 'bna', 'A06p26900' => 'bna', 'A08p33230' => 'bna', 'A09p65960' => 'bna', 'A10p18290' => 'bna', 'Aa31LG1G12990' => 'aar', 'Aa31LG1G2980' => 'aar', 'Aa31LG4G14320' => 'aar', 'Aa31LG7G11800' => 'aar', 'Aa31sc36G50' => 'aar', 'Aa31sc36G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3721' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5459' => 'aag', 'Actinidia03028' => 'ach', 'Actinidia03753' => 'ach', 'Actinidia04187' => 'ach', 'Actinidia05509' => 'ach', 'Actinidia24180' => 'ach', 'Actinidia26906' => 'ach', 'Actinidia37097' => 'ach', 'Actinidia38249' => 'ach', 'Ah.01g003470' => 'amhyb', 'Ah.01g004580' => 'amhyb', 'Ah.01g014850' => 'amhyb', 'Ah.01g016830' => 'amhyb', 'Ah.14g088000' => 'amhyb', 'AL1G22980' => 'aly', 'AL3G18990' => 'aly', 'AL4G22440' => 'aly', 'AL4G33180' => 'aly', 'AL5G22920' => 'aly', 'AL6G33660' => 'aly', 'AL8G20720' => 'aly', 'Aqoxy1G00935' => 'aox', 'Aqoxy1G02094' => 'aox', 'Aqoxy2G01239' => 'aox', 'Aqoxy4G01870' => 'aox', 'Aqoxy7G00450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.36ZVTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71EM27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5D6C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH3WRE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3NCM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RIM768' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YB5YRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z36GDV' => 'arhy', 'AT1G08250' => 'ath', 'AT1G11790' => 'ath', 'AT2G27820' => 'ath', 'AT3G07630' => 'ath', 'AT3G44720' => 'ath', 'AT5G22630' => 'ath', 'ATR0693G304' => 'atr', 'ATR0794G109' => 'atr', 'ATR0820G120' => 'atr', 'ATR1159G064' => 'atr', 'Atru.chr10.2239' => 'acertr', 'Atru.chr3.3371' => 'acertr', 'Atru.chr6.3202' => 'acertr', 'AUR62006499' => 'cqu', 'AUR62012718' => 'cqu', 'AUR62021938' => 'cqu', 'AUR62023932' => 'cqu', 'AUR62025034' => 'cqu', 'AUR62025035' => 'cqu', 'AUR62038307' => 'cqu', 'AUR62043466' => 'cqu', 'BcaB02g10748' => 'bca', 'BcaB03g13231' => 'bca', 'BcaB03g14689' => 'bca', 'BcaB05g22716' => 'bca', 'BcaB06g28172' => 'bca', 'BcaB08g36413' => 'bca', 'BcaC01g02186' => 'bca', 'BcaC01g04272' => 'bca', 'BcaC02g08080' => 'bca', 'BcaC02g08227' => 'bca', 'BcaC03g13901' => 'bca', 'BcaC04g19593' => 'bca', 'BcaC04g20874' => 'bca', 'BcaC05g29557' => 'bca', 'BcaC06g35505' => 'bca', 'BcaC07g41954' => 'bca', 'BcaC07g41955' => 'bca', 'BcaC07g41956' => 'bca', 'BcaC07g42519' => 'bca', 'BcaC07g42520' => 'bca', 'BcaC07g42523' => 'bca', 'BcaC07g42524' => 'bca', 'BcaC07g42525' => 'bca', 'BcaC08g47480' => 'bca', 'BcaC08g47481' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00530' => 'bna', 'BolC2t07178H' => 'bol', 'BolC3t16567H' => 'bol', 'BolC4t27234H' => 'bol', 'BolC5t29728H' => 'bol', 'BolC5t34622H' => 'bol', 'BolC6t40321H' => 'bol', 'BolC7t42028H' => 'bol', 'BolC8t49125H' => 'bol', 'BolC8t52538H' => 'bol', 'BolC8t52539H' => 'bol', 'BolC9t56681H' => 'bol', 'BolC9t58266H' => 'bol', 'BolSC21t60294H' => 'bol', 'BraA02t05670Z' => 'bra', 'BraA03t12716Z' => 'bra', 'BraA04t17685Z' => 'bra', 'BraA05t22788Z' => 'bra', 'BraA06t24032Z' => 'bra', 'BraA06t25625Z' => 'bra', 'BraA07t27930Z' => 'bra', 'BraA08t35242Z' => 'bra', 'BraA09t38609Z' => 'bra', 'BraA10t43905Z' => 'bra', 'C02p11060' => 'bna', 'C03p42990' => 'bna', 'C03p67310' => 'bna', 'C04p56990' => 'bna', 'C04p58660' => 'bna', 'C05p09890' => 'bna', 'C05p59680' => 'bna', 'C06p19830' => 'bna', 'C06p53040' => 'bna', 'C07p15230' => 'bna', 'C08p50070' => 'bna', 'C08p50090' => 'bna', 'C09p38330' => 'bna', 'C09p53940' => 'bna', 'CAN.G1014.1' => 'can', 'CAN.G644.30' => 'can', 'CAN.G84.47' => 'can', 'CAN.G919.8' => 'can', 'CANSAT54G0113' => 'cansat', 'CANSAT54G1286' => 'cansat', 'CANSAT64G1020' => 'cansat', 'CARHR008080' => 'chi', 'CARHR008090' => 'chi', 'CARHR012130' => 'chi', 'CARHR038390' => 'chi', 'CARHR082330' => 'chi', 'CARHR120520' => 'chi', 'CARHR151470' => 'chi', 'CARHR190950' => 'chi', 'Carub.0001s0760' => 'cru', 'Carub.0001s1146' => 'cru', 'Carub.0003s0721' => 'cru', 'Carub.0004s0858' => 'cru', 'Carub.0005s1040' => 'cru', 'Carub.0006s2035' => 'cru', 'Carub.0015s0005' => 'cru', 'Ca_01607_v3' => 'car', 'Ca_01677_v3' => 'car', 'Ca_06087_v3' => 'car', 'Ca_19238_v3' => 'car', 'Ca_19373_v3' => 'car', 'Ca_21079_v3' => 'car', 'CBR_g54016' => 'cbr', 'CBR_g54018' => 'cbr', 'CBR_g54020' => 'cbr', 'Cc01_g09780' => 'ccan', 'Cc01_g11680' => 'ccan', 'Cc02_g15610' => 'ccan', 'Cc05_g04350' => 'ccan', 'Cc09_g01580' => 'ccan', 'CDE01G0795' => 'cde', 'CDE02G2024' => 'cde', 'CDE02G2260' => 'cde', 'CDE02G4561' => 'cde', 'CDE05G2733' => 'cde', 'CDE05G3422' => 'cde', 'CDE06G2003' => 'cde', 'CDE08G0576' => 'cde', 'CDE09G0048' => 'cde', 'CDE11G0805' => 'cde', 'Cfa003644' => 'cfa', 'Cfa006290' => 'cfa', 'Cfa010080' => 'cfa', 'Cfa011376' => 'cfa', 'Cfa011576' => 'cfa', 'Cfa011577' => 'cfa', 'Cfa014389' => 'cfa', 'Ciclev10006044m.g' => 'ccl', 'Ciclev10006954m.g' => 'ccl', 'Ciclev10015131m.g' => 'ccl', 'Ciclev10015580m.g' => 'ccl', 'Ciclev10028359m.g' => 'ccl', 'Ciclev10028573m.g' => 'ccl', 'CiPaw.03G159300' => 'cil', 'CiPaw.04G115100' => 'cil', 'CiPaw.09G092800' => 'cil', 'CiPaw.10G071800' => 'cil', 'CiPaw.13G105800' => 'cil', 'CiPaw.13G141000' => 'cil', 'CiPaw.14G103400' => 'cil', 'ClCG01G012700' => 'cla', 'ClCG01G012720' => 'cla', 'ClCG01G021920' => 'cla', 'ClCG02G008870' => 'cla', 'ClCG02G020840' => 'cla', 'ClCG02G021930' => 'cla', 'COL.COLO4_19302' => 'col', 'COL.COLO4_25262' => 'col', 'COL.COLO4_31788' => 'col', 'Cpa.g.c34684' => 'cpa', 'Cpa.g.c36520.1' => 'cpa', 'Cpa.g.c45626' => 'cpa', 'Cpa.g.sc121.17' => 'cpa', 'Cpa.g.sc13.22' => 'cpa', 'Cpa.g.sc87.88' => 'cpa', 'Cre06.g261800' => 'cre', 'CsaV3_1G014500' => 'csa', 'CsaV3_1G014510' => 'csa', 'CsaV3_2G034880' => 'csa', 'CsaV3_6G014760' => 'csa', 'CsaV3_6G021500' => 'csa', 'CsaV3_6G048980' => 'csa', 'CSS0002511' => 'camsi', 'CSS0007556' => 'camsi', 'CSS0008532' => 'camsi', 'CSS0009709' => 'camsi', 'CSS0010486' => 'camsi', 'CSS0016768' => 'camsi', 'CSS0023512' => 'camsi', 'CSS0025341' => 'camsi', 'CSS0027999' => 'camsi', 'CSS0028944' => 'camsi', 'CSS0032292' => 'camsi', 'CSS0032464' => 'camsi', 'CSS0037153' => 'camsi', 'CSS0039256' => 'camsi', 'CSS0048392' => 'camsi', 'CSS0050458' => 'camsi', 'DCAR_004224' => 'dca', 'DCAR_006147' => 'dca', 'DCAR_006465' => 'dca', 'DCAR_008159' => 'dca', 'DCAR_012164' => 'dca', 'DCAR_019764' => 'dca', 'Dinv05418' => 'din', 'Dinv10839' => 'din', 'Dinv12521' => 'din', 'Dinv13900' => 'din', 'Dinv29426' => 'din', 'Duzib150G0263' => 'dzi', 'Duzib168G1178' => 'dzi', 'Duzib168G1924' => 'dzi', 'Duzib170G0299' => 'dzi', 'Duzib170G0813' => 'dzi', 'Duzib235G1128' => 'dzi', 'Duzib248G1060' => 'dzi', 'ECA232G1910' => 'eca', 'ECA233G4621' => 'eca', 'ECA238G1216' => 'eca', 'ECA238G1784' => 'eca', 'ECA248G1242' => 'eca', 'EL10Ac8g20071' => 'bvu', 'EL10Ac9g21086' => 'bvu', 'EL10Ac9g22407' => 'bvu', 'EL10Ac9g22412' => 'bvu', 'Eucgr.A01119' => 'egr', 'Eucgr.E04043' => 'egr', 'Eucgr.J00428' => 'egr', 'Eucgr.J00958' => 'egr', 'FAN11G3091' => 'fan', 'FAN11G3651' => 'fan', 'FAN16G2566' => 'fan', 'FAN21G3155' => 'fan', 'FAN21G3400' => 'fan', 'FAN21G3543' => 'fan', 'FAN25G0234' => 'fan', 'FAN25G1422' => 'fan', 'FAN25G3392' => 'fan', 'FvH4_3g01940' => 'fve', 'FvH4_3g29870' => 'fve', 'FvH4_3g33680' => 'fve', 'Glyma.09G004200' => 'gma', 'Glyma.11G151288' => 'gma', 'Glyma.11G189100' => 'gma', 'Glyma.12G072500' => 'gma', 'Glyma.12G085500' => 'gma', 'Glyma.12G181800' => 'gma', 'Glyma.12G193000' => 'gma', 'Glyma.13G309300' => 'gma', 'Glyma.13G319000' => 'gma', 'Glyma.17G012600' => 'gma', 'Gohir.A06G148600' => 'ghi', 'Gohir.A07G115800' => 'ghi', 'Gohir.A08G003600' => 'ghi', 'Gohir.A09G093300' => 'ghi', 'Gohir.A09G105400' => 'ghi', 'Gohir.A09G105500' => 'ghi', 'Gohir.D06G154600' => 'ghi', 'Gohir.D07G120200' => 'ghi', 'Gohir.D08G013900' => 'ghi', 'Gohir.D09G093100' => 'ghi', 'Gohir.D09G102200' => 'ghi', 'Gohir.D09G102300' => 'ghi', 'Gorai.001G129400' => 'gra', 'Gorai.004G008200' => 'gra', 'Gorai.006G109800' => 'gra', 'Gorai.006G119500' => 'gra', 'Gorai.006G121300' => 'gra', 'Gorai.010G180700' => 'gra', 'GSVIVG01012716001' => 'vvi', 'GSVIVG01025118001' => 'vvi', 'GSVIVG01030439001' => 'vvi', 'GSVIVG01031397001' => 'vvi', 'HanXRQChr01g0004201' => 'han', 'HanXRQChr02g0054941' => 'han', 'HanXRQChr05g0141811' => 'han', 'HanXRQChr07g0197751' => 'han', 'HanXRQChr11g0346691' => 'han', 'HanXRQChr13g0396971' => 'han', 'HanXRQChr14g0432951' => 'han', 'HanXRQChr14g0452001' => 'han', 'HanXRQChr15g0496681' => 'han', 'HanXRQChr17g0557491' => 'han', 'HanXRQChr17g0557501' => 'han', 'Haze_06809' => 'cav', 'Haze_12852' => 'cav', 'Haze_15850' => 'cav', 'Haze_23446' => 'cav', 'Haze_23942' => 'cav', 'Haze_23943' => 'cav', 'Hma1.2p1_0091F.1_g046450' => 'hma', 'Hma1.2p1_0128F.1_g059910' => 'hma', 'Hma1.2p1_0249F.1_g102260' => 'hma', 'Hma1.2p1_0453F.1_g156190' => 'hma', 'Hma1.2p1_0695F.1_g204380' => 'hma', 'Hma1.2p1_0749F.1_g212650' => 'hma', 'Hma1.2p1_2156F.1_g315420' => 'hma', 'Hma1.2p1_2686F.1_g326940' => 'hma', 'HPP92_006428' => 'vpl', 'HPP92_012069' => 'vpl', 'HPP92_014129' => 'vpl', 'HPP92_014133' => 'vpl', 'HPP92_017315' => 'vpl', 'HPP92_026445' => 'vpl', 'HPP92_026446' => 'vpl', 'Hund00774' => 'sun', 'Hund07682' => 'sun', 'Hund21413' => 'sun', 'Hund23462' => 'sun', 'Hund23463' => 'sun', 'Lalb_Chr03g0027911' => 'lal', 'Lalb_Chr13g0304271' => 'lal', 'Lalb_Chr19g0137471' => 'lal', 'Lalb_Chr22g0350651' => 'lal', 'Lalb_Chr24g0395151' => 'lal', 'Lj1A1231T40' => 'lonja', 'Lj1A221T48' => 'lonja', 'Lj1C924T12' => 'lonja', 'Lj2C993G6' => 'lonja', 'Lj3g0005790' => 'lja', 'Lj3g0015432' => 'lja', 'Lj3g0017722' => 'lja', 'Lj3g0018497' => 'lja', 'Lj4g0025071' => 'lja', 'Lsat_1_v5_gn_1_129680' => 'lsa', 'Lsat_1_v5_gn_2_25321' => 'lsa', 'Lsat_1_v5_gn_2_95461' => 'lsa', 'Lsat_1_v5_gn_4_159620' => 'lsa', 'Lsat_1_v5_gn_6_41301' => 'lsa', 'Lsat_1_v5_gn_6_74660' => 'lsa', 'Lsat_1_v5_gn_7_11520' => 'lsa', 'Lsat_1_v5_gn_9_67680' => 'lsa', 'Manes.04G008300' => 'mes', 'Manes.04G008400' => 'mes', 'Manes.04G026500' => 'mes', 'Manes.10G135300' => 'mes', 'Manes.11G157300' => 'mes', 'Manes.12G074000' => 'mes', 'Manes.16G006200' => 'mes', 'Manes.17G026400' => 'mes', 'Mapoly0024s0086' => 'mpo', 'Mapoly0024s0087' => 'mpo', 'Mapoly0071s0057' => 'mpo', 'Mapoly0204s0012' => 'mpo', 'MBI04_g37681_MAGBIO' => 'mbi', 'MBI05_g17779_MAGBIO' => 'mbi', 'MBI12_g31184_MAGBIO' => 'mbi', 'MBI17_g11083_MAGBIO' => 'mbi', 'MBI18_g03883_MAGBIO' => 'mbi', 'MBI18_g28940_MAGBIO' => 'mbi', 'MCO01G690' => 'mco', 'MD03G1109900' => 'mdo', 'MD03G1134800' => 'mdo', 'MD05G1348000' => 'mdo', 'MD10G1322400' => 'mdo', 'MD11G1123300' => 'mdo', 'MD11G1157600' => 'mdo', 'Medtr2g084875' => 'mtr', 'Medtr2g088130' => 'mtr', 'Medtr4g055310' => 'mtr', 'Medtr4g061070' => 'mtr', 'Medtr4g132250' => 'mtr', 'MELO3C004795.2' => 'cme', 'MELO3C004797.2' => 'cme', 'MELO3C007396.2' => 'cme', 'MELO3C019277.2' => 'cme', 'MELO3C021449.2' => 'cme', 'MELO3C025736.2' => 'cme', 'Migut.D02175' => 'egut', 'Migut.H01573' => 'egut', 'Migut.M01327' => 'egut', 'Migut.N02513' => 'egut', 'MSTRG.14638' => 'ama', 'MSTRG.18632' => 'ama', 'MSTRG.7203' => 'ama', 'Nitab4.5_0000533g0140' => 'nta', 'Nitab4.5_0000888g0150' => 'nta', 'Nitab4.5_0001453g0040' => 'nta', 'Nitab4.5_0002827g0090' => 'nta', 'Nitab4.5_0003082g0040' => 'nta', 'Nitab4.5_0007799g0040' => 'nta', 'Nitab4.5_0008983g0010' => 'nta', 'Nitab4.5_0009017g0020' => 'nta', 'Nn1g02132' => 'nnu', 'Nn1g03492' => 'nnu', 'Nn1g03493' => 'nnu', 'Nn1g03494' => 'nnu', 'Nn1g07164' => 'nnu', 'Nn1g07291' => 'nnu', 'Nn2g10655' => 'nnu', 'Nn2g11652' => 'nnu', 'Nn2g14008' => 'nnu', 'Nn3g17476' => 'nnu', 'Nn3g17477' => 'nnu', 'Nn4g22370' => 'nnu', 'Nn4g25255' => 'nnu', 'Nn5g27755' => 'nnu', 'Nn6g34260' => 'nnu', 'Nn6g35041' => 'nnu', 'Oeu005924.1' => 'oeu', 'Oeu008383.1' => 'oeu', 'Oeu014928.1' => 'oeu', 'Oeu019889.1' => 'oeu', 'Oeu022271.1' => 'oeu', 'Oeu025271.1' => 'oeu', 'Oeu036302.1' => 'oeu', 'Oeu044100.1' => 'oeu', 'Os01g0528300' => 'osa', 'Os03g0286200' => 'osa', 'Os04g0406600' => 'osa', 'Os07g0512000' => 'osa', 'Os07g0694600' => 'osa', 'Os08g0411000' => 'osa', 'Os09g0565700' => 'osa', 'Os09g0566050' => 'osa', 'Os10g0523700' => 'osa', 'Peaxi162Scf00002g00514' => 'pax', 'Peaxi162Scf00047g01817' => 'pax', 'Peaxi162Scf00114g00001' => 'pax', 'Peaxi162Scf00147g00613' => 'pax', 'Peaxi162Scf00389g00425' => 'pax', 'PGR042G1139' => 'pgr', 'PGR042G3273' => 'pgr', 'PGR102G2180' => 'pgr', 'PGR119G0234' => 'pgr', 'PGR119G0668' => 'pgr', 'PGSC0003DMG400007122' => 'stu', 'PGSC0003DMG400016478' => 'stu', 'PGSC0003DMG400025374' => 'stu', 'PGSC0003DMG400026536' => 'stu', 'Phvul.003G079600' => 'pvu', 'Phvul.005G115600' => 'pvu', 'Phvul.005G127100' => 'pvu', 'Phvul.006G149500' => 'pvu', 'Phvul.006G149600' => 'pvu', 'Phvul.011G071800' => 'pvu', 'Phvul.011G090400' => 'pvu', 'Potri.004G013400' => 'ptr', 'Potri.004G188100' => 'ptr', 'Potri.008G195500' => 'ptr', 'Potri.009G148800' => 'ptr', 'Potri.011G004700' => 'ptr', 'Pp3c17_22810' => 'ppa', 'Pp3c18_4480' => 'ppa', 'Pp3c19_13030' => 'ppa', 'Pp3c1_33620' => 'ppa', 'Pp3c2_9380' => 'ppa', 'PRCOL_00001023' => 'pco', 'Prupe.3G216300' => 'ppe', 'Prupe.4G019500' => 'ppe', 'Prupe.6G092500' => 'ppe', 'Prupe.6G119200' => 'ppe', 'Psat0s1945g0080' => 'psa', 'Psat0s4167g0040' => 'psa', 'Psat1g185800' => 'psa', 'Psat4g006440' => 'psa', 'Psat4g006480' => 'psa', 'Psat4g168120' => 'psa', 'Psat5g255680' => 'psa', 'Psat5g261760' => 'psa', 'Psat7g222120' => 'psa', 'PSO063G7252' => 'pso', 'PSO170G4778' => 'pso', 'PSO210G2249' => 'pso', 'PSO339G2411' => 'pso', 'PSO339G2457' => 'pso', 'PSO339G2854' => 'pso', 'PSO339G4288' => 'pso', 'PSO339G4615' => 'pso', 'PSO384G2796' => 'pso', 'PSO384G2940' => 'pso', 'PSO384G4227' => 'pso', 'PSO478G1425' => 'pso', 'PSO541G3863' => 'pso', 'PSO675G0507' => 'pso', 'PSO782G0338' => 'pso', 'PSO832G0644' => 'pso', 'QL01p013664' => 'qlo', 'QL01p036598' => 'qlo', 'QL05p072984' => 'qlo', 'QL08p005768' => 'qlo', 'QL08p032743' => 'qlo', 'QL93p0073_0439' => 'qlo', 'QL93p0073_0444' => 'qlo', 'RcHm_v2.0_Chr5g0002851' => 'rch', 'RcHm_v2.0_Chr5g0055201' => 'rch', 'RcHm_v2.0_Chr5g0061191' => 'rch', 'RcHm_v2.0_Chr7g0203231' => 'rch', 'Rhsim01G0208100' => 'rsi', 'Rhsim01G0208200' => 'rsi', 'Rhsim02G0106500' => 'rsi', 'Rhsim03G0107900' => 'rsi', 'Rhsim06G0163400' => 'rsi', 'Rhsim13G0105200' => 'rsi', 'Sabra04G0006300' => 'sbr', 'Sabra04G0127000' => 'sbr', 'Sabra08G0148700' => 'sbr', 'Sabra09G0117400' => 'sbr', 'SalBow1G3326' => 'sbo', 'SalBow3G3228' => 'sbo', 'SalBow6G1634' => 'sbo', 'SalBow6G3603' => 'sbo', 'SalBow6G5266' => 'sbo', 'SalBow7G2265' => 'sbo', 'SalBow8G0850' => 'sbo', 'SalBow8G2592' => 'sbo', 'Sc05g0009240' => 'sci', 'Sc12g0002300' => 'sci', 'Sc21g0000100' => 'sci', 'Sc21g0004720' => 'sci', 'Sed0002949' => 'sed', 'Sed0004114' => 'sed', 'Sed0004306' => 'sed', 'Sed0006172' => 'sed', 'Sed0008413' => 'sed', 'Sed0013809' => 'sed', 'Sed0019556' => 'sed', 'SEGI_03570' => 'sgi', 'SEGI_07859' => 'sgi', 'SEGI_15042' => 'sgi', 'SEGI_16263' => 'sgi', 'SEGI_16552' => 'sgi', 'SEGI_24331' => 'sgi', 'SEGI_27316' => 'sgi', 'SEGI_29521' => 'sgi', 'SEGI_41342' => 'sgi', 'SGA_v2.0_scaffold27G11617' => 'sas', 'SGA_v2.0_scaffold316G48428' => 'sas', 'SGA_v2.0_scaffold49G18261' => 'sas', 'SGA_v2.0_scaffold7G03831' => 'sas', 'SGA_v2.0_scaffold93G28359' => 'sas', 'SHI02210' => 'shi', 'SHI06028' => 'shi', 'SHI06321' => 'shi', 'SMO111G0012' => 'smo', 'SMO228G0080' => 'smo', 'SMO356G0756' => 'smo', 'Solyc02g080620.3' => 'sly', 'Solyc06g074530.1' => 'sly', 'Solyc11g066890.1' => 'sly', 'Solyc11g072520.3' => 'sly', 'Sopen02g025330' => 'spe', 'Sopen06g031000' => 'spe', 'Sopen09g008240' => 'spe', 'Sopen09g025210' => 'spe', 'Sopen11g026600' => 'spe', 'Sopen11g030170' => 'spe', 'Sp1g10420' => 'spa', 'Sp3g06570' => 'spa', 'Sp4g10660' => 'spa', 'Sp5g16460' => 'spa', 'Sp6g22710' => 'spa', 'TAR365G0112' => 'tar', 'TAR369G0717' => 'tar', 'TAR374G0976' => 'tar', 'TAR623G1128' => 'tar', 'TAR626G1937' => 'tar', 'TAR627G0123' => 'tar', 'TAR628G0305' => 'tar', 'TAR636G1176' => 'tar', 'TAR636G2442' => 'tar', 'THA.LOC104800556' => 'tha', 'THA.LOC104809501' => 'tha', 'THA.LOC104815126' => 'tha', 'THA.LOC104815732' => 'tha', 'THA.LOC104823528' => 'tha', 'Thecc.02G365600' => 'tca', 'Thecc.06G222300' => 'tca', 'Thecc.09G261800' => 'tca', 'Thecc.09G291400' => 'tca', 'Thhalv10003028m.g' => 'esa', 'Thhalv10007886m.g' => 'esa', 'Thhalv10016085m.g' => 'esa', 'Thhalv10016681m.g' => 'esa', 'Thhalv10020951m.g' => 'esa', 'TPR.G15598' => 'tpr', 'TPR.G29305' => 'tpr', 'TPR.G32395' => 'tpr', 'TPR.G36998' => 'tpr', 'TPR.G4227' => 'tpr', 'TWI18G1433' => 'twi', 'TWI31G0755' => 'twi', 'TWI38G0912' => 'twi', 'TWI75G1097' => 'twi', 'TWI75G1619' => 'twi', 'TWI79G1336' => 'twi', 'unitig_0.g943' => 'ugi', 'unitig_0.g944' => 'ugi', 'unitig_22.g6646' => 'ugi', 'unitig_37.g12681' => 'ugi', 'unitig_8.g3290' => 'ugi', 'vmacro03278' => 'vma', 'vmacro12197' => 'vma', 'vmacro14478' => 'vma', 'vmacro15787' => 'vma', 'vmacro15789' => 'vma', 'vmacro15790' => 'vma', 'vmacro15806' => 'vma', 'vmacro22907' => 'vma', 'vmacro22908' => 'vma', 'vmacro22909' => 'vma', 'vmacro23108' => 'vma', 'VMungo0540G0540' => 'vmu', 'VMungo0540G2468' => 'vmu', 'VMungo1080G0390' => 'vmu', 'VMungo1080G1165' => 'vmu', 'VMungo1127G0170' => 'vmu', 'VMungo1127G2099' => 'vmu', 'VMungo1215G3013' => 'vmu', 'Zm00001eb013110' => 'zma', 'Zm00001eb084260' => 'zma', 'Zm00001eb096110' => 'zma', 'Zm00001eb217510' => 'zma', 'Zm00001eb322550' => 'zma', 'Zm00001eb390770' => 'zma', 'Zm00001eb397170' => 'zma', 'Zm00001eb404610' => 'zma', 'Zm00001eb421790' => 'zma' ), 'gf_id' => 'HOM05D000911', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000911' ), 'data_identifier' => 'HOM05D000911', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000911', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27780' => 'bna', 'A03p35380' => 'bna', 'A04p21160' => 'bna', 'A05p40570' => 'bna', 'A06p26900' => 'bna', 'A08p33230' => 'bna', 'A09p65960' => 'bna', 'A10p18290' => 'bna', 'Aa31LG1G12990' => 'aar', 'Aa31LG1G2980' => 'aar', 'Aa31LG4G14320' => 'aar', 'Aa31LG7G11800' => 'aar', 'Aa31sc36G50' => 'aar', 'Aa31sc36G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3721' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5459' => 'aag', 'Actinidia03028' => 'ach', 'Actinidia03753' => 'ach', 'Actinidia04187' => 'ach', 'Actinidia05509' => 'ach', 'Actinidia24180' => 'ach', 'Actinidia26906' => 'ach', 'Actinidia37097' => 'ach', 'Actinidia38249' => 'ach', 'Ah.01g003470' => 'amhyb', 'Ah.01g004580' => 'amhyb', 'Ah.01g014850' => 'amhyb', 'Ah.01g016830' => 'amhyb', 'Ah.14g088000' => 'amhyb', 'AL1G22980' => 'aly', 'AL3G18990' => 'aly', 'AL4G22440' => 'aly', 'AL4G33180' => 'aly', 'AL5G22920' => 'aly', 'AL6G33660' => 'aly', 'AL8G20720' => 'aly', 'Aqoxy1G00935' => 'aox', 'Aqoxy1G02094' => 'aox', 'Aqoxy2G01239' => 'aox', 'Aqoxy4G01870' => 'aox', 'Aqoxy7G00450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.36ZVTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71EM27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5D6C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH3WRE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3NCM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RIM768' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YB5YRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z36GDV' => 'arhy', 'AT1G08250' => 'ath', 'AT1G11790' => 'ath', 'AT2G27820' => 'ath', 'AT3G07630' => 'ath', 'AT3G44720' => 'ath', 'AT5G22630' => 'ath', 'ATR0693G304' => 'atr', 'ATR0794G109' => 'atr', 'ATR0820G120' => 'atr', 'ATR1159G064' => 'atr', 'Atru.chr10.2239' => 'acertr', 'Atru.chr3.3371' => 'acertr', 'Atru.chr6.3202' => 'acertr', 'AUR62006499' => 'cqu', 'AUR62012718' => 'cqu', 'AUR62021938' => 'cqu', 'AUR62023932' => 'cqu', 'AUR62025034' => 'cqu', 'AUR62025035' => 'cqu', 'AUR62038307' => 'cqu', 'AUR62043466' => 'cqu', 'BcaB02g10748' => 'bca', 'BcaB03g13231' => 'bca', 'BcaB03g14689' => 'bca', 'BcaB05g22716' => 'bca', 'BcaB06g28172' => 'bca', 'BcaB08g36413' => 'bca', 'BcaC01g02186' => 'bca', 'BcaC01g04272' => 'bca', 'BcaC02g08080' => 'bca', 'BcaC02g08227' => 'bca', 'BcaC03g13901' => 'bca', 'BcaC04g19593' => 'bca', 'BcaC04g20874' => 'bca', 'BcaC05g29557' => 'bca', 'BcaC06g35505' => 'bca', 'BcaC07g41954' => 'bca', 'BcaC07g41955' => 'bca', 'BcaC07g41956' => 'bca', 'BcaC07g42519' => 'bca', 'BcaC07g42520' => 'bca', 'BcaC07g42523' => 'bca', 'BcaC07g42524' => 'bca', 'BcaC07g42525' => 'bca', 'BcaC08g47480' => 'bca', 'BcaC08g47481' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00530' => 'bna', 'BolC2t07178H' => 'bol', 'BolC3t16567H' => 'bol', 'BolC4t27234H' => 'bol', 'BolC5t29728H' => 'bol', 'BolC5t34622H' => 'bol', 'BolC6t40321H' => 'bol', 'BolC7t42028H' => 'bol', 'BolC8t49125H' => 'bol', 'BolC8t52538H' => 'bol', 'BolC8t52539H' => 'bol', 'BolC9t56681H' => 'bol', 'BolC9t58266H' => 'bol', 'BolSC21t60294H' => 'bol', 'BraA02t05670Z' => 'bra', 'BraA03t12716Z' => 'bra', 'BraA04t17685Z' => 'bra', 'BraA05t22788Z' => 'bra', 'BraA06t24032Z' => 'bra', 'BraA06t25625Z' => 'bra', 'BraA07t27930Z' => 'bra', 'BraA08t35242Z' => 'bra', 'BraA09t38609Z' => 'bra', 'BraA10t43905Z' => 'bra', 'C02p11060' => 'bna', 'C03p42990' => 'bna', 'C03p67310' => 'bna', 'C04p56990' => 'bna', 'C04p58660' => 'bna', 'C05p09890' => 'bna', 'C05p59680' => 'bna', 'C06p19830' => 'bna', 'C06p53040' => 'bna', 'C07p15230' => 'bna', 'C08p50070' => 'bna', 'C08p50090' => 'bna', 'C09p38330' => 'bna', 'C09p53940' => 'bna', 'CAN.G1014.1' => 'can', 'CAN.G644.30' => 'can', 'CAN.G84.47' => 'can', 'CAN.G919.8' => 'can', 'CANSAT54G0113' => 'cansat', 'CANSAT54G1286' => 'cansat', 'CANSAT64G1020' => 'cansat', 'CARHR008080' => 'chi', 'CARHR008090' => 'chi', 'CARHR012130' => 'chi', 'CARHR038390' => 'chi', 'CARHR082330' => 'chi', 'CARHR120520' => 'chi', 'CARHR151470' => 'chi', 'CARHR190950' => 'chi', 'Carub.0001s0760' => 'cru', 'Carub.0001s1146' => 'cru', 'Carub.0003s0721' => 'cru', 'Carub.0004s0858' => 'cru', 'Carub.0005s1040' => 'cru', 'Carub.0006s2035' => 'cru', 'Carub.0015s0005' => 'cru', 'Ca_01607_v3' => 'car', 'Ca_01677_v3' => 'car', 'Ca_06087_v3' => 'car', 'Ca_19238_v3' => 'car', 'Ca_19373_v3' => 'car', 'Ca_21079_v3' => 'car', 'CBR_g54016' => 'cbr', 'CBR_g54018' => 'cbr', 'CBR_g54020' => 'cbr', 'Cc01_g09780' => 'ccan', 'Cc01_g11680' => 'ccan', 'Cc02_g15610' => 'ccan', 'Cc05_g04350' => 'ccan', 'Cc09_g01580' => 'ccan', 'CDE01G0795' => 'cde', 'CDE02G2024' => 'cde', 'CDE02G2260' => 'cde', 'CDE02G4561' => 'cde', 'CDE05G2733' => 'cde', 'CDE05G3422' => 'cde', 'CDE06G2003' => 'cde', 'CDE08G0576' => 'cde', 'CDE09G0048' => 'cde', 'CDE11G0805' => 'cde', 'Cfa003644' => 'cfa', 'Cfa006290' => 'cfa', 'Cfa010080' => 'cfa', 'Cfa011376' => 'cfa', 'Cfa011576' => 'cfa', 'Cfa011577' => 'cfa', 'Cfa014389' => 'cfa', 'Ciclev10006044m.g' => 'ccl', 'Ciclev10006954m.g' => 'ccl', 'Ciclev10015131m.g' => 'ccl', 'Ciclev10015580m.g' => 'ccl', 'Ciclev10028359m.g' => 'ccl', 'Ciclev10028573m.g' => 'ccl', 'CiPaw.03G159300' => 'cil', 'CiPaw.04G115100' => 'cil', 'CiPaw.09G092800' => 'cil', 'CiPaw.10G071800' => 'cil', 'CiPaw.13G105800' => 'cil', 'CiPaw.13G141000' => 'cil', 'CiPaw.14G103400' => 'cil', 'ClCG01G012700' => 'cla', 'ClCG01G012720' => 'cla', 'ClCG01G021920' => 'cla', 'ClCG02G008870' => 'cla', 'ClCG02G020840' => 'cla', 'ClCG02G021930' => 'cla', 'COL.COLO4_19302' => 'col', 'COL.COLO4_25262' => 'col', 'COL.COLO4_31788' => 'col', 'Cpa.g.c34684' => 'cpa', 'Cpa.g.c36520.1' => 'cpa', 'Cpa.g.c45626' => 'cpa', 'Cpa.g.sc121.17' => 'cpa', 'Cpa.g.sc13.22' => 'cpa', 'Cpa.g.sc87.88' => 'cpa', 'Cre06.g261800' => 'cre', 'CsaV3_1G014500' => 'csa', 'CsaV3_1G014510' => 'csa', 'CsaV3_2G034880' => 'csa', 'CsaV3_6G014760' => 'csa', 'CsaV3_6G021500' => 'csa', 'CsaV3_6G048980' => 'csa', 'CSS0002511' => 'camsi', 'CSS0007556' => 'camsi', 'CSS0008532' => 'camsi', 'CSS0009709' => 'camsi', 'CSS0010486' => 'camsi', 'CSS0016768' => 'camsi', 'CSS0023512' => 'camsi', 'CSS0025341' => 'camsi', 'CSS0027999' => 'camsi', 'CSS0028944' => 'camsi', 'CSS0032292' => 'camsi', 'CSS0032464' => 'camsi', 'CSS0037153' => 'camsi', 'CSS0039256' => 'camsi', 'CSS0048392' => 'camsi', 'CSS0050458' => 'camsi', 'DCAR_004224' => 'dca', 'DCAR_006147' => 'dca', 'DCAR_006465' => 'dca', 'DCAR_008159' => 'dca', 'DCAR_012164' => 'dca', 'DCAR_019764' => 'dca', 'Dinv05418' => 'din', 'Dinv10839' => 'din', 'Dinv12521' => 'din', 'Dinv13900' => 'din', 'Dinv29426' => 'din', 'Duzib150G0263' => 'dzi', 'Duzib168G1178' => 'dzi', 'Duzib168G1924' => 'dzi', 'Duzib170G0299' => 'dzi', 'Duzib170G0813' => 'dzi', 'Duzib235G1128' => 'dzi', 'Duzib248G1060' => 'dzi', 'ECA232G1910' => 'eca', 'ECA233G4621' => 'eca', 'ECA238G1216' => 'eca', 'ECA238G1784' => 'eca', 'ECA248G1242' => 'eca', 'EL10Ac8g20071' => 'bvu', 'EL10Ac9g21086' => 'bvu', 'EL10Ac9g22407' => 'bvu', 'EL10Ac9g22412' => 'bvu', 'Eucgr.A01119' => 'egr', 'Eucgr.E04043' => 'egr', 'Eucgr.J00428' => 'egr', 'Eucgr.J00958' => 'egr', 'FAN11G3091' => 'fan', 'FAN11G3651' => 'fan', 'FAN16G2566' => 'fan', 'FAN21G3155' => 'fan', 'FAN21G3400' => 'fan', 'FAN21G3543' => 'fan', 'FAN25G0234' => 'fan', 'FAN25G1422' => 'fan', 'FAN25G3392' => 'fan', 'FvH4_3g01940' => 'fve', 'FvH4_3g29870' => 'fve', 'FvH4_3g33680' => 'fve', 'Glyma.09G004200' => 'gma', 'Glyma.11G151288' => 'gma', 'Glyma.11G189100' => 'gma', 'Glyma.12G072500' => 'gma', 'Glyma.12G085500' => 'gma', 'Glyma.12G181800' => 'gma', 'Glyma.12G193000' => 'gma', 'Glyma.13G309300' => 'gma', 'Glyma.13G319000' => 'gma', 'Glyma.17G012600' => 'gma', 'Gohir.A06G148600' => 'ghi', 'Gohir.A07G115800' => 'ghi', 'Gohir.A08G003600' => 'ghi', 'Gohir.A09G093300' => 'ghi', 'Gohir.A09G105400' => 'ghi', 'Gohir.A09G105500' => 'ghi', 'Gohir.D06G154600' => 'ghi', 'Gohir.D07G120200' => 'ghi', 'Gohir.D08G013900' => 'ghi', 'Gohir.D09G093100' => 'ghi', 'Gohir.D09G102200' => 'ghi', 'Gohir.D09G102300' => 'ghi', 'Gorai.001G129400' => 'gra', 'Gorai.004G008200' => 'gra', 'Gorai.006G109800' => 'gra', 'Gorai.006G119500' => 'gra', 'Gorai.006G121300' => 'gra', 'Gorai.010G180700' => 'gra', 'GSVIVG01012716001' => 'vvi', 'GSVIVG01025118001' => 'vvi', 'GSVIVG01030439001' => 'vvi', 'GSVIVG01031397001' => 'vvi', 'HanXRQChr01g0004201' => 'han', 'HanXRQChr02g0054941' => 'han', 'HanXRQChr05g0141811' => 'han', 'HanXRQChr07g0197751' => 'han', 'HanXRQChr11g0346691' => 'han', 'HanXRQChr13g0396971' => 'han', 'HanXRQChr14g0432951' => 'han', 'HanXRQChr14g0452001' => 'han', 'HanXRQChr15g0496681' => 'han', 'HanXRQChr17g0557491' => 'han', 'HanXRQChr17g0557501' => 'han', 'Haze_06809' => 'cav', 'Haze_12852' => 'cav', 'Haze_15850' => 'cav', 'Haze_23446' => 'cav', 'Haze_23942' => 'cav', 'Haze_23943' => 'cav', 'Hma1.2p1_0091F.1_g046450' => 'hma', 'Hma1.2p1_0128F.1_g059910' => 'hma', 'Hma1.2p1_0249F.1_g102260' => 'hma', 'Hma1.2p1_0453F.1_g156190' => 'hma', 'Hma1.2p1_0695F.1_g204380' => 'hma', 'Hma1.2p1_0749F.1_g212650' => 'hma', 'Hma1.2p1_2156F.1_g315420' => 'hma', 'Hma1.2p1_2686F.1_g326940' => 'hma', 'HPP92_006428' => 'vpl', 'HPP92_012069' => 'vpl', 'HPP92_014129' => 'vpl', 'HPP92_014133' => 'vpl', 'HPP92_017315' => 'vpl', 'HPP92_026445' => 'vpl', 'HPP92_026446' => 'vpl', 'Hund00774' => 'sun', 'Hund07682' => 'sun', 'Hund21413' => 'sun', 'Hund23462' => 'sun', 'Hund23463' => 'sun', 'Lalb_Chr03g0027911' => 'lal', 'Lalb_Chr13g0304271' => 'lal', 'Lalb_Chr19g0137471' => 'lal', 'Lalb_Chr22g0350651' => 'lal', 'Lalb_Chr24g0395151' => 'lal', 'Lj1A1231T40' => 'lonja', 'Lj1A221T48' => 'lonja', 'Lj1C924T12' => 'lonja', 'Lj2C993G6' => 'lonja', 'Lj3g0005790' => 'lja', 'Lj3g0015432' => 'lja', 'Lj3g0017722' => 'lja', 'Lj3g0018497' => 'lja', 'Lj4g0025071' => 'lja', 'Lsat_1_v5_gn_1_129680' => 'lsa', 'Lsat_1_v5_gn_2_25321' => 'lsa', 'Lsat_1_v5_gn_2_95461' => 'lsa', 'Lsat_1_v5_gn_4_159620' => 'lsa', 'Lsat_1_v5_gn_6_41301' => 'lsa', 'Lsat_1_v5_gn_6_74660' => 'lsa', 'Lsat_1_v5_gn_7_11520' => 'lsa', 'Lsat_1_v5_gn_9_67680' => 'lsa', 'Manes.04G008300' => 'mes', 'Manes.04G008400' => 'mes', 'Manes.04G026500' => 'mes', 'Manes.10G135300' => 'mes', 'Manes.11G157300' => 'mes', 'Manes.12G074000' => 'mes', 'Manes.16G006200' => 'mes', 'Manes.17G026400' => 'mes', 'Mapoly0024s0086' => 'mpo', 'Mapoly0024s0087' => 'mpo', 'Mapoly0071s0057' => 'mpo', 'Mapoly0204s0012' => 'mpo', 'MBI04_g37681_MAGBIO' => 'mbi', 'MBI05_g17779_MAGBIO' => 'mbi', 'MBI12_g31184_MAGBIO' => 'mbi', 'MBI17_g11083_MAGBIO' => 'mbi', 'MBI18_g03883_MAGBIO' => 'mbi', 'MBI18_g28940_MAGBIO' => 'mbi', 'MCO01G690' => 'mco', 'MD03G1109900' => 'mdo', 'MD03G1134800' => 'mdo', 'MD05G1348000' => 'mdo', 'MD10G1322400' => 'mdo', 'MD11G1123300' => 'mdo', 'MD11G1157600' => 'mdo', 'Medtr2g084875' => 'mtr', 'Medtr2g088130' => 'mtr', 'Medtr4g055310' => 'mtr', 'Medtr4g061070' => 'mtr', 'Medtr4g132250' => 'mtr', 'MELO3C004795.2' => 'cme', 'MELO3C004797.2' => 'cme', 'MELO3C007396.2' => 'cme', 'MELO3C019277.2' => 'cme', 'MELO3C021449.2' => 'cme', 'MELO3C025736.2' => 'cme', 'Migut.D02175' => 'egut', 'Migut.H01573' => 'egut', 'Migut.M01327' => 'egut', 'Migut.N02513' => 'egut', 'MSTRG.14638' => 'ama', 'MSTRG.18632' => 'ama', 'MSTRG.7203' => 'ama', 'Nitab4.5_0000533g0140' => 'nta', 'Nitab4.5_0000888g0150' => 'nta', 'Nitab4.5_0001453g0040' => 'nta', 'Nitab4.5_0002827g0090' => 'nta', 'Nitab4.5_0003082g0040' => 'nta', 'Nitab4.5_0007799g0040' => 'nta', 'Nitab4.5_0008983g0010' => 'nta', 'Nitab4.5_0009017g0020' => 'nta', 'Nn1g02132' => 'nnu', 'Nn1g03492' => 'nnu', 'Nn1g03493' => 'nnu', 'Nn1g03494' => 'nnu', 'Nn1g07164' => 'nnu', 'Nn1g07291' => 'nnu', 'Nn2g10655' => 'nnu', 'Nn2g11652' => 'nnu', 'Nn2g14008' => 'nnu', 'Nn3g17476' => 'nnu', 'Nn3g17477' => 'nnu', 'Nn4g22370' => 'nnu', 'Nn4g25255' => 'nnu', 'Nn5g27755' => 'nnu', 'Nn6g34260' => 'nnu', 'Nn6g35041' => 'nnu', 'Oeu005924.1' => 'oeu', 'Oeu008383.1' => 'oeu', 'Oeu014928.1' => 'oeu', 'Oeu019889.1' => 'oeu', 'Oeu022271.1' => 'oeu', 'Oeu025271.1' => 'oeu', 'Oeu036302.1' => 'oeu', 'Oeu044100.1' => 'oeu', 'Os01g0528300' => 'osa', 'Os03g0286200' => 'osa', 'Os04g0406600' => 'osa', 'Os07g0512000' => 'osa', 'Os07g0694600' => 'osa', 'Os08g0411000' => 'osa', 'Os09g0565700' => 'osa', 'Os09g0566050' => 'osa', 'Os10g0523700' => 'osa', 'Peaxi162Scf00002g00514' => 'pax', 'Peaxi162Scf00047g01817' => 'pax', 'Peaxi162Scf00114g00001' => 'pax', 'Peaxi162Scf00147g00613' => 'pax', 'Peaxi162Scf00389g00425' => 'pax', 'PGR042G1139' => 'pgr', 'PGR042G3273' => 'pgr', 'PGR102G2180' => 'pgr', 'PGR119G0234' => 'pgr', 'PGR119G0668' => 'pgr', 'PGSC0003DMG400007122' => 'stu', 'PGSC0003DMG400016478' => 'stu', 'PGSC0003DMG400025374' => 'stu', 'PGSC0003DMG400026536' => 'stu', 'Phvul.003G079600' => 'pvu', 'Phvul.005G115600' => 'pvu', 'Phvul.005G127100' => 'pvu', 'Phvul.006G149500' => 'pvu', 'Phvul.006G149600' => 'pvu', 'Phvul.011G071800' => 'pvu', 'Phvul.011G090400' => 'pvu', 'Potri.004G013400' => 'ptr', 'Potri.004G188100' => 'ptr', 'Potri.008G195500' => 'ptr', 'Potri.009G148800' => 'ptr', 'Potri.011G004700' => 'ptr', 'Pp3c17_22810' => 'ppa', 'Pp3c18_4480' => 'ppa', 'Pp3c19_13030' => 'ppa', 'Pp3c1_33620' => 'ppa', 'Pp3c2_9380' => 'ppa', 'PRCOL_00001023' => 'pco', 'Prupe.3G216300' => 'ppe', 'Prupe.4G019500' => 'ppe', 'Prupe.6G092500' => 'ppe', 'Prupe.6G119200' => 'ppe', 'Psat0s1945g0080' => 'psa', 'Psat0s4167g0040' => 'psa', 'Psat1g185800' => 'psa', 'Psat4g006440' => 'psa', 'Psat4g006480' => 'psa', 'Psat4g168120' => 'psa', 'Psat5g255680' => 'psa', 'Psat5g261760' => 'psa', 'Psat7g222120' => 'psa', 'PSO063G7252' => 'pso', 'PSO170G4778' => 'pso', 'PSO210G2249' => 'pso', 'PSO339G2411' => 'pso', 'PSO339G2457' => 'pso', 'PSO339G2854' => 'pso', 'PSO339G4288' => 'pso', 'PSO339G4615' => 'pso', 'PSO384G2796' => 'pso', 'PSO384G2940' => 'pso', 'PSO384G4227' => 'pso', 'PSO478G1425' => 'pso', 'PSO541G3863' => 'pso', 'PSO675G0507' => 'pso', 'PSO782G0338' => 'pso', 'PSO832G0644' => 'pso', 'QL01p013664' => 'qlo', 'QL01p036598' => 'qlo', 'QL05p072984' => 'qlo', 'QL08p005768' => 'qlo', 'QL08p032743' => 'qlo', 'QL93p0073_0439' => 'qlo', 'QL93p0073_0444' => 'qlo', 'RcHm_v2.0_Chr5g0002851' => 'rch', 'RcHm_v2.0_Chr5g0055201' => 'rch', 'RcHm_v2.0_Chr5g0061191' => 'rch', 'RcHm_v2.0_Chr7g0203231' => 'rch', 'Rhsim01G0208100' => 'rsi', 'Rhsim01G0208200' => 'rsi', 'Rhsim02G0106500' => 'rsi', 'Rhsim03G0107900' => 'rsi', 'Rhsim06G0163400' => 'rsi', 'Rhsim13G0105200' => 'rsi', 'Sabra04G0006300' => 'sbr', 'Sabra04G0127000' => 'sbr', 'Sabra08G0148700' => 'sbr', 'Sabra09G0117400' => 'sbr', 'SalBow1G3326' => 'sbo', 'SalBow3G3228' => 'sbo', 'SalBow6G1634' => 'sbo', 'SalBow6G3603' => 'sbo', 'SalBow6G5266' => 'sbo', 'SalBow7G2265' => 'sbo', 'SalBow8G0850' => 'sbo', 'SalBow8G2592' => 'sbo', 'Sc05g0009240' => 'sci', 'Sc12g0002300' => 'sci', 'Sc21g0000100' => 'sci', 'Sc21g0004720' => 'sci', 'Sed0002949' => 'sed', 'Sed0004114' => 'sed', 'Sed0004306' => 'sed', 'Sed0006172' => 'sed', 'Sed0008413' => 'sed', 'Sed0013809' => 'sed', 'Sed0019556' => 'sed', 'SEGI_03570' => 'sgi', 'SEGI_07859' => 'sgi', 'SEGI_15042' => 'sgi', 'SEGI_16263' => 'sgi', 'SEGI_16552' => 'sgi', 'SEGI_24331' => 'sgi', 'SEGI_27316' => 'sgi', 'SEGI_29521' => 'sgi', 'SEGI_41342' => 'sgi', 'SGA_v2.0_scaffold27G11617' => 'sas', 'SGA_v2.0_scaffold316G48428' => 'sas', 'SGA_v2.0_scaffold49G18261' => 'sas', 'SGA_v2.0_scaffold7G03831' => 'sas', 'SGA_v2.0_scaffold93G28359' => 'sas', 'SHI02210' => 'shi', 'SHI06028' => 'shi', 'SHI06321' => 'shi', 'SMO111G0012' => 'smo', 'SMO228G0080' => 'smo', 'SMO356G0756' => 'smo', 'Solyc02g080620.3' => 'sly', 'Solyc06g074530.1' => 'sly', 'Solyc11g066890.1' => 'sly', 'Solyc11g072520.3' => 'sly', 'Sopen02g025330' => 'spe', 'Sopen06g031000' => 'spe', 'Sopen09g008240' => 'spe', 'Sopen09g025210' => 'spe', 'Sopen11g026600' => 'spe', 'Sopen11g030170' => 'spe', 'Sp1g10420' => 'spa', 'Sp3g06570' => 'spa', 'Sp4g10660' => 'spa', 'Sp5g16460' => 'spa', 'Sp6g22710' => 'spa', 'TAR365G0112' => 'tar', 'TAR369G0717' => 'tar', 'TAR374G0976' => 'tar', 'TAR623G1128' => 'tar', 'TAR626G1937' => 'tar', 'TAR627G0123' => 'tar', 'TAR628G0305' => 'tar', 'TAR636G1176' => 'tar', 'TAR636G2442' => 'tar', 'THA.LOC104800556' => 'tha', 'THA.LOC104809501' => 'tha', 'THA.LOC104815126' => 'tha', 'THA.LOC104815732' => 'tha', 'THA.LOC104823528' => 'tha', 'Thecc.02G365600' => 'tca', 'Thecc.06G222300' => 'tca', 'Thecc.09G261800' => 'tca', 'Thecc.09G291400' => 'tca', 'Thhalv10003028m.g' => 'esa', 'Thhalv10007886m.g' => 'esa', 'Thhalv10016085m.g' => 'esa', 'Thhalv10016681m.g' => 'esa', 'Thhalv10020951m.g' => 'esa', 'TPR.G15598' => 'tpr', 'TPR.G29305' => 'tpr', 'TPR.G32395' => 'tpr', 'TPR.G36998' => 'tpr', 'TPR.G4227' => 'tpr', 'TWI18G1433' => 'twi', 'TWI31G0755' => 'twi', 'TWI38G0912' => 'twi', 'TWI75G1097' => 'twi', 'TWI75G1619' => 'twi', 'TWI79G1336' => 'twi', 'unitig_0.g943' => 'ugi', 'unitig_0.g944' => 'ugi', 'unitig_22.g6646' => 'ugi', 'unitig_37.g12681' => 'ugi', 'unitig_8.g3290' => 'ugi', 'vmacro03278' => 'vma', 'vmacro12197' => 'vma', 'vmacro14478' => 'vma', 'vmacro15787' => 'vma', 'vmacro15789' => 'vma', 'vmacro15790' => 'vma', 'vmacro15806' => 'vma', 'vmacro22907' => 'vma', 'vmacro22908' => 'vma', 'vmacro22909' => 'vma', 'vmacro23108' => 'vma', 'VMungo0540G0540' => 'vmu', 'VMungo0540G2468' => 'vmu', 'VMungo1080G0390' => 'vmu', 'VMungo1080G1165' => 'vmu', 'VMungo1127G0170' => 'vmu', 'VMungo1127G2099' => 'vmu', 'VMungo1215G3013' => 'vmu', 'Zm00001eb013110' => 'zma', 'Zm00001eb084260' => 'zma', 'Zm00001eb096110' => 'zma', 'Zm00001eb217510' => 'zma', 'Zm00001eb322550' => 'zma', 'Zm00001eb390770' => 'zma', 'Zm00001eb397170' => 'zma', 'Zm00001eb404610' => 'zma', 'Zm00001eb421790' => 'zma' ) $gf_id = 'HOM05D000911' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000911' ) $data_identifier = 'HOM05D000911' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 16, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 5, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 6, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 8, 'nnu' => (int) 16, 'oeu' => (int) 8, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 5, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 16, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421790' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000911', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27780' => 'bna', 'A03p35380' => 'bna', 'A04p21160' => 'bna', 'A05p40570' => 'bna', 'A06p26900' => 'bna', 'A08p33230' => 'bna', 'A09p65960' => 'bna', 'A10p18290' => 'bna', 'Aa31LG1G12990' => 'aar', 'Aa31LG1G2980' => 'aar', 'Aa31LG4G14320' => 'aar', 'Aa31LG7G11800' => 'aar', 'Aa31sc36G50' => 'aar', 'Aa31sc36G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3721' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5459' => 'aag', 'Actinidia03028' => 'ach', 'Actinidia03753' => 'ach', 'Actinidia04187' => 'ach', 'Actinidia05509' => 'ach', 'Actinidia24180' => 'ach', 'Actinidia26906' => 'ach', 'Actinidia37097' => 'ach', 'Actinidia38249' => 'ach', 'Ah.01g003470' => 'amhyb', 'Ah.01g004580' => 'amhyb', 'Ah.01g014850' => 'amhyb', 'Ah.01g016830' => 'amhyb', 'Ah.14g088000' => 'amhyb', 'AL1G22980' => 'aly', 'AL3G18990' => 'aly', 'AL4G22440' => 'aly', 'AL4G33180' => 'aly', 'AL5G22920' => 'aly', 'AL6G33660' => 'aly', 'AL8G20720' => 'aly', 'Aqoxy1G00935' => 'aox', 'Aqoxy1G02094' => 'aox', 'Aqoxy2G01239' => 'aox', 'Aqoxy4G01870' => 'aox', 'Aqoxy7G00450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.36ZVTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71EM27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5D6C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH3WRE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3NCM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RIM768' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YB5YRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z36GDV' => 'arhy', 'AT1G08250' => 'ath', 'AT1G11790' => 'ath', 'AT2G27820' => 'ath', 'AT3G07630' => 'ath', 'AT3G44720' => 'ath', 'AT5G22630' => 'ath', 'ATR0693G304' => 'atr', 'ATR0794G109' => 'atr', 'ATR0820G120' => 'atr', 'ATR1159G064' => 'atr', 'Atru.chr10.2239' => 'acertr', 'Atru.chr3.3371' => 'acertr', 'Atru.chr6.3202' => 'acertr', 'AUR62006499' => 'cqu', 'AUR62012718' => 'cqu', 'AUR62021938' => 'cqu', 'AUR62023932' => 'cqu', 'AUR62025034' => 'cqu', 'AUR62025035' => 'cqu', 'AUR62038307' => 'cqu', 'AUR62043466' => 'cqu', 'BcaB02g10748' => 'bca', 'BcaB03g13231' => 'bca', 'BcaB03g14689' => 'bca', 'BcaB05g22716' => 'bca', 'BcaB06g28172' => 'bca', 'BcaB08g36413' => 'bca', 'BcaC01g02186' => 'bca', 'BcaC01g04272' => 'bca', 'BcaC02g08080' => 'bca', 'BcaC02g08227' => 'bca', 'BcaC03g13901' => 'bca', 'BcaC04g19593' => 'bca', 'BcaC04g20874' => 'bca', 'BcaC05g29557' => 'bca', 'BcaC06g35505' => 'bca', 'BcaC07g41954' => 'bca', 'BcaC07g41955' => 'bca', 'BcaC07g41956' => 'bca', 'BcaC07g42519' => 'bca', 'BcaC07g42520' => 'bca', 'BcaC07g42523' => 'bca', 'BcaC07g42524' => 'bca', 'BcaC07g42525' => 'bca', 'BcaC08g47480' => 'bca', 'BcaC08g47481' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00530' => 'bna', 'BolC2t07178H' => 'bol', 'BolC3t16567H' => 'bol', 'BolC4t27234H' => 'bol', 'BolC5t29728H' => 'bol', 'BolC5t34622H' => 'bol', 'BolC6t40321H' => 'bol', 'BolC7t42028H' => 'bol', 'BolC8t49125H' => 'bol', 'BolC8t52538H' => 'bol', 'BolC8t52539H' => 'bol', 'BolC9t56681H' => 'bol', 'BolC9t58266H' => 'bol', 'BolSC21t60294H' => 'bol', 'BraA02t05670Z' => 'bra', 'BraA03t12716Z' => 'bra', 'BraA04t17685Z' => 'bra', 'BraA05t22788Z' => 'bra', 'BraA06t24032Z' => 'bra', 'BraA06t25625Z' => 'bra', 'BraA07t27930Z' => 'bra', 'BraA08t35242Z' => 'bra', 'BraA09t38609Z' => 'bra', 'BraA10t43905Z' => 'bra', 'C02p11060' => 'bna', 'C03p42990' => 'bna', 'C03p67310' => 'bna', 'C04p56990' => 'bna', 'C04p58660' => 'bna', 'C05p09890' => 'bna', 'C05p59680' => 'bna', 'C06p19830' => 'bna', 'C06p53040' => 'bna', 'C07p15230' => 'bna', 'C08p50070' => 'bna', 'C08p50090' => 'bna', 'C09p38330' => 'bna', 'C09p53940' => 'bna', 'CAN.G1014.1' => 'can', 'CAN.G644.30' => 'can', 'CAN.G84.47' => 'can', 'CAN.G919.8' => 'can', 'CANSAT54G0113' => 'cansat', 'CANSAT54G1286' => 'cansat', 'CANSAT64G1020' => 'cansat', 'CARHR008080' => 'chi', 'CARHR008090' => 'chi', 'CARHR012130' => 'chi', 'CARHR038390' => 'chi', 'CARHR082330' => 'chi', 'CARHR120520' => 'chi', 'CARHR151470' => 'chi', 'CARHR190950' => 'chi', 'Carub.0001s0760' => 'cru', 'Carub.0001s1146' => 'cru', 'Carub.0003s0721' => 'cru', 'Carub.0004s0858' => 'cru', 'Carub.0005s1040' => 'cru', 'Carub.0006s2035' => 'cru', 'Carub.0015s0005' => 'cru', 'Ca_01607_v3' => 'car', 'Ca_01677_v3' => 'car', 'Ca_06087_v3' => 'car', 'Ca_19238_v3' => 'car', 'Ca_19373_v3' => 'car', 'Ca_21079_v3' => 'car', 'CBR_g54016' => 'cbr', 'CBR_g54018' => 'cbr', 'CBR_g54020' => 'cbr', 'Cc01_g09780' => 'ccan', 'Cc01_g11680' => 'ccan', 'Cc02_g15610' => 'ccan', 'Cc05_g04350' => 'ccan', 'Cc09_g01580' => 'ccan', 'CDE01G0795' => 'cde', 'CDE02G2024' => 'cde', 'CDE02G2260' => 'cde', 'CDE02G4561' => 'cde', 'CDE05G2733' => 'cde', 'CDE05G3422' => 'cde', 'CDE06G2003' => 'cde', 'CDE08G0576' => 'cde', 'CDE09G0048' => 'cde', 'CDE11G0805' => 'cde', 'Cfa003644' => 'cfa', 'Cfa006290' => 'cfa', 'Cfa010080' => 'cfa', 'Cfa011376' => 'cfa', 'Cfa011576' => 'cfa', 'Cfa011577' => 'cfa', 'Cfa014389' => 'cfa', 'Ciclev10006044m.g' => 'ccl', 'Ciclev10006954m.g' => 'ccl', 'Ciclev10015131m.g' => 'ccl', 'Ciclev10015580m.g' => 'ccl', 'Ciclev10028359m.g' => 'ccl', 'Ciclev10028573m.g' => 'ccl', 'CiPaw.03G159300' => 'cil', 'CiPaw.04G115100' => 'cil', 'CiPaw.09G092800' => 'cil', 'CiPaw.10G071800' => 'cil', 'CiPaw.13G105800' => 'cil', 'CiPaw.13G141000' => 'cil', 'CiPaw.14G103400' => 'cil', 'ClCG01G012700' => 'cla', 'ClCG01G012720' => 'cla', 'ClCG01G021920' => 'cla', 'ClCG02G008870' => 'cla', 'ClCG02G020840' => 'cla', 'ClCG02G021930' => 'cla', 'COL.COLO4_19302' => 'col', 'COL.COLO4_25262' => 'col', 'COL.COLO4_31788' => 'col', 'Cpa.g.c34684' => 'cpa', 'Cpa.g.c36520.1' => 'cpa', 'Cpa.g.c45626' => 'cpa', 'Cpa.g.sc121.17' => 'cpa', 'Cpa.g.sc13.22' => 'cpa', 'Cpa.g.sc87.88' => 'cpa', 'Cre06.g261800' => 'cre', 'CsaV3_1G014500' => 'csa', 'CsaV3_1G014510' => 'csa', 'CsaV3_2G034880' => 'csa', 'CsaV3_6G014760' => 'csa', 'CsaV3_6G021500' => 'csa', 'CsaV3_6G048980' => 'csa', 'CSS0002511' => 'camsi', 'CSS0007556' => 'camsi', 'CSS0008532' => 'camsi', 'CSS0009709' => 'camsi', 'CSS0010486' => 'camsi', 'CSS0016768' => 'camsi', 'CSS0023512' => 'camsi', 'CSS0025341' => 'camsi', 'CSS0027999' => 'camsi', 'CSS0028944' => 'camsi', 'CSS0032292' => 'camsi', 'CSS0032464' => 'camsi', 'CSS0037153' => 'camsi', 'CSS0039256' => 'camsi', 'CSS0048392' => 'camsi', 'CSS0050458' => 'camsi', 'DCAR_004224' => 'dca', 'DCAR_006147' => 'dca', 'DCAR_006465' => 'dca', 'DCAR_008159' => 'dca', 'DCAR_012164' => 'dca', 'DCAR_019764' => 'dca', 'Dinv05418' => 'din', 'Dinv10839' => 'din', 'Dinv12521' => 'din', 'Dinv13900' => 'din', 'Dinv29426' => 'din', 'Duzib150G0263' => 'dzi', 'Duzib168G1178' => 'dzi', 'Duzib168G1924' => 'dzi', 'Duzib170G0299' => 'dzi', 'Duzib170G0813' => 'dzi', 'Duzib235G1128' => 'dzi', 'Duzib248G1060' => 'dzi', 'ECA232G1910' => 'eca', 'ECA233G4621' => 'eca', 'ECA238G1216' => 'eca', 'ECA238G1784' => 'eca', 'ECA248G1242' => 'eca', 'EL10Ac8g20071' => 'bvu', 'EL10Ac9g21086' => 'bvu', 'EL10Ac9g22407' => 'bvu', 'EL10Ac9g22412' => 'bvu', 'Eucgr.A01119' => 'egr', 'Eucgr.E04043' => 'egr', 'Eucgr.J00428' => 'egr', 'Eucgr.J00958' => 'egr', 'FAN11G3091' => 'fan', 'FAN11G3651' => 'fan', 'FAN16G2566' => 'fan', 'FAN21G3155' => 'fan', 'FAN21G3400' => 'fan', 'FAN21G3543' => 'fan', 'FAN25G0234' => 'fan', 'FAN25G1422' => 'fan', 'FAN25G3392' => 'fan', 'FvH4_3g01940' => 'fve', 'FvH4_3g29870' => 'fve', 'FvH4_3g33680' => 'fve', 'Glyma.09G004200' => 'gma', 'Glyma.11G151288' => 'gma', 'Glyma.11G189100' => 'gma', 'Glyma.12G072500' => 'gma', 'Glyma.12G085500' => 'gma', 'Glyma.12G181800' => 'gma', 'Glyma.12G193000' => 'gma', 'Glyma.13G309300' => 'gma', 'Glyma.13G319000' => 'gma', 'Glyma.17G012600' => 'gma', 'Gohir.A06G148600' => 'ghi', 'Gohir.A07G115800' => 'ghi', 'Gohir.A08G003600' => 'ghi', 'Gohir.A09G093300' => 'ghi', 'Gohir.A09G105400' => 'ghi', 'Gohir.A09G105500' => 'ghi', 'Gohir.D06G154600' => 'ghi', 'Gohir.D07G120200' => 'ghi', 'Gohir.D08G013900' => 'ghi', 'Gohir.D09G093100' => 'ghi', 'Gohir.D09G102200' => 'ghi', 'Gohir.D09G102300' => 'ghi', 'Gorai.001G129400' => 'gra', 'Gorai.004G008200' => 'gra', 'Gorai.006G109800' => 'gra', 'Gorai.006G119500' => 'gra', 'Gorai.006G121300' => 'gra', 'Gorai.010G180700' => 'gra', 'GSVIVG01012716001' => 'vvi', 'GSVIVG01025118001' => 'vvi', 'GSVIVG01030439001' => 'vvi', 'GSVIVG01031397001' => 'vvi', 'HanXRQChr01g0004201' => 'han', 'HanXRQChr02g0054941' => 'han', 'HanXRQChr05g0141811' => 'han', 'HanXRQChr07g0197751' => 'han', 'HanXRQChr11g0346691' => 'han', 'HanXRQChr13g0396971' => 'han', 'HanXRQChr14g0432951' => 'han', 'HanXRQChr14g0452001' => 'han', 'HanXRQChr15g0496681' => 'han', 'HanXRQChr17g0557491' => 'han', 'HanXRQChr17g0557501' => 'han', 'Haze_06809' => 'cav', 'Haze_12852' => 'cav', 'Haze_15850' => 'cav', 'Haze_23446' => 'cav', 'Haze_23942' => 'cav', 'Haze_23943' => 'cav', 'Hma1.2p1_0091F.1_g046450' => 'hma', 'Hma1.2p1_0128F.1_g059910' => 'hma', 'Hma1.2p1_0249F.1_g102260' => 'hma', 'Hma1.2p1_0453F.1_g156190' => 'hma', 'Hma1.2p1_0695F.1_g204380' => 'hma', 'Hma1.2p1_0749F.1_g212650' => 'hma', 'Hma1.2p1_2156F.1_g315420' => 'hma', 'Hma1.2p1_2686F.1_g326940' => 'hma', 'HPP92_006428' => 'vpl', 'HPP92_012069' => 'vpl', 'HPP92_014129' => 'vpl', 'HPP92_014133' => 'vpl', 'HPP92_017315' => 'vpl', 'HPP92_026445' => 'vpl', 'HPP92_026446' => 'vpl', 'Hund00774' => 'sun', 'Hund07682' => 'sun', 'Hund21413' => 'sun', 'Hund23462' => 'sun', 'Hund23463' => 'sun', 'Lalb_Chr03g0027911' => 'lal', 'Lalb_Chr13g0304271' => 'lal', 'Lalb_Chr19g0137471' => 'lal', 'Lalb_Chr22g0350651' => 'lal', 'Lalb_Chr24g0395151' => 'lal', 'Lj1A1231T40' => 'lonja', 'Lj1A221T48' => 'lonja', 'Lj1C924T12' => 'lonja', 'Lj2C993G6' => 'lonja', 'Lj3g0005790' => 'lja', 'Lj3g0015432' => 'lja', 'Lj3g0017722' => 'lja', 'Lj3g0018497' => 'lja', 'Lj4g0025071' => 'lja', 'Lsat_1_v5_gn_1_129680' => 'lsa', 'Lsat_1_v5_gn_2_25321' => 'lsa', 'Lsat_1_v5_gn_2_95461' => 'lsa', 'Lsat_1_v5_gn_4_159620' => 'lsa', 'Lsat_1_v5_gn_6_41301' => 'lsa', 'Lsat_1_v5_gn_6_74660' => 'lsa', 'Lsat_1_v5_gn_7_11520' => 'lsa', 'Lsat_1_v5_gn_9_67680' => 'lsa', 'Manes.04G008300' => 'mes', 'Manes.04G008400' => 'mes', 'Manes.04G026500' => 'mes', 'Manes.10G135300' => 'mes', 'Manes.11G157300' => 'mes', 'Manes.12G074000' => 'mes', 'Manes.16G006200' => 'mes', 'Manes.17G026400' => 'mes', 'Mapoly0024s0086' => 'mpo', 'Mapoly0024s0087' => 'mpo', 'Mapoly0071s0057' => 'mpo', 'Mapoly0204s0012' => 'mpo', 'MBI04_g37681_MAGBIO' => 'mbi', 'MBI05_g17779_MAGBIO' => 'mbi', 'MBI12_g31184_MAGBIO' => 'mbi', 'MBI17_g11083_MAGBIO' => 'mbi', 'MBI18_g03883_MAGBIO' => 'mbi', 'MBI18_g28940_MAGBIO' => 'mbi', 'MCO01G690' => 'mco', 'MD03G1109900' => 'mdo', 'MD03G1134800' => 'mdo', 'MD05G1348000' => 'mdo', 'MD10G1322400' => 'mdo', 'MD11G1123300' => 'mdo', 'MD11G1157600' => 'mdo', 'Medtr2g084875' => 'mtr', 'Medtr2g088130' => 'mtr', 'Medtr4g055310' => 'mtr', 'Medtr4g061070' => 'mtr', 'Medtr4g132250' => 'mtr', 'MELO3C004795.2' => 'cme', 'MELO3C004797.2' => 'cme', 'MELO3C007396.2' => 'cme', 'MELO3C019277.2' => 'cme', 'MELO3C021449.2' => 'cme', 'MELO3C025736.2' => 'cme', 'Migut.D02175' => 'egut', 'Migut.H01573' => 'egut', 'Migut.M01327' => 'egut', 'Migut.N02513' => 'egut', 'MSTRG.14638' => 'ama', 'MSTRG.18632' => 'ama', 'MSTRG.7203' => 'ama', 'Nitab4.5_0000533g0140' => 'nta', 'Nitab4.5_0000888g0150' => 'nta', 'Nitab4.5_0001453g0040' => 'nta', 'Nitab4.5_0002827g0090' => 'nta', 'Nitab4.5_0003082g0040' => 'nta', 'Nitab4.5_0007799g0040' => 'nta', 'Nitab4.5_0008983g0010' => 'nta', 'Nitab4.5_0009017g0020' => 'nta', 'Nn1g02132' => 'nnu', 'Nn1g03492' => 'nnu', 'Nn1g03493' => 'nnu', 'Nn1g03494' => 'nnu', 'Nn1g07164' => 'nnu', 'Nn1g07291' => 'nnu', 'Nn2g10655' => 'nnu', 'Nn2g11652' => 'nnu', 'Nn2g14008' => 'nnu', 'Nn3g17476' => 'nnu', 'Nn3g17477' => 'nnu', 'Nn4g22370' => 'nnu', 'Nn4g25255' => 'nnu', 'Nn5g27755' => 'nnu', 'Nn6g34260' => 'nnu', 'Nn6g35041' => 'nnu', 'Oeu005924.1' => 'oeu', 'Oeu008383.1' => 'oeu', 'Oeu014928.1' => 'oeu', 'Oeu019889.1' => 'oeu', 'Oeu022271.1' => 'oeu', 'Oeu025271.1' => 'oeu', 'Oeu036302.1' => 'oeu', 'Oeu044100.1' => 'oeu', 'Os01g0528300' => 'osa', 'Os03g0286200' => 'osa', 'Os04g0406600' => 'osa', 'Os07g0512000' => 'osa', 'Os07g0694600' => 'osa', 'Os08g0411000' => 'osa', 'Os09g0565700' => 'osa', 'Os09g0566050' => 'osa', 'Os10g0523700' => 'osa', 'Peaxi162Scf00002g00514' => 'pax', 'Peaxi162Scf00047g01817' => 'pax', 'Peaxi162Scf00114g00001' => 'pax', 'Peaxi162Scf00147g00613' => 'pax', 'Peaxi162Scf00389g00425' => 'pax', 'PGR042G1139' => 'pgr', 'PGR042G3273' => 'pgr', 'PGR102G2180' => 'pgr', 'PGR119G0234' => 'pgr', 'PGR119G0668' => 'pgr', 'PGSC0003DMG400007122' => 'stu', 'PGSC0003DMG400016478' => 'stu', 'PGSC0003DMG400025374' => 'stu', 'PGSC0003DMG400026536' => 'stu', 'Phvul.003G079600' => 'pvu', 'Phvul.005G115600' => 'pvu', 'Phvul.005G127100' => 'pvu', 'Phvul.006G149500' => 'pvu', 'Phvul.006G149600' => 'pvu', 'Phvul.011G071800' => 'pvu', 'Phvul.011G090400' => 'pvu', 'Potri.004G013400' => 'ptr', 'Potri.004G188100' => 'ptr', 'Potri.008G195500' => 'ptr', 'Potri.009G148800' => 'ptr', 'Potri.011G004700' => 'ptr', 'Pp3c17_22810' => 'ppa', 'Pp3c18_4480' => 'ppa', 'Pp3c19_13030' => 'ppa', 'Pp3c1_33620' => 'ppa', 'Pp3c2_9380' => 'ppa', 'PRCOL_00001023' => 'pco', 'Prupe.3G216300' => 'ppe', 'Prupe.4G019500' => 'ppe', 'Prupe.6G092500' => 'ppe', 'Prupe.6G119200' => 'ppe', 'Psat0s1945g0080' => 'psa', 'Psat0s4167g0040' => 'psa', 'Psat1g185800' => 'psa', 'Psat4g006440' => 'psa', 'Psat4g006480' => 'psa', 'Psat4g168120' => 'psa', 'Psat5g255680' => 'psa', 'Psat5g261760' => 'psa', 'Psat7g222120' => 'psa', 'PSO063G7252' => 'pso', 'PSO170G4778' => 'pso', 'PSO210G2249' => 'pso', 'PSO339G2411' => 'pso', 'PSO339G2457' => 'pso', 'PSO339G2854' => 'pso', 'PSO339G4288' => 'pso', 'PSO339G4615' => 'pso', 'PSO384G2796' => 'pso', 'PSO384G2940' => 'pso', 'PSO384G4227' => 'pso', 'PSO478G1425' => 'pso', 'PSO541G3863' => 'pso', 'PSO675G0507' => 'pso', 'PSO782G0338' => 'pso', 'PSO832G0644' => 'pso', 'QL01p013664' => 'qlo', 'QL01p036598' => 'qlo', 'QL05p072984' => 'qlo', 'QL08p005768' => 'qlo', 'QL08p032743' => 'qlo', 'QL93p0073_0439' => 'qlo', 'QL93p0073_0444' => 'qlo', 'RcHm_v2.0_Chr5g0002851' => 'rch', 'RcHm_v2.0_Chr5g0055201' => 'rch', 'RcHm_v2.0_Chr5g0061191' => 'rch', 'RcHm_v2.0_Chr7g0203231' => 'rch', 'Rhsim01G0208100' => 'rsi', 'Rhsim01G0208200' => 'rsi', 'Rhsim02G0106500' => 'rsi', 'Rhsim03G0107900' => 'rsi', 'Rhsim06G0163400' => 'rsi', 'Rhsim13G0105200' => 'rsi', 'Sabra04G0006300' => 'sbr', 'Sabra04G0127000' => 'sbr', 'Sabra08G0148700' => 'sbr', 'Sabra09G0117400' => 'sbr', 'SalBow1G3326' => 'sbo', 'SalBow3G3228' => 'sbo', 'SalBow6G1634' => 'sbo', 'SalBow6G3603' => 'sbo', 'SalBow6G5266' => 'sbo', 'SalBow7G2265' => 'sbo', 'SalBow8G0850' => 'sbo', 'SalBow8G2592' => 'sbo', 'Sc05g0009240' => 'sci', 'Sc12g0002300' => 'sci', 'Sc21g0000100' => 'sci', 'Sc21g0004720' => 'sci', 'Sed0002949' => 'sed', 'Sed0004114' => 'sed', 'Sed0004306' => 'sed', 'Sed0006172' => 'sed', 'Sed0008413' => 'sed', 'Sed0013809' => 'sed', 'Sed0019556' => 'sed', 'SEGI_03570' => 'sgi', 'SEGI_07859' => 'sgi', 'SEGI_15042' => 'sgi', 'SEGI_16263' => 'sgi', 'SEGI_16552' => 'sgi', 'SEGI_24331' => 'sgi', 'SEGI_27316' => 'sgi', 'SEGI_29521' => 'sgi', 'SEGI_41342' => 'sgi', 'SGA_v2.0_scaffold27G11617' => 'sas', 'SGA_v2.0_scaffold316G48428' => 'sas', 'SGA_v2.0_scaffold49G18261' => 'sas', 'SGA_v2.0_scaffold7G03831' => 'sas', 'SGA_v2.0_scaffold93G28359' => 'sas', 'SHI02210' => 'shi', 'SHI06028' => 'shi', 'SHI06321' => 'shi', 'SMO111G0012' => 'smo', 'SMO228G0080' => 'smo', 'SMO356G0756' => 'smo', 'Solyc02g080620.3' => 'sly', 'Solyc06g074530.1' => 'sly', 'Solyc11g066890.1' => 'sly', 'Solyc11g072520.3' => 'sly', 'Sopen02g025330' => 'spe', 'Sopen06g031000' => 'spe', 'Sopen09g008240' => 'spe', 'Sopen09g025210' => 'spe', 'Sopen11g026600' => 'spe', 'Sopen11g030170' => 'spe', 'Sp1g10420' => 'spa', 'Sp3g06570' => 'spa', 'Sp4g10660' => 'spa', 'Sp5g16460' => 'spa', 'Sp6g22710' => 'spa', 'TAR365G0112' => 'tar', 'TAR369G0717' => 'tar', 'TAR374G0976' => 'tar', 'TAR623G1128' => 'tar', 'TAR626G1937' => 'tar', 'TAR627G0123' => 'tar', 'TAR628G0305' => 'tar', 'TAR636G1176' => 'tar', 'TAR636G2442' => 'tar', 'THA.LOC104800556' => 'tha', 'THA.LOC104809501' => 'tha', 'THA.LOC104815126' => 'tha', 'THA.LOC104815732' => 'tha', 'THA.LOC104823528' => 'tha', 'Thecc.02G365600' => 'tca', 'Thecc.06G222300' => 'tca', 'Thecc.09G261800' => 'tca', 'Thecc.09G291400' => 'tca', 'Thhalv10003028m.g' => 'esa', 'Thhalv10007886m.g' => 'esa', 'Thhalv10016085m.g' => 'esa', 'Thhalv10016681m.g' => 'esa', 'Thhalv10020951m.g' => 'esa', 'TPR.G15598' => 'tpr', 'TPR.G29305' => 'tpr', 'TPR.G32395' => 'tpr', 'TPR.G36998' => 'tpr', 'TPR.G4227' => 'tpr', 'TWI18G1433' => 'twi', 'TWI31G0755' => 'twi', 'TWI38G0912' => 'twi', 'TWI75G1097' => 'twi', 'TWI75G1619' => 'twi', 'TWI79G1336' => 'twi', 'unitig_0.g943' => 'ugi', 'unitig_0.g944' => 'ugi', 'unitig_22.g6646' => 'ugi', 'unitig_37.g12681' => 'ugi', 'unitig_8.g3290' => 'ugi', 'vmacro03278' => 'vma', 'vmacro12197' => 'vma', 'vmacro14478' => 'vma', 'vmacro15787' => 'vma', 'vmacro15789' => 'vma', 'vmacro15790' => 'vma', 'vmacro15806' => 'vma', 'vmacro22907' => 'vma', 'vmacro22908' => 'vma', 'vmacro22909' => 'vma', 'vmacro23108' => 'vma', 'VMungo0540G0540' => 'vmu', 'VMungo0540G2468' => 'vmu', 'VMungo1080G0390' => 'vmu', 'VMungo1080G1165' => 'vmu', 'VMungo1127G0170' => 'vmu', 'VMungo1127G2099' => 'vmu', 'VMungo1215G3013' => 'vmu', 'Zm00001eb013110' => 'zma', 'Zm00001eb084260' => 'zma', 'Zm00001eb096110' => 'zma', 'Zm00001eb217510' => 'zma', 'Zm00001eb322550' => 'zma', 'Zm00001eb390770' => 'zma', 'Zm00001eb397170' => 'zma', 'Zm00001eb404610' => 'zma', 'Zm00001eb421790' => 'zma' ), 'gf_id' => 'HOM05D000911', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000911' ), 'data_identifier' => 'HOM05D000911', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000911', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27780' => 'bna', 'A03p35380' => 'bna', 'A04p21160' => 'bna', 'A05p40570' => 'bna', 'A06p26900' => 'bna', 'A08p33230' => 'bna', 'A09p65960' => 'bna', 'A10p18290' => 'bna', 'Aa31LG1G12990' => 'aar', 'Aa31LG1G2980' => 'aar', 'Aa31LG4G14320' => 'aar', 'Aa31LG7G11800' => 'aar', 'Aa31sc36G50' => 'aar', 'Aa31sc36G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3721' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5459' => 'aag', 'Actinidia03028' => 'ach', 'Actinidia03753' => 'ach', 'Actinidia04187' => 'ach', 'Actinidia05509' => 'ach', 'Actinidia24180' => 'ach', 'Actinidia26906' => 'ach', 'Actinidia37097' => 'ach', 'Actinidia38249' => 'ach', 'Ah.01g003470' => 'amhyb', 'Ah.01g004580' => 'amhyb', 'Ah.01g014850' => 'amhyb', 'Ah.01g016830' => 'amhyb', 'Ah.14g088000' => 'amhyb', 'AL1G22980' => 'aly', 'AL3G18990' => 'aly', 'AL4G22440' => 'aly', 'AL4G33180' => 'aly', 'AL5G22920' => 'aly', 'AL6G33660' => 'aly', 'AL8G20720' => 'aly', 'Aqoxy1G00935' => 'aox', 'Aqoxy1G02094' => 'aox', 'Aqoxy2G01239' => 'aox', 'Aqoxy4G01870' => 'aox', 'Aqoxy7G00450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.36ZVTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71EM27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5D6C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH3WRE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3NCM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RIM768' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YB5YRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z36GDV' => 'arhy', 'AT1G08250' => 'ath', 'AT1G11790' => 'ath', 'AT2G27820' => 'ath', 'AT3G07630' => 'ath', 'AT3G44720' => 'ath', 'AT5G22630' => 'ath', 'ATR0693G304' => 'atr', 'ATR0794G109' => 'atr', 'ATR0820G120' => 'atr', 'ATR1159G064' => 'atr', 'Atru.chr10.2239' => 'acertr', 'Atru.chr3.3371' => 'acertr', 'Atru.chr6.3202' => 'acertr', 'AUR62006499' => 'cqu', 'AUR62012718' => 'cqu', 'AUR62021938' => 'cqu', 'AUR62023932' => 'cqu', 'AUR62025034' => 'cqu', 'AUR62025035' => 'cqu', 'AUR62038307' => 'cqu', 'AUR62043466' => 'cqu', 'BcaB02g10748' => 'bca', 'BcaB03g13231' => 'bca', 'BcaB03g14689' => 'bca', 'BcaB05g22716' => 'bca', 'BcaB06g28172' => 'bca', 'BcaB08g36413' => 'bca', 'BcaC01g02186' => 'bca', 'BcaC01g04272' => 'bca', 'BcaC02g08080' => 'bca', 'BcaC02g08227' => 'bca', 'BcaC03g13901' => 'bca', 'BcaC04g19593' => 'bca', 'BcaC04g20874' => 'bca', 'BcaC05g29557' => 'bca', 'BcaC06g35505' => 'bca', 'BcaC07g41954' => 'bca', 'BcaC07g41955' => 'bca', 'BcaC07g41956' => 'bca', 'BcaC07g42519' => 'bca', 'BcaC07g42520' => 'bca', 'BcaC07g42523' => 'bca', 'BcaC07g42524' => 'bca', 'BcaC07g42525' => 'bca', 'BcaC08g47480' => 'bca', 'BcaC08g47481' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00530' => 'bna', 'BolC2t07178H' => 'bol', 'BolC3t16567H' => 'bol', 'BolC4t27234H' => 'bol', 'BolC5t29728H' => 'bol', 'BolC5t34622H' => 'bol', 'BolC6t40321H' => 'bol', 'BolC7t42028H' => 'bol', 'BolC8t49125H' => 'bol', 'BolC8t52538H' => 'bol', 'BolC8t52539H' => 'bol', 'BolC9t56681H' => 'bol', 'BolC9t58266H' => 'bol', 'BolSC21t60294H' => 'bol', 'BraA02t05670Z' => 'bra', 'BraA03t12716Z' => 'bra', 'BraA04t17685Z' => 'bra', 'BraA05t22788Z' => 'bra', 'BraA06t24032Z' => 'bra', 'BraA06t25625Z' => 'bra', 'BraA07t27930Z' => 'bra', 'BraA08t35242Z' => 'bra', 'BraA09t38609Z' => 'bra', 'BraA10t43905Z' => 'bra', 'C02p11060' => 'bna', 'C03p42990' => 'bna', 'C03p67310' => 'bna', 'C04p56990' => 'bna', 'C04p58660' => 'bna', 'C05p09890' => 'bna', 'C05p59680' => 'bna', 'C06p19830' => 'bna', 'C06p53040' => 'bna', 'C07p15230' => 'bna', 'C08p50070' => 'bna', 'C08p50090' => 'bna', 'C09p38330' => 'bna', 'C09p53940' => 'bna', 'CAN.G1014.1' => 'can', 'CAN.G644.30' => 'can', 'CAN.G84.47' => 'can', 'CAN.G919.8' => 'can', 'CANSAT54G0113' => 'cansat', 'CANSAT54G1286' => 'cansat', 'CANSAT64G1020' => 'cansat', 'CARHR008080' => 'chi', 'CARHR008090' => 'chi', 'CARHR012130' => 'chi', 'CARHR038390' => 'chi', 'CARHR082330' => 'chi', 'CARHR120520' => 'chi', 'CARHR151470' => 'chi', 'CARHR190950' => 'chi', 'Carub.0001s0760' => 'cru', 'Carub.0001s1146' => 'cru', 'Carub.0003s0721' => 'cru', 'Carub.0004s0858' => 'cru', 'Carub.0005s1040' => 'cru', 'Carub.0006s2035' => 'cru', 'Carub.0015s0005' => 'cru', 'Ca_01607_v3' => 'car', 'Ca_01677_v3' => 'car', 'Ca_06087_v3' => 'car', 'Ca_19238_v3' => 'car', 'Ca_19373_v3' => 'car', 'Ca_21079_v3' => 'car', 'CBR_g54016' => 'cbr', 'CBR_g54018' => 'cbr', 'CBR_g54020' => 'cbr', 'Cc01_g09780' => 'ccan', 'Cc01_g11680' => 'ccan', 'Cc02_g15610' => 'ccan', 'Cc05_g04350' => 'ccan', 'Cc09_g01580' => 'ccan', 'CDE01G0795' => 'cde', 'CDE02G2024' => 'cde', 'CDE02G2260' => 'cde', 'CDE02G4561' => 'cde', 'CDE05G2733' => 'cde', 'CDE05G3422' => 'cde', 'CDE06G2003' => 'cde', 'CDE08G0576' => 'cde', 'CDE09G0048' => 'cde', 'CDE11G0805' => 'cde', 'Cfa003644' => 'cfa', 'Cfa006290' => 'cfa', 'Cfa010080' => 'cfa', 'Cfa011376' => 'cfa', 'Cfa011576' => 'cfa', 'Cfa011577' => 'cfa', 'Cfa014389' => 'cfa', 'Ciclev10006044m.g' => 'ccl', 'Ciclev10006954m.g' => 'ccl', 'Ciclev10015131m.g' => 'ccl', 'Ciclev10015580m.g' => 'ccl', 'Ciclev10028359m.g' => 'ccl', 'Ciclev10028573m.g' => 'ccl', 'CiPaw.03G159300' => 'cil', 'CiPaw.04G115100' => 'cil', 'CiPaw.09G092800' => 'cil', 'CiPaw.10G071800' => 'cil', 'CiPaw.13G105800' => 'cil', 'CiPaw.13G141000' => 'cil', 'CiPaw.14G103400' => 'cil', 'ClCG01G012700' => 'cla', 'ClCG01G012720' => 'cla', 'ClCG01G021920' => 'cla', 'ClCG02G008870' => 'cla', 'ClCG02G020840' => 'cla', 'ClCG02G021930' => 'cla', 'COL.COLO4_19302' => 'col', 'COL.COLO4_25262' => 'col', 'COL.COLO4_31788' => 'col', 'Cpa.g.c34684' => 'cpa', 'Cpa.g.c36520.1' => 'cpa', 'Cpa.g.c45626' => 'cpa', 'Cpa.g.sc121.17' => 'cpa', 'Cpa.g.sc13.22' => 'cpa', 'Cpa.g.sc87.88' => 'cpa', 'Cre06.g261800' => 'cre', 'CsaV3_1G014500' => 'csa', 'CsaV3_1G014510' => 'csa', 'CsaV3_2G034880' => 'csa', 'CsaV3_6G014760' => 'csa', 'CsaV3_6G021500' => 'csa', 'CsaV3_6G048980' => 'csa', 'CSS0002511' => 'camsi', 'CSS0007556' => 'camsi', 'CSS0008532' => 'camsi', 'CSS0009709' => 'camsi', 'CSS0010486' => 'camsi', 'CSS0016768' => 'camsi', 'CSS0023512' => 'camsi', 'CSS0025341' => 'camsi', 'CSS0027999' => 'camsi', 'CSS0028944' => 'camsi', 'CSS0032292' => 'camsi', 'CSS0032464' => 'camsi', 'CSS0037153' => 'camsi', 'CSS0039256' => 'camsi', 'CSS0048392' => 'camsi', 'CSS0050458' => 'camsi', 'DCAR_004224' => 'dca', 'DCAR_006147' => 'dca', 'DCAR_006465' => 'dca', 'DCAR_008159' => 'dca', 'DCAR_012164' => 'dca', 'DCAR_019764' => 'dca', 'Dinv05418' => 'din', 'Dinv10839' => 'din', 'Dinv12521' => 'din', 'Dinv13900' => 'din', 'Dinv29426' => 'din', 'Duzib150G0263' => 'dzi', 'Duzib168G1178' => 'dzi', 'Duzib168G1924' => 'dzi', 'Duzib170G0299' => 'dzi', 'Duzib170G0813' => 'dzi', 'Duzib235G1128' => 'dzi', 'Duzib248G1060' => 'dzi', 'ECA232G1910' => 'eca', 'ECA233G4621' => 'eca', 'ECA238G1216' => 'eca', 'ECA238G1784' => 'eca', 'ECA248G1242' => 'eca', 'EL10Ac8g20071' => 'bvu', 'EL10Ac9g21086' => 'bvu', 'EL10Ac9g22407' => 'bvu', 'EL10Ac9g22412' => 'bvu', 'Eucgr.A01119' => 'egr', 'Eucgr.E04043' => 'egr', 'Eucgr.J00428' => 'egr', 'Eucgr.J00958' => 'egr', 'FAN11G3091' => 'fan', 'FAN11G3651' => 'fan', 'FAN16G2566' => 'fan', 'FAN21G3155' => 'fan', 'FAN21G3400' => 'fan', 'FAN21G3543' => 'fan', 'FAN25G0234' => 'fan', 'FAN25G1422' => 'fan', 'FAN25G3392' => 'fan', 'FvH4_3g01940' => 'fve', 'FvH4_3g29870' => 'fve', 'FvH4_3g33680' => 'fve', 'Glyma.09G004200' => 'gma', 'Glyma.11G151288' => 'gma', 'Glyma.11G189100' => 'gma', 'Glyma.12G072500' => 'gma', 'Glyma.12G085500' => 'gma', 'Glyma.12G181800' => 'gma', 'Glyma.12G193000' => 'gma', 'Glyma.13G309300' => 'gma', 'Glyma.13G319000' => 'gma', 'Glyma.17G012600' => 'gma', 'Gohir.A06G148600' => 'ghi', 'Gohir.A07G115800' => 'ghi', 'Gohir.A08G003600' => 'ghi', 'Gohir.A09G093300' => 'ghi', 'Gohir.A09G105400' => 'ghi', 'Gohir.A09G105500' => 'ghi', 'Gohir.D06G154600' => 'ghi', 'Gohir.D07G120200' => 'ghi', 'Gohir.D08G013900' => 'ghi', 'Gohir.D09G093100' => 'ghi', 'Gohir.D09G102200' => 'ghi', 'Gohir.D09G102300' => 'ghi', 'Gorai.001G129400' => 'gra', 'Gorai.004G008200' => 'gra', 'Gorai.006G109800' => 'gra', 'Gorai.006G119500' => 'gra', 'Gorai.006G121300' => 'gra', 'Gorai.010G180700' => 'gra', 'GSVIVG01012716001' => 'vvi', 'GSVIVG01025118001' => 'vvi', 'GSVIVG01030439001' => 'vvi', 'GSVIVG01031397001' => 'vvi', 'HanXRQChr01g0004201' => 'han', 'HanXRQChr02g0054941' => 'han', 'HanXRQChr05g0141811' => 'han', 'HanXRQChr07g0197751' => 'han', 'HanXRQChr11g0346691' => 'han', 'HanXRQChr13g0396971' => 'han', 'HanXRQChr14g0432951' => 'han', 'HanXRQChr14g0452001' => 'han', 'HanXRQChr15g0496681' => 'han', 'HanXRQChr17g0557491' => 'han', 'HanXRQChr17g0557501' => 'han', 'Haze_06809' => 'cav', 'Haze_12852' => 'cav', 'Haze_15850' => 'cav', 'Haze_23446' => 'cav', 'Haze_23942' => 'cav', 'Haze_23943' => 'cav', 'Hma1.2p1_0091F.1_g046450' => 'hma', 'Hma1.2p1_0128F.1_g059910' => 'hma', 'Hma1.2p1_0249F.1_g102260' => 'hma', 'Hma1.2p1_0453F.1_g156190' => 'hma', 'Hma1.2p1_0695F.1_g204380' => 'hma', 'Hma1.2p1_0749F.1_g212650' => 'hma', 'Hma1.2p1_2156F.1_g315420' => 'hma', 'Hma1.2p1_2686F.1_g326940' => 'hma', 'HPP92_006428' => 'vpl', 'HPP92_012069' => 'vpl', 'HPP92_014129' => 'vpl', 'HPP92_014133' => 'vpl', 'HPP92_017315' => 'vpl', 'HPP92_026445' => 'vpl', 'HPP92_026446' => 'vpl', 'Hund00774' => 'sun', 'Hund07682' => 'sun', 'Hund21413' => 'sun', 'Hund23462' => 'sun', 'Hund23463' => 'sun', 'Lalb_Chr03g0027911' => 'lal', 'Lalb_Chr13g0304271' => 'lal', 'Lalb_Chr19g0137471' => 'lal', 'Lalb_Chr22g0350651' => 'lal', 'Lalb_Chr24g0395151' => 'lal', 'Lj1A1231T40' => 'lonja', 'Lj1A221T48' => 'lonja', 'Lj1C924T12' => 'lonja', 'Lj2C993G6' => 'lonja', 'Lj3g0005790' => 'lja', 'Lj3g0015432' => 'lja', 'Lj3g0017722' => 'lja', 'Lj3g0018497' => 'lja', 'Lj4g0025071' => 'lja', 'Lsat_1_v5_gn_1_129680' => 'lsa', 'Lsat_1_v5_gn_2_25321' => 'lsa', 'Lsat_1_v5_gn_2_95461' => 'lsa', 'Lsat_1_v5_gn_4_159620' => 'lsa', 'Lsat_1_v5_gn_6_41301' => 'lsa', 'Lsat_1_v5_gn_6_74660' => 'lsa', 'Lsat_1_v5_gn_7_11520' => 'lsa', 'Lsat_1_v5_gn_9_67680' => 'lsa', 'Manes.04G008300' => 'mes', 'Manes.04G008400' => 'mes', 'Manes.04G026500' => 'mes', 'Manes.10G135300' => 'mes', 'Manes.11G157300' => 'mes', 'Manes.12G074000' => 'mes', 'Manes.16G006200' => 'mes', 'Manes.17G026400' => 'mes', 'Mapoly0024s0086' => 'mpo', 'Mapoly0024s0087' => 'mpo', 'Mapoly0071s0057' => 'mpo', 'Mapoly0204s0012' => 'mpo', 'MBI04_g37681_MAGBIO' => 'mbi', 'MBI05_g17779_MAGBIO' => 'mbi', 'MBI12_g31184_MAGBIO' => 'mbi', 'MBI17_g11083_MAGBIO' => 'mbi', 'MBI18_g03883_MAGBIO' => 'mbi', 'MBI18_g28940_MAGBIO' => 'mbi', 'MCO01G690' => 'mco', 'MD03G1109900' => 'mdo', 'MD03G1134800' => 'mdo', 'MD05G1348000' => 'mdo', 'MD10G1322400' => 'mdo', 'MD11G1123300' => 'mdo', 'MD11G1157600' => 'mdo', 'Medtr2g084875' => 'mtr', 'Medtr2g088130' => 'mtr', 'Medtr4g055310' => 'mtr', 'Medtr4g061070' => 'mtr', 'Medtr4g132250' => 'mtr', 'MELO3C004795.2' => 'cme', 'MELO3C004797.2' => 'cme', 'MELO3C007396.2' => 'cme', 'MELO3C019277.2' => 'cme', 'MELO3C021449.2' => 'cme', 'MELO3C025736.2' => 'cme', 'Migut.D02175' => 'egut', 'Migut.H01573' => 'egut', 'Migut.M01327' => 'egut', 'Migut.N02513' => 'egut', 'MSTRG.14638' => 'ama', 'MSTRG.18632' => 'ama', 'MSTRG.7203' => 'ama', 'Nitab4.5_0000533g0140' => 'nta', 'Nitab4.5_0000888g0150' => 'nta', 'Nitab4.5_0001453g0040' => 'nta', 'Nitab4.5_0002827g0090' => 'nta', 'Nitab4.5_0003082g0040' => 'nta', 'Nitab4.5_0007799g0040' => 'nta', 'Nitab4.5_0008983g0010' => 'nta', 'Nitab4.5_0009017g0020' => 'nta', 'Nn1g02132' => 'nnu', 'Nn1g03492' => 'nnu', 'Nn1g03493' => 'nnu', 'Nn1g03494' => 'nnu', 'Nn1g07164' => 'nnu', 'Nn1g07291' => 'nnu', 'Nn2g10655' => 'nnu', 'Nn2g11652' => 'nnu', 'Nn2g14008' => 'nnu', 'Nn3g17476' => 'nnu', 'Nn3g17477' => 'nnu', 'Nn4g22370' => 'nnu', 'Nn4g25255' => 'nnu', 'Nn5g27755' => 'nnu', 'Nn6g34260' => 'nnu', 'Nn6g35041' => 'nnu', 'Oeu005924.1' => 'oeu', 'Oeu008383.1' => 'oeu', 'Oeu014928.1' => 'oeu', 'Oeu019889.1' => 'oeu', 'Oeu022271.1' => 'oeu', 'Oeu025271.1' => 'oeu', 'Oeu036302.1' => 'oeu', 'Oeu044100.1' => 'oeu', 'Os01g0528300' => 'osa', 'Os03g0286200' => 'osa', 'Os04g0406600' => 'osa', 'Os07g0512000' => 'osa', 'Os07g0694600' => 'osa', 'Os08g0411000' => 'osa', 'Os09g0565700' => 'osa', 'Os09g0566050' => 'osa', 'Os10g0523700' => 'osa', 'Peaxi162Scf00002g00514' => 'pax', 'Peaxi162Scf00047g01817' => 'pax', 'Peaxi162Scf00114g00001' => 'pax', 'Peaxi162Scf00147g00613' => 'pax', 'Peaxi162Scf00389g00425' => 'pax', 'PGR042G1139' => 'pgr', 'PGR042G3273' => 'pgr', 'PGR102G2180' => 'pgr', 'PGR119G0234' => 'pgr', 'PGR119G0668' => 'pgr', 'PGSC0003DMG400007122' => 'stu', 'PGSC0003DMG400016478' => 'stu', 'PGSC0003DMG400025374' => 'stu', 'PGSC0003DMG400026536' => 'stu', 'Phvul.003G079600' => 'pvu', 'Phvul.005G115600' => 'pvu', 'Phvul.005G127100' => 'pvu', 'Phvul.006G149500' => 'pvu', 'Phvul.006G149600' => 'pvu', 'Phvul.011G071800' => 'pvu', 'Phvul.011G090400' => 'pvu', 'Potri.004G013400' => 'ptr', 'Potri.004G188100' => 'ptr', 'Potri.008G195500' => 'ptr', 'Potri.009G148800' => 'ptr', 'Potri.011G004700' => 'ptr', 'Pp3c17_22810' => 'ppa', 'Pp3c18_4480' => 'ppa', 'Pp3c19_13030' => 'ppa', 'Pp3c1_33620' => 'ppa', 'Pp3c2_9380' => 'ppa', 'PRCOL_00001023' => 'pco', 'Prupe.3G216300' => 'ppe', 'Prupe.4G019500' => 'ppe', 'Prupe.6G092500' => 'ppe', 'Prupe.6G119200' => 'ppe', 'Psat0s1945g0080' => 'psa', 'Psat0s4167g0040' => 'psa', 'Psat1g185800' => 'psa', 'Psat4g006440' => 'psa', 'Psat4g006480' => 'psa', 'Psat4g168120' => 'psa', 'Psat5g255680' => 'psa', 'Psat5g261760' => 'psa', 'Psat7g222120' => 'psa', 'PSO063G7252' => 'pso', 'PSO170G4778' => 'pso', 'PSO210G2249' => 'pso', 'PSO339G2411' => 'pso', 'PSO339G2457' => 'pso', 'PSO339G2854' => 'pso', 'PSO339G4288' => 'pso', 'PSO339G4615' => 'pso', 'PSO384G2796' => 'pso', 'PSO384G2940' => 'pso', 'PSO384G4227' => 'pso', 'PSO478G1425' => 'pso', 'PSO541G3863' => 'pso', 'PSO675G0507' => 'pso', 'PSO782G0338' => 'pso', 'PSO832G0644' => 'pso', 'QL01p013664' => 'qlo', 'QL01p036598' => 'qlo', 'QL05p072984' => 'qlo', 'QL08p005768' => 'qlo', 'QL08p032743' => 'qlo', 'QL93p0073_0439' => 'qlo', 'QL93p0073_0444' => 'qlo', 'RcHm_v2.0_Chr5g0002851' => 'rch', 'RcHm_v2.0_Chr5g0055201' => 'rch', 'RcHm_v2.0_Chr5g0061191' => 'rch', 'RcHm_v2.0_Chr7g0203231' => 'rch', 'Rhsim01G0208100' => 'rsi', 'Rhsim01G0208200' => 'rsi', 'Rhsim02G0106500' => 'rsi', 'Rhsim03G0107900' => 'rsi', 'Rhsim06G0163400' => 'rsi', 'Rhsim13G0105200' => 'rsi', 'Sabra04G0006300' => 'sbr', 'Sabra04G0127000' => 'sbr', 'Sabra08G0148700' => 'sbr', 'Sabra09G0117400' => 'sbr', 'SalBow1G3326' => 'sbo', 'SalBow3G3228' => 'sbo', 'SalBow6G1634' => 'sbo', 'SalBow6G3603' => 'sbo', 'SalBow6G5266' => 'sbo', 'SalBow7G2265' => 'sbo', 'SalBow8G0850' => 'sbo', 'SalBow8G2592' => 'sbo', 'Sc05g0009240' => 'sci', 'Sc12g0002300' => 'sci', 'Sc21g0000100' => 'sci', 'Sc21g0004720' => 'sci', 'Sed0002949' => 'sed', 'Sed0004114' => 'sed', 'Sed0004306' => 'sed', 'Sed0006172' => 'sed', 'Sed0008413' => 'sed', 'Sed0013809' => 'sed', 'Sed0019556' => 'sed', 'SEGI_03570' => 'sgi', 'SEGI_07859' => 'sgi', 'SEGI_15042' => 'sgi', 'SEGI_16263' => 'sgi', 'SEGI_16552' => 'sgi', 'SEGI_24331' => 'sgi', 'SEGI_27316' => 'sgi', 'SEGI_29521' => 'sgi', 'SEGI_41342' => 'sgi', 'SGA_v2.0_scaffold27G11617' => 'sas', 'SGA_v2.0_scaffold316G48428' => 'sas', 'SGA_v2.0_scaffold49G18261' => 'sas', 'SGA_v2.0_scaffold7G03831' => 'sas', 'SGA_v2.0_scaffold93G28359' => 'sas', 'SHI02210' => 'shi', 'SHI06028' => 'shi', 'SHI06321' => 'shi', 'SMO111G0012' => 'smo', 'SMO228G0080' => 'smo', 'SMO356G0756' => 'smo', 'Solyc02g080620.3' => 'sly', 'Solyc06g074530.1' => 'sly', 'Solyc11g066890.1' => 'sly', 'Solyc11g072520.3' => 'sly', 'Sopen02g025330' => 'spe', 'Sopen06g031000' => 'spe', 'Sopen09g008240' => 'spe', 'Sopen09g025210' => 'spe', 'Sopen11g026600' => 'spe', 'Sopen11g030170' => 'spe', 'Sp1g10420' => 'spa', 'Sp3g06570' => 'spa', 'Sp4g10660' => 'spa', 'Sp5g16460' => 'spa', 'Sp6g22710' => 'spa', 'TAR365G0112' => 'tar', 'TAR369G0717' => 'tar', 'TAR374G0976' => 'tar', 'TAR623G1128' => 'tar', 'TAR626G1937' => 'tar', 'TAR627G0123' => 'tar', 'TAR628G0305' => 'tar', 'TAR636G1176' => 'tar', 'TAR636G2442' => 'tar', 'THA.LOC104800556' => 'tha', 'THA.LOC104809501' => 'tha', 'THA.LOC104815126' => 'tha', 'THA.LOC104815732' => 'tha', 'THA.LOC104823528' => 'tha', 'Thecc.02G365600' => 'tca', 'Thecc.06G222300' => 'tca', 'Thecc.09G261800' => 'tca', 'Thecc.09G291400' => 'tca', 'Thhalv10003028m.g' => 'esa', 'Thhalv10007886m.g' => 'esa', 'Thhalv10016085m.g' => 'esa', 'Thhalv10016681m.g' => 'esa', 'Thhalv10020951m.g' => 'esa', 'TPR.G15598' => 'tpr', 'TPR.G29305' => 'tpr', 'TPR.G32395' => 'tpr', 'TPR.G36998' => 'tpr', 'TPR.G4227' => 'tpr', 'TWI18G1433' => 'twi', 'TWI31G0755' => 'twi', 'TWI38G0912' => 'twi', 'TWI75G1097' => 'twi', 'TWI75G1619' => 'twi', 'TWI79G1336' => 'twi', 'unitig_0.g943' => 'ugi', 'unitig_0.g944' => 'ugi', 'unitig_22.g6646' => 'ugi', 'unitig_37.g12681' => 'ugi', 'unitig_8.g3290' => 'ugi', 'vmacro03278' => 'vma', 'vmacro12197' => 'vma', 'vmacro14478' => 'vma', 'vmacro15787' => 'vma', 'vmacro15789' => 'vma', 'vmacro15790' => 'vma', 'vmacro15806' => 'vma', 'vmacro22907' => 'vma', 'vmacro22908' => 'vma', 'vmacro22909' => 'vma', 'vmacro23108' => 'vma', 'VMungo0540G0540' => 'vmu', 'VMungo0540G2468' => 'vmu', 'VMungo1080G0390' => 'vmu', 'VMungo1080G1165' => 'vmu', 'VMungo1127G0170' => 'vmu', 'VMungo1127G2099' => 'vmu', 'VMungo1215G3013' => 'vmu', 'Zm00001eb013110' => 'zma', 'Zm00001eb084260' => 'zma', 'Zm00001eb096110' => 'zma', 'Zm00001eb217510' => 'zma', 'Zm00001eb322550' => 'zma', 'Zm00001eb390770' => 'zma', 'Zm00001eb397170' => 'zma', 'Zm00001eb404610' => 'zma', 'Zm00001eb421790' => 'zma' ) $gf_id = 'HOM05D000911' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000911' ) $data_identifier = 'HOM05D000911' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 16, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 5, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 6, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 8, 'nnu' => (int) 16, 'oeu' => (int) 8, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 5, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 16, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421790' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000911', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27780' => 'bna', 'A03p35380' => 'bna', 'A04p21160' => 'bna', 'A05p40570' => 'bna', 'A06p26900' => 'bna', 'A08p33230' => 'bna', 'A09p65960' => 'bna', 'A10p18290' => 'bna', 'Aa31LG1G12990' => 'aar', 'Aa31LG1G2980' => 'aar', 'Aa31LG4G14320' => 'aar', 'Aa31LG7G11800' => 'aar', 'Aa31sc36G50' => 'aar', 'Aa31sc36G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3721' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5459' => 'aag', 'Actinidia03028' => 'ach', 'Actinidia03753' => 'ach', 'Actinidia04187' => 'ach', 'Actinidia05509' => 'ach', 'Actinidia24180' => 'ach', 'Actinidia26906' => 'ach', 'Actinidia37097' => 'ach', 'Actinidia38249' => 'ach', 'Ah.01g003470' => 'amhyb', 'Ah.01g004580' => 'amhyb', 'Ah.01g014850' => 'amhyb', 'Ah.01g016830' => 'amhyb', 'Ah.14g088000' => 'amhyb', 'AL1G22980' => 'aly', 'AL3G18990' => 'aly', 'AL4G22440' => 'aly', 'AL4G33180' => 'aly', 'AL5G22920' => 'aly', 'AL6G33660' => 'aly', 'AL8G20720' => 'aly', 'Aqoxy1G00935' => 'aox', 'Aqoxy1G02094' => 'aox', 'Aqoxy2G01239' => 'aox', 'Aqoxy4G01870' => 'aox', 'Aqoxy7G00450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.36ZVTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71EM27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5D6C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH3WRE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3NCM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RIM768' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YB5YRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z36GDV' => 'arhy', 'AT1G08250' => 'ath', 'AT1G11790' => 'ath', 'AT2G27820' => 'ath', 'AT3G07630' => 'ath', 'AT3G44720' => 'ath', 'AT5G22630' => 'ath', 'ATR0693G304' => 'atr', 'ATR0794G109' => 'atr', 'ATR0820G120' => 'atr', 'ATR1159G064' => 'atr', 'Atru.chr10.2239' => 'acertr', 'Atru.chr3.3371' => 'acertr', 'Atru.chr6.3202' => 'acertr', 'AUR62006499' => 'cqu', 'AUR62012718' => 'cqu', 'AUR62021938' => 'cqu', 'AUR62023932' => 'cqu', 'AUR62025034' => 'cqu', 'AUR62025035' => 'cqu', 'AUR62038307' => 'cqu', 'AUR62043466' => 'cqu', 'BcaB02g10748' => 'bca', 'BcaB03g13231' => 'bca', 'BcaB03g14689' => 'bca', 'BcaB05g22716' => 'bca', 'BcaB06g28172' => 'bca', 'BcaB08g36413' => 'bca', 'BcaC01g02186' => 'bca', 'BcaC01g04272' => 'bca', 'BcaC02g08080' => 'bca', 'BcaC02g08227' => 'bca', 'BcaC03g13901' => 'bca', 'BcaC04g19593' => 'bca', 'BcaC04g20874' => 'bca', 'BcaC05g29557' => 'bca', 'BcaC06g35505' => 'bca', 'BcaC07g41954' => 'bca', 'BcaC07g41955' => 'bca', 'BcaC07g41956' => 'bca', 'BcaC07g42519' => 'bca', 'BcaC07g42520' => 'bca', 'BcaC07g42523' => 'bca', 'BcaC07g42524' => 'bca', 'BcaC07g42525' => 'bca', 'BcaC08g47480' => 'bca', 'BcaC08g47481' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00530' => 'bna', 'BolC2t07178H' => 'bol', 'BolC3t16567H' => 'bol', 'BolC4t27234H' => 'bol', 'BolC5t29728H' => 'bol', 'BolC5t34622H' => 'bol', 'BolC6t40321H' => 'bol', 'BolC7t42028H' => 'bol', 'BolC8t49125H' => 'bol', 'BolC8t52538H' => 'bol', 'BolC8t52539H' => 'bol', 'BolC9t56681H' => 'bol', 'BolC9t58266H' => 'bol', 'BolSC21t60294H' => 'bol', 'BraA02t05670Z' => 'bra', 'BraA03t12716Z' => 'bra', 'BraA04t17685Z' => 'bra', 'BraA05t22788Z' => 'bra', 'BraA06t24032Z' => 'bra', 'BraA06t25625Z' => 'bra', 'BraA07t27930Z' => 'bra', 'BraA08t35242Z' => 'bra', 'BraA09t38609Z' => 'bra', 'BraA10t43905Z' => 'bra', 'C02p11060' => 'bna', 'C03p42990' => 'bna', 'C03p67310' => 'bna', 'C04p56990' => 'bna', 'C04p58660' => 'bna', 'C05p09890' => 'bna', 'C05p59680' => 'bna', 'C06p19830' => 'bna', 'C06p53040' => 'bna', 'C07p15230' => 'bna', 'C08p50070' => 'bna', 'C08p50090' => 'bna', 'C09p38330' => 'bna', 'C09p53940' => 'bna', 'CAN.G1014.1' => 'can', 'CAN.G644.30' => 'can', 'CAN.G84.47' => 'can', 'CAN.G919.8' => 'can', 'CANSAT54G0113' => 'cansat', 'CANSAT54G1286' => 'cansat', 'CANSAT64G1020' => 'cansat', 'CARHR008080' => 'chi', 'CARHR008090' => 'chi', 'CARHR012130' => 'chi', 'CARHR038390' => 'chi', 'CARHR082330' => 'chi', 'CARHR120520' => 'chi', 'CARHR151470' => 'chi', 'CARHR190950' => 'chi', 'Carub.0001s0760' => 'cru', 'Carub.0001s1146' => 'cru', 'Carub.0003s0721' => 'cru', 'Carub.0004s0858' => 'cru', 'Carub.0005s1040' => 'cru', 'Carub.0006s2035' => 'cru', 'Carub.0015s0005' => 'cru', 'Ca_01607_v3' => 'car', 'Ca_01677_v3' => 'car', 'Ca_06087_v3' => 'car', 'Ca_19238_v3' => 'car', 'Ca_19373_v3' => 'car', 'Ca_21079_v3' => 'car', 'CBR_g54016' => 'cbr', 'CBR_g54018' => 'cbr', 'CBR_g54020' => 'cbr', 'Cc01_g09780' => 'ccan', 'Cc01_g11680' => 'ccan', 'Cc02_g15610' => 'ccan', 'Cc05_g04350' => 'ccan', 'Cc09_g01580' => 'ccan', 'CDE01G0795' => 'cde', 'CDE02G2024' => 'cde', 'CDE02G2260' => 'cde', 'CDE02G4561' => 'cde', 'CDE05G2733' => 'cde', 'CDE05G3422' => 'cde', 'CDE06G2003' => 'cde', 'CDE08G0576' => 'cde', 'CDE09G0048' => 'cde', 'CDE11G0805' => 'cde', 'Cfa003644' => 'cfa', 'Cfa006290' => 'cfa', 'Cfa010080' => 'cfa', 'Cfa011376' => 'cfa', 'Cfa011576' => 'cfa', 'Cfa011577' => 'cfa', 'Cfa014389' => 'cfa', 'Ciclev10006044m.g' => 'ccl', 'Ciclev10006954m.g' => 'ccl', 'Ciclev10015131m.g' => 'ccl', 'Ciclev10015580m.g' => 'ccl', 'Ciclev10028359m.g' => 'ccl', 'Ciclev10028573m.g' => 'ccl', 'CiPaw.03G159300' => 'cil', 'CiPaw.04G115100' => 'cil', 'CiPaw.09G092800' => 'cil', 'CiPaw.10G071800' => 'cil', 'CiPaw.13G105800' => 'cil', 'CiPaw.13G141000' => 'cil', 'CiPaw.14G103400' => 'cil', 'ClCG01G012700' => 'cla', 'ClCG01G012720' => 'cla', 'ClCG01G021920' => 'cla', 'ClCG02G008870' => 'cla', 'ClCG02G020840' => 'cla', 'ClCG02G021930' => 'cla', 'COL.COLO4_19302' => 'col', 'COL.COLO4_25262' => 'col', 'COL.COLO4_31788' => 'col', 'Cpa.g.c34684' => 'cpa', 'Cpa.g.c36520.1' => 'cpa', 'Cpa.g.c45626' => 'cpa', 'Cpa.g.sc121.17' => 'cpa', 'Cpa.g.sc13.22' => 'cpa', 'Cpa.g.sc87.88' => 'cpa', 'Cre06.g261800' => 'cre', 'CsaV3_1G014500' => 'csa', 'CsaV3_1G014510' => 'csa', 'CsaV3_2G034880' => 'csa', 'CsaV3_6G014760' => 'csa', 'CsaV3_6G021500' => 'csa', 'CsaV3_6G048980' => 'csa', 'CSS0002511' => 'camsi', 'CSS0007556' => 'camsi', 'CSS0008532' => 'camsi', 'CSS0009709' => 'camsi', 'CSS0010486' => 'camsi', 'CSS0016768' => 'camsi', 'CSS0023512' => 'camsi', 'CSS0025341' => 'camsi', 'CSS0027999' => 'camsi', 'CSS0028944' => 'camsi', 'CSS0032292' => 'camsi', 'CSS0032464' => 'camsi', 'CSS0037153' => 'camsi', 'CSS0039256' => 'camsi', 'CSS0048392' => 'camsi', 'CSS0050458' => 'camsi', 'DCAR_004224' => 'dca', 'DCAR_006147' => 'dca', 'DCAR_006465' => 'dca', 'DCAR_008159' => 'dca', 'DCAR_012164' => 'dca', 'DCAR_019764' => 'dca', 'Dinv05418' => 'din', 'Dinv10839' => 'din', 'Dinv12521' => 'din', 'Dinv13900' => 'din', 'Dinv29426' => 'din', 'Duzib150G0263' => 'dzi', 'Duzib168G1178' => 'dzi', 'Duzib168G1924' => 'dzi', 'Duzib170G0299' => 'dzi', 'Duzib170G0813' => 'dzi', 'Duzib235G1128' => 'dzi', 'Duzib248G1060' => 'dzi', 'ECA232G1910' => 'eca', 'ECA233G4621' => 'eca', 'ECA238G1216' => 'eca', 'ECA238G1784' => 'eca', 'ECA248G1242' => 'eca', 'EL10Ac8g20071' => 'bvu', 'EL10Ac9g21086' => 'bvu', 'EL10Ac9g22407' => 'bvu', 'EL10Ac9g22412' => 'bvu', 'Eucgr.A01119' => 'egr', 'Eucgr.E04043' => 'egr', 'Eucgr.J00428' => 'egr', 'Eucgr.J00958' => 'egr', 'FAN11G3091' => 'fan', 'FAN11G3651' => 'fan', 'FAN16G2566' => 'fan', 'FAN21G3155' => 'fan', 'FAN21G3400' => 'fan', 'FAN21G3543' => 'fan', 'FAN25G0234' => 'fan', 'FAN25G1422' => 'fan', 'FAN25G3392' => 'fan', 'FvH4_3g01940' => 'fve', 'FvH4_3g29870' => 'fve', 'FvH4_3g33680' => 'fve', 'Glyma.09G004200' => 'gma', 'Glyma.11G151288' => 'gma', 'Glyma.11G189100' => 'gma', 'Glyma.12G072500' => 'gma', 'Glyma.12G085500' => 'gma', 'Glyma.12G181800' => 'gma', 'Glyma.12G193000' => 'gma', 'Glyma.13G309300' => 'gma', 'Glyma.13G319000' => 'gma', 'Glyma.17G012600' => 'gma', 'Gohir.A06G148600' => 'ghi', 'Gohir.A07G115800' => 'ghi', 'Gohir.A08G003600' => 'ghi', 'Gohir.A09G093300' => 'ghi', 'Gohir.A09G105400' => 'ghi', 'Gohir.A09G105500' => 'ghi', 'Gohir.D06G154600' => 'ghi', 'Gohir.D07G120200' => 'ghi', 'Gohir.D08G013900' => 'ghi', 'Gohir.D09G093100' => 'ghi', 'Gohir.D09G102200' => 'ghi', 'Gohir.D09G102300' => 'ghi', 'Gorai.001G129400' => 'gra', 'Gorai.004G008200' => 'gra', 'Gorai.006G109800' => 'gra', 'Gorai.006G119500' => 'gra', 'Gorai.006G121300' => 'gra', 'Gorai.010G180700' => 'gra', 'GSVIVG01012716001' => 'vvi', 'GSVIVG01025118001' => 'vvi', 'GSVIVG01030439001' => 'vvi', 'GSVIVG01031397001' => 'vvi', 'HanXRQChr01g0004201' => 'han', 'HanXRQChr02g0054941' => 'han', 'HanXRQChr05g0141811' => 'han', 'HanXRQChr07g0197751' => 'han', 'HanXRQChr11g0346691' => 'han', 'HanXRQChr13g0396971' => 'han', 'HanXRQChr14g0432951' => 'han', 'HanXRQChr14g0452001' => 'han', 'HanXRQChr15g0496681' => 'han', 'HanXRQChr17g0557491' => 'han', 'HanXRQChr17g0557501' => 'han', 'Haze_06809' => 'cav', 'Haze_12852' => 'cav', 'Haze_15850' => 'cav', 'Haze_23446' => 'cav', 'Haze_23942' => 'cav', 'Haze_23943' => 'cav', 'Hma1.2p1_0091F.1_g046450' => 'hma', 'Hma1.2p1_0128F.1_g059910' => 'hma', 'Hma1.2p1_0249F.1_g102260' => 'hma', 'Hma1.2p1_0453F.1_g156190' => 'hma', 'Hma1.2p1_0695F.1_g204380' => 'hma', 'Hma1.2p1_0749F.1_g212650' => 'hma', 'Hma1.2p1_2156F.1_g315420' => 'hma', 'Hma1.2p1_2686F.1_g326940' => 'hma', 'HPP92_006428' => 'vpl', 'HPP92_012069' => 'vpl', 'HPP92_014129' => 'vpl', 'HPP92_014133' => 'vpl', 'HPP92_017315' => 'vpl', 'HPP92_026445' => 'vpl', 'HPP92_026446' => 'vpl', 'Hund00774' => 'sun', 'Hund07682' => 'sun', 'Hund21413' => 'sun', 'Hund23462' => 'sun', 'Hund23463' => 'sun', 'Lalb_Chr03g0027911' => 'lal', 'Lalb_Chr13g0304271' => 'lal', 'Lalb_Chr19g0137471' => 'lal', 'Lalb_Chr22g0350651' => 'lal', 'Lalb_Chr24g0395151' => 'lal', 'Lj1A1231T40' => 'lonja', 'Lj1A221T48' => 'lonja', 'Lj1C924T12' => 'lonja', 'Lj2C993G6' => 'lonja', 'Lj3g0005790' => 'lja', 'Lj3g0015432' => 'lja', 'Lj3g0017722' => 'lja', 'Lj3g0018497' => 'lja', 'Lj4g0025071' => 'lja', 'Lsat_1_v5_gn_1_129680' => 'lsa', 'Lsat_1_v5_gn_2_25321' => 'lsa', 'Lsat_1_v5_gn_2_95461' => 'lsa', 'Lsat_1_v5_gn_4_159620' => 'lsa', 'Lsat_1_v5_gn_6_41301' => 'lsa', 'Lsat_1_v5_gn_6_74660' => 'lsa', 'Lsat_1_v5_gn_7_11520' => 'lsa', 'Lsat_1_v5_gn_9_67680' => 'lsa', 'Manes.04G008300' => 'mes', 'Manes.04G008400' => 'mes', 'Manes.04G026500' => 'mes', 'Manes.10G135300' => 'mes', 'Manes.11G157300' => 'mes', 'Manes.12G074000' => 'mes', 'Manes.16G006200' => 'mes', 'Manes.17G026400' => 'mes', 'Mapoly0024s0086' => 'mpo', 'Mapoly0024s0087' => 'mpo', 'Mapoly0071s0057' => 'mpo', 'Mapoly0204s0012' => 'mpo', 'MBI04_g37681_MAGBIO' => 'mbi', 'MBI05_g17779_MAGBIO' => 'mbi', 'MBI12_g31184_MAGBIO' => 'mbi', 'MBI17_g11083_MAGBIO' => 'mbi', 'MBI18_g03883_MAGBIO' => 'mbi', 'MBI18_g28940_MAGBIO' => 'mbi', 'MCO01G690' => 'mco', 'MD03G1109900' => 'mdo', 'MD03G1134800' => 'mdo', 'MD05G1348000' => 'mdo', 'MD10G1322400' => 'mdo', 'MD11G1123300' => 'mdo', 'MD11G1157600' => 'mdo', 'Medtr2g084875' => 'mtr', 'Medtr2g088130' => 'mtr', 'Medtr4g055310' => 'mtr', 'Medtr4g061070' => 'mtr', 'Medtr4g132250' => 'mtr', 'MELO3C004795.2' => 'cme', 'MELO3C004797.2' => 'cme', 'MELO3C007396.2' => 'cme', 'MELO3C019277.2' => 'cme', 'MELO3C021449.2' => 'cme', 'MELO3C025736.2' => 'cme', 'Migut.D02175' => 'egut', 'Migut.H01573' => 'egut', 'Migut.M01327' => 'egut', 'Migut.N02513' => 'egut', 'MSTRG.14638' => 'ama', 'MSTRG.18632' => 'ama', 'MSTRG.7203' => 'ama', 'Nitab4.5_0000533g0140' => 'nta', 'Nitab4.5_0000888g0150' => 'nta', 'Nitab4.5_0001453g0040' => 'nta', 'Nitab4.5_0002827g0090' => 'nta', 'Nitab4.5_0003082g0040' => 'nta', 'Nitab4.5_0007799g0040' => 'nta', 'Nitab4.5_0008983g0010' => 'nta', 'Nitab4.5_0009017g0020' => 'nta', 'Nn1g02132' => 'nnu', 'Nn1g03492' => 'nnu', 'Nn1g03493' => 'nnu', 'Nn1g03494' => 'nnu', 'Nn1g07164' => 'nnu', 'Nn1g07291' => 'nnu', 'Nn2g10655' => 'nnu', 'Nn2g11652' => 'nnu', 'Nn2g14008' => 'nnu', 'Nn3g17476' => 'nnu', 'Nn3g17477' => 'nnu', 'Nn4g22370' => 'nnu', 'Nn4g25255' => 'nnu', 'Nn5g27755' => 'nnu', 'Nn6g34260' => 'nnu', 'Nn6g35041' => 'nnu', 'Oeu005924.1' => 'oeu', 'Oeu008383.1' => 'oeu', 'Oeu014928.1' => 'oeu', 'Oeu019889.1' => 'oeu', 'Oeu022271.1' => 'oeu', 'Oeu025271.1' => 'oeu', 'Oeu036302.1' => 'oeu', 'Oeu044100.1' => 'oeu', 'Os01g0528300' => 'osa', 'Os03g0286200' => 'osa', 'Os04g0406600' => 'osa', 'Os07g0512000' => 'osa', 'Os07g0694600' => 'osa', 'Os08g0411000' => 'osa', 'Os09g0565700' => 'osa', 'Os09g0566050' => 'osa', 'Os10g0523700' => 'osa', 'Peaxi162Scf00002g00514' => 'pax', 'Peaxi162Scf00047g01817' => 'pax', 'Peaxi162Scf00114g00001' => 'pax', 'Peaxi162Scf00147g00613' => 'pax', 'Peaxi162Scf00389g00425' => 'pax', 'PGR042G1139' => 'pgr', 'PGR042G3273' => 'pgr', 'PGR102G2180' => 'pgr', 'PGR119G0234' => 'pgr', 'PGR119G0668' => 'pgr', 'PGSC0003DMG400007122' => 'stu', 'PGSC0003DMG400016478' => 'stu', 'PGSC0003DMG400025374' => 'stu', 'PGSC0003DMG400026536' => 'stu', 'Phvul.003G079600' => 'pvu', 'Phvul.005G115600' => 'pvu', 'Phvul.005G127100' => 'pvu', 'Phvul.006G149500' => 'pvu', 'Phvul.006G149600' => 'pvu', 'Phvul.011G071800' => 'pvu', 'Phvul.011G090400' => 'pvu', 'Potri.004G013400' => 'ptr', 'Potri.004G188100' => 'ptr', 'Potri.008G195500' => 'ptr', 'Potri.009G148800' => 'ptr', 'Potri.011G004700' => 'ptr', 'Pp3c17_22810' => 'ppa', 'Pp3c18_4480' => 'ppa', 'Pp3c19_13030' => 'ppa', 'Pp3c1_33620' => 'ppa', 'Pp3c2_9380' => 'ppa', 'PRCOL_00001023' => 'pco', 'Prupe.3G216300' => 'ppe', 'Prupe.4G019500' => 'ppe', 'Prupe.6G092500' => 'ppe', 'Prupe.6G119200' => 'ppe', 'Psat0s1945g0080' => 'psa', 'Psat0s4167g0040' => 'psa', 'Psat1g185800' => 'psa', 'Psat4g006440' => 'psa', 'Psat4g006480' => 'psa', 'Psat4g168120' => 'psa', 'Psat5g255680' => 'psa', 'Psat5g261760' => 'psa', 'Psat7g222120' => 'psa', 'PSO063G7252' => 'pso', 'PSO170G4778' => 'pso', 'PSO210G2249' => 'pso', 'PSO339G2411' => 'pso', 'PSO339G2457' => 'pso', 'PSO339G2854' => 'pso', 'PSO339G4288' => 'pso', 'PSO339G4615' => 'pso', 'PSO384G2796' => 'pso', 'PSO384G2940' => 'pso', 'PSO384G4227' => 'pso', 'PSO478G1425' => 'pso', 'PSO541G3863' => 'pso', 'PSO675G0507' => 'pso', 'PSO782G0338' => 'pso', 'PSO832G0644' => 'pso', 'QL01p013664' => 'qlo', 'QL01p036598' => 'qlo', 'QL05p072984' => 'qlo', 'QL08p005768' => 'qlo', 'QL08p032743' => 'qlo', 'QL93p0073_0439' => 'qlo', 'QL93p0073_0444' => 'qlo', 'RcHm_v2.0_Chr5g0002851' => 'rch', 'RcHm_v2.0_Chr5g0055201' => 'rch', 'RcHm_v2.0_Chr5g0061191' => 'rch', 'RcHm_v2.0_Chr7g0203231' => 'rch', 'Rhsim01G0208100' => 'rsi', 'Rhsim01G0208200' => 'rsi', 'Rhsim02G0106500' => 'rsi', 'Rhsim03G0107900' => 'rsi', 'Rhsim06G0163400' => 'rsi', 'Rhsim13G0105200' => 'rsi', 'Sabra04G0006300' => 'sbr', 'Sabra04G0127000' => 'sbr', 'Sabra08G0148700' => 'sbr', 'Sabra09G0117400' => 'sbr', 'SalBow1G3326' => 'sbo', 'SalBow3G3228' => 'sbo', 'SalBow6G1634' => 'sbo', 'SalBow6G3603' => 'sbo', 'SalBow6G5266' => 'sbo', 'SalBow7G2265' => 'sbo', 'SalBow8G0850' => 'sbo', 'SalBow8G2592' => 'sbo', 'Sc05g0009240' => 'sci', 'Sc12g0002300' => 'sci', 'Sc21g0000100' => 'sci', 'Sc21g0004720' => 'sci', 'Sed0002949' => 'sed', 'Sed0004114' => 'sed', 'Sed0004306' => 'sed', 'Sed0006172' => 'sed', 'Sed0008413' => 'sed', 'Sed0013809' => 'sed', 'Sed0019556' => 'sed', 'SEGI_03570' => 'sgi', 'SEGI_07859' => 'sgi', 'SEGI_15042' => 'sgi', 'SEGI_16263' => 'sgi', 'SEGI_16552' => 'sgi', 'SEGI_24331' => 'sgi', 'SEGI_27316' => 'sgi', 'SEGI_29521' => 'sgi', 'SEGI_41342' => 'sgi', 'SGA_v2.0_scaffold27G11617' => 'sas', 'SGA_v2.0_scaffold316G48428' => 'sas', 'SGA_v2.0_scaffold49G18261' => 'sas', 'SGA_v2.0_scaffold7G03831' => 'sas', 'SGA_v2.0_scaffold93G28359' => 'sas', 'SHI02210' => 'shi', 'SHI06028' => 'shi', 'SHI06321' => 'shi', 'SMO111G0012' => 'smo', 'SMO228G0080' => 'smo', 'SMO356G0756' => 'smo', 'Solyc02g080620.3' => 'sly', 'Solyc06g074530.1' => 'sly', 'Solyc11g066890.1' => 'sly', 'Solyc11g072520.3' => 'sly', 'Sopen02g025330' => 'spe', 'Sopen06g031000' => 'spe', 'Sopen09g008240' => 'spe', 'Sopen09g025210' => 'spe', 'Sopen11g026600' => 'spe', 'Sopen11g030170' => 'spe', 'Sp1g10420' => 'spa', 'Sp3g06570' => 'spa', 'Sp4g10660' => 'spa', 'Sp5g16460' => 'spa', 'Sp6g22710' => 'spa', 'TAR365G0112' => 'tar', 'TAR369G0717' => 'tar', 'TAR374G0976' => 'tar', 'TAR623G1128' => 'tar', 'TAR626G1937' => 'tar', 'TAR627G0123' => 'tar', 'TAR628G0305' => 'tar', 'TAR636G1176' => 'tar', 'TAR636G2442' => 'tar', 'THA.LOC104800556' => 'tha', 'THA.LOC104809501' => 'tha', 'THA.LOC104815126' => 'tha', 'THA.LOC104815732' => 'tha', 'THA.LOC104823528' => 'tha', 'Thecc.02G365600' => 'tca', 'Thecc.06G222300' => 'tca', 'Thecc.09G261800' => 'tca', 'Thecc.09G291400' => 'tca', 'Thhalv10003028m.g' => 'esa', 'Thhalv10007886m.g' => 'esa', 'Thhalv10016085m.g' => 'esa', 'Thhalv10016681m.g' => 'esa', 'Thhalv10020951m.g' => 'esa', 'TPR.G15598' => 'tpr', 'TPR.G29305' => 'tpr', 'TPR.G32395' => 'tpr', 'TPR.G36998' => 'tpr', 'TPR.G4227' => 'tpr', 'TWI18G1433' => 'twi', 'TWI31G0755' => 'twi', 'TWI38G0912' => 'twi', 'TWI75G1097' => 'twi', 'TWI75G1619' => 'twi', 'TWI79G1336' => 'twi', 'unitig_0.g943' => 'ugi', 'unitig_0.g944' => 'ugi', 'unitig_22.g6646' => 'ugi', 'unitig_37.g12681' => 'ugi', 'unitig_8.g3290' => 'ugi', 'vmacro03278' => 'vma', 'vmacro12197' => 'vma', 'vmacro14478' => 'vma', 'vmacro15787' => 'vma', 'vmacro15789' => 'vma', 'vmacro15790' => 'vma', 'vmacro15806' => 'vma', 'vmacro22907' => 'vma', 'vmacro22908' => 'vma', 'vmacro22909' => 'vma', 'vmacro23108' => 'vma', 'VMungo0540G0540' => 'vmu', 'VMungo0540G2468' => 'vmu', 'VMungo1080G0390' => 'vmu', 'VMungo1080G1165' => 'vmu', 'VMungo1127G0170' => 'vmu', 'VMungo1127G2099' => 'vmu', 'VMungo1215G3013' => 'vmu', 'Zm00001eb013110' => 'zma', 'Zm00001eb084260' => 'zma', 'Zm00001eb096110' => 'zma', 'Zm00001eb217510' => 'zma', 'Zm00001eb322550' => 'zma', 'Zm00001eb390770' => 'zma', 'Zm00001eb397170' => 'zma', 'Zm00001eb404610' => 'zma', 'Zm00001eb421790' => 'zma' ), 'gf_id' => 'HOM05D000911', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000911' ), 'data_identifier' => 'HOM05D000911', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000911', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27780' => 'bna', 'A03p35380' => 'bna', 'A04p21160' => 'bna', 'A05p40570' => 'bna', 'A06p26900' => 'bna', 'A08p33230' => 'bna', 'A09p65960' => 'bna', 'A10p18290' => 'bna', 'Aa31LG1G12990' => 'aar', 'Aa31LG1G2980' => 'aar', 'Aa31LG4G14320' => 'aar', 'Aa31LG7G11800' => 'aar', 'Aa31sc36G50' => 'aar', 'Aa31sc36G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3721' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5459' => 'aag', 'Actinidia03028' => 'ach', 'Actinidia03753' => 'ach', 'Actinidia04187' => 'ach', 'Actinidia05509' => 'ach', 'Actinidia24180' => 'ach', 'Actinidia26906' => 'ach', 'Actinidia37097' => 'ach', 'Actinidia38249' => 'ach', 'Ah.01g003470' => 'amhyb', 'Ah.01g004580' => 'amhyb', 'Ah.01g014850' => 'amhyb', 'Ah.01g016830' => 'amhyb', 'Ah.14g088000' => 'amhyb', 'AL1G22980' => 'aly', 'AL3G18990' => 'aly', 'AL4G22440' => 'aly', 'AL4G33180' => 'aly', 'AL5G22920' => 'aly', 'AL6G33660' => 'aly', 'AL8G20720' => 'aly', 'Aqoxy1G00935' => 'aox', 'Aqoxy1G02094' => 'aox', 'Aqoxy2G01239' => 'aox', 'Aqoxy4G01870' => 'aox', 'Aqoxy7G00450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.36ZVTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71EM27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5D6C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH3WRE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3NCM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RIM768' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YB5YRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z36GDV' => 'arhy', 'AT1G08250' => 'ath', 'AT1G11790' => 'ath', 'AT2G27820' => 'ath', 'AT3G07630' => 'ath', 'AT3G44720' => 'ath', 'AT5G22630' => 'ath', 'ATR0693G304' => 'atr', 'ATR0794G109' => 'atr', 'ATR0820G120' => 'atr', 'ATR1159G064' => 'atr', 'Atru.chr10.2239' => 'acertr', 'Atru.chr3.3371' => 'acertr', 'Atru.chr6.3202' => 'acertr', 'AUR62006499' => 'cqu', 'AUR62012718' => 'cqu', 'AUR62021938' => 'cqu', 'AUR62023932' => 'cqu', 'AUR62025034' => 'cqu', 'AUR62025035' => 'cqu', 'AUR62038307' => 'cqu', 'AUR62043466' => 'cqu', 'BcaB02g10748' => 'bca', 'BcaB03g13231' => 'bca', 'BcaB03g14689' => 'bca', 'BcaB05g22716' => 'bca', 'BcaB06g28172' => 'bca', 'BcaB08g36413' => 'bca', 'BcaC01g02186' => 'bca', 'BcaC01g04272' => 'bca', 'BcaC02g08080' => 'bca', 'BcaC02g08227' => 'bca', 'BcaC03g13901' => 'bca', 'BcaC04g19593' => 'bca', 'BcaC04g20874' => 'bca', 'BcaC05g29557' => 'bca', 'BcaC06g35505' => 'bca', 'BcaC07g41954' => 'bca', 'BcaC07g41955' => 'bca', 'BcaC07g41956' => 'bca', 'BcaC07g42519' => 'bca', 'BcaC07g42520' => 'bca', 'BcaC07g42523' => 'bca', 'BcaC07g42524' => 'bca', 'BcaC07g42525' => 'bca', 'BcaC08g47480' => 'bca', 'BcaC08g47481' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00530' => 'bna', 'BolC2t07178H' => 'bol', 'BolC3t16567H' => 'bol', 'BolC4t27234H' => 'bol', 'BolC5t29728H' => 'bol', 'BolC5t34622H' => 'bol', 'BolC6t40321H' => 'bol', 'BolC7t42028H' => 'bol', 'BolC8t49125H' => 'bol', 'BolC8t52538H' => 'bol', 'BolC8t52539H' => 'bol', 'BolC9t56681H' => 'bol', 'BolC9t58266H' => 'bol', 'BolSC21t60294H' => 'bol', 'BraA02t05670Z' => 'bra', 'BraA03t12716Z' => 'bra', 'BraA04t17685Z' => 'bra', 'BraA05t22788Z' => 'bra', 'BraA06t24032Z' => 'bra', 'BraA06t25625Z' => 'bra', 'BraA07t27930Z' => 'bra', 'BraA08t35242Z' => 'bra', 'BraA09t38609Z' => 'bra', 'BraA10t43905Z' => 'bra', 'C02p11060' => 'bna', 'C03p42990' => 'bna', 'C03p67310' => 'bna', 'C04p56990' => 'bna', 'C04p58660' => 'bna', 'C05p09890' => 'bna', 'C05p59680' => 'bna', 'C06p19830' => 'bna', 'C06p53040' => 'bna', 'C07p15230' => 'bna', 'C08p50070' => 'bna', 'C08p50090' => 'bna', 'C09p38330' => 'bna', 'C09p53940' => 'bna', 'CAN.G1014.1' => 'can', 'CAN.G644.30' => 'can', 'CAN.G84.47' => 'can', 'CAN.G919.8' => 'can', 'CANSAT54G0113' => 'cansat', 'CANSAT54G1286' => 'cansat', 'CANSAT64G1020' => 'cansat', 'CARHR008080' => 'chi', 'CARHR008090' => 'chi', 'CARHR012130' => 'chi', 'CARHR038390' => 'chi', 'CARHR082330' => 'chi', 'CARHR120520' => 'chi', 'CARHR151470' => 'chi', 'CARHR190950' => 'chi', 'Carub.0001s0760' => 'cru', 'Carub.0001s1146' => 'cru', 'Carub.0003s0721' => 'cru', 'Carub.0004s0858' => 'cru', 'Carub.0005s1040' => 'cru', 'Carub.0006s2035' => 'cru', 'Carub.0015s0005' => 'cru', 'Ca_01607_v3' => 'car', 'Ca_01677_v3' => 'car', 'Ca_06087_v3' => 'car', 'Ca_19238_v3' => 'car', 'Ca_19373_v3' => 'car', 'Ca_21079_v3' => 'car', 'CBR_g54016' => 'cbr', 'CBR_g54018' => 'cbr', 'CBR_g54020' => 'cbr', 'Cc01_g09780' => 'ccan', 'Cc01_g11680' => 'ccan', 'Cc02_g15610' => 'ccan', 'Cc05_g04350' => 'ccan', 'Cc09_g01580' => 'ccan', 'CDE01G0795' => 'cde', 'CDE02G2024' => 'cde', 'CDE02G2260' => 'cde', 'CDE02G4561' => 'cde', 'CDE05G2733' => 'cde', 'CDE05G3422' => 'cde', 'CDE06G2003' => 'cde', 'CDE08G0576' => 'cde', 'CDE09G0048' => 'cde', 'CDE11G0805' => 'cde', 'Cfa003644' => 'cfa', 'Cfa006290' => 'cfa', 'Cfa010080' => 'cfa', 'Cfa011376' => 'cfa', 'Cfa011576' => 'cfa', 'Cfa011577' => 'cfa', 'Cfa014389' => 'cfa', 'Ciclev10006044m.g' => 'ccl', 'Ciclev10006954m.g' => 'ccl', 'Ciclev10015131m.g' => 'ccl', 'Ciclev10015580m.g' => 'ccl', 'Ciclev10028359m.g' => 'ccl', 'Ciclev10028573m.g' => 'ccl', 'CiPaw.03G159300' => 'cil', 'CiPaw.04G115100' => 'cil', 'CiPaw.09G092800' => 'cil', 'CiPaw.10G071800' => 'cil', 'CiPaw.13G105800' => 'cil', 'CiPaw.13G141000' => 'cil', 'CiPaw.14G103400' => 'cil', 'ClCG01G012700' => 'cla', 'ClCG01G012720' => 'cla', 'ClCG01G021920' => 'cla', 'ClCG02G008870' => 'cla', 'ClCG02G020840' => 'cla', 'ClCG02G021930' => 'cla', 'COL.COLO4_19302' => 'col', 'COL.COLO4_25262' => 'col', 'COL.COLO4_31788' => 'col', 'Cpa.g.c34684' => 'cpa', 'Cpa.g.c36520.1' => 'cpa', 'Cpa.g.c45626' => 'cpa', 'Cpa.g.sc121.17' => 'cpa', 'Cpa.g.sc13.22' => 'cpa', 'Cpa.g.sc87.88' => 'cpa', 'Cre06.g261800' => 'cre', 'CsaV3_1G014500' => 'csa', 'CsaV3_1G014510' => 'csa', 'CsaV3_2G034880' => 'csa', 'CsaV3_6G014760' => 'csa', 'CsaV3_6G021500' => 'csa', 'CsaV3_6G048980' => 'csa', 'CSS0002511' => 'camsi', 'CSS0007556' => 'camsi', 'CSS0008532' => 'camsi', 'CSS0009709' => 'camsi', 'CSS0010486' => 'camsi', 'CSS0016768' => 'camsi', 'CSS0023512' => 'camsi', 'CSS0025341' => 'camsi', 'CSS0027999' => 'camsi', 'CSS0028944' => 'camsi', 'CSS0032292' => 'camsi', 'CSS0032464' => 'camsi', 'CSS0037153' => 'camsi', 'CSS0039256' => 'camsi', 'CSS0048392' => 'camsi', 'CSS0050458' => 'camsi', 'DCAR_004224' => 'dca', 'DCAR_006147' => 'dca', 'DCAR_006465' => 'dca', 'DCAR_008159' => 'dca', 'DCAR_012164' => 'dca', 'DCAR_019764' => 'dca', 'Dinv05418' => 'din', 'Dinv10839' => 'din', 'Dinv12521' => 'din', 'Dinv13900' => 'din', 'Dinv29426' => 'din', 'Duzib150G0263' => 'dzi', 'Duzib168G1178' => 'dzi', 'Duzib168G1924' => 'dzi', 'Duzib170G0299' => 'dzi', 'Duzib170G0813' => 'dzi', 'Duzib235G1128' => 'dzi', 'Duzib248G1060' => 'dzi', 'ECA232G1910' => 'eca', 'ECA233G4621' => 'eca', 'ECA238G1216' => 'eca', 'ECA238G1784' => 'eca', 'ECA248G1242' => 'eca', 'EL10Ac8g20071' => 'bvu', 'EL10Ac9g21086' => 'bvu', 'EL10Ac9g22407' => 'bvu', 'EL10Ac9g22412' => 'bvu', 'Eucgr.A01119' => 'egr', 'Eucgr.E04043' => 'egr', 'Eucgr.J00428' => 'egr', 'Eucgr.J00958' => 'egr', 'FAN11G3091' => 'fan', 'FAN11G3651' => 'fan', 'FAN16G2566' => 'fan', 'FAN21G3155' => 'fan', 'FAN21G3400' => 'fan', 'FAN21G3543' => 'fan', 'FAN25G0234' => 'fan', 'FAN25G1422' => 'fan', 'FAN25G3392' => 'fan', 'FvH4_3g01940' => 'fve', 'FvH4_3g29870' => 'fve', 'FvH4_3g33680' => 'fve', 'Glyma.09G004200' => 'gma', 'Glyma.11G151288' => 'gma', 'Glyma.11G189100' => 'gma', 'Glyma.12G072500' => 'gma', 'Glyma.12G085500' => 'gma', 'Glyma.12G181800' => 'gma', 'Glyma.12G193000' => 'gma', 'Glyma.13G309300' => 'gma', 'Glyma.13G319000' => 'gma', 'Glyma.17G012600' => 'gma', 'Gohir.A06G148600' => 'ghi', 'Gohir.A07G115800' => 'ghi', 'Gohir.A08G003600' => 'ghi', 'Gohir.A09G093300' => 'ghi', 'Gohir.A09G105400' => 'ghi', 'Gohir.A09G105500' => 'ghi', 'Gohir.D06G154600' => 'ghi', 'Gohir.D07G120200' => 'ghi', 'Gohir.D08G013900' => 'ghi', 'Gohir.D09G093100' => 'ghi', 'Gohir.D09G102200' => 'ghi', 'Gohir.D09G102300' => 'ghi', 'Gorai.001G129400' => 'gra', 'Gorai.004G008200' => 'gra', 'Gorai.006G109800' => 'gra', 'Gorai.006G119500' => 'gra', 'Gorai.006G121300' => 'gra', 'Gorai.010G180700' => 'gra', 'GSVIVG01012716001' => 'vvi', 'GSVIVG01025118001' => 'vvi', 'GSVIVG01030439001' => 'vvi', 'GSVIVG01031397001' => 'vvi', 'HanXRQChr01g0004201' => 'han', 'HanXRQChr02g0054941' => 'han', 'HanXRQChr05g0141811' => 'han', 'HanXRQChr07g0197751' => 'han', 'HanXRQChr11g0346691' => 'han', 'HanXRQChr13g0396971' => 'han', 'HanXRQChr14g0432951' => 'han', 'HanXRQChr14g0452001' => 'han', 'HanXRQChr15g0496681' => 'han', 'HanXRQChr17g0557491' => 'han', 'HanXRQChr17g0557501' => 'han', 'Haze_06809' => 'cav', 'Haze_12852' => 'cav', 'Haze_15850' => 'cav', 'Haze_23446' => 'cav', 'Haze_23942' => 'cav', 'Haze_23943' => 'cav', 'Hma1.2p1_0091F.1_g046450' => 'hma', 'Hma1.2p1_0128F.1_g059910' => 'hma', 'Hma1.2p1_0249F.1_g102260' => 'hma', 'Hma1.2p1_0453F.1_g156190' => 'hma', 'Hma1.2p1_0695F.1_g204380' => 'hma', 'Hma1.2p1_0749F.1_g212650' => 'hma', 'Hma1.2p1_2156F.1_g315420' => 'hma', 'Hma1.2p1_2686F.1_g326940' => 'hma', 'HPP92_006428' => 'vpl', 'HPP92_012069' => 'vpl', 'HPP92_014129' => 'vpl', 'HPP92_014133' => 'vpl', 'HPP92_017315' => 'vpl', 'HPP92_026445' => 'vpl', 'HPP92_026446' => 'vpl', 'Hund00774' => 'sun', 'Hund07682' => 'sun', 'Hund21413' => 'sun', 'Hund23462' => 'sun', 'Hund23463' => 'sun', 'Lalb_Chr03g0027911' => 'lal', 'Lalb_Chr13g0304271' => 'lal', 'Lalb_Chr19g0137471' => 'lal', 'Lalb_Chr22g0350651' => 'lal', 'Lalb_Chr24g0395151' => 'lal', 'Lj1A1231T40' => 'lonja', 'Lj1A221T48' => 'lonja', 'Lj1C924T12' => 'lonja', 'Lj2C993G6' => 'lonja', 'Lj3g0005790' => 'lja', 'Lj3g0015432' => 'lja', 'Lj3g0017722' => 'lja', 'Lj3g0018497' => 'lja', 'Lj4g0025071' => 'lja', 'Lsat_1_v5_gn_1_129680' => 'lsa', 'Lsat_1_v5_gn_2_25321' => 'lsa', 'Lsat_1_v5_gn_2_95461' => 'lsa', 'Lsat_1_v5_gn_4_159620' => 'lsa', 'Lsat_1_v5_gn_6_41301' => 'lsa', 'Lsat_1_v5_gn_6_74660' => 'lsa', 'Lsat_1_v5_gn_7_11520' => 'lsa', 'Lsat_1_v5_gn_9_67680' => 'lsa', 'Manes.04G008300' => 'mes', 'Manes.04G008400' => 'mes', 'Manes.04G026500' => 'mes', 'Manes.10G135300' => 'mes', 'Manes.11G157300' => 'mes', 'Manes.12G074000' => 'mes', 'Manes.16G006200' => 'mes', 'Manes.17G026400' => 'mes', 'Mapoly0024s0086' => 'mpo', 'Mapoly0024s0087' => 'mpo', 'Mapoly0071s0057' => 'mpo', 'Mapoly0204s0012' => 'mpo', 'MBI04_g37681_MAGBIO' => 'mbi', 'MBI05_g17779_MAGBIO' => 'mbi', 'MBI12_g31184_MAGBIO' => 'mbi', 'MBI17_g11083_MAGBIO' => 'mbi', 'MBI18_g03883_MAGBIO' => 'mbi', 'MBI18_g28940_MAGBIO' => 'mbi', 'MCO01G690' => 'mco', 'MD03G1109900' => 'mdo', 'MD03G1134800' => 'mdo', 'MD05G1348000' => 'mdo', 'MD10G1322400' => 'mdo', 'MD11G1123300' => 'mdo', 'MD11G1157600' => 'mdo', 'Medtr2g084875' => 'mtr', 'Medtr2g088130' => 'mtr', 'Medtr4g055310' => 'mtr', 'Medtr4g061070' => 'mtr', 'Medtr4g132250' => 'mtr', 'MELO3C004795.2' => 'cme', 'MELO3C004797.2' => 'cme', 'MELO3C007396.2' => 'cme', 'MELO3C019277.2' => 'cme', 'MELO3C021449.2' => 'cme', 'MELO3C025736.2' => 'cme', 'Migut.D02175' => 'egut', 'Migut.H01573' => 'egut', 'Migut.M01327' => 'egut', 'Migut.N02513' => 'egut', 'MSTRG.14638' => 'ama', 'MSTRG.18632' => 'ama', 'MSTRG.7203' => 'ama', 'Nitab4.5_0000533g0140' => 'nta', 'Nitab4.5_0000888g0150' => 'nta', 'Nitab4.5_0001453g0040' => 'nta', 'Nitab4.5_0002827g0090' => 'nta', 'Nitab4.5_0003082g0040' => 'nta', 'Nitab4.5_0007799g0040' => 'nta', 'Nitab4.5_0008983g0010' => 'nta', 'Nitab4.5_0009017g0020' => 'nta', 'Nn1g02132' => 'nnu', 'Nn1g03492' => 'nnu', 'Nn1g03493' => 'nnu', 'Nn1g03494' => 'nnu', 'Nn1g07164' => 'nnu', 'Nn1g07291' => 'nnu', 'Nn2g10655' => 'nnu', 'Nn2g11652' => 'nnu', 'Nn2g14008' => 'nnu', 'Nn3g17476' => 'nnu', 'Nn3g17477' => 'nnu', 'Nn4g22370' => 'nnu', 'Nn4g25255' => 'nnu', 'Nn5g27755' => 'nnu', 'Nn6g34260' => 'nnu', 'Nn6g35041' => 'nnu', 'Oeu005924.1' => 'oeu', 'Oeu008383.1' => 'oeu', 'Oeu014928.1' => 'oeu', 'Oeu019889.1' => 'oeu', 'Oeu022271.1' => 'oeu', 'Oeu025271.1' => 'oeu', 'Oeu036302.1' => 'oeu', 'Oeu044100.1' => 'oeu', 'Os01g0528300' => 'osa', 'Os03g0286200' => 'osa', 'Os04g0406600' => 'osa', 'Os07g0512000' => 'osa', 'Os07g0694600' => 'osa', 'Os08g0411000' => 'osa', 'Os09g0565700' => 'osa', 'Os09g0566050' => 'osa', 'Os10g0523700' => 'osa', 'Peaxi162Scf00002g00514' => 'pax', 'Peaxi162Scf00047g01817' => 'pax', 'Peaxi162Scf00114g00001' => 'pax', 'Peaxi162Scf00147g00613' => 'pax', 'Peaxi162Scf00389g00425' => 'pax', 'PGR042G1139' => 'pgr', 'PGR042G3273' => 'pgr', 'PGR102G2180' => 'pgr', 'PGR119G0234' => 'pgr', 'PGR119G0668' => 'pgr', 'PGSC0003DMG400007122' => 'stu', 'PGSC0003DMG400016478' => 'stu', 'PGSC0003DMG400025374' => 'stu', 'PGSC0003DMG400026536' => 'stu', 'Phvul.003G079600' => 'pvu', 'Phvul.005G115600' => 'pvu', 'Phvul.005G127100' => 'pvu', 'Phvul.006G149500' => 'pvu', 'Phvul.006G149600' => 'pvu', 'Phvul.011G071800' => 'pvu', 'Phvul.011G090400' => 'pvu', 'Potri.004G013400' => 'ptr', 'Potri.004G188100' => 'ptr', 'Potri.008G195500' => 'ptr', 'Potri.009G148800' => 'ptr', 'Potri.011G004700' => 'ptr', 'Pp3c17_22810' => 'ppa', 'Pp3c18_4480' => 'ppa', 'Pp3c19_13030' => 'ppa', 'Pp3c1_33620' => 'ppa', 'Pp3c2_9380' => 'ppa', 'PRCOL_00001023' => 'pco', 'Prupe.3G216300' => 'ppe', 'Prupe.4G019500' => 'ppe', 'Prupe.6G092500' => 'ppe', 'Prupe.6G119200' => 'ppe', 'Psat0s1945g0080' => 'psa', 'Psat0s4167g0040' => 'psa', 'Psat1g185800' => 'psa', 'Psat4g006440' => 'psa', 'Psat4g006480' => 'psa', 'Psat4g168120' => 'psa', 'Psat5g255680' => 'psa', 'Psat5g261760' => 'psa', 'Psat7g222120' => 'psa', 'PSO063G7252' => 'pso', 'PSO170G4778' => 'pso', 'PSO210G2249' => 'pso', 'PSO339G2411' => 'pso', 'PSO339G2457' => 'pso', 'PSO339G2854' => 'pso', 'PSO339G4288' => 'pso', 'PSO339G4615' => 'pso', 'PSO384G2796' => 'pso', 'PSO384G2940' => 'pso', 'PSO384G4227' => 'pso', 'PSO478G1425' => 'pso', 'PSO541G3863' => 'pso', 'PSO675G0507' => 'pso', 'PSO782G0338' => 'pso', 'PSO832G0644' => 'pso', 'QL01p013664' => 'qlo', 'QL01p036598' => 'qlo', 'QL05p072984' => 'qlo', 'QL08p005768' => 'qlo', 'QL08p032743' => 'qlo', 'QL93p0073_0439' => 'qlo', 'QL93p0073_0444' => 'qlo', 'RcHm_v2.0_Chr5g0002851' => 'rch', 'RcHm_v2.0_Chr5g0055201' => 'rch', 'RcHm_v2.0_Chr5g0061191' => 'rch', 'RcHm_v2.0_Chr7g0203231' => 'rch', 'Rhsim01G0208100' => 'rsi', 'Rhsim01G0208200' => 'rsi', 'Rhsim02G0106500' => 'rsi', 'Rhsim03G0107900' => 'rsi', 'Rhsim06G0163400' => 'rsi', 'Rhsim13G0105200' => 'rsi', 'Sabra04G0006300' => 'sbr', 'Sabra04G0127000' => 'sbr', 'Sabra08G0148700' => 'sbr', 'Sabra09G0117400' => 'sbr', 'SalBow1G3326' => 'sbo', 'SalBow3G3228' => 'sbo', 'SalBow6G1634' => 'sbo', 'SalBow6G3603' => 'sbo', 'SalBow6G5266' => 'sbo', 'SalBow7G2265' => 'sbo', 'SalBow8G0850' => 'sbo', 'SalBow8G2592' => 'sbo', 'Sc05g0009240' => 'sci', 'Sc12g0002300' => 'sci', 'Sc21g0000100' => 'sci', 'Sc21g0004720' => 'sci', 'Sed0002949' => 'sed', 'Sed0004114' => 'sed', 'Sed0004306' => 'sed', 'Sed0006172' => 'sed', 'Sed0008413' => 'sed', 'Sed0013809' => 'sed', 'Sed0019556' => 'sed', 'SEGI_03570' => 'sgi', 'SEGI_07859' => 'sgi', 'SEGI_15042' => 'sgi', 'SEGI_16263' => 'sgi', 'SEGI_16552' => 'sgi', 'SEGI_24331' => 'sgi', 'SEGI_27316' => 'sgi', 'SEGI_29521' => 'sgi', 'SEGI_41342' => 'sgi', 'SGA_v2.0_scaffold27G11617' => 'sas', 'SGA_v2.0_scaffold316G48428' => 'sas', 'SGA_v2.0_scaffold49G18261' => 'sas', 'SGA_v2.0_scaffold7G03831' => 'sas', 'SGA_v2.0_scaffold93G28359' => 'sas', 'SHI02210' => 'shi', 'SHI06028' => 'shi', 'SHI06321' => 'shi', 'SMO111G0012' => 'smo', 'SMO228G0080' => 'smo', 'SMO356G0756' => 'smo', 'Solyc02g080620.3' => 'sly', 'Solyc06g074530.1' => 'sly', 'Solyc11g066890.1' => 'sly', 'Solyc11g072520.3' => 'sly', 'Sopen02g025330' => 'spe', 'Sopen06g031000' => 'spe', 'Sopen09g008240' => 'spe', 'Sopen09g025210' => 'spe', 'Sopen11g026600' => 'spe', 'Sopen11g030170' => 'spe', 'Sp1g10420' => 'spa', 'Sp3g06570' => 'spa', 'Sp4g10660' => 'spa', 'Sp5g16460' => 'spa', 'Sp6g22710' => 'spa', 'TAR365G0112' => 'tar', 'TAR369G0717' => 'tar', 'TAR374G0976' => 'tar', 'TAR623G1128' => 'tar', 'TAR626G1937' => 'tar', 'TAR627G0123' => 'tar', 'TAR628G0305' => 'tar', 'TAR636G1176' => 'tar', 'TAR636G2442' => 'tar', 'THA.LOC104800556' => 'tha', 'THA.LOC104809501' => 'tha', 'THA.LOC104815126' => 'tha', 'THA.LOC104815732' => 'tha', 'THA.LOC104823528' => 'tha', 'Thecc.02G365600' => 'tca', 'Thecc.06G222300' => 'tca', 'Thecc.09G261800' => 'tca', 'Thecc.09G291400' => 'tca', 'Thhalv10003028m.g' => 'esa', 'Thhalv10007886m.g' => 'esa', 'Thhalv10016085m.g' => 'esa', 'Thhalv10016681m.g' => 'esa', 'Thhalv10020951m.g' => 'esa', 'TPR.G15598' => 'tpr', 'TPR.G29305' => 'tpr', 'TPR.G32395' => 'tpr', 'TPR.G36998' => 'tpr', 'TPR.G4227' => 'tpr', 'TWI18G1433' => 'twi', 'TWI31G0755' => 'twi', 'TWI38G0912' => 'twi', 'TWI75G1097' => 'twi', 'TWI75G1619' => 'twi', 'TWI79G1336' => 'twi', 'unitig_0.g943' => 'ugi', 'unitig_0.g944' => 'ugi', 'unitig_22.g6646' => 'ugi', 'unitig_37.g12681' => 'ugi', 'unitig_8.g3290' => 'ugi', 'vmacro03278' => 'vma', 'vmacro12197' => 'vma', 'vmacro14478' => 'vma', 'vmacro15787' => 'vma', 'vmacro15789' => 'vma', 'vmacro15790' => 'vma', 'vmacro15806' => 'vma', 'vmacro22907' => 'vma', 'vmacro22908' => 'vma', 'vmacro22909' => 'vma', 'vmacro23108' => 'vma', 'VMungo0540G0540' => 'vmu', 'VMungo0540G2468' => 'vmu', 'VMungo1080G0390' => 'vmu', 'VMungo1080G1165' => 'vmu', 'VMungo1127G0170' => 'vmu', 'VMungo1127G2099' => 'vmu', 'VMungo1215G3013' => 'vmu', 'Zm00001eb013110' => 'zma', 'Zm00001eb084260' => 'zma', 'Zm00001eb096110' => 'zma', 'Zm00001eb217510' => 'zma', 'Zm00001eb322550' => 'zma', 'Zm00001eb390770' => 'zma', 'Zm00001eb397170' => 'zma', 'Zm00001eb404610' => 'zma', 'Zm00001eb421790' => 'zma' ) $gf_id = 'HOM05D000911' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000911' ) $data_identifier = 'HOM05D000911' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 16, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 5, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 6, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 8, 'nnu' => (int) 16, 'oeu' => (int) 8, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 5, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 16, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421790' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000911', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27780' => 'bna', 'A03p35380' => 'bna', 'A04p21160' => 'bna', 'A05p40570' => 'bna', 'A06p26900' => 'bna', 'A08p33230' => 'bna', 'A09p65960' => 'bna', 'A10p18290' => 'bna', 'Aa31LG1G12990' => 'aar', 'Aa31LG1G2980' => 'aar', 'Aa31LG4G14320' => 'aar', 'Aa31LG7G11800' => 'aar', 'Aa31sc36G50' => 'aar', 'Aa31sc36G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3721' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5459' => 'aag', 'Actinidia03028' => 'ach', 'Actinidia03753' => 'ach', 'Actinidia04187' => 'ach', 'Actinidia05509' => 'ach', 'Actinidia24180' => 'ach', 'Actinidia26906' => 'ach', 'Actinidia37097' => 'ach', 'Actinidia38249' => 'ach', 'Ah.01g003470' => 'amhyb', 'Ah.01g004580' => 'amhyb', 'Ah.01g014850' => 'amhyb', 'Ah.01g016830' => 'amhyb', 'Ah.14g088000' => 'amhyb', 'AL1G22980' => 'aly', 'AL3G18990' => 'aly', 'AL4G22440' => 'aly', 'AL4G33180' => 'aly', 'AL5G22920' => 'aly', 'AL6G33660' => 'aly', 'AL8G20720' => 'aly', 'Aqoxy1G00935' => 'aox', 'Aqoxy1G02094' => 'aox', 'Aqoxy2G01239' => 'aox', 'Aqoxy4G01870' => 'aox', 'Aqoxy7G00450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.36ZVTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71EM27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5D6C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH3WRE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3NCM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RIM768' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YB5YRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z36GDV' => 'arhy', 'AT1G08250' => 'ath', 'AT1G11790' => 'ath', 'AT2G27820' => 'ath', 'AT3G07630' => 'ath', 'AT3G44720' => 'ath', 'AT5G22630' => 'ath', 'ATR0693G304' => 'atr', 'ATR0794G109' => 'atr', 'ATR0820G120' => 'atr', 'ATR1159G064' => 'atr', 'Atru.chr10.2239' => 'acertr', 'Atru.chr3.3371' => 'acertr', 'Atru.chr6.3202' => 'acertr', 'AUR62006499' => 'cqu', 'AUR62012718' => 'cqu', 'AUR62021938' => 'cqu', 'AUR62023932' => 'cqu', 'AUR62025034' => 'cqu', 'AUR62025035' => 'cqu', 'AUR62038307' => 'cqu', 'AUR62043466' => 'cqu', 'BcaB02g10748' => 'bca', 'BcaB03g13231' => 'bca', 'BcaB03g14689' => 'bca', 'BcaB05g22716' => 'bca', 'BcaB06g28172' => 'bca', 'BcaB08g36413' => 'bca', 'BcaC01g02186' => 'bca', 'BcaC01g04272' => 'bca', 'BcaC02g08080' => 'bca', 'BcaC02g08227' => 'bca', 'BcaC03g13901' => 'bca', 'BcaC04g19593' => 'bca', 'BcaC04g20874' => 'bca', 'BcaC05g29557' => 'bca', 'BcaC06g35505' => 'bca', 'BcaC07g41954' => 'bca', 'BcaC07g41955' => 'bca', 'BcaC07g41956' => 'bca', 'BcaC07g42519' => 'bca', 'BcaC07g42520' => 'bca', 'BcaC07g42523' => 'bca', 'BcaC07g42524' => 'bca', 'BcaC07g42525' => 'bca', 'BcaC08g47480' => 'bca', 'BcaC08g47481' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00530' => 'bna', 'BolC2t07178H' => 'bol', 'BolC3t16567H' => 'bol', 'BolC4t27234H' => 'bol', 'BolC5t29728H' => 'bol', 'BolC5t34622H' => 'bol', 'BolC6t40321H' => 'bol', 'BolC7t42028H' => 'bol', 'BolC8t49125H' => 'bol', 'BolC8t52538H' => 'bol', 'BolC8t52539H' => 'bol', 'BolC9t56681H' => 'bol', 'BolC9t58266H' => 'bol', 'BolSC21t60294H' => 'bol', 'BraA02t05670Z' => 'bra', 'BraA03t12716Z' => 'bra', 'BraA04t17685Z' => 'bra', 'BraA05t22788Z' => 'bra', 'BraA06t24032Z' => 'bra', 'BraA06t25625Z' => 'bra', 'BraA07t27930Z' => 'bra', 'BraA08t35242Z' => 'bra', 'BraA09t38609Z' => 'bra', 'BraA10t43905Z' => 'bra', 'C02p11060' => 'bna', 'C03p42990' => 'bna', 'C03p67310' => 'bna', 'C04p56990' => 'bna', 'C04p58660' => 'bna', 'C05p09890' => 'bna', 'C05p59680' => 'bna', 'C06p19830' => 'bna', 'C06p53040' => 'bna', 'C07p15230' => 'bna', 'C08p50070' => 'bna', 'C08p50090' => 'bna', 'C09p38330' => 'bna', 'C09p53940' => 'bna', 'CAN.G1014.1' => 'can', 'CAN.G644.30' => 'can', 'CAN.G84.47' => 'can', 'CAN.G919.8' => 'can', 'CANSAT54G0113' => 'cansat', 'CANSAT54G1286' => 'cansat', 'CANSAT64G1020' => 'cansat', 'CARHR008080' => 'chi', 'CARHR008090' => 'chi', 'CARHR012130' => 'chi', 'CARHR038390' => 'chi', 'CARHR082330' => 'chi', 'CARHR120520' => 'chi', 'CARHR151470' => 'chi', 'CARHR190950' => 'chi', 'Carub.0001s0760' => 'cru', 'Carub.0001s1146' => 'cru', 'Carub.0003s0721' => 'cru', 'Carub.0004s0858' => 'cru', 'Carub.0005s1040' => 'cru', 'Carub.0006s2035' => 'cru', 'Carub.0015s0005' => 'cru', 'Ca_01607_v3' => 'car', 'Ca_01677_v3' => 'car', 'Ca_06087_v3' => 'car', 'Ca_19238_v3' => 'car', 'Ca_19373_v3' => 'car', 'Ca_21079_v3' => 'car', 'CBR_g54016' => 'cbr', 'CBR_g54018' => 'cbr', 'CBR_g54020' => 'cbr', 'Cc01_g09780' => 'ccan', 'Cc01_g11680' => 'ccan', 'Cc02_g15610' => 'ccan', 'Cc05_g04350' => 'ccan', 'Cc09_g01580' => 'ccan', 'CDE01G0795' => 'cde', 'CDE02G2024' => 'cde', 'CDE02G2260' => 'cde', 'CDE02G4561' => 'cde', 'CDE05G2733' => 'cde', 'CDE05G3422' => 'cde', 'CDE06G2003' => 'cde', 'CDE08G0576' => 'cde', 'CDE09G0048' => 'cde', 'CDE11G0805' => 'cde', 'Cfa003644' => 'cfa', 'Cfa006290' => 'cfa', 'Cfa010080' => 'cfa', 'Cfa011376' => 'cfa', 'Cfa011576' => 'cfa', 'Cfa011577' => 'cfa', 'Cfa014389' => 'cfa', 'Ciclev10006044m.g' => 'ccl', 'Ciclev10006954m.g' => 'ccl', 'Ciclev10015131m.g' => 'ccl', 'Ciclev10015580m.g' => 'ccl', 'Ciclev10028359m.g' => 'ccl', 'Ciclev10028573m.g' => 'ccl', 'CiPaw.03G159300' => 'cil', 'CiPaw.04G115100' => 'cil', 'CiPaw.09G092800' => 'cil', 'CiPaw.10G071800' => 'cil', 'CiPaw.13G105800' => 'cil', 'CiPaw.13G141000' => 'cil', 'CiPaw.14G103400' => 'cil', 'ClCG01G012700' => 'cla', 'ClCG01G012720' => 'cla', 'ClCG01G021920' => 'cla', 'ClCG02G008870' => 'cla', 'ClCG02G020840' => 'cla', 'ClCG02G021930' => 'cla', 'COL.COLO4_19302' => 'col', 'COL.COLO4_25262' => 'col', 'COL.COLO4_31788' => 'col', 'Cpa.g.c34684' => 'cpa', 'Cpa.g.c36520.1' => 'cpa', 'Cpa.g.c45626' => 'cpa', 'Cpa.g.sc121.17' => 'cpa', 'Cpa.g.sc13.22' => 'cpa', 'Cpa.g.sc87.88' => 'cpa', 'Cre06.g261800' => 'cre', 'CsaV3_1G014500' => 'csa', 'CsaV3_1G014510' => 'csa', 'CsaV3_2G034880' => 'csa', 'CsaV3_6G014760' => 'csa', 'CsaV3_6G021500' => 'csa', 'CsaV3_6G048980' => 'csa', 'CSS0002511' => 'camsi', 'CSS0007556' => 'camsi', 'CSS0008532' => 'camsi', 'CSS0009709' => 'camsi', 'CSS0010486' => 'camsi', 'CSS0016768' => 'camsi', 'CSS0023512' => 'camsi', 'CSS0025341' => 'camsi', 'CSS0027999' => 'camsi', 'CSS0028944' => 'camsi', 'CSS0032292' => 'camsi', 'CSS0032464' => 'camsi', 'CSS0037153' => 'camsi', 'CSS0039256' => 'camsi', 'CSS0048392' => 'camsi', 'CSS0050458' => 'camsi', 'DCAR_004224' => 'dca', 'DCAR_006147' => 'dca', 'DCAR_006465' => 'dca', 'DCAR_008159' => 'dca', 'DCAR_012164' => 'dca', 'DCAR_019764' => 'dca', 'Dinv05418' => 'din', 'Dinv10839' => 'din', 'Dinv12521' => 'din', 'Dinv13900' => 'din', 'Dinv29426' => 'din', 'Duzib150G0263' => 'dzi', 'Duzib168G1178' => 'dzi', 'Duzib168G1924' => 'dzi', 'Duzib170G0299' => 'dzi', 'Duzib170G0813' => 'dzi', 'Duzib235G1128' => 'dzi', 'Duzib248G1060' => 'dzi', 'ECA232G1910' => 'eca', 'ECA233G4621' => 'eca', 'ECA238G1216' => 'eca', 'ECA238G1784' => 'eca', 'ECA248G1242' => 'eca', 'EL10Ac8g20071' => 'bvu', 'EL10Ac9g21086' => 'bvu', 'EL10Ac9g22407' => 'bvu', 'EL10Ac9g22412' => 'bvu', 'Eucgr.A01119' => 'egr', 'Eucgr.E04043' => 'egr', 'Eucgr.J00428' => 'egr', 'Eucgr.J00958' => 'egr', 'FAN11G3091' => 'fan', 'FAN11G3651' => 'fan', 'FAN16G2566' => 'fan', 'FAN21G3155' => 'fan', 'FAN21G3400' => 'fan', 'FAN21G3543' => 'fan', 'FAN25G0234' => 'fan', 'FAN25G1422' => 'fan', 'FAN25G3392' => 'fan', 'FvH4_3g01940' => 'fve', 'FvH4_3g29870' => 'fve', 'FvH4_3g33680' => 'fve', 'Glyma.09G004200' => 'gma', 'Glyma.11G151288' => 'gma', 'Glyma.11G189100' => 'gma', 'Glyma.12G072500' => 'gma', 'Glyma.12G085500' => 'gma', 'Glyma.12G181800' => 'gma', 'Glyma.12G193000' => 'gma', 'Glyma.13G309300' => 'gma', 'Glyma.13G319000' => 'gma', 'Glyma.17G012600' => 'gma', 'Gohir.A06G148600' => 'ghi', 'Gohir.A07G115800' => 'ghi', 'Gohir.A08G003600' => 'ghi', 'Gohir.A09G093300' => 'ghi', 'Gohir.A09G105400' => 'ghi', 'Gohir.A09G105500' => 'ghi', 'Gohir.D06G154600' => 'ghi', 'Gohir.D07G120200' => 'ghi', 'Gohir.D08G013900' => 'ghi', 'Gohir.D09G093100' => 'ghi', 'Gohir.D09G102200' => 'ghi', 'Gohir.D09G102300' => 'ghi', 'Gorai.001G129400' => 'gra', 'Gorai.004G008200' => 'gra', 'Gorai.006G109800' => 'gra', 'Gorai.006G119500' => 'gra', 'Gorai.006G121300' => 'gra', 'Gorai.010G180700' => 'gra', 'GSVIVG01012716001' => 'vvi', 'GSVIVG01025118001' => 'vvi', 'GSVIVG01030439001' => 'vvi', 'GSVIVG01031397001' => 'vvi', 'HanXRQChr01g0004201' => 'han', 'HanXRQChr02g0054941' => 'han', 'HanXRQChr05g0141811' => 'han', 'HanXRQChr07g0197751' => 'han', 'HanXRQChr11g0346691' => 'han', 'HanXRQChr13g0396971' => 'han', 'HanXRQChr14g0432951' => 'han', 'HanXRQChr14g0452001' => 'han', 'HanXRQChr15g0496681' => 'han', 'HanXRQChr17g0557491' => 'han', 'HanXRQChr17g0557501' => 'han', 'Haze_06809' => 'cav', 'Haze_12852' => 'cav', 'Haze_15850' => 'cav', 'Haze_23446' => 'cav', 'Haze_23942' => 'cav', 'Haze_23943' => 'cav', 'Hma1.2p1_0091F.1_g046450' => 'hma', 'Hma1.2p1_0128F.1_g059910' => 'hma', 'Hma1.2p1_0249F.1_g102260' => 'hma', 'Hma1.2p1_0453F.1_g156190' => 'hma', 'Hma1.2p1_0695F.1_g204380' => 'hma', 'Hma1.2p1_0749F.1_g212650' => 'hma', 'Hma1.2p1_2156F.1_g315420' => 'hma', 'Hma1.2p1_2686F.1_g326940' => 'hma', 'HPP92_006428' => 'vpl', 'HPP92_012069' => 'vpl', 'HPP92_014129' => 'vpl', 'HPP92_014133' => 'vpl', 'HPP92_017315' => 'vpl', 'HPP92_026445' => 'vpl', 'HPP92_026446' => 'vpl', 'Hund00774' => 'sun', 'Hund07682' => 'sun', 'Hund21413' => 'sun', 'Hund23462' => 'sun', 'Hund23463' => 'sun', 'Lalb_Chr03g0027911' => 'lal', 'Lalb_Chr13g0304271' => 'lal', 'Lalb_Chr19g0137471' => 'lal', 'Lalb_Chr22g0350651' => 'lal', 'Lalb_Chr24g0395151' => 'lal', 'Lj1A1231T40' => 'lonja', 'Lj1A221T48' => 'lonja', 'Lj1C924T12' => 'lonja', 'Lj2C993G6' => 'lonja', 'Lj3g0005790' => 'lja', 'Lj3g0015432' => 'lja', 'Lj3g0017722' => 'lja', 'Lj3g0018497' => 'lja', 'Lj4g0025071' => 'lja', 'Lsat_1_v5_gn_1_129680' => 'lsa', 'Lsat_1_v5_gn_2_25321' => 'lsa', 'Lsat_1_v5_gn_2_95461' => 'lsa', 'Lsat_1_v5_gn_4_159620' => 'lsa', 'Lsat_1_v5_gn_6_41301' => 'lsa', 'Lsat_1_v5_gn_6_74660' => 'lsa', 'Lsat_1_v5_gn_7_11520' => 'lsa', 'Lsat_1_v5_gn_9_67680' => 'lsa', 'Manes.04G008300' => 'mes', 'Manes.04G008400' => 'mes', 'Manes.04G026500' => 'mes', 'Manes.10G135300' => 'mes', 'Manes.11G157300' => 'mes', 'Manes.12G074000' => 'mes', 'Manes.16G006200' => 'mes', 'Manes.17G026400' => 'mes', 'Mapoly0024s0086' => 'mpo', 'Mapoly0024s0087' => 'mpo', 'Mapoly0071s0057' => 'mpo', 'Mapoly0204s0012' => 'mpo', 'MBI04_g37681_MAGBIO' => 'mbi', 'MBI05_g17779_MAGBIO' => 'mbi', 'MBI12_g31184_MAGBIO' => 'mbi', 'MBI17_g11083_MAGBIO' => 'mbi', 'MBI18_g03883_MAGBIO' => 'mbi', 'MBI18_g28940_MAGBIO' => 'mbi', 'MCO01G690' => 'mco', 'MD03G1109900' => 'mdo', 'MD03G1134800' => 'mdo', 'MD05G1348000' => 'mdo', 'MD10G1322400' => 'mdo', 'MD11G1123300' => 'mdo', 'MD11G1157600' => 'mdo', 'Medtr2g084875' => 'mtr', 'Medtr2g088130' => 'mtr', 'Medtr4g055310' => 'mtr', 'Medtr4g061070' => 'mtr', 'Medtr4g132250' => 'mtr', 'MELO3C004795.2' => 'cme', 'MELO3C004797.2' => 'cme', 'MELO3C007396.2' => 'cme', 'MELO3C019277.2' => 'cme', 'MELO3C021449.2' => 'cme', 'MELO3C025736.2' => 'cme', 'Migut.D02175' => 'egut', 'Migut.H01573' => 'egut', 'Migut.M01327' => 'egut', 'Migut.N02513' => 'egut', 'MSTRG.14638' => 'ama', 'MSTRG.18632' => 'ama', 'MSTRG.7203' => 'ama', 'Nitab4.5_0000533g0140' => 'nta', 'Nitab4.5_0000888g0150' => 'nta', 'Nitab4.5_0001453g0040' => 'nta', 'Nitab4.5_0002827g0090' => 'nta', 'Nitab4.5_0003082g0040' => 'nta', 'Nitab4.5_0007799g0040' => 'nta', 'Nitab4.5_0008983g0010' => 'nta', 'Nitab4.5_0009017g0020' => 'nta', 'Nn1g02132' => 'nnu', 'Nn1g03492' => 'nnu', 'Nn1g03493' => 'nnu', 'Nn1g03494' => 'nnu', 'Nn1g07164' => 'nnu', 'Nn1g07291' => 'nnu', 'Nn2g10655' => 'nnu', 'Nn2g11652' => 'nnu', 'Nn2g14008' => 'nnu', 'Nn3g17476' => 'nnu', 'Nn3g17477' => 'nnu', 'Nn4g22370' => 'nnu', 'Nn4g25255' => 'nnu', 'Nn5g27755' => 'nnu', 'Nn6g34260' => 'nnu', 'Nn6g35041' => 'nnu', 'Oeu005924.1' => 'oeu', 'Oeu008383.1' => 'oeu', 'Oeu014928.1' => 'oeu', 'Oeu019889.1' => 'oeu', 'Oeu022271.1' => 'oeu', 'Oeu025271.1' => 'oeu', 'Oeu036302.1' => 'oeu', 'Oeu044100.1' => 'oeu', 'Os01g0528300' => 'osa', 'Os03g0286200' => 'osa', 'Os04g0406600' => 'osa', 'Os07g0512000' => 'osa', 'Os07g0694600' => 'osa', 'Os08g0411000' => 'osa', 'Os09g0565700' => 'osa', 'Os09g0566050' => 'osa', 'Os10g0523700' => 'osa', 'Peaxi162Scf00002g00514' => 'pax', 'Peaxi162Scf00047g01817' => 'pax', 'Peaxi162Scf00114g00001' => 'pax', 'Peaxi162Scf00147g00613' => 'pax', 'Peaxi162Scf00389g00425' => 'pax', 'PGR042G1139' => 'pgr', 'PGR042G3273' => 'pgr', 'PGR102G2180' => 'pgr', 'PGR119G0234' => 'pgr', 'PGR119G0668' => 'pgr', 'PGSC0003DMG400007122' => 'stu', 'PGSC0003DMG400016478' => 'stu', 'PGSC0003DMG400025374' => 'stu', 'PGSC0003DMG400026536' => 'stu', 'Phvul.003G079600' => 'pvu', 'Phvul.005G115600' => 'pvu', 'Phvul.005G127100' => 'pvu', 'Phvul.006G149500' => 'pvu', 'Phvul.006G149600' => 'pvu', 'Phvul.011G071800' => 'pvu', 'Phvul.011G090400' => 'pvu', 'Potri.004G013400' => 'ptr', 'Potri.004G188100' => 'ptr', 'Potri.008G195500' => 'ptr', 'Potri.009G148800' => 'ptr', 'Potri.011G004700' => 'ptr', 'Pp3c17_22810' => 'ppa', 'Pp3c18_4480' => 'ppa', 'Pp3c19_13030' => 'ppa', 'Pp3c1_33620' => 'ppa', 'Pp3c2_9380' => 'ppa', 'PRCOL_00001023' => 'pco', 'Prupe.3G216300' => 'ppe', 'Prupe.4G019500' => 'ppe', 'Prupe.6G092500' => 'ppe', 'Prupe.6G119200' => 'ppe', 'Psat0s1945g0080' => 'psa', 'Psat0s4167g0040' => 'psa', 'Psat1g185800' => 'psa', 'Psat4g006440' => 'psa', 'Psat4g006480' => 'psa', 'Psat4g168120' => 'psa', 'Psat5g255680' => 'psa', 'Psat5g261760' => 'psa', 'Psat7g222120' => 'psa', 'PSO063G7252' => 'pso', 'PSO170G4778' => 'pso', 'PSO210G2249' => 'pso', 'PSO339G2411' => 'pso', 'PSO339G2457' => 'pso', 'PSO339G2854' => 'pso', 'PSO339G4288' => 'pso', 'PSO339G4615' => 'pso', 'PSO384G2796' => 'pso', 'PSO384G2940' => 'pso', 'PSO384G4227' => 'pso', 'PSO478G1425' => 'pso', 'PSO541G3863' => 'pso', 'PSO675G0507' => 'pso', 'PSO782G0338' => 'pso', 'PSO832G0644' => 'pso', 'QL01p013664' => 'qlo', 'QL01p036598' => 'qlo', 'QL05p072984' => 'qlo', 'QL08p005768' => 'qlo', 'QL08p032743' => 'qlo', 'QL93p0073_0439' => 'qlo', 'QL93p0073_0444' => 'qlo', 'RcHm_v2.0_Chr5g0002851' => 'rch', 'RcHm_v2.0_Chr5g0055201' => 'rch', 'RcHm_v2.0_Chr5g0061191' => 'rch', 'RcHm_v2.0_Chr7g0203231' => 'rch', 'Rhsim01G0208100' => 'rsi', 'Rhsim01G0208200' => 'rsi', 'Rhsim02G0106500' => 'rsi', 'Rhsim03G0107900' => 'rsi', 'Rhsim06G0163400' => 'rsi', 'Rhsim13G0105200' => 'rsi', 'Sabra04G0006300' => 'sbr', 'Sabra04G0127000' => 'sbr', 'Sabra08G0148700' => 'sbr', 'Sabra09G0117400' => 'sbr', 'SalBow1G3326' => 'sbo', 'SalBow3G3228' => 'sbo', 'SalBow6G1634' => 'sbo', 'SalBow6G3603' => 'sbo', 'SalBow6G5266' => 'sbo', 'SalBow7G2265' => 'sbo', 'SalBow8G0850' => 'sbo', 'SalBow8G2592' => 'sbo', 'Sc05g0009240' => 'sci', 'Sc12g0002300' => 'sci', 'Sc21g0000100' => 'sci', 'Sc21g0004720' => 'sci', 'Sed0002949' => 'sed', 'Sed0004114' => 'sed', 'Sed0004306' => 'sed', 'Sed0006172' => 'sed', 'Sed0008413' => 'sed', 'Sed0013809' => 'sed', 'Sed0019556' => 'sed', 'SEGI_03570' => 'sgi', 'SEGI_07859' => 'sgi', 'SEGI_15042' => 'sgi', 'SEGI_16263' => 'sgi', 'SEGI_16552' => 'sgi', 'SEGI_24331' => 'sgi', 'SEGI_27316' => 'sgi', 'SEGI_29521' => 'sgi', 'SEGI_41342' => 'sgi', 'SGA_v2.0_scaffold27G11617' => 'sas', 'SGA_v2.0_scaffold316G48428' => 'sas', 'SGA_v2.0_scaffold49G18261' => 'sas', 'SGA_v2.0_scaffold7G03831' => 'sas', 'SGA_v2.0_scaffold93G28359' => 'sas', 'SHI02210' => 'shi', 'SHI06028' => 'shi', 'SHI06321' => 'shi', 'SMO111G0012' => 'smo', 'SMO228G0080' => 'smo', 'SMO356G0756' => 'smo', 'Solyc02g080620.3' => 'sly', 'Solyc06g074530.1' => 'sly', 'Solyc11g066890.1' => 'sly', 'Solyc11g072520.3' => 'sly', 'Sopen02g025330' => 'spe', 'Sopen06g031000' => 'spe', 'Sopen09g008240' => 'spe', 'Sopen09g025210' => 'spe', 'Sopen11g026600' => 'spe', 'Sopen11g030170' => 'spe', 'Sp1g10420' => 'spa', 'Sp3g06570' => 'spa', 'Sp4g10660' => 'spa', 'Sp5g16460' => 'spa', 'Sp6g22710' => 'spa', 'TAR365G0112' => 'tar', 'TAR369G0717' => 'tar', 'TAR374G0976' => 'tar', 'TAR623G1128' => 'tar', 'TAR626G1937' => 'tar', 'TAR627G0123' => 'tar', 'TAR628G0305' => 'tar', 'TAR636G1176' => 'tar', 'TAR636G2442' => 'tar', 'THA.LOC104800556' => 'tha', 'THA.LOC104809501' => 'tha', 'THA.LOC104815126' => 'tha', 'THA.LOC104815732' => 'tha', 'THA.LOC104823528' => 'tha', 'Thecc.02G365600' => 'tca', 'Thecc.06G222300' => 'tca', 'Thecc.09G261800' => 'tca', 'Thecc.09G291400' => 'tca', 'Thhalv10003028m.g' => 'esa', 'Thhalv10007886m.g' => 'esa', 'Thhalv10016085m.g' => 'esa', 'Thhalv10016681m.g' => 'esa', 'Thhalv10020951m.g' => 'esa', 'TPR.G15598' => 'tpr', 'TPR.G29305' => 'tpr', 'TPR.G32395' => 'tpr', 'TPR.G36998' => 'tpr', 'TPR.G4227' => 'tpr', 'TWI18G1433' => 'twi', 'TWI31G0755' => 'twi', 'TWI38G0912' => 'twi', 'TWI75G1097' => 'twi', 'TWI75G1619' => 'twi', 'TWI79G1336' => 'twi', 'unitig_0.g943' => 'ugi', 'unitig_0.g944' => 'ugi', 'unitig_22.g6646' => 'ugi', 'unitig_37.g12681' => 'ugi', 'unitig_8.g3290' => 'ugi', 'vmacro03278' => 'vma', 'vmacro12197' => 'vma', 'vmacro14478' => 'vma', 'vmacro15787' => 'vma', 'vmacro15789' => 'vma', 'vmacro15790' => 'vma', 'vmacro15806' => 'vma', 'vmacro22907' => 'vma', 'vmacro22908' => 'vma', 'vmacro22909' => 'vma', 'vmacro23108' => 'vma', 'VMungo0540G0540' => 'vmu', 'VMungo0540G2468' => 'vmu', 'VMungo1080G0390' => 'vmu', 'VMungo1080G1165' => 'vmu', 'VMungo1127G0170' => 'vmu', 'VMungo1127G2099' => 'vmu', 'VMungo1215G3013' => 'vmu', 'Zm00001eb013110' => 'zma', 'Zm00001eb084260' => 'zma', 'Zm00001eb096110' => 'zma', 'Zm00001eb217510' => 'zma', 'Zm00001eb322550' => 'zma', 'Zm00001eb390770' => 'zma', 'Zm00001eb397170' => 'zma', 'Zm00001eb404610' => 'zma', 'Zm00001eb421790' => 'zma' ), 'gf_id' => 'HOM05D000911', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000911' ), 'data_identifier' => 'HOM05D000911', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000911', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27780' => 'bna', 'A03p35380' => 'bna', 'A04p21160' => 'bna', 'A05p40570' => 'bna', 'A06p26900' => 'bna', 'A08p33230' => 'bna', 'A09p65960' => 'bna', 'A10p18290' => 'bna', 'Aa31LG1G12990' => 'aar', 'Aa31LG1G2980' => 'aar', 'Aa31LG4G14320' => 'aar', 'Aa31LG7G11800' => 'aar', 'Aa31sc36G50' => 'aar', 'Aa31sc36G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3721' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5459' => 'aag', 'Actinidia03028' => 'ach', 'Actinidia03753' => 'ach', 'Actinidia04187' => 'ach', 'Actinidia05509' => 'ach', 'Actinidia24180' => 'ach', 'Actinidia26906' => 'ach', 'Actinidia37097' => 'ach', 'Actinidia38249' => 'ach', 'Ah.01g003470' => 'amhyb', 'Ah.01g004580' => 'amhyb', 'Ah.01g014850' => 'amhyb', 'Ah.01g016830' => 'amhyb', 'Ah.14g088000' => 'amhyb', 'AL1G22980' => 'aly', 'AL3G18990' => 'aly', 'AL4G22440' => 'aly', 'AL4G33180' => 'aly', 'AL5G22920' => 'aly', 'AL6G33660' => 'aly', 'AL8G20720' => 'aly', 'Aqoxy1G00935' => 'aox', 'Aqoxy1G02094' => 'aox', 'Aqoxy2G01239' => 'aox', 'Aqoxy4G01870' => 'aox', 'Aqoxy7G00450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.36ZVTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71EM27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5D6C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH3WRE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3NCM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RIM768' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YB5YRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z36GDV' => 'arhy', 'AT1G08250' => 'ath', 'AT1G11790' => 'ath', 'AT2G27820' => 'ath', 'AT3G07630' => 'ath', 'AT3G44720' => 'ath', 'AT5G22630' => 'ath', 'ATR0693G304' => 'atr', 'ATR0794G109' => 'atr', 'ATR0820G120' => 'atr', 'ATR1159G064' => 'atr', 'Atru.chr10.2239' => 'acertr', 'Atru.chr3.3371' => 'acertr', 'Atru.chr6.3202' => 'acertr', 'AUR62006499' => 'cqu', 'AUR62012718' => 'cqu', 'AUR62021938' => 'cqu', 'AUR62023932' => 'cqu', 'AUR62025034' => 'cqu', 'AUR62025035' => 'cqu', 'AUR62038307' => 'cqu', 'AUR62043466' => 'cqu', 'BcaB02g10748' => 'bca', 'BcaB03g13231' => 'bca', 'BcaB03g14689' => 'bca', 'BcaB05g22716' => 'bca', 'BcaB06g28172' => 'bca', 'BcaB08g36413' => 'bca', 'BcaC01g02186' => 'bca', 'BcaC01g04272' => 'bca', 'BcaC02g08080' => 'bca', 'BcaC02g08227' => 'bca', 'BcaC03g13901' => 'bca', 'BcaC04g19593' => 'bca', 'BcaC04g20874' => 'bca', 'BcaC05g29557' => 'bca', 'BcaC06g35505' => 'bca', 'BcaC07g41954' => 'bca', 'BcaC07g41955' => 'bca', 'BcaC07g41956' => 'bca', 'BcaC07g42519' => 'bca', 'BcaC07g42520' => 'bca', 'BcaC07g42523' => 'bca', 'BcaC07g42524' => 'bca', 'BcaC07g42525' => 'bca', 'BcaC08g47480' => 'bca', 'BcaC08g47481' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00530' => 'bna', 'BolC2t07178H' => 'bol', 'BolC3t16567H' => 'bol', 'BolC4t27234H' => 'bol', 'BolC5t29728H' => 'bol', 'BolC5t34622H' => 'bol', 'BolC6t40321H' => 'bol', 'BolC7t42028H' => 'bol', 'BolC8t49125H' => 'bol', 'BolC8t52538H' => 'bol', 'BolC8t52539H' => 'bol', 'BolC9t56681H' => 'bol', 'BolC9t58266H' => 'bol', 'BolSC21t60294H' => 'bol', 'BraA02t05670Z' => 'bra', 'BraA03t12716Z' => 'bra', 'BraA04t17685Z' => 'bra', 'BraA05t22788Z' => 'bra', 'BraA06t24032Z' => 'bra', 'BraA06t25625Z' => 'bra', 'BraA07t27930Z' => 'bra', 'BraA08t35242Z' => 'bra', 'BraA09t38609Z' => 'bra', 'BraA10t43905Z' => 'bra', 'C02p11060' => 'bna', 'C03p42990' => 'bna', 'C03p67310' => 'bna', 'C04p56990' => 'bna', 'C04p58660' => 'bna', 'C05p09890' => 'bna', 'C05p59680' => 'bna', 'C06p19830' => 'bna', 'C06p53040' => 'bna', 'C07p15230' => 'bna', 'C08p50070' => 'bna', 'C08p50090' => 'bna', 'C09p38330' => 'bna', 'C09p53940' => 'bna', 'CAN.G1014.1' => 'can', 'CAN.G644.30' => 'can', 'CAN.G84.47' => 'can', 'CAN.G919.8' => 'can', 'CANSAT54G0113' => 'cansat', 'CANSAT54G1286' => 'cansat', 'CANSAT64G1020' => 'cansat', 'CARHR008080' => 'chi', 'CARHR008090' => 'chi', 'CARHR012130' => 'chi', 'CARHR038390' => 'chi', 'CARHR082330' => 'chi', 'CARHR120520' => 'chi', 'CARHR151470' => 'chi', 'CARHR190950' => 'chi', 'Carub.0001s0760' => 'cru', 'Carub.0001s1146' => 'cru', 'Carub.0003s0721' => 'cru', 'Carub.0004s0858' => 'cru', 'Carub.0005s1040' => 'cru', 'Carub.0006s2035' => 'cru', 'Carub.0015s0005' => 'cru', 'Ca_01607_v3' => 'car', 'Ca_01677_v3' => 'car', 'Ca_06087_v3' => 'car', 'Ca_19238_v3' => 'car', 'Ca_19373_v3' => 'car', 'Ca_21079_v3' => 'car', 'CBR_g54016' => 'cbr', 'CBR_g54018' => 'cbr', 'CBR_g54020' => 'cbr', 'Cc01_g09780' => 'ccan', 'Cc01_g11680' => 'ccan', 'Cc02_g15610' => 'ccan', 'Cc05_g04350' => 'ccan', 'Cc09_g01580' => 'ccan', 'CDE01G0795' => 'cde', 'CDE02G2024' => 'cde', 'CDE02G2260' => 'cde', 'CDE02G4561' => 'cde', 'CDE05G2733' => 'cde', 'CDE05G3422' => 'cde', 'CDE06G2003' => 'cde', 'CDE08G0576' => 'cde', 'CDE09G0048' => 'cde', 'CDE11G0805' => 'cde', 'Cfa003644' => 'cfa', 'Cfa006290' => 'cfa', 'Cfa010080' => 'cfa', 'Cfa011376' => 'cfa', 'Cfa011576' => 'cfa', 'Cfa011577' => 'cfa', 'Cfa014389' => 'cfa', 'Ciclev10006044m.g' => 'ccl', 'Ciclev10006954m.g' => 'ccl', 'Ciclev10015131m.g' => 'ccl', 'Ciclev10015580m.g' => 'ccl', 'Ciclev10028359m.g' => 'ccl', 'Ciclev10028573m.g' => 'ccl', 'CiPaw.03G159300' => 'cil', 'CiPaw.04G115100' => 'cil', 'CiPaw.09G092800' => 'cil', 'CiPaw.10G071800' => 'cil', 'CiPaw.13G105800' => 'cil', 'CiPaw.13G141000' => 'cil', 'CiPaw.14G103400' => 'cil', 'ClCG01G012700' => 'cla', 'ClCG01G012720' => 'cla', 'ClCG01G021920' => 'cla', 'ClCG02G008870' => 'cla', 'ClCG02G020840' => 'cla', 'ClCG02G021930' => 'cla', 'COL.COLO4_19302' => 'col', 'COL.COLO4_25262' => 'col', 'COL.COLO4_31788' => 'col', 'Cpa.g.c34684' => 'cpa', 'Cpa.g.c36520.1' => 'cpa', 'Cpa.g.c45626' => 'cpa', 'Cpa.g.sc121.17' => 'cpa', 'Cpa.g.sc13.22' => 'cpa', 'Cpa.g.sc87.88' => 'cpa', 'Cre06.g261800' => 'cre', 'CsaV3_1G014500' => 'csa', 'CsaV3_1G014510' => 'csa', 'CsaV3_2G034880' => 'csa', 'CsaV3_6G014760' => 'csa', 'CsaV3_6G021500' => 'csa', 'CsaV3_6G048980' => 'csa', 'CSS0002511' => 'camsi', 'CSS0007556' => 'camsi', 'CSS0008532' => 'camsi', 'CSS0009709' => 'camsi', 'CSS0010486' => 'camsi', 'CSS0016768' => 'camsi', 'CSS0023512' => 'camsi', 'CSS0025341' => 'camsi', 'CSS0027999' => 'camsi', 'CSS0028944' => 'camsi', 'CSS0032292' => 'camsi', 'CSS0032464' => 'camsi', 'CSS0037153' => 'camsi', 'CSS0039256' => 'camsi', 'CSS0048392' => 'camsi', 'CSS0050458' => 'camsi', 'DCAR_004224' => 'dca', 'DCAR_006147' => 'dca', 'DCAR_006465' => 'dca', 'DCAR_008159' => 'dca', 'DCAR_012164' => 'dca', 'DCAR_019764' => 'dca', 'Dinv05418' => 'din', 'Dinv10839' => 'din', 'Dinv12521' => 'din', 'Dinv13900' => 'din', 'Dinv29426' => 'din', 'Duzib150G0263' => 'dzi', 'Duzib168G1178' => 'dzi', 'Duzib168G1924' => 'dzi', 'Duzib170G0299' => 'dzi', 'Duzib170G0813' => 'dzi', 'Duzib235G1128' => 'dzi', 'Duzib248G1060' => 'dzi', 'ECA232G1910' => 'eca', 'ECA233G4621' => 'eca', 'ECA238G1216' => 'eca', 'ECA238G1784' => 'eca', 'ECA248G1242' => 'eca', 'EL10Ac8g20071' => 'bvu', 'EL10Ac9g21086' => 'bvu', 'EL10Ac9g22407' => 'bvu', 'EL10Ac9g22412' => 'bvu', 'Eucgr.A01119' => 'egr', 'Eucgr.E04043' => 'egr', 'Eucgr.J00428' => 'egr', 'Eucgr.J00958' => 'egr', 'FAN11G3091' => 'fan', 'FAN11G3651' => 'fan', 'FAN16G2566' => 'fan', 'FAN21G3155' => 'fan', 'FAN21G3400' => 'fan', 'FAN21G3543' => 'fan', 'FAN25G0234' => 'fan', 'FAN25G1422' => 'fan', 'FAN25G3392' => 'fan', 'FvH4_3g01940' => 'fve', 'FvH4_3g29870' => 'fve', 'FvH4_3g33680' => 'fve', 'Glyma.09G004200' => 'gma', 'Glyma.11G151288' => 'gma', 'Glyma.11G189100' => 'gma', 'Glyma.12G072500' => 'gma', 'Glyma.12G085500' => 'gma', 'Glyma.12G181800' => 'gma', 'Glyma.12G193000' => 'gma', 'Glyma.13G309300' => 'gma', 'Glyma.13G319000' => 'gma', 'Glyma.17G012600' => 'gma', 'Gohir.A06G148600' => 'ghi', 'Gohir.A07G115800' => 'ghi', 'Gohir.A08G003600' => 'ghi', 'Gohir.A09G093300' => 'ghi', 'Gohir.A09G105400' => 'ghi', 'Gohir.A09G105500' => 'ghi', 'Gohir.D06G154600' => 'ghi', 'Gohir.D07G120200' => 'ghi', 'Gohir.D08G013900' => 'ghi', 'Gohir.D09G093100' => 'ghi', 'Gohir.D09G102200' => 'ghi', 'Gohir.D09G102300' => 'ghi', 'Gorai.001G129400' => 'gra', 'Gorai.004G008200' => 'gra', 'Gorai.006G109800' => 'gra', 'Gorai.006G119500' => 'gra', 'Gorai.006G121300' => 'gra', 'Gorai.010G180700' => 'gra', 'GSVIVG01012716001' => 'vvi', 'GSVIVG01025118001' => 'vvi', 'GSVIVG01030439001' => 'vvi', 'GSVIVG01031397001' => 'vvi', 'HanXRQChr01g0004201' => 'han', 'HanXRQChr02g0054941' => 'han', 'HanXRQChr05g0141811' => 'han', 'HanXRQChr07g0197751' => 'han', 'HanXRQChr11g0346691' => 'han', 'HanXRQChr13g0396971' => 'han', 'HanXRQChr14g0432951' => 'han', 'HanXRQChr14g0452001' => 'han', 'HanXRQChr15g0496681' => 'han', 'HanXRQChr17g0557491' => 'han', 'HanXRQChr17g0557501' => 'han', 'Haze_06809' => 'cav', 'Haze_12852' => 'cav', 'Haze_15850' => 'cav', 'Haze_23446' => 'cav', 'Haze_23942' => 'cav', 'Haze_23943' => 'cav', 'Hma1.2p1_0091F.1_g046450' => 'hma', 'Hma1.2p1_0128F.1_g059910' => 'hma', 'Hma1.2p1_0249F.1_g102260' => 'hma', 'Hma1.2p1_0453F.1_g156190' => 'hma', 'Hma1.2p1_0695F.1_g204380' => 'hma', 'Hma1.2p1_0749F.1_g212650' => 'hma', 'Hma1.2p1_2156F.1_g315420' => 'hma', 'Hma1.2p1_2686F.1_g326940' => 'hma', 'HPP92_006428' => 'vpl', 'HPP92_012069' => 'vpl', 'HPP92_014129' => 'vpl', 'HPP92_014133' => 'vpl', 'HPP92_017315' => 'vpl', 'HPP92_026445' => 'vpl', 'HPP92_026446' => 'vpl', 'Hund00774' => 'sun', 'Hund07682' => 'sun', 'Hund21413' => 'sun', 'Hund23462' => 'sun', 'Hund23463' => 'sun', 'Lalb_Chr03g0027911' => 'lal', 'Lalb_Chr13g0304271' => 'lal', 'Lalb_Chr19g0137471' => 'lal', 'Lalb_Chr22g0350651' => 'lal', 'Lalb_Chr24g0395151' => 'lal', 'Lj1A1231T40' => 'lonja', 'Lj1A221T48' => 'lonja', 'Lj1C924T12' => 'lonja', 'Lj2C993G6' => 'lonja', 'Lj3g0005790' => 'lja', 'Lj3g0015432' => 'lja', 'Lj3g0017722' => 'lja', 'Lj3g0018497' => 'lja', 'Lj4g0025071' => 'lja', 'Lsat_1_v5_gn_1_129680' => 'lsa', 'Lsat_1_v5_gn_2_25321' => 'lsa', 'Lsat_1_v5_gn_2_95461' => 'lsa', 'Lsat_1_v5_gn_4_159620' => 'lsa', 'Lsat_1_v5_gn_6_41301' => 'lsa', 'Lsat_1_v5_gn_6_74660' => 'lsa', 'Lsat_1_v5_gn_7_11520' => 'lsa', 'Lsat_1_v5_gn_9_67680' => 'lsa', 'Manes.04G008300' => 'mes', 'Manes.04G008400' => 'mes', 'Manes.04G026500' => 'mes', 'Manes.10G135300' => 'mes', 'Manes.11G157300' => 'mes', 'Manes.12G074000' => 'mes', 'Manes.16G006200' => 'mes', 'Manes.17G026400' => 'mes', 'Mapoly0024s0086' => 'mpo', 'Mapoly0024s0087' => 'mpo', 'Mapoly0071s0057' => 'mpo', 'Mapoly0204s0012' => 'mpo', 'MBI04_g37681_MAGBIO' => 'mbi', 'MBI05_g17779_MAGBIO' => 'mbi', 'MBI12_g31184_MAGBIO' => 'mbi', 'MBI17_g11083_MAGBIO' => 'mbi', 'MBI18_g03883_MAGBIO' => 'mbi', 'MBI18_g28940_MAGBIO' => 'mbi', 'MCO01G690' => 'mco', 'MD03G1109900' => 'mdo', 'MD03G1134800' => 'mdo', 'MD05G1348000' => 'mdo', 'MD10G1322400' => 'mdo', 'MD11G1123300' => 'mdo', 'MD11G1157600' => 'mdo', 'Medtr2g084875' => 'mtr', 'Medtr2g088130' => 'mtr', 'Medtr4g055310' => 'mtr', 'Medtr4g061070' => 'mtr', 'Medtr4g132250' => 'mtr', 'MELO3C004795.2' => 'cme', 'MELO3C004797.2' => 'cme', 'MELO3C007396.2' => 'cme', 'MELO3C019277.2' => 'cme', 'MELO3C021449.2' => 'cme', 'MELO3C025736.2' => 'cme', 'Migut.D02175' => 'egut', 'Migut.H01573' => 'egut', 'Migut.M01327' => 'egut', 'Migut.N02513' => 'egut', 'MSTRG.14638' => 'ama', 'MSTRG.18632' => 'ama', 'MSTRG.7203' => 'ama', 'Nitab4.5_0000533g0140' => 'nta', 'Nitab4.5_0000888g0150' => 'nta', 'Nitab4.5_0001453g0040' => 'nta', 'Nitab4.5_0002827g0090' => 'nta', 'Nitab4.5_0003082g0040' => 'nta', 'Nitab4.5_0007799g0040' => 'nta', 'Nitab4.5_0008983g0010' => 'nta', 'Nitab4.5_0009017g0020' => 'nta', 'Nn1g02132' => 'nnu', 'Nn1g03492' => 'nnu', 'Nn1g03493' => 'nnu', 'Nn1g03494' => 'nnu', 'Nn1g07164' => 'nnu', 'Nn1g07291' => 'nnu', 'Nn2g10655' => 'nnu', 'Nn2g11652' => 'nnu', 'Nn2g14008' => 'nnu', 'Nn3g17476' => 'nnu', 'Nn3g17477' => 'nnu', 'Nn4g22370' => 'nnu', 'Nn4g25255' => 'nnu', 'Nn5g27755' => 'nnu', 'Nn6g34260' => 'nnu', 'Nn6g35041' => 'nnu', 'Oeu005924.1' => 'oeu', 'Oeu008383.1' => 'oeu', 'Oeu014928.1' => 'oeu', 'Oeu019889.1' => 'oeu', 'Oeu022271.1' => 'oeu', 'Oeu025271.1' => 'oeu', 'Oeu036302.1' => 'oeu', 'Oeu044100.1' => 'oeu', 'Os01g0528300' => 'osa', 'Os03g0286200' => 'osa', 'Os04g0406600' => 'osa', 'Os07g0512000' => 'osa', 'Os07g0694600' => 'osa', 'Os08g0411000' => 'osa', 'Os09g0565700' => 'osa', 'Os09g0566050' => 'osa', 'Os10g0523700' => 'osa', 'Peaxi162Scf00002g00514' => 'pax', 'Peaxi162Scf00047g01817' => 'pax', 'Peaxi162Scf00114g00001' => 'pax', 'Peaxi162Scf00147g00613' => 'pax', 'Peaxi162Scf00389g00425' => 'pax', 'PGR042G1139' => 'pgr', 'PGR042G3273' => 'pgr', 'PGR102G2180' => 'pgr', 'PGR119G0234' => 'pgr', 'PGR119G0668' => 'pgr', 'PGSC0003DMG400007122' => 'stu', 'PGSC0003DMG400016478' => 'stu', 'PGSC0003DMG400025374' => 'stu', 'PGSC0003DMG400026536' => 'stu', 'Phvul.003G079600' => 'pvu', 'Phvul.005G115600' => 'pvu', 'Phvul.005G127100' => 'pvu', 'Phvul.006G149500' => 'pvu', 'Phvul.006G149600' => 'pvu', 'Phvul.011G071800' => 'pvu', 'Phvul.011G090400' => 'pvu', 'Potri.004G013400' => 'ptr', 'Potri.004G188100' => 'ptr', 'Potri.008G195500' => 'ptr', 'Potri.009G148800' => 'ptr', 'Potri.011G004700' => 'ptr', 'Pp3c17_22810' => 'ppa', 'Pp3c18_4480' => 'ppa', 'Pp3c19_13030' => 'ppa', 'Pp3c1_33620' => 'ppa', 'Pp3c2_9380' => 'ppa', 'PRCOL_00001023' => 'pco', 'Prupe.3G216300' => 'ppe', 'Prupe.4G019500' => 'ppe', 'Prupe.6G092500' => 'ppe', 'Prupe.6G119200' => 'ppe', 'Psat0s1945g0080' => 'psa', 'Psat0s4167g0040' => 'psa', 'Psat1g185800' => 'psa', 'Psat4g006440' => 'psa', 'Psat4g006480' => 'psa', 'Psat4g168120' => 'psa', 'Psat5g255680' => 'psa', 'Psat5g261760' => 'psa', 'Psat7g222120' => 'psa', 'PSO063G7252' => 'pso', 'PSO170G4778' => 'pso', 'PSO210G2249' => 'pso', 'PSO339G2411' => 'pso', 'PSO339G2457' => 'pso', 'PSO339G2854' => 'pso', 'PSO339G4288' => 'pso', 'PSO339G4615' => 'pso', 'PSO384G2796' => 'pso', 'PSO384G2940' => 'pso', 'PSO384G4227' => 'pso', 'PSO478G1425' => 'pso', 'PSO541G3863' => 'pso', 'PSO675G0507' => 'pso', 'PSO782G0338' => 'pso', 'PSO832G0644' => 'pso', 'QL01p013664' => 'qlo', 'QL01p036598' => 'qlo', 'QL05p072984' => 'qlo', 'QL08p005768' => 'qlo', 'QL08p032743' => 'qlo', 'QL93p0073_0439' => 'qlo', 'QL93p0073_0444' => 'qlo', 'RcHm_v2.0_Chr5g0002851' => 'rch', 'RcHm_v2.0_Chr5g0055201' => 'rch', 'RcHm_v2.0_Chr5g0061191' => 'rch', 'RcHm_v2.0_Chr7g0203231' => 'rch', 'Rhsim01G0208100' => 'rsi', 'Rhsim01G0208200' => 'rsi', 'Rhsim02G0106500' => 'rsi', 'Rhsim03G0107900' => 'rsi', 'Rhsim06G0163400' => 'rsi', 'Rhsim13G0105200' => 'rsi', 'Sabra04G0006300' => 'sbr', 'Sabra04G0127000' => 'sbr', 'Sabra08G0148700' => 'sbr', 'Sabra09G0117400' => 'sbr', 'SalBow1G3326' => 'sbo', 'SalBow3G3228' => 'sbo', 'SalBow6G1634' => 'sbo', 'SalBow6G3603' => 'sbo', 'SalBow6G5266' => 'sbo', 'SalBow7G2265' => 'sbo', 'SalBow8G0850' => 'sbo', 'SalBow8G2592' => 'sbo', 'Sc05g0009240' => 'sci', 'Sc12g0002300' => 'sci', 'Sc21g0000100' => 'sci', 'Sc21g0004720' => 'sci', 'Sed0002949' => 'sed', 'Sed0004114' => 'sed', 'Sed0004306' => 'sed', 'Sed0006172' => 'sed', 'Sed0008413' => 'sed', 'Sed0013809' => 'sed', 'Sed0019556' => 'sed', 'SEGI_03570' => 'sgi', 'SEGI_07859' => 'sgi', 'SEGI_15042' => 'sgi', 'SEGI_16263' => 'sgi', 'SEGI_16552' => 'sgi', 'SEGI_24331' => 'sgi', 'SEGI_27316' => 'sgi', 'SEGI_29521' => 'sgi', 'SEGI_41342' => 'sgi', 'SGA_v2.0_scaffold27G11617' => 'sas', 'SGA_v2.0_scaffold316G48428' => 'sas', 'SGA_v2.0_scaffold49G18261' => 'sas', 'SGA_v2.0_scaffold7G03831' => 'sas', 'SGA_v2.0_scaffold93G28359' => 'sas', 'SHI02210' => 'shi', 'SHI06028' => 'shi', 'SHI06321' => 'shi', 'SMO111G0012' => 'smo', 'SMO228G0080' => 'smo', 'SMO356G0756' => 'smo', 'Solyc02g080620.3' => 'sly', 'Solyc06g074530.1' => 'sly', 'Solyc11g066890.1' => 'sly', 'Solyc11g072520.3' => 'sly', 'Sopen02g025330' => 'spe', 'Sopen06g031000' => 'spe', 'Sopen09g008240' => 'spe', 'Sopen09g025210' => 'spe', 'Sopen11g026600' => 'spe', 'Sopen11g030170' => 'spe', 'Sp1g10420' => 'spa', 'Sp3g06570' => 'spa', 'Sp4g10660' => 'spa', 'Sp5g16460' => 'spa', 'Sp6g22710' => 'spa', 'TAR365G0112' => 'tar', 'TAR369G0717' => 'tar', 'TAR374G0976' => 'tar', 'TAR623G1128' => 'tar', 'TAR626G1937' => 'tar', 'TAR627G0123' => 'tar', 'TAR628G0305' => 'tar', 'TAR636G1176' => 'tar', 'TAR636G2442' => 'tar', 'THA.LOC104800556' => 'tha', 'THA.LOC104809501' => 'tha', 'THA.LOC104815126' => 'tha', 'THA.LOC104815732' => 'tha', 'THA.LOC104823528' => 'tha', 'Thecc.02G365600' => 'tca', 'Thecc.06G222300' => 'tca', 'Thecc.09G261800' => 'tca', 'Thecc.09G291400' => 'tca', 'Thhalv10003028m.g' => 'esa', 'Thhalv10007886m.g' => 'esa', 'Thhalv10016085m.g' => 'esa', 'Thhalv10016681m.g' => 'esa', 'Thhalv10020951m.g' => 'esa', 'TPR.G15598' => 'tpr', 'TPR.G29305' => 'tpr', 'TPR.G32395' => 'tpr', 'TPR.G36998' => 'tpr', 'TPR.G4227' => 'tpr', 'TWI18G1433' => 'twi', 'TWI31G0755' => 'twi', 'TWI38G0912' => 'twi', 'TWI75G1097' => 'twi', 'TWI75G1619' => 'twi', 'TWI79G1336' => 'twi', 'unitig_0.g943' => 'ugi', 'unitig_0.g944' => 'ugi', 'unitig_22.g6646' => 'ugi', 'unitig_37.g12681' => 'ugi', 'unitig_8.g3290' => 'ugi', 'vmacro03278' => 'vma', 'vmacro12197' => 'vma', 'vmacro14478' => 'vma', 'vmacro15787' => 'vma', 'vmacro15789' => 'vma', 'vmacro15790' => 'vma', 'vmacro15806' => 'vma', 'vmacro22907' => 'vma', 'vmacro22908' => 'vma', 'vmacro22909' => 'vma', 'vmacro23108' => 'vma', 'VMungo0540G0540' => 'vmu', 'VMungo0540G2468' => 'vmu', 'VMungo1080G0390' => 'vmu', 'VMungo1080G1165' => 'vmu', 'VMungo1127G0170' => 'vmu', 'VMungo1127G2099' => 'vmu', 'VMungo1215G3013' => 'vmu', 'Zm00001eb013110' => 'zma', 'Zm00001eb084260' => 'zma', 'Zm00001eb096110' => 'zma', 'Zm00001eb217510' => 'zma', 'Zm00001eb322550' => 'zma', 'Zm00001eb390770' => 'zma', 'Zm00001eb397170' => 'zma', 'Zm00001eb404610' => 'zma', 'Zm00001eb421790' => 'zma' ) $gf_id = 'HOM05D000911' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000911' ) $data_identifier = 'HOM05D000911' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 16, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 5, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 6, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 8, 'nnu' => (int) 16, 'oeu' => (int) 8, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 5, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 16, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421790' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000911', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27780' => 'bna', 'A03p35380' => 'bna', 'A04p21160' => 'bna', 'A05p40570' => 'bna', 'A06p26900' => 'bna', 'A08p33230' => 'bna', 'A09p65960' => 'bna', 'A10p18290' => 'bna', 'Aa31LG1G12990' => 'aar', 'Aa31LG1G2980' => 'aar', 'Aa31LG4G14320' => 'aar', 'Aa31LG7G11800' => 'aar', 'Aa31sc36G50' => 'aar', 'Aa31sc36G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3721' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5459' => 'aag', 'Actinidia03028' => 'ach', 'Actinidia03753' => 'ach', 'Actinidia04187' => 'ach', 'Actinidia05509' => 'ach', 'Actinidia24180' => 'ach', 'Actinidia26906' => 'ach', 'Actinidia37097' => 'ach', 'Actinidia38249' => 'ach', 'Ah.01g003470' => 'amhyb', 'Ah.01g004580' => 'amhyb', 'Ah.01g014850' => 'amhyb', 'Ah.01g016830' => 'amhyb', 'Ah.14g088000' => 'amhyb', 'AL1G22980' => 'aly', 'AL3G18990' => 'aly', 'AL4G22440' => 'aly', 'AL4G33180' => 'aly', 'AL5G22920' => 'aly', 'AL6G33660' => 'aly', 'AL8G20720' => 'aly', 'Aqoxy1G00935' => 'aox', 'Aqoxy1G02094' => 'aox', 'Aqoxy2G01239' => 'aox', 'Aqoxy4G01870' => 'aox', 'Aqoxy7G00450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.36ZVTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71EM27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5D6C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH3WRE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3NCM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RIM768' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YB5YRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z36GDV' => 'arhy', 'AT1G08250' => 'ath', 'AT1G11790' => 'ath', 'AT2G27820' => 'ath', 'AT3G07630' => 'ath', 'AT3G44720' => 'ath', 'AT5G22630' => 'ath', 'ATR0693G304' => 'atr', 'ATR0794G109' => 'atr', 'ATR0820G120' => 'atr', 'ATR1159G064' => 'atr', 'Atru.chr10.2239' => 'acertr', 'Atru.chr3.3371' => 'acertr', 'Atru.chr6.3202' => 'acertr', 'AUR62006499' => 'cqu', 'AUR62012718' => 'cqu', 'AUR62021938' => 'cqu', 'AUR62023932' => 'cqu', 'AUR62025034' => 'cqu', 'AUR62025035' => 'cqu', 'AUR62038307' => 'cqu', 'AUR62043466' => 'cqu', 'BcaB02g10748' => 'bca', 'BcaB03g13231' => 'bca', 'BcaB03g14689' => 'bca', 'BcaB05g22716' => 'bca', 'BcaB06g28172' => 'bca', 'BcaB08g36413' => 'bca', 'BcaC01g02186' => 'bca', 'BcaC01g04272' => 'bca', 'BcaC02g08080' => 'bca', 'BcaC02g08227' => 'bca', 'BcaC03g13901' => 'bca', 'BcaC04g19593' => 'bca', 'BcaC04g20874' => 'bca', 'BcaC05g29557' => 'bca', 'BcaC06g35505' => 'bca', 'BcaC07g41954' => 'bca', 'BcaC07g41955' => 'bca', 'BcaC07g41956' => 'bca', 'BcaC07g42519' => 'bca', 'BcaC07g42520' => 'bca', 'BcaC07g42523' => 'bca', 'BcaC07g42524' => 'bca', 'BcaC07g42525' => 'bca', 'BcaC08g47480' => 'bca', 'BcaC08g47481' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00530' => 'bna', 'BolC2t07178H' => 'bol', 'BolC3t16567H' => 'bol', 'BolC4t27234H' => 'bol', 'BolC5t29728H' => 'bol', 'BolC5t34622H' => 'bol', 'BolC6t40321H' => 'bol', 'BolC7t42028H' => 'bol', 'BolC8t49125H' => 'bol', 'BolC8t52538H' => 'bol', 'BolC8t52539H' => 'bol', 'BolC9t56681H' => 'bol', 'BolC9t58266H' => 'bol', 'BolSC21t60294H' => 'bol', 'BraA02t05670Z' => 'bra', 'BraA03t12716Z' => 'bra', 'BraA04t17685Z' => 'bra', 'BraA05t22788Z' => 'bra', 'BraA06t24032Z' => 'bra', 'BraA06t25625Z' => 'bra', 'BraA07t27930Z' => 'bra', 'BraA08t35242Z' => 'bra', 'BraA09t38609Z' => 'bra', 'BraA10t43905Z' => 'bra', 'C02p11060' => 'bna', 'C03p42990' => 'bna', 'C03p67310' => 'bna', 'C04p56990' => 'bna', 'C04p58660' => 'bna', 'C05p09890' => 'bna', 'C05p59680' => 'bna', 'C06p19830' => 'bna', 'C06p53040' => 'bna', 'C07p15230' => 'bna', 'C08p50070' => 'bna', 'C08p50090' => 'bna', 'C09p38330' => 'bna', 'C09p53940' => 'bna', 'CAN.G1014.1' => 'can', 'CAN.G644.30' => 'can', 'CAN.G84.47' => 'can', 'CAN.G919.8' => 'can', 'CANSAT54G0113' => 'cansat', 'CANSAT54G1286' => 'cansat', 'CANSAT64G1020' => 'cansat', 'CARHR008080' => 'chi', 'CARHR008090' => 'chi', 'CARHR012130' => 'chi', 'CARHR038390' => 'chi', 'CARHR082330' => 'chi', 'CARHR120520' => 'chi', 'CARHR151470' => 'chi', 'CARHR190950' => 'chi', 'Carub.0001s0760' => 'cru', 'Carub.0001s1146' => 'cru', 'Carub.0003s0721' => 'cru', 'Carub.0004s0858' => 'cru', 'Carub.0005s1040' => 'cru', 'Carub.0006s2035' => 'cru', 'Carub.0015s0005' => 'cru', 'Ca_01607_v3' => 'car', 'Ca_01677_v3' => 'car', 'Ca_06087_v3' => 'car', 'Ca_19238_v3' => 'car', 'Ca_19373_v3' => 'car', 'Ca_21079_v3' => 'car', 'CBR_g54016' => 'cbr', 'CBR_g54018' => 'cbr', 'CBR_g54020' => 'cbr', 'Cc01_g09780' => 'ccan', 'Cc01_g11680' => 'ccan', 'Cc02_g15610' => 'ccan', 'Cc05_g04350' => 'ccan', 'Cc09_g01580' => 'ccan', 'CDE01G0795' => 'cde', 'CDE02G2024' => 'cde', 'CDE02G2260' => 'cde', 'CDE02G4561' => 'cde', 'CDE05G2733' => 'cde', 'CDE05G3422' => 'cde', 'CDE06G2003' => 'cde', 'CDE08G0576' => 'cde', 'CDE09G0048' => 'cde', 'CDE11G0805' => 'cde', 'Cfa003644' => 'cfa', 'Cfa006290' => 'cfa', 'Cfa010080' => 'cfa', 'Cfa011376' => 'cfa', 'Cfa011576' => 'cfa', 'Cfa011577' => 'cfa', 'Cfa014389' => 'cfa', 'Ciclev10006044m.g' => 'ccl', 'Ciclev10006954m.g' => 'ccl', 'Ciclev10015131m.g' => 'ccl', 'Ciclev10015580m.g' => 'ccl', 'Ciclev10028359m.g' => 'ccl', 'Ciclev10028573m.g' => 'ccl', 'CiPaw.03G159300' => 'cil', 'CiPaw.04G115100' => 'cil', 'CiPaw.09G092800' => 'cil', 'CiPaw.10G071800' => 'cil', 'CiPaw.13G105800' => 'cil', 'CiPaw.13G141000' => 'cil', 'CiPaw.14G103400' => 'cil', 'ClCG01G012700' => 'cla', 'ClCG01G012720' => 'cla', 'ClCG01G021920' => 'cla', 'ClCG02G008870' => 'cla', 'ClCG02G020840' => 'cla', 'ClCG02G021930' => 'cla', 'COL.COLO4_19302' => 'col', 'COL.COLO4_25262' => 'col', 'COL.COLO4_31788' => 'col', 'Cpa.g.c34684' => 'cpa', 'Cpa.g.c36520.1' => 'cpa', 'Cpa.g.c45626' => 'cpa', 'Cpa.g.sc121.17' => 'cpa', 'Cpa.g.sc13.22' => 'cpa', 'Cpa.g.sc87.88' => 'cpa', 'Cre06.g261800' => 'cre', 'CsaV3_1G014500' => 'csa', 'CsaV3_1G014510' => 'csa', 'CsaV3_2G034880' => 'csa', 'CsaV3_6G014760' => 'csa', 'CsaV3_6G021500' => 'csa', 'CsaV3_6G048980' => 'csa', 'CSS0002511' => 'camsi', 'CSS0007556' => 'camsi', 'CSS0008532' => 'camsi', 'CSS0009709' => 'camsi', 'CSS0010486' => 'camsi', 'CSS0016768' => 'camsi', 'CSS0023512' => 'camsi', 'CSS0025341' => 'camsi', 'CSS0027999' => 'camsi', 'CSS0028944' => 'camsi', 'CSS0032292' => 'camsi', 'CSS0032464' => 'camsi', 'CSS0037153' => 'camsi', 'CSS0039256' => 'camsi', 'CSS0048392' => 'camsi', 'CSS0050458' => 'camsi', 'DCAR_004224' => 'dca', 'DCAR_006147' => 'dca', 'DCAR_006465' => 'dca', 'DCAR_008159' => 'dca', 'DCAR_012164' => 'dca', 'DCAR_019764' => 'dca', 'Dinv05418' => 'din', 'Dinv10839' => 'din', 'Dinv12521' => 'din', 'Dinv13900' => 'din', 'Dinv29426' => 'din', 'Duzib150G0263' => 'dzi', 'Duzib168G1178' => 'dzi', 'Duzib168G1924' => 'dzi', 'Duzib170G0299' => 'dzi', 'Duzib170G0813' => 'dzi', 'Duzib235G1128' => 'dzi', 'Duzib248G1060' => 'dzi', 'ECA232G1910' => 'eca', 'ECA233G4621' => 'eca', 'ECA238G1216' => 'eca', 'ECA238G1784' => 'eca', 'ECA248G1242' => 'eca', 'EL10Ac8g20071' => 'bvu', 'EL10Ac9g21086' => 'bvu', 'EL10Ac9g22407' => 'bvu', 'EL10Ac9g22412' => 'bvu', 'Eucgr.A01119' => 'egr', 'Eucgr.E04043' => 'egr', 'Eucgr.J00428' => 'egr', 'Eucgr.J00958' => 'egr', 'FAN11G3091' => 'fan', 'FAN11G3651' => 'fan', 'FAN16G2566' => 'fan', 'FAN21G3155' => 'fan', 'FAN21G3400' => 'fan', 'FAN21G3543' => 'fan', 'FAN25G0234' => 'fan', 'FAN25G1422' => 'fan', 'FAN25G3392' => 'fan', 'FvH4_3g01940' => 'fve', 'FvH4_3g29870' => 'fve', 'FvH4_3g33680' => 'fve', 'Glyma.09G004200' => 'gma', 'Glyma.11G151288' => 'gma', 'Glyma.11G189100' => 'gma', 'Glyma.12G072500' => 'gma', 'Glyma.12G085500' => 'gma', 'Glyma.12G181800' => 'gma', 'Glyma.12G193000' => 'gma', 'Glyma.13G309300' => 'gma', 'Glyma.13G319000' => 'gma', 'Glyma.17G012600' => 'gma', 'Gohir.A06G148600' => 'ghi', 'Gohir.A07G115800' => 'ghi', 'Gohir.A08G003600' => 'ghi', 'Gohir.A09G093300' => 'ghi', 'Gohir.A09G105400' => 'ghi', 'Gohir.A09G105500' => 'ghi', 'Gohir.D06G154600' => 'ghi', 'Gohir.D07G120200' => 'ghi', 'Gohir.D08G013900' => 'ghi', 'Gohir.D09G093100' => 'ghi', 'Gohir.D09G102200' => 'ghi', 'Gohir.D09G102300' => 'ghi', 'Gorai.001G129400' => 'gra', 'Gorai.004G008200' => 'gra', 'Gorai.006G109800' => 'gra', 'Gorai.006G119500' => 'gra', 'Gorai.006G121300' => 'gra', 'Gorai.010G180700' => 'gra', 'GSVIVG01012716001' => 'vvi', 'GSVIVG01025118001' => 'vvi', 'GSVIVG01030439001' => 'vvi', 'GSVIVG01031397001' => 'vvi', 'HanXRQChr01g0004201' => 'han', 'HanXRQChr02g0054941' => 'han', 'HanXRQChr05g0141811' => 'han', 'HanXRQChr07g0197751' => 'han', 'HanXRQChr11g0346691' => 'han', 'HanXRQChr13g0396971' => 'han', 'HanXRQChr14g0432951' => 'han', 'HanXRQChr14g0452001' => 'han', 'HanXRQChr15g0496681' => 'han', 'HanXRQChr17g0557491' => 'han', 'HanXRQChr17g0557501' => 'han', 'Haze_06809' => 'cav', 'Haze_12852' => 'cav', 'Haze_15850' => 'cav', 'Haze_23446' => 'cav', 'Haze_23942' => 'cav', 'Haze_23943' => 'cav', 'Hma1.2p1_0091F.1_g046450' => 'hma', 'Hma1.2p1_0128F.1_g059910' => 'hma', 'Hma1.2p1_0249F.1_g102260' => 'hma', 'Hma1.2p1_0453F.1_g156190' => 'hma', 'Hma1.2p1_0695F.1_g204380' => 'hma', 'Hma1.2p1_0749F.1_g212650' => 'hma', 'Hma1.2p1_2156F.1_g315420' => 'hma', 'Hma1.2p1_2686F.1_g326940' => 'hma', 'HPP92_006428' => 'vpl', 'HPP92_012069' => 'vpl', 'HPP92_014129' => 'vpl', 'HPP92_014133' => 'vpl', 'HPP92_017315' => 'vpl', 'HPP92_026445' => 'vpl', 'HPP92_026446' => 'vpl', 'Hund00774' => 'sun', 'Hund07682' => 'sun', 'Hund21413' => 'sun', 'Hund23462' => 'sun', 'Hund23463' => 'sun', 'Lalb_Chr03g0027911' => 'lal', 'Lalb_Chr13g0304271' => 'lal', 'Lalb_Chr19g0137471' => 'lal', 'Lalb_Chr22g0350651' => 'lal', 'Lalb_Chr24g0395151' => 'lal', 'Lj1A1231T40' => 'lonja', 'Lj1A221T48' => 'lonja', 'Lj1C924T12' => 'lonja', 'Lj2C993G6' => 'lonja', 'Lj3g0005790' => 'lja', 'Lj3g0015432' => 'lja', 'Lj3g0017722' => 'lja', 'Lj3g0018497' => 'lja', 'Lj4g0025071' => 'lja', 'Lsat_1_v5_gn_1_129680' => 'lsa', 'Lsat_1_v5_gn_2_25321' => 'lsa', 'Lsat_1_v5_gn_2_95461' => 'lsa', 'Lsat_1_v5_gn_4_159620' => 'lsa', 'Lsat_1_v5_gn_6_41301' => 'lsa', 'Lsat_1_v5_gn_6_74660' => 'lsa', 'Lsat_1_v5_gn_7_11520' => 'lsa', 'Lsat_1_v5_gn_9_67680' => 'lsa', 'Manes.04G008300' => 'mes', 'Manes.04G008400' => 'mes', 'Manes.04G026500' => 'mes', 'Manes.10G135300' => 'mes', 'Manes.11G157300' => 'mes', 'Manes.12G074000' => 'mes', 'Manes.16G006200' => 'mes', 'Manes.17G026400' => 'mes', 'Mapoly0024s0086' => 'mpo', 'Mapoly0024s0087' => 'mpo', 'Mapoly0071s0057' => 'mpo', 'Mapoly0204s0012' => 'mpo', 'MBI04_g37681_MAGBIO' => 'mbi', 'MBI05_g17779_MAGBIO' => 'mbi', 'MBI12_g31184_MAGBIO' => 'mbi', 'MBI17_g11083_MAGBIO' => 'mbi', 'MBI18_g03883_MAGBIO' => 'mbi', 'MBI18_g28940_MAGBIO' => 'mbi', 'MCO01G690' => 'mco', 'MD03G1109900' => 'mdo', 'MD03G1134800' => 'mdo', 'MD05G1348000' => 'mdo', 'MD10G1322400' => 'mdo', 'MD11G1123300' => 'mdo', 'MD11G1157600' => 'mdo', 'Medtr2g084875' => 'mtr', 'Medtr2g088130' => 'mtr', 'Medtr4g055310' => 'mtr', 'Medtr4g061070' => 'mtr', 'Medtr4g132250' => 'mtr', 'MELO3C004795.2' => 'cme', 'MELO3C004797.2' => 'cme', 'MELO3C007396.2' => 'cme', 'MELO3C019277.2' => 'cme', 'MELO3C021449.2' => 'cme', 'MELO3C025736.2' => 'cme', 'Migut.D02175' => 'egut', 'Migut.H01573' => 'egut', 'Migut.M01327' => 'egut', 'Migut.N02513' => 'egut', 'MSTRG.14638' => 'ama', 'MSTRG.18632' => 'ama', 'MSTRG.7203' => 'ama', 'Nitab4.5_0000533g0140' => 'nta', 'Nitab4.5_0000888g0150' => 'nta', 'Nitab4.5_0001453g0040' => 'nta', 'Nitab4.5_0002827g0090' => 'nta', 'Nitab4.5_0003082g0040' => 'nta', 'Nitab4.5_0007799g0040' => 'nta', 'Nitab4.5_0008983g0010' => 'nta', 'Nitab4.5_0009017g0020' => 'nta', 'Nn1g02132' => 'nnu', 'Nn1g03492' => 'nnu', 'Nn1g03493' => 'nnu', 'Nn1g03494' => 'nnu', 'Nn1g07164' => 'nnu', 'Nn1g07291' => 'nnu', 'Nn2g10655' => 'nnu', 'Nn2g11652' => 'nnu', 'Nn2g14008' => 'nnu', 'Nn3g17476' => 'nnu', 'Nn3g17477' => 'nnu', 'Nn4g22370' => 'nnu', 'Nn4g25255' => 'nnu', 'Nn5g27755' => 'nnu', 'Nn6g34260' => 'nnu', 'Nn6g35041' => 'nnu', 'Oeu005924.1' => 'oeu', 'Oeu008383.1' => 'oeu', 'Oeu014928.1' => 'oeu', 'Oeu019889.1' => 'oeu', 'Oeu022271.1' => 'oeu', 'Oeu025271.1' => 'oeu', 'Oeu036302.1' => 'oeu', 'Oeu044100.1' => 'oeu', 'Os01g0528300' => 'osa', 'Os03g0286200' => 'osa', 'Os04g0406600' => 'osa', 'Os07g0512000' => 'osa', 'Os07g0694600' => 'osa', 'Os08g0411000' => 'osa', 'Os09g0565700' => 'osa', 'Os09g0566050' => 'osa', 'Os10g0523700' => 'osa', 'Peaxi162Scf00002g00514' => 'pax', 'Peaxi162Scf00047g01817' => 'pax', 'Peaxi162Scf00114g00001' => 'pax', 'Peaxi162Scf00147g00613' => 'pax', 'Peaxi162Scf00389g00425' => 'pax', 'PGR042G1139' => 'pgr', 'PGR042G3273' => 'pgr', 'PGR102G2180' => 'pgr', 'PGR119G0234' => 'pgr', 'PGR119G0668' => 'pgr', 'PGSC0003DMG400007122' => 'stu', 'PGSC0003DMG400016478' => 'stu', 'PGSC0003DMG400025374' => 'stu', 'PGSC0003DMG400026536' => 'stu', 'Phvul.003G079600' => 'pvu', 'Phvul.005G115600' => 'pvu', 'Phvul.005G127100' => 'pvu', 'Phvul.006G149500' => 'pvu', 'Phvul.006G149600' => 'pvu', 'Phvul.011G071800' => 'pvu', 'Phvul.011G090400' => 'pvu', 'Potri.004G013400' => 'ptr', 'Potri.004G188100' => 'ptr', 'Potri.008G195500' => 'ptr', 'Potri.009G148800' => 'ptr', 'Potri.011G004700' => 'ptr', 'Pp3c17_22810' => 'ppa', 'Pp3c18_4480' => 'ppa', 'Pp3c19_13030' => 'ppa', 'Pp3c1_33620' => 'ppa', 'Pp3c2_9380' => 'ppa', 'PRCOL_00001023' => 'pco', 'Prupe.3G216300' => 'ppe', 'Prupe.4G019500' => 'ppe', 'Prupe.6G092500' => 'ppe', 'Prupe.6G119200' => 'ppe', 'Psat0s1945g0080' => 'psa', 'Psat0s4167g0040' => 'psa', 'Psat1g185800' => 'psa', 'Psat4g006440' => 'psa', 'Psat4g006480' => 'psa', 'Psat4g168120' => 'psa', 'Psat5g255680' => 'psa', 'Psat5g261760' => 'psa', 'Psat7g222120' => 'psa', 'PSO063G7252' => 'pso', 'PSO170G4778' => 'pso', 'PSO210G2249' => 'pso', 'PSO339G2411' => 'pso', 'PSO339G2457' => 'pso', 'PSO339G2854' => 'pso', 'PSO339G4288' => 'pso', 'PSO339G4615' => 'pso', 'PSO384G2796' => 'pso', 'PSO384G2940' => 'pso', 'PSO384G4227' => 'pso', 'PSO478G1425' => 'pso', 'PSO541G3863' => 'pso', 'PSO675G0507' => 'pso', 'PSO782G0338' => 'pso', 'PSO832G0644' => 'pso', 'QL01p013664' => 'qlo', 'QL01p036598' => 'qlo', 'QL05p072984' => 'qlo', 'QL08p005768' => 'qlo', 'QL08p032743' => 'qlo', 'QL93p0073_0439' => 'qlo', 'QL93p0073_0444' => 'qlo', 'RcHm_v2.0_Chr5g0002851' => 'rch', 'RcHm_v2.0_Chr5g0055201' => 'rch', 'RcHm_v2.0_Chr5g0061191' => 'rch', 'RcHm_v2.0_Chr7g0203231' => 'rch', 'Rhsim01G0208100' => 'rsi', 'Rhsim01G0208200' => 'rsi', 'Rhsim02G0106500' => 'rsi', 'Rhsim03G0107900' => 'rsi', 'Rhsim06G0163400' => 'rsi', 'Rhsim13G0105200' => 'rsi', 'Sabra04G0006300' => 'sbr', 'Sabra04G0127000' => 'sbr', 'Sabra08G0148700' => 'sbr', 'Sabra09G0117400' => 'sbr', 'SalBow1G3326' => 'sbo', 'SalBow3G3228' => 'sbo', 'SalBow6G1634' => 'sbo', 'SalBow6G3603' => 'sbo', 'SalBow6G5266' => 'sbo', 'SalBow7G2265' => 'sbo', 'SalBow8G0850' => 'sbo', 'SalBow8G2592' => 'sbo', 'Sc05g0009240' => 'sci', 'Sc12g0002300' => 'sci', 'Sc21g0000100' => 'sci', 'Sc21g0004720' => 'sci', 'Sed0002949' => 'sed', 'Sed0004114' => 'sed', 'Sed0004306' => 'sed', 'Sed0006172' => 'sed', 'Sed0008413' => 'sed', 'Sed0013809' => 'sed', 'Sed0019556' => 'sed', 'SEGI_03570' => 'sgi', 'SEGI_07859' => 'sgi', 'SEGI_15042' => 'sgi', 'SEGI_16263' => 'sgi', 'SEGI_16552' => 'sgi', 'SEGI_24331' => 'sgi', 'SEGI_27316' => 'sgi', 'SEGI_29521' => 'sgi', 'SEGI_41342' => 'sgi', 'SGA_v2.0_scaffold27G11617' => 'sas', 'SGA_v2.0_scaffold316G48428' => 'sas', 'SGA_v2.0_scaffold49G18261' => 'sas', 'SGA_v2.0_scaffold7G03831' => 'sas', 'SGA_v2.0_scaffold93G28359' => 'sas', 'SHI02210' => 'shi', 'SHI06028' => 'shi', 'SHI06321' => 'shi', 'SMO111G0012' => 'smo', 'SMO228G0080' => 'smo', 'SMO356G0756' => 'smo', 'Solyc02g080620.3' => 'sly', 'Solyc06g074530.1' => 'sly', 'Solyc11g066890.1' => 'sly', 'Solyc11g072520.3' => 'sly', 'Sopen02g025330' => 'spe', 'Sopen06g031000' => 'spe', 'Sopen09g008240' => 'spe', 'Sopen09g025210' => 'spe', 'Sopen11g026600' => 'spe', 'Sopen11g030170' => 'spe', 'Sp1g10420' => 'spa', 'Sp3g06570' => 'spa', 'Sp4g10660' => 'spa', 'Sp5g16460' => 'spa', 'Sp6g22710' => 'spa', 'TAR365G0112' => 'tar', 'TAR369G0717' => 'tar', 'TAR374G0976' => 'tar', 'TAR623G1128' => 'tar', 'TAR626G1937' => 'tar', 'TAR627G0123' => 'tar', 'TAR628G0305' => 'tar', 'TAR636G1176' => 'tar', 'TAR636G2442' => 'tar', 'THA.LOC104800556' => 'tha', 'THA.LOC104809501' => 'tha', 'THA.LOC104815126' => 'tha', 'THA.LOC104815732' => 'tha', 'THA.LOC104823528' => 'tha', 'Thecc.02G365600' => 'tca', 'Thecc.06G222300' => 'tca', 'Thecc.09G261800' => 'tca', 'Thecc.09G291400' => 'tca', 'Thhalv10003028m.g' => 'esa', 'Thhalv10007886m.g' => 'esa', 'Thhalv10016085m.g' => 'esa', 'Thhalv10016681m.g' => 'esa', 'Thhalv10020951m.g' => 'esa', 'TPR.G15598' => 'tpr', 'TPR.G29305' => 'tpr', 'TPR.G32395' => 'tpr', 'TPR.G36998' => 'tpr', 'TPR.G4227' => 'tpr', 'TWI18G1433' => 'twi', 'TWI31G0755' => 'twi', 'TWI38G0912' => 'twi', 'TWI75G1097' => 'twi', 'TWI75G1619' => 'twi', 'TWI79G1336' => 'twi', 'unitig_0.g943' => 'ugi', 'unitig_0.g944' => 'ugi', 'unitig_22.g6646' => 'ugi', 'unitig_37.g12681' => 'ugi', 'unitig_8.g3290' => 'ugi', 'vmacro03278' => 'vma', 'vmacro12197' => 'vma', 'vmacro14478' => 'vma', 'vmacro15787' => 'vma', 'vmacro15789' => 'vma', 'vmacro15790' => 'vma', 'vmacro15806' => 'vma', 'vmacro22907' => 'vma', 'vmacro22908' => 'vma', 'vmacro22909' => 'vma', 'vmacro23108' => 'vma', 'VMungo0540G0540' => 'vmu', 'VMungo0540G2468' => 'vmu', 'VMungo1080G0390' => 'vmu', 'VMungo1080G1165' => 'vmu', 'VMungo1127G0170' => 'vmu', 'VMungo1127G2099' => 'vmu', 'VMungo1215G3013' => 'vmu', 'Zm00001eb013110' => 'zma', 'Zm00001eb084260' => 'zma', 'Zm00001eb096110' => 'zma', 'Zm00001eb217510' => 'zma', 'Zm00001eb322550' => 'zma', 'Zm00001eb390770' => 'zma', 'Zm00001eb397170' => 'zma', 'Zm00001eb404610' => 'zma', 'Zm00001eb421790' => 'zma' ), 'gf_id' => 'HOM05D000911', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000911' ), 'data_identifier' => 'HOM05D000911', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000911', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27780' => 'bna', 'A03p35380' => 'bna', 'A04p21160' => 'bna', 'A05p40570' => 'bna', 'A06p26900' => 'bna', 'A08p33230' => 'bna', 'A09p65960' => 'bna', 'A10p18290' => 'bna', 'Aa31LG1G12990' => 'aar', 'Aa31LG1G2980' => 'aar', 'Aa31LG4G14320' => 'aar', 'Aa31LG7G11800' => 'aar', 'Aa31sc36G50' => 'aar', 'Aa31sc36G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3721' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5459' => 'aag', 'Actinidia03028' => 'ach', 'Actinidia03753' => 'ach', 'Actinidia04187' => 'ach', 'Actinidia05509' => 'ach', 'Actinidia24180' => 'ach', 'Actinidia26906' => 'ach', 'Actinidia37097' => 'ach', 'Actinidia38249' => 'ach', 'Ah.01g003470' => 'amhyb', 'Ah.01g004580' => 'amhyb', 'Ah.01g014850' => 'amhyb', 'Ah.01g016830' => 'amhyb', 'Ah.14g088000' => 'amhyb', 'AL1G22980' => 'aly', 'AL3G18990' => 'aly', 'AL4G22440' => 'aly', 'AL4G33180' => 'aly', 'AL5G22920' => 'aly', 'AL6G33660' => 'aly', 'AL8G20720' => 'aly', 'Aqoxy1G00935' => 'aox', 'Aqoxy1G02094' => 'aox', 'Aqoxy2G01239' => 'aox', 'Aqoxy4G01870' => 'aox', 'Aqoxy7G00450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.36ZVTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71EM27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5D6C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH3WRE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3NCM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RIM768' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YB5YRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z36GDV' => 'arhy', 'AT1G08250' => 'ath', 'AT1G11790' => 'ath', 'AT2G27820' => 'ath', 'AT3G07630' => 'ath', 'AT3G44720' => 'ath', 'AT5G22630' => 'ath', 'ATR0693G304' => 'atr', 'ATR0794G109' => 'atr', 'ATR0820G120' => 'atr', 'ATR1159G064' => 'atr', 'Atru.chr10.2239' => 'acertr', 'Atru.chr3.3371' => 'acertr', 'Atru.chr6.3202' => 'acertr', 'AUR62006499' => 'cqu', 'AUR62012718' => 'cqu', 'AUR62021938' => 'cqu', 'AUR62023932' => 'cqu', 'AUR62025034' => 'cqu', 'AUR62025035' => 'cqu', 'AUR62038307' => 'cqu', 'AUR62043466' => 'cqu', 'BcaB02g10748' => 'bca', 'BcaB03g13231' => 'bca', 'BcaB03g14689' => 'bca', 'BcaB05g22716' => 'bca', 'BcaB06g28172' => 'bca', 'BcaB08g36413' => 'bca', 'BcaC01g02186' => 'bca', 'BcaC01g04272' => 'bca', 'BcaC02g08080' => 'bca', 'BcaC02g08227' => 'bca', 'BcaC03g13901' => 'bca', 'BcaC04g19593' => 'bca', 'BcaC04g20874' => 'bca', 'BcaC05g29557' => 'bca', 'BcaC06g35505' => 'bca', 'BcaC07g41954' => 'bca', 'BcaC07g41955' => 'bca', 'BcaC07g41956' => 'bca', 'BcaC07g42519' => 'bca', 'BcaC07g42520' => 'bca', 'BcaC07g42523' => 'bca', 'BcaC07g42524' => 'bca', 'BcaC07g42525' => 'bca', 'BcaC08g47480' => 'bca', 'BcaC08g47481' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00530' => 'bna', 'BolC2t07178H' => 'bol', 'BolC3t16567H' => 'bol', 'BolC4t27234H' => 'bol', 'BolC5t29728H' => 'bol', 'BolC5t34622H' => 'bol', 'BolC6t40321H' => 'bol', 'BolC7t42028H' => 'bol', 'BolC8t49125H' => 'bol', 'BolC8t52538H' => 'bol', 'BolC8t52539H' => 'bol', 'BolC9t56681H' => 'bol', 'BolC9t58266H' => 'bol', 'BolSC21t60294H' => 'bol', 'BraA02t05670Z' => 'bra', 'BraA03t12716Z' => 'bra', 'BraA04t17685Z' => 'bra', 'BraA05t22788Z' => 'bra', 'BraA06t24032Z' => 'bra', 'BraA06t25625Z' => 'bra', 'BraA07t27930Z' => 'bra', 'BraA08t35242Z' => 'bra', 'BraA09t38609Z' => 'bra', 'BraA10t43905Z' => 'bra', 'C02p11060' => 'bna', 'C03p42990' => 'bna', 'C03p67310' => 'bna', 'C04p56990' => 'bna', 'C04p58660' => 'bna', 'C05p09890' => 'bna', 'C05p59680' => 'bna', 'C06p19830' => 'bna', 'C06p53040' => 'bna', 'C07p15230' => 'bna', 'C08p50070' => 'bna', 'C08p50090' => 'bna', 'C09p38330' => 'bna', 'C09p53940' => 'bna', 'CAN.G1014.1' => 'can', 'CAN.G644.30' => 'can', 'CAN.G84.47' => 'can', 'CAN.G919.8' => 'can', 'CANSAT54G0113' => 'cansat', 'CANSAT54G1286' => 'cansat', 'CANSAT64G1020' => 'cansat', 'CARHR008080' => 'chi', 'CARHR008090' => 'chi', 'CARHR012130' => 'chi', 'CARHR038390' => 'chi', 'CARHR082330' => 'chi', 'CARHR120520' => 'chi', 'CARHR151470' => 'chi', 'CARHR190950' => 'chi', 'Carub.0001s0760' => 'cru', 'Carub.0001s1146' => 'cru', 'Carub.0003s0721' => 'cru', 'Carub.0004s0858' => 'cru', 'Carub.0005s1040' => 'cru', 'Carub.0006s2035' => 'cru', 'Carub.0015s0005' => 'cru', 'Ca_01607_v3' => 'car', 'Ca_01677_v3' => 'car', 'Ca_06087_v3' => 'car', 'Ca_19238_v3' => 'car', 'Ca_19373_v3' => 'car', 'Ca_21079_v3' => 'car', 'CBR_g54016' => 'cbr', 'CBR_g54018' => 'cbr', 'CBR_g54020' => 'cbr', 'Cc01_g09780' => 'ccan', 'Cc01_g11680' => 'ccan', 'Cc02_g15610' => 'ccan', 'Cc05_g04350' => 'ccan', 'Cc09_g01580' => 'ccan', 'CDE01G0795' => 'cde', 'CDE02G2024' => 'cde', 'CDE02G2260' => 'cde', 'CDE02G4561' => 'cde', 'CDE05G2733' => 'cde', 'CDE05G3422' => 'cde', 'CDE06G2003' => 'cde', 'CDE08G0576' => 'cde', 'CDE09G0048' => 'cde', 'CDE11G0805' => 'cde', 'Cfa003644' => 'cfa', 'Cfa006290' => 'cfa', 'Cfa010080' => 'cfa', 'Cfa011376' => 'cfa', 'Cfa011576' => 'cfa', 'Cfa011577' => 'cfa', 'Cfa014389' => 'cfa', 'Ciclev10006044m.g' => 'ccl', 'Ciclev10006954m.g' => 'ccl', 'Ciclev10015131m.g' => 'ccl', 'Ciclev10015580m.g' => 'ccl', 'Ciclev10028359m.g' => 'ccl', 'Ciclev10028573m.g' => 'ccl', 'CiPaw.03G159300' => 'cil', 'CiPaw.04G115100' => 'cil', 'CiPaw.09G092800' => 'cil', 'CiPaw.10G071800' => 'cil', 'CiPaw.13G105800' => 'cil', 'CiPaw.13G141000' => 'cil', 'CiPaw.14G103400' => 'cil', 'ClCG01G012700' => 'cla', 'ClCG01G012720' => 'cla', 'ClCG01G021920' => 'cla', 'ClCG02G008870' => 'cla', 'ClCG02G020840' => 'cla', 'ClCG02G021930' => 'cla', 'COL.COLO4_19302' => 'col', 'COL.COLO4_25262' => 'col', 'COL.COLO4_31788' => 'col', 'Cpa.g.c34684' => 'cpa', 'Cpa.g.c36520.1' => 'cpa', 'Cpa.g.c45626' => 'cpa', 'Cpa.g.sc121.17' => 'cpa', 'Cpa.g.sc13.22' => 'cpa', 'Cpa.g.sc87.88' => 'cpa', 'Cre06.g261800' => 'cre', 'CsaV3_1G014500' => 'csa', 'CsaV3_1G014510' => 'csa', 'CsaV3_2G034880' => 'csa', 'CsaV3_6G014760' => 'csa', 'CsaV3_6G021500' => 'csa', 'CsaV3_6G048980' => 'csa', 'CSS0002511' => 'camsi', 'CSS0007556' => 'camsi', 'CSS0008532' => 'camsi', 'CSS0009709' => 'camsi', 'CSS0010486' => 'camsi', 'CSS0016768' => 'camsi', 'CSS0023512' => 'camsi', 'CSS0025341' => 'camsi', 'CSS0027999' => 'camsi', 'CSS0028944' => 'camsi', 'CSS0032292' => 'camsi', 'CSS0032464' => 'camsi', 'CSS0037153' => 'camsi', 'CSS0039256' => 'camsi', 'CSS0048392' => 'camsi', 'CSS0050458' => 'camsi', 'DCAR_004224' => 'dca', 'DCAR_006147' => 'dca', 'DCAR_006465' => 'dca', 'DCAR_008159' => 'dca', 'DCAR_012164' => 'dca', 'DCAR_019764' => 'dca', 'Dinv05418' => 'din', 'Dinv10839' => 'din', 'Dinv12521' => 'din', 'Dinv13900' => 'din', 'Dinv29426' => 'din', 'Duzib150G0263' => 'dzi', 'Duzib168G1178' => 'dzi', 'Duzib168G1924' => 'dzi', 'Duzib170G0299' => 'dzi', 'Duzib170G0813' => 'dzi', 'Duzib235G1128' => 'dzi', 'Duzib248G1060' => 'dzi', 'ECA232G1910' => 'eca', 'ECA233G4621' => 'eca', 'ECA238G1216' => 'eca', 'ECA238G1784' => 'eca', 'ECA248G1242' => 'eca', 'EL10Ac8g20071' => 'bvu', 'EL10Ac9g21086' => 'bvu', 'EL10Ac9g22407' => 'bvu', 'EL10Ac9g22412' => 'bvu', 'Eucgr.A01119' => 'egr', 'Eucgr.E04043' => 'egr', 'Eucgr.J00428' => 'egr', 'Eucgr.J00958' => 'egr', 'FAN11G3091' => 'fan', 'FAN11G3651' => 'fan', 'FAN16G2566' => 'fan', 'FAN21G3155' => 'fan', 'FAN21G3400' => 'fan', 'FAN21G3543' => 'fan', 'FAN25G0234' => 'fan', 'FAN25G1422' => 'fan', 'FAN25G3392' => 'fan', 'FvH4_3g01940' => 'fve', 'FvH4_3g29870' => 'fve', 'FvH4_3g33680' => 'fve', 'Glyma.09G004200' => 'gma', 'Glyma.11G151288' => 'gma', 'Glyma.11G189100' => 'gma', 'Glyma.12G072500' => 'gma', 'Glyma.12G085500' => 'gma', 'Glyma.12G181800' => 'gma', 'Glyma.12G193000' => 'gma', 'Glyma.13G309300' => 'gma', 'Glyma.13G319000' => 'gma', 'Glyma.17G012600' => 'gma', 'Gohir.A06G148600' => 'ghi', 'Gohir.A07G115800' => 'ghi', 'Gohir.A08G003600' => 'ghi', 'Gohir.A09G093300' => 'ghi', 'Gohir.A09G105400' => 'ghi', 'Gohir.A09G105500' => 'ghi', 'Gohir.D06G154600' => 'ghi', 'Gohir.D07G120200' => 'ghi', 'Gohir.D08G013900' => 'ghi', 'Gohir.D09G093100' => 'ghi', 'Gohir.D09G102200' => 'ghi', 'Gohir.D09G102300' => 'ghi', 'Gorai.001G129400' => 'gra', 'Gorai.004G008200' => 'gra', 'Gorai.006G109800' => 'gra', 'Gorai.006G119500' => 'gra', 'Gorai.006G121300' => 'gra', 'Gorai.010G180700' => 'gra', 'GSVIVG01012716001' => 'vvi', 'GSVIVG01025118001' => 'vvi', 'GSVIVG01030439001' => 'vvi', 'GSVIVG01031397001' => 'vvi', 'HanXRQChr01g0004201' => 'han', 'HanXRQChr02g0054941' => 'han', 'HanXRQChr05g0141811' => 'han', 'HanXRQChr07g0197751' => 'han', 'HanXRQChr11g0346691' => 'han', 'HanXRQChr13g0396971' => 'han', 'HanXRQChr14g0432951' => 'han', 'HanXRQChr14g0452001' => 'han', 'HanXRQChr15g0496681' => 'han', 'HanXRQChr17g0557491' => 'han', 'HanXRQChr17g0557501' => 'han', 'Haze_06809' => 'cav', 'Haze_12852' => 'cav', 'Haze_15850' => 'cav', 'Haze_23446' => 'cav', 'Haze_23942' => 'cav', 'Haze_23943' => 'cav', 'Hma1.2p1_0091F.1_g046450' => 'hma', 'Hma1.2p1_0128F.1_g059910' => 'hma', 'Hma1.2p1_0249F.1_g102260' => 'hma', 'Hma1.2p1_0453F.1_g156190' => 'hma', 'Hma1.2p1_0695F.1_g204380' => 'hma', 'Hma1.2p1_0749F.1_g212650' => 'hma', 'Hma1.2p1_2156F.1_g315420' => 'hma', 'Hma1.2p1_2686F.1_g326940' => 'hma', 'HPP92_006428' => 'vpl', 'HPP92_012069' => 'vpl', 'HPP92_014129' => 'vpl', 'HPP92_014133' => 'vpl', 'HPP92_017315' => 'vpl', 'HPP92_026445' => 'vpl', 'HPP92_026446' => 'vpl', 'Hund00774' => 'sun', 'Hund07682' => 'sun', 'Hund21413' => 'sun', 'Hund23462' => 'sun', 'Hund23463' => 'sun', 'Lalb_Chr03g0027911' => 'lal', 'Lalb_Chr13g0304271' => 'lal', 'Lalb_Chr19g0137471' => 'lal', 'Lalb_Chr22g0350651' => 'lal', 'Lalb_Chr24g0395151' => 'lal', 'Lj1A1231T40' => 'lonja', 'Lj1A221T48' => 'lonja', 'Lj1C924T12' => 'lonja', 'Lj2C993G6' => 'lonja', 'Lj3g0005790' => 'lja', 'Lj3g0015432' => 'lja', 'Lj3g0017722' => 'lja', 'Lj3g0018497' => 'lja', 'Lj4g0025071' => 'lja', 'Lsat_1_v5_gn_1_129680' => 'lsa', 'Lsat_1_v5_gn_2_25321' => 'lsa', 'Lsat_1_v5_gn_2_95461' => 'lsa', 'Lsat_1_v5_gn_4_159620' => 'lsa', 'Lsat_1_v5_gn_6_41301' => 'lsa', 'Lsat_1_v5_gn_6_74660' => 'lsa', 'Lsat_1_v5_gn_7_11520' => 'lsa', 'Lsat_1_v5_gn_9_67680' => 'lsa', 'Manes.04G008300' => 'mes', 'Manes.04G008400' => 'mes', 'Manes.04G026500' => 'mes', 'Manes.10G135300' => 'mes', 'Manes.11G157300' => 'mes', 'Manes.12G074000' => 'mes', 'Manes.16G006200' => 'mes', 'Manes.17G026400' => 'mes', 'Mapoly0024s0086' => 'mpo', 'Mapoly0024s0087' => 'mpo', 'Mapoly0071s0057' => 'mpo', 'Mapoly0204s0012' => 'mpo', 'MBI04_g37681_MAGBIO' => 'mbi', 'MBI05_g17779_MAGBIO' => 'mbi', 'MBI12_g31184_MAGBIO' => 'mbi', 'MBI17_g11083_MAGBIO' => 'mbi', 'MBI18_g03883_MAGBIO' => 'mbi', 'MBI18_g28940_MAGBIO' => 'mbi', 'MCO01G690' => 'mco', 'MD03G1109900' => 'mdo', 'MD03G1134800' => 'mdo', 'MD05G1348000' => 'mdo', 'MD10G1322400' => 'mdo', 'MD11G1123300' => 'mdo', 'MD11G1157600' => 'mdo', 'Medtr2g084875' => 'mtr', 'Medtr2g088130' => 'mtr', 'Medtr4g055310' => 'mtr', 'Medtr4g061070' => 'mtr', 'Medtr4g132250' => 'mtr', 'MELO3C004795.2' => 'cme', 'MELO3C004797.2' => 'cme', 'MELO3C007396.2' => 'cme', 'MELO3C019277.2' => 'cme', 'MELO3C021449.2' => 'cme', 'MELO3C025736.2' => 'cme', 'Migut.D02175' => 'egut', 'Migut.H01573' => 'egut', 'Migut.M01327' => 'egut', 'Migut.N02513' => 'egut', 'MSTRG.14638' => 'ama', 'MSTRG.18632' => 'ama', 'MSTRG.7203' => 'ama', 'Nitab4.5_0000533g0140' => 'nta', 'Nitab4.5_0000888g0150' => 'nta', 'Nitab4.5_0001453g0040' => 'nta', 'Nitab4.5_0002827g0090' => 'nta', 'Nitab4.5_0003082g0040' => 'nta', 'Nitab4.5_0007799g0040' => 'nta', 'Nitab4.5_0008983g0010' => 'nta', 'Nitab4.5_0009017g0020' => 'nta', 'Nn1g02132' => 'nnu', 'Nn1g03492' => 'nnu', 'Nn1g03493' => 'nnu', 'Nn1g03494' => 'nnu', 'Nn1g07164' => 'nnu', 'Nn1g07291' => 'nnu', 'Nn2g10655' => 'nnu', 'Nn2g11652' => 'nnu', 'Nn2g14008' => 'nnu', 'Nn3g17476' => 'nnu', 'Nn3g17477' => 'nnu', 'Nn4g22370' => 'nnu', 'Nn4g25255' => 'nnu', 'Nn5g27755' => 'nnu', 'Nn6g34260' => 'nnu', 'Nn6g35041' => 'nnu', 'Oeu005924.1' => 'oeu', 'Oeu008383.1' => 'oeu', 'Oeu014928.1' => 'oeu', 'Oeu019889.1' => 'oeu', 'Oeu022271.1' => 'oeu', 'Oeu025271.1' => 'oeu', 'Oeu036302.1' => 'oeu', 'Oeu044100.1' => 'oeu', 'Os01g0528300' => 'osa', 'Os03g0286200' => 'osa', 'Os04g0406600' => 'osa', 'Os07g0512000' => 'osa', 'Os07g0694600' => 'osa', 'Os08g0411000' => 'osa', 'Os09g0565700' => 'osa', 'Os09g0566050' => 'osa', 'Os10g0523700' => 'osa', 'Peaxi162Scf00002g00514' => 'pax', 'Peaxi162Scf00047g01817' => 'pax', 'Peaxi162Scf00114g00001' => 'pax', 'Peaxi162Scf00147g00613' => 'pax', 'Peaxi162Scf00389g00425' => 'pax', 'PGR042G1139' => 'pgr', 'PGR042G3273' => 'pgr', 'PGR102G2180' => 'pgr', 'PGR119G0234' => 'pgr', 'PGR119G0668' => 'pgr', 'PGSC0003DMG400007122' => 'stu', 'PGSC0003DMG400016478' => 'stu', 'PGSC0003DMG400025374' => 'stu', 'PGSC0003DMG400026536' => 'stu', 'Phvul.003G079600' => 'pvu', 'Phvul.005G115600' => 'pvu', 'Phvul.005G127100' => 'pvu', 'Phvul.006G149500' => 'pvu', 'Phvul.006G149600' => 'pvu', 'Phvul.011G071800' => 'pvu', 'Phvul.011G090400' => 'pvu', 'Potri.004G013400' => 'ptr', 'Potri.004G188100' => 'ptr', 'Potri.008G195500' => 'ptr', 'Potri.009G148800' => 'ptr', 'Potri.011G004700' => 'ptr', 'Pp3c17_22810' => 'ppa', 'Pp3c18_4480' => 'ppa', 'Pp3c19_13030' => 'ppa', 'Pp3c1_33620' => 'ppa', 'Pp3c2_9380' => 'ppa', 'PRCOL_00001023' => 'pco', 'Prupe.3G216300' => 'ppe', 'Prupe.4G019500' => 'ppe', 'Prupe.6G092500' => 'ppe', 'Prupe.6G119200' => 'ppe', 'Psat0s1945g0080' => 'psa', 'Psat0s4167g0040' => 'psa', 'Psat1g185800' => 'psa', 'Psat4g006440' => 'psa', 'Psat4g006480' => 'psa', 'Psat4g168120' => 'psa', 'Psat5g255680' => 'psa', 'Psat5g261760' => 'psa', 'Psat7g222120' => 'psa', 'PSO063G7252' => 'pso', 'PSO170G4778' => 'pso', 'PSO210G2249' => 'pso', 'PSO339G2411' => 'pso', 'PSO339G2457' => 'pso', 'PSO339G2854' => 'pso', 'PSO339G4288' => 'pso', 'PSO339G4615' => 'pso', 'PSO384G2796' => 'pso', 'PSO384G2940' => 'pso', 'PSO384G4227' => 'pso', 'PSO478G1425' => 'pso', 'PSO541G3863' => 'pso', 'PSO675G0507' => 'pso', 'PSO782G0338' => 'pso', 'PSO832G0644' => 'pso', 'QL01p013664' => 'qlo', 'QL01p036598' => 'qlo', 'QL05p072984' => 'qlo', 'QL08p005768' => 'qlo', 'QL08p032743' => 'qlo', 'QL93p0073_0439' => 'qlo', 'QL93p0073_0444' => 'qlo', 'RcHm_v2.0_Chr5g0002851' => 'rch', 'RcHm_v2.0_Chr5g0055201' => 'rch', 'RcHm_v2.0_Chr5g0061191' => 'rch', 'RcHm_v2.0_Chr7g0203231' => 'rch', 'Rhsim01G0208100' => 'rsi', 'Rhsim01G0208200' => 'rsi', 'Rhsim02G0106500' => 'rsi', 'Rhsim03G0107900' => 'rsi', 'Rhsim06G0163400' => 'rsi', 'Rhsim13G0105200' => 'rsi', 'Sabra04G0006300' => 'sbr', 'Sabra04G0127000' => 'sbr', 'Sabra08G0148700' => 'sbr', 'Sabra09G0117400' => 'sbr', 'SalBow1G3326' => 'sbo', 'SalBow3G3228' => 'sbo', 'SalBow6G1634' => 'sbo', 'SalBow6G3603' => 'sbo', 'SalBow6G5266' => 'sbo', 'SalBow7G2265' => 'sbo', 'SalBow8G0850' => 'sbo', 'SalBow8G2592' => 'sbo', 'Sc05g0009240' => 'sci', 'Sc12g0002300' => 'sci', 'Sc21g0000100' => 'sci', 'Sc21g0004720' => 'sci', 'Sed0002949' => 'sed', 'Sed0004114' => 'sed', 'Sed0004306' => 'sed', 'Sed0006172' => 'sed', 'Sed0008413' => 'sed', 'Sed0013809' => 'sed', 'Sed0019556' => 'sed', 'SEGI_03570' => 'sgi', 'SEGI_07859' => 'sgi', 'SEGI_15042' => 'sgi', 'SEGI_16263' => 'sgi', 'SEGI_16552' => 'sgi', 'SEGI_24331' => 'sgi', 'SEGI_27316' => 'sgi', 'SEGI_29521' => 'sgi', 'SEGI_41342' => 'sgi', 'SGA_v2.0_scaffold27G11617' => 'sas', 'SGA_v2.0_scaffold316G48428' => 'sas', 'SGA_v2.0_scaffold49G18261' => 'sas', 'SGA_v2.0_scaffold7G03831' => 'sas', 'SGA_v2.0_scaffold93G28359' => 'sas', 'SHI02210' => 'shi', 'SHI06028' => 'shi', 'SHI06321' => 'shi', 'SMO111G0012' => 'smo', 'SMO228G0080' => 'smo', 'SMO356G0756' => 'smo', 'Solyc02g080620.3' => 'sly', 'Solyc06g074530.1' => 'sly', 'Solyc11g066890.1' => 'sly', 'Solyc11g072520.3' => 'sly', 'Sopen02g025330' => 'spe', 'Sopen06g031000' => 'spe', 'Sopen09g008240' => 'spe', 'Sopen09g025210' => 'spe', 'Sopen11g026600' => 'spe', 'Sopen11g030170' => 'spe', 'Sp1g10420' => 'spa', 'Sp3g06570' => 'spa', 'Sp4g10660' => 'spa', 'Sp5g16460' => 'spa', 'Sp6g22710' => 'spa', 'TAR365G0112' => 'tar', 'TAR369G0717' => 'tar', 'TAR374G0976' => 'tar', 'TAR623G1128' => 'tar', 'TAR626G1937' => 'tar', 'TAR627G0123' => 'tar', 'TAR628G0305' => 'tar', 'TAR636G1176' => 'tar', 'TAR636G2442' => 'tar', 'THA.LOC104800556' => 'tha', 'THA.LOC104809501' => 'tha', 'THA.LOC104815126' => 'tha', 'THA.LOC104815732' => 'tha', 'THA.LOC104823528' => 'tha', 'Thecc.02G365600' => 'tca', 'Thecc.06G222300' => 'tca', 'Thecc.09G261800' => 'tca', 'Thecc.09G291400' => 'tca', 'Thhalv10003028m.g' => 'esa', 'Thhalv10007886m.g' => 'esa', 'Thhalv10016085m.g' => 'esa', 'Thhalv10016681m.g' => 'esa', 'Thhalv10020951m.g' => 'esa', 'TPR.G15598' => 'tpr', 'TPR.G29305' => 'tpr', 'TPR.G32395' => 'tpr', 'TPR.G36998' => 'tpr', 'TPR.G4227' => 'tpr', 'TWI18G1433' => 'twi', 'TWI31G0755' => 'twi', 'TWI38G0912' => 'twi', 'TWI75G1097' => 'twi', 'TWI75G1619' => 'twi', 'TWI79G1336' => 'twi', 'unitig_0.g943' => 'ugi', 'unitig_0.g944' => 'ugi', 'unitig_22.g6646' => 'ugi', 'unitig_37.g12681' => 'ugi', 'unitig_8.g3290' => 'ugi', 'vmacro03278' => 'vma', 'vmacro12197' => 'vma', 'vmacro14478' => 'vma', 'vmacro15787' => 'vma', 'vmacro15789' => 'vma', 'vmacro15790' => 'vma', 'vmacro15806' => 'vma', 'vmacro22907' => 'vma', 'vmacro22908' => 'vma', 'vmacro22909' => 'vma', 'vmacro23108' => 'vma', 'VMungo0540G0540' => 'vmu', 'VMungo0540G2468' => 'vmu', 'VMungo1080G0390' => 'vmu', 'VMungo1080G1165' => 'vmu', 'VMungo1127G0170' => 'vmu', 'VMungo1127G2099' => 'vmu', 'VMungo1215G3013' => 'vmu', 'Zm00001eb013110' => 'zma', 'Zm00001eb084260' => 'zma', 'Zm00001eb096110' => 'zma', 'Zm00001eb217510' => 'zma', 'Zm00001eb322550' => 'zma', 'Zm00001eb390770' => 'zma', 'Zm00001eb397170' => 'zma', 'Zm00001eb404610' => 'zma', 'Zm00001eb421790' => 'zma' ) $gf_id = 'HOM05D000911' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000911' ) $data_identifier = 'HOM05D000911' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 16, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 5, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 6, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 8, 'nnu' => (int) 16, 'oeu' => (int) 8, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 5, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 16, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421790' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000911', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27780' => 'bna', 'A03p35380' => 'bna', 'A04p21160' => 'bna', 'A05p40570' => 'bna', 'A06p26900' => 'bna', 'A08p33230' => 'bna', 'A09p65960' => 'bna', 'A10p18290' => 'bna', 'Aa31LG1G12990' => 'aar', 'Aa31LG1G2980' => 'aar', 'Aa31LG4G14320' => 'aar', 'Aa31LG7G11800' => 'aar', 'Aa31sc36G50' => 'aar', 'Aa31sc36G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3721' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5459' => 'aag', 'Actinidia03028' => 'ach', 'Actinidia03753' => 'ach', 'Actinidia04187' => 'ach', 'Actinidia05509' => 'ach', 'Actinidia24180' => 'ach', 'Actinidia26906' => 'ach', 'Actinidia37097' => 'ach', 'Actinidia38249' => 'ach', 'Ah.01g003470' => 'amhyb', 'Ah.01g004580' => 'amhyb', 'Ah.01g014850' => 'amhyb', 'Ah.01g016830' => 'amhyb', 'Ah.14g088000' => 'amhyb', 'AL1G22980' => 'aly', 'AL3G18990' => 'aly', 'AL4G22440' => 'aly', 'AL4G33180' => 'aly', 'AL5G22920' => 'aly', 'AL6G33660' => 'aly', 'AL8G20720' => 'aly', 'Aqoxy1G00935' => 'aox', 'Aqoxy1G02094' => 'aox', 'Aqoxy2G01239' => 'aox', 'Aqoxy4G01870' => 'aox', 'Aqoxy7G00450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.36ZVTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71EM27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5D6C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH3WRE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3NCM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RIM768' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YB5YRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z36GDV' => 'arhy', 'AT1G08250' => 'ath', 'AT1G11790' => 'ath', 'AT2G27820' => 'ath', 'AT3G07630' => 'ath', 'AT3G44720' => 'ath', 'AT5G22630' => 'ath', 'ATR0693G304' => 'atr', 'ATR0794G109' => 'atr', 'ATR0820G120' => 'atr', 'ATR1159G064' => 'atr', 'Atru.chr10.2239' => 'acertr', 'Atru.chr3.3371' => 'acertr', 'Atru.chr6.3202' => 'acertr', 'AUR62006499' => 'cqu', 'AUR62012718' => 'cqu', 'AUR62021938' => 'cqu', 'AUR62023932' => 'cqu', 'AUR62025034' => 'cqu', 'AUR62025035' => 'cqu', 'AUR62038307' => 'cqu', 'AUR62043466' => 'cqu', 'BcaB02g10748' => 'bca', 'BcaB03g13231' => 'bca', 'BcaB03g14689' => 'bca', 'BcaB05g22716' => 'bca', 'BcaB06g28172' => 'bca', 'BcaB08g36413' => 'bca', 'BcaC01g02186' => 'bca', 'BcaC01g04272' => 'bca', 'BcaC02g08080' => 'bca', 'BcaC02g08227' => 'bca', 'BcaC03g13901' => 'bca', 'BcaC04g19593' => 'bca', 'BcaC04g20874' => 'bca', 'BcaC05g29557' => 'bca', 'BcaC06g35505' => 'bca', 'BcaC07g41954' => 'bca', 'BcaC07g41955' => 'bca', 'BcaC07g41956' => 'bca', 'BcaC07g42519' => 'bca', 'BcaC07g42520' => 'bca', 'BcaC07g42523' => 'bca', 'BcaC07g42524' => 'bca', 'BcaC07g42525' => 'bca', 'BcaC08g47480' => 'bca', 'BcaC08g47481' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00530' => 'bna', 'BolC2t07178H' => 'bol', 'BolC3t16567H' => 'bol', 'BolC4t27234H' => 'bol', 'BolC5t29728H' => 'bol', 'BolC5t34622H' => 'bol', 'BolC6t40321H' => 'bol', 'BolC7t42028H' => 'bol', 'BolC8t49125H' => 'bol', 'BolC8t52538H' => 'bol', 'BolC8t52539H' => 'bol', 'BolC9t56681H' => 'bol', 'BolC9t58266H' => 'bol', 'BolSC21t60294H' => 'bol', 'BraA02t05670Z' => 'bra', 'BraA03t12716Z' => 'bra', 'BraA04t17685Z' => 'bra', 'BraA05t22788Z' => 'bra', 'BraA06t24032Z' => 'bra', 'BraA06t25625Z' => 'bra', 'BraA07t27930Z' => 'bra', 'BraA08t35242Z' => 'bra', 'BraA09t38609Z' => 'bra', 'BraA10t43905Z' => 'bra', 'C02p11060' => 'bna', 'C03p42990' => 'bna', 'C03p67310' => 'bna', 'C04p56990' => 'bna', 'C04p58660' => 'bna', 'C05p09890' => 'bna', 'C05p59680' => 'bna', 'C06p19830' => 'bna', 'C06p53040' => 'bna', 'C07p15230' => 'bna', 'C08p50070' => 'bna', 'C08p50090' => 'bna', 'C09p38330' => 'bna', 'C09p53940' => 'bna', 'CAN.G1014.1' => 'can', 'CAN.G644.30' => 'can', 'CAN.G84.47' => 'can', 'CAN.G919.8' => 'can', 'CANSAT54G0113' => 'cansat', 'CANSAT54G1286' => 'cansat', 'CANSAT64G1020' => 'cansat', 'CARHR008080' => 'chi', 'CARHR008090' => 'chi', 'CARHR012130' => 'chi', 'CARHR038390' => 'chi', 'CARHR082330' => 'chi', 'CARHR120520' => 'chi', 'CARHR151470' => 'chi', 'CARHR190950' => 'chi', 'Carub.0001s0760' => 'cru', 'Carub.0001s1146' => 'cru', 'Carub.0003s0721' => 'cru', 'Carub.0004s0858' => 'cru', 'Carub.0005s1040' => 'cru', 'Carub.0006s2035' => 'cru', 'Carub.0015s0005' => 'cru', 'Ca_01607_v3' => 'car', 'Ca_01677_v3' => 'car', 'Ca_06087_v3' => 'car', 'Ca_19238_v3' => 'car', 'Ca_19373_v3' => 'car', 'Ca_21079_v3' => 'car', 'CBR_g54016' => 'cbr', 'CBR_g54018' => 'cbr', 'CBR_g54020' => 'cbr', 'Cc01_g09780' => 'ccan', 'Cc01_g11680' => 'ccan', 'Cc02_g15610' => 'ccan', 'Cc05_g04350' => 'ccan', 'Cc09_g01580' => 'ccan', 'CDE01G0795' => 'cde', 'CDE02G2024' => 'cde', 'CDE02G2260' => 'cde', 'CDE02G4561' => 'cde', 'CDE05G2733' => 'cde', 'CDE05G3422' => 'cde', 'CDE06G2003' => 'cde', 'CDE08G0576' => 'cde', 'CDE09G0048' => 'cde', 'CDE11G0805' => 'cde', 'Cfa003644' => 'cfa', 'Cfa006290' => 'cfa', 'Cfa010080' => 'cfa', 'Cfa011376' => 'cfa', 'Cfa011576' => 'cfa', 'Cfa011577' => 'cfa', 'Cfa014389' => 'cfa', 'Ciclev10006044m.g' => 'ccl', 'Ciclev10006954m.g' => 'ccl', 'Ciclev10015131m.g' => 'ccl', 'Ciclev10015580m.g' => 'ccl', 'Ciclev10028359m.g' => 'ccl', 'Ciclev10028573m.g' => 'ccl', 'CiPaw.03G159300' => 'cil', 'CiPaw.04G115100' => 'cil', 'CiPaw.09G092800' => 'cil', 'CiPaw.10G071800' => 'cil', 'CiPaw.13G105800' => 'cil', 'CiPaw.13G141000' => 'cil', 'CiPaw.14G103400' => 'cil', 'ClCG01G012700' => 'cla', 'ClCG01G012720' => 'cla', 'ClCG01G021920' => 'cla', 'ClCG02G008870' => 'cla', 'ClCG02G020840' => 'cla', 'ClCG02G021930' => 'cla', 'COL.COLO4_19302' => 'col', 'COL.COLO4_25262' => 'col', 'COL.COLO4_31788' => 'col', 'Cpa.g.c34684' => 'cpa', 'Cpa.g.c36520.1' => 'cpa', 'Cpa.g.c45626' => 'cpa', 'Cpa.g.sc121.17' => 'cpa', 'Cpa.g.sc13.22' => 'cpa', 'Cpa.g.sc87.88' => 'cpa', 'Cre06.g261800' => 'cre', 'CsaV3_1G014500' => 'csa', 'CsaV3_1G014510' => 'csa', 'CsaV3_2G034880' => 'csa', 'CsaV3_6G014760' => 'csa', 'CsaV3_6G021500' => 'csa', 'CsaV3_6G048980' => 'csa', 'CSS0002511' => 'camsi', 'CSS0007556' => 'camsi', 'CSS0008532' => 'camsi', 'CSS0009709' => 'camsi', 'CSS0010486' => 'camsi', 'CSS0016768' => 'camsi', 'CSS0023512' => 'camsi', 'CSS0025341' => 'camsi', 'CSS0027999' => 'camsi', 'CSS0028944' => 'camsi', 'CSS0032292' => 'camsi', 'CSS0032464' => 'camsi', 'CSS0037153' => 'camsi', 'CSS0039256' => 'camsi', 'CSS0048392' => 'camsi', 'CSS0050458' => 'camsi', 'DCAR_004224' => 'dca', 'DCAR_006147' => 'dca', 'DCAR_006465' => 'dca', 'DCAR_008159' => 'dca', 'DCAR_012164' => 'dca', 'DCAR_019764' => 'dca', 'Dinv05418' => 'din', 'Dinv10839' => 'din', 'Dinv12521' => 'din', 'Dinv13900' => 'din', 'Dinv29426' => 'din', 'Duzib150G0263' => 'dzi', 'Duzib168G1178' => 'dzi', 'Duzib168G1924' => 'dzi', 'Duzib170G0299' => 'dzi', 'Duzib170G0813' => 'dzi', 'Duzib235G1128' => 'dzi', 'Duzib248G1060' => 'dzi', 'ECA232G1910' => 'eca', 'ECA233G4621' => 'eca', 'ECA238G1216' => 'eca', 'ECA238G1784' => 'eca', 'ECA248G1242' => 'eca', 'EL10Ac8g20071' => 'bvu', 'EL10Ac9g21086' => 'bvu', 'EL10Ac9g22407' => 'bvu', 'EL10Ac9g22412' => 'bvu', 'Eucgr.A01119' => 'egr', 'Eucgr.E04043' => 'egr', 'Eucgr.J00428' => 'egr', 'Eucgr.J00958' => 'egr', 'FAN11G3091' => 'fan', 'FAN11G3651' => 'fan', 'FAN16G2566' => 'fan', 'FAN21G3155' => 'fan', 'FAN21G3400' => 'fan', 'FAN21G3543' => 'fan', 'FAN25G0234' => 'fan', 'FAN25G1422' => 'fan', 'FAN25G3392' => 'fan', 'FvH4_3g01940' => 'fve', 'FvH4_3g29870' => 'fve', 'FvH4_3g33680' => 'fve', 'Glyma.09G004200' => 'gma', 'Glyma.11G151288' => 'gma', 'Glyma.11G189100' => 'gma', 'Glyma.12G072500' => 'gma', 'Glyma.12G085500' => 'gma', 'Glyma.12G181800' => 'gma', 'Glyma.12G193000' => 'gma', 'Glyma.13G309300' => 'gma', 'Glyma.13G319000' => 'gma', 'Glyma.17G012600' => 'gma', 'Gohir.A06G148600' => 'ghi', 'Gohir.A07G115800' => 'ghi', 'Gohir.A08G003600' => 'ghi', 'Gohir.A09G093300' => 'ghi', 'Gohir.A09G105400' => 'ghi', 'Gohir.A09G105500' => 'ghi', 'Gohir.D06G154600' => 'ghi', 'Gohir.D07G120200' => 'ghi', 'Gohir.D08G013900' => 'ghi', 'Gohir.D09G093100' => 'ghi', 'Gohir.D09G102200' => 'ghi', 'Gohir.D09G102300' => 'ghi', 'Gorai.001G129400' => 'gra', 'Gorai.004G008200' => 'gra', 'Gorai.006G109800' => 'gra', 'Gorai.006G119500' => 'gra', 'Gorai.006G121300' => 'gra', 'Gorai.010G180700' => 'gra', 'GSVIVG01012716001' => 'vvi', 'GSVIVG01025118001' => 'vvi', 'GSVIVG01030439001' => 'vvi', 'GSVIVG01031397001' => 'vvi', 'HanXRQChr01g0004201' => 'han', 'HanXRQChr02g0054941' => 'han', 'HanXRQChr05g0141811' => 'han', 'HanXRQChr07g0197751' => 'han', 'HanXRQChr11g0346691' => 'han', 'HanXRQChr13g0396971' => 'han', 'HanXRQChr14g0432951' => 'han', 'HanXRQChr14g0452001' => 'han', 'HanXRQChr15g0496681' => 'han', 'HanXRQChr17g0557491' => 'han', 'HanXRQChr17g0557501' => 'han', 'Haze_06809' => 'cav', 'Haze_12852' => 'cav', 'Haze_15850' => 'cav', 'Haze_23446' => 'cav', 'Haze_23942' => 'cav', 'Haze_23943' => 'cav', 'Hma1.2p1_0091F.1_g046450' => 'hma', 'Hma1.2p1_0128F.1_g059910' => 'hma', 'Hma1.2p1_0249F.1_g102260' => 'hma', 'Hma1.2p1_0453F.1_g156190' => 'hma', 'Hma1.2p1_0695F.1_g204380' => 'hma', 'Hma1.2p1_0749F.1_g212650' => 'hma', 'Hma1.2p1_2156F.1_g315420' => 'hma', 'Hma1.2p1_2686F.1_g326940' => 'hma', 'HPP92_006428' => 'vpl', 'HPP92_012069' => 'vpl', 'HPP92_014129' => 'vpl', 'HPP92_014133' => 'vpl', 'HPP92_017315' => 'vpl', 'HPP92_026445' => 'vpl', 'HPP92_026446' => 'vpl', 'Hund00774' => 'sun', 'Hund07682' => 'sun', 'Hund21413' => 'sun', 'Hund23462' => 'sun', 'Hund23463' => 'sun', 'Lalb_Chr03g0027911' => 'lal', 'Lalb_Chr13g0304271' => 'lal', 'Lalb_Chr19g0137471' => 'lal', 'Lalb_Chr22g0350651' => 'lal', 'Lalb_Chr24g0395151' => 'lal', 'Lj1A1231T40' => 'lonja', 'Lj1A221T48' => 'lonja', 'Lj1C924T12' => 'lonja', 'Lj2C993G6' => 'lonja', 'Lj3g0005790' => 'lja', 'Lj3g0015432' => 'lja', 'Lj3g0017722' => 'lja', 'Lj3g0018497' => 'lja', 'Lj4g0025071' => 'lja', 'Lsat_1_v5_gn_1_129680' => 'lsa', 'Lsat_1_v5_gn_2_25321' => 'lsa', 'Lsat_1_v5_gn_2_95461' => 'lsa', 'Lsat_1_v5_gn_4_159620' => 'lsa', 'Lsat_1_v5_gn_6_41301' => 'lsa', 'Lsat_1_v5_gn_6_74660' => 'lsa', 'Lsat_1_v5_gn_7_11520' => 'lsa', 'Lsat_1_v5_gn_9_67680' => 'lsa', 'Manes.04G008300' => 'mes', 'Manes.04G008400' => 'mes', 'Manes.04G026500' => 'mes', 'Manes.10G135300' => 'mes', 'Manes.11G157300' => 'mes', 'Manes.12G074000' => 'mes', 'Manes.16G006200' => 'mes', 'Manes.17G026400' => 'mes', 'Mapoly0024s0086' => 'mpo', 'Mapoly0024s0087' => 'mpo', 'Mapoly0071s0057' => 'mpo', 'Mapoly0204s0012' => 'mpo', 'MBI04_g37681_MAGBIO' => 'mbi', 'MBI05_g17779_MAGBIO' => 'mbi', 'MBI12_g31184_MAGBIO' => 'mbi', 'MBI17_g11083_MAGBIO' => 'mbi', 'MBI18_g03883_MAGBIO' => 'mbi', 'MBI18_g28940_MAGBIO' => 'mbi', 'MCO01G690' => 'mco', 'MD03G1109900' => 'mdo', 'MD03G1134800' => 'mdo', 'MD05G1348000' => 'mdo', 'MD10G1322400' => 'mdo', 'MD11G1123300' => 'mdo', 'MD11G1157600' => 'mdo', 'Medtr2g084875' => 'mtr', 'Medtr2g088130' => 'mtr', 'Medtr4g055310' => 'mtr', 'Medtr4g061070' => 'mtr', 'Medtr4g132250' => 'mtr', 'MELO3C004795.2' => 'cme', 'MELO3C004797.2' => 'cme', 'MELO3C007396.2' => 'cme', 'MELO3C019277.2' => 'cme', 'MELO3C021449.2' => 'cme', 'MELO3C025736.2' => 'cme', 'Migut.D02175' => 'egut', 'Migut.H01573' => 'egut', 'Migut.M01327' => 'egut', 'Migut.N02513' => 'egut', 'MSTRG.14638' => 'ama', 'MSTRG.18632' => 'ama', 'MSTRG.7203' => 'ama', 'Nitab4.5_0000533g0140' => 'nta', 'Nitab4.5_0000888g0150' => 'nta', 'Nitab4.5_0001453g0040' => 'nta', 'Nitab4.5_0002827g0090' => 'nta', 'Nitab4.5_0003082g0040' => 'nta', 'Nitab4.5_0007799g0040' => 'nta', 'Nitab4.5_0008983g0010' => 'nta', 'Nitab4.5_0009017g0020' => 'nta', 'Nn1g02132' => 'nnu', 'Nn1g03492' => 'nnu', 'Nn1g03493' => 'nnu', 'Nn1g03494' => 'nnu', 'Nn1g07164' => 'nnu', 'Nn1g07291' => 'nnu', 'Nn2g10655' => 'nnu', 'Nn2g11652' => 'nnu', 'Nn2g14008' => 'nnu', 'Nn3g17476' => 'nnu', 'Nn3g17477' => 'nnu', 'Nn4g22370' => 'nnu', 'Nn4g25255' => 'nnu', 'Nn5g27755' => 'nnu', 'Nn6g34260' => 'nnu', 'Nn6g35041' => 'nnu', 'Oeu005924.1' => 'oeu', 'Oeu008383.1' => 'oeu', 'Oeu014928.1' => 'oeu', 'Oeu019889.1' => 'oeu', 'Oeu022271.1' => 'oeu', 'Oeu025271.1' => 'oeu', 'Oeu036302.1' => 'oeu', 'Oeu044100.1' => 'oeu', 'Os01g0528300' => 'osa', 'Os03g0286200' => 'osa', 'Os04g0406600' => 'osa', 'Os07g0512000' => 'osa', 'Os07g0694600' => 'osa', 'Os08g0411000' => 'osa', 'Os09g0565700' => 'osa', 'Os09g0566050' => 'osa', 'Os10g0523700' => 'osa', 'Peaxi162Scf00002g00514' => 'pax', 'Peaxi162Scf00047g01817' => 'pax', 'Peaxi162Scf00114g00001' => 'pax', 'Peaxi162Scf00147g00613' => 'pax', 'Peaxi162Scf00389g00425' => 'pax', 'PGR042G1139' => 'pgr', 'PGR042G3273' => 'pgr', 'PGR102G2180' => 'pgr', 'PGR119G0234' => 'pgr', 'PGR119G0668' => 'pgr', 'PGSC0003DMG400007122' => 'stu', 'PGSC0003DMG400016478' => 'stu', 'PGSC0003DMG400025374' => 'stu', 'PGSC0003DMG400026536' => 'stu', 'Phvul.003G079600' => 'pvu', 'Phvul.005G115600' => 'pvu', 'Phvul.005G127100' => 'pvu', 'Phvul.006G149500' => 'pvu', 'Phvul.006G149600' => 'pvu', 'Phvul.011G071800' => 'pvu', 'Phvul.011G090400' => 'pvu', 'Potri.004G013400' => 'ptr', 'Potri.004G188100' => 'ptr', 'Potri.008G195500' => 'ptr', 'Potri.009G148800' => 'ptr', 'Potri.011G004700' => 'ptr', 'Pp3c17_22810' => 'ppa', 'Pp3c18_4480' => 'ppa', 'Pp3c19_13030' => 'ppa', 'Pp3c1_33620' => 'ppa', 'Pp3c2_9380' => 'ppa', 'PRCOL_00001023' => 'pco', 'Prupe.3G216300' => 'ppe', 'Prupe.4G019500' => 'ppe', 'Prupe.6G092500' => 'ppe', 'Prupe.6G119200' => 'ppe', 'Psat0s1945g0080' => 'psa', 'Psat0s4167g0040' => 'psa', 'Psat1g185800' => 'psa', 'Psat4g006440' => 'psa', 'Psat4g006480' => 'psa', 'Psat4g168120' => 'psa', 'Psat5g255680' => 'psa', 'Psat5g261760' => 'psa', 'Psat7g222120' => 'psa', 'PSO063G7252' => 'pso', 'PSO170G4778' => 'pso', 'PSO210G2249' => 'pso', 'PSO339G2411' => 'pso', 'PSO339G2457' => 'pso', 'PSO339G2854' => 'pso', 'PSO339G4288' => 'pso', 'PSO339G4615' => 'pso', 'PSO384G2796' => 'pso', 'PSO384G2940' => 'pso', 'PSO384G4227' => 'pso', 'PSO478G1425' => 'pso', 'PSO541G3863' => 'pso', 'PSO675G0507' => 'pso', 'PSO782G0338' => 'pso', 'PSO832G0644' => 'pso', 'QL01p013664' => 'qlo', 'QL01p036598' => 'qlo', 'QL05p072984' => 'qlo', 'QL08p005768' => 'qlo', 'QL08p032743' => 'qlo', 'QL93p0073_0439' => 'qlo', 'QL93p0073_0444' => 'qlo', 'RcHm_v2.0_Chr5g0002851' => 'rch', 'RcHm_v2.0_Chr5g0055201' => 'rch', 'RcHm_v2.0_Chr5g0061191' => 'rch', 'RcHm_v2.0_Chr7g0203231' => 'rch', 'Rhsim01G0208100' => 'rsi', 'Rhsim01G0208200' => 'rsi', 'Rhsim02G0106500' => 'rsi', 'Rhsim03G0107900' => 'rsi', 'Rhsim06G0163400' => 'rsi', 'Rhsim13G0105200' => 'rsi', 'Sabra04G0006300' => 'sbr', 'Sabra04G0127000' => 'sbr', 'Sabra08G0148700' => 'sbr', 'Sabra09G0117400' => 'sbr', 'SalBow1G3326' => 'sbo', 'SalBow3G3228' => 'sbo', 'SalBow6G1634' => 'sbo', 'SalBow6G3603' => 'sbo', 'SalBow6G5266' => 'sbo', 'SalBow7G2265' => 'sbo', 'SalBow8G0850' => 'sbo', 'SalBow8G2592' => 'sbo', 'Sc05g0009240' => 'sci', 'Sc12g0002300' => 'sci', 'Sc21g0000100' => 'sci', 'Sc21g0004720' => 'sci', 'Sed0002949' => 'sed', 'Sed0004114' => 'sed', 'Sed0004306' => 'sed', 'Sed0006172' => 'sed', 'Sed0008413' => 'sed', 'Sed0013809' => 'sed', 'Sed0019556' => 'sed', 'SEGI_03570' => 'sgi', 'SEGI_07859' => 'sgi', 'SEGI_15042' => 'sgi', 'SEGI_16263' => 'sgi', 'SEGI_16552' => 'sgi', 'SEGI_24331' => 'sgi', 'SEGI_27316' => 'sgi', 'SEGI_29521' => 'sgi', 'SEGI_41342' => 'sgi', 'SGA_v2.0_scaffold27G11617' => 'sas', 'SGA_v2.0_scaffold316G48428' => 'sas', 'SGA_v2.0_scaffold49G18261' => 'sas', 'SGA_v2.0_scaffold7G03831' => 'sas', 'SGA_v2.0_scaffold93G28359' => 'sas', 'SHI02210' => 'shi', 'SHI06028' => 'shi', 'SHI06321' => 'shi', 'SMO111G0012' => 'smo', 'SMO228G0080' => 'smo', 'SMO356G0756' => 'smo', 'Solyc02g080620.3' => 'sly', 'Solyc06g074530.1' => 'sly', 'Solyc11g066890.1' => 'sly', 'Solyc11g072520.3' => 'sly', 'Sopen02g025330' => 'spe', 'Sopen06g031000' => 'spe', 'Sopen09g008240' => 'spe', 'Sopen09g025210' => 'spe', 'Sopen11g026600' => 'spe', 'Sopen11g030170' => 'spe', 'Sp1g10420' => 'spa', 'Sp3g06570' => 'spa', 'Sp4g10660' => 'spa', 'Sp5g16460' => 'spa', 'Sp6g22710' => 'spa', 'TAR365G0112' => 'tar', 'TAR369G0717' => 'tar', 'TAR374G0976' => 'tar', 'TAR623G1128' => 'tar', 'TAR626G1937' => 'tar', 'TAR627G0123' => 'tar', 'TAR628G0305' => 'tar', 'TAR636G1176' => 'tar', 'TAR636G2442' => 'tar', 'THA.LOC104800556' => 'tha', 'THA.LOC104809501' => 'tha', 'THA.LOC104815126' => 'tha', 'THA.LOC104815732' => 'tha', 'THA.LOC104823528' => 'tha', 'Thecc.02G365600' => 'tca', 'Thecc.06G222300' => 'tca', 'Thecc.09G261800' => 'tca', 'Thecc.09G291400' => 'tca', 'Thhalv10003028m.g' => 'esa', 'Thhalv10007886m.g' => 'esa', 'Thhalv10016085m.g' => 'esa', 'Thhalv10016681m.g' => 'esa', 'Thhalv10020951m.g' => 'esa', 'TPR.G15598' => 'tpr', 'TPR.G29305' => 'tpr', 'TPR.G32395' => 'tpr', 'TPR.G36998' => 'tpr', 'TPR.G4227' => 'tpr', 'TWI18G1433' => 'twi', 'TWI31G0755' => 'twi', 'TWI38G0912' => 'twi', 'TWI75G1097' => 'twi', 'TWI75G1619' => 'twi', 'TWI79G1336' => 'twi', 'unitig_0.g943' => 'ugi', 'unitig_0.g944' => 'ugi', 'unitig_22.g6646' => 'ugi', 'unitig_37.g12681' => 'ugi', 'unitig_8.g3290' => 'ugi', 'vmacro03278' => 'vma', 'vmacro12197' => 'vma', 'vmacro14478' => 'vma', 'vmacro15787' => 'vma', 'vmacro15789' => 'vma', 'vmacro15790' => 'vma', 'vmacro15806' => 'vma', 'vmacro22907' => 'vma', 'vmacro22908' => 'vma', 'vmacro22909' => 'vma', 'vmacro23108' => 'vma', 'VMungo0540G0540' => 'vmu', 'VMungo0540G2468' => 'vmu', 'VMungo1080G0390' => 'vmu', 'VMungo1080G1165' => 'vmu', 'VMungo1127G0170' => 'vmu', 'VMungo1127G2099' => 'vmu', 'VMungo1215G3013' => 'vmu', 'Zm00001eb013110' => 'zma', 'Zm00001eb084260' => 'zma', 'Zm00001eb096110' => 'zma', 'Zm00001eb217510' => 'zma', 'Zm00001eb322550' => 'zma', 'Zm00001eb390770' => 'zma', 'Zm00001eb397170' => 'zma', 'Zm00001eb404610' => 'zma', 'Zm00001eb421790' => 'zma' ), 'gf_id' => 'HOM05D000911', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000911' ), 'data_identifier' => 'HOM05D000911', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000911', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27780' => 'bna', 'A03p35380' => 'bna', 'A04p21160' => 'bna', 'A05p40570' => 'bna', 'A06p26900' => 'bna', 'A08p33230' => 'bna', 'A09p65960' => 'bna', 'A10p18290' => 'bna', 'Aa31LG1G12990' => 'aar', 'Aa31LG1G2980' => 'aar', 'Aa31LG4G14320' => 'aar', 'Aa31LG7G11800' => 'aar', 'Aa31sc36G50' => 'aar', 'Aa31sc36G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3721' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5459' => 'aag', 'Actinidia03028' => 'ach', 'Actinidia03753' => 'ach', 'Actinidia04187' => 'ach', 'Actinidia05509' => 'ach', 'Actinidia24180' => 'ach', 'Actinidia26906' => 'ach', 'Actinidia37097' => 'ach', 'Actinidia38249' => 'ach', 'Ah.01g003470' => 'amhyb', 'Ah.01g004580' => 'amhyb', 'Ah.01g014850' => 'amhyb', 'Ah.01g016830' => 'amhyb', 'Ah.14g088000' => 'amhyb', 'AL1G22980' => 'aly', 'AL3G18990' => 'aly', 'AL4G22440' => 'aly', 'AL4G33180' => 'aly', 'AL5G22920' => 'aly', 'AL6G33660' => 'aly', 'AL8G20720' => 'aly', 'Aqoxy1G00935' => 'aox', 'Aqoxy1G02094' => 'aox', 'Aqoxy2G01239' => 'aox', 'Aqoxy4G01870' => 'aox', 'Aqoxy7G00450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.36ZVTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71EM27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5D6C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH3WRE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3NCM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RIM768' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YB5YRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z36GDV' => 'arhy', 'AT1G08250' => 'ath', 'AT1G11790' => 'ath', 'AT2G27820' => 'ath', 'AT3G07630' => 'ath', 'AT3G44720' => 'ath', 'AT5G22630' => 'ath', 'ATR0693G304' => 'atr', 'ATR0794G109' => 'atr', 'ATR0820G120' => 'atr', 'ATR1159G064' => 'atr', 'Atru.chr10.2239' => 'acertr', 'Atru.chr3.3371' => 'acertr', 'Atru.chr6.3202' => 'acertr', 'AUR62006499' => 'cqu', 'AUR62012718' => 'cqu', 'AUR62021938' => 'cqu', 'AUR62023932' => 'cqu', 'AUR62025034' => 'cqu', 'AUR62025035' => 'cqu', 'AUR62038307' => 'cqu', 'AUR62043466' => 'cqu', 'BcaB02g10748' => 'bca', 'BcaB03g13231' => 'bca', 'BcaB03g14689' => 'bca', 'BcaB05g22716' => 'bca', 'BcaB06g28172' => 'bca', 'BcaB08g36413' => 'bca', 'BcaC01g02186' => 'bca', 'BcaC01g04272' => 'bca', 'BcaC02g08080' => 'bca', 'BcaC02g08227' => 'bca', 'BcaC03g13901' => 'bca', 'BcaC04g19593' => 'bca', 'BcaC04g20874' => 'bca', 'BcaC05g29557' => 'bca', 'BcaC06g35505' => 'bca', 'BcaC07g41954' => 'bca', 'BcaC07g41955' => 'bca', 'BcaC07g41956' => 'bca', 'BcaC07g42519' => 'bca', 'BcaC07g42520' => 'bca', 'BcaC07g42523' => 'bca', 'BcaC07g42524' => 'bca', 'BcaC07g42525' => 'bca', 'BcaC08g47480' => 'bca', 'BcaC08g47481' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00530' => 'bna', 'BolC2t07178H' => 'bol', 'BolC3t16567H' => 'bol', 'BolC4t27234H' => 'bol', 'BolC5t29728H' => 'bol', 'BolC5t34622H' => 'bol', 'BolC6t40321H' => 'bol', 'BolC7t42028H' => 'bol', 'BolC8t49125H' => 'bol', 'BolC8t52538H' => 'bol', 'BolC8t52539H' => 'bol', 'BolC9t56681H' => 'bol', 'BolC9t58266H' => 'bol', 'BolSC21t60294H' => 'bol', 'BraA02t05670Z' => 'bra', 'BraA03t12716Z' => 'bra', 'BraA04t17685Z' => 'bra', 'BraA05t22788Z' => 'bra', 'BraA06t24032Z' => 'bra', 'BraA06t25625Z' => 'bra', 'BraA07t27930Z' => 'bra', 'BraA08t35242Z' => 'bra', 'BraA09t38609Z' => 'bra', 'BraA10t43905Z' => 'bra', 'C02p11060' => 'bna', 'C03p42990' => 'bna', 'C03p67310' => 'bna', 'C04p56990' => 'bna', 'C04p58660' => 'bna', 'C05p09890' => 'bna', 'C05p59680' => 'bna', 'C06p19830' => 'bna', 'C06p53040' => 'bna', 'C07p15230' => 'bna', 'C08p50070' => 'bna', 'C08p50090' => 'bna', 'C09p38330' => 'bna', 'C09p53940' => 'bna', 'CAN.G1014.1' => 'can', 'CAN.G644.30' => 'can', 'CAN.G84.47' => 'can', 'CAN.G919.8' => 'can', 'CANSAT54G0113' => 'cansat', 'CANSAT54G1286' => 'cansat', 'CANSAT64G1020' => 'cansat', 'CARHR008080' => 'chi', 'CARHR008090' => 'chi', 'CARHR012130' => 'chi', 'CARHR038390' => 'chi', 'CARHR082330' => 'chi', 'CARHR120520' => 'chi', 'CARHR151470' => 'chi', 'CARHR190950' => 'chi', 'Carub.0001s0760' => 'cru', 'Carub.0001s1146' => 'cru', 'Carub.0003s0721' => 'cru', 'Carub.0004s0858' => 'cru', 'Carub.0005s1040' => 'cru', 'Carub.0006s2035' => 'cru', 'Carub.0015s0005' => 'cru', 'Ca_01607_v3' => 'car', 'Ca_01677_v3' => 'car', 'Ca_06087_v3' => 'car', 'Ca_19238_v3' => 'car', 'Ca_19373_v3' => 'car', 'Ca_21079_v3' => 'car', 'CBR_g54016' => 'cbr', 'CBR_g54018' => 'cbr', 'CBR_g54020' => 'cbr', 'Cc01_g09780' => 'ccan', 'Cc01_g11680' => 'ccan', 'Cc02_g15610' => 'ccan', 'Cc05_g04350' => 'ccan', 'Cc09_g01580' => 'ccan', 'CDE01G0795' => 'cde', 'CDE02G2024' => 'cde', 'CDE02G2260' => 'cde', 'CDE02G4561' => 'cde', 'CDE05G2733' => 'cde', 'CDE05G3422' => 'cde', 'CDE06G2003' => 'cde', 'CDE08G0576' => 'cde', 'CDE09G0048' => 'cde', 'CDE11G0805' => 'cde', 'Cfa003644' => 'cfa', 'Cfa006290' => 'cfa', 'Cfa010080' => 'cfa', 'Cfa011376' => 'cfa', 'Cfa011576' => 'cfa', 'Cfa011577' => 'cfa', 'Cfa014389' => 'cfa', 'Ciclev10006044m.g' => 'ccl', 'Ciclev10006954m.g' => 'ccl', 'Ciclev10015131m.g' => 'ccl', 'Ciclev10015580m.g' => 'ccl', 'Ciclev10028359m.g' => 'ccl', 'Ciclev10028573m.g' => 'ccl', 'CiPaw.03G159300' => 'cil', 'CiPaw.04G115100' => 'cil', 'CiPaw.09G092800' => 'cil', 'CiPaw.10G071800' => 'cil', 'CiPaw.13G105800' => 'cil', 'CiPaw.13G141000' => 'cil', 'CiPaw.14G103400' => 'cil', 'ClCG01G012700' => 'cla', 'ClCG01G012720' => 'cla', 'ClCG01G021920' => 'cla', 'ClCG02G008870' => 'cla', 'ClCG02G020840' => 'cla', 'ClCG02G021930' => 'cla', 'COL.COLO4_19302' => 'col', 'COL.COLO4_25262' => 'col', 'COL.COLO4_31788' => 'col', 'Cpa.g.c34684' => 'cpa', 'Cpa.g.c36520.1' => 'cpa', 'Cpa.g.c45626' => 'cpa', 'Cpa.g.sc121.17' => 'cpa', 'Cpa.g.sc13.22' => 'cpa', 'Cpa.g.sc87.88' => 'cpa', 'Cre06.g261800' => 'cre', 'CsaV3_1G014500' => 'csa', 'CsaV3_1G014510' => 'csa', 'CsaV3_2G034880' => 'csa', 'CsaV3_6G014760' => 'csa', 'CsaV3_6G021500' => 'csa', 'CsaV3_6G048980' => 'csa', 'CSS0002511' => 'camsi', 'CSS0007556' => 'camsi', 'CSS0008532' => 'camsi', 'CSS0009709' => 'camsi', 'CSS0010486' => 'camsi', 'CSS0016768' => 'camsi', 'CSS0023512' => 'camsi', 'CSS0025341' => 'camsi', 'CSS0027999' => 'camsi', 'CSS0028944' => 'camsi', 'CSS0032292' => 'camsi', 'CSS0032464' => 'camsi', 'CSS0037153' => 'camsi', 'CSS0039256' => 'camsi', 'CSS0048392' => 'camsi', 'CSS0050458' => 'camsi', 'DCAR_004224' => 'dca', 'DCAR_006147' => 'dca', 'DCAR_006465' => 'dca', 'DCAR_008159' => 'dca', 'DCAR_012164' => 'dca', 'DCAR_019764' => 'dca', 'Dinv05418' => 'din', 'Dinv10839' => 'din', 'Dinv12521' => 'din', 'Dinv13900' => 'din', 'Dinv29426' => 'din', 'Duzib150G0263' => 'dzi', 'Duzib168G1178' => 'dzi', 'Duzib168G1924' => 'dzi', 'Duzib170G0299' => 'dzi', 'Duzib170G0813' => 'dzi', 'Duzib235G1128' => 'dzi', 'Duzib248G1060' => 'dzi', 'ECA232G1910' => 'eca', 'ECA233G4621' => 'eca', 'ECA238G1216' => 'eca', 'ECA238G1784' => 'eca', 'ECA248G1242' => 'eca', 'EL10Ac8g20071' => 'bvu', 'EL10Ac9g21086' => 'bvu', 'EL10Ac9g22407' => 'bvu', 'EL10Ac9g22412' => 'bvu', 'Eucgr.A01119' => 'egr', 'Eucgr.E04043' => 'egr', 'Eucgr.J00428' => 'egr', 'Eucgr.J00958' => 'egr', 'FAN11G3091' => 'fan', 'FAN11G3651' => 'fan', 'FAN16G2566' => 'fan', 'FAN21G3155' => 'fan', 'FAN21G3400' => 'fan', 'FAN21G3543' => 'fan', 'FAN25G0234' => 'fan', 'FAN25G1422' => 'fan', 'FAN25G3392' => 'fan', 'FvH4_3g01940' => 'fve', 'FvH4_3g29870' => 'fve', 'FvH4_3g33680' => 'fve', 'Glyma.09G004200' => 'gma', 'Glyma.11G151288' => 'gma', 'Glyma.11G189100' => 'gma', 'Glyma.12G072500' => 'gma', 'Glyma.12G085500' => 'gma', 'Glyma.12G181800' => 'gma', 'Glyma.12G193000' => 'gma', 'Glyma.13G309300' => 'gma', 'Glyma.13G319000' => 'gma', 'Glyma.17G012600' => 'gma', 'Gohir.A06G148600' => 'ghi', 'Gohir.A07G115800' => 'ghi', 'Gohir.A08G003600' => 'ghi', 'Gohir.A09G093300' => 'ghi', 'Gohir.A09G105400' => 'ghi', 'Gohir.A09G105500' => 'ghi', 'Gohir.D06G154600' => 'ghi', 'Gohir.D07G120200' => 'ghi', 'Gohir.D08G013900' => 'ghi', 'Gohir.D09G093100' => 'ghi', 'Gohir.D09G102200' => 'ghi', 'Gohir.D09G102300' => 'ghi', 'Gorai.001G129400' => 'gra', 'Gorai.004G008200' => 'gra', 'Gorai.006G109800' => 'gra', 'Gorai.006G119500' => 'gra', 'Gorai.006G121300' => 'gra', 'Gorai.010G180700' => 'gra', 'GSVIVG01012716001' => 'vvi', 'GSVIVG01025118001' => 'vvi', 'GSVIVG01030439001' => 'vvi', 'GSVIVG01031397001' => 'vvi', 'HanXRQChr01g0004201' => 'han', 'HanXRQChr02g0054941' => 'han', 'HanXRQChr05g0141811' => 'han', 'HanXRQChr07g0197751' => 'han', 'HanXRQChr11g0346691' => 'han', 'HanXRQChr13g0396971' => 'han', 'HanXRQChr14g0432951' => 'han', 'HanXRQChr14g0452001' => 'han', 'HanXRQChr15g0496681' => 'han', 'HanXRQChr17g0557491' => 'han', 'HanXRQChr17g0557501' => 'han', 'Haze_06809' => 'cav', 'Haze_12852' => 'cav', 'Haze_15850' => 'cav', 'Haze_23446' => 'cav', 'Haze_23942' => 'cav', 'Haze_23943' => 'cav', 'Hma1.2p1_0091F.1_g046450' => 'hma', 'Hma1.2p1_0128F.1_g059910' => 'hma', 'Hma1.2p1_0249F.1_g102260' => 'hma', 'Hma1.2p1_0453F.1_g156190' => 'hma', 'Hma1.2p1_0695F.1_g204380' => 'hma', 'Hma1.2p1_0749F.1_g212650' => 'hma', 'Hma1.2p1_2156F.1_g315420' => 'hma', 'Hma1.2p1_2686F.1_g326940' => 'hma', 'HPP92_006428' => 'vpl', 'HPP92_012069' => 'vpl', 'HPP92_014129' => 'vpl', 'HPP92_014133' => 'vpl', 'HPP92_017315' => 'vpl', 'HPP92_026445' => 'vpl', 'HPP92_026446' => 'vpl', 'Hund00774' => 'sun', 'Hund07682' => 'sun', 'Hund21413' => 'sun', 'Hund23462' => 'sun', 'Hund23463' => 'sun', 'Lalb_Chr03g0027911' => 'lal', 'Lalb_Chr13g0304271' => 'lal', 'Lalb_Chr19g0137471' => 'lal', 'Lalb_Chr22g0350651' => 'lal', 'Lalb_Chr24g0395151' => 'lal', 'Lj1A1231T40' => 'lonja', 'Lj1A221T48' => 'lonja', 'Lj1C924T12' => 'lonja', 'Lj2C993G6' => 'lonja', 'Lj3g0005790' => 'lja', 'Lj3g0015432' => 'lja', 'Lj3g0017722' => 'lja', 'Lj3g0018497' => 'lja', 'Lj4g0025071' => 'lja', 'Lsat_1_v5_gn_1_129680' => 'lsa', 'Lsat_1_v5_gn_2_25321' => 'lsa', 'Lsat_1_v5_gn_2_95461' => 'lsa', 'Lsat_1_v5_gn_4_159620' => 'lsa', 'Lsat_1_v5_gn_6_41301' => 'lsa', 'Lsat_1_v5_gn_6_74660' => 'lsa', 'Lsat_1_v5_gn_7_11520' => 'lsa', 'Lsat_1_v5_gn_9_67680' => 'lsa', 'Manes.04G008300' => 'mes', 'Manes.04G008400' => 'mes', 'Manes.04G026500' => 'mes', 'Manes.10G135300' => 'mes', 'Manes.11G157300' => 'mes', 'Manes.12G074000' => 'mes', 'Manes.16G006200' => 'mes', 'Manes.17G026400' => 'mes', 'Mapoly0024s0086' => 'mpo', 'Mapoly0024s0087' => 'mpo', 'Mapoly0071s0057' => 'mpo', 'Mapoly0204s0012' => 'mpo', 'MBI04_g37681_MAGBIO' => 'mbi', 'MBI05_g17779_MAGBIO' => 'mbi', 'MBI12_g31184_MAGBIO' => 'mbi', 'MBI17_g11083_MAGBIO' => 'mbi', 'MBI18_g03883_MAGBIO' => 'mbi', 'MBI18_g28940_MAGBIO' => 'mbi', 'MCO01G690' => 'mco', 'MD03G1109900' => 'mdo', 'MD03G1134800' => 'mdo', 'MD05G1348000' => 'mdo', 'MD10G1322400' => 'mdo', 'MD11G1123300' => 'mdo', 'MD11G1157600' => 'mdo', 'Medtr2g084875' => 'mtr', 'Medtr2g088130' => 'mtr', 'Medtr4g055310' => 'mtr', 'Medtr4g061070' => 'mtr', 'Medtr4g132250' => 'mtr', 'MELO3C004795.2' => 'cme', 'MELO3C004797.2' => 'cme', 'MELO3C007396.2' => 'cme', 'MELO3C019277.2' => 'cme', 'MELO3C021449.2' => 'cme', 'MELO3C025736.2' => 'cme', 'Migut.D02175' => 'egut', 'Migut.H01573' => 'egut', 'Migut.M01327' => 'egut', 'Migut.N02513' => 'egut', 'MSTRG.14638' => 'ama', 'MSTRG.18632' => 'ama', 'MSTRG.7203' => 'ama', 'Nitab4.5_0000533g0140' => 'nta', 'Nitab4.5_0000888g0150' => 'nta', 'Nitab4.5_0001453g0040' => 'nta', 'Nitab4.5_0002827g0090' => 'nta', 'Nitab4.5_0003082g0040' => 'nta', 'Nitab4.5_0007799g0040' => 'nta', 'Nitab4.5_0008983g0010' => 'nta', 'Nitab4.5_0009017g0020' => 'nta', 'Nn1g02132' => 'nnu', 'Nn1g03492' => 'nnu', 'Nn1g03493' => 'nnu', 'Nn1g03494' => 'nnu', 'Nn1g07164' => 'nnu', 'Nn1g07291' => 'nnu', 'Nn2g10655' => 'nnu', 'Nn2g11652' => 'nnu', 'Nn2g14008' => 'nnu', 'Nn3g17476' => 'nnu', 'Nn3g17477' => 'nnu', 'Nn4g22370' => 'nnu', 'Nn4g25255' => 'nnu', 'Nn5g27755' => 'nnu', 'Nn6g34260' => 'nnu', 'Nn6g35041' => 'nnu', 'Oeu005924.1' => 'oeu', 'Oeu008383.1' => 'oeu', 'Oeu014928.1' => 'oeu', 'Oeu019889.1' => 'oeu', 'Oeu022271.1' => 'oeu', 'Oeu025271.1' => 'oeu', 'Oeu036302.1' => 'oeu', 'Oeu044100.1' => 'oeu', 'Os01g0528300' => 'osa', 'Os03g0286200' => 'osa', 'Os04g0406600' => 'osa', 'Os07g0512000' => 'osa', 'Os07g0694600' => 'osa', 'Os08g0411000' => 'osa', 'Os09g0565700' => 'osa', 'Os09g0566050' => 'osa', 'Os10g0523700' => 'osa', 'Peaxi162Scf00002g00514' => 'pax', 'Peaxi162Scf00047g01817' => 'pax', 'Peaxi162Scf00114g00001' => 'pax', 'Peaxi162Scf00147g00613' => 'pax', 'Peaxi162Scf00389g00425' => 'pax', 'PGR042G1139' => 'pgr', 'PGR042G3273' => 'pgr', 'PGR102G2180' => 'pgr', 'PGR119G0234' => 'pgr', 'PGR119G0668' => 'pgr', 'PGSC0003DMG400007122' => 'stu', 'PGSC0003DMG400016478' => 'stu', 'PGSC0003DMG400025374' => 'stu', 'PGSC0003DMG400026536' => 'stu', 'Phvul.003G079600' => 'pvu', 'Phvul.005G115600' => 'pvu', 'Phvul.005G127100' => 'pvu', 'Phvul.006G149500' => 'pvu', 'Phvul.006G149600' => 'pvu', 'Phvul.011G071800' => 'pvu', 'Phvul.011G090400' => 'pvu', 'Potri.004G013400' => 'ptr', 'Potri.004G188100' => 'ptr', 'Potri.008G195500' => 'ptr', 'Potri.009G148800' => 'ptr', 'Potri.011G004700' => 'ptr', 'Pp3c17_22810' => 'ppa', 'Pp3c18_4480' => 'ppa', 'Pp3c19_13030' => 'ppa', 'Pp3c1_33620' => 'ppa', 'Pp3c2_9380' => 'ppa', 'PRCOL_00001023' => 'pco', 'Prupe.3G216300' => 'ppe', 'Prupe.4G019500' => 'ppe', 'Prupe.6G092500' => 'ppe', 'Prupe.6G119200' => 'ppe', 'Psat0s1945g0080' => 'psa', 'Psat0s4167g0040' => 'psa', 'Psat1g185800' => 'psa', 'Psat4g006440' => 'psa', 'Psat4g006480' => 'psa', 'Psat4g168120' => 'psa', 'Psat5g255680' => 'psa', 'Psat5g261760' => 'psa', 'Psat7g222120' => 'psa', 'PSO063G7252' => 'pso', 'PSO170G4778' => 'pso', 'PSO210G2249' => 'pso', 'PSO339G2411' => 'pso', 'PSO339G2457' => 'pso', 'PSO339G2854' => 'pso', 'PSO339G4288' => 'pso', 'PSO339G4615' => 'pso', 'PSO384G2796' => 'pso', 'PSO384G2940' => 'pso', 'PSO384G4227' => 'pso', 'PSO478G1425' => 'pso', 'PSO541G3863' => 'pso', 'PSO675G0507' => 'pso', 'PSO782G0338' => 'pso', 'PSO832G0644' => 'pso', 'QL01p013664' => 'qlo', 'QL01p036598' => 'qlo', 'QL05p072984' => 'qlo', 'QL08p005768' => 'qlo', 'QL08p032743' => 'qlo', 'QL93p0073_0439' => 'qlo', 'QL93p0073_0444' => 'qlo', 'RcHm_v2.0_Chr5g0002851' => 'rch', 'RcHm_v2.0_Chr5g0055201' => 'rch', 'RcHm_v2.0_Chr5g0061191' => 'rch', 'RcHm_v2.0_Chr7g0203231' => 'rch', 'Rhsim01G0208100' => 'rsi', 'Rhsim01G0208200' => 'rsi', 'Rhsim02G0106500' => 'rsi', 'Rhsim03G0107900' => 'rsi', 'Rhsim06G0163400' => 'rsi', 'Rhsim13G0105200' => 'rsi', 'Sabra04G0006300' => 'sbr', 'Sabra04G0127000' => 'sbr', 'Sabra08G0148700' => 'sbr', 'Sabra09G0117400' => 'sbr', 'SalBow1G3326' => 'sbo', 'SalBow3G3228' => 'sbo', 'SalBow6G1634' => 'sbo', 'SalBow6G3603' => 'sbo', 'SalBow6G5266' => 'sbo', 'SalBow7G2265' => 'sbo', 'SalBow8G0850' => 'sbo', 'SalBow8G2592' => 'sbo', 'Sc05g0009240' => 'sci', 'Sc12g0002300' => 'sci', 'Sc21g0000100' => 'sci', 'Sc21g0004720' => 'sci', 'Sed0002949' => 'sed', 'Sed0004114' => 'sed', 'Sed0004306' => 'sed', 'Sed0006172' => 'sed', 'Sed0008413' => 'sed', 'Sed0013809' => 'sed', 'Sed0019556' => 'sed', 'SEGI_03570' => 'sgi', 'SEGI_07859' => 'sgi', 'SEGI_15042' => 'sgi', 'SEGI_16263' => 'sgi', 'SEGI_16552' => 'sgi', 'SEGI_24331' => 'sgi', 'SEGI_27316' => 'sgi', 'SEGI_29521' => 'sgi', 'SEGI_41342' => 'sgi', 'SGA_v2.0_scaffold27G11617' => 'sas', 'SGA_v2.0_scaffold316G48428' => 'sas', 'SGA_v2.0_scaffold49G18261' => 'sas', 'SGA_v2.0_scaffold7G03831' => 'sas', 'SGA_v2.0_scaffold93G28359' => 'sas', 'SHI02210' => 'shi', 'SHI06028' => 'shi', 'SHI06321' => 'shi', 'SMO111G0012' => 'smo', 'SMO228G0080' => 'smo', 'SMO356G0756' => 'smo', 'Solyc02g080620.3' => 'sly', 'Solyc06g074530.1' => 'sly', 'Solyc11g066890.1' => 'sly', 'Solyc11g072520.3' => 'sly', 'Sopen02g025330' => 'spe', 'Sopen06g031000' => 'spe', 'Sopen09g008240' => 'spe', 'Sopen09g025210' => 'spe', 'Sopen11g026600' => 'spe', 'Sopen11g030170' => 'spe', 'Sp1g10420' => 'spa', 'Sp3g06570' => 'spa', 'Sp4g10660' => 'spa', 'Sp5g16460' => 'spa', 'Sp6g22710' => 'spa', 'TAR365G0112' => 'tar', 'TAR369G0717' => 'tar', 'TAR374G0976' => 'tar', 'TAR623G1128' => 'tar', 'TAR626G1937' => 'tar', 'TAR627G0123' => 'tar', 'TAR628G0305' => 'tar', 'TAR636G1176' => 'tar', 'TAR636G2442' => 'tar', 'THA.LOC104800556' => 'tha', 'THA.LOC104809501' => 'tha', 'THA.LOC104815126' => 'tha', 'THA.LOC104815732' => 'tha', 'THA.LOC104823528' => 'tha', 'Thecc.02G365600' => 'tca', 'Thecc.06G222300' => 'tca', 'Thecc.09G261800' => 'tca', 'Thecc.09G291400' => 'tca', 'Thhalv10003028m.g' => 'esa', 'Thhalv10007886m.g' => 'esa', 'Thhalv10016085m.g' => 'esa', 'Thhalv10016681m.g' => 'esa', 'Thhalv10020951m.g' => 'esa', 'TPR.G15598' => 'tpr', 'TPR.G29305' => 'tpr', 'TPR.G32395' => 'tpr', 'TPR.G36998' => 'tpr', 'TPR.G4227' => 'tpr', 'TWI18G1433' => 'twi', 'TWI31G0755' => 'twi', 'TWI38G0912' => 'twi', 'TWI75G1097' => 'twi', 'TWI75G1619' => 'twi', 'TWI79G1336' => 'twi', 'unitig_0.g943' => 'ugi', 'unitig_0.g944' => 'ugi', 'unitig_22.g6646' => 'ugi', 'unitig_37.g12681' => 'ugi', 'unitig_8.g3290' => 'ugi', 'vmacro03278' => 'vma', 'vmacro12197' => 'vma', 'vmacro14478' => 'vma', 'vmacro15787' => 'vma', 'vmacro15789' => 'vma', 'vmacro15790' => 'vma', 'vmacro15806' => 'vma', 'vmacro22907' => 'vma', 'vmacro22908' => 'vma', 'vmacro22909' => 'vma', 'vmacro23108' => 'vma', 'VMungo0540G0540' => 'vmu', 'VMungo0540G2468' => 'vmu', 'VMungo1080G0390' => 'vmu', 'VMungo1080G1165' => 'vmu', 'VMungo1127G0170' => 'vmu', 'VMungo1127G2099' => 'vmu', 'VMungo1215G3013' => 'vmu', 'Zm00001eb013110' => 'zma', 'Zm00001eb084260' => 'zma', 'Zm00001eb096110' => 'zma', 'Zm00001eb217510' => 'zma', 'Zm00001eb322550' => 'zma', 'Zm00001eb390770' => 'zma', 'Zm00001eb397170' => 'zma', 'Zm00001eb404610' => 'zma', 'Zm00001eb421790' => 'zma' ) $gf_id = 'HOM05D000911' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000911' ) $data_identifier = 'HOM05D000911' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 16, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 5, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 6, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 8, 'nnu' => (int) 16, 'oeu' => (int) 8, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 5, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 16, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421790' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000911', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27780' => 'bna', 'A03p35380' => 'bna', 'A04p21160' => 'bna', 'A05p40570' => 'bna', 'A06p26900' => 'bna', 'A08p33230' => 'bna', 'A09p65960' => 'bna', 'A10p18290' => 'bna', 'Aa31LG1G12990' => 'aar', 'Aa31LG1G2980' => 'aar', 'Aa31LG4G14320' => 'aar', 'Aa31LG7G11800' => 'aar', 'Aa31sc36G50' => 'aar', 'Aa31sc36G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3721' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5459' => 'aag', 'Actinidia03028' => 'ach', 'Actinidia03753' => 'ach', 'Actinidia04187' => 'ach', 'Actinidia05509' => 'ach', 'Actinidia24180' => 'ach', 'Actinidia26906' => 'ach', 'Actinidia37097' => 'ach', 'Actinidia38249' => 'ach', 'Ah.01g003470' => 'amhyb', 'Ah.01g004580' => 'amhyb', 'Ah.01g014850' => 'amhyb', 'Ah.01g016830' => 'amhyb', 'Ah.14g088000' => 'amhyb', 'AL1G22980' => 'aly', 'AL3G18990' => 'aly', 'AL4G22440' => 'aly', 'AL4G33180' => 'aly', 'AL5G22920' => 'aly', 'AL6G33660' => 'aly', 'AL8G20720' => 'aly', 'Aqoxy1G00935' => 'aox', 'Aqoxy1G02094' => 'aox', 'Aqoxy2G01239' => 'aox', 'Aqoxy4G01870' => 'aox', 'Aqoxy7G00450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.36ZVTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71EM27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5D6C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH3WRE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3NCM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RIM768' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YB5YRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z36GDV' => 'arhy', 'AT1G08250' => 'ath', 'AT1G11790' => 'ath', 'AT2G27820' => 'ath', 'AT3G07630' => 'ath', 'AT3G44720' => 'ath', 'AT5G22630' => 'ath', 'ATR0693G304' => 'atr', 'ATR0794G109' => 'atr', 'ATR0820G120' => 'atr', 'ATR1159G064' => 'atr', 'Atru.chr10.2239' => 'acertr', 'Atru.chr3.3371' => 'acertr', 'Atru.chr6.3202' => 'acertr', 'AUR62006499' => 'cqu', 'AUR62012718' => 'cqu', 'AUR62021938' => 'cqu', 'AUR62023932' => 'cqu', 'AUR62025034' => 'cqu', 'AUR62025035' => 'cqu', 'AUR62038307' => 'cqu', 'AUR62043466' => 'cqu', 'BcaB02g10748' => 'bca', 'BcaB03g13231' => 'bca', 'BcaB03g14689' => 'bca', 'BcaB05g22716' => 'bca', 'BcaB06g28172' => 'bca', 'BcaB08g36413' => 'bca', 'BcaC01g02186' => 'bca', 'BcaC01g04272' => 'bca', 'BcaC02g08080' => 'bca', 'BcaC02g08227' => 'bca', 'BcaC03g13901' => 'bca', 'BcaC04g19593' => 'bca', 'BcaC04g20874' => 'bca', 'BcaC05g29557' => 'bca', 'BcaC06g35505' => 'bca', 'BcaC07g41954' => 'bca', 'BcaC07g41955' => 'bca', 'BcaC07g41956' => 'bca', 'BcaC07g42519' => 'bca', 'BcaC07g42520' => 'bca', 'BcaC07g42523' => 'bca', 'BcaC07g42524' => 'bca', 'BcaC07g42525' => 'bca', 'BcaC08g47480' => 'bca', 'BcaC08g47481' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00530' => 'bna', 'BolC2t07178H' => 'bol', 'BolC3t16567H' => 'bol', 'BolC4t27234H' => 'bol', 'BolC5t29728H' => 'bol', 'BolC5t34622H' => 'bol', 'BolC6t40321H' => 'bol', 'BolC7t42028H' => 'bol', 'BolC8t49125H' => 'bol', 'BolC8t52538H' => 'bol', 'BolC8t52539H' => 'bol', 'BolC9t56681H' => 'bol', 'BolC9t58266H' => 'bol', 'BolSC21t60294H' => 'bol', 'BraA02t05670Z' => 'bra', 'BraA03t12716Z' => 'bra', 'BraA04t17685Z' => 'bra', 'BraA05t22788Z' => 'bra', 'BraA06t24032Z' => 'bra', 'BraA06t25625Z' => 'bra', 'BraA07t27930Z' => 'bra', 'BraA08t35242Z' => 'bra', 'BraA09t38609Z' => 'bra', 'BraA10t43905Z' => 'bra', 'C02p11060' => 'bna', 'C03p42990' => 'bna', 'C03p67310' => 'bna', 'C04p56990' => 'bna', 'C04p58660' => 'bna', 'C05p09890' => 'bna', 'C05p59680' => 'bna', 'C06p19830' => 'bna', 'C06p53040' => 'bna', 'C07p15230' => 'bna', 'C08p50070' => 'bna', 'C08p50090' => 'bna', 'C09p38330' => 'bna', 'C09p53940' => 'bna', 'CAN.G1014.1' => 'can', 'CAN.G644.30' => 'can', 'CAN.G84.47' => 'can', 'CAN.G919.8' => 'can', 'CANSAT54G0113' => 'cansat', 'CANSAT54G1286' => 'cansat', 'CANSAT64G1020' => 'cansat', 'CARHR008080' => 'chi', 'CARHR008090' => 'chi', 'CARHR012130' => 'chi', 'CARHR038390' => 'chi', 'CARHR082330' => 'chi', 'CARHR120520' => 'chi', 'CARHR151470' => 'chi', 'CARHR190950' => 'chi', 'Carub.0001s0760' => 'cru', 'Carub.0001s1146' => 'cru', 'Carub.0003s0721' => 'cru', 'Carub.0004s0858' => 'cru', 'Carub.0005s1040' => 'cru', 'Carub.0006s2035' => 'cru', 'Carub.0015s0005' => 'cru', 'Ca_01607_v3' => 'car', 'Ca_01677_v3' => 'car', 'Ca_06087_v3' => 'car', 'Ca_19238_v3' => 'car', 'Ca_19373_v3' => 'car', 'Ca_21079_v3' => 'car', 'CBR_g54016' => 'cbr', 'CBR_g54018' => 'cbr', 'CBR_g54020' => 'cbr', 'Cc01_g09780' => 'ccan', 'Cc01_g11680' => 'ccan', 'Cc02_g15610' => 'ccan', 'Cc05_g04350' => 'ccan', 'Cc09_g01580' => 'ccan', 'CDE01G0795' => 'cde', 'CDE02G2024' => 'cde', 'CDE02G2260' => 'cde', 'CDE02G4561' => 'cde', 'CDE05G2733' => 'cde', 'CDE05G3422' => 'cde', 'CDE06G2003' => 'cde', 'CDE08G0576' => 'cde', 'CDE09G0048' => 'cde', 'CDE11G0805' => 'cde', 'Cfa003644' => 'cfa', 'Cfa006290' => 'cfa', 'Cfa010080' => 'cfa', 'Cfa011376' => 'cfa', 'Cfa011576' => 'cfa', 'Cfa011577' => 'cfa', 'Cfa014389' => 'cfa', 'Ciclev10006044m.g' => 'ccl', 'Ciclev10006954m.g' => 'ccl', 'Ciclev10015131m.g' => 'ccl', 'Ciclev10015580m.g' => 'ccl', 'Ciclev10028359m.g' => 'ccl', 'Ciclev10028573m.g' => 'ccl', 'CiPaw.03G159300' => 'cil', 'CiPaw.04G115100' => 'cil', 'CiPaw.09G092800' => 'cil', 'CiPaw.10G071800' => 'cil', 'CiPaw.13G105800' => 'cil', 'CiPaw.13G141000' => 'cil', 'CiPaw.14G103400' => 'cil', 'ClCG01G012700' => 'cla', 'ClCG01G012720' => 'cla', 'ClCG01G021920' => 'cla', 'ClCG02G008870' => 'cla', 'ClCG02G020840' => 'cla', 'ClCG02G021930' => 'cla', 'COL.COLO4_19302' => 'col', 'COL.COLO4_25262' => 'col', 'COL.COLO4_31788' => 'col', 'Cpa.g.c34684' => 'cpa', 'Cpa.g.c36520.1' => 'cpa', 'Cpa.g.c45626' => 'cpa', 'Cpa.g.sc121.17' => 'cpa', 'Cpa.g.sc13.22' => 'cpa', 'Cpa.g.sc87.88' => 'cpa', 'Cre06.g261800' => 'cre', 'CsaV3_1G014500' => 'csa', 'CsaV3_1G014510' => 'csa', 'CsaV3_2G034880' => 'csa', 'CsaV3_6G014760' => 'csa', 'CsaV3_6G021500' => 'csa', 'CsaV3_6G048980' => 'csa', 'CSS0002511' => 'camsi', 'CSS0007556' => 'camsi', 'CSS0008532' => 'camsi', 'CSS0009709' => 'camsi', 'CSS0010486' => 'camsi', 'CSS0016768' => 'camsi', 'CSS0023512' => 'camsi', 'CSS0025341' => 'camsi', 'CSS0027999' => 'camsi', 'CSS0028944' => 'camsi', 'CSS0032292' => 'camsi', 'CSS0032464' => 'camsi', 'CSS0037153' => 'camsi', 'CSS0039256' => 'camsi', 'CSS0048392' => 'camsi', 'CSS0050458' => 'camsi', 'DCAR_004224' => 'dca', 'DCAR_006147' => 'dca', 'DCAR_006465' => 'dca', 'DCAR_008159' => 'dca', 'DCAR_012164' => 'dca', 'DCAR_019764' => 'dca', 'Dinv05418' => 'din', 'Dinv10839' => 'din', 'Dinv12521' => 'din', 'Dinv13900' => 'din', 'Dinv29426' => 'din', 'Duzib150G0263' => 'dzi', 'Duzib168G1178' => 'dzi', 'Duzib168G1924' => 'dzi', 'Duzib170G0299' => 'dzi', 'Duzib170G0813' => 'dzi', 'Duzib235G1128' => 'dzi', 'Duzib248G1060' => 'dzi', 'ECA232G1910' => 'eca', 'ECA233G4621' => 'eca', 'ECA238G1216' => 'eca', 'ECA238G1784' => 'eca', 'ECA248G1242' => 'eca', 'EL10Ac8g20071' => 'bvu', 'EL10Ac9g21086' => 'bvu', 'EL10Ac9g22407' => 'bvu', 'EL10Ac9g22412' => 'bvu', 'Eucgr.A01119' => 'egr', 'Eucgr.E04043' => 'egr', 'Eucgr.J00428' => 'egr', 'Eucgr.J00958' => 'egr', 'FAN11G3091' => 'fan', 'FAN11G3651' => 'fan', 'FAN16G2566' => 'fan', 'FAN21G3155' => 'fan', 'FAN21G3400' => 'fan', 'FAN21G3543' => 'fan', 'FAN25G0234' => 'fan', 'FAN25G1422' => 'fan', 'FAN25G3392' => 'fan', 'FvH4_3g01940' => 'fve', 'FvH4_3g29870' => 'fve', 'FvH4_3g33680' => 'fve', 'Glyma.09G004200' => 'gma', 'Glyma.11G151288' => 'gma', 'Glyma.11G189100' => 'gma', 'Glyma.12G072500' => 'gma', 'Glyma.12G085500' => 'gma', 'Glyma.12G181800' => 'gma', 'Glyma.12G193000' => 'gma', 'Glyma.13G309300' => 'gma', 'Glyma.13G319000' => 'gma', 'Glyma.17G012600' => 'gma', 'Gohir.A06G148600' => 'ghi', 'Gohir.A07G115800' => 'ghi', 'Gohir.A08G003600' => 'ghi', 'Gohir.A09G093300' => 'ghi', 'Gohir.A09G105400' => 'ghi', 'Gohir.A09G105500' => 'ghi', 'Gohir.D06G154600' => 'ghi', 'Gohir.D07G120200' => 'ghi', 'Gohir.D08G013900' => 'ghi', 'Gohir.D09G093100' => 'ghi', 'Gohir.D09G102200' => 'ghi', 'Gohir.D09G102300' => 'ghi', 'Gorai.001G129400' => 'gra', 'Gorai.004G008200' => 'gra', 'Gorai.006G109800' => 'gra', 'Gorai.006G119500' => 'gra', 'Gorai.006G121300' => 'gra', 'Gorai.010G180700' => 'gra', 'GSVIVG01012716001' => 'vvi', 'GSVIVG01025118001' => 'vvi', 'GSVIVG01030439001' => 'vvi', 'GSVIVG01031397001' => 'vvi', 'HanXRQChr01g0004201' => 'han', 'HanXRQChr02g0054941' => 'han', 'HanXRQChr05g0141811' => 'han', 'HanXRQChr07g0197751' => 'han', 'HanXRQChr11g0346691' => 'han', 'HanXRQChr13g0396971' => 'han', 'HanXRQChr14g0432951' => 'han', 'HanXRQChr14g0452001' => 'han', 'HanXRQChr15g0496681' => 'han', 'HanXRQChr17g0557491' => 'han', 'HanXRQChr17g0557501' => 'han', 'Haze_06809' => 'cav', 'Haze_12852' => 'cav', 'Haze_15850' => 'cav', 'Haze_23446' => 'cav', 'Haze_23942' => 'cav', 'Haze_23943' => 'cav', 'Hma1.2p1_0091F.1_g046450' => 'hma', 'Hma1.2p1_0128F.1_g059910' => 'hma', 'Hma1.2p1_0249F.1_g102260' => 'hma', 'Hma1.2p1_0453F.1_g156190' => 'hma', 'Hma1.2p1_0695F.1_g204380' => 'hma', 'Hma1.2p1_0749F.1_g212650' => 'hma', 'Hma1.2p1_2156F.1_g315420' => 'hma', 'Hma1.2p1_2686F.1_g326940' => 'hma', 'HPP92_006428' => 'vpl', 'HPP92_012069' => 'vpl', 'HPP92_014129' => 'vpl', 'HPP92_014133' => 'vpl', 'HPP92_017315' => 'vpl', 'HPP92_026445' => 'vpl', 'HPP92_026446' => 'vpl', 'Hund00774' => 'sun', 'Hund07682' => 'sun', 'Hund21413' => 'sun', 'Hund23462' => 'sun', 'Hund23463' => 'sun', 'Lalb_Chr03g0027911' => 'lal', 'Lalb_Chr13g0304271' => 'lal', 'Lalb_Chr19g0137471' => 'lal', 'Lalb_Chr22g0350651' => 'lal', 'Lalb_Chr24g0395151' => 'lal', 'Lj1A1231T40' => 'lonja', 'Lj1A221T48' => 'lonja', 'Lj1C924T12' => 'lonja', 'Lj2C993G6' => 'lonja', 'Lj3g0005790' => 'lja', 'Lj3g0015432' => 'lja', 'Lj3g0017722' => 'lja', 'Lj3g0018497' => 'lja', 'Lj4g0025071' => 'lja', 'Lsat_1_v5_gn_1_129680' => 'lsa', 'Lsat_1_v5_gn_2_25321' => 'lsa', 'Lsat_1_v5_gn_2_95461' => 'lsa', 'Lsat_1_v5_gn_4_159620' => 'lsa', 'Lsat_1_v5_gn_6_41301' => 'lsa', 'Lsat_1_v5_gn_6_74660' => 'lsa', 'Lsat_1_v5_gn_7_11520' => 'lsa', 'Lsat_1_v5_gn_9_67680' => 'lsa', 'Manes.04G008300' => 'mes', 'Manes.04G008400' => 'mes', 'Manes.04G026500' => 'mes', 'Manes.10G135300' => 'mes', 'Manes.11G157300' => 'mes', 'Manes.12G074000' => 'mes', 'Manes.16G006200' => 'mes', 'Manes.17G026400' => 'mes', 'Mapoly0024s0086' => 'mpo', 'Mapoly0024s0087' => 'mpo', 'Mapoly0071s0057' => 'mpo', 'Mapoly0204s0012' => 'mpo', 'MBI04_g37681_MAGBIO' => 'mbi', 'MBI05_g17779_MAGBIO' => 'mbi', 'MBI12_g31184_MAGBIO' => 'mbi', 'MBI17_g11083_MAGBIO' => 'mbi', 'MBI18_g03883_MAGBIO' => 'mbi', 'MBI18_g28940_MAGBIO' => 'mbi', 'MCO01G690' => 'mco', 'MD03G1109900' => 'mdo', 'MD03G1134800' => 'mdo', 'MD05G1348000' => 'mdo', 'MD10G1322400' => 'mdo', 'MD11G1123300' => 'mdo', 'MD11G1157600' => 'mdo', 'Medtr2g084875' => 'mtr', 'Medtr2g088130' => 'mtr', 'Medtr4g055310' => 'mtr', 'Medtr4g061070' => 'mtr', 'Medtr4g132250' => 'mtr', 'MELO3C004795.2' => 'cme', 'MELO3C004797.2' => 'cme', 'MELO3C007396.2' => 'cme', 'MELO3C019277.2' => 'cme', 'MELO3C021449.2' => 'cme', 'MELO3C025736.2' => 'cme', 'Migut.D02175' => 'egut', 'Migut.H01573' => 'egut', 'Migut.M01327' => 'egut', 'Migut.N02513' => 'egut', 'MSTRG.14638' => 'ama', 'MSTRG.18632' => 'ama', 'MSTRG.7203' => 'ama', 'Nitab4.5_0000533g0140' => 'nta', 'Nitab4.5_0000888g0150' => 'nta', 'Nitab4.5_0001453g0040' => 'nta', 'Nitab4.5_0002827g0090' => 'nta', 'Nitab4.5_0003082g0040' => 'nta', 'Nitab4.5_0007799g0040' => 'nta', 'Nitab4.5_0008983g0010' => 'nta', 'Nitab4.5_0009017g0020' => 'nta', 'Nn1g02132' => 'nnu', 'Nn1g03492' => 'nnu', 'Nn1g03493' => 'nnu', 'Nn1g03494' => 'nnu', 'Nn1g07164' => 'nnu', 'Nn1g07291' => 'nnu', 'Nn2g10655' => 'nnu', 'Nn2g11652' => 'nnu', 'Nn2g14008' => 'nnu', 'Nn3g17476' => 'nnu', 'Nn3g17477' => 'nnu', 'Nn4g22370' => 'nnu', 'Nn4g25255' => 'nnu', 'Nn5g27755' => 'nnu', 'Nn6g34260' => 'nnu', 'Nn6g35041' => 'nnu', 'Oeu005924.1' => 'oeu', 'Oeu008383.1' => 'oeu', 'Oeu014928.1' => 'oeu', 'Oeu019889.1' => 'oeu', 'Oeu022271.1' => 'oeu', 'Oeu025271.1' => 'oeu', 'Oeu036302.1' => 'oeu', 'Oeu044100.1' => 'oeu', 'Os01g0528300' => 'osa', 'Os03g0286200' => 'osa', 'Os04g0406600' => 'osa', 'Os07g0512000' => 'osa', 'Os07g0694600' => 'osa', 'Os08g0411000' => 'osa', 'Os09g0565700' => 'osa', 'Os09g0566050' => 'osa', 'Os10g0523700' => 'osa', 'Peaxi162Scf00002g00514' => 'pax', 'Peaxi162Scf00047g01817' => 'pax', 'Peaxi162Scf00114g00001' => 'pax', 'Peaxi162Scf00147g00613' => 'pax', 'Peaxi162Scf00389g00425' => 'pax', 'PGR042G1139' => 'pgr', 'PGR042G3273' => 'pgr', 'PGR102G2180' => 'pgr', 'PGR119G0234' => 'pgr', 'PGR119G0668' => 'pgr', 'PGSC0003DMG400007122' => 'stu', 'PGSC0003DMG400016478' => 'stu', 'PGSC0003DMG400025374' => 'stu', 'PGSC0003DMG400026536' => 'stu', 'Phvul.003G079600' => 'pvu', 'Phvul.005G115600' => 'pvu', 'Phvul.005G127100' => 'pvu', 'Phvul.006G149500' => 'pvu', 'Phvul.006G149600' => 'pvu', 'Phvul.011G071800' => 'pvu', 'Phvul.011G090400' => 'pvu', 'Potri.004G013400' => 'ptr', 'Potri.004G188100' => 'ptr', 'Potri.008G195500' => 'ptr', 'Potri.009G148800' => 'ptr', 'Potri.011G004700' => 'ptr', 'Pp3c17_22810' => 'ppa', 'Pp3c18_4480' => 'ppa', 'Pp3c19_13030' => 'ppa', 'Pp3c1_33620' => 'ppa', 'Pp3c2_9380' => 'ppa', 'PRCOL_00001023' => 'pco', 'Prupe.3G216300' => 'ppe', 'Prupe.4G019500' => 'ppe', 'Prupe.6G092500' => 'ppe', 'Prupe.6G119200' => 'ppe', 'Psat0s1945g0080' => 'psa', 'Psat0s4167g0040' => 'psa', 'Psat1g185800' => 'psa', 'Psat4g006440' => 'psa', 'Psat4g006480' => 'psa', 'Psat4g168120' => 'psa', 'Psat5g255680' => 'psa', 'Psat5g261760' => 'psa', 'Psat7g222120' => 'psa', 'PSO063G7252' => 'pso', 'PSO170G4778' => 'pso', 'PSO210G2249' => 'pso', 'PSO339G2411' => 'pso', 'PSO339G2457' => 'pso', 'PSO339G2854' => 'pso', 'PSO339G4288' => 'pso', 'PSO339G4615' => 'pso', 'PSO384G2796' => 'pso', 'PSO384G2940' => 'pso', 'PSO384G4227' => 'pso', 'PSO478G1425' => 'pso', 'PSO541G3863' => 'pso', 'PSO675G0507' => 'pso', 'PSO782G0338' => 'pso', 'PSO832G0644' => 'pso', 'QL01p013664' => 'qlo', 'QL01p036598' => 'qlo', 'QL05p072984' => 'qlo', 'QL08p005768' => 'qlo', 'QL08p032743' => 'qlo', 'QL93p0073_0439' => 'qlo', 'QL93p0073_0444' => 'qlo', 'RcHm_v2.0_Chr5g0002851' => 'rch', 'RcHm_v2.0_Chr5g0055201' => 'rch', 'RcHm_v2.0_Chr5g0061191' => 'rch', 'RcHm_v2.0_Chr7g0203231' => 'rch', 'Rhsim01G0208100' => 'rsi', 'Rhsim01G0208200' => 'rsi', 'Rhsim02G0106500' => 'rsi', 'Rhsim03G0107900' => 'rsi', 'Rhsim06G0163400' => 'rsi', 'Rhsim13G0105200' => 'rsi', 'Sabra04G0006300' => 'sbr', 'Sabra04G0127000' => 'sbr', 'Sabra08G0148700' => 'sbr', 'Sabra09G0117400' => 'sbr', 'SalBow1G3326' => 'sbo', 'SalBow3G3228' => 'sbo', 'SalBow6G1634' => 'sbo', 'SalBow6G3603' => 'sbo', 'SalBow6G5266' => 'sbo', 'SalBow7G2265' => 'sbo', 'SalBow8G0850' => 'sbo', 'SalBow8G2592' => 'sbo', 'Sc05g0009240' => 'sci', 'Sc12g0002300' => 'sci', 'Sc21g0000100' => 'sci', 'Sc21g0004720' => 'sci', 'Sed0002949' => 'sed', 'Sed0004114' => 'sed', 'Sed0004306' => 'sed', 'Sed0006172' => 'sed', 'Sed0008413' => 'sed', 'Sed0013809' => 'sed', 'Sed0019556' => 'sed', 'SEGI_03570' => 'sgi', 'SEGI_07859' => 'sgi', 'SEGI_15042' => 'sgi', 'SEGI_16263' => 'sgi', 'SEGI_16552' => 'sgi', 'SEGI_24331' => 'sgi', 'SEGI_27316' => 'sgi', 'SEGI_29521' => 'sgi', 'SEGI_41342' => 'sgi', 'SGA_v2.0_scaffold27G11617' => 'sas', 'SGA_v2.0_scaffold316G48428' => 'sas', 'SGA_v2.0_scaffold49G18261' => 'sas', 'SGA_v2.0_scaffold7G03831' => 'sas', 'SGA_v2.0_scaffold93G28359' => 'sas', 'SHI02210' => 'shi', 'SHI06028' => 'shi', 'SHI06321' => 'shi', 'SMO111G0012' => 'smo', 'SMO228G0080' => 'smo', 'SMO356G0756' => 'smo', 'Solyc02g080620.3' => 'sly', 'Solyc06g074530.1' => 'sly', 'Solyc11g066890.1' => 'sly', 'Solyc11g072520.3' => 'sly', 'Sopen02g025330' => 'spe', 'Sopen06g031000' => 'spe', 'Sopen09g008240' => 'spe', 'Sopen09g025210' => 'spe', 'Sopen11g026600' => 'spe', 'Sopen11g030170' => 'spe', 'Sp1g10420' => 'spa', 'Sp3g06570' => 'spa', 'Sp4g10660' => 'spa', 'Sp5g16460' => 'spa', 'Sp6g22710' => 'spa', 'TAR365G0112' => 'tar', 'TAR369G0717' => 'tar', 'TAR374G0976' => 'tar', 'TAR623G1128' => 'tar', 'TAR626G1937' => 'tar', 'TAR627G0123' => 'tar', 'TAR628G0305' => 'tar', 'TAR636G1176' => 'tar', 'TAR636G2442' => 'tar', 'THA.LOC104800556' => 'tha', 'THA.LOC104809501' => 'tha', 'THA.LOC104815126' => 'tha', 'THA.LOC104815732' => 'tha', 'THA.LOC104823528' => 'tha', 'Thecc.02G365600' => 'tca', 'Thecc.06G222300' => 'tca', 'Thecc.09G261800' => 'tca', 'Thecc.09G291400' => 'tca', 'Thhalv10003028m.g' => 'esa', 'Thhalv10007886m.g' => 'esa', 'Thhalv10016085m.g' => 'esa', 'Thhalv10016681m.g' => 'esa', 'Thhalv10020951m.g' => 'esa', 'TPR.G15598' => 'tpr', 'TPR.G29305' => 'tpr', 'TPR.G32395' => 'tpr', 'TPR.G36998' => 'tpr', 'TPR.G4227' => 'tpr', 'TWI18G1433' => 'twi', 'TWI31G0755' => 'twi', 'TWI38G0912' => 'twi', 'TWI75G1097' => 'twi', 'TWI75G1619' => 'twi', 'TWI79G1336' => 'twi', 'unitig_0.g943' => 'ugi', 'unitig_0.g944' => 'ugi', 'unitig_22.g6646' => 'ugi', 'unitig_37.g12681' => 'ugi', 'unitig_8.g3290' => 'ugi', 'vmacro03278' => 'vma', 'vmacro12197' => 'vma', 'vmacro14478' => 'vma', 'vmacro15787' => 'vma', 'vmacro15789' => 'vma', 'vmacro15790' => 'vma', 'vmacro15806' => 'vma', 'vmacro22907' => 'vma', 'vmacro22908' => 'vma', 'vmacro22909' => 'vma', 'vmacro23108' => 'vma', 'VMungo0540G0540' => 'vmu', 'VMungo0540G2468' => 'vmu', 'VMungo1080G0390' => 'vmu', 'VMungo1080G1165' => 'vmu', 'VMungo1127G0170' => 'vmu', 'VMungo1127G2099' => 'vmu', 'VMungo1215G3013' => 'vmu', 'Zm00001eb013110' => 'zma', 'Zm00001eb084260' => 'zma', 'Zm00001eb096110' => 'zma', 'Zm00001eb217510' => 'zma', 'Zm00001eb322550' => 'zma', 'Zm00001eb390770' => 'zma', 'Zm00001eb397170' => 'zma', 'Zm00001eb404610' => 'zma', 'Zm00001eb421790' => 'zma' ), 'gf_id' => 'HOM05D000911', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000911' ), 'data_identifier' => 'HOM05D000911', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000911', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27780' => 'bna', 'A03p35380' => 'bna', 'A04p21160' => 'bna', 'A05p40570' => 'bna', 'A06p26900' => 'bna', 'A08p33230' => 'bna', 'A09p65960' => 'bna', 'A10p18290' => 'bna', 'Aa31LG1G12990' => 'aar', 'Aa31LG1G2980' => 'aar', 'Aa31LG4G14320' => 'aar', 'Aa31LG7G11800' => 'aar', 'Aa31sc36G50' => 'aar', 'Aa31sc36G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3721' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5459' => 'aag', 'Actinidia03028' => 'ach', 'Actinidia03753' => 'ach', 'Actinidia04187' => 'ach', 'Actinidia05509' => 'ach', 'Actinidia24180' => 'ach', 'Actinidia26906' => 'ach', 'Actinidia37097' => 'ach', 'Actinidia38249' => 'ach', 'Ah.01g003470' => 'amhyb', 'Ah.01g004580' => 'amhyb', 'Ah.01g014850' => 'amhyb', 'Ah.01g016830' => 'amhyb', 'Ah.14g088000' => 'amhyb', 'AL1G22980' => 'aly', 'AL3G18990' => 'aly', 'AL4G22440' => 'aly', 'AL4G33180' => 'aly', 'AL5G22920' => 'aly', 'AL6G33660' => 'aly', 'AL8G20720' => 'aly', 'Aqoxy1G00935' => 'aox', 'Aqoxy1G02094' => 'aox', 'Aqoxy2G01239' => 'aox', 'Aqoxy4G01870' => 'aox', 'Aqoxy7G00450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.36ZVTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71EM27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5D6C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH3WRE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3NCM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RIM768' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YB5YRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z36GDV' => 'arhy', 'AT1G08250' => 'ath', 'AT1G11790' => 'ath', 'AT2G27820' => 'ath', 'AT3G07630' => 'ath', 'AT3G44720' => 'ath', 'AT5G22630' => 'ath', 'ATR0693G304' => 'atr', 'ATR0794G109' => 'atr', 'ATR0820G120' => 'atr', 'ATR1159G064' => 'atr', 'Atru.chr10.2239' => 'acertr', 'Atru.chr3.3371' => 'acertr', 'Atru.chr6.3202' => 'acertr', 'AUR62006499' => 'cqu', 'AUR62012718' => 'cqu', 'AUR62021938' => 'cqu', 'AUR62023932' => 'cqu', 'AUR62025034' => 'cqu', 'AUR62025035' => 'cqu', 'AUR62038307' => 'cqu', 'AUR62043466' => 'cqu', 'BcaB02g10748' => 'bca', 'BcaB03g13231' => 'bca', 'BcaB03g14689' => 'bca', 'BcaB05g22716' => 'bca', 'BcaB06g28172' => 'bca', 'BcaB08g36413' => 'bca', 'BcaC01g02186' => 'bca', 'BcaC01g04272' => 'bca', 'BcaC02g08080' => 'bca', 'BcaC02g08227' => 'bca', 'BcaC03g13901' => 'bca', 'BcaC04g19593' => 'bca', 'BcaC04g20874' => 'bca', 'BcaC05g29557' => 'bca', 'BcaC06g35505' => 'bca', 'BcaC07g41954' => 'bca', 'BcaC07g41955' => 'bca', 'BcaC07g41956' => 'bca', 'BcaC07g42519' => 'bca', 'BcaC07g42520' => 'bca', 'BcaC07g42523' => 'bca', 'BcaC07g42524' => 'bca', 'BcaC07g42525' => 'bca', 'BcaC08g47480' => 'bca', 'BcaC08g47481' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00530' => 'bna', 'BolC2t07178H' => 'bol', 'BolC3t16567H' => 'bol', 'BolC4t27234H' => 'bol', 'BolC5t29728H' => 'bol', 'BolC5t34622H' => 'bol', 'BolC6t40321H' => 'bol', 'BolC7t42028H' => 'bol', 'BolC8t49125H' => 'bol', 'BolC8t52538H' => 'bol', 'BolC8t52539H' => 'bol', 'BolC9t56681H' => 'bol', 'BolC9t58266H' => 'bol', 'BolSC21t60294H' => 'bol', 'BraA02t05670Z' => 'bra', 'BraA03t12716Z' => 'bra', 'BraA04t17685Z' => 'bra', 'BraA05t22788Z' => 'bra', 'BraA06t24032Z' => 'bra', 'BraA06t25625Z' => 'bra', 'BraA07t27930Z' => 'bra', 'BraA08t35242Z' => 'bra', 'BraA09t38609Z' => 'bra', 'BraA10t43905Z' => 'bra', 'C02p11060' => 'bna', 'C03p42990' => 'bna', 'C03p67310' => 'bna', 'C04p56990' => 'bna', 'C04p58660' => 'bna', 'C05p09890' => 'bna', 'C05p59680' => 'bna', 'C06p19830' => 'bna', 'C06p53040' => 'bna', 'C07p15230' => 'bna', 'C08p50070' => 'bna', 'C08p50090' => 'bna', 'C09p38330' => 'bna', 'C09p53940' => 'bna', 'CAN.G1014.1' => 'can', 'CAN.G644.30' => 'can', 'CAN.G84.47' => 'can', 'CAN.G919.8' => 'can', 'CANSAT54G0113' => 'cansat', 'CANSAT54G1286' => 'cansat', 'CANSAT64G1020' => 'cansat', 'CARHR008080' => 'chi', 'CARHR008090' => 'chi', 'CARHR012130' => 'chi', 'CARHR038390' => 'chi', 'CARHR082330' => 'chi', 'CARHR120520' => 'chi', 'CARHR151470' => 'chi', 'CARHR190950' => 'chi', 'Carub.0001s0760' => 'cru', 'Carub.0001s1146' => 'cru', 'Carub.0003s0721' => 'cru', 'Carub.0004s0858' => 'cru', 'Carub.0005s1040' => 'cru', 'Carub.0006s2035' => 'cru', 'Carub.0015s0005' => 'cru', 'Ca_01607_v3' => 'car', 'Ca_01677_v3' => 'car', 'Ca_06087_v3' => 'car', 'Ca_19238_v3' => 'car', 'Ca_19373_v3' => 'car', 'Ca_21079_v3' => 'car', 'CBR_g54016' => 'cbr', 'CBR_g54018' => 'cbr', 'CBR_g54020' => 'cbr', 'Cc01_g09780' => 'ccan', 'Cc01_g11680' => 'ccan', 'Cc02_g15610' => 'ccan', 'Cc05_g04350' => 'ccan', 'Cc09_g01580' => 'ccan', 'CDE01G0795' => 'cde', 'CDE02G2024' => 'cde', 'CDE02G2260' => 'cde', 'CDE02G4561' => 'cde', 'CDE05G2733' => 'cde', 'CDE05G3422' => 'cde', 'CDE06G2003' => 'cde', 'CDE08G0576' => 'cde', 'CDE09G0048' => 'cde', 'CDE11G0805' => 'cde', 'Cfa003644' => 'cfa', 'Cfa006290' => 'cfa', 'Cfa010080' => 'cfa', 'Cfa011376' => 'cfa', 'Cfa011576' => 'cfa', 'Cfa011577' => 'cfa', 'Cfa014389' => 'cfa', 'Ciclev10006044m.g' => 'ccl', 'Ciclev10006954m.g' => 'ccl', 'Ciclev10015131m.g' => 'ccl', 'Ciclev10015580m.g' => 'ccl', 'Ciclev10028359m.g' => 'ccl', 'Ciclev10028573m.g' => 'ccl', 'CiPaw.03G159300' => 'cil', 'CiPaw.04G115100' => 'cil', 'CiPaw.09G092800' => 'cil', 'CiPaw.10G071800' => 'cil', 'CiPaw.13G105800' => 'cil', 'CiPaw.13G141000' => 'cil', 'CiPaw.14G103400' => 'cil', 'ClCG01G012700' => 'cla', 'ClCG01G012720' => 'cla', 'ClCG01G021920' => 'cla', 'ClCG02G008870' => 'cla', 'ClCG02G020840' => 'cla', 'ClCG02G021930' => 'cla', 'COL.COLO4_19302' => 'col', 'COL.COLO4_25262' => 'col', 'COL.COLO4_31788' => 'col', 'Cpa.g.c34684' => 'cpa', 'Cpa.g.c36520.1' => 'cpa', 'Cpa.g.c45626' => 'cpa', 'Cpa.g.sc121.17' => 'cpa', 'Cpa.g.sc13.22' => 'cpa', 'Cpa.g.sc87.88' => 'cpa', 'Cre06.g261800' => 'cre', 'CsaV3_1G014500' => 'csa', 'CsaV3_1G014510' => 'csa', 'CsaV3_2G034880' => 'csa', 'CsaV3_6G014760' => 'csa', 'CsaV3_6G021500' => 'csa', 'CsaV3_6G048980' => 'csa', 'CSS0002511' => 'camsi', 'CSS0007556' => 'camsi', 'CSS0008532' => 'camsi', 'CSS0009709' => 'camsi', 'CSS0010486' => 'camsi', 'CSS0016768' => 'camsi', 'CSS0023512' => 'camsi', 'CSS0025341' => 'camsi', 'CSS0027999' => 'camsi', 'CSS0028944' => 'camsi', 'CSS0032292' => 'camsi', 'CSS0032464' => 'camsi', 'CSS0037153' => 'camsi', 'CSS0039256' => 'camsi', 'CSS0048392' => 'camsi', 'CSS0050458' => 'camsi', 'DCAR_004224' => 'dca', 'DCAR_006147' => 'dca', 'DCAR_006465' => 'dca', 'DCAR_008159' => 'dca', 'DCAR_012164' => 'dca', 'DCAR_019764' => 'dca', 'Dinv05418' => 'din', 'Dinv10839' => 'din', 'Dinv12521' => 'din', 'Dinv13900' => 'din', 'Dinv29426' => 'din', 'Duzib150G0263' => 'dzi', 'Duzib168G1178' => 'dzi', 'Duzib168G1924' => 'dzi', 'Duzib170G0299' => 'dzi', 'Duzib170G0813' => 'dzi', 'Duzib235G1128' => 'dzi', 'Duzib248G1060' => 'dzi', 'ECA232G1910' => 'eca', 'ECA233G4621' => 'eca', 'ECA238G1216' => 'eca', 'ECA238G1784' => 'eca', 'ECA248G1242' => 'eca', 'EL10Ac8g20071' => 'bvu', 'EL10Ac9g21086' => 'bvu', 'EL10Ac9g22407' => 'bvu', 'EL10Ac9g22412' => 'bvu', 'Eucgr.A01119' => 'egr', 'Eucgr.E04043' => 'egr', 'Eucgr.J00428' => 'egr', 'Eucgr.J00958' => 'egr', 'FAN11G3091' => 'fan', 'FAN11G3651' => 'fan', 'FAN16G2566' => 'fan', 'FAN21G3155' => 'fan', 'FAN21G3400' => 'fan', 'FAN21G3543' => 'fan', 'FAN25G0234' => 'fan', 'FAN25G1422' => 'fan', 'FAN25G3392' => 'fan', 'FvH4_3g01940' => 'fve', 'FvH4_3g29870' => 'fve', 'FvH4_3g33680' => 'fve', 'Glyma.09G004200' => 'gma', 'Glyma.11G151288' => 'gma', 'Glyma.11G189100' => 'gma', 'Glyma.12G072500' => 'gma', 'Glyma.12G085500' => 'gma', 'Glyma.12G181800' => 'gma', 'Glyma.12G193000' => 'gma', 'Glyma.13G309300' => 'gma', 'Glyma.13G319000' => 'gma', 'Glyma.17G012600' => 'gma', 'Gohir.A06G148600' => 'ghi', 'Gohir.A07G115800' => 'ghi', 'Gohir.A08G003600' => 'ghi', 'Gohir.A09G093300' => 'ghi', 'Gohir.A09G105400' => 'ghi', 'Gohir.A09G105500' => 'ghi', 'Gohir.D06G154600' => 'ghi', 'Gohir.D07G120200' => 'ghi', 'Gohir.D08G013900' => 'ghi', 'Gohir.D09G093100' => 'ghi', 'Gohir.D09G102200' => 'ghi', 'Gohir.D09G102300' => 'ghi', 'Gorai.001G129400' => 'gra', 'Gorai.004G008200' => 'gra', 'Gorai.006G109800' => 'gra', 'Gorai.006G119500' => 'gra', 'Gorai.006G121300' => 'gra', 'Gorai.010G180700' => 'gra', 'GSVIVG01012716001' => 'vvi', 'GSVIVG01025118001' => 'vvi', 'GSVIVG01030439001' => 'vvi', 'GSVIVG01031397001' => 'vvi', 'HanXRQChr01g0004201' => 'han', 'HanXRQChr02g0054941' => 'han', 'HanXRQChr05g0141811' => 'han', 'HanXRQChr07g0197751' => 'han', 'HanXRQChr11g0346691' => 'han', 'HanXRQChr13g0396971' => 'han', 'HanXRQChr14g0432951' => 'han', 'HanXRQChr14g0452001' => 'han', 'HanXRQChr15g0496681' => 'han', 'HanXRQChr17g0557491' => 'han', 'HanXRQChr17g0557501' => 'han', 'Haze_06809' => 'cav', 'Haze_12852' => 'cav', 'Haze_15850' => 'cav', 'Haze_23446' => 'cav', 'Haze_23942' => 'cav', 'Haze_23943' => 'cav', 'Hma1.2p1_0091F.1_g046450' => 'hma', 'Hma1.2p1_0128F.1_g059910' => 'hma', 'Hma1.2p1_0249F.1_g102260' => 'hma', 'Hma1.2p1_0453F.1_g156190' => 'hma', 'Hma1.2p1_0695F.1_g204380' => 'hma', 'Hma1.2p1_0749F.1_g212650' => 'hma', 'Hma1.2p1_2156F.1_g315420' => 'hma', 'Hma1.2p1_2686F.1_g326940' => 'hma', 'HPP92_006428' => 'vpl', 'HPP92_012069' => 'vpl', 'HPP92_014129' => 'vpl', 'HPP92_014133' => 'vpl', 'HPP92_017315' => 'vpl', 'HPP92_026445' => 'vpl', 'HPP92_026446' => 'vpl', 'Hund00774' => 'sun', 'Hund07682' => 'sun', 'Hund21413' => 'sun', 'Hund23462' => 'sun', 'Hund23463' => 'sun', 'Lalb_Chr03g0027911' => 'lal', 'Lalb_Chr13g0304271' => 'lal', 'Lalb_Chr19g0137471' => 'lal', 'Lalb_Chr22g0350651' => 'lal', 'Lalb_Chr24g0395151' => 'lal', 'Lj1A1231T40' => 'lonja', 'Lj1A221T48' => 'lonja', 'Lj1C924T12' => 'lonja', 'Lj2C993G6' => 'lonja', 'Lj3g0005790' => 'lja', 'Lj3g0015432' => 'lja', 'Lj3g0017722' => 'lja', 'Lj3g0018497' => 'lja', 'Lj4g0025071' => 'lja', 'Lsat_1_v5_gn_1_129680' => 'lsa', 'Lsat_1_v5_gn_2_25321' => 'lsa', 'Lsat_1_v5_gn_2_95461' => 'lsa', 'Lsat_1_v5_gn_4_159620' => 'lsa', 'Lsat_1_v5_gn_6_41301' => 'lsa', 'Lsat_1_v5_gn_6_74660' => 'lsa', 'Lsat_1_v5_gn_7_11520' => 'lsa', 'Lsat_1_v5_gn_9_67680' => 'lsa', 'Manes.04G008300' => 'mes', 'Manes.04G008400' => 'mes', 'Manes.04G026500' => 'mes', 'Manes.10G135300' => 'mes', 'Manes.11G157300' => 'mes', 'Manes.12G074000' => 'mes', 'Manes.16G006200' => 'mes', 'Manes.17G026400' => 'mes', 'Mapoly0024s0086' => 'mpo', 'Mapoly0024s0087' => 'mpo', 'Mapoly0071s0057' => 'mpo', 'Mapoly0204s0012' => 'mpo', 'MBI04_g37681_MAGBIO' => 'mbi', 'MBI05_g17779_MAGBIO' => 'mbi', 'MBI12_g31184_MAGBIO' => 'mbi', 'MBI17_g11083_MAGBIO' => 'mbi', 'MBI18_g03883_MAGBIO' => 'mbi', 'MBI18_g28940_MAGBIO' => 'mbi', 'MCO01G690' => 'mco', 'MD03G1109900' => 'mdo', 'MD03G1134800' => 'mdo', 'MD05G1348000' => 'mdo', 'MD10G1322400' => 'mdo', 'MD11G1123300' => 'mdo', 'MD11G1157600' => 'mdo', 'Medtr2g084875' => 'mtr', 'Medtr2g088130' => 'mtr', 'Medtr4g055310' => 'mtr', 'Medtr4g061070' => 'mtr', 'Medtr4g132250' => 'mtr', 'MELO3C004795.2' => 'cme', 'MELO3C004797.2' => 'cme', 'MELO3C007396.2' => 'cme', 'MELO3C019277.2' => 'cme', 'MELO3C021449.2' => 'cme', 'MELO3C025736.2' => 'cme', 'Migut.D02175' => 'egut', 'Migut.H01573' => 'egut', 'Migut.M01327' => 'egut', 'Migut.N02513' => 'egut', 'MSTRG.14638' => 'ama', 'MSTRG.18632' => 'ama', 'MSTRG.7203' => 'ama', 'Nitab4.5_0000533g0140' => 'nta', 'Nitab4.5_0000888g0150' => 'nta', 'Nitab4.5_0001453g0040' => 'nta', 'Nitab4.5_0002827g0090' => 'nta', 'Nitab4.5_0003082g0040' => 'nta', 'Nitab4.5_0007799g0040' => 'nta', 'Nitab4.5_0008983g0010' => 'nta', 'Nitab4.5_0009017g0020' => 'nta', 'Nn1g02132' => 'nnu', 'Nn1g03492' => 'nnu', 'Nn1g03493' => 'nnu', 'Nn1g03494' => 'nnu', 'Nn1g07164' => 'nnu', 'Nn1g07291' => 'nnu', 'Nn2g10655' => 'nnu', 'Nn2g11652' => 'nnu', 'Nn2g14008' => 'nnu', 'Nn3g17476' => 'nnu', 'Nn3g17477' => 'nnu', 'Nn4g22370' => 'nnu', 'Nn4g25255' => 'nnu', 'Nn5g27755' => 'nnu', 'Nn6g34260' => 'nnu', 'Nn6g35041' => 'nnu', 'Oeu005924.1' => 'oeu', 'Oeu008383.1' => 'oeu', 'Oeu014928.1' => 'oeu', 'Oeu019889.1' => 'oeu', 'Oeu022271.1' => 'oeu', 'Oeu025271.1' => 'oeu', 'Oeu036302.1' => 'oeu', 'Oeu044100.1' => 'oeu', 'Os01g0528300' => 'osa', 'Os03g0286200' => 'osa', 'Os04g0406600' => 'osa', 'Os07g0512000' => 'osa', 'Os07g0694600' => 'osa', 'Os08g0411000' => 'osa', 'Os09g0565700' => 'osa', 'Os09g0566050' => 'osa', 'Os10g0523700' => 'osa', 'Peaxi162Scf00002g00514' => 'pax', 'Peaxi162Scf00047g01817' => 'pax', 'Peaxi162Scf00114g00001' => 'pax', 'Peaxi162Scf00147g00613' => 'pax', 'Peaxi162Scf00389g00425' => 'pax', 'PGR042G1139' => 'pgr', 'PGR042G3273' => 'pgr', 'PGR102G2180' => 'pgr', 'PGR119G0234' => 'pgr', 'PGR119G0668' => 'pgr', 'PGSC0003DMG400007122' => 'stu', 'PGSC0003DMG400016478' => 'stu', 'PGSC0003DMG400025374' => 'stu', 'PGSC0003DMG400026536' => 'stu', 'Phvul.003G079600' => 'pvu', 'Phvul.005G115600' => 'pvu', 'Phvul.005G127100' => 'pvu', 'Phvul.006G149500' => 'pvu', 'Phvul.006G149600' => 'pvu', 'Phvul.011G071800' => 'pvu', 'Phvul.011G090400' => 'pvu', 'Potri.004G013400' => 'ptr', 'Potri.004G188100' => 'ptr', 'Potri.008G195500' => 'ptr', 'Potri.009G148800' => 'ptr', 'Potri.011G004700' => 'ptr', 'Pp3c17_22810' => 'ppa', 'Pp3c18_4480' => 'ppa', 'Pp3c19_13030' => 'ppa', 'Pp3c1_33620' => 'ppa', 'Pp3c2_9380' => 'ppa', 'PRCOL_00001023' => 'pco', 'Prupe.3G216300' => 'ppe', 'Prupe.4G019500' => 'ppe', 'Prupe.6G092500' => 'ppe', 'Prupe.6G119200' => 'ppe', 'Psat0s1945g0080' => 'psa', 'Psat0s4167g0040' => 'psa', 'Psat1g185800' => 'psa', 'Psat4g006440' => 'psa', 'Psat4g006480' => 'psa', 'Psat4g168120' => 'psa', 'Psat5g255680' => 'psa', 'Psat5g261760' => 'psa', 'Psat7g222120' => 'psa', 'PSO063G7252' => 'pso', 'PSO170G4778' => 'pso', 'PSO210G2249' => 'pso', 'PSO339G2411' => 'pso', 'PSO339G2457' => 'pso', 'PSO339G2854' => 'pso', 'PSO339G4288' => 'pso', 'PSO339G4615' => 'pso', 'PSO384G2796' => 'pso', 'PSO384G2940' => 'pso', 'PSO384G4227' => 'pso', 'PSO478G1425' => 'pso', 'PSO541G3863' => 'pso', 'PSO675G0507' => 'pso', 'PSO782G0338' => 'pso', 'PSO832G0644' => 'pso', 'QL01p013664' => 'qlo', 'QL01p036598' => 'qlo', 'QL05p072984' => 'qlo', 'QL08p005768' => 'qlo', 'QL08p032743' => 'qlo', 'QL93p0073_0439' => 'qlo', 'QL93p0073_0444' => 'qlo', 'RcHm_v2.0_Chr5g0002851' => 'rch', 'RcHm_v2.0_Chr5g0055201' => 'rch', 'RcHm_v2.0_Chr5g0061191' => 'rch', 'RcHm_v2.0_Chr7g0203231' => 'rch', 'Rhsim01G0208100' => 'rsi', 'Rhsim01G0208200' => 'rsi', 'Rhsim02G0106500' => 'rsi', 'Rhsim03G0107900' => 'rsi', 'Rhsim06G0163400' => 'rsi', 'Rhsim13G0105200' => 'rsi', 'Sabra04G0006300' => 'sbr', 'Sabra04G0127000' => 'sbr', 'Sabra08G0148700' => 'sbr', 'Sabra09G0117400' => 'sbr', 'SalBow1G3326' => 'sbo', 'SalBow3G3228' => 'sbo', 'SalBow6G1634' => 'sbo', 'SalBow6G3603' => 'sbo', 'SalBow6G5266' => 'sbo', 'SalBow7G2265' => 'sbo', 'SalBow8G0850' => 'sbo', 'SalBow8G2592' => 'sbo', 'Sc05g0009240' => 'sci', 'Sc12g0002300' => 'sci', 'Sc21g0000100' => 'sci', 'Sc21g0004720' => 'sci', 'Sed0002949' => 'sed', 'Sed0004114' => 'sed', 'Sed0004306' => 'sed', 'Sed0006172' => 'sed', 'Sed0008413' => 'sed', 'Sed0013809' => 'sed', 'Sed0019556' => 'sed', 'SEGI_03570' => 'sgi', 'SEGI_07859' => 'sgi', 'SEGI_15042' => 'sgi', 'SEGI_16263' => 'sgi', 'SEGI_16552' => 'sgi', 'SEGI_24331' => 'sgi', 'SEGI_27316' => 'sgi', 'SEGI_29521' => 'sgi', 'SEGI_41342' => 'sgi', 'SGA_v2.0_scaffold27G11617' => 'sas', 'SGA_v2.0_scaffold316G48428' => 'sas', 'SGA_v2.0_scaffold49G18261' => 'sas', 'SGA_v2.0_scaffold7G03831' => 'sas', 'SGA_v2.0_scaffold93G28359' => 'sas', 'SHI02210' => 'shi', 'SHI06028' => 'shi', 'SHI06321' => 'shi', 'SMO111G0012' => 'smo', 'SMO228G0080' => 'smo', 'SMO356G0756' => 'smo', 'Solyc02g080620.3' => 'sly', 'Solyc06g074530.1' => 'sly', 'Solyc11g066890.1' => 'sly', 'Solyc11g072520.3' => 'sly', 'Sopen02g025330' => 'spe', 'Sopen06g031000' => 'spe', 'Sopen09g008240' => 'spe', 'Sopen09g025210' => 'spe', 'Sopen11g026600' => 'spe', 'Sopen11g030170' => 'spe', 'Sp1g10420' => 'spa', 'Sp3g06570' => 'spa', 'Sp4g10660' => 'spa', 'Sp5g16460' => 'spa', 'Sp6g22710' => 'spa', 'TAR365G0112' => 'tar', 'TAR369G0717' => 'tar', 'TAR374G0976' => 'tar', 'TAR623G1128' => 'tar', 'TAR626G1937' => 'tar', 'TAR627G0123' => 'tar', 'TAR628G0305' => 'tar', 'TAR636G1176' => 'tar', 'TAR636G2442' => 'tar', 'THA.LOC104800556' => 'tha', 'THA.LOC104809501' => 'tha', 'THA.LOC104815126' => 'tha', 'THA.LOC104815732' => 'tha', 'THA.LOC104823528' => 'tha', 'Thecc.02G365600' => 'tca', 'Thecc.06G222300' => 'tca', 'Thecc.09G261800' => 'tca', 'Thecc.09G291400' => 'tca', 'Thhalv10003028m.g' => 'esa', 'Thhalv10007886m.g' => 'esa', 'Thhalv10016085m.g' => 'esa', 'Thhalv10016681m.g' => 'esa', 'Thhalv10020951m.g' => 'esa', 'TPR.G15598' => 'tpr', 'TPR.G29305' => 'tpr', 'TPR.G32395' => 'tpr', 'TPR.G36998' => 'tpr', 'TPR.G4227' => 'tpr', 'TWI18G1433' => 'twi', 'TWI31G0755' => 'twi', 'TWI38G0912' => 'twi', 'TWI75G1097' => 'twi', 'TWI75G1619' => 'twi', 'TWI79G1336' => 'twi', 'unitig_0.g943' => 'ugi', 'unitig_0.g944' => 'ugi', 'unitig_22.g6646' => 'ugi', 'unitig_37.g12681' => 'ugi', 'unitig_8.g3290' => 'ugi', 'vmacro03278' => 'vma', 'vmacro12197' => 'vma', 'vmacro14478' => 'vma', 'vmacro15787' => 'vma', 'vmacro15789' => 'vma', 'vmacro15790' => 'vma', 'vmacro15806' => 'vma', 'vmacro22907' => 'vma', 'vmacro22908' => 'vma', 'vmacro22909' => 'vma', 'vmacro23108' => 'vma', 'VMungo0540G0540' => 'vmu', 'VMungo0540G2468' => 'vmu', 'VMungo1080G0390' => 'vmu', 'VMungo1080G1165' => 'vmu', 'VMungo1127G0170' => 'vmu', 'VMungo1127G2099' => 'vmu', 'VMungo1215G3013' => 'vmu', 'Zm00001eb013110' => 'zma', 'Zm00001eb084260' => 'zma', 'Zm00001eb096110' => 'zma', 'Zm00001eb217510' => 'zma', 'Zm00001eb322550' => 'zma', 'Zm00001eb390770' => 'zma', 'Zm00001eb397170' => 'zma', 'Zm00001eb404610' => 'zma', 'Zm00001eb421790' => 'zma' ) $gf_id = 'HOM05D000911' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000911' ) $data_identifier = 'HOM05D000911' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 16, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 5, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 6, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 8, 'nnu' => (int) 16, 'oeu' => (int) 8, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 5, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 16, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421790' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000911', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27780' => 'bna', 'A03p35380' => 'bna', 'A04p21160' => 'bna', 'A05p40570' => 'bna', 'A06p26900' => 'bna', 'A08p33230' => 'bna', 'A09p65960' => 'bna', 'A10p18290' => 'bna', 'Aa31LG1G12990' => 'aar', 'Aa31LG1G2980' => 'aar', 'Aa31LG4G14320' => 'aar', 'Aa31LG7G11800' => 'aar', 'Aa31sc36G50' => 'aar', 'Aa31sc36G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3721' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5459' => 'aag', 'Actinidia03028' => 'ach', 'Actinidia03753' => 'ach', 'Actinidia04187' => 'ach', 'Actinidia05509' => 'ach', 'Actinidia24180' => 'ach', 'Actinidia26906' => 'ach', 'Actinidia37097' => 'ach', 'Actinidia38249' => 'ach', 'Ah.01g003470' => 'amhyb', 'Ah.01g004580' => 'amhyb', 'Ah.01g014850' => 'amhyb', 'Ah.01g016830' => 'amhyb', 'Ah.14g088000' => 'amhyb', 'AL1G22980' => 'aly', 'AL3G18990' => 'aly', 'AL4G22440' => 'aly', 'AL4G33180' => 'aly', 'AL5G22920' => 'aly', 'AL6G33660' => 'aly', 'AL8G20720' => 'aly', 'Aqoxy1G00935' => 'aox', 'Aqoxy1G02094' => 'aox', 'Aqoxy2G01239' => 'aox', 'Aqoxy4G01870' => 'aox', 'Aqoxy7G00450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.36ZVTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71EM27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5D6C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH3WRE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3NCM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RIM768' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YB5YRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z36GDV' => 'arhy', 'AT1G08250' => 'ath', 'AT1G11790' => 'ath', 'AT2G27820' => 'ath', 'AT3G07630' => 'ath', 'AT3G44720' => 'ath', 'AT5G22630' => 'ath', 'ATR0693G304' => 'atr', 'ATR0794G109' => 'atr', 'ATR0820G120' => 'atr', 'ATR1159G064' => 'atr', 'Atru.chr10.2239' => 'acertr', 'Atru.chr3.3371' => 'acertr', 'Atru.chr6.3202' => 'acertr', 'AUR62006499' => 'cqu', 'AUR62012718' => 'cqu', 'AUR62021938' => 'cqu', 'AUR62023932' => 'cqu', 'AUR62025034' => 'cqu', 'AUR62025035' => 'cqu', 'AUR62038307' => 'cqu', 'AUR62043466' => 'cqu', 'BcaB02g10748' => 'bca', 'BcaB03g13231' => 'bca', 'BcaB03g14689' => 'bca', 'BcaB05g22716' => 'bca', 'BcaB06g28172' => 'bca', 'BcaB08g36413' => 'bca', 'BcaC01g02186' => 'bca', 'BcaC01g04272' => 'bca', 'BcaC02g08080' => 'bca', 'BcaC02g08227' => 'bca', 'BcaC03g13901' => 'bca', 'BcaC04g19593' => 'bca', 'BcaC04g20874' => 'bca', 'BcaC05g29557' => 'bca', 'BcaC06g35505' => 'bca', 'BcaC07g41954' => 'bca', 'BcaC07g41955' => 'bca', 'BcaC07g41956' => 'bca', 'BcaC07g42519' => 'bca', 'BcaC07g42520' => 'bca', 'BcaC07g42523' => 'bca', 'BcaC07g42524' => 'bca', 'BcaC07g42525' => 'bca', 'BcaC08g47480' => 'bca', 'BcaC08g47481' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00530' => 'bna', 'BolC2t07178H' => 'bol', 'BolC3t16567H' => 'bol', 'BolC4t27234H' => 'bol', 'BolC5t29728H' => 'bol', 'BolC5t34622H' => 'bol', 'BolC6t40321H' => 'bol', 'BolC7t42028H' => 'bol', 'BolC8t49125H' => 'bol', 'BolC8t52538H' => 'bol', 'BolC8t52539H' => 'bol', 'BolC9t56681H' => 'bol', 'BolC9t58266H' => 'bol', 'BolSC21t60294H' => 'bol', 'BraA02t05670Z' => 'bra', 'BraA03t12716Z' => 'bra', 'BraA04t17685Z' => 'bra', 'BraA05t22788Z' => 'bra', 'BraA06t24032Z' => 'bra', 'BraA06t25625Z' => 'bra', 'BraA07t27930Z' => 'bra', 'BraA08t35242Z' => 'bra', 'BraA09t38609Z' => 'bra', 'BraA10t43905Z' => 'bra', 'C02p11060' => 'bna', 'C03p42990' => 'bna', 'C03p67310' => 'bna', 'C04p56990' => 'bna', 'C04p58660' => 'bna', 'C05p09890' => 'bna', 'C05p59680' => 'bna', 'C06p19830' => 'bna', 'C06p53040' => 'bna', 'C07p15230' => 'bna', 'C08p50070' => 'bna', 'C08p50090' => 'bna', 'C09p38330' => 'bna', 'C09p53940' => 'bna', 'CAN.G1014.1' => 'can', 'CAN.G644.30' => 'can', 'CAN.G84.47' => 'can', 'CAN.G919.8' => 'can', 'CANSAT54G0113' => 'cansat', 'CANSAT54G1286' => 'cansat', 'CANSAT64G1020' => 'cansat', 'CARHR008080' => 'chi', 'CARHR008090' => 'chi', 'CARHR012130' => 'chi', 'CARHR038390' => 'chi', 'CARHR082330' => 'chi', 'CARHR120520' => 'chi', 'CARHR151470' => 'chi', 'CARHR190950' => 'chi', 'Carub.0001s0760' => 'cru', 'Carub.0001s1146' => 'cru', 'Carub.0003s0721' => 'cru', 'Carub.0004s0858' => 'cru', 'Carub.0005s1040' => 'cru', 'Carub.0006s2035' => 'cru', 'Carub.0015s0005' => 'cru', 'Ca_01607_v3' => 'car', 'Ca_01677_v3' => 'car', 'Ca_06087_v3' => 'car', 'Ca_19238_v3' => 'car', 'Ca_19373_v3' => 'car', 'Ca_21079_v3' => 'car', 'CBR_g54016' => 'cbr', 'CBR_g54018' => 'cbr', 'CBR_g54020' => 'cbr', 'Cc01_g09780' => 'ccan', 'Cc01_g11680' => 'ccan', 'Cc02_g15610' => 'ccan', 'Cc05_g04350' => 'ccan', 'Cc09_g01580' => 'ccan', 'CDE01G0795' => 'cde', 'CDE02G2024' => 'cde', 'CDE02G2260' => 'cde', 'CDE02G4561' => 'cde', 'CDE05G2733' => 'cde', 'CDE05G3422' => 'cde', 'CDE06G2003' => 'cde', 'CDE08G0576' => 'cde', 'CDE09G0048' => 'cde', 'CDE11G0805' => 'cde', 'Cfa003644' => 'cfa', 'Cfa006290' => 'cfa', 'Cfa010080' => 'cfa', 'Cfa011376' => 'cfa', 'Cfa011576' => 'cfa', 'Cfa011577' => 'cfa', 'Cfa014389' => 'cfa', 'Ciclev10006044m.g' => 'ccl', 'Ciclev10006954m.g' => 'ccl', 'Ciclev10015131m.g' => 'ccl', 'Ciclev10015580m.g' => 'ccl', 'Ciclev10028359m.g' => 'ccl', 'Ciclev10028573m.g' => 'ccl', 'CiPaw.03G159300' => 'cil', 'CiPaw.04G115100' => 'cil', 'CiPaw.09G092800' => 'cil', 'CiPaw.10G071800' => 'cil', 'CiPaw.13G105800' => 'cil', 'CiPaw.13G141000' => 'cil', 'CiPaw.14G103400' => 'cil', 'ClCG01G012700' => 'cla', 'ClCG01G012720' => 'cla', 'ClCG01G021920' => 'cla', 'ClCG02G008870' => 'cla', 'ClCG02G020840' => 'cla', 'ClCG02G021930' => 'cla', 'COL.COLO4_19302' => 'col', 'COL.COLO4_25262' => 'col', 'COL.COLO4_31788' => 'col', 'Cpa.g.c34684' => 'cpa', 'Cpa.g.c36520.1' => 'cpa', 'Cpa.g.c45626' => 'cpa', 'Cpa.g.sc121.17' => 'cpa', 'Cpa.g.sc13.22' => 'cpa', 'Cpa.g.sc87.88' => 'cpa', 'Cre06.g261800' => 'cre', 'CsaV3_1G014500' => 'csa', 'CsaV3_1G014510' => 'csa', 'CsaV3_2G034880' => 'csa', 'CsaV3_6G014760' => 'csa', 'CsaV3_6G021500' => 'csa', 'CsaV3_6G048980' => 'csa', 'CSS0002511' => 'camsi', 'CSS0007556' => 'camsi', 'CSS0008532' => 'camsi', 'CSS0009709' => 'camsi', 'CSS0010486' => 'camsi', 'CSS0016768' => 'camsi', 'CSS0023512' => 'camsi', 'CSS0025341' => 'camsi', 'CSS0027999' => 'camsi', 'CSS0028944' => 'camsi', 'CSS0032292' => 'camsi', 'CSS0032464' => 'camsi', 'CSS0037153' => 'camsi', 'CSS0039256' => 'camsi', 'CSS0048392' => 'camsi', 'CSS0050458' => 'camsi', 'DCAR_004224' => 'dca', 'DCAR_006147' => 'dca', 'DCAR_006465' => 'dca', 'DCAR_008159' => 'dca', 'DCAR_012164' => 'dca', 'DCAR_019764' => 'dca', 'Dinv05418' => 'din', 'Dinv10839' => 'din', 'Dinv12521' => 'din', 'Dinv13900' => 'din', 'Dinv29426' => 'din', 'Duzib150G0263' => 'dzi', 'Duzib168G1178' => 'dzi', 'Duzib168G1924' => 'dzi', 'Duzib170G0299' => 'dzi', 'Duzib170G0813' => 'dzi', 'Duzib235G1128' => 'dzi', 'Duzib248G1060' => 'dzi', 'ECA232G1910' => 'eca', 'ECA233G4621' => 'eca', 'ECA238G1216' => 'eca', 'ECA238G1784' => 'eca', 'ECA248G1242' => 'eca', 'EL10Ac8g20071' => 'bvu', 'EL10Ac9g21086' => 'bvu', 'EL10Ac9g22407' => 'bvu', 'EL10Ac9g22412' => 'bvu', 'Eucgr.A01119' => 'egr', 'Eucgr.E04043' => 'egr', 'Eucgr.J00428' => 'egr', 'Eucgr.J00958' => 'egr', 'FAN11G3091' => 'fan', 'FAN11G3651' => 'fan', 'FAN16G2566' => 'fan', 'FAN21G3155' => 'fan', 'FAN21G3400' => 'fan', 'FAN21G3543' => 'fan', 'FAN25G0234' => 'fan', 'FAN25G1422' => 'fan', 'FAN25G3392' => 'fan', 'FvH4_3g01940' => 'fve', 'FvH4_3g29870' => 'fve', 'FvH4_3g33680' => 'fve', 'Glyma.09G004200' => 'gma', 'Glyma.11G151288' => 'gma', 'Glyma.11G189100' => 'gma', 'Glyma.12G072500' => 'gma', 'Glyma.12G085500' => 'gma', 'Glyma.12G181800' => 'gma', 'Glyma.12G193000' => 'gma', 'Glyma.13G309300' => 'gma', 'Glyma.13G319000' => 'gma', 'Glyma.17G012600' => 'gma', 'Gohir.A06G148600' => 'ghi', 'Gohir.A07G115800' => 'ghi', 'Gohir.A08G003600' => 'ghi', 'Gohir.A09G093300' => 'ghi', 'Gohir.A09G105400' => 'ghi', 'Gohir.A09G105500' => 'ghi', 'Gohir.D06G154600' => 'ghi', 'Gohir.D07G120200' => 'ghi', 'Gohir.D08G013900' => 'ghi', 'Gohir.D09G093100' => 'ghi', 'Gohir.D09G102200' => 'ghi', 'Gohir.D09G102300' => 'ghi', 'Gorai.001G129400' => 'gra', 'Gorai.004G008200' => 'gra', 'Gorai.006G109800' => 'gra', 'Gorai.006G119500' => 'gra', 'Gorai.006G121300' => 'gra', 'Gorai.010G180700' => 'gra', 'GSVIVG01012716001' => 'vvi', 'GSVIVG01025118001' => 'vvi', 'GSVIVG01030439001' => 'vvi', 'GSVIVG01031397001' => 'vvi', 'HanXRQChr01g0004201' => 'han', 'HanXRQChr02g0054941' => 'han', 'HanXRQChr05g0141811' => 'han', 'HanXRQChr07g0197751' => 'han', 'HanXRQChr11g0346691' => 'han', 'HanXRQChr13g0396971' => 'han', 'HanXRQChr14g0432951' => 'han', 'HanXRQChr14g0452001' => 'han', 'HanXRQChr15g0496681' => 'han', 'HanXRQChr17g0557491' => 'han', 'HanXRQChr17g0557501' => 'han', 'Haze_06809' => 'cav', 'Haze_12852' => 'cav', 'Haze_15850' => 'cav', 'Haze_23446' => 'cav', 'Haze_23942' => 'cav', 'Haze_23943' => 'cav', 'Hma1.2p1_0091F.1_g046450' => 'hma', 'Hma1.2p1_0128F.1_g059910' => 'hma', 'Hma1.2p1_0249F.1_g102260' => 'hma', 'Hma1.2p1_0453F.1_g156190' => 'hma', 'Hma1.2p1_0695F.1_g204380' => 'hma', 'Hma1.2p1_0749F.1_g212650' => 'hma', 'Hma1.2p1_2156F.1_g315420' => 'hma', 'Hma1.2p1_2686F.1_g326940' => 'hma', 'HPP92_006428' => 'vpl', 'HPP92_012069' => 'vpl', 'HPP92_014129' => 'vpl', 'HPP92_014133' => 'vpl', 'HPP92_017315' => 'vpl', 'HPP92_026445' => 'vpl', 'HPP92_026446' => 'vpl', 'Hund00774' => 'sun', 'Hund07682' => 'sun', 'Hund21413' => 'sun', 'Hund23462' => 'sun', 'Hund23463' => 'sun', 'Lalb_Chr03g0027911' => 'lal', 'Lalb_Chr13g0304271' => 'lal', 'Lalb_Chr19g0137471' => 'lal', 'Lalb_Chr22g0350651' => 'lal', 'Lalb_Chr24g0395151' => 'lal', 'Lj1A1231T40' => 'lonja', 'Lj1A221T48' => 'lonja', 'Lj1C924T12' => 'lonja', 'Lj2C993G6' => 'lonja', 'Lj3g0005790' => 'lja', 'Lj3g0015432' => 'lja', 'Lj3g0017722' => 'lja', 'Lj3g0018497' => 'lja', 'Lj4g0025071' => 'lja', 'Lsat_1_v5_gn_1_129680' => 'lsa', 'Lsat_1_v5_gn_2_25321' => 'lsa', 'Lsat_1_v5_gn_2_95461' => 'lsa', 'Lsat_1_v5_gn_4_159620' => 'lsa', 'Lsat_1_v5_gn_6_41301' => 'lsa', 'Lsat_1_v5_gn_6_74660' => 'lsa', 'Lsat_1_v5_gn_7_11520' => 'lsa', 'Lsat_1_v5_gn_9_67680' => 'lsa', 'Manes.04G008300' => 'mes', 'Manes.04G008400' => 'mes', 'Manes.04G026500' => 'mes', 'Manes.10G135300' => 'mes', 'Manes.11G157300' => 'mes', 'Manes.12G074000' => 'mes', 'Manes.16G006200' => 'mes', 'Manes.17G026400' => 'mes', 'Mapoly0024s0086' => 'mpo', 'Mapoly0024s0087' => 'mpo', 'Mapoly0071s0057' => 'mpo', 'Mapoly0204s0012' => 'mpo', 'MBI04_g37681_MAGBIO' => 'mbi', 'MBI05_g17779_MAGBIO' => 'mbi', 'MBI12_g31184_MAGBIO' => 'mbi', 'MBI17_g11083_MAGBIO' => 'mbi', 'MBI18_g03883_MAGBIO' => 'mbi', 'MBI18_g28940_MAGBIO' => 'mbi', 'MCO01G690' => 'mco', 'MD03G1109900' => 'mdo', 'MD03G1134800' => 'mdo', 'MD05G1348000' => 'mdo', 'MD10G1322400' => 'mdo', 'MD11G1123300' => 'mdo', 'MD11G1157600' => 'mdo', 'Medtr2g084875' => 'mtr', 'Medtr2g088130' => 'mtr', 'Medtr4g055310' => 'mtr', 'Medtr4g061070' => 'mtr', 'Medtr4g132250' => 'mtr', 'MELO3C004795.2' => 'cme', 'MELO3C004797.2' => 'cme', 'MELO3C007396.2' => 'cme', 'MELO3C019277.2' => 'cme', 'MELO3C021449.2' => 'cme', 'MELO3C025736.2' => 'cme', 'Migut.D02175' => 'egut', 'Migut.H01573' => 'egut', 'Migut.M01327' => 'egut', 'Migut.N02513' => 'egut', 'MSTRG.14638' => 'ama', 'MSTRG.18632' => 'ama', 'MSTRG.7203' => 'ama', 'Nitab4.5_0000533g0140' => 'nta', 'Nitab4.5_0000888g0150' => 'nta', 'Nitab4.5_0001453g0040' => 'nta', 'Nitab4.5_0002827g0090' => 'nta', 'Nitab4.5_0003082g0040' => 'nta', 'Nitab4.5_0007799g0040' => 'nta', 'Nitab4.5_0008983g0010' => 'nta', 'Nitab4.5_0009017g0020' => 'nta', 'Nn1g02132' => 'nnu', 'Nn1g03492' => 'nnu', 'Nn1g03493' => 'nnu', 'Nn1g03494' => 'nnu', 'Nn1g07164' => 'nnu', 'Nn1g07291' => 'nnu', 'Nn2g10655' => 'nnu', 'Nn2g11652' => 'nnu', 'Nn2g14008' => 'nnu', 'Nn3g17476' => 'nnu', 'Nn3g17477' => 'nnu', 'Nn4g22370' => 'nnu', 'Nn4g25255' => 'nnu', 'Nn5g27755' => 'nnu', 'Nn6g34260' => 'nnu', 'Nn6g35041' => 'nnu', 'Oeu005924.1' => 'oeu', 'Oeu008383.1' => 'oeu', 'Oeu014928.1' => 'oeu', 'Oeu019889.1' => 'oeu', 'Oeu022271.1' => 'oeu', 'Oeu025271.1' => 'oeu', 'Oeu036302.1' => 'oeu', 'Oeu044100.1' => 'oeu', 'Os01g0528300' => 'osa', 'Os03g0286200' => 'osa', 'Os04g0406600' => 'osa', 'Os07g0512000' => 'osa', 'Os07g0694600' => 'osa', 'Os08g0411000' => 'osa', 'Os09g0565700' => 'osa', 'Os09g0566050' => 'osa', 'Os10g0523700' => 'osa', 'Peaxi162Scf00002g00514' => 'pax', 'Peaxi162Scf00047g01817' => 'pax', 'Peaxi162Scf00114g00001' => 'pax', 'Peaxi162Scf00147g00613' => 'pax', 'Peaxi162Scf00389g00425' => 'pax', 'PGR042G1139' => 'pgr', 'PGR042G3273' => 'pgr', 'PGR102G2180' => 'pgr', 'PGR119G0234' => 'pgr', 'PGR119G0668' => 'pgr', 'PGSC0003DMG400007122' => 'stu', 'PGSC0003DMG400016478' => 'stu', 'PGSC0003DMG400025374' => 'stu', 'PGSC0003DMG400026536' => 'stu', 'Phvul.003G079600' => 'pvu', 'Phvul.005G115600' => 'pvu', 'Phvul.005G127100' => 'pvu', 'Phvul.006G149500' => 'pvu', 'Phvul.006G149600' => 'pvu', 'Phvul.011G071800' => 'pvu', 'Phvul.011G090400' => 'pvu', 'Potri.004G013400' => 'ptr', 'Potri.004G188100' => 'ptr', 'Potri.008G195500' => 'ptr', 'Potri.009G148800' => 'ptr', 'Potri.011G004700' => 'ptr', 'Pp3c17_22810' => 'ppa', 'Pp3c18_4480' => 'ppa', 'Pp3c19_13030' => 'ppa', 'Pp3c1_33620' => 'ppa', 'Pp3c2_9380' => 'ppa', 'PRCOL_00001023' => 'pco', 'Prupe.3G216300' => 'ppe', 'Prupe.4G019500' => 'ppe', 'Prupe.6G092500' => 'ppe', 'Prupe.6G119200' => 'ppe', 'Psat0s1945g0080' => 'psa', 'Psat0s4167g0040' => 'psa', 'Psat1g185800' => 'psa', 'Psat4g006440' => 'psa', 'Psat4g006480' => 'psa', 'Psat4g168120' => 'psa', 'Psat5g255680' => 'psa', 'Psat5g261760' => 'psa', 'Psat7g222120' => 'psa', 'PSO063G7252' => 'pso', 'PSO170G4778' => 'pso', 'PSO210G2249' => 'pso', 'PSO339G2411' => 'pso', 'PSO339G2457' => 'pso', 'PSO339G2854' => 'pso', 'PSO339G4288' => 'pso', 'PSO339G4615' => 'pso', 'PSO384G2796' => 'pso', 'PSO384G2940' => 'pso', 'PSO384G4227' => 'pso', 'PSO478G1425' => 'pso', 'PSO541G3863' => 'pso', 'PSO675G0507' => 'pso', 'PSO782G0338' => 'pso', 'PSO832G0644' => 'pso', 'QL01p013664' => 'qlo', 'QL01p036598' => 'qlo', 'QL05p072984' => 'qlo', 'QL08p005768' => 'qlo', 'QL08p032743' => 'qlo', 'QL93p0073_0439' => 'qlo', 'QL93p0073_0444' => 'qlo', 'RcHm_v2.0_Chr5g0002851' => 'rch', 'RcHm_v2.0_Chr5g0055201' => 'rch', 'RcHm_v2.0_Chr5g0061191' => 'rch', 'RcHm_v2.0_Chr7g0203231' => 'rch', 'Rhsim01G0208100' => 'rsi', 'Rhsim01G0208200' => 'rsi', 'Rhsim02G0106500' => 'rsi', 'Rhsim03G0107900' => 'rsi', 'Rhsim06G0163400' => 'rsi', 'Rhsim13G0105200' => 'rsi', 'Sabra04G0006300' => 'sbr', 'Sabra04G0127000' => 'sbr', 'Sabra08G0148700' => 'sbr', 'Sabra09G0117400' => 'sbr', 'SalBow1G3326' => 'sbo', 'SalBow3G3228' => 'sbo', 'SalBow6G1634' => 'sbo', 'SalBow6G3603' => 'sbo', 'SalBow6G5266' => 'sbo', 'SalBow7G2265' => 'sbo', 'SalBow8G0850' => 'sbo', 'SalBow8G2592' => 'sbo', 'Sc05g0009240' => 'sci', 'Sc12g0002300' => 'sci', 'Sc21g0000100' => 'sci', 'Sc21g0004720' => 'sci', 'Sed0002949' => 'sed', 'Sed0004114' => 'sed', 'Sed0004306' => 'sed', 'Sed0006172' => 'sed', 'Sed0008413' => 'sed', 'Sed0013809' => 'sed', 'Sed0019556' => 'sed', 'SEGI_03570' => 'sgi', 'SEGI_07859' => 'sgi', 'SEGI_15042' => 'sgi', 'SEGI_16263' => 'sgi', 'SEGI_16552' => 'sgi', 'SEGI_24331' => 'sgi', 'SEGI_27316' => 'sgi', 'SEGI_29521' => 'sgi', 'SEGI_41342' => 'sgi', 'SGA_v2.0_scaffold27G11617' => 'sas', 'SGA_v2.0_scaffold316G48428' => 'sas', 'SGA_v2.0_scaffold49G18261' => 'sas', 'SGA_v2.0_scaffold7G03831' => 'sas', 'SGA_v2.0_scaffold93G28359' => 'sas', 'SHI02210' => 'shi', 'SHI06028' => 'shi', 'SHI06321' => 'shi', 'SMO111G0012' => 'smo', 'SMO228G0080' => 'smo', 'SMO356G0756' => 'smo', 'Solyc02g080620.3' => 'sly', 'Solyc06g074530.1' => 'sly', 'Solyc11g066890.1' => 'sly', 'Solyc11g072520.3' => 'sly', 'Sopen02g025330' => 'spe', 'Sopen06g031000' => 'spe', 'Sopen09g008240' => 'spe', 'Sopen09g025210' => 'spe', 'Sopen11g026600' => 'spe', 'Sopen11g030170' => 'spe', 'Sp1g10420' => 'spa', 'Sp3g06570' => 'spa', 'Sp4g10660' => 'spa', 'Sp5g16460' => 'spa', 'Sp6g22710' => 'spa', 'TAR365G0112' => 'tar', 'TAR369G0717' => 'tar', 'TAR374G0976' => 'tar', 'TAR623G1128' => 'tar', 'TAR626G1937' => 'tar', 'TAR627G0123' => 'tar', 'TAR628G0305' => 'tar', 'TAR636G1176' => 'tar', 'TAR636G2442' => 'tar', 'THA.LOC104800556' => 'tha', 'THA.LOC104809501' => 'tha', 'THA.LOC104815126' => 'tha', 'THA.LOC104815732' => 'tha', 'THA.LOC104823528' => 'tha', 'Thecc.02G365600' => 'tca', 'Thecc.06G222300' => 'tca', 'Thecc.09G261800' => 'tca', 'Thecc.09G291400' => 'tca', 'Thhalv10003028m.g' => 'esa', 'Thhalv10007886m.g' => 'esa', 'Thhalv10016085m.g' => 'esa', 'Thhalv10016681m.g' => 'esa', 'Thhalv10020951m.g' => 'esa', 'TPR.G15598' => 'tpr', 'TPR.G29305' => 'tpr', 'TPR.G32395' => 'tpr', 'TPR.G36998' => 'tpr', 'TPR.G4227' => 'tpr', 'TWI18G1433' => 'twi', 'TWI31G0755' => 'twi', 'TWI38G0912' => 'twi', 'TWI75G1097' => 'twi', 'TWI75G1619' => 'twi', 'TWI79G1336' => 'twi', 'unitig_0.g943' => 'ugi', 'unitig_0.g944' => 'ugi', 'unitig_22.g6646' => 'ugi', 'unitig_37.g12681' => 'ugi', 'unitig_8.g3290' => 'ugi', 'vmacro03278' => 'vma', 'vmacro12197' => 'vma', 'vmacro14478' => 'vma', 'vmacro15787' => 'vma', 'vmacro15789' => 'vma', 'vmacro15790' => 'vma', 'vmacro15806' => 'vma', 'vmacro22907' => 'vma', 'vmacro22908' => 'vma', 'vmacro22909' => 'vma', 'vmacro23108' => 'vma', 'VMungo0540G0540' => 'vmu', 'VMungo0540G2468' => 'vmu', 'VMungo1080G0390' => 'vmu', 'VMungo1080G1165' => 'vmu', 'VMungo1127G0170' => 'vmu', 'VMungo1127G2099' => 'vmu', 'VMungo1215G3013' => 'vmu', 'Zm00001eb013110' => 'zma', 'Zm00001eb084260' => 'zma', 'Zm00001eb096110' => 'zma', 'Zm00001eb217510' => 'zma', 'Zm00001eb322550' => 'zma', 'Zm00001eb390770' => 'zma', 'Zm00001eb397170' => 'zma', 'Zm00001eb404610' => 'zma', 'Zm00001eb421790' => 'zma' ), 'gf_id' => 'HOM05D000911', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000911' ), 'data_identifier' => 'HOM05D000911', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000911', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27780' => 'bna', 'A03p35380' => 'bna', 'A04p21160' => 'bna', 'A05p40570' => 'bna', 'A06p26900' => 'bna', 'A08p33230' => 'bna', 'A09p65960' => 'bna', 'A10p18290' => 'bna', 'Aa31LG1G12990' => 'aar', 'Aa31LG1G2980' => 'aar', 'Aa31LG4G14320' => 'aar', 'Aa31LG7G11800' => 'aar', 'Aa31sc36G50' => 'aar', 'Aa31sc36G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3721' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5459' => 'aag', 'Actinidia03028' => 'ach', 'Actinidia03753' => 'ach', 'Actinidia04187' => 'ach', 'Actinidia05509' => 'ach', 'Actinidia24180' => 'ach', 'Actinidia26906' => 'ach', 'Actinidia37097' => 'ach', 'Actinidia38249' => 'ach', 'Ah.01g003470' => 'amhyb', 'Ah.01g004580' => 'amhyb', 'Ah.01g014850' => 'amhyb', 'Ah.01g016830' => 'amhyb', 'Ah.14g088000' => 'amhyb', 'AL1G22980' => 'aly', 'AL3G18990' => 'aly', 'AL4G22440' => 'aly', 'AL4G33180' => 'aly', 'AL5G22920' => 'aly', 'AL6G33660' => 'aly', 'AL8G20720' => 'aly', 'Aqoxy1G00935' => 'aox', 'Aqoxy1G02094' => 'aox', 'Aqoxy2G01239' => 'aox', 'Aqoxy4G01870' => 'aox', 'Aqoxy7G00450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.36ZVTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71EM27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5D6C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH3WRE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3NCM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RIM768' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YB5YRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z36GDV' => 'arhy', 'AT1G08250' => 'ath', 'AT1G11790' => 'ath', 'AT2G27820' => 'ath', 'AT3G07630' => 'ath', 'AT3G44720' => 'ath', 'AT5G22630' => 'ath', 'ATR0693G304' => 'atr', 'ATR0794G109' => 'atr', 'ATR0820G120' => 'atr', 'ATR1159G064' => 'atr', 'Atru.chr10.2239' => 'acertr', 'Atru.chr3.3371' => 'acertr', 'Atru.chr6.3202' => 'acertr', 'AUR62006499' => 'cqu', 'AUR62012718' => 'cqu', 'AUR62021938' => 'cqu', 'AUR62023932' => 'cqu', 'AUR62025034' => 'cqu', 'AUR62025035' => 'cqu', 'AUR62038307' => 'cqu', 'AUR62043466' => 'cqu', 'BcaB02g10748' => 'bca', 'BcaB03g13231' => 'bca', 'BcaB03g14689' => 'bca', 'BcaB05g22716' => 'bca', 'BcaB06g28172' => 'bca', 'BcaB08g36413' => 'bca', 'BcaC01g02186' => 'bca', 'BcaC01g04272' => 'bca', 'BcaC02g08080' => 'bca', 'BcaC02g08227' => 'bca', 'BcaC03g13901' => 'bca', 'BcaC04g19593' => 'bca', 'BcaC04g20874' => 'bca', 'BcaC05g29557' => 'bca', 'BcaC06g35505' => 'bca', 'BcaC07g41954' => 'bca', 'BcaC07g41955' => 'bca', 'BcaC07g41956' => 'bca', 'BcaC07g42519' => 'bca', 'BcaC07g42520' => 'bca', 'BcaC07g42523' => 'bca', 'BcaC07g42524' => 'bca', 'BcaC07g42525' => 'bca', 'BcaC08g47480' => 'bca', 'BcaC08g47481' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00530' => 'bna', 'BolC2t07178H' => 'bol', 'BolC3t16567H' => 'bol', 'BolC4t27234H' => 'bol', 'BolC5t29728H' => 'bol', 'BolC5t34622H' => 'bol', 'BolC6t40321H' => 'bol', 'BolC7t42028H' => 'bol', 'BolC8t49125H' => 'bol', 'BolC8t52538H' => 'bol', 'BolC8t52539H' => 'bol', 'BolC9t56681H' => 'bol', 'BolC9t58266H' => 'bol', 'BolSC21t60294H' => 'bol', 'BraA02t05670Z' => 'bra', 'BraA03t12716Z' => 'bra', 'BraA04t17685Z' => 'bra', 'BraA05t22788Z' => 'bra', 'BraA06t24032Z' => 'bra', 'BraA06t25625Z' => 'bra', 'BraA07t27930Z' => 'bra', 'BraA08t35242Z' => 'bra', 'BraA09t38609Z' => 'bra', 'BraA10t43905Z' => 'bra', 'C02p11060' => 'bna', 'C03p42990' => 'bna', 'C03p67310' => 'bna', 'C04p56990' => 'bna', 'C04p58660' => 'bna', 'C05p09890' => 'bna', 'C05p59680' => 'bna', 'C06p19830' => 'bna', 'C06p53040' => 'bna', 'C07p15230' => 'bna', 'C08p50070' => 'bna', 'C08p50090' => 'bna', 'C09p38330' => 'bna', 'C09p53940' => 'bna', 'CAN.G1014.1' => 'can', 'CAN.G644.30' => 'can', 'CAN.G84.47' => 'can', 'CAN.G919.8' => 'can', 'CANSAT54G0113' => 'cansat', 'CANSAT54G1286' => 'cansat', 'CANSAT64G1020' => 'cansat', 'CARHR008080' => 'chi', 'CARHR008090' => 'chi', 'CARHR012130' => 'chi', 'CARHR038390' => 'chi', 'CARHR082330' => 'chi', 'CARHR120520' => 'chi', 'CARHR151470' => 'chi', 'CARHR190950' => 'chi', 'Carub.0001s0760' => 'cru', 'Carub.0001s1146' => 'cru', 'Carub.0003s0721' => 'cru', 'Carub.0004s0858' => 'cru', 'Carub.0005s1040' => 'cru', 'Carub.0006s2035' => 'cru', 'Carub.0015s0005' => 'cru', 'Ca_01607_v3' => 'car', 'Ca_01677_v3' => 'car', 'Ca_06087_v3' => 'car', 'Ca_19238_v3' => 'car', 'Ca_19373_v3' => 'car', 'Ca_21079_v3' => 'car', 'CBR_g54016' => 'cbr', 'CBR_g54018' => 'cbr', 'CBR_g54020' => 'cbr', 'Cc01_g09780' => 'ccan', 'Cc01_g11680' => 'ccan', 'Cc02_g15610' => 'ccan', 'Cc05_g04350' => 'ccan', 'Cc09_g01580' => 'ccan', 'CDE01G0795' => 'cde', 'CDE02G2024' => 'cde', 'CDE02G2260' => 'cde', 'CDE02G4561' => 'cde', 'CDE05G2733' => 'cde', 'CDE05G3422' => 'cde', 'CDE06G2003' => 'cde', 'CDE08G0576' => 'cde', 'CDE09G0048' => 'cde', 'CDE11G0805' => 'cde', 'Cfa003644' => 'cfa', 'Cfa006290' => 'cfa', 'Cfa010080' => 'cfa', 'Cfa011376' => 'cfa', 'Cfa011576' => 'cfa', 'Cfa011577' => 'cfa', 'Cfa014389' => 'cfa', 'Ciclev10006044m.g' => 'ccl', 'Ciclev10006954m.g' => 'ccl', 'Ciclev10015131m.g' => 'ccl', 'Ciclev10015580m.g' => 'ccl', 'Ciclev10028359m.g' => 'ccl', 'Ciclev10028573m.g' => 'ccl', 'CiPaw.03G159300' => 'cil', 'CiPaw.04G115100' => 'cil', 'CiPaw.09G092800' => 'cil', 'CiPaw.10G071800' => 'cil', 'CiPaw.13G105800' => 'cil', 'CiPaw.13G141000' => 'cil', 'CiPaw.14G103400' => 'cil', 'ClCG01G012700' => 'cla', 'ClCG01G012720' => 'cla', 'ClCG01G021920' => 'cla', 'ClCG02G008870' => 'cla', 'ClCG02G020840' => 'cla', 'ClCG02G021930' => 'cla', 'COL.COLO4_19302' => 'col', 'COL.COLO4_25262' => 'col', 'COL.COLO4_31788' => 'col', 'Cpa.g.c34684' => 'cpa', 'Cpa.g.c36520.1' => 'cpa', 'Cpa.g.c45626' => 'cpa', 'Cpa.g.sc121.17' => 'cpa', 'Cpa.g.sc13.22' => 'cpa', 'Cpa.g.sc87.88' => 'cpa', 'Cre06.g261800' => 'cre', 'CsaV3_1G014500' => 'csa', 'CsaV3_1G014510' => 'csa', 'CsaV3_2G034880' => 'csa', 'CsaV3_6G014760' => 'csa', 'CsaV3_6G021500' => 'csa', 'CsaV3_6G048980' => 'csa', 'CSS0002511' => 'camsi', 'CSS0007556' => 'camsi', 'CSS0008532' => 'camsi', 'CSS0009709' => 'camsi', 'CSS0010486' => 'camsi', 'CSS0016768' => 'camsi', 'CSS0023512' => 'camsi', 'CSS0025341' => 'camsi', 'CSS0027999' => 'camsi', 'CSS0028944' => 'camsi', 'CSS0032292' => 'camsi', 'CSS0032464' => 'camsi', 'CSS0037153' => 'camsi', 'CSS0039256' => 'camsi', 'CSS0048392' => 'camsi', 'CSS0050458' => 'camsi', 'DCAR_004224' => 'dca', 'DCAR_006147' => 'dca', 'DCAR_006465' => 'dca', 'DCAR_008159' => 'dca', 'DCAR_012164' => 'dca', 'DCAR_019764' => 'dca', 'Dinv05418' => 'din', 'Dinv10839' => 'din', 'Dinv12521' => 'din', 'Dinv13900' => 'din', 'Dinv29426' => 'din', 'Duzib150G0263' => 'dzi', 'Duzib168G1178' => 'dzi', 'Duzib168G1924' => 'dzi', 'Duzib170G0299' => 'dzi', 'Duzib170G0813' => 'dzi', 'Duzib235G1128' => 'dzi', 'Duzib248G1060' => 'dzi', 'ECA232G1910' => 'eca', 'ECA233G4621' => 'eca', 'ECA238G1216' => 'eca', 'ECA238G1784' => 'eca', 'ECA248G1242' => 'eca', 'EL10Ac8g20071' => 'bvu', 'EL10Ac9g21086' => 'bvu', 'EL10Ac9g22407' => 'bvu', 'EL10Ac9g22412' => 'bvu', 'Eucgr.A01119' => 'egr', 'Eucgr.E04043' => 'egr', 'Eucgr.J00428' => 'egr', 'Eucgr.J00958' => 'egr', 'FAN11G3091' => 'fan', 'FAN11G3651' => 'fan', 'FAN16G2566' => 'fan', 'FAN21G3155' => 'fan', 'FAN21G3400' => 'fan', 'FAN21G3543' => 'fan', 'FAN25G0234' => 'fan', 'FAN25G1422' => 'fan', 'FAN25G3392' => 'fan', 'FvH4_3g01940' => 'fve', 'FvH4_3g29870' => 'fve', 'FvH4_3g33680' => 'fve', 'Glyma.09G004200' => 'gma', 'Glyma.11G151288' => 'gma', 'Glyma.11G189100' => 'gma', 'Glyma.12G072500' => 'gma', 'Glyma.12G085500' => 'gma', 'Glyma.12G181800' => 'gma', 'Glyma.12G193000' => 'gma', 'Glyma.13G309300' => 'gma', 'Glyma.13G319000' => 'gma', 'Glyma.17G012600' => 'gma', 'Gohir.A06G148600' => 'ghi', 'Gohir.A07G115800' => 'ghi', 'Gohir.A08G003600' => 'ghi', 'Gohir.A09G093300' => 'ghi', 'Gohir.A09G105400' => 'ghi', 'Gohir.A09G105500' => 'ghi', 'Gohir.D06G154600' => 'ghi', 'Gohir.D07G120200' => 'ghi', 'Gohir.D08G013900' => 'ghi', 'Gohir.D09G093100' => 'ghi', 'Gohir.D09G102200' => 'ghi', 'Gohir.D09G102300' => 'ghi', 'Gorai.001G129400' => 'gra', 'Gorai.004G008200' => 'gra', 'Gorai.006G109800' => 'gra', 'Gorai.006G119500' => 'gra', 'Gorai.006G121300' => 'gra', 'Gorai.010G180700' => 'gra', 'GSVIVG01012716001' => 'vvi', 'GSVIVG01025118001' => 'vvi', 'GSVIVG01030439001' => 'vvi', 'GSVIVG01031397001' => 'vvi', 'HanXRQChr01g0004201' => 'han', 'HanXRQChr02g0054941' => 'han', 'HanXRQChr05g0141811' => 'han', 'HanXRQChr07g0197751' => 'han', 'HanXRQChr11g0346691' => 'han', 'HanXRQChr13g0396971' => 'han', 'HanXRQChr14g0432951' => 'han', 'HanXRQChr14g0452001' => 'han', 'HanXRQChr15g0496681' => 'han', 'HanXRQChr17g0557491' => 'han', 'HanXRQChr17g0557501' => 'han', 'Haze_06809' => 'cav', 'Haze_12852' => 'cav', 'Haze_15850' => 'cav', 'Haze_23446' => 'cav', 'Haze_23942' => 'cav', 'Haze_23943' => 'cav', 'Hma1.2p1_0091F.1_g046450' => 'hma', 'Hma1.2p1_0128F.1_g059910' => 'hma', 'Hma1.2p1_0249F.1_g102260' => 'hma', 'Hma1.2p1_0453F.1_g156190' => 'hma', 'Hma1.2p1_0695F.1_g204380' => 'hma', 'Hma1.2p1_0749F.1_g212650' => 'hma', 'Hma1.2p1_2156F.1_g315420' => 'hma', 'Hma1.2p1_2686F.1_g326940' => 'hma', 'HPP92_006428' => 'vpl', 'HPP92_012069' => 'vpl', 'HPP92_014129' => 'vpl', 'HPP92_014133' => 'vpl', 'HPP92_017315' => 'vpl', 'HPP92_026445' => 'vpl', 'HPP92_026446' => 'vpl', 'Hund00774' => 'sun', 'Hund07682' => 'sun', 'Hund21413' => 'sun', 'Hund23462' => 'sun', 'Hund23463' => 'sun', 'Lalb_Chr03g0027911' => 'lal', 'Lalb_Chr13g0304271' => 'lal', 'Lalb_Chr19g0137471' => 'lal', 'Lalb_Chr22g0350651' => 'lal', 'Lalb_Chr24g0395151' => 'lal', 'Lj1A1231T40' => 'lonja', 'Lj1A221T48' => 'lonja', 'Lj1C924T12' => 'lonja', 'Lj2C993G6' => 'lonja', 'Lj3g0005790' => 'lja', 'Lj3g0015432' => 'lja', 'Lj3g0017722' => 'lja', 'Lj3g0018497' => 'lja', 'Lj4g0025071' => 'lja', 'Lsat_1_v5_gn_1_129680' => 'lsa', 'Lsat_1_v5_gn_2_25321' => 'lsa', 'Lsat_1_v5_gn_2_95461' => 'lsa', 'Lsat_1_v5_gn_4_159620' => 'lsa', 'Lsat_1_v5_gn_6_41301' => 'lsa', 'Lsat_1_v5_gn_6_74660' => 'lsa', 'Lsat_1_v5_gn_7_11520' => 'lsa', 'Lsat_1_v5_gn_9_67680' => 'lsa', 'Manes.04G008300' => 'mes', 'Manes.04G008400' => 'mes', 'Manes.04G026500' => 'mes', 'Manes.10G135300' => 'mes', 'Manes.11G157300' => 'mes', 'Manes.12G074000' => 'mes', 'Manes.16G006200' => 'mes', 'Manes.17G026400' => 'mes', 'Mapoly0024s0086' => 'mpo', 'Mapoly0024s0087' => 'mpo', 'Mapoly0071s0057' => 'mpo', 'Mapoly0204s0012' => 'mpo', 'MBI04_g37681_MAGBIO' => 'mbi', 'MBI05_g17779_MAGBIO' => 'mbi', 'MBI12_g31184_MAGBIO' => 'mbi', 'MBI17_g11083_MAGBIO' => 'mbi', 'MBI18_g03883_MAGBIO' => 'mbi', 'MBI18_g28940_MAGBIO' => 'mbi', 'MCO01G690' => 'mco', 'MD03G1109900' => 'mdo', 'MD03G1134800' => 'mdo', 'MD05G1348000' => 'mdo', 'MD10G1322400' => 'mdo', 'MD11G1123300' => 'mdo', 'MD11G1157600' => 'mdo', 'Medtr2g084875' => 'mtr', 'Medtr2g088130' => 'mtr', 'Medtr4g055310' => 'mtr', 'Medtr4g061070' => 'mtr', 'Medtr4g132250' => 'mtr', 'MELO3C004795.2' => 'cme', 'MELO3C004797.2' => 'cme', 'MELO3C007396.2' => 'cme', 'MELO3C019277.2' => 'cme', 'MELO3C021449.2' => 'cme', 'MELO3C025736.2' => 'cme', 'Migut.D02175' => 'egut', 'Migut.H01573' => 'egut', 'Migut.M01327' => 'egut', 'Migut.N02513' => 'egut', 'MSTRG.14638' => 'ama', 'MSTRG.18632' => 'ama', 'MSTRG.7203' => 'ama', 'Nitab4.5_0000533g0140' => 'nta', 'Nitab4.5_0000888g0150' => 'nta', 'Nitab4.5_0001453g0040' => 'nta', 'Nitab4.5_0002827g0090' => 'nta', 'Nitab4.5_0003082g0040' => 'nta', 'Nitab4.5_0007799g0040' => 'nta', 'Nitab4.5_0008983g0010' => 'nta', 'Nitab4.5_0009017g0020' => 'nta', 'Nn1g02132' => 'nnu', 'Nn1g03492' => 'nnu', 'Nn1g03493' => 'nnu', 'Nn1g03494' => 'nnu', 'Nn1g07164' => 'nnu', 'Nn1g07291' => 'nnu', 'Nn2g10655' => 'nnu', 'Nn2g11652' => 'nnu', 'Nn2g14008' => 'nnu', 'Nn3g17476' => 'nnu', 'Nn3g17477' => 'nnu', 'Nn4g22370' => 'nnu', 'Nn4g25255' => 'nnu', 'Nn5g27755' => 'nnu', 'Nn6g34260' => 'nnu', 'Nn6g35041' => 'nnu', 'Oeu005924.1' => 'oeu', 'Oeu008383.1' => 'oeu', 'Oeu014928.1' => 'oeu', 'Oeu019889.1' => 'oeu', 'Oeu022271.1' => 'oeu', 'Oeu025271.1' => 'oeu', 'Oeu036302.1' => 'oeu', 'Oeu044100.1' => 'oeu', 'Os01g0528300' => 'osa', 'Os03g0286200' => 'osa', 'Os04g0406600' => 'osa', 'Os07g0512000' => 'osa', 'Os07g0694600' => 'osa', 'Os08g0411000' => 'osa', 'Os09g0565700' => 'osa', 'Os09g0566050' => 'osa', 'Os10g0523700' => 'osa', 'Peaxi162Scf00002g00514' => 'pax', 'Peaxi162Scf00047g01817' => 'pax', 'Peaxi162Scf00114g00001' => 'pax', 'Peaxi162Scf00147g00613' => 'pax', 'Peaxi162Scf00389g00425' => 'pax', 'PGR042G1139' => 'pgr', 'PGR042G3273' => 'pgr', 'PGR102G2180' => 'pgr', 'PGR119G0234' => 'pgr', 'PGR119G0668' => 'pgr', 'PGSC0003DMG400007122' => 'stu', 'PGSC0003DMG400016478' => 'stu', 'PGSC0003DMG400025374' => 'stu', 'PGSC0003DMG400026536' => 'stu', 'Phvul.003G079600' => 'pvu', 'Phvul.005G115600' => 'pvu', 'Phvul.005G127100' => 'pvu', 'Phvul.006G149500' => 'pvu', 'Phvul.006G149600' => 'pvu', 'Phvul.011G071800' => 'pvu', 'Phvul.011G090400' => 'pvu', 'Potri.004G013400' => 'ptr', 'Potri.004G188100' => 'ptr', 'Potri.008G195500' => 'ptr', 'Potri.009G148800' => 'ptr', 'Potri.011G004700' => 'ptr', 'Pp3c17_22810' => 'ppa', 'Pp3c18_4480' => 'ppa', 'Pp3c19_13030' => 'ppa', 'Pp3c1_33620' => 'ppa', 'Pp3c2_9380' => 'ppa', 'PRCOL_00001023' => 'pco', 'Prupe.3G216300' => 'ppe', 'Prupe.4G019500' => 'ppe', 'Prupe.6G092500' => 'ppe', 'Prupe.6G119200' => 'ppe', 'Psat0s1945g0080' => 'psa', 'Psat0s4167g0040' => 'psa', 'Psat1g185800' => 'psa', 'Psat4g006440' => 'psa', 'Psat4g006480' => 'psa', 'Psat4g168120' => 'psa', 'Psat5g255680' => 'psa', 'Psat5g261760' => 'psa', 'Psat7g222120' => 'psa', 'PSO063G7252' => 'pso', 'PSO170G4778' => 'pso', 'PSO210G2249' => 'pso', 'PSO339G2411' => 'pso', 'PSO339G2457' => 'pso', 'PSO339G2854' => 'pso', 'PSO339G4288' => 'pso', 'PSO339G4615' => 'pso', 'PSO384G2796' => 'pso', 'PSO384G2940' => 'pso', 'PSO384G4227' => 'pso', 'PSO478G1425' => 'pso', 'PSO541G3863' => 'pso', 'PSO675G0507' => 'pso', 'PSO782G0338' => 'pso', 'PSO832G0644' => 'pso', 'QL01p013664' => 'qlo', 'QL01p036598' => 'qlo', 'QL05p072984' => 'qlo', 'QL08p005768' => 'qlo', 'QL08p032743' => 'qlo', 'QL93p0073_0439' => 'qlo', 'QL93p0073_0444' => 'qlo', 'RcHm_v2.0_Chr5g0002851' => 'rch', 'RcHm_v2.0_Chr5g0055201' => 'rch', 'RcHm_v2.0_Chr5g0061191' => 'rch', 'RcHm_v2.0_Chr7g0203231' => 'rch', 'Rhsim01G0208100' => 'rsi', 'Rhsim01G0208200' => 'rsi', 'Rhsim02G0106500' => 'rsi', 'Rhsim03G0107900' => 'rsi', 'Rhsim06G0163400' => 'rsi', 'Rhsim13G0105200' => 'rsi', 'Sabra04G0006300' => 'sbr', 'Sabra04G0127000' => 'sbr', 'Sabra08G0148700' => 'sbr', 'Sabra09G0117400' => 'sbr', 'SalBow1G3326' => 'sbo', 'SalBow3G3228' => 'sbo', 'SalBow6G1634' => 'sbo', 'SalBow6G3603' => 'sbo', 'SalBow6G5266' => 'sbo', 'SalBow7G2265' => 'sbo', 'SalBow8G0850' => 'sbo', 'SalBow8G2592' => 'sbo', 'Sc05g0009240' => 'sci', 'Sc12g0002300' => 'sci', 'Sc21g0000100' => 'sci', 'Sc21g0004720' => 'sci', 'Sed0002949' => 'sed', 'Sed0004114' => 'sed', 'Sed0004306' => 'sed', 'Sed0006172' => 'sed', 'Sed0008413' => 'sed', 'Sed0013809' => 'sed', 'Sed0019556' => 'sed', 'SEGI_03570' => 'sgi', 'SEGI_07859' => 'sgi', 'SEGI_15042' => 'sgi', 'SEGI_16263' => 'sgi', 'SEGI_16552' => 'sgi', 'SEGI_24331' => 'sgi', 'SEGI_27316' => 'sgi', 'SEGI_29521' => 'sgi', 'SEGI_41342' => 'sgi', 'SGA_v2.0_scaffold27G11617' => 'sas', 'SGA_v2.0_scaffold316G48428' => 'sas', 'SGA_v2.0_scaffold49G18261' => 'sas', 'SGA_v2.0_scaffold7G03831' => 'sas', 'SGA_v2.0_scaffold93G28359' => 'sas', 'SHI02210' => 'shi', 'SHI06028' => 'shi', 'SHI06321' => 'shi', 'SMO111G0012' => 'smo', 'SMO228G0080' => 'smo', 'SMO356G0756' => 'smo', 'Solyc02g080620.3' => 'sly', 'Solyc06g074530.1' => 'sly', 'Solyc11g066890.1' => 'sly', 'Solyc11g072520.3' => 'sly', 'Sopen02g025330' => 'spe', 'Sopen06g031000' => 'spe', 'Sopen09g008240' => 'spe', 'Sopen09g025210' => 'spe', 'Sopen11g026600' => 'spe', 'Sopen11g030170' => 'spe', 'Sp1g10420' => 'spa', 'Sp3g06570' => 'spa', 'Sp4g10660' => 'spa', 'Sp5g16460' => 'spa', 'Sp6g22710' => 'spa', 'TAR365G0112' => 'tar', 'TAR369G0717' => 'tar', 'TAR374G0976' => 'tar', 'TAR623G1128' => 'tar', 'TAR626G1937' => 'tar', 'TAR627G0123' => 'tar', 'TAR628G0305' => 'tar', 'TAR636G1176' => 'tar', 'TAR636G2442' => 'tar', 'THA.LOC104800556' => 'tha', 'THA.LOC104809501' => 'tha', 'THA.LOC104815126' => 'tha', 'THA.LOC104815732' => 'tha', 'THA.LOC104823528' => 'tha', 'Thecc.02G365600' => 'tca', 'Thecc.06G222300' => 'tca', 'Thecc.09G261800' => 'tca', 'Thecc.09G291400' => 'tca', 'Thhalv10003028m.g' => 'esa', 'Thhalv10007886m.g' => 'esa', 'Thhalv10016085m.g' => 'esa', 'Thhalv10016681m.g' => 'esa', 'Thhalv10020951m.g' => 'esa', 'TPR.G15598' => 'tpr', 'TPR.G29305' => 'tpr', 'TPR.G32395' => 'tpr', 'TPR.G36998' => 'tpr', 'TPR.G4227' => 'tpr', 'TWI18G1433' => 'twi', 'TWI31G0755' => 'twi', 'TWI38G0912' => 'twi', 'TWI75G1097' => 'twi', 'TWI75G1619' => 'twi', 'TWI79G1336' => 'twi', 'unitig_0.g943' => 'ugi', 'unitig_0.g944' => 'ugi', 'unitig_22.g6646' => 'ugi', 'unitig_37.g12681' => 'ugi', 'unitig_8.g3290' => 'ugi', 'vmacro03278' => 'vma', 'vmacro12197' => 'vma', 'vmacro14478' => 'vma', 'vmacro15787' => 'vma', 'vmacro15789' => 'vma', 'vmacro15790' => 'vma', 'vmacro15806' => 'vma', 'vmacro22907' => 'vma', 'vmacro22908' => 'vma', 'vmacro22909' => 'vma', 'vmacro23108' => 'vma', 'VMungo0540G0540' => 'vmu', 'VMungo0540G2468' => 'vmu', 'VMungo1080G0390' => 'vmu', 'VMungo1080G1165' => 'vmu', 'VMungo1127G0170' => 'vmu', 'VMungo1127G2099' => 'vmu', 'VMungo1215G3013' => 'vmu', 'Zm00001eb013110' => 'zma', 'Zm00001eb084260' => 'zma', 'Zm00001eb096110' => 'zma', 'Zm00001eb217510' => 'zma', 'Zm00001eb322550' => 'zma', 'Zm00001eb390770' => 'zma', 'Zm00001eb397170' => 'zma', 'Zm00001eb404610' => 'zma', 'Zm00001eb421790' => 'zma' ) $gf_id = 'HOM05D000911' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000911' ) $data_identifier = 'HOM05D000911' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 16, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 5, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 6, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 8, 'nnu' => (int) 16, 'oeu' => (int) 8, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 5, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 16, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421790' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000911', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27780' => 'bna', 'A03p35380' => 'bna', 'A04p21160' => 'bna', 'A05p40570' => 'bna', 'A06p26900' => 'bna', 'A08p33230' => 'bna', 'A09p65960' => 'bna', 'A10p18290' => 'bna', 'Aa31LG1G12990' => 'aar', 'Aa31LG1G2980' => 'aar', 'Aa31LG4G14320' => 'aar', 'Aa31LG7G11800' => 'aar', 'Aa31sc36G50' => 'aar', 'Aa31sc36G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3721' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5459' => 'aag', 'Actinidia03028' => 'ach', 'Actinidia03753' => 'ach', 'Actinidia04187' => 'ach', 'Actinidia05509' => 'ach', 'Actinidia24180' => 'ach', 'Actinidia26906' => 'ach', 'Actinidia37097' => 'ach', 'Actinidia38249' => 'ach', 'Ah.01g003470' => 'amhyb', 'Ah.01g004580' => 'amhyb', 'Ah.01g014850' => 'amhyb', 'Ah.01g016830' => 'amhyb', 'Ah.14g088000' => 'amhyb', 'AL1G22980' => 'aly', 'AL3G18990' => 'aly', 'AL4G22440' => 'aly', 'AL4G33180' => 'aly', 'AL5G22920' => 'aly', 'AL6G33660' => 'aly', 'AL8G20720' => 'aly', 'Aqoxy1G00935' => 'aox', 'Aqoxy1G02094' => 'aox', 'Aqoxy2G01239' => 'aox', 'Aqoxy4G01870' => 'aox', 'Aqoxy7G00450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.36ZVTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71EM27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5D6C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH3WRE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3NCM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RIM768' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YB5YRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z36GDV' => 'arhy', 'AT1G08250' => 'ath', 'AT1G11790' => 'ath', 'AT2G27820' => 'ath', 'AT3G07630' => 'ath', 'AT3G44720' => 'ath', 'AT5G22630' => 'ath', 'ATR0693G304' => 'atr', 'ATR0794G109' => 'atr', 'ATR0820G120' => 'atr', 'ATR1159G064' => 'atr', 'Atru.chr10.2239' => 'acertr', 'Atru.chr3.3371' => 'acertr', 'Atru.chr6.3202' => 'acertr', 'AUR62006499' => 'cqu', 'AUR62012718' => 'cqu', 'AUR62021938' => 'cqu', 'AUR62023932' => 'cqu', 'AUR62025034' => 'cqu', 'AUR62025035' => 'cqu', 'AUR62038307' => 'cqu', 'AUR62043466' => 'cqu', 'BcaB02g10748' => 'bca', 'BcaB03g13231' => 'bca', 'BcaB03g14689' => 'bca', 'BcaB05g22716' => 'bca', 'BcaB06g28172' => 'bca', 'BcaB08g36413' => 'bca', 'BcaC01g02186' => 'bca', 'BcaC01g04272' => 'bca', 'BcaC02g08080' => 'bca', 'BcaC02g08227' => 'bca', 'BcaC03g13901' => 'bca', 'BcaC04g19593' => 'bca', 'BcaC04g20874' => 'bca', 'BcaC05g29557' => 'bca', 'BcaC06g35505' => 'bca', 'BcaC07g41954' => 'bca', 'BcaC07g41955' => 'bca', 'BcaC07g41956' => 'bca', 'BcaC07g42519' => 'bca', 'BcaC07g42520' => 'bca', 'BcaC07g42523' => 'bca', 'BcaC07g42524' => 'bca', 'BcaC07g42525' => 'bca', 'BcaC08g47480' => 'bca', 'BcaC08g47481' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00530' => 'bna', 'BolC2t07178H' => 'bol', 'BolC3t16567H' => 'bol', 'BolC4t27234H' => 'bol', 'BolC5t29728H' => 'bol', 'BolC5t34622H' => 'bol', 'BolC6t40321H' => 'bol', 'BolC7t42028H' => 'bol', 'BolC8t49125H' => 'bol', 'BolC8t52538H' => 'bol', 'BolC8t52539H' => 'bol', 'BolC9t56681H' => 'bol', 'BolC9t58266H' => 'bol', 'BolSC21t60294H' => 'bol', 'BraA02t05670Z' => 'bra', 'BraA03t12716Z' => 'bra', 'BraA04t17685Z' => 'bra', 'BraA05t22788Z' => 'bra', 'BraA06t24032Z' => 'bra', 'BraA06t25625Z' => 'bra', 'BraA07t27930Z' => 'bra', 'BraA08t35242Z' => 'bra', 'BraA09t38609Z' => 'bra', 'BraA10t43905Z' => 'bra', 'C02p11060' => 'bna', 'C03p42990' => 'bna', 'C03p67310' => 'bna', 'C04p56990' => 'bna', 'C04p58660' => 'bna', 'C05p09890' => 'bna', 'C05p59680' => 'bna', 'C06p19830' => 'bna', 'C06p53040' => 'bna', 'C07p15230' => 'bna', 'C08p50070' => 'bna', 'C08p50090' => 'bna', 'C09p38330' => 'bna', 'C09p53940' => 'bna', 'CAN.G1014.1' => 'can', 'CAN.G644.30' => 'can', 'CAN.G84.47' => 'can', 'CAN.G919.8' => 'can', 'CANSAT54G0113' => 'cansat', 'CANSAT54G1286' => 'cansat', 'CANSAT64G1020' => 'cansat', 'CARHR008080' => 'chi', 'CARHR008090' => 'chi', 'CARHR012130' => 'chi', 'CARHR038390' => 'chi', 'CARHR082330' => 'chi', 'CARHR120520' => 'chi', 'CARHR151470' => 'chi', 'CARHR190950' => 'chi', 'Carub.0001s0760' => 'cru', 'Carub.0001s1146' => 'cru', 'Carub.0003s0721' => 'cru', 'Carub.0004s0858' => 'cru', 'Carub.0005s1040' => 'cru', 'Carub.0006s2035' => 'cru', 'Carub.0015s0005' => 'cru', 'Ca_01607_v3' => 'car', 'Ca_01677_v3' => 'car', 'Ca_06087_v3' => 'car', 'Ca_19238_v3' => 'car', 'Ca_19373_v3' => 'car', 'Ca_21079_v3' => 'car', 'CBR_g54016' => 'cbr', 'CBR_g54018' => 'cbr', 'CBR_g54020' => 'cbr', 'Cc01_g09780' => 'ccan', 'Cc01_g11680' => 'ccan', 'Cc02_g15610' => 'ccan', 'Cc05_g04350' => 'ccan', 'Cc09_g01580' => 'ccan', 'CDE01G0795' => 'cde', 'CDE02G2024' => 'cde', 'CDE02G2260' => 'cde', 'CDE02G4561' => 'cde', 'CDE05G2733' => 'cde', 'CDE05G3422' => 'cde', 'CDE06G2003' => 'cde', 'CDE08G0576' => 'cde', 'CDE09G0048' => 'cde', 'CDE11G0805' => 'cde', 'Cfa003644' => 'cfa', 'Cfa006290' => 'cfa', 'Cfa010080' => 'cfa', 'Cfa011376' => 'cfa', 'Cfa011576' => 'cfa', 'Cfa011577' => 'cfa', 'Cfa014389' => 'cfa', 'Ciclev10006044m.g' => 'ccl', 'Ciclev10006954m.g' => 'ccl', 'Ciclev10015131m.g' => 'ccl', 'Ciclev10015580m.g' => 'ccl', 'Ciclev10028359m.g' => 'ccl', 'Ciclev10028573m.g' => 'ccl', 'CiPaw.03G159300' => 'cil', 'CiPaw.04G115100' => 'cil', 'CiPaw.09G092800' => 'cil', 'CiPaw.10G071800' => 'cil', 'CiPaw.13G105800' => 'cil', 'CiPaw.13G141000' => 'cil', 'CiPaw.14G103400' => 'cil', 'ClCG01G012700' => 'cla', 'ClCG01G012720' => 'cla', 'ClCG01G021920' => 'cla', 'ClCG02G008870' => 'cla', 'ClCG02G020840' => 'cla', 'ClCG02G021930' => 'cla', 'COL.COLO4_19302' => 'col', 'COL.COLO4_25262' => 'col', 'COL.COLO4_31788' => 'col', 'Cpa.g.c34684' => 'cpa', 'Cpa.g.c36520.1' => 'cpa', 'Cpa.g.c45626' => 'cpa', 'Cpa.g.sc121.17' => 'cpa', 'Cpa.g.sc13.22' => 'cpa', 'Cpa.g.sc87.88' => 'cpa', 'Cre06.g261800' => 'cre', 'CsaV3_1G014500' => 'csa', 'CsaV3_1G014510' => 'csa', 'CsaV3_2G034880' => 'csa', 'CsaV3_6G014760' => 'csa', 'CsaV3_6G021500' => 'csa', 'CsaV3_6G048980' => 'csa', 'CSS0002511' => 'camsi', 'CSS0007556' => 'camsi', 'CSS0008532' => 'camsi', 'CSS0009709' => 'camsi', 'CSS0010486' => 'camsi', 'CSS0016768' => 'camsi', 'CSS0023512' => 'camsi', 'CSS0025341' => 'camsi', 'CSS0027999' => 'camsi', 'CSS0028944' => 'camsi', 'CSS0032292' => 'camsi', 'CSS0032464' => 'camsi', 'CSS0037153' => 'camsi', 'CSS0039256' => 'camsi', 'CSS0048392' => 'camsi', 'CSS0050458' => 'camsi', 'DCAR_004224' => 'dca', 'DCAR_006147' => 'dca', 'DCAR_006465' => 'dca', 'DCAR_008159' => 'dca', 'DCAR_012164' => 'dca', 'DCAR_019764' => 'dca', 'Dinv05418' => 'din', 'Dinv10839' => 'din', 'Dinv12521' => 'din', 'Dinv13900' => 'din', 'Dinv29426' => 'din', 'Duzib150G0263' => 'dzi', 'Duzib168G1178' => 'dzi', 'Duzib168G1924' => 'dzi', 'Duzib170G0299' => 'dzi', 'Duzib170G0813' => 'dzi', 'Duzib235G1128' => 'dzi', 'Duzib248G1060' => 'dzi', 'ECA232G1910' => 'eca', 'ECA233G4621' => 'eca', 'ECA238G1216' => 'eca', 'ECA238G1784' => 'eca', 'ECA248G1242' => 'eca', 'EL10Ac8g20071' => 'bvu', 'EL10Ac9g21086' => 'bvu', 'EL10Ac9g22407' => 'bvu', 'EL10Ac9g22412' => 'bvu', 'Eucgr.A01119' => 'egr', 'Eucgr.E04043' => 'egr', 'Eucgr.J00428' => 'egr', 'Eucgr.J00958' => 'egr', 'FAN11G3091' => 'fan', 'FAN11G3651' => 'fan', 'FAN16G2566' => 'fan', 'FAN21G3155' => 'fan', 'FAN21G3400' => 'fan', 'FAN21G3543' => 'fan', 'FAN25G0234' => 'fan', 'FAN25G1422' => 'fan', 'FAN25G3392' => 'fan', 'FvH4_3g01940' => 'fve', 'FvH4_3g29870' => 'fve', 'FvH4_3g33680' => 'fve', 'Glyma.09G004200' => 'gma', 'Glyma.11G151288' => 'gma', 'Glyma.11G189100' => 'gma', 'Glyma.12G072500' => 'gma', 'Glyma.12G085500' => 'gma', 'Glyma.12G181800' => 'gma', 'Glyma.12G193000' => 'gma', 'Glyma.13G309300' => 'gma', 'Glyma.13G319000' => 'gma', 'Glyma.17G012600' => 'gma', 'Gohir.A06G148600' => 'ghi', 'Gohir.A07G115800' => 'ghi', 'Gohir.A08G003600' => 'ghi', 'Gohir.A09G093300' => 'ghi', 'Gohir.A09G105400' => 'ghi', 'Gohir.A09G105500' => 'ghi', 'Gohir.D06G154600' => 'ghi', 'Gohir.D07G120200' => 'ghi', 'Gohir.D08G013900' => 'ghi', 'Gohir.D09G093100' => 'ghi', 'Gohir.D09G102200' => 'ghi', 'Gohir.D09G102300' => 'ghi', 'Gorai.001G129400' => 'gra', 'Gorai.004G008200' => 'gra', 'Gorai.006G109800' => 'gra', 'Gorai.006G119500' => 'gra', 'Gorai.006G121300' => 'gra', 'Gorai.010G180700' => 'gra', 'GSVIVG01012716001' => 'vvi', 'GSVIVG01025118001' => 'vvi', 'GSVIVG01030439001' => 'vvi', 'GSVIVG01031397001' => 'vvi', 'HanXRQChr01g0004201' => 'han', 'HanXRQChr02g0054941' => 'han', 'HanXRQChr05g0141811' => 'han', 'HanXRQChr07g0197751' => 'han', 'HanXRQChr11g0346691' => 'han', 'HanXRQChr13g0396971' => 'han', 'HanXRQChr14g0432951' => 'han', 'HanXRQChr14g0452001' => 'han', 'HanXRQChr15g0496681' => 'han', 'HanXRQChr17g0557491' => 'han', 'HanXRQChr17g0557501' => 'han', 'Haze_06809' => 'cav', 'Haze_12852' => 'cav', 'Haze_15850' => 'cav', 'Haze_23446' => 'cav', 'Haze_23942' => 'cav', 'Haze_23943' => 'cav', 'Hma1.2p1_0091F.1_g046450' => 'hma', 'Hma1.2p1_0128F.1_g059910' => 'hma', 'Hma1.2p1_0249F.1_g102260' => 'hma', 'Hma1.2p1_0453F.1_g156190' => 'hma', 'Hma1.2p1_0695F.1_g204380' => 'hma', 'Hma1.2p1_0749F.1_g212650' => 'hma', 'Hma1.2p1_2156F.1_g315420' => 'hma', 'Hma1.2p1_2686F.1_g326940' => 'hma', 'HPP92_006428' => 'vpl', 'HPP92_012069' => 'vpl', 'HPP92_014129' => 'vpl', 'HPP92_014133' => 'vpl', 'HPP92_017315' => 'vpl', 'HPP92_026445' => 'vpl', 'HPP92_026446' => 'vpl', 'Hund00774' => 'sun', 'Hund07682' => 'sun', 'Hund21413' => 'sun', 'Hund23462' => 'sun', 'Hund23463' => 'sun', 'Lalb_Chr03g0027911' => 'lal', 'Lalb_Chr13g0304271' => 'lal', 'Lalb_Chr19g0137471' => 'lal', 'Lalb_Chr22g0350651' => 'lal', 'Lalb_Chr24g0395151' => 'lal', 'Lj1A1231T40' => 'lonja', 'Lj1A221T48' => 'lonja', 'Lj1C924T12' => 'lonja', 'Lj2C993G6' => 'lonja', 'Lj3g0005790' => 'lja', 'Lj3g0015432' => 'lja', 'Lj3g0017722' => 'lja', 'Lj3g0018497' => 'lja', 'Lj4g0025071' => 'lja', 'Lsat_1_v5_gn_1_129680' => 'lsa', 'Lsat_1_v5_gn_2_25321' => 'lsa', 'Lsat_1_v5_gn_2_95461' => 'lsa', 'Lsat_1_v5_gn_4_159620' => 'lsa', 'Lsat_1_v5_gn_6_41301' => 'lsa', 'Lsat_1_v5_gn_6_74660' => 'lsa', 'Lsat_1_v5_gn_7_11520' => 'lsa', 'Lsat_1_v5_gn_9_67680' => 'lsa', 'Manes.04G008300' => 'mes', 'Manes.04G008400' => 'mes', 'Manes.04G026500' => 'mes', 'Manes.10G135300' => 'mes', 'Manes.11G157300' => 'mes', 'Manes.12G074000' => 'mes', 'Manes.16G006200' => 'mes', 'Manes.17G026400' => 'mes', 'Mapoly0024s0086' => 'mpo', 'Mapoly0024s0087' => 'mpo', 'Mapoly0071s0057' => 'mpo', 'Mapoly0204s0012' => 'mpo', 'MBI04_g37681_MAGBIO' => 'mbi', 'MBI05_g17779_MAGBIO' => 'mbi', 'MBI12_g31184_MAGBIO' => 'mbi', 'MBI17_g11083_MAGBIO' => 'mbi', 'MBI18_g03883_MAGBIO' => 'mbi', 'MBI18_g28940_MAGBIO' => 'mbi', 'MCO01G690' => 'mco', 'MD03G1109900' => 'mdo', 'MD03G1134800' => 'mdo', 'MD05G1348000' => 'mdo', 'MD10G1322400' => 'mdo', 'MD11G1123300' => 'mdo', 'MD11G1157600' => 'mdo', 'Medtr2g084875' => 'mtr', 'Medtr2g088130' => 'mtr', 'Medtr4g055310' => 'mtr', 'Medtr4g061070' => 'mtr', 'Medtr4g132250' => 'mtr', 'MELO3C004795.2' => 'cme', 'MELO3C004797.2' => 'cme', 'MELO3C007396.2' => 'cme', 'MELO3C019277.2' => 'cme', 'MELO3C021449.2' => 'cme', 'MELO3C025736.2' => 'cme', 'Migut.D02175' => 'egut', 'Migut.H01573' => 'egut', 'Migut.M01327' => 'egut', 'Migut.N02513' => 'egut', 'MSTRG.14638' => 'ama', 'MSTRG.18632' => 'ama', 'MSTRG.7203' => 'ama', 'Nitab4.5_0000533g0140' => 'nta', 'Nitab4.5_0000888g0150' => 'nta', 'Nitab4.5_0001453g0040' => 'nta', 'Nitab4.5_0002827g0090' => 'nta', 'Nitab4.5_0003082g0040' => 'nta', 'Nitab4.5_0007799g0040' => 'nta', 'Nitab4.5_0008983g0010' => 'nta', 'Nitab4.5_0009017g0020' => 'nta', 'Nn1g02132' => 'nnu', 'Nn1g03492' => 'nnu', 'Nn1g03493' => 'nnu', 'Nn1g03494' => 'nnu', 'Nn1g07164' => 'nnu', 'Nn1g07291' => 'nnu', 'Nn2g10655' => 'nnu', 'Nn2g11652' => 'nnu', 'Nn2g14008' => 'nnu', 'Nn3g17476' => 'nnu', 'Nn3g17477' => 'nnu', 'Nn4g22370' => 'nnu', 'Nn4g25255' => 'nnu', 'Nn5g27755' => 'nnu', 'Nn6g34260' => 'nnu', 'Nn6g35041' => 'nnu', 'Oeu005924.1' => 'oeu', 'Oeu008383.1' => 'oeu', 'Oeu014928.1' => 'oeu', 'Oeu019889.1' => 'oeu', 'Oeu022271.1' => 'oeu', 'Oeu025271.1' => 'oeu', 'Oeu036302.1' => 'oeu', 'Oeu044100.1' => 'oeu', 'Os01g0528300' => 'osa', 'Os03g0286200' => 'osa', 'Os04g0406600' => 'osa', 'Os07g0512000' => 'osa', 'Os07g0694600' => 'osa', 'Os08g0411000' => 'osa', 'Os09g0565700' => 'osa', 'Os09g0566050' => 'osa', 'Os10g0523700' => 'osa', 'Peaxi162Scf00002g00514' => 'pax', 'Peaxi162Scf00047g01817' => 'pax', 'Peaxi162Scf00114g00001' => 'pax', 'Peaxi162Scf00147g00613' => 'pax', 'Peaxi162Scf00389g00425' => 'pax', 'PGR042G1139' => 'pgr', 'PGR042G3273' => 'pgr', 'PGR102G2180' => 'pgr', 'PGR119G0234' => 'pgr', 'PGR119G0668' => 'pgr', 'PGSC0003DMG400007122' => 'stu', 'PGSC0003DMG400016478' => 'stu', 'PGSC0003DMG400025374' => 'stu', 'PGSC0003DMG400026536' => 'stu', 'Phvul.003G079600' => 'pvu', 'Phvul.005G115600' => 'pvu', 'Phvul.005G127100' => 'pvu', 'Phvul.006G149500' => 'pvu', 'Phvul.006G149600' => 'pvu', 'Phvul.011G071800' => 'pvu', 'Phvul.011G090400' => 'pvu', 'Potri.004G013400' => 'ptr', 'Potri.004G188100' => 'ptr', 'Potri.008G195500' => 'ptr', 'Potri.009G148800' => 'ptr', 'Potri.011G004700' => 'ptr', 'Pp3c17_22810' => 'ppa', 'Pp3c18_4480' => 'ppa', 'Pp3c19_13030' => 'ppa', 'Pp3c1_33620' => 'ppa', 'Pp3c2_9380' => 'ppa', 'PRCOL_00001023' => 'pco', 'Prupe.3G216300' => 'ppe', 'Prupe.4G019500' => 'ppe', 'Prupe.6G092500' => 'ppe', 'Prupe.6G119200' => 'ppe', 'Psat0s1945g0080' => 'psa', 'Psat0s4167g0040' => 'psa', 'Psat1g185800' => 'psa', 'Psat4g006440' => 'psa', 'Psat4g006480' => 'psa', 'Psat4g168120' => 'psa', 'Psat5g255680' => 'psa', 'Psat5g261760' => 'psa', 'Psat7g222120' => 'psa', 'PSO063G7252' => 'pso', 'PSO170G4778' => 'pso', 'PSO210G2249' => 'pso', 'PSO339G2411' => 'pso', 'PSO339G2457' => 'pso', 'PSO339G2854' => 'pso', 'PSO339G4288' => 'pso', 'PSO339G4615' => 'pso', 'PSO384G2796' => 'pso', 'PSO384G2940' => 'pso', 'PSO384G4227' => 'pso', 'PSO478G1425' => 'pso', 'PSO541G3863' => 'pso', 'PSO675G0507' => 'pso', 'PSO782G0338' => 'pso', 'PSO832G0644' => 'pso', 'QL01p013664' => 'qlo', 'QL01p036598' => 'qlo', 'QL05p072984' => 'qlo', 'QL08p005768' => 'qlo', 'QL08p032743' => 'qlo', 'QL93p0073_0439' => 'qlo', 'QL93p0073_0444' => 'qlo', 'RcHm_v2.0_Chr5g0002851' => 'rch', 'RcHm_v2.0_Chr5g0055201' => 'rch', 'RcHm_v2.0_Chr5g0061191' => 'rch', 'RcHm_v2.0_Chr7g0203231' => 'rch', 'Rhsim01G0208100' => 'rsi', 'Rhsim01G0208200' => 'rsi', 'Rhsim02G0106500' => 'rsi', 'Rhsim03G0107900' => 'rsi', 'Rhsim06G0163400' => 'rsi', 'Rhsim13G0105200' => 'rsi', 'Sabra04G0006300' => 'sbr', 'Sabra04G0127000' => 'sbr', 'Sabra08G0148700' => 'sbr', 'Sabra09G0117400' => 'sbr', 'SalBow1G3326' => 'sbo', 'SalBow3G3228' => 'sbo', 'SalBow6G1634' => 'sbo', 'SalBow6G3603' => 'sbo', 'SalBow6G5266' => 'sbo', 'SalBow7G2265' => 'sbo', 'SalBow8G0850' => 'sbo', 'SalBow8G2592' => 'sbo', 'Sc05g0009240' => 'sci', 'Sc12g0002300' => 'sci', 'Sc21g0000100' => 'sci', 'Sc21g0004720' => 'sci', 'Sed0002949' => 'sed', 'Sed0004114' => 'sed', 'Sed0004306' => 'sed', 'Sed0006172' => 'sed', 'Sed0008413' => 'sed', 'Sed0013809' => 'sed', 'Sed0019556' => 'sed', 'SEGI_03570' => 'sgi', 'SEGI_07859' => 'sgi', 'SEGI_15042' => 'sgi', 'SEGI_16263' => 'sgi', 'SEGI_16552' => 'sgi', 'SEGI_24331' => 'sgi', 'SEGI_27316' => 'sgi', 'SEGI_29521' => 'sgi', 'SEGI_41342' => 'sgi', 'SGA_v2.0_scaffold27G11617' => 'sas', 'SGA_v2.0_scaffold316G48428' => 'sas', 'SGA_v2.0_scaffold49G18261' => 'sas', 'SGA_v2.0_scaffold7G03831' => 'sas', 'SGA_v2.0_scaffold93G28359' => 'sas', 'SHI02210' => 'shi', 'SHI06028' => 'shi', 'SHI06321' => 'shi', 'SMO111G0012' => 'smo', 'SMO228G0080' => 'smo', 'SMO356G0756' => 'smo', 'Solyc02g080620.3' => 'sly', 'Solyc06g074530.1' => 'sly', 'Solyc11g066890.1' => 'sly', 'Solyc11g072520.3' => 'sly', 'Sopen02g025330' => 'spe', 'Sopen06g031000' => 'spe', 'Sopen09g008240' => 'spe', 'Sopen09g025210' => 'spe', 'Sopen11g026600' => 'spe', 'Sopen11g030170' => 'spe', 'Sp1g10420' => 'spa', 'Sp3g06570' => 'spa', 'Sp4g10660' => 'spa', 'Sp5g16460' => 'spa', 'Sp6g22710' => 'spa', 'TAR365G0112' => 'tar', 'TAR369G0717' => 'tar', 'TAR374G0976' => 'tar', 'TAR623G1128' => 'tar', 'TAR626G1937' => 'tar', 'TAR627G0123' => 'tar', 'TAR628G0305' => 'tar', 'TAR636G1176' => 'tar', 'TAR636G2442' => 'tar', 'THA.LOC104800556' => 'tha', 'THA.LOC104809501' => 'tha', 'THA.LOC104815126' => 'tha', 'THA.LOC104815732' => 'tha', 'THA.LOC104823528' => 'tha', 'Thecc.02G365600' => 'tca', 'Thecc.06G222300' => 'tca', 'Thecc.09G261800' => 'tca', 'Thecc.09G291400' => 'tca', 'Thhalv10003028m.g' => 'esa', 'Thhalv10007886m.g' => 'esa', 'Thhalv10016085m.g' => 'esa', 'Thhalv10016681m.g' => 'esa', 'Thhalv10020951m.g' => 'esa', 'TPR.G15598' => 'tpr', 'TPR.G29305' => 'tpr', 'TPR.G32395' => 'tpr', 'TPR.G36998' => 'tpr', 'TPR.G4227' => 'tpr', 'TWI18G1433' => 'twi', 'TWI31G0755' => 'twi', 'TWI38G0912' => 'twi', 'TWI75G1097' => 'twi', 'TWI75G1619' => 'twi', 'TWI79G1336' => 'twi', 'unitig_0.g943' => 'ugi', 'unitig_0.g944' => 'ugi', 'unitig_22.g6646' => 'ugi', 'unitig_37.g12681' => 'ugi', 'unitig_8.g3290' => 'ugi', 'vmacro03278' => 'vma', 'vmacro12197' => 'vma', 'vmacro14478' => 'vma', 'vmacro15787' => 'vma', 'vmacro15789' => 'vma', 'vmacro15790' => 'vma', 'vmacro15806' => 'vma', 'vmacro22907' => 'vma', 'vmacro22908' => 'vma', 'vmacro22909' => 'vma', 'vmacro23108' => 'vma', 'VMungo0540G0540' => 'vmu', 'VMungo0540G2468' => 'vmu', 'VMungo1080G0390' => 'vmu', 'VMungo1080G1165' => 'vmu', 'VMungo1127G0170' => 'vmu', 'VMungo1127G2099' => 'vmu', 'VMungo1215G3013' => 'vmu', 'Zm00001eb013110' => 'zma', 'Zm00001eb084260' => 'zma', 'Zm00001eb096110' => 'zma', 'Zm00001eb217510' => 'zma', 'Zm00001eb322550' => 'zma', 'Zm00001eb390770' => 'zma', 'Zm00001eb397170' => 'zma', 'Zm00001eb404610' => 'zma', 'Zm00001eb421790' => 'zma' ), 'gf_id' => 'HOM05D000911', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000911' ), 'data_identifier' => 'HOM05D000911', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000911', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27780' => 'bna', 'A03p35380' => 'bna', 'A04p21160' => 'bna', 'A05p40570' => 'bna', 'A06p26900' => 'bna', 'A08p33230' => 'bna', 'A09p65960' => 'bna', 'A10p18290' => 'bna', 'Aa31LG1G12990' => 'aar', 'Aa31LG1G2980' => 'aar', 'Aa31LG4G14320' => 'aar', 'Aa31LG7G11800' => 'aar', 'Aa31sc36G50' => 'aar', 'Aa31sc36G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3721' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5459' => 'aag', 'Actinidia03028' => 'ach', 'Actinidia03753' => 'ach', 'Actinidia04187' => 'ach', 'Actinidia05509' => 'ach', 'Actinidia24180' => 'ach', 'Actinidia26906' => 'ach', 'Actinidia37097' => 'ach', 'Actinidia38249' => 'ach', 'Ah.01g003470' => 'amhyb', 'Ah.01g004580' => 'amhyb', 'Ah.01g014850' => 'amhyb', 'Ah.01g016830' => 'amhyb', 'Ah.14g088000' => 'amhyb', 'AL1G22980' => 'aly', 'AL3G18990' => 'aly', 'AL4G22440' => 'aly', 'AL4G33180' => 'aly', 'AL5G22920' => 'aly', 'AL6G33660' => 'aly', 'AL8G20720' => 'aly', 'Aqoxy1G00935' => 'aox', 'Aqoxy1G02094' => 'aox', 'Aqoxy2G01239' => 'aox', 'Aqoxy4G01870' => 'aox', 'Aqoxy7G00450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.36ZVTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71EM27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5D6C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH3WRE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3NCM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RIM768' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YB5YRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z36GDV' => 'arhy', 'AT1G08250' => 'ath', 'AT1G11790' => 'ath', 'AT2G27820' => 'ath', 'AT3G07630' => 'ath', 'AT3G44720' => 'ath', 'AT5G22630' => 'ath', 'ATR0693G304' => 'atr', 'ATR0794G109' => 'atr', 'ATR0820G120' => 'atr', 'ATR1159G064' => 'atr', 'Atru.chr10.2239' => 'acertr', 'Atru.chr3.3371' => 'acertr', 'Atru.chr6.3202' => 'acertr', 'AUR62006499' => 'cqu', 'AUR62012718' => 'cqu', 'AUR62021938' => 'cqu', 'AUR62023932' => 'cqu', 'AUR62025034' => 'cqu', 'AUR62025035' => 'cqu', 'AUR62038307' => 'cqu', 'AUR62043466' => 'cqu', 'BcaB02g10748' => 'bca', 'BcaB03g13231' => 'bca', 'BcaB03g14689' => 'bca', 'BcaB05g22716' => 'bca', 'BcaB06g28172' => 'bca', 'BcaB08g36413' => 'bca', 'BcaC01g02186' => 'bca', 'BcaC01g04272' => 'bca', 'BcaC02g08080' => 'bca', 'BcaC02g08227' => 'bca', 'BcaC03g13901' => 'bca', 'BcaC04g19593' => 'bca', 'BcaC04g20874' => 'bca', 'BcaC05g29557' => 'bca', 'BcaC06g35505' => 'bca', 'BcaC07g41954' => 'bca', 'BcaC07g41955' => 'bca', 'BcaC07g41956' => 'bca', 'BcaC07g42519' => 'bca', 'BcaC07g42520' => 'bca', 'BcaC07g42523' => 'bca', 'BcaC07g42524' => 'bca', 'BcaC07g42525' => 'bca', 'BcaC08g47480' => 'bca', 'BcaC08g47481' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00530' => 'bna', 'BolC2t07178H' => 'bol', 'BolC3t16567H' => 'bol', 'BolC4t27234H' => 'bol', 'BolC5t29728H' => 'bol', 'BolC5t34622H' => 'bol', 'BolC6t40321H' => 'bol', 'BolC7t42028H' => 'bol', 'BolC8t49125H' => 'bol', 'BolC8t52538H' => 'bol', 'BolC8t52539H' => 'bol', 'BolC9t56681H' => 'bol', 'BolC9t58266H' => 'bol', 'BolSC21t60294H' => 'bol', 'BraA02t05670Z' => 'bra', 'BraA03t12716Z' => 'bra', 'BraA04t17685Z' => 'bra', 'BraA05t22788Z' => 'bra', 'BraA06t24032Z' => 'bra', 'BraA06t25625Z' => 'bra', 'BraA07t27930Z' => 'bra', 'BraA08t35242Z' => 'bra', 'BraA09t38609Z' => 'bra', 'BraA10t43905Z' => 'bra', 'C02p11060' => 'bna', 'C03p42990' => 'bna', 'C03p67310' => 'bna', 'C04p56990' => 'bna', 'C04p58660' => 'bna', 'C05p09890' => 'bna', 'C05p59680' => 'bna', 'C06p19830' => 'bna', 'C06p53040' => 'bna', 'C07p15230' => 'bna', 'C08p50070' => 'bna', 'C08p50090' => 'bna', 'C09p38330' => 'bna', 'C09p53940' => 'bna', 'CAN.G1014.1' => 'can', 'CAN.G644.30' => 'can', 'CAN.G84.47' => 'can', 'CAN.G919.8' => 'can', 'CANSAT54G0113' => 'cansat', 'CANSAT54G1286' => 'cansat', 'CANSAT64G1020' => 'cansat', 'CARHR008080' => 'chi', 'CARHR008090' => 'chi', 'CARHR012130' => 'chi', 'CARHR038390' => 'chi', 'CARHR082330' => 'chi', 'CARHR120520' => 'chi', 'CARHR151470' => 'chi', 'CARHR190950' => 'chi', 'Carub.0001s0760' => 'cru', 'Carub.0001s1146' => 'cru', 'Carub.0003s0721' => 'cru', 'Carub.0004s0858' => 'cru', 'Carub.0005s1040' => 'cru', 'Carub.0006s2035' => 'cru', 'Carub.0015s0005' => 'cru', 'Ca_01607_v3' => 'car', 'Ca_01677_v3' => 'car', 'Ca_06087_v3' => 'car', 'Ca_19238_v3' => 'car', 'Ca_19373_v3' => 'car', 'Ca_21079_v3' => 'car', 'CBR_g54016' => 'cbr', 'CBR_g54018' => 'cbr', 'CBR_g54020' => 'cbr', 'Cc01_g09780' => 'ccan', 'Cc01_g11680' => 'ccan', 'Cc02_g15610' => 'ccan', 'Cc05_g04350' => 'ccan', 'Cc09_g01580' => 'ccan', 'CDE01G0795' => 'cde', 'CDE02G2024' => 'cde', 'CDE02G2260' => 'cde', 'CDE02G4561' => 'cde', 'CDE05G2733' => 'cde', 'CDE05G3422' => 'cde', 'CDE06G2003' => 'cde', 'CDE08G0576' => 'cde', 'CDE09G0048' => 'cde', 'CDE11G0805' => 'cde', 'Cfa003644' => 'cfa', 'Cfa006290' => 'cfa', 'Cfa010080' => 'cfa', 'Cfa011376' => 'cfa', 'Cfa011576' => 'cfa', 'Cfa011577' => 'cfa', 'Cfa014389' => 'cfa', 'Ciclev10006044m.g' => 'ccl', 'Ciclev10006954m.g' => 'ccl', 'Ciclev10015131m.g' => 'ccl', 'Ciclev10015580m.g' => 'ccl', 'Ciclev10028359m.g' => 'ccl', 'Ciclev10028573m.g' => 'ccl', 'CiPaw.03G159300' => 'cil', 'CiPaw.04G115100' => 'cil', 'CiPaw.09G092800' => 'cil', 'CiPaw.10G071800' => 'cil', 'CiPaw.13G105800' => 'cil', 'CiPaw.13G141000' => 'cil', 'CiPaw.14G103400' => 'cil', 'ClCG01G012700' => 'cla', 'ClCG01G012720' => 'cla', 'ClCG01G021920' => 'cla', 'ClCG02G008870' => 'cla', 'ClCG02G020840' => 'cla', 'ClCG02G021930' => 'cla', 'COL.COLO4_19302' => 'col', 'COL.COLO4_25262' => 'col', 'COL.COLO4_31788' => 'col', 'Cpa.g.c34684' => 'cpa', 'Cpa.g.c36520.1' => 'cpa', 'Cpa.g.c45626' => 'cpa', 'Cpa.g.sc121.17' => 'cpa', 'Cpa.g.sc13.22' => 'cpa', 'Cpa.g.sc87.88' => 'cpa', 'Cre06.g261800' => 'cre', 'CsaV3_1G014500' => 'csa', 'CsaV3_1G014510' => 'csa', 'CsaV3_2G034880' => 'csa', 'CsaV3_6G014760' => 'csa', 'CsaV3_6G021500' => 'csa', 'CsaV3_6G048980' => 'csa', 'CSS0002511' => 'camsi', 'CSS0007556' => 'camsi', 'CSS0008532' => 'camsi', 'CSS0009709' => 'camsi', 'CSS0010486' => 'camsi', 'CSS0016768' => 'camsi', 'CSS0023512' => 'camsi', 'CSS0025341' => 'camsi', 'CSS0027999' => 'camsi', 'CSS0028944' => 'camsi', 'CSS0032292' => 'camsi', 'CSS0032464' => 'camsi', 'CSS0037153' => 'camsi', 'CSS0039256' => 'camsi', 'CSS0048392' => 'camsi', 'CSS0050458' => 'camsi', 'DCAR_004224' => 'dca', 'DCAR_006147' => 'dca', 'DCAR_006465' => 'dca', 'DCAR_008159' => 'dca', 'DCAR_012164' => 'dca', 'DCAR_019764' => 'dca', 'Dinv05418' => 'din', 'Dinv10839' => 'din', 'Dinv12521' => 'din', 'Dinv13900' => 'din', 'Dinv29426' => 'din', 'Duzib150G0263' => 'dzi', 'Duzib168G1178' => 'dzi', 'Duzib168G1924' => 'dzi', 'Duzib170G0299' => 'dzi', 'Duzib170G0813' => 'dzi', 'Duzib235G1128' => 'dzi', 'Duzib248G1060' => 'dzi', 'ECA232G1910' => 'eca', 'ECA233G4621' => 'eca', 'ECA238G1216' => 'eca', 'ECA238G1784' => 'eca', 'ECA248G1242' => 'eca', 'EL10Ac8g20071' => 'bvu', 'EL10Ac9g21086' => 'bvu', 'EL10Ac9g22407' => 'bvu', 'EL10Ac9g22412' => 'bvu', 'Eucgr.A01119' => 'egr', 'Eucgr.E04043' => 'egr', 'Eucgr.J00428' => 'egr', 'Eucgr.J00958' => 'egr', 'FAN11G3091' => 'fan', 'FAN11G3651' => 'fan', 'FAN16G2566' => 'fan', 'FAN21G3155' => 'fan', 'FAN21G3400' => 'fan', 'FAN21G3543' => 'fan', 'FAN25G0234' => 'fan', 'FAN25G1422' => 'fan', 'FAN25G3392' => 'fan', 'FvH4_3g01940' => 'fve', 'FvH4_3g29870' => 'fve', 'FvH4_3g33680' => 'fve', 'Glyma.09G004200' => 'gma', 'Glyma.11G151288' => 'gma', 'Glyma.11G189100' => 'gma', 'Glyma.12G072500' => 'gma', 'Glyma.12G085500' => 'gma', 'Glyma.12G181800' => 'gma', 'Glyma.12G193000' => 'gma', 'Glyma.13G309300' => 'gma', 'Glyma.13G319000' => 'gma', 'Glyma.17G012600' => 'gma', 'Gohir.A06G148600' => 'ghi', 'Gohir.A07G115800' => 'ghi', 'Gohir.A08G003600' => 'ghi', 'Gohir.A09G093300' => 'ghi', 'Gohir.A09G105400' => 'ghi', 'Gohir.A09G105500' => 'ghi', 'Gohir.D06G154600' => 'ghi', 'Gohir.D07G120200' => 'ghi', 'Gohir.D08G013900' => 'ghi', 'Gohir.D09G093100' => 'ghi', 'Gohir.D09G102200' => 'ghi', 'Gohir.D09G102300' => 'ghi', 'Gorai.001G129400' => 'gra', 'Gorai.004G008200' => 'gra', 'Gorai.006G109800' => 'gra', 'Gorai.006G119500' => 'gra', 'Gorai.006G121300' => 'gra', 'Gorai.010G180700' => 'gra', 'GSVIVG01012716001' => 'vvi', 'GSVIVG01025118001' => 'vvi', 'GSVIVG01030439001' => 'vvi', 'GSVIVG01031397001' => 'vvi', 'HanXRQChr01g0004201' => 'han', 'HanXRQChr02g0054941' => 'han', 'HanXRQChr05g0141811' => 'han', 'HanXRQChr07g0197751' => 'han', 'HanXRQChr11g0346691' => 'han', 'HanXRQChr13g0396971' => 'han', 'HanXRQChr14g0432951' => 'han', 'HanXRQChr14g0452001' => 'han', 'HanXRQChr15g0496681' => 'han', 'HanXRQChr17g0557491' => 'han', 'HanXRQChr17g0557501' => 'han', 'Haze_06809' => 'cav', 'Haze_12852' => 'cav', 'Haze_15850' => 'cav', 'Haze_23446' => 'cav', 'Haze_23942' => 'cav', 'Haze_23943' => 'cav', 'Hma1.2p1_0091F.1_g046450' => 'hma', 'Hma1.2p1_0128F.1_g059910' => 'hma', 'Hma1.2p1_0249F.1_g102260' => 'hma', 'Hma1.2p1_0453F.1_g156190' => 'hma', 'Hma1.2p1_0695F.1_g204380' => 'hma', 'Hma1.2p1_0749F.1_g212650' => 'hma', 'Hma1.2p1_2156F.1_g315420' => 'hma', 'Hma1.2p1_2686F.1_g326940' => 'hma', 'HPP92_006428' => 'vpl', 'HPP92_012069' => 'vpl', 'HPP92_014129' => 'vpl', 'HPP92_014133' => 'vpl', 'HPP92_017315' => 'vpl', 'HPP92_026445' => 'vpl', 'HPP92_026446' => 'vpl', 'Hund00774' => 'sun', 'Hund07682' => 'sun', 'Hund21413' => 'sun', 'Hund23462' => 'sun', 'Hund23463' => 'sun', 'Lalb_Chr03g0027911' => 'lal', 'Lalb_Chr13g0304271' => 'lal', 'Lalb_Chr19g0137471' => 'lal', 'Lalb_Chr22g0350651' => 'lal', 'Lalb_Chr24g0395151' => 'lal', 'Lj1A1231T40' => 'lonja', 'Lj1A221T48' => 'lonja', 'Lj1C924T12' => 'lonja', 'Lj2C993G6' => 'lonja', 'Lj3g0005790' => 'lja', 'Lj3g0015432' => 'lja', 'Lj3g0017722' => 'lja', 'Lj3g0018497' => 'lja', 'Lj4g0025071' => 'lja', 'Lsat_1_v5_gn_1_129680' => 'lsa', 'Lsat_1_v5_gn_2_25321' => 'lsa', 'Lsat_1_v5_gn_2_95461' => 'lsa', 'Lsat_1_v5_gn_4_159620' => 'lsa', 'Lsat_1_v5_gn_6_41301' => 'lsa', 'Lsat_1_v5_gn_6_74660' => 'lsa', 'Lsat_1_v5_gn_7_11520' => 'lsa', 'Lsat_1_v5_gn_9_67680' => 'lsa', 'Manes.04G008300' => 'mes', 'Manes.04G008400' => 'mes', 'Manes.04G026500' => 'mes', 'Manes.10G135300' => 'mes', 'Manes.11G157300' => 'mes', 'Manes.12G074000' => 'mes', 'Manes.16G006200' => 'mes', 'Manes.17G026400' => 'mes', 'Mapoly0024s0086' => 'mpo', 'Mapoly0024s0087' => 'mpo', 'Mapoly0071s0057' => 'mpo', 'Mapoly0204s0012' => 'mpo', 'MBI04_g37681_MAGBIO' => 'mbi', 'MBI05_g17779_MAGBIO' => 'mbi', 'MBI12_g31184_MAGBIO' => 'mbi', 'MBI17_g11083_MAGBIO' => 'mbi', 'MBI18_g03883_MAGBIO' => 'mbi', 'MBI18_g28940_MAGBIO' => 'mbi', 'MCO01G690' => 'mco', 'MD03G1109900' => 'mdo', 'MD03G1134800' => 'mdo', 'MD05G1348000' => 'mdo', 'MD10G1322400' => 'mdo', 'MD11G1123300' => 'mdo', 'MD11G1157600' => 'mdo', 'Medtr2g084875' => 'mtr', 'Medtr2g088130' => 'mtr', 'Medtr4g055310' => 'mtr', 'Medtr4g061070' => 'mtr', 'Medtr4g132250' => 'mtr', 'MELO3C004795.2' => 'cme', 'MELO3C004797.2' => 'cme', 'MELO3C007396.2' => 'cme', 'MELO3C019277.2' => 'cme', 'MELO3C021449.2' => 'cme', 'MELO3C025736.2' => 'cme', 'Migut.D02175' => 'egut', 'Migut.H01573' => 'egut', 'Migut.M01327' => 'egut', 'Migut.N02513' => 'egut', 'MSTRG.14638' => 'ama', 'MSTRG.18632' => 'ama', 'MSTRG.7203' => 'ama', 'Nitab4.5_0000533g0140' => 'nta', 'Nitab4.5_0000888g0150' => 'nta', 'Nitab4.5_0001453g0040' => 'nta', 'Nitab4.5_0002827g0090' => 'nta', 'Nitab4.5_0003082g0040' => 'nta', 'Nitab4.5_0007799g0040' => 'nta', 'Nitab4.5_0008983g0010' => 'nta', 'Nitab4.5_0009017g0020' => 'nta', 'Nn1g02132' => 'nnu', 'Nn1g03492' => 'nnu', 'Nn1g03493' => 'nnu', 'Nn1g03494' => 'nnu', 'Nn1g07164' => 'nnu', 'Nn1g07291' => 'nnu', 'Nn2g10655' => 'nnu', 'Nn2g11652' => 'nnu', 'Nn2g14008' => 'nnu', 'Nn3g17476' => 'nnu', 'Nn3g17477' => 'nnu', 'Nn4g22370' => 'nnu', 'Nn4g25255' => 'nnu', 'Nn5g27755' => 'nnu', 'Nn6g34260' => 'nnu', 'Nn6g35041' => 'nnu', 'Oeu005924.1' => 'oeu', 'Oeu008383.1' => 'oeu', 'Oeu014928.1' => 'oeu', 'Oeu019889.1' => 'oeu', 'Oeu022271.1' => 'oeu', 'Oeu025271.1' => 'oeu', 'Oeu036302.1' => 'oeu', 'Oeu044100.1' => 'oeu', 'Os01g0528300' => 'osa', 'Os03g0286200' => 'osa', 'Os04g0406600' => 'osa', 'Os07g0512000' => 'osa', 'Os07g0694600' => 'osa', 'Os08g0411000' => 'osa', 'Os09g0565700' => 'osa', 'Os09g0566050' => 'osa', 'Os10g0523700' => 'osa', 'Peaxi162Scf00002g00514' => 'pax', 'Peaxi162Scf00047g01817' => 'pax', 'Peaxi162Scf00114g00001' => 'pax', 'Peaxi162Scf00147g00613' => 'pax', 'Peaxi162Scf00389g00425' => 'pax', 'PGR042G1139' => 'pgr', 'PGR042G3273' => 'pgr', 'PGR102G2180' => 'pgr', 'PGR119G0234' => 'pgr', 'PGR119G0668' => 'pgr', 'PGSC0003DMG400007122' => 'stu', 'PGSC0003DMG400016478' => 'stu', 'PGSC0003DMG400025374' => 'stu', 'PGSC0003DMG400026536' => 'stu', 'Phvul.003G079600' => 'pvu', 'Phvul.005G115600' => 'pvu', 'Phvul.005G127100' => 'pvu', 'Phvul.006G149500' => 'pvu', 'Phvul.006G149600' => 'pvu', 'Phvul.011G071800' => 'pvu', 'Phvul.011G090400' => 'pvu', 'Potri.004G013400' => 'ptr', 'Potri.004G188100' => 'ptr', 'Potri.008G195500' => 'ptr', 'Potri.009G148800' => 'ptr', 'Potri.011G004700' => 'ptr', 'Pp3c17_22810' => 'ppa', 'Pp3c18_4480' => 'ppa', 'Pp3c19_13030' => 'ppa', 'Pp3c1_33620' => 'ppa', 'Pp3c2_9380' => 'ppa', 'PRCOL_00001023' => 'pco', 'Prupe.3G216300' => 'ppe', 'Prupe.4G019500' => 'ppe', 'Prupe.6G092500' => 'ppe', 'Prupe.6G119200' => 'ppe', 'Psat0s1945g0080' => 'psa', 'Psat0s4167g0040' => 'psa', 'Psat1g185800' => 'psa', 'Psat4g006440' => 'psa', 'Psat4g006480' => 'psa', 'Psat4g168120' => 'psa', 'Psat5g255680' => 'psa', 'Psat5g261760' => 'psa', 'Psat7g222120' => 'psa', 'PSO063G7252' => 'pso', 'PSO170G4778' => 'pso', 'PSO210G2249' => 'pso', 'PSO339G2411' => 'pso', 'PSO339G2457' => 'pso', 'PSO339G2854' => 'pso', 'PSO339G4288' => 'pso', 'PSO339G4615' => 'pso', 'PSO384G2796' => 'pso', 'PSO384G2940' => 'pso', 'PSO384G4227' => 'pso', 'PSO478G1425' => 'pso', 'PSO541G3863' => 'pso', 'PSO675G0507' => 'pso', 'PSO782G0338' => 'pso', 'PSO832G0644' => 'pso', 'QL01p013664' => 'qlo', 'QL01p036598' => 'qlo', 'QL05p072984' => 'qlo', 'QL08p005768' => 'qlo', 'QL08p032743' => 'qlo', 'QL93p0073_0439' => 'qlo', 'QL93p0073_0444' => 'qlo', 'RcHm_v2.0_Chr5g0002851' => 'rch', 'RcHm_v2.0_Chr5g0055201' => 'rch', 'RcHm_v2.0_Chr5g0061191' => 'rch', 'RcHm_v2.0_Chr7g0203231' => 'rch', 'Rhsim01G0208100' => 'rsi', 'Rhsim01G0208200' => 'rsi', 'Rhsim02G0106500' => 'rsi', 'Rhsim03G0107900' => 'rsi', 'Rhsim06G0163400' => 'rsi', 'Rhsim13G0105200' => 'rsi', 'Sabra04G0006300' => 'sbr', 'Sabra04G0127000' => 'sbr', 'Sabra08G0148700' => 'sbr', 'Sabra09G0117400' => 'sbr', 'SalBow1G3326' => 'sbo', 'SalBow3G3228' => 'sbo', 'SalBow6G1634' => 'sbo', 'SalBow6G3603' => 'sbo', 'SalBow6G5266' => 'sbo', 'SalBow7G2265' => 'sbo', 'SalBow8G0850' => 'sbo', 'SalBow8G2592' => 'sbo', 'Sc05g0009240' => 'sci', 'Sc12g0002300' => 'sci', 'Sc21g0000100' => 'sci', 'Sc21g0004720' => 'sci', 'Sed0002949' => 'sed', 'Sed0004114' => 'sed', 'Sed0004306' => 'sed', 'Sed0006172' => 'sed', 'Sed0008413' => 'sed', 'Sed0013809' => 'sed', 'Sed0019556' => 'sed', 'SEGI_03570' => 'sgi', 'SEGI_07859' => 'sgi', 'SEGI_15042' => 'sgi', 'SEGI_16263' => 'sgi', 'SEGI_16552' => 'sgi', 'SEGI_24331' => 'sgi', 'SEGI_27316' => 'sgi', 'SEGI_29521' => 'sgi', 'SEGI_41342' => 'sgi', 'SGA_v2.0_scaffold27G11617' => 'sas', 'SGA_v2.0_scaffold316G48428' => 'sas', 'SGA_v2.0_scaffold49G18261' => 'sas', 'SGA_v2.0_scaffold7G03831' => 'sas', 'SGA_v2.0_scaffold93G28359' => 'sas', 'SHI02210' => 'shi', 'SHI06028' => 'shi', 'SHI06321' => 'shi', 'SMO111G0012' => 'smo', 'SMO228G0080' => 'smo', 'SMO356G0756' => 'smo', 'Solyc02g080620.3' => 'sly', 'Solyc06g074530.1' => 'sly', 'Solyc11g066890.1' => 'sly', 'Solyc11g072520.3' => 'sly', 'Sopen02g025330' => 'spe', 'Sopen06g031000' => 'spe', 'Sopen09g008240' => 'spe', 'Sopen09g025210' => 'spe', 'Sopen11g026600' => 'spe', 'Sopen11g030170' => 'spe', 'Sp1g10420' => 'spa', 'Sp3g06570' => 'spa', 'Sp4g10660' => 'spa', 'Sp5g16460' => 'spa', 'Sp6g22710' => 'spa', 'TAR365G0112' => 'tar', 'TAR369G0717' => 'tar', 'TAR374G0976' => 'tar', 'TAR623G1128' => 'tar', 'TAR626G1937' => 'tar', 'TAR627G0123' => 'tar', 'TAR628G0305' => 'tar', 'TAR636G1176' => 'tar', 'TAR636G2442' => 'tar', 'THA.LOC104800556' => 'tha', 'THA.LOC104809501' => 'tha', 'THA.LOC104815126' => 'tha', 'THA.LOC104815732' => 'tha', 'THA.LOC104823528' => 'tha', 'Thecc.02G365600' => 'tca', 'Thecc.06G222300' => 'tca', 'Thecc.09G261800' => 'tca', 'Thecc.09G291400' => 'tca', 'Thhalv10003028m.g' => 'esa', 'Thhalv10007886m.g' => 'esa', 'Thhalv10016085m.g' => 'esa', 'Thhalv10016681m.g' => 'esa', 'Thhalv10020951m.g' => 'esa', 'TPR.G15598' => 'tpr', 'TPR.G29305' => 'tpr', 'TPR.G32395' => 'tpr', 'TPR.G36998' => 'tpr', 'TPR.G4227' => 'tpr', 'TWI18G1433' => 'twi', 'TWI31G0755' => 'twi', 'TWI38G0912' => 'twi', 'TWI75G1097' => 'twi', 'TWI75G1619' => 'twi', 'TWI79G1336' => 'twi', 'unitig_0.g943' => 'ugi', 'unitig_0.g944' => 'ugi', 'unitig_22.g6646' => 'ugi', 'unitig_37.g12681' => 'ugi', 'unitig_8.g3290' => 'ugi', 'vmacro03278' => 'vma', 'vmacro12197' => 'vma', 'vmacro14478' => 'vma', 'vmacro15787' => 'vma', 'vmacro15789' => 'vma', 'vmacro15790' => 'vma', 'vmacro15806' => 'vma', 'vmacro22907' => 'vma', 'vmacro22908' => 'vma', 'vmacro22909' => 'vma', 'vmacro23108' => 'vma', 'VMungo0540G0540' => 'vmu', 'VMungo0540G2468' => 'vmu', 'VMungo1080G0390' => 'vmu', 'VMungo1080G1165' => 'vmu', 'VMungo1127G0170' => 'vmu', 'VMungo1127G2099' => 'vmu', 'VMungo1215G3013' => 'vmu', 'Zm00001eb013110' => 'zma', 'Zm00001eb084260' => 'zma', 'Zm00001eb096110' => 'zma', 'Zm00001eb217510' => 'zma', 'Zm00001eb322550' => 'zma', 'Zm00001eb390770' => 'zma', 'Zm00001eb397170' => 'zma', 'Zm00001eb404610' => 'zma', 'Zm00001eb421790' => 'zma' ) $gf_id = 'HOM05D000911' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000911' ) $data_identifier = 'HOM05D000911' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 16, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 5, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 6, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 8, 'nnu' => (int) 16, 'oeu' => (int) 8, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 5, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 16, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421790' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000911', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27780' => 'bna', 'A03p35380' => 'bna', 'A04p21160' => 'bna', 'A05p40570' => 'bna', 'A06p26900' => 'bna', 'A08p33230' => 'bna', 'A09p65960' => 'bna', 'A10p18290' => 'bna', 'Aa31LG1G12990' => 'aar', 'Aa31LG1G2980' => 'aar', 'Aa31LG4G14320' => 'aar', 'Aa31LG7G11800' => 'aar', 'Aa31sc36G50' => 'aar', 'Aa31sc36G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3721' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5459' => 'aag', 'Actinidia03028' => 'ach', 'Actinidia03753' => 'ach', 'Actinidia04187' => 'ach', 'Actinidia05509' => 'ach', 'Actinidia24180' => 'ach', 'Actinidia26906' => 'ach', 'Actinidia37097' => 'ach', 'Actinidia38249' => 'ach', 'Ah.01g003470' => 'amhyb', 'Ah.01g004580' => 'amhyb', 'Ah.01g014850' => 'amhyb', 'Ah.01g016830' => 'amhyb', 'Ah.14g088000' => 'amhyb', 'AL1G22980' => 'aly', 'AL3G18990' => 'aly', 'AL4G22440' => 'aly', 'AL4G33180' => 'aly', 'AL5G22920' => 'aly', 'AL6G33660' => 'aly', 'AL8G20720' => 'aly', 'Aqoxy1G00935' => 'aox', 'Aqoxy1G02094' => 'aox', 'Aqoxy2G01239' => 'aox', 'Aqoxy4G01870' => 'aox', 'Aqoxy7G00450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.36ZVTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71EM27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5D6C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH3WRE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3NCM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RIM768' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YB5YRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z36GDV' => 'arhy', 'AT1G08250' => 'ath', 'AT1G11790' => 'ath', 'AT2G27820' => 'ath', 'AT3G07630' => 'ath', 'AT3G44720' => 'ath', 'AT5G22630' => 'ath', 'ATR0693G304' => 'atr', 'ATR0794G109' => 'atr', 'ATR0820G120' => 'atr', 'ATR1159G064' => 'atr', 'Atru.chr10.2239' => 'acertr', 'Atru.chr3.3371' => 'acertr', 'Atru.chr6.3202' => 'acertr', 'AUR62006499' => 'cqu', 'AUR62012718' => 'cqu', 'AUR62021938' => 'cqu', 'AUR62023932' => 'cqu', 'AUR62025034' => 'cqu', 'AUR62025035' => 'cqu', 'AUR62038307' => 'cqu', 'AUR62043466' => 'cqu', 'BcaB02g10748' => 'bca', 'BcaB03g13231' => 'bca', 'BcaB03g14689' => 'bca', 'BcaB05g22716' => 'bca', 'BcaB06g28172' => 'bca', 'BcaB08g36413' => 'bca', 'BcaC01g02186' => 'bca', 'BcaC01g04272' => 'bca', 'BcaC02g08080' => 'bca', 'BcaC02g08227' => 'bca', 'BcaC03g13901' => 'bca', 'BcaC04g19593' => 'bca', 'BcaC04g20874' => 'bca', 'BcaC05g29557' => 'bca', 'BcaC06g35505' => 'bca', 'BcaC07g41954' => 'bca', 'BcaC07g41955' => 'bca', 'BcaC07g41956' => 'bca', 'BcaC07g42519' => 'bca', 'BcaC07g42520' => 'bca', 'BcaC07g42523' => 'bca', 'BcaC07g42524' => 'bca', 'BcaC07g42525' => 'bca', 'BcaC08g47480' => 'bca', 'BcaC08g47481' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00530' => 'bna', 'BolC2t07178H' => 'bol', 'BolC3t16567H' => 'bol', 'BolC4t27234H' => 'bol', 'BolC5t29728H' => 'bol', 'BolC5t34622H' => 'bol', 'BolC6t40321H' => 'bol', 'BolC7t42028H' => 'bol', 'BolC8t49125H' => 'bol', 'BolC8t52538H' => 'bol', 'BolC8t52539H' => 'bol', 'BolC9t56681H' => 'bol', 'BolC9t58266H' => 'bol', 'BolSC21t60294H' => 'bol', 'BraA02t05670Z' => 'bra', 'BraA03t12716Z' => 'bra', 'BraA04t17685Z' => 'bra', 'BraA05t22788Z' => 'bra', 'BraA06t24032Z' => 'bra', 'BraA06t25625Z' => 'bra', 'BraA07t27930Z' => 'bra', 'BraA08t35242Z' => 'bra', 'BraA09t38609Z' => 'bra', 'BraA10t43905Z' => 'bra', 'C02p11060' => 'bna', 'C03p42990' => 'bna', 'C03p67310' => 'bna', 'C04p56990' => 'bna', 'C04p58660' => 'bna', 'C05p09890' => 'bna', 'C05p59680' => 'bna', 'C06p19830' => 'bna', 'C06p53040' => 'bna', 'C07p15230' => 'bna', 'C08p50070' => 'bna', 'C08p50090' => 'bna', 'C09p38330' => 'bna', 'C09p53940' => 'bna', 'CAN.G1014.1' => 'can', 'CAN.G644.30' => 'can', 'CAN.G84.47' => 'can', 'CAN.G919.8' => 'can', 'CANSAT54G0113' => 'cansat', 'CANSAT54G1286' => 'cansat', 'CANSAT64G1020' => 'cansat', 'CARHR008080' => 'chi', 'CARHR008090' => 'chi', 'CARHR012130' => 'chi', 'CARHR038390' => 'chi', 'CARHR082330' => 'chi', 'CARHR120520' => 'chi', 'CARHR151470' => 'chi', 'CARHR190950' => 'chi', 'Carub.0001s0760' => 'cru', 'Carub.0001s1146' => 'cru', 'Carub.0003s0721' => 'cru', 'Carub.0004s0858' => 'cru', 'Carub.0005s1040' => 'cru', 'Carub.0006s2035' => 'cru', 'Carub.0015s0005' => 'cru', 'Ca_01607_v3' => 'car', 'Ca_01677_v3' => 'car', 'Ca_06087_v3' => 'car', 'Ca_19238_v3' => 'car', 'Ca_19373_v3' => 'car', 'Ca_21079_v3' => 'car', 'CBR_g54016' => 'cbr', 'CBR_g54018' => 'cbr', 'CBR_g54020' => 'cbr', 'Cc01_g09780' => 'ccan', 'Cc01_g11680' => 'ccan', 'Cc02_g15610' => 'ccan', 'Cc05_g04350' => 'ccan', 'Cc09_g01580' => 'ccan', 'CDE01G0795' => 'cde', 'CDE02G2024' => 'cde', 'CDE02G2260' => 'cde', 'CDE02G4561' => 'cde', 'CDE05G2733' => 'cde', 'CDE05G3422' => 'cde', 'CDE06G2003' => 'cde', 'CDE08G0576' => 'cde', 'CDE09G0048' => 'cde', 'CDE11G0805' => 'cde', 'Cfa003644' => 'cfa', 'Cfa006290' => 'cfa', 'Cfa010080' => 'cfa', 'Cfa011376' => 'cfa', 'Cfa011576' => 'cfa', 'Cfa011577' => 'cfa', 'Cfa014389' => 'cfa', 'Ciclev10006044m.g' => 'ccl', 'Ciclev10006954m.g' => 'ccl', 'Ciclev10015131m.g' => 'ccl', 'Ciclev10015580m.g' => 'ccl', 'Ciclev10028359m.g' => 'ccl', 'Ciclev10028573m.g' => 'ccl', 'CiPaw.03G159300' => 'cil', 'CiPaw.04G115100' => 'cil', 'CiPaw.09G092800' => 'cil', 'CiPaw.10G071800' => 'cil', 'CiPaw.13G105800' => 'cil', 'CiPaw.13G141000' => 'cil', 'CiPaw.14G103400' => 'cil', 'ClCG01G012700' => 'cla', 'ClCG01G012720' => 'cla', 'ClCG01G021920' => 'cla', 'ClCG02G008870' => 'cla', 'ClCG02G020840' => 'cla', 'ClCG02G021930' => 'cla', 'COL.COLO4_19302' => 'col', 'COL.COLO4_25262' => 'col', 'COL.COLO4_31788' => 'col', 'Cpa.g.c34684' => 'cpa', 'Cpa.g.c36520.1' => 'cpa', 'Cpa.g.c45626' => 'cpa', 'Cpa.g.sc121.17' => 'cpa', 'Cpa.g.sc13.22' => 'cpa', 'Cpa.g.sc87.88' => 'cpa', 'Cre06.g261800' => 'cre', 'CsaV3_1G014500' => 'csa', 'CsaV3_1G014510' => 'csa', 'CsaV3_2G034880' => 'csa', 'CsaV3_6G014760' => 'csa', 'CsaV3_6G021500' => 'csa', 'CsaV3_6G048980' => 'csa', 'CSS0002511' => 'camsi', 'CSS0007556' => 'camsi', 'CSS0008532' => 'camsi', 'CSS0009709' => 'camsi', 'CSS0010486' => 'camsi', 'CSS0016768' => 'camsi', 'CSS0023512' => 'camsi', 'CSS0025341' => 'camsi', 'CSS0027999' => 'camsi', 'CSS0028944' => 'camsi', 'CSS0032292' => 'camsi', 'CSS0032464' => 'camsi', 'CSS0037153' => 'camsi', 'CSS0039256' => 'camsi', 'CSS0048392' => 'camsi', 'CSS0050458' => 'camsi', 'DCAR_004224' => 'dca', 'DCAR_006147' => 'dca', 'DCAR_006465' => 'dca', 'DCAR_008159' => 'dca', 'DCAR_012164' => 'dca', 'DCAR_019764' => 'dca', 'Dinv05418' => 'din', 'Dinv10839' => 'din', 'Dinv12521' => 'din', 'Dinv13900' => 'din', 'Dinv29426' => 'din', 'Duzib150G0263' => 'dzi', 'Duzib168G1178' => 'dzi', 'Duzib168G1924' => 'dzi', 'Duzib170G0299' => 'dzi', 'Duzib170G0813' => 'dzi', 'Duzib235G1128' => 'dzi', 'Duzib248G1060' => 'dzi', 'ECA232G1910' => 'eca', 'ECA233G4621' => 'eca', 'ECA238G1216' => 'eca', 'ECA238G1784' => 'eca', 'ECA248G1242' => 'eca', 'EL10Ac8g20071' => 'bvu', 'EL10Ac9g21086' => 'bvu', 'EL10Ac9g22407' => 'bvu', 'EL10Ac9g22412' => 'bvu', 'Eucgr.A01119' => 'egr', 'Eucgr.E04043' => 'egr', 'Eucgr.J00428' => 'egr', 'Eucgr.J00958' => 'egr', 'FAN11G3091' => 'fan', 'FAN11G3651' => 'fan', 'FAN16G2566' => 'fan', 'FAN21G3155' => 'fan', 'FAN21G3400' => 'fan', 'FAN21G3543' => 'fan', 'FAN25G0234' => 'fan', 'FAN25G1422' => 'fan', 'FAN25G3392' => 'fan', 'FvH4_3g01940' => 'fve', 'FvH4_3g29870' => 'fve', 'FvH4_3g33680' => 'fve', 'Glyma.09G004200' => 'gma', 'Glyma.11G151288' => 'gma', 'Glyma.11G189100' => 'gma', 'Glyma.12G072500' => 'gma', 'Glyma.12G085500' => 'gma', 'Glyma.12G181800' => 'gma', 'Glyma.12G193000' => 'gma', 'Glyma.13G309300' => 'gma', 'Glyma.13G319000' => 'gma', 'Glyma.17G012600' => 'gma', 'Gohir.A06G148600' => 'ghi', 'Gohir.A07G115800' => 'ghi', 'Gohir.A08G003600' => 'ghi', 'Gohir.A09G093300' => 'ghi', 'Gohir.A09G105400' => 'ghi', 'Gohir.A09G105500' => 'ghi', 'Gohir.D06G154600' => 'ghi', 'Gohir.D07G120200' => 'ghi', 'Gohir.D08G013900' => 'ghi', 'Gohir.D09G093100' => 'ghi', 'Gohir.D09G102200' => 'ghi', 'Gohir.D09G102300' => 'ghi', 'Gorai.001G129400' => 'gra', 'Gorai.004G008200' => 'gra', 'Gorai.006G109800' => 'gra', 'Gorai.006G119500' => 'gra', 'Gorai.006G121300' => 'gra', 'Gorai.010G180700' => 'gra', 'GSVIVG01012716001' => 'vvi', 'GSVIVG01025118001' => 'vvi', 'GSVIVG01030439001' => 'vvi', 'GSVIVG01031397001' => 'vvi', 'HanXRQChr01g0004201' => 'han', 'HanXRQChr02g0054941' => 'han', 'HanXRQChr05g0141811' => 'han', 'HanXRQChr07g0197751' => 'han', 'HanXRQChr11g0346691' => 'han', 'HanXRQChr13g0396971' => 'han', 'HanXRQChr14g0432951' => 'han', 'HanXRQChr14g0452001' => 'han', 'HanXRQChr15g0496681' => 'han', 'HanXRQChr17g0557491' => 'han', 'HanXRQChr17g0557501' => 'han', 'Haze_06809' => 'cav', 'Haze_12852' => 'cav', 'Haze_15850' => 'cav', 'Haze_23446' => 'cav', 'Haze_23942' => 'cav', 'Haze_23943' => 'cav', 'Hma1.2p1_0091F.1_g046450' => 'hma', 'Hma1.2p1_0128F.1_g059910' => 'hma', 'Hma1.2p1_0249F.1_g102260' => 'hma', 'Hma1.2p1_0453F.1_g156190' => 'hma', 'Hma1.2p1_0695F.1_g204380' => 'hma', 'Hma1.2p1_0749F.1_g212650' => 'hma', 'Hma1.2p1_2156F.1_g315420' => 'hma', 'Hma1.2p1_2686F.1_g326940' => 'hma', 'HPP92_006428' => 'vpl', 'HPP92_012069' => 'vpl', 'HPP92_014129' => 'vpl', 'HPP92_014133' => 'vpl', 'HPP92_017315' => 'vpl', 'HPP92_026445' => 'vpl', 'HPP92_026446' => 'vpl', 'Hund00774' => 'sun', 'Hund07682' => 'sun', 'Hund21413' => 'sun', 'Hund23462' => 'sun', 'Hund23463' => 'sun', 'Lalb_Chr03g0027911' => 'lal', 'Lalb_Chr13g0304271' => 'lal', 'Lalb_Chr19g0137471' => 'lal', 'Lalb_Chr22g0350651' => 'lal', 'Lalb_Chr24g0395151' => 'lal', 'Lj1A1231T40' => 'lonja', 'Lj1A221T48' => 'lonja', 'Lj1C924T12' => 'lonja', 'Lj2C993G6' => 'lonja', 'Lj3g0005790' => 'lja', 'Lj3g0015432' => 'lja', 'Lj3g0017722' => 'lja', 'Lj3g0018497' => 'lja', 'Lj4g0025071' => 'lja', 'Lsat_1_v5_gn_1_129680' => 'lsa', 'Lsat_1_v5_gn_2_25321' => 'lsa', 'Lsat_1_v5_gn_2_95461' => 'lsa', 'Lsat_1_v5_gn_4_159620' => 'lsa', 'Lsat_1_v5_gn_6_41301' => 'lsa', 'Lsat_1_v5_gn_6_74660' => 'lsa', 'Lsat_1_v5_gn_7_11520' => 'lsa', 'Lsat_1_v5_gn_9_67680' => 'lsa', 'Manes.04G008300' => 'mes', 'Manes.04G008400' => 'mes', 'Manes.04G026500' => 'mes', 'Manes.10G135300' => 'mes', 'Manes.11G157300' => 'mes', 'Manes.12G074000' => 'mes', 'Manes.16G006200' => 'mes', 'Manes.17G026400' => 'mes', 'Mapoly0024s0086' => 'mpo', 'Mapoly0024s0087' => 'mpo', 'Mapoly0071s0057' => 'mpo', 'Mapoly0204s0012' => 'mpo', 'MBI04_g37681_MAGBIO' => 'mbi', 'MBI05_g17779_MAGBIO' => 'mbi', 'MBI12_g31184_MAGBIO' => 'mbi', 'MBI17_g11083_MAGBIO' => 'mbi', 'MBI18_g03883_MAGBIO' => 'mbi', 'MBI18_g28940_MAGBIO' => 'mbi', 'MCO01G690' => 'mco', 'MD03G1109900' => 'mdo', 'MD03G1134800' => 'mdo', 'MD05G1348000' => 'mdo', 'MD10G1322400' => 'mdo', 'MD11G1123300' => 'mdo', 'MD11G1157600' => 'mdo', 'Medtr2g084875' => 'mtr', 'Medtr2g088130' => 'mtr', 'Medtr4g055310' => 'mtr', 'Medtr4g061070' => 'mtr', 'Medtr4g132250' => 'mtr', 'MELO3C004795.2' => 'cme', 'MELO3C004797.2' => 'cme', 'MELO3C007396.2' => 'cme', 'MELO3C019277.2' => 'cme', 'MELO3C021449.2' => 'cme', 'MELO3C025736.2' => 'cme', 'Migut.D02175' => 'egut', 'Migut.H01573' => 'egut', 'Migut.M01327' => 'egut', 'Migut.N02513' => 'egut', 'MSTRG.14638' => 'ama', 'MSTRG.18632' => 'ama', 'MSTRG.7203' => 'ama', 'Nitab4.5_0000533g0140' => 'nta', 'Nitab4.5_0000888g0150' => 'nta', 'Nitab4.5_0001453g0040' => 'nta', 'Nitab4.5_0002827g0090' => 'nta', 'Nitab4.5_0003082g0040' => 'nta', 'Nitab4.5_0007799g0040' => 'nta', 'Nitab4.5_0008983g0010' => 'nta', 'Nitab4.5_0009017g0020' => 'nta', 'Nn1g02132' => 'nnu', 'Nn1g03492' => 'nnu', 'Nn1g03493' => 'nnu', 'Nn1g03494' => 'nnu', 'Nn1g07164' => 'nnu', 'Nn1g07291' => 'nnu', 'Nn2g10655' => 'nnu', 'Nn2g11652' => 'nnu', 'Nn2g14008' => 'nnu', 'Nn3g17476' => 'nnu', 'Nn3g17477' => 'nnu', 'Nn4g22370' => 'nnu', 'Nn4g25255' => 'nnu', 'Nn5g27755' => 'nnu', 'Nn6g34260' => 'nnu', 'Nn6g35041' => 'nnu', 'Oeu005924.1' => 'oeu', 'Oeu008383.1' => 'oeu', 'Oeu014928.1' => 'oeu', 'Oeu019889.1' => 'oeu', 'Oeu022271.1' => 'oeu', 'Oeu025271.1' => 'oeu', 'Oeu036302.1' => 'oeu', 'Oeu044100.1' => 'oeu', 'Os01g0528300' => 'osa', 'Os03g0286200' => 'osa', 'Os04g0406600' => 'osa', 'Os07g0512000' => 'osa', 'Os07g0694600' => 'osa', 'Os08g0411000' => 'osa', 'Os09g0565700' => 'osa', 'Os09g0566050' => 'osa', 'Os10g0523700' => 'osa', 'Peaxi162Scf00002g00514' => 'pax', 'Peaxi162Scf00047g01817' => 'pax', 'Peaxi162Scf00114g00001' => 'pax', 'Peaxi162Scf00147g00613' => 'pax', 'Peaxi162Scf00389g00425' => 'pax', 'PGR042G1139' => 'pgr', 'PGR042G3273' => 'pgr', 'PGR102G2180' => 'pgr', 'PGR119G0234' => 'pgr', 'PGR119G0668' => 'pgr', 'PGSC0003DMG400007122' => 'stu', 'PGSC0003DMG400016478' => 'stu', 'PGSC0003DMG400025374' => 'stu', 'PGSC0003DMG400026536' => 'stu', 'Phvul.003G079600' => 'pvu', 'Phvul.005G115600' => 'pvu', 'Phvul.005G127100' => 'pvu', 'Phvul.006G149500' => 'pvu', 'Phvul.006G149600' => 'pvu', 'Phvul.011G071800' => 'pvu', 'Phvul.011G090400' => 'pvu', 'Potri.004G013400' => 'ptr', 'Potri.004G188100' => 'ptr', 'Potri.008G195500' => 'ptr', 'Potri.009G148800' => 'ptr', 'Potri.011G004700' => 'ptr', 'Pp3c17_22810' => 'ppa', 'Pp3c18_4480' => 'ppa', 'Pp3c19_13030' => 'ppa', 'Pp3c1_33620' => 'ppa', 'Pp3c2_9380' => 'ppa', 'PRCOL_00001023' => 'pco', 'Prupe.3G216300' => 'ppe', 'Prupe.4G019500' => 'ppe', 'Prupe.6G092500' => 'ppe', 'Prupe.6G119200' => 'ppe', 'Psat0s1945g0080' => 'psa', 'Psat0s4167g0040' => 'psa', 'Psat1g185800' => 'psa', 'Psat4g006440' => 'psa', 'Psat4g006480' => 'psa', 'Psat4g168120' => 'psa', 'Psat5g255680' => 'psa', 'Psat5g261760' => 'psa', 'Psat7g222120' => 'psa', 'PSO063G7252' => 'pso', 'PSO170G4778' => 'pso', 'PSO210G2249' => 'pso', 'PSO339G2411' => 'pso', 'PSO339G2457' => 'pso', 'PSO339G2854' => 'pso', 'PSO339G4288' => 'pso', 'PSO339G4615' => 'pso', 'PSO384G2796' => 'pso', 'PSO384G2940' => 'pso', 'PSO384G4227' => 'pso', 'PSO478G1425' => 'pso', 'PSO541G3863' => 'pso', 'PSO675G0507' => 'pso', 'PSO782G0338' => 'pso', 'PSO832G0644' => 'pso', 'QL01p013664' => 'qlo', 'QL01p036598' => 'qlo', 'QL05p072984' => 'qlo', 'QL08p005768' => 'qlo', 'QL08p032743' => 'qlo', 'QL93p0073_0439' => 'qlo', 'QL93p0073_0444' => 'qlo', 'RcHm_v2.0_Chr5g0002851' => 'rch', 'RcHm_v2.0_Chr5g0055201' => 'rch', 'RcHm_v2.0_Chr5g0061191' => 'rch', 'RcHm_v2.0_Chr7g0203231' => 'rch', 'Rhsim01G0208100' => 'rsi', 'Rhsim01G0208200' => 'rsi', 'Rhsim02G0106500' => 'rsi', 'Rhsim03G0107900' => 'rsi', 'Rhsim06G0163400' => 'rsi', 'Rhsim13G0105200' => 'rsi', 'Sabra04G0006300' => 'sbr', 'Sabra04G0127000' => 'sbr', 'Sabra08G0148700' => 'sbr', 'Sabra09G0117400' => 'sbr', 'SalBow1G3326' => 'sbo', 'SalBow3G3228' => 'sbo', 'SalBow6G1634' => 'sbo', 'SalBow6G3603' => 'sbo', 'SalBow6G5266' => 'sbo', 'SalBow7G2265' => 'sbo', 'SalBow8G0850' => 'sbo', 'SalBow8G2592' => 'sbo', 'Sc05g0009240' => 'sci', 'Sc12g0002300' => 'sci', 'Sc21g0000100' => 'sci', 'Sc21g0004720' => 'sci', 'Sed0002949' => 'sed', 'Sed0004114' => 'sed', 'Sed0004306' => 'sed', 'Sed0006172' => 'sed', 'Sed0008413' => 'sed', 'Sed0013809' => 'sed', 'Sed0019556' => 'sed', 'SEGI_03570' => 'sgi', 'SEGI_07859' => 'sgi', 'SEGI_15042' => 'sgi', 'SEGI_16263' => 'sgi', 'SEGI_16552' => 'sgi', 'SEGI_24331' => 'sgi', 'SEGI_27316' => 'sgi', 'SEGI_29521' => 'sgi', 'SEGI_41342' => 'sgi', 'SGA_v2.0_scaffold27G11617' => 'sas', 'SGA_v2.0_scaffold316G48428' => 'sas', 'SGA_v2.0_scaffold49G18261' => 'sas', 'SGA_v2.0_scaffold7G03831' => 'sas', 'SGA_v2.0_scaffold93G28359' => 'sas', 'SHI02210' => 'shi', 'SHI06028' => 'shi', 'SHI06321' => 'shi', 'SMO111G0012' => 'smo', 'SMO228G0080' => 'smo', 'SMO356G0756' => 'smo', 'Solyc02g080620.3' => 'sly', 'Solyc06g074530.1' => 'sly', 'Solyc11g066890.1' => 'sly', 'Solyc11g072520.3' => 'sly', 'Sopen02g025330' => 'spe', 'Sopen06g031000' => 'spe', 'Sopen09g008240' => 'spe', 'Sopen09g025210' => 'spe', 'Sopen11g026600' => 'spe', 'Sopen11g030170' => 'spe', 'Sp1g10420' => 'spa', 'Sp3g06570' => 'spa', 'Sp4g10660' => 'spa', 'Sp5g16460' => 'spa', 'Sp6g22710' => 'spa', 'TAR365G0112' => 'tar', 'TAR369G0717' => 'tar', 'TAR374G0976' => 'tar', 'TAR623G1128' => 'tar', 'TAR626G1937' => 'tar', 'TAR627G0123' => 'tar', 'TAR628G0305' => 'tar', 'TAR636G1176' => 'tar', 'TAR636G2442' => 'tar', 'THA.LOC104800556' => 'tha', 'THA.LOC104809501' => 'tha', 'THA.LOC104815126' => 'tha', 'THA.LOC104815732' => 'tha', 'THA.LOC104823528' => 'tha', 'Thecc.02G365600' => 'tca', 'Thecc.06G222300' => 'tca', 'Thecc.09G261800' => 'tca', 'Thecc.09G291400' => 'tca', 'Thhalv10003028m.g' => 'esa', 'Thhalv10007886m.g' => 'esa', 'Thhalv10016085m.g' => 'esa', 'Thhalv10016681m.g' => 'esa', 'Thhalv10020951m.g' => 'esa', 'TPR.G15598' => 'tpr', 'TPR.G29305' => 'tpr', 'TPR.G32395' => 'tpr', 'TPR.G36998' => 'tpr', 'TPR.G4227' => 'tpr', 'TWI18G1433' => 'twi', 'TWI31G0755' => 'twi', 'TWI38G0912' => 'twi', 'TWI75G1097' => 'twi', 'TWI75G1619' => 'twi', 'TWI79G1336' => 'twi', 'unitig_0.g943' => 'ugi', 'unitig_0.g944' => 'ugi', 'unitig_22.g6646' => 'ugi', 'unitig_37.g12681' => 'ugi', 'unitig_8.g3290' => 'ugi', 'vmacro03278' => 'vma', 'vmacro12197' => 'vma', 'vmacro14478' => 'vma', 'vmacro15787' => 'vma', 'vmacro15789' => 'vma', 'vmacro15790' => 'vma', 'vmacro15806' => 'vma', 'vmacro22907' => 'vma', 'vmacro22908' => 'vma', 'vmacro22909' => 'vma', 'vmacro23108' => 'vma', 'VMungo0540G0540' => 'vmu', 'VMungo0540G2468' => 'vmu', 'VMungo1080G0390' => 'vmu', 'VMungo1080G1165' => 'vmu', 'VMungo1127G0170' => 'vmu', 'VMungo1127G2099' => 'vmu', 'VMungo1215G3013' => 'vmu', 'Zm00001eb013110' => 'zma', 'Zm00001eb084260' => 'zma', 'Zm00001eb096110' => 'zma', 'Zm00001eb217510' => 'zma', 'Zm00001eb322550' => 'zma', 'Zm00001eb390770' => 'zma', 'Zm00001eb397170' => 'zma', 'Zm00001eb404610' => 'zma', 'Zm00001eb421790' => 'zma' ), 'gf_id' => 'HOM05D000911', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000911' ), 'data_identifier' => 'HOM05D000911', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000911', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27780' => 'bna', 'A03p35380' => 'bna', 'A04p21160' => 'bna', 'A05p40570' => 'bna', 'A06p26900' => 'bna', 'A08p33230' => 'bna', 'A09p65960' => 'bna', 'A10p18290' => 'bna', 'Aa31LG1G12990' => 'aar', 'Aa31LG1G2980' => 'aar', 'Aa31LG4G14320' => 'aar', 'Aa31LG7G11800' => 'aar', 'Aa31sc36G50' => 'aar', 'Aa31sc36G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3721' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5459' => 'aag', 'Actinidia03028' => 'ach', 'Actinidia03753' => 'ach', 'Actinidia04187' => 'ach', 'Actinidia05509' => 'ach', 'Actinidia24180' => 'ach', 'Actinidia26906' => 'ach', 'Actinidia37097' => 'ach', 'Actinidia38249' => 'ach', 'Ah.01g003470' => 'amhyb', 'Ah.01g004580' => 'amhyb', 'Ah.01g014850' => 'amhyb', 'Ah.01g016830' => 'amhyb', 'Ah.14g088000' => 'amhyb', 'AL1G22980' => 'aly', 'AL3G18990' => 'aly', 'AL4G22440' => 'aly', 'AL4G33180' => 'aly', 'AL5G22920' => 'aly', 'AL6G33660' => 'aly', 'AL8G20720' => 'aly', 'Aqoxy1G00935' => 'aox', 'Aqoxy1G02094' => 'aox', 'Aqoxy2G01239' => 'aox', 'Aqoxy4G01870' => 'aox', 'Aqoxy7G00450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.36ZVTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71EM27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5D6C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH3WRE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3NCM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RIM768' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YB5YRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z36GDV' => 'arhy', 'AT1G08250' => 'ath', 'AT1G11790' => 'ath', 'AT2G27820' => 'ath', 'AT3G07630' => 'ath', 'AT3G44720' => 'ath', 'AT5G22630' => 'ath', 'ATR0693G304' => 'atr', 'ATR0794G109' => 'atr', 'ATR0820G120' => 'atr', 'ATR1159G064' => 'atr', 'Atru.chr10.2239' => 'acertr', 'Atru.chr3.3371' => 'acertr', 'Atru.chr6.3202' => 'acertr', 'AUR62006499' => 'cqu', 'AUR62012718' => 'cqu', 'AUR62021938' => 'cqu', 'AUR62023932' => 'cqu', 'AUR62025034' => 'cqu', 'AUR62025035' => 'cqu', 'AUR62038307' => 'cqu', 'AUR62043466' => 'cqu', 'BcaB02g10748' => 'bca', 'BcaB03g13231' => 'bca', 'BcaB03g14689' => 'bca', 'BcaB05g22716' => 'bca', 'BcaB06g28172' => 'bca', 'BcaB08g36413' => 'bca', 'BcaC01g02186' => 'bca', 'BcaC01g04272' => 'bca', 'BcaC02g08080' => 'bca', 'BcaC02g08227' => 'bca', 'BcaC03g13901' => 'bca', 'BcaC04g19593' => 'bca', 'BcaC04g20874' => 'bca', 'BcaC05g29557' => 'bca', 'BcaC06g35505' => 'bca', 'BcaC07g41954' => 'bca', 'BcaC07g41955' => 'bca', 'BcaC07g41956' => 'bca', 'BcaC07g42519' => 'bca', 'BcaC07g42520' => 'bca', 'BcaC07g42523' => 'bca', 'BcaC07g42524' => 'bca', 'BcaC07g42525' => 'bca', 'BcaC08g47480' => 'bca', 'BcaC08g47481' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00530' => 'bna', 'BolC2t07178H' => 'bol', 'BolC3t16567H' => 'bol', 'BolC4t27234H' => 'bol', 'BolC5t29728H' => 'bol', 'BolC5t34622H' => 'bol', 'BolC6t40321H' => 'bol', 'BolC7t42028H' => 'bol', 'BolC8t49125H' => 'bol', 'BolC8t52538H' => 'bol', 'BolC8t52539H' => 'bol', 'BolC9t56681H' => 'bol', 'BolC9t58266H' => 'bol', 'BolSC21t60294H' => 'bol', 'BraA02t05670Z' => 'bra', 'BraA03t12716Z' => 'bra', 'BraA04t17685Z' => 'bra', 'BraA05t22788Z' => 'bra', 'BraA06t24032Z' => 'bra', 'BraA06t25625Z' => 'bra', 'BraA07t27930Z' => 'bra', 'BraA08t35242Z' => 'bra', 'BraA09t38609Z' => 'bra', 'BraA10t43905Z' => 'bra', 'C02p11060' => 'bna', 'C03p42990' => 'bna', 'C03p67310' => 'bna', 'C04p56990' => 'bna', 'C04p58660' => 'bna', 'C05p09890' => 'bna', 'C05p59680' => 'bna', 'C06p19830' => 'bna', 'C06p53040' => 'bna', 'C07p15230' => 'bna', 'C08p50070' => 'bna', 'C08p50090' => 'bna', 'C09p38330' => 'bna', 'C09p53940' => 'bna', 'CAN.G1014.1' => 'can', 'CAN.G644.30' => 'can', 'CAN.G84.47' => 'can', 'CAN.G919.8' => 'can', 'CANSAT54G0113' => 'cansat', 'CANSAT54G1286' => 'cansat', 'CANSAT64G1020' => 'cansat', 'CARHR008080' => 'chi', 'CARHR008090' => 'chi', 'CARHR012130' => 'chi', 'CARHR038390' => 'chi', 'CARHR082330' => 'chi', 'CARHR120520' => 'chi', 'CARHR151470' => 'chi', 'CARHR190950' => 'chi', 'Carub.0001s0760' => 'cru', 'Carub.0001s1146' => 'cru', 'Carub.0003s0721' => 'cru', 'Carub.0004s0858' => 'cru', 'Carub.0005s1040' => 'cru', 'Carub.0006s2035' => 'cru', 'Carub.0015s0005' => 'cru', 'Ca_01607_v3' => 'car', 'Ca_01677_v3' => 'car', 'Ca_06087_v3' => 'car', 'Ca_19238_v3' => 'car', 'Ca_19373_v3' => 'car', 'Ca_21079_v3' => 'car', 'CBR_g54016' => 'cbr', 'CBR_g54018' => 'cbr', 'CBR_g54020' => 'cbr', 'Cc01_g09780' => 'ccan', 'Cc01_g11680' => 'ccan', 'Cc02_g15610' => 'ccan', 'Cc05_g04350' => 'ccan', 'Cc09_g01580' => 'ccan', 'CDE01G0795' => 'cde', 'CDE02G2024' => 'cde', 'CDE02G2260' => 'cde', 'CDE02G4561' => 'cde', 'CDE05G2733' => 'cde', 'CDE05G3422' => 'cde', 'CDE06G2003' => 'cde', 'CDE08G0576' => 'cde', 'CDE09G0048' => 'cde', 'CDE11G0805' => 'cde', 'Cfa003644' => 'cfa', 'Cfa006290' => 'cfa', 'Cfa010080' => 'cfa', 'Cfa011376' => 'cfa', 'Cfa011576' => 'cfa', 'Cfa011577' => 'cfa', 'Cfa014389' => 'cfa', 'Ciclev10006044m.g' => 'ccl', 'Ciclev10006954m.g' => 'ccl', 'Ciclev10015131m.g' => 'ccl', 'Ciclev10015580m.g' => 'ccl', 'Ciclev10028359m.g' => 'ccl', 'Ciclev10028573m.g' => 'ccl', 'CiPaw.03G159300' => 'cil', 'CiPaw.04G115100' => 'cil', 'CiPaw.09G092800' => 'cil', 'CiPaw.10G071800' => 'cil', 'CiPaw.13G105800' => 'cil', 'CiPaw.13G141000' => 'cil', 'CiPaw.14G103400' => 'cil', 'ClCG01G012700' => 'cla', 'ClCG01G012720' => 'cla', 'ClCG01G021920' => 'cla', 'ClCG02G008870' => 'cla', 'ClCG02G020840' => 'cla', 'ClCG02G021930' => 'cla', 'COL.COLO4_19302' => 'col', 'COL.COLO4_25262' => 'col', 'COL.COLO4_31788' => 'col', 'Cpa.g.c34684' => 'cpa', 'Cpa.g.c36520.1' => 'cpa', 'Cpa.g.c45626' => 'cpa', 'Cpa.g.sc121.17' => 'cpa', 'Cpa.g.sc13.22' => 'cpa', 'Cpa.g.sc87.88' => 'cpa', 'Cre06.g261800' => 'cre', 'CsaV3_1G014500' => 'csa', 'CsaV3_1G014510' => 'csa', 'CsaV3_2G034880' => 'csa', 'CsaV3_6G014760' => 'csa', 'CsaV3_6G021500' => 'csa', 'CsaV3_6G048980' => 'csa', 'CSS0002511' => 'camsi', 'CSS0007556' => 'camsi', 'CSS0008532' => 'camsi', 'CSS0009709' => 'camsi', 'CSS0010486' => 'camsi', 'CSS0016768' => 'camsi', 'CSS0023512' => 'camsi', 'CSS0025341' => 'camsi', 'CSS0027999' => 'camsi', 'CSS0028944' => 'camsi', 'CSS0032292' => 'camsi', 'CSS0032464' => 'camsi', 'CSS0037153' => 'camsi', 'CSS0039256' => 'camsi', 'CSS0048392' => 'camsi', 'CSS0050458' => 'camsi', 'DCAR_004224' => 'dca', 'DCAR_006147' => 'dca', 'DCAR_006465' => 'dca', 'DCAR_008159' => 'dca', 'DCAR_012164' => 'dca', 'DCAR_019764' => 'dca', 'Dinv05418' => 'din', 'Dinv10839' => 'din', 'Dinv12521' => 'din', 'Dinv13900' => 'din', 'Dinv29426' => 'din', 'Duzib150G0263' => 'dzi', 'Duzib168G1178' => 'dzi', 'Duzib168G1924' => 'dzi', 'Duzib170G0299' => 'dzi', 'Duzib170G0813' => 'dzi', 'Duzib235G1128' => 'dzi', 'Duzib248G1060' => 'dzi', 'ECA232G1910' => 'eca', 'ECA233G4621' => 'eca', 'ECA238G1216' => 'eca', 'ECA238G1784' => 'eca', 'ECA248G1242' => 'eca', 'EL10Ac8g20071' => 'bvu', 'EL10Ac9g21086' => 'bvu', 'EL10Ac9g22407' => 'bvu', 'EL10Ac9g22412' => 'bvu', 'Eucgr.A01119' => 'egr', 'Eucgr.E04043' => 'egr', 'Eucgr.J00428' => 'egr', 'Eucgr.J00958' => 'egr', 'FAN11G3091' => 'fan', 'FAN11G3651' => 'fan', 'FAN16G2566' => 'fan', 'FAN21G3155' => 'fan', 'FAN21G3400' => 'fan', 'FAN21G3543' => 'fan', 'FAN25G0234' => 'fan', 'FAN25G1422' => 'fan', 'FAN25G3392' => 'fan', 'FvH4_3g01940' => 'fve', 'FvH4_3g29870' => 'fve', 'FvH4_3g33680' => 'fve', 'Glyma.09G004200' => 'gma', 'Glyma.11G151288' => 'gma', 'Glyma.11G189100' => 'gma', 'Glyma.12G072500' => 'gma', 'Glyma.12G085500' => 'gma', 'Glyma.12G181800' => 'gma', 'Glyma.12G193000' => 'gma', 'Glyma.13G309300' => 'gma', 'Glyma.13G319000' => 'gma', 'Glyma.17G012600' => 'gma', 'Gohir.A06G148600' => 'ghi', 'Gohir.A07G115800' => 'ghi', 'Gohir.A08G003600' => 'ghi', 'Gohir.A09G093300' => 'ghi', 'Gohir.A09G105400' => 'ghi', 'Gohir.A09G105500' => 'ghi', 'Gohir.D06G154600' => 'ghi', 'Gohir.D07G120200' => 'ghi', 'Gohir.D08G013900' => 'ghi', 'Gohir.D09G093100' => 'ghi', 'Gohir.D09G102200' => 'ghi', 'Gohir.D09G102300' => 'ghi', 'Gorai.001G129400' => 'gra', 'Gorai.004G008200' => 'gra', 'Gorai.006G109800' => 'gra', 'Gorai.006G119500' => 'gra', 'Gorai.006G121300' => 'gra', 'Gorai.010G180700' => 'gra', 'GSVIVG01012716001' => 'vvi', 'GSVIVG01025118001' => 'vvi', 'GSVIVG01030439001' => 'vvi', 'GSVIVG01031397001' => 'vvi', 'HanXRQChr01g0004201' => 'han', 'HanXRQChr02g0054941' => 'han', 'HanXRQChr05g0141811' => 'han', 'HanXRQChr07g0197751' => 'han', 'HanXRQChr11g0346691' => 'han', 'HanXRQChr13g0396971' => 'han', 'HanXRQChr14g0432951' => 'han', 'HanXRQChr14g0452001' => 'han', 'HanXRQChr15g0496681' => 'han', 'HanXRQChr17g0557491' => 'han', 'HanXRQChr17g0557501' => 'han', 'Haze_06809' => 'cav', 'Haze_12852' => 'cav', 'Haze_15850' => 'cav', 'Haze_23446' => 'cav', 'Haze_23942' => 'cav', 'Haze_23943' => 'cav', 'Hma1.2p1_0091F.1_g046450' => 'hma', 'Hma1.2p1_0128F.1_g059910' => 'hma', 'Hma1.2p1_0249F.1_g102260' => 'hma', 'Hma1.2p1_0453F.1_g156190' => 'hma', 'Hma1.2p1_0695F.1_g204380' => 'hma', 'Hma1.2p1_0749F.1_g212650' => 'hma', 'Hma1.2p1_2156F.1_g315420' => 'hma', 'Hma1.2p1_2686F.1_g326940' => 'hma', 'HPP92_006428' => 'vpl', 'HPP92_012069' => 'vpl', 'HPP92_014129' => 'vpl', 'HPP92_014133' => 'vpl', 'HPP92_017315' => 'vpl', 'HPP92_026445' => 'vpl', 'HPP92_026446' => 'vpl', 'Hund00774' => 'sun', 'Hund07682' => 'sun', 'Hund21413' => 'sun', 'Hund23462' => 'sun', 'Hund23463' => 'sun', 'Lalb_Chr03g0027911' => 'lal', 'Lalb_Chr13g0304271' => 'lal', 'Lalb_Chr19g0137471' => 'lal', 'Lalb_Chr22g0350651' => 'lal', 'Lalb_Chr24g0395151' => 'lal', 'Lj1A1231T40' => 'lonja', 'Lj1A221T48' => 'lonja', 'Lj1C924T12' => 'lonja', 'Lj2C993G6' => 'lonja', 'Lj3g0005790' => 'lja', 'Lj3g0015432' => 'lja', 'Lj3g0017722' => 'lja', 'Lj3g0018497' => 'lja', 'Lj4g0025071' => 'lja', 'Lsat_1_v5_gn_1_129680' => 'lsa', 'Lsat_1_v5_gn_2_25321' => 'lsa', 'Lsat_1_v5_gn_2_95461' => 'lsa', 'Lsat_1_v5_gn_4_159620' => 'lsa', 'Lsat_1_v5_gn_6_41301' => 'lsa', 'Lsat_1_v5_gn_6_74660' => 'lsa', 'Lsat_1_v5_gn_7_11520' => 'lsa', 'Lsat_1_v5_gn_9_67680' => 'lsa', 'Manes.04G008300' => 'mes', 'Manes.04G008400' => 'mes', 'Manes.04G026500' => 'mes', 'Manes.10G135300' => 'mes', 'Manes.11G157300' => 'mes', 'Manes.12G074000' => 'mes', 'Manes.16G006200' => 'mes', 'Manes.17G026400' => 'mes', 'Mapoly0024s0086' => 'mpo', 'Mapoly0024s0087' => 'mpo', 'Mapoly0071s0057' => 'mpo', 'Mapoly0204s0012' => 'mpo', 'MBI04_g37681_MAGBIO' => 'mbi', 'MBI05_g17779_MAGBIO' => 'mbi', 'MBI12_g31184_MAGBIO' => 'mbi', 'MBI17_g11083_MAGBIO' => 'mbi', 'MBI18_g03883_MAGBIO' => 'mbi', 'MBI18_g28940_MAGBIO' => 'mbi', 'MCO01G690' => 'mco', 'MD03G1109900' => 'mdo', 'MD03G1134800' => 'mdo', 'MD05G1348000' => 'mdo', 'MD10G1322400' => 'mdo', 'MD11G1123300' => 'mdo', 'MD11G1157600' => 'mdo', 'Medtr2g084875' => 'mtr', 'Medtr2g088130' => 'mtr', 'Medtr4g055310' => 'mtr', 'Medtr4g061070' => 'mtr', 'Medtr4g132250' => 'mtr', 'MELO3C004795.2' => 'cme', 'MELO3C004797.2' => 'cme', 'MELO3C007396.2' => 'cme', 'MELO3C019277.2' => 'cme', 'MELO3C021449.2' => 'cme', 'MELO3C025736.2' => 'cme', 'Migut.D02175' => 'egut', 'Migut.H01573' => 'egut', 'Migut.M01327' => 'egut', 'Migut.N02513' => 'egut', 'MSTRG.14638' => 'ama', 'MSTRG.18632' => 'ama', 'MSTRG.7203' => 'ama', 'Nitab4.5_0000533g0140' => 'nta', 'Nitab4.5_0000888g0150' => 'nta', 'Nitab4.5_0001453g0040' => 'nta', 'Nitab4.5_0002827g0090' => 'nta', 'Nitab4.5_0003082g0040' => 'nta', 'Nitab4.5_0007799g0040' => 'nta', 'Nitab4.5_0008983g0010' => 'nta', 'Nitab4.5_0009017g0020' => 'nta', 'Nn1g02132' => 'nnu', 'Nn1g03492' => 'nnu', 'Nn1g03493' => 'nnu', 'Nn1g03494' => 'nnu', 'Nn1g07164' => 'nnu', 'Nn1g07291' => 'nnu', 'Nn2g10655' => 'nnu', 'Nn2g11652' => 'nnu', 'Nn2g14008' => 'nnu', 'Nn3g17476' => 'nnu', 'Nn3g17477' => 'nnu', 'Nn4g22370' => 'nnu', 'Nn4g25255' => 'nnu', 'Nn5g27755' => 'nnu', 'Nn6g34260' => 'nnu', 'Nn6g35041' => 'nnu', 'Oeu005924.1' => 'oeu', 'Oeu008383.1' => 'oeu', 'Oeu014928.1' => 'oeu', 'Oeu019889.1' => 'oeu', 'Oeu022271.1' => 'oeu', 'Oeu025271.1' => 'oeu', 'Oeu036302.1' => 'oeu', 'Oeu044100.1' => 'oeu', 'Os01g0528300' => 'osa', 'Os03g0286200' => 'osa', 'Os04g0406600' => 'osa', 'Os07g0512000' => 'osa', 'Os07g0694600' => 'osa', 'Os08g0411000' => 'osa', 'Os09g0565700' => 'osa', 'Os09g0566050' => 'osa', 'Os10g0523700' => 'osa', 'Peaxi162Scf00002g00514' => 'pax', 'Peaxi162Scf00047g01817' => 'pax', 'Peaxi162Scf00114g00001' => 'pax', 'Peaxi162Scf00147g00613' => 'pax', 'Peaxi162Scf00389g00425' => 'pax', 'PGR042G1139' => 'pgr', 'PGR042G3273' => 'pgr', 'PGR102G2180' => 'pgr', 'PGR119G0234' => 'pgr', 'PGR119G0668' => 'pgr', 'PGSC0003DMG400007122' => 'stu', 'PGSC0003DMG400016478' => 'stu', 'PGSC0003DMG400025374' => 'stu', 'PGSC0003DMG400026536' => 'stu', 'Phvul.003G079600' => 'pvu', 'Phvul.005G115600' => 'pvu', 'Phvul.005G127100' => 'pvu', 'Phvul.006G149500' => 'pvu', 'Phvul.006G149600' => 'pvu', 'Phvul.011G071800' => 'pvu', 'Phvul.011G090400' => 'pvu', 'Potri.004G013400' => 'ptr', 'Potri.004G188100' => 'ptr', 'Potri.008G195500' => 'ptr', 'Potri.009G148800' => 'ptr', 'Potri.011G004700' => 'ptr', 'Pp3c17_22810' => 'ppa', 'Pp3c18_4480' => 'ppa', 'Pp3c19_13030' => 'ppa', 'Pp3c1_33620' => 'ppa', 'Pp3c2_9380' => 'ppa', 'PRCOL_00001023' => 'pco', 'Prupe.3G216300' => 'ppe', 'Prupe.4G019500' => 'ppe', 'Prupe.6G092500' => 'ppe', 'Prupe.6G119200' => 'ppe', 'Psat0s1945g0080' => 'psa', 'Psat0s4167g0040' => 'psa', 'Psat1g185800' => 'psa', 'Psat4g006440' => 'psa', 'Psat4g006480' => 'psa', 'Psat4g168120' => 'psa', 'Psat5g255680' => 'psa', 'Psat5g261760' => 'psa', 'Psat7g222120' => 'psa', 'PSO063G7252' => 'pso', 'PSO170G4778' => 'pso', 'PSO210G2249' => 'pso', 'PSO339G2411' => 'pso', 'PSO339G2457' => 'pso', 'PSO339G2854' => 'pso', 'PSO339G4288' => 'pso', 'PSO339G4615' => 'pso', 'PSO384G2796' => 'pso', 'PSO384G2940' => 'pso', 'PSO384G4227' => 'pso', 'PSO478G1425' => 'pso', 'PSO541G3863' => 'pso', 'PSO675G0507' => 'pso', 'PSO782G0338' => 'pso', 'PSO832G0644' => 'pso', 'QL01p013664' => 'qlo', 'QL01p036598' => 'qlo', 'QL05p072984' => 'qlo', 'QL08p005768' => 'qlo', 'QL08p032743' => 'qlo', 'QL93p0073_0439' => 'qlo', 'QL93p0073_0444' => 'qlo', 'RcHm_v2.0_Chr5g0002851' => 'rch', 'RcHm_v2.0_Chr5g0055201' => 'rch', 'RcHm_v2.0_Chr5g0061191' => 'rch', 'RcHm_v2.0_Chr7g0203231' => 'rch', 'Rhsim01G0208100' => 'rsi', 'Rhsim01G0208200' => 'rsi', 'Rhsim02G0106500' => 'rsi', 'Rhsim03G0107900' => 'rsi', 'Rhsim06G0163400' => 'rsi', 'Rhsim13G0105200' => 'rsi', 'Sabra04G0006300' => 'sbr', 'Sabra04G0127000' => 'sbr', 'Sabra08G0148700' => 'sbr', 'Sabra09G0117400' => 'sbr', 'SalBow1G3326' => 'sbo', 'SalBow3G3228' => 'sbo', 'SalBow6G1634' => 'sbo', 'SalBow6G3603' => 'sbo', 'SalBow6G5266' => 'sbo', 'SalBow7G2265' => 'sbo', 'SalBow8G0850' => 'sbo', 'SalBow8G2592' => 'sbo', 'Sc05g0009240' => 'sci', 'Sc12g0002300' => 'sci', 'Sc21g0000100' => 'sci', 'Sc21g0004720' => 'sci', 'Sed0002949' => 'sed', 'Sed0004114' => 'sed', 'Sed0004306' => 'sed', 'Sed0006172' => 'sed', 'Sed0008413' => 'sed', 'Sed0013809' => 'sed', 'Sed0019556' => 'sed', 'SEGI_03570' => 'sgi', 'SEGI_07859' => 'sgi', 'SEGI_15042' => 'sgi', 'SEGI_16263' => 'sgi', 'SEGI_16552' => 'sgi', 'SEGI_24331' => 'sgi', 'SEGI_27316' => 'sgi', 'SEGI_29521' => 'sgi', 'SEGI_41342' => 'sgi', 'SGA_v2.0_scaffold27G11617' => 'sas', 'SGA_v2.0_scaffold316G48428' => 'sas', 'SGA_v2.0_scaffold49G18261' => 'sas', 'SGA_v2.0_scaffold7G03831' => 'sas', 'SGA_v2.0_scaffold93G28359' => 'sas', 'SHI02210' => 'shi', 'SHI06028' => 'shi', 'SHI06321' => 'shi', 'SMO111G0012' => 'smo', 'SMO228G0080' => 'smo', 'SMO356G0756' => 'smo', 'Solyc02g080620.3' => 'sly', 'Solyc06g074530.1' => 'sly', 'Solyc11g066890.1' => 'sly', 'Solyc11g072520.3' => 'sly', 'Sopen02g025330' => 'spe', 'Sopen06g031000' => 'spe', 'Sopen09g008240' => 'spe', 'Sopen09g025210' => 'spe', 'Sopen11g026600' => 'spe', 'Sopen11g030170' => 'spe', 'Sp1g10420' => 'spa', 'Sp3g06570' => 'spa', 'Sp4g10660' => 'spa', 'Sp5g16460' => 'spa', 'Sp6g22710' => 'spa', 'TAR365G0112' => 'tar', 'TAR369G0717' => 'tar', 'TAR374G0976' => 'tar', 'TAR623G1128' => 'tar', 'TAR626G1937' => 'tar', 'TAR627G0123' => 'tar', 'TAR628G0305' => 'tar', 'TAR636G1176' => 'tar', 'TAR636G2442' => 'tar', 'THA.LOC104800556' => 'tha', 'THA.LOC104809501' => 'tha', 'THA.LOC104815126' => 'tha', 'THA.LOC104815732' => 'tha', 'THA.LOC104823528' => 'tha', 'Thecc.02G365600' => 'tca', 'Thecc.06G222300' => 'tca', 'Thecc.09G261800' => 'tca', 'Thecc.09G291400' => 'tca', 'Thhalv10003028m.g' => 'esa', 'Thhalv10007886m.g' => 'esa', 'Thhalv10016085m.g' => 'esa', 'Thhalv10016681m.g' => 'esa', 'Thhalv10020951m.g' => 'esa', 'TPR.G15598' => 'tpr', 'TPR.G29305' => 'tpr', 'TPR.G32395' => 'tpr', 'TPR.G36998' => 'tpr', 'TPR.G4227' => 'tpr', 'TWI18G1433' => 'twi', 'TWI31G0755' => 'twi', 'TWI38G0912' => 'twi', 'TWI75G1097' => 'twi', 'TWI75G1619' => 'twi', 'TWI79G1336' => 'twi', 'unitig_0.g943' => 'ugi', 'unitig_0.g944' => 'ugi', 'unitig_22.g6646' => 'ugi', 'unitig_37.g12681' => 'ugi', 'unitig_8.g3290' => 'ugi', 'vmacro03278' => 'vma', 'vmacro12197' => 'vma', 'vmacro14478' => 'vma', 'vmacro15787' => 'vma', 'vmacro15789' => 'vma', 'vmacro15790' => 'vma', 'vmacro15806' => 'vma', 'vmacro22907' => 'vma', 'vmacro22908' => 'vma', 'vmacro22909' => 'vma', 'vmacro23108' => 'vma', 'VMungo0540G0540' => 'vmu', 'VMungo0540G2468' => 'vmu', 'VMungo1080G0390' => 'vmu', 'VMungo1080G1165' => 'vmu', 'VMungo1127G0170' => 'vmu', 'VMungo1127G2099' => 'vmu', 'VMungo1215G3013' => 'vmu', 'Zm00001eb013110' => 'zma', 'Zm00001eb084260' => 'zma', 'Zm00001eb096110' => 'zma', 'Zm00001eb217510' => 'zma', 'Zm00001eb322550' => 'zma', 'Zm00001eb390770' => 'zma', 'Zm00001eb397170' => 'zma', 'Zm00001eb404610' => 'zma', 'Zm00001eb421790' => 'zma' ) $gf_id = 'HOM05D000911' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000911' ) $data_identifier = 'HOM05D000911' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 16, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 5, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 6, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 8, 'nnu' => (int) 16, 'oeu' => (int) 8, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 5, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 16, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421790' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000911', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27780' => 'bna', 'A03p35380' => 'bna', 'A04p21160' => 'bna', 'A05p40570' => 'bna', 'A06p26900' => 'bna', 'A08p33230' => 'bna', 'A09p65960' => 'bna', 'A10p18290' => 'bna', 'Aa31LG1G12990' => 'aar', 'Aa31LG1G2980' => 'aar', 'Aa31LG4G14320' => 'aar', 'Aa31LG7G11800' => 'aar', 'Aa31sc36G50' => 'aar', 'Aa31sc36G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3721' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5459' => 'aag', 'Actinidia03028' => 'ach', 'Actinidia03753' => 'ach', 'Actinidia04187' => 'ach', 'Actinidia05509' => 'ach', 'Actinidia24180' => 'ach', 'Actinidia26906' => 'ach', 'Actinidia37097' => 'ach', 'Actinidia38249' => 'ach', 'Ah.01g003470' => 'amhyb', 'Ah.01g004580' => 'amhyb', 'Ah.01g014850' => 'amhyb', 'Ah.01g016830' => 'amhyb', 'Ah.14g088000' => 'amhyb', 'AL1G22980' => 'aly', 'AL3G18990' => 'aly', 'AL4G22440' => 'aly', 'AL4G33180' => 'aly', 'AL5G22920' => 'aly', 'AL6G33660' => 'aly', 'AL8G20720' => 'aly', 'Aqoxy1G00935' => 'aox', 'Aqoxy1G02094' => 'aox', 'Aqoxy2G01239' => 'aox', 'Aqoxy4G01870' => 'aox', 'Aqoxy7G00450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.36ZVTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71EM27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5D6C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH3WRE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3NCM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RIM768' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YB5YRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z36GDV' => 'arhy', 'AT1G08250' => 'ath', 'AT1G11790' => 'ath', 'AT2G27820' => 'ath', 'AT3G07630' => 'ath', 'AT3G44720' => 'ath', 'AT5G22630' => 'ath', 'ATR0693G304' => 'atr', 'ATR0794G109' => 'atr', 'ATR0820G120' => 'atr', 'ATR1159G064' => 'atr', 'Atru.chr10.2239' => 'acertr', 'Atru.chr3.3371' => 'acertr', 'Atru.chr6.3202' => 'acertr', 'AUR62006499' => 'cqu', 'AUR62012718' => 'cqu', 'AUR62021938' => 'cqu', 'AUR62023932' => 'cqu', 'AUR62025034' => 'cqu', 'AUR62025035' => 'cqu', 'AUR62038307' => 'cqu', 'AUR62043466' => 'cqu', 'BcaB02g10748' => 'bca', 'BcaB03g13231' => 'bca', 'BcaB03g14689' => 'bca', 'BcaB05g22716' => 'bca', 'BcaB06g28172' => 'bca', 'BcaB08g36413' => 'bca', 'BcaC01g02186' => 'bca', 'BcaC01g04272' => 'bca', 'BcaC02g08080' => 'bca', 'BcaC02g08227' => 'bca', 'BcaC03g13901' => 'bca', 'BcaC04g19593' => 'bca', 'BcaC04g20874' => 'bca', 'BcaC05g29557' => 'bca', 'BcaC06g35505' => 'bca', 'BcaC07g41954' => 'bca', 'BcaC07g41955' => 'bca', 'BcaC07g41956' => 'bca', 'BcaC07g42519' => 'bca', 'BcaC07g42520' => 'bca', 'BcaC07g42523' => 'bca', 'BcaC07g42524' => 'bca', 'BcaC07g42525' => 'bca', 'BcaC08g47480' => 'bca', 'BcaC08g47481' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00530' => 'bna', 'BolC2t07178H' => 'bol', 'BolC3t16567H' => 'bol', 'BolC4t27234H' => 'bol', 'BolC5t29728H' => 'bol', 'BolC5t34622H' => 'bol', 'BolC6t40321H' => 'bol', 'BolC7t42028H' => 'bol', 'BolC8t49125H' => 'bol', 'BolC8t52538H' => 'bol', 'BolC8t52539H' => 'bol', 'BolC9t56681H' => 'bol', 'BolC9t58266H' => 'bol', 'BolSC21t60294H' => 'bol', 'BraA02t05670Z' => 'bra', 'BraA03t12716Z' => 'bra', 'BraA04t17685Z' => 'bra', 'BraA05t22788Z' => 'bra', 'BraA06t24032Z' => 'bra', 'BraA06t25625Z' => 'bra', 'BraA07t27930Z' => 'bra', 'BraA08t35242Z' => 'bra', 'BraA09t38609Z' => 'bra', 'BraA10t43905Z' => 'bra', 'C02p11060' => 'bna', 'C03p42990' => 'bna', 'C03p67310' => 'bna', 'C04p56990' => 'bna', 'C04p58660' => 'bna', 'C05p09890' => 'bna', 'C05p59680' => 'bna', 'C06p19830' => 'bna', 'C06p53040' => 'bna', 'C07p15230' => 'bna', 'C08p50070' => 'bna', 'C08p50090' => 'bna', 'C09p38330' => 'bna', 'C09p53940' => 'bna', 'CAN.G1014.1' => 'can', 'CAN.G644.30' => 'can', 'CAN.G84.47' => 'can', 'CAN.G919.8' => 'can', 'CANSAT54G0113' => 'cansat', 'CANSAT54G1286' => 'cansat', 'CANSAT64G1020' => 'cansat', 'CARHR008080' => 'chi', 'CARHR008090' => 'chi', 'CARHR012130' => 'chi', 'CARHR038390' => 'chi', 'CARHR082330' => 'chi', 'CARHR120520' => 'chi', 'CARHR151470' => 'chi', 'CARHR190950' => 'chi', 'Carub.0001s0760' => 'cru', 'Carub.0001s1146' => 'cru', 'Carub.0003s0721' => 'cru', 'Carub.0004s0858' => 'cru', 'Carub.0005s1040' => 'cru', 'Carub.0006s2035' => 'cru', 'Carub.0015s0005' => 'cru', 'Ca_01607_v3' => 'car', 'Ca_01677_v3' => 'car', 'Ca_06087_v3' => 'car', 'Ca_19238_v3' => 'car', 'Ca_19373_v3' => 'car', 'Ca_21079_v3' => 'car', 'CBR_g54016' => 'cbr', 'CBR_g54018' => 'cbr', 'CBR_g54020' => 'cbr', 'Cc01_g09780' => 'ccan', 'Cc01_g11680' => 'ccan', 'Cc02_g15610' => 'ccan', 'Cc05_g04350' => 'ccan', 'Cc09_g01580' => 'ccan', 'CDE01G0795' => 'cde', 'CDE02G2024' => 'cde', 'CDE02G2260' => 'cde', 'CDE02G4561' => 'cde', 'CDE05G2733' => 'cde', 'CDE05G3422' => 'cde', 'CDE06G2003' => 'cde', 'CDE08G0576' => 'cde', 'CDE09G0048' => 'cde', 'CDE11G0805' => 'cde', 'Cfa003644' => 'cfa', 'Cfa006290' => 'cfa', 'Cfa010080' => 'cfa', 'Cfa011376' => 'cfa', 'Cfa011576' => 'cfa', 'Cfa011577' => 'cfa', 'Cfa014389' => 'cfa', 'Ciclev10006044m.g' => 'ccl', 'Ciclev10006954m.g' => 'ccl', 'Ciclev10015131m.g' => 'ccl', 'Ciclev10015580m.g' => 'ccl', 'Ciclev10028359m.g' => 'ccl', 'Ciclev10028573m.g' => 'ccl', 'CiPaw.03G159300' => 'cil', 'CiPaw.04G115100' => 'cil', 'CiPaw.09G092800' => 'cil', 'CiPaw.10G071800' => 'cil', 'CiPaw.13G105800' => 'cil', 'CiPaw.13G141000' => 'cil', 'CiPaw.14G103400' => 'cil', 'ClCG01G012700' => 'cla', 'ClCG01G012720' => 'cla', 'ClCG01G021920' => 'cla', 'ClCG02G008870' => 'cla', 'ClCG02G020840' => 'cla', 'ClCG02G021930' => 'cla', 'COL.COLO4_19302' => 'col', 'COL.COLO4_25262' => 'col', 'COL.COLO4_31788' => 'col', 'Cpa.g.c34684' => 'cpa', 'Cpa.g.c36520.1' => 'cpa', 'Cpa.g.c45626' => 'cpa', 'Cpa.g.sc121.17' => 'cpa', 'Cpa.g.sc13.22' => 'cpa', 'Cpa.g.sc87.88' => 'cpa', 'Cre06.g261800' => 'cre', 'CsaV3_1G014500' => 'csa', 'CsaV3_1G014510' => 'csa', 'CsaV3_2G034880' => 'csa', 'CsaV3_6G014760' => 'csa', 'CsaV3_6G021500' => 'csa', 'CsaV3_6G048980' => 'csa', 'CSS0002511' => 'camsi', 'CSS0007556' => 'camsi', 'CSS0008532' => 'camsi', 'CSS0009709' => 'camsi', 'CSS0010486' => 'camsi', 'CSS0016768' => 'camsi', 'CSS0023512' => 'camsi', 'CSS0025341' => 'camsi', 'CSS0027999' => 'camsi', 'CSS0028944' => 'camsi', 'CSS0032292' => 'camsi', 'CSS0032464' => 'camsi', 'CSS0037153' => 'camsi', 'CSS0039256' => 'camsi', 'CSS0048392' => 'camsi', 'CSS0050458' => 'camsi', 'DCAR_004224' => 'dca', 'DCAR_006147' => 'dca', 'DCAR_006465' => 'dca', 'DCAR_008159' => 'dca', 'DCAR_012164' => 'dca', 'DCAR_019764' => 'dca', 'Dinv05418' => 'din', 'Dinv10839' => 'din', 'Dinv12521' => 'din', 'Dinv13900' => 'din', 'Dinv29426' => 'din', 'Duzib150G0263' => 'dzi', 'Duzib168G1178' => 'dzi', 'Duzib168G1924' => 'dzi', 'Duzib170G0299' => 'dzi', 'Duzib170G0813' => 'dzi', 'Duzib235G1128' => 'dzi', 'Duzib248G1060' => 'dzi', 'ECA232G1910' => 'eca', 'ECA233G4621' => 'eca', 'ECA238G1216' => 'eca', 'ECA238G1784' => 'eca', 'ECA248G1242' => 'eca', 'EL10Ac8g20071' => 'bvu', 'EL10Ac9g21086' => 'bvu', 'EL10Ac9g22407' => 'bvu', 'EL10Ac9g22412' => 'bvu', 'Eucgr.A01119' => 'egr', 'Eucgr.E04043' => 'egr', 'Eucgr.J00428' => 'egr', 'Eucgr.J00958' => 'egr', 'FAN11G3091' => 'fan', 'FAN11G3651' => 'fan', 'FAN16G2566' => 'fan', 'FAN21G3155' => 'fan', 'FAN21G3400' => 'fan', 'FAN21G3543' => 'fan', 'FAN25G0234' => 'fan', 'FAN25G1422' => 'fan', 'FAN25G3392' => 'fan', 'FvH4_3g01940' => 'fve', 'FvH4_3g29870' => 'fve', 'FvH4_3g33680' => 'fve', 'Glyma.09G004200' => 'gma', 'Glyma.11G151288' => 'gma', 'Glyma.11G189100' => 'gma', 'Glyma.12G072500' => 'gma', 'Glyma.12G085500' => 'gma', 'Glyma.12G181800' => 'gma', 'Glyma.12G193000' => 'gma', 'Glyma.13G309300' => 'gma', 'Glyma.13G319000' => 'gma', 'Glyma.17G012600' => 'gma', 'Gohir.A06G148600' => 'ghi', 'Gohir.A07G115800' => 'ghi', 'Gohir.A08G003600' => 'ghi', 'Gohir.A09G093300' => 'ghi', 'Gohir.A09G105400' => 'ghi', 'Gohir.A09G105500' => 'ghi', 'Gohir.D06G154600' => 'ghi', 'Gohir.D07G120200' => 'ghi', 'Gohir.D08G013900' => 'ghi', 'Gohir.D09G093100' => 'ghi', 'Gohir.D09G102200' => 'ghi', 'Gohir.D09G102300' => 'ghi', 'Gorai.001G129400' => 'gra', 'Gorai.004G008200' => 'gra', 'Gorai.006G109800' => 'gra', 'Gorai.006G119500' => 'gra', 'Gorai.006G121300' => 'gra', 'Gorai.010G180700' => 'gra', 'GSVIVG01012716001' => 'vvi', 'GSVIVG01025118001' => 'vvi', 'GSVIVG01030439001' => 'vvi', 'GSVIVG01031397001' => 'vvi', 'HanXRQChr01g0004201' => 'han', 'HanXRQChr02g0054941' => 'han', 'HanXRQChr05g0141811' => 'han', 'HanXRQChr07g0197751' => 'han', 'HanXRQChr11g0346691' => 'han', 'HanXRQChr13g0396971' => 'han', 'HanXRQChr14g0432951' => 'han', 'HanXRQChr14g0452001' => 'han', 'HanXRQChr15g0496681' => 'han', 'HanXRQChr17g0557491' => 'han', 'HanXRQChr17g0557501' => 'han', 'Haze_06809' => 'cav', 'Haze_12852' => 'cav', 'Haze_15850' => 'cav', 'Haze_23446' => 'cav', 'Haze_23942' => 'cav', 'Haze_23943' => 'cav', 'Hma1.2p1_0091F.1_g046450' => 'hma', 'Hma1.2p1_0128F.1_g059910' => 'hma', 'Hma1.2p1_0249F.1_g102260' => 'hma', 'Hma1.2p1_0453F.1_g156190' => 'hma', 'Hma1.2p1_0695F.1_g204380' => 'hma', 'Hma1.2p1_0749F.1_g212650' => 'hma', 'Hma1.2p1_2156F.1_g315420' => 'hma', 'Hma1.2p1_2686F.1_g326940' => 'hma', 'HPP92_006428' => 'vpl', 'HPP92_012069' => 'vpl', 'HPP92_014129' => 'vpl', 'HPP92_014133' => 'vpl', 'HPP92_017315' => 'vpl', 'HPP92_026445' => 'vpl', 'HPP92_026446' => 'vpl', 'Hund00774' => 'sun', 'Hund07682' => 'sun', 'Hund21413' => 'sun', 'Hund23462' => 'sun', 'Hund23463' => 'sun', 'Lalb_Chr03g0027911' => 'lal', 'Lalb_Chr13g0304271' => 'lal', 'Lalb_Chr19g0137471' => 'lal', 'Lalb_Chr22g0350651' => 'lal', 'Lalb_Chr24g0395151' => 'lal', 'Lj1A1231T40' => 'lonja', 'Lj1A221T48' => 'lonja', 'Lj1C924T12' => 'lonja', 'Lj2C993G6' => 'lonja', 'Lj3g0005790' => 'lja', 'Lj3g0015432' => 'lja', 'Lj3g0017722' => 'lja', 'Lj3g0018497' => 'lja', 'Lj4g0025071' => 'lja', 'Lsat_1_v5_gn_1_129680' => 'lsa', 'Lsat_1_v5_gn_2_25321' => 'lsa', 'Lsat_1_v5_gn_2_95461' => 'lsa', 'Lsat_1_v5_gn_4_159620' => 'lsa', 'Lsat_1_v5_gn_6_41301' => 'lsa', 'Lsat_1_v5_gn_6_74660' => 'lsa', 'Lsat_1_v5_gn_7_11520' => 'lsa', 'Lsat_1_v5_gn_9_67680' => 'lsa', 'Manes.04G008300' => 'mes', 'Manes.04G008400' => 'mes', 'Manes.04G026500' => 'mes', 'Manes.10G135300' => 'mes', 'Manes.11G157300' => 'mes', 'Manes.12G074000' => 'mes', 'Manes.16G006200' => 'mes', 'Manes.17G026400' => 'mes', 'Mapoly0024s0086' => 'mpo', 'Mapoly0024s0087' => 'mpo', 'Mapoly0071s0057' => 'mpo', 'Mapoly0204s0012' => 'mpo', 'MBI04_g37681_MAGBIO' => 'mbi', 'MBI05_g17779_MAGBIO' => 'mbi', 'MBI12_g31184_MAGBIO' => 'mbi', 'MBI17_g11083_MAGBIO' => 'mbi', 'MBI18_g03883_MAGBIO' => 'mbi', 'MBI18_g28940_MAGBIO' => 'mbi', 'MCO01G690' => 'mco', 'MD03G1109900' => 'mdo', 'MD03G1134800' => 'mdo', 'MD05G1348000' => 'mdo', 'MD10G1322400' => 'mdo', 'MD11G1123300' => 'mdo', 'MD11G1157600' => 'mdo', 'Medtr2g084875' => 'mtr', 'Medtr2g088130' => 'mtr', 'Medtr4g055310' => 'mtr', 'Medtr4g061070' => 'mtr', 'Medtr4g132250' => 'mtr', 'MELO3C004795.2' => 'cme', 'MELO3C004797.2' => 'cme', 'MELO3C007396.2' => 'cme', 'MELO3C019277.2' => 'cme', 'MELO3C021449.2' => 'cme', 'MELO3C025736.2' => 'cme', 'Migut.D02175' => 'egut', 'Migut.H01573' => 'egut', 'Migut.M01327' => 'egut', 'Migut.N02513' => 'egut', 'MSTRG.14638' => 'ama', 'MSTRG.18632' => 'ama', 'MSTRG.7203' => 'ama', 'Nitab4.5_0000533g0140' => 'nta', 'Nitab4.5_0000888g0150' => 'nta', 'Nitab4.5_0001453g0040' => 'nta', 'Nitab4.5_0002827g0090' => 'nta', 'Nitab4.5_0003082g0040' => 'nta', 'Nitab4.5_0007799g0040' => 'nta', 'Nitab4.5_0008983g0010' => 'nta', 'Nitab4.5_0009017g0020' => 'nta', 'Nn1g02132' => 'nnu', 'Nn1g03492' => 'nnu', 'Nn1g03493' => 'nnu', 'Nn1g03494' => 'nnu', 'Nn1g07164' => 'nnu', 'Nn1g07291' => 'nnu', 'Nn2g10655' => 'nnu', 'Nn2g11652' => 'nnu', 'Nn2g14008' => 'nnu', 'Nn3g17476' => 'nnu', 'Nn3g17477' => 'nnu', 'Nn4g22370' => 'nnu', 'Nn4g25255' => 'nnu', 'Nn5g27755' => 'nnu', 'Nn6g34260' => 'nnu', 'Nn6g35041' => 'nnu', 'Oeu005924.1' => 'oeu', 'Oeu008383.1' => 'oeu', 'Oeu014928.1' => 'oeu', 'Oeu019889.1' => 'oeu', 'Oeu022271.1' => 'oeu', 'Oeu025271.1' => 'oeu', 'Oeu036302.1' => 'oeu', 'Oeu044100.1' => 'oeu', 'Os01g0528300' => 'osa', 'Os03g0286200' => 'osa', 'Os04g0406600' => 'osa', 'Os07g0512000' => 'osa', 'Os07g0694600' => 'osa', 'Os08g0411000' => 'osa', 'Os09g0565700' => 'osa', 'Os09g0566050' => 'osa', 'Os10g0523700' => 'osa', 'Peaxi162Scf00002g00514' => 'pax', 'Peaxi162Scf00047g01817' => 'pax', 'Peaxi162Scf00114g00001' => 'pax', 'Peaxi162Scf00147g00613' => 'pax', 'Peaxi162Scf00389g00425' => 'pax', 'PGR042G1139' => 'pgr', 'PGR042G3273' => 'pgr', 'PGR102G2180' => 'pgr', 'PGR119G0234' => 'pgr', 'PGR119G0668' => 'pgr', 'PGSC0003DMG400007122' => 'stu', 'PGSC0003DMG400016478' => 'stu', 'PGSC0003DMG400025374' => 'stu', 'PGSC0003DMG400026536' => 'stu', 'Phvul.003G079600' => 'pvu', 'Phvul.005G115600' => 'pvu', 'Phvul.005G127100' => 'pvu', 'Phvul.006G149500' => 'pvu', 'Phvul.006G149600' => 'pvu', 'Phvul.011G071800' => 'pvu', 'Phvul.011G090400' => 'pvu', 'Potri.004G013400' => 'ptr', 'Potri.004G188100' => 'ptr', 'Potri.008G195500' => 'ptr', 'Potri.009G148800' => 'ptr', 'Potri.011G004700' => 'ptr', 'Pp3c17_22810' => 'ppa', 'Pp3c18_4480' => 'ppa', 'Pp3c19_13030' => 'ppa', 'Pp3c1_33620' => 'ppa', 'Pp3c2_9380' => 'ppa', 'PRCOL_00001023' => 'pco', 'Prupe.3G216300' => 'ppe', 'Prupe.4G019500' => 'ppe', 'Prupe.6G092500' => 'ppe', 'Prupe.6G119200' => 'ppe', 'Psat0s1945g0080' => 'psa', 'Psat0s4167g0040' => 'psa', 'Psat1g185800' => 'psa', 'Psat4g006440' => 'psa', 'Psat4g006480' => 'psa', 'Psat4g168120' => 'psa', 'Psat5g255680' => 'psa', 'Psat5g261760' => 'psa', 'Psat7g222120' => 'psa', 'PSO063G7252' => 'pso', 'PSO170G4778' => 'pso', 'PSO210G2249' => 'pso', 'PSO339G2411' => 'pso', 'PSO339G2457' => 'pso', 'PSO339G2854' => 'pso', 'PSO339G4288' => 'pso', 'PSO339G4615' => 'pso', 'PSO384G2796' => 'pso', 'PSO384G2940' => 'pso', 'PSO384G4227' => 'pso', 'PSO478G1425' => 'pso', 'PSO541G3863' => 'pso', 'PSO675G0507' => 'pso', 'PSO782G0338' => 'pso', 'PSO832G0644' => 'pso', 'QL01p013664' => 'qlo', 'QL01p036598' => 'qlo', 'QL05p072984' => 'qlo', 'QL08p005768' => 'qlo', 'QL08p032743' => 'qlo', 'QL93p0073_0439' => 'qlo', 'QL93p0073_0444' => 'qlo', 'RcHm_v2.0_Chr5g0002851' => 'rch', 'RcHm_v2.0_Chr5g0055201' => 'rch', 'RcHm_v2.0_Chr5g0061191' => 'rch', 'RcHm_v2.0_Chr7g0203231' => 'rch', 'Rhsim01G0208100' => 'rsi', 'Rhsim01G0208200' => 'rsi', 'Rhsim02G0106500' => 'rsi', 'Rhsim03G0107900' => 'rsi', 'Rhsim06G0163400' => 'rsi', 'Rhsim13G0105200' => 'rsi', 'Sabra04G0006300' => 'sbr', 'Sabra04G0127000' => 'sbr', 'Sabra08G0148700' => 'sbr', 'Sabra09G0117400' => 'sbr', 'SalBow1G3326' => 'sbo', 'SalBow3G3228' => 'sbo', 'SalBow6G1634' => 'sbo', 'SalBow6G3603' => 'sbo', 'SalBow6G5266' => 'sbo', 'SalBow7G2265' => 'sbo', 'SalBow8G0850' => 'sbo', 'SalBow8G2592' => 'sbo', 'Sc05g0009240' => 'sci', 'Sc12g0002300' => 'sci', 'Sc21g0000100' => 'sci', 'Sc21g0004720' => 'sci', 'Sed0002949' => 'sed', 'Sed0004114' => 'sed', 'Sed0004306' => 'sed', 'Sed0006172' => 'sed', 'Sed0008413' => 'sed', 'Sed0013809' => 'sed', 'Sed0019556' => 'sed', 'SEGI_03570' => 'sgi', 'SEGI_07859' => 'sgi', 'SEGI_15042' => 'sgi', 'SEGI_16263' => 'sgi', 'SEGI_16552' => 'sgi', 'SEGI_24331' => 'sgi', 'SEGI_27316' => 'sgi', 'SEGI_29521' => 'sgi', 'SEGI_41342' => 'sgi', 'SGA_v2.0_scaffold27G11617' => 'sas', 'SGA_v2.0_scaffold316G48428' => 'sas', 'SGA_v2.0_scaffold49G18261' => 'sas', 'SGA_v2.0_scaffold7G03831' => 'sas', 'SGA_v2.0_scaffold93G28359' => 'sas', 'SHI02210' => 'shi', 'SHI06028' => 'shi', 'SHI06321' => 'shi', 'SMO111G0012' => 'smo', 'SMO228G0080' => 'smo', 'SMO356G0756' => 'smo', 'Solyc02g080620.3' => 'sly', 'Solyc06g074530.1' => 'sly', 'Solyc11g066890.1' => 'sly', 'Solyc11g072520.3' => 'sly', 'Sopen02g025330' => 'spe', 'Sopen06g031000' => 'spe', 'Sopen09g008240' => 'spe', 'Sopen09g025210' => 'spe', 'Sopen11g026600' => 'spe', 'Sopen11g030170' => 'spe', 'Sp1g10420' => 'spa', 'Sp3g06570' => 'spa', 'Sp4g10660' => 'spa', 'Sp5g16460' => 'spa', 'Sp6g22710' => 'spa', 'TAR365G0112' => 'tar', 'TAR369G0717' => 'tar', 'TAR374G0976' => 'tar', 'TAR623G1128' => 'tar', 'TAR626G1937' => 'tar', 'TAR627G0123' => 'tar', 'TAR628G0305' => 'tar', 'TAR636G1176' => 'tar', 'TAR636G2442' => 'tar', 'THA.LOC104800556' => 'tha', 'THA.LOC104809501' => 'tha', 'THA.LOC104815126' => 'tha', 'THA.LOC104815732' => 'tha', 'THA.LOC104823528' => 'tha', 'Thecc.02G365600' => 'tca', 'Thecc.06G222300' => 'tca', 'Thecc.09G261800' => 'tca', 'Thecc.09G291400' => 'tca', 'Thhalv10003028m.g' => 'esa', 'Thhalv10007886m.g' => 'esa', 'Thhalv10016085m.g' => 'esa', 'Thhalv10016681m.g' => 'esa', 'Thhalv10020951m.g' => 'esa', 'TPR.G15598' => 'tpr', 'TPR.G29305' => 'tpr', 'TPR.G32395' => 'tpr', 'TPR.G36998' => 'tpr', 'TPR.G4227' => 'tpr', 'TWI18G1433' => 'twi', 'TWI31G0755' => 'twi', 'TWI38G0912' => 'twi', 'TWI75G1097' => 'twi', 'TWI75G1619' => 'twi', 'TWI79G1336' => 'twi', 'unitig_0.g943' => 'ugi', 'unitig_0.g944' => 'ugi', 'unitig_22.g6646' => 'ugi', 'unitig_37.g12681' => 'ugi', 'unitig_8.g3290' => 'ugi', 'vmacro03278' => 'vma', 'vmacro12197' => 'vma', 'vmacro14478' => 'vma', 'vmacro15787' => 'vma', 'vmacro15789' => 'vma', 'vmacro15790' => 'vma', 'vmacro15806' => 'vma', 'vmacro22907' => 'vma', 'vmacro22908' => 'vma', 'vmacro22909' => 'vma', 'vmacro23108' => 'vma', 'VMungo0540G0540' => 'vmu', 'VMungo0540G2468' => 'vmu', 'VMungo1080G0390' => 'vmu', 'VMungo1080G1165' => 'vmu', 'VMungo1127G0170' => 'vmu', 'VMungo1127G2099' => 'vmu', 'VMungo1215G3013' => 'vmu', 'Zm00001eb013110' => 'zma', 'Zm00001eb084260' => 'zma', 'Zm00001eb096110' => 'zma', 'Zm00001eb217510' => 'zma', 'Zm00001eb322550' => 'zma', 'Zm00001eb390770' => 'zma', 'Zm00001eb397170' => 'zma', 'Zm00001eb404610' => 'zma', 'Zm00001eb421790' => 'zma' ), 'gf_id' => 'HOM05D000911', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000911' ), 'data_identifier' => 'HOM05D000911', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000911', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27780' => 'bna', 'A03p35380' => 'bna', 'A04p21160' => 'bna', 'A05p40570' => 'bna', 'A06p26900' => 'bna', 'A08p33230' => 'bna', 'A09p65960' => 'bna', 'A10p18290' => 'bna', 'Aa31LG1G12990' => 'aar', 'Aa31LG1G2980' => 'aar', 'Aa31LG4G14320' => 'aar', 'Aa31LG7G11800' => 'aar', 'Aa31sc36G50' => 'aar', 'Aa31sc36G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3721' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5459' => 'aag', 'Actinidia03028' => 'ach', 'Actinidia03753' => 'ach', 'Actinidia04187' => 'ach', 'Actinidia05509' => 'ach', 'Actinidia24180' => 'ach', 'Actinidia26906' => 'ach', 'Actinidia37097' => 'ach', 'Actinidia38249' => 'ach', 'Ah.01g003470' => 'amhyb', 'Ah.01g004580' => 'amhyb', 'Ah.01g014850' => 'amhyb', 'Ah.01g016830' => 'amhyb', 'Ah.14g088000' => 'amhyb', 'AL1G22980' => 'aly', 'AL3G18990' => 'aly', 'AL4G22440' => 'aly', 'AL4G33180' => 'aly', 'AL5G22920' => 'aly', 'AL6G33660' => 'aly', 'AL8G20720' => 'aly', 'Aqoxy1G00935' => 'aox', 'Aqoxy1G02094' => 'aox', 'Aqoxy2G01239' => 'aox', 'Aqoxy4G01870' => 'aox', 'Aqoxy7G00450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.36ZVTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71EM27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5D6C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH3WRE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3NCM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RIM768' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YB5YRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z36GDV' => 'arhy', 'AT1G08250' => 'ath', 'AT1G11790' => 'ath', 'AT2G27820' => 'ath', 'AT3G07630' => 'ath', 'AT3G44720' => 'ath', 'AT5G22630' => 'ath', 'ATR0693G304' => 'atr', 'ATR0794G109' => 'atr', 'ATR0820G120' => 'atr', 'ATR1159G064' => 'atr', 'Atru.chr10.2239' => 'acertr', 'Atru.chr3.3371' => 'acertr', 'Atru.chr6.3202' => 'acertr', 'AUR62006499' => 'cqu', 'AUR62012718' => 'cqu', 'AUR62021938' => 'cqu', 'AUR62023932' => 'cqu', 'AUR62025034' => 'cqu', 'AUR62025035' => 'cqu', 'AUR62038307' => 'cqu', 'AUR62043466' => 'cqu', 'BcaB02g10748' => 'bca', 'BcaB03g13231' => 'bca', 'BcaB03g14689' => 'bca', 'BcaB05g22716' => 'bca', 'BcaB06g28172' => 'bca', 'BcaB08g36413' => 'bca', 'BcaC01g02186' => 'bca', 'BcaC01g04272' => 'bca', 'BcaC02g08080' => 'bca', 'BcaC02g08227' => 'bca', 'BcaC03g13901' => 'bca', 'BcaC04g19593' => 'bca', 'BcaC04g20874' => 'bca', 'BcaC05g29557' => 'bca', 'BcaC06g35505' => 'bca', 'BcaC07g41954' => 'bca', 'BcaC07g41955' => 'bca', 'BcaC07g41956' => 'bca', 'BcaC07g42519' => 'bca', 'BcaC07g42520' => 'bca', 'BcaC07g42523' => 'bca', 'BcaC07g42524' => 'bca', 'BcaC07g42525' => 'bca', 'BcaC08g47480' => 'bca', 'BcaC08g47481' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00530' => 'bna', 'BolC2t07178H' => 'bol', 'BolC3t16567H' => 'bol', 'BolC4t27234H' => 'bol', 'BolC5t29728H' => 'bol', 'BolC5t34622H' => 'bol', 'BolC6t40321H' => 'bol', 'BolC7t42028H' => 'bol', 'BolC8t49125H' => 'bol', 'BolC8t52538H' => 'bol', 'BolC8t52539H' => 'bol', 'BolC9t56681H' => 'bol', 'BolC9t58266H' => 'bol', 'BolSC21t60294H' => 'bol', 'BraA02t05670Z' => 'bra', 'BraA03t12716Z' => 'bra', 'BraA04t17685Z' => 'bra', 'BraA05t22788Z' => 'bra', 'BraA06t24032Z' => 'bra', 'BraA06t25625Z' => 'bra', 'BraA07t27930Z' => 'bra', 'BraA08t35242Z' => 'bra', 'BraA09t38609Z' => 'bra', 'BraA10t43905Z' => 'bra', 'C02p11060' => 'bna', 'C03p42990' => 'bna', 'C03p67310' => 'bna', 'C04p56990' => 'bna', 'C04p58660' => 'bna', 'C05p09890' => 'bna', 'C05p59680' => 'bna', 'C06p19830' => 'bna', 'C06p53040' => 'bna', 'C07p15230' => 'bna', 'C08p50070' => 'bna', 'C08p50090' => 'bna', 'C09p38330' => 'bna', 'C09p53940' => 'bna', 'CAN.G1014.1' => 'can', 'CAN.G644.30' => 'can', 'CAN.G84.47' => 'can', 'CAN.G919.8' => 'can', 'CANSAT54G0113' => 'cansat', 'CANSAT54G1286' => 'cansat', 'CANSAT64G1020' => 'cansat', 'CARHR008080' => 'chi', 'CARHR008090' => 'chi', 'CARHR012130' => 'chi', 'CARHR038390' => 'chi', 'CARHR082330' => 'chi', 'CARHR120520' => 'chi', 'CARHR151470' => 'chi', 'CARHR190950' => 'chi', 'Carub.0001s0760' => 'cru', 'Carub.0001s1146' => 'cru', 'Carub.0003s0721' => 'cru', 'Carub.0004s0858' => 'cru', 'Carub.0005s1040' => 'cru', 'Carub.0006s2035' => 'cru', 'Carub.0015s0005' => 'cru', 'Ca_01607_v3' => 'car', 'Ca_01677_v3' => 'car', 'Ca_06087_v3' => 'car', 'Ca_19238_v3' => 'car', 'Ca_19373_v3' => 'car', 'Ca_21079_v3' => 'car', 'CBR_g54016' => 'cbr', 'CBR_g54018' => 'cbr', 'CBR_g54020' => 'cbr', 'Cc01_g09780' => 'ccan', 'Cc01_g11680' => 'ccan', 'Cc02_g15610' => 'ccan', 'Cc05_g04350' => 'ccan', 'Cc09_g01580' => 'ccan', 'CDE01G0795' => 'cde', 'CDE02G2024' => 'cde', 'CDE02G2260' => 'cde', 'CDE02G4561' => 'cde', 'CDE05G2733' => 'cde', 'CDE05G3422' => 'cde', 'CDE06G2003' => 'cde', 'CDE08G0576' => 'cde', 'CDE09G0048' => 'cde', 'CDE11G0805' => 'cde', 'Cfa003644' => 'cfa', 'Cfa006290' => 'cfa', 'Cfa010080' => 'cfa', 'Cfa011376' => 'cfa', 'Cfa011576' => 'cfa', 'Cfa011577' => 'cfa', 'Cfa014389' => 'cfa', 'Ciclev10006044m.g' => 'ccl', 'Ciclev10006954m.g' => 'ccl', 'Ciclev10015131m.g' => 'ccl', 'Ciclev10015580m.g' => 'ccl', 'Ciclev10028359m.g' => 'ccl', 'Ciclev10028573m.g' => 'ccl', 'CiPaw.03G159300' => 'cil', 'CiPaw.04G115100' => 'cil', 'CiPaw.09G092800' => 'cil', 'CiPaw.10G071800' => 'cil', 'CiPaw.13G105800' => 'cil', 'CiPaw.13G141000' => 'cil', 'CiPaw.14G103400' => 'cil', 'ClCG01G012700' => 'cla', 'ClCG01G012720' => 'cla', 'ClCG01G021920' => 'cla', 'ClCG02G008870' => 'cla', 'ClCG02G020840' => 'cla', 'ClCG02G021930' => 'cla', 'COL.COLO4_19302' => 'col', 'COL.COLO4_25262' => 'col', 'COL.COLO4_31788' => 'col', 'Cpa.g.c34684' => 'cpa', 'Cpa.g.c36520.1' => 'cpa', 'Cpa.g.c45626' => 'cpa', 'Cpa.g.sc121.17' => 'cpa', 'Cpa.g.sc13.22' => 'cpa', 'Cpa.g.sc87.88' => 'cpa', 'Cre06.g261800' => 'cre', 'CsaV3_1G014500' => 'csa', 'CsaV3_1G014510' => 'csa', 'CsaV3_2G034880' => 'csa', 'CsaV3_6G014760' => 'csa', 'CsaV3_6G021500' => 'csa', 'CsaV3_6G048980' => 'csa', 'CSS0002511' => 'camsi', 'CSS0007556' => 'camsi', 'CSS0008532' => 'camsi', 'CSS0009709' => 'camsi', 'CSS0010486' => 'camsi', 'CSS0016768' => 'camsi', 'CSS0023512' => 'camsi', 'CSS0025341' => 'camsi', 'CSS0027999' => 'camsi', 'CSS0028944' => 'camsi', 'CSS0032292' => 'camsi', 'CSS0032464' => 'camsi', 'CSS0037153' => 'camsi', 'CSS0039256' => 'camsi', 'CSS0048392' => 'camsi', 'CSS0050458' => 'camsi', 'DCAR_004224' => 'dca', 'DCAR_006147' => 'dca', 'DCAR_006465' => 'dca', 'DCAR_008159' => 'dca', 'DCAR_012164' => 'dca', 'DCAR_019764' => 'dca', 'Dinv05418' => 'din', 'Dinv10839' => 'din', 'Dinv12521' => 'din', 'Dinv13900' => 'din', 'Dinv29426' => 'din', 'Duzib150G0263' => 'dzi', 'Duzib168G1178' => 'dzi', 'Duzib168G1924' => 'dzi', 'Duzib170G0299' => 'dzi', 'Duzib170G0813' => 'dzi', 'Duzib235G1128' => 'dzi', 'Duzib248G1060' => 'dzi', 'ECA232G1910' => 'eca', 'ECA233G4621' => 'eca', 'ECA238G1216' => 'eca', 'ECA238G1784' => 'eca', 'ECA248G1242' => 'eca', 'EL10Ac8g20071' => 'bvu', 'EL10Ac9g21086' => 'bvu', 'EL10Ac9g22407' => 'bvu', 'EL10Ac9g22412' => 'bvu', 'Eucgr.A01119' => 'egr', 'Eucgr.E04043' => 'egr', 'Eucgr.J00428' => 'egr', 'Eucgr.J00958' => 'egr', 'FAN11G3091' => 'fan', 'FAN11G3651' => 'fan', 'FAN16G2566' => 'fan', 'FAN21G3155' => 'fan', 'FAN21G3400' => 'fan', 'FAN21G3543' => 'fan', 'FAN25G0234' => 'fan', 'FAN25G1422' => 'fan', 'FAN25G3392' => 'fan', 'FvH4_3g01940' => 'fve', 'FvH4_3g29870' => 'fve', 'FvH4_3g33680' => 'fve', 'Glyma.09G004200' => 'gma', 'Glyma.11G151288' => 'gma', 'Glyma.11G189100' => 'gma', 'Glyma.12G072500' => 'gma', 'Glyma.12G085500' => 'gma', 'Glyma.12G181800' => 'gma', 'Glyma.12G193000' => 'gma', 'Glyma.13G309300' => 'gma', 'Glyma.13G319000' => 'gma', 'Glyma.17G012600' => 'gma', 'Gohir.A06G148600' => 'ghi', 'Gohir.A07G115800' => 'ghi', 'Gohir.A08G003600' => 'ghi', 'Gohir.A09G093300' => 'ghi', 'Gohir.A09G105400' => 'ghi', 'Gohir.A09G105500' => 'ghi', 'Gohir.D06G154600' => 'ghi', 'Gohir.D07G120200' => 'ghi', 'Gohir.D08G013900' => 'ghi', 'Gohir.D09G093100' => 'ghi', 'Gohir.D09G102200' => 'ghi', 'Gohir.D09G102300' => 'ghi', 'Gorai.001G129400' => 'gra', 'Gorai.004G008200' => 'gra', 'Gorai.006G109800' => 'gra', 'Gorai.006G119500' => 'gra', 'Gorai.006G121300' => 'gra', 'Gorai.010G180700' => 'gra', 'GSVIVG01012716001' => 'vvi', 'GSVIVG01025118001' => 'vvi', 'GSVIVG01030439001' => 'vvi', 'GSVIVG01031397001' => 'vvi', 'HanXRQChr01g0004201' => 'han', 'HanXRQChr02g0054941' => 'han', 'HanXRQChr05g0141811' => 'han', 'HanXRQChr07g0197751' => 'han', 'HanXRQChr11g0346691' => 'han', 'HanXRQChr13g0396971' => 'han', 'HanXRQChr14g0432951' => 'han', 'HanXRQChr14g0452001' => 'han', 'HanXRQChr15g0496681' => 'han', 'HanXRQChr17g0557491' => 'han', 'HanXRQChr17g0557501' => 'han', 'Haze_06809' => 'cav', 'Haze_12852' => 'cav', 'Haze_15850' => 'cav', 'Haze_23446' => 'cav', 'Haze_23942' => 'cav', 'Haze_23943' => 'cav', 'Hma1.2p1_0091F.1_g046450' => 'hma', 'Hma1.2p1_0128F.1_g059910' => 'hma', 'Hma1.2p1_0249F.1_g102260' => 'hma', 'Hma1.2p1_0453F.1_g156190' => 'hma', 'Hma1.2p1_0695F.1_g204380' => 'hma', 'Hma1.2p1_0749F.1_g212650' => 'hma', 'Hma1.2p1_2156F.1_g315420' => 'hma', 'Hma1.2p1_2686F.1_g326940' => 'hma', 'HPP92_006428' => 'vpl', 'HPP92_012069' => 'vpl', 'HPP92_014129' => 'vpl', 'HPP92_014133' => 'vpl', 'HPP92_017315' => 'vpl', 'HPP92_026445' => 'vpl', 'HPP92_026446' => 'vpl', 'Hund00774' => 'sun', 'Hund07682' => 'sun', 'Hund21413' => 'sun', 'Hund23462' => 'sun', 'Hund23463' => 'sun', 'Lalb_Chr03g0027911' => 'lal', 'Lalb_Chr13g0304271' => 'lal', 'Lalb_Chr19g0137471' => 'lal', 'Lalb_Chr22g0350651' => 'lal', 'Lalb_Chr24g0395151' => 'lal', 'Lj1A1231T40' => 'lonja', 'Lj1A221T48' => 'lonja', 'Lj1C924T12' => 'lonja', 'Lj2C993G6' => 'lonja', 'Lj3g0005790' => 'lja', 'Lj3g0015432' => 'lja', 'Lj3g0017722' => 'lja', 'Lj3g0018497' => 'lja', 'Lj4g0025071' => 'lja', 'Lsat_1_v5_gn_1_129680' => 'lsa', 'Lsat_1_v5_gn_2_25321' => 'lsa', 'Lsat_1_v5_gn_2_95461' => 'lsa', 'Lsat_1_v5_gn_4_159620' => 'lsa', 'Lsat_1_v5_gn_6_41301' => 'lsa', 'Lsat_1_v5_gn_6_74660' => 'lsa', 'Lsat_1_v5_gn_7_11520' => 'lsa', 'Lsat_1_v5_gn_9_67680' => 'lsa', 'Manes.04G008300' => 'mes', 'Manes.04G008400' => 'mes', 'Manes.04G026500' => 'mes', 'Manes.10G135300' => 'mes', 'Manes.11G157300' => 'mes', 'Manes.12G074000' => 'mes', 'Manes.16G006200' => 'mes', 'Manes.17G026400' => 'mes', 'Mapoly0024s0086' => 'mpo', 'Mapoly0024s0087' => 'mpo', 'Mapoly0071s0057' => 'mpo', 'Mapoly0204s0012' => 'mpo', 'MBI04_g37681_MAGBIO' => 'mbi', 'MBI05_g17779_MAGBIO' => 'mbi', 'MBI12_g31184_MAGBIO' => 'mbi', 'MBI17_g11083_MAGBIO' => 'mbi', 'MBI18_g03883_MAGBIO' => 'mbi', 'MBI18_g28940_MAGBIO' => 'mbi', 'MCO01G690' => 'mco', 'MD03G1109900' => 'mdo', 'MD03G1134800' => 'mdo', 'MD05G1348000' => 'mdo', 'MD10G1322400' => 'mdo', 'MD11G1123300' => 'mdo', 'MD11G1157600' => 'mdo', 'Medtr2g084875' => 'mtr', 'Medtr2g088130' => 'mtr', 'Medtr4g055310' => 'mtr', 'Medtr4g061070' => 'mtr', 'Medtr4g132250' => 'mtr', 'MELO3C004795.2' => 'cme', 'MELO3C004797.2' => 'cme', 'MELO3C007396.2' => 'cme', 'MELO3C019277.2' => 'cme', 'MELO3C021449.2' => 'cme', 'MELO3C025736.2' => 'cme', 'Migut.D02175' => 'egut', 'Migut.H01573' => 'egut', 'Migut.M01327' => 'egut', 'Migut.N02513' => 'egut', 'MSTRG.14638' => 'ama', 'MSTRG.18632' => 'ama', 'MSTRG.7203' => 'ama', 'Nitab4.5_0000533g0140' => 'nta', 'Nitab4.5_0000888g0150' => 'nta', 'Nitab4.5_0001453g0040' => 'nta', 'Nitab4.5_0002827g0090' => 'nta', 'Nitab4.5_0003082g0040' => 'nta', 'Nitab4.5_0007799g0040' => 'nta', 'Nitab4.5_0008983g0010' => 'nta', 'Nitab4.5_0009017g0020' => 'nta', 'Nn1g02132' => 'nnu', 'Nn1g03492' => 'nnu', 'Nn1g03493' => 'nnu', 'Nn1g03494' => 'nnu', 'Nn1g07164' => 'nnu', 'Nn1g07291' => 'nnu', 'Nn2g10655' => 'nnu', 'Nn2g11652' => 'nnu', 'Nn2g14008' => 'nnu', 'Nn3g17476' => 'nnu', 'Nn3g17477' => 'nnu', 'Nn4g22370' => 'nnu', 'Nn4g25255' => 'nnu', 'Nn5g27755' => 'nnu', 'Nn6g34260' => 'nnu', 'Nn6g35041' => 'nnu', 'Oeu005924.1' => 'oeu', 'Oeu008383.1' => 'oeu', 'Oeu014928.1' => 'oeu', 'Oeu019889.1' => 'oeu', 'Oeu022271.1' => 'oeu', 'Oeu025271.1' => 'oeu', 'Oeu036302.1' => 'oeu', 'Oeu044100.1' => 'oeu', 'Os01g0528300' => 'osa', 'Os03g0286200' => 'osa', 'Os04g0406600' => 'osa', 'Os07g0512000' => 'osa', 'Os07g0694600' => 'osa', 'Os08g0411000' => 'osa', 'Os09g0565700' => 'osa', 'Os09g0566050' => 'osa', 'Os10g0523700' => 'osa', 'Peaxi162Scf00002g00514' => 'pax', 'Peaxi162Scf00047g01817' => 'pax', 'Peaxi162Scf00114g00001' => 'pax', 'Peaxi162Scf00147g00613' => 'pax', 'Peaxi162Scf00389g00425' => 'pax', 'PGR042G1139' => 'pgr', 'PGR042G3273' => 'pgr', 'PGR102G2180' => 'pgr', 'PGR119G0234' => 'pgr', 'PGR119G0668' => 'pgr', 'PGSC0003DMG400007122' => 'stu', 'PGSC0003DMG400016478' => 'stu', 'PGSC0003DMG400025374' => 'stu', 'PGSC0003DMG400026536' => 'stu', 'Phvul.003G079600' => 'pvu', 'Phvul.005G115600' => 'pvu', 'Phvul.005G127100' => 'pvu', 'Phvul.006G149500' => 'pvu', 'Phvul.006G149600' => 'pvu', 'Phvul.011G071800' => 'pvu', 'Phvul.011G090400' => 'pvu', 'Potri.004G013400' => 'ptr', 'Potri.004G188100' => 'ptr', 'Potri.008G195500' => 'ptr', 'Potri.009G148800' => 'ptr', 'Potri.011G004700' => 'ptr', 'Pp3c17_22810' => 'ppa', 'Pp3c18_4480' => 'ppa', 'Pp3c19_13030' => 'ppa', 'Pp3c1_33620' => 'ppa', 'Pp3c2_9380' => 'ppa', 'PRCOL_00001023' => 'pco', 'Prupe.3G216300' => 'ppe', 'Prupe.4G019500' => 'ppe', 'Prupe.6G092500' => 'ppe', 'Prupe.6G119200' => 'ppe', 'Psat0s1945g0080' => 'psa', 'Psat0s4167g0040' => 'psa', 'Psat1g185800' => 'psa', 'Psat4g006440' => 'psa', 'Psat4g006480' => 'psa', 'Psat4g168120' => 'psa', 'Psat5g255680' => 'psa', 'Psat5g261760' => 'psa', 'Psat7g222120' => 'psa', 'PSO063G7252' => 'pso', 'PSO170G4778' => 'pso', 'PSO210G2249' => 'pso', 'PSO339G2411' => 'pso', 'PSO339G2457' => 'pso', 'PSO339G2854' => 'pso', 'PSO339G4288' => 'pso', 'PSO339G4615' => 'pso', 'PSO384G2796' => 'pso', 'PSO384G2940' => 'pso', 'PSO384G4227' => 'pso', 'PSO478G1425' => 'pso', 'PSO541G3863' => 'pso', 'PSO675G0507' => 'pso', 'PSO782G0338' => 'pso', 'PSO832G0644' => 'pso', 'QL01p013664' => 'qlo', 'QL01p036598' => 'qlo', 'QL05p072984' => 'qlo', 'QL08p005768' => 'qlo', 'QL08p032743' => 'qlo', 'QL93p0073_0439' => 'qlo', 'QL93p0073_0444' => 'qlo', 'RcHm_v2.0_Chr5g0002851' => 'rch', 'RcHm_v2.0_Chr5g0055201' => 'rch', 'RcHm_v2.0_Chr5g0061191' => 'rch', 'RcHm_v2.0_Chr7g0203231' => 'rch', 'Rhsim01G0208100' => 'rsi', 'Rhsim01G0208200' => 'rsi', 'Rhsim02G0106500' => 'rsi', 'Rhsim03G0107900' => 'rsi', 'Rhsim06G0163400' => 'rsi', 'Rhsim13G0105200' => 'rsi', 'Sabra04G0006300' => 'sbr', 'Sabra04G0127000' => 'sbr', 'Sabra08G0148700' => 'sbr', 'Sabra09G0117400' => 'sbr', 'SalBow1G3326' => 'sbo', 'SalBow3G3228' => 'sbo', 'SalBow6G1634' => 'sbo', 'SalBow6G3603' => 'sbo', 'SalBow6G5266' => 'sbo', 'SalBow7G2265' => 'sbo', 'SalBow8G0850' => 'sbo', 'SalBow8G2592' => 'sbo', 'Sc05g0009240' => 'sci', 'Sc12g0002300' => 'sci', 'Sc21g0000100' => 'sci', 'Sc21g0004720' => 'sci', 'Sed0002949' => 'sed', 'Sed0004114' => 'sed', 'Sed0004306' => 'sed', 'Sed0006172' => 'sed', 'Sed0008413' => 'sed', 'Sed0013809' => 'sed', 'Sed0019556' => 'sed', 'SEGI_03570' => 'sgi', 'SEGI_07859' => 'sgi', 'SEGI_15042' => 'sgi', 'SEGI_16263' => 'sgi', 'SEGI_16552' => 'sgi', 'SEGI_24331' => 'sgi', 'SEGI_27316' => 'sgi', 'SEGI_29521' => 'sgi', 'SEGI_41342' => 'sgi', 'SGA_v2.0_scaffold27G11617' => 'sas', 'SGA_v2.0_scaffold316G48428' => 'sas', 'SGA_v2.0_scaffold49G18261' => 'sas', 'SGA_v2.0_scaffold7G03831' => 'sas', 'SGA_v2.0_scaffold93G28359' => 'sas', 'SHI02210' => 'shi', 'SHI06028' => 'shi', 'SHI06321' => 'shi', 'SMO111G0012' => 'smo', 'SMO228G0080' => 'smo', 'SMO356G0756' => 'smo', 'Solyc02g080620.3' => 'sly', 'Solyc06g074530.1' => 'sly', 'Solyc11g066890.1' => 'sly', 'Solyc11g072520.3' => 'sly', 'Sopen02g025330' => 'spe', 'Sopen06g031000' => 'spe', 'Sopen09g008240' => 'spe', 'Sopen09g025210' => 'spe', 'Sopen11g026600' => 'spe', 'Sopen11g030170' => 'spe', 'Sp1g10420' => 'spa', 'Sp3g06570' => 'spa', 'Sp4g10660' => 'spa', 'Sp5g16460' => 'spa', 'Sp6g22710' => 'spa', 'TAR365G0112' => 'tar', 'TAR369G0717' => 'tar', 'TAR374G0976' => 'tar', 'TAR623G1128' => 'tar', 'TAR626G1937' => 'tar', 'TAR627G0123' => 'tar', 'TAR628G0305' => 'tar', 'TAR636G1176' => 'tar', 'TAR636G2442' => 'tar', 'THA.LOC104800556' => 'tha', 'THA.LOC104809501' => 'tha', 'THA.LOC104815126' => 'tha', 'THA.LOC104815732' => 'tha', 'THA.LOC104823528' => 'tha', 'Thecc.02G365600' => 'tca', 'Thecc.06G222300' => 'tca', 'Thecc.09G261800' => 'tca', 'Thecc.09G291400' => 'tca', 'Thhalv10003028m.g' => 'esa', 'Thhalv10007886m.g' => 'esa', 'Thhalv10016085m.g' => 'esa', 'Thhalv10016681m.g' => 'esa', 'Thhalv10020951m.g' => 'esa', 'TPR.G15598' => 'tpr', 'TPR.G29305' => 'tpr', 'TPR.G32395' => 'tpr', 'TPR.G36998' => 'tpr', 'TPR.G4227' => 'tpr', 'TWI18G1433' => 'twi', 'TWI31G0755' => 'twi', 'TWI38G0912' => 'twi', 'TWI75G1097' => 'twi', 'TWI75G1619' => 'twi', 'TWI79G1336' => 'twi', 'unitig_0.g943' => 'ugi', 'unitig_0.g944' => 'ugi', 'unitig_22.g6646' => 'ugi', 'unitig_37.g12681' => 'ugi', 'unitig_8.g3290' => 'ugi', 'vmacro03278' => 'vma', 'vmacro12197' => 'vma', 'vmacro14478' => 'vma', 'vmacro15787' => 'vma', 'vmacro15789' => 'vma', 'vmacro15790' => 'vma', 'vmacro15806' => 'vma', 'vmacro22907' => 'vma', 'vmacro22908' => 'vma', 'vmacro22909' => 'vma', 'vmacro23108' => 'vma', 'VMungo0540G0540' => 'vmu', 'VMungo0540G2468' => 'vmu', 'VMungo1080G0390' => 'vmu', 'VMungo1080G1165' => 'vmu', 'VMungo1127G0170' => 'vmu', 'VMungo1127G2099' => 'vmu', 'VMungo1215G3013' => 'vmu', 'Zm00001eb013110' => 'zma', 'Zm00001eb084260' => 'zma', 'Zm00001eb096110' => 'zma', 'Zm00001eb217510' => 'zma', 'Zm00001eb322550' => 'zma', 'Zm00001eb390770' => 'zma', 'Zm00001eb397170' => 'zma', 'Zm00001eb404610' => 'zma', 'Zm00001eb421790' => 'zma' ) $gf_id = 'HOM05D000911' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000911' ) $data_identifier = 'HOM05D000911' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 16, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 5, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 6, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 8, 'nnu' => (int) 16, 'oeu' => (int) 8, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 5, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 16, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421790' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000911', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27780' => 'bna', 'A03p35380' => 'bna', 'A04p21160' => 'bna', 'A05p40570' => 'bna', 'A06p26900' => 'bna', 'A08p33230' => 'bna', 'A09p65960' => 'bna', 'A10p18290' => 'bna', 'Aa31LG1G12990' => 'aar', 'Aa31LG1G2980' => 'aar', 'Aa31LG4G14320' => 'aar', 'Aa31LG7G11800' => 'aar', 'Aa31sc36G50' => 'aar', 'Aa31sc36G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3721' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5459' => 'aag', 'Actinidia03028' => 'ach', 'Actinidia03753' => 'ach', 'Actinidia04187' => 'ach', 'Actinidia05509' => 'ach', 'Actinidia24180' => 'ach', 'Actinidia26906' => 'ach', 'Actinidia37097' => 'ach', 'Actinidia38249' => 'ach', 'Ah.01g003470' => 'amhyb', 'Ah.01g004580' => 'amhyb', 'Ah.01g014850' => 'amhyb', 'Ah.01g016830' => 'amhyb', 'Ah.14g088000' => 'amhyb', 'AL1G22980' => 'aly', 'AL3G18990' => 'aly', 'AL4G22440' => 'aly', 'AL4G33180' => 'aly', 'AL5G22920' => 'aly', 'AL6G33660' => 'aly', 'AL8G20720' => 'aly', 'Aqoxy1G00935' => 'aox', 'Aqoxy1G02094' => 'aox', 'Aqoxy2G01239' => 'aox', 'Aqoxy4G01870' => 'aox', 'Aqoxy7G00450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.36ZVTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71EM27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5D6C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH3WRE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3NCM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RIM768' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YB5YRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z36GDV' => 'arhy', 'AT1G08250' => 'ath', 'AT1G11790' => 'ath', 'AT2G27820' => 'ath', 'AT3G07630' => 'ath', 'AT3G44720' => 'ath', 'AT5G22630' => 'ath', 'ATR0693G304' => 'atr', 'ATR0794G109' => 'atr', 'ATR0820G120' => 'atr', 'ATR1159G064' => 'atr', 'Atru.chr10.2239' => 'acertr', 'Atru.chr3.3371' => 'acertr', 'Atru.chr6.3202' => 'acertr', 'AUR62006499' => 'cqu', 'AUR62012718' => 'cqu', 'AUR62021938' => 'cqu', 'AUR62023932' => 'cqu', 'AUR62025034' => 'cqu', 'AUR62025035' => 'cqu', 'AUR62038307' => 'cqu', 'AUR62043466' => 'cqu', 'BcaB02g10748' => 'bca', 'BcaB03g13231' => 'bca', 'BcaB03g14689' => 'bca', 'BcaB05g22716' => 'bca', 'BcaB06g28172' => 'bca', 'BcaB08g36413' => 'bca', 'BcaC01g02186' => 'bca', 'BcaC01g04272' => 'bca', 'BcaC02g08080' => 'bca', 'BcaC02g08227' => 'bca', 'BcaC03g13901' => 'bca', 'BcaC04g19593' => 'bca', 'BcaC04g20874' => 'bca', 'BcaC05g29557' => 'bca', 'BcaC06g35505' => 'bca', 'BcaC07g41954' => 'bca', 'BcaC07g41955' => 'bca', 'BcaC07g41956' => 'bca', 'BcaC07g42519' => 'bca', 'BcaC07g42520' => 'bca', 'BcaC07g42523' => 'bca', 'BcaC07g42524' => 'bca', 'BcaC07g42525' => 'bca', 'BcaC08g47480' => 'bca', 'BcaC08g47481' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00530' => 'bna', 'BolC2t07178H' => 'bol', 'BolC3t16567H' => 'bol', 'BolC4t27234H' => 'bol', 'BolC5t29728H' => 'bol', 'BolC5t34622H' => 'bol', 'BolC6t40321H' => 'bol', 'BolC7t42028H' => 'bol', 'BolC8t49125H' => 'bol', 'BolC8t52538H' => 'bol', 'BolC8t52539H' => 'bol', 'BolC9t56681H' => 'bol', 'BolC9t58266H' => 'bol', 'BolSC21t60294H' => 'bol', 'BraA02t05670Z' => 'bra', 'BraA03t12716Z' => 'bra', 'BraA04t17685Z' => 'bra', 'BraA05t22788Z' => 'bra', 'BraA06t24032Z' => 'bra', 'BraA06t25625Z' => 'bra', 'BraA07t27930Z' => 'bra', 'BraA08t35242Z' => 'bra', 'BraA09t38609Z' => 'bra', 'BraA10t43905Z' => 'bra', 'C02p11060' => 'bna', 'C03p42990' => 'bna', 'C03p67310' => 'bna', 'C04p56990' => 'bna', 'C04p58660' => 'bna', 'C05p09890' => 'bna', 'C05p59680' => 'bna', 'C06p19830' => 'bna', 'C06p53040' => 'bna', 'C07p15230' => 'bna', 'C08p50070' => 'bna', 'C08p50090' => 'bna', 'C09p38330' => 'bna', 'C09p53940' => 'bna', 'CAN.G1014.1' => 'can', 'CAN.G644.30' => 'can', 'CAN.G84.47' => 'can', 'CAN.G919.8' => 'can', 'CANSAT54G0113' => 'cansat', 'CANSAT54G1286' => 'cansat', 'CANSAT64G1020' => 'cansat', 'CARHR008080' => 'chi', 'CARHR008090' => 'chi', 'CARHR012130' => 'chi', 'CARHR038390' => 'chi', 'CARHR082330' => 'chi', 'CARHR120520' => 'chi', 'CARHR151470' => 'chi', 'CARHR190950' => 'chi', 'Carub.0001s0760' => 'cru', 'Carub.0001s1146' => 'cru', 'Carub.0003s0721' => 'cru', 'Carub.0004s0858' => 'cru', 'Carub.0005s1040' => 'cru', 'Carub.0006s2035' => 'cru', 'Carub.0015s0005' => 'cru', 'Ca_01607_v3' => 'car', 'Ca_01677_v3' => 'car', 'Ca_06087_v3' => 'car', 'Ca_19238_v3' => 'car', 'Ca_19373_v3' => 'car', 'Ca_21079_v3' => 'car', 'CBR_g54016' => 'cbr', 'CBR_g54018' => 'cbr', 'CBR_g54020' => 'cbr', 'Cc01_g09780' => 'ccan', 'Cc01_g11680' => 'ccan', 'Cc02_g15610' => 'ccan', 'Cc05_g04350' => 'ccan', 'Cc09_g01580' => 'ccan', 'CDE01G0795' => 'cde', 'CDE02G2024' => 'cde', 'CDE02G2260' => 'cde', 'CDE02G4561' => 'cde', 'CDE05G2733' => 'cde', 'CDE05G3422' => 'cde', 'CDE06G2003' => 'cde', 'CDE08G0576' => 'cde', 'CDE09G0048' => 'cde', 'CDE11G0805' => 'cde', 'Cfa003644' => 'cfa', 'Cfa006290' => 'cfa', 'Cfa010080' => 'cfa', 'Cfa011376' => 'cfa', 'Cfa011576' => 'cfa', 'Cfa011577' => 'cfa', 'Cfa014389' => 'cfa', 'Ciclev10006044m.g' => 'ccl', 'Ciclev10006954m.g' => 'ccl', 'Ciclev10015131m.g' => 'ccl', 'Ciclev10015580m.g' => 'ccl', 'Ciclev10028359m.g' => 'ccl', 'Ciclev10028573m.g' => 'ccl', 'CiPaw.03G159300' => 'cil', 'CiPaw.04G115100' => 'cil', 'CiPaw.09G092800' => 'cil', 'CiPaw.10G071800' => 'cil', 'CiPaw.13G105800' => 'cil', 'CiPaw.13G141000' => 'cil', 'CiPaw.14G103400' => 'cil', 'ClCG01G012700' => 'cla', 'ClCG01G012720' => 'cla', 'ClCG01G021920' => 'cla', 'ClCG02G008870' => 'cla', 'ClCG02G020840' => 'cla', 'ClCG02G021930' => 'cla', 'COL.COLO4_19302' => 'col', 'COL.COLO4_25262' => 'col', 'COL.COLO4_31788' => 'col', 'Cpa.g.c34684' => 'cpa', 'Cpa.g.c36520.1' => 'cpa', 'Cpa.g.c45626' => 'cpa', 'Cpa.g.sc121.17' => 'cpa', 'Cpa.g.sc13.22' => 'cpa', 'Cpa.g.sc87.88' => 'cpa', 'Cre06.g261800' => 'cre', 'CsaV3_1G014500' => 'csa', 'CsaV3_1G014510' => 'csa', 'CsaV3_2G034880' => 'csa', 'CsaV3_6G014760' => 'csa', 'CsaV3_6G021500' => 'csa', 'CsaV3_6G048980' => 'csa', 'CSS0002511' => 'camsi', 'CSS0007556' => 'camsi', 'CSS0008532' => 'camsi', 'CSS0009709' => 'camsi', 'CSS0010486' => 'camsi', 'CSS0016768' => 'camsi', 'CSS0023512' => 'camsi', 'CSS0025341' => 'camsi', 'CSS0027999' => 'camsi', 'CSS0028944' => 'camsi', 'CSS0032292' => 'camsi', 'CSS0032464' => 'camsi', 'CSS0037153' => 'camsi', 'CSS0039256' => 'camsi', 'CSS0048392' => 'camsi', 'CSS0050458' => 'camsi', 'DCAR_004224' => 'dca', 'DCAR_006147' => 'dca', 'DCAR_006465' => 'dca', 'DCAR_008159' => 'dca', 'DCAR_012164' => 'dca', 'DCAR_019764' => 'dca', 'Dinv05418' => 'din', 'Dinv10839' => 'din', 'Dinv12521' => 'din', 'Dinv13900' => 'din', 'Dinv29426' => 'din', 'Duzib150G0263' => 'dzi', 'Duzib168G1178' => 'dzi', 'Duzib168G1924' => 'dzi', 'Duzib170G0299' => 'dzi', 'Duzib170G0813' => 'dzi', 'Duzib235G1128' => 'dzi', 'Duzib248G1060' => 'dzi', 'ECA232G1910' => 'eca', 'ECA233G4621' => 'eca', 'ECA238G1216' => 'eca', 'ECA238G1784' => 'eca', 'ECA248G1242' => 'eca', 'EL10Ac8g20071' => 'bvu', 'EL10Ac9g21086' => 'bvu', 'EL10Ac9g22407' => 'bvu', 'EL10Ac9g22412' => 'bvu', 'Eucgr.A01119' => 'egr', 'Eucgr.E04043' => 'egr', 'Eucgr.J00428' => 'egr', 'Eucgr.J00958' => 'egr', 'FAN11G3091' => 'fan', 'FAN11G3651' => 'fan', 'FAN16G2566' => 'fan', 'FAN21G3155' => 'fan', 'FAN21G3400' => 'fan', 'FAN21G3543' => 'fan', 'FAN25G0234' => 'fan', 'FAN25G1422' => 'fan', 'FAN25G3392' => 'fan', 'FvH4_3g01940' => 'fve', 'FvH4_3g29870' => 'fve', 'FvH4_3g33680' => 'fve', 'Glyma.09G004200' => 'gma', 'Glyma.11G151288' => 'gma', 'Glyma.11G189100' => 'gma', 'Glyma.12G072500' => 'gma', 'Glyma.12G085500' => 'gma', 'Glyma.12G181800' => 'gma', 'Glyma.12G193000' => 'gma', 'Glyma.13G309300' => 'gma', 'Glyma.13G319000' => 'gma', 'Glyma.17G012600' => 'gma', 'Gohir.A06G148600' => 'ghi', 'Gohir.A07G115800' => 'ghi', 'Gohir.A08G003600' => 'ghi', 'Gohir.A09G093300' => 'ghi', 'Gohir.A09G105400' => 'ghi', 'Gohir.A09G105500' => 'ghi', 'Gohir.D06G154600' => 'ghi', 'Gohir.D07G120200' => 'ghi', 'Gohir.D08G013900' => 'ghi', 'Gohir.D09G093100' => 'ghi', 'Gohir.D09G102200' => 'ghi', 'Gohir.D09G102300' => 'ghi', 'Gorai.001G129400' => 'gra', 'Gorai.004G008200' => 'gra', 'Gorai.006G109800' => 'gra', 'Gorai.006G119500' => 'gra', 'Gorai.006G121300' => 'gra', 'Gorai.010G180700' => 'gra', 'GSVIVG01012716001' => 'vvi', 'GSVIVG01025118001' => 'vvi', 'GSVIVG01030439001' => 'vvi', 'GSVIVG01031397001' => 'vvi', 'HanXRQChr01g0004201' => 'han', 'HanXRQChr02g0054941' => 'han', 'HanXRQChr05g0141811' => 'han', 'HanXRQChr07g0197751' => 'han', 'HanXRQChr11g0346691' => 'han', 'HanXRQChr13g0396971' => 'han', 'HanXRQChr14g0432951' => 'han', 'HanXRQChr14g0452001' => 'han', 'HanXRQChr15g0496681' => 'han', 'HanXRQChr17g0557491' => 'han', 'HanXRQChr17g0557501' => 'han', 'Haze_06809' => 'cav', 'Haze_12852' => 'cav', 'Haze_15850' => 'cav', 'Haze_23446' => 'cav', 'Haze_23942' => 'cav', 'Haze_23943' => 'cav', 'Hma1.2p1_0091F.1_g046450' => 'hma', 'Hma1.2p1_0128F.1_g059910' => 'hma', 'Hma1.2p1_0249F.1_g102260' => 'hma', 'Hma1.2p1_0453F.1_g156190' => 'hma', 'Hma1.2p1_0695F.1_g204380' => 'hma', 'Hma1.2p1_0749F.1_g212650' => 'hma', 'Hma1.2p1_2156F.1_g315420' => 'hma', 'Hma1.2p1_2686F.1_g326940' => 'hma', 'HPP92_006428' => 'vpl', 'HPP92_012069' => 'vpl', 'HPP92_014129' => 'vpl', 'HPP92_014133' => 'vpl', 'HPP92_017315' => 'vpl', 'HPP92_026445' => 'vpl', 'HPP92_026446' => 'vpl', 'Hund00774' => 'sun', 'Hund07682' => 'sun', 'Hund21413' => 'sun', 'Hund23462' => 'sun', 'Hund23463' => 'sun', 'Lalb_Chr03g0027911' => 'lal', 'Lalb_Chr13g0304271' => 'lal', 'Lalb_Chr19g0137471' => 'lal', 'Lalb_Chr22g0350651' => 'lal', 'Lalb_Chr24g0395151' => 'lal', 'Lj1A1231T40' => 'lonja', 'Lj1A221T48' => 'lonja', 'Lj1C924T12' => 'lonja', 'Lj2C993G6' => 'lonja', 'Lj3g0005790' => 'lja', 'Lj3g0015432' => 'lja', 'Lj3g0017722' => 'lja', 'Lj3g0018497' => 'lja', 'Lj4g0025071' => 'lja', 'Lsat_1_v5_gn_1_129680' => 'lsa', 'Lsat_1_v5_gn_2_25321' => 'lsa', 'Lsat_1_v5_gn_2_95461' => 'lsa', 'Lsat_1_v5_gn_4_159620' => 'lsa', 'Lsat_1_v5_gn_6_41301' => 'lsa', 'Lsat_1_v5_gn_6_74660' => 'lsa', 'Lsat_1_v5_gn_7_11520' => 'lsa', 'Lsat_1_v5_gn_9_67680' => 'lsa', 'Manes.04G008300' => 'mes', 'Manes.04G008400' => 'mes', 'Manes.04G026500' => 'mes', 'Manes.10G135300' => 'mes', 'Manes.11G157300' => 'mes', 'Manes.12G074000' => 'mes', 'Manes.16G006200' => 'mes', 'Manes.17G026400' => 'mes', 'Mapoly0024s0086' => 'mpo', 'Mapoly0024s0087' => 'mpo', 'Mapoly0071s0057' => 'mpo', 'Mapoly0204s0012' => 'mpo', 'MBI04_g37681_MAGBIO' => 'mbi', 'MBI05_g17779_MAGBIO' => 'mbi', 'MBI12_g31184_MAGBIO' => 'mbi', 'MBI17_g11083_MAGBIO' => 'mbi', 'MBI18_g03883_MAGBIO' => 'mbi', 'MBI18_g28940_MAGBIO' => 'mbi', 'MCO01G690' => 'mco', 'MD03G1109900' => 'mdo', 'MD03G1134800' => 'mdo', 'MD05G1348000' => 'mdo', 'MD10G1322400' => 'mdo', 'MD11G1123300' => 'mdo', 'MD11G1157600' => 'mdo', 'Medtr2g084875' => 'mtr', 'Medtr2g088130' => 'mtr', 'Medtr4g055310' => 'mtr', 'Medtr4g061070' => 'mtr', 'Medtr4g132250' => 'mtr', 'MELO3C004795.2' => 'cme', 'MELO3C004797.2' => 'cme', 'MELO3C007396.2' => 'cme', 'MELO3C019277.2' => 'cme', 'MELO3C021449.2' => 'cme', 'MELO3C025736.2' => 'cme', 'Migut.D02175' => 'egut', 'Migut.H01573' => 'egut', 'Migut.M01327' => 'egut', 'Migut.N02513' => 'egut', 'MSTRG.14638' => 'ama', 'MSTRG.18632' => 'ama', 'MSTRG.7203' => 'ama', 'Nitab4.5_0000533g0140' => 'nta', 'Nitab4.5_0000888g0150' => 'nta', 'Nitab4.5_0001453g0040' => 'nta', 'Nitab4.5_0002827g0090' => 'nta', 'Nitab4.5_0003082g0040' => 'nta', 'Nitab4.5_0007799g0040' => 'nta', 'Nitab4.5_0008983g0010' => 'nta', 'Nitab4.5_0009017g0020' => 'nta', 'Nn1g02132' => 'nnu', 'Nn1g03492' => 'nnu', 'Nn1g03493' => 'nnu', 'Nn1g03494' => 'nnu', 'Nn1g07164' => 'nnu', 'Nn1g07291' => 'nnu', 'Nn2g10655' => 'nnu', 'Nn2g11652' => 'nnu', 'Nn2g14008' => 'nnu', 'Nn3g17476' => 'nnu', 'Nn3g17477' => 'nnu', 'Nn4g22370' => 'nnu', 'Nn4g25255' => 'nnu', 'Nn5g27755' => 'nnu', 'Nn6g34260' => 'nnu', 'Nn6g35041' => 'nnu', 'Oeu005924.1' => 'oeu', 'Oeu008383.1' => 'oeu', 'Oeu014928.1' => 'oeu', 'Oeu019889.1' => 'oeu', 'Oeu022271.1' => 'oeu', 'Oeu025271.1' => 'oeu', 'Oeu036302.1' => 'oeu', 'Oeu044100.1' => 'oeu', 'Os01g0528300' => 'osa', 'Os03g0286200' => 'osa', 'Os04g0406600' => 'osa', 'Os07g0512000' => 'osa', 'Os07g0694600' => 'osa', 'Os08g0411000' => 'osa', 'Os09g0565700' => 'osa', 'Os09g0566050' => 'osa', 'Os10g0523700' => 'osa', 'Peaxi162Scf00002g00514' => 'pax', 'Peaxi162Scf00047g01817' => 'pax', 'Peaxi162Scf00114g00001' => 'pax', 'Peaxi162Scf00147g00613' => 'pax', 'Peaxi162Scf00389g00425' => 'pax', 'PGR042G1139' => 'pgr', 'PGR042G3273' => 'pgr', 'PGR102G2180' => 'pgr', 'PGR119G0234' => 'pgr', 'PGR119G0668' => 'pgr', 'PGSC0003DMG400007122' => 'stu', 'PGSC0003DMG400016478' => 'stu', 'PGSC0003DMG400025374' => 'stu', 'PGSC0003DMG400026536' => 'stu', 'Phvul.003G079600' => 'pvu', 'Phvul.005G115600' => 'pvu', 'Phvul.005G127100' => 'pvu', 'Phvul.006G149500' => 'pvu', 'Phvul.006G149600' => 'pvu', 'Phvul.011G071800' => 'pvu', 'Phvul.011G090400' => 'pvu', 'Potri.004G013400' => 'ptr', 'Potri.004G188100' => 'ptr', 'Potri.008G195500' => 'ptr', 'Potri.009G148800' => 'ptr', 'Potri.011G004700' => 'ptr', 'Pp3c17_22810' => 'ppa', 'Pp3c18_4480' => 'ppa', 'Pp3c19_13030' => 'ppa', 'Pp3c1_33620' => 'ppa', 'Pp3c2_9380' => 'ppa', 'PRCOL_00001023' => 'pco', 'Prupe.3G216300' => 'ppe', 'Prupe.4G019500' => 'ppe', 'Prupe.6G092500' => 'ppe', 'Prupe.6G119200' => 'ppe', 'Psat0s1945g0080' => 'psa', 'Psat0s4167g0040' => 'psa', 'Psat1g185800' => 'psa', 'Psat4g006440' => 'psa', 'Psat4g006480' => 'psa', 'Psat4g168120' => 'psa', 'Psat5g255680' => 'psa', 'Psat5g261760' => 'psa', 'Psat7g222120' => 'psa', 'PSO063G7252' => 'pso', 'PSO170G4778' => 'pso', 'PSO210G2249' => 'pso', 'PSO339G2411' => 'pso', 'PSO339G2457' => 'pso', 'PSO339G2854' => 'pso', 'PSO339G4288' => 'pso', 'PSO339G4615' => 'pso', 'PSO384G2796' => 'pso', 'PSO384G2940' => 'pso', 'PSO384G4227' => 'pso', 'PSO478G1425' => 'pso', 'PSO541G3863' => 'pso', 'PSO675G0507' => 'pso', 'PSO782G0338' => 'pso', 'PSO832G0644' => 'pso', 'QL01p013664' => 'qlo', 'QL01p036598' => 'qlo', 'QL05p072984' => 'qlo', 'QL08p005768' => 'qlo', 'QL08p032743' => 'qlo', 'QL93p0073_0439' => 'qlo', 'QL93p0073_0444' => 'qlo', 'RcHm_v2.0_Chr5g0002851' => 'rch', 'RcHm_v2.0_Chr5g0055201' => 'rch', 'RcHm_v2.0_Chr5g0061191' => 'rch', 'RcHm_v2.0_Chr7g0203231' => 'rch', 'Rhsim01G0208100' => 'rsi', 'Rhsim01G0208200' => 'rsi', 'Rhsim02G0106500' => 'rsi', 'Rhsim03G0107900' => 'rsi', 'Rhsim06G0163400' => 'rsi', 'Rhsim13G0105200' => 'rsi', 'Sabra04G0006300' => 'sbr', 'Sabra04G0127000' => 'sbr', 'Sabra08G0148700' => 'sbr', 'Sabra09G0117400' => 'sbr', 'SalBow1G3326' => 'sbo', 'SalBow3G3228' => 'sbo', 'SalBow6G1634' => 'sbo', 'SalBow6G3603' => 'sbo', 'SalBow6G5266' => 'sbo', 'SalBow7G2265' => 'sbo', 'SalBow8G0850' => 'sbo', 'SalBow8G2592' => 'sbo', 'Sc05g0009240' => 'sci', 'Sc12g0002300' => 'sci', 'Sc21g0000100' => 'sci', 'Sc21g0004720' => 'sci', 'Sed0002949' => 'sed', 'Sed0004114' => 'sed', 'Sed0004306' => 'sed', 'Sed0006172' => 'sed', 'Sed0008413' => 'sed', 'Sed0013809' => 'sed', 'Sed0019556' => 'sed', 'SEGI_03570' => 'sgi', 'SEGI_07859' => 'sgi', 'SEGI_15042' => 'sgi', 'SEGI_16263' => 'sgi', 'SEGI_16552' => 'sgi', 'SEGI_24331' => 'sgi', 'SEGI_27316' => 'sgi', 'SEGI_29521' => 'sgi', 'SEGI_41342' => 'sgi', 'SGA_v2.0_scaffold27G11617' => 'sas', 'SGA_v2.0_scaffold316G48428' => 'sas', 'SGA_v2.0_scaffold49G18261' => 'sas', 'SGA_v2.0_scaffold7G03831' => 'sas', 'SGA_v2.0_scaffold93G28359' => 'sas', 'SHI02210' => 'shi', 'SHI06028' => 'shi', 'SHI06321' => 'shi', 'SMO111G0012' => 'smo', 'SMO228G0080' => 'smo', 'SMO356G0756' => 'smo', 'Solyc02g080620.3' => 'sly', 'Solyc06g074530.1' => 'sly', 'Solyc11g066890.1' => 'sly', 'Solyc11g072520.3' => 'sly', 'Sopen02g025330' => 'spe', 'Sopen06g031000' => 'spe', 'Sopen09g008240' => 'spe', 'Sopen09g025210' => 'spe', 'Sopen11g026600' => 'spe', 'Sopen11g030170' => 'spe', 'Sp1g10420' => 'spa', 'Sp3g06570' => 'spa', 'Sp4g10660' => 'spa', 'Sp5g16460' => 'spa', 'Sp6g22710' => 'spa', 'TAR365G0112' => 'tar', 'TAR369G0717' => 'tar', 'TAR374G0976' => 'tar', 'TAR623G1128' => 'tar', 'TAR626G1937' => 'tar', 'TAR627G0123' => 'tar', 'TAR628G0305' => 'tar', 'TAR636G1176' => 'tar', 'TAR636G2442' => 'tar', 'THA.LOC104800556' => 'tha', 'THA.LOC104809501' => 'tha', 'THA.LOC104815126' => 'tha', 'THA.LOC104815732' => 'tha', 'THA.LOC104823528' => 'tha', 'Thecc.02G365600' => 'tca', 'Thecc.06G222300' => 'tca', 'Thecc.09G261800' => 'tca', 'Thecc.09G291400' => 'tca', 'Thhalv10003028m.g' => 'esa', 'Thhalv10007886m.g' => 'esa', 'Thhalv10016085m.g' => 'esa', 'Thhalv10016681m.g' => 'esa', 'Thhalv10020951m.g' => 'esa', 'TPR.G15598' => 'tpr', 'TPR.G29305' => 'tpr', 'TPR.G32395' => 'tpr', 'TPR.G36998' => 'tpr', 'TPR.G4227' => 'tpr', 'TWI18G1433' => 'twi', 'TWI31G0755' => 'twi', 'TWI38G0912' => 'twi', 'TWI75G1097' => 'twi', 'TWI75G1619' => 'twi', 'TWI79G1336' => 'twi', 'unitig_0.g943' => 'ugi', 'unitig_0.g944' => 'ugi', 'unitig_22.g6646' => 'ugi', 'unitig_37.g12681' => 'ugi', 'unitig_8.g3290' => 'ugi', 'vmacro03278' => 'vma', 'vmacro12197' => 'vma', 'vmacro14478' => 'vma', 'vmacro15787' => 'vma', 'vmacro15789' => 'vma', 'vmacro15790' => 'vma', 'vmacro15806' => 'vma', 'vmacro22907' => 'vma', 'vmacro22908' => 'vma', 'vmacro22909' => 'vma', 'vmacro23108' => 'vma', 'VMungo0540G0540' => 'vmu', 'VMungo0540G2468' => 'vmu', 'VMungo1080G0390' => 'vmu', 'VMungo1080G1165' => 'vmu', 'VMungo1127G0170' => 'vmu', 'VMungo1127G2099' => 'vmu', 'VMungo1215G3013' => 'vmu', 'Zm00001eb013110' => 'zma', 'Zm00001eb084260' => 'zma', 'Zm00001eb096110' => 'zma', 'Zm00001eb217510' => 'zma', 'Zm00001eb322550' => 'zma', 'Zm00001eb390770' => 'zma', 'Zm00001eb397170' => 'zma', 'Zm00001eb404610' => 'zma', 'Zm00001eb421790' => 'zma' ), 'gf_id' => 'HOM05D000911', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000911' ), 'data_identifier' => 'HOM05D000911', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000911', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27780' => 'bna', 'A03p35380' => 'bna', 'A04p21160' => 'bna', 'A05p40570' => 'bna', 'A06p26900' => 'bna', 'A08p33230' => 'bna', 'A09p65960' => 'bna', 'A10p18290' => 'bna', 'Aa31LG1G12990' => 'aar', 'Aa31LG1G2980' => 'aar', 'Aa31LG4G14320' => 'aar', 'Aa31LG7G11800' => 'aar', 'Aa31sc36G50' => 'aar', 'Aa31sc36G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3721' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5459' => 'aag', 'Actinidia03028' => 'ach', 'Actinidia03753' => 'ach', 'Actinidia04187' => 'ach', 'Actinidia05509' => 'ach', 'Actinidia24180' => 'ach', 'Actinidia26906' => 'ach', 'Actinidia37097' => 'ach', 'Actinidia38249' => 'ach', 'Ah.01g003470' => 'amhyb', 'Ah.01g004580' => 'amhyb', 'Ah.01g014850' => 'amhyb', 'Ah.01g016830' => 'amhyb', 'Ah.14g088000' => 'amhyb', 'AL1G22980' => 'aly', 'AL3G18990' => 'aly', 'AL4G22440' => 'aly', 'AL4G33180' => 'aly', 'AL5G22920' => 'aly', 'AL6G33660' => 'aly', 'AL8G20720' => 'aly', 'Aqoxy1G00935' => 'aox', 'Aqoxy1G02094' => 'aox', 'Aqoxy2G01239' => 'aox', 'Aqoxy4G01870' => 'aox', 'Aqoxy7G00450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.36ZVTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71EM27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5D6C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH3WRE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3NCM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RIM768' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YB5YRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z36GDV' => 'arhy', 'AT1G08250' => 'ath', 'AT1G11790' => 'ath', 'AT2G27820' => 'ath', 'AT3G07630' => 'ath', 'AT3G44720' => 'ath', 'AT5G22630' => 'ath', 'ATR0693G304' => 'atr', 'ATR0794G109' => 'atr', 'ATR0820G120' => 'atr', 'ATR1159G064' => 'atr', 'Atru.chr10.2239' => 'acertr', 'Atru.chr3.3371' => 'acertr', 'Atru.chr6.3202' => 'acertr', 'AUR62006499' => 'cqu', 'AUR62012718' => 'cqu', 'AUR62021938' => 'cqu', 'AUR62023932' => 'cqu', 'AUR62025034' => 'cqu', 'AUR62025035' => 'cqu', 'AUR62038307' => 'cqu', 'AUR62043466' => 'cqu', 'BcaB02g10748' => 'bca', 'BcaB03g13231' => 'bca', 'BcaB03g14689' => 'bca', 'BcaB05g22716' => 'bca', 'BcaB06g28172' => 'bca', 'BcaB08g36413' => 'bca', 'BcaC01g02186' => 'bca', 'BcaC01g04272' => 'bca', 'BcaC02g08080' => 'bca', 'BcaC02g08227' => 'bca', 'BcaC03g13901' => 'bca', 'BcaC04g19593' => 'bca', 'BcaC04g20874' => 'bca', 'BcaC05g29557' => 'bca', 'BcaC06g35505' => 'bca', 'BcaC07g41954' => 'bca', 'BcaC07g41955' => 'bca', 'BcaC07g41956' => 'bca', 'BcaC07g42519' => 'bca', 'BcaC07g42520' => 'bca', 'BcaC07g42523' => 'bca', 'BcaC07g42524' => 'bca', 'BcaC07g42525' => 'bca', 'BcaC08g47480' => 'bca', 'BcaC08g47481' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00530' => 'bna', 'BolC2t07178H' => 'bol', 'BolC3t16567H' => 'bol', 'BolC4t27234H' => 'bol', 'BolC5t29728H' => 'bol', 'BolC5t34622H' => 'bol', 'BolC6t40321H' => 'bol', 'BolC7t42028H' => 'bol', 'BolC8t49125H' => 'bol', 'BolC8t52538H' => 'bol', 'BolC8t52539H' => 'bol', 'BolC9t56681H' => 'bol', 'BolC9t58266H' => 'bol', 'BolSC21t60294H' => 'bol', 'BraA02t05670Z' => 'bra', 'BraA03t12716Z' => 'bra', 'BraA04t17685Z' => 'bra', 'BraA05t22788Z' => 'bra', 'BraA06t24032Z' => 'bra', 'BraA06t25625Z' => 'bra', 'BraA07t27930Z' => 'bra', 'BraA08t35242Z' => 'bra', 'BraA09t38609Z' => 'bra', 'BraA10t43905Z' => 'bra', 'C02p11060' => 'bna', 'C03p42990' => 'bna', 'C03p67310' => 'bna', 'C04p56990' => 'bna', 'C04p58660' => 'bna', 'C05p09890' => 'bna', 'C05p59680' => 'bna', 'C06p19830' => 'bna', 'C06p53040' => 'bna', 'C07p15230' => 'bna', 'C08p50070' => 'bna', 'C08p50090' => 'bna', 'C09p38330' => 'bna', 'C09p53940' => 'bna', 'CAN.G1014.1' => 'can', 'CAN.G644.30' => 'can', 'CAN.G84.47' => 'can', 'CAN.G919.8' => 'can', 'CANSAT54G0113' => 'cansat', 'CANSAT54G1286' => 'cansat', 'CANSAT64G1020' => 'cansat', 'CARHR008080' => 'chi', 'CARHR008090' => 'chi', 'CARHR012130' => 'chi', 'CARHR038390' => 'chi', 'CARHR082330' => 'chi', 'CARHR120520' => 'chi', 'CARHR151470' => 'chi', 'CARHR190950' => 'chi', 'Carub.0001s0760' => 'cru', 'Carub.0001s1146' => 'cru', 'Carub.0003s0721' => 'cru', 'Carub.0004s0858' => 'cru', 'Carub.0005s1040' => 'cru', 'Carub.0006s2035' => 'cru', 'Carub.0015s0005' => 'cru', 'Ca_01607_v3' => 'car', 'Ca_01677_v3' => 'car', 'Ca_06087_v3' => 'car', 'Ca_19238_v3' => 'car', 'Ca_19373_v3' => 'car', 'Ca_21079_v3' => 'car', 'CBR_g54016' => 'cbr', 'CBR_g54018' => 'cbr', 'CBR_g54020' => 'cbr', 'Cc01_g09780' => 'ccan', 'Cc01_g11680' => 'ccan', 'Cc02_g15610' => 'ccan', 'Cc05_g04350' => 'ccan', 'Cc09_g01580' => 'ccan', 'CDE01G0795' => 'cde', 'CDE02G2024' => 'cde', 'CDE02G2260' => 'cde', 'CDE02G4561' => 'cde', 'CDE05G2733' => 'cde', 'CDE05G3422' => 'cde', 'CDE06G2003' => 'cde', 'CDE08G0576' => 'cde', 'CDE09G0048' => 'cde', 'CDE11G0805' => 'cde', 'Cfa003644' => 'cfa', 'Cfa006290' => 'cfa', 'Cfa010080' => 'cfa', 'Cfa011376' => 'cfa', 'Cfa011576' => 'cfa', 'Cfa011577' => 'cfa', 'Cfa014389' => 'cfa', 'Ciclev10006044m.g' => 'ccl', 'Ciclev10006954m.g' => 'ccl', 'Ciclev10015131m.g' => 'ccl', 'Ciclev10015580m.g' => 'ccl', 'Ciclev10028359m.g' => 'ccl', 'Ciclev10028573m.g' => 'ccl', 'CiPaw.03G159300' => 'cil', 'CiPaw.04G115100' => 'cil', 'CiPaw.09G092800' => 'cil', 'CiPaw.10G071800' => 'cil', 'CiPaw.13G105800' => 'cil', 'CiPaw.13G141000' => 'cil', 'CiPaw.14G103400' => 'cil', 'ClCG01G012700' => 'cla', 'ClCG01G012720' => 'cla', 'ClCG01G021920' => 'cla', 'ClCG02G008870' => 'cla', 'ClCG02G020840' => 'cla', 'ClCG02G021930' => 'cla', 'COL.COLO4_19302' => 'col', 'COL.COLO4_25262' => 'col', 'COL.COLO4_31788' => 'col', 'Cpa.g.c34684' => 'cpa', 'Cpa.g.c36520.1' => 'cpa', 'Cpa.g.c45626' => 'cpa', 'Cpa.g.sc121.17' => 'cpa', 'Cpa.g.sc13.22' => 'cpa', 'Cpa.g.sc87.88' => 'cpa', 'Cre06.g261800' => 'cre', 'CsaV3_1G014500' => 'csa', 'CsaV3_1G014510' => 'csa', 'CsaV3_2G034880' => 'csa', 'CsaV3_6G014760' => 'csa', 'CsaV3_6G021500' => 'csa', 'CsaV3_6G048980' => 'csa', 'CSS0002511' => 'camsi', 'CSS0007556' => 'camsi', 'CSS0008532' => 'camsi', 'CSS0009709' => 'camsi', 'CSS0010486' => 'camsi', 'CSS0016768' => 'camsi', 'CSS0023512' => 'camsi', 'CSS0025341' => 'camsi', 'CSS0027999' => 'camsi', 'CSS0028944' => 'camsi', 'CSS0032292' => 'camsi', 'CSS0032464' => 'camsi', 'CSS0037153' => 'camsi', 'CSS0039256' => 'camsi', 'CSS0048392' => 'camsi', 'CSS0050458' => 'camsi', 'DCAR_004224' => 'dca', 'DCAR_006147' => 'dca', 'DCAR_006465' => 'dca', 'DCAR_008159' => 'dca', 'DCAR_012164' => 'dca', 'DCAR_019764' => 'dca', 'Dinv05418' => 'din', 'Dinv10839' => 'din', 'Dinv12521' => 'din', 'Dinv13900' => 'din', 'Dinv29426' => 'din', 'Duzib150G0263' => 'dzi', 'Duzib168G1178' => 'dzi', 'Duzib168G1924' => 'dzi', 'Duzib170G0299' => 'dzi', 'Duzib170G0813' => 'dzi', 'Duzib235G1128' => 'dzi', 'Duzib248G1060' => 'dzi', 'ECA232G1910' => 'eca', 'ECA233G4621' => 'eca', 'ECA238G1216' => 'eca', 'ECA238G1784' => 'eca', 'ECA248G1242' => 'eca', 'EL10Ac8g20071' => 'bvu', 'EL10Ac9g21086' => 'bvu', 'EL10Ac9g22407' => 'bvu', 'EL10Ac9g22412' => 'bvu', 'Eucgr.A01119' => 'egr', 'Eucgr.E04043' => 'egr', 'Eucgr.J00428' => 'egr', 'Eucgr.J00958' => 'egr', 'FAN11G3091' => 'fan', 'FAN11G3651' => 'fan', 'FAN16G2566' => 'fan', 'FAN21G3155' => 'fan', 'FAN21G3400' => 'fan', 'FAN21G3543' => 'fan', 'FAN25G0234' => 'fan', 'FAN25G1422' => 'fan', 'FAN25G3392' => 'fan', 'FvH4_3g01940' => 'fve', 'FvH4_3g29870' => 'fve', 'FvH4_3g33680' => 'fve', 'Glyma.09G004200' => 'gma', 'Glyma.11G151288' => 'gma', 'Glyma.11G189100' => 'gma', 'Glyma.12G072500' => 'gma', 'Glyma.12G085500' => 'gma', 'Glyma.12G181800' => 'gma', 'Glyma.12G193000' => 'gma', 'Glyma.13G309300' => 'gma', 'Glyma.13G319000' => 'gma', 'Glyma.17G012600' => 'gma', 'Gohir.A06G148600' => 'ghi', 'Gohir.A07G115800' => 'ghi', 'Gohir.A08G003600' => 'ghi', 'Gohir.A09G093300' => 'ghi', 'Gohir.A09G105400' => 'ghi', 'Gohir.A09G105500' => 'ghi', 'Gohir.D06G154600' => 'ghi', 'Gohir.D07G120200' => 'ghi', 'Gohir.D08G013900' => 'ghi', 'Gohir.D09G093100' => 'ghi', 'Gohir.D09G102200' => 'ghi', 'Gohir.D09G102300' => 'ghi', 'Gorai.001G129400' => 'gra', 'Gorai.004G008200' => 'gra', 'Gorai.006G109800' => 'gra', 'Gorai.006G119500' => 'gra', 'Gorai.006G121300' => 'gra', 'Gorai.010G180700' => 'gra', 'GSVIVG01012716001' => 'vvi', 'GSVIVG01025118001' => 'vvi', 'GSVIVG01030439001' => 'vvi', 'GSVIVG01031397001' => 'vvi', 'HanXRQChr01g0004201' => 'han', 'HanXRQChr02g0054941' => 'han', 'HanXRQChr05g0141811' => 'han', 'HanXRQChr07g0197751' => 'han', 'HanXRQChr11g0346691' => 'han', 'HanXRQChr13g0396971' => 'han', 'HanXRQChr14g0432951' => 'han', 'HanXRQChr14g0452001' => 'han', 'HanXRQChr15g0496681' => 'han', 'HanXRQChr17g0557491' => 'han', 'HanXRQChr17g0557501' => 'han', 'Haze_06809' => 'cav', 'Haze_12852' => 'cav', 'Haze_15850' => 'cav', 'Haze_23446' => 'cav', 'Haze_23942' => 'cav', 'Haze_23943' => 'cav', 'Hma1.2p1_0091F.1_g046450' => 'hma', 'Hma1.2p1_0128F.1_g059910' => 'hma', 'Hma1.2p1_0249F.1_g102260' => 'hma', 'Hma1.2p1_0453F.1_g156190' => 'hma', 'Hma1.2p1_0695F.1_g204380' => 'hma', 'Hma1.2p1_0749F.1_g212650' => 'hma', 'Hma1.2p1_2156F.1_g315420' => 'hma', 'Hma1.2p1_2686F.1_g326940' => 'hma', 'HPP92_006428' => 'vpl', 'HPP92_012069' => 'vpl', 'HPP92_014129' => 'vpl', 'HPP92_014133' => 'vpl', 'HPP92_017315' => 'vpl', 'HPP92_026445' => 'vpl', 'HPP92_026446' => 'vpl', 'Hund00774' => 'sun', 'Hund07682' => 'sun', 'Hund21413' => 'sun', 'Hund23462' => 'sun', 'Hund23463' => 'sun', 'Lalb_Chr03g0027911' => 'lal', 'Lalb_Chr13g0304271' => 'lal', 'Lalb_Chr19g0137471' => 'lal', 'Lalb_Chr22g0350651' => 'lal', 'Lalb_Chr24g0395151' => 'lal', 'Lj1A1231T40' => 'lonja', 'Lj1A221T48' => 'lonja', 'Lj1C924T12' => 'lonja', 'Lj2C993G6' => 'lonja', 'Lj3g0005790' => 'lja', 'Lj3g0015432' => 'lja', 'Lj3g0017722' => 'lja', 'Lj3g0018497' => 'lja', 'Lj4g0025071' => 'lja', 'Lsat_1_v5_gn_1_129680' => 'lsa', 'Lsat_1_v5_gn_2_25321' => 'lsa', 'Lsat_1_v5_gn_2_95461' => 'lsa', 'Lsat_1_v5_gn_4_159620' => 'lsa', 'Lsat_1_v5_gn_6_41301' => 'lsa', 'Lsat_1_v5_gn_6_74660' => 'lsa', 'Lsat_1_v5_gn_7_11520' => 'lsa', 'Lsat_1_v5_gn_9_67680' => 'lsa', 'Manes.04G008300' => 'mes', 'Manes.04G008400' => 'mes', 'Manes.04G026500' => 'mes', 'Manes.10G135300' => 'mes', 'Manes.11G157300' => 'mes', 'Manes.12G074000' => 'mes', 'Manes.16G006200' => 'mes', 'Manes.17G026400' => 'mes', 'Mapoly0024s0086' => 'mpo', 'Mapoly0024s0087' => 'mpo', 'Mapoly0071s0057' => 'mpo', 'Mapoly0204s0012' => 'mpo', 'MBI04_g37681_MAGBIO' => 'mbi', 'MBI05_g17779_MAGBIO' => 'mbi', 'MBI12_g31184_MAGBIO' => 'mbi', 'MBI17_g11083_MAGBIO' => 'mbi', 'MBI18_g03883_MAGBIO' => 'mbi', 'MBI18_g28940_MAGBIO' => 'mbi', 'MCO01G690' => 'mco', 'MD03G1109900' => 'mdo', 'MD03G1134800' => 'mdo', 'MD05G1348000' => 'mdo', 'MD10G1322400' => 'mdo', 'MD11G1123300' => 'mdo', 'MD11G1157600' => 'mdo', 'Medtr2g084875' => 'mtr', 'Medtr2g088130' => 'mtr', 'Medtr4g055310' => 'mtr', 'Medtr4g061070' => 'mtr', 'Medtr4g132250' => 'mtr', 'MELO3C004795.2' => 'cme', 'MELO3C004797.2' => 'cme', 'MELO3C007396.2' => 'cme', 'MELO3C019277.2' => 'cme', 'MELO3C021449.2' => 'cme', 'MELO3C025736.2' => 'cme', 'Migut.D02175' => 'egut', 'Migut.H01573' => 'egut', 'Migut.M01327' => 'egut', 'Migut.N02513' => 'egut', 'MSTRG.14638' => 'ama', 'MSTRG.18632' => 'ama', 'MSTRG.7203' => 'ama', 'Nitab4.5_0000533g0140' => 'nta', 'Nitab4.5_0000888g0150' => 'nta', 'Nitab4.5_0001453g0040' => 'nta', 'Nitab4.5_0002827g0090' => 'nta', 'Nitab4.5_0003082g0040' => 'nta', 'Nitab4.5_0007799g0040' => 'nta', 'Nitab4.5_0008983g0010' => 'nta', 'Nitab4.5_0009017g0020' => 'nta', 'Nn1g02132' => 'nnu', 'Nn1g03492' => 'nnu', 'Nn1g03493' => 'nnu', 'Nn1g03494' => 'nnu', 'Nn1g07164' => 'nnu', 'Nn1g07291' => 'nnu', 'Nn2g10655' => 'nnu', 'Nn2g11652' => 'nnu', 'Nn2g14008' => 'nnu', 'Nn3g17476' => 'nnu', 'Nn3g17477' => 'nnu', 'Nn4g22370' => 'nnu', 'Nn4g25255' => 'nnu', 'Nn5g27755' => 'nnu', 'Nn6g34260' => 'nnu', 'Nn6g35041' => 'nnu', 'Oeu005924.1' => 'oeu', 'Oeu008383.1' => 'oeu', 'Oeu014928.1' => 'oeu', 'Oeu019889.1' => 'oeu', 'Oeu022271.1' => 'oeu', 'Oeu025271.1' => 'oeu', 'Oeu036302.1' => 'oeu', 'Oeu044100.1' => 'oeu', 'Os01g0528300' => 'osa', 'Os03g0286200' => 'osa', 'Os04g0406600' => 'osa', 'Os07g0512000' => 'osa', 'Os07g0694600' => 'osa', 'Os08g0411000' => 'osa', 'Os09g0565700' => 'osa', 'Os09g0566050' => 'osa', 'Os10g0523700' => 'osa', 'Peaxi162Scf00002g00514' => 'pax', 'Peaxi162Scf00047g01817' => 'pax', 'Peaxi162Scf00114g00001' => 'pax', 'Peaxi162Scf00147g00613' => 'pax', 'Peaxi162Scf00389g00425' => 'pax', 'PGR042G1139' => 'pgr', 'PGR042G3273' => 'pgr', 'PGR102G2180' => 'pgr', 'PGR119G0234' => 'pgr', 'PGR119G0668' => 'pgr', 'PGSC0003DMG400007122' => 'stu', 'PGSC0003DMG400016478' => 'stu', 'PGSC0003DMG400025374' => 'stu', 'PGSC0003DMG400026536' => 'stu', 'Phvul.003G079600' => 'pvu', 'Phvul.005G115600' => 'pvu', 'Phvul.005G127100' => 'pvu', 'Phvul.006G149500' => 'pvu', 'Phvul.006G149600' => 'pvu', 'Phvul.011G071800' => 'pvu', 'Phvul.011G090400' => 'pvu', 'Potri.004G013400' => 'ptr', 'Potri.004G188100' => 'ptr', 'Potri.008G195500' => 'ptr', 'Potri.009G148800' => 'ptr', 'Potri.011G004700' => 'ptr', 'Pp3c17_22810' => 'ppa', 'Pp3c18_4480' => 'ppa', 'Pp3c19_13030' => 'ppa', 'Pp3c1_33620' => 'ppa', 'Pp3c2_9380' => 'ppa', 'PRCOL_00001023' => 'pco', 'Prupe.3G216300' => 'ppe', 'Prupe.4G019500' => 'ppe', 'Prupe.6G092500' => 'ppe', 'Prupe.6G119200' => 'ppe', 'Psat0s1945g0080' => 'psa', 'Psat0s4167g0040' => 'psa', 'Psat1g185800' => 'psa', 'Psat4g006440' => 'psa', 'Psat4g006480' => 'psa', 'Psat4g168120' => 'psa', 'Psat5g255680' => 'psa', 'Psat5g261760' => 'psa', 'Psat7g222120' => 'psa', 'PSO063G7252' => 'pso', 'PSO170G4778' => 'pso', 'PSO210G2249' => 'pso', 'PSO339G2411' => 'pso', 'PSO339G2457' => 'pso', 'PSO339G2854' => 'pso', 'PSO339G4288' => 'pso', 'PSO339G4615' => 'pso', 'PSO384G2796' => 'pso', 'PSO384G2940' => 'pso', 'PSO384G4227' => 'pso', 'PSO478G1425' => 'pso', 'PSO541G3863' => 'pso', 'PSO675G0507' => 'pso', 'PSO782G0338' => 'pso', 'PSO832G0644' => 'pso', 'QL01p013664' => 'qlo', 'QL01p036598' => 'qlo', 'QL05p072984' => 'qlo', 'QL08p005768' => 'qlo', 'QL08p032743' => 'qlo', 'QL93p0073_0439' => 'qlo', 'QL93p0073_0444' => 'qlo', 'RcHm_v2.0_Chr5g0002851' => 'rch', 'RcHm_v2.0_Chr5g0055201' => 'rch', 'RcHm_v2.0_Chr5g0061191' => 'rch', 'RcHm_v2.0_Chr7g0203231' => 'rch', 'Rhsim01G0208100' => 'rsi', 'Rhsim01G0208200' => 'rsi', 'Rhsim02G0106500' => 'rsi', 'Rhsim03G0107900' => 'rsi', 'Rhsim06G0163400' => 'rsi', 'Rhsim13G0105200' => 'rsi', 'Sabra04G0006300' => 'sbr', 'Sabra04G0127000' => 'sbr', 'Sabra08G0148700' => 'sbr', 'Sabra09G0117400' => 'sbr', 'SalBow1G3326' => 'sbo', 'SalBow3G3228' => 'sbo', 'SalBow6G1634' => 'sbo', 'SalBow6G3603' => 'sbo', 'SalBow6G5266' => 'sbo', 'SalBow7G2265' => 'sbo', 'SalBow8G0850' => 'sbo', 'SalBow8G2592' => 'sbo', 'Sc05g0009240' => 'sci', 'Sc12g0002300' => 'sci', 'Sc21g0000100' => 'sci', 'Sc21g0004720' => 'sci', 'Sed0002949' => 'sed', 'Sed0004114' => 'sed', 'Sed0004306' => 'sed', 'Sed0006172' => 'sed', 'Sed0008413' => 'sed', 'Sed0013809' => 'sed', 'Sed0019556' => 'sed', 'SEGI_03570' => 'sgi', 'SEGI_07859' => 'sgi', 'SEGI_15042' => 'sgi', 'SEGI_16263' => 'sgi', 'SEGI_16552' => 'sgi', 'SEGI_24331' => 'sgi', 'SEGI_27316' => 'sgi', 'SEGI_29521' => 'sgi', 'SEGI_41342' => 'sgi', 'SGA_v2.0_scaffold27G11617' => 'sas', 'SGA_v2.0_scaffold316G48428' => 'sas', 'SGA_v2.0_scaffold49G18261' => 'sas', 'SGA_v2.0_scaffold7G03831' => 'sas', 'SGA_v2.0_scaffold93G28359' => 'sas', 'SHI02210' => 'shi', 'SHI06028' => 'shi', 'SHI06321' => 'shi', 'SMO111G0012' => 'smo', 'SMO228G0080' => 'smo', 'SMO356G0756' => 'smo', 'Solyc02g080620.3' => 'sly', 'Solyc06g074530.1' => 'sly', 'Solyc11g066890.1' => 'sly', 'Solyc11g072520.3' => 'sly', 'Sopen02g025330' => 'spe', 'Sopen06g031000' => 'spe', 'Sopen09g008240' => 'spe', 'Sopen09g025210' => 'spe', 'Sopen11g026600' => 'spe', 'Sopen11g030170' => 'spe', 'Sp1g10420' => 'spa', 'Sp3g06570' => 'spa', 'Sp4g10660' => 'spa', 'Sp5g16460' => 'spa', 'Sp6g22710' => 'spa', 'TAR365G0112' => 'tar', 'TAR369G0717' => 'tar', 'TAR374G0976' => 'tar', 'TAR623G1128' => 'tar', 'TAR626G1937' => 'tar', 'TAR627G0123' => 'tar', 'TAR628G0305' => 'tar', 'TAR636G1176' => 'tar', 'TAR636G2442' => 'tar', 'THA.LOC104800556' => 'tha', 'THA.LOC104809501' => 'tha', 'THA.LOC104815126' => 'tha', 'THA.LOC104815732' => 'tha', 'THA.LOC104823528' => 'tha', 'Thecc.02G365600' => 'tca', 'Thecc.06G222300' => 'tca', 'Thecc.09G261800' => 'tca', 'Thecc.09G291400' => 'tca', 'Thhalv10003028m.g' => 'esa', 'Thhalv10007886m.g' => 'esa', 'Thhalv10016085m.g' => 'esa', 'Thhalv10016681m.g' => 'esa', 'Thhalv10020951m.g' => 'esa', 'TPR.G15598' => 'tpr', 'TPR.G29305' => 'tpr', 'TPR.G32395' => 'tpr', 'TPR.G36998' => 'tpr', 'TPR.G4227' => 'tpr', 'TWI18G1433' => 'twi', 'TWI31G0755' => 'twi', 'TWI38G0912' => 'twi', 'TWI75G1097' => 'twi', 'TWI75G1619' => 'twi', 'TWI79G1336' => 'twi', 'unitig_0.g943' => 'ugi', 'unitig_0.g944' => 'ugi', 'unitig_22.g6646' => 'ugi', 'unitig_37.g12681' => 'ugi', 'unitig_8.g3290' => 'ugi', 'vmacro03278' => 'vma', 'vmacro12197' => 'vma', 'vmacro14478' => 'vma', 'vmacro15787' => 'vma', 'vmacro15789' => 'vma', 'vmacro15790' => 'vma', 'vmacro15806' => 'vma', 'vmacro22907' => 'vma', 'vmacro22908' => 'vma', 'vmacro22909' => 'vma', 'vmacro23108' => 'vma', 'VMungo0540G0540' => 'vmu', 'VMungo0540G2468' => 'vmu', 'VMungo1080G0390' => 'vmu', 'VMungo1080G1165' => 'vmu', 'VMungo1127G0170' => 'vmu', 'VMungo1127G2099' => 'vmu', 'VMungo1215G3013' => 'vmu', 'Zm00001eb013110' => 'zma', 'Zm00001eb084260' => 'zma', 'Zm00001eb096110' => 'zma', 'Zm00001eb217510' => 'zma', 'Zm00001eb322550' => 'zma', 'Zm00001eb390770' => 'zma', 'Zm00001eb397170' => 'zma', 'Zm00001eb404610' => 'zma', 'Zm00001eb421790' => 'zma' ) $gf_id = 'HOM05D000911' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000911' ) $data_identifier = 'HOM05D000911' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 16, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 5, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 6, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 8, 'nnu' => (int) 16, 'oeu' => (int) 8, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 5, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 16, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421790' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000911', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27780' => 'bna', 'A03p35380' => 'bna', 'A04p21160' => 'bna', 'A05p40570' => 'bna', 'A06p26900' => 'bna', 'A08p33230' => 'bna', 'A09p65960' => 'bna', 'A10p18290' => 'bna', 'Aa31LG1G12990' => 'aar', 'Aa31LG1G2980' => 'aar', 'Aa31LG4G14320' => 'aar', 'Aa31LG7G11800' => 'aar', 'Aa31sc36G50' => 'aar', 'Aa31sc36G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3721' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5459' => 'aag', 'Actinidia03028' => 'ach', 'Actinidia03753' => 'ach', 'Actinidia04187' => 'ach', 'Actinidia05509' => 'ach', 'Actinidia24180' => 'ach', 'Actinidia26906' => 'ach', 'Actinidia37097' => 'ach', 'Actinidia38249' => 'ach', 'Ah.01g003470' => 'amhyb', 'Ah.01g004580' => 'amhyb', 'Ah.01g014850' => 'amhyb', 'Ah.01g016830' => 'amhyb', 'Ah.14g088000' => 'amhyb', 'AL1G22980' => 'aly', 'AL3G18990' => 'aly', 'AL4G22440' => 'aly', 'AL4G33180' => 'aly', 'AL5G22920' => 'aly', 'AL6G33660' => 'aly', 'AL8G20720' => 'aly', 'Aqoxy1G00935' => 'aox', 'Aqoxy1G02094' => 'aox', 'Aqoxy2G01239' => 'aox', 'Aqoxy4G01870' => 'aox', 'Aqoxy7G00450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.36ZVTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71EM27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5D6C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH3WRE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3NCM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RIM768' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YB5YRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z36GDV' => 'arhy', 'AT1G08250' => 'ath', 'AT1G11790' => 'ath', 'AT2G27820' => 'ath', 'AT3G07630' => 'ath', 'AT3G44720' => 'ath', 'AT5G22630' => 'ath', 'ATR0693G304' => 'atr', 'ATR0794G109' => 'atr', 'ATR0820G120' => 'atr', 'ATR1159G064' => 'atr', 'Atru.chr10.2239' => 'acertr', 'Atru.chr3.3371' => 'acertr', 'Atru.chr6.3202' => 'acertr', 'AUR62006499' => 'cqu', 'AUR62012718' => 'cqu', 'AUR62021938' => 'cqu', 'AUR62023932' => 'cqu', 'AUR62025034' => 'cqu', 'AUR62025035' => 'cqu', 'AUR62038307' => 'cqu', 'AUR62043466' => 'cqu', 'BcaB02g10748' => 'bca', 'BcaB03g13231' => 'bca', 'BcaB03g14689' => 'bca', 'BcaB05g22716' => 'bca', 'BcaB06g28172' => 'bca', 'BcaB08g36413' => 'bca', 'BcaC01g02186' => 'bca', 'BcaC01g04272' => 'bca', 'BcaC02g08080' => 'bca', 'BcaC02g08227' => 'bca', 'BcaC03g13901' => 'bca', 'BcaC04g19593' => 'bca', 'BcaC04g20874' => 'bca', 'BcaC05g29557' => 'bca', 'BcaC06g35505' => 'bca', 'BcaC07g41954' => 'bca', 'BcaC07g41955' => 'bca', 'BcaC07g41956' => 'bca', 'BcaC07g42519' => 'bca', 'BcaC07g42520' => 'bca', 'BcaC07g42523' => 'bca', 'BcaC07g42524' => 'bca', 'BcaC07g42525' => 'bca', 'BcaC08g47480' => 'bca', 'BcaC08g47481' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00530' => 'bna', 'BolC2t07178H' => 'bol', 'BolC3t16567H' => 'bol', 'BolC4t27234H' => 'bol', 'BolC5t29728H' => 'bol', 'BolC5t34622H' => 'bol', 'BolC6t40321H' => 'bol', 'BolC7t42028H' => 'bol', 'BolC8t49125H' => 'bol', 'BolC8t52538H' => 'bol', 'BolC8t52539H' => 'bol', 'BolC9t56681H' => 'bol', 'BolC9t58266H' => 'bol', 'BolSC21t60294H' => 'bol', 'BraA02t05670Z' => 'bra', 'BraA03t12716Z' => 'bra', 'BraA04t17685Z' => 'bra', 'BraA05t22788Z' => 'bra', 'BraA06t24032Z' => 'bra', 'BraA06t25625Z' => 'bra', 'BraA07t27930Z' => 'bra', 'BraA08t35242Z' => 'bra', 'BraA09t38609Z' => 'bra', 'BraA10t43905Z' => 'bra', 'C02p11060' => 'bna', 'C03p42990' => 'bna', 'C03p67310' => 'bna', 'C04p56990' => 'bna', 'C04p58660' => 'bna', 'C05p09890' => 'bna', 'C05p59680' => 'bna', 'C06p19830' => 'bna', 'C06p53040' => 'bna', 'C07p15230' => 'bna', 'C08p50070' => 'bna', 'C08p50090' => 'bna', 'C09p38330' => 'bna', 'C09p53940' => 'bna', 'CAN.G1014.1' => 'can', 'CAN.G644.30' => 'can', 'CAN.G84.47' => 'can', 'CAN.G919.8' => 'can', 'CANSAT54G0113' => 'cansat', 'CANSAT54G1286' => 'cansat', 'CANSAT64G1020' => 'cansat', 'CARHR008080' => 'chi', 'CARHR008090' => 'chi', 'CARHR012130' => 'chi', 'CARHR038390' => 'chi', 'CARHR082330' => 'chi', 'CARHR120520' => 'chi', 'CARHR151470' => 'chi', 'CARHR190950' => 'chi', 'Carub.0001s0760' => 'cru', 'Carub.0001s1146' => 'cru', 'Carub.0003s0721' => 'cru', 'Carub.0004s0858' => 'cru', 'Carub.0005s1040' => 'cru', 'Carub.0006s2035' => 'cru', 'Carub.0015s0005' => 'cru', 'Ca_01607_v3' => 'car', 'Ca_01677_v3' => 'car', 'Ca_06087_v3' => 'car', 'Ca_19238_v3' => 'car', 'Ca_19373_v3' => 'car', 'Ca_21079_v3' => 'car', 'CBR_g54016' => 'cbr', 'CBR_g54018' => 'cbr', 'CBR_g54020' => 'cbr', 'Cc01_g09780' => 'ccan', 'Cc01_g11680' => 'ccan', 'Cc02_g15610' => 'ccan', 'Cc05_g04350' => 'ccan', 'Cc09_g01580' => 'ccan', 'CDE01G0795' => 'cde', 'CDE02G2024' => 'cde', 'CDE02G2260' => 'cde', 'CDE02G4561' => 'cde', 'CDE05G2733' => 'cde', 'CDE05G3422' => 'cde', 'CDE06G2003' => 'cde', 'CDE08G0576' => 'cde', 'CDE09G0048' => 'cde', 'CDE11G0805' => 'cde', 'Cfa003644' => 'cfa', 'Cfa006290' => 'cfa', 'Cfa010080' => 'cfa', 'Cfa011376' => 'cfa', 'Cfa011576' => 'cfa', 'Cfa011577' => 'cfa', 'Cfa014389' => 'cfa', 'Ciclev10006044m.g' => 'ccl', 'Ciclev10006954m.g' => 'ccl', 'Ciclev10015131m.g' => 'ccl', 'Ciclev10015580m.g' => 'ccl', 'Ciclev10028359m.g' => 'ccl', 'Ciclev10028573m.g' => 'ccl', 'CiPaw.03G159300' => 'cil', 'CiPaw.04G115100' => 'cil', 'CiPaw.09G092800' => 'cil', 'CiPaw.10G071800' => 'cil', 'CiPaw.13G105800' => 'cil', 'CiPaw.13G141000' => 'cil', 'CiPaw.14G103400' => 'cil', 'ClCG01G012700' => 'cla', 'ClCG01G012720' => 'cla', 'ClCG01G021920' => 'cla', 'ClCG02G008870' => 'cla', 'ClCG02G020840' => 'cla', 'ClCG02G021930' => 'cla', 'COL.COLO4_19302' => 'col', 'COL.COLO4_25262' => 'col', 'COL.COLO4_31788' => 'col', 'Cpa.g.c34684' => 'cpa', 'Cpa.g.c36520.1' => 'cpa', 'Cpa.g.c45626' => 'cpa', 'Cpa.g.sc121.17' => 'cpa', 'Cpa.g.sc13.22' => 'cpa', 'Cpa.g.sc87.88' => 'cpa', 'Cre06.g261800' => 'cre', 'CsaV3_1G014500' => 'csa', 'CsaV3_1G014510' => 'csa', 'CsaV3_2G034880' => 'csa', 'CsaV3_6G014760' => 'csa', 'CsaV3_6G021500' => 'csa', 'CsaV3_6G048980' => 'csa', 'CSS0002511' => 'camsi', 'CSS0007556' => 'camsi', 'CSS0008532' => 'camsi', 'CSS0009709' => 'camsi', 'CSS0010486' => 'camsi', 'CSS0016768' => 'camsi', 'CSS0023512' => 'camsi', 'CSS0025341' => 'camsi', 'CSS0027999' => 'camsi', 'CSS0028944' => 'camsi', 'CSS0032292' => 'camsi', 'CSS0032464' => 'camsi', 'CSS0037153' => 'camsi', 'CSS0039256' => 'camsi', 'CSS0048392' => 'camsi', 'CSS0050458' => 'camsi', 'DCAR_004224' => 'dca', 'DCAR_006147' => 'dca', 'DCAR_006465' => 'dca', 'DCAR_008159' => 'dca', 'DCAR_012164' => 'dca', 'DCAR_019764' => 'dca', 'Dinv05418' => 'din', 'Dinv10839' => 'din', 'Dinv12521' => 'din', 'Dinv13900' => 'din', 'Dinv29426' => 'din', 'Duzib150G0263' => 'dzi', 'Duzib168G1178' => 'dzi', 'Duzib168G1924' => 'dzi', 'Duzib170G0299' => 'dzi', 'Duzib170G0813' => 'dzi', 'Duzib235G1128' => 'dzi', 'Duzib248G1060' => 'dzi', 'ECA232G1910' => 'eca', 'ECA233G4621' => 'eca', 'ECA238G1216' => 'eca', 'ECA238G1784' => 'eca', 'ECA248G1242' => 'eca', 'EL10Ac8g20071' => 'bvu', 'EL10Ac9g21086' => 'bvu', 'EL10Ac9g22407' => 'bvu', 'EL10Ac9g22412' => 'bvu', 'Eucgr.A01119' => 'egr', 'Eucgr.E04043' => 'egr', 'Eucgr.J00428' => 'egr', 'Eucgr.J00958' => 'egr', 'FAN11G3091' => 'fan', 'FAN11G3651' => 'fan', 'FAN16G2566' => 'fan', 'FAN21G3155' => 'fan', 'FAN21G3400' => 'fan', 'FAN21G3543' => 'fan', 'FAN25G0234' => 'fan', 'FAN25G1422' => 'fan', 'FAN25G3392' => 'fan', 'FvH4_3g01940' => 'fve', 'FvH4_3g29870' => 'fve', 'FvH4_3g33680' => 'fve', 'Glyma.09G004200' => 'gma', 'Glyma.11G151288' => 'gma', 'Glyma.11G189100' => 'gma', 'Glyma.12G072500' => 'gma', 'Glyma.12G085500' => 'gma', 'Glyma.12G181800' => 'gma', 'Glyma.12G193000' => 'gma', 'Glyma.13G309300' => 'gma', 'Glyma.13G319000' => 'gma', 'Glyma.17G012600' => 'gma', 'Gohir.A06G148600' => 'ghi', 'Gohir.A07G115800' => 'ghi', 'Gohir.A08G003600' => 'ghi', 'Gohir.A09G093300' => 'ghi', 'Gohir.A09G105400' => 'ghi', 'Gohir.A09G105500' => 'ghi', 'Gohir.D06G154600' => 'ghi', 'Gohir.D07G120200' => 'ghi', 'Gohir.D08G013900' => 'ghi', 'Gohir.D09G093100' => 'ghi', 'Gohir.D09G102200' => 'ghi', 'Gohir.D09G102300' => 'ghi', 'Gorai.001G129400' => 'gra', 'Gorai.004G008200' => 'gra', 'Gorai.006G109800' => 'gra', 'Gorai.006G119500' => 'gra', 'Gorai.006G121300' => 'gra', 'Gorai.010G180700' => 'gra', 'GSVIVG01012716001' => 'vvi', 'GSVIVG01025118001' => 'vvi', 'GSVIVG01030439001' => 'vvi', 'GSVIVG01031397001' => 'vvi', 'HanXRQChr01g0004201' => 'han', 'HanXRQChr02g0054941' => 'han', 'HanXRQChr05g0141811' => 'han', 'HanXRQChr07g0197751' => 'han', 'HanXRQChr11g0346691' => 'han', 'HanXRQChr13g0396971' => 'han', 'HanXRQChr14g0432951' => 'han', 'HanXRQChr14g0452001' => 'han', 'HanXRQChr15g0496681' => 'han', 'HanXRQChr17g0557491' => 'han', 'HanXRQChr17g0557501' => 'han', 'Haze_06809' => 'cav', 'Haze_12852' => 'cav', 'Haze_15850' => 'cav', 'Haze_23446' => 'cav', 'Haze_23942' => 'cav', 'Haze_23943' => 'cav', 'Hma1.2p1_0091F.1_g046450' => 'hma', 'Hma1.2p1_0128F.1_g059910' => 'hma', 'Hma1.2p1_0249F.1_g102260' => 'hma', 'Hma1.2p1_0453F.1_g156190' => 'hma', 'Hma1.2p1_0695F.1_g204380' => 'hma', 'Hma1.2p1_0749F.1_g212650' => 'hma', 'Hma1.2p1_2156F.1_g315420' => 'hma', 'Hma1.2p1_2686F.1_g326940' => 'hma', 'HPP92_006428' => 'vpl', 'HPP92_012069' => 'vpl', 'HPP92_014129' => 'vpl', 'HPP92_014133' => 'vpl', 'HPP92_017315' => 'vpl', 'HPP92_026445' => 'vpl', 'HPP92_026446' => 'vpl', 'Hund00774' => 'sun', 'Hund07682' => 'sun', 'Hund21413' => 'sun', 'Hund23462' => 'sun', 'Hund23463' => 'sun', 'Lalb_Chr03g0027911' => 'lal', 'Lalb_Chr13g0304271' => 'lal', 'Lalb_Chr19g0137471' => 'lal', 'Lalb_Chr22g0350651' => 'lal', 'Lalb_Chr24g0395151' => 'lal', 'Lj1A1231T40' => 'lonja', 'Lj1A221T48' => 'lonja', 'Lj1C924T12' => 'lonja', 'Lj2C993G6' => 'lonja', 'Lj3g0005790' => 'lja', 'Lj3g0015432' => 'lja', 'Lj3g0017722' => 'lja', 'Lj3g0018497' => 'lja', 'Lj4g0025071' => 'lja', 'Lsat_1_v5_gn_1_129680' => 'lsa', 'Lsat_1_v5_gn_2_25321' => 'lsa', 'Lsat_1_v5_gn_2_95461' => 'lsa', 'Lsat_1_v5_gn_4_159620' => 'lsa', 'Lsat_1_v5_gn_6_41301' => 'lsa', 'Lsat_1_v5_gn_6_74660' => 'lsa', 'Lsat_1_v5_gn_7_11520' => 'lsa', 'Lsat_1_v5_gn_9_67680' => 'lsa', 'Manes.04G008300' => 'mes', 'Manes.04G008400' => 'mes', 'Manes.04G026500' => 'mes', 'Manes.10G135300' => 'mes', 'Manes.11G157300' => 'mes', 'Manes.12G074000' => 'mes', 'Manes.16G006200' => 'mes', 'Manes.17G026400' => 'mes', 'Mapoly0024s0086' => 'mpo', 'Mapoly0024s0087' => 'mpo', 'Mapoly0071s0057' => 'mpo', 'Mapoly0204s0012' => 'mpo', 'MBI04_g37681_MAGBIO' => 'mbi', 'MBI05_g17779_MAGBIO' => 'mbi', 'MBI12_g31184_MAGBIO' => 'mbi', 'MBI17_g11083_MAGBIO' => 'mbi', 'MBI18_g03883_MAGBIO' => 'mbi', 'MBI18_g28940_MAGBIO' => 'mbi', 'MCO01G690' => 'mco', 'MD03G1109900' => 'mdo', 'MD03G1134800' => 'mdo', 'MD05G1348000' => 'mdo', 'MD10G1322400' => 'mdo', 'MD11G1123300' => 'mdo', 'MD11G1157600' => 'mdo', 'Medtr2g084875' => 'mtr', 'Medtr2g088130' => 'mtr', 'Medtr4g055310' => 'mtr', 'Medtr4g061070' => 'mtr', 'Medtr4g132250' => 'mtr', 'MELO3C004795.2' => 'cme', 'MELO3C004797.2' => 'cme', 'MELO3C007396.2' => 'cme', 'MELO3C019277.2' => 'cme', 'MELO3C021449.2' => 'cme', 'MELO3C025736.2' => 'cme', 'Migut.D02175' => 'egut', 'Migut.H01573' => 'egut', 'Migut.M01327' => 'egut', 'Migut.N02513' => 'egut', 'MSTRG.14638' => 'ama', 'MSTRG.18632' => 'ama', 'MSTRG.7203' => 'ama', 'Nitab4.5_0000533g0140' => 'nta', 'Nitab4.5_0000888g0150' => 'nta', 'Nitab4.5_0001453g0040' => 'nta', 'Nitab4.5_0002827g0090' => 'nta', 'Nitab4.5_0003082g0040' => 'nta', 'Nitab4.5_0007799g0040' => 'nta', 'Nitab4.5_0008983g0010' => 'nta', 'Nitab4.5_0009017g0020' => 'nta', 'Nn1g02132' => 'nnu', 'Nn1g03492' => 'nnu', 'Nn1g03493' => 'nnu', 'Nn1g03494' => 'nnu', 'Nn1g07164' => 'nnu', 'Nn1g07291' => 'nnu', 'Nn2g10655' => 'nnu', 'Nn2g11652' => 'nnu', 'Nn2g14008' => 'nnu', 'Nn3g17476' => 'nnu', 'Nn3g17477' => 'nnu', 'Nn4g22370' => 'nnu', 'Nn4g25255' => 'nnu', 'Nn5g27755' => 'nnu', 'Nn6g34260' => 'nnu', 'Nn6g35041' => 'nnu', 'Oeu005924.1' => 'oeu', 'Oeu008383.1' => 'oeu', 'Oeu014928.1' => 'oeu', 'Oeu019889.1' => 'oeu', 'Oeu022271.1' => 'oeu', 'Oeu025271.1' => 'oeu', 'Oeu036302.1' => 'oeu', 'Oeu044100.1' => 'oeu', 'Os01g0528300' => 'osa', 'Os03g0286200' => 'osa', 'Os04g0406600' => 'osa', 'Os07g0512000' => 'osa', 'Os07g0694600' => 'osa', 'Os08g0411000' => 'osa', 'Os09g0565700' => 'osa', 'Os09g0566050' => 'osa', 'Os10g0523700' => 'osa', 'Peaxi162Scf00002g00514' => 'pax', 'Peaxi162Scf00047g01817' => 'pax', 'Peaxi162Scf00114g00001' => 'pax', 'Peaxi162Scf00147g00613' => 'pax', 'Peaxi162Scf00389g00425' => 'pax', 'PGR042G1139' => 'pgr', 'PGR042G3273' => 'pgr', 'PGR102G2180' => 'pgr', 'PGR119G0234' => 'pgr', 'PGR119G0668' => 'pgr', 'PGSC0003DMG400007122' => 'stu', 'PGSC0003DMG400016478' => 'stu', 'PGSC0003DMG400025374' => 'stu', 'PGSC0003DMG400026536' => 'stu', 'Phvul.003G079600' => 'pvu', 'Phvul.005G115600' => 'pvu', 'Phvul.005G127100' => 'pvu', 'Phvul.006G149500' => 'pvu', 'Phvul.006G149600' => 'pvu', 'Phvul.011G071800' => 'pvu', 'Phvul.011G090400' => 'pvu', 'Potri.004G013400' => 'ptr', 'Potri.004G188100' => 'ptr', 'Potri.008G195500' => 'ptr', 'Potri.009G148800' => 'ptr', 'Potri.011G004700' => 'ptr', 'Pp3c17_22810' => 'ppa', 'Pp3c18_4480' => 'ppa', 'Pp3c19_13030' => 'ppa', 'Pp3c1_33620' => 'ppa', 'Pp3c2_9380' => 'ppa', 'PRCOL_00001023' => 'pco', 'Prupe.3G216300' => 'ppe', 'Prupe.4G019500' => 'ppe', 'Prupe.6G092500' => 'ppe', 'Prupe.6G119200' => 'ppe', 'Psat0s1945g0080' => 'psa', 'Psat0s4167g0040' => 'psa', 'Psat1g185800' => 'psa', 'Psat4g006440' => 'psa', 'Psat4g006480' => 'psa', 'Psat4g168120' => 'psa', 'Psat5g255680' => 'psa', 'Psat5g261760' => 'psa', 'Psat7g222120' => 'psa', 'PSO063G7252' => 'pso', 'PSO170G4778' => 'pso', 'PSO210G2249' => 'pso', 'PSO339G2411' => 'pso', 'PSO339G2457' => 'pso', 'PSO339G2854' => 'pso', 'PSO339G4288' => 'pso', 'PSO339G4615' => 'pso', 'PSO384G2796' => 'pso', 'PSO384G2940' => 'pso', 'PSO384G4227' => 'pso', 'PSO478G1425' => 'pso', 'PSO541G3863' => 'pso', 'PSO675G0507' => 'pso', 'PSO782G0338' => 'pso', 'PSO832G0644' => 'pso', 'QL01p013664' => 'qlo', 'QL01p036598' => 'qlo', 'QL05p072984' => 'qlo', 'QL08p005768' => 'qlo', 'QL08p032743' => 'qlo', 'QL93p0073_0439' => 'qlo', 'QL93p0073_0444' => 'qlo', 'RcHm_v2.0_Chr5g0002851' => 'rch', 'RcHm_v2.0_Chr5g0055201' => 'rch', 'RcHm_v2.0_Chr5g0061191' => 'rch', 'RcHm_v2.0_Chr7g0203231' => 'rch', 'Rhsim01G0208100' => 'rsi', 'Rhsim01G0208200' => 'rsi', 'Rhsim02G0106500' => 'rsi', 'Rhsim03G0107900' => 'rsi', 'Rhsim06G0163400' => 'rsi', 'Rhsim13G0105200' => 'rsi', 'Sabra04G0006300' => 'sbr', 'Sabra04G0127000' => 'sbr', 'Sabra08G0148700' => 'sbr', 'Sabra09G0117400' => 'sbr', 'SalBow1G3326' => 'sbo', 'SalBow3G3228' => 'sbo', 'SalBow6G1634' => 'sbo', 'SalBow6G3603' => 'sbo', 'SalBow6G5266' => 'sbo', 'SalBow7G2265' => 'sbo', 'SalBow8G0850' => 'sbo', 'SalBow8G2592' => 'sbo', 'Sc05g0009240' => 'sci', 'Sc12g0002300' => 'sci', 'Sc21g0000100' => 'sci', 'Sc21g0004720' => 'sci', 'Sed0002949' => 'sed', 'Sed0004114' => 'sed', 'Sed0004306' => 'sed', 'Sed0006172' => 'sed', 'Sed0008413' => 'sed', 'Sed0013809' => 'sed', 'Sed0019556' => 'sed', 'SEGI_03570' => 'sgi', 'SEGI_07859' => 'sgi', 'SEGI_15042' => 'sgi', 'SEGI_16263' => 'sgi', 'SEGI_16552' => 'sgi', 'SEGI_24331' => 'sgi', 'SEGI_27316' => 'sgi', 'SEGI_29521' => 'sgi', 'SEGI_41342' => 'sgi', 'SGA_v2.0_scaffold27G11617' => 'sas', 'SGA_v2.0_scaffold316G48428' => 'sas', 'SGA_v2.0_scaffold49G18261' => 'sas', 'SGA_v2.0_scaffold7G03831' => 'sas', 'SGA_v2.0_scaffold93G28359' => 'sas', 'SHI02210' => 'shi', 'SHI06028' => 'shi', 'SHI06321' => 'shi', 'SMO111G0012' => 'smo', 'SMO228G0080' => 'smo', 'SMO356G0756' => 'smo', 'Solyc02g080620.3' => 'sly', 'Solyc06g074530.1' => 'sly', 'Solyc11g066890.1' => 'sly', 'Solyc11g072520.3' => 'sly', 'Sopen02g025330' => 'spe', 'Sopen06g031000' => 'spe', 'Sopen09g008240' => 'spe', 'Sopen09g025210' => 'spe', 'Sopen11g026600' => 'spe', 'Sopen11g030170' => 'spe', 'Sp1g10420' => 'spa', 'Sp3g06570' => 'spa', 'Sp4g10660' => 'spa', 'Sp5g16460' => 'spa', 'Sp6g22710' => 'spa', 'TAR365G0112' => 'tar', 'TAR369G0717' => 'tar', 'TAR374G0976' => 'tar', 'TAR623G1128' => 'tar', 'TAR626G1937' => 'tar', 'TAR627G0123' => 'tar', 'TAR628G0305' => 'tar', 'TAR636G1176' => 'tar', 'TAR636G2442' => 'tar', 'THA.LOC104800556' => 'tha', 'THA.LOC104809501' => 'tha', 'THA.LOC104815126' => 'tha', 'THA.LOC104815732' => 'tha', 'THA.LOC104823528' => 'tha', 'Thecc.02G365600' => 'tca', 'Thecc.06G222300' => 'tca', 'Thecc.09G261800' => 'tca', 'Thecc.09G291400' => 'tca', 'Thhalv10003028m.g' => 'esa', 'Thhalv10007886m.g' => 'esa', 'Thhalv10016085m.g' => 'esa', 'Thhalv10016681m.g' => 'esa', 'Thhalv10020951m.g' => 'esa', 'TPR.G15598' => 'tpr', 'TPR.G29305' => 'tpr', 'TPR.G32395' => 'tpr', 'TPR.G36998' => 'tpr', 'TPR.G4227' => 'tpr', 'TWI18G1433' => 'twi', 'TWI31G0755' => 'twi', 'TWI38G0912' => 'twi', 'TWI75G1097' => 'twi', 'TWI75G1619' => 'twi', 'TWI79G1336' => 'twi', 'unitig_0.g943' => 'ugi', 'unitig_0.g944' => 'ugi', 'unitig_22.g6646' => 'ugi', 'unitig_37.g12681' => 'ugi', 'unitig_8.g3290' => 'ugi', 'vmacro03278' => 'vma', 'vmacro12197' => 'vma', 'vmacro14478' => 'vma', 'vmacro15787' => 'vma', 'vmacro15789' => 'vma', 'vmacro15790' => 'vma', 'vmacro15806' => 'vma', 'vmacro22907' => 'vma', 'vmacro22908' => 'vma', 'vmacro22909' => 'vma', 'vmacro23108' => 'vma', 'VMungo0540G0540' => 'vmu', 'VMungo0540G2468' => 'vmu', 'VMungo1080G0390' => 'vmu', 'VMungo1080G1165' => 'vmu', 'VMungo1127G0170' => 'vmu', 'VMungo1127G2099' => 'vmu', 'VMungo1215G3013' => 'vmu', 'Zm00001eb013110' => 'zma', 'Zm00001eb084260' => 'zma', 'Zm00001eb096110' => 'zma', 'Zm00001eb217510' => 'zma', 'Zm00001eb322550' => 'zma', 'Zm00001eb390770' => 'zma', 'Zm00001eb397170' => 'zma', 'Zm00001eb404610' => 'zma', 'Zm00001eb421790' => 'zma' ), 'gf_id' => 'HOM05D000911', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000911' ), 'data_identifier' => 'HOM05D000911', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000911', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27780' => 'bna', 'A03p35380' => 'bna', 'A04p21160' => 'bna', 'A05p40570' => 'bna', 'A06p26900' => 'bna', 'A08p33230' => 'bna', 'A09p65960' => 'bna', 'A10p18290' => 'bna', 'Aa31LG1G12990' => 'aar', 'Aa31LG1G2980' => 'aar', 'Aa31LG4G14320' => 'aar', 'Aa31LG7G11800' => 'aar', 'Aa31sc36G50' => 'aar', 'Aa31sc36G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3721' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5459' => 'aag', 'Actinidia03028' => 'ach', 'Actinidia03753' => 'ach', 'Actinidia04187' => 'ach', 'Actinidia05509' => 'ach', 'Actinidia24180' => 'ach', 'Actinidia26906' => 'ach', 'Actinidia37097' => 'ach', 'Actinidia38249' => 'ach', 'Ah.01g003470' => 'amhyb', 'Ah.01g004580' => 'amhyb', 'Ah.01g014850' => 'amhyb', 'Ah.01g016830' => 'amhyb', 'Ah.14g088000' => 'amhyb', 'AL1G22980' => 'aly', 'AL3G18990' => 'aly', 'AL4G22440' => 'aly', 'AL4G33180' => 'aly', 'AL5G22920' => 'aly', 'AL6G33660' => 'aly', 'AL8G20720' => 'aly', 'Aqoxy1G00935' => 'aox', 'Aqoxy1G02094' => 'aox', 'Aqoxy2G01239' => 'aox', 'Aqoxy4G01870' => 'aox', 'Aqoxy7G00450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.36ZVTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71EM27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5D6C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH3WRE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3NCM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RIM768' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YB5YRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z36GDV' => 'arhy', 'AT1G08250' => 'ath', 'AT1G11790' => 'ath', 'AT2G27820' => 'ath', 'AT3G07630' => 'ath', 'AT3G44720' => 'ath', 'AT5G22630' => 'ath', 'ATR0693G304' => 'atr', 'ATR0794G109' => 'atr', 'ATR0820G120' => 'atr', 'ATR1159G064' => 'atr', 'Atru.chr10.2239' => 'acertr', 'Atru.chr3.3371' => 'acertr', 'Atru.chr6.3202' => 'acertr', 'AUR62006499' => 'cqu', 'AUR62012718' => 'cqu', 'AUR62021938' => 'cqu', 'AUR62023932' => 'cqu', 'AUR62025034' => 'cqu', 'AUR62025035' => 'cqu', 'AUR62038307' => 'cqu', 'AUR62043466' => 'cqu', 'BcaB02g10748' => 'bca', 'BcaB03g13231' => 'bca', 'BcaB03g14689' => 'bca', 'BcaB05g22716' => 'bca', 'BcaB06g28172' => 'bca', 'BcaB08g36413' => 'bca', 'BcaC01g02186' => 'bca', 'BcaC01g04272' => 'bca', 'BcaC02g08080' => 'bca', 'BcaC02g08227' => 'bca', 'BcaC03g13901' => 'bca', 'BcaC04g19593' => 'bca', 'BcaC04g20874' => 'bca', 'BcaC05g29557' => 'bca', 'BcaC06g35505' => 'bca', 'BcaC07g41954' => 'bca', 'BcaC07g41955' => 'bca', 'BcaC07g41956' => 'bca', 'BcaC07g42519' => 'bca', 'BcaC07g42520' => 'bca', 'BcaC07g42523' => 'bca', 'BcaC07g42524' => 'bca', 'BcaC07g42525' => 'bca', 'BcaC08g47480' => 'bca', 'BcaC08g47481' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00530' => 'bna', 'BolC2t07178H' => 'bol', 'BolC3t16567H' => 'bol', 'BolC4t27234H' => 'bol', 'BolC5t29728H' => 'bol', 'BolC5t34622H' => 'bol', 'BolC6t40321H' => 'bol', 'BolC7t42028H' => 'bol', 'BolC8t49125H' => 'bol', 'BolC8t52538H' => 'bol', 'BolC8t52539H' => 'bol', 'BolC9t56681H' => 'bol', 'BolC9t58266H' => 'bol', 'BolSC21t60294H' => 'bol', 'BraA02t05670Z' => 'bra', 'BraA03t12716Z' => 'bra', 'BraA04t17685Z' => 'bra', 'BraA05t22788Z' => 'bra', 'BraA06t24032Z' => 'bra', 'BraA06t25625Z' => 'bra', 'BraA07t27930Z' => 'bra', 'BraA08t35242Z' => 'bra', 'BraA09t38609Z' => 'bra', 'BraA10t43905Z' => 'bra', 'C02p11060' => 'bna', 'C03p42990' => 'bna', 'C03p67310' => 'bna', 'C04p56990' => 'bna', 'C04p58660' => 'bna', 'C05p09890' => 'bna', 'C05p59680' => 'bna', 'C06p19830' => 'bna', 'C06p53040' => 'bna', 'C07p15230' => 'bna', 'C08p50070' => 'bna', 'C08p50090' => 'bna', 'C09p38330' => 'bna', 'C09p53940' => 'bna', 'CAN.G1014.1' => 'can', 'CAN.G644.30' => 'can', 'CAN.G84.47' => 'can', 'CAN.G919.8' => 'can', 'CANSAT54G0113' => 'cansat', 'CANSAT54G1286' => 'cansat', 'CANSAT64G1020' => 'cansat', 'CARHR008080' => 'chi', 'CARHR008090' => 'chi', 'CARHR012130' => 'chi', 'CARHR038390' => 'chi', 'CARHR082330' => 'chi', 'CARHR120520' => 'chi', 'CARHR151470' => 'chi', 'CARHR190950' => 'chi', 'Carub.0001s0760' => 'cru', 'Carub.0001s1146' => 'cru', 'Carub.0003s0721' => 'cru', 'Carub.0004s0858' => 'cru', 'Carub.0005s1040' => 'cru', 'Carub.0006s2035' => 'cru', 'Carub.0015s0005' => 'cru', 'Ca_01607_v3' => 'car', 'Ca_01677_v3' => 'car', 'Ca_06087_v3' => 'car', 'Ca_19238_v3' => 'car', 'Ca_19373_v3' => 'car', 'Ca_21079_v3' => 'car', 'CBR_g54016' => 'cbr', 'CBR_g54018' => 'cbr', 'CBR_g54020' => 'cbr', 'Cc01_g09780' => 'ccan', 'Cc01_g11680' => 'ccan', 'Cc02_g15610' => 'ccan', 'Cc05_g04350' => 'ccan', 'Cc09_g01580' => 'ccan', 'CDE01G0795' => 'cde', 'CDE02G2024' => 'cde', 'CDE02G2260' => 'cde', 'CDE02G4561' => 'cde', 'CDE05G2733' => 'cde', 'CDE05G3422' => 'cde', 'CDE06G2003' => 'cde', 'CDE08G0576' => 'cde', 'CDE09G0048' => 'cde', 'CDE11G0805' => 'cde', 'Cfa003644' => 'cfa', 'Cfa006290' => 'cfa', 'Cfa010080' => 'cfa', 'Cfa011376' => 'cfa', 'Cfa011576' => 'cfa', 'Cfa011577' => 'cfa', 'Cfa014389' => 'cfa', 'Ciclev10006044m.g' => 'ccl', 'Ciclev10006954m.g' => 'ccl', 'Ciclev10015131m.g' => 'ccl', 'Ciclev10015580m.g' => 'ccl', 'Ciclev10028359m.g' => 'ccl', 'Ciclev10028573m.g' => 'ccl', 'CiPaw.03G159300' => 'cil', 'CiPaw.04G115100' => 'cil', 'CiPaw.09G092800' => 'cil', 'CiPaw.10G071800' => 'cil', 'CiPaw.13G105800' => 'cil', 'CiPaw.13G141000' => 'cil', 'CiPaw.14G103400' => 'cil', 'ClCG01G012700' => 'cla', 'ClCG01G012720' => 'cla', 'ClCG01G021920' => 'cla', 'ClCG02G008870' => 'cla', 'ClCG02G020840' => 'cla', 'ClCG02G021930' => 'cla', 'COL.COLO4_19302' => 'col', 'COL.COLO4_25262' => 'col', 'COL.COLO4_31788' => 'col', 'Cpa.g.c34684' => 'cpa', 'Cpa.g.c36520.1' => 'cpa', 'Cpa.g.c45626' => 'cpa', 'Cpa.g.sc121.17' => 'cpa', 'Cpa.g.sc13.22' => 'cpa', 'Cpa.g.sc87.88' => 'cpa', 'Cre06.g261800' => 'cre', 'CsaV3_1G014500' => 'csa', 'CsaV3_1G014510' => 'csa', 'CsaV3_2G034880' => 'csa', 'CsaV3_6G014760' => 'csa', 'CsaV3_6G021500' => 'csa', 'CsaV3_6G048980' => 'csa', 'CSS0002511' => 'camsi', 'CSS0007556' => 'camsi', 'CSS0008532' => 'camsi', 'CSS0009709' => 'camsi', 'CSS0010486' => 'camsi', 'CSS0016768' => 'camsi', 'CSS0023512' => 'camsi', 'CSS0025341' => 'camsi', 'CSS0027999' => 'camsi', 'CSS0028944' => 'camsi', 'CSS0032292' => 'camsi', 'CSS0032464' => 'camsi', 'CSS0037153' => 'camsi', 'CSS0039256' => 'camsi', 'CSS0048392' => 'camsi', 'CSS0050458' => 'camsi', 'DCAR_004224' => 'dca', 'DCAR_006147' => 'dca', 'DCAR_006465' => 'dca', 'DCAR_008159' => 'dca', 'DCAR_012164' => 'dca', 'DCAR_019764' => 'dca', 'Dinv05418' => 'din', 'Dinv10839' => 'din', 'Dinv12521' => 'din', 'Dinv13900' => 'din', 'Dinv29426' => 'din', 'Duzib150G0263' => 'dzi', 'Duzib168G1178' => 'dzi', 'Duzib168G1924' => 'dzi', 'Duzib170G0299' => 'dzi', 'Duzib170G0813' => 'dzi', 'Duzib235G1128' => 'dzi', 'Duzib248G1060' => 'dzi', 'ECA232G1910' => 'eca', 'ECA233G4621' => 'eca', 'ECA238G1216' => 'eca', 'ECA238G1784' => 'eca', 'ECA248G1242' => 'eca', 'EL10Ac8g20071' => 'bvu', 'EL10Ac9g21086' => 'bvu', 'EL10Ac9g22407' => 'bvu', 'EL10Ac9g22412' => 'bvu', 'Eucgr.A01119' => 'egr', 'Eucgr.E04043' => 'egr', 'Eucgr.J00428' => 'egr', 'Eucgr.J00958' => 'egr', 'FAN11G3091' => 'fan', 'FAN11G3651' => 'fan', 'FAN16G2566' => 'fan', 'FAN21G3155' => 'fan', 'FAN21G3400' => 'fan', 'FAN21G3543' => 'fan', 'FAN25G0234' => 'fan', 'FAN25G1422' => 'fan', 'FAN25G3392' => 'fan', 'FvH4_3g01940' => 'fve', 'FvH4_3g29870' => 'fve', 'FvH4_3g33680' => 'fve', 'Glyma.09G004200' => 'gma', 'Glyma.11G151288' => 'gma', 'Glyma.11G189100' => 'gma', 'Glyma.12G072500' => 'gma', 'Glyma.12G085500' => 'gma', 'Glyma.12G181800' => 'gma', 'Glyma.12G193000' => 'gma', 'Glyma.13G309300' => 'gma', 'Glyma.13G319000' => 'gma', 'Glyma.17G012600' => 'gma', 'Gohir.A06G148600' => 'ghi', 'Gohir.A07G115800' => 'ghi', 'Gohir.A08G003600' => 'ghi', 'Gohir.A09G093300' => 'ghi', 'Gohir.A09G105400' => 'ghi', 'Gohir.A09G105500' => 'ghi', 'Gohir.D06G154600' => 'ghi', 'Gohir.D07G120200' => 'ghi', 'Gohir.D08G013900' => 'ghi', 'Gohir.D09G093100' => 'ghi', 'Gohir.D09G102200' => 'ghi', 'Gohir.D09G102300' => 'ghi', 'Gorai.001G129400' => 'gra', 'Gorai.004G008200' => 'gra', 'Gorai.006G109800' => 'gra', 'Gorai.006G119500' => 'gra', 'Gorai.006G121300' => 'gra', 'Gorai.010G180700' => 'gra', 'GSVIVG01012716001' => 'vvi', 'GSVIVG01025118001' => 'vvi', 'GSVIVG01030439001' => 'vvi', 'GSVIVG01031397001' => 'vvi', 'HanXRQChr01g0004201' => 'han', 'HanXRQChr02g0054941' => 'han', 'HanXRQChr05g0141811' => 'han', 'HanXRQChr07g0197751' => 'han', 'HanXRQChr11g0346691' => 'han', 'HanXRQChr13g0396971' => 'han', 'HanXRQChr14g0432951' => 'han', 'HanXRQChr14g0452001' => 'han', 'HanXRQChr15g0496681' => 'han', 'HanXRQChr17g0557491' => 'han', 'HanXRQChr17g0557501' => 'han', 'Haze_06809' => 'cav', 'Haze_12852' => 'cav', 'Haze_15850' => 'cav', 'Haze_23446' => 'cav', 'Haze_23942' => 'cav', 'Haze_23943' => 'cav', 'Hma1.2p1_0091F.1_g046450' => 'hma', 'Hma1.2p1_0128F.1_g059910' => 'hma', 'Hma1.2p1_0249F.1_g102260' => 'hma', 'Hma1.2p1_0453F.1_g156190' => 'hma', 'Hma1.2p1_0695F.1_g204380' => 'hma', 'Hma1.2p1_0749F.1_g212650' => 'hma', 'Hma1.2p1_2156F.1_g315420' => 'hma', 'Hma1.2p1_2686F.1_g326940' => 'hma', 'HPP92_006428' => 'vpl', 'HPP92_012069' => 'vpl', 'HPP92_014129' => 'vpl', 'HPP92_014133' => 'vpl', 'HPP92_017315' => 'vpl', 'HPP92_026445' => 'vpl', 'HPP92_026446' => 'vpl', 'Hund00774' => 'sun', 'Hund07682' => 'sun', 'Hund21413' => 'sun', 'Hund23462' => 'sun', 'Hund23463' => 'sun', 'Lalb_Chr03g0027911' => 'lal', 'Lalb_Chr13g0304271' => 'lal', 'Lalb_Chr19g0137471' => 'lal', 'Lalb_Chr22g0350651' => 'lal', 'Lalb_Chr24g0395151' => 'lal', 'Lj1A1231T40' => 'lonja', 'Lj1A221T48' => 'lonja', 'Lj1C924T12' => 'lonja', 'Lj2C993G6' => 'lonja', 'Lj3g0005790' => 'lja', 'Lj3g0015432' => 'lja', 'Lj3g0017722' => 'lja', 'Lj3g0018497' => 'lja', 'Lj4g0025071' => 'lja', 'Lsat_1_v5_gn_1_129680' => 'lsa', 'Lsat_1_v5_gn_2_25321' => 'lsa', 'Lsat_1_v5_gn_2_95461' => 'lsa', 'Lsat_1_v5_gn_4_159620' => 'lsa', 'Lsat_1_v5_gn_6_41301' => 'lsa', 'Lsat_1_v5_gn_6_74660' => 'lsa', 'Lsat_1_v5_gn_7_11520' => 'lsa', 'Lsat_1_v5_gn_9_67680' => 'lsa', 'Manes.04G008300' => 'mes', 'Manes.04G008400' => 'mes', 'Manes.04G026500' => 'mes', 'Manes.10G135300' => 'mes', 'Manes.11G157300' => 'mes', 'Manes.12G074000' => 'mes', 'Manes.16G006200' => 'mes', 'Manes.17G026400' => 'mes', 'Mapoly0024s0086' => 'mpo', 'Mapoly0024s0087' => 'mpo', 'Mapoly0071s0057' => 'mpo', 'Mapoly0204s0012' => 'mpo', 'MBI04_g37681_MAGBIO' => 'mbi', 'MBI05_g17779_MAGBIO' => 'mbi', 'MBI12_g31184_MAGBIO' => 'mbi', 'MBI17_g11083_MAGBIO' => 'mbi', 'MBI18_g03883_MAGBIO' => 'mbi', 'MBI18_g28940_MAGBIO' => 'mbi', 'MCO01G690' => 'mco', 'MD03G1109900' => 'mdo', 'MD03G1134800' => 'mdo', 'MD05G1348000' => 'mdo', 'MD10G1322400' => 'mdo', 'MD11G1123300' => 'mdo', 'MD11G1157600' => 'mdo', 'Medtr2g084875' => 'mtr', 'Medtr2g088130' => 'mtr', 'Medtr4g055310' => 'mtr', 'Medtr4g061070' => 'mtr', 'Medtr4g132250' => 'mtr', 'MELO3C004795.2' => 'cme', 'MELO3C004797.2' => 'cme', 'MELO3C007396.2' => 'cme', 'MELO3C019277.2' => 'cme', 'MELO3C021449.2' => 'cme', 'MELO3C025736.2' => 'cme', 'Migut.D02175' => 'egut', 'Migut.H01573' => 'egut', 'Migut.M01327' => 'egut', 'Migut.N02513' => 'egut', 'MSTRG.14638' => 'ama', 'MSTRG.18632' => 'ama', 'MSTRG.7203' => 'ama', 'Nitab4.5_0000533g0140' => 'nta', 'Nitab4.5_0000888g0150' => 'nta', 'Nitab4.5_0001453g0040' => 'nta', 'Nitab4.5_0002827g0090' => 'nta', 'Nitab4.5_0003082g0040' => 'nta', 'Nitab4.5_0007799g0040' => 'nta', 'Nitab4.5_0008983g0010' => 'nta', 'Nitab4.5_0009017g0020' => 'nta', 'Nn1g02132' => 'nnu', 'Nn1g03492' => 'nnu', 'Nn1g03493' => 'nnu', 'Nn1g03494' => 'nnu', 'Nn1g07164' => 'nnu', 'Nn1g07291' => 'nnu', 'Nn2g10655' => 'nnu', 'Nn2g11652' => 'nnu', 'Nn2g14008' => 'nnu', 'Nn3g17476' => 'nnu', 'Nn3g17477' => 'nnu', 'Nn4g22370' => 'nnu', 'Nn4g25255' => 'nnu', 'Nn5g27755' => 'nnu', 'Nn6g34260' => 'nnu', 'Nn6g35041' => 'nnu', 'Oeu005924.1' => 'oeu', 'Oeu008383.1' => 'oeu', 'Oeu014928.1' => 'oeu', 'Oeu019889.1' => 'oeu', 'Oeu022271.1' => 'oeu', 'Oeu025271.1' => 'oeu', 'Oeu036302.1' => 'oeu', 'Oeu044100.1' => 'oeu', 'Os01g0528300' => 'osa', 'Os03g0286200' => 'osa', 'Os04g0406600' => 'osa', 'Os07g0512000' => 'osa', 'Os07g0694600' => 'osa', 'Os08g0411000' => 'osa', 'Os09g0565700' => 'osa', 'Os09g0566050' => 'osa', 'Os10g0523700' => 'osa', 'Peaxi162Scf00002g00514' => 'pax', 'Peaxi162Scf00047g01817' => 'pax', 'Peaxi162Scf00114g00001' => 'pax', 'Peaxi162Scf00147g00613' => 'pax', 'Peaxi162Scf00389g00425' => 'pax', 'PGR042G1139' => 'pgr', 'PGR042G3273' => 'pgr', 'PGR102G2180' => 'pgr', 'PGR119G0234' => 'pgr', 'PGR119G0668' => 'pgr', 'PGSC0003DMG400007122' => 'stu', 'PGSC0003DMG400016478' => 'stu', 'PGSC0003DMG400025374' => 'stu', 'PGSC0003DMG400026536' => 'stu', 'Phvul.003G079600' => 'pvu', 'Phvul.005G115600' => 'pvu', 'Phvul.005G127100' => 'pvu', 'Phvul.006G149500' => 'pvu', 'Phvul.006G149600' => 'pvu', 'Phvul.011G071800' => 'pvu', 'Phvul.011G090400' => 'pvu', 'Potri.004G013400' => 'ptr', 'Potri.004G188100' => 'ptr', 'Potri.008G195500' => 'ptr', 'Potri.009G148800' => 'ptr', 'Potri.011G004700' => 'ptr', 'Pp3c17_22810' => 'ppa', 'Pp3c18_4480' => 'ppa', 'Pp3c19_13030' => 'ppa', 'Pp3c1_33620' => 'ppa', 'Pp3c2_9380' => 'ppa', 'PRCOL_00001023' => 'pco', 'Prupe.3G216300' => 'ppe', 'Prupe.4G019500' => 'ppe', 'Prupe.6G092500' => 'ppe', 'Prupe.6G119200' => 'ppe', 'Psat0s1945g0080' => 'psa', 'Psat0s4167g0040' => 'psa', 'Psat1g185800' => 'psa', 'Psat4g006440' => 'psa', 'Psat4g006480' => 'psa', 'Psat4g168120' => 'psa', 'Psat5g255680' => 'psa', 'Psat5g261760' => 'psa', 'Psat7g222120' => 'psa', 'PSO063G7252' => 'pso', 'PSO170G4778' => 'pso', 'PSO210G2249' => 'pso', 'PSO339G2411' => 'pso', 'PSO339G2457' => 'pso', 'PSO339G2854' => 'pso', 'PSO339G4288' => 'pso', 'PSO339G4615' => 'pso', 'PSO384G2796' => 'pso', 'PSO384G2940' => 'pso', 'PSO384G4227' => 'pso', 'PSO478G1425' => 'pso', 'PSO541G3863' => 'pso', 'PSO675G0507' => 'pso', 'PSO782G0338' => 'pso', 'PSO832G0644' => 'pso', 'QL01p013664' => 'qlo', 'QL01p036598' => 'qlo', 'QL05p072984' => 'qlo', 'QL08p005768' => 'qlo', 'QL08p032743' => 'qlo', 'QL93p0073_0439' => 'qlo', 'QL93p0073_0444' => 'qlo', 'RcHm_v2.0_Chr5g0002851' => 'rch', 'RcHm_v2.0_Chr5g0055201' => 'rch', 'RcHm_v2.0_Chr5g0061191' => 'rch', 'RcHm_v2.0_Chr7g0203231' => 'rch', 'Rhsim01G0208100' => 'rsi', 'Rhsim01G0208200' => 'rsi', 'Rhsim02G0106500' => 'rsi', 'Rhsim03G0107900' => 'rsi', 'Rhsim06G0163400' => 'rsi', 'Rhsim13G0105200' => 'rsi', 'Sabra04G0006300' => 'sbr', 'Sabra04G0127000' => 'sbr', 'Sabra08G0148700' => 'sbr', 'Sabra09G0117400' => 'sbr', 'SalBow1G3326' => 'sbo', 'SalBow3G3228' => 'sbo', 'SalBow6G1634' => 'sbo', 'SalBow6G3603' => 'sbo', 'SalBow6G5266' => 'sbo', 'SalBow7G2265' => 'sbo', 'SalBow8G0850' => 'sbo', 'SalBow8G2592' => 'sbo', 'Sc05g0009240' => 'sci', 'Sc12g0002300' => 'sci', 'Sc21g0000100' => 'sci', 'Sc21g0004720' => 'sci', 'Sed0002949' => 'sed', 'Sed0004114' => 'sed', 'Sed0004306' => 'sed', 'Sed0006172' => 'sed', 'Sed0008413' => 'sed', 'Sed0013809' => 'sed', 'Sed0019556' => 'sed', 'SEGI_03570' => 'sgi', 'SEGI_07859' => 'sgi', 'SEGI_15042' => 'sgi', 'SEGI_16263' => 'sgi', 'SEGI_16552' => 'sgi', 'SEGI_24331' => 'sgi', 'SEGI_27316' => 'sgi', 'SEGI_29521' => 'sgi', 'SEGI_41342' => 'sgi', 'SGA_v2.0_scaffold27G11617' => 'sas', 'SGA_v2.0_scaffold316G48428' => 'sas', 'SGA_v2.0_scaffold49G18261' => 'sas', 'SGA_v2.0_scaffold7G03831' => 'sas', 'SGA_v2.0_scaffold93G28359' => 'sas', 'SHI02210' => 'shi', 'SHI06028' => 'shi', 'SHI06321' => 'shi', 'SMO111G0012' => 'smo', 'SMO228G0080' => 'smo', 'SMO356G0756' => 'smo', 'Solyc02g080620.3' => 'sly', 'Solyc06g074530.1' => 'sly', 'Solyc11g066890.1' => 'sly', 'Solyc11g072520.3' => 'sly', 'Sopen02g025330' => 'spe', 'Sopen06g031000' => 'spe', 'Sopen09g008240' => 'spe', 'Sopen09g025210' => 'spe', 'Sopen11g026600' => 'spe', 'Sopen11g030170' => 'spe', 'Sp1g10420' => 'spa', 'Sp3g06570' => 'spa', 'Sp4g10660' => 'spa', 'Sp5g16460' => 'spa', 'Sp6g22710' => 'spa', 'TAR365G0112' => 'tar', 'TAR369G0717' => 'tar', 'TAR374G0976' => 'tar', 'TAR623G1128' => 'tar', 'TAR626G1937' => 'tar', 'TAR627G0123' => 'tar', 'TAR628G0305' => 'tar', 'TAR636G1176' => 'tar', 'TAR636G2442' => 'tar', 'THA.LOC104800556' => 'tha', 'THA.LOC104809501' => 'tha', 'THA.LOC104815126' => 'tha', 'THA.LOC104815732' => 'tha', 'THA.LOC104823528' => 'tha', 'Thecc.02G365600' => 'tca', 'Thecc.06G222300' => 'tca', 'Thecc.09G261800' => 'tca', 'Thecc.09G291400' => 'tca', 'Thhalv10003028m.g' => 'esa', 'Thhalv10007886m.g' => 'esa', 'Thhalv10016085m.g' => 'esa', 'Thhalv10016681m.g' => 'esa', 'Thhalv10020951m.g' => 'esa', 'TPR.G15598' => 'tpr', 'TPR.G29305' => 'tpr', 'TPR.G32395' => 'tpr', 'TPR.G36998' => 'tpr', 'TPR.G4227' => 'tpr', 'TWI18G1433' => 'twi', 'TWI31G0755' => 'twi', 'TWI38G0912' => 'twi', 'TWI75G1097' => 'twi', 'TWI75G1619' => 'twi', 'TWI79G1336' => 'twi', 'unitig_0.g943' => 'ugi', 'unitig_0.g944' => 'ugi', 'unitig_22.g6646' => 'ugi', 'unitig_37.g12681' => 'ugi', 'unitig_8.g3290' => 'ugi', 'vmacro03278' => 'vma', 'vmacro12197' => 'vma', 'vmacro14478' => 'vma', 'vmacro15787' => 'vma', 'vmacro15789' => 'vma', 'vmacro15790' => 'vma', 'vmacro15806' => 'vma', 'vmacro22907' => 'vma', 'vmacro22908' => 'vma', 'vmacro22909' => 'vma', 'vmacro23108' => 'vma', 'VMungo0540G0540' => 'vmu', 'VMungo0540G2468' => 'vmu', 'VMungo1080G0390' => 'vmu', 'VMungo1080G1165' => 'vmu', 'VMungo1127G0170' => 'vmu', 'VMungo1127G2099' => 'vmu', 'VMungo1215G3013' => 'vmu', 'Zm00001eb013110' => 'zma', 'Zm00001eb084260' => 'zma', 'Zm00001eb096110' => 'zma', 'Zm00001eb217510' => 'zma', 'Zm00001eb322550' => 'zma', 'Zm00001eb390770' => 'zma', 'Zm00001eb397170' => 'zma', 'Zm00001eb404610' => 'zma', 'Zm00001eb421790' => 'zma' ) $gf_id = 'HOM05D000911' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000911' ) $data_identifier = 'HOM05D000911' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 16, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 5, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 6, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 8, 'nnu' => (int) 16, 'oeu' => (int) 8, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 5, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 16, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421790' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000911', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27780' => 'bna', 'A03p35380' => 'bna', 'A04p21160' => 'bna', 'A05p40570' => 'bna', 'A06p26900' => 'bna', 'A08p33230' => 'bna', 'A09p65960' => 'bna', 'A10p18290' => 'bna', 'Aa31LG1G12990' => 'aar', 'Aa31LG1G2980' => 'aar', 'Aa31LG4G14320' => 'aar', 'Aa31LG7G11800' => 'aar', 'Aa31sc36G50' => 'aar', 'Aa31sc36G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3721' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5459' => 'aag', 'Actinidia03028' => 'ach', 'Actinidia03753' => 'ach', 'Actinidia04187' => 'ach', 'Actinidia05509' => 'ach', 'Actinidia24180' => 'ach', 'Actinidia26906' => 'ach', 'Actinidia37097' => 'ach', 'Actinidia38249' => 'ach', 'Ah.01g003470' => 'amhyb', 'Ah.01g004580' => 'amhyb', 'Ah.01g014850' => 'amhyb', 'Ah.01g016830' => 'amhyb', 'Ah.14g088000' => 'amhyb', 'AL1G22980' => 'aly', 'AL3G18990' => 'aly', 'AL4G22440' => 'aly', 'AL4G33180' => 'aly', 'AL5G22920' => 'aly', 'AL6G33660' => 'aly', 'AL8G20720' => 'aly', 'Aqoxy1G00935' => 'aox', 'Aqoxy1G02094' => 'aox', 'Aqoxy2G01239' => 'aox', 'Aqoxy4G01870' => 'aox', 'Aqoxy7G00450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.36ZVTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71EM27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5D6C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH3WRE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3NCM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RIM768' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YB5YRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z36GDV' => 'arhy', 'AT1G08250' => 'ath', 'AT1G11790' => 'ath', 'AT2G27820' => 'ath', 'AT3G07630' => 'ath', 'AT3G44720' => 'ath', 'AT5G22630' => 'ath', 'ATR0693G304' => 'atr', 'ATR0794G109' => 'atr', 'ATR0820G120' => 'atr', 'ATR1159G064' => 'atr', 'Atru.chr10.2239' => 'acertr', 'Atru.chr3.3371' => 'acertr', 'Atru.chr6.3202' => 'acertr', 'AUR62006499' => 'cqu', 'AUR62012718' => 'cqu', 'AUR62021938' => 'cqu', 'AUR62023932' => 'cqu', 'AUR62025034' => 'cqu', 'AUR62025035' => 'cqu', 'AUR62038307' => 'cqu', 'AUR62043466' => 'cqu', 'BcaB02g10748' => 'bca', 'BcaB03g13231' => 'bca', 'BcaB03g14689' => 'bca', 'BcaB05g22716' => 'bca', 'BcaB06g28172' => 'bca', 'BcaB08g36413' => 'bca', 'BcaC01g02186' => 'bca', 'BcaC01g04272' => 'bca', 'BcaC02g08080' => 'bca', 'BcaC02g08227' => 'bca', 'BcaC03g13901' => 'bca', 'BcaC04g19593' => 'bca', 'BcaC04g20874' => 'bca', 'BcaC05g29557' => 'bca', 'BcaC06g35505' => 'bca', 'BcaC07g41954' => 'bca', 'BcaC07g41955' => 'bca', 'BcaC07g41956' => 'bca', 'BcaC07g42519' => 'bca', 'BcaC07g42520' => 'bca', 'BcaC07g42523' => 'bca', 'BcaC07g42524' => 'bca', 'BcaC07g42525' => 'bca', 'BcaC08g47480' => 'bca', 'BcaC08g47481' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00530' => 'bna', 'BolC2t07178H' => 'bol', 'BolC3t16567H' => 'bol', 'BolC4t27234H' => 'bol', 'BolC5t29728H' => 'bol', 'BolC5t34622H' => 'bol', 'BolC6t40321H' => 'bol', 'BolC7t42028H' => 'bol', 'BolC8t49125H' => 'bol', 'BolC8t52538H' => 'bol', 'BolC8t52539H' => 'bol', 'BolC9t56681H' => 'bol', 'BolC9t58266H' => 'bol', 'BolSC21t60294H' => 'bol', 'BraA02t05670Z' => 'bra', 'BraA03t12716Z' => 'bra', 'BraA04t17685Z' => 'bra', 'BraA05t22788Z' => 'bra', 'BraA06t24032Z' => 'bra', 'BraA06t25625Z' => 'bra', 'BraA07t27930Z' => 'bra', 'BraA08t35242Z' => 'bra', 'BraA09t38609Z' => 'bra', 'BraA10t43905Z' => 'bra', 'C02p11060' => 'bna', 'C03p42990' => 'bna', 'C03p67310' => 'bna', 'C04p56990' => 'bna', 'C04p58660' => 'bna', 'C05p09890' => 'bna', 'C05p59680' => 'bna', 'C06p19830' => 'bna', 'C06p53040' => 'bna', 'C07p15230' => 'bna', 'C08p50070' => 'bna', 'C08p50090' => 'bna', 'C09p38330' => 'bna', 'C09p53940' => 'bna', 'CAN.G1014.1' => 'can', 'CAN.G644.30' => 'can', 'CAN.G84.47' => 'can', 'CAN.G919.8' => 'can', 'CANSAT54G0113' => 'cansat', 'CANSAT54G1286' => 'cansat', 'CANSAT64G1020' => 'cansat', 'CARHR008080' => 'chi', 'CARHR008090' => 'chi', 'CARHR012130' => 'chi', 'CARHR038390' => 'chi', 'CARHR082330' => 'chi', 'CARHR120520' => 'chi', 'CARHR151470' => 'chi', 'CARHR190950' => 'chi', 'Carub.0001s0760' => 'cru', 'Carub.0001s1146' => 'cru', 'Carub.0003s0721' => 'cru', 'Carub.0004s0858' => 'cru', 'Carub.0005s1040' => 'cru', 'Carub.0006s2035' => 'cru', 'Carub.0015s0005' => 'cru', 'Ca_01607_v3' => 'car', 'Ca_01677_v3' => 'car', 'Ca_06087_v3' => 'car', 'Ca_19238_v3' => 'car', 'Ca_19373_v3' => 'car', 'Ca_21079_v3' => 'car', 'CBR_g54016' => 'cbr', 'CBR_g54018' => 'cbr', 'CBR_g54020' => 'cbr', 'Cc01_g09780' => 'ccan', 'Cc01_g11680' => 'ccan', 'Cc02_g15610' => 'ccan', 'Cc05_g04350' => 'ccan', 'Cc09_g01580' => 'ccan', 'CDE01G0795' => 'cde', 'CDE02G2024' => 'cde', 'CDE02G2260' => 'cde', 'CDE02G4561' => 'cde', 'CDE05G2733' => 'cde', 'CDE05G3422' => 'cde', 'CDE06G2003' => 'cde', 'CDE08G0576' => 'cde', 'CDE09G0048' => 'cde', 'CDE11G0805' => 'cde', 'Cfa003644' => 'cfa', 'Cfa006290' => 'cfa', 'Cfa010080' => 'cfa', 'Cfa011376' => 'cfa', 'Cfa011576' => 'cfa', 'Cfa011577' => 'cfa', 'Cfa014389' => 'cfa', 'Ciclev10006044m.g' => 'ccl', 'Ciclev10006954m.g' => 'ccl', 'Ciclev10015131m.g' => 'ccl', 'Ciclev10015580m.g' => 'ccl', 'Ciclev10028359m.g' => 'ccl', 'Ciclev10028573m.g' => 'ccl', 'CiPaw.03G159300' => 'cil', 'CiPaw.04G115100' => 'cil', 'CiPaw.09G092800' => 'cil', 'CiPaw.10G071800' => 'cil', 'CiPaw.13G105800' => 'cil', 'CiPaw.13G141000' => 'cil', 'CiPaw.14G103400' => 'cil', 'ClCG01G012700' => 'cla', 'ClCG01G012720' => 'cla', 'ClCG01G021920' => 'cla', 'ClCG02G008870' => 'cla', 'ClCG02G020840' => 'cla', 'ClCG02G021930' => 'cla', 'COL.COLO4_19302' => 'col', 'COL.COLO4_25262' => 'col', 'COL.COLO4_31788' => 'col', 'Cpa.g.c34684' => 'cpa', 'Cpa.g.c36520.1' => 'cpa', 'Cpa.g.c45626' => 'cpa', 'Cpa.g.sc121.17' => 'cpa', 'Cpa.g.sc13.22' => 'cpa', 'Cpa.g.sc87.88' => 'cpa', 'Cre06.g261800' => 'cre', 'CsaV3_1G014500' => 'csa', 'CsaV3_1G014510' => 'csa', 'CsaV3_2G034880' => 'csa', 'CsaV3_6G014760' => 'csa', 'CsaV3_6G021500' => 'csa', 'CsaV3_6G048980' => 'csa', 'CSS0002511' => 'camsi', 'CSS0007556' => 'camsi', 'CSS0008532' => 'camsi', 'CSS0009709' => 'camsi', 'CSS0010486' => 'camsi', 'CSS0016768' => 'camsi', 'CSS0023512' => 'camsi', 'CSS0025341' => 'camsi', 'CSS0027999' => 'camsi', 'CSS0028944' => 'camsi', 'CSS0032292' => 'camsi', 'CSS0032464' => 'camsi', 'CSS0037153' => 'camsi', 'CSS0039256' => 'camsi', 'CSS0048392' => 'camsi', 'CSS0050458' => 'camsi', 'DCAR_004224' => 'dca', 'DCAR_006147' => 'dca', 'DCAR_006465' => 'dca', 'DCAR_008159' => 'dca', 'DCAR_012164' => 'dca', 'DCAR_019764' => 'dca', 'Dinv05418' => 'din', 'Dinv10839' => 'din', 'Dinv12521' => 'din', 'Dinv13900' => 'din', 'Dinv29426' => 'din', 'Duzib150G0263' => 'dzi', 'Duzib168G1178' => 'dzi', 'Duzib168G1924' => 'dzi', 'Duzib170G0299' => 'dzi', 'Duzib170G0813' => 'dzi', 'Duzib235G1128' => 'dzi', 'Duzib248G1060' => 'dzi', 'ECA232G1910' => 'eca', 'ECA233G4621' => 'eca', 'ECA238G1216' => 'eca', 'ECA238G1784' => 'eca', 'ECA248G1242' => 'eca', 'EL10Ac8g20071' => 'bvu', 'EL10Ac9g21086' => 'bvu', 'EL10Ac9g22407' => 'bvu', 'EL10Ac9g22412' => 'bvu', 'Eucgr.A01119' => 'egr', 'Eucgr.E04043' => 'egr', 'Eucgr.J00428' => 'egr', 'Eucgr.J00958' => 'egr', 'FAN11G3091' => 'fan', 'FAN11G3651' => 'fan', 'FAN16G2566' => 'fan', 'FAN21G3155' => 'fan', 'FAN21G3400' => 'fan', 'FAN21G3543' => 'fan', 'FAN25G0234' => 'fan', 'FAN25G1422' => 'fan', 'FAN25G3392' => 'fan', 'FvH4_3g01940' => 'fve', 'FvH4_3g29870' => 'fve', 'FvH4_3g33680' => 'fve', 'Glyma.09G004200' => 'gma', 'Glyma.11G151288' => 'gma', 'Glyma.11G189100' => 'gma', 'Glyma.12G072500' => 'gma', 'Glyma.12G085500' => 'gma', 'Glyma.12G181800' => 'gma', 'Glyma.12G193000' => 'gma', 'Glyma.13G309300' => 'gma', 'Glyma.13G319000' => 'gma', 'Glyma.17G012600' => 'gma', 'Gohir.A06G148600' => 'ghi', 'Gohir.A07G115800' => 'ghi', 'Gohir.A08G003600' => 'ghi', 'Gohir.A09G093300' => 'ghi', 'Gohir.A09G105400' => 'ghi', 'Gohir.A09G105500' => 'ghi', 'Gohir.D06G154600' => 'ghi', 'Gohir.D07G120200' => 'ghi', 'Gohir.D08G013900' => 'ghi', 'Gohir.D09G093100' => 'ghi', 'Gohir.D09G102200' => 'ghi', 'Gohir.D09G102300' => 'ghi', 'Gorai.001G129400' => 'gra', 'Gorai.004G008200' => 'gra', 'Gorai.006G109800' => 'gra', 'Gorai.006G119500' => 'gra', 'Gorai.006G121300' => 'gra', 'Gorai.010G180700' => 'gra', 'GSVIVG01012716001' => 'vvi', 'GSVIVG01025118001' => 'vvi', 'GSVIVG01030439001' => 'vvi', 'GSVIVG01031397001' => 'vvi', 'HanXRQChr01g0004201' => 'han', 'HanXRQChr02g0054941' => 'han', 'HanXRQChr05g0141811' => 'han', 'HanXRQChr07g0197751' => 'han', 'HanXRQChr11g0346691' => 'han', 'HanXRQChr13g0396971' => 'han', 'HanXRQChr14g0432951' => 'han', 'HanXRQChr14g0452001' => 'han', 'HanXRQChr15g0496681' => 'han', 'HanXRQChr17g0557491' => 'han', 'HanXRQChr17g0557501' => 'han', 'Haze_06809' => 'cav', 'Haze_12852' => 'cav', 'Haze_15850' => 'cav', 'Haze_23446' => 'cav', 'Haze_23942' => 'cav', 'Haze_23943' => 'cav', 'Hma1.2p1_0091F.1_g046450' => 'hma', 'Hma1.2p1_0128F.1_g059910' => 'hma', 'Hma1.2p1_0249F.1_g102260' => 'hma', 'Hma1.2p1_0453F.1_g156190' => 'hma', 'Hma1.2p1_0695F.1_g204380' => 'hma', 'Hma1.2p1_0749F.1_g212650' => 'hma', 'Hma1.2p1_2156F.1_g315420' => 'hma', 'Hma1.2p1_2686F.1_g326940' => 'hma', 'HPP92_006428' => 'vpl', 'HPP92_012069' => 'vpl', 'HPP92_014129' => 'vpl', 'HPP92_014133' => 'vpl', 'HPP92_017315' => 'vpl', 'HPP92_026445' => 'vpl', 'HPP92_026446' => 'vpl', 'Hund00774' => 'sun', 'Hund07682' => 'sun', 'Hund21413' => 'sun', 'Hund23462' => 'sun', 'Hund23463' => 'sun', 'Lalb_Chr03g0027911' => 'lal', 'Lalb_Chr13g0304271' => 'lal', 'Lalb_Chr19g0137471' => 'lal', 'Lalb_Chr22g0350651' => 'lal', 'Lalb_Chr24g0395151' => 'lal', 'Lj1A1231T40' => 'lonja', 'Lj1A221T48' => 'lonja', 'Lj1C924T12' => 'lonja', 'Lj2C993G6' => 'lonja', 'Lj3g0005790' => 'lja', 'Lj3g0015432' => 'lja', 'Lj3g0017722' => 'lja', 'Lj3g0018497' => 'lja', 'Lj4g0025071' => 'lja', 'Lsat_1_v5_gn_1_129680' => 'lsa', 'Lsat_1_v5_gn_2_25321' => 'lsa', 'Lsat_1_v5_gn_2_95461' => 'lsa', 'Lsat_1_v5_gn_4_159620' => 'lsa', 'Lsat_1_v5_gn_6_41301' => 'lsa', 'Lsat_1_v5_gn_6_74660' => 'lsa', 'Lsat_1_v5_gn_7_11520' => 'lsa', 'Lsat_1_v5_gn_9_67680' => 'lsa', 'Manes.04G008300' => 'mes', 'Manes.04G008400' => 'mes', 'Manes.04G026500' => 'mes', 'Manes.10G135300' => 'mes', 'Manes.11G157300' => 'mes', 'Manes.12G074000' => 'mes', 'Manes.16G006200' => 'mes', 'Manes.17G026400' => 'mes', 'Mapoly0024s0086' => 'mpo', 'Mapoly0024s0087' => 'mpo', 'Mapoly0071s0057' => 'mpo', 'Mapoly0204s0012' => 'mpo', 'MBI04_g37681_MAGBIO' => 'mbi', 'MBI05_g17779_MAGBIO' => 'mbi', 'MBI12_g31184_MAGBIO' => 'mbi', 'MBI17_g11083_MAGBIO' => 'mbi', 'MBI18_g03883_MAGBIO' => 'mbi', 'MBI18_g28940_MAGBIO' => 'mbi', 'MCO01G690' => 'mco', 'MD03G1109900' => 'mdo', 'MD03G1134800' => 'mdo', 'MD05G1348000' => 'mdo', 'MD10G1322400' => 'mdo', 'MD11G1123300' => 'mdo', 'MD11G1157600' => 'mdo', 'Medtr2g084875' => 'mtr', 'Medtr2g088130' => 'mtr', 'Medtr4g055310' => 'mtr', 'Medtr4g061070' => 'mtr', 'Medtr4g132250' => 'mtr', 'MELO3C004795.2' => 'cme', 'MELO3C004797.2' => 'cme', 'MELO3C007396.2' => 'cme', 'MELO3C019277.2' => 'cme', 'MELO3C021449.2' => 'cme', 'MELO3C025736.2' => 'cme', 'Migut.D02175' => 'egut', 'Migut.H01573' => 'egut', 'Migut.M01327' => 'egut', 'Migut.N02513' => 'egut', 'MSTRG.14638' => 'ama', 'MSTRG.18632' => 'ama', 'MSTRG.7203' => 'ama', 'Nitab4.5_0000533g0140' => 'nta', 'Nitab4.5_0000888g0150' => 'nta', 'Nitab4.5_0001453g0040' => 'nta', 'Nitab4.5_0002827g0090' => 'nta', 'Nitab4.5_0003082g0040' => 'nta', 'Nitab4.5_0007799g0040' => 'nta', 'Nitab4.5_0008983g0010' => 'nta', 'Nitab4.5_0009017g0020' => 'nta', 'Nn1g02132' => 'nnu', 'Nn1g03492' => 'nnu', 'Nn1g03493' => 'nnu', 'Nn1g03494' => 'nnu', 'Nn1g07164' => 'nnu', 'Nn1g07291' => 'nnu', 'Nn2g10655' => 'nnu', 'Nn2g11652' => 'nnu', 'Nn2g14008' => 'nnu', 'Nn3g17476' => 'nnu', 'Nn3g17477' => 'nnu', 'Nn4g22370' => 'nnu', 'Nn4g25255' => 'nnu', 'Nn5g27755' => 'nnu', 'Nn6g34260' => 'nnu', 'Nn6g35041' => 'nnu', 'Oeu005924.1' => 'oeu', 'Oeu008383.1' => 'oeu', 'Oeu014928.1' => 'oeu', 'Oeu019889.1' => 'oeu', 'Oeu022271.1' => 'oeu', 'Oeu025271.1' => 'oeu', 'Oeu036302.1' => 'oeu', 'Oeu044100.1' => 'oeu', 'Os01g0528300' => 'osa', 'Os03g0286200' => 'osa', 'Os04g0406600' => 'osa', 'Os07g0512000' => 'osa', 'Os07g0694600' => 'osa', 'Os08g0411000' => 'osa', 'Os09g0565700' => 'osa', 'Os09g0566050' => 'osa', 'Os10g0523700' => 'osa', 'Peaxi162Scf00002g00514' => 'pax', 'Peaxi162Scf00047g01817' => 'pax', 'Peaxi162Scf00114g00001' => 'pax', 'Peaxi162Scf00147g00613' => 'pax', 'Peaxi162Scf00389g00425' => 'pax', 'PGR042G1139' => 'pgr', 'PGR042G3273' => 'pgr', 'PGR102G2180' => 'pgr', 'PGR119G0234' => 'pgr', 'PGR119G0668' => 'pgr', 'PGSC0003DMG400007122' => 'stu', 'PGSC0003DMG400016478' => 'stu', 'PGSC0003DMG400025374' => 'stu', 'PGSC0003DMG400026536' => 'stu', 'Phvul.003G079600' => 'pvu', 'Phvul.005G115600' => 'pvu', 'Phvul.005G127100' => 'pvu', 'Phvul.006G149500' => 'pvu', 'Phvul.006G149600' => 'pvu', 'Phvul.011G071800' => 'pvu', 'Phvul.011G090400' => 'pvu', 'Potri.004G013400' => 'ptr', 'Potri.004G188100' => 'ptr', 'Potri.008G195500' => 'ptr', 'Potri.009G148800' => 'ptr', 'Potri.011G004700' => 'ptr', 'Pp3c17_22810' => 'ppa', 'Pp3c18_4480' => 'ppa', 'Pp3c19_13030' => 'ppa', 'Pp3c1_33620' => 'ppa', 'Pp3c2_9380' => 'ppa', 'PRCOL_00001023' => 'pco', 'Prupe.3G216300' => 'ppe', 'Prupe.4G019500' => 'ppe', 'Prupe.6G092500' => 'ppe', 'Prupe.6G119200' => 'ppe', 'Psat0s1945g0080' => 'psa', 'Psat0s4167g0040' => 'psa', 'Psat1g185800' => 'psa', 'Psat4g006440' => 'psa', 'Psat4g006480' => 'psa', 'Psat4g168120' => 'psa', 'Psat5g255680' => 'psa', 'Psat5g261760' => 'psa', 'Psat7g222120' => 'psa', 'PSO063G7252' => 'pso', 'PSO170G4778' => 'pso', 'PSO210G2249' => 'pso', 'PSO339G2411' => 'pso', 'PSO339G2457' => 'pso', 'PSO339G2854' => 'pso', 'PSO339G4288' => 'pso', 'PSO339G4615' => 'pso', 'PSO384G2796' => 'pso', 'PSO384G2940' => 'pso', 'PSO384G4227' => 'pso', 'PSO478G1425' => 'pso', 'PSO541G3863' => 'pso', 'PSO675G0507' => 'pso', 'PSO782G0338' => 'pso', 'PSO832G0644' => 'pso', 'QL01p013664' => 'qlo', 'QL01p036598' => 'qlo', 'QL05p072984' => 'qlo', 'QL08p005768' => 'qlo', 'QL08p032743' => 'qlo', 'QL93p0073_0439' => 'qlo', 'QL93p0073_0444' => 'qlo', 'RcHm_v2.0_Chr5g0002851' => 'rch', 'RcHm_v2.0_Chr5g0055201' => 'rch', 'RcHm_v2.0_Chr5g0061191' => 'rch', 'RcHm_v2.0_Chr7g0203231' => 'rch', 'Rhsim01G0208100' => 'rsi', 'Rhsim01G0208200' => 'rsi', 'Rhsim02G0106500' => 'rsi', 'Rhsim03G0107900' => 'rsi', 'Rhsim06G0163400' => 'rsi', 'Rhsim13G0105200' => 'rsi', 'Sabra04G0006300' => 'sbr', 'Sabra04G0127000' => 'sbr', 'Sabra08G0148700' => 'sbr', 'Sabra09G0117400' => 'sbr', 'SalBow1G3326' => 'sbo', 'SalBow3G3228' => 'sbo', 'SalBow6G1634' => 'sbo', 'SalBow6G3603' => 'sbo', 'SalBow6G5266' => 'sbo', 'SalBow7G2265' => 'sbo', 'SalBow8G0850' => 'sbo', 'SalBow8G2592' => 'sbo', 'Sc05g0009240' => 'sci', 'Sc12g0002300' => 'sci', 'Sc21g0000100' => 'sci', 'Sc21g0004720' => 'sci', 'Sed0002949' => 'sed', 'Sed0004114' => 'sed', 'Sed0004306' => 'sed', 'Sed0006172' => 'sed', 'Sed0008413' => 'sed', 'Sed0013809' => 'sed', 'Sed0019556' => 'sed', 'SEGI_03570' => 'sgi', 'SEGI_07859' => 'sgi', 'SEGI_15042' => 'sgi', 'SEGI_16263' => 'sgi', 'SEGI_16552' => 'sgi', 'SEGI_24331' => 'sgi', 'SEGI_27316' => 'sgi', 'SEGI_29521' => 'sgi', 'SEGI_41342' => 'sgi', 'SGA_v2.0_scaffold27G11617' => 'sas', 'SGA_v2.0_scaffold316G48428' => 'sas', 'SGA_v2.0_scaffold49G18261' => 'sas', 'SGA_v2.0_scaffold7G03831' => 'sas', 'SGA_v2.0_scaffold93G28359' => 'sas', 'SHI02210' => 'shi', 'SHI06028' => 'shi', 'SHI06321' => 'shi', 'SMO111G0012' => 'smo', 'SMO228G0080' => 'smo', 'SMO356G0756' => 'smo', 'Solyc02g080620.3' => 'sly', 'Solyc06g074530.1' => 'sly', 'Solyc11g066890.1' => 'sly', 'Solyc11g072520.3' => 'sly', 'Sopen02g025330' => 'spe', 'Sopen06g031000' => 'spe', 'Sopen09g008240' => 'spe', 'Sopen09g025210' => 'spe', 'Sopen11g026600' => 'spe', 'Sopen11g030170' => 'spe', 'Sp1g10420' => 'spa', 'Sp3g06570' => 'spa', 'Sp4g10660' => 'spa', 'Sp5g16460' => 'spa', 'Sp6g22710' => 'spa', 'TAR365G0112' => 'tar', 'TAR369G0717' => 'tar', 'TAR374G0976' => 'tar', 'TAR623G1128' => 'tar', 'TAR626G1937' => 'tar', 'TAR627G0123' => 'tar', 'TAR628G0305' => 'tar', 'TAR636G1176' => 'tar', 'TAR636G2442' => 'tar', 'THA.LOC104800556' => 'tha', 'THA.LOC104809501' => 'tha', 'THA.LOC104815126' => 'tha', 'THA.LOC104815732' => 'tha', 'THA.LOC104823528' => 'tha', 'Thecc.02G365600' => 'tca', 'Thecc.06G222300' => 'tca', 'Thecc.09G261800' => 'tca', 'Thecc.09G291400' => 'tca', 'Thhalv10003028m.g' => 'esa', 'Thhalv10007886m.g' => 'esa', 'Thhalv10016085m.g' => 'esa', 'Thhalv10016681m.g' => 'esa', 'Thhalv10020951m.g' => 'esa', 'TPR.G15598' => 'tpr', 'TPR.G29305' => 'tpr', 'TPR.G32395' => 'tpr', 'TPR.G36998' => 'tpr', 'TPR.G4227' => 'tpr', 'TWI18G1433' => 'twi', 'TWI31G0755' => 'twi', 'TWI38G0912' => 'twi', 'TWI75G1097' => 'twi', 'TWI75G1619' => 'twi', 'TWI79G1336' => 'twi', 'unitig_0.g943' => 'ugi', 'unitig_0.g944' => 'ugi', 'unitig_22.g6646' => 'ugi', 'unitig_37.g12681' => 'ugi', 'unitig_8.g3290' => 'ugi', 'vmacro03278' => 'vma', 'vmacro12197' => 'vma', 'vmacro14478' => 'vma', 'vmacro15787' => 'vma', 'vmacro15789' => 'vma', 'vmacro15790' => 'vma', 'vmacro15806' => 'vma', 'vmacro22907' => 'vma', 'vmacro22908' => 'vma', 'vmacro22909' => 'vma', 'vmacro23108' => 'vma', 'VMungo0540G0540' => 'vmu', 'VMungo0540G2468' => 'vmu', 'VMungo1080G0390' => 'vmu', 'VMungo1080G1165' => 'vmu', 'VMungo1127G0170' => 'vmu', 'VMungo1127G2099' => 'vmu', 'VMungo1215G3013' => 'vmu', 'Zm00001eb013110' => 'zma', 'Zm00001eb084260' => 'zma', 'Zm00001eb096110' => 'zma', 'Zm00001eb217510' => 'zma', 'Zm00001eb322550' => 'zma', 'Zm00001eb390770' => 'zma', 'Zm00001eb397170' => 'zma', 'Zm00001eb404610' => 'zma', 'Zm00001eb421790' => 'zma' ), 'gf_id' => 'HOM05D000911', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000911' ), 'data_identifier' => 'HOM05D000911', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000911', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27780' => 'bna', 'A03p35380' => 'bna', 'A04p21160' => 'bna', 'A05p40570' => 'bna', 'A06p26900' => 'bna', 'A08p33230' => 'bna', 'A09p65960' => 'bna', 'A10p18290' => 'bna', 'Aa31LG1G12990' => 'aar', 'Aa31LG1G2980' => 'aar', 'Aa31LG4G14320' => 'aar', 'Aa31LG7G11800' => 'aar', 'Aa31sc36G50' => 'aar', 'Aa31sc36G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3721' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5459' => 'aag', 'Actinidia03028' => 'ach', 'Actinidia03753' => 'ach', 'Actinidia04187' => 'ach', 'Actinidia05509' => 'ach', 'Actinidia24180' => 'ach', 'Actinidia26906' => 'ach', 'Actinidia37097' => 'ach', 'Actinidia38249' => 'ach', 'Ah.01g003470' => 'amhyb', 'Ah.01g004580' => 'amhyb', 'Ah.01g014850' => 'amhyb', 'Ah.01g016830' => 'amhyb', 'Ah.14g088000' => 'amhyb', 'AL1G22980' => 'aly', 'AL3G18990' => 'aly', 'AL4G22440' => 'aly', 'AL4G33180' => 'aly', 'AL5G22920' => 'aly', 'AL6G33660' => 'aly', 'AL8G20720' => 'aly', 'Aqoxy1G00935' => 'aox', 'Aqoxy1G02094' => 'aox', 'Aqoxy2G01239' => 'aox', 'Aqoxy4G01870' => 'aox', 'Aqoxy7G00450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.36ZVTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71EM27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5D6C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH3WRE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3NCM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RIM768' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YB5YRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z36GDV' => 'arhy', 'AT1G08250' => 'ath', 'AT1G11790' => 'ath', 'AT2G27820' => 'ath', 'AT3G07630' => 'ath', 'AT3G44720' => 'ath', 'AT5G22630' => 'ath', 'ATR0693G304' => 'atr', 'ATR0794G109' => 'atr', 'ATR0820G120' => 'atr', 'ATR1159G064' => 'atr', 'Atru.chr10.2239' => 'acertr', 'Atru.chr3.3371' => 'acertr', 'Atru.chr6.3202' => 'acertr', 'AUR62006499' => 'cqu', 'AUR62012718' => 'cqu', 'AUR62021938' => 'cqu', 'AUR62023932' => 'cqu', 'AUR62025034' => 'cqu', 'AUR62025035' => 'cqu', 'AUR62038307' => 'cqu', 'AUR62043466' => 'cqu', 'BcaB02g10748' => 'bca', 'BcaB03g13231' => 'bca', 'BcaB03g14689' => 'bca', 'BcaB05g22716' => 'bca', 'BcaB06g28172' => 'bca', 'BcaB08g36413' => 'bca', 'BcaC01g02186' => 'bca', 'BcaC01g04272' => 'bca', 'BcaC02g08080' => 'bca', 'BcaC02g08227' => 'bca', 'BcaC03g13901' => 'bca', 'BcaC04g19593' => 'bca', 'BcaC04g20874' => 'bca', 'BcaC05g29557' => 'bca', 'BcaC06g35505' => 'bca', 'BcaC07g41954' => 'bca', 'BcaC07g41955' => 'bca', 'BcaC07g41956' => 'bca', 'BcaC07g42519' => 'bca', 'BcaC07g42520' => 'bca', 'BcaC07g42523' => 'bca', 'BcaC07g42524' => 'bca', 'BcaC07g42525' => 'bca', 'BcaC08g47480' => 'bca', 'BcaC08g47481' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00530' => 'bna', 'BolC2t07178H' => 'bol', 'BolC3t16567H' => 'bol', 'BolC4t27234H' => 'bol', 'BolC5t29728H' => 'bol', 'BolC5t34622H' => 'bol', 'BolC6t40321H' => 'bol', 'BolC7t42028H' => 'bol', 'BolC8t49125H' => 'bol', 'BolC8t52538H' => 'bol', 'BolC8t52539H' => 'bol', 'BolC9t56681H' => 'bol', 'BolC9t58266H' => 'bol', 'BolSC21t60294H' => 'bol', 'BraA02t05670Z' => 'bra', 'BraA03t12716Z' => 'bra', 'BraA04t17685Z' => 'bra', 'BraA05t22788Z' => 'bra', 'BraA06t24032Z' => 'bra', 'BraA06t25625Z' => 'bra', 'BraA07t27930Z' => 'bra', 'BraA08t35242Z' => 'bra', 'BraA09t38609Z' => 'bra', 'BraA10t43905Z' => 'bra', 'C02p11060' => 'bna', 'C03p42990' => 'bna', 'C03p67310' => 'bna', 'C04p56990' => 'bna', 'C04p58660' => 'bna', 'C05p09890' => 'bna', 'C05p59680' => 'bna', 'C06p19830' => 'bna', 'C06p53040' => 'bna', 'C07p15230' => 'bna', 'C08p50070' => 'bna', 'C08p50090' => 'bna', 'C09p38330' => 'bna', 'C09p53940' => 'bna', 'CAN.G1014.1' => 'can', 'CAN.G644.30' => 'can', 'CAN.G84.47' => 'can', 'CAN.G919.8' => 'can', 'CANSAT54G0113' => 'cansat', 'CANSAT54G1286' => 'cansat', 'CANSAT64G1020' => 'cansat', 'CARHR008080' => 'chi', 'CARHR008090' => 'chi', 'CARHR012130' => 'chi', 'CARHR038390' => 'chi', 'CARHR082330' => 'chi', 'CARHR120520' => 'chi', 'CARHR151470' => 'chi', 'CARHR190950' => 'chi', 'Carub.0001s0760' => 'cru', 'Carub.0001s1146' => 'cru', 'Carub.0003s0721' => 'cru', 'Carub.0004s0858' => 'cru', 'Carub.0005s1040' => 'cru', 'Carub.0006s2035' => 'cru', 'Carub.0015s0005' => 'cru', 'Ca_01607_v3' => 'car', 'Ca_01677_v3' => 'car', 'Ca_06087_v3' => 'car', 'Ca_19238_v3' => 'car', 'Ca_19373_v3' => 'car', 'Ca_21079_v3' => 'car', 'CBR_g54016' => 'cbr', 'CBR_g54018' => 'cbr', 'CBR_g54020' => 'cbr', 'Cc01_g09780' => 'ccan', 'Cc01_g11680' => 'ccan', 'Cc02_g15610' => 'ccan', 'Cc05_g04350' => 'ccan', 'Cc09_g01580' => 'ccan', 'CDE01G0795' => 'cde', 'CDE02G2024' => 'cde', 'CDE02G2260' => 'cde', 'CDE02G4561' => 'cde', 'CDE05G2733' => 'cde', 'CDE05G3422' => 'cde', 'CDE06G2003' => 'cde', 'CDE08G0576' => 'cde', 'CDE09G0048' => 'cde', 'CDE11G0805' => 'cde', 'Cfa003644' => 'cfa', 'Cfa006290' => 'cfa', 'Cfa010080' => 'cfa', 'Cfa011376' => 'cfa', 'Cfa011576' => 'cfa', 'Cfa011577' => 'cfa', 'Cfa014389' => 'cfa', 'Ciclev10006044m.g' => 'ccl', 'Ciclev10006954m.g' => 'ccl', 'Ciclev10015131m.g' => 'ccl', 'Ciclev10015580m.g' => 'ccl', 'Ciclev10028359m.g' => 'ccl', 'Ciclev10028573m.g' => 'ccl', 'CiPaw.03G159300' => 'cil', 'CiPaw.04G115100' => 'cil', 'CiPaw.09G092800' => 'cil', 'CiPaw.10G071800' => 'cil', 'CiPaw.13G105800' => 'cil', 'CiPaw.13G141000' => 'cil', 'CiPaw.14G103400' => 'cil', 'ClCG01G012700' => 'cla', 'ClCG01G012720' => 'cla', 'ClCG01G021920' => 'cla', 'ClCG02G008870' => 'cla', 'ClCG02G020840' => 'cla', 'ClCG02G021930' => 'cla', 'COL.COLO4_19302' => 'col', 'COL.COLO4_25262' => 'col', 'COL.COLO4_31788' => 'col', 'Cpa.g.c34684' => 'cpa', 'Cpa.g.c36520.1' => 'cpa', 'Cpa.g.c45626' => 'cpa', 'Cpa.g.sc121.17' => 'cpa', 'Cpa.g.sc13.22' => 'cpa', 'Cpa.g.sc87.88' => 'cpa', 'Cre06.g261800' => 'cre', 'CsaV3_1G014500' => 'csa', 'CsaV3_1G014510' => 'csa', 'CsaV3_2G034880' => 'csa', 'CsaV3_6G014760' => 'csa', 'CsaV3_6G021500' => 'csa', 'CsaV3_6G048980' => 'csa', 'CSS0002511' => 'camsi', 'CSS0007556' => 'camsi', 'CSS0008532' => 'camsi', 'CSS0009709' => 'camsi', 'CSS0010486' => 'camsi', 'CSS0016768' => 'camsi', 'CSS0023512' => 'camsi', 'CSS0025341' => 'camsi', 'CSS0027999' => 'camsi', 'CSS0028944' => 'camsi', 'CSS0032292' => 'camsi', 'CSS0032464' => 'camsi', 'CSS0037153' => 'camsi', 'CSS0039256' => 'camsi', 'CSS0048392' => 'camsi', 'CSS0050458' => 'camsi', 'DCAR_004224' => 'dca', 'DCAR_006147' => 'dca', 'DCAR_006465' => 'dca', 'DCAR_008159' => 'dca', 'DCAR_012164' => 'dca', 'DCAR_019764' => 'dca', 'Dinv05418' => 'din', 'Dinv10839' => 'din', 'Dinv12521' => 'din', 'Dinv13900' => 'din', 'Dinv29426' => 'din', 'Duzib150G0263' => 'dzi', 'Duzib168G1178' => 'dzi', 'Duzib168G1924' => 'dzi', 'Duzib170G0299' => 'dzi', 'Duzib170G0813' => 'dzi', 'Duzib235G1128' => 'dzi', 'Duzib248G1060' => 'dzi', 'ECA232G1910' => 'eca', 'ECA233G4621' => 'eca', 'ECA238G1216' => 'eca', 'ECA238G1784' => 'eca', 'ECA248G1242' => 'eca', 'EL10Ac8g20071' => 'bvu', 'EL10Ac9g21086' => 'bvu', 'EL10Ac9g22407' => 'bvu', 'EL10Ac9g22412' => 'bvu', 'Eucgr.A01119' => 'egr', 'Eucgr.E04043' => 'egr', 'Eucgr.J00428' => 'egr', 'Eucgr.J00958' => 'egr', 'FAN11G3091' => 'fan', 'FAN11G3651' => 'fan', 'FAN16G2566' => 'fan', 'FAN21G3155' => 'fan', 'FAN21G3400' => 'fan', 'FAN21G3543' => 'fan', 'FAN25G0234' => 'fan', 'FAN25G1422' => 'fan', 'FAN25G3392' => 'fan', 'FvH4_3g01940' => 'fve', 'FvH4_3g29870' => 'fve', 'FvH4_3g33680' => 'fve', 'Glyma.09G004200' => 'gma', 'Glyma.11G151288' => 'gma', 'Glyma.11G189100' => 'gma', 'Glyma.12G072500' => 'gma', 'Glyma.12G085500' => 'gma', 'Glyma.12G181800' => 'gma', 'Glyma.12G193000' => 'gma', 'Glyma.13G309300' => 'gma', 'Glyma.13G319000' => 'gma', 'Glyma.17G012600' => 'gma', 'Gohir.A06G148600' => 'ghi', 'Gohir.A07G115800' => 'ghi', 'Gohir.A08G003600' => 'ghi', 'Gohir.A09G093300' => 'ghi', 'Gohir.A09G105400' => 'ghi', 'Gohir.A09G105500' => 'ghi', 'Gohir.D06G154600' => 'ghi', 'Gohir.D07G120200' => 'ghi', 'Gohir.D08G013900' => 'ghi', 'Gohir.D09G093100' => 'ghi', 'Gohir.D09G102200' => 'ghi', 'Gohir.D09G102300' => 'ghi', 'Gorai.001G129400' => 'gra', 'Gorai.004G008200' => 'gra', 'Gorai.006G109800' => 'gra', 'Gorai.006G119500' => 'gra', 'Gorai.006G121300' => 'gra', 'Gorai.010G180700' => 'gra', 'GSVIVG01012716001' => 'vvi', 'GSVIVG01025118001' => 'vvi', 'GSVIVG01030439001' => 'vvi', 'GSVIVG01031397001' => 'vvi', 'HanXRQChr01g0004201' => 'han', 'HanXRQChr02g0054941' => 'han', 'HanXRQChr05g0141811' => 'han', 'HanXRQChr07g0197751' => 'han', 'HanXRQChr11g0346691' => 'han', 'HanXRQChr13g0396971' => 'han', 'HanXRQChr14g0432951' => 'han', 'HanXRQChr14g0452001' => 'han', 'HanXRQChr15g0496681' => 'han', 'HanXRQChr17g0557491' => 'han', 'HanXRQChr17g0557501' => 'han', 'Haze_06809' => 'cav', 'Haze_12852' => 'cav', 'Haze_15850' => 'cav', 'Haze_23446' => 'cav', 'Haze_23942' => 'cav', 'Haze_23943' => 'cav', 'Hma1.2p1_0091F.1_g046450' => 'hma', 'Hma1.2p1_0128F.1_g059910' => 'hma', 'Hma1.2p1_0249F.1_g102260' => 'hma', 'Hma1.2p1_0453F.1_g156190' => 'hma', 'Hma1.2p1_0695F.1_g204380' => 'hma', 'Hma1.2p1_0749F.1_g212650' => 'hma', 'Hma1.2p1_2156F.1_g315420' => 'hma', 'Hma1.2p1_2686F.1_g326940' => 'hma', 'HPP92_006428' => 'vpl', 'HPP92_012069' => 'vpl', 'HPP92_014129' => 'vpl', 'HPP92_014133' => 'vpl', 'HPP92_017315' => 'vpl', 'HPP92_026445' => 'vpl', 'HPP92_026446' => 'vpl', 'Hund00774' => 'sun', 'Hund07682' => 'sun', 'Hund21413' => 'sun', 'Hund23462' => 'sun', 'Hund23463' => 'sun', 'Lalb_Chr03g0027911' => 'lal', 'Lalb_Chr13g0304271' => 'lal', 'Lalb_Chr19g0137471' => 'lal', 'Lalb_Chr22g0350651' => 'lal', 'Lalb_Chr24g0395151' => 'lal', 'Lj1A1231T40' => 'lonja', 'Lj1A221T48' => 'lonja', 'Lj1C924T12' => 'lonja', 'Lj2C993G6' => 'lonja', 'Lj3g0005790' => 'lja', 'Lj3g0015432' => 'lja', 'Lj3g0017722' => 'lja', 'Lj3g0018497' => 'lja', 'Lj4g0025071' => 'lja', 'Lsat_1_v5_gn_1_129680' => 'lsa', 'Lsat_1_v5_gn_2_25321' => 'lsa', 'Lsat_1_v5_gn_2_95461' => 'lsa', 'Lsat_1_v5_gn_4_159620' => 'lsa', 'Lsat_1_v5_gn_6_41301' => 'lsa', 'Lsat_1_v5_gn_6_74660' => 'lsa', 'Lsat_1_v5_gn_7_11520' => 'lsa', 'Lsat_1_v5_gn_9_67680' => 'lsa', 'Manes.04G008300' => 'mes', 'Manes.04G008400' => 'mes', 'Manes.04G026500' => 'mes', 'Manes.10G135300' => 'mes', 'Manes.11G157300' => 'mes', 'Manes.12G074000' => 'mes', 'Manes.16G006200' => 'mes', 'Manes.17G026400' => 'mes', 'Mapoly0024s0086' => 'mpo', 'Mapoly0024s0087' => 'mpo', 'Mapoly0071s0057' => 'mpo', 'Mapoly0204s0012' => 'mpo', 'MBI04_g37681_MAGBIO' => 'mbi', 'MBI05_g17779_MAGBIO' => 'mbi', 'MBI12_g31184_MAGBIO' => 'mbi', 'MBI17_g11083_MAGBIO' => 'mbi', 'MBI18_g03883_MAGBIO' => 'mbi', 'MBI18_g28940_MAGBIO' => 'mbi', 'MCO01G690' => 'mco', 'MD03G1109900' => 'mdo', 'MD03G1134800' => 'mdo', 'MD05G1348000' => 'mdo', 'MD10G1322400' => 'mdo', 'MD11G1123300' => 'mdo', 'MD11G1157600' => 'mdo', 'Medtr2g084875' => 'mtr', 'Medtr2g088130' => 'mtr', 'Medtr4g055310' => 'mtr', 'Medtr4g061070' => 'mtr', 'Medtr4g132250' => 'mtr', 'MELO3C004795.2' => 'cme', 'MELO3C004797.2' => 'cme', 'MELO3C007396.2' => 'cme', 'MELO3C019277.2' => 'cme', 'MELO3C021449.2' => 'cme', 'MELO3C025736.2' => 'cme', 'Migut.D02175' => 'egut', 'Migut.H01573' => 'egut', 'Migut.M01327' => 'egut', 'Migut.N02513' => 'egut', 'MSTRG.14638' => 'ama', 'MSTRG.18632' => 'ama', 'MSTRG.7203' => 'ama', 'Nitab4.5_0000533g0140' => 'nta', 'Nitab4.5_0000888g0150' => 'nta', 'Nitab4.5_0001453g0040' => 'nta', 'Nitab4.5_0002827g0090' => 'nta', 'Nitab4.5_0003082g0040' => 'nta', 'Nitab4.5_0007799g0040' => 'nta', 'Nitab4.5_0008983g0010' => 'nta', 'Nitab4.5_0009017g0020' => 'nta', 'Nn1g02132' => 'nnu', 'Nn1g03492' => 'nnu', 'Nn1g03493' => 'nnu', 'Nn1g03494' => 'nnu', 'Nn1g07164' => 'nnu', 'Nn1g07291' => 'nnu', 'Nn2g10655' => 'nnu', 'Nn2g11652' => 'nnu', 'Nn2g14008' => 'nnu', 'Nn3g17476' => 'nnu', 'Nn3g17477' => 'nnu', 'Nn4g22370' => 'nnu', 'Nn4g25255' => 'nnu', 'Nn5g27755' => 'nnu', 'Nn6g34260' => 'nnu', 'Nn6g35041' => 'nnu', 'Oeu005924.1' => 'oeu', 'Oeu008383.1' => 'oeu', 'Oeu014928.1' => 'oeu', 'Oeu019889.1' => 'oeu', 'Oeu022271.1' => 'oeu', 'Oeu025271.1' => 'oeu', 'Oeu036302.1' => 'oeu', 'Oeu044100.1' => 'oeu', 'Os01g0528300' => 'osa', 'Os03g0286200' => 'osa', 'Os04g0406600' => 'osa', 'Os07g0512000' => 'osa', 'Os07g0694600' => 'osa', 'Os08g0411000' => 'osa', 'Os09g0565700' => 'osa', 'Os09g0566050' => 'osa', 'Os10g0523700' => 'osa', 'Peaxi162Scf00002g00514' => 'pax', 'Peaxi162Scf00047g01817' => 'pax', 'Peaxi162Scf00114g00001' => 'pax', 'Peaxi162Scf00147g00613' => 'pax', 'Peaxi162Scf00389g00425' => 'pax', 'PGR042G1139' => 'pgr', 'PGR042G3273' => 'pgr', 'PGR102G2180' => 'pgr', 'PGR119G0234' => 'pgr', 'PGR119G0668' => 'pgr', 'PGSC0003DMG400007122' => 'stu', 'PGSC0003DMG400016478' => 'stu', 'PGSC0003DMG400025374' => 'stu', 'PGSC0003DMG400026536' => 'stu', 'Phvul.003G079600' => 'pvu', 'Phvul.005G115600' => 'pvu', 'Phvul.005G127100' => 'pvu', 'Phvul.006G149500' => 'pvu', 'Phvul.006G149600' => 'pvu', 'Phvul.011G071800' => 'pvu', 'Phvul.011G090400' => 'pvu', 'Potri.004G013400' => 'ptr', 'Potri.004G188100' => 'ptr', 'Potri.008G195500' => 'ptr', 'Potri.009G148800' => 'ptr', 'Potri.011G004700' => 'ptr', 'Pp3c17_22810' => 'ppa', 'Pp3c18_4480' => 'ppa', 'Pp3c19_13030' => 'ppa', 'Pp3c1_33620' => 'ppa', 'Pp3c2_9380' => 'ppa', 'PRCOL_00001023' => 'pco', 'Prupe.3G216300' => 'ppe', 'Prupe.4G019500' => 'ppe', 'Prupe.6G092500' => 'ppe', 'Prupe.6G119200' => 'ppe', 'Psat0s1945g0080' => 'psa', 'Psat0s4167g0040' => 'psa', 'Psat1g185800' => 'psa', 'Psat4g006440' => 'psa', 'Psat4g006480' => 'psa', 'Psat4g168120' => 'psa', 'Psat5g255680' => 'psa', 'Psat5g261760' => 'psa', 'Psat7g222120' => 'psa', 'PSO063G7252' => 'pso', 'PSO170G4778' => 'pso', 'PSO210G2249' => 'pso', 'PSO339G2411' => 'pso', 'PSO339G2457' => 'pso', 'PSO339G2854' => 'pso', 'PSO339G4288' => 'pso', 'PSO339G4615' => 'pso', 'PSO384G2796' => 'pso', 'PSO384G2940' => 'pso', 'PSO384G4227' => 'pso', 'PSO478G1425' => 'pso', 'PSO541G3863' => 'pso', 'PSO675G0507' => 'pso', 'PSO782G0338' => 'pso', 'PSO832G0644' => 'pso', 'QL01p013664' => 'qlo', 'QL01p036598' => 'qlo', 'QL05p072984' => 'qlo', 'QL08p005768' => 'qlo', 'QL08p032743' => 'qlo', 'QL93p0073_0439' => 'qlo', 'QL93p0073_0444' => 'qlo', 'RcHm_v2.0_Chr5g0002851' => 'rch', 'RcHm_v2.0_Chr5g0055201' => 'rch', 'RcHm_v2.0_Chr5g0061191' => 'rch', 'RcHm_v2.0_Chr7g0203231' => 'rch', 'Rhsim01G0208100' => 'rsi', 'Rhsim01G0208200' => 'rsi', 'Rhsim02G0106500' => 'rsi', 'Rhsim03G0107900' => 'rsi', 'Rhsim06G0163400' => 'rsi', 'Rhsim13G0105200' => 'rsi', 'Sabra04G0006300' => 'sbr', 'Sabra04G0127000' => 'sbr', 'Sabra08G0148700' => 'sbr', 'Sabra09G0117400' => 'sbr', 'SalBow1G3326' => 'sbo', 'SalBow3G3228' => 'sbo', 'SalBow6G1634' => 'sbo', 'SalBow6G3603' => 'sbo', 'SalBow6G5266' => 'sbo', 'SalBow7G2265' => 'sbo', 'SalBow8G0850' => 'sbo', 'SalBow8G2592' => 'sbo', 'Sc05g0009240' => 'sci', 'Sc12g0002300' => 'sci', 'Sc21g0000100' => 'sci', 'Sc21g0004720' => 'sci', 'Sed0002949' => 'sed', 'Sed0004114' => 'sed', 'Sed0004306' => 'sed', 'Sed0006172' => 'sed', 'Sed0008413' => 'sed', 'Sed0013809' => 'sed', 'Sed0019556' => 'sed', 'SEGI_03570' => 'sgi', 'SEGI_07859' => 'sgi', 'SEGI_15042' => 'sgi', 'SEGI_16263' => 'sgi', 'SEGI_16552' => 'sgi', 'SEGI_24331' => 'sgi', 'SEGI_27316' => 'sgi', 'SEGI_29521' => 'sgi', 'SEGI_41342' => 'sgi', 'SGA_v2.0_scaffold27G11617' => 'sas', 'SGA_v2.0_scaffold316G48428' => 'sas', 'SGA_v2.0_scaffold49G18261' => 'sas', 'SGA_v2.0_scaffold7G03831' => 'sas', 'SGA_v2.0_scaffold93G28359' => 'sas', 'SHI02210' => 'shi', 'SHI06028' => 'shi', 'SHI06321' => 'shi', 'SMO111G0012' => 'smo', 'SMO228G0080' => 'smo', 'SMO356G0756' => 'smo', 'Solyc02g080620.3' => 'sly', 'Solyc06g074530.1' => 'sly', 'Solyc11g066890.1' => 'sly', 'Solyc11g072520.3' => 'sly', 'Sopen02g025330' => 'spe', 'Sopen06g031000' => 'spe', 'Sopen09g008240' => 'spe', 'Sopen09g025210' => 'spe', 'Sopen11g026600' => 'spe', 'Sopen11g030170' => 'spe', 'Sp1g10420' => 'spa', 'Sp3g06570' => 'spa', 'Sp4g10660' => 'spa', 'Sp5g16460' => 'spa', 'Sp6g22710' => 'spa', 'TAR365G0112' => 'tar', 'TAR369G0717' => 'tar', 'TAR374G0976' => 'tar', 'TAR623G1128' => 'tar', 'TAR626G1937' => 'tar', 'TAR627G0123' => 'tar', 'TAR628G0305' => 'tar', 'TAR636G1176' => 'tar', 'TAR636G2442' => 'tar', 'THA.LOC104800556' => 'tha', 'THA.LOC104809501' => 'tha', 'THA.LOC104815126' => 'tha', 'THA.LOC104815732' => 'tha', 'THA.LOC104823528' => 'tha', 'Thecc.02G365600' => 'tca', 'Thecc.06G222300' => 'tca', 'Thecc.09G261800' => 'tca', 'Thecc.09G291400' => 'tca', 'Thhalv10003028m.g' => 'esa', 'Thhalv10007886m.g' => 'esa', 'Thhalv10016085m.g' => 'esa', 'Thhalv10016681m.g' => 'esa', 'Thhalv10020951m.g' => 'esa', 'TPR.G15598' => 'tpr', 'TPR.G29305' => 'tpr', 'TPR.G32395' => 'tpr', 'TPR.G36998' => 'tpr', 'TPR.G4227' => 'tpr', 'TWI18G1433' => 'twi', 'TWI31G0755' => 'twi', 'TWI38G0912' => 'twi', 'TWI75G1097' => 'twi', 'TWI75G1619' => 'twi', 'TWI79G1336' => 'twi', 'unitig_0.g943' => 'ugi', 'unitig_0.g944' => 'ugi', 'unitig_22.g6646' => 'ugi', 'unitig_37.g12681' => 'ugi', 'unitig_8.g3290' => 'ugi', 'vmacro03278' => 'vma', 'vmacro12197' => 'vma', 'vmacro14478' => 'vma', 'vmacro15787' => 'vma', 'vmacro15789' => 'vma', 'vmacro15790' => 'vma', 'vmacro15806' => 'vma', 'vmacro22907' => 'vma', 'vmacro22908' => 'vma', 'vmacro22909' => 'vma', 'vmacro23108' => 'vma', 'VMungo0540G0540' => 'vmu', 'VMungo0540G2468' => 'vmu', 'VMungo1080G0390' => 'vmu', 'VMungo1080G1165' => 'vmu', 'VMungo1127G0170' => 'vmu', 'VMungo1127G2099' => 'vmu', 'VMungo1215G3013' => 'vmu', 'Zm00001eb013110' => 'zma', 'Zm00001eb084260' => 'zma', 'Zm00001eb096110' => 'zma', 'Zm00001eb217510' => 'zma', 'Zm00001eb322550' => 'zma', 'Zm00001eb390770' => 'zma', 'Zm00001eb397170' => 'zma', 'Zm00001eb404610' => 'zma', 'Zm00001eb421790' => 'zma' ) $gf_id = 'HOM05D000911' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000911' ) $data_identifier = 'HOM05D000911' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 16, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 5, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 6, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 8, 'nnu' => (int) 16, 'oeu' => (int) 8, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 5, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 16, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421790' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000911', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27780' => 'bna', 'A03p35380' => 'bna', 'A04p21160' => 'bna', 'A05p40570' => 'bna', 'A06p26900' => 'bna', 'A08p33230' => 'bna', 'A09p65960' => 'bna', 'A10p18290' => 'bna', 'Aa31LG1G12990' => 'aar', 'Aa31LG1G2980' => 'aar', 'Aa31LG4G14320' => 'aar', 'Aa31LG7G11800' => 'aar', 'Aa31sc36G50' => 'aar', 'Aa31sc36G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3721' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5459' => 'aag', 'Actinidia03028' => 'ach', 'Actinidia03753' => 'ach', 'Actinidia04187' => 'ach', 'Actinidia05509' => 'ach', 'Actinidia24180' => 'ach', 'Actinidia26906' => 'ach', 'Actinidia37097' => 'ach', 'Actinidia38249' => 'ach', 'Ah.01g003470' => 'amhyb', 'Ah.01g004580' => 'amhyb', 'Ah.01g014850' => 'amhyb', 'Ah.01g016830' => 'amhyb', 'Ah.14g088000' => 'amhyb', 'AL1G22980' => 'aly', 'AL3G18990' => 'aly', 'AL4G22440' => 'aly', 'AL4G33180' => 'aly', 'AL5G22920' => 'aly', 'AL6G33660' => 'aly', 'AL8G20720' => 'aly', 'Aqoxy1G00935' => 'aox', 'Aqoxy1G02094' => 'aox', 'Aqoxy2G01239' => 'aox', 'Aqoxy4G01870' => 'aox', 'Aqoxy7G00450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.36ZVTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71EM27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5D6C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH3WRE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3NCM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RIM768' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YB5YRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z36GDV' => 'arhy', 'AT1G08250' => 'ath', 'AT1G11790' => 'ath', 'AT2G27820' => 'ath', 'AT3G07630' => 'ath', 'AT3G44720' => 'ath', 'AT5G22630' => 'ath', 'ATR0693G304' => 'atr', 'ATR0794G109' => 'atr', 'ATR0820G120' => 'atr', 'ATR1159G064' => 'atr', 'Atru.chr10.2239' => 'acertr', 'Atru.chr3.3371' => 'acertr', 'Atru.chr6.3202' => 'acertr', 'AUR62006499' => 'cqu', 'AUR62012718' => 'cqu', 'AUR62021938' => 'cqu', 'AUR62023932' => 'cqu', 'AUR62025034' => 'cqu', 'AUR62025035' => 'cqu', 'AUR62038307' => 'cqu', 'AUR62043466' => 'cqu', 'BcaB02g10748' => 'bca', 'BcaB03g13231' => 'bca', 'BcaB03g14689' => 'bca', 'BcaB05g22716' => 'bca', 'BcaB06g28172' => 'bca', 'BcaB08g36413' => 'bca', 'BcaC01g02186' => 'bca', 'BcaC01g04272' => 'bca', 'BcaC02g08080' => 'bca', 'BcaC02g08227' => 'bca', 'BcaC03g13901' => 'bca', 'BcaC04g19593' => 'bca', 'BcaC04g20874' => 'bca', 'BcaC05g29557' => 'bca', 'BcaC06g35505' => 'bca', 'BcaC07g41954' => 'bca', 'BcaC07g41955' => 'bca', 'BcaC07g41956' => 'bca', 'BcaC07g42519' => 'bca', 'BcaC07g42520' => 'bca', 'BcaC07g42523' => 'bca', 'BcaC07g42524' => 'bca', 'BcaC07g42525' => 'bca', 'BcaC08g47480' => 'bca', 'BcaC08g47481' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00530' => 'bna', 'BolC2t07178H' => 'bol', 'BolC3t16567H' => 'bol', 'BolC4t27234H' => 'bol', 'BolC5t29728H' => 'bol', 'BolC5t34622H' => 'bol', 'BolC6t40321H' => 'bol', 'BolC7t42028H' => 'bol', 'BolC8t49125H' => 'bol', 'BolC8t52538H' => 'bol', 'BolC8t52539H' => 'bol', 'BolC9t56681H' => 'bol', 'BolC9t58266H' => 'bol', 'BolSC21t60294H' => 'bol', 'BraA02t05670Z' => 'bra', 'BraA03t12716Z' => 'bra', 'BraA04t17685Z' => 'bra', 'BraA05t22788Z' => 'bra', 'BraA06t24032Z' => 'bra', 'BraA06t25625Z' => 'bra', 'BraA07t27930Z' => 'bra', 'BraA08t35242Z' => 'bra', 'BraA09t38609Z' => 'bra', 'BraA10t43905Z' => 'bra', 'C02p11060' => 'bna', 'C03p42990' => 'bna', 'C03p67310' => 'bna', 'C04p56990' => 'bna', 'C04p58660' => 'bna', 'C05p09890' => 'bna', 'C05p59680' => 'bna', 'C06p19830' => 'bna', 'C06p53040' => 'bna', 'C07p15230' => 'bna', 'C08p50070' => 'bna', 'C08p50090' => 'bna', 'C09p38330' => 'bna', 'C09p53940' => 'bna', 'CAN.G1014.1' => 'can', 'CAN.G644.30' => 'can', 'CAN.G84.47' => 'can', 'CAN.G919.8' => 'can', 'CANSAT54G0113' => 'cansat', 'CANSAT54G1286' => 'cansat', 'CANSAT64G1020' => 'cansat', 'CARHR008080' => 'chi', 'CARHR008090' => 'chi', 'CARHR012130' => 'chi', 'CARHR038390' => 'chi', 'CARHR082330' => 'chi', 'CARHR120520' => 'chi', 'CARHR151470' => 'chi', 'CARHR190950' => 'chi', 'Carub.0001s0760' => 'cru', 'Carub.0001s1146' => 'cru', 'Carub.0003s0721' => 'cru', 'Carub.0004s0858' => 'cru', 'Carub.0005s1040' => 'cru', 'Carub.0006s2035' => 'cru', 'Carub.0015s0005' => 'cru', 'Ca_01607_v3' => 'car', 'Ca_01677_v3' => 'car', 'Ca_06087_v3' => 'car', 'Ca_19238_v3' => 'car', 'Ca_19373_v3' => 'car', 'Ca_21079_v3' => 'car', 'CBR_g54016' => 'cbr', 'CBR_g54018' => 'cbr', 'CBR_g54020' => 'cbr', 'Cc01_g09780' => 'ccan', 'Cc01_g11680' => 'ccan', 'Cc02_g15610' => 'ccan', 'Cc05_g04350' => 'ccan', 'Cc09_g01580' => 'ccan', 'CDE01G0795' => 'cde', 'CDE02G2024' => 'cde', 'CDE02G2260' => 'cde', 'CDE02G4561' => 'cde', 'CDE05G2733' => 'cde', 'CDE05G3422' => 'cde', 'CDE06G2003' => 'cde', 'CDE08G0576' => 'cde', 'CDE09G0048' => 'cde', 'CDE11G0805' => 'cde', 'Cfa003644' => 'cfa', 'Cfa006290' => 'cfa', 'Cfa010080' => 'cfa', 'Cfa011376' => 'cfa', 'Cfa011576' => 'cfa', 'Cfa011577' => 'cfa', 'Cfa014389' => 'cfa', 'Ciclev10006044m.g' => 'ccl', 'Ciclev10006954m.g' => 'ccl', 'Ciclev10015131m.g' => 'ccl', 'Ciclev10015580m.g' => 'ccl', 'Ciclev10028359m.g' => 'ccl', 'Ciclev10028573m.g' => 'ccl', 'CiPaw.03G159300' => 'cil', 'CiPaw.04G115100' => 'cil', 'CiPaw.09G092800' => 'cil', 'CiPaw.10G071800' => 'cil', 'CiPaw.13G105800' => 'cil', 'CiPaw.13G141000' => 'cil', 'CiPaw.14G103400' => 'cil', 'ClCG01G012700' => 'cla', 'ClCG01G012720' => 'cla', 'ClCG01G021920' => 'cla', 'ClCG02G008870' => 'cla', 'ClCG02G020840' => 'cla', 'ClCG02G021930' => 'cla', 'COL.COLO4_19302' => 'col', 'COL.COLO4_25262' => 'col', 'COL.COLO4_31788' => 'col', 'Cpa.g.c34684' => 'cpa', 'Cpa.g.c36520.1' => 'cpa', 'Cpa.g.c45626' => 'cpa', 'Cpa.g.sc121.17' => 'cpa', 'Cpa.g.sc13.22' => 'cpa', 'Cpa.g.sc87.88' => 'cpa', 'Cre06.g261800' => 'cre', 'CsaV3_1G014500' => 'csa', 'CsaV3_1G014510' => 'csa', 'CsaV3_2G034880' => 'csa', 'CsaV3_6G014760' => 'csa', 'CsaV3_6G021500' => 'csa', 'CsaV3_6G048980' => 'csa', 'CSS0002511' => 'camsi', 'CSS0007556' => 'camsi', 'CSS0008532' => 'camsi', 'CSS0009709' => 'camsi', 'CSS0010486' => 'camsi', 'CSS0016768' => 'camsi', 'CSS0023512' => 'camsi', 'CSS0025341' => 'camsi', 'CSS0027999' => 'camsi', 'CSS0028944' => 'camsi', 'CSS0032292' => 'camsi', 'CSS0032464' => 'camsi', 'CSS0037153' => 'camsi', 'CSS0039256' => 'camsi', 'CSS0048392' => 'camsi', 'CSS0050458' => 'camsi', 'DCAR_004224' => 'dca', 'DCAR_006147' => 'dca', 'DCAR_006465' => 'dca', 'DCAR_008159' => 'dca', 'DCAR_012164' => 'dca', 'DCAR_019764' => 'dca', 'Dinv05418' => 'din', 'Dinv10839' => 'din', 'Dinv12521' => 'din', 'Dinv13900' => 'din', 'Dinv29426' => 'din', 'Duzib150G0263' => 'dzi', 'Duzib168G1178' => 'dzi', 'Duzib168G1924' => 'dzi', 'Duzib170G0299' => 'dzi', 'Duzib170G0813' => 'dzi', 'Duzib235G1128' => 'dzi', 'Duzib248G1060' => 'dzi', 'ECA232G1910' => 'eca', 'ECA233G4621' => 'eca', 'ECA238G1216' => 'eca', 'ECA238G1784' => 'eca', 'ECA248G1242' => 'eca', 'EL10Ac8g20071' => 'bvu', 'EL10Ac9g21086' => 'bvu', 'EL10Ac9g22407' => 'bvu', 'EL10Ac9g22412' => 'bvu', 'Eucgr.A01119' => 'egr', 'Eucgr.E04043' => 'egr', 'Eucgr.J00428' => 'egr', 'Eucgr.J00958' => 'egr', 'FAN11G3091' => 'fan', 'FAN11G3651' => 'fan', 'FAN16G2566' => 'fan', 'FAN21G3155' => 'fan', 'FAN21G3400' => 'fan', 'FAN21G3543' => 'fan', 'FAN25G0234' => 'fan', 'FAN25G1422' => 'fan', 'FAN25G3392' => 'fan', 'FvH4_3g01940' => 'fve', 'FvH4_3g29870' => 'fve', 'FvH4_3g33680' => 'fve', 'Glyma.09G004200' => 'gma', 'Glyma.11G151288' => 'gma', 'Glyma.11G189100' => 'gma', 'Glyma.12G072500' => 'gma', 'Glyma.12G085500' => 'gma', 'Glyma.12G181800' => 'gma', 'Glyma.12G193000' => 'gma', 'Glyma.13G309300' => 'gma', 'Glyma.13G319000' => 'gma', 'Glyma.17G012600' => 'gma', 'Gohir.A06G148600' => 'ghi', 'Gohir.A07G115800' => 'ghi', 'Gohir.A08G003600' => 'ghi', 'Gohir.A09G093300' => 'ghi', 'Gohir.A09G105400' => 'ghi', 'Gohir.A09G105500' => 'ghi', 'Gohir.D06G154600' => 'ghi', 'Gohir.D07G120200' => 'ghi', 'Gohir.D08G013900' => 'ghi', 'Gohir.D09G093100' => 'ghi', 'Gohir.D09G102200' => 'ghi', 'Gohir.D09G102300' => 'ghi', 'Gorai.001G129400' => 'gra', 'Gorai.004G008200' => 'gra', 'Gorai.006G109800' => 'gra', 'Gorai.006G119500' => 'gra', 'Gorai.006G121300' => 'gra', 'Gorai.010G180700' => 'gra', 'GSVIVG01012716001' => 'vvi', 'GSVIVG01025118001' => 'vvi', 'GSVIVG01030439001' => 'vvi', 'GSVIVG01031397001' => 'vvi', 'HanXRQChr01g0004201' => 'han', 'HanXRQChr02g0054941' => 'han', 'HanXRQChr05g0141811' => 'han', 'HanXRQChr07g0197751' => 'han', 'HanXRQChr11g0346691' => 'han', 'HanXRQChr13g0396971' => 'han', 'HanXRQChr14g0432951' => 'han', 'HanXRQChr14g0452001' => 'han', 'HanXRQChr15g0496681' => 'han', 'HanXRQChr17g0557491' => 'han', 'HanXRQChr17g0557501' => 'han', 'Haze_06809' => 'cav', 'Haze_12852' => 'cav', 'Haze_15850' => 'cav', 'Haze_23446' => 'cav', 'Haze_23942' => 'cav', 'Haze_23943' => 'cav', 'Hma1.2p1_0091F.1_g046450' => 'hma', 'Hma1.2p1_0128F.1_g059910' => 'hma', 'Hma1.2p1_0249F.1_g102260' => 'hma', 'Hma1.2p1_0453F.1_g156190' => 'hma', 'Hma1.2p1_0695F.1_g204380' => 'hma', 'Hma1.2p1_0749F.1_g212650' => 'hma', 'Hma1.2p1_2156F.1_g315420' => 'hma', 'Hma1.2p1_2686F.1_g326940' => 'hma', 'HPP92_006428' => 'vpl', 'HPP92_012069' => 'vpl', 'HPP92_014129' => 'vpl', 'HPP92_014133' => 'vpl', 'HPP92_017315' => 'vpl', 'HPP92_026445' => 'vpl', 'HPP92_026446' => 'vpl', 'Hund00774' => 'sun', 'Hund07682' => 'sun', 'Hund21413' => 'sun', 'Hund23462' => 'sun', 'Hund23463' => 'sun', 'Lalb_Chr03g0027911' => 'lal', 'Lalb_Chr13g0304271' => 'lal', 'Lalb_Chr19g0137471' => 'lal', 'Lalb_Chr22g0350651' => 'lal', 'Lalb_Chr24g0395151' => 'lal', 'Lj1A1231T40' => 'lonja', 'Lj1A221T48' => 'lonja', 'Lj1C924T12' => 'lonja', 'Lj2C993G6' => 'lonja', 'Lj3g0005790' => 'lja', 'Lj3g0015432' => 'lja', 'Lj3g0017722' => 'lja', 'Lj3g0018497' => 'lja', 'Lj4g0025071' => 'lja', 'Lsat_1_v5_gn_1_129680' => 'lsa', 'Lsat_1_v5_gn_2_25321' => 'lsa', 'Lsat_1_v5_gn_2_95461' => 'lsa', 'Lsat_1_v5_gn_4_159620' => 'lsa', 'Lsat_1_v5_gn_6_41301' => 'lsa', 'Lsat_1_v5_gn_6_74660' => 'lsa', 'Lsat_1_v5_gn_7_11520' => 'lsa', 'Lsat_1_v5_gn_9_67680' => 'lsa', 'Manes.04G008300' => 'mes', 'Manes.04G008400' => 'mes', 'Manes.04G026500' => 'mes', 'Manes.10G135300' => 'mes', 'Manes.11G157300' => 'mes', 'Manes.12G074000' => 'mes', 'Manes.16G006200' => 'mes', 'Manes.17G026400' => 'mes', 'Mapoly0024s0086' => 'mpo', 'Mapoly0024s0087' => 'mpo', 'Mapoly0071s0057' => 'mpo', 'Mapoly0204s0012' => 'mpo', 'MBI04_g37681_MAGBIO' => 'mbi', 'MBI05_g17779_MAGBIO' => 'mbi', 'MBI12_g31184_MAGBIO' => 'mbi', 'MBI17_g11083_MAGBIO' => 'mbi', 'MBI18_g03883_MAGBIO' => 'mbi', 'MBI18_g28940_MAGBIO' => 'mbi', 'MCO01G690' => 'mco', 'MD03G1109900' => 'mdo', 'MD03G1134800' => 'mdo', 'MD05G1348000' => 'mdo', 'MD10G1322400' => 'mdo', 'MD11G1123300' => 'mdo', 'MD11G1157600' => 'mdo', 'Medtr2g084875' => 'mtr', 'Medtr2g088130' => 'mtr', 'Medtr4g055310' => 'mtr', 'Medtr4g061070' => 'mtr', 'Medtr4g132250' => 'mtr', 'MELO3C004795.2' => 'cme', 'MELO3C004797.2' => 'cme', 'MELO3C007396.2' => 'cme', 'MELO3C019277.2' => 'cme', 'MELO3C021449.2' => 'cme', 'MELO3C025736.2' => 'cme', 'Migut.D02175' => 'egut', 'Migut.H01573' => 'egut', 'Migut.M01327' => 'egut', 'Migut.N02513' => 'egut', 'MSTRG.14638' => 'ama', 'MSTRG.18632' => 'ama', 'MSTRG.7203' => 'ama', 'Nitab4.5_0000533g0140' => 'nta', 'Nitab4.5_0000888g0150' => 'nta', 'Nitab4.5_0001453g0040' => 'nta', 'Nitab4.5_0002827g0090' => 'nta', 'Nitab4.5_0003082g0040' => 'nta', 'Nitab4.5_0007799g0040' => 'nta', 'Nitab4.5_0008983g0010' => 'nta', 'Nitab4.5_0009017g0020' => 'nta', 'Nn1g02132' => 'nnu', 'Nn1g03492' => 'nnu', 'Nn1g03493' => 'nnu', 'Nn1g03494' => 'nnu', 'Nn1g07164' => 'nnu', 'Nn1g07291' => 'nnu', 'Nn2g10655' => 'nnu', 'Nn2g11652' => 'nnu', 'Nn2g14008' => 'nnu', 'Nn3g17476' => 'nnu', 'Nn3g17477' => 'nnu', 'Nn4g22370' => 'nnu', 'Nn4g25255' => 'nnu', 'Nn5g27755' => 'nnu', 'Nn6g34260' => 'nnu', 'Nn6g35041' => 'nnu', 'Oeu005924.1' => 'oeu', 'Oeu008383.1' => 'oeu', 'Oeu014928.1' => 'oeu', 'Oeu019889.1' => 'oeu', 'Oeu022271.1' => 'oeu', 'Oeu025271.1' => 'oeu', 'Oeu036302.1' => 'oeu', 'Oeu044100.1' => 'oeu', 'Os01g0528300' => 'osa', 'Os03g0286200' => 'osa', 'Os04g0406600' => 'osa', 'Os07g0512000' => 'osa', 'Os07g0694600' => 'osa', 'Os08g0411000' => 'osa', 'Os09g0565700' => 'osa', 'Os09g0566050' => 'osa', 'Os10g0523700' => 'osa', 'Peaxi162Scf00002g00514' => 'pax', 'Peaxi162Scf00047g01817' => 'pax', 'Peaxi162Scf00114g00001' => 'pax', 'Peaxi162Scf00147g00613' => 'pax', 'Peaxi162Scf00389g00425' => 'pax', 'PGR042G1139' => 'pgr', 'PGR042G3273' => 'pgr', 'PGR102G2180' => 'pgr', 'PGR119G0234' => 'pgr', 'PGR119G0668' => 'pgr', 'PGSC0003DMG400007122' => 'stu', 'PGSC0003DMG400016478' => 'stu', 'PGSC0003DMG400025374' => 'stu', 'PGSC0003DMG400026536' => 'stu', 'Phvul.003G079600' => 'pvu', 'Phvul.005G115600' => 'pvu', 'Phvul.005G127100' => 'pvu', 'Phvul.006G149500' => 'pvu', 'Phvul.006G149600' => 'pvu', 'Phvul.011G071800' => 'pvu', 'Phvul.011G090400' => 'pvu', 'Potri.004G013400' => 'ptr', 'Potri.004G188100' => 'ptr', 'Potri.008G195500' => 'ptr', 'Potri.009G148800' => 'ptr', 'Potri.011G004700' => 'ptr', 'Pp3c17_22810' => 'ppa', 'Pp3c18_4480' => 'ppa', 'Pp3c19_13030' => 'ppa', 'Pp3c1_33620' => 'ppa', 'Pp3c2_9380' => 'ppa', 'PRCOL_00001023' => 'pco', 'Prupe.3G216300' => 'ppe', 'Prupe.4G019500' => 'ppe', 'Prupe.6G092500' => 'ppe', 'Prupe.6G119200' => 'ppe', 'Psat0s1945g0080' => 'psa', 'Psat0s4167g0040' => 'psa', 'Psat1g185800' => 'psa', 'Psat4g006440' => 'psa', 'Psat4g006480' => 'psa', 'Psat4g168120' => 'psa', 'Psat5g255680' => 'psa', 'Psat5g261760' => 'psa', 'Psat7g222120' => 'psa', 'PSO063G7252' => 'pso', 'PSO170G4778' => 'pso', 'PSO210G2249' => 'pso', 'PSO339G2411' => 'pso', 'PSO339G2457' => 'pso', 'PSO339G2854' => 'pso', 'PSO339G4288' => 'pso', 'PSO339G4615' => 'pso', 'PSO384G2796' => 'pso', 'PSO384G2940' => 'pso', 'PSO384G4227' => 'pso', 'PSO478G1425' => 'pso', 'PSO541G3863' => 'pso', 'PSO675G0507' => 'pso', 'PSO782G0338' => 'pso', 'PSO832G0644' => 'pso', 'QL01p013664' => 'qlo', 'QL01p036598' => 'qlo', 'QL05p072984' => 'qlo', 'QL08p005768' => 'qlo', 'QL08p032743' => 'qlo', 'QL93p0073_0439' => 'qlo', 'QL93p0073_0444' => 'qlo', 'RcHm_v2.0_Chr5g0002851' => 'rch', 'RcHm_v2.0_Chr5g0055201' => 'rch', 'RcHm_v2.0_Chr5g0061191' => 'rch', 'RcHm_v2.0_Chr7g0203231' => 'rch', 'Rhsim01G0208100' => 'rsi', 'Rhsim01G0208200' => 'rsi', 'Rhsim02G0106500' => 'rsi', 'Rhsim03G0107900' => 'rsi', 'Rhsim06G0163400' => 'rsi', 'Rhsim13G0105200' => 'rsi', 'Sabra04G0006300' => 'sbr', 'Sabra04G0127000' => 'sbr', 'Sabra08G0148700' => 'sbr', 'Sabra09G0117400' => 'sbr', 'SalBow1G3326' => 'sbo', 'SalBow3G3228' => 'sbo', 'SalBow6G1634' => 'sbo', 'SalBow6G3603' => 'sbo', 'SalBow6G5266' => 'sbo', 'SalBow7G2265' => 'sbo', 'SalBow8G0850' => 'sbo', 'SalBow8G2592' => 'sbo', 'Sc05g0009240' => 'sci', 'Sc12g0002300' => 'sci', 'Sc21g0000100' => 'sci', 'Sc21g0004720' => 'sci', 'Sed0002949' => 'sed', 'Sed0004114' => 'sed', 'Sed0004306' => 'sed', 'Sed0006172' => 'sed', 'Sed0008413' => 'sed', 'Sed0013809' => 'sed', 'Sed0019556' => 'sed', 'SEGI_03570' => 'sgi', 'SEGI_07859' => 'sgi', 'SEGI_15042' => 'sgi', 'SEGI_16263' => 'sgi', 'SEGI_16552' => 'sgi', 'SEGI_24331' => 'sgi', 'SEGI_27316' => 'sgi', 'SEGI_29521' => 'sgi', 'SEGI_41342' => 'sgi', 'SGA_v2.0_scaffold27G11617' => 'sas', 'SGA_v2.0_scaffold316G48428' => 'sas', 'SGA_v2.0_scaffold49G18261' => 'sas', 'SGA_v2.0_scaffold7G03831' => 'sas', 'SGA_v2.0_scaffold93G28359' => 'sas', 'SHI02210' => 'shi', 'SHI06028' => 'shi', 'SHI06321' => 'shi', 'SMO111G0012' => 'smo', 'SMO228G0080' => 'smo', 'SMO356G0756' => 'smo', 'Solyc02g080620.3' => 'sly', 'Solyc06g074530.1' => 'sly', 'Solyc11g066890.1' => 'sly', 'Solyc11g072520.3' => 'sly', 'Sopen02g025330' => 'spe', 'Sopen06g031000' => 'spe', 'Sopen09g008240' => 'spe', 'Sopen09g025210' => 'spe', 'Sopen11g026600' => 'spe', 'Sopen11g030170' => 'spe', 'Sp1g10420' => 'spa', 'Sp3g06570' => 'spa', 'Sp4g10660' => 'spa', 'Sp5g16460' => 'spa', 'Sp6g22710' => 'spa', 'TAR365G0112' => 'tar', 'TAR369G0717' => 'tar', 'TAR374G0976' => 'tar', 'TAR623G1128' => 'tar', 'TAR626G1937' => 'tar', 'TAR627G0123' => 'tar', 'TAR628G0305' => 'tar', 'TAR636G1176' => 'tar', 'TAR636G2442' => 'tar', 'THA.LOC104800556' => 'tha', 'THA.LOC104809501' => 'tha', 'THA.LOC104815126' => 'tha', 'THA.LOC104815732' => 'tha', 'THA.LOC104823528' => 'tha', 'Thecc.02G365600' => 'tca', 'Thecc.06G222300' => 'tca', 'Thecc.09G261800' => 'tca', 'Thecc.09G291400' => 'tca', 'Thhalv10003028m.g' => 'esa', 'Thhalv10007886m.g' => 'esa', 'Thhalv10016085m.g' => 'esa', 'Thhalv10016681m.g' => 'esa', 'Thhalv10020951m.g' => 'esa', 'TPR.G15598' => 'tpr', 'TPR.G29305' => 'tpr', 'TPR.G32395' => 'tpr', 'TPR.G36998' => 'tpr', 'TPR.G4227' => 'tpr', 'TWI18G1433' => 'twi', 'TWI31G0755' => 'twi', 'TWI38G0912' => 'twi', 'TWI75G1097' => 'twi', 'TWI75G1619' => 'twi', 'TWI79G1336' => 'twi', 'unitig_0.g943' => 'ugi', 'unitig_0.g944' => 'ugi', 'unitig_22.g6646' => 'ugi', 'unitig_37.g12681' => 'ugi', 'unitig_8.g3290' => 'ugi', 'vmacro03278' => 'vma', 'vmacro12197' => 'vma', 'vmacro14478' => 'vma', 'vmacro15787' => 'vma', 'vmacro15789' => 'vma', 'vmacro15790' => 'vma', 'vmacro15806' => 'vma', 'vmacro22907' => 'vma', 'vmacro22908' => 'vma', 'vmacro22909' => 'vma', 'vmacro23108' => 'vma', 'VMungo0540G0540' => 'vmu', 'VMungo0540G2468' => 'vmu', 'VMungo1080G0390' => 'vmu', 'VMungo1080G1165' => 'vmu', 'VMungo1127G0170' => 'vmu', 'VMungo1127G2099' => 'vmu', 'VMungo1215G3013' => 'vmu', 'Zm00001eb013110' => 'zma', 'Zm00001eb084260' => 'zma', 'Zm00001eb096110' => 'zma', 'Zm00001eb217510' => 'zma', 'Zm00001eb322550' => 'zma', 'Zm00001eb390770' => 'zma', 'Zm00001eb397170' => 'zma', 'Zm00001eb404610' => 'zma', 'Zm00001eb421790' => 'zma' ), 'gf_id' => 'HOM05D000911', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000911' ), 'data_identifier' => 'HOM05D000911', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000911', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27780' => 'bna', 'A03p35380' => 'bna', 'A04p21160' => 'bna', 'A05p40570' => 'bna', 'A06p26900' => 'bna', 'A08p33230' => 'bna', 'A09p65960' => 'bna', 'A10p18290' => 'bna', 'Aa31LG1G12990' => 'aar', 'Aa31LG1G2980' => 'aar', 'Aa31LG4G14320' => 'aar', 'Aa31LG7G11800' => 'aar', 'Aa31sc36G50' => 'aar', 'Aa31sc36G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3721' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5459' => 'aag', 'Actinidia03028' => 'ach', 'Actinidia03753' => 'ach', 'Actinidia04187' => 'ach', 'Actinidia05509' => 'ach', 'Actinidia24180' => 'ach', 'Actinidia26906' => 'ach', 'Actinidia37097' => 'ach', 'Actinidia38249' => 'ach', 'Ah.01g003470' => 'amhyb', 'Ah.01g004580' => 'amhyb', 'Ah.01g014850' => 'amhyb', 'Ah.01g016830' => 'amhyb', 'Ah.14g088000' => 'amhyb', 'AL1G22980' => 'aly', 'AL3G18990' => 'aly', 'AL4G22440' => 'aly', 'AL4G33180' => 'aly', 'AL5G22920' => 'aly', 'AL6G33660' => 'aly', 'AL8G20720' => 'aly', 'Aqoxy1G00935' => 'aox', 'Aqoxy1G02094' => 'aox', 'Aqoxy2G01239' => 'aox', 'Aqoxy4G01870' => 'aox', 'Aqoxy7G00450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.36ZVTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71EM27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5D6C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH3WRE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3NCM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RIM768' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YB5YRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z36GDV' => 'arhy', 'AT1G08250' => 'ath', 'AT1G11790' => 'ath', 'AT2G27820' => 'ath', 'AT3G07630' => 'ath', 'AT3G44720' => 'ath', 'AT5G22630' => 'ath', 'ATR0693G304' => 'atr', 'ATR0794G109' => 'atr', 'ATR0820G120' => 'atr', 'ATR1159G064' => 'atr', 'Atru.chr10.2239' => 'acertr', 'Atru.chr3.3371' => 'acertr', 'Atru.chr6.3202' => 'acertr', 'AUR62006499' => 'cqu', 'AUR62012718' => 'cqu', 'AUR62021938' => 'cqu', 'AUR62023932' => 'cqu', 'AUR62025034' => 'cqu', 'AUR62025035' => 'cqu', 'AUR62038307' => 'cqu', 'AUR62043466' => 'cqu', 'BcaB02g10748' => 'bca', 'BcaB03g13231' => 'bca', 'BcaB03g14689' => 'bca', 'BcaB05g22716' => 'bca', 'BcaB06g28172' => 'bca', 'BcaB08g36413' => 'bca', 'BcaC01g02186' => 'bca', 'BcaC01g04272' => 'bca', 'BcaC02g08080' => 'bca', 'BcaC02g08227' => 'bca', 'BcaC03g13901' => 'bca', 'BcaC04g19593' => 'bca', 'BcaC04g20874' => 'bca', 'BcaC05g29557' => 'bca', 'BcaC06g35505' => 'bca', 'BcaC07g41954' => 'bca', 'BcaC07g41955' => 'bca', 'BcaC07g41956' => 'bca', 'BcaC07g42519' => 'bca', 'BcaC07g42520' => 'bca', 'BcaC07g42523' => 'bca', 'BcaC07g42524' => 'bca', 'BcaC07g42525' => 'bca', 'BcaC08g47480' => 'bca', 'BcaC08g47481' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00530' => 'bna', 'BolC2t07178H' => 'bol', 'BolC3t16567H' => 'bol', 'BolC4t27234H' => 'bol', 'BolC5t29728H' => 'bol', 'BolC5t34622H' => 'bol', 'BolC6t40321H' => 'bol', 'BolC7t42028H' => 'bol', 'BolC8t49125H' => 'bol', 'BolC8t52538H' => 'bol', 'BolC8t52539H' => 'bol', 'BolC9t56681H' => 'bol', 'BolC9t58266H' => 'bol', 'BolSC21t60294H' => 'bol', 'BraA02t05670Z' => 'bra', 'BraA03t12716Z' => 'bra', 'BraA04t17685Z' => 'bra', 'BraA05t22788Z' => 'bra', 'BraA06t24032Z' => 'bra', 'BraA06t25625Z' => 'bra', 'BraA07t27930Z' => 'bra', 'BraA08t35242Z' => 'bra', 'BraA09t38609Z' => 'bra', 'BraA10t43905Z' => 'bra', 'C02p11060' => 'bna', 'C03p42990' => 'bna', 'C03p67310' => 'bna', 'C04p56990' => 'bna', 'C04p58660' => 'bna', 'C05p09890' => 'bna', 'C05p59680' => 'bna', 'C06p19830' => 'bna', 'C06p53040' => 'bna', 'C07p15230' => 'bna', 'C08p50070' => 'bna', 'C08p50090' => 'bna', 'C09p38330' => 'bna', 'C09p53940' => 'bna', 'CAN.G1014.1' => 'can', 'CAN.G644.30' => 'can', 'CAN.G84.47' => 'can', 'CAN.G919.8' => 'can', 'CANSAT54G0113' => 'cansat', 'CANSAT54G1286' => 'cansat', 'CANSAT64G1020' => 'cansat', 'CARHR008080' => 'chi', 'CARHR008090' => 'chi', 'CARHR012130' => 'chi', 'CARHR038390' => 'chi', 'CARHR082330' => 'chi', 'CARHR120520' => 'chi', 'CARHR151470' => 'chi', 'CARHR190950' => 'chi', 'Carub.0001s0760' => 'cru', 'Carub.0001s1146' => 'cru', 'Carub.0003s0721' => 'cru', 'Carub.0004s0858' => 'cru', 'Carub.0005s1040' => 'cru', 'Carub.0006s2035' => 'cru', 'Carub.0015s0005' => 'cru', 'Ca_01607_v3' => 'car', 'Ca_01677_v3' => 'car', 'Ca_06087_v3' => 'car', 'Ca_19238_v3' => 'car', 'Ca_19373_v3' => 'car', 'Ca_21079_v3' => 'car', 'CBR_g54016' => 'cbr', 'CBR_g54018' => 'cbr', 'CBR_g54020' => 'cbr', 'Cc01_g09780' => 'ccan', 'Cc01_g11680' => 'ccan', 'Cc02_g15610' => 'ccan', 'Cc05_g04350' => 'ccan', 'Cc09_g01580' => 'ccan', 'CDE01G0795' => 'cde', 'CDE02G2024' => 'cde', 'CDE02G2260' => 'cde', 'CDE02G4561' => 'cde', 'CDE05G2733' => 'cde', 'CDE05G3422' => 'cde', 'CDE06G2003' => 'cde', 'CDE08G0576' => 'cde', 'CDE09G0048' => 'cde', 'CDE11G0805' => 'cde', 'Cfa003644' => 'cfa', 'Cfa006290' => 'cfa', 'Cfa010080' => 'cfa', 'Cfa011376' => 'cfa', 'Cfa011576' => 'cfa', 'Cfa011577' => 'cfa', 'Cfa014389' => 'cfa', 'Ciclev10006044m.g' => 'ccl', 'Ciclev10006954m.g' => 'ccl', 'Ciclev10015131m.g' => 'ccl', 'Ciclev10015580m.g' => 'ccl', 'Ciclev10028359m.g' => 'ccl', 'Ciclev10028573m.g' => 'ccl', 'CiPaw.03G159300' => 'cil', 'CiPaw.04G115100' => 'cil', 'CiPaw.09G092800' => 'cil', 'CiPaw.10G071800' => 'cil', 'CiPaw.13G105800' => 'cil', 'CiPaw.13G141000' => 'cil', 'CiPaw.14G103400' => 'cil', 'ClCG01G012700' => 'cla', 'ClCG01G012720' => 'cla', 'ClCG01G021920' => 'cla', 'ClCG02G008870' => 'cla', 'ClCG02G020840' => 'cla', 'ClCG02G021930' => 'cla', 'COL.COLO4_19302' => 'col', 'COL.COLO4_25262' => 'col', 'COL.COLO4_31788' => 'col', 'Cpa.g.c34684' => 'cpa', 'Cpa.g.c36520.1' => 'cpa', 'Cpa.g.c45626' => 'cpa', 'Cpa.g.sc121.17' => 'cpa', 'Cpa.g.sc13.22' => 'cpa', 'Cpa.g.sc87.88' => 'cpa', 'Cre06.g261800' => 'cre', 'CsaV3_1G014500' => 'csa', 'CsaV3_1G014510' => 'csa', 'CsaV3_2G034880' => 'csa', 'CsaV3_6G014760' => 'csa', 'CsaV3_6G021500' => 'csa', 'CsaV3_6G048980' => 'csa', 'CSS0002511' => 'camsi', 'CSS0007556' => 'camsi', 'CSS0008532' => 'camsi', 'CSS0009709' => 'camsi', 'CSS0010486' => 'camsi', 'CSS0016768' => 'camsi', 'CSS0023512' => 'camsi', 'CSS0025341' => 'camsi', 'CSS0027999' => 'camsi', 'CSS0028944' => 'camsi', 'CSS0032292' => 'camsi', 'CSS0032464' => 'camsi', 'CSS0037153' => 'camsi', 'CSS0039256' => 'camsi', 'CSS0048392' => 'camsi', 'CSS0050458' => 'camsi', 'DCAR_004224' => 'dca', 'DCAR_006147' => 'dca', 'DCAR_006465' => 'dca', 'DCAR_008159' => 'dca', 'DCAR_012164' => 'dca', 'DCAR_019764' => 'dca', 'Dinv05418' => 'din', 'Dinv10839' => 'din', 'Dinv12521' => 'din', 'Dinv13900' => 'din', 'Dinv29426' => 'din', 'Duzib150G0263' => 'dzi', 'Duzib168G1178' => 'dzi', 'Duzib168G1924' => 'dzi', 'Duzib170G0299' => 'dzi', 'Duzib170G0813' => 'dzi', 'Duzib235G1128' => 'dzi', 'Duzib248G1060' => 'dzi', 'ECA232G1910' => 'eca', 'ECA233G4621' => 'eca', 'ECA238G1216' => 'eca', 'ECA238G1784' => 'eca', 'ECA248G1242' => 'eca', 'EL10Ac8g20071' => 'bvu', 'EL10Ac9g21086' => 'bvu', 'EL10Ac9g22407' => 'bvu', 'EL10Ac9g22412' => 'bvu', 'Eucgr.A01119' => 'egr', 'Eucgr.E04043' => 'egr', 'Eucgr.J00428' => 'egr', 'Eucgr.J00958' => 'egr', 'FAN11G3091' => 'fan', 'FAN11G3651' => 'fan', 'FAN16G2566' => 'fan', 'FAN21G3155' => 'fan', 'FAN21G3400' => 'fan', 'FAN21G3543' => 'fan', 'FAN25G0234' => 'fan', 'FAN25G1422' => 'fan', 'FAN25G3392' => 'fan', 'FvH4_3g01940' => 'fve', 'FvH4_3g29870' => 'fve', 'FvH4_3g33680' => 'fve', 'Glyma.09G004200' => 'gma', 'Glyma.11G151288' => 'gma', 'Glyma.11G189100' => 'gma', 'Glyma.12G072500' => 'gma', 'Glyma.12G085500' => 'gma', 'Glyma.12G181800' => 'gma', 'Glyma.12G193000' => 'gma', 'Glyma.13G309300' => 'gma', 'Glyma.13G319000' => 'gma', 'Glyma.17G012600' => 'gma', 'Gohir.A06G148600' => 'ghi', 'Gohir.A07G115800' => 'ghi', 'Gohir.A08G003600' => 'ghi', 'Gohir.A09G093300' => 'ghi', 'Gohir.A09G105400' => 'ghi', 'Gohir.A09G105500' => 'ghi', 'Gohir.D06G154600' => 'ghi', 'Gohir.D07G120200' => 'ghi', 'Gohir.D08G013900' => 'ghi', 'Gohir.D09G093100' => 'ghi', 'Gohir.D09G102200' => 'ghi', 'Gohir.D09G102300' => 'ghi', 'Gorai.001G129400' => 'gra', 'Gorai.004G008200' => 'gra', 'Gorai.006G109800' => 'gra', 'Gorai.006G119500' => 'gra', 'Gorai.006G121300' => 'gra', 'Gorai.010G180700' => 'gra', 'GSVIVG01012716001' => 'vvi', 'GSVIVG01025118001' => 'vvi', 'GSVIVG01030439001' => 'vvi', 'GSVIVG01031397001' => 'vvi', 'HanXRQChr01g0004201' => 'han', 'HanXRQChr02g0054941' => 'han', 'HanXRQChr05g0141811' => 'han', 'HanXRQChr07g0197751' => 'han', 'HanXRQChr11g0346691' => 'han', 'HanXRQChr13g0396971' => 'han', 'HanXRQChr14g0432951' => 'han', 'HanXRQChr14g0452001' => 'han', 'HanXRQChr15g0496681' => 'han', 'HanXRQChr17g0557491' => 'han', 'HanXRQChr17g0557501' => 'han', 'Haze_06809' => 'cav', 'Haze_12852' => 'cav', 'Haze_15850' => 'cav', 'Haze_23446' => 'cav', 'Haze_23942' => 'cav', 'Haze_23943' => 'cav', 'Hma1.2p1_0091F.1_g046450' => 'hma', 'Hma1.2p1_0128F.1_g059910' => 'hma', 'Hma1.2p1_0249F.1_g102260' => 'hma', 'Hma1.2p1_0453F.1_g156190' => 'hma', 'Hma1.2p1_0695F.1_g204380' => 'hma', 'Hma1.2p1_0749F.1_g212650' => 'hma', 'Hma1.2p1_2156F.1_g315420' => 'hma', 'Hma1.2p1_2686F.1_g326940' => 'hma', 'HPP92_006428' => 'vpl', 'HPP92_012069' => 'vpl', 'HPP92_014129' => 'vpl', 'HPP92_014133' => 'vpl', 'HPP92_017315' => 'vpl', 'HPP92_026445' => 'vpl', 'HPP92_026446' => 'vpl', 'Hund00774' => 'sun', 'Hund07682' => 'sun', 'Hund21413' => 'sun', 'Hund23462' => 'sun', 'Hund23463' => 'sun', 'Lalb_Chr03g0027911' => 'lal', 'Lalb_Chr13g0304271' => 'lal', 'Lalb_Chr19g0137471' => 'lal', 'Lalb_Chr22g0350651' => 'lal', 'Lalb_Chr24g0395151' => 'lal', 'Lj1A1231T40' => 'lonja', 'Lj1A221T48' => 'lonja', 'Lj1C924T12' => 'lonja', 'Lj2C993G6' => 'lonja', 'Lj3g0005790' => 'lja', 'Lj3g0015432' => 'lja', 'Lj3g0017722' => 'lja', 'Lj3g0018497' => 'lja', 'Lj4g0025071' => 'lja', 'Lsat_1_v5_gn_1_129680' => 'lsa', 'Lsat_1_v5_gn_2_25321' => 'lsa', 'Lsat_1_v5_gn_2_95461' => 'lsa', 'Lsat_1_v5_gn_4_159620' => 'lsa', 'Lsat_1_v5_gn_6_41301' => 'lsa', 'Lsat_1_v5_gn_6_74660' => 'lsa', 'Lsat_1_v5_gn_7_11520' => 'lsa', 'Lsat_1_v5_gn_9_67680' => 'lsa', 'Manes.04G008300' => 'mes', 'Manes.04G008400' => 'mes', 'Manes.04G026500' => 'mes', 'Manes.10G135300' => 'mes', 'Manes.11G157300' => 'mes', 'Manes.12G074000' => 'mes', 'Manes.16G006200' => 'mes', 'Manes.17G026400' => 'mes', 'Mapoly0024s0086' => 'mpo', 'Mapoly0024s0087' => 'mpo', 'Mapoly0071s0057' => 'mpo', 'Mapoly0204s0012' => 'mpo', 'MBI04_g37681_MAGBIO' => 'mbi', 'MBI05_g17779_MAGBIO' => 'mbi', 'MBI12_g31184_MAGBIO' => 'mbi', 'MBI17_g11083_MAGBIO' => 'mbi', 'MBI18_g03883_MAGBIO' => 'mbi', 'MBI18_g28940_MAGBIO' => 'mbi', 'MCO01G690' => 'mco', 'MD03G1109900' => 'mdo', 'MD03G1134800' => 'mdo', 'MD05G1348000' => 'mdo', 'MD10G1322400' => 'mdo', 'MD11G1123300' => 'mdo', 'MD11G1157600' => 'mdo', 'Medtr2g084875' => 'mtr', 'Medtr2g088130' => 'mtr', 'Medtr4g055310' => 'mtr', 'Medtr4g061070' => 'mtr', 'Medtr4g132250' => 'mtr', 'MELO3C004795.2' => 'cme', 'MELO3C004797.2' => 'cme', 'MELO3C007396.2' => 'cme', 'MELO3C019277.2' => 'cme', 'MELO3C021449.2' => 'cme', 'MELO3C025736.2' => 'cme', 'Migut.D02175' => 'egut', 'Migut.H01573' => 'egut', 'Migut.M01327' => 'egut', 'Migut.N02513' => 'egut', 'MSTRG.14638' => 'ama', 'MSTRG.18632' => 'ama', 'MSTRG.7203' => 'ama', 'Nitab4.5_0000533g0140' => 'nta', 'Nitab4.5_0000888g0150' => 'nta', 'Nitab4.5_0001453g0040' => 'nta', 'Nitab4.5_0002827g0090' => 'nta', 'Nitab4.5_0003082g0040' => 'nta', 'Nitab4.5_0007799g0040' => 'nta', 'Nitab4.5_0008983g0010' => 'nta', 'Nitab4.5_0009017g0020' => 'nta', 'Nn1g02132' => 'nnu', 'Nn1g03492' => 'nnu', 'Nn1g03493' => 'nnu', 'Nn1g03494' => 'nnu', 'Nn1g07164' => 'nnu', 'Nn1g07291' => 'nnu', 'Nn2g10655' => 'nnu', 'Nn2g11652' => 'nnu', 'Nn2g14008' => 'nnu', 'Nn3g17476' => 'nnu', 'Nn3g17477' => 'nnu', 'Nn4g22370' => 'nnu', 'Nn4g25255' => 'nnu', 'Nn5g27755' => 'nnu', 'Nn6g34260' => 'nnu', 'Nn6g35041' => 'nnu', 'Oeu005924.1' => 'oeu', 'Oeu008383.1' => 'oeu', 'Oeu014928.1' => 'oeu', 'Oeu019889.1' => 'oeu', 'Oeu022271.1' => 'oeu', 'Oeu025271.1' => 'oeu', 'Oeu036302.1' => 'oeu', 'Oeu044100.1' => 'oeu', 'Os01g0528300' => 'osa', 'Os03g0286200' => 'osa', 'Os04g0406600' => 'osa', 'Os07g0512000' => 'osa', 'Os07g0694600' => 'osa', 'Os08g0411000' => 'osa', 'Os09g0565700' => 'osa', 'Os09g0566050' => 'osa', 'Os10g0523700' => 'osa', 'Peaxi162Scf00002g00514' => 'pax', 'Peaxi162Scf00047g01817' => 'pax', 'Peaxi162Scf00114g00001' => 'pax', 'Peaxi162Scf00147g00613' => 'pax', 'Peaxi162Scf00389g00425' => 'pax', 'PGR042G1139' => 'pgr', 'PGR042G3273' => 'pgr', 'PGR102G2180' => 'pgr', 'PGR119G0234' => 'pgr', 'PGR119G0668' => 'pgr', 'PGSC0003DMG400007122' => 'stu', 'PGSC0003DMG400016478' => 'stu', 'PGSC0003DMG400025374' => 'stu', 'PGSC0003DMG400026536' => 'stu', 'Phvul.003G079600' => 'pvu', 'Phvul.005G115600' => 'pvu', 'Phvul.005G127100' => 'pvu', 'Phvul.006G149500' => 'pvu', 'Phvul.006G149600' => 'pvu', 'Phvul.011G071800' => 'pvu', 'Phvul.011G090400' => 'pvu', 'Potri.004G013400' => 'ptr', 'Potri.004G188100' => 'ptr', 'Potri.008G195500' => 'ptr', 'Potri.009G148800' => 'ptr', 'Potri.011G004700' => 'ptr', 'Pp3c17_22810' => 'ppa', 'Pp3c18_4480' => 'ppa', 'Pp3c19_13030' => 'ppa', 'Pp3c1_33620' => 'ppa', 'Pp3c2_9380' => 'ppa', 'PRCOL_00001023' => 'pco', 'Prupe.3G216300' => 'ppe', 'Prupe.4G019500' => 'ppe', 'Prupe.6G092500' => 'ppe', 'Prupe.6G119200' => 'ppe', 'Psat0s1945g0080' => 'psa', 'Psat0s4167g0040' => 'psa', 'Psat1g185800' => 'psa', 'Psat4g006440' => 'psa', 'Psat4g006480' => 'psa', 'Psat4g168120' => 'psa', 'Psat5g255680' => 'psa', 'Psat5g261760' => 'psa', 'Psat7g222120' => 'psa', 'PSO063G7252' => 'pso', 'PSO170G4778' => 'pso', 'PSO210G2249' => 'pso', 'PSO339G2411' => 'pso', 'PSO339G2457' => 'pso', 'PSO339G2854' => 'pso', 'PSO339G4288' => 'pso', 'PSO339G4615' => 'pso', 'PSO384G2796' => 'pso', 'PSO384G2940' => 'pso', 'PSO384G4227' => 'pso', 'PSO478G1425' => 'pso', 'PSO541G3863' => 'pso', 'PSO675G0507' => 'pso', 'PSO782G0338' => 'pso', 'PSO832G0644' => 'pso', 'QL01p013664' => 'qlo', 'QL01p036598' => 'qlo', 'QL05p072984' => 'qlo', 'QL08p005768' => 'qlo', 'QL08p032743' => 'qlo', 'QL93p0073_0439' => 'qlo', 'QL93p0073_0444' => 'qlo', 'RcHm_v2.0_Chr5g0002851' => 'rch', 'RcHm_v2.0_Chr5g0055201' => 'rch', 'RcHm_v2.0_Chr5g0061191' => 'rch', 'RcHm_v2.0_Chr7g0203231' => 'rch', 'Rhsim01G0208100' => 'rsi', 'Rhsim01G0208200' => 'rsi', 'Rhsim02G0106500' => 'rsi', 'Rhsim03G0107900' => 'rsi', 'Rhsim06G0163400' => 'rsi', 'Rhsim13G0105200' => 'rsi', 'Sabra04G0006300' => 'sbr', 'Sabra04G0127000' => 'sbr', 'Sabra08G0148700' => 'sbr', 'Sabra09G0117400' => 'sbr', 'SalBow1G3326' => 'sbo', 'SalBow3G3228' => 'sbo', 'SalBow6G1634' => 'sbo', 'SalBow6G3603' => 'sbo', 'SalBow6G5266' => 'sbo', 'SalBow7G2265' => 'sbo', 'SalBow8G0850' => 'sbo', 'SalBow8G2592' => 'sbo', 'Sc05g0009240' => 'sci', 'Sc12g0002300' => 'sci', 'Sc21g0000100' => 'sci', 'Sc21g0004720' => 'sci', 'Sed0002949' => 'sed', 'Sed0004114' => 'sed', 'Sed0004306' => 'sed', 'Sed0006172' => 'sed', 'Sed0008413' => 'sed', 'Sed0013809' => 'sed', 'Sed0019556' => 'sed', 'SEGI_03570' => 'sgi', 'SEGI_07859' => 'sgi', 'SEGI_15042' => 'sgi', 'SEGI_16263' => 'sgi', 'SEGI_16552' => 'sgi', 'SEGI_24331' => 'sgi', 'SEGI_27316' => 'sgi', 'SEGI_29521' => 'sgi', 'SEGI_41342' => 'sgi', 'SGA_v2.0_scaffold27G11617' => 'sas', 'SGA_v2.0_scaffold316G48428' => 'sas', 'SGA_v2.0_scaffold49G18261' => 'sas', 'SGA_v2.0_scaffold7G03831' => 'sas', 'SGA_v2.0_scaffold93G28359' => 'sas', 'SHI02210' => 'shi', 'SHI06028' => 'shi', 'SHI06321' => 'shi', 'SMO111G0012' => 'smo', 'SMO228G0080' => 'smo', 'SMO356G0756' => 'smo', 'Solyc02g080620.3' => 'sly', 'Solyc06g074530.1' => 'sly', 'Solyc11g066890.1' => 'sly', 'Solyc11g072520.3' => 'sly', 'Sopen02g025330' => 'spe', 'Sopen06g031000' => 'spe', 'Sopen09g008240' => 'spe', 'Sopen09g025210' => 'spe', 'Sopen11g026600' => 'spe', 'Sopen11g030170' => 'spe', 'Sp1g10420' => 'spa', 'Sp3g06570' => 'spa', 'Sp4g10660' => 'spa', 'Sp5g16460' => 'spa', 'Sp6g22710' => 'spa', 'TAR365G0112' => 'tar', 'TAR369G0717' => 'tar', 'TAR374G0976' => 'tar', 'TAR623G1128' => 'tar', 'TAR626G1937' => 'tar', 'TAR627G0123' => 'tar', 'TAR628G0305' => 'tar', 'TAR636G1176' => 'tar', 'TAR636G2442' => 'tar', 'THA.LOC104800556' => 'tha', 'THA.LOC104809501' => 'tha', 'THA.LOC104815126' => 'tha', 'THA.LOC104815732' => 'tha', 'THA.LOC104823528' => 'tha', 'Thecc.02G365600' => 'tca', 'Thecc.06G222300' => 'tca', 'Thecc.09G261800' => 'tca', 'Thecc.09G291400' => 'tca', 'Thhalv10003028m.g' => 'esa', 'Thhalv10007886m.g' => 'esa', 'Thhalv10016085m.g' => 'esa', 'Thhalv10016681m.g' => 'esa', 'Thhalv10020951m.g' => 'esa', 'TPR.G15598' => 'tpr', 'TPR.G29305' => 'tpr', 'TPR.G32395' => 'tpr', 'TPR.G36998' => 'tpr', 'TPR.G4227' => 'tpr', 'TWI18G1433' => 'twi', 'TWI31G0755' => 'twi', 'TWI38G0912' => 'twi', 'TWI75G1097' => 'twi', 'TWI75G1619' => 'twi', 'TWI79G1336' => 'twi', 'unitig_0.g943' => 'ugi', 'unitig_0.g944' => 'ugi', 'unitig_22.g6646' => 'ugi', 'unitig_37.g12681' => 'ugi', 'unitig_8.g3290' => 'ugi', 'vmacro03278' => 'vma', 'vmacro12197' => 'vma', 'vmacro14478' => 'vma', 'vmacro15787' => 'vma', 'vmacro15789' => 'vma', 'vmacro15790' => 'vma', 'vmacro15806' => 'vma', 'vmacro22907' => 'vma', 'vmacro22908' => 'vma', 'vmacro22909' => 'vma', 'vmacro23108' => 'vma', 'VMungo0540G0540' => 'vmu', 'VMungo0540G2468' => 'vmu', 'VMungo1080G0390' => 'vmu', 'VMungo1080G1165' => 'vmu', 'VMungo1127G0170' => 'vmu', 'VMungo1127G2099' => 'vmu', 'VMungo1215G3013' => 'vmu', 'Zm00001eb013110' => 'zma', 'Zm00001eb084260' => 'zma', 'Zm00001eb096110' => 'zma', 'Zm00001eb217510' => 'zma', 'Zm00001eb322550' => 'zma', 'Zm00001eb390770' => 'zma', 'Zm00001eb397170' => 'zma', 'Zm00001eb404610' => 'zma', 'Zm00001eb421790' => 'zma' ) $gf_id = 'HOM05D000911' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000911' ) $data_identifier = 'HOM05D000911' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 16, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 5, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 6, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 8, 'nnu' => (int) 16, 'oeu' => (int) 8, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 5, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 16, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421790' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000911', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27780' => 'bna', 'A03p35380' => 'bna', 'A04p21160' => 'bna', 'A05p40570' => 'bna', 'A06p26900' => 'bna', 'A08p33230' => 'bna', 'A09p65960' => 'bna', 'A10p18290' => 'bna', 'Aa31LG1G12990' => 'aar', 'Aa31LG1G2980' => 'aar', 'Aa31LG4G14320' => 'aar', 'Aa31LG7G11800' => 'aar', 'Aa31sc36G50' => 'aar', 'Aa31sc36G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3721' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5459' => 'aag', 'Actinidia03028' => 'ach', 'Actinidia03753' => 'ach', 'Actinidia04187' => 'ach', 'Actinidia05509' => 'ach', 'Actinidia24180' => 'ach', 'Actinidia26906' => 'ach', 'Actinidia37097' => 'ach', 'Actinidia38249' => 'ach', 'Ah.01g003470' => 'amhyb', 'Ah.01g004580' => 'amhyb', 'Ah.01g014850' => 'amhyb', 'Ah.01g016830' => 'amhyb', 'Ah.14g088000' => 'amhyb', 'AL1G22980' => 'aly', 'AL3G18990' => 'aly', 'AL4G22440' => 'aly', 'AL4G33180' => 'aly', 'AL5G22920' => 'aly', 'AL6G33660' => 'aly', 'AL8G20720' => 'aly', 'Aqoxy1G00935' => 'aox', 'Aqoxy1G02094' => 'aox', 'Aqoxy2G01239' => 'aox', 'Aqoxy4G01870' => 'aox', 'Aqoxy7G00450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.36ZVTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71EM27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5D6C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH3WRE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3NCM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RIM768' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YB5YRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z36GDV' => 'arhy', 'AT1G08250' => 'ath', 'AT1G11790' => 'ath', 'AT2G27820' => 'ath', 'AT3G07630' => 'ath', 'AT3G44720' => 'ath', 'AT5G22630' => 'ath', 'ATR0693G304' => 'atr', 'ATR0794G109' => 'atr', 'ATR0820G120' => 'atr', 'ATR1159G064' => 'atr', 'Atru.chr10.2239' => 'acertr', 'Atru.chr3.3371' => 'acertr', 'Atru.chr6.3202' => 'acertr', 'AUR62006499' => 'cqu', 'AUR62012718' => 'cqu', 'AUR62021938' => 'cqu', 'AUR62023932' => 'cqu', 'AUR62025034' => 'cqu', 'AUR62025035' => 'cqu', 'AUR62038307' => 'cqu', 'AUR62043466' => 'cqu', 'BcaB02g10748' => 'bca', 'BcaB03g13231' => 'bca', 'BcaB03g14689' => 'bca', 'BcaB05g22716' => 'bca', 'BcaB06g28172' => 'bca', 'BcaB08g36413' => 'bca', 'BcaC01g02186' => 'bca', 'BcaC01g04272' => 'bca', 'BcaC02g08080' => 'bca', 'BcaC02g08227' => 'bca', 'BcaC03g13901' => 'bca', 'BcaC04g19593' => 'bca', 'BcaC04g20874' => 'bca', 'BcaC05g29557' => 'bca', 'BcaC06g35505' => 'bca', 'BcaC07g41954' => 'bca', 'BcaC07g41955' => 'bca', 'BcaC07g41956' => 'bca', 'BcaC07g42519' => 'bca', 'BcaC07g42520' => 'bca', 'BcaC07g42523' => 'bca', 'BcaC07g42524' => 'bca', 'BcaC07g42525' => 'bca', 'BcaC08g47480' => 'bca', 'BcaC08g47481' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00530' => 'bna', 'BolC2t07178H' => 'bol', 'BolC3t16567H' => 'bol', 'BolC4t27234H' => 'bol', 'BolC5t29728H' => 'bol', 'BolC5t34622H' => 'bol', 'BolC6t40321H' => 'bol', 'BolC7t42028H' => 'bol', 'BolC8t49125H' => 'bol', 'BolC8t52538H' => 'bol', 'BolC8t52539H' => 'bol', 'BolC9t56681H' => 'bol', 'BolC9t58266H' => 'bol', 'BolSC21t60294H' => 'bol', 'BraA02t05670Z' => 'bra', 'BraA03t12716Z' => 'bra', 'BraA04t17685Z' => 'bra', 'BraA05t22788Z' => 'bra', 'BraA06t24032Z' => 'bra', 'BraA06t25625Z' => 'bra', 'BraA07t27930Z' => 'bra', 'BraA08t35242Z' => 'bra', 'BraA09t38609Z' => 'bra', 'BraA10t43905Z' => 'bra', 'C02p11060' => 'bna', 'C03p42990' => 'bna', 'C03p67310' => 'bna', 'C04p56990' => 'bna', 'C04p58660' => 'bna', 'C05p09890' => 'bna', 'C05p59680' => 'bna', 'C06p19830' => 'bna', 'C06p53040' => 'bna', 'C07p15230' => 'bna', 'C08p50070' => 'bna', 'C08p50090' => 'bna', 'C09p38330' => 'bna', 'C09p53940' => 'bna', 'CAN.G1014.1' => 'can', 'CAN.G644.30' => 'can', 'CAN.G84.47' => 'can', 'CAN.G919.8' => 'can', 'CANSAT54G0113' => 'cansat', 'CANSAT54G1286' => 'cansat', 'CANSAT64G1020' => 'cansat', 'CARHR008080' => 'chi', 'CARHR008090' => 'chi', 'CARHR012130' => 'chi', 'CARHR038390' => 'chi', 'CARHR082330' => 'chi', 'CARHR120520' => 'chi', 'CARHR151470' => 'chi', 'CARHR190950' => 'chi', 'Carub.0001s0760' => 'cru', 'Carub.0001s1146' => 'cru', 'Carub.0003s0721' => 'cru', 'Carub.0004s0858' => 'cru', 'Carub.0005s1040' => 'cru', 'Carub.0006s2035' => 'cru', 'Carub.0015s0005' => 'cru', 'Ca_01607_v3' => 'car', 'Ca_01677_v3' => 'car', 'Ca_06087_v3' => 'car', 'Ca_19238_v3' => 'car', 'Ca_19373_v3' => 'car', 'Ca_21079_v3' => 'car', 'CBR_g54016' => 'cbr', 'CBR_g54018' => 'cbr', 'CBR_g54020' => 'cbr', 'Cc01_g09780' => 'ccan', 'Cc01_g11680' => 'ccan', 'Cc02_g15610' => 'ccan', 'Cc05_g04350' => 'ccan', 'Cc09_g01580' => 'ccan', 'CDE01G0795' => 'cde', 'CDE02G2024' => 'cde', 'CDE02G2260' => 'cde', 'CDE02G4561' => 'cde', 'CDE05G2733' => 'cde', 'CDE05G3422' => 'cde', 'CDE06G2003' => 'cde', 'CDE08G0576' => 'cde', 'CDE09G0048' => 'cde', 'CDE11G0805' => 'cde', 'Cfa003644' => 'cfa', 'Cfa006290' => 'cfa', 'Cfa010080' => 'cfa', 'Cfa011376' => 'cfa', 'Cfa011576' => 'cfa', 'Cfa011577' => 'cfa', 'Cfa014389' => 'cfa', 'Ciclev10006044m.g' => 'ccl', 'Ciclev10006954m.g' => 'ccl', 'Ciclev10015131m.g' => 'ccl', 'Ciclev10015580m.g' => 'ccl', 'Ciclev10028359m.g' => 'ccl', 'Ciclev10028573m.g' => 'ccl', 'CiPaw.03G159300' => 'cil', 'CiPaw.04G115100' => 'cil', 'CiPaw.09G092800' => 'cil', 'CiPaw.10G071800' => 'cil', 'CiPaw.13G105800' => 'cil', 'CiPaw.13G141000' => 'cil', 'CiPaw.14G103400' => 'cil', 'ClCG01G012700' => 'cla', 'ClCG01G012720' => 'cla', 'ClCG01G021920' => 'cla', 'ClCG02G008870' => 'cla', 'ClCG02G020840' => 'cla', 'ClCG02G021930' => 'cla', 'COL.COLO4_19302' => 'col', 'COL.COLO4_25262' => 'col', 'COL.COLO4_31788' => 'col', 'Cpa.g.c34684' => 'cpa', 'Cpa.g.c36520.1' => 'cpa', 'Cpa.g.c45626' => 'cpa', 'Cpa.g.sc121.17' => 'cpa', 'Cpa.g.sc13.22' => 'cpa', 'Cpa.g.sc87.88' => 'cpa', 'Cre06.g261800' => 'cre', 'CsaV3_1G014500' => 'csa', 'CsaV3_1G014510' => 'csa', 'CsaV3_2G034880' => 'csa', 'CsaV3_6G014760' => 'csa', 'CsaV3_6G021500' => 'csa', 'CsaV3_6G048980' => 'csa', 'CSS0002511' => 'camsi', 'CSS0007556' => 'camsi', 'CSS0008532' => 'camsi', 'CSS0009709' => 'camsi', 'CSS0010486' => 'camsi', 'CSS0016768' => 'camsi', 'CSS0023512' => 'camsi', 'CSS0025341' => 'camsi', 'CSS0027999' => 'camsi', 'CSS0028944' => 'camsi', 'CSS0032292' => 'camsi', 'CSS0032464' => 'camsi', 'CSS0037153' => 'camsi', 'CSS0039256' => 'camsi', 'CSS0048392' => 'camsi', 'CSS0050458' => 'camsi', 'DCAR_004224' => 'dca', 'DCAR_006147' => 'dca', 'DCAR_006465' => 'dca', 'DCAR_008159' => 'dca', 'DCAR_012164' => 'dca', 'DCAR_019764' => 'dca', 'Dinv05418' => 'din', 'Dinv10839' => 'din', 'Dinv12521' => 'din', 'Dinv13900' => 'din', 'Dinv29426' => 'din', 'Duzib150G0263' => 'dzi', 'Duzib168G1178' => 'dzi', 'Duzib168G1924' => 'dzi', 'Duzib170G0299' => 'dzi', 'Duzib170G0813' => 'dzi', 'Duzib235G1128' => 'dzi', 'Duzib248G1060' => 'dzi', 'ECA232G1910' => 'eca', 'ECA233G4621' => 'eca', 'ECA238G1216' => 'eca', 'ECA238G1784' => 'eca', 'ECA248G1242' => 'eca', 'EL10Ac8g20071' => 'bvu', 'EL10Ac9g21086' => 'bvu', 'EL10Ac9g22407' => 'bvu', 'EL10Ac9g22412' => 'bvu', 'Eucgr.A01119' => 'egr', 'Eucgr.E04043' => 'egr', 'Eucgr.J00428' => 'egr', 'Eucgr.J00958' => 'egr', 'FAN11G3091' => 'fan', 'FAN11G3651' => 'fan', 'FAN16G2566' => 'fan', 'FAN21G3155' => 'fan', 'FAN21G3400' => 'fan', 'FAN21G3543' => 'fan', 'FAN25G0234' => 'fan', 'FAN25G1422' => 'fan', 'FAN25G3392' => 'fan', 'FvH4_3g01940' => 'fve', 'FvH4_3g29870' => 'fve', 'FvH4_3g33680' => 'fve', 'Glyma.09G004200' => 'gma', 'Glyma.11G151288' => 'gma', 'Glyma.11G189100' => 'gma', 'Glyma.12G072500' => 'gma', 'Glyma.12G085500' => 'gma', 'Glyma.12G181800' => 'gma', 'Glyma.12G193000' => 'gma', 'Glyma.13G309300' => 'gma', 'Glyma.13G319000' => 'gma', 'Glyma.17G012600' => 'gma', 'Gohir.A06G148600' => 'ghi', 'Gohir.A07G115800' => 'ghi', 'Gohir.A08G003600' => 'ghi', 'Gohir.A09G093300' => 'ghi', 'Gohir.A09G105400' => 'ghi', 'Gohir.A09G105500' => 'ghi', 'Gohir.D06G154600' => 'ghi', 'Gohir.D07G120200' => 'ghi', 'Gohir.D08G013900' => 'ghi', 'Gohir.D09G093100' => 'ghi', 'Gohir.D09G102200' => 'ghi', 'Gohir.D09G102300' => 'ghi', 'Gorai.001G129400' => 'gra', 'Gorai.004G008200' => 'gra', 'Gorai.006G109800' => 'gra', 'Gorai.006G119500' => 'gra', 'Gorai.006G121300' => 'gra', 'Gorai.010G180700' => 'gra', 'GSVIVG01012716001' => 'vvi', 'GSVIVG01025118001' => 'vvi', 'GSVIVG01030439001' => 'vvi', 'GSVIVG01031397001' => 'vvi', 'HanXRQChr01g0004201' => 'han', 'HanXRQChr02g0054941' => 'han', 'HanXRQChr05g0141811' => 'han', 'HanXRQChr07g0197751' => 'han', 'HanXRQChr11g0346691' => 'han', 'HanXRQChr13g0396971' => 'han', 'HanXRQChr14g0432951' => 'han', 'HanXRQChr14g0452001' => 'han', 'HanXRQChr15g0496681' => 'han', 'HanXRQChr17g0557491' => 'han', 'HanXRQChr17g0557501' => 'han', 'Haze_06809' => 'cav', 'Haze_12852' => 'cav', 'Haze_15850' => 'cav', 'Haze_23446' => 'cav', 'Haze_23942' => 'cav', 'Haze_23943' => 'cav', 'Hma1.2p1_0091F.1_g046450' => 'hma', 'Hma1.2p1_0128F.1_g059910' => 'hma', 'Hma1.2p1_0249F.1_g102260' => 'hma', 'Hma1.2p1_0453F.1_g156190' => 'hma', 'Hma1.2p1_0695F.1_g204380' => 'hma', 'Hma1.2p1_0749F.1_g212650' => 'hma', 'Hma1.2p1_2156F.1_g315420' => 'hma', 'Hma1.2p1_2686F.1_g326940' => 'hma', 'HPP92_006428' => 'vpl', 'HPP92_012069' => 'vpl', 'HPP92_014129' => 'vpl', 'HPP92_014133' => 'vpl', 'HPP92_017315' => 'vpl', 'HPP92_026445' => 'vpl', 'HPP92_026446' => 'vpl', 'Hund00774' => 'sun', 'Hund07682' => 'sun', 'Hund21413' => 'sun', 'Hund23462' => 'sun', 'Hund23463' => 'sun', 'Lalb_Chr03g0027911' => 'lal', 'Lalb_Chr13g0304271' => 'lal', 'Lalb_Chr19g0137471' => 'lal', 'Lalb_Chr22g0350651' => 'lal', 'Lalb_Chr24g0395151' => 'lal', 'Lj1A1231T40' => 'lonja', 'Lj1A221T48' => 'lonja', 'Lj1C924T12' => 'lonja', 'Lj2C993G6' => 'lonja', 'Lj3g0005790' => 'lja', 'Lj3g0015432' => 'lja', 'Lj3g0017722' => 'lja', 'Lj3g0018497' => 'lja', 'Lj4g0025071' => 'lja', 'Lsat_1_v5_gn_1_129680' => 'lsa', 'Lsat_1_v5_gn_2_25321' => 'lsa', 'Lsat_1_v5_gn_2_95461' => 'lsa', 'Lsat_1_v5_gn_4_159620' => 'lsa', 'Lsat_1_v5_gn_6_41301' => 'lsa', 'Lsat_1_v5_gn_6_74660' => 'lsa', 'Lsat_1_v5_gn_7_11520' => 'lsa', 'Lsat_1_v5_gn_9_67680' => 'lsa', 'Manes.04G008300' => 'mes', 'Manes.04G008400' => 'mes', 'Manes.04G026500' => 'mes', 'Manes.10G135300' => 'mes', 'Manes.11G157300' => 'mes', 'Manes.12G074000' => 'mes', 'Manes.16G006200' => 'mes', 'Manes.17G026400' => 'mes', 'Mapoly0024s0086' => 'mpo', 'Mapoly0024s0087' => 'mpo', 'Mapoly0071s0057' => 'mpo', 'Mapoly0204s0012' => 'mpo', 'MBI04_g37681_MAGBIO' => 'mbi', 'MBI05_g17779_MAGBIO' => 'mbi', 'MBI12_g31184_MAGBIO' => 'mbi', 'MBI17_g11083_MAGBIO' => 'mbi', 'MBI18_g03883_MAGBIO' => 'mbi', 'MBI18_g28940_MAGBIO' => 'mbi', 'MCO01G690' => 'mco', 'MD03G1109900' => 'mdo', 'MD03G1134800' => 'mdo', 'MD05G1348000' => 'mdo', 'MD10G1322400' => 'mdo', 'MD11G1123300' => 'mdo', 'MD11G1157600' => 'mdo', 'Medtr2g084875' => 'mtr', 'Medtr2g088130' => 'mtr', 'Medtr4g055310' => 'mtr', 'Medtr4g061070' => 'mtr', 'Medtr4g132250' => 'mtr', 'MELO3C004795.2' => 'cme', 'MELO3C004797.2' => 'cme', 'MELO3C007396.2' => 'cme', 'MELO3C019277.2' => 'cme', 'MELO3C021449.2' => 'cme', 'MELO3C025736.2' => 'cme', 'Migut.D02175' => 'egut', 'Migut.H01573' => 'egut', 'Migut.M01327' => 'egut', 'Migut.N02513' => 'egut', 'MSTRG.14638' => 'ama', 'MSTRG.18632' => 'ama', 'MSTRG.7203' => 'ama', 'Nitab4.5_0000533g0140' => 'nta', 'Nitab4.5_0000888g0150' => 'nta', 'Nitab4.5_0001453g0040' => 'nta', 'Nitab4.5_0002827g0090' => 'nta', 'Nitab4.5_0003082g0040' => 'nta', 'Nitab4.5_0007799g0040' => 'nta', 'Nitab4.5_0008983g0010' => 'nta', 'Nitab4.5_0009017g0020' => 'nta', 'Nn1g02132' => 'nnu', 'Nn1g03492' => 'nnu', 'Nn1g03493' => 'nnu', 'Nn1g03494' => 'nnu', 'Nn1g07164' => 'nnu', 'Nn1g07291' => 'nnu', 'Nn2g10655' => 'nnu', 'Nn2g11652' => 'nnu', 'Nn2g14008' => 'nnu', 'Nn3g17476' => 'nnu', 'Nn3g17477' => 'nnu', 'Nn4g22370' => 'nnu', 'Nn4g25255' => 'nnu', 'Nn5g27755' => 'nnu', 'Nn6g34260' => 'nnu', 'Nn6g35041' => 'nnu', 'Oeu005924.1' => 'oeu', 'Oeu008383.1' => 'oeu', 'Oeu014928.1' => 'oeu', 'Oeu019889.1' => 'oeu', 'Oeu022271.1' => 'oeu', 'Oeu025271.1' => 'oeu', 'Oeu036302.1' => 'oeu', 'Oeu044100.1' => 'oeu', 'Os01g0528300' => 'osa', 'Os03g0286200' => 'osa', 'Os04g0406600' => 'osa', 'Os07g0512000' => 'osa', 'Os07g0694600' => 'osa', 'Os08g0411000' => 'osa', 'Os09g0565700' => 'osa', 'Os09g0566050' => 'osa', 'Os10g0523700' => 'osa', 'Peaxi162Scf00002g00514' => 'pax', 'Peaxi162Scf00047g01817' => 'pax', 'Peaxi162Scf00114g00001' => 'pax', 'Peaxi162Scf00147g00613' => 'pax', 'Peaxi162Scf00389g00425' => 'pax', 'PGR042G1139' => 'pgr', 'PGR042G3273' => 'pgr', 'PGR102G2180' => 'pgr', 'PGR119G0234' => 'pgr', 'PGR119G0668' => 'pgr', 'PGSC0003DMG400007122' => 'stu', 'PGSC0003DMG400016478' => 'stu', 'PGSC0003DMG400025374' => 'stu', 'PGSC0003DMG400026536' => 'stu', 'Phvul.003G079600' => 'pvu', 'Phvul.005G115600' => 'pvu', 'Phvul.005G127100' => 'pvu', 'Phvul.006G149500' => 'pvu', 'Phvul.006G149600' => 'pvu', 'Phvul.011G071800' => 'pvu', 'Phvul.011G090400' => 'pvu', 'Potri.004G013400' => 'ptr', 'Potri.004G188100' => 'ptr', 'Potri.008G195500' => 'ptr', 'Potri.009G148800' => 'ptr', 'Potri.011G004700' => 'ptr', 'Pp3c17_22810' => 'ppa', 'Pp3c18_4480' => 'ppa', 'Pp3c19_13030' => 'ppa', 'Pp3c1_33620' => 'ppa', 'Pp3c2_9380' => 'ppa', 'PRCOL_00001023' => 'pco', 'Prupe.3G216300' => 'ppe', 'Prupe.4G019500' => 'ppe', 'Prupe.6G092500' => 'ppe', 'Prupe.6G119200' => 'ppe', 'Psat0s1945g0080' => 'psa', 'Psat0s4167g0040' => 'psa', 'Psat1g185800' => 'psa', 'Psat4g006440' => 'psa', 'Psat4g006480' => 'psa', 'Psat4g168120' => 'psa', 'Psat5g255680' => 'psa', 'Psat5g261760' => 'psa', 'Psat7g222120' => 'psa', 'PSO063G7252' => 'pso', 'PSO170G4778' => 'pso', 'PSO210G2249' => 'pso', 'PSO339G2411' => 'pso', 'PSO339G2457' => 'pso', 'PSO339G2854' => 'pso', 'PSO339G4288' => 'pso', 'PSO339G4615' => 'pso', 'PSO384G2796' => 'pso', 'PSO384G2940' => 'pso', 'PSO384G4227' => 'pso', 'PSO478G1425' => 'pso', 'PSO541G3863' => 'pso', 'PSO675G0507' => 'pso', 'PSO782G0338' => 'pso', 'PSO832G0644' => 'pso', 'QL01p013664' => 'qlo', 'QL01p036598' => 'qlo', 'QL05p072984' => 'qlo', 'QL08p005768' => 'qlo', 'QL08p032743' => 'qlo', 'QL93p0073_0439' => 'qlo', 'QL93p0073_0444' => 'qlo', 'RcHm_v2.0_Chr5g0002851' => 'rch', 'RcHm_v2.0_Chr5g0055201' => 'rch', 'RcHm_v2.0_Chr5g0061191' => 'rch', 'RcHm_v2.0_Chr7g0203231' => 'rch', 'Rhsim01G0208100' => 'rsi', 'Rhsim01G0208200' => 'rsi', 'Rhsim02G0106500' => 'rsi', 'Rhsim03G0107900' => 'rsi', 'Rhsim06G0163400' => 'rsi', 'Rhsim13G0105200' => 'rsi', 'Sabra04G0006300' => 'sbr', 'Sabra04G0127000' => 'sbr', 'Sabra08G0148700' => 'sbr', 'Sabra09G0117400' => 'sbr', 'SalBow1G3326' => 'sbo', 'SalBow3G3228' => 'sbo', 'SalBow6G1634' => 'sbo', 'SalBow6G3603' => 'sbo', 'SalBow6G5266' => 'sbo', 'SalBow7G2265' => 'sbo', 'SalBow8G0850' => 'sbo', 'SalBow8G2592' => 'sbo', 'Sc05g0009240' => 'sci', 'Sc12g0002300' => 'sci', 'Sc21g0000100' => 'sci', 'Sc21g0004720' => 'sci', 'Sed0002949' => 'sed', 'Sed0004114' => 'sed', 'Sed0004306' => 'sed', 'Sed0006172' => 'sed', 'Sed0008413' => 'sed', 'Sed0013809' => 'sed', 'Sed0019556' => 'sed', 'SEGI_03570' => 'sgi', 'SEGI_07859' => 'sgi', 'SEGI_15042' => 'sgi', 'SEGI_16263' => 'sgi', 'SEGI_16552' => 'sgi', 'SEGI_24331' => 'sgi', 'SEGI_27316' => 'sgi', 'SEGI_29521' => 'sgi', 'SEGI_41342' => 'sgi', 'SGA_v2.0_scaffold27G11617' => 'sas', 'SGA_v2.0_scaffold316G48428' => 'sas', 'SGA_v2.0_scaffold49G18261' => 'sas', 'SGA_v2.0_scaffold7G03831' => 'sas', 'SGA_v2.0_scaffold93G28359' => 'sas', 'SHI02210' => 'shi', 'SHI06028' => 'shi', 'SHI06321' => 'shi', 'SMO111G0012' => 'smo', 'SMO228G0080' => 'smo', 'SMO356G0756' => 'smo', 'Solyc02g080620.3' => 'sly', 'Solyc06g074530.1' => 'sly', 'Solyc11g066890.1' => 'sly', 'Solyc11g072520.3' => 'sly', 'Sopen02g025330' => 'spe', 'Sopen06g031000' => 'spe', 'Sopen09g008240' => 'spe', 'Sopen09g025210' => 'spe', 'Sopen11g026600' => 'spe', 'Sopen11g030170' => 'spe', 'Sp1g10420' => 'spa', 'Sp3g06570' => 'spa', 'Sp4g10660' => 'spa', 'Sp5g16460' => 'spa', 'Sp6g22710' => 'spa', 'TAR365G0112' => 'tar', 'TAR369G0717' => 'tar', 'TAR374G0976' => 'tar', 'TAR623G1128' => 'tar', 'TAR626G1937' => 'tar', 'TAR627G0123' => 'tar', 'TAR628G0305' => 'tar', 'TAR636G1176' => 'tar', 'TAR636G2442' => 'tar', 'THA.LOC104800556' => 'tha', 'THA.LOC104809501' => 'tha', 'THA.LOC104815126' => 'tha', 'THA.LOC104815732' => 'tha', 'THA.LOC104823528' => 'tha', 'Thecc.02G365600' => 'tca', 'Thecc.06G222300' => 'tca', 'Thecc.09G261800' => 'tca', 'Thecc.09G291400' => 'tca', 'Thhalv10003028m.g' => 'esa', 'Thhalv10007886m.g' => 'esa', 'Thhalv10016085m.g' => 'esa', 'Thhalv10016681m.g' => 'esa', 'Thhalv10020951m.g' => 'esa', 'TPR.G15598' => 'tpr', 'TPR.G29305' => 'tpr', 'TPR.G32395' => 'tpr', 'TPR.G36998' => 'tpr', 'TPR.G4227' => 'tpr', 'TWI18G1433' => 'twi', 'TWI31G0755' => 'twi', 'TWI38G0912' => 'twi', 'TWI75G1097' => 'twi', 'TWI75G1619' => 'twi', 'TWI79G1336' => 'twi', 'unitig_0.g943' => 'ugi', 'unitig_0.g944' => 'ugi', 'unitig_22.g6646' => 'ugi', 'unitig_37.g12681' => 'ugi', 'unitig_8.g3290' => 'ugi', 'vmacro03278' => 'vma', 'vmacro12197' => 'vma', 'vmacro14478' => 'vma', 'vmacro15787' => 'vma', 'vmacro15789' => 'vma', 'vmacro15790' => 'vma', 'vmacro15806' => 'vma', 'vmacro22907' => 'vma', 'vmacro22908' => 'vma', 'vmacro22909' => 'vma', 'vmacro23108' => 'vma', 'VMungo0540G0540' => 'vmu', 'VMungo0540G2468' => 'vmu', 'VMungo1080G0390' => 'vmu', 'VMungo1080G1165' => 'vmu', 'VMungo1127G0170' => 'vmu', 'VMungo1127G2099' => 'vmu', 'VMungo1215G3013' => 'vmu', 'Zm00001eb013110' => 'zma', 'Zm00001eb084260' => 'zma', 'Zm00001eb096110' => 'zma', 'Zm00001eb217510' => 'zma', 'Zm00001eb322550' => 'zma', 'Zm00001eb390770' => 'zma', 'Zm00001eb397170' => 'zma', 'Zm00001eb404610' => 'zma', 'Zm00001eb421790' => 'zma' ), 'gf_id' => 'HOM05D000911', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000911' ), 'data_identifier' => 'HOM05D000911', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000911', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27780' => 'bna', 'A03p35380' => 'bna', 'A04p21160' => 'bna', 'A05p40570' => 'bna', 'A06p26900' => 'bna', 'A08p33230' => 'bna', 'A09p65960' => 'bna', 'A10p18290' => 'bna', 'Aa31LG1G12990' => 'aar', 'Aa31LG1G2980' => 'aar', 'Aa31LG4G14320' => 'aar', 'Aa31LG7G11800' => 'aar', 'Aa31sc36G50' => 'aar', 'Aa31sc36G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3721' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5459' => 'aag', 'Actinidia03028' => 'ach', 'Actinidia03753' => 'ach', 'Actinidia04187' => 'ach', 'Actinidia05509' => 'ach', 'Actinidia24180' => 'ach', 'Actinidia26906' => 'ach', 'Actinidia37097' => 'ach', 'Actinidia38249' => 'ach', 'Ah.01g003470' => 'amhyb', 'Ah.01g004580' => 'amhyb', 'Ah.01g014850' => 'amhyb', 'Ah.01g016830' => 'amhyb', 'Ah.14g088000' => 'amhyb', 'AL1G22980' => 'aly', 'AL3G18990' => 'aly', 'AL4G22440' => 'aly', 'AL4G33180' => 'aly', 'AL5G22920' => 'aly', 'AL6G33660' => 'aly', 'AL8G20720' => 'aly', 'Aqoxy1G00935' => 'aox', 'Aqoxy1G02094' => 'aox', 'Aqoxy2G01239' => 'aox', 'Aqoxy4G01870' => 'aox', 'Aqoxy7G00450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.36ZVTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71EM27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5D6C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH3WRE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3NCM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RIM768' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YB5YRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z36GDV' => 'arhy', 'AT1G08250' => 'ath', 'AT1G11790' => 'ath', 'AT2G27820' => 'ath', 'AT3G07630' => 'ath', 'AT3G44720' => 'ath', 'AT5G22630' => 'ath', 'ATR0693G304' => 'atr', 'ATR0794G109' => 'atr', 'ATR0820G120' => 'atr', 'ATR1159G064' => 'atr', 'Atru.chr10.2239' => 'acertr', 'Atru.chr3.3371' => 'acertr', 'Atru.chr6.3202' => 'acertr', 'AUR62006499' => 'cqu', 'AUR62012718' => 'cqu', 'AUR62021938' => 'cqu', 'AUR62023932' => 'cqu', 'AUR62025034' => 'cqu', 'AUR62025035' => 'cqu', 'AUR62038307' => 'cqu', 'AUR62043466' => 'cqu', 'BcaB02g10748' => 'bca', 'BcaB03g13231' => 'bca', 'BcaB03g14689' => 'bca', 'BcaB05g22716' => 'bca', 'BcaB06g28172' => 'bca', 'BcaB08g36413' => 'bca', 'BcaC01g02186' => 'bca', 'BcaC01g04272' => 'bca', 'BcaC02g08080' => 'bca', 'BcaC02g08227' => 'bca', 'BcaC03g13901' => 'bca', 'BcaC04g19593' => 'bca', 'BcaC04g20874' => 'bca', 'BcaC05g29557' => 'bca', 'BcaC06g35505' => 'bca', 'BcaC07g41954' => 'bca', 'BcaC07g41955' => 'bca', 'BcaC07g41956' => 'bca', 'BcaC07g42519' => 'bca', 'BcaC07g42520' => 'bca', 'BcaC07g42523' => 'bca', 'BcaC07g42524' => 'bca', 'BcaC07g42525' => 'bca', 'BcaC08g47480' => 'bca', 'BcaC08g47481' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00530' => 'bna', 'BolC2t07178H' => 'bol', 'BolC3t16567H' => 'bol', 'BolC4t27234H' => 'bol', 'BolC5t29728H' => 'bol', 'BolC5t34622H' => 'bol', 'BolC6t40321H' => 'bol', 'BolC7t42028H' => 'bol', 'BolC8t49125H' => 'bol', 'BolC8t52538H' => 'bol', 'BolC8t52539H' => 'bol', 'BolC9t56681H' => 'bol', 'BolC9t58266H' => 'bol', 'BolSC21t60294H' => 'bol', 'BraA02t05670Z' => 'bra', 'BraA03t12716Z' => 'bra', 'BraA04t17685Z' => 'bra', 'BraA05t22788Z' => 'bra', 'BraA06t24032Z' => 'bra', 'BraA06t25625Z' => 'bra', 'BraA07t27930Z' => 'bra', 'BraA08t35242Z' => 'bra', 'BraA09t38609Z' => 'bra', 'BraA10t43905Z' => 'bra', 'C02p11060' => 'bna', 'C03p42990' => 'bna', 'C03p67310' => 'bna', 'C04p56990' => 'bna', 'C04p58660' => 'bna', 'C05p09890' => 'bna', 'C05p59680' => 'bna', 'C06p19830' => 'bna', 'C06p53040' => 'bna', 'C07p15230' => 'bna', 'C08p50070' => 'bna', 'C08p50090' => 'bna', 'C09p38330' => 'bna', 'C09p53940' => 'bna', 'CAN.G1014.1' => 'can', 'CAN.G644.30' => 'can', 'CAN.G84.47' => 'can', 'CAN.G919.8' => 'can', 'CANSAT54G0113' => 'cansat', 'CANSAT54G1286' => 'cansat', 'CANSAT64G1020' => 'cansat', 'CARHR008080' => 'chi', 'CARHR008090' => 'chi', 'CARHR012130' => 'chi', 'CARHR038390' => 'chi', 'CARHR082330' => 'chi', 'CARHR120520' => 'chi', 'CARHR151470' => 'chi', 'CARHR190950' => 'chi', 'Carub.0001s0760' => 'cru', 'Carub.0001s1146' => 'cru', 'Carub.0003s0721' => 'cru', 'Carub.0004s0858' => 'cru', 'Carub.0005s1040' => 'cru', 'Carub.0006s2035' => 'cru', 'Carub.0015s0005' => 'cru', 'Ca_01607_v3' => 'car', 'Ca_01677_v3' => 'car', 'Ca_06087_v3' => 'car', 'Ca_19238_v3' => 'car', 'Ca_19373_v3' => 'car', 'Ca_21079_v3' => 'car', 'CBR_g54016' => 'cbr', 'CBR_g54018' => 'cbr', 'CBR_g54020' => 'cbr', 'Cc01_g09780' => 'ccan', 'Cc01_g11680' => 'ccan', 'Cc02_g15610' => 'ccan', 'Cc05_g04350' => 'ccan', 'Cc09_g01580' => 'ccan', 'CDE01G0795' => 'cde', 'CDE02G2024' => 'cde', 'CDE02G2260' => 'cde', 'CDE02G4561' => 'cde', 'CDE05G2733' => 'cde', 'CDE05G3422' => 'cde', 'CDE06G2003' => 'cde', 'CDE08G0576' => 'cde', 'CDE09G0048' => 'cde', 'CDE11G0805' => 'cde', 'Cfa003644' => 'cfa', 'Cfa006290' => 'cfa', 'Cfa010080' => 'cfa', 'Cfa011376' => 'cfa', 'Cfa011576' => 'cfa', 'Cfa011577' => 'cfa', 'Cfa014389' => 'cfa', 'Ciclev10006044m.g' => 'ccl', 'Ciclev10006954m.g' => 'ccl', 'Ciclev10015131m.g' => 'ccl', 'Ciclev10015580m.g' => 'ccl', 'Ciclev10028359m.g' => 'ccl', 'Ciclev10028573m.g' => 'ccl', 'CiPaw.03G159300' => 'cil', 'CiPaw.04G115100' => 'cil', 'CiPaw.09G092800' => 'cil', 'CiPaw.10G071800' => 'cil', 'CiPaw.13G105800' => 'cil', 'CiPaw.13G141000' => 'cil', 'CiPaw.14G103400' => 'cil', 'ClCG01G012700' => 'cla', 'ClCG01G012720' => 'cla', 'ClCG01G021920' => 'cla', 'ClCG02G008870' => 'cla', 'ClCG02G020840' => 'cla', 'ClCG02G021930' => 'cla', 'COL.COLO4_19302' => 'col', 'COL.COLO4_25262' => 'col', 'COL.COLO4_31788' => 'col', 'Cpa.g.c34684' => 'cpa', 'Cpa.g.c36520.1' => 'cpa', 'Cpa.g.c45626' => 'cpa', 'Cpa.g.sc121.17' => 'cpa', 'Cpa.g.sc13.22' => 'cpa', 'Cpa.g.sc87.88' => 'cpa', 'Cre06.g261800' => 'cre', 'CsaV3_1G014500' => 'csa', 'CsaV3_1G014510' => 'csa', 'CsaV3_2G034880' => 'csa', 'CsaV3_6G014760' => 'csa', 'CsaV3_6G021500' => 'csa', 'CsaV3_6G048980' => 'csa', 'CSS0002511' => 'camsi', 'CSS0007556' => 'camsi', 'CSS0008532' => 'camsi', 'CSS0009709' => 'camsi', 'CSS0010486' => 'camsi', 'CSS0016768' => 'camsi', 'CSS0023512' => 'camsi', 'CSS0025341' => 'camsi', 'CSS0027999' => 'camsi', 'CSS0028944' => 'camsi', 'CSS0032292' => 'camsi', 'CSS0032464' => 'camsi', 'CSS0037153' => 'camsi', 'CSS0039256' => 'camsi', 'CSS0048392' => 'camsi', 'CSS0050458' => 'camsi', 'DCAR_004224' => 'dca', 'DCAR_006147' => 'dca', 'DCAR_006465' => 'dca', 'DCAR_008159' => 'dca', 'DCAR_012164' => 'dca', 'DCAR_019764' => 'dca', 'Dinv05418' => 'din', 'Dinv10839' => 'din', 'Dinv12521' => 'din', 'Dinv13900' => 'din', 'Dinv29426' => 'din', 'Duzib150G0263' => 'dzi', 'Duzib168G1178' => 'dzi', 'Duzib168G1924' => 'dzi', 'Duzib170G0299' => 'dzi', 'Duzib170G0813' => 'dzi', 'Duzib235G1128' => 'dzi', 'Duzib248G1060' => 'dzi', 'ECA232G1910' => 'eca', 'ECA233G4621' => 'eca', 'ECA238G1216' => 'eca', 'ECA238G1784' => 'eca', 'ECA248G1242' => 'eca', 'EL10Ac8g20071' => 'bvu', 'EL10Ac9g21086' => 'bvu', 'EL10Ac9g22407' => 'bvu', 'EL10Ac9g22412' => 'bvu', 'Eucgr.A01119' => 'egr', 'Eucgr.E04043' => 'egr', 'Eucgr.J00428' => 'egr', 'Eucgr.J00958' => 'egr', 'FAN11G3091' => 'fan', 'FAN11G3651' => 'fan', 'FAN16G2566' => 'fan', 'FAN21G3155' => 'fan', 'FAN21G3400' => 'fan', 'FAN21G3543' => 'fan', 'FAN25G0234' => 'fan', 'FAN25G1422' => 'fan', 'FAN25G3392' => 'fan', 'FvH4_3g01940' => 'fve', 'FvH4_3g29870' => 'fve', 'FvH4_3g33680' => 'fve', 'Glyma.09G004200' => 'gma', 'Glyma.11G151288' => 'gma', 'Glyma.11G189100' => 'gma', 'Glyma.12G072500' => 'gma', 'Glyma.12G085500' => 'gma', 'Glyma.12G181800' => 'gma', 'Glyma.12G193000' => 'gma', 'Glyma.13G309300' => 'gma', 'Glyma.13G319000' => 'gma', 'Glyma.17G012600' => 'gma', 'Gohir.A06G148600' => 'ghi', 'Gohir.A07G115800' => 'ghi', 'Gohir.A08G003600' => 'ghi', 'Gohir.A09G093300' => 'ghi', 'Gohir.A09G105400' => 'ghi', 'Gohir.A09G105500' => 'ghi', 'Gohir.D06G154600' => 'ghi', 'Gohir.D07G120200' => 'ghi', 'Gohir.D08G013900' => 'ghi', 'Gohir.D09G093100' => 'ghi', 'Gohir.D09G102200' => 'ghi', 'Gohir.D09G102300' => 'ghi', 'Gorai.001G129400' => 'gra', 'Gorai.004G008200' => 'gra', 'Gorai.006G109800' => 'gra', 'Gorai.006G119500' => 'gra', 'Gorai.006G121300' => 'gra', 'Gorai.010G180700' => 'gra', 'GSVIVG01012716001' => 'vvi', 'GSVIVG01025118001' => 'vvi', 'GSVIVG01030439001' => 'vvi', 'GSVIVG01031397001' => 'vvi', 'HanXRQChr01g0004201' => 'han', 'HanXRQChr02g0054941' => 'han', 'HanXRQChr05g0141811' => 'han', 'HanXRQChr07g0197751' => 'han', 'HanXRQChr11g0346691' => 'han', 'HanXRQChr13g0396971' => 'han', 'HanXRQChr14g0432951' => 'han', 'HanXRQChr14g0452001' => 'han', 'HanXRQChr15g0496681' => 'han', 'HanXRQChr17g0557491' => 'han', 'HanXRQChr17g0557501' => 'han', 'Haze_06809' => 'cav', 'Haze_12852' => 'cav', 'Haze_15850' => 'cav', 'Haze_23446' => 'cav', 'Haze_23942' => 'cav', 'Haze_23943' => 'cav', 'Hma1.2p1_0091F.1_g046450' => 'hma', 'Hma1.2p1_0128F.1_g059910' => 'hma', 'Hma1.2p1_0249F.1_g102260' => 'hma', 'Hma1.2p1_0453F.1_g156190' => 'hma', 'Hma1.2p1_0695F.1_g204380' => 'hma', 'Hma1.2p1_0749F.1_g212650' => 'hma', 'Hma1.2p1_2156F.1_g315420' => 'hma', 'Hma1.2p1_2686F.1_g326940' => 'hma', 'HPP92_006428' => 'vpl', 'HPP92_012069' => 'vpl', 'HPP92_014129' => 'vpl', 'HPP92_014133' => 'vpl', 'HPP92_017315' => 'vpl', 'HPP92_026445' => 'vpl', 'HPP92_026446' => 'vpl', 'Hund00774' => 'sun', 'Hund07682' => 'sun', 'Hund21413' => 'sun', 'Hund23462' => 'sun', 'Hund23463' => 'sun', 'Lalb_Chr03g0027911' => 'lal', 'Lalb_Chr13g0304271' => 'lal', 'Lalb_Chr19g0137471' => 'lal', 'Lalb_Chr22g0350651' => 'lal', 'Lalb_Chr24g0395151' => 'lal', 'Lj1A1231T40' => 'lonja', 'Lj1A221T48' => 'lonja', 'Lj1C924T12' => 'lonja', 'Lj2C993G6' => 'lonja', 'Lj3g0005790' => 'lja', 'Lj3g0015432' => 'lja', 'Lj3g0017722' => 'lja', 'Lj3g0018497' => 'lja', 'Lj4g0025071' => 'lja', 'Lsat_1_v5_gn_1_129680' => 'lsa', 'Lsat_1_v5_gn_2_25321' => 'lsa', 'Lsat_1_v5_gn_2_95461' => 'lsa', 'Lsat_1_v5_gn_4_159620' => 'lsa', 'Lsat_1_v5_gn_6_41301' => 'lsa', 'Lsat_1_v5_gn_6_74660' => 'lsa', 'Lsat_1_v5_gn_7_11520' => 'lsa', 'Lsat_1_v5_gn_9_67680' => 'lsa', 'Manes.04G008300' => 'mes', 'Manes.04G008400' => 'mes', 'Manes.04G026500' => 'mes', 'Manes.10G135300' => 'mes', 'Manes.11G157300' => 'mes', 'Manes.12G074000' => 'mes', 'Manes.16G006200' => 'mes', 'Manes.17G026400' => 'mes', 'Mapoly0024s0086' => 'mpo', 'Mapoly0024s0087' => 'mpo', 'Mapoly0071s0057' => 'mpo', 'Mapoly0204s0012' => 'mpo', 'MBI04_g37681_MAGBIO' => 'mbi', 'MBI05_g17779_MAGBIO' => 'mbi', 'MBI12_g31184_MAGBIO' => 'mbi', 'MBI17_g11083_MAGBIO' => 'mbi', 'MBI18_g03883_MAGBIO' => 'mbi', 'MBI18_g28940_MAGBIO' => 'mbi', 'MCO01G690' => 'mco', 'MD03G1109900' => 'mdo', 'MD03G1134800' => 'mdo', 'MD05G1348000' => 'mdo', 'MD10G1322400' => 'mdo', 'MD11G1123300' => 'mdo', 'MD11G1157600' => 'mdo', 'Medtr2g084875' => 'mtr', 'Medtr2g088130' => 'mtr', 'Medtr4g055310' => 'mtr', 'Medtr4g061070' => 'mtr', 'Medtr4g132250' => 'mtr', 'MELO3C004795.2' => 'cme', 'MELO3C004797.2' => 'cme', 'MELO3C007396.2' => 'cme', 'MELO3C019277.2' => 'cme', 'MELO3C021449.2' => 'cme', 'MELO3C025736.2' => 'cme', 'Migut.D02175' => 'egut', 'Migut.H01573' => 'egut', 'Migut.M01327' => 'egut', 'Migut.N02513' => 'egut', 'MSTRG.14638' => 'ama', 'MSTRG.18632' => 'ama', 'MSTRG.7203' => 'ama', 'Nitab4.5_0000533g0140' => 'nta', 'Nitab4.5_0000888g0150' => 'nta', 'Nitab4.5_0001453g0040' => 'nta', 'Nitab4.5_0002827g0090' => 'nta', 'Nitab4.5_0003082g0040' => 'nta', 'Nitab4.5_0007799g0040' => 'nta', 'Nitab4.5_0008983g0010' => 'nta', 'Nitab4.5_0009017g0020' => 'nta', 'Nn1g02132' => 'nnu', 'Nn1g03492' => 'nnu', 'Nn1g03493' => 'nnu', 'Nn1g03494' => 'nnu', 'Nn1g07164' => 'nnu', 'Nn1g07291' => 'nnu', 'Nn2g10655' => 'nnu', 'Nn2g11652' => 'nnu', 'Nn2g14008' => 'nnu', 'Nn3g17476' => 'nnu', 'Nn3g17477' => 'nnu', 'Nn4g22370' => 'nnu', 'Nn4g25255' => 'nnu', 'Nn5g27755' => 'nnu', 'Nn6g34260' => 'nnu', 'Nn6g35041' => 'nnu', 'Oeu005924.1' => 'oeu', 'Oeu008383.1' => 'oeu', 'Oeu014928.1' => 'oeu', 'Oeu019889.1' => 'oeu', 'Oeu022271.1' => 'oeu', 'Oeu025271.1' => 'oeu', 'Oeu036302.1' => 'oeu', 'Oeu044100.1' => 'oeu', 'Os01g0528300' => 'osa', 'Os03g0286200' => 'osa', 'Os04g0406600' => 'osa', 'Os07g0512000' => 'osa', 'Os07g0694600' => 'osa', 'Os08g0411000' => 'osa', 'Os09g0565700' => 'osa', 'Os09g0566050' => 'osa', 'Os10g0523700' => 'osa', 'Peaxi162Scf00002g00514' => 'pax', 'Peaxi162Scf00047g01817' => 'pax', 'Peaxi162Scf00114g00001' => 'pax', 'Peaxi162Scf00147g00613' => 'pax', 'Peaxi162Scf00389g00425' => 'pax', 'PGR042G1139' => 'pgr', 'PGR042G3273' => 'pgr', 'PGR102G2180' => 'pgr', 'PGR119G0234' => 'pgr', 'PGR119G0668' => 'pgr', 'PGSC0003DMG400007122' => 'stu', 'PGSC0003DMG400016478' => 'stu', 'PGSC0003DMG400025374' => 'stu', 'PGSC0003DMG400026536' => 'stu', 'Phvul.003G079600' => 'pvu', 'Phvul.005G115600' => 'pvu', 'Phvul.005G127100' => 'pvu', 'Phvul.006G149500' => 'pvu', 'Phvul.006G149600' => 'pvu', 'Phvul.011G071800' => 'pvu', 'Phvul.011G090400' => 'pvu', 'Potri.004G013400' => 'ptr', 'Potri.004G188100' => 'ptr', 'Potri.008G195500' => 'ptr', 'Potri.009G148800' => 'ptr', 'Potri.011G004700' => 'ptr', 'Pp3c17_22810' => 'ppa', 'Pp3c18_4480' => 'ppa', 'Pp3c19_13030' => 'ppa', 'Pp3c1_33620' => 'ppa', 'Pp3c2_9380' => 'ppa', 'PRCOL_00001023' => 'pco', 'Prupe.3G216300' => 'ppe', 'Prupe.4G019500' => 'ppe', 'Prupe.6G092500' => 'ppe', 'Prupe.6G119200' => 'ppe', 'Psat0s1945g0080' => 'psa', 'Psat0s4167g0040' => 'psa', 'Psat1g185800' => 'psa', 'Psat4g006440' => 'psa', 'Psat4g006480' => 'psa', 'Psat4g168120' => 'psa', 'Psat5g255680' => 'psa', 'Psat5g261760' => 'psa', 'Psat7g222120' => 'psa', 'PSO063G7252' => 'pso', 'PSO170G4778' => 'pso', 'PSO210G2249' => 'pso', 'PSO339G2411' => 'pso', 'PSO339G2457' => 'pso', 'PSO339G2854' => 'pso', 'PSO339G4288' => 'pso', 'PSO339G4615' => 'pso', 'PSO384G2796' => 'pso', 'PSO384G2940' => 'pso', 'PSO384G4227' => 'pso', 'PSO478G1425' => 'pso', 'PSO541G3863' => 'pso', 'PSO675G0507' => 'pso', 'PSO782G0338' => 'pso', 'PSO832G0644' => 'pso', 'QL01p013664' => 'qlo', 'QL01p036598' => 'qlo', 'QL05p072984' => 'qlo', 'QL08p005768' => 'qlo', 'QL08p032743' => 'qlo', 'QL93p0073_0439' => 'qlo', 'QL93p0073_0444' => 'qlo', 'RcHm_v2.0_Chr5g0002851' => 'rch', 'RcHm_v2.0_Chr5g0055201' => 'rch', 'RcHm_v2.0_Chr5g0061191' => 'rch', 'RcHm_v2.0_Chr7g0203231' => 'rch', 'Rhsim01G0208100' => 'rsi', 'Rhsim01G0208200' => 'rsi', 'Rhsim02G0106500' => 'rsi', 'Rhsim03G0107900' => 'rsi', 'Rhsim06G0163400' => 'rsi', 'Rhsim13G0105200' => 'rsi', 'Sabra04G0006300' => 'sbr', 'Sabra04G0127000' => 'sbr', 'Sabra08G0148700' => 'sbr', 'Sabra09G0117400' => 'sbr', 'SalBow1G3326' => 'sbo', 'SalBow3G3228' => 'sbo', 'SalBow6G1634' => 'sbo', 'SalBow6G3603' => 'sbo', 'SalBow6G5266' => 'sbo', 'SalBow7G2265' => 'sbo', 'SalBow8G0850' => 'sbo', 'SalBow8G2592' => 'sbo', 'Sc05g0009240' => 'sci', 'Sc12g0002300' => 'sci', 'Sc21g0000100' => 'sci', 'Sc21g0004720' => 'sci', 'Sed0002949' => 'sed', 'Sed0004114' => 'sed', 'Sed0004306' => 'sed', 'Sed0006172' => 'sed', 'Sed0008413' => 'sed', 'Sed0013809' => 'sed', 'Sed0019556' => 'sed', 'SEGI_03570' => 'sgi', 'SEGI_07859' => 'sgi', 'SEGI_15042' => 'sgi', 'SEGI_16263' => 'sgi', 'SEGI_16552' => 'sgi', 'SEGI_24331' => 'sgi', 'SEGI_27316' => 'sgi', 'SEGI_29521' => 'sgi', 'SEGI_41342' => 'sgi', 'SGA_v2.0_scaffold27G11617' => 'sas', 'SGA_v2.0_scaffold316G48428' => 'sas', 'SGA_v2.0_scaffold49G18261' => 'sas', 'SGA_v2.0_scaffold7G03831' => 'sas', 'SGA_v2.0_scaffold93G28359' => 'sas', 'SHI02210' => 'shi', 'SHI06028' => 'shi', 'SHI06321' => 'shi', 'SMO111G0012' => 'smo', 'SMO228G0080' => 'smo', 'SMO356G0756' => 'smo', 'Solyc02g080620.3' => 'sly', 'Solyc06g074530.1' => 'sly', 'Solyc11g066890.1' => 'sly', 'Solyc11g072520.3' => 'sly', 'Sopen02g025330' => 'spe', 'Sopen06g031000' => 'spe', 'Sopen09g008240' => 'spe', 'Sopen09g025210' => 'spe', 'Sopen11g026600' => 'spe', 'Sopen11g030170' => 'spe', 'Sp1g10420' => 'spa', 'Sp3g06570' => 'spa', 'Sp4g10660' => 'spa', 'Sp5g16460' => 'spa', 'Sp6g22710' => 'spa', 'TAR365G0112' => 'tar', 'TAR369G0717' => 'tar', 'TAR374G0976' => 'tar', 'TAR623G1128' => 'tar', 'TAR626G1937' => 'tar', 'TAR627G0123' => 'tar', 'TAR628G0305' => 'tar', 'TAR636G1176' => 'tar', 'TAR636G2442' => 'tar', 'THA.LOC104800556' => 'tha', 'THA.LOC104809501' => 'tha', 'THA.LOC104815126' => 'tha', 'THA.LOC104815732' => 'tha', 'THA.LOC104823528' => 'tha', 'Thecc.02G365600' => 'tca', 'Thecc.06G222300' => 'tca', 'Thecc.09G261800' => 'tca', 'Thecc.09G291400' => 'tca', 'Thhalv10003028m.g' => 'esa', 'Thhalv10007886m.g' => 'esa', 'Thhalv10016085m.g' => 'esa', 'Thhalv10016681m.g' => 'esa', 'Thhalv10020951m.g' => 'esa', 'TPR.G15598' => 'tpr', 'TPR.G29305' => 'tpr', 'TPR.G32395' => 'tpr', 'TPR.G36998' => 'tpr', 'TPR.G4227' => 'tpr', 'TWI18G1433' => 'twi', 'TWI31G0755' => 'twi', 'TWI38G0912' => 'twi', 'TWI75G1097' => 'twi', 'TWI75G1619' => 'twi', 'TWI79G1336' => 'twi', 'unitig_0.g943' => 'ugi', 'unitig_0.g944' => 'ugi', 'unitig_22.g6646' => 'ugi', 'unitig_37.g12681' => 'ugi', 'unitig_8.g3290' => 'ugi', 'vmacro03278' => 'vma', 'vmacro12197' => 'vma', 'vmacro14478' => 'vma', 'vmacro15787' => 'vma', 'vmacro15789' => 'vma', 'vmacro15790' => 'vma', 'vmacro15806' => 'vma', 'vmacro22907' => 'vma', 'vmacro22908' => 'vma', 'vmacro22909' => 'vma', 'vmacro23108' => 'vma', 'VMungo0540G0540' => 'vmu', 'VMungo0540G2468' => 'vmu', 'VMungo1080G0390' => 'vmu', 'VMungo1080G1165' => 'vmu', 'VMungo1127G0170' => 'vmu', 'VMungo1127G2099' => 'vmu', 'VMungo1215G3013' => 'vmu', 'Zm00001eb013110' => 'zma', 'Zm00001eb084260' => 'zma', 'Zm00001eb096110' => 'zma', 'Zm00001eb217510' => 'zma', 'Zm00001eb322550' => 'zma', 'Zm00001eb390770' => 'zma', 'Zm00001eb397170' => 'zma', 'Zm00001eb404610' => 'zma', 'Zm00001eb421790' => 'zma' ) $gf_id = 'HOM05D000911' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000911' ) $data_identifier = 'HOM05D000911' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 16, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 5, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 6, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 8, 'nnu' => (int) 16, 'oeu' => (int) 8, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 5, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 16, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421790' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000911', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27780' => 'bna', 'A03p35380' => 'bna', 'A04p21160' => 'bna', 'A05p40570' => 'bna', 'A06p26900' => 'bna', 'A08p33230' => 'bna', 'A09p65960' => 'bna', 'A10p18290' => 'bna', 'Aa31LG1G12990' => 'aar', 'Aa31LG1G2980' => 'aar', 'Aa31LG4G14320' => 'aar', 'Aa31LG7G11800' => 'aar', 'Aa31sc36G50' => 'aar', 'Aa31sc36G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3721' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5459' => 'aag', 'Actinidia03028' => 'ach', 'Actinidia03753' => 'ach', 'Actinidia04187' => 'ach', 'Actinidia05509' => 'ach', 'Actinidia24180' => 'ach', 'Actinidia26906' => 'ach', 'Actinidia37097' => 'ach', 'Actinidia38249' => 'ach', 'Ah.01g003470' => 'amhyb', 'Ah.01g004580' => 'amhyb', 'Ah.01g014850' => 'amhyb', 'Ah.01g016830' => 'amhyb', 'Ah.14g088000' => 'amhyb', 'AL1G22980' => 'aly', 'AL3G18990' => 'aly', 'AL4G22440' => 'aly', 'AL4G33180' => 'aly', 'AL5G22920' => 'aly', 'AL6G33660' => 'aly', 'AL8G20720' => 'aly', 'Aqoxy1G00935' => 'aox', 'Aqoxy1G02094' => 'aox', 'Aqoxy2G01239' => 'aox', 'Aqoxy4G01870' => 'aox', 'Aqoxy7G00450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.36ZVTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71EM27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5D6C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH3WRE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3NCM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RIM768' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YB5YRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z36GDV' => 'arhy', 'AT1G08250' => 'ath', 'AT1G11790' => 'ath', 'AT2G27820' => 'ath', 'AT3G07630' => 'ath', 'AT3G44720' => 'ath', 'AT5G22630' => 'ath', 'ATR0693G304' => 'atr', 'ATR0794G109' => 'atr', 'ATR0820G120' => 'atr', 'ATR1159G064' => 'atr', 'Atru.chr10.2239' => 'acertr', 'Atru.chr3.3371' => 'acertr', 'Atru.chr6.3202' => 'acertr', 'AUR62006499' => 'cqu', 'AUR62012718' => 'cqu', 'AUR62021938' => 'cqu', 'AUR62023932' => 'cqu', 'AUR62025034' => 'cqu', 'AUR62025035' => 'cqu', 'AUR62038307' => 'cqu', 'AUR62043466' => 'cqu', 'BcaB02g10748' => 'bca', 'BcaB03g13231' => 'bca', 'BcaB03g14689' => 'bca', 'BcaB05g22716' => 'bca', 'BcaB06g28172' => 'bca', 'BcaB08g36413' => 'bca', 'BcaC01g02186' => 'bca', 'BcaC01g04272' => 'bca', 'BcaC02g08080' => 'bca', 'BcaC02g08227' => 'bca', 'BcaC03g13901' => 'bca', 'BcaC04g19593' => 'bca', 'BcaC04g20874' => 'bca', 'BcaC05g29557' => 'bca', 'BcaC06g35505' => 'bca', 'BcaC07g41954' => 'bca', 'BcaC07g41955' => 'bca', 'BcaC07g41956' => 'bca', 'BcaC07g42519' => 'bca', 'BcaC07g42520' => 'bca', 'BcaC07g42523' => 'bca', 'BcaC07g42524' => 'bca', 'BcaC07g42525' => 'bca', 'BcaC08g47480' => 'bca', 'BcaC08g47481' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00530' => 'bna', 'BolC2t07178H' => 'bol', 'BolC3t16567H' => 'bol', 'BolC4t27234H' => 'bol', 'BolC5t29728H' => 'bol', 'BolC5t34622H' => 'bol', 'BolC6t40321H' => 'bol', 'BolC7t42028H' => 'bol', 'BolC8t49125H' => 'bol', 'BolC8t52538H' => 'bol', 'BolC8t52539H' => 'bol', 'BolC9t56681H' => 'bol', 'BolC9t58266H' => 'bol', 'BolSC21t60294H' => 'bol', 'BraA02t05670Z' => 'bra', 'BraA03t12716Z' => 'bra', 'BraA04t17685Z' => 'bra', 'BraA05t22788Z' => 'bra', 'BraA06t24032Z' => 'bra', 'BraA06t25625Z' => 'bra', 'BraA07t27930Z' => 'bra', 'BraA08t35242Z' => 'bra', 'BraA09t38609Z' => 'bra', 'BraA10t43905Z' => 'bra', 'C02p11060' => 'bna', 'C03p42990' => 'bna', 'C03p67310' => 'bna', 'C04p56990' => 'bna', 'C04p58660' => 'bna', 'C05p09890' => 'bna', 'C05p59680' => 'bna', 'C06p19830' => 'bna', 'C06p53040' => 'bna', 'C07p15230' => 'bna', 'C08p50070' => 'bna', 'C08p50090' => 'bna', 'C09p38330' => 'bna', 'C09p53940' => 'bna', 'CAN.G1014.1' => 'can', 'CAN.G644.30' => 'can', 'CAN.G84.47' => 'can', 'CAN.G919.8' => 'can', 'CANSAT54G0113' => 'cansat', 'CANSAT54G1286' => 'cansat', 'CANSAT64G1020' => 'cansat', 'CARHR008080' => 'chi', 'CARHR008090' => 'chi', 'CARHR012130' => 'chi', 'CARHR038390' => 'chi', 'CARHR082330' => 'chi', 'CARHR120520' => 'chi', 'CARHR151470' => 'chi', 'CARHR190950' => 'chi', 'Carub.0001s0760' => 'cru', 'Carub.0001s1146' => 'cru', 'Carub.0003s0721' => 'cru', 'Carub.0004s0858' => 'cru', 'Carub.0005s1040' => 'cru', 'Carub.0006s2035' => 'cru', 'Carub.0015s0005' => 'cru', 'Ca_01607_v3' => 'car', 'Ca_01677_v3' => 'car', 'Ca_06087_v3' => 'car', 'Ca_19238_v3' => 'car', 'Ca_19373_v3' => 'car', 'Ca_21079_v3' => 'car', 'CBR_g54016' => 'cbr', 'CBR_g54018' => 'cbr', 'CBR_g54020' => 'cbr', 'Cc01_g09780' => 'ccan', 'Cc01_g11680' => 'ccan', 'Cc02_g15610' => 'ccan', 'Cc05_g04350' => 'ccan', 'Cc09_g01580' => 'ccan', 'CDE01G0795' => 'cde', 'CDE02G2024' => 'cde', 'CDE02G2260' => 'cde', 'CDE02G4561' => 'cde', 'CDE05G2733' => 'cde', 'CDE05G3422' => 'cde', 'CDE06G2003' => 'cde', 'CDE08G0576' => 'cde', 'CDE09G0048' => 'cde', 'CDE11G0805' => 'cde', 'Cfa003644' => 'cfa', 'Cfa006290' => 'cfa', 'Cfa010080' => 'cfa', 'Cfa011376' => 'cfa', 'Cfa011576' => 'cfa', 'Cfa011577' => 'cfa', 'Cfa014389' => 'cfa', 'Ciclev10006044m.g' => 'ccl', 'Ciclev10006954m.g' => 'ccl', 'Ciclev10015131m.g' => 'ccl', 'Ciclev10015580m.g' => 'ccl', 'Ciclev10028359m.g' => 'ccl', 'Ciclev10028573m.g' => 'ccl', 'CiPaw.03G159300' => 'cil', 'CiPaw.04G115100' => 'cil', 'CiPaw.09G092800' => 'cil', 'CiPaw.10G071800' => 'cil', 'CiPaw.13G105800' => 'cil', 'CiPaw.13G141000' => 'cil', 'CiPaw.14G103400' => 'cil', 'ClCG01G012700' => 'cla', 'ClCG01G012720' => 'cla', 'ClCG01G021920' => 'cla', 'ClCG02G008870' => 'cla', 'ClCG02G020840' => 'cla', 'ClCG02G021930' => 'cla', 'COL.COLO4_19302' => 'col', 'COL.COLO4_25262' => 'col', 'COL.COLO4_31788' => 'col', 'Cpa.g.c34684' => 'cpa', 'Cpa.g.c36520.1' => 'cpa', 'Cpa.g.c45626' => 'cpa', 'Cpa.g.sc121.17' => 'cpa', 'Cpa.g.sc13.22' => 'cpa', 'Cpa.g.sc87.88' => 'cpa', 'Cre06.g261800' => 'cre', 'CsaV3_1G014500' => 'csa', 'CsaV3_1G014510' => 'csa', 'CsaV3_2G034880' => 'csa', 'CsaV3_6G014760' => 'csa', 'CsaV3_6G021500' => 'csa', 'CsaV3_6G048980' => 'csa', 'CSS0002511' => 'camsi', 'CSS0007556' => 'camsi', 'CSS0008532' => 'camsi', 'CSS0009709' => 'camsi', 'CSS0010486' => 'camsi', 'CSS0016768' => 'camsi', 'CSS0023512' => 'camsi', 'CSS0025341' => 'camsi', 'CSS0027999' => 'camsi', 'CSS0028944' => 'camsi', 'CSS0032292' => 'camsi', 'CSS0032464' => 'camsi', 'CSS0037153' => 'camsi', 'CSS0039256' => 'camsi', 'CSS0048392' => 'camsi', 'CSS0050458' => 'camsi', 'DCAR_004224' => 'dca', 'DCAR_006147' => 'dca', 'DCAR_006465' => 'dca', 'DCAR_008159' => 'dca', 'DCAR_012164' => 'dca', 'DCAR_019764' => 'dca', 'Dinv05418' => 'din', 'Dinv10839' => 'din', 'Dinv12521' => 'din', 'Dinv13900' => 'din', 'Dinv29426' => 'din', 'Duzib150G0263' => 'dzi', 'Duzib168G1178' => 'dzi', 'Duzib168G1924' => 'dzi', 'Duzib170G0299' => 'dzi', 'Duzib170G0813' => 'dzi', 'Duzib235G1128' => 'dzi', 'Duzib248G1060' => 'dzi', 'ECA232G1910' => 'eca', 'ECA233G4621' => 'eca', 'ECA238G1216' => 'eca', 'ECA238G1784' => 'eca', 'ECA248G1242' => 'eca', 'EL10Ac8g20071' => 'bvu', 'EL10Ac9g21086' => 'bvu', 'EL10Ac9g22407' => 'bvu', 'EL10Ac9g22412' => 'bvu', 'Eucgr.A01119' => 'egr', 'Eucgr.E04043' => 'egr', 'Eucgr.J00428' => 'egr', 'Eucgr.J00958' => 'egr', 'FAN11G3091' => 'fan', 'FAN11G3651' => 'fan', 'FAN16G2566' => 'fan', 'FAN21G3155' => 'fan', 'FAN21G3400' => 'fan', 'FAN21G3543' => 'fan', 'FAN25G0234' => 'fan', 'FAN25G1422' => 'fan', 'FAN25G3392' => 'fan', 'FvH4_3g01940' => 'fve', 'FvH4_3g29870' => 'fve', 'FvH4_3g33680' => 'fve', 'Glyma.09G004200' => 'gma', 'Glyma.11G151288' => 'gma', 'Glyma.11G189100' => 'gma', 'Glyma.12G072500' => 'gma', 'Glyma.12G085500' => 'gma', 'Glyma.12G181800' => 'gma', 'Glyma.12G193000' => 'gma', 'Glyma.13G309300' => 'gma', 'Glyma.13G319000' => 'gma', 'Glyma.17G012600' => 'gma', 'Gohir.A06G148600' => 'ghi', 'Gohir.A07G115800' => 'ghi', 'Gohir.A08G003600' => 'ghi', 'Gohir.A09G093300' => 'ghi', 'Gohir.A09G105400' => 'ghi', 'Gohir.A09G105500' => 'ghi', 'Gohir.D06G154600' => 'ghi', 'Gohir.D07G120200' => 'ghi', 'Gohir.D08G013900' => 'ghi', 'Gohir.D09G093100' => 'ghi', 'Gohir.D09G102200' => 'ghi', 'Gohir.D09G102300' => 'ghi', 'Gorai.001G129400' => 'gra', 'Gorai.004G008200' => 'gra', 'Gorai.006G109800' => 'gra', 'Gorai.006G119500' => 'gra', 'Gorai.006G121300' => 'gra', 'Gorai.010G180700' => 'gra', 'GSVIVG01012716001' => 'vvi', 'GSVIVG01025118001' => 'vvi', 'GSVIVG01030439001' => 'vvi', 'GSVIVG01031397001' => 'vvi', 'HanXRQChr01g0004201' => 'han', 'HanXRQChr02g0054941' => 'han', 'HanXRQChr05g0141811' => 'han', 'HanXRQChr07g0197751' => 'han', 'HanXRQChr11g0346691' => 'han', 'HanXRQChr13g0396971' => 'han', 'HanXRQChr14g0432951' => 'han', 'HanXRQChr14g0452001' => 'han', 'HanXRQChr15g0496681' => 'han', 'HanXRQChr17g0557491' => 'han', 'HanXRQChr17g0557501' => 'han', 'Haze_06809' => 'cav', 'Haze_12852' => 'cav', 'Haze_15850' => 'cav', 'Haze_23446' => 'cav', 'Haze_23942' => 'cav', 'Haze_23943' => 'cav', 'Hma1.2p1_0091F.1_g046450' => 'hma', 'Hma1.2p1_0128F.1_g059910' => 'hma', 'Hma1.2p1_0249F.1_g102260' => 'hma', 'Hma1.2p1_0453F.1_g156190' => 'hma', 'Hma1.2p1_0695F.1_g204380' => 'hma', 'Hma1.2p1_0749F.1_g212650' => 'hma', 'Hma1.2p1_2156F.1_g315420' => 'hma', 'Hma1.2p1_2686F.1_g326940' => 'hma', 'HPP92_006428' => 'vpl', 'HPP92_012069' => 'vpl', 'HPP92_014129' => 'vpl', 'HPP92_014133' => 'vpl', 'HPP92_017315' => 'vpl', 'HPP92_026445' => 'vpl', 'HPP92_026446' => 'vpl', 'Hund00774' => 'sun', 'Hund07682' => 'sun', 'Hund21413' => 'sun', 'Hund23462' => 'sun', 'Hund23463' => 'sun', 'Lalb_Chr03g0027911' => 'lal', 'Lalb_Chr13g0304271' => 'lal', 'Lalb_Chr19g0137471' => 'lal', 'Lalb_Chr22g0350651' => 'lal', 'Lalb_Chr24g0395151' => 'lal', 'Lj1A1231T40' => 'lonja', 'Lj1A221T48' => 'lonja', 'Lj1C924T12' => 'lonja', 'Lj2C993G6' => 'lonja', 'Lj3g0005790' => 'lja', 'Lj3g0015432' => 'lja', 'Lj3g0017722' => 'lja', 'Lj3g0018497' => 'lja', 'Lj4g0025071' => 'lja', 'Lsat_1_v5_gn_1_129680' => 'lsa', 'Lsat_1_v5_gn_2_25321' => 'lsa', 'Lsat_1_v5_gn_2_95461' => 'lsa', 'Lsat_1_v5_gn_4_159620' => 'lsa', 'Lsat_1_v5_gn_6_41301' => 'lsa', 'Lsat_1_v5_gn_6_74660' => 'lsa', 'Lsat_1_v5_gn_7_11520' => 'lsa', 'Lsat_1_v5_gn_9_67680' => 'lsa', 'Manes.04G008300' => 'mes', 'Manes.04G008400' => 'mes', 'Manes.04G026500' => 'mes', 'Manes.10G135300' => 'mes', 'Manes.11G157300' => 'mes', 'Manes.12G074000' => 'mes', 'Manes.16G006200' => 'mes', 'Manes.17G026400' => 'mes', 'Mapoly0024s0086' => 'mpo', 'Mapoly0024s0087' => 'mpo', 'Mapoly0071s0057' => 'mpo', 'Mapoly0204s0012' => 'mpo', 'MBI04_g37681_MAGBIO' => 'mbi', 'MBI05_g17779_MAGBIO' => 'mbi', 'MBI12_g31184_MAGBIO' => 'mbi', 'MBI17_g11083_MAGBIO' => 'mbi', 'MBI18_g03883_MAGBIO' => 'mbi', 'MBI18_g28940_MAGBIO' => 'mbi', 'MCO01G690' => 'mco', 'MD03G1109900' => 'mdo', 'MD03G1134800' => 'mdo', 'MD05G1348000' => 'mdo', 'MD10G1322400' => 'mdo', 'MD11G1123300' => 'mdo', 'MD11G1157600' => 'mdo', 'Medtr2g084875' => 'mtr', 'Medtr2g088130' => 'mtr', 'Medtr4g055310' => 'mtr', 'Medtr4g061070' => 'mtr', 'Medtr4g132250' => 'mtr', 'MELO3C004795.2' => 'cme', 'MELO3C004797.2' => 'cme', 'MELO3C007396.2' => 'cme', 'MELO3C019277.2' => 'cme', 'MELO3C021449.2' => 'cme', 'MELO3C025736.2' => 'cme', 'Migut.D02175' => 'egut', 'Migut.H01573' => 'egut', 'Migut.M01327' => 'egut', 'Migut.N02513' => 'egut', 'MSTRG.14638' => 'ama', 'MSTRG.18632' => 'ama', 'MSTRG.7203' => 'ama', 'Nitab4.5_0000533g0140' => 'nta', 'Nitab4.5_0000888g0150' => 'nta', 'Nitab4.5_0001453g0040' => 'nta', 'Nitab4.5_0002827g0090' => 'nta', 'Nitab4.5_0003082g0040' => 'nta', 'Nitab4.5_0007799g0040' => 'nta', 'Nitab4.5_0008983g0010' => 'nta', 'Nitab4.5_0009017g0020' => 'nta', 'Nn1g02132' => 'nnu', 'Nn1g03492' => 'nnu', 'Nn1g03493' => 'nnu', 'Nn1g03494' => 'nnu', 'Nn1g07164' => 'nnu', 'Nn1g07291' => 'nnu', 'Nn2g10655' => 'nnu', 'Nn2g11652' => 'nnu', 'Nn2g14008' => 'nnu', 'Nn3g17476' => 'nnu', 'Nn3g17477' => 'nnu', 'Nn4g22370' => 'nnu', 'Nn4g25255' => 'nnu', 'Nn5g27755' => 'nnu', 'Nn6g34260' => 'nnu', 'Nn6g35041' => 'nnu', 'Oeu005924.1' => 'oeu', 'Oeu008383.1' => 'oeu', 'Oeu014928.1' => 'oeu', 'Oeu019889.1' => 'oeu', 'Oeu022271.1' => 'oeu', 'Oeu025271.1' => 'oeu', 'Oeu036302.1' => 'oeu', 'Oeu044100.1' => 'oeu', 'Os01g0528300' => 'osa', 'Os03g0286200' => 'osa', 'Os04g0406600' => 'osa', 'Os07g0512000' => 'osa', 'Os07g0694600' => 'osa', 'Os08g0411000' => 'osa', 'Os09g0565700' => 'osa', 'Os09g0566050' => 'osa', 'Os10g0523700' => 'osa', 'Peaxi162Scf00002g00514' => 'pax', 'Peaxi162Scf00047g01817' => 'pax', 'Peaxi162Scf00114g00001' => 'pax', 'Peaxi162Scf00147g00613' => 'pax', 'Peaxi162Scf00389g00425' => 'pax', 'PGR042G1139' => 'pgr', 'PGR042G3273' => 'pgr', 'PGR102G2180' => 'pgr', 'PGR119G0234' => 'pgr', 'PGR119G0668' => 'pgr', 'PGSC0003DMG400007122' => 'stu', 'PGSC0003DMG400016478' => 'stu', 'PGSC0003DMG400025374' => 'stu', 'PGSC0003DMG400026536' => 'stu', 'Phvul.003G079600' => 'pvu', 'Phvul.005G115600' => 'pvu', 'Phvul.005G127100' => 'pvu', 'Phvul.006G149500' => 'pvu', 'Phvul.006G149600' => 'pvu', 'Phvul.011G071800' => 'pvu', 'Phvul.011G090400' => 'pvu', 'Potri.004G013400' => 'ptr', 'Potri.004G188100' => 'ptr', 'Potri.008G195500' => 'ptr', 'Potri.009G148800' => 'ptr', 'Potri.011G004700' => 'ptr', 'Pp3c17_22810' => 'ppa', 'Pp3c18_4480' => 'ppa', 'Pp3c19_13030' => 'ppa', 'Pp3c1_33620' => 'ppa', 'Pp3c2_9380' => 'ppa', 'PRCOL_00001023' => 'pco', 'Prupe.3G216300' => 'ppe', 'Prupe.4G019500' => 'ppe', 'Prupe.6G092500' => 'ppe', 'Prupe.6G119200' => 'ppe', 'Psat0s1945g0080' => 'psa', 'Psat0s4167g0040' => 'psa', 'Psat1g185800' => 'psa', 'Psat4g006440' => 'psa', 'Psat4g006480' => 'psa', 'Psat4g168120' => 'psa', 'Psat5g255680' => 'psa', 'Psat5g261760' => 'psa', 'Psat7g222120' => 'psa', 'PSO063G7252' => 'pso', 'PSO170G4778' => 'pso', 'PSO210G2249' => 'pso', 'PSO339G2411' => 'pso', 'PSO339G2457' => 'pso', 'PSO339G2854' => 'pso', 'PSO339G4288' => 'pso', 'PSO339G4615' => 'pso', 'PSO384G2796' => 'pso', 'PSO384G2940' => 'pso', 'PSO384G4227' => 'pso', 'PSO478G1425' => 'pso', 'PSO541G3863' => 'pso', 'PSO675G0507' => 'pso', 'PSO782G0338' => 'pso', 'PSO832G0644' => 'pso', 'QL01p013664' => 'qlo', 'QL01p036598' => 'qlo', 'QL05p072984' => 'qlo', 'QL08p005768' => 'qlo', 'QL08p032743' => 'qlo', 'QL93p0073_0439' => 'qlo', 'QL93p0073_0444' => 'qlo', 'RcHm_v2.0_Chr5g0002851' => 'rch', 'RcHm_v2.0_Chr5g0055201' => 'rch', 'RcHm_v2.0_Chr5g0061191' => 'rch', 'RcHm_v2.0_Chr7g0203231' => 'rch', 'Rhsim01G0208100' => 'rsi', 'Rhsim01G0208200' => 'rsi', 'Rhsim02G0106500' => 'rsi', 'Rhsim03G0107900' => 'rsi', 'Rhsim06G0163400' => 'rsi', 'Rhsim13G0105200' => 'rsi', 'Sabra04G0006300' => 'sbr', 'Sabra04G0127000' => 'sbr', 'Sabra08G0148700' => 'sbr', 'Sabra09G0117400' => 'sbr', 'SalBow1G3326' => 'sbo', 'SalBow3G3228' => 'sbo', 'SalBow6G1634' => 'sbo', 'SalBow6G3603' => 'sbo', 'SalBow6G5266' => 'sbo', 'SalBow7G2265' => 'sbo', 'SalBow8G0850' => 'sbo', 'SalBow8G2592' => 'sbo', 'Sc05g0009240' => 'sci', 'Sc12g0002300' => 'sci', 'Sc21g0000100' => 'sci', 'Sc21g0004720' => 'sci', 'Sed0002949' => 'sed', 'Sed0004114' => 'sed', 'Sed0004306' => 'sed', 'Sed0006172' => 'sed', 'Sed0008413' => 'sed', 'Sed0013809' => 'sed', 'Sed0019556' => 'sed', 'SEGI_03570' => 'sgi', 'SEGI_07859' => 'sgi', 'SEGI_15042' => 'sgi', 'SEGI_16263' => 'sgi', 'SEGI_16552' => 'sgi', 'SEGI_24331' => 'sgi', 'SEGI_27316' => 'sgi', 'SEGI_29521' => 'sgi', 'SEGI_41342' => 'sgi', 'SGA_v2.0_scaffold27G11617' => 'sas', 'SGA_v2.0_scaffold316G48428' => 'sas', 'SGA_v2.0_scaffold49G18261' => 'sas', 'SGA_v2.0_scaffold7G03831' => 'sas', 'SGA_v2.0_scaffold93G28359' => 'sas', 'SHI02210' => 'shi', 'SHI06028' => 'shi', 'SHI06321' => 'shi', 'SMO111G0012' => 'smo', 'SMO228G0080' => 'smo', 'SMO356G0756' => 'smo', 'Solyc02g080620.3' => 'sly', 'Solyc06g074530.1' => 'sly', 'Solyc11g066890.1' => 'sly', 'Solyc11g072520.3' => 'sly', 'Sopen02g025330' => 'spe', 'Sopen06g031000' => 'spe', 'Sopen09g008240' => 'spe', 'Sopen09g025210' => 'spe', 'Sopen11g026600' => 'spe', 'Sopen11g030170' => 'spe', 'Sp1g10420' => 'spa', 'Sp3g06570' => 'spa', 'Sp4g10660' => 'spa', 'Sp5g16460' => 'spa', 'Sp6g22710' => 'spa', 'TAR365G0112' => 'tar', 'TAR369G0717' => 'tar', 'TAR374G0976' => 'tar', 'TAR623G1128' => 'tar', 'TAR626G1937' => 'tar', 'TAR627G0123' => 'tar', 'TAR628G0305' => 'tar', 'TAR636G1176' => 'tar', 'TAR636G2442' => 'tar', 'THA.LOC104800556' => 'tha', 'THA.LOC104809501' => 'tha', 'THA.LOC104815126' => 'tha', 'THA.LOC104815732' => 'tha', 'THA.LOC104823528' => 'tha', 'Thecc.02G365600' => 'tca', 'Thecc.06G222300' => 'tca', 'Thecc.09G261800' => 'tca', 'Thecc.09G291400' => 'tca', 'Thhalv10003028m.g' => 'esa', 'Thhalv10007886m.g' => 'esa', 'Thhalv10016085m.g' => 'esa', 'Thhalv10016681m.g' => 'esa', 'Thhalv10020951m.g' => 'esa', 'TPR.G15598' => 'tpr', 'TPR.G29305' => 'tpr', 'TPR.G32395' => 'tpr', 'TPR.G36998' => 'tpr', 'TPR.G4227' => 'tpr', 'TWI18G1433' => 'twi', 'TWI31G0755' => 'twi', 'TWI38G0912' => 'twi', 'TWI75G1097' => 'twi', 'TWI75G1619' => 'twi', 'TWI79G1336' => 'twi', 'unitig_0.g943' => 'ugi', 'unitig_0.g944' => 'ugi', 'unitig_22.g6646' => 'ugi', 'unitig_37.g12681' => 'ugi', 'unitig_8.g3290' => 'ugi', 'vmacro03278' => 'vma', 'vmacro12197' => 'vma', 'vmacro14478' => 'vma', 'vmacro15787' => 'vma', 'vmacro15789' => 'vma', 'vmacro15790' => 'vma', 'vmacro15806' => 'vma', 'vmacro22907' => 'vma', 'vmacro22908' => 'vma', 'vmacro22909' => 'vma', 'vmacro23108' => 'vma', 'VMungo0540G0540' => 'vmu', 'VMungo0540G2468' => 'vmu', 'VMungo1080G0390' => 'vmu', 'VMungo1080G1165' => 'vmu', 'VMungo1127G0170' => 'vmu', 'VMungo1127G2099' => 'vmu', 'VMungo1215G3013' => 'vmu', 'Zm00001eb013110' => 'zma', 'Zm00001eb084260' => 'zma', 'Zm00001eb096110' => 'zma', 'Zm00001eb217510' => 'zma', 'Zm00001eb322550' => 'zma', 'Zm00001eb390770' => 'zma', 'Zm00001eb397170' => 'zma', 'Zm00001eb404610' => 'zma', 'Zm00001eb421790' => 'zma' ), 'gf_id' => 'HOM05D000911', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000911' ), 'data_identifier' => 'HOM05D000911', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000911', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27780' => 'bna', 'A03p35380' => 'bna', 'A04p21160' => 'bna', 'A05p40570' => 'bna', 'A06p26900' => 'bna', 'A08p33230' => 'bna', 'A09p65960' => 'bna', 'A10p18290' => 'bna', 'Aa31LG1G12990' => 'aar', 'Aa31LG1G2980' => 'aar', 'Aa31LG4G14320' => 'aar', 'Aa31LG7G11800' => 'aar', 'Aa31sc36G50' => 'aar', 'Aa31sc36G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3721' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5459' => 'aag', 'Actinidia03028' => 'ach', 'Actinidia03753' => 'ach', 'Actinidia04187' => 'ach', 'Actinidia05509' => 'ach', 'Actinidia24180' => 'ach', 'Actinidia26906' => 'ach', 'Actinidia37097' => 'ach', 'Actinidia38249' => 'ach', 'Ah.01g003470' => 'amhyb', 'Ah.01g004580' => 'amhyb', 'Ah.01g014850' => 'amhyb', 'Ah.01g016830' => 'amhyb', 'Ah.14g088000' => 'amhyb', 'AL1G22980' => 'aly', 'AL3G18990' => 'aly', 'AL4G22440' => 'aly', 'AL4G33180' => 'aly', 'AL5G22920' => 'aly', 'AL6G33660' => 'aly', 'AL8G20720' => 'aly', 'Aqoxy1G00935' => 'aox', 'Aqoxy1G02094' => 'aox', 'Aqoxy2G01239' => 'aox', 'Aqoxy4G01870' => 'aox', 'Aqoxy7G00450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.36ZVTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71EM27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5D6C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH3WRE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3NCM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RIM768' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YB5YRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z36GDV' => 'arhy', 'AT1G08250' => 'ath', 'AT1G11790' => 'ath', 'AT2G27820' => 'ath', 'AT3G07630' => 'ath', 'AT3G44720' => 'ath', 'AT5G22630' => 'ath', 'ATR0693G304' => 'atr', 'ATR0794G109' => 'atr', 'ATR0820G120' => 'atr', 'ATR1159G064' => 'atr', 'Atru.chr10.2239' => 'acertr', 'Atru.chr3.3371' => 'acertr', 'Atru.chr6.3202' => 'acertr', 'AUR62006499' => 'cqu', 'AUR62012718' => 'cqu', 'AUR62021938' => 'cqu', 'AUR62023932' => 'cqu', 'AUR62025034' => 'cqu', 'AUR62025035' => 'cqu', 'AUR62038307' => 'cqu', 'AUR62043466' => 'cqu', 'BcaB02g10748' => 'bca', 'BcaB03g13231' => 'bca', 'BcaB03g14689' => 'bca', 'BcaB05g22716' => 'bca', 'BcaB06g28172' => 'bca', 'BcaB08g36413' => 'bca', 'BcaC01g02186' => 'bca', 'BcaC01g04272' => 'bca', 'BcaC02g08080' => 'bca', 'BcaC02g08227' => 'bca', 'BcaC03g13901' => 'bca', 'BcaC04g19593' => 'bca', 'BcaC04g20874' => 'bca', 'BcaC05g29557' => 'bca', 'BcaC06g35505' => 'bca', 'BcaC07g41954' => 'bca', 'BcaC07g41955' => 'bca', 'BcaC07g41956' => 'bca', 'BcaC07g42519' => 'bca', 'BcaC07g42520' => 'bca', 'BcaC07g42523' => 'bca', 'BcaC07g42524' => 'bca', 'BcaC07g42525' => 'bca', 'BcaC08g47480' => 'bca', 'BcaC08g47481' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00530' => 'bna', 'BolC2t07178H' => 'bol', 'BolC3t16567H' => 'bol', 'BolC4t27234H' => 'bol', 'BolC5t29728H' => 'bol', 'BolC5t34622H' => 'bol', 'BolC6t40321H' => 'bol', 'BolC7t42028H' => 'bol', 'BolC8t49125H' => 'bol', 'BolC8t52538H' => 'bol', 'BolC8t52539H' => 'bol', 'BolC9t56681H' => 'bol', 'BolC9t58266H' => 'bol', 'BolSC21t60294H' => 'bol', 'BraA02t05670Z' => 'bra', 'BraA03t12716Z' => 'bra', 'BraA04t17685Z' => 'bra', 'BraA05t22788Z' => 'bra', 'BraA06t24032Z' => 'bra', 'BraA06t25625Z' => 'bra', 'BraA07t27930Z' => 'bra', 'BraA08t35242Z' => 'bra', 'BraA09t38609Z' => 'bra', 'BraA10t43905Z' => 'bra', 'C02p11060' => 'bna', 'C03p42990' => 'bna', 'C03p67310' => 'bna', 'C04p56990' => 'bna', 'C04p58660' => 'bna', 'C05p09890' => 'bna', 'C05p59680' => 'bna', 'C06p19830' => 'bna', 'C06p53040' => 'bna', 'C07p15230' => 'bna', 'C08p50070' => 'bna', 'C08p50090' => 'bna', 'C09p38330' => 'bna', 'C09p53940' => 'bna', 'CAN.G1014.1' => 'can', 'CAN.G644.30' => 'can', 'CAN.G84.47' => 'can', 'CAN.G919.8' => 'can', 'CANSAT54G0113' => 'cansat', 'CANSAT54G1286' => 'cansat', 'CANSAT64G1020' => 'cansat', 'CARHR008080' => 'chi', 'CARHR008090' => 'chi', 'CARHR012130' => 'chi', 'CARHR038390' => 'chi', 'CARHR082330' => 'chi', 'CARHR120520' => 'chi', 'CARHR151470' => 'chi', 'CARHR190950' => 'chi', 'Carub.0001s0760' => 'cru', 'Carub.0001s1146' => 'cru', 'Carub.0003s0721' => 'cru', 'Carub.0004s0858' => 'cru', 'Carub.0005s1040' => 'cru', 'Carub.0006s2035' => 'cru', 'Carub.0015s0005' => 'cru', 'Ca_01607_v3' => 'car', 'Ca_01677_v3' => 'car', 'Ca_06087_v3' => 'car', 'Ca_19238_v3' => 'car', 'Ca_19373_v3' => 'car', 'Ca_21079_v3' => 'car', 'CBR_g54016' => 'cbr', 'CBR_g54018' => 'cbr', 'CBR_g54020' => 'cbr', 'Cc01_g09780' => 'ccan', 'Cc01_g11680' => 'ccan', 'Cc02_g15610' => 'ccan', 'Cc05_g04350' => 'ccan', 'Cc09_g01580' => 'ccan', 'CDE01G0795' => 'cde', 'CDE02G2024' => 'cde', 'CDE02G2260' => 'cde', 'CDE02G4561' => 'cde', 'CDE05G2733' => 'cde', 'CDE05G3422' => 'cde', 'CDE06G2003' => 'cde', 'CDE08G0576' => 'cde', 'CDE09G0048' => 'cde', 'CDE11G0805' => 'cde', 'Cfa003644' => 'cfa', 'Cfa006290' => 'cfa', 'Cfa010080' => 'cfa', 'Cfa011376' => 'cfa', 'Cfa011576' => 'cfa', 'Cfa011577' => 'cfa', 'Cfa014389' => 'cfa', 'Ciclev10006044m.g' => 'ccl', 'Ciclev10006954m.g' => 'ccl', 'Ciclev10015131m.g' => 'ccl', 'Ciclev10015580m.g' => 'ccl', 'Ciclev10028359m.g' => 'ccl', 'Ciclev10028573m.g' => 'ccl', 'CiPaw.03G159300' => 'cil', 'CiPaw.04G115100' => 'cil', 'CiPaw.09G092800' => 'cil', 'CiPaw.10G071800' => 'cil', 'CiPaw.13G105800' => 'cil', 'CiPaw.13G141000' => 'cil', 'CiPaw.14G103400' => 'cil', 'ClCG01G012700' => 'cla', 'ClCG01G012720' => 'cla', 'ClCG01G021920' => 'cla', 'ClCG02G008870' => 'cla', 'ClCG02G020840' => 'cla', 'ClCG02G021930' => 'cla', 'COL.COLO4_19302' => 'col', 'COL.COLO4_25262' => 'col', 'COL.COLO4_31788' => 'col', 'Cpa.g.c34684' => 'cpa', 'Cpa.g.c36520.1' => 'cpa', 'Cpa.g.c45626' => 'cpa', 'Cpa.g.sc121.17' => 'cpa', 'Cpa.g.sc13.22' => 'cpa', 'Cpa.g.sc87.88' => 'cpa', 'Cre06.g261800' => 'cre', 'CsaV3_1G014500' => 'csa', 'CsaV3_1G014510' => 'csa', 'CsaV3_2G034880' => 'csa', 'CsaV3_6G014760' => 'csa', 'CsaV3_6G021500' => 'csa', 'CsaV3_6G048980' => 'csa', 'CSS0002511' => 'camsi', 'CSS0007556' => 'camsi', 'CSS0008532' => 'camsi', 'CSS0009709' => 'camsi', 'CSS0010486' => 'camsi', 'CSS0016768' => 'camsi', 'CSS0023512' => 'camsi', 'CSS0025341' => 'camsi', 'CSS0027999' => 'camsi', 'CSS0028944' => 'camsi', 'CSS0032292' => 'camsi', 'CSS0032464' => 'camsi', 'CSS0037153' => 'camsi', 'CSS0039256' => 'camsi', 'CSS0048392' => 'camsi', 'CSS0050458' => 'camsi', 'DCAR_004224' => 'dca', 'DCAR_006147' => 'dca', 'DCAR_006465' => 'dca', 'DCAR_008159' => 'dca', 'DCAR_012164' => 'dca', 'DCAR_019764' => 'dca', 'Dinv05418' => 'din', 'Dinv10839' => 'din', 'Dinv12521' => 'din', 'Dinv13900' => 'din', 'Dinv29426' => 'din', 'Duzib150G0263' => 'dzi', 'Duzib168G1178' => 'dzi', 'Duzib168G1924' => 'dzi', 'Duzib170G0299' => 'dzi', 'Duzib170G0813' => 'dzi', 'Duzib235G1128' => 'dzi', 'Duzib248G1060' => 'dzi', 'ECA232G1910' => 'eca', 'ECA233G4621' => 'eca', 'ECA238G1216' => 'eca', 'ECA238G1784' => 'eca', 'ECA248G1242' => 'eca', 'EL10Ac8g20071' => 'bvu', 'EL10Ac9g21086' => 'bvu', 'EL10Ac9g22407' => 'bvu', 'EL10Ac9g22412' => 'bvu', 'Eucgr.A01119' => 'egr', 'Eucgr.E04043' => 'egr', 'Eucgr.J00428' => 'egr', 'Eucgr.J00958' => 'egr', 'FAN11G3091' => 'fan', 'FAN11G3651' => 'fan', 'FAN16G2566' => 'fan', 'FAN21G3155' => 'fan', 'FAN21G3400' => 'fan', 'FAN21G3543' => 'fan', 'FAN25G0234' => 'fan', 'FAN25G1422' => 'fan', 'FAN25G3392' => 'fan', 'FvH4_3g01940' => 'fve', 'FvH4_3g29870' => 'fve', 'FvH4_3g33680' => 'fve', 'Glyma.09G004200' => 'gma', 'Glyma.11G151288' => 'gma', 'Glyma.11G189100' => 'gma', 'Glyma.12G072500' => 'gma', 'Glyma.12G085500' => 'gma', 'Glyma.12G181800' => 'gma', 'Glyma.12G193000' => 'gma', 'Glyma.13G309300' => 'gma', 'Glyma.13G319000' => 'gma', 'Glyma.17G012600' => 'gma', 'Gohir.A06G148600' => 'ghi', 'Gohir.A07G115800' => 'ghi', 'Gohir.A08G003600' => 'ghi', 'Gohir.A09G093300' => 'ghi', 'Gohir.A09G105400' => 'ghi', 'Gohir.A09G105500' => 'ghi', 'Gohir.D06G154600' => 'ghi', 'Gohir.D07G120200' => 'ghi', 'Gohir.D08G013900' => 'ghi', 'Gohir.D09G093100' => 'ghi', 'Gohir.D09G102200' => 'ghi', 'Gohir.D09G102300' => 'ghi', 'Gorai.001G129400' => 'gra', 'Gorai.004G008200' => 'gra', 'Gorai.006G109800' => 'gra', 'Gorai.006G119500' => 'gra', 'Gorai.006G121300' => 'gra', 'Gorai.010G180700' => 'gra', 'GSVIVG01012716001' => 'vvi', 'GSVIVG01025118001' => 'vvi', 'GSVIVG01030439001' => 'vvi', 'GSVIVG01031397001' => 'vvi', 'HanXRQChr01g0004201' => 'han', 'HanXRQChr02g0054941' => 'han', 'HanXRQChr05g0141811' => 'han', 'HanXRQChr07g0197751' => 'han', 'HanXRQChr11g0346691' => 'han', 'HanXRQChr13g0396971' => 'han', 'HanXRQChr14g0432951' => 'han', 'HanXRQChr14g0452001' => 'han', 'HanXRQChr15g0496681' => 'han', 'HanXRQChr17g0557491' => 'han', 'HanXRQChr17g0557501' => 'han', 'Haze_06809' => 'cav', 'Haze_12852' => 'cav', 'Haze_15850' => 'cav', 'Haze_23446' => 'cav', 'Haze_23942' => 'cav', 'Haze_23943' => 'cav', 'Hma1.2p1_0091F.1_g046450' => 'hma', 'Hma1.2p1_0128F.1_g059910' => 'hma', 'Hma1.2p1_0249F.1_g102260' => 'hma', 'Hma1.2p1_0453F.1_g156190' => 'hma', 'Hma1.2p1_0695F.1_g204380' => 'hma', 'Hma1.2p1_0749F.1_g212650' => 'hma', 'Hma1.2p1_2156F.1_g315420' => 'hma', 'Hma1.2p1_2686F.1_g326940' => 'hma', 'HPP92_006428' => 'vpl', 'HPP92_012069' => 'vpl', 'HPP92_014129' => 'vpl', 'HPP92_014133' => 'vpl', 'HPP92_017315' => 'vpl', 'HPP92_026445' => 'vpl', 'HPP92_026446' => 'vpl', 'Hund00774' => 'sun', 'Hund07682' => 'sun', 'Hund21413' => 'sun', 'Hund23462' => 'sun', 'Hund23463' => 'sun', 'Lalb_Chr03g0027911' => 'lal', 'Lalb_Chr13g0304271' => 'lal', 'Lalb_Chr19g0137471' => 'lal', 'Lalb_Chr22g0350651' => 'lal', 'Lalb_Chr24g0395151' => 'lal', 'Lj1A1231T40' => 'lonja', 'Lj1A221T48' => 'lonja', 'Lj1C924T12' => 'lonja', 'Lj2C993G6' => 'lonja', 'Lj3g0005790' => 'lja', 'Lj3g0015432' => 'lja', 'Lj3g0017722' => 'lja', 'Lj3g0018497' => 'lja', 'Lj4g0025071' => 'lja', 'Lsat_1_v5_gn_1_129680' => 'lsa', 'Lsat_1_v5_gn_2_25321' => 'lsa', 'Lsat_1_v5_gn_2_95461' => 'lsa', 'Lsat_1_v5_gn_4_159620' => 'lsa', 'Lsat_1_v5_gn_6_41301' => 'lsa', 'Lsat_1_v5_gn_6_74660' => 'lsa', 'Lsat_1_v5_gn_7_11520' => 'lsa', 'Lsat_1_v5_gn_9_67680' => 'lsa', 'Manes.04G008300' => 'mes', 'Manes.04G008400' => 'mes', 'Manes.04G026500' => 'mes', 'Manes.10G135300' => 'mes', 'Manes.11G157300' => 'mes', 'Manes.12G074000' => 'mes', 'Manes.16G006200' => 'mes', 'Manes.17G026400' => 'mes', 'Mapoly0024s0086' => 'mpo', 'Mapoly0024s0087' => 'mpo', 'Mapoly0071s0057' => 'mpo', 'Mapoly0204s0012' => 'mpo', 'MBI04_g37681_MAGBIO' => 'mbi', 'MBI05_g17779_MAGBIO' => 'mbi', 'MBI12_g31184_MAGBIO' => 'mbi', 'MBI17_g11083_MAGBIO' => 'mbi', 'MBI18_g03883_MAGBIO' => 'mbi', 'MBI18_g28940_MAGBIO' => 'mbi', 'MCO01G690' => 'mco', 'MD03G1109900' => 'mdo', 'MD03G1134800' => 'mdo', 'MD05G1348000' => 'mdo', 'MD10G1322400' => 'mdo', 'MD11G1123300' => 'mdo', 'MD11G1157600' => 'mdo', 'Medtr2g084875' => 'mtr', 'Medtr2g088130' => 'mtr', 'Medtr4g055310' => 'mtr', 'Medtr4g061070' => 'mtr', 'Medtr4g132250' => 'mtr', 'MELO3C004795.2' => 'cme', 'MELO3C004797.2' => 'cme', 'MELO3C007396.2' => 'cme', 'MELO3C019277.2' => 'cme', 'MELO3C021449.2' => 'cme', 'MELO3C025736.2' => 'cme', 'Migut.D02175' => 'egut', 'Migut.H01573' => 'egut', 'Migut.M01327' => 'egut', 'Migut.N02513' => 'egut', 'MSTRG.14638' => 'ama', 'MSTRG.18632' => 'ama', 'MSTRG.7203' => 'ama', 'Nitab4.5_0000533g0140' => 'nta', 'Nitab4.5_0000888g0150' => 'nta', 'Nitab4.5_0001453g0040' => 'nta', 'Nitab4.5_0002827g0090' => 'nta', 'Nitab4.5_0003082g0040' => 'nta', 'Nitab4.5_0007799g0040' => 'nta', 'Nitab4.5_0008983g0010' => 'nta', 'Nitab4.5_0009017g0020' => 'nta', 'Nn1g02132' => 'nnu', 'Nn1g03492' => 'nnu', 'Nn1g03493' => 'nnu', 'Nn1g03494' => 'nnu', 'Nn1g07164' => 'nnu', 'Nn1g07291' => 'nnu', 'Nn2g10655' => 'nnu', 'Nn2g11652' => 'nnu', 'Nn2g14008' => 'nnu', 'Nn3g17476' => 'nnu', 'Nn3g17477' => 'nnu', 'Nn4g22370' => 'nnu', 'Nn4g25255' => 'nnu', 'Nn5g27755' => 'nnu', 'Nn6g34260' => 'nnu', 'Nn6g35041' => 'nnu', 'Oeu005924.1' => 'oeu', 'Oeu008383.1' => 'oeu', 'Oeu014928.1' => 'oeu', 'Oeu019889.1' => 'oeu', 'Oeu022271.1' => 'oeu', 'Oeu025271.1' => 'oeu', 'Oeu036302.1' => 'oeu', 'Oeu044100.1' => 'oeu', 'Os01g0528300' => 'osa', 'Os03g0286200' => 'osa', 'Os04g0406600' => 'osa', 'Os07g0512000' => 'osa', 'Os07g0694600' => 'osa', 'Os08g0411000' => 'osa', 'Os09g0565700' => 'osa', 'Os09g0566050' => 'osa', 'Os10g0523700' => 'osa', 'Peaxi162Scf00002g00514' => 'pax', 'Peaxi162Scf00047g01817' => 'pax', 'Peaxi162Scf00114g00001' => 'pax', 'Peaxi162Scf00147g00613' => 'pax', 'Peaxi162Scf00389g00425' => 'pax', 'PGR042G1139' => 'pgr', 'PGR042G3273' => 'pgr', 'PGR102G2180' => 'pgr', 'PGR119G0234' => 'pgr', 'PGR119G0668' => 'pgr', 'PGSC0003DMG400007122' => 'stu', 'PGSC0003DMG400016478' => 'stu', 'PGSC0003DMG400025374' => 'stu', 'PGSC0003DMG400026536' => 'stu', 'Phvul.003G079600' => 'pvu', 'Phvul.005G115600' => 'pvu', 'Phvul.005G127100' => 'pvu', 'Phvul.006G149500' => 'pvu', 'Phvul.006G149600' => 'pvu', 'Phvul.011G071800' => 'pvu', 'Phvul.011G090400' => 'pvu', 'Potri.004G013400' => 'ptr', 'Potri.004G188100' => 'ptr', 'Potri.008G195500' => 'ptr', 'Potri.009G148800' => 'ptr', 'Potri.011G004700' => 'ptr', 'Pp3c17_22810' => 'ppa', 'Pp3c18_4480' => 'ppa', 'Pp3c19_13030' => 'ppa', 'Pp3c1_33620' => 'ppa', 'Pp3c2_9380' => 'ppa', 'PRCOL_00001023' => 'pco', 'Prupe.3G216300' => 'ppe', 'Prupe.4G019500' => 'ppe', 'Prupe.6G092500' => 'ppe', 'Prupe.6G119200' => 'ppe', 'Psat0s1945g0080' => 'psa', 'Psat0s4167g0040' => 'psa', 'Psat1g185800' => 'psa', 'Psat4g006440' => 'psa', 'Psat4g006480' => 'psa', 'Psat4g168120' => 'psa', 'Psat5g255680' => 'psa', 'Psat5g261760' => 'psa', 'Psat7g222120' => 'psa', 'PSO063G7252' => 'pso', 'PSO170G4778' => 'pso', 'PSO210G2249' => 'pso', 'PSO339G2411' => 'pso', 'PSO339G2457' => 'pso', 'PSO339G2854' => 'pso', 'PSO339G4288' => 'pso', 'PSO339G4615' => 'pso', 'PSO384G2796' => 'pso', 'PSO384G2940' => 'pso', 'PSO384G4227' => 'pso', 'PSO478G1425' => 'pso', 'PSO541G3863' => 'pso', 'PSO675G0507' => 'pso', 'PSO782G0338' => 'pso', 'PSO832G0644' => 'pso', 'QL01p013664' => 'qlo', 'QL01p036598' => 'qlo', 'QL05p072984' => 'qlo', 'QL08p005768' => 'qlo', 'QL08p032743' => 'qlo', 'QL93p0073_0439' => 'qlo', 'QL93p0073_0444' => 'qlo', 'RcHm_v2.0_Chr5g0002851' => 'rch', 'RcHm_v2.0_Chr5g0055201' => 'rch', 'RcHm_v2.0_Chr5g0061191' => 'rch', 'RcHm_v2.0_Chr7g0203231' => 'rch', 'Rhsim01G0208100' => 'rsi', 'Rhsim01G0208200' => 'rsi', 'Rhsim02G0106500' => 'rsi', 'Rhsim03G0107900' => 'rsi', 'Rhsim06G0163400' => 'rsi', 'Rhsim13G0105200' => 'rsi', 'Sabra04G0006300' => 'sbr', 'Sabra04G0127000' => 'sbr', 'Sabra08G0148700' => 'sbr', 'Sabra09G0117400' => 'sbr', 'SalBow1G3326' => 'sbo', 'SalBow3G3228' => 'sbo', 'SalBow6G1634' => 'sbo', 'SalBow6G3603' => 'sbo', 'SalBow6G5266' => 'sbo', 'SalBow7G2265' => 'sbo', 'SalBow8G0850' => 'sbo', 'SalBow8G2592' => 'sbo', 'Sc05g0009240' => 'sci', 'Sc12g0002300' => 'sci', 'Sc21g0000100' => 'sci', 'Sc21g0004720' => 'sci', 'Sed0002949' => 'sed', 'Sed0004114' => 'sed', 'Sed0004306' => 'sed', 'Sed0006172' => 'sed', 'Sed0008413' => 'sed', 'Sed0013809' => 'sed', 'Sed0019556' => 'sed', 'SEGI_03570' => 'sgi', 'SEGI_07859' => 'sgi', 'SEGI_15042' => 'sgi', 'SEGI_16263' => 'sgi', 'SEGI_16552' => 'sgi', 'SEGI_24331' => 'sgi', 'SEGI_27316' => 'sgi', 'SEGI_29521' => 'sgi', 'SEGI_41342' => 'sgi', 'SGA_v2.0_scaffold27G11617' => 'sas', 'SGA_v2.0_scaffold316G48428' => 'sas', 'SGA_v2.0_scaffold49G18261' => 'sas', 'SGA_v2.0_scaffold7G03831' => 'sas', 'SGA_v2.0_scaffold93G28359' => 'sas', 'SHI02210' => 'shi', 'SHI06028' => 'shi', 'SHI06321' => 'shi', 'SMO111G0012' => 'smo', 'SMO228G0080' => 'smo', 'SMO356G0756' => 'smo', 'Solyc02g080620.3' => 'sly', 'Solyc06g074530.1' => 'sly', 'Solyc11g066890.1' => 'sly', 'Solyc11g072520.3' => 'sly', 'Sopen02g025330' => 'spe', 'Sopen06g031000' => 'spe', 'Sopen09g008240' => 'spe', 'Sopen09g025210' => 'spe', 'Sopen11g026600' => 'spe', 'Sopen11g030170' => 'spe', 'Sp1g10420' => 'spa', 'Sp3g06570' => 'spa', 'Sp4g10660' => 'spa', 'Sp5g16460' => 'spa', 'Sp6g22710' => 'spa', 'TAR365G0112' => 'tar', 'TAR369G0717' => 'tar', 'TAR374G0976' => 'tar', 'TAR623G1128' => 'tar', 'TAR626G1937' => 'tar', 'TAR627G0123' => 'tar', 'TAR628G0305' => 'tar', 'TAR636G1176' => 'tar', 'TAR636G2442' => 'tar', 'THA.LOC104800556' => 'tha', 'THA.LOC104809501' => 'tha', 'THA.LOC104815126' => 'tha', 'THA.LOC104815732' => 'tha', 'THA.LOC104823528' => 'tha', 'Thecc.02G365600' => 'tca', 'Thecc.06G222300' => 'tca', 'Thecc.09G261800' => 'tca', 'Thecc.09G291400' => 'tca', 'Thhalv10003028m.g' => 'esa', 'Thhalv10007886m.g' => 'esa', 'Thhalv10016085m.g' => 'esa', 'Thhalv10016681m.g' => 'esa', 'Thhalv10020951m.g' => 'esa', 'TPR.G15598' => 'tpr', 'TPR.G29305' => 'tpr', 'TPR.G32395' => 'tpr', 'TPR.G36998' => 'tpr', 'TPR.G4227' => 'tpr', 'TWI18G1433' => 'twi', 'TWI31G0755' => 'twi', 'TWI38G0912' => 'twi', 'TWI75G1097' => 'twi', 'TWI75G1619' => 'twi', 'TWI79G1336' => 'twi', 'unitig_0.g943' => 'ugi', 'unitig_0.g944' => 'ugi', 'unitig_22.g6646' => 'ugi', 'unitig_37.g12681' => 'ugi', 'unitig_8.g3290' => 'ugi', 'vmacro03278' => 'vma', 'vmacro12197' => 'vma', 'vmacro14478' => 'vma', 'vmacro15787' => 'vma', 'vmacro15789' => 'vma', 'vmacro15790' => 'vma', 'vmacro15806' => 'vma', 'vmacro22907' => 'vma', 'vmacro22908' => 'vma', 'vmacro22909' => 'vma', 'vmacro23108' => 'vma', 'VMungo0540G0540' => 'vmu', 'VMungo0540G2468' => 'vmu', 'VMungo1080G0390' => 'vmu', 'VMungo1080G1165' => 'vmu', 'VMungo1127G0170' => 'vmu', 'VMungo1127G2099' => 'vmu', 'VMungo1215G3013' => 'vmu', 'Zm00001eb013110' => 'zma', 'Zm00001eb084260' => 'zma', 'Zm00001eb096110' => 'zma', 'Zm00001eb217510' => 'zma', 'Zm00001eb322550' => 'zma', 'Zm00001eb390770' => 'zma', 'Zm00001eb397170' => 'zma', 'Zm00001eb404610' => 'zma', 'Zm00001eb421790' => 'zma' ) $gf_id = 'HOM05D000911' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000911' ) $data_identifier = 'HOM05D000911' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 16, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 5, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 6, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 8, 'nnu' => (int) 16, 'oeu' => (int) 8, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 5, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 16, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421790' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000911', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27780' => 'bna', 'A03p35380' => 'bna', 'A04p21160' => 'bna', 'A05p40570' => 'bna', 'A06p26900' => 'bna', 'A08p33230' => 'bna', 'A09p65960' => 'bna', 'A10p18290' => 'bna', 'Aa31LG1G12990' => 'aar', 'Aa31LG1G2980' => 'aar', 'Aa31LG4G14320' => 'aar', 'Aa31LG7G11800' => 'aar', 'Aa31sc36G50' => 'aar', 'Aa31sc36G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3721' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5459' => 'aag', 'Actinidia03028' => 'ach', 'Actinidia03753' => 'ach', 'Actinidia04187' => 'ach', 'Actinidia05509' => 'ach', 'Actinidia24180' => 'ach', 'Actinidia26906' => 'ach', 'Actinidia37097' => 'ach', 'Actinidia38249' => 'ach', 'Ah.01g003470' => 'amhyb', 'Ah.01g004580' => 'amhyb', 'Ah.01g014850' => 'amhyb', 'Ah.01g016830' => 'amhyb', 'Ah.14g088000' => 'amhyb', 'AL1G22980' => 'aly', 'AL3G18990' => 'aly', 'AL4G22440' => 'aly', 'AL4G33180' => 'aly', 'AL5G22920' => 'aly', 'AL6G33660' => 'aly', 'AL8G20720' => 'aly', 'Aqoxy1G00935' => 'aox', 'Aqoxy1G02094' => 'aox', 'Aqoxy2G01239' => 'aox', 'Aqoxy4G01870' => 'aox', 'Aqoxy7G00450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.36ZVTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71EM27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5D6C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH3WRE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3NCM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RIM768' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YB5YRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z36GDV' => 'arhy', 'AT1G08250' => 'ath', 'AT1G11790' => 'ath', 'AT2G27820' => 'ath', 'AT3G07630' => 'ath', 'AT3G44720' => 'ath', 'AT5G22630' => 'ath', 'ATR0693G304' => 'atr', 'ATR0794G109' => 'atr', 'ATR0820G120' => 'atr', 'ATR1159G064' => 'atr', 'Atru.chr10.2239' => 'acertr', 'Atru.chr3.3371' => 'acertr', 'Atru.chr6.3202' => 'acertr', 'AUR62006499' => 'cqu', 'AUR62012718' => 'cqu', 'AUR62021938' => 'cqu', 'AUR62023932' => 'cqu', 'AUR62025034' => 'cqu', 'AUR62025035' => 'cqu', 'AUR62038307' => 'cqu', 'AUR62043466' => 'cqu', 'BcaB02g10748' => 'bca', 'BcaB03g13231' => 'bca', 'BcaB03g14689' => 'bca', 'BcaB05g22716' => 'bca', 'BcaB06g28172' => 'bca', 'BcaB08g36413' => 'bca', 'BcaC01g02186' => 'bca', 'BcaC01g04272' => 'bca', 'BcaC02g08080' => 'bca', 'BcaC02g08227' => 'bca', 'BcaC03g13901' => 'bca', 'BcaC04g19593' => 'bca', 'BcaC04g20874' => 'bca', 'BcaC05g29557' => 'bca', 'BcaC06g35505' => 'bca', 'BcaC07g41954' => 'bca', 'BcaC07g41955' => 'bca', 'BcaC07g41956' => 'bca', 'BcaC07g42519' => 'bca', 'BcaC07g42520' => 'bca', 'BcaC07g42523' => 'bca', 'BcaC07g42524' => 'bca', 'BcaC07g42525' => 'bca', 'BcaC08g47480' => 'bca', 'BcaC08g47481' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00530' => 'bna', 'BolC2t07178H' => 'bol', 'BolC3t16567H' => 'bol', 'BolC4t27234H' => 'bol', 'BolC5t29728H' => 'bol', 'BolC5t34622H' => 'bol', 'BolC6t40321H' => 'bol', 'BolC7t42028H' => 'bol', 'BolC8t49125H' => 'bol', 'BolC8t52538H' => 'bol', 'BolC8t52539H' => 'bol', 'BolC9t56681H' => 'bol', 'BolC9t58266H' => 'bol', 'BolSC21t60294H' => 'bol', 'BraA02t05670Z' => 'bra', 'BraA03t12716Z' => 'bra', 'BraA04t17685Z' => 'bra', 'BraA05t22788Z' => 'bra', 'BraA06t24032Z' => 'bra', 'BraA06t25625Z' => 'bra', 'BraA07t27930Z' => 'bra', 'BraA08t35242Z' => 'bra', 'BraA09t38609Z' => 'bra', 'BraA10t43905Z' => 'bra', 'C02p11060' => 'bna', 'C03p42990' => 'bna', 'C03p67310' => 'bna', 'C04p56990' => 'bna', 'C04p58660' => 'bna', 'C05p09890' => 'bna', 'C05p59680' => 'bna', 'C06p19830' => 'bna', 'C06p53040' => 'bna', 'C07p15230' => 'bna', 'C08p50070' => 'bna', 'C08p50090' => 'bna', 'C09p38330' => 'bna', 'C09p53940' => 'bna', 'CAN.G1014.1' => 'can', 'CAN.G644.30' => 'can', 'CAN.G84.47' => 'can', 'CAN.G919.8' => 'can', 'CANSAT54G0113' => 'cansat', 'CANSAT54G1286' => 'cansat', 'CANSAT64G1020' => 'cansat', 'CARHR008080' => 'chi', 'CARHR008090' => 'chi', 'CARHR012130' => 'chi', 'CARHR038390' => 'chi', 'CARHR082330' => 'chi', 'CARHR120520' => 'chi', 'CARHR151470' => 'chi', 'CARHR190950' => 'chi', 'Carub.0001s0760' => 'cru', 'Carub.0001s1146' => 'cru', 'Carub.0003s0721' => 'cru', 'Carub.0004s0858' => 'cru', 'Carub.0005s1040' => 'cru', 'Carub.0006s2035' => 'cru', 'Carub.0015s0005' => 'cru', 'Ca_01607_v3' => 'car', 'Ca_01677_v3' => 'car', 'Ca_06087_v3' => 'car', 'Ca_19238_v3' => 'car', 'Ca_19373_v3' => 'car', 'Ca_21079_v3' => 'car', 'CBR_g54016' => 'cbr', 'CBR_g54018' => 'cbr', 'CBR_g54020' => 'cbr', 'Cc01_g09780' => 'ccan', 'Cc01_g11680' => 'ccan', 'Cc02_g15610' => 'ccan', 'Cc05_g04350' => 'ccan', 'Cc09_g01580' => 'ccan', 'CDE01G0795' => 'cde', 'CDE02G2024' => 'cde', 'CDE02G2260' => 'cde', 'CDE02G4561' => 'cde', 'CDE05G2733' => 'cde', 'CDE05G3422' => 'cde', 'CDE06G2003' => 'cde', 'CDE08G0576' => 'cde', 'CDE09G0048' => 'cde', 'CDE11G0805' => 'cde', 'Cfa003644' => 'cfa', 'Cfa006290' => 'cfa', 'Cfa010080' => 'cfa', 'Cfa011376' => 'cfa', 'Cfa011576' => 'cfa', 'Cfa011577' => 'cfa', 'Cfa014389' => 'cfa', 'Ciclev10006044m.g' => 'ccl', 'Ciclev10006954m.g' => 'ccl', 'Ciclev10015131m.g' => 'ccl', 'Ciclev10015580m.g' => 'ccl', 'Ciclev10028359m.g' => 'ccl', 'Ciclev10028573m.g' => 'ccl', 'CiPaw.03G159300' => 'cil', 'CiPaw.04G115100' => 'cil', 'CiPaw.09G092800' => 'cil', 'CiPaw.10G071800' => 'cil', 'CiPaw.13G105800' => 'cil', 'CiPaw.13G141000' => 'cil', 'CiPaw.14G103400' => 'cil', 'ClCG01G012700' => 'cla', 'ClCG01G012720' => 'cla', 'ClCG01G021920' => 'cla', 'ClCG02G008870' => 'cla', 'ClCG02G020840' => 'cla', 'ClCG02G021930' => 'cla', 'COL.COLO4_19302' => 'col', 'COL.COLO4_25262' => 'col', 'COL.COLO4_31788' => 'col', 'Cpa.g.c34684' => 'cpa', 'Cpa.g.c36520.1' => 'cpa', 'Cpa.g.c45626' => 'cpa', 'Cpa.g.sc121.17' => 'cpa', 'Cpa.g.sc13.22' => 'cpa', 'Cpa.g.sc87.88' => 'cpa', 'Cre06.g261800' => 'cre', 'CsaV3_1G014500' => 'csa', 'CsaV3_1G014510' => 'csa', 'CsaV3_2G034880' => 'csa', 'CsaV3_6G014760' => 'csa', 'CsaV3_6G021500' => 'csa', 'CsaV3_6G048980' => 'csa', 'CSS0002511' => 'camsi', 'CSS0007556' => 'camsi', 'CSS0008532' => 'camsi', 'CSS0009709' => 'camsi', 'CSS0010486' => 'camsi', 'CSS0016768' => 'camsi', 'CSS0023512' => 'camsi', 'CSS0025341' => 'camsi', 'CSS0027999' => 'camsi', 'CSS0028944' => 'camsi', 'CSS0032292' => 'camsi', 'CSS0032464' => 'camsi', 'CSS0037153' => 'camsi', 'CSS0039256' => 'camsi', 'CSS0048392' => 'camsi', 'CSS0050458' => 'camsi', 'DCAR_004224' => 'dca', 'DCAR_006147' => 'dca', 'DCAR_006465' => 'dca', 'DCAR_008159' => 'dca', 'DCAR_012164' => 'dca', 'DCAR_019764' => 'dca', 'Dinv05418' => 'din', 'Dinv10839' => 'din', 'Dinv12521' => 'din', 'Dinv13900' => 'din', 'Dinv29426' => 'din', 'Duzib150G0263' => 'dzi', 'Duzib168G1178' => 'dzi', 'Duzib168G1924' => 'dzi', 'Duzib170G0299' => 'dzi', 'Duzib170G0813' => 'dzi', 'Duzib235G1128' => 'dzi', 'Duzib248G1060' => 'dzi', 'ECA232G1910' => 'eca', 'ECA233G4621' => 'eca', 'ECA238G1216' => 'eca', 'ECA238G1784' => 'eca', 'ECA248G1242' => 'eca', 'EL10Ac8g20071' => 'bvu', 'EL10Ac9g21086' => 'bvu', 'EL10Ac9g22407' => 'bvu', 'EL10Ac9g22412' => 'bvu', 'Eucgr.A01119' => 'egr', 'Eucgr.E04043' => 'egr', 'Eucgr.J00428' => 'egr', 'Eucgr.J00958' => 'egr', 'FAN11G3091' => 'fan', 'FAN11G3651' => 'fan', 'FAN16G2566' => 'fan', 'FAN21G3155' => 'fan', 'FAN21G3400' => 'fan', 'FAN21G3543' => 'fan', 'FAN25G0234' => 'fan', 'FAN25G1422' => 'fan', 'FAN25G3392' => 'fan', 'FvH4_3g01940' => 'fve', 'FvH4_3g29870' => 'fve', 'FvH4_3g33680' => 'fve', 'Glyma.09G004200' => 'gma', 'Glyma.11G151288' => 'gma', 'Glyma.11G189100' => 'gma', 'Glyma.12G072500' => 'gma', 'Glyma.12G085500' => 'gma', 'Glyma.12G181800' => 'gma', 'Glyma.12G193000' => 'gma', 'Glyma.13G309300' => 'gma', 'Glyma.13G319000' => 'gma', 'Glyma.17G012600' => 'gma', 'Gohir.A06G148600' => 'ghi', 'Gohir.A07G115800' => 'ghi', 'Gohir.A08G003600' => 'ghi', 'Gohir.A09G093300' => 'ghi', 'Gohir.A09G105400' => 'ghi', 'Gohir.A09G105500' => 'ghi', 'Gohir.D06G154600' => 'ghi', 'Gohir.D07G120200' => 'ghi', 'Gohir.D08G013900' => 'ghi', 'Gohir.D09G093100' => 'ghi', 'Gohir.D09G102200' => 'ghi', 'Gohir.D09G102300' => 'ghi', 'Gorai.001G129400' => 'gra', 'Gorai.004G008200' => 'gra', 'Gorai.006G109800' => 'gra', 'Gorai.006G119500' => 'gra', 'Gorai.006G121300' => 'gra', 'Gorai.010G180700' => 'gra', 'GSVIVG01012716001' => 'vvi', 'GSVIVG01025118001' => 'vvi', 'GSVIVG01030439001' => 'vvi', 'GSVIVG01031397001' => 'vvi', 'HanXRQChr01g0004201' => 'han', 'HanXRQChr02g0054941' => 'han', 'HanXRQChr05g0141811' => 'han', 'HanXRQChr07g0197751' => 'han', 'HanXRQChr11g0346691' => 'han', 'HanXRQChr13g0396971' => 'han', 'HanXRQChr14g0432951' => 'han', 'HanXRQChr14g0452001' => 'han', 'HanXRQChr15g0496681' => 'han', 'HanXRQChr17g0557491' => 'han', 'HanXRQChr17g0557501' => 'han', 'Haze_06809' => 'cav', 'Haze_12852' => 'cav', 'Haze_15850' => 'cav', 'Haze_23446' => 'cav', 'Haze_23942' => 'cav', 'Haze_23943' => 'cav', 'Hma1.2p1_0091F.1_g046450' => 'hma', 'Hma1.2p1_0128F.1_g059910' => 'hma', 'Hma1.2p1_0249F.1_g102260' => 'hma', 'Hma1.2p1_0453F.1_g156190' => 'hma', 'Hma1.2p1_0695F.1_g204380' => 'hma', 'Hma1.2p1_0749F.1_g212650' => 'hma', 'Hma1.2p1_2156F.1_g315420' => 'hma', 'Hma1.2p1_2686F.1_g326940' => 'hma', 'HPP92_006428' => 'vpl', 'HPP92_012069' => 'vpl', 'HPP92_014129' => 'vpl', 'HPP92_014133' => 'vpl', 'HPP92_017315' => 'vpl', 'HPP92_026445' => 'vpl', 'HPP92_026446' => 'vpl', 'Hund00774' => 'sun', 'Hund07682' => 'sun', 'Hund21413' => 'sun', 'Hund23462' => 'sun', 'Hund23463' => 'sun', 'Lalb_Chr03g0027911' => 'lal', 'Lalb_Chr13g0304271' => 'lal', 'Lalb_Chr19g0137471' => 'lal', 'Lalb_Chr22g0350651' => 'lal', 'Lalb_Chr24g0395151' => 'lal', 'Lj1A1231T40' => 'lonja', 'Lj1A221T48' => 'lonja', 'Lj1C924T12' => 'lonja', 'Lj2C993G6' => 'lonja', 'Lj3g0005790' => 'lja', 'Lj3g0015432' => 'lja', 'Lj3g0017722' => 'lja', 'Lj3g0018497' => 'lja', 'Lj4g0025071' => 'lja', 'Lsat_1_v5_gn_1_129680' => 'lsa', 'Lsat_1_v5_gn_2_25321' => 'lsa', 'Lsat_1_v5_gn_2_95461' => 'lsa', 'Lsat_1_v5_gn_4_159620' => 'lsa', 'Lsat_1_v5_gn_6_41301' => 'lsa', 'Lsat_1_v5_gn_6_74660' => 'lsa', 'Lsat_1_v5_gn_7_11520' => 'lsa', 'Lsat_1_v5_gn_9_67680' => 'lsa', 'Manes.04G008300' => 'mes', 'Manes.04G008400' => 'mes', 'Manes.04G026500' => 'mes', 'Manes.10G135300' => 'mes', 'Manes.11G157300' => 'mes', 'Manes.12G074000' => 'mes', 'Manes.16G006200' => 'mes', 'Manes.17G026400' => 'mes', 'Mapoly0024s0086' => 'mpo', 'Mapoly0024s0087' => 'mpo', 'Mapoly0071s0057' => 'mpo', 'Mapoly0204s0012' => 'mpo', 'MBI04_g37681_MAGBIO' => 'mbi', 'MBI05_g17779_MAGBIO' => 'mbi', 'MBI12_g31184_MAGBIO' => 'mbi', 'MBI17_g11083_MAGBIO' => 'mbi', 'MBI18_g03883_MAGBIO' => 'mbi', 'MBI18_g28940_MAGBIO' => 'mbi', 'MCO01G690' => 'mco', 'MD03G1109900' => 'mdo', 'MD03G1134800' => 'mdo', 'MD05G1348000' => 'mdo', 'MD10G1322400' => 'mdo', 'MD11G1123300' => 'mdo', 'MD11G1157600' => 'mdo', 'Medtr2g084875' => 'mtr', 'Medtr2g088130' => 'mtr', 'Medtr4g055310' => 'mtr', 'Medtr4g061070' => 'mtr', 'Medtr4g132250' => 'mtr', 'MELO3C004795.2' => 'cme', 'MELO3C004797.2' => 'cme', 'MELO3C007396.2' => 'cme', 'MELO3C019277.2' => 'cme', 'MELO3C021449.2' => 'cme', 'MELO3C025736.2' => 'cme', 'Migut.D02175' => 'egut', 'Migut.H01573' => 'egut', 'Migut.M01327' => 'egut', 'Migut.N02513' => 'egut', 'MSTRG.14638' => 'ama', 'MSTRG.18632' => 'ama', 'MSTRG.7203' => 'ama', 'Nitab4.5_0000533g0140' => 'nta', 'Nitab4.5_0000888g0150' => 'nta', 'Nitab4.5_0001453g0040' => 'nta', 'Nitab4.5_0002827g0090' => 'nta', 'Nitab4.5_0003082g0040' => 'nta', 'Nitab4.5_0007799g0040' => 'nta', 'Nitab4.5_0008983g0010' => 'nta', 'Nitab4.5_0009017g0020' => 'nta', 'Nn1g02132' => 'nnu', 'Nn1g03492' => 'nnu', 'Nn1g03493' => 'nnu', 'Nn1g03494' => 'nnu', 'Nn1g07164' => 'nnu', 'Nn1g07291' => 'nnu', 'Nn2g10655' => 'nnu', 'Nn2g11652' => 'nnu', 'Nn2g14008' => 'nnu', 'Nn3g17476' => 'nnu', 'Nn3g17477' => 'nnu', 'Nn4g22370' => 'nnu', 'Nn4g25255' => 'nnu', 'Nn5g27755' => 'nnu', 'Nn6g34260' => 'nnu', 'Nn6g35041' => 'nnu', 'Oeu005924.1' => 'oeu', 'Oeu008383.1' => 'oeu', 'Oeu014928.1' => 'oeu', 'Oeu019889.1' => 'oeu', 'Oeu022271.1' => 'oeu', 'Oeu025271.1' => 'oeu', 'Oeu036302.1' => 'oeu', 'Oeu044100.1' => 'oeu', 'Os01g0528300' => 'osa', 'Os03g0286200' => 'osa', 'Os04g0406600' => 'osa', 'Os07g0512000' => 'osa', 'Os07g0694600' => 'osa', 'Os08g0411000' => 'osa', 'Os09g0565700' => 'osa', 'Os09g0566050' => 'osa', 'Os10g0523700' => 'osa', 'Peaxi162Scf00002g00514' => 'pax', 'Peaxi162Scf00047g01817' => 'pax', 'Peaxi162Scf00114g00001' => 'pax', 'Peaxi162Scf00147g00613' => 'pax', 'Peaxi162Scf00389g00425' => 'pax', 'PGR042G1139' => 'pgr', 'PGR042G3273' => 'pgr', 'PGR102G2180' => 'pgr', 'PGR119G0234' => 'pgr', 'PGR119G0668' => 'pgr', 'PGSC0003DMG400007122' => 'stu', 'PGSC0003DMG400016478' => 'stu', 'PGSC0003DMG400025374' => 'stu', 'PGSC0003DMG400026536' => 'stu', 'Phvul.003G079600' => 'pvu', 'Phvul.005G115600' => 'pvu', 'Phvul.005G127100' => 'pvu', 'Phvul.006G149500' => 'pvu', 'Phvul.006G149600' => 'pvu', 'Phvul.011G071800' => 'pvu', 'Phvul.011G090400' => 'pvu', 'Potri.004G013400' => 'ptr', 'Potri.004G188100' => 'ptr', 'Potri.008G195500' => 'ptr', 'Potri.009G148800' => 'ptr', 'Potri.011G004700' => 'ptr', 'Pp3c17_22810' => 'ppa', 'Pp3c18_4480' => 'ppa', 'Pp3c19_13030' => 'ppa', 'Pp3c1_33620' => 'ppa', 'Pp3c2_9380' => 'ppa', 'PRCOL_00001023' => 'pco', 'Prupe.3G216300' => 'ppe', 'Prupe.4G019500' => 'ppe', 'Prupe.6G092500' => 'ppe', 'Prupe.6G119200' => 'ppe', 'Psat0s1945g0080' => 'psa', 'Psat0s4167g0040' => 'psa', 'Psat1g185800' => 'psa', 'Psat4g006440' => 'psa', 'Psat4g006480' => 'psa', 'Psat4g168120' => 'psa', 'Psat5g255680' => 'psa', 'Psat5g261760' => 'psa', 'Psat7g222120' => 'psa', 'PSO063G7252' => 'pso', 'PSO170G4778' => 'pso', 'PSO210G2249' => 'pso', 'PSO339G2411' => 'pso', 'PSO339G2457' => 'pso', 'PSO339G2854' => 'pso', 'PSO339G4288' => 'pso', 'PSO339G4615' => 'pso', 'PSO384G2796' => 'pso', 'PSO384G2940' => 'pso', 'PSO384G4227' => 'pso', 'PSO478G1425' => 'pso', 'PSO541G3863' => 'pso', 'PSO675G0507' => 'pso', 'PSO782G0338' => 'pso', 'PSO832G0644' => 'pso', 'QL01p013664' => 'qlo', 'QL01p036598' => 'qlo', 'QL05p072984' => 'qlo', 'QL08p005768' => 'qlo', 'QL08p032743' => 'qlo', 'QL93p0073_0439' => 'qlo', 'QL93p0073_0444' => 'qlo', 'RcHm_v2.0_Chr5g0002851' => 'rch', 'RcHm_v2.0_Chr5g0055201' => 'rch', 'RcHm_v2.0_Chr5g0061191' => 'rch', 'RcHm_v2.0_Chr7g0203231' => 'rch', 'Rhsim01G0208100' => 'rsi', 'Rhsim01G0208200' => 'rsi', 'Rhsim02G0106500' => 'rsi', 'Rhsim03G0107900' => 'rsi', 'Rhsim06G0163400' => 'rsi', 'Rhsim13G0105200' => 'rsi', 'Sabra04G0006300' => 'sbr', 'Sabra04G0127000' => 'sbr', 'Sabra08G0148700' => 'sbr', 'Sabra09G0117400' => 'sbr', 'SalBow1G3326' => 'sbo', 'SalBow3G3228' => 'sbo', 'SalBow6G1634' => 'sbo', 'SalBow6G3603' => 'sbo', 'SalBow6G5266' => 'sbo', 'SalBow7G2265' => 'sbo', 'SalBow8G0850' => 'sbo', 'SalBow8G2592' => 'sbo', 'Sc05g0009240' => 'sci', 'Sc12g0002300' => 'sci', 'Sc21g0000100' => 'sci', 'Sc21g0004720' => 'sci', 'Sed0002949' => 'sed', 'Sed0004114' => 'sed', 'Sed0004306' => 'sed', 'Sed0006172' => 'sed', 'Sed0008413' => 'sed', 'Sed0013809' => 'sed', 'Sed0019556' => 'sed', 'SEGI_03570' => 'sgi', 'SEGI_07859' => 'sgi', 'SEGI_15042' => 'sgi', 'SEGI_16263' => 'sgi', 'SEGI_16552' => 'sgi', 'SEGI_24331' => 'sgi', 'SEGI_27316' => 'sgi', 'SEGI_29521' => 'sgi', 'SEGI_41342' => 'sgi', 'SGA_v2.0_scaffold27G11617' => 'sas', 'SGA_v2.0_scaffold316G48428' => 'sas', 'SGA_v2.0_scaffold49G18261' => 'sas', 'SGA_v2.0_scaffold7G03831' => 'sas', 'SGA_v2.0_scaffold93G28359' => 'sas', 'SHI02210' => 'shi', 'SHI06028' => 'shi', 'SHI06321' => 'shi', 'SMO111G0012' => 'smo', 'SMO228G0080' => 'smo', 'SMO356G0756' => 'smo', 'Solyc02g080620.3' => 'sly', 'Solyc06g074530.1' => 'sly', 'Solyc11g066890.1' => 'sly', 'Solyc11g072520.3' => 'sly', 'Sopen02g025330' => 'spe', 'Sopen06g031000' => 'spe', 'Sopen09g008240' => 'spe', 'Sopen09g025210' => 'spe', 'Sopen11g026600' => 'spe', 'Sopen11g030170' => 'spe', 'Sp1g10420' => 'spa', 'Sp3g06570' => 'spa', 'Sp4g10660' => 'spa', 'Sp5g16460' => 'spa', 'Sp6g22710' => 'spa', 'TAR365G0112' => 'tar', 'TAR369G0717' => 'tar', 'TAR374G0976' => 'tar', 'TAR623G1128' => 'tar', 'TAR626G1937' => 'tar', 'TAR627G0123' => 'tar', 'TAR628G0305' => 'tar', 'TAR636G1176' => 'tar', 'TAR636G2442' => 'tar', 'THA.LOC104800556' => 'tha', 'THA.LOC104809501' => 'tha', 'THA.LOC104815126' => 'tha', 'THA.LOC104815732' => 'tha', 'THA.LOC104823528' => 'tha', 'Thecc.02G365600' => 'tca', 'Thecc.06G222300' => 'tca', 'Thecc.09G261800' => 'tca', 'Thecc.09G291400' => 'tca', 'Thhalv10003028m.g' => 'esa', 'Thhalv10007886m.g' => 'esa', 'Thhalv10016085m.g' => 'esa', 'Thhalv10016681m.g' => 'esa', 'Thhalv10020951m.g' => 'esa', 'TPR.G15598' => 'tpr', 'TPR.G29305' => 'tpr', 'TPR.G32395' => 'tpr', 'TPR.G36998' => 'tpr', 'TPR.G4227' => 'tpr', 'TWI18G1433' => 'twi', 'TWI31G0755' => 'twi', 'TWI38G0912' => 'twi', 'TWI75G1097' => 'twi', 'TWI75G1619' => 'twi', 'TWI79G1336' => 'twi', 'unitig_0.g943' => 'ugi', 'unitig_0.g944' => 'ugi', 'unitig_22.g6646' => 'ugi', 'unitig_37.g12681' => 'ugi', 'unitig_8.g3290' => 'ugi', 'vmacro03278' => 'vma', 'vmacro12197' => 'vma', 'vmacro14478' => 'vma', 'vmacro15787' => 'vma', 'vmacro15789' => 'vma', 'vmacro15790' => 'vma', 'vmacro15806' => 'vma', 'vmacro22907' => 'vma', 'vmacro22908' => 'vma', 'vmacro22909' => 'vma', 'vmacro23108' => 'vma', 'VMungo0540G0540' => 'vmu', 'VMungo0540G2468' => 'vmu', 'VMungo1080G0390' => 'vmu', 'VMungo1080G1165' => 'vmu', 'VMungo1127G0170' => 'vmu', 'VMungo1127G2099' => 'vmu', 'VMungo1215G3013' => 'vmu', 'Zm00001eb013110' => 'zma', 'Zm00001eb084260' => 'zma', 'Zm00001eb096110' => 'zma', 'Zm00001eb217510' => 'zma', 'Zm00001eb322550' => 'zma', 'Zm00001eb390770' => 'zma', 'Zm00001eb397170' => 'zma', 'Zm00001eb404610' => 'zma', 'Zm00001eb421790' => 'zma' ), 'gf_id' => 'HOM05D000911', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000911' ), 'data_identifier' => 'HOM05D000911', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000911', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27780' => 'bna', 'A03p35380' => 'bna', 'A04p21160' => 'bna', 'A05p40570' => 'bna', 'A06p26900' => 'bna', 'A08p33230' => 'bna', 'A09p65960' => 'bna', 'A10p18290' => 'bna', 'Aa31LG1G12990' => 'aar', 'Aa31LG1G2980' => 'aar', 'Aa31LG4G14320' => 'aar', 'Aa31LG7G11800' => 'aar', 'Aa31sc36G50' => 'aar', 'Aa31sc36G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3721' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5459' => 'aag', 'Actinidia03028' => 'ach', 'Actinidia03753' => 'ach', 'Actinidia04187' => 'ach', 'Actinidia05509' => 'ach', 'Actinidia24180' => 'ach', 'Actinidia26906' => 'ach', 'Actinidia37097' => 'ach', 'Actinidia38249' => 'ach', 'Ah.01g003470' => 'amhyb', 'Ah.01g004580' => 'amhyb', 'Ah.01g014850' => 'amhyb', 'Ah.01g016830' => 'amhyb', 'Ah.14g088000' => 'amhyb', 'AL1G22980' => 'aly', 'AL3G18990' => 'aly', 'AL4G22440' => 'aly', 'AL4G33180' => 'aly', 'AL5G22920' => 'aly', 'AL6G33660' => 'aly', 'AL8G20720' => 'aly', 'Aqoxy1G00935' => 'aox', 'Aqoxy1G02094' => 'aox', 'Aqoxy2G01239' => 'aox', 'Aqoxy4G01870' => 'aox', 'Aqoxy7G00450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.36ZVTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71EM27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5D6C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH3WRE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3NCM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RIM768' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YB5YRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z36GDV' => 'arhy', 'AT1G08250' => 'ath', 'AT1G11790' => 'ath', 'AT2G27820' => 'ath', 'AT3G07630' => 'ath', 'AT3G44720' => 'ath', 'AT5G22630' => 'ath', 'ATR0693G304' => 'atr', 'ATR0794G109' => 'atr', 'ATR0820G120' => 'atr', 'ATR1159G064' => 'atr', 'Atru.chr10.2239' => 'acertr', 'Atru.chr3.3371' => 'acertr', 'Atru.chr6.3202' => 'acertr', 'AUR62006499' => 'cqu', 'AUR62012718' => 'cqu', 'AUR62021938' => 'cqu', 'AUR62023932' => 'cqu', 'AUR62025034' => 'cqu', 'AUR62025035' => 'cqu', 'AUR62038307' => 'cqu', 'AUR62043466' => 'cqu', 'BcaB02g10748' => 'bca', 'BcaB03g13231' => 'bca', 'BcaB03g14689' => 'bca', 'BcaB05g22716' => 'bca', 'BcaB06g28172' => 'bca', 'BcaB08g36413' => 'bca', 'BcaC01g02186' => 'bca', 'BcaC01g04272' => 'bca', 'BcaC02g08080' => 'bca', 'BcaC02g08227' => 'bca', 'BcaC03g13901' => 'bca', 'BcaC04g19593' => 'bca', 'BcaC04g20874' => 'bca', 'BcaC05g29557' => 'bca', 'BcaC06g35505' => 'bca', 'BcaC07g41954' => 'bca', 'BcaC07g41955' => 'bca', 'BcaC07g41956' => 'bca', 'BcaC07g42519' => 'bca', 'BcaC07g42520' => 'bca', 'BcaC07g42523' => 'bca', 'BcaC07g42524' => 'bca', 'BcaC07g42525' => 'bca', 'BcaC08g47480' => 'bca', 'BcaC08g47481' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00530' => 'bna', 'BolC2t07178H' => 'bol', 'BolC3t16567H' => 'bol', 'BolC4t27234H' => 'bol', 'BolC5t29728H' => 'bol', 'BolC5t34622H' => 'bol', 'BolC6t40321H' => 'bol', 'BolC7t42028H' => 'bol', 'BolC8t49125H' => 'bol', 'BolC8t52538H' => 'bol', 'BolC8t52539H' => 'bol', 'BolC9t56681H' => 'bol', 'BolC9t58266H' => 'bol', 'BolSC21t60294H' => 'bol', 'BraA02t05670Z' => 'bra', 'BraA03t12716Z' => 'bra', 'BraA04t17685Z' => 'bra', 'BraA05t22788Z' => 'bra', 'BraA06t24032Z' => 'bra', 'BraA06t25625Z' => 'bra', 'BraA07t27930Z' => 'bra', 'BraA08t35242Z' => 'bra', 'BraA09t38609Z' => 'bra', 'BraA10t43905Z' => 'bra', 'C02p11060' => 'bna', 'C03p42990' => 'bna', 'C03p67310' => 'bna', 'C04p56990' => 'bna', 'C04p58660' => 'bna', 'C05p09890' => 'bna', 'C05p59680' => 'bna', 'C06p19830' => 'bna', 'C06p53040' => 'bna', 'C07p15230' => 'bna', 'C08p50070' => 'bna', 'C08p50090' => 'bna', 'C09p38330' => 'bna', 'C09p53940' => 'bna', 'CAN.G1014.1' => 'can', 'CAN.G644.30' => 'can', 'CAN.G84.47' => 'can', 'CAN.G919.8' => 'can', 'CANSAT54G0113' => 'cansat', 'CANSAT54G1286' => 'cansat', 'CANSAT64G1020' => 'cansat', 'CARHR008080' => 'chi', 'CARHR008090' => 'chi', 'CARHR012130' => 'chi', 'CARHR038390' => 'chi', 'CARHR082330' => 'chi', 'CARHR120520' => 'chi', 'CARHR151470' => 'chi', 'CARHR190950' => 'chi', 'Carub.0001s0760' => 'cru', 'Carub.0001s1146' => 'cru', 'Carub.0003s0721' => 'cru', 'Carub.0004s0858' => 'cru', 'Carub.0005s1040' => 'cru', 'Carub.0006s2035' => 'cru', 'Carub.0015s0005' => 'cru', 'Ca_01607_v3' => 'car', 'Ca_01677_v3' => 'car', 'Ca_06087_v3' => 'car', 'Ca_19238_v3' => 'car', 'Ca_19373_v3' => 'car', 'Ca_21079_v3' => 'car', 'CBR_g54016' => 'cbr', 'CBR_g54018' => 'cbr', 'CBR_g54020' => 'cbr', 'Cc01_g09780' => 'ccan', 'Cc01_g11680' => 'ccan', 'Cc02_g15610' => 'ccan', 'Cc05_g04350' => 'ccan', 'Cc09_g01580' => 'ccan', 'CDE01G0795' => 'cde', 'CDE02G2024' => 'cde', 'CDE02G2260' => 'cde', 'CDE02G4561' => 'cde', 'CDE05G2733' => 'cde', 'CDE05G3422' => 'cde', 'CDE06G2003' => 'cde', 'CDE08G0576' => 'cde', 'CDE09G0048' => 'cde', 'CDE11G0805' => 'cde', 'Cfa003644' => 'cfa', 'Cfa006290' => 'cfa', 'Cfa010080' => 'cfa', 'Cfa011376' => 'cfa', 'Cfa011576' => 'cfa', 'Cfa011577' => 'cfa', 'Cfa014389' => 'cfa', 'Ciclev10006044m.g' => 'ccl', 'Ciclev10006954m.g' => 'ccl', 'Ciclev10015131m.g' => 'ccl', 'Ciclev10015580m.g' => 'ccl', 'Ciclev10028359m.g' => 'ccl', 'Ciclev10028573m.g' => 'ccl', 'CiPaw.03G159300' => 'cil', 'CiPaw.04G115100' => 'cil', 'CiPaw.09G092800' => 'cil', 'CiPaw.10G071800' => 'cil', 'CiPaw.13G105800' => 'cil', 'CiPaw.13G141000' => 'cil', 'CiPaw.14G103400' => 'cil', 'ClCG01G012700' => 'cla', 'ClCG01G012720' => 'cla', 'ClCG01G021920' => 'cla', 'ClCG02G008870' => 'cla', 'ClCG02G020840' => 'cla', 'ClCG02G021930' => 'cla', 'COL.COLO4_19302' => 'col', 'COL.COLO4_25262' => 'col', 'COL.COLO4_31788' => 'col', 'Cpa.g.c34684' => 'cpa', 'Cpa.g.c36520.1' => 'cpa', 'Cpa.g.c45626' => 'cpa', 'Cpa.g.sc121.17' => 'cpa', 'Cpa.g.sc13.22' => 'cpa', 'Cpa.g.sc87.88' => 'cpa', 'Cre06.g261800' => 'cre', 'CsaV3_1G014500' => 'csa', 'CsaV3_1G014510' => 'csa', 'CsaV3_2G034880' => 'csa', 'CsaV3_6G014760' => 'csa', 'CsaV3_6G021500' => 'csa', 'CsaV3_6G048980' => 'csa', 'CSS0002511' => 'camsi', 'CSS0007556' => 'camsi', 'CSS0008532' => 'camsi', 'CSS0009709' => 'camsi', 'CSS0010486' => 'camsi', 'CSS0016768' => 'camsi', 'CSS0023512' => 'camsi', 'CSS0025341' => 'camsi', 'CSS0027999' => 'camsi', 'CSS0028944' => 'camsi', 'CSS0032292' => 'camsi', 'CSS0032464' => 'camsi', 'CSS0037153' => 'camsi', 'CSS0039256' => 'camsi', 'CSS0048392' => 'camsi', 'CSS0050458' => 'camsi', 'DCAR_004224' => 'dca', 'DCAR_006147' => 'dca', 'DCAR_006465' => 'dca', 'DCAR_008159' => 'dca', 'DCAR_012164' => 'dca', 'DCAR_019764' => 'dca', 'Dinv05418' => 'din', 'Dinv10839' => 'din', 'Dinv12521' => 'din', 'Dinv13900' => 'din', 'Dinv29426' => 'din', 'Duzib150G0263' => 'dzi', 'Duzib168G1178' => 'dzi', 'Duzib168G1924' => 'dzi', 'Duzib170G0299' => 'dzi', 'Duzib170G0813' => 'dzi', 'Duzib235G1128' => 'dzi', 'Duzib248G1060' => 'dzi', 'ECA232G1910' => 'eca', 'ECA233G4621' => 'eca', 'ECA238G1216' => 'eca', 'ECA238G1784' => 'eca', 'ECA248G1242' => 'eca', 'EL10Ac8g20071' => 'bvu', 'EL10Ac9g21086' => 'bvu', 'EL10Ac9g22407' => 'bvu', 'EL10Ac9g22412' => 'bvu', 'Eucgr.A01119' => 'egr', 'Eucgr.E04043' => 'egr', 'Eucgr.J00428' => 'egr', 'Eucgr.J00958' => 'egr', 'FAN11G3091' => 'fan', 'FAN11G3651' => 'fan', 'FAN16G2566' => 'fan', 'FAN21G3155' => 'fan', 'FAN21G3400' => 'fan', 'FAN21G3543' => 'fan', 'FAN25G0234' => 'fan', 'FAN25G1422' => 'fan', 'FAN25G3392' => 'fan', 'FvH4_3g01940' => 'fve', 'FvH4_3g29870' => 'fve', 'FvH4_3g33680' => 'fve', 'Glyma.09G004200' => 'gma', 'Glyma.11G151288' => 'gma', 'Glyma.11G189100' => 'gma', 'Glyma.12G072500' => 'gma', 'Glyma.12G085500' => 'gma', 'Glyma.12G181800' => 'gma', 'Glyma.12G193000' => 'gma', 'Glyma.13G309300' => 'gma', 'Glyma.13G319000' => 'gma', 'Glyma.17G012600' => 'gma', 'Gohir.A06G148600' => 'ghi', 'Gohir.A07G115800' => 'ghi', 'Gohir.A08G003600' => 'ghi', 'Gohir.A09G093300' => 'ghi', 'Gohir.A09G105400' => 'ghi', 'Gohir.A09G105500' => 'ghi', 'Gohir.D06G154600' => 'ghi', 'Gohir.D07G120200' => 'ghi', 'Gohir.D08G013900' => 'ghi', 'Gohir.D09G093100' => 'ghi', 'Gohir.D09G102200' => 'ghi', 'Gohir.D09G102300' => 'ghi', 'Gorai.001G129400' => 'gra', 'Gorai.004G008200' => 'gra', 'Gorai.006G109800' => 'gra', 'Gorai.006G119500' => 'gra', 'Gorai.006G121300' => 'gra', 'Gorai.010G180700' => 'gra', 'GSVIVG01012716001' => 'vvi', 'GSVIVG01025118001' => 'vvi', 'GSVIVG01030439001' => 'vvi', 'GSVIVG01031397001' => 'vvi', 'HanXRQChr01g0004201' => 'han', 'HanXRQChr02g0054941' => 'han', 'HanXRQChr05g0141811' => 'han', 'HanXRQChr07g0197751' => 'han', 'HanXRQChr11g0346691' => 'han', 'HanXRQChr13g0396971' => 'han', 'HanXRQChr14g0432951' => 'han', 'HanXRQChr14g0452001' => 'han', 'HanXRQChr15g0496681' => 'han', 'HanXRQChr17g0557491' => 'han', 'HanXRQChr17g0557501' => 'han', 'Haze_06809' => 'cav', 'Haze_12852' => 'cav', 'Haze_15850' => 'cav', 'Haze_23446' => 'cav', 'Haze_23942' => 'cav', 'Haze_23943' => 'cav', 'Hma1.2p1_0091F.1_g046450' => 'hma', 'Hma1.2p1_0128F.1_g059910' => 'hma', 'Hma1.2p1_0249F.1_g102260' => 'hma', 'Hma1.2p1_0453F.1_g156190' => 'hma', 'Hma1.2p1_0695F.1_g204380' => 'hma', 'Hma1.2p1_0749F.1_g212650' => 'hma', 'Hma1.2p1_2156F.1_g315420' => 'hma', 'Hma1.2p1_2686F.1_g326940' => 'hma', 'HPP92_006428' => 'vpl', 'HPP92_012069' => 'vpl', 'HPP92_014129' => 'vpl', 'HPP92_014133' => 'vpl', 'HPP92_017315' => 'vpl', 'HPP92_026445' => 'vpl', 'HPP92_026446' => 'vpl', 'Hund00774' => 'sun', 'Hund07682' => 'sun', 'Hund21413' => 'sun', 'Hund23462' => 'sun', 'Hund23463' => 'sun', 'Lalb_Chr03g0027911' => 'lal', 'Lalb_Chr13g0304271' => 'lal', 'Lalb_Chr19g0137471' => 'lal', 'Lalb_Chr22g0350651' => 'lal', 'Lalb_Chr24g0395151' => 'lal', 'Lj1A1231T40' => 'lonja', 'Lj1A221T48' => 'lonja', 'Lj1C924T12' => 'lonja', 'Lj2C993G6' => 'lonja', 'Lj3g0005790' => 'lja', 'Lj3g0015432' => 'lja', 'Lj3g0017722' => 'lja', 'Lj3g0018497' => 'lja', 'Lj4g0025071' => 'lja', 'Lsat_1_v5_gn_1_129680' => 'lsa', 'Lsat_1_v5_gn_2_25321' => 'lsa', 'Lsat_1_v5_gn_2_95461' => 'lsa', 'Lsat_1_v5_gn_4_159620' => 'lsa', 'Lsat_1_v5_gn_6_41301' => 'lsa', 'Lsat_1_v5_gn_6_74660' => 'lsa', 'Lsat_1_v5_gn_7_11520' => 'lsa', 'Lsat_1_v5_gn_9_67680' => 'lsa', 'Manes.04G008300' => 'mes', 'Manes.04G008400' => 'mes', 'Manes.04G026500' => 'mes', 'Manes.10G135300' => 'mes', 'Manes.11G157300' => 'mes', 'Manes.12G074000' => 'mes', 'Manes.16G006200' => 'mes', 'Manes.17G026400' => 'mes', 'Mapoly0024s0086' => 'mpo', 'Mapoly0024s0087' => 'mpo', 'Mapoly0071s0057' => 'mpo', 'Mapoly0204s0012' => 'mpo', 'MBI04_g37681_MAGBIO' => 'mbi', 'MBI05_g17779_MAGBIO' => 'mbi', 'MBI12_g31184_MAGBIO' => 'mbi', 'MBI17_g11083_MAGBIO' => 'mbi', 'MBI18_g03883_MAGBIO' => 'mbi', 'MBI18_g28940_MAGBIO' => 'mbi', 'MCO01G690' => 'mco', 'MD03G1109900' => 'mdo', 'MD03G1134800' => 'mdo', 'MD05G1348000' => 'mdo', 'MD10G1322400' => 'mdo', 'MD11G1123300' => 'mdo', 'MD11G1157600' => 'mdo', 'Medtr2g084875' => 'mtr', 'Medtr2g088130' => 'mtr', 'Medtr4g055310' => 'mtr', 'Medtr4g061070' => 'mtr', 'Medtr4g132250' => 'mtr', 'MELO3C004795.2' => 'cme', 'MELO3C004797.2' => 'cme', 'MELO3C007396.2' => 'cme', 'MELO3C019277.2' => 'cme', 'MELO3C021449.2' => 'cme', 'MELO3C025736.2' => 'cme', 'Migut.D02175' => 'egut', 'Migut.H01573' => 'egut', 'Migut.M01327' => 'egut', 'Migut.N02513' => 'egut', 'MSTRG.14638' => 'ama', 'MSTRG.18632' => 'ama', 'MSTRG.7203' => 'ama', 'Nitab4.5_0000533g0140' => 'nta', 'Nitab4.5_0000888g0150' => 'nta', 'Nitab4.5_0001453g0040' => 'nta', 'Nitab4.5_0002827g0090' => 'nta', 'Nitab4.5_0003082g0040' => 'nta', 'Nitab4.5_0007799g0040' => 'nta', 'Nitab4.5_0008983g0010' => 'nta', 'Nitab4.5_0009017g0020' => 'nta', 'Nn1g02132' => 'nnu', 'Nn1g03492' => 'nnu', 'Nn1g03493' => 'nnu', 'Nn1g03494' => 'nnu', 'Nn1g07164' => 'nnu', 'Nn1g07291' => 'nnu', 'Nn2g10655' => 'nnu', 'Nn2g11652' => 'nnu', 'Nn2g14008' => 'nnu', 'Nn3g17476' => 'nnu', 'Nn3g17477' => 'nnu', 'Nn4g22370' => 'nnu', 'Nn4g25255' => 'nnu', 'Nn5g27755' => 'nnu', 'Nn6g34260' => 'nnu', 'Nn6g35041' => 'nnu', 'Oeu005924.1' => 'oeu', 'Oeu008383.1' => 'oeu', 'Oeu014928.1' => 'oeu', 'Oeu019889.1' => 'oeu', 'Oeu022271.1' => 'oeu', 'Oeu025271.1' => 'oeu', 'Oeu036302.1' => 'oeu', 'Oeu044100.1' => 'oeu', 'Os01g0528300' => 'osa', 'Os03g0286200' => 'osa', 'Os04g0406600' => 'osa', 'Os07g0512000' => 'osa', 'Os07g0694600' => 'osa', 'Os08g0411000' => 'osa', 'Os09g0565700' => 'osa', 'Os09g0566050' => 'osa', 'Os10g0523700' => 'osa', 'Peaxi162Scf00002g00514' => 'pax', 'Peaxi162Scf00047g01817' => 'pax', 'Peaxi162Scf00114g00001' => 'pax', 'Peaxi162Scf00147g00613' => 'pax', 'Peaxi162Scf00389g00425' => 'pax', 'PGR042G1139' => 'pgr', 'PGR042G3273' => 'pgr', 'PGR102G2180' => 'pgr', 'PGR119G0234' => 'pgr', 'PGR119G0668' => 'pgr', 'PGSC0003DMG400007122' => 'stu', 'PGSC0003DMG400016478' => 'stu', 'PGSC0003DMG400025374' => 'stu', 'PGSC0003DMG400026536' => 'stu', 'Phvul.003G079600' => 'pvu', 'Phvul.005G115600' => 'pvu', 'Phvul.005G127100' => 'pvu', 'Phvul.006G149500' => 'pvu', 'Phvul.006G149600' => 'pvu', 'Phvul.011G071800' => 'pvu', 'Phvul.011G090400' => 'pvu', 'Potri.004G013400' => 'ptr', 'Potri.004G188100' => 'ptr', 'Potri.008G195500' => 'ptr', 'Potri.009G148800' => 'ptr', 'Potri.011G004700' => 'ptr', 'Pp3c17_22810' => 'ppa', 'Pp3c18_4480' => 'ppa', 'Pp3c19_13030' => 'ppa', 'Pp3c1_33620' => 'ppa', 'Pp3c2_9380' => 'ppa', 'PRCOL_00001023' => 'pco', 'Prupe.3G216300' => 'ppe', 'Prupe.4G019500' => 'ppe', 'Prupe.6G092500' => 'ppe', 'Prupe.6G119200' => 'ppe', 'Psat0s1945g0080' => 'psa', 'Psat0s4167g0040' => 'psa', 'Psat1g185800' => 'psa', 'Psat4g006440' => 'psa', 'Psat4g006480' => 'psa', 'Psat4g168120' => 'psa', 'Psat5g255680' => 'psa', 'Psat5g261760' => 'psa', 'Psat7g222120' => 'psa', 'PSO063G7252' => 'pso', 'PSO170G4778' => 'pso', 'PSO210G2249' => 'pso', 'PSO339G2411' => 'pso', 'PSO339G2457' => 'pso', 'PSO339G2854' => 'pso', 'PSO339G4288' => 'pso', 'PSO339G4615' => 'pso', 'PSO384G2796' => 'pso', 'PSO384G2940' => 'pso', 'PSO384G4227' => 'pso', 'PSO478G1425' => 'pso', 'PSO541G3863' => 'pso', 'PSO675G0507' => 'pso', 'PSO782G0338' => 'pso', 'PSO832G0644' => 'pso', 'QL01p013664' => 'qlo', 'QL01p036598' => 'qlo', 'QL05p072984' => 'qlo', 'QL08p005768' => 'qlo', 'QL08p032743' => 'qlo', 'QL93p0073_0439' => 'qlo', 'QL93p0073_0444' => 'qlo', 'RcHm_v2.0_Chr5g0002851' => 'rch', 'RcHm_v2.0_Chr5g0055201' => 'rch', 'RcHm_v2.0_Chr5g0061191' => 'rch', 'RcHm_v2.0_Chr7g0203231' => 'rch', 'Rhsim01G0208100' => 'rsi', 'Rhsim01G0208200' => 'rsi', 'Rhsim02G0106500' => 'rsi', 'Rhsim03G0107900' => 'rsi', 'Rhsim06G0163400' => 'rsi', 'Rhsim13G0105200' => 'rsi', 'Sabra04G0006300' => 'sbr', 'Sabra04G0127000' => 'sbr', 'Sabra08G0148700' => 'sbr', 'Sabra09G0117400' => 'sbr', 'SalBow1G3326' => 'sbo', 'SalBow3G3228' => 'sbo', 'SalBow6G1634' => 'sbo', 'SalBow6G3603' => 'sbo', 'SalBow6G5266' => 'sbo', 'SalBow7G2265' => 'sbo', 'SalBow8G0850' => 'sbo', 'SalBow8G2592' => 'sbo', 'Sc05g0009240' => 'sci', 'Sc12g0002300' => 'sci', 'Sc21g0000100' => 'sci', 'Sc21g0004720' => 'sci', 'Sed0002949' => 'sed', 'Sed0004114' => 'sed', 'Sed0004306' => 'sed', 'Sed0006172' => 'sed', 'Sed0008413' => 'sed', 'Sed0013809' => 'sed', 'Sed0019556' => 'sed', 'SEGI_03570' => 'sgi', 'SEGI_07859' => 'sgi', 'SEGI_15042' => 'sgi', 'SEGI_16263' => 'sgi', 'SEGI_16552' => 'sgi', 'SEGI_24331' => 'sgi', 'SEGI_27316' => 'sgi', 'SEGI_29521' => 'sgi', 'SEGI_41342' => 'sgi', 'SGA_v2.0_scaffold27G11617' => 'sas', 'SGA_v2.0_scaffold316G48428' => 'sas', 'SGA_v2.0_scaffold49G18261' => 'sas', 'SGA_v2.0_scaffold7G03831' => 'sas', 'SGA_v2.0_scaffold93G28359' => 'sas', 'SHI02210' => 'shi', 'SHI06028' => 'shi', 'SHI06321' => 'shi', 'SMO111G0012' => 'smo', 'SMO228G0080' => 'smo', 'SMO356G0756' => 'smo', 'Solyc02g080620.3' => 'sly', 'Solyc06g074530.1' => 'sly', 'Solyc11g066890.1' => 'sly', 'Solyc11g072520.3' => 'sly', 'Sopen02g025330' => 'spe', 'Sopen06g031000' => 'spe', 'Sopen09g008240' => 'spe', 'Sopen09g025210' => 'spe', 'Sopen11g026600' => 'spe', 'Sopen11g030170' => 'spe', 'Sp1g10420' => 'spa', 'Sp3g06570' => 'spa', 'Sp4g10660' => 'spa', 'Sp5g16460' => 'spa', 'Sp6g22710' => 'spa', 'TAR365G0112' => 'tar', 'TAR369G0717' => 'tar', 'TAR374G0976' => 'tar', 'TAR623G1128' => 'tar', 'TAR626G1937' => 'tar', 'TAR627G0123' => 'tar', 'TAR628G0305' => 'tar', 'TAR636G1176' => 'tar', 'TAR636G2442' => 'tar', 'THA.LOC104800556' => 'tha', 'THA.LOC104809501' => 'tha', 'THA.LOC104815126' => 'tha', 'THA.LOC104815732' => 'tha', 'THA.LOC104823528' => 'tha', 'Thecc.02G365600' => 'tca', 'Thecc.06G222300' => 'tca', 'Thecc.09G261800' => 'tca', 'Thecc.09G291400' => 'tca', 'Thhalv10003028m.g' => 'esa', 'Thhalv10007886m.g' => 'esa', 'Thhalv10016085m.g' => 'esa', 'Thhalv10016681m.g' => 'esa', 'Thhalv10020951m.g' => 'esa', 'TPR.G15598' => 'tpr', 'TPR.G29305' => 'tpr', 'TPR.G32395' => 'tpr', 'TPR.G36998' => 'tpr', 'TPR.G4227' => 'tpr', 'TWI18G1433' => 'twi', 'TWI31G0755' => 'twi', 'TWI38G0912' => 'twi', 'TWI75G1097' => 'twi', 'TWI75G1619' => 'twi', 'TWI79G1336' => 'twi', 'unitig_0.g943' => 'ugi', 'unitig_0.g944' => 'ugi', 'unitig_22.g6646' => 'ugi', 'unitig_37.g12681' => 'ugi', 'unitig_8.g3290' => 'ugi', 'vmacro03278' => 'vma', 'vmacro12197' => 'vma', 'vmacro14478' => 'vma', 'vmacro15787' => 'vma', 'vmacro15789' => 'vma', 'vmacro15790' => 'vma', 'vmacro15806' => 'vma', 'vmacro22907' => 'vma', 'vmacro22908' => 'vma', 'vmacro22909' => 'vma', 'vmacro23108' => 'vma', 'VMungo0540G0540' => 'vmu', 'VMungo0540G2468' => 'vmu', 'VMungo1080G0390' => 'vmu', 'VMungo1080G1165' => 'vmu', 'VMungo1127G0170' => 'vmu', 'VMungo1127G2099' => 'vmu', 'VMungo1215G3013' => 'vmu', 'Zm00001eb013110' => 'zma', 'Zm00001eb084260' => 'zma', 'Zm00001eb096110' => 'zma', 'Zm00001eb217510' => 'zma', 'Zm00001eb322550' => 'zma', 'Zm00001eb390770' => 'zma', 'Zm00001eb397170' => 'zma', 'Zm00001eb404610' => 'zma', 'Zm00001eb421790' => 'zma' ) $gf_id = 'HOM05D000911' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000911' ) $data_identifier = 'HOM05D000911' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 16, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 5, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 6, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 8, 'nnu' => (int) 16, 'oeu' => (int) 8, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 5, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 16, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421790' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000911', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27780' => 'bna', 'A03p35380' => 'bna', 'A04p21160' => 'bna', 'A05p40570' => 'bna', 'A06p26900' => 'bna', 'A08p33230' => 'bna', 'A09p65960' => 'bna', 'A10p18290' => 'bna', 'Aa31LG1G12990' => 'aar', 'Aa31LG1G2980' => 'aar', 'Aa31LG4G14320' => 'aar', 'Aa31LG7G11800' => 'aar', 'Aa31sc36G50' => 'aar', 'Aa31sc36G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3721' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5459' => 'aag', 'Actinidia03028' => 'ach', 'Actinidia03753' => 'ach', 'Actinidia04187' => 'ach', 'Actinidia05509' => 'ach', 'Actinidia24180' => 'ach', 'Actinidia26906' => 'ach', 'Actinidia37097' => 'ach', 'Actinidia38249' => 'ach', 'Ah.01g003470' => 'amhyb', 'Ah.01g004580' => 'amhyb', 'Ah.01g014850' => 'amhyb', 'Ah.01g016830' => 'amhyb', 'Ah.14g088000' => 'amhyb', 'AL1G22980' => 'aly', 'AL3G18990' => 'aly', 'AL4G22440' => 'aly', 'AL4G33180' => 'aly', 'AL5G22920' => 'aly', 'AL6G33660' => 'aly', 'AL8G20720' => 'aly', 'Aqoxy1G00935' => 'aox', 'Aqoxy1G02094' => 'aox', 'Aqoxy2G01239' => 'aox', 'Aqoxy4G01870' => 'aox', 'Aqoxy7G00450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.36ZVTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71EM27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5D6C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH3WRE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3NCM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RIM768' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YB5YRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z36GDV' => 'arhy', 'AT1G08250' => 'ath', 'AT1G11790' => 'ath', 'AT2G27820' => 'ath', 'AT3G07630' => 'ath', 'AT3G44720' => 'ath', 'AT5G22630' => 'ath', 'ATR0693G304' => 'atr', 'ATR0794G109' => 'atr', 'ATR0820G120' => 'atr', 'ATR1159G064' => 'atr', 'Atru.chr10.2239' => 'acertr', 'Atru.chr3.3371' => 'acertr', 'Atru.chr6.3202' => 'acertr', 'AUR62006499' => 'cqu', 'AUR62012718' => 'cqu', 'AUR62021938' => 'cqu', 'AUR62023932' => 'cqu', 'AUR62025034' => 'cqu', 'AUR62025035' => 'cqu', 'AUR62038307' => 'cqu', 'AUR62043466' => 'cqu', 'BcaB02g10748' => 'bca', 'BcaB03g13231' => 'bca', 'BcaB03g14689' => 'bca', 'BcaB05g22716' => 'bca', 'BcaB06g28172' => 'bca', 'BcaB08g36413' => 'bca', 'BcaC01g02186' => 'bca', 'BcaC01g04272' => 'bca', 'BcaC02g08080' => 'bca', 'BcaC02g08227' => 'bca', 'BcaC03g13901' => 'bca', 'BcaC04g19593' => 'bca', 'BcaC04g20874' => 'bca', 'BcaC05g29557' => 'bca', 'BcaC06g35505' => 'bca', 'BcaC07g41954' => 'bca', 'BcaC07g41955' => 'bca', 'BcaC07g41956' => 'bca', 'BcaC07g42519' => 'bca', 'BcaC07g42520' => 'bca', 'BcaC07g42523' => 'bca', 'BcaC07g42524' => 'bca', 'BcaC07g42525' => 'bca', 'BcaC08g47480' => 'bca', 'BcaC08g47481' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00530' => 'bna', 'BolC2t07178H' => 'bol', 'BolC3t16567H' => 'bol', 'BolC4t27234H' => 'bol', 'BolC5t29728H' => 'bol', 'BolC5t34622H' => 'bol', 'BolC6t40321H' => 'bol', 'BolC7t42028H' => 'bol', 'BolC8t49125H' => 'bol', 'BolC8t52538H' => 'bol', 'BolC8t52539H' => 'bol', 'BolC9t56681H' => 'bol', 'BolC9t58266H' => 'bol', 'BolSC21t60294H' => 'bol', 'BraA02t05670Z' => 'bra', 'BraA03t12716Z' => 'bra', 'BraA04t17685Z' => 'bra', 'BraA05t22788Z' => 'bra', 'BraA06t24032Z' => 'bra', 'BraA06t25625Z' => 'bra', 'BraA07t27930Z' => 'bra', 'BraA08t35242Z' => 'bra', 'BraA09t38609Z' => 'bra', 'BraA10t43905Z' => 'bra', 'C02p11060' => 'bna', 'C03p42990' => 'bna', 'C03p67310' => 'bna', 'C04p56990' => 'bna', 'C04p58660' => 'bna', 'C05p09890' => 'bna', 'C05p59680' => 'bna', 'C06p19830' => 'bna', 'C06p53040' => 'bna', 'C07p15230' => 'bna', 'C08p50070' => 'bna', 'C08p50090' => 'bna', 'C09p38330' => 'bna', 'C09p53940' => 'bna', 'CAN.G1014.1' => 'can', 'CAN.G644.30' => 'can', 'CAN.G84.47' => 'can', 'CAN.G919.8' => 'can', 'CANSAT54G0113' => 'cansat', 'CANSAT54G1286' => 'cansat', 'CANSAT64G1020' => 'cansat', 'CARHR008080' => 'chi', 'CARHR008090' => 'chi', 'CARHR012130' => 'chi', 'CARHR038390' => 'chi', 'CARHR082330' => 'chi', 'CARHR120520' => 'chi', 'CARHR151470' => 'chi', 'CARHR190950' => 'chi', 'Carub.0001s0760' => 'cru', 'Carub.0001s1146' => 'cru', 'Carub.0003s0721' => 'cru', 'Carub.0004s0858' => 'cru', 'Carub.0005s1040' => 'cru', 'Carub.0006s2035' => 'cru', 'Carub.0015s0005' => 'cru', 'Ca_01607_v3' => 'car', 'Ca_01677_v3' => 'car', 'Ca_06087_v3' => 'car', 'Ca_19238_v3' => 'car', 'Ca_19373_v3' => 'car', 'Ca_21079_v3' => 'car', 'CBR_g54016' => 'cbr', 'CBR_g54018' => 'cbr', 'CBR_g54020' => 'cbr', 'Cc01_g09780' => 'ccan', 'Cc01_g11680' => 'ccan', 'Cc02_g15610' => 'ccan', 'Cc05_g04350' => 'ccan', 'Cc09_g01580' => 'ccan', 'CDE01G0795' => 'cde', 'CDE02G2024' => 'cde', 'CDE02G2260' => 'cde', 'CDE02G4561' => 'cde', 'CDE05G2733' => 'cde', 'CDE05G3422' => 'cde', 'CDE06G2003' => 'cde', 'CDE08G0576' => 'cde', 'CDE09G0048' => 'cde', 'CDE11G0805' => 'cde', 'Cfa003644' => 'cfa', 'Cfa006290' => 'cfa', 'Cfa010080' => 'cfa', 'Cfa011376' => 'cfa', 'Cfa011576' => 'cfa', 'Cfa011577' => 'cfa', 'Cfa014389' => 'cfa', 'Ciclev10006044m.g' => 'ccl', 'Ciclev10006954m.g' => 'ccl', 'Ciclev10015131m.g' => 'ccl', 'Ciclev10015580m.g' => 'ccl', 'Ciclev10028359m.g' => 'ccl', 'Ciclev10028573m.g' => 'ccl', 'CiPaw.03G159300' => 'cil', 'CiPaw.04G115100' => 'cil', 'CiPaw.09G092800' => 'cil', 'CiPaw.10G071800' => 'cil', 'CiPaw.13G105800' => 'cil', 'CiPaw.13G141000' => 'cil', 'CiPaw.14G103400' => 'cil', 'ClCG01G012700' => 'cla', 'ClCG01G012720' => 'cla', 'ClCG01G021920' => 'cla', 'ClCG02G008870' => 'cla', 'ClCG02G020840' => 'cla', 'ClCG02G021930' => 'cla', 'COL.COLO4_19302' => 'col', 'COL.COLO4_25262' => 'col', 'COL.COLO4_31788' => 'col', 'Cpa.g.c34684' => 'cpa', 'Cpa.g.c36520.1' => 'cpa', 'Cpa.g.c45626' => 'cpa', 'Cpa.g.sc121.17' => 'cpa', 'Cpa.g.sc13.22' => 'cpa', 'Cpa.g.sc87.88' => 'cpa', 'Cre06.g261800' => 'cre', 'CsaV3_1G014500' => 'csa', 'CsaV3_1G014510' => 'csa', 'CsaV3_2G034880' => 'csa', 'CsaV3_6G014760' => 'csa', 'CsaV3_6G021500' => 'csa', 'CsaV3_6G048980' => 'csa', 'CSS0002511' => 'camsi', 'CSS0007556' => 'camsi', 'CSS0008532' => 'camsi', 'CSS0009709' => 'camsi', 'CSS0010486' => 'camsi', 'CSS0016768' => 'camsi', 'CSS0023512' => 'camsi', 'CSS0025341' => 'camsi', 'CSS0027999' => 'camsi', 'CSS0028944' => 'camsi', 'CSS0032292' => 'camsi', 'CSS0032464' => 'camsi', 'CSS0037153' => 'camsi', 'CSS0039256' => 'camsi', 'CSS0048392' => 'camsi', 'CSS0050458' => 'camsi', 'DCAR_004224' => 'dca', 'DCAR_006147' => 'dca', 'DCAR_006465' => 'dca', 'DCAR_008159' => 'dca', 'DCAR_012164' => 'dca', 'DCAR_019764' => 'dca', 'Dinv05418' => 'din', 'Dinv10839' => 'din', 'Dinv12521' => 'din', 'Dinv13900' => 'din', 'Dinv29426' => 'din', 'Duzib150G0263' => 'dzi', 'Duzib168G1178' => 'dzi', 'Duzib168G1924' => 'dzi', 'Duzib170G0299' => 'dzi', 'Duzib170G0813' => 'dzi', 'Duzib235G1128' => 'dzi', 'Duzib248G1060' => 'dzi', 'ECA232G1910' => 'eca', 'ECA233G4621' => 'eca', 'ECA238G1216' => 'eca', 'ECA238G1784' => 'eca', 'ECA248G1242' => 'eca', 'EL10Ac8g20071' => 'bvu', 'EL10Ac9g21086' => 'bvu', 'EL10Ac9g22407' => 'bvu', 'EL10Ac9g22412' => 'bvu', 'Eucgr.A01119' => 'egr', 'Eucgr.E04043' => 'egr', 'Eucgr.J00428' => 'egr', 'Eucgr.J00958' => 'egr', 'FAN11G3091' => 'fan', 'FAN11G3651' => 'fan', 'FAN16G2566' => 'fan', 'FAN21G3155' => 'fan', 'FAN21G3400' => 'fan', 'FAN21G3543' => 'fan', 'FAN25G0234' => 'fan', 'FAN25G1422' => 'fan', 'FAN25G3392' => 'fan', 'FvH4_3g01940' => 'fve', 'FvH4_3g29870' => 'fve', 'FvH4_3g33680' => 'fve', 'Glyma.09G004200' => 'gma', 'Glyma.11G151288' => 'gma', 'Glyma.11G189100' => 'gma', 'Glyma.12G072500' => 'gma', 'Glyma.12G085500' => 'gma', 'Glyma.12G181800' => 'gma', 'Glyma.12G193000' => 'gma', 'Glyma.13G309300' => 'gma', 'Glyma.13G319000' => 'gma', 'Glyma.17G012600' => 'gma', 'Gohir.A06G148600' => 'ghi', 'Gohir.A07G115800' => 'ghi', 'Gohir.A08G003600' => 'ghi', 'Gohir.A09G093300' => 'ghi', 'Gohir.A09G105400' => 'ghi', 'Gohir.A09G105500' => 'ghi', 'Gohir.D06G154600' => 'ghi', 'Gohir.D07G120200' => 'ghi', 'Gohir.D08G013900' => 'ghi', 'Gohir.D09G093100' => 'ghi', 'Gohir.D09G102200' => 'ghi', 'Gohir.D09G102300' => 'ghi', 'Gorai.001G129400' => 'gra', 'Gorai.004G008200' => 'gra', 'Gorai.006G109800' => 'gra', 'Gorai.006G119500' => 'gra', 'Gorai.006G121300' => 'gra', 'Gorai.010G180700' => 'gra', 'GSVIVG01012716001' => 'vvi', 'GSVIVG01025118001' => 'vvi', 'GSVIVG01030439001' => 'vvi', 'GSVIVG01031397001' => 'vvi', 'HanXRQChr01g0004201' => 'han', 'HanXRQChr02g0054941' => 'han', 'HanXRQChr05g0141811' => 'han', 'HanXRQChr07g0197751' => 'han', 'HanXRQChr11g0346691' => 'han', 'HanXRQChr13g0396971' => 'han', 'HanXRQChr14g0432951' => 'han', 'HanXRQChr14g0452001' => 'han', 'HanXRQChr15g0496681' => 'han', 'HanXRQChr17g0557491' => 'han', 'HanXRQChr17g0557501' => 'han', 'Haze_06809' => 'cav', 'Haze_12852' => 'cav', 'Haze_15850' => 'cav', 'Haze_23446' => 'cav', 'Haze_23942' => 'cav', 'Haze_23943' => 'cav', 'Hma1.2p1_0091F.1_g046450' => 'hma', 'Hma1.2p1_0128F.1_g059910' => 'hma', 'Hma1.2p1_0249F.1_g102260' => 'hma', 'Hma1.2p1_0453F.1_g156190' => 'hma', 'Hma1.2p1_0695F.1_g204380' => 'hma', 'Hma1.2p1_0749F.1_g212650' => 'hma', 'Hma1.2p1_2156F.1_g315420' => 'hma', 'Hma1.2p1_2686F.1_g326940' => 'hma', 'HPP92_006428' => 'vpl', 'HPP92_012069' => 'vpl', 'HPP92_014129' => 'vpl', 'HPP92_014133' => 'vpl', 'HPP92_017315' => 'vpl', 'HPP92_026445' => 'vpl', 'HPP92_026446' => 'vpl', 'Hund00774' => 'sun', 'Hund07682' => 'sun', 'Hund21413' => 'sun', 'Hund23462' => 'sun', 'Hund23463' => 'sun', 'Lalb_Chr03g0027911' => 'lal', 'Lalb_Chr13g0304271' => 'lal', 'Lalb_Chr19g0137471' => 'lal', 'Lalb_Chr22g0350651' => 'lal', 'Lalb_Chr24g0395151' => 'lal', 'Lj1A1231T40' => 'lonja', 'Lj1A221T48' => 'lonja', 'Lj1C924T12' => 'lonja', 'Lj2C993G6' => 'lonja', 'Lj3g0005790' => 'lja', 'Lj3g0015432' => 'lja', 'Lj3g0017722' => 'lja', 'Lj3g0018497' => 'lja', 'Lj4g0025071' => 'lja', 'Lsat_1_v5_gn_1_129680' => 'lsa', 'Lsat_1_v5_gn_2_25321' => 'lsa', 'Lsat_1_v5_gn_2_95461' => 'lsa', 'Lsat_1_v5_gn_4_159620' => 'lsa', 'Lsat_1_v5_gn_6_41301' => 'lsa', 'Lsat_1_v5_gn_6_74660' => 'lsa', 'Lsat_1_v5_gn_7_11520' => 'lsa', 'Lsat_1_v5_gn_9_67680' => 'lsa', 'Manes.04G008300' => 'mes', 'Manes.04G008400' => 'mes', 'Manes.04G026500' => 'mes', 'Manes.10G135300' => 'mes', 'Manes.11G157300' => 'mes', 'Manes.12G074000' => 'mes', 'Manes.16G006200' => 'mes', 'Manes.17G026400' => 'mes', 'Mapoly0024s0086' => 'mpo', 'Mapoly0024s0087' => 'mpo', 'Mapoly0071s0057' => 'mpo', 'Mapoly0204s0012' => 'mpo', 'MBI04_g37681_MAGBIO' => 'mbi', 'MBI05_g17779_MAGBIO' => 'mbi', 'MBI12_g31184_MAGBIO' => 'mbi', 'MBI17_g11083_MAGBIO' => 'mbi', 'MBI18_g03883_MAGBIO' => 'mbi', 'MBI18_g28940_MAGBIO' => 'mbi', 'MCO01G690' => 'mco', 'MD03G1109900' => 'mdo', 'MD03G1134800' => 'mdo', 'MD05G1348000' => 'mdo', 'MD10G1322400' => 'mdo', 'MD11G1123300' => 'mdo', 'MD11G1157600' => 'mdo', 'Medtr2g084875' => 'mtr', 'Medtr2g088130' => 'mtr', 'Medtr4g055310' => 'mtr', 'Medtr4g061070' => 'mtr', 'Medtr4g132250' => 'mtr', 'MELO3C004795.2' => 'cme', 'MELO3C004797.2' => 'cme', 'MELO3C007396.2' => 'cme', 'MELO3C019277.2' => 'cme', 'MELO3C021449.2' => 'cme', 'MELO3C025736.2' => 'cme', 'Migut.D02175' => 'egut', 'Migut.H01573' => 'egut', 'Migut.M01327' => 'egut', 'Migut.N02513' => 'egut', 'MSTRG.14638' => 'ama', 'MSTRG.18632' => 'ama', 'MSTRG.7203' => 'ama', 'Nitab4.5_0000533g0140' => 'nta', 'Nitab4.5_0000888g0150' => 'nta', 'Nitab4.5_0001453g0040' => 'nta', 'Nitab4.5_0002827g0090' => 'nta', 'Nitab4.5_0003082g0040' => 'nta', 'Nitab4.5_0007799g0040' => 'nta', 'Nitab4.5_0008983g0010' => 'nta', 'Nitab4.5_0009017g0020' => 'nta', 'Nn1g02132' => 'nnu', 'Nn1g03492' => 'nnu', 'Nn1g03493' => 'nnu', 'Nn1g03494' => 'nnu', 'Nn1g07164' => 'nnu', 'Nn1g07291' => 'nnu', 'Nn2g10655' => 'nnu', 'Nn2g11652' => 'nnu', 'Nn2g14008' => 'nnu', 'Nn3g17476' => 'nnu', 'Nn3g17477' => 'nnu', 'Nn4g22370' => 'nnu', 'Nn4g25255' => 'nnu', 'Nn5g27755' => 'nnu', 'Nn6g34260' => 'nnu', 'Nn6g35041' => 'nnu', 'Oeu005924.1' => 'oeu', 'Oeu008383.1' => 'oeu', 'Oeu014928.1' => 'oeu', 'Oeu019889.1' => 'oeu', 'Oeu022271.1' => 'oeu', 'Oeu025271.1' => 'oeu', 'Oeu036302.1' => 'oeu', 'Oeu044100.1' => 'oeu', 'Os01g0528300' => 'osa', 'Os03g0286200' => 'osa', 'Os04g0406600' => 'osa', 'Os07g0512000' => 'osa', 'Os07g0694600' => 'osa', 'Os08g0411000' => 'osa', 'Os09g0565700' => 'osa', 'Os09g0566050' => 'osa', 'Os10g0523700' => 'osa', 'Peaxi162Scf00002g00514' => 'pax', 'Peaxi162Scf00047g01817' => 'pax', 'Peaxi162Scf00114g00001' => 'pax', 'Peaxi162Scf00147g00613' => 'pax', 'Peaxi162Scf00389g00425' => 'pax', 'PGR042G1139' => 'pgr', 'PGR042G3273' => 'pgr', 'PGR102G2180' => 'pgr', 'PGR119G0234' => 'pgr', 'PGR119G0668' => 'pgr', 'PGSC0003DMG400007122' => 'stu', 'PGSC0003DMG400016478' => 'stu', 'PGSC0003DMG400025374' => 'stu', 'PGSC0003DMG400026536' => 'stu', 'Phvul.003G079600' => 'pvu', 'Phvul.005G115600' => 'pvu', 'Phvul.005G127100' => 'pvu', 'Phvul.006G149500' => 'pvu', 'Phvul.006G149600' => 'pvu', 'Phvul.011G071800' => 'pvu', 'Phvul.011G090400' => 'pvu', 'Potri.004G013400' => 'ptr', 'Potri.004G188100' => 'ptr', 'Potri.008G195500' => 'ptr', 'Potri.009G148800' => 'ptr', 'Potri.011G004700' => 'ptr', 'Pp3c17_22810' => 'ppa', 'Pp3c18_4480' => 'ppa', 'Pp3c19_13030' => 'ppa', 'Pp3c1_33620' => 'ppa', 'Pp3c2_9380' => 'ppa', 'PRCOL_00001023' => 'pco', 'Prupe.3G216300' => 'ppe', 'Prupe.4G019500' => 'ppe', 'Prupe.6G092500' => 'ppe', 'Prupe.6G119200' => 'ppe', 'Psat0s1945g0080' => 'psa', 'Psat0s4167g0040' => 'psa', 'Psat1g185800' => 'psa', 'Psat4g006440' => 'psa', 'Psat4g006480' => 'psa', 'Psat4g168120' => 'psa', 'Psat5g255680' => 'psa', 'Psat5g261760' => 'psa', 'Psat7g222120' => 'psa', 'PSO063G7252' => 'pso', 'PSO170G4778' => 'pso', 'PSO210G2249' => 'pso', 'PSO339G2411' => 'pso', 'PSO339G2457' => 'pso', 'PSO339G2854' => 'pso', 'PSO339G4288' => 'pso', 'PSO339G4615' => 'pso', 'PSO384G2796' => 'pso', 'PSO384G2940' => 'pso', 'PSO384G4227' => 'pso', 'PSO478G1425' => 'pso', 'PSO541G3863' => 'pso', 'PSO675G0507' => 'pso', 'PSO782G0338' => 'pso', 'PSO832G0644' => 'pso', 'QL01p013664' => 'qlo', 'QL01p036598' => 'qlo', 'QL05p072984' => 'qlo', 'QL08p005768' => 'qlo', 'QL08p032743' => 'qlo', 'QL93p0073_0439' => 'qlo', 'QL93p0073_0444' => 'qlo', 'RcHm_v2.0_Chr5g0002851' => 'rch', 'RcHm_v2.0_Chr5g0055201' => 'rch', 'RcHm_v2.0_Chr5g0061191' => 'rch', 'RcHm_v2.0_Chr7g0203231' => 'rch', 'Rhsim01G0208100' => 'rsi', 'Rhsim01G0208200' => 'rsi', 'Rhsim02G0106500' => 'rsi', 'Rhsim03G0107900' => 'rsi', 'Rhsim06G0163400' => 'rsi', 'Rhsim13G0105200' => 'rsi', 'Sabra04G0006300' => 'sbr', 'Sabra04G0127000' => 'sbr', 'Sabra08G0148700' => 'sbr', 'Sabra09G0117400' => 'sbr', 'SalBow1G3326' => 'sbo', 'SalBow3G3228' => 'sbo', 'SalBow6G1634' => 'sbo', 'SalBow6G3603' => 'sbo', 'SalBow6G5266' => 'sbo', 'SalBow7G2265' => 'sbo', 'SalBow8G0850' => 'sbo', 'SalBow8G2592' => 'sbo', 'Sc05g0009240' => 'sci', 'Sc12g0002300' => 'sci', 'Sc21g0000100' => 'sci', 'Sc21g0004720' => 'sci', 'Sed0002949' => 'sed', 'Sed0004114' => 'sed', 'Sed0004306' => 'sed', 'Sed0006172' => 'sed', 'Sed0008413' => 'sed', 'Sed0013809' => 'sed', 'Sed0019556' => 'sed', 'SEGI_03570' => 'sgi', 'SEGI_07859' => 'sgi', 'SEGI_15042' => 'sgi', 'SEGI_16263' => 'sgi', 'SEGI_16552' => 'sgi', 'SEGI_24331' => 'sgi', 'SEGI_27316' => 'sgi', 'SEGI_29521' => 'sgi', 'SEGI_41342' => 'sgi', 'SGA_v2.0_scaffold27G11617' => 'sas', 'SGA_v2.0_scaffold316G48428' => 'sas', 'SGA_v2.0_scaffold49G18261' => 'sas', 'SGA_v2.0_scaffold7G03831' => 'sas', 'SGA_v2.0_scaffold93G28359' => 'sas', 'SHI02210' => 'shi', 'SHI06028' => 'shi', 'SHI06321' => 'shi', 'SMO111G0012' => 'smo', 'SMO228G0080' => 'smo', 'SMO356G0756' => 'smo', 'Solyc02g080620.3' => 'sly', 'Solyc06g074530.1' => 'sly', 'Solyc11g066890.1' => 'sly', 'Solyc11g072520.3' => 'sly', 'Sopen02g025330' => 'spe', 'Sopen06g031000' => 'spe', 'Sopen09g008240' => 'spe', 'Sopen09g025210' => 'spe', 'Sopen11g026600' => 'spe', 'Sopen11g030170' => 'spe', 'Sp1g10420' => 'spa', 'Sp3g06570' => 'spa', 'Sp4g10660' => 'spa', 'Sp5g16460' => 'spa', 'Sp6g22710' => 'spa', 'TAR365G0112' => 'tar', 'TAR369G0717' => 'tar', 'TAR374G0976' => 'tar', 'TAR623G1128' => 'tar', 'TAR626G1937' => 'tar', 'TAR627G0123' => 'tar', 'TAR628G0305' => 'tar', 'TAR636G1176' => 'tar', 'TAR636G2442' => 'tar', 'THA.LOC104800556' => 'tha', 'THA.LOC104809501' => 'tha', 'THA.LOC104815126' => 'tha', 'THA.LOC104815732' => 'tha', 'THA.LOC104823528' => 'tha', 'Thecc.02G365600' => 'tca', 'Thecc.06G222300' => 'tca', 'Thecc.09G261800' => 'tca', 'Thecc.09G291400' => 'tca', 'Thhalv10003028m.g' => 'esa', 'Thhalv10007886m.g' => 'esa', 'Thhalv10016085m.g' => 'esa', 'Thhalv10016681m.g' => 'esa', 'Thhalv10020951m.g' => 'esa', 'TPR.G15598' => 'tpr', 'TPR.G29305' => 'tpr', 'TPR.G32395' => 'tpr', 'TPR.G36998' => 'tpr', 'TPR.G4227' => 'tpr', 'TWI18G1433' => 'twi', 'TWI31G0755' => 'twi', 'TWI38G0912' => 'twi', 'TWI75G1097' => 'twi', 'TWI75G1619' => 'twi', 'TWI79G1336' => 'twi', 'unitig_0.g943' => 'ugi', 'unitig_0.g944' => 'ugi', 'unitig_22.g6646' => 'ugi', 'unitig_37.g12681' => 'ugi', 'unitig_8.g3290' => 'ugi', 'vmacro03278' => 'vma', 'vmacro12197' => 'vma', 'vmacro14478' => 'vma', 'vmacro15787' => 'vma', 'vmacro15789' => 'vma', 'vmacro15790' => 'vma', 'vmacro15806' => 'vma', 'vmacro22907' => 'vma', 'vmacro22908' => 'vma', 'vmacro22909' => 'vma', 'vmacro23108' => 'vma', 'VMungo0540G0540' => 'vmu', 'VMungo0540G2468' => 'vmu', 'VMungo1080G0390' => 'vmu', 'VMungo1080G1165' => 'vmu', 'VMungo1127G0170' => 'vmu', 'VMungo1127G2099' => 'vmu', 'VMungo1215G3013' => 'vmu', 'Zm00001eb013110' => 'zma', 'Zm00001eb084260' => 'zma', 'Zm00001eb096110' => 'zma', 'Zm00001eb217510' => 'zma', 'Zm00001eb322550' => 'zma', 'Zm00001eb390770' => 'zma', 'Zm00001eb397170' => 'zma', 'Zm00001eb404610' => 'zma', 'Zm00001eb421790' => 'zma' ), 'gf_id' => 'HOM05D000911', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000911' ), 'data_identifier' => 'HOM05D000911', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000911', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27780' => 'bna', 'A03p35380' => 'bna', 'A04p21160' => 'bna', 'A05p40570' => 'bna', 'A06p26900' => 'bna', 'A08p33230' => 'bna', 'A09p65960' => 'bna', 'A10p18290' => 'bna', 'Aa31LG1G12990' => 'aar', 'Aa31LG1G2980' => 'aar', 'Aa31LG4G14320' => 'aar', 'Aa31LG7G11800' => 'aar', 'Aa31sc36G50' => 'aar', 'Aa31sc36G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3721' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5459' => 'aag', 'Actinidia03028' => 'ach', 'Actinidia03753' => 'ach', 'Actinidia04187' => 'ach', 'Actinidia05509' => 'ach', 'Actinidia24180' => 'ach', 'Actinidia26906' => 'ach', 'Actinidia37097' => 'ach', 'Actinidia38249' => 'ach', 'Ah.01g003470' => 'amhyb', 'Ah.01g004580' => 'amhyb', 'Ah.01g014850' => 'amhyb', 'Ah.01g016830' => 'amhyb', 'Ah.14g088000' => 'amhyb', 'AL1G22980' => 'aly', 'AL3G18990' => 'aly', 'AL4G22440' => 'aly', 'AL4G33180' => 'aly', 'AL5G22920' => 'aly', 'AL6G33660' => 'aly', 'AL8G20720' => 'aly', 'Aqoxy1G00935' => 'aox', 'Aqoxy1G02094' => 'aox', 'Aqoxy2G01239' => 'aox', 'Aqoxy4G01870' => 'aox', 'Aqoxy7G00450' => 'aox', 'arahy.Tifrunner.gnm1.ann1.36ZVTJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.71EM27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5D6C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EH3WRE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3NCM2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RIM768' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YB5YRA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z36GDV' => 'arhy', 'AT1G08250' => 'ath', 'AT1G11790' => 'ath', 'AT2G27820' => 'ath', 'AT3G07630' => 'ath', 'AT3G44720' => 'ath', 'AT5G22630' => 'ath', 'ATR0693G304' => 'atr', 'ATR0794G109' => 'atr', 'ATR0820G120' => 'atr', 'ATR1159G064' => 'atr', 'Atru.chr10.2239' => 'acertr', 'Atru.chr3.3371' => 'acertr', 'Atru.chr6.3202' => 'acertr', 'AUR62006499' => 'cqu', 'AUR62012718' => 'cqu', 'AUR62021938' => 'cqu', 'AUR62023932' => 'cqu', 'AUR62025034' => 'cqu', 'AUR62025035' => 'cqu', 'AUR62038307' => 'cqu', 'AUR62043466' => 'cqu', 'BcaB02g10748' => 'bca', 'BcaB03g13231' => 'bca', 'BcaB03g14689' => 'bca', 'BcaB05g22716' => 'bca', 'BcaB06g28172' => 'bca', 'BcaB08g36413' => 'bca', 'BcaC01g02186' => 'bca', 'BcaC01g04272' => 'bca', 'BcaC02g08080' => 'bca', 'BcaC02g08227' => 'bca', 'BcaC03g13901' => 'bca', 'BcaC04g19593' => 'bca', 'BcaC04g20874' => 'bca', 'BcaC05g29557' => 'bca', 'BcaC06g35505' => 'bca', 'BcaC07g41954' => 'bca', 'BcaC07g41955' => 'bca', 'BcaC07g41956' => 'bca', 'BcaC07g42519' => 'bca', 'BcaC07g42520' => 'bca', 'BcaC07g42523' => 'bca', 'BcaC07g42524' => 'bca', 'BcaC07g42525' => 'bca', 'BcaC08g47480' => 'bca', 'BcaC08g47481' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00530' => 'bna', 'BolC2t07178H' => 'bol', 'BolC3t16567H' => 'bol', 'BolC4t27234H' => 'bol', 'BolC5t29728H' => 'bol', 'BolC5t34622H' => 'bol', 'BolC6t40321H' => 'bol', 'BolC7t42028H' => 'bol', 'BolC8t49125H' => 'bol', 'BolC8t52538H' => 'bol', 'BolC8t52539H' => 'bol', 'BolC9t56681H' => 'bol', 'BolC9t58266H' => 'bol', 'BolSC21t60294H' => 'bol', 'BraA02t05670Z' => 'bra', 'BraA03t12716Z' => 'bra', 'BraA04t17685Z' => 'bra', 'BraA05t22788Z' => 'bra', 'BraA06t24032Z' => 'bra', 'BraA06t25625Z' => 'bra', 'BraA07t27930Z' => 'bra', 'BraA08t35242Z' => 'bra', 'BraA09t38609Z' => 'bra', 'BraA10t43905Z' => 'bra', 'C02p11060' => 'bna', 'C03p42990' => 'bna', 'C03p67310' => 'bna', 'C04p56990' => 'bna', 'C04p58660' => 'bna', 'C05p09890' => 'bna', 'C05p59680' => 'bna', 'C06p19830' => 'bna', 'C06p53040' => 'bna', 'C07p15230' => 'bna', 'C08p50070' => 'bna', 'C08p50090' => 'bna', 'C09p38330' => 'bna', 'C09p53940' => 'bna', 'CAN.G1014.1' => 'can', 'CAN.G644.30' => 'can', 'CAN.G84.47' => 'can', 'CAN.G919.8' => 'can', 'CANSAT54G0113' => 'cansat', 'CANSAT54G1286' => 'cansat', 'CANSAT64G1020' => 'cansat', 'CARHR008080' => 'chi', 'CARHR008090' => 'chi', 'CARHR012130' => 'chi', 'CARHR038390' => 'chi', 'CARHR082330' => 'chi', 'CARHR120520' => 'chi', 'CARHR151470' => 'chi', 'CARHR190950' => 'chi', 'Carub.0001s0760' => 'cru', 'Carub.0001s1146' => 'cru', 'Carub.0003s0721' => 'cru', 'Carub.0004s0858' => 'cru', 'Carub.0005s1040' => 'cru', 'Carub.0006s2035' => 'cru', 'Carub.0015s0005' => 'cru', 'Ca_01607_v3' => 'car', 'Ca_01677_v3' => 'car', 'Ca_06087_v3' => 'car', 'Ca_19238_v3' => 'car', 'Ca_19373_v3' => 'car', 'Ca_21079_v3' => 'car', 'CBR_g54016' => 'cbr', 'CBR_g54018' => 'cbr', 'CBR_g54020' => 'cbr', 'Cc01_g09780' => 'ccan', 'Cc01_g11680' => 'ccan', 'Cc02_g15610' => 'ccan', 'Cc05_g04350' => 'ccan', 'Cc09_g01580' => 'ccan', 'CDE01G0795' => 'cde', 'CDE02G2024' => 'cde', 'CDE02G2260' => 'cde', 'CDE02G4561' => 'cde', 'CDE05G2733' => 'cde', 'CDE05G3422' => 'cde', 'CDE06G2003' => 'cde', 'CDE08G0576' => 'cde', 'CDE09G0048' => 'cde', 'CDE11G0805' => 'cde', 'Cfa003644' => 'cfa', 'Cfa006290' => 'cfa', 'Cfa010080' => 'cfa', 'Cfa011376' => 'cfa', 'Cfa011576' => 'cfa', 'Cfa011577' => 'cfa', 'Cfa014389' => 'cfa', 'Ciclev10006044m.g' => 'ccl', 'Ciclev10006954m.g' => 'ccl', 'Ciclev10015131m.g' => 'ccl', 'Ciclev10015580m.g' => 'ccl', 'Ciclev10028359m.g' => 'ccl', 'Ciclev10028573m.g' => 'ccl', 'CiPaw.03G159300' => 'cil', 'CiPaw.04G115100' => 'cil', 'CiPaw.09G092800' => 'cil', 'CiPaw.10G071800' => 'cil', 'CiPaw.13G105800' => 'cil', 'CiPaw.13G141000' => 'cil', 'CiPaw.14G103400' => 'cil', 'ClCG01G012700' => 'cla', 'ClCG01G012720' => 'cla', 'ClCG01G021920' => 'cla', 'ClCG02G008870' => 'cla', 'ClCG02G020840' => 'cla', 'ClCG02G021930' => 'cla', 'COL.COLO4_19302' => 'col', 'COL.COLO4_25262' => 'col', 'COL.COLO4_31788' => 'col', 'Cpa.g.c34684' => 'cpa', 'Cpa.g.c36520.1' => 'cpa', 'Cpa.g.c45626' => 'cpa', 'Cpa.g.sc121.17' => 'cpa', 'Cpa.g.sc13.22' => 'cpa', 'Cpa.g.sc87.88' => 'cpa', 'Cre06.g261800' => 'cre', 'CsaV3_1G014500' => 'csa', 'CsaV3_1G014510' => 'csa', 'CsaV3_2G034880' => 'csa', 'CsaV3_6G014760' => 'csa', 'CsaV3_6G021500' => 'csa', 'CsaV3_6G048980' => 'csa', 'CSS0002511' => 'camsi', 'CSS0007556' => 'camsi', 'CSS0008532' => 'camsi', 'CSS0009709' => 'camsi', 'CSS0010486' => 'camsi', 'CSS0016768' => 'camsi', 'CSS0023512' => 'camsi', 'CSS0025341' => 'camsi', 'CSS0027999' => 'camsi', 'CSS0028944' => 'camsi', 'CSS0032292' => 'camsi', 'CSS0032464' => 'camsi', 'CSS0037153' => 'camsi', 'CSS0039256' => 'camsi', 'CSS0048392' => 'camsi', 'CSS0050458' => 'camsi', 'DCAR_004224' => 'dca', 'DCAR_006147' => 'dca', 'DCAR_006465' => 'dca', 'DCAR_008159' => 'dca', 'DCAR_012164' => 'dca', 'DCAR_019764' => 'dca', 'Dinv05418' => 'din', 'Dinv10839' => 'din', 'Dinv12521' => 'din', 'Dinv13900' => 'din', 'Dinv29426' => 'din', 'Duzib150G0263' => 'dzi', 'Duzib168G1178' => 'dzi', 'Duzib168G1924' => 'dzi', 'Duzib170G0299' => 'dzi', 'Duzib170G0813' => 'dzi', 'Duzib235G1128' => 'dzi', 'Duzib248G1060' => 'dzi', 'ECA232G1910' => 'eca', 'ECA233G4621' => 'eca', 'ECA238G1216' => 'eca', 'ECA238G1784' => 'eca', 'ECA248G1242' => 'eca', 'EL10Ac8g20071' => 'bvu', 'EL10Ac9g21086' => 'bvu', 'EL10Ac9g22407' => 'bvu', 'EL10Ac9g22412' => 'bvu', 'Eucgr.A01119' => 'egr', 'Eucgr.E04043' => 'egr', 'Eucgr.J00428' => 'egr', 'Eucgr.J00958' => 'egr', 'FAN11G3091' => 'fan', 'FAN11G3651' => 'fan', 'FAN16G2566' => 'fan', 'FAN21G3155' => 'fan', 'FAN21G3400' => 'fan', 'FAN21G3543' => 'fan', 'FAN25G0234' => 'fan', 'FAN25G1422' => 'fan', 'FAN25G3392' => 'fan', 'FvH4_3g01940' => 'fve', 'FvH4_3g29870' => 'fve', 'FvH4_3g33680' => 'fve', 'Glyma.09G004200' => 'gma', 'Glyma.11G151288' => 'gma', 'Glyma.11G189100' => 'gma', 'Glyma.12G072500' => 'gma', 'Glyma.12G085500' => 'gma', 'Glyma.12G181800' => 'gma', 'Glyma.12G193000' => 'gma', 'Glyma.13G309300' => 'gma', 'Glyma.13G319000' => 'gma', 'Glyma.17G012600' => 'gma', 'Gohir.A06G148600' => 'ghi', 'Gohir.A07G115800' => 'ghi', 'Gohir.A08G003600' => 'ghi', 'Gohir.A09G093300' => 'ghi', 'Gohir.A09G105400' => 'ghi', 'Gohir.A09G105500' => 'ghi', 'Gohir.D06G154600' => 'ghi', 'Gohir.D07G120200' => 'ghi', 'Gohir.D08G013900' => 'ghi', 'Gohir.D09G093100' => 'ghi', 'Gohir.D09G102200' => 'ghi', 'Gohir.D09G102300' => 'ghi', 'Gorai.001G129400' => 'gra', 'Gorai.004G008200' => 'gra', 'Gorai.006G109800' => 'gra', 'Gorai.006G119500' => 'gra', 'Gorai.006G121300' => 'gra', 'Gorai.010G180700' => 'gra', 'GSVIVG01012716001' => 'vvi', 'GSVIVG01025118001' => 'vvi', 'GSVIVG01030439001' => 'vvi', 'GSVIVG01031397001' => 'vvi', 'HanXRQChr01g0004201' => 'han', 'HanXRQChr02g0054941' => 'han', 'HanXRQChr05g0141811' => 'han', 'HanXRQChr07g0197751' => 'han', 'HanXRQChr11g0346691' => 'han', 'HanXRQChr13g0396971' => 'han', 'HanXRQChr14g0432951' => 'han', 'HanXRQChr14g0452001' => 'han', 'HanXRQChr15g0496681' => 'han', 'HanXRQChr17g0557491' => 'han', 'HanXRQChr17g0557501' => 'han', 'Haze_06809' => 'cav', 'Haze_12852' => 'cav', 'Haze_15850' => 'cav', 'Haze_23446' => 'cav', 'Haze_23942' => 'cav', 'Haze_23943' => 'cav', 'Hma1.2p1_0091F.1_g046450' => 'hma', 'Hma1.2p1_0128F.1_g059910' => 'hma', 'Hma1.2p1_0249F.1_g102260' => 'hma', 'Hma1.2p1_0453F.1_g156190' => 'hma', 'Hma1.2p1_0695F.1_g204380' => 'hma', 'Hma1.2p1_0749F.1_g212650' => 'hma', 'Hma1.2p1_2156F.1_g315420' => 'hma', 'Hma1.2p1_2686F.1_g326940' => 'hma', 'HPP92_006428' => 'vpl', 'HPP92_012069' => 'vpl', 'HPP92_014129' => 'vpl', 'HPP92_014133' => 'vpl', 'HPP92_017315' => 'vpl', 'HPP92_026445' => 'vpl', 'HPP92_026446' => 'vpl', 'Hund00774' => 'sun', 'Hund07682' => 'sun', 'Hund21413' => 'sun', 'Hund23462' => 'sun', 'Hund23463' => 'sun', 'Lalb_Chr03g0027911' => 'lal', 'Lalb_Chr13g0304271' => 'lal', 'Lalb_Chr19g0137471' => 'lal', 'Lalb_Chr22g0350651' => 'lal', 'Lalb_Chr24g0395151' => 'lal', 'Lj1A1231T40' => 'lonja', 'Lj1A221T48' => 'lonja', 'Lj1C924T12' => 'lonja', 'Lj2C993G6' => 'lonja', 'Lj3g0005790' => 'lja', 'Lj3g0015432' => 'lja', 'Lj3g0017722' => 'lja', 'Lj3g0018497' => 'lja', 'Lj4g0025071' => 'lja', 'Lsat_1_v5_gn_1_129680' => 'lsa', 'Lsat_1_v5_gn_2_25321' => 'lsa', 'Lsat_1_v5_gn_2_95461' => 'lsa', 'Lsat_1_v5_gn_4_159620' => 'lsa', 'Lsat_1_v5_gn_6_41301' => 'lsa', 'Lsat_1_v5_gn_6_74660' => 'lsa', 'Lsat_1_v5_gn_7_11520' => 'lsa', 'Lsat_1_v5_gn_9_67680' => 'lsa', 'Manes.04G008300' => 'mes', 'Manes.04G008400' => 'mes', 'Manes.04G026500' => 'mes', 'Manes.10G135300' => 'mes', 'Manes.11G157300' => 'mes', 'Manes.12G074000' => 'mes', 'Manes.16G006200' => 'mes', 'Manes.17G026400' => 'mes', 'Mapoly0024s0086' => 'mpo', 'Mapoly0024s0087' => 'mpo', 'Mapoly0071s0057' => 'mpo', 'Mapoly0204s0012' => 'mpo', 'MBI04_g37681_MAGBIO' => 'mbi', 'MBI05_g17779_MAGBIO' => 'mbi', 'MBI12_g31184_MAGBIO' => 'mbi', 'MBI17_g11083_MAGBIO' => 'mbi', 'MBI18_g03883_MAGBIO' => 'mbi', 'MBI18_g28940_MAGBIO' => 'mbi', 'MCO01G690' => 'mco', 'MD03G1109900' => 'mdo', 'MD03G1134800' => 'mdo', 'MD05G1348000' => 'mdo', 'MD10G1322400' => 'mdo', 'MD11G1123300' => 'mdo', 'MD11G1157600' => 'mdo', 'Medtr2g084875' => 'mtr', 'Medtr2g088130' => 'mtr', 'Medtr4g055310' => 'mtr', 'Medtr4g061070' => 'mtr', 'Medtr4g132250' => 'mtr', 'MELO3C004795.2' => 'cme', 'MELO3C004797.2' => 'cme', 'MELO3C007396.2' => 'cme', 'MELO3C019277.2' => 'cme', 'MELO3C021449.2' => 'cme', 'MELO3C025736.2' => 'cme', 'Migut.D02175' => 'egut', 'Migut.H01573' => 'egut', 'Migut.M01327' => 'egut', 'Migut.N02513' => 'egut', 'MSTRG.14638' => 'ama', 'MSTRG.18632' => 'ama', 'MSTRG.7203' => 'ama', 'Nitab4.5_0000533g0140' => 'nta', 'Nitab4.5_0000888g0150' => 'nta', 'Nitab4.5_0001453g0040' => 'nta', 'Nitab4.5_0002827g0090' => 'nta', 'Nitab4.5_0003082g0040' => 'nta', 'Nitab4.5_0007799g0040' => 'nta', 'Nitab4.5_0008983g0010' => 'nta', 'Nitab4.5_0009017g0020' => 'nta', 'Nn1g02132' => 'nnu', 'Nn1g03492' => 'nnu', 'Nn1g03493' => 'nnu', 'Nn1g03494' => 'nnu', 'Nn1g07164' => 'nnu', 'Nn1g07291' => 'nnu', 'Nn2g10655' => 'nnu', 'Nn2g11652' => 'nnu', 'Nn2g14008' => 'nnu', 'Nn3g17476' => 'nnu', 'Nn3g17477' => 'nnu', 'Nn4g22370' => 'nnu', 'Nn4g25255' => 'nnu', 'Nn5g27755' => 'nnu', 'Nn6g34260' => 'nnu', 'Nn6g35041' => 'nnu', 'Oeu005924.1' => 'oeu', 'Oeu008383.1' => 'oeu', 'Oeu014928.1' => 'oeu', 'Oeu019889.1' => 'oeu', 'Oeu022271.1' => 'oeu', 'Oeu025271.1' => 'oeu', 'Oeu036302.1' => 'oeu', 'Oeu044100.1' => 'oeu', 'Os01g0528300' => 'osa', 'Os03g0286200' => 'osa', 'Os04g0406600' => 'osa', 'Os07g0512000' => 'osa', 'Os07g0694600' => 'osa', 'Os08g0411000' => 'osa', 'Os09g0565700' => 'osa', 'Os09g0566050' => 'osa', 'Os10g0523700' => 'osa', 'Peaxi162Scf00002g00514' => 'pax', 'Peaxi162Scf00047g01817' => 'pax', 'Peaxi162Scf00114g00001' => 'pax', 'Peaxi162Scf00147g00613' => 'pax', 'Peaxi162Scf00389g00425' => 'pax', 'PGR042G1139' => 'pgr', 'PGR042G3273' => 'pgr', 'PGR102G2180' => 'pgr', 'PGR119G0234' => 'pgr', 'PGR119G0668' => 'pgr', 'PGSC0003DMG400007122' => 'stu', 'PGSC0003DMG400016478' => 'stu', 'PGSC0003DMG400025374' => 'stu', 'PGSC0003DMG400026536' => 'stu', 'Phvul.003G079600' => 'pvu', 'Phvul.005G115600' => 'pvu', 'Phvul.005G127100' => 'pvu', 'Phvul.006G149500' => 'pvu', 'Phvul.006G149600' => 'pvu', 'Phvul.011G071800' => 'pvu', 'Phvul.011G090400' => 'pvu', 'Potri.004G013400' => 'ptr', 'Potri.004G188100' => 'ptr', 'Potri.008G195500' => 'ptr', 'Potri.009G148800' => 'ptr', 'Potri.011G004700' => 'ptr', 'Pp3c17_22810' => 'ppa', 'Pp3c18_4480' => 'ppa', 'Pp3c19_13030' => 'ppa', 'Pp3c1_33620' => 'ppa', 'Pp3c2_9380' => 'ppa', 'PRCOL_00001023' => 'pco', 'Prupe.3G216300' => 'ppe', 'Prupe.4G019500' => 'ppe', 'Prupe.6G092500' => 'ppe', 'Prupe.6G119200' => 'ppe', 'Psat0s1945g0080' => 'psa', 'Psat0s4167g0040' => 'psa', 'Psat1g185800' => 'psa', 'Psat4g006440' => 'psa', 'Psat4g006480' => 'psa', 'Psat4g168120' => 'psa', 'Psat5g255680' => 'psa', 'Psat5g261760' => 'psa', 'Psat7g222120' => 'psa', 'PSO063G7252' => 'pso', 'PSO170G4778' => 'pso', 'PSO210G2249' => 'pso', 'PSO339G2411' => 'pso', 'PSO339G2457' => 'pso', 'PSO339G2854' => 'pso', 'PSO339G4288' => 'pso', 'PSO339G4615' => 'pso', 'PSO384G2796' => 'pso', 'PSO384G2940' => 'pso', 'PSO384G4227' => 'pso', 'PSO478G1425' => 'pso', 'PSO541G3863' => 'pso', 'PSO675G0507' => 'pso', 'PSO782G0338' => 'pso', 'PSO832G0644' => 'pso', 'QL01p013664' => 'qlo', 'QL01p036598' => 'qlo', 'QL05p072984' => 'qlo', 'QL08p005768' => 'qlo', 'QL08p032743' => 'qlo', 'QL93p0073_0439' => 'qlo', 'QL93p0073_0444' => 'qlo', 'RcHm_v2.0_Chr5g0002851' => 'rch', 'RcHm_v2.0_Chr5g0055201' => 'rch', 'RcHm_v2.0_Chr5g0061191' => 'rch', 'RcHm_v2.0_Chr7g0203231' => 'rch', 'Rhsim01G0208100' => 'rsi', 'Rhsim01G0208200' => 'rsi', 'Rhsim02G0106500' => 'rsi', 'Rhsim03G0107900' => 'rsi', 'Rhsim06G0163400' => 'rsi', 'Rhsim13G0105200' => 'rsi', 'Sabra04G0006300' => 'sbr', 'Sabra04G0127000' => 'sbr', 'Sabra08G0148700' => 'sbr', 'Sabra09G0117400' => 'sbr', 'SalBow1G3326' => 'sbo', 'SalBow3G3228' => 'sbo', 'SalBow6G1634' => 'sbo', 'SalBow6G3603' => 'sbo', 'SalBow6G5266' => 'sbo', 'SalBow7G2265' => 'sbo', 'SalBow8G0850' => 'sbo', 'SalBow8G2592' => 'sbo', 'Sc05g0009240' => 'sci', 'Sc12g0002300' => 'sci', 'Sc21g0000100' => 'sci', 'Sc21g0004720' => 'sci', 'Sed0002949' => 'sed', 'Sed0004114' => 'sed', 'Sed0004306' => 'sed', 'Sed0006172' => 'sed', 'Sed0008413' => 'sed', 'Sed0013809' => 'sed', 'Sed0019556' => 'sed', 'SEGI_03570' => 'sgi', 'SEGI_07859' => 'sgi', 'SEGI_15042' => 'sgi', 'SEGI_16263' => 'sgi', 'SEGI_16552' => 'sgi', 'SEGI_24331' => 'sgi', 'SEGI_27316' => 'sgi', 'SEGI_29521' => 'sgi', 'SEGI_41342' => 'sgi', 'SGA_v2.0_scaffold27G11617' => 'sas', 'SGA_v2.0_scaffold316G48428' => 'sas', 'SGA_v2.0_scaffold49G18261' => 'sas', 'SGA_v2.0_scaffold7G03831' => 'sas', 'SGA_v2.0_scaffold93G28359' => 'sas', 'SHI02210' => 'shi', 'SHI06028' => 'shi', 'SHI06321' => 'shi', 'SMO111G0012' => 'smo', 'SMO228G0080' => 'smo', 'SMO356G0756' => 'smo', 'Solyc02g080620.3' => 'sly', 'Solyc06g074530.1' => 'sly', 'Solyc11g066890.1' => 'sly', 'Solyc11g072520.3' => 'sly', 'Sopen02g025330' => 'spe', 'Sopen06g031000' => 'spe', 'Sopen09g008240' => 'spe', 'Sopen09g025210' => 'spe', 'Sopen11g026600' => 'spe', 'Sopen11g030170' => 'spe', 'Sp1g10420' => 'spa', 'Sp3g06570' => 'spa', 'Sp4g10660' => 'spa', 'Sp5g16460' => 'spa', 'Sp6g22710' => 'spa', 'TAR365G0112' => 'tar', 'TAR369G0717' => 'tar', 'TAR374G0976' => 'tar', 'TAR623G1128' => 'tar', 'TAR626G1937' => 'tar', 'TAR627G0123' => 'tar', 'TAR628G0305' => 'tar', 'TAR636G1176' => 'tar', 'TAR636G2442' => 'tar', 'THA.LOC104800556' => 'tha', 'THA.LOC104809501' => 'tha', 'THA.LOC104815126' => 'tha', 'THA.LOC104815732' => 'tha', 'THA.LOC104823528' => 'tha', 'Thecc.02G365600' => 'tca', 'Thecc.06G222300' => 'tca', 'Thecc.09G261800' => 'tca', 'Thecc.09G291400' => 'tca', 'Thhalv10003028m.g' => 'esa', 'Thhalv10007886m.g' => 'esa', 'Thhalv10016085m.g' => 'esa', 'Thhalv10016681m.g' => 'esa', 'Thhalv10020951m.g' => 'esa', 'TPR.G15598' => 'tpr', 'TPR.G29305' => 'tpr', 'TPR.G32395' => 'tpr', 'TPR.G36998' => 'tpr', 'TPR.G4227' => 'tpr', 'TWI18G1433' => 'twi', 'TWI31G0755' => 'twi', 'TWI38G0912' => 'twi', 'TWI75G1097' => 'twi', 'TWI75G1619' => 'twi', 'TWI79G1336' => 'twi', 'unitig_0.g943' => 'ugi', 'unitig_0.g944' => 'ugi', 'unitig_22.g6646' => 'ugi', 'unitig_37.g12681' => 'ugi', 'unitig_8.g3290' => 'ugi', 'vmacro03278' => 'vma', 'vmacro12197' => 'vma', 'vmacro14478' => 'vma', 'vmacro15787' => 'vma', 'vmacro15789' => 'vma', 'vmacro15790' => 'vma', 'vmacro15806' => 'vma', 'vmacro22907' => 'vma', 'vmacro22908' => 'vma', 'vmacro22909' => 'vma', 'vmacro23108' => 'vma', 'VMungo0540G0540' => 'vmu', 'VMungo0540G2468' => 'vmu', 'VMungo1080G0390' => 'vmu', 'VMungo1080G1165' => 'vmu', 'VMungo1127G0170' => 'vmu', 'VMungo1127G2099' => 'vmu', 'VMungo1215G3013' => 'vmu', 'Zm00001eb013110' => 'zma', 'Zm00001eb084260' => 'zma', 'Zm00001eb096110' => 'zma', 'Zm00001eb217510' => 'zma', 'Zm00001eb322550' => 'zma', 'Zm00001eb390770' => 'zma', 'Zm00001eb397170' => 'zma', 'Zm00001eb404610' => 'zma', 'Zm00001eb421790' => 'zma' ) $gf_id = 'HOM05D000911' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000911' ) $data_identifier = 'HOM05D000911' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 25, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 4, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 16, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 10, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 5, 'lonja' => (int) 4, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 6, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 8, 'nnu' => (int) 16, 'oeu' => (int) 8, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 5, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 16, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421790' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1